locus-tag class description BOQ57_00005 PF11638 DnaA N-terminal domain BOQ57_00005 PF08299 Bacterial dnaA protein helix-turn-helix BOQ57_00005 PF00308 Bacterial dnaA protein BOQ57_00010 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_00015 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_00025 PF00468 Ribosomal protein L34 BOQ57_00030 PF00825 Ribonuclease P BOQ57_00035 PF01809 Putative membrane protein insertion efficiency factor BOQ57_00040 PF02096 60Kd inner membrane protein BOQ57_00040 PF14849 YidC periplasmic domain BOQ57_00045 PF01926 50S ribosome-binding GTPase BOQ57_00045 PF12631 MnmE helical domain BOQ57_00045 PF10396 GTP-binding protein TrmE N-terminus BOQ57_00050 PF01032 FecCD transport family BOQ57_00060 PF00005 ABC transporter BOQ57_00065 PF00005 ABC transporter BOQ57_00070 PF07715 TonB-dependent Receptor Plug Domain BOQ57_00070 PF00593 TonB dependent receptor BOQ57_00075 PF00258 Flavodoxin BOQ57_00080 PF13932 GidA associated domain BOQ57_00080 PF01134 Glucose inhibited division protein A BOQ57_00085 PF02527 rRNA small subunit methyltransferase G BOQ57_00090 PF13614 AAA domain BOQ57_00095 PF02195 ParB-like nuclease domain BOQ57_00095 PF17762 HTH domain found in ParB protein BOQ57_00105 PF00119 ATP synthase A chain BOQ57_00110 PF00137 ATP synthase subunit C BOQ57_00115 PF00430 ATP synthase B/B' CF(0) BOQ57_00120 PF00213 ATP synthase delta (OSCP) subunit BOQ57_00125 PF02874 ATP synthase alpha/beta family, beta-barrel domain BOQ57_00125 PF00306 ATP synthase alpha/beta chain, C terminal domain BOQ57_00125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BOQ57_00130 PF00231 ATP synthase BOQ57_00135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BOQ57_00135 PF02874 ATP synthase alpha/beta family, beta-barrel domain BOQ57_00140 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BOQ57_00140 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain BOQ57_00145 PF12804 MobA-like NTP transferase domain BOQ57_00145 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_00145 PF14602 Hexapeptide repeat of succinyl-transferase BOQ57_00150 PF06123 Inner membrane protein CreD BOQ57_00155 PF00905 Penicillin binding protein transpeptidase domain BOQ57_00160 PF00672 HAMP domain BOQ57_00160 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_00165 PF00072 Response regulator receiver domain BOQ57_00165 PF00486 Transcriptional regulatory protein, C terminal BOQ57_00170 PF00455 DeoR C terminal sensor domain BOQ57_00170 PF08220 DeoR-like helix-turn-helix domain BOQ57_00175 PF01380 SIS domain BOQ57_00180 PF03472 Autoinducer binding domain BOQ57_00180 PF00196 Bacterial regulatory proteins, luxR family BOQ57_00190 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_00195 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_00200 PF02472 Biopolymer transport protein ExbD/TolR BOQ57_00205 PF03544 Gram-negative bacterial TonB protein C-terminal BOQ57_00250 PF07969 Amidohydrolase family BOQ57_00255 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BOQ57_00260 PF01209 ubiE/COQ5 methyltransferase family BOQ57_00265 PF02036 SCP-2 sterol transfer family BOQ57_00270 PF03109 ABC1 family BOQ57_00275 PF02416 mttA/Hcf106 family BOQ57_00280 PF02416 mttA/Hcf106 family BOQ57_00285 PF00902 Sec-independent protein translocase protein (TatC) BOQ57_00290 PF01026 TatD related DNase BOQ57_00295 PF00490 Delta-aminolevulinic acid dehydratase BOQ57_00300 PF01432 Peptidase family M3 BOQ57_00305 PF03707 Bacterial signalling protein N terminal repeat BOQ57_00305 PF00563 EAL domain BOQ57_00305 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_00310 PF04445 Putative SAM-dependent methyltransferase BOQ57_00320 PF02541 Ppx/GppA phosphatase family BOQ57_00325 PF00270 DEAD/DEAH box helicase BOQ57_00325 PF00271 Helicase conserved C-terminal domain BOQ57_00330 PF00085 Thioredoxin BOQ57_00335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BOQ57_00335 PF07498 Rho termination factor, N-terminal domain BOQ57_00335 PF07497 Rho termination factor, RNA-binding domain BOQ57_00345 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BOQ57_00350 PF00175 Oxidoreductase NAD-binding domain BOQ57_00355 PF04380 Membrane fusogenic activity BOQ57_00360 PF12262 Bacterial virulence factor lipase N-terminal BOQ57_00365 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease BOQ57_00365 PF01694 Rhomboid family BOQ57_00370 PF00581 Rhodanese-like domain BOQ57_00385 PF00005 ABC transporter BOQ57_00390 PF00005 ABC transporter BOQ57_00390 PF12399 Branched-chain amino acid ATP-binding cassette transporter BOQ57_00395 PF02653 Branched-chain amino acid transport system / permease component BOQ57_00395 PF11862 Domain of unknown function (DUF3382) BOQ57_00400 PF02653 Branched-chain amino acid transport system / permease component BOQ57_00405 PF13458 Periplasmic binding protein BOQ57_00410 PF00356 Bacterial regulatory proteins, lacI family BOQ57_00415 PF11975 Family 4 glycosyl hydrolase C-terminal domain BOQ57_00415 PF02056 Family 4 glycosyl hydrolase BOQ57_00420 PF00367 phosphotransferase system, EIIB BOQ57_00420 PF02378 Phosphotransferase system, EIIC BOQ57_00425 PF00392 Bacterial regulatory proteins, gntR family BOQ57_00425 PF07702 UTRA domain BOQ57_00430 PF01590 GAF domain BOQ57_00430 PF00158 Sigma-54 interaction domain BOQ57_00435 PF00301 Rubredoxin BOQ57_00435 PF00753 Metallo-beta-lactamase superfamily BOQ57_00435 PF00258 Flavodoxin BOQ57_00440 PF18113 Rubredoxin binding C-terminal domain BOQ57_00440 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_00450 PF12801 4Fe-4S binding domain BOQ57_00455 PF03222 Tryptophan/tyrosine permease family BOQ57_00470 PF02525 Flavodoxin-like fold BOQ57_00475 PF03466 LysR substrate binding domain BOQ57_00475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_00485 PF01202 Shikimate kinase BOQ57_00495 PF05746 DALR anticodon binding domain BOQ57_00495 PF02092 Glycyl-tRNA synthetase beta subunit BOQ57_00500 PF02091 Glycyl-tRNA synthetase alpha subunit BOQ57_00505 PF03352 Methyladenine glycosylase BOQ57_00510 PF02743 Cache domain BOQ57_00510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_00510 PF00672 HAMP domain BOQ57_00515 PF00691 OmpA family BOQ57_00515 PF13488 Glycine zipper BOQ57_00520 PF01042 Endoribonuclease L-PSP BOQ57_00525 PF01206 Sulfurtransferase TusA BOQ57_00535 PF01547 Bacterial extracellular solute-binding protein BOQ57_00540 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_00540 PF00672 HAMP domain BOQ57_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_00545 PF00072 Response regulator receiver domain BOQ57_00545 PF00486 Transcriptional regulatory protein, C terminal BOQ57_00550 PF02803 Thiolase, C-terminal domain BOQ57_00550 PF00108 Thiolase, N-terminal domain BOQ57_00555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BOQ57_00555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BOQ57_00555 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_00560 PF00501 AMP-binding enzyme BOQ57_00560 PF13193 AMP-binding enzyme C-terminal domain BOQ57_00565 PF00557 Metallopeptidase family M24 BOQ57_00570 PF09186 Domain of unknown function (DUF1949) BOQ57_00570 PF01205 Uncharacterized protein family UPF0029 BOQ57_00575 PF02386 Cation transport protein BOQ57_00580 PF12724 Flavodoxin domain BOQ57_00610 PF13380 CoA binding domain BOQ57_00610 PF00583 Acetyltransferase (GNAT) family BOQ57_00610 PF13607 Succinyl-CoA ligase like flavodoxin domain BOQ57_00625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_00625 PF03466 LysR substrate binding domain BOQ57_00650 PF05552 Conserved TM helix BOQ57_00650 PF00924 Mechanosensitive ion channel BOQ57_00655 PF00440 Bacterial regulatory proteins, tetR family BOQ57_00660 PF00692 dUTPase BOQ57_00665 PF04127 DNA / pantothenate metabolism flavoprotein BOQ57_00665 PF02441 Flavoprotein BOQ57_00670 PF04002 RadC-like JAB domain BOQ57_00675 PF00830 Ribosomal L28 family BOQ57_00680 PF00471 Ribosomal protein L33 BOQ57_00690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BOQ57_00690 PF06827 Zinc finger found in FPG and IleRS BOQ57_00690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BOQ57_00695 PF04393 Protein of unknown function (DUF535) BOQ57_00700 PF01467 Cytidylyltransferase-like BOQ57_00705 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BOQ57_00710 PF00535 Glycosyl transferase family 2 BOQ57_00715 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BOQ57_00720 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BOQ57_00725 PF03611 PTS system sugar-specific permease component BOQ57_00735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_00740 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_00740 PF00356 Bacterial regulatory proteins, lacI family BOQ57_00745 PF00107 Zinc-binding dehydrogenase BOQ57_00745 PF08240 Alcohol dehydrogenase GroES-like domain BOQ57_00755 PF03748 Flagellar basal body-associated protein FliL BOQ57_00760 PF04345 Chorismate lyase BOQ57_00765 PF01040 UbiA prenyltransferase family BOQ57_00770 PF01553 Acyltransferase BOQ57_00775 PF00717 Peptidase S24-like BOQ57_00775 PF01726 LexA DNA binding domain BOQ57_00790 PF02630 SCO1/SenC BOQ57_00795 PF01554 MatE BOQ57_00800 PF00588 SpoU rRNA Methylase family BOQ57_00805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_00805 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_00805 PF16527 Two-component sensor protein CpxA, periplasmic domain BOQ57_00805 PF00672 HAMP domain BOQ57_00810 PF00486 Transcriptional regulatory protein, C terminal BOQ57_00810 PF00072 Response regulator receiver domain BOQ57_00815 PF01545 Cation efflux family BOQ57_00815 PF16916 Dimerisation domain of Zinc Transporter BOQ57_00820 PF06426 Serine acetyltransferase, N-terminal BOQ57_00820 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_00830 PF06005 Cell division protein ZapB BOQ57_00845 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BOQ57_00845 PF01367 5'-3' exonuclease, C-terminal SAM fold BOQ57_00845 PF00476 DNA polymerase family A BOQ57_00845 PF01612 3'-5' exonuclease BOQ57_00850 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_00890 PF00356 Bacterial regulatory proteins, lacI family BOQ57_00895 PF16353 Domain of unknown function(DUF4981) BOQ57_00895 PF02929 Beta galactosidase small chain BOQ57_00895 PF02837 Glycosyl hydrolases family 2, sugar binding domain BOQ57_00895 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BOQ57_00895 PF00703 Glycosyl hydrolases family 2 BOQ57_00900 PF04074 YhcH/YjgK/YiaL BOQ57_00905 PF13520 Amino acid permease BOQ57_00910 PF01588 Putative tRNA binding domain BOQ57_00915 PF13520 Amino acid permease BOQ57_00920 PF13593 SBF-like CPA transporter family (DUF4137) BOQ57_00925 PF03781 Sulfatase-modifying factor enzyme 1 BOQ57_00925 PF12867 DinB superfamily BOQ57_00935 PF00756 Putative esterase BOQ57_00940 PF08240 Alcohol dehydrogenase GroES-like domain BOQ57_00940 PF00107 Zinc-binding dehydrogenase BOQ57_00945 PF03466 LysR substrate binding domain BOQ57_00945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_00980 PF00580 UvrD/REP helicase N-terminal domain BOQ57_00980 PF13361 UvrD-like helicase C-terminal domain BOQ57_00985 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system BOQ57_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_01005 PF03466 LysR substrate binding domain BOQ57_01025 PF14001 YdfZ protein BOQ57_01050 PF06206 CpeT/CpcT family (DUF1001) BOQ57_01060 PF01810 LysE type translocator BOQ57_01065 PF04143 Sulphur transport BOQ57_01070 PF12729 Four helix bundle sensory module for signal transduction BOQ57_01070 PF00672 HAMP domain BOQ57_01070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_01075 PF00690 Cation transporter/ATPase, N-terminus BOQ57_01075 PF00689 Cation transporting ATPase, C-terminus BOQ57_01080 PF01810 LysE type translocator BOQ57_01085 PF12833 Helix-turn-helix domain BOQ57_01090 PF00892 EamA-like transporter family BOQ57_01100 PF00171 Aldehyde dehydrogenase family BOQ57_01105 PF07883 Cupin domain BOQ57_01105 PF01381 Helix-turn-helix BOQ57_01110 PF00202 Aminotransferase class-III BOQ57_01115 PF00171 Aldehyde dehydrogenase family BOQ57_01120 PF02540 NAD synthase BOQ57_01120 PF00958 GMP synthase C terminal domain BOQ57_01120 PF00117 Glutamine amidotransferase class-I BOQ57_01125 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BOQ57_01125 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BOQ57_01130 PF00294 pfkB family carbohydrate kinase BOQ57_01135 PF02082 Transcriptional regulator BOQ57_01150 PF02646 RmuC family BOQ57_01155 PF02386 Cation transport protein BOQ57_01160 PF02254 TrkA-N domain BOQ57_01160 PF02080 TrkA-C domain BOQ57_01165 PF01189 16S rRNA methyltransferase RsmB/F BOQ57_01165 PF01029 NusB family BOQ57_01170 PF02911 Formyl transferase, C-terminal domain BOQ57_01170 PF00551 Formyl transferase BOQ57_01175 PF01327 Polypeptide deformylase BOQ57_01185 PF17782 DprA winged helix domain BOQ57_01185 PF02481 DNA recombination-mediator protein A BOQ57_01190 PF04361 Protein of unknown function (DUF494) BOQ57_01195 PF01396 Topoisomerase DNA binding C4 zinc finger BOQ57_01200 PF00731 AIR carboxylase BOQ57_01205 PF01300 Telomere recombination BOQ57_01210 PF01218 Coproporphyrinogen III oxidase BOQ57_01215 PF08501 Shikimate dehydrogenase substrate binding domain BOQ57_01215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BOQ57_01215 PF01488 Shikimate / quinate 5-dehydrogenase BOQ57_01220 PF07369 Protein of unknown function (DUF1488) BOQ57_01225 PF01926 50S ribosome-binding GTPase BOQ57_01230 PF00034 Cytochrome c BOQ57_01240 PF04220 Der GTPase activator (YihI) BOQ57_01245 PF10675 Protein of unknown function (DUF2489) BOQ57_01250 PF06969 HemN C-terminal domain BOQ57_01250 PF04055 Radical SAM superfamily BOQ57_01255 PF00962 Adenosine/AMP deaminase BOQ57_01260 PF00158 Sigma-54 interaction domain BOQ57_01260 PF00072 Response regulator receiver domain BOQ57_01260 PF02954 Bacterial regulatory protein, Fis family BOQ57_01265 PF00989 PAS fold BOQ57_01265 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_01275 PF03951 Glutamine synthetase, beta-Grasp domain BOQ57_01275 PF00120 Glutamine synthetase, catalytic domain BOQ57_01285 PF03631 Virulence factor BrkB BOQ57_01290 PF03631 Virulence factor BrkB BOQ57_01295 PF02580 D-Tyr-tRNA(Tyr) deacylase BOQ57_01305 PF09500 Putative thioesterase (yiiD_Cterm) BOQ57_01305 PF00583 Acetyltransferase (GNAT) family BOQ57_01315 PF17191 RecG wedge domain BOQ57_01315 PF00271 Helicase conserved C-terminal domain BOQ57_01315 PF00270 DEAD/DEAH box helicase BOQ57_01320 PF13091 PLD-like domain BOQ57_01325 PF02447 GntP family permease BOQ57_01330 PF01202 Shikimate kinase BOQ57_01335 PF00920 Dehydratase family BOQ57_01340 PF01081 KDPG and KHG aldolase BOQ57_01345 PF00356 Bacterial regulatory proteins, lacI family BOQ57_01345 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_01355 PF01551 Peptidase family M23 BOQ57_01360 PF06415 BPG-independent PGAM N-terminus (iPGM_N) BOQ57_01360 PF01676 Metalloenzyme superfamily BOQ57_01365 PF00581 Rhodanese-like domain BOQ57_01370 PF02556 Preprotein translocase subunit SecB BOQ57_01375 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BOQ57_01375 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BOQ57_01380 PF01521 Iron-sulphur cluster biosynthesis BOQ57_01380 PF01106 NifU-like domain BOQ57_01385 PF00156 Phosphoribosyl transferase domain BOQ57_01390 PF00561 alpha/beta hydrolase fold BOQ57_01410 PF00575 S1 RNA binding domain BOQ57_01410 PF17674 HHH domain BOQ57_01410 PF09371 Tex-like protein N-terminal domain BOQ57_01410 PF16921 Tex protein YqgF-like domain BOQ57_01415 PF01272 Transcription elongation factor, GreA/GreB, C-term BOQ57_01415 PF03449 Transcription elongation factor, N-terminal BOQ57_01420 PF00072 Response regulator receiver domain BOQ57_01420 PF00486 Transcriptional regulatory protein, C terminal BOQ57_01425 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_01425 PF00672 HAMP domain BOQ57_01425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_01435 PF00338 Ribosomal protein S10p/S20e BOQ57_01440 PF00297 Ribosomal protein L3 BOQ57_01445 PF00573 Ribosomal protein L4/L1 family BOQ57_01450 PF00276 Ribosomal protein L23 BOQ57_01455 PF00181 Ribosomal Proteins L2, RNA binding domain BOQ57_01455 PF03947 Ribosomal Proteins L2, C-terminal domain BOQ57_01460 PF00203 Ribosomal protein S19 BOQ57_01465 PF00237 Ribosomal protein L22p/L17e BOQ57_01470 PF07650 KH domain BOQ57_01470 PF00189 Ribosomal protein S3, C-terminal domain BOQ57_01475 PF00252 Ribosomal protein L16p/L10e BOQ57_01480 PF00831 Ribosomal L29 protein BOQ57_01485 PF00366 Ribosomal protein S17 BOQ57_01490 PF00238 Ribosomal protein L14p/L23e BOQ57_01495 PF00467 KOW motif BOQ57_01495 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BOQ57_01500 PF00281 Ribosomal protein L5 BOQ57_01500 PF00673 ribosomal L5P family C-terminus BOQ57_01505 PF00253 Ribosomal protein S14p/S29e BOQ57_01510 PF00410 Ribosomal protein S8 BOQ57_01515 PF00347 Ribosomal protein L6 BOQ57_01520 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BOQ57_01525 PF03719 Ribosomal protein S5, C-terminal domain BOQ57_01525 PF00333 Ribosomal protein S5, N-terminal domain BOQ57_01530 PF00327 Ribosomal protein L30p/L7e BOQ57_01535 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BOQ57_01540 PF00344 SecY translocase BOQ57_01545 PF00444 Ribosomal protein L36 BOQ57_01550 PF00416 Ribosomal protein S13/S18 BOQ57_01555 PF00411 Ribosomal protein S11 BOQ57_01560 PF01479 S4 domain BOQ57_01560 PF00163 Ribosomal protein S4/S9 N-terminal domain BOQ57_01565 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BOQ57_01565 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BOQ57_01565 PF01000 RNA polymerase Rpb3/RpoA insert domain BOQ57_01570 PF01196 Ribosomal protein L17 BOQ57_01625 PF02254 TrkA-N domain BOQ57_01625 PF00999 Sodium/hydrogen exchanger family BOQ57_01630 PF02525 Flavodoxin-like fold BOQ57_01635 PF03466 LysR substrate binding domain BOQ57_01635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_01640 PF00106 short chain dehydrogenase BOQ57_01655 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BOQ57_01655 PF00326 Prolyl oligopeptidase family BOQ57_01670 PF07947 YhhN family BOQ57_01675 PF07690 Major Facilitator Superfamily BOQ57_01680 PF13533 Biotin-lipoyl like BOQ57_01685 PF03466 LysR substrate binding domain BOQ57_01685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_01695 PF00375 Sodium:dicarboxylate symporter family BOQ57_01700 PF10678 Protein of unknown function (DUF2492) BOQ57_01705 PF01914 MarC family integral membrane protein BOQ57_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_01710 PF03466 LysR substrate binding domain BOQ57_01715 PF02416 mttA/Hcf106 family BOQ57_01725 PF01464 Transglycosylase SLT domain BOQ57_01730 PF13091 PLD-like domain BOQ57_01740 PF00440 Bacterial regulatory proteins, tetR family BOQ57_01745 PF07226 Protein of unknown function (DUF1422) BOQ57_01760 PF00448 SRP54-type protein, GTPase domain BOQ57_01760 PF02881 SRP54-type protein, helical bundle domain BOQ57_01765 PF00005 ABC transporter BOQ57_01770 PF18075 FtsX extracellular domain BOQ57_01775 PF00140 Sigma-70 factor, region 1.2 BOQ57_01775 PF04542 Sigma-70 region 2 BOQ57_01775 PF04545 Sigma-70, region 4 BOQ57_01780 PF00484 Carbonic anhydrase BOQ57_01785 PF07702 UTRA domain BOQ57_01785 PF00392 Bacterial regulatory proteins, gntR family BOQ57_01790 PF01979 Amidohydrolase family BOQ57_01795 PF00491 Arginase family BOQ57_01800 PF17391 Urocanase N-terminal domain BOQ57_01800 PF17392 Urocanase C-terminal domain BOQ57_01800 PF01175 Urocanase Rossmann-like domain BOQ57_01805 PF00221 Aromatic amino acid lyase BOQ57_01810 PF01699 Sodium/calcium exchanger protein BOQ57_01815 PF00563 EAL domain BOQ57_01815 PF12792 CSS motif domain associated with EAL BOQ57_01820 PF00563 EAL domain BOQ57_01820 PF17157 Gammaproteobacterial periplasmic sensor domain BOQ57_01820 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_01850 PF00263 Bacterial type II and III secretion system protein BOQ57_01850 PF03958 Bacterial type II/III secretion system short domain BOQ57_01865 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BOQ57_01865 PF00437 Type II/IV secretion system protein BOQ57_01870 PF00482 Type II secretion system (T2SS), protein F BOQ57_01890 PF00114 Pilin (bacterial filament) BOQ57_01890 PF07963 Prokaryotic N-terminal methylation motif BOQ57_01920 PF04085 rod shape-determining protein MreC BOQ57_01925 PF04093 rod shape-determining protein MreD BOQ57_01930 PF02545 Maf-like protein BOQ57_01935 PF00575 S1 RNA binding domain BOQ57_01935 PF10150 Ribonuclease E/G family BOQ57_01940 PF13116 Protein of unknown function BOQ57_01940 PF13502 AsmA-like C-terminal region BOQ57_01950 PF00795 Carbon-nitrogen hydrolase BOQ57_01955 PF01523 Putative modulator of DNA gyrase BOQ57_01960 PF01380 SIS domain BOQ57_01960 PF01418 Helix-turn-helix domain, rpiR family BOQ57_01975 PF00367 phosphotransferase system, EIIB BOQ57_01975 PF02378 Phosphotransferase system, EIIC BOQ57_01980 PF13580 SIS domain BOQ57_01990 PF01914 MarC family integral membrane protein BOQ57_01995 PF07690 Major Facilitator Superfamily BOQ57_02005 PF00072 Response regulator receiver domain BOQ57_02010 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_02010 PF00672 HAMP domain BOQ57_02010 PF01627 Hpt domain BOQ57_02010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_02010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BOQ57_02010 PF00072 Response regulator receiver domain BOQ57_02015 PF13581 Histidine kinase-like ATPase domain BOQ57_02025 PF13426 PAS domain BOQ57_02025 PF08447 PAS fold BOQ57_02025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_02040 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) BOQ57_02045 PF04228 Putative neutral zinc metallopeptidase BOQ57_02055 PF08668 HDOD domain BOQ57_02065 PF00999 Sodium/hydrogen exchanger family BOQ57_02070 PF02965 Vitamin B12 dependent methionine synthase, activation domain BOQ57_02070 PF00809 Pterin binding enzyme BOQ57_02070 PF02607 B12 binding domain BOQ57_02070 PF02574 Homocysteine S-methyltransferase BOQ57_02070 PF02310 B12 binding domain BOQ57_02075 PF18030 RimK PreATP-grasp domain BOQ57_02075 PF08443 RimK-like ATP-grasp domain BOQ57_02080 PF05525 Branched-chain amino acid transport protein BOQ57_02090 PF00486 Transcriptional regulatory protein, C terminal BOQ57_02090 PF00072 Response regulator receiver domain BOQ57_02105 PF05935 Arylsulfotransferase (ASST) BOQ57_02105 PF17425 Arylsulfotransferase Ig-like domain BOQ57_02110 PF01117 Aerolysin toxin BOQ57_02110 PF03440 Aerolysin/Pertussis toxin (APT) domain BOQ57_02115 PF13667 ThiC-associated domain BOQ57_02115 PF01964 Radical SAM ThiC family BOQ57_02120 PF02581 Thiamine monophosphate synthase BOQ57_02125 PF00899 ThiF family BOQ57_02135 PF05690 Thiazole biosynthesis protein ThiG BOQ57_02140 PF04055 Radical SAM superfamily BOQ57_02140 PF06968 Biotin and Thiamin Synthesis associated domain BOQ57_02150 PF13036 Peptidoglycan-synthase activator LpoB BOQ57_02170 PF17151 Periplasmic sensor domain BOQ57_02170 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_02180 PF06055 Exopolysaccharide synthesis, ExoD BOQ57_02195 PF08803 Putative mono-oxygenase ydhR BOQ57_02200 PF01638 HxlR-like helix-turn-helix BOQ57_02225 PF00593 TonB dependent receptor BOQ57_02225 PF07715 TonB-dependent Receptor Plug Domain BOQ57_02240 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded BOQ57_02245 PF03692 Putative zinc- or iron-chelating domain BOQ57_02255 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase BOQ57_02260 PF02602 Uroporphyrinogen-III synthase HemD BOQ57_02265 PF03900 Porphobilinogen deaminase, C-terminal domain BOQ57_02265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BOQ57_02270 PF12633 Adenylate cyclase NT domain BOQ57_02270 PF01295 Adenylate cyclase, class-I BOQ57_02275 PF02230 Phospholipase/Carboxylesterase BOQ57_02280 PF01491 Frataxin-like domain BOQ57_02290 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BOQ57_02290 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BOQ57_02295 PF01678 Diaminopimelate epimerase BOQ57_02305 PF02899 Phage integrase, N-terminal SAM-like domain BOQ57_02305 PF00589 Phage integrase family BOQ57_02310 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_02320 PF00027 Cyclic nucleotide-binding domain BOQ57_02320 PF13545 Crp-like helix-turn-helix domain BOQ57_02330 PF07722 Peptidase C26 BOQ57_02350 PF00005 ABC transporter BOQ57_02360 PF00994 Probable molybdopterin binding domain BOQ57_02360 PF02464 Competence-damaged protein BOQ57_02365 PF01966 HD domain BOQ57_02370 PF04204 Homoserine O-succinyltransferase BOQ57_02380 PF01037 Lrp/AsnC ligand binding domain BOQ57_02385 PF00884 Sulfatase BOQ57_02400 PF02903 Alpha amylase, N-terminal ig-like domain BOQ57_02400 PF00128 Alpha amylase, catalytic domain BOQ57_02400 PF16657 Maltogenic Amylase, C-terminal domain BOQ57_02405 PF02308 MgtC family BOQ57_02425 PF00106 short chain dehydrogenase BOQ57_02430 PF03577 Peptidase family C69 BOQ57_02445 PF00465 Iron-containing alcohol dehydrogenase BOQ57_02455 PF01053 Cys/Met metabolism PLP-dependent enzyme BOQ57_02460 PF12793 Sugar transport-related sRNA regulator N-term BOQ57_02460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_02475 PF03280 Proteobacterial lipase chaperone protein BOQ57_02480 PF00561 alpha/beta hydrolase fold BOQ57_02490 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BOQ57_02490 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BOQ57_02495 PF02698 DUF218 domain BOQ57_02500 PF01752 Collagenase BOQ57_02500 PF08453 Peptidase family M9 N-terminal BOQ57_02510 PF00419 Fimbrial protein BOQ57_02520 PF13953 PapC C-terminal domain BOQ57_02520 PF13954 PapC N-terminal domain BOQ57_02520 PF00577 Outer membrane usher protein BOQ57_02525 PF02753 Pili assembly chaperone PapD, C-terminal domain BOQ57_02525 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BOQ57_02530 PF00419 Fimbrial protein BOQ57_02535 PF00419 Fimbrial protein BOQ57_02545 PF00501 AMP-binding enzyme BOQ57_02550 PF13378 Enolase C-terminal domain-like BOQ57_02555 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_02560 PF12697 Alpha/beta hydrolase family BOQ57_02565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_02565 PF16582 Middle domain of thiamine pyrophosphate BOQ57_02565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BOQ57_02570 PF00425 chorismate binding enzyme BOQ57_02575 PF01040 UbiA prenyltransferase family BOQ57_02600 PF03880 DbpA RNA binding domain BOQ57_02600 PF00270 DEAD/DEAH box helicase BOQ57_02600 PF00271 Helicase conserved C-terminal domain BOQ57_02605 PF01773 Na+ dependent nucleoside transporter N-terminus BOQ57_02605 PF07662 Na+ dependent nucleoside transporter C-terminus BOQ57_02605 PF07670 Nucleoside recognition BOQ57_02610 PF04307 LexA-binding, inner membrane-associated putative hydrolase BOQ57_02625 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BOQ57_02630 PF01544 CorA-like Mg2+ transporter protein BOQ57_02650 PF03471 Transporter associated domain BOQ57_02650 PF02080 TrkA-C domain BOQ57_02650 PF00999 Sodium/hydrogen exchanger family BOQ57_02655 PF05068 Mannitol repressor BOQ57_02660 PF01232 Mannitol dehydrogenase Rossmann domain BOQ57_02660 PF08125 Mannitol dehydrogenase C-terminal domain BOQ57_02665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_02665 PF02378 Phosphotransferase system, EIIC BOQ57_02665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BOQ57_02675 PF00440 Bacterial regulatory proteins, tetR family BOQ57_02680 PF17876 Cold shock domain BOQ57_02680 PF08206 Ribonuclease B OB domain BOQ57_02680 PF00773 RNB domain BOQ57_02685 PF03466 LysR substrate binding domain BOQ57_02685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_02690 PF00765 Autoinducer synthase BOQ57_02695 PF00196 Bacterial regulatory proteins, luxR family BOQ57_02695 PF03472 Autoinducer binding domain BOQ57_02700 PF01810 LysE type translocator BOQ57_02705 PF02872 5'-nucleotidase, C-terminal domain BOQ57_02705 PF00149 Calcineurin-like phosphoesterase BOQ57_02710 PF05433 Glycine zipper 2TM domain BOQ57_02715 PF00583 Acetyltransferase (GNAT) family BOQ57_02720 PF11756 Nitrous oxide-stimulated promoter BOQ57_02725 PF01321 Creatinase/Prolidase N-terminal domain BOQ57_02725 PF00557 Metallopeptidase family M24 BOQ57_02730 PF00392 Bacterial regulatory proteins, gntR family BOQ57_02740 PF01430 Hsp33 protein BOQ57_02745 PF01479 S4 domain BOQ57_02750 PF11356 Type II secretion system protein C BOQ57_02755 PF00263 Bacterial type II and III secretion system protein BOQ57_02755 PF03958 Bacterial type II/III secretion system short domain BOQ57_02760 PF00437 Type II/IV secretion system protein BOQ57_02765 PF00482 Type II secretion system (T2SS), protein F BOQ57_02770 PF08334 Type II secretion system (T2SS), protein G BOQ57_02770 PF07963 Prokaryotic N-terminal methylation motif BOQ57_02775 PF12019 Type II transport protein GspH BOQ57_02775 PF07963 Prokaryotic N-terminal methylation motif BOQ57_02780 PF02501 Type II secretion system (T2SS), protein I BOQ57_02780 PF07963 Prokaryotic N-terminal methylation motif BOQ57_02785 PF11612 Type II secretion system (T2SS), protein J BOQ57_02785 PF07963 Prokaryotic N-terminal methylation motif BOQ57_02790 PF03934 Type II secretion system (T2SS), protein K BOQ57_02795 PF12693 GspL periplasmic domain BOQ57_02795 PF05134 Type II secretion system (T2SS), protein L BOQ57_02800 PF04612 Type II secretion system (T2SS), protein M BOQ57_02805 PF01203 Type II secretion system (T2SS), protein N BOQ57_02810 PF00196 Bacterial regulatory proteins, luxR family BOQ57_02815 PF00579 tRNA synthetases class I (W and Y) BOQ57_02815 PF01479 S4 domain BOQ57_02820 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_02825 PF00293 NUDIX domain BOQ57_02830 PF00459 Inositol monophosphatase family BOQ57_02835 PF03222 Tryptophan/tyrosine permease family BOQ57_02840 PF01588 Putative tRNA binding domain BOQ57_02845 PF12833 Helix-turn-helix domain BOQ57_02845 PF06445 GyrI-like small molecule binding domain BOQ57_02850 PF01340 Met Apo-repressor, MetJ BOQ57_02855 PF01053 Cys/Met metabolism PLP-dependent enzyme BOQ57_02860 PF03447 Homoserine dehydrogenase, NAD binding domain BOQ57_02860 PF00742 Homoserine dehydrogenase BOQ57_02860 PF00696 Amino acid kinase family BOQ57_02865 PF00311 Phosphoenolpyruvate carboxylase BOQ57_02870 PF07687 Peptidase dimerisation domain BOQ57_02870 PF01546 Peptidase family M20/M25/M40 BOQ57_02875 PF02774 Semialdehyde dehydrogenase, dimerisation domain BOQ57_02875 PF01118 Semialdehyde dehydrogenase, NAD binding domain BOQ57_02880 PF00696 Amino acid kinase family BOQ57_02885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BOQ57_02885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BOQ57_02890 PF00764 Arginosuccinate synthase BOQ57_02895 PF14698 Argininosuccinate lyase C-terminal BOQ57_02895 PF00206 Lyase BOQ57_02920 PF14602 Hexapeptide repeat of succinyl-transferase BOQ57_02920 PF12464 Maltose acetyltransferase BOQ57_02925 PF13194 Domain of unknown function (DUF4010) BOQ57_02940 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_02945 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_02950 PF12857 TOBE-like domain BOQ57_02950 PF00005 ABC transporter BOQ57_02955 PF03466 LysR substrate binding domain BOQ57_02955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_02960 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BOQ57_02960 PF18416 N-acetylglucosamine binding protein domain 2 BOQ57_02965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_02965 PF00672 HAMP domain BOQ57_02965 PF12729 Four helix bundle sensory module for signal transduction BOQ57_03000 PF03572 Peptidase family S41 BOQ57_03000 PF07676 WD40-like Beta Propeller Repeat BOQ57_03000 PF14685 Tricorn protease PDZ domain BOQ57_03000 PF14684 Tricorn protease C1 domain BOQ57_03020 PF11230 Protein of unknown function (DUF3029) BOQ57_03025 PF04055 Radical SAM superfamily BOQ57_03035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03035 PF03466 LysR substrate binding domain BOQ57_03040 PF00155 Aminotransferase class I and II BOQ57_03045 PF02583 Metal-sensitive transcriptional repressor BOQ57_03065 PF00403 Heavy-metal-associated domain BOQ57_03070 PF08534 Redoxin BOQ57_03080 PF00270 DEAD/DEAH box helicase BOQ57_03080 PF00271 Helicase conserved C-terminal domain BOQ57_03095 PF03372 Endonuclease/Exonuclease/phosphatase family BOQ57_03100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_03100 PF08447 PAS fold BOQ57_03115 PF06062 Uncharacterised protein family (UPF0231) BOQ57_03125 PF17853 GGDEF-like domain BOQ57_03125 PF13556 PucR C-terminal helix-turn-helix domain BOQ57_03125 PF05651 Putative sugar diacid recognition BOQ57_03130 PF02447 GntP family permease BOQ57_03135 PF02595 Glycerate kinase family BOQ57_03145 PF00255 Glutathione peroxidase BOQ57_03150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03150 PF03466 LysR substrate binding domain BOQ57_03155 PF01773 Na+ dependent nucleoside transporter N-terminus BOQ57_03155 PF07662 Na+ dependent nucleoside transporter C-terminus BOQ57_03155 PF07670 Nucleoside recognition BOQ57_03160 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BOQ57_03160 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BOQ57_03165 PF00472 RF-1 domain BOQ57_03170 PF00543 Nitrogen regulatory protein P-II BOQ57_03175 PF13416 Bacterial extracellular solute-binding protein BOQ57_03185 PF00005 ABC transporter BOQ57_03185 PF08402 TOBE domain BOQ57_03190 PF04261 Dyp-type peroxidase family BOQ57_03195 PF01316 Arginine repressor, DNA binding domain BOQ57_03195 PF02863 Arginine repressor, C-terminal domain BOQ57_03200 PF00005 ABC transporter BOQ57_03205 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_03210 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_03215 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_03220 PF00056 lactate/malate dehydrogenase, NAD binding domain BOQ57_03220 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BOQ57_03230 PF08238 Sel1 repeat BOQ57_03235 PF00042 Globin BOQ57_03235 PF00970 Oxidoreductase FAD-binding domain BOQ57_03235 PF00175 Oxidoreductase NAD-binding domain BOQ57_03240 PF02082 Transcriptional regulator BOQ57_03245 PF00571 CBS domain BOQ57_03245 PF03471 Transporter associated domain BOQ57_03245 PF01595 Cyclin M transmembrane N-terminal domain BOQ57_03250 PF01578 Cytochrome C assembly protein BOQ57_03255 PF02881 SRP54-type protein, helical bundle domain BOQ57_03255 PF00448 SRP54-type protein, GTPase domain BOQ57_03255 PF02978 Signal peptide binding domain BOQ57_03260 PF00886 Ribosomal protein S16 BOQ57_03265 PF01782 RimM N-terminal domain BOQ57_03265 PF05239 PRC-barrel domain BOQ57_03270 PF01746 tRNA (Guanine-1)-methyltransferase BOQ57_03275 PF01245 Ribosomal protein L19 BOQ57_03285 PF02976 DNA mismatch repair enzyme MutH BOQ57_03295 PF00293 NUDIX domain BOQ57_03300 PF01590 GAF domain BOQ57_03300 PF00391 PEP-utilising enzyme, mobile domain BOQ57_03300 PF05524 PEP-utilising enzyme, N-terminal BOQ57_03300 PF02896 PEP-utilising enzyme, TIM barrel domain BOQ57_03305 PF01790 Prolipoprotein diacylglyceryl transferase BOQ57_03310 PF00303 Thymidylate synthase BOQ57_03315 PF06965 Na+/H+ antiporter 1 BOQ57_03325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03325 PF03466 LysR substrate binding domain BOQ57_03330 PF01022 Bacterial regulatory protein, arsR family BOQ57_03335 PF01649 Ribosomal protein S20 BOQ57_03340 PF03023 Lipid II flippase MurJ BOQ57_03345 PF01687 Riboflavin kinase BOQ57_03345 PF06574 FAD synthetase BOQ57_03350 PF06827 Zinc finger found in FPG and IleRS BOQ57_03350 PF00133 tRNA synthetases class I (I, L, M and V) BOQ57_03350 PF08264 Anticodon-binding domain of tRNA BOQ57_03355 PF01252 Signal peptidase (SPase) II BOQ57_03360 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_03365 PF02401 LytB protein BOQ57_03370 PF00114 Pilin (bacterial filament) BOQ57_03370 PF07963 Prokaryotic N-terminal methylation motif BOQ57_03400 PF01609 Transposase DDE domain BOQ57_03400 PF05598 Transposase domain (DUF772) BOQ57_03420 PF02540 NAD synthase BOQ57_03420 PF00795 Carbon-nitrogen hydrolase BOQ57_03425 PF00543 Nitrogen regulatory protein P-II BOQ57_03435 PF02664 S-Ribosylhomocysteinase (LuxS) BOQ57_03440 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_03445 PF17876 Cold shock domain BOQ57_03445 PF00773 RNB domain BOQ57_03445 PF08206 Ribonuclease B OB domain BOQ57_03445 PF00575 S1 RNA binding domain BOQ57_03445 PF08461 Ribonuclease R winged-helix domain BOQ57_03450 PF08032 RNA 2'-O ribose methyltransferase substrate binding BOQ57_03450 PF00588 SpoU rRNA Methylase family BOQ57_03460 PF13673 Acetyltransferase (GNAT) domain BOQ57_03475 PF01411 tRNA synthetases class II (A) BOQ57_03475 PF02272 DHHA1 domain BOQ57_03475 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BOQ57_03480 PF01566 Natural resistance-associated macrophage protein BOQ57_03485 PF01250 Ribosomal protein S6 BOQ57_03490 PF01084 Ribosomal protein S18 BOQ57_03495 PF03948 Ribosomal protein L9, C-terminal domain BOQ57_03495 PF01281 Ribosomal protein L9, N-terminal domain BOQ57_03500 PF00970 Oxidoreductase FAD-binding domain BOQ57_03500 PF00175 Oxidoreductase NAD-binding domain BOQ57_03515 PF00550 Phosphopantetheine attachment site BOQ57_03515 PF08659 KR domain BOQ57_03515 PF14765 Polyketide synthase dehydratase BOQ57_03515 PF00698 Acyl transferase domain BOQ57_03515 PF00109 Beta-ketoacyl synthase, N-terminal domain BOQ57_03515 PF16197 Ketoacyl-synthetase C-terminal extension BOQ57_03515 PF08990 Erythronolide synthase docking BOQ57_03515 PF02801 Beta-ketoacyl synthase, C-terminal domain BOQ57_03515 PF08240 Alcohol dehydrogenase GroES-like domain BOQ57_03520 PF09335 SNARE associated Golgi protein BOQ57_03525 PF05193 Peptidase M16 inactive domain BOQ57_03525 PF00675 Insulinase (Peptidase family M16) BOQ57_03530 PF04262 Glutamate-cysteine ligase BOQ57_03540 PF00501 AMP-binding enzyme BOQ57_03550 PF00583 Acetyltransferase (GNAT) family BOQ57_03560 PF17868 AAA lid domain BOQ57_03560 PF07728 AAA domain (dynein-related subfamily) BOQ57_03560 PF12592 Protein of unknown function (DUF3763) BOQ57_03565 PF05762 VWA domain containing CoxE-like protein BOQ57_03570 PF13188 PAS domain BOQ57_03570 PF03707 Bacterial signalling protein N terminal repeat BOQ57_03570 PF00563 EAL domain BOQ57_03570 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_03575 PF00072 Response regulator receiver domain BOQ57_03575 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_03580 PF16658 Class II release factor RF3, C-terminal domain BOQ57_03580 PF03144 Elongation factor Tu domain 2 BOQ57_03580 PF00009 Elongation factor Tu GTP binding domain BOQ57_03600 PF00583 Acetyltransferase (GNAT) family BOQ57_03605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BOQ57_03615 PF04480 Protein of unknown function (DUF559) BOQ57_03620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03620 PF03466 LysR substrate binding domain BOQ57_03625 PF04371 Porphyromonas-type peptidyl-arginine deiminase BOQ57_03630 PF01425 Amidase BOQ57_03640 PF00753 Metallo-beta-lactamase superfamily BOQ57_03655 PF00270 DEAD/DEAH box helicase BOQ57_03655 PF00271 Helicase conserved C-terminal domain BOQ57_03660 PF03466 LysR substrate binding domain BOQ57_03660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03675 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase BOQ57_03680 PF03150 Di-haem cytochrome c peroxidase BOQ57_03680 PF00034 Cytochrome c BOQ57_03695 PF00445 Ribonuclease T2 family BOQ57_03705 PF03060 Nitronate monooxygenase BOQ57_03740 PF09297 NADH pyrophosphatase zinc ribbon domain BOQ57_03740 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain BOQ57_03740 PF00293 NUDIX domain BOQ57_03745 PF00672 HAMP domain BOQ57_03745 PF16527 Two-component sensor protein CpxA, periplasmic domain BOQ57_03745 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_03745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_03750 PF00486 Transcriptional regulatory protein, C terminal BOQ57_03750 PF00072 Response regulator receiver domain BOQ57_03755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_03760 PF00005 ABC transporter BOQ57_03760 PF12704 MacB-like periplasmic core domain BOQ57_03760 PF02687 FtsX-like permease family BOQ57_03765 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_03770 PF00005 ABC transporter BOQ57_03775 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_03780 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_03785 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_03790 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BOQ57_03790 PF00326 Prolyl oligopeptidase family BOQ57_03815 PF08335 GlnD PII-uridylyltransferase BOQ57_03815 PF03710 Glutamate-ammonia ligase adenylyltransferase BOQ57_03825 PF02743 Cache domain BOQ57_03825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_03825 PF00672 HAMP domain BOQ57_03830 PF00027 Cyclic nucleotide-binding domain BOQ57_03830 PF00520 Ion transport protein BOQ57_03835 PF08239 Bacterial SH3 domain BOQ57_03840 PF00171 Aldehyde dehydrogenase family BOQ57_03840 PF14850 DNA-binding domain of Proline dehydrogenase BOQ57_03840 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BOQ57_03840 PF01619 Proline dehydrogenase BOQ57_03845 PF09297 NADH pyrophosphatase zinc ribbon domain BOQ57_03845 PF00293 NUDIX domain BOQ57_03850 PF01208 Uroporphyrinogen decarboxylase (URO-D) BOQ57_03855 PF00480 ROK family BOQ57_03860 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_03860 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BOQ57_03865 PF00162 Phosphoglycerate kinase BOQ57_03870 PF01116 Fructose-bisphosphate aldolase class-II BOQ57_03875 PF01266 FAD dependent oxidoreductase BOQ57_03885 PF02683 Cytochrome C biogenesis protein transmembrane region BOQ57_03885 PF11412 Disulphide bond corrector protein DsbC BOQ57_03890 PF03091 CutA1 divalent ion tolerance protein BOQ57_03905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_03905 PF03466 LysR substrate binding domain BOQ57_03910 PF01571 Aminomethyltransferase folate-binding domain BOQ57_03915 PF03937 Flavinator of succinate dehydrogenase BOQ57_03925 PF00890 FAD binding domain BOQ57_03925 PF02910 Fumarate reductase flavoprotein C-term BOQ57_03930 PF04542 Sigma-70 region 2 BOQ57_03930 PF08281 Sigma-70, region 4 BOQ57_03935 PF03872 Anti sigma-E protein RseA, N-terminal domain BOQ57_03935 PF03873 Anti sigma-E protein RseA, C-terminal domain BOQ57_03940 PF03888 MucB/RseB N-terminal domain BOQ57_03940 PF17188 MucB/RseB C-terminal domain BOQ57_03950 PF06421 GTP-binding protein LepA C-terminus BOQ57_03950 PF03144 Elongation factor Tu domain 2 BOQ57_03950 PF00679 Elongation factor G C-terminus BOQ57_03950 PF00009 Elongation factor Tu GTP binding domain BOQ57_03955 PF10502 Signal peptidase, peptidase S26 BOQ57_03960 PF00035 Double-stranded RNA binding motif BOQ57_03960 PF14622 Ribonuclease-III-like BOQ57_03965 PF07650 KH domain BOQ57_03965 PF01926 50S ribosome-binding GTPase BOQ57_03970 PF02565 Recombination protein O C terminal BOQ57_03970 PF11967 Recombination protein O N terminal BOQ57_03975 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BOQ57_03985 PF01116 Fructose-bisphosphate aldolase class-II BOQ57_03990 PF01979 Amidohydrolase family BOQ57_03995 PF03610 PTS system fructose IIA component BOQ57_04000 PF03613 PTS system mannose/fructose/sorbose family IID component BOQ57_04005 PF03609 PTS system sorbose-specific iic component BOQ57_04010 PF03830 PTS system sorbose subfamily IIB component BOQ57_04015 PF01380 SIS domain BOQ57_04020 PF08013 Tagatose 6 phosphate kinase BOQ57_04025 PF08220 DeoR-like helix-turn-helix domain BOQ57_04025 PF00455 DeoR C terminal sensor domain BOQ57_04030 PF01510 N-acetylmuramoyl-L-alanine amidase BOQ57_04035 PF07308 Protein of unknown function (DUF1456) BOQ57_04040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_04040 PF01627 Hpt domain BOQ57_04040 PF00672 HAMP domain BOQ57_04040 PF00072 Response regulator receiver domain BOQ57_04040 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BOQ57_04040 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_04045 PF05958 tRNA (Uracil-5-)-methyltransferase BOQ57_04045 PF01938 TRAM domain BOQ57_04050 PF02824 TGS domain BOQ57_04050 PF04607 Region found in RelA / SpoT proteins BOQ57_04050 PF13291 ACT domain BOQ57_04055 PF03819 MazG nucleotide pyrophosphohydrolase domain BOQ57_04060 PF00117 Glutamine amidotransferase class-I BOQ57_04060 PF06418 CTP synthase N-terminus BOQ57_04065 PF00113 Enolase, C-terminal TIM barrel domain BOQ57_04065 PF03952 Enolase, N-terminal domain BOQ57_04070 PF04977 Septum formation initiator BOQ57_04075 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BOQ57_04080 PF02542 YgbB family BOQ57_04085 PF01142 tRNA pseudouridine synthase D (TruD) BOQ57_04090 PF01975 Survival protein SurE BOQ57_04100 PF09335 SNARE associated Golgi protein BOQ57_04105 PF01476 LysM domain BOQ57_04105 PF01551 Peptidase family M23 BOQ57_04110 PF04539 Sigma-70 region 3 BOQ57_04110 PF04542 Sigma-70 region 2 BOQ57_04110 PF04545 Sigma-70, region 4 BOQ57_04110 PF00140 Sigma-70 factor, region 1.2 BOQ57_04115 PF00814 Glycoprotease family BOQ57_04120 PF01165 Ribosomal protein S21 BOQ57_04125 PF09424 Yqey-like protein BOQ57_04130 PF08278 DNA primase DnaG DnaB-binding BOQ57_04130 PF10410 DnaB-helicase binding domain of primase BOQ57_04130 PF08275 DNA primase catalytic core, N-terminal domain BOQ57_04130 PF01807 CHC2 zinc finger BOQ57_04135 PF00140 Sigma-70 factor, region 1.2 BOQ57_04135 PF04542 Sigma-70 region 2 BOQ57_04135 PF03979 Sigma-70 factor, region 1.1 BOQ57_04135 PF04546 Sigma-70, non-essential region BOQ57_04135 PF04545 Sigma-70, region 4 BOQ57_04135 PF04539 Sigma-70 region 3 BOQ57_04145 PF00128 Alpha amylase, catalytic domain BOQ57_04160 PF02843 Phosphoribosylglycinamide synthetase, C domain BOQ57_04160 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BOQ57_04160 PF02844 Phosphoribosylglycinamide synthetase, N domain BOQ57_04165 PF01808 AICARFT/IMPCHase bienzyme BOQ57_04165 PF02142 MGS-like domain BOQ57_04170 PF13411 MerR HTH family regulatory protein BOQ57_04180 PF03889 Alternative ribosome-rescue factor A BOQ57_04185 PF04055 Radical SAM superfamily BOQ57_04185 PF06969 HemN C-terminal domain BOQ57_04190 PF01725 Ham1 family BOQ57_04195 PF07690 Major Facilitator Superfamily BOQ57_04200 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BOQ57_04200 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BOQ57_04210 PF13302 Acetyltransferase (GNAT) domain BOQ57_04215 PF13302 Acetyltransferase (GNAT) domain BOQ57_04220 PF03413 Peptidase propeptide and YPEB domain BOQ57_04220 PF04151 Bacterial pre-peptidase C-terminal domain BOQ57_04220 PF01447 Thermolysin metallopeptidase, catalytic domain BOQ57_04220 PF07504 Fungalysin/Thermolysin Propeptide Motif BOQ57_04220 PF02868 Thermolysin metallopeptidase, alpha-helical domain BOQ57_04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_04225 PF03466 LysR substrate binding domain BOQ57_04230 PF07690 Major Facilitator Superfamily BOQ57_04235 PF00267 Gram-negative porin BOQ57_04240 PF03605 Anaerobic c4-dicarboxylate membrane transporter BOQ57_04245 PF00206 Lyase BOQ57_04245 PF10415 Fumarase C C-terminus BOQ57_04250 PF04186 FxsA cytoplasmic membrane protein BOQ57_04260 PF00166 Chaperonin 10 Kd subunit BOQ57_04265 PF00118 TCP-1/cpn60 chaperonin family BOQ57_04275 PF00563 EAL domain BOQ57_04275 PF03707 Bacterial signalling protein N terminal repeat BOQ57_04275 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_04275 PF13188 PAS domain BOQ57_04285 PF00849 RNA pseudouridylate synthase BOQ57_04290 PF18339 RapA N-terminal Tudor like domain 1 BOQ57_04290 PF18337 RapA N-terminal Tudor like domain BOQ57_04290 PF00176 SNF2 family N-terminal domain BOQ57_04290 PF00271 Helicase conserved C-terminal domain BOQ57_04290 PF12137 RNA polymerase recycling family C-terminal BOQ57_04320 PF02867 Ribonucleotide reductase, barrel domain BOQ57_04320 PF08343 Ribonucleotide reductase N-terminal BOQ57_04320 PF00317 Ribonucleotide reductase, all-alpha domain BOQ57_04330 PF13638 PIN domain BOQ57_04330 PF02562 PhoH-like protein BOQ57_04335 PF00005 ABC transporter BOQ57_04340 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_04360 PF00694 Aconitase C-terminal domain BOQ57_04365 PF00330 Aconitase family (aconitate hydratase) BOQ57_04370 PF00180 Isocitrate/isopropylmalate dehydrogenase BOQ57_04375 PF08502 LeuA allosteric (dimerisation) domain BOQ57_04375 PF00682 HMGL-like BOQ57_04385 PF01569 PAP2 superfamily BOQ57_04390 PF03033 Glycosyltransferase family 28 N-terminal domain BOQ57_04390 PF04101 Glycosyltransferase family 28 C-terminal domain BOQ57_04395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BOQ57_04395 PF00205 Thiamine pyrophosphate enzyme, central domain BOQ57_04395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_04400 PF10369 Small subunit of acetolactate synthase BOQ57_04405 PF01515 Phosphate acetyl/butaryl transferase BOQ57_04405 PF07085 DRTGG domain BOQ57_04410 PF00871 Acetokinase family BOQ57_04415 PF04217 Protein of unknown function, DUF412 BOQ57_04420 PF03887 YfbU domain BOQ57_04425 PF00578 AhpC/TSA family BOQ57_04430 PF01842 ACT domain BOQ57_04435 PF00701 Dihydrodipicolinate synthetase family BOQ57_04440 PF06804 NlpB/DapX lipoprotein BOQ57_04445 PF01259 SAICAR synthetase BOQ57_04455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_04455 PF03466 LysR substrate binding domain BOQ57_04460 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) BOQ57_04480 PF00989 PAS fold BOQ57_04480 PF18415 Histidine kinase receptor ArcB trans-membrane domain BOQ57_04480 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_04480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_04480 PF01627 Hpt domain BOQ57_04480 PF00072 Response regulator receiver domain BOQ57_04485 PF13286 Phosphohydrolase-associated domain BOQ57_04485 PF01966 HD domain BOQ57_04495 PF00072 Response regulator receiver domain BOQ57_04495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_04495 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_04495 PF09456 RcsC Alpha-Beta-Loop (ABL) BOQ57_04500 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_04500 PF00563 EAL domain BOQ57_04500 PF03707 Bacterial signalling protein N terminal repeat BOQ57_04505 PF00672 HAMP domain BOQ57_04505 PF12729 Four helix bundle sensory module for signal transduction BOQ57_04505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_04510 PF02357 Transcription termination factor nusG BOQ57_04515 PF03180 NLPA lipoprotein BOQ57_04520 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_04525 PF00005 ABC transporter BOQ57_04525 PF09383 NIL domain BOQ57_04540 PF00480 ROK family BOQ57_04545 PF08331 Domain of unknown function (DUF1730) BOQ57_04550 PF03853 YjeF-related protein N-terminus BOQ57_04550 PF01256 Carbohydrate kinase BOQ57_04555 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BOQ57_04560 PF01520 N-acetylmuramoyl-L-alanine amidase BOQ57_04565 PF01119 DNA mismatch repair protein, C-terminal domain BOQ57_04565 PF08676 MutL C terminal dimerisation domain BOQ57_04575 PF17209 Hfq protein BOQ57_04580 PF01926 50S ribosome-binding GTPase BOQ57_04580 PF13167 GTP-binding GTPase N-terminal BOQ57_04580 PF16360 GTP-binding GTPase Middle Region BOQ57_04585 PF01145 SPFH domain / Band 7 family BOQ57_04585 PF12221 Bacterial membrane protein N terminal BOQ57_04590 PF01145 SPFH domain / Band 7 family BOQ57_04595 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) BOQ57_04600 PF00348 Polyprenyl synthetase BOQ57_04605 PF00829 Ribosomal prokaryotic L21 protein BOQ57_04610 PF01016 Ribosomal L27 protein BOQ57_04615 PF01018 GTP1/OBG BOQ57_04615 PF01926 50S ribosome-binding GTPase BOQ57_04625 PF00501 AMP-binding enzyme BOQ57_04625 PF13193 AMP-binding enzyme C-terminal domain BOQ57_04645 PF00296 Luciferase-like monooxygenase BOQ57_04655 PF00149 Calcineurin-like phosphoesterase BOQ57_04660 PF04379 ApaG domain BOQ57_04665 PF00398 Ribosomal RNA adenine dimethylase BOQ57_04670 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BOQ57_04675 PF09312 SurA N-terminal domain BOQ57_04675 PF00639 PPIC-type PPIASE domain BOQ57_04680 PF03968 OstA-like protein BOQ57_04680 PF04453 LPS transport system D BOQ57_04685 PF01636 Phosphotransferase enzyme family BOQ57_04690 PF00483 Nucleotidyl transferase BOQ57_04695 PF00226 DnaJ domain BOQ57_04695 PF05099 Tellurite resistance protein TerB BOQ57_04700 PF00860 Permease family BOQ57_04710 PF00005 ABC transporter BOQ57_04710 PF12848 ABC transporter BOQ57_04725 PF01048 Phosphorylase superfamily BOQ57_04730 PF01464 Transglycosylase SLT domain BOQ57_04745 PF03466 LysR substrate binding domain BOQ57_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_04750 PF01048 Phosphorylase superfamily BOQ57_04755 PF07662 Na+ dependent nucleoside transporter C-terminus BOQ57_04755 PF01773 Na+ dependent nucleoside transporter N-terminus BOQ57_04755 PF07670 Nucleoside recognition BOQ57_04760 PF01791 DeoC/LacD family aldolase BOQ57_04770 PF01370 NAD dependent epimerase/dehydratase family BOQ57_04780 PF00005 ABC transporter BOQ57_04785 PF01032 FecCD transport family BOQ57_04795 PF06228 Haem utilisation ChuX/HutX BOQ57_04800 PF01243 Pyridoxamine 5'-phosphate oxidase BOQ57_04820 PF07715 TonB-dependent Receptor Plug Domain BOQ57_04820 PF00593 TonB dependent receptor BOQ57_04830 PF12832 MFS_1 like family BOQ57_04835 PF13443 Cro/C1-type HTH DNA-binding domain BOQ57_04845 PF00989 PAS fold BOQ57_04845 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_04850 PF00704 Glycosyl hydrolases family 18 BOQ57_04850 PF08329 Chitinase A, N-terminal domain BOQ57_04855 PF17945 Beta/Gamma crystallin BOQ57_04855 PF12561 ToxR activated gene A lipoprotein domain BOQ57_04860 PF18416 N-acetylglucosamine binding protein domain 2 BOQ57_04860 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading BOQ57_04865 PF13847 Methyltransferase domain BOQ57_04870 PF13545 Crp-like helix-turn-helix domain BOQ57_04870 PF00027 Cyclic nucleotide-binding domain BOQ57_04875 PF02566 OsmC-like protein BOQ57_04890 PF00485 Phosphoribulokinase / Uridine kinase family BOQ57_04895 PF00893 Small Multidrug Resistance protein BOQ57_04900 PF00892 EamA-like transporter family BOQ57_04905 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase BOQ57_04910 PF01522 Polysaccharide deacetylase BOQ57_04915 PF00551 Formyl transferase BOQ57_04915 PF02911 Formyl transferase, C-terminal domain BOQ57_04915 PF01370 NAD dependent epimerase/dehydratase family BOQ57_04920 PF00535 Glycosyl transferase family 2 BOQ57_04925 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BOQ57_04930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BOQ57_04930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BOQ57_04930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BOQ57_04935 PF06794 Uncharacterised protein family (UPF0270) BOQ57_04940 PF00360 Phytochrome region BOQ57_04940 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_04940 PF01590 GAF domain BOQ57_04940 PF00563 EAL domain BOQ57_04945 PF00561 alpha/beta hydrolase fold BOQ57_04950 PF00072 Response regulator receiver domain BOQ57_04950 PF01584 CheW-like domain BOQ57_04960 PF09526 Probable metal-binding protein (DUF2387) BOQ57_04965 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_04970 PF04102 SlyX BOQ57_04980 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BOQ57_04980 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_04985 PF00158 Sigma-54 interaction domain BOQ57_04985 PF00072 Response regulator receiver domain BOQ57_04985 PF02954 Bacterial regulatory protein, Fis family BOQ57_05005 PF00149 Calcineurin-like phosphoesterase BOQ57_05005 PF02872 5'-nucleotidase, C-terminal domain BOQ57_05010 PF12792 CSS motif domain associated with EAL BOQ57_05010 PF00563 EAL domain BOQ57_05020 PF03796 DnaB-like helicase C terminal domain BOQ57_05020 PF00772 DnaB-like helicase N terminal domain BOQ57_05025 PF00842 Alanine racemase, C-terminal domain BOQ57_05025 PF01168 Alanine racemase, N-terminal domain BOQ57_05030 PF12838 4Fe-4S dicluster domain BOQ57_05040 PF00563 EAL domain BOQ57_05040 PF01590 GAF domain BOQ57_05040 PF00989 PAS fold BOQ57_05040 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_05055 PF15976 CS1-pili formation C-terminal BOQ57_05055 PF16967 E-set like domain BOQ57_05065 PF00196 Bacterial regulatory proteins, luxR family BOQ57_05065 PF00072 Response regulator receiver domain BOQ57_05075 PF01695 IstB-like ATP binding protein BOQ57_05080 PF00665 Integrase core domain BOQ57_05110 PF00266 Aminotransferase class-V BOQ57_05115 PF00072 Response regulator receiver domain BOQ57_05115 PF01339 CheB methylesterase BOQ57_05120 PF03975 CheD chemotactic sensory transduction BOQ57_05125 PF01739 CheR methyltransferase, SAM binding domain BOQ57_05125 PF03705 CheR methyltransferase, all-alpha domain BOQ57_05130 PF00672 HAMP domain BOQ57_05130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_05130 PF02203 Tar ligand binding domain homologue BOQ57_05135 PF01584 CheW-like domain BOQ57_05140 PF12729 Four helix bundle sensory module for signal transduction BOQ57_05140 PF00672 HAMP domain BOQ57_05140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_05145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_05145 PF01584 CheW-like domain BOQ57_05145 PF02895 Signal transducing histidine kinase, homodimeric domain BOQ57_05145 PF07194 P2 response regulator binding domain BOQ57_05145 PF01627 Hpt domain BOQ57_05155 PF00072 Response regulator receiver domain BOQ57_05160 PF00672 HAMP domain BOQ57_05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_05160 PF02743 Cache domain BOQ57_05170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05170 PF03466 LysR substrate binding domain BOQ57_05175 PF01810 LysE type translocator BOQ57_05185 PF12392 Collagenase BOQ57_05185 PF01136 Peptidase family U32 BOQ57_05195 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BOQ57_05195 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BOQ57_05200 PF00730 HhH-GPD superfamily base excision DNA repair protein BOQ57_05200 PF06029 AlkA N-terminal domain BOQ57_05200 PF02805 Metal binding domain of Ada BOQ57_05200 PF12833 Helix-turn-helix domain BOQ57_05210 PF02074 Carboxypeptidase Taq (M32) metallopeptidase BOQ57_05235 PF00106 short chain dehydrogenase BOQ57_05240 PF03573 outer membrane porin, OprD family BOQ57_05245 PF02743 Cache domain BOQ57_05245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_05245 PF00672 HAMP domain BOQ57_05275 PF00800 Prephenate dehydratase BOQ57_05275 PF01817 Chorismate mutase type II BOQ57_05305 PF08349 Protein of unknown function (DUF1722) BOQ57_05310 PF13411 MerR HTH family regulatory protein BOQ57_05315 PF00875 DNA photolyase BOQ57_05315 PF03441 FAD binding domain of DNA photolyase BOQ57_05325 PF00106 short chain dehydrogenase BOQ57_05365 PF00210 Ferritin-like domain BOQ57_05370 PF03063 Prismane/CO dehydrogenase family BOQ57_05375 PF00970 Oxidoreductase FAD-binding domain BOQ57_05375 PF00175 Oxidoreductase NAD-binding domain BOQ57_05375 PF00042 Globin BOQ57_05380 PF16363 GDP-mannose 4,6 dehydratase BOQ57_05385 PF13462 Thioredoxin BOQ57_05385 PF06965 Na+/H+ antiporter 1 BOQ57_05395 PF00196 Bacterial regulatory proteins, luxR family BOQ57_05395 PF03472 Autoinducer binding domain BOQ57_05400 PF05638 Type VI secretion system effector, Hcp BOQ57_05410 PF04717 Type VI secretion system, phage-baseplate injector BOQ57_05440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05440 PF03466 LysR substrate binding domain BOQ57_05445 PF03306 Alpha-acetolactate decarboxylase BOQ57_05450 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BOQ57_05450 PF00205 Thiamine pyrophosphate enzyme, central domain BOQ57_05450 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_05455 PF01965 DJ-1/PfpI family BOQ57_05460 PF02558 Ketopantoate reductase PanE/ApbA BOQ57_05460 PF08546 Ketopantoate reductase PanE/ApbA C terminal BOQ57_05465 PF04461 Protein of unknown function (DUF520) BOQ57_05470 PF03502 Nucleoside-specific channel-forming protein, Tsx BOQ57_05475 PF07690 Major Facilitator Superfamily BOQ57_05485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BOQ57_05495 PF05175 Methyltransferase small domain BOQ57_05500 PF01722 BolA-like protein BOQ57_05505 PF11973 NQRA C-terminal domain BOQ57_05505 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) BOQ57_05510 PF03116 NQR2, RnfD, RnfE family BOQ57_05515 PF04205 FMN-binding domain BOQ57_05520 PF02508 Rnf-Nqr subunit, membrane protein BOQ57_05525 PF02508 Rnf-Nqr subunit, membrane protein BOQ57_05530 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_05530 PF00970 Oxidoreductase FAD-binding domain BOQ57_05530 PF00175 Oxidoreductase NAD-binding domain BOQ57_05535 PF02424 ApbE family BOQ57_05550 PF00817 impB/mucB/samB family BOQ57_05550 PF11799 impB/mucB/samB family C-terminal domain BOQ57_05550 PF11798 IMS family HHH motif BOQ57_05555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_05555 PF00672 HAMP domain BOQ57_05560 PF03466 LysR substrate binding domain BOQ57_05560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05570 PF04241 Protein of unknown function (DUF423) BOQ57_05575 PF01728 FtsJ-like methyltransferase BOQ57_05575 PF18125 RlmM ferredoxin-like domain BOQ57_05585 PF00180 Isocitrate/isopropylmalate dehydrogenase BOQ57_05585 PF18324 Hypothetical protein TT1725 BOQ57_05590 PF01367 5'-3' exonuclease, C-terminal SAM fold BOQ57_05590 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BOQ57_05595 PF11892 Domain of unknown function (DUF3412) BOQ57_05595 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases BOQ57_05595 PF03641 Possible lysine decarboxylase BOQ57_05600 PF07694 5TMR of 5TMR-LYT BOQ57_05600 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_05610 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BOQ57_05610 PF14489 QueF-like protein BOQ57_05615 PF07348 Syd protein (SUKH-2) BOQ57_05620 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) BOQ57_05645 PF04287 tRNA pseudouridine synthase C BOQ57_05650 PF00849 RNA pseudouridylate synthase BOQ57_05655 PF00258 Flavodoxin BOQ57_05660 PF02264 LamB porin BOQ57_05665 PF07148 Maltose operon periplasmic protein precursor (MalM) BOQ57_05670 PF02378 Phosphotransferase system, EIIC BOQ57_05670 PF00367 phosphotransferase system, EIIB BOQ57_05675 PF11944 Protein of unknown function (DUF3461) BOQ57_05680 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BOQ57_05680 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_05680 PF14602 Hexapeptide repeat of succinyl-transferase BOQ57_05685 PF01966 HD domain BOQ57_05685 PF08335 GlnD PII-uridylyltransferase BOQ57_05685 PF01909 Nucleotidyltransferase domain BOQ57_05685 PF01842 ACT domain BOQ57_05690 PF00557 Metallopeptidase family M24 BOQ57_05695 PF00318 Ribosomal protein S2 BOQ57_05700 PF00889 Elongation factor TS BOQ57_05705 PF00696 Amino acid kinase family BOQ57_05710 PF01765 Ribosome recycling factor BOQ57_05715 PF01255 Putative undecaprenyl diphosphate synthase BOQ57_05725 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BOQ57_05725 PF13288 DXP reductoisomerase C-terminal domain BOQ57_05725 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BOQ57_05730 PF17820 PDZ domain BOQ57_05730 PF02163 Peptidase family M50 BOQ57_05735 PF01103 Surface antigen BOQ57_05735 PF07244 Surface antigen variable number repeat BOQ57_05740 PF03938 Outer membrane protein (OmpH-like) BOQ57_05745 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_05745 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BOQ57_05750 PF07977 FabA-like domain BOQ57_05755 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BOQ57_05755 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_05760 PF02684 Lipid-A-disaccharide synthetase BOQ57_05765 PF01351 Ribonuclease HII BOQ57_05770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BOQ57_05770 PF07733 Bacterial DNA polymerase III alpha NTPase domain BOQ57_05770 PF01336 OB-fold nucleic acid binding domain BOQ57_05770 PF14579 Helix-hairpin-helix motif BOQ57_05770 PF02811 PHP domain BOQ57_05775 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BOQ57_05780 PF18500 CadC C-terminal domain 1 BOQ57_05780 PF00486 Transcriptional regulatory protein, C terminal BOQ57_05785 PF13520 Amino acid permease BOQ57_05790 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BOQ57_05790 PF01276 Orn/Lys/Arg decarboxylase, major domain BOQ57_05790 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BOQ57_05795 PF08543 Phosphomethylpyrimidine kinase BOQ57_05805 PF03466 LysR substrate binding domain BOQ57_05805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05815 PF12706 Beta-lactamase superfamily domain BOQ57_05820 PF03466 LysR substrate binding domain BOQ57_05820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05825 PF12146 Serine aminopeptidase, S33 BOQ57_05830 PF12146 Serine aminopeptidase, S33 BOQ57_05835 PF03466 LysR substrate binding domain BOQ57_05835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_05840 PF13520 Amino acid permease BOQ57_05845 PF13302 Acetyltransferase (GNAT) domain BOQ57_05850 PF16326 ABC transporter C-terminal domain BOQ57_05850 PF00005 ABC transporter BOQ57_05850 PF12848 ABC transporter BOQ57_05860 PF05649 Peptidase family M13 BOQ57_05860 PF01431 Peptidase family M13 BOQ57_05865 PF01171 PP-loop family BOQ57_05865 PF11734 TilS substrate C-terminal domain BOQ57_05865 PF09179 TilS substrate binding domain BOQ57_05870 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_05875 PF02080 TrkA-C domain BOQ57_05875 PF00999 Sodium/hydrogen exchanger family BOQ57_05875 PF02254 TrkA-N domain BOQ57_05895 PF00072 Response regulator receiver domain BOQ57_05895 PF00196 Bacterial regulatory proteins, luxR family BOQ57_05905 PF00128 Alpha amylase, catalytic domain BOQ57_05920 PF00535 Glycosyl transferase family 2 BOQ57_05935 PF03734 L,D-transpeptidase catalytic domain BOQ57_05935 PF01471 Putative peptidoglycan binding domain BOQ57_05940 PF05951 Bacterial protein of unknown function (DUF882) BOQ57_05950 PF03458 UPF0126 domain BOQ57_05960 PF02463 RecF/RecN/SMC N terminal domain BOQ57_05960 PF06470 SMC proteins Flexible Hinge Domain BOQ57_05965 PF04354 ZipA, C-terminal FtsZ-binding domain BOQ57_05970 PF12826 Helix-hairpin-helix motif BOQ57_05970 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BOQ57_05970 PF03120 NAD-dependent DNA ligase OB-fold domain BOQ57_05970 PF01653 NAD-dependent DNA ligase adenylation domain BOQ57_05970 PF00533 BRCA1 C Terminus (BRCT) domain BOQ57_05980 PF13597 Anaerobic ribonucleoside-triphosphate reductase BOQ57_05980 PF03477 ATP cone domain BOQ57_05990 PF01679 Proteolipid membrane potential modulator BOQ57_06015 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_06015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_06020 PF01047 MarR family BOQ57_06030 PF03390 2-hydroxycarboxylate transporter family BOQ57_06035 PF03949 Malic enzyme, NAD binding domain BOQ57_06035 PF00390 Malic enzyme, N-terminal domain BOQ57_06040 PF17203 Single cache domain 3 BOQ57_06040 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BOQ57_06040 PF00989 PAS fold BOQ57_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_06045 PF00072 Response regulator receiver domain BOQ57_06045 PF12431 Transcriptional regulator BOQ57_06050 PF00892 EamA-like transporter family BOQ57_06060 PF00171 Aldehyde dehydrogenase family BOQ57_06065 PF02954 Bacterial regulatory protein, Fis family BOQ57_06065 PF00158 Sigma-54 interaction domain BOQ57_06065 PF01590 GAF domain BOQ57_06070 PF02770 Acyl-CoA dehydrogenase, middle domain BOQ57_06070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BOQ57_06070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BOQ57_06075 PF02515 CoA-transferase family III BOQ57_06080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_06085 PF00486 Transcriptional regulatory protein, C terminal BOQ57_06085 PF00072 Response regulator receiver domain BOQ57_06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_06090 PF00989 PAS fold BOQ57_06090 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_06090 PF11808 Phosphate regulon sensor protein PhoR BOQ57_06095 PF12849 PBP superfamily domain BOQ57_06100 PF01435 Peptidase family M48 BOQ57_06110 PF00480 ROK family BOQ57_06115 PF03932 CutC family BOQ57_06125 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_06125 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BOQ57_06130 PF00005 ABC transporter BOQ57_06150 PF00293 NUDIX domain BOQ57_06160 PF08534 Redoxin BOQ57_06165 PF01699 Sodium/calcium exchanger protein BOQ57_06170 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BOQ57_06170 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BOQ57_06175 PF01235 Sodium:alanine symporter family BOQ57_06185 PF00860 Permease family BOQ57_06190 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_06190 PF00072 Response regulator receiver domain BOQ57_06195 PF10692 Protein of unknown function (DUF2498) BOQ57_06200 PF01554 MatE BOQ57_06205 PF12833 Helix-turn-helix domain BOQ57_06210 PF00390 Malic enzyme, N-terminal domain BOQ57_06210 PF03949 Malic enzyme, NAD binding domain BOQ57_06215 PF00691 OmpA family BOQ57_06215 PF01389 OmpA-like transmembrane domain BOQ57_06220 PF01389 OmpA-like transmembrane domain BOQ57_06220 PF00691 OmpA family BOQ57_06225 PF00691 OmpA family BOQ57_06225 PF01389 OmpA-like transmembrane domain BOQ57_06240 PF00209 Sodium:neurotransmitter symporter family BOQ57_06245 PF01734 Patatin-like phospholipase BOQ57_06250 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_06255 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_06255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_06260 PF00873 AcrB/AcrD/AcrF family BOQ57_06270 PF11842 Domain of unknown function (DUF3362) BOQ57_06270 PF08497 Radical SAM N-terminal BOQ57_06270 PF04055 Radical SAM superfamily BOQ57_06285 PF12833 Helix-turn-helix domain BOQ57_06290 PF05656 Protein of unknown function (DUF805) BOQ57_06310 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BOQ57_06320 PF02075 Crossover junction endodeoxyribonuclease RuvC BOQ57_06325 PF00230 Major intrinsic protein BOQ57_06330 PF01464 Transglycosylase SLT domain BOQ57_06330 PF10145 Phage-related minor tail protein BOQ57_06330 PF01551 Peptidase family M23 BOQ57_06335 PF00128 Alpha amylase, catalytic domain BOQ57_06340 PF01551 Peptidase family M23 BOQ57_06355 PF13091 PLD-like domain BOQ57_06355 PF13396 Phospholipase_D-nuclease N-terminal BOQ57_06365 PF01842 ACT domain BOQ57_06365 PF00551 Formyl transferase BOQ57_06370 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BOQ57_06380 PF00085 Thioredoxin BOQ57_06385 PF01648 4'-phosphopantetheinyl transferase superfamily BOQ57_06390 PF00877 NlpC/P60 family BOQ57_06395 PF05971 RNA methyltransferase BOQ57_06410 PF01476 LysM domain BOQ57_06410 PF03734 L,D-transpeptidase catalytic domain BOQ57_06410 PF17969 L,D-transpeptidase C-terminal domain BOQ57_06420 PF00873 AcrB/AcrD/AcrF family BOQ57_06425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_06425 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_06430 PF00072 Response regulator receiver domain BOQ57_06430 PF00486 Transcriptional regulatory protein, C terminal BOQ57_06435 PF13426 PAS domain BOQ57_06435 PF00672 HAMP domain BOQ57_06435 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_06440 PF00893 Small Multidrug Resistance protein BOQ57_06445 PF00893 Small Multidrug Resistance protein BOQ57_06455 PF06130 Phosphate propanoyltransferase BOQ57_06460 PF00936 BMC domain BOQ57_06465 PF13187 4Fe-4S dicluster domain BOQ57_06465 PF04055 Radical SAM superfamily BOQ57_06470 PF02901 Pyruvate formate lyase-like BOQ57_06470 PF01228 Glycine radical BOQ57_06475 PF00171 Aldehyde dehydrogenase family BOQ57_06475 PF00465 Iron-containing alcohol dehydrogenase BOQ57_06485 PF00171 Aldehyde dehydrogenase family BOQ57_06485 PF00465 Iron-containing alcohol dehydrogenase BOQ57_06490 PF00936 BMC domain BOQ57_06495 PF00936 BMC domain BOQ57_06500 PF00936 BMC domain BOQ57_06520 PF03466 LysR substrate binding domain BOQ57_06520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_06525 PF02634 FdhD/NarQ family BOQ57_06530 PF00384 Molybdopterin oxidoreductase BOQ57_06545 PF00440 Bacterial regulatory proteins, tetR family BOQ57_06550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BOQ57_06550 PF02770 Acyl-CoA dehydrogenase, middle domain BOQ57_06550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BOQ57_06550 PF09317 Domain of unknown function (DUF1974) BOQ57_06555 PF00873 AcrB/AcrD/AcrF family BOQ57_06565 PF02887 Pyruvate kinase, alpha/beta domain BOQ57_06565 PF00224 Pyruvate kinase, barrel domain BOQ57_06570 PF01418 Helix-turn-helix domain, rpiR family BOQ57_06570 PF01380 SIS domain BOQ57_06575 PF02685 Glucokinase BOQ57_06585 PF00486 Transcriptional regulatory protein, C terminal BOQ57_06585 PF00072 Response regulator receiver domain BOQ57_06590 PF00664 ABC transporter transmembrane region BOQ57_06590 PF00005 ABC transporter BOQ57_06590 PF03412 Peptidase C39 family BOQ57_06600 PF00005 ABC transporter BOQ57_06600 PF00664 ABC transporter transmembrane region BOQ57_06600 PF03412 Peptidase C39 family BOQ57_06610 PF02794 RTX toxin acyltransferase family BOQ57_06615 PF16671 Actin cross-linking domain BOQ57_06615 PF12146 Serine aminopeptidase, S33 BOQ57_06615 PF11647 Membrane Localization Domain BOQ57_06615 PF11713 Peptidase C80 family BOQ57_06615 PF07634 RtxA repeat BOQ57_06625 PF18693 TRAM domain BOQ57_06625 PF00919 Uncharacterized protein family UPF0004 BOQ57_06625 PF04055 Radical SAM superfamily BOQ57_06630 PF00072 Response regulator receiver domain BOQ57_06640 PF02049 Flagellar hook-basal body complex protein FliE BOQ57_06645 PF08345 Flagellar M-ring protein C-terminal BOQ57_06645 PF01514 Secretory protein of YscJ/FliF family BOQ57_06650 PF14842 FliG N-terminal domain BOQ57_06650 PF14841 FliG middle domain BOQ57_06650 PF01706 FliG C-terminal domain BOQ57_06660 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BOQ57_06660 PF18269 T3SS EscN ATPase C-terminal domain BOQ57_06680 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BOQ57_06680 PF02154 Flagellar motor switch protein FliM BOQ57_06685 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BOQ57_06690 PF04347 Flagellar biosynthesis protein, FliO BOQ57_06695 PF00813 FliP family BOQ57_06700 PF01313 Bacterial export proteins, family 3 BOQ57_06705 PF01311 Bacterial export proteins, family 1 BOQ57_06710 PF01312 FlhB HrpN YscU SpaS Family BOQ57_06715 PF00771 FHIPEP family BOQ57_06720 PF00448 SRP54-type protein, GTPase domain BOQ57_06725 PF10609 NUBPL iron-transfer P-loop NTPase BOQ57_06730 PF04545 Sigma-70, region 4 BOQ57_06730 PF04542 Sigma-70 region 2 BOQ57_06730 PF04539 Sigma-70 region 3 BOQ57_06735 PF00072 Response regulator receiver domain BOQ57_06740 PF04344 Chemotaxis phosphatase, CheZ BOQ57_06745 PF01627 Hpt domain BOQ57_06745 PF07194 P2 response regulator binding domain BOQ57_06745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_06745 PF02895 Signal transducing histidine kinase, homodimeric domain BOQ57_06745 PF01584 CheW-like domain BOQ57_06750 PF01339 CheB methylesterase BOQ57_06750 PF00072 Response regulator receiver domain BOQ57_06755 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_06760 PF13677 Membrane MotB of proton-channel complex MotA/MotB BOQ57_06760 PF00691 OmpA family BOQ57_06765 PF13614 AAA domain BOQ57_06775 PF01584 CheW-like domain BOQ57_06785 PF00005 ABC transporter BOQ57_06790 PF03379 CcmB protein BOQ57_06795 PF01578 Cytochrome C assembly protein BOQ57_06800 PF04995 Heme exporter protein D (CcmD) BOQ57_06805 PF03100 CcmE BOQ57_06810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BOQ57_06810 PF01578 Cytochrome C assembly protein BOQ57_06815 PF08534 Redoxin BOQ57_06820 PF03918 Cytochrome C biogenesis protein BOQ57_06825 PF03918 Cytochrome C biogenesis protein BOQ57_06830 PF04333 MlaA lipoprotein BOQ57_06835 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BOQ57_06835 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BOQ57_06840 PF00462 Glutaredoxin BOQ57_06845 PF01029 NusB family BOQ57_06845 PF01189 16S rRNA methyltransferase RsmB/F BOQ57_06860 PF01243 Pyridoxamine 5'-phosphate oxidase BOQ57_06860 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BOQ57_06865 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_06875 PF13508 Acetyltransferase (GNAT) domain BOQ57_06885 PF08007 Cupin superfamily protein BOQ57_06890 PF00206 Lyase BOQ57_06890 PF08328 Adenylosuccinate lyase C-terminal BOQ57_06895 PF04356 Protein of unknown function (DUF489) BOQ57_06905 PF00293 NUDIX domain BOQ57_06910 PF00849 RNA pseudouridylate synthase BOQ57_06920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BOQ57_06925 PF07690 Major Facilitator Superfamily BOQ57_06930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BOQ57_06930 PF02378 Phosphotransferase system, EIIC BOQ57_06930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_06950 PF00583 Acetyltransferase (GNAT) family BOQ57_06960 PF13411 MerR HTH family regulatory protein BOQ57_06965 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BOQ57_06965 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_06970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_06970 PF00356 Bacterial regulatory proteins, lacI family BOQ57_06975 PF02378 Phosphotransferase system, EIIC BOQ57_06975 PF00367 phosphotransferase system, EIIB BOQ57_06980 PF00155 Aminotransferase class I and II BOQ57_07000 PF01238 Phosphomannose isomerase type I BOQ57_07005 PF12833 Helix-turn-helix domain BOQ57_07010 PF00180 Isocitrate/isopropylmalate dehydrogenase BOQ57_07015 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_07020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_07020 PF03466 LysR substrate binding domain BOQ57_07040 PF01668 SmpB protein BOQ57_07045 PF03364 Polyketide cyclase / dehydrase and lipid transport BOQ57_07055 PF13460 NAD(P)H-binding BOQ57_07060 PF04355 SmpA / OmlA family BOQ57_07065 PF00465 Iron-containing alcohol dehydrogenase BOQ57_07070 PF01048 Phosphorylase superfamily BOQ57_07075 PF00849 RNA pseudouridylate synthase BOQ57_07080 PF01156 Inosine-uridine preferring nucleoside hydrolase BOQ57_07095 PF07509 Protein of unknown function (DUF1523) BOQ57_07100 PF00672 HAMP domain BOQ57_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_07105 PF01810 LysE type translocator BOQ57_07115 PF00999 Sodium/hydrogen exchanger family BOQ57_07115 PF03471 Transporter associated domain BOQ57_07115 PF02080 TrkA-C domain BOQ57_07125 PF03471 Transporter associated domain BOQ57_07125 PF00999 Sodium/hydrogen exchanger family BOQ57_07125 PF02080 TrkA-C domain BOQ57_07130 PF02557 D-alanyl-D-alanine carboxypeptidase BOQ57_07135 PF07687 Peptidase dimerisation domain BOQ57_07135 PF01546 Peptidase family M20/M25/M40 BOQ57_07140 PF03960 ArsC family BOQ57_07145 PF03466 LysR substrate binding domain BOQ57_07145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_07155 PF03606 C4-dicarboxylate anaerobic carrier BOQ57_07160 PF01546 Peptidase family M20/M25/M40 BOQ57_07160 PF07687 Peptidase dimerisation domain BOQ57_07170 PF03605 Anaerobic c4-dicarboxylate membrane transporter BOQ57_07175 PF01336 OB-fold nucleic acid binding domain BOQ57_07175 PF00152 tRNA synthetases class II (D, K and N) BOQ57_07195 PF06968 Biotin and Thiamin Synthesis associated domain BOQ57_07195 PF04055 Radical SAM superfamily BOQ57_07200 PF00155 Aminotransferase class I and II BOQ57_07205 PF12697 Alpha/beta hydrolase family BOQ57_07205 PF08241 Methyltransferase domain BOQ57_07215 PF01435 Peptidase family M48 BOQ57_07220 PF13426 PAS domain BOQ57_07220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_07220 PF08447 PAS fold BOQ57_07225 PF03476 MOSC N-terminal beta barrel domain BOQ57_07225 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_07225 PF03476 MOSC N-terminal beta barrel domain BOQ57_07225 PF03473 MOSC domain BOQ57_07225 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_07225 PF03473 MOSC domain BOQ57_07230 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BOQ57_07230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BOQ57_07230 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_07235 PF10371 Domain of unknown function BOQ57_07235 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BOQ57_07235 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BOQ57_07235 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BOQ57_07235 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_07255 PF01554 MatE BOQ57_07275 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_07285 PF00465 Iron-containing alcohol dehydrogenase BOQ57_07295 PF08359 YsiA-like protein, C-terminal region BOQ57_07295 PF00440 Bacterial regulatory proteins, tetR family BOQ57_07300 PF00171 Aldehyde dehydrogenase family BOQ57_07310 PF00877 NlpC/P60 family BOQ57_07315 PF12563 Hemolytic toxin N terminal BOQ57_07315 PF07968 Leukocidin/Hemolysin toxin family BOQ57_07320 PF03466 LysR substrate binding domain BOQ57_07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_07325 PF10417 C-terminal domain of 1-Cys peroxiredoxin BOQ57_07325 PF00578 AhpC/TSA family BOQ57_07345 PF08003 Protein of unknown function (DUF1698) BOQ57_07350 PF13649 Methyltransferase domain BOQ57_07360 PF02938 GAD domain BOQ57_07360 PF00152 tRNA synthetases class II (D, K and N) BOQ57_07360 PF01336 OB-fold nucleic acid binding domain BOQ57_07365 PF01709 Transcriptional regulator BOQ57_07370 PF08019 Phosphoethanolamine transferase EptA/EptB BOQ57_07370 PF00884 Sulfatase BOQ57_07375 PF00480 ROK family BOQ57_07375 PF01047 MarR family BOQ57_07380 PF01979 Amidohydrolase family BOQ57_07385 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase BOQ57_07390 PF02378 Phosphotransferase system, EIIC BOQ57_07390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BOQ57_07390 PF00367 phosphotransferase system, EIIB BOQ57_07395 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain BOQ57_07395 PF03173 Putative carbohydrate binding domain BOQ57_07395 PF02838 Glycosyl hydrolase family 20, domain 2 BOQ57_07395 PF00728 Glycosyl hydrolase family 20, catalytic domain BOQ57_07400 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BOQ57_07400 PF00749 tRNA synthetases class I (E and Q), catalytic domain BOQ57_07405 PF01475 Ferric uptake regulator family BOQ57_07415 PF00258 Flavodoxin BOQ57_07420 PF01402 Ribbon-helix-helix protein, copG family BOQ57_07430 PF12697 Alpha/beta hydrolase family BOQ57_07435 PF03925 SeqA protein C-terminal domain BOQ57_07435 PF17206 SeqA protein N-terminal domain BOQ57_07440 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BOQ57_07440 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BOQ57_07440 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BOQ57_07440 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BOQ57_07450 PF01047 MarR family BOQ57_07465 PF13406 Transglycosylase SLT domain BOQ57_07470 PF01066 CDP-alcohol phosphatidyltransferase BOQ57_07475 PF00005 ABC transporter BOQ57_07485 PF13416 Bacterial extracellular solute-binding protein BOQ57_07490 PF00403 Heavy-metal-associated domain BOQ57_07490 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_07490 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_07495 PF02627 Carboxymuconolactone decarboxylase family BOQ57_07505 PF01625 Peptide methionine sulfoxide reductase BOQ57_07520 PF01103 Surface antigen BOQ57_07520 PF07244 Surface antigen variable number repeat BOQ57_07520 PF17243 POTRA domain TamA domain 1 BOQ57_07525 PF04357 TamB, inner membrane protein subunit of TAM complex BOQ57_07545 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BOQ57_07550 PF03707 Bacterial signalling protein N terminal repeat BOQ57_07550 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_07550 PF00563 EAL domain BOQ57_07555 PF01464 Transglycosylase SLT domain BOQ57_07555 PF14718 Soluble lytic murein transglycosylase L domain BOQ57_07560 PF00356 Bacterial regulatory proteins, lacI family BOQ57_07570 PF03061 Thioesterase superfamily BOQ57_07580 PF03372 Endonuclease/Exonuclease/phosphatase family BOQ57_07585 PF01476 LysM domain BOQ57_07585 PF01464 Transglycosylase SLT domain BOQ57_07590 PF16123 Hydroxyacylglutathione hydrolase C-terminus BOQ57_07590 PF00753 Metallo-beta-lactamase superfamily BOQ57_07595 PF08241 Methyltransferase domain BOQ57_07600 PF00075 RNase H BOQ57_07605 PF00929 Exonuclease BOQ57_07615 PF11849 Domain of unknown function (DUF3369) BOQ57_07620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BOQ57_07620 PF09317 Domain of unknown function (DUF1974) BOQ57_07620 PF02770 Acyl-CoA dehydrogenase, middle domain BOQ57_07620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BOQ57_07625 PF13580 SIS domain BOQ57_07630 PF13230 Glutamine amidotransferases class-II BOQ57_07640 PF01933 Uncharacterised protein family UPF0052 BOQ57_07650 PF00072 Response regulator receiver domain BOQ57_07650 PF17149 Periplasmic sensor domain found in signal transduction proteins BOQ57_07650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_07650 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_07650 PF01627 Hpt domain BOQ57_07650 PF00672 HAMP domain BOQ57_07660 PF00196 Bacterial regulatory proteins, luxR family BOQ57_07660 PF00072 Response regulator receiver domain BOQ57_07665 PF00672 HAMP domain BOQ57_07665 PF07730 Histidine kinase BOQ57_07665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_07665 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term BOQ57_07670 PF06463 Molybdenum Cofactor Synthesis C BOQ57_07670 PF04055 Radical SAM superfamily BOQ57_07675 PF13187 4Fe-4S dicluster domain BOQ57_07675 PF00037 4Fe-4S binding domain BOQ57_07675 PF12800 4Fe-4S binding domain BOQ57_07685 PF01568 Molydopterin dinucleotide binding domain BOQ57_07685 PF10518 TAT (twin-arginine translocation) pathway signal sequence BOQ57_07685 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_07685 PF00384 Molybdopterin oxidoreductase BOQ57_07690 PF12838 4Fe-4S dicluster domain BOQ57_07690 PF12800 4Fe-4S binding domain BOQ57_07695 PF13237 4Fe-4S dicluster domain BOQ57_07695 PF12801 4Fe-4S binding domain BOQ57_07700 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BOQ57_07705 PF03264 NapC/NirT cytochrome c family, N-terminal region BOQ57_07710 PF00994 Probable molybdopterin binding domain BOQ57_07715 PF01967 MoaC family BOQ57_07720 PF02597 ThiS family BOQ57_07725 PF02391 MoaE protein BOQ57_07735 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_07740 PF00005 ABC transporter BOQ57_07740 PF03459 TOBE domain BOQ57_07745 PF00561 alpha/beta hydrolase fold BOQ57_07750 PF00899 ThiF family BOQ57_07755 PF00994 Probable molybdopterin binding domain BOQ57_07755 PF03453 MoeA N-terminal region (domain I and II) BOQ57_07755 PF03454 MoeA C-terminal region (domain IV) BOQ57_07760 PF01227 GTP cyclohydrolase I BOQ57_07765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_07765 PF00672 HAMP domain BOQ57_07765 PF17200 Single Cache domain 2 BOQ57_07770 PF01268 Formate--tetrahydrofolate ligase BOQ57_07780 PF03466 LysR substrate binding domain BOQ57_07780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_07785 PF04264 YceI-like domain BOQ57_07810 PF07687 Peptidase dimerisation domain BOQ57_07810 PF01546 Peptidase family M20/M25/M40 BOQ57_07825 PF17810 Arginine decarboxylase helical bundle domain BOQ57_07825 PF17944 Arginine decarboxylase C-terminal helical extension BOQ57_07825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BOQ57_07840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_07840 PF00672 HAMP domain BOQ57_07850 PF01042 Endoribonuclease L-PSP BOQ57_07855 PF03313 Serine dehydratase alpha chain BOQ57_07860 PF13309 HTH domain BOQ57_07860 PF08348 YheO-like PAS domain BOQ57_07865 PF00300 Histidine phosphatase superfamily (branch 1) BOQ57_07870 PF01844 HNH endonuclease BOQ57_07880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_07890 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BOQ57_07890 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BOQ57_07895 PF00849 RNA pseudouridylate synthase BOQ57_07895 PF01479 S4 domain BOQ57_07900 PF09101 Exotoxin A binding BOQ57_07900 PF09009 Exotoxin A catalytic BOQ57_07900 PF09102 Exotoxin A, targeting BOQ57_07905 PF07690 Major Facilitator Superfamily BOQ57_07915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_07915 PF03466 LysR substrate binding domain BOQ57_07920 PF07690 Major Facilitator Superfamily BOQ57_07930 PF10689 Protein of unknown function (DUF2496) BOQ57_07945 PF04391 Protein of unknown function (DUF533) BOQ57_07955 PF00392 Bacterial regulatory proteins, gntR family BOQ57_07955 PF00155 Aminotransferase class I and II BOQ57_07960 PF01654 Cytochrome bd terminal oxidase subunit I BOQ57_07965 PF02322 Cytochrome bd terminal oxidase subunit II BOQ57_07975 PF07690 Major Facilitator Superfamily BOQ57_07980 PF00248 Aldo/keto reductase family BOQ57_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_08005 PF03466 LysR substrate binding domain BOQ57_08010 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BOQ57_08010 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BOQ57_08015 PF00230 Major intrinsic protein BOQ57_08020 PF07690 Major Facilitator Superfamily BOQ57_08025 PF08220 DeoR-like helix-turn-helix domain BOQ57_08025 PF00455 DeoR C terminal sensor domain BOQ57_08030 PF01266 FAD dependent oxidoreductase BOQ57_08030 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BOQ57_08035 PF03009 Glycerophosphoryl diester phosphodiesterase family BOQ57_08040 PF00793 DAHP synthetase I family BOQ57_08045 PF01817 Chorismate mutase type II BOQ57_08045 PF02153 Prephenate dehydrogenase BOQ57_08050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_08050 PF03466 LysR substrate binding domain BOQ57_08055 PF04219 Protein of unknown function, DUF BOQ57_08060 PF03974 Ecotin BOQ57_08080 PF00326 Prolyl oligopeptidase family BOQ57_08080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain BOQ57_08085 PF07715 TonB-dependent Receptor Plug Domain BOQ57_08085 PF00593 TonB dependent receptor BOQ57_08090 PF00884 Sulfatase BOQ57_08090 PF11893 Domain of unknown function (DUF3413) BOQ57_08095 PF07208 Protein of unknown function (DUF1414) BOQ57_08100 PF04245 37-kD nucleoid-associated bacterial protein BOQ57_08105 PF01547 Bacterial extracellular solute-binding protein BOQ57_08110 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_08110 PF14785 Maltose transport system permease protein MalF P2 domain BOQ57_08115 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_08120 PF08402 TOBE domain BOQ57_08120 PF00005 ABC transporter BOQ57_08125 PF03976 Polyphosphate kinase 2 (PPK2) BOQ57_08130 PF00561 alpha/beta hydrolase fold BOQ57_08140 PF01594 AI-2E family transporter BOQ57_08145 PF01206 Sulfurtransferase TusA BOQ57_08150 PF01435 Peptidase family M48 BOQ57_08150 PF13181 Tetratricopeptide repeat BOQ57_08155 PF00578 AhpC/TSA family BOQ57_08160 PF03960 ArsC family BOQ57_08175 PF04336 Acyl carrier protein phosphodiesterase BOQ57_08180 PF01979 Amidohydrolase family BOQ57_08185 PF03956 Lysine exporter LysO BOQ57_08190 PF00005 ABC transporter BOQ57_08195 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_08200 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_08205 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_08215 PF04055 Radical SAM superfamily BOQ57_08220 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_08220 PF00563 EAL domain BOQ57_08220 PF03707 Bacterial signalling protein N terminal repeat BOQ57_08225 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_08225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_08230 PF07703 Alpha-2-macroglobulin bait region domain BOQ57_08230 PF00207 Alpha-2-macroglobulin family BOQ57_08230 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BOQ57_08230 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BOQ57_08230 PF17962 Bacterial macroglobulin domain 6 BOQ57_08230 PF01835 MG2 domain BOQ57_08230 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BOQ57_08230 PF07678 A-macroglobulin TED domain BOQ57_08230 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BOQ57_08235 PF00912 Transglycosylase BOQ57_08235 PF06832 Penicillin-Binding Protein C-terminus Family BOQ57_08235 PF00905 Penicillin binding protein transpeptidase domain BOQ57_08245 PF02568 Thiamine biosynthesis protein (ThiI) BOQ57_08245 PF02926 THUMP domain BOQ57_08255 PF03458 UPF0126 domain BOQ57_08265 PF07196 Flagellin hook IN motif BOQ57_08265 PF00700 Bacterial flagellin C-terminal helical region BOQ57_08265 PF00669 Bacterial flagellin N-terminal helical region BOQ57_08270 PF07196 Flagellin hook IN motif BOQ57_08270 PF00669 Bacterial flagellin N-terminal helical region BOQ57_08270 PF00700 Bacterial flagellin C-terminal helical region BOQ57_08280 PF07196 Flagellin hook IN motif BOQ57_08280 PF02465 Flagellar hook-associated protein 2 N-terminus BOQ57_08280 PF07195 Flagellar hook-associated protein 2 C-terminus BOQ57_08285 PF02561 Flagellar protein FliS BOQ57_08300 PF02348 Cytidylyltransferase BOQ57_08305 PF00483 Nucleotidyl transferase BOQ57_08320 PF02350 UDP-N-acetylglucosamine 2-epimerase BOQ57_08325 PF03102 NeuB family BOQ57_08325 PF08666 SAF domain BOQ57_08335 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BOQ57_08340 PF02719 Polysaccharide biosynthesis protein BOQ57_08345 PF01497 Periplasmic binding protein BOQ57_08355 PF01048 Phosphorylase superfamily BOQ57_08365 PF02535 ZIP Zinc transporter BOQ57_08370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_08370 PF00672 HAMP domain BOQ57_08375 PF00459 Inositol monophosphatase family BOQ57_08385 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_08385 PF00043 Glutathione S-transferase, C-terminal domain BOQ57_08390 PF07690 Major Facilitator Superfamily BOQ57_08400 PF05164 Cell division protein ZapA BOQ57_08405 PF03695 Uncharacterised protein family (UPF0149) BOQ57_08410 PF01494 FAD binding domain BOQ57_08415 PF01494 FAD binding domain BOQ57_08420 PF01571 Aminomethyltransferase folate-binding domain BOQ57_08420 PF08669 Glycine cleavage T-protein C-terminal barrel domain BOQ57_08425 PF01597 Glycine cleavage H-protein BOQ57_08430 PF02347 Glycine cleavage system P-protein BOQ57_08450 PF06953 Arsenical resistance operon trans-acting repressor ArsD BOQ57_08455 PF02374 Anion-transporting ATPase BOQ57_08460 PF01758 Sodium Bile acid symporter family BOQ57_08465 PF03960 ArsC family BOQ57_08470 PF08241 Methyltransferase domain BOQ57_08480 PF07690 Major Facilitator Superfamily BOQ57_08485 PF13192 Thioredoxin domain BOQ57_08485 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_08490 PF10417 C-terminal domain of 1-Cys peroxiredoxin BOQ57_08490 PF00578 AhpC/TSA family BOQ57_08495 PF00571 CBS domain BOQ57_08500 PF02547 Queuosine biosynthesis protein BOQ57_08505 PF01702 Queuine tRNA-ribosyltransferase BOQ57_08510 PF02699 Preprotein translocase subunit BOQ57_08515 PF02355 Protein export membrane protein BOQ57_08515 PF07549 SecD/SecF GG Motif BOQ57_08515 PF13721 SecD export protein N-terminal TM region BOQ57_08520 PF02355 Protein export membrane protein BOQ57_08520 PF07549 SecD/SecF GG Motif BOQ57_08530 PF07719 Tetratricopeptide repeat BOQ57_08530 PF13181 Tetratricopeptide repeat BOQ57_08555 PF00588 SpoU rRNA Methylase family BOQ57_08560 PF02082 Transcriptional regulator BOQ57_08565 PF00266 Aminotransferase class-V BOQ57_08570 PF01592 NifU-like N terminal domain BOQ57_08575 PF01521 Iron-sulphur cluster biosynthesis BOQ57_08580 PF07743 HSCB C-terminal oligomerisation domain BOQ57_08585 PF00012 Hsp70 protein BOQ57_08590 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_08595 PF00883 Cytosol aminopeptidase family, catalytic domain BOQ57_08595 PF12404 Peptidase BOQ57_08600 PF12404 Peptidase BOQ57_08600 PF00883 Cytosol aminopeptidase family, catalytic domain BOQ57_08605 PF00334 Nucleoside diphosphate kinase BOQ57_08610 PF04055 Radical SAM superfamily BOQ57_08620 PF13464 Domain of unknown function (DUF4115) BOQ57_08625 PF04551 GcpE protein BOQ57_08630 PF13393 Histidyl-tRNA synthetase BOQ57_08630 PF03129 Anticodon binding domain BOQ57_08635 PF09976 Tetratricopeptide repeat-like domain BOQ57_08640 PF13360 PQQ-like domain BOQ57_08645 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BOQ57_08645 PF01926 50S ribosome-binding GTPase BOQ57_08650 PF07191 zinc-ribbons BOQ57_08660 PF01464 Transglycosylase SLT domain BOQ57_08660 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_08665 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BOQ57_08665 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BOQ57_08665 PF02769 AIR synthase related protein, C-terminal domain BOQ57_08670 PF00361 Proton-conducting membrane transporter BOQ57_08675 PF00361 Proton-conducting membrane transporter BOQ57_08680 PF00361 Proton-conducting membrane transporter BOQ57_08680 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BOQ57_08685 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BOQ57_08690 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BOQ57_08695 PF12838 4Fe-4S dicluster domain BOQ57_08700 PF00146 NADH dehydrogenase BOQ57_08705 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BOQ57_08705 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_08705 PF00384 Molybdopterin oxidoreductase BOQ57_08710 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BOQ57_08710 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BOQ57_08720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BOQ57_08720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BOQ57_08725 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BOQ57_08730 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BOQ57_08735 PF13677 Membrane MotB of proton-channel complex MotA/MotB BOQ57_08735 PF00691 OmpA family BOQ57_08740 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_08760 PF04536 TPM domain BOQ57_08770 PF03411 Penicillin-insensitive murein endopeptidase BOQ57_08780 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) BOQ57_08785 PF00248 Aldo/keto reductase family BOQ57_08800 PF01212 Beta-eliminating lyase BOQ57_08810 PF00072 Response regulator receiver domain BOQ57_08815 PF03466 LysR substrate binding domain BOQ57_08815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_08825 PF00563 EAL domain BOQ57_08825 PF13188 PAS domain BOQ57_08825 PF03707 Bacterial signalling protein N terminal repeat BOQ57_08825 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_08830 PF00881 Nitroreductase family BOQ57_08845 PF07690 Major Facilitator Superfamily BOQ57_08850 PF03466 LysR substrate binding domain BOQ57_08850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_08855 PF03466 LysR substrate binding domain BOQ57_08855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_08860 PF00925 GTP cyclohydrolase II BOQ57_08870 PF02224 Cytidylate kinase BOQ57_08875 PF00575 S1 RNA binding domain BOQ57_08880 PF00216 Bacterial DNA-binding protein BOQ57_08890 PF18073 Rubredoxin metal binding domain BOQ57_08895 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BOQ57_08910 PF06508 Queuosine biosynthesis protein QueC BOQ57_08915 PF04055 Radical SAM superfamily BOQ57_08920 PF12843 Putative quorum-sensing-regulated virulence factor BOQ57_08925 PF01923 Cobalamin adenosyltransferase BOQ57_08930 PF00816 H-NS histone family BOQ57_08935 PF03553 Na+/H+ antiporter family BOQ57_08940 PF00265 Thymidine kinase BOQ57_08950 PF10722 Putative bacterial sensory transduction regulator BOQ57_08965 PF05638 Type VI secretion system effector, Hcp BOQ57_08970 PF04717 Type VI secretion system, phage-baseplate injector BOQ57_09040 PF07724 AAA domain (Cdc48 subfamily) BOQ57_09040 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_09040 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_09040 PF17871 AAA lid domain BOQ57_09045 PF02954 Bacterial regulatory protein, Fis family BOQ57_09045 PF00158 Sigma-54 interaction domain BOQ57_09045 PF02830 V4R domain BOQ57_09045 PF06505 Activator of aromatic catabolism BOQ57_09075 PF04717 Type VI secretion system, phage-baseplate injector BOQ57_09100 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BOQ57_09100 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BOQ57_09105 PF00313 'Cold-shock' DNA-binding domain BOQ57_09110 PF02617 ATP-dependent Clp protease adaptor protein ClpS BOQ57_09115 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_09115 PF02861 Clp amino terminal domain, pathogenicity island component BOQ57_09115 PF07724 AAA domain (Cdc48 subfamily) BOQ57_09115 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_09115 PF17871 AAA lid domain BOQ57_09120 PF01176 Translation initiation factor 1A / IF-1 BOQ57_09125 PF04377 Arginine-tRNA-protein transferase, C terminus BOQ57_09125 PF04376 Arginine-tRNA-protein transferase, N terminus BOQ57_09130 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BOQ57_09135 PF05433 Glycine zipper 2TM domain BOQ57_09140 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_09140 PF17158 Membrane-associated sensor, integral membrane domain BOQ57_09145 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_09155 PF01037 Lrp/AsnC ligand binding domain BOQ57_09160 PF09397 Ftsk gamma domain BOQ57_09160 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BOQ57_09160 PF17854 FtsK alpha domain BOQ57_09160 PF01580 FtsK/SpoIIIE family BOQ57_09165 PF03548 Outer membrane lipoprotein carrier protein LolA BOQ57_09170 PF12002 MgsA AAA+ ATPase C terminal BOQ57_09170 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_09170 PF16193 AAA C-terminal domain BOQ57_09180 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BOQ57_09180 PF02403 Seryl-tRNA synthetase N-terminal domain BOQ57_09185 PF02674 Colicin V production protein BOQ57_09190 PF00156 Phosphoribosyl transferase domain BOQ57_09195 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) BOQ57_09200 PF00005 ABC transporter BOQ57_09205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_09205 PF00005 ABC transporter BOQ57_09210 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_09210 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_09215 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_09220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_09225 PF02954 Bacterial regulatory protein, Fis family BOQ57_09225 PF00158 Sigma-54 interaction domain BOQ57_09230 PF04012 PspA/IM30 family BOQ57_09235 PF06667 Phage shock protein B BOQ57_09245 PF04317 YcjX-like family, DUF463 BOQ57_09250 PF05128 Domain of unknown function (DUF697) BOQ57_09255 PF00351 Biopterin-dependent aromatic amino acid hydroxylase BOQ57_09260 PF01329 Pterin 4 alpha carbinolamine dehydratase BOQ57_09265 PF01329 Pterin 4 alpha carbinolamine dehydratase BOQ57_09270 PF01329 Pterin 4 alpha carbinolamine dehydratase BOQ57_09275 PF18024 Helix-turn-helix domain BOQ57_09275 PF00158 Sigma-54 interaction domain BOQ57_09280 PF13689 YfiR/HmsC-like BOQ57_09285 PF17152 Periplasmic sensor domain BOQ57_09285 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_09290 PF00691 OmpA family BOQ57_09295 PF03741 Integral membrane protein TerC family BOQ57_09305 PF08891 YfcL protein BOQ57_09310 PF00501 AMP-binding enzyme BOQ57_09315 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BOQ57_09315 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region BOQ57_09320 PF04172 LrgB-like family BOQ57_09325 PF03788 LrgA family BOQ57_09340 PF08411 Exonuclease C-terminal BOQ57_09340 PF00929 Exonuclease BOQ57_09345 PF13356 Arm DNA-binding domain BOQ57_09345 PF00589 Phage integrase family BOQ57_09345 PF14659 Phage integrase, N-terminal SAM-like domain BOQ57_09380 PF03120 NAD-dependent DNA ligase OB-fold domain BOQ57_09380 PF01653 NAD-dependent DNA ligase adenylation domain BOQ57_09380 PF12826 Helix-hairpin-helix motif BOQ57_09380 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BOQ57_09380 PF00533 BRCA1 C Terminus (BRCT) domain BOQ57_09395 PF00717 Peptidase S24-like BOQ57_09395 PF01726 LexA DNA binding domain BOQ57_09400 PF01381 Helix-turn-helix BOQ57_09450 PF05866 Endodeoxyribonuclease RusA BOQ57_09475 PF07471 Phage DNA packaging protein Nu1 BOQ57_09480 PF02413 Caudovirales tail fibre assembly protein, lambda gpK BOQ57_09495 PF00574 Clp protease BOQ57_09580 PF02610 L-arabinose isomerase BOQ57_09580 PF11762 L-arabinose isomerase C-terminal domain BOQ57_09585 PF00596 Class II Aldolase and Adducin N-terminal domain BOQ57_09590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BOQ57_09595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_09600 PF00005 ABC transporter BOQ57_09605 PF02653 Branched-chain amino acid transport system / permease component BOQ57_09610 PF02311 AraC-like ligand binding domain BOQ57_09610 PF12833 Helix-turn-helix domain BOQ57_09615 PF03466 LysR substrate binding domain BOQ57_09615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_09620 PF02678 Pirin BOQ57_09620 PF05726 Pirin C-terminal cupin domain BOQ57_09625 PF00444 Ribosomal protein L36 BOQ57_09630 PF01197 Ribosomal protein L31 BOQ57_09645 PF01863 Protein of unknown function DUF45 BOQ57_09660 PF03606 C4-dicarboxylate anaerobic carrier BOQ57_09670 PF01266 FAD dependent oxidoreductase BOQ57_09670 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BOQ57_09675 PF02801 Beta-ketoacyl synthase, C-terminal domain BOQ57_09675 PF00109 Beta-ketoacyl synthase, N-terminal domain BOQ57_09690 PF00285 Citrate synthase, C-terminal domain BOQ57_09695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BOQ57_09700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BOQ57_09705 PF02910 Fumarate reductase flavoprotein C-term BOQ57_09705 PF00890 FAD binding domain BOQ57_09710 PF13085 2Fe-2S iron-sulfur cluster binding domain BOQ57_09715 PF16078 2-oxoglutarate dehydrogenase N-terminus BOQ57_09715 PF00676 Dehydrogenase E1 component BOQ57_09715 PF16870 2-oxoglutarate dehydrogenase C-terminal BOQ57_09715 PF02779 Transketolase, pyrimidine binding domain BOQ57_09720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BOQ57_09720 PF02817 e3 binding domain BOQ57_09720 PF00364 Biotin-requiring enzyme BOQ57_09725 PF08442 ATP-grasp domain BOQ57_09725 PF00549 CoA-ligase BOQ57_09730 PF00549 CoA-ligase BOQ57_09730 PF02629 CoA binding domain BOQ57_09740 PF03692 Putative zinc- or iron-chelating domain BOQ57_09745 PF01266 FAD dependent oxidoreductase BOQ57_09750 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_09755 PF00005 ABC transporter BOQ57_09765 PF00392 Bacterial regulatory proteins, gntR family BOQ57_09765 PF07702 UTRA domain BOQ57_09770 PF00266 Aminotransferase class-V BOQ57_09785 PF01228 Glycine radical BOQ57_09785 PF02901 Pyruvate formate lyase-like BOQ57_09790 PF01226 Formate/nitrite transporter BOQ57_09795 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding BOQ57_09795 PF18381 YcaO cyclodehydratase C-terminal domain BOQ57_09800 PF00893 Small Multidrug Resistance protein BOQ57_09805 PF02774 Semialdehyde dehydrogenase, dimerisation domain BOQ57_09805 PF01118 Semialdehyde dehydrogenase, NAD binding domain BOQ57_09810 PF05193 Peptidase M16 inactive domain BOQ57_09810 PF00675 Insulinase (Peptidase family M16) BOQ57_09815 PF01053 Cys/Met metabolism PLP-dependent enzyme BOQ57_09825 PF13460 NAD(P)H-binding BOQ57_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_09830 PF03466 LysR substrate binding domain BOQ57_09835 PF00106 short chain dehydrogenase BOQ57_09840 PF12833 Helix-turn-helix domain BOQ57_09845 PF07715 TonB-dependent Receptor Plug Domain BOQ57_09845 PF00593 TonB dependent receptor BOQ57_09855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_09855 PF03466 LysR substrate binding domain BOQ57_09860 PF08267 Cobalamin-independent synthase, N-terminal domain BOQ57_09860 PF01717 Cobalamin-independent synthase, Catalytic domain BOQ57_09870 PF00571 CBS domain BOQ57_09870 PF00478 IMP dehydrogenase / GMP reductase domain BOQ57_09875 PF07969 Amidohydrolase family BOQ57_09885 PF01266 FAD dependent oxidoreductase BOQ57_09890 PF04244 Deoxyribodipyrimidine photo-lyase-related protein BOQ57_09905 PF00768 D-alanyl-D-alanine carboxypeptidase BOQ57_09910 PF00293 NUDIX domain BOQ57_09915 PF03918 Cytochrome C biogenesis protein BOQ57_09920 PF08534 Redoxin BOQ57_09925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BOQ57_09925 PF01578 Cytochrome C assembly protein BOQ57_09930 PF03916 Polysulphide reductase, NrfD BOQ57_09935 PF00037 4Fe-4S binding domain BOQ57_09935 PF13247 4Fe-4S dicluster domain BOQ57_09940 PF13435 Cytochrome c554 and c-prime BOQ57_09940 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BOQ57_09945 PF02335 Cytochrome c552 BOQ57_09955 PF02754 Cysteine-rich domain BOQ57_09955 PF13183 4Fe-4S dicluster domain BOQ57_09960 PF00890 FAD binding domain BOQ57_09965 PF01266 FAD dependent oxidoreductase BOQ57_09965 PF04324 BFD-like [2Fe-2S] binding domain BOQ57_09970 PF02810 SEC-C motif BOQ57_09975 PF17200 Single Cache domain 2 BOQ57_09975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_09975 PF00672 HAMP domain BOQ57_09980 PF01047 MarR family BOQ57_09980 PF00480 ROK family BOQ57_09985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_09985 PF17203 Single cache domain 3 BOQ57_09985 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain BOQ57_09985 PF00989 PAS fold BOQ57_09990 PF08279 HTH domain BOQ57_09990 PF12431 Transcriptional regulator BOQ57_09990 PF00072 Response regulator receiver domain BOQ57_09995 PF01970 Tripartite tricarboxylate transporter TctA family BOQ57_10015 PF06826 Predicted Permease Membrane Region BOQ57_10015 PF02080 TrkA-C domain BOQ57_10030 PF12344 Ultra-violet resistance protein B BOQ57_10030 PF00271 Helicase conserved C-terminal domain BOQ57_10030 PF02151 UvrB/uvrC motif BOQ57_10030 PF17757 UvrB interaction domain BOQ57_10030 PF04851 Type III restriction enzyme, res subunit BOQ57_10040 PF09335 SNARE associated Golgi protein BOQ57_10045 PF02600 Disulfide bond formation protein DsbB BOQ57_10050 PF06450 Bacterial Na+/H+ antiporter B (NhaB) BOQ57_10055 PF07840 FadR C-terminal domain BOQ57_10055 PF00392 Bacterial regulatory proteins, gntR family BOQ57_10060 PF04293 SpoVR like protein BOQ57_10065 PF04285 Protein of unknown function (DUF444) BOQ57_10070 PF06798 PrkA serine protein kinase C-terminal domain BOQ57_10070 PF08298 PrkA AAA domain BOQ57_10075 PF16124 RecQ zinc-binding BOQ57_10075 PF09382 RQC domain BOQ57_10075 PF00271 Helicase conserved C-terminal domain BOQ57_10075 PF00270 DEAD/DEAH box helicase BOQ57_10075 PF00570 HRDC domain BOQ57_10080 PF00375 Sodium:dicarboxylate symporter family BOQ57_10085 PF03222 Tryptophan/tyrosine permease family BOQ57_10090 PF00293 NUDIX domain BOQ57_10095 PF00425 chorismate binding enzyme BOQ57_10095 PF04715 Anthranilate synthase component I, N terminal region BOQ57_10120 PF00343 Carbohydrate phosphorylase BOQ57_10125 PF00939 Sodium:sulfate symporter transmembrane region BOQ57_10130 PF00085 Thioredoxin BOQ57_10135 PF00672 HAMP domain BOQ57_10135 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_10135 PF00072 Response regulator receiver domain BOQ57_10135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BOQ57_10135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_10135 PF01627 Hpt domain BOQ57_10140 PF00664 ABC transporter transmembrane region BOQ57_10140 PF00005 ABC transporter BOQ57_10145 PF00664 ABC transporter transmembrane region BOQ57_10145 PF00005 ABC transporter BOQ57_10160 PF01575 MaoC like domain BOQ57_10165 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BOQ57_10165 PF00561 alpha/beta hydrolase fold BOQ57_10185 PF08543 Phosphomethylpyrimidine kinase BOQ57_10190 PF03992 Antibiotic biosynthesis monooxygenase BOQ57_10195 PF00465 Iron-containing alcohol dehydrogenase BOQ57_10200 PF00583 Acetyltransferase (GNAT) family BOQ57_10210 PF01928 CYTH domain BOQ57_10220 PF02694 Uncharacterised BCR, YnfA/UPF0060 family BOQ57_10230 PF13673 Acetyltransferase (GNAT) domain BOQ57_10235 PF00270 DEAD/DEAH box helicase BOQ57_10235 PF00271 Helicase conserved C-terminal domain BOQ57_10240 PF00255 Glutathione peroxidase BOQ57_10250 PF01820 D-ala D-ala ligase N-terminus BOQ57_10250 PF07478 D-ala D-ala ligase C-terminus BOQ57_10255 PF18029 Glyoxalase-like domain BOQ57_10255 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_10265 PF01925 Sulfite exporter TauE/SafE BOQ57_10270 PF03466 LysR substrate binding domain BOQ57_10270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_10280 PF12833 Helix-turn-helix domain BOQ57_10280 PF14525 AraC-binding-like domain BOQ57_10285 PF11398 Protein of unknown function (DUF2813) BOQ57_10295 PF00128 Alpha amylase, catalytic domain BOQ57_10295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BOQ57_10335 PF00883 Cytosol aminopeptidase family, catalytic domain BOQ57_10335 PF02789 Cytosol aminopeptidase family, N-terminal domain BOQ57_10340 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_10345 PF07687 Peptidase dimerisation domain BOQ57_10345 PF01546 Peptidase family M20/M25/M40 BOQ57_10350 PF00365 Phosphofructokinase BOQ57_10355 PF00121 Triosephosphate isomerase BOQ57_10360 PF02698 DUF218 domain BOQ57_10370 PF03882 MukF winged-helix domain BOQ57_10370 PF17193 MukF C-terminal domain BOQ57_10370 PF17192 MukF middle domain BOQ57_10375 PF04288 MukE-like family BOQ57_10380 PF04310 MukB N-terminal BOQ57_10380 PF16330 MukB hinge domain BOQ57_10385 PF03330 Lytic transglycolase BOQ57_10385 PF05036 Sporulation related domain BOQ57_10400 PF01327 Polypeptide deformylase BOQ57_10430 PF02567 Phenazine biosynthesis-like protein BOQ57_10440 PF03831 PhnA domain BOQ57_10440 PF08274 PhnA Zinc-Ribbon BOQ57_10465 PF00300 Histidine phosphatase superfamily (branch 1) BOQ57_10470 PF08448 PAS fold BOQ57_10470 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_10480 PF01713 Smr domain BOQ57_10485 PF05175 Methyltransferase small domain BOQ57_10490 PF01264 Chorismate synthase BOQ57_10500 PF00271 Helicase conserved C-terminal domain BOQ57_10500 PF00270 DEAD/DEAH box helicase BOQ57_10515 PF03222 Tryptophan/tyrosine permease family BOQ57_10520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_10520 PF00356 Bacterial regulatory proteins, lacI family BOQ57_10525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_10525 PF00381 PTS HPr component phosphorylation site BOQ57_10530 PF00294 pfkB family carbohydrate kinase BOQ57_10535 PF02378 Phosphotransferase system, EIIC BOQ57_10535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit BOQ57_10540 PF06560 Glucose-6-phosphate isomerase (GPI) BOQ57_10545 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family BOQ57_10545 PF00356 Bacterial regulatory proteins, lacI family BOQ57_10560 PF03830 PTS system sorbose subfamily IIB component BOQ57_10560 PF03610 PTS system fructose IIA component BOQ57_10565 PF03609 PTS system sorbose-specific iic component BOQ57_10570 PF03613 PTS system mannose/fructose/sorbose family IID component BOQ57_10580 PF06945 Protein of unknown function (DUF1289) BOQ57_10585 PF03562 MltA specific insert domain BOQ57_10585 PF06725 3D domain BOQ57_10590 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_10595 PF00268 Ribonucleotide reductase, small chain BOQ57_10600 PF02867 Ribonucleotide reductase, barrel domain BOQ57_10600 PF03477 ATP cone domain BOQ57_10600 PF00317 Ribonucleotide reductase, all-alpha domain BOQ57_10605 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_10615 PF03989 DNA gyrase C-terminal domain, beta-propeller BOQ57_10615 PF00521 DNA gyrase/topoisomerase IV, subunit A BOQ57_10620 PF04055 Radical SAM superfamily BOQ57_10630 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BOQ57_10630 PF02824 TGS domain BOQ57_10630 PF03129 Anticodon binding domain BOQ57_10630 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BOQ57_10635 PF05198 Translation initiation factor IF-3, N-terminal domain BOQ57_10635 PF00707 Translation initiation factor IF-3, C-terminal domain BOQ57_10640 PF01632 Ribosomal protein L35 BOQ57_10645 PF00453 Ribosomal protein L20 BOQ57_10650 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BOQ57_10650 PF01409 tRNA synthetases class II core domain (F) BOQ57_10655 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BOQ57_10655 PF01588 Putative tRNA binding domain BOQ57_10655 PF03484 tRNA synthetase B5 domain BOQ57_10655 PF03483 B3/4 domain BOQ57_10655 PF03147 Ferredoxin-fold anticodon binding domain BOQ57_10660 PF00216 Bacterial DNA-binding protein BOQ57_10665 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_10665 PF00072 Response regulator receiver domain BOQ57_10665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_10665 PF09456 RcsC Alpha-Beta-Loop (ABL) BOQ57_10680 PF02146 Sir2 family BOQ57_10690 PF00563 EAL domain BOQ57_10690 PF03707 Bacterial signalling protein N terminal repeat BOQ57_10690 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_10695 PF00356 Bacterial regulatory proteins, lacI family BOQ57_10700 PF00294 pfkB family carbohydrate kinase BOQ57_10705 PF13407 Periplasmic binding protein domain BOQ57_10710 PF02653 Branched-chain amino acid transport system / permease component BOQ57_10715 PF00005 ABC transporter BOQ57_10720 PF05025 RbsD / FucU transport protein family BOQ57_10725 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_10725 PF00043 Glutathione S-transferase, C-terminal domain BOQ57_10740 PF01171 PP-loop family BOQ57_10745 PF00582 Universal stress protein family BOQ57_10750 PF00027 Cyclic nucleotide-binding domain BOQ57_10750 PF13545 Crp-like helix-turn-helix domain BOQ57_10765 PF00403 Heavy-metal-associated domain BOQ57_10775 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BOQ57_10775 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BOQ57_10790 PF00115 Cytochrome C and Quinol oxidase polypeptide I BOQ57_10800 PF13185 GAF domain BOQ57_10805 PF17516 ProQ C-terminal domain BOQ57_10805 PF04352 ProQ/FINO family BOQ57_10810 PF17804 Tail specific protease N-terminal domain BOQ57_10810 PF03572 Peptidase family S41 BOQ57_10810 PF00595 PDZ domain BOQ57_10810 PF11818 C-terminal domain of tail specific protease (DUF3340) BOQ57_10815 PF01433 Peptidase family M1 domain BOQ57_10815 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BOQ57_10815 PF11940 Domain of unknown function (DUF3458) Ig-like fold BOQ57_10825 PF05088 Bacterial NAD-glutamate dehydrogenase BOQ57_10830 PF01180 Dihydroorotate dehydrogenase BOQ57_10835 PF07126 Cell-division protein ZapC BOQ57_10840 PF02926 THUMP domain BOQ57_10840 PF01170 Putative RNA methylase family UPF0020 BOQ57_10840 PF10672 S-adenosylmethionine-dependent methyltransferase BOQ57_10850 PF00005 ABC transporter BOQ57_10850 PF16326 ABC transporter C-terminal domain BOQ57_10850 PF12848 ABC transporter BOQ57_10860 PF04957 Ribosome modulation factor BOQ57_10865 PF07977 FabA-like domain BOQ57_10870 PF05362 Lon protease (S16) C-terminal proteolytic domain BOQ57_10870 PF13654 AAA domain BOQ57_10930 PF07130 YebG protein BOQ57_10940 PF00106 short chain dehydrogenase BOQ57_10965 PF06974 Protein of unknown function (DUF1298) BOQ57_10965 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain BOQ57_10980 PF03972 MmgE/PrpD family BOQ57_10985 PF00285 Citrate synthase, C-terminal domain BOQ57_11000 PF04403 Paraquat-inducible protein A BOQ57_11005 PF02470 MlaD protein BOQ57_11010 PF01189 16S rRNA methyltransferase RsmB/F BOQ57_11010 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF BOQ57_11010 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF BOQ57_11020 PF00589 Phage integrase family BOQ57_11025 PF01026 TatD related DNase BOQ57_11030 PF09115 DNA polymerase III, delta subunit, C terminal BOQ57_11035 PF02223 Thymidylate kinase BOQ57_11040 PF02618 YceG-like family BOQ57_11045 PF01063 Amino-transferase class IV BOQ57_11050 PF02801 Beta-ketoacyl synthase, C-terminal domain BOQ57_11050 PF00109 Beta-ketoacyl synthase, N-terminal domain BOQ57_11055 PF00550 Phosphopantetheine attachment site BOQ57_11065 PF00698 Acyl transferase domain BOQ57_11070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BOQ57_11070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BOQ57_11075 PF02504 Fatty acid synthesis protein BOQ57_11080 PF01783 Ribosomal L32p protein family BOQ57_11085 PF02620 Large ribosomal RNA subunit accumulation protein YceD BOQ57_11095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_11095 PF03466 LysR substrate binding domain BOQ57_11100 PF07690 Major Facilitator Superfamily BOQ57_11105 PF02545 Maf-like protein BOQ57_11110 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_11115 PF00849 RNA pseudouridylate synthase BOQ57_11115 PF01479 S4 domain BOQ57_11120 PF12111 Polyribonucleotide phosphorylase C terminal BOQ57_11120 PF10150 Ribonuclease E/G family BOQ57_11120 PF00575 S1 RNA binding domain BOQ57_11135 PF00892 EamA-like transporter family BOQ57_11140 PF07690 Major Facilitator Superfamily BOQ57_11145 PF02909 Tetracyclin repressor-like, C-terminal domain BOQ57_11145 PF00440 Bacterial regulatory proteins, tetR family BOQ57_11155 PF13700 Domain of unknown function (DUF4158) BOQ57_11155 PF01526 Tn3 transposase DDE domain BOQ57_11160 PF00239 Resolvase, N terminal domain BOQ57_11160 PF02796 Helix-turn-helix domain of resolvase BOQ57_11165 PF00563 EAL domain BOQ57_11165 PF11809 Domain of unknown function (DUF3330) BOQ57_11175 PF13495 Phage integrase, N-terminal SAM-like domain BOQ57_11175 PF00589 Phage integrase family BOQ57_11180 PF13427 Domain of unknown function (DUF4111) BOQ57_11180 PF01909 Nucleotidyltransferase domain BOQ57_11185 PF00893 Small Multidrug Resistance protein BOQ57_11190 PF00809 Pterin binding enzyme BOQ57_11225 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_11250 PF13333 Integrase core domain BOQ57_11250 PF01527 Transposase BOQ57_11250 PF13276 HTH-like domain BOQ57_11250 PF00665 Integrase core domain BOQ57_11285 PF02522 Aminoglycoside 3-N-acetyltransferase BOQ57_11290 PF13610 DDE domain BOQ57_11300 PF00589 Phage integrase family BOQ57_11300 PF13495 Phage integrase, N-terminal SAM-like domain BOQ57_11305 PF00583 Acetyltransferase (GNAT) family BOQ57_11310 PF00186 Dihydrofolate reductase BOQ57_11320 PF01909 Nucleotidyltransferase domain BOQ57_11320 PF13427 Domain of unknown function (DUF4111) BOQ57_11325 PF00893 Small Multidrug Resistance protein BOQ57_11330 PF00809 Pterin binding enzyme BOQ57_11350 PF03551 Transcriptional regulator PadR-like family BOQ57_11360 PF13610 DDE domain BOQ57_11385 PF01636 Phosphotransferase enzyme family BOQ57_11395 PF13610 DDE domain BOQ57_11410 PF00589 Phage integrase family BOQ57_11410 PF02899 Phage integrase, N-terminal SAM-like domain BOQ57_11425 PF01636 Phosphotransferase enzyme family BOQ57_11435 PF13610 DDE domain BOQ57_11450 PF00563 EAL domain BOQ57_11450 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_11450 PF03707 Bacterial signalling protein N terminal repeat BOQ57_11450 PF13188 PAS domain BOQ57_11455 PF05052 MerE protein BOQ57_11460 PF13411 MerR HTH family regulatory protein BOQ57_11465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_11465 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_11465 PF00403 Heavy-metal-associated domain BOQ57_11470 PF03203 MerC mercury resistance protein BOQ57_11475 PF00403 Heavy-metal-associated domain BOQ57_11480 PF02411 MerT mercuric transport protein BOQ57_11485 PF00376 MerR family regulatory protein BOQ57_11485 PF09278 MerR, DNA binding BOQ57_11490 PF01384 Phosphate transporter family BOQ57_11495 PF00692 dUTPase BOQ57_11500 PF00485 Phosphoribulokinase / Uridine kinase family BOQ57_11505 PF10609 NUBPL iron-transfer P-loop NTPase BOQ57_11510 PF08264 Anticodon-binding domain of tRNA BOQ57_11510 PF09334 tRNA synthetases class I (M) BOQ57_11510 PF01588 Putative tRNA binding domain BOQ57_11515 PF00043 Glutathione S-transferase, C-terminal domain BOQ57_11515 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_11520 PF00708 Acylphosphatase BOQ57_11525 PF00672 HAMP domain BOQ57_11525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_11525 PF12729 Four helix bundle sensory module for signal transduction BOQ57_11530 PF17785 PUA-like domain BOQ57_11530 PF10672 S-adenosylmethionine-dependent methyltransferase BOQ57_11545 PF02769 AIR synthase related protein, C-terminal domain BOQ57_11545 PF00586 AIR synthase related protein, N-terminal domain BOQ57_11555 PF00753 Metallo-beta-lactamase superfamily BOQ57_11560 PF00072 Response regulator receiver domain BOQ57_11565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_11565 PF00072 Response regulator receiver domain BOQ57_11565 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_11565 PF01627 Hpt domain BOQ57_11565 PF00672 HAMP domain BOQ57_11565 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) BOQ57_11570 PF01386 Ribosomal L25p family BOQ57_11580 PF00270 DEAD/DEAH box helicase BOQ57_11580 PF11898 Domain of unknown function (DUF3418) BOQ57_11580 PF04408 Helicase associated domain (HA2) BOQ57_11580 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BOQ57_11580 PF00271 Helicase conserved C-terminal domain BOQ57_11590 PF00196 Bacterial regulatory proteins, luxR family BOQ57_11590 PF00072 Response regulator receiver domain BOQ57_11600 PF02575 YbaB/EbfC DNA-binding family BOQ57_11605 PF12169 DNA polymerase III subunits gamma and tau domain III BOQ57_11605 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BOQ57_11605 PF12170 DNA polymerase III tau subunit V interacting with alpha BOQ57_11610 PF00156 Phosphoribosyl transferase domain BOQ57_11615 PF04304 Protein of unknown function (DUF454) BOQ57_11620 PF01207 Dihydrouridine synthase (Dus) BOQ57_11630 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_11635 PF01612 3'-5' exonuclease BOQ57_11635 PF00570 HRDC domain BOQ57_11640 PF00501 AMP-binding enzyme BOQ57_11640 PF13193 AMP-binding enzyme C-terminal domain BOQ57_11645 PF08241 Methyltransferase domain BOQ57_11645 PF12697 Alpha/beta hydrolase family BOQ57_11655 PF00814 Glycoprotease family BOQ57_11660 PF04851 Type III restriction enzyme, res subunit BOQ57_11660 PF13307 Helicase C-terminal domain BOQ57_11670 PF01634 ATP phosphoribosyltransferase BOQ57_11670 PF08029 HisG, C-terminal domain BOQ57_11675 PF00815 Histidinol dehydrogenase BOQ57_11680 PF00155 Aminotransferase class I and II BOQ57_11685 PF00475 Imidazoleglycerol-phosphate dehydratase BOQ57_11685 PF08645 Polynucleotide kinase 3 phosphatase BOQ57_11690 PF00117 Glutamine amidotransferase class-I BOQ57_11695 PF00977 Histidine biosynthesis protein BOQ57_11700 PF00072 Response regulator receiver domain BOQ57_11710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_11710 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_11710 PF01627 Hpt domain BOQ57_11710 PF00072 Response regulator receiver domain BOQ57_11715 PF00977 Histidine biosynthesis protein BOQ57_11720 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BOQ57_11720 PF01502 Phosphoribosyl-AMP cyclohydrolase BOQ57_11725 PF13193 AMP-binding enzyme C-terminal domain BOQ57_11725 PF00501 AMP-binding enzyme BOQ57_11730 PF03606 C4-dicarboxylate anaerobic carrier BOQ57_11740 PF05433 Glycine zipper 2TM domain BOQ57_11750 PF01799 [2Fe-2S] binding domain BOQ57_11750 PF00111 2Fe-2S iron-sulfur cluster binding domain BOQ57_11755 PF00941 FAD binding domain in molybdopterin dehydrogenase BOQ57_11755 PF03450 CO dehydrogenase flavoprotein C-terminal domain BOQ57_11760 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BOQ57_11760 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BOQ57_11765 PF00860 Permease family BOQ57_11770 PF01979 Amidohydrolase family BOQ57_11775 PF00860 Permease family BOQ57_11780 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BOQ57_11780 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BOQ57_11780 PF01799 [2Fe-2S] binding domain BOQ57_11785 PF00941 FAD binding domain in molybdopterin dehydrogenase BOQ57_11790 PF01979 Amidohydrolase family BOQ57_11795 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_11795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BOQ57_11800 PF12804 MobA-like NTP transferase domain BOQ57_11810 PF13478 XdhC Rossmann domain BOQ57_11810 PF02625 XdhC and CoxI family BOQ57_11815 PF00892 EamA-like transporter family BOQ57_11820 PF00696 Amino acid kinase family BOQ57_11825 PF01979 Amidohydrolase family BOQ57_11830 PF01546 Peptidase family M20/M25/M40 BOQ57_11830 PF07687 Peptidase dimerisation domain BOQ57_11835 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_11840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BOQ57_11840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BOQ57_11855 PF07152 YaeQ protein BOQ57_11865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BOQ57_11865 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_11865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BOQ57_11870 PF02803 Thiolase, C-terminal domain BOQ57_11870 PF00108 Thiolase, N-terminal domain BOQ57_11875 PF17863 AAA lid domain BOQ57_11875 PF07726 ATPase family associated with various cellular activities (AAA) BOQ57_11880 PF01882 Protein of unknown function DUF58 BOQ57_11905 PF08281 Sigma-70, region 4 BOQ57_11905 PF04542 Sigma-70 region 2 BOQ57_11915 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BOQ57_11920 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) BOQ57_11925 PF00563 EAL domain BOQ57_11925 PF08668 HDOD domain BOQ57_11930 PF00108 Thiolase, N-terminal domain BOQ57_11930 PF02803 Thiolase, C-terminal domain BOQ57_11935 PF00376 MerR family regulatory protein BOQ57_11935 PF09278 MerR, DNA binding BOQ57_11940 PF00375 Sodium:dicarboxylate symporter family BOQ57_11945 PF06865 Pyrimidine/purine nucleoside phosphorylase BOQ57_11950 PF03313 Serine dehydratase alpha chain BOQ57_11950 PF03315 Serine dehydratase beta chain BOQ57_11960 PF03315 Serine dehydratase beta chain BOQ57_11960 PF03313 Serine dehydratase alpha chain BOQ57_11965 PF13406 Transglycosylase SLT domain BOQ57_11970 PF05166 YcgL domain BOQ57_11975 PF03775 Septum formation inhibitor MinC, C-terminal domain BOQ57_11975 PF05209 Septum formation inhibitor MinC, N-terminal domain BOQ57_11980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BOQ57_11985 PF03776 Septum formation topological specificity factor MinE BOQ57_11990 PF04269 Protein of unknown function, DUF440 BOQ57_11995 PF00912 Transglycosylase BOQ57_12000 PF04269 Protein of unknown function, DUF440 BOQ57_12010 PF17783 CvfB-like winged helix domain BOQ57_12010 PF13509 S1 domain BOQ57_12035 PF02525 Flavodoxin-like fold BOQ57_12040 PF00892 EamA-like transporter family BOQ57_12045 PF01370 NAD dependent epimerase/dehydratase family BOQ57_12045 PF02222 ATP-grasp domain BOQ57_12050 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_12060 PF00677 Lumazine binding domain BOQ57_12065 PF06786 Uncharacterised protein family (UPF0253) BOQ57_12070 PF01554 MatE BOQ57_12100 PF00136 DNA polymerase family B BOQ57_12100 PF03104 DNA polymerase family B, exonuclease domain BOQ57_12110 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_12110 PF17151 Periplasmic sensor domain BOQ57_12125 PF03279 Bacterial lipid A biosynthesis acyltransferase BOQ57_12130 PF03279 Bacterial lipid A biosynthesis acyltransferase BOQ57_12140 PF03466 LysR substrate binding domain BOQ57_12140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_12145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BOQ57_12145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BOQ57_12150 PF01261 Xylose isomerase-like TIM barrel BOQ57_12155 PF03466 LysR substrate binding domain BOQ57_12155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_12165 PF01966 HD domain BOQ57_12175 PF13188 PAS domain BOQ57_12175 PF03707 Bacterial signalling protein N terminal repeat BOQ57_12175 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_12175 PF00563 EAL domain BOQ57_12180 PF00232 Glycosyl hydrolase family 1 BOQ57_12185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_12185 PF03466 LysR substrate binding domain BOQ57_12190 PF00563 EAL domain BOQ57_12190 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_12190 PF03707 Bacterial signalling protein N terminal repeat BOQ57_12190 PF13188 PAS domain BOQ57_12200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_12200 PF03466 LysR substrate binding domain BOQ57_12225 PF00239 Resolvase, N terminal domain BOQ57_12225 PF02796 Helix-turn-helix domain of resolvase BOQ57_12235 PF04002 RadC-like JAB domain BOQ57_12255 PF02384 N-6 DNA Methylase BOQ57_12270 PF00589 Phage integrase family BOQ57_12270 PF14659 Phage integrase, N-terminal SAM-like domain BOQ57_12280 PF01925 Sulfite exporter TauE/SafE BOQ57_12285 PF13520 Amino acid permease BOQ57_12295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BOQ57_12295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BOQ57_12300 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_12305 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_12310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BOQ57_12310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BOQ57_12310 PF02770 Acyl-CoA dehydrogenase, middle domain BOQ57_12315 PF00171 Aldehyde dehydrogenase family BOQ57_12320 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BOQ57_12320 PF02770 Acyl-CoA dehydrogenase, middle domain BOQ57_12320 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BOQ57_12325 PF01039 Carboxyl transferase domain BOQ57_12330 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_12335 PF02785 Biotin carboxylase C-terminal domain BOQ57_12335 PF00289 Biotin carboxylase, N-terminal domain BOQ57_12335 PF00364 Biotin-requiring enzyme BOQ57_12335 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BOQ57_12340 PF00682 HMGL-like BOQ57_12345 PF00376 MerR family regulatory protein BOQ57_12345 PF09278 MerR, DNA binding BOQ57_12360 PF01184 GPR1/FUN34/yaaH family BOQ57_12365 PF06167 Glucose-regulated metallo-peptidase M90 BOQ57_12375 PF01235 Sodium:alanine symporter family BOQ57_12380 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_12395 PF04341 Protein of unknown function, DUF485 BOQ57_12400 PF00474 Sodium:solute symporter family BOQ57_12405 PF12848 ABC transporter BOQ57_12405 PF00005 ABC transporter BOQ57_12410 PF13145 PPIC-type PPIASE domain BOQ57_12415 PF00216 Bacterial DNA-binding protein BOQ57_12420 PF05362 Lon protease (S16) C-terminal proteolytic domain BOQ57_12420 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_12420 PF02190 ATP-dependent protease La (LON) substrate-binding domain BOQ57_12425 PF07724 AAA domain (Cdc48 subfamily) BOQ57_12425 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_12425 PF06689 ClpX C4-type zinc finger BOQ57_12430 PF00574 Clp protease BOQ57_12435 PF05697 Bacterial trigger factor protein (TF) BOQ57_12435 PF05698 Bacterial trigger factor protein (TF) C-terminus BOQ57_12435 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_12455 PF02687 FtsX-like permease family BOQ57_12455 PF12704 MacB-like periplasmic core domain BOQ57_12460 PF00005 ABC transporter BOQ57_12465 PF12704 MacB-like periplasmic core domain BOQ57_12465 PF02687 FtsX-like permease family BOQ57_12475 PF17757 UvrB interaction domain BOQ57_12475 PF03461 TRCF domain BOQ57_12475 PF00271 Helicase conserved C-terminal domain BOQ57_12475 PF00270 DEAD/DEAH box helicase BOQ57_12475 PF02559 CarD-like/TRCF domain BOQ57_12480 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BOQ57_12485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_12490 PF00892 EamA-like transporter family BOQ57_12500 PF00300 Histidine phosphatase superfamily (branch 1) BOQ57_12505 PF00675 Insulinase (Peptidase family M16) BOQ57_12505 PF05193 Peptidase M16 inactive domain BOQ57_12510 PF05724 Thiopurine S-methyltransferase (TPMT) BOQ57_12525 PF02805 Metal binding domain of Ada BOQ57_12525 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BOQ57_12525 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BOQ57_12525 PF12833 Helix-turn-helix domain BOQ57_12540 PF00117 Glutamine amidotransferase class-I BOQ57_12540 PF02540 NAD synthase BOQ57_12540 PF00958 GMP synthase C terminal domain BOQ57_12545 PF00478 IMP dehydrogenase / GMP reductase domain BOQ57_12545 PF00571 CBS domain BOQ57_12550 PF02705 K+ potassium transporter BOQ57_12560 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_12565 PF02472 Biopolymer transport protein ExbD/TolR BOQ57_12570 PF00892 EamA-like transporter family BOQ57_12575 PF13742 OB-fold nucleic acid binding domain BOQ57_12575 PF02601 Exonuclease VII, large subunit BOQ57_12580 PF04055 Radical SAM superfamily BOQ57_12585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_12585 PF00672 HAMP domain BOQ57_12590 PF00793 DAHP synthetase I family BOQ57_12595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BOQ57_12600 PF00266 Aminotransferase class-V BOQ57_12605 PF01012 Electron transfer flavoprotein domain BOQ57_12605 PF00766 Electron transfer flavoprotein FAD-binding domain BOQ57_12610 PF01012 Electron transfer flavoprotein domain BOQ57_12620 PF01544 CorA-like Mg2+ transporter protein BOQ57_12625 PF11143 Protein of unknown function (DUF2919) BOQ57_12640 PF00593 TonB dependent receptor BOQ57_12640 PF07715 TonB-dependent Receptor Plug Domain BOQ57_12645 PF01032 FecCD transport family BOQ57_12650 PF01032 FecCD transport family BOQ57_12655 PF00005 ABC transporter BOQ57_12660 PF01648 4'-phosphopantetheinyl transferase superfamily BOQ57_12660 PF17837 4'-phosphopantetheinyl transferase N-terminal domain BOQ57_12665 PF01497 Periplasmic binding protein BOQ57_12670 PF00501 AMP-binding enzyme BOQ57_12670 PF13193 AMP-binding enzyme C-terminal domain BOQ57_12670 PF00668 Condensation domain BOQ57_12670 PF00975 Thioesterase domain BOQ57_12670 PF00550 Phosphopantetheine attachment site BOQ57_12675 PF00668 Condensation domain BOQ57_12675 PF00550 Phosphopantetheine attachment site BOQ57_12675 PF13193 AMP-binding enzyme C-terminal domain BOQ57_12675 PF00501 AMP-binding enzyme BOQ57_12675 PF07993 Male sterility protein BOQ57_12685 PF00668 Condensation domain BOQ57_12685 PF00975 Thioesterase domain BOQ57_12685 PF00550 Phosphopantetheine attachment site BOQ57_12685 PF00501 AMP-binding enzyme BOQ57_12685 PF13193 AMP-binding enzyme C-terminal domain BOQ57_12690 PF00857 Isochorismatase family BOQ57_12690 PF00550 Phosphopantetheine attachment site BOQ57_12695 PF00501 AMP-binding enzyme BOQ57_12695 PF13193 AMP-binding enzyme C-terminal domain BOQ57_12700 PF00425 chorismate binding enzyme BOQ57_12705 PF07273 Protein of unknown function (DUF1439) BOQ57_12715 PF00483 Nucleotidyl transferase BOQ57_12720 PF00563 EAL domain BOQ57_12720 PF03707 Bacterial signalling protein N terminal repeat BOQ57_12720 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_12735 PF00294 pfkB family carbohydrate kinase BOQ57_12745 PF00762 Ferrochelatase BOQ57_12750 PF05191 Adenylate kinase, active site lid BOQ57_12760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_12760 PF00183 Hsp90 protein BOQ57_12765 PF02132 RecR protein BOQ57_12765 PF13662 Toprim domain BOQ57_12770 PF02634 FdhD/NarQ family BOQ57_12775 PF02954 Bacterial regulatory protein, Fis family BOQ57_12775 PF01590 GAF domain BOQ57_12775 PF00158 Sigma-54 interaction domain BOQ57_12790 PF12800 4Fe-4S binding domain BOQ57_12790 PF13247 4Fe-4S dicluster domain BOQ57_12800 PF02705 K+ potassium transporter BOQ57_12805 PF12798 4Fe-4S binding domain BOQ57_12805 PF00037 4Fe-4S binding domain BOQ57_12810 PF00361 Proton-conducting membrane transporter BOQ57_12815 PF00146 NADH dehydrogenase BOQ57_12820 PF00374 Nickel-dependent hydrogenase BOQ57_12820 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BOQ57_12820 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BOQ57_12825 PF12838 4Fe-4S dicluster domain BOQ57_12830 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BOQ57_12835 PF07450 Formate hydrogenlyase maturation protein HycH BOQ57_12840 PF01750 Hydrogenase maturation protease BOQ57_12845 PF03841 L-seryl-tRNA selenium transferase BOQ57_12845 PF12390 Selenocysteine synthase N terminal BOQ57_12850 PF00009 Elongation factor Tu GTP binding domain BOQ57_12850 PF09105 Elongation factor SelB, winged helix BOQ57_12850 PF09106 Elongation factor SelB, winged helix BOQ57_12850 PF09107 Elongation factor SelB, winged helix BOQ57_12850 PF03144 Elongation factor Tu domain 2 BOQ57_12855 PF07503 HypF finger BOQ57_12855 PF17788 HypF Kae1-like domain BOQ57_12855 PF01300 Telomere recombination BOQ57_12855 PF00708 Acylphosphatase BOQ57_12860 PF01455 HupF/HypC family BOQ57_12865 PF01924 Hydrogenase formation hypA family BOQ57_12870 PF00586 AIR synthase related protein, N-terminal domain BOQ57_12870 PF02769 AIR synthase related protein, C-terminal domain BOQ57_12875 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA BOQ57_12880 PF02492 CobW/HypB/UreG, nucleotide-binding domain BOQ57_12885 PF08402 TOBE domain BOQ57_12885 PF00005 ABC transporter BOQ57_12890 PF00005 ABC transporter BOQ57_12895 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_12895 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_12900 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_12905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_12910 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE BOQ57_12915 PF01750 Hydrogenase maturation protease BOQ57_12920 PF00374 Nickel-dependent hydrogenase BOQ57_12925 PF03916 Polysulphide reductase, NrfD BOQ57_12930 PF13247 4Fe-4S dicluster domain BOQ57_12935 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BOQ57_12935 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal BOQ57_12940 PF00072 Response regulator receiver domain BOQ57_12950 PF01584 CheW-like domain BOQ57_12950 PF09078 CheY binding BOQ57_12950 PF02895 Signal transducing histidine kinase, homodimeric domain BOQ57_12950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_12950 PF01627 Hpt domain BOQ57_12955 PF17202 Single cache domain 3 BOQ57_12955 PF00672 HAMP domain BOQ57_12955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_12960 PF01584 CheW-like domain BOQ57_12965 PF03705 CheR methyltransferase, all-alpha domain BOQ57_12965 PF01739 CheR methyltransferase, SAM binding domain BOQ57_12970 PF00072 Response regulator receiver domain BOQ57_12970 PF01339 CheB methylesterase BOQ57_12975 PF00563 EAL domain BOQ57_12975 PF03707 Bacterial signalling protein N terminal repeat BOQ57_12975 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_12980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_12980 PF12729 Four helix bundle sensory module for signal transduction BOQ57_12980 PF00672 HAMP domain BOQ57_12985 PF01168 Alanine racemase, N-terminal domain BOQ57_12985 PF00842 Alanine racemase, C-terminal domain BOQ57_13005 PF01740 STAS domain BOQ57_13005 PF00916 Sulfate permease family BOQ57_13020 PF03350 Uncharacterized protein family, UPF0114 BOQ57_13035 PF03239 Iron permease FTR1 family BOQ57_13040 PF01593 Flavin containing amine oxidoreductase BOQ57_13055 PF07690 Major Facilitator Superfamily BOQ57_13065 PF00005 ABC transporter BOQ57_13090 PF02913 FAD linked oxidases, C-terminal domain BOQ57_13090 PF01565 FAD binding domain BOQ57_13095 PF02589 LUD domain BOQ57_13100 PF02589 LUD domain BOQ57_13100 PF13183 4Fe-4S dicluster domain BOQ57_13100 PF11870 Domain of unknown function (DUF3390) BOQ57_13105 PF02754 Cysteine-rich domain BOQ57_13110 PF02652 L-lactate permease BOQ57_13115 PF03466 LysR substrate binding domain BOQ57_13115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_13125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_13130 PF00561 alpha/beta hydrolase fold BOQ57_13155 PF01625 Peptide methionine sulfoxide reductase BOQ57_13160 PF00583 Acetyltransferase (GNAT) family BOQ57_13160 PF00696 Amino acid kinase family BOQ57_13165 PF00696 Amino acid kinase family BOQ57_13165 PF01842 ACT domain BOQ57_13180 PF00884 Sulfatase BOQ57_13185 PF17676 LD-carboxypeptidase C-terminal domain BOQ57_13185 PF02016 LD-carboxypeptidase N-terminal domain BOQ57_13190 PF01734 Patatin-like phospholipase BOQ57_13195 PF17179 4Fe-4S dicluster domain BOQ57_13200 PF00175 Oxidoreductase NAD-binding domain BOQ57_13200 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B BOQ57_13205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BOQ57_13205 PF13187 4Fe-4S dicluster domain BOQ57_13205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BOQ57_13210 PF14824 Sirohaem biosynthesis protein central BOQ57_13210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BOQ57_13210 PF10414 Sirohaem synthase dimerisation region BOQ57_13220 PF01906 Putative heavy-metal-binding BOQ57_13240 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_13245 PF05728 Uncharacterised protein family (UPF0227) BOQ57_13250 PF00860 Permease family BOQ57_13255 PF01432 Peptidase family M3 BOQ57_13255 PF08439 Oligopeptidase F BOQ57_13260 PF08439 Oligopeptidase F BOQ57_13260 PF01432 Peptidase family M3 BOQ57_13265 PF05661 Protein of unknown function (DUF808) BOQ57_13275 PF02355 Protein export membrane protein BOQ57_13275 PF07549 SecD/SecF GG Motif BOQ57_13280 PF02355 Protein export membrane protein BOQ57_13280 PF07549 SecD/SecF GG Motif BOQ57_13280 PF13721 SecD export protein N-terminal TM region BOQ57_13315 PF01230 HIT domain BOQ57_13320 PF00672 HAMP domain BOQ57_13320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_13330 PF01979 Amidohydrolase family BOQ57_13345 PF00375 Sodium:dicarboxylate symporter family BOQ57_13355 PF01168 Alanine racemase, N-terminal domain BOQ57_13355 PF00842 Alanine racemase, C-terminal domain BOQ57_13360 PF03741 Integral membrane protein TerC family BOQ57_13365 PF00005 ABC transporter BOQ57_13365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_13370 PF00005 ABC transporter BOQ57_13370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_13375 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_13375 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_13380 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_13385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_13390 PF01914 MarC family integral membrane protein BOQ57_13400 PF00465 Iron-containing alcohol dehydrogenase BOQ57_13400 PF00171 Aldehyde dehydrogenase family BOQ57_13405 PF01966 HD domain BOQ57_13410 PF07694 5TMR of 5TMR-LYT BOQ57_13410 PF06580 Histidine kinase BOQ57_13415 PF00072 Response regulator receiver domain BOQ57_13415 PF04397 LytTr DNA-binding domain BOQ57_13420 PF02554 Carbon starvation protein CstA BOQ57_13425 PF11742 Protein of unknown function (DUF3302) BOQ57_13430 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_13430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_13435 PF04851 Type III restriction enzyme, res subunit BOQ57_13435 PF00271 Helicase conserved C-terminal domain BOQ57_13440 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BOQ57_13445 PF00462 Glutaredoxin BOQ57_13455 PF00155 Aminotransferase class I and II BOQ57_13460 PF03606 C4-dicarboxylate anaerobic carrier BOQ57_13465 PF07055 Enoyl reductase FAD binding domain BOQ57_13465 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BOQ57_13465 PF12241 Trans-2-enoyl-CoA reductase catalytic region BOQ57_13475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_13475 PF08447 PAS fold BOQ57_13475 PF13426 PAS domain BOQ57_13485 PF00892 EamA-like transporter family BOQ57_13490 PF02508 Rnf-Nqr subunit, membrane protein BOQ57_13495 PF04060 Putative Fe-S cluster BOQ57_13500 PF10531 SLBB domain BOQ57_13500 PF13375 RnfC Barrel sandwich hybrid domain BOQ57_13500 PF12838 4Fe-4S dicluster domain BOQ57_13500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BOQ57_13505 PF03116 NQR2, RnfD, RnfE family BOQ57_13510 PF04205 FMN-binding domain BOQ57_13515 PF02508 Rnf-Nqr subunit, membrane protein BOQ57_13520 PF10576 Iron-sulfur binding domain of endonuclease III BOQ57_13520 PF00633 Helix-hairpin-helix motif BOQ57_13520 PF00730 HhH-GPD superfamily base excision DNA repair protein BOQ57_13525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_13530 PF00691 OmpA family BOQ57_13530 PF18393 MotY N-terminal domain BOQ57_13535 PF12729 Four helix bundle sensory module for signal transduction BOQ57_13535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_13535 PF00672 HAMP domain BOQ57_13540 PF00929 Exonuclease BOQ57_13545 PF03553 Na+/H+ antiporter family BOQ57_13545 PF13726 Na+-H+ antiporter family BOQ57_13550 PF03880 DbpA RNA binding domain BOQ57_13550 PF00270 DEAD/DEAH box helicase BOQ57_13550 PF00271 Helicase conserved C-terminal domain BOQ57_13555 PF03061 Thioesterase superfamily BOQ57_13565 PF01565 FAD binding domain BOQ57_13565 PF02913 FAD linked oxidases, C-terminal domain BOQ57_13565 PF13183 4Fe-4S dicluster domain BOQ57_13575 PF03471 Transporter associated domain BOQ57_13575 PF03741 Integral membrane protein TerC family BOQ57_13580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BOQ57_13585 PF00962 Adenosine/AMP deaminase BOQ57_13590 PF13344 Haloacid dehalogenase-like hydrolase BOQ57_13595 PF02254 TrkA-N domain BOQ57_13595 PF00999 Sodium/hydrogen exchanger family BOQ57_13605 PF00733 Asparagine synthase BOQ57_13605 PF13537 Glutamine amidotransferase domain BOQ57_13615 PF13417 Glutathione S-transferase, N-terminal domain BOQ57_13615 PF00043 Glutathione S-transferase, C-terminal domain BOQ57_13620 PF14497 Glutathione S-transferase, C-terminal domain BOQ57_13620 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_13630 PF04209 homogentisate 1,2-dioxygenase BOQ57_13635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_13645 PF00849 RNA pseudouridylate synthase BOQ57_13650 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_13650 PF00563 EAL domain BOQ57_13650 PF13426 PAS domain BOQ57_13655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_13655 PF08447 PAS fold BOQ57_13665 PF09924 Uncharacterised conserved protein (DUF2156) BOQ57_13665 PF03706 Lysylphosphatidylglycerol synthase TM region BOQ57_13675 PF08019 Phosphoethanolamine transferase EptA/EptB BOQ57_13675 PF00884 Sulfatase BOQ57_13695 PF01027 Inhibitor of apoptosis-promoting Bax1 BOQ57_13700 PF12805 FUSC-like inner membrane protein yccS BOQ57_13705 PF04358 DsrC like protein BOQ57_13710 PF05036 Sporulation related domain BOQ57_13715 PF08245 Mur ligase middle domain BOQ57_13715 PF02875 Mur ligase family, glutamate ligase domain BOQ57_13720 PF01039 Carboxyl transferase domain BOQ57_13720 PF17848 Acetyl-coA carboxylase zinc finger domain BOQ57_13725 PF01416 tRNA pseudouridine synthase BOQ57_13735 PF01118 Semialdehyde dehydrogenase, NAD binding domain BOQ57_13735 PF02774 Semialdehyde dehydrogenase, dimerisation domain BOQ57_13740 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BOQ57_13740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_13740 PF11890 Domain of unknown function (DUF3410) BOQ57_13745 PF01569 PAP2 superfamily BOQ57_13750 PF03180 NLPA lipoprotein BOQ57_13770 PF01483 Proprotein convertase P-domain BOQ57_13770 PF00082 Subtilase family BOQ57_13780 PF14310 Fibronectin type III-like domain BOQ57_13780 PF01915 Glycosyl hydrolase family 3 C-terminal domain BOQ57_13780 PF00933 Glycosyl hydrolase family 3 N terminal domain BOQ57_13790 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BOQ57_13790 PF02896 PEP-utilising enzyme, TIM barrel domain BOQ57_13790 PF00391 PEP-utilising enzyme, mobile domain BOQ57_13795 PF03618 Kinase/pyrophosphorylase BOQ57_13805 PF00324 Amino acid permease BOQ57_13885 PF03412 Peptidase C39 family BOQ57_13885 PF00005 ABC transporter BOQ57_13885 PF00664 ABC transporter transmembrane region BOQ57_13890 PF04055 Radical SAM superfamily BOQ57_13890 PF16199 Radical_SAM C-terminal domain BOQ57_13900 PF04898 Glutamate synthase central domain BOQ57_13900 PF00310 Glutamine amidotransferases class-II BOQ57_13900 PF01493 GXGXG motif BOQ57_13900 PF01645 Conserved region in glutamate synthase BOQ57_13905 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BOQ57_13905 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_13910 PF00005 ABC transporter BOQ57_13915 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_13920 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_13935 PF09278 MerR, DNA binding BOQ57_13935 PF00376 MerR family regulatory protein BOQ57_13950 PF14521 Lysine-specific metallo-endopeptidase BOQ57_13960 PF00270 DEAD/DEAH box helicase BOQ57_13960 PF00271 Helicase conserved C-terminal domain BOQ57_13965 PF13302 Acetyltransferase (GNAT) domain BOQ57_13990 PF07759 Protein of unknown function (DUF1615) BOQ57_13995 PF08502 LeuA allosteric (dimerisation) domain BOQ57_13995 PF00682 HMGL-like BOQ57_14000 PF02142 MGS-like domain BOQ57_14000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BOQ57_14000 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BOQ57_14005 PF00117 Glutamine amidotransferase class-I BOQ57_14005 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BOQ57_14010 PF05173 Dihydrodipicolinate reductase, C-terminus BOQ57_14010 PF01113 Dihydrodipicolinate reductase, N-terminus BOQ57_14020 PF01812 5-formyltetrahydrofolate cyclo-ligase family BOQ57_14025 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BOQ57_14030 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_14030 PF01842 ACT domain BOQ57_14030 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BOQ57_14035 PF01219 Prokaryotic diacylglycerol kinase BOQ57_14040 PF00793 DAHP synthetase I family BOQ57_14045 PF00583 Acetyltransferase (GNAT) family BOQ57_14050 PF00005 ABC transporter BOQ57_14055 PF01032 FecCD transport family BOQ57_14060 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_14060 PF00072 Response regulator receiver domain BOQ57_14060 PF00989 PAS fold BOQ57_14060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_14060 PF01627 Hpt domain BOQ57_14060 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_14070 PF00437 Type II/IV secretion system protein BOQ57_14075 PF00483 Nucleotidyl transferase BOQ57_14090 PF07664 Ferrous iron transport protein B C terminus BOQ57_14090 PF07670 Nucleoside recognition BOQ57_14090 PF02421 Ferrous iron transport protein B BOQ57_14100 PF01253 Translation initiation factor SUI1 BOQ57_14105 PF01169 Uncharacterized protein family UPF0016 BOQ57_14135 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_14135 PF13185 GAF domain BOQ57_14155 PF01406 tRNA synthetases class I (C) catalytic domain BOQ57_14155 PF09190 DALR domain BOQ57_14160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BOQ57_14170 PF00149 Calcineurin-like phosphoesterase BOQ57_14175 PF03916 Polysulphide reductase, NrfD BOQ57_14180 PF00037 4Fe-4S binding domain BOQ57_14180 PF13247 4Fe-4S dicluster domain BOQ57_14200 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) BOQ57_14205 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB BOQ57_14210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_14210 PF00672 HAMP domain BOQ57_14215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_14215 PF13426 PAS domain BOQ57_14215 PF08447 PAS fold BOQ57_14235 PF01066 CDP-alcohol phosphatidyltransferase BOQ57_14240 PF08459 UvrC Helix-hairpin-helix N-terminal BOQ57_14240 PF02151 UvrB/uvrC motif BOQ57_14240 PF01541 GIY-YIG catalytic domain BOQ57_14245 PF00072 Response regulator receiver domain BOQ57_14245 PF00196 Bacterial regulatory proteins, luxR family BOQ57_14250 PF02348 Cytidylyltransferase BOQ57_14255 PF03966 Trm112p-like protein BOQ57_14260 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BOQ57_14265 PF00664 ABC transporter transmembrane region BOQ57_14265 PF00005 ABC transporter BOQ57_14270 PF03772 Competence protein BOQ57_14270 PF00753 Metallo-beta-lactamase superfamily BOQ57_14285 PF05872 Bacterial protein of unknown function (DUF853) BOQ57_14290 PF00155 Aminotransferase class I and II BOQ57_14300 PF13609 Gram-negative porin BOQ57_14305 PF06733 DEAD_2 BOQ57_14305 PF13307 Helicase C-terminal domain BOQ57_14315 PF00850 Histone deacetylase domain BOQ57_14320 PF07690 Major Facilitator Superfamily BOQ57_14325 PF01926 50S ribosome-binding GTPase BOQ57_14330 PF00245 Alkaline phosphatase BOQ57_14335 PF00245 Alkaline phosphatase BOQ57_14350 PF01272 Transcription elongation factor, GreA/GreB, C-term BOQ57_14350 PF14760 Rnk N-terminus BOQ57_14355 PF00072 Response regulator receiver domain BOQ57_14355 PF00196 Bacterial regulatory proteins, luxR family BOQ57_14360 PF05231 MASE1 BOQ57_14360 PF07730 Histidine kinase BOQ57_14360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_14365 PF07690 Major Facilitator Superfamily BOQ57_14370 PF08448 PAS fold BOQ57_14370 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_14375 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_14380 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_14385 PF00005 ABC transporter BOQ57_14395 PF04116 Fatty acid hydroxylase superfamily BOQ57_14400 PF13520 Amino acid permease BOQ57_14405 PF02310 B12 binding domain BOQ57_14405 PF02607 B12 binding domain BOQ57_14405 PF02965 Vitamin B12 dependent methionine synthase, activation domain BOQ57_14405 PF02574 Homocysteine S-methyltransferase BOQ57_14405 PF00809 Pterin binding enzyme BOQ57_14415 PF03471 Transporter associated domain BOQ57_14415 PF00571 CBS domain BOQ57_14415 PF01595 Cyclin M transmembrane N-terminal domain BOQ57_14420 PF01895 PhoU domain BOQ57_14430 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_14435 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_14440 PF14437 MafB19-like deaminase BOQ57_14450 PF01274 Malate synthase BOQ57_14455 PF00463 Isocitrate lyase family BOQ57_14460 PF00308 Bacterial dnaA protein BOQ57_14475 PF02769 AIR synthase related protein, C-terminal domain BOQ57_14475 PF00586 AIR synthase related protein, N-terminal domain BOQ57_14480 PF00551 Formyl transferase BOQ57_14485 PF01784 NIF3 (NGG1p interacting factor 3) BOQ57_14490 PF02954 Bacterial regulatory protein, Fis family BOQ57_14490 PF00158 Sigma-54 interaction domain BOQ57_14495 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_14495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_14495 PF00989 PAS fold BOQ57_14500 PF02954 Bacterial regulatory protein, Fis family BOQ57_14500 PF00072 Response regulator receiver domain BOQ57_14500 PF00158 Sigma-54 interaction domain BOQ57_14510 PF01842 ACT domain BOQ57_14515 PF13090 Polyphosphate kinase C-terminal domain 2 BOQ57_14515 PF13089 Polyphosphate kinase N-terminal domain BOQ57_14515 PF17941 Polyphosphate kinase C-terminal domain 1 BOQ57_14515 PF02503 Polyphosphate kinase middle domain BOQ57_14520 PF02541 Ppx/GppA phosphatase family BOQ57_14525 PF01769 Divalent cation transporter BOQ57_14525 PF03448 MgtE intracellular N domain BOQ57_14525 PF00571 CBS domain BOQ57_14530 PF00669 Bacterial flagellin N-terminal helical region BOQ57_14535 PF00460 Flagella basal body rod protein BOQ57_14535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BOQ57_14540 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BOQ57_14540 PF10135 Rod binding protein BOQ57_14545 PF02119 Flagellar P-ring protein BOQ57_14550 PF02107 Flagellar L-ring protein BOQ57_14555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BOQ57_14555 PF00460 Flagella basal body rod protein BOQ57_14560 PF00460 Flagella basal body rod protein BOQ57_14560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BOQ57_14565 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BOQ57_14565 PF07559 Flagellar basal body protein FlaE BOQ57_14565 PF00460 Flagella basal body rod protein BOQ57_14575 PF00460 Flagella basal body rod protein BOQ57_14575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BOQ57_14580 PF00460 Flagella basal body rod protein BOQ57_14585 PF01739 CheR methyltransferase, SAM binding domain BOQ57_14585 PF03705 CheR methyltransferase, all-alpha domain BOQ57_14590 PF01584 CheW-like domain BOQ57_14590 PF00072 Response regulator receiver domain BOQ57_14595 PF13144 Chaperone for flagella basal body P-ring formation BOQ57_14610 PF12850 Calcineurin-like phosphoesterase superfamily domain BOQ57_14615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_14625 PF00849 RNA pseudouridylate synthase BOQ57_14625 PF01479 S4 domain BOQ57_14630 PF01966 HD domain BOQ57_14630 PF11871 Domain of unknown function (DUF3391) BOQ57_14640 PF00923 Transaldolase/Fructose-6-phosphate aldolase BOQ57_14645 PF04055 Radical SAM superfamily BOQ57_14655 PF08220 DeoR-like helix-turn-helix domain BOQ57_14655 PF00455 DeoR C terminal sensor domain BOQ57_14660 PF00892 EamA-like transporter family BOQ57_14665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_14690 PF00313 'Cold-shock' DNA-binding domain BOQ57_14695 PF00364 Biotin-requiring enzyme BOQ57_14695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BOQ57_14695 PF02817 e3 binding domain BOQ57_14700 PF02779 Transketolase, pyrimidine binding domain BOQ57_14700 PF02780 Transketolase, C-terminal domain BOQ57_14705 PF00676 Dehydrogenase E1 component BOQ57_14710 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BOQ57_14720 PF05472 DNA replication terminus site-binding protein (Ter protein) BOQ57_14725 PF00271 Helicase conserved C-terminal domain BOQ57_14725 PF00176 SNF2 family N-terminal domain BOQ57_14725 PF04434 SWIM zinc finger BOQ57_14730 PF04337 Protein of unknown function, DUF480 BOQ57_14745 PF06082 Exopolysaccharide biosynthesis protein YbjH BOQ57_14765 PF13614 AAA domain BOQ57_14765 PF13807 G-rich domain on putative tyrosine kinase BOQ57_14765 PF02706 Chain length determinant protein BOQ57_14775 PF02706 Chain length determinant protein BOQ57_14780 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BOQ57_14785 PF04321 RmlD substrate binding domain BOQ57_14790 PF16363 GDP-mannose 4,6 dehydratase BOQ57_14795 PF02719 Polysaccharide biosynthesis protein BOQ57_14800 PF02397 Bacterial sugar transferase BOQ57_14805 PF01370 NAD dependent epimerase/dehydratase family BOQ57_14815 PF02350 UDP-N-acetylglucosamine 2-epimerase BOQ57_14820 PF01370 NAD dependent epimerase/dehydratase family BOQ57_14825 PF08485 Polysaccharide biosynthesis protein C-terminal BOQ57_14825 PF02719 Polysaccharide biosynthesis protein BOQ57_14830 PF00977 Histidine biosynthesis protein BOQ57_14835 PF00117 Glutamine amidotransferase class-I BOQ57_14855 PF00665 Integrase core domain BOQ57_14860 PF00665 Integrase core domain BOQ57_14860 PF13936 Helix-turn-helix domain BOQ57_14865 PF01527 Transposase BOQ57_14880 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BOQ57_14885 PF00106 short chain dehydrogenase BOQ57_14895 PF05523 WxcM-like, C-terminal BOQ57_14900 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BOQ57_14905 PF00483 Nucleotidyl transferase BOQ57_14910 PF04321 RmlD substrate binding domain BOQ57_14915 PF16363 GDP-mannose 4,6 dehydratase BOQ57_14920 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BOQ57_14920 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BOQ57_14920 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BOQ57_14925 PF02350 UDP-N-acetylglucosamine 2-epimerase BOQ57_14930 PF16363 GDP-mannose 4,6 dehydratase BOQ57_14935 PF02321 Outer membrane efflux protein BOQ57_14940 PF00873 AcrB/AcrD/AcrF family BOQ57_14945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_14945 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_14950 PF00440 Bacterial regulatory proteins, tetR family BOQ57_14950 PF08361 MAATS-type transcriptional repressor, C-terminal region BOQ57_14970 PF01479 S4 domain BOQ57_14970 PF00849 RNA pseudouridylate synthase BOQ57_14975 PF04079 Segregation and condensation complex subunit ScpB BOQ57_14980 PF02616 Segregation and condensation protein ScpA BOQ57_14985 PF01300 Telomere recombination BOQ57_14990 PF02811 PHP domain BOQ57_14995 PF00425 chorismate binding enzyme BOQ57_14995 PF04715 Anthranilate synthase component I, N terminal region BOQ57_15000 PF00117 Glutamine amidotransferase class-I BOQ57_15000 PF02885 Glycosyl transferase family, helical bundle domain BOQ57_15000 PF00591 Glycosyl transferase family, a/b domain BOQ57_15005 PF00591 Glycosyl transferase family, a/b domain BOQ57_15005 PF02885 Glycosyl transferase family, helical bundle domain BOQ57_15010 PF00218 Indole-3-glycerol phosphate synthase BOQ57_15010 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BOQ57_15015 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_15020 PF00290 Tryptophan synthase alpha chain BOQ57_15025 PF04307 LexA-binding, inner membrane-associated putative hydrolase BOQ57_15045 PF01773 Na+ dependent nucleoside transporter N-terminus BOQ57_15045 PF07670 Nucleoside recognition BOQ57_15045 PF07662 Na+ dependent nucleoside transporter C-terminus BOQ57_15055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BOQ57_15060 PF00005 ABC transporter BOQ57_15065 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_15070 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BOQ57_15080 PF07690 Major Facilitator Superfamily BOQ57_15085 PF01040 UbiA prenyltransferase family BOQ57_15090 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BOQ57_15095 PF00510 Cytochrome c oxidase subunit III BOQ57_15100 PF00115 Cytochrome C and Quinol oxidase polypeptide I BOQ57_15105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BOQ57_15105 PF06481 COX Aromatic Rich Motif BOQ57_15115 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BOQ57_15115 PF00034 Cytochrome c BOQ57_15125 PF01156 Inosine-uridine preferring nucleoside hydrolase BOQ57_15140 PF00127 Copper binding proteins, plastocyanin/azurin family BOQ57_15145 PF02424 ApbE family BOQ57_15150 PF07690 Major Facilitator Superfamily BOQ57_15165 PF03372 Endonuclease/Exonuclease/phosphatase family BOQ57_15170 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_15175 PF00873 AcrB/AcrD/AcrF family BOQ57_15185 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_15185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_15190 PF00873 AcrB/AcrD/AcrF family BOQ57_15210 PF10437 Bacterial lipoate protein ligase C-terminus BOQ57_15210 PF03099 Biotin/lipoate A/B protein ligase family BOQ57_15215 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_15215 PF00563 EAL domain BOQ57_15215 PF03707 Bacterial signalling protein N terminal repeat BOQ57_15220 PF00873 AcrB/AcrD/AcrF family BOQ57_15235 PF04143 Sulphur transport BOQ57_15240 PF01022 Bacterial regulatory protein, arsR family BOQ57_15255 PF02308 MgtC family BOQ57_15260 PF00356 Bacterial regulatory proteins, lacI family BOQ57_15260 PF13407 Periplasmic binding protein domain BOQ57_15265 PF08244 Glycosyl hydrolases family 32 C terminal BOQ57_15265 PF00251 Glycosyl hydrolases family 32 N-terminal domain BOQ57_15270 PF00367 phosphotransferase system, EIIB BOQ57_15270 PF02378 Phosphotransferase system, EIIC BOQ57_15275 PF00294 pfkB family carbohydrate kinase BOQ57_15280 PF02264 LamB porin BOQ57_15280 PF11471 Maltoporin periplasmic N-terminal extension BOQ57_15285 PF00226 DnaJ domain BOQ57_15285 PF00684 DnaJ central domain BOQ57_15285 PF01556 DnaJ C terminal domain BOQ57_15290 PF00012 Hsp70 protein BOQ57_15295 PF01025 GrpE BOQ57_15300 PF01513 ATP-NAD kinase BOQ57_15305 PF02463 RecF/RecN/SMC N terminal domain BOQ57_15310 PF01368 DHH family BOQ57_15310 PF02833 DHHA2 domain BOQ57_15320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_15325 PF12704 MacB-like periplasmic core domain BOQ57_15325 PF00005 ABC transporter BOQ57_15325 PF02687 FtsX-like permease family BOQ57_15330 PF02321 Outer membrane efflux protein BOQ57_15335 PF04954 Siderophore-interacting protein BOQ57_15335 PF08021 Siderophore-interacting FAD-binding domain BOQ57_15345 PF00793 DAHP synthetase I family BOQ57_15350 PF00816 H-NS histone family BOQ57_15365 PF01266 FAD dependent oxidoreductase BOQ57_15370 PF07883 Cupin domain BOQ57_15370 PF01381 Helix-turn-helix BOQ57_15375 PF00171 Aldehyde dehydrogenase family BOQ57_15380 PF00202 Aminotransferase class-III BOQ57_15385 PF00324 Amino acid permease BOQ57_15395 PF13520 Amino acid permease BOQ57_15405 PF02690 Na+/Pi-cotransporter BOQ57_15410 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase BOQ57_15410 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BOQ57_15415 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BOQ57_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_15420 PF01627 Hpt domain BOQ57_15420 PF00989 PAS fold BOQ57_15420 PF00072 Response regulator receiver domain BOQ57_15420 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_15420 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_15435 PF01048 Phosphorylase superfamily BOQ57_15465 PF14821 Threonine synthase N terminus BOQ57_15465 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_15470 PF00288 GHMP kinases N terminal domain BOQ57_15470 PF08544 GHMP kinases C terminal BOQ57_15475 PF03447 Homoserine dehydrogenase, NAD binding domain BOQ57_15475 PF13840 ACT domain BOQ57_15475 PF01842 ACT domain BOQ57_15475 PF00696 Amino acid kinase family BOQ57_15475 PF00742 Homoserine dehydrogenase BOQ57_15480 PF00588 SpoU rRNA Methylase family BOQ57_15485 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BOQ57_15500 PF03737 Aldolase/RraA BOQ57_15510 PF00072 Response regulator receiver domain BOQ57_15510 PF00486 Transcriptional regulatory protein, C terminal BOQ57_15525 PF00005 ABC transporter BOQ57_15525 PF00664 ABC transporter transmembrane region BOQ57_15530 PF00664 ABC transporter transmembrane region BOQ57_15530 PF00005 ABC transporter BOQ57_15550 PF01980 tRNA-methyltransferase O BOQ57_15550 PF18389 TrmO C-terminal domain BOQ57_15555 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BOQ57_15555 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BOQ57_15565 PF07724 AAA domain (Cdc48 subfamily) BOQ57_15565 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_15565 PF17871 AAA lid domain BOQ57_15565 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_15565 PF02861 Clp amino terminal domain, pathogenicity island component BOQ57_15570 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_15575 PF00381 PTS HPr component phosphorylation site BOQ57_15580 PF02896 PEP-utilising enzyme, TIM barrel domain BOQ57_15580 PF00391 PEP-utilising enzyme, mobile domain BOQ57_15580 PF05524 PEP-utilising enzyme, N-terminal BOQ57_15585 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BOQ57_15590 PF00072 Response regulator receiver domain BOQ57_15590 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_15600 PF01292 Prokaryotic cytochrome b561 BOQ57_15610 PF12320 Type 5 capsule protein repressor C-terminal domain BOQ57_15610 PF00149 Calcineurin-like phosphoesterase BOQ57_15620 PF04381 Putative exonuclease, RdgC BOQ57_15630 PF00999 Sodium/hydrogen exchanger family BOQ57_15630 PF02254 TrkA-N domain BOQ57_15635 PF04151 Bacterial pre-peptidase C-terminal domain BOQ57_15635 PF04389 Peptidase family M28 BOQ57_15645 PF02887 Pyruvate kinase, alpha/beta domain BOQ57_15645 PF00224 Pyruvate kinase, barrel domain BOQ57_15650 PF00924 Mechanosensitive ion channel BOQ57_15650 PF12795 Mechanosensitive ion channel porin domain BOQ57_15650 PF12794 Mechanosensitive ion channel inner membrane domain 1 BOQ57_15660 PF10282 Lactonase, 7-bladed beta-propeller BOQ57_15665 PF00860 Permease family BOQ57_15675 PF05433 Glycine zipper 2TM domain BOQ57_15675 PF16998 17 kDa outer membrane surface antigen BOQ57_15680 PF03949 Malic enzyme, NAD binding domain BOQ57_15680 PF00390 Malic enzyme, N-terminal domain BOQ57_15685 PF00072 Response regulator receiver domain BOQ57_15695 PF13247 4Fe-4S dicluster domain BOQ57_15700 PF12838 4Fe-4S dicluster domain BOQ57_15700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_15700 PF00384 Molybdopterin oxidoreductase BOQ57_15700 PF01568 Molydopterin dinucleotide binding domain BOQ57_15700 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BOQ57_15700 PF12838 4Fe-4S dicluster domain BOQ57_15700 PF00384 Molybdopterin oxidoreductase BOQ57_15700 PF01568 Molydopterin dinucleotide binding domain BOQ57_15700 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BOQ57_15700 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_15740 PF02634 FdhD/NarQ family BOQ57_15745 PF12728 Helix-turn-helix domain BOQ57_15745 PF12727 PBP superfamily domain BOQ57_15750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_15750 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_15750 PF00989 PAS fold BOQ57_15755 PF00072 Response regulator receiver domain BOQ57_15755 PF02954 Bacterial regulatory protein, Fis family BOQ57_15755 PF00158 Sigma-54 interaction domain BOQ57_15760 PF12849 PBP superfamily domain BOQ57_15765 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_15770 PF00005 ABC transporter BOQ57_15775 PF12804 MobA-like NTP transferase domain BOQ57_15780 PF03453 MoeA N-terminal region (domain I and II) BOQ57_15780 PF03454 MoeA C-terminal region (domain IV) BOQ57_15780 PF00994 Probable molybdopterin binding domain BOQ57_15785 PF04632 Fusaric acid resistance protein family BOQ57_15795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_15795 PF08447 PAS fold BOQ57_15795 PF13426 PAS domain BOQ57_15815 PF05114 Protein of unknown function (DUF692) BOQ57_15825 PF10725 Protein of unknown function (DUF2517) BOQ57_15845 PF09308 LuxQ, periplasmic BOQ57_15845 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_15845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_15845 PF00072 Response regulator receiver domain BOQ57_15850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_15855 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_15860 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_15860 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_15865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_15865 PF00005 ABC transporter BOQ57_15870 PF00005 ABC transporter BOQ57_15870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_15880 PF01869 BadF/BadG/BcrA/BcrD ATPase family BOQ57_15885 PF00728 Glycosyl hydrolase family 20, catalytic domain BOQ57_15885 PF02838 Glycosyl hydrolase family 20, domain 2 BOQ57_15890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_15890 PF08447 PAS fold BOQ57_15900 PF01131 DNA topoisomerase BOQ57_15900 PF01751 Toprim domain BOQ57_15900 PF01396 Topoisomerase DNA binding C4 zinc finger BOQ57_15900 PF08272 Topoisomerase I zinc-ribbon-like BOQ57_15905 PF04996 Succinylarginine dihydrolase BOQ57_15910 PF08496 Peptidase family S49 N-terminal BOQ57_15910 PF01343 Peptidase family S49 BOQ57_15915 PF00106 short chain dehydrogenase BOQ57_15920 PF03466 LysR substrate binding domain BOQ57_15920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_15925 PF07690 Major Facilitator Superfamily BOQ57_15930 PF00155 Aminotransferase class I and II BOQ57_15940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_15940 PF03466 LysR substrate binding domain BOQ57_15950 PF01161 Phosphatidylethanolamine-binding protein BOQ57_15960 PF01204 Trehalase BOQ57_15965 PF00579 tRNA synthetases class I (W and Y) BOQ57_15970 PF08525 Opacity-associated protein A N-terminal motif BOQ57_15970 PF01476 LysM domain BOQ57_15970 PF01551 Peptidase family M23 BOQ57_15975 PF03702 Anhydro-N-acetylmuramic acid kinase BOQ57_15980 PF01965 DJ-1/PfpI family BOQ57_15985 PF01042 Endoribonuclease L-PSP BOQ57_15995 PF00456 Transketolase, thiamine diphosphate binding domain BOQ57_15995 PF02779 Transketolase, pyrimidine binding domain BOQ57_15995 PF02780 Transketolase, C-terminal domain BOQ57_16000 PF02772 S-adenosylmethionine synthetase, central domain BOQ57_16000 PF02773 S-adenosylmethionine synthetase, C-terminal domain BOQ57_16000 PF00438 S-adenosylmethionine synthetase, N-terminal domain BOQ57_16005 PF17283 SprT-like zinc ribbon domain BOQ57_16005 PF10263 SprT-like family BOQ57_16010 PF04231 Endonuclease I BOQ57_16015 PF04452 RNA methyltransferase BOQ57_16020 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BOQ57_16020 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BOQ57_16025 PF12729 Four helix bundle sensory module for signal transduction BOQ57_16025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_16025 PF00672 HAMP domain BOQ57_16030 PF02622 Uncharacterized ACR, COG1678 BOQ57_16035 PF03652 Holliday junction resolvase BOQ57_16040 PF00854 POT family BOQ57_16045 PF03466 LysR substrate binding domain BOQ57_16045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_16060 PF00144 Beta-lactamase BOQ57_16065 PF07726 ATPase family associated with various cellular activities (AAA) BOQ57_16065 PF17863 AAA lid domain BOQ57_16075 PF13559 Domain of unknown function (DUF4129) BOQ57_16075 PF11992 Domain of unknown function (DUF3488) BOQ57_16075 PF01841 Transglutaminase-like superfamily BOQ57_16080 PF01235 Sodium:alanine symporter family BOQ57_16085 PF00923 Transaldolase/Fructose-6-phosphate aldolase BOQ57_16100 PF03167 Uracil DNA glycosylase superfamily BOQ57_16105 PF01228 Glycine radical BOQ57_16110 PF00375 Sodium:dicarboxylate symporter family BOQ57_16115 PF00793 DAHP synthetase I family BOQ57_16120 PF13369 Transglutaminase-like superfamily BOQ57_16130 PF13847 Methyltransferase domain BOQ57_16130 PF17827 PrmC N-terminal domain BOQ57_16135 PF00472 RF-1 domain BOQ57_16135 PF03462 PCRF domain BOQ57_16140 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BOQ57_16140 PF01488 Shikimate / quinate 5-dehydrogenase BOQ57_16140 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BOQ57_16145 PF03550 Outer membrane lipoprotein LolB BOQ57_16150 PF00288 GHMP kinases N terminal domain BOQ57_16150 PF08544 GHMP kinases C terminal BOQ57_16160 PF14572 Phosphoribosyl synthetase-associated domain BOQ57_16160 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BOQ57_16165 PF00149 Calcineurin-like phosphoesterase BOQ57_16165 PF02872 5'-nucleotidase, C-terminal domain BOQ57_16170 PF01195 Peptidyl-tRNA hydrolase BOQ57_16175 PF01926 50S ribosome-binding GTPase BOQ57_16175 PF06071 Protein of unknown function (DUF933) BOQ57_16220 PF02080 TrkA-C domain BOQ57_16220 PF03600 Citrate transporter BOQ57_16225 PF04973 Nicotinamide mononucleotide transporter BOQ57_16230 PF01048 Phosphorylase superfamily BOQ57_16250 PF16657 Maltogenic Amylase, C-terminal domain BOQ57_16250 PF00128 Alpha amylase, catalytic domain BOQ57_16265 PF00005 ABC transporter BOQ57_16265 PF12848 ABC transporter BOQ57_16270 PF07690 Major Facilitator Superfamily BOQ57_16275 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg BOQ57_16275 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase BOQ57_16275 PF10371 Domain of unknown function BOQ57_16275 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II BOQ57_16275 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_16280 PF07690 Major Facilitator Superfamily BOQ57_16285 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_16295 PF00171 Aldehyde dehydrogenase family BOQ57_16300 PF04958 Arginine N-succinyltransferase beta subunit BOQ57_16305 PF00202 Aminotransferase class-III BOQ57_16310 PF00117 Glutamine amidotransferase class-I BOQ57_16320 PF00579 tRNA synthetases class I (W and Y) BOQ57_16325 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_16330 PF00834 Ribulose-phosphate 3 epimerase family BOQ57_16335 PF02086 D12 class N6 adenine-specific DNA methyltransferase BOQ57_16345 PF01761 3-dehydroquinate synthase BOQ57_16350 PF01202 Shikimate kinase BOQ57_16355 PF07660 Secretin and TonB N terminus short domain BOQ57_16355 PF00263 Bacterial type II and III secretion system protein BOQ57_16355 PF03958 Bacterial type II/III secretion system short domain BOQ57_16355 PF11741 AMIN domain BOQ57_16380 PF17092 Penicillin-binding protein OB-like domain BOQ57_16380 PF00905 Penicillin binding protein transpeptidase domain BOQ57_16380 PF00912 Transglycosylase BOQ57_16385 PF03466 LysR substrate binding domain BOQ57_16385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_16390 PF00672 HAMP domain BOQ57_16390 PF02743 Cache domain BOQ57_16390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_16405 PF03466 LysR substrate binding domain BOQ57_16405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_16430 PF12794 Mechanosensitive ion channel inner membrane domain 1 BOQ57_16430 PF12795 Mechanosensitive ion channel porin domain BOQ57_16430 PF00924 Mechanosensitive ion channel BOQ57_16435 PF03009 Glycerophosphoryl diester phosphodiesterase family BOQ57_16440 PF00672 HAMP domain BOQ57_16440 PF02743 Cache domain BOQ57_16440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_16445 PF02910 Fumarate reductase flavoprotein C-term BOQ57_16445 PF00890 FAD binding domain BOQ57_16450 PF13085 2Fe-2S iron-sulfur cluster binding domain BOQ57_16450 PF13183 4Fe-4S dicluster domain BOQ57_16455 PF02300 Fumarate reductase subunit C BOQ57_16460 PF02313 Fumarate reductase subunit D BOQ57_16480 PF06224 Winged helix DNA-binding domain BOQ57_16495 PF00501 AMP-binding enzyme BOQ57_16515 PF00072 Response regulator receiver domain BOQ57_16515 PF00486 Transcriptional regulatory protein, C terminal BOQ57_16520 PF08521 Two-component sensor kinase N-terminal BOQ57_16520 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_16530 PF00478 IMP dehydrogenase / GMP reductase domain BOQ57_16540 PF01132 Elongation factor P (EF-P) OB domain BOQ57_16540 PF08207 Elongation factor P (EF-P) KOW-like domain BOQ57_16540 PF09285 Elongation factor P, C-terminal BOQ57_16545 PF09997 Predicted membrane protein (DUF2238) BOQ57_16555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_16555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BOQ57_16565 PF08448 PAS fold BOQ57_16565 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_16575 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_16590 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_16590 PF05230 MASE2 domain BOQ57_16595 PF00313 'Cold-shock' DNA-binding domain BOQ57_16600 PF00857 Isochorismatase family BOQ57_16605 PF01494 FAD binding domain BOQ57_16610 PF04055 Radical SAM superfamily BOQ57_16610 PF00919 Uncharacterized protein family UPF0004 BOQ57_16610 PF01938 TRAM domain BOQ57_16615 PF02562 PhoH-like protein BOQ57_16620 PF02130 Uncharacterized protein family UPF0054 BOQ57_16625 PF00571 CBS domain BOQ57_16625 PF03471 Transporter associated domain BOQ57_16630 PF00795 Carbon-nitrogen hydrolase BOQ57_16635 PF07295 Zinc-ribbon containing domain BOQ57_16640 PF13603 Leucyl-tRNA synthetase, Domain 2 BOQ57_16640 PF00133 tRNA synthetases class I (I, L, M and V) BOQ57_16640 PF08264 Anticodon-binding domain of tRNA BOQ57_16655 PF01467 Cytidylyltransferase-like BOQ57_16665 PF02590 Predicted SPOUT methyltransferase BOQ57_16670 PF03717 Penicillin-binding Protein dimerisation domain BOQ57_16670 PF00905 Penicillin binding protein transpeptidase domain BOQ57_16675 PF01098 Cell cycle protein BOQ57_16680 PF01098 Cell cycle protein BOQ57_16685 PF13406 Transglycosylase SLT domain BOQ57_16690 PF03330 Lytic transglycolase BOQ57_16690 PF05036 Sporulation related domain BOQ57_16695 PF07943 Penicillin-binding protein 5, C-terminal domain BOQ57_16695 PF00768 D-alanyl-D-alanine carboxypeptidase BOQ57_16700 PF04359 Protein of unknown function (DUF493) BOQ57_16705 PF03099 Biotin/lipoate A/B protein ligase family BOQ57_16710 PF04055 Radical SAM superfamily BOQ57_16710 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BOQ57_16720 PF06821 Serine hydrolase BOQ57_16725 PF02508 Rnf-Nqr subunit, membrane protein BOQ57_16740 PF13411 MerR HTH family regulatory protein BOQ57_16745 PF01368 DHH family BOQ57_16745 PF02272 DHHA1 domain BOQ57_16745 PF17768 RecJ OB domain BOQ57_16750 PF13098 Thioredoxin-like domain BOQ57_16750 PF10411 Disulfide bond isomerase protein N-terminus BOQ57_16755 PF01741 Large-conductance mechanosensitive channel, MscL BOQ57_16760 PF17158 Membrane-associated sensor, integral membrane domain BOQ57_16760 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_16765 PF00589 Phage integrase family BOQ57_16765 PF02899 Phage integrase, N-terminal SAM-like domain BOQ57_16770 PF00258 Flavodoxin BOQ57_16775 PF01523 Putative modulator of DNA gyrase BOQ57_16780 PF01523 Putative modulator of DNA gyrase BOQ57_16790 PF03734 L,D-transpeptidase catalytic domain BOQ57_16790 PF17969 L,D-transpeptidase C-terminal domain BOQ57_16800 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BOQ57_16820 PF01568 Molydopterin dinucleotide binding domain BOQ57_16820 PF00384 Molybdopterin oxidoreductase BOQ57_16820 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_16825 PF03916 Polysulphide reductase, NrfD BOQ57_16830 PF13247 4Fe-4S dicluster domain BOQ57_16835 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_16835 PF00989 PAS fold BOQ57_16835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_16840 PF00196 Bacterial regulatory proteins, luxR family BOQ57_16840 PF00072 Response regulator receiver domain BOQ57_16845 PF07694 5TMR of 5TMR-LYT BOQ57_16845 PF06580 Histidine kinase BOQ57_16850 PF04397 LytTr DNA-binding domain BOQ57_16850 PF00072 Response regulator receiver domain BOQ57_16855 PF02554 Carbon starvation protein CstA BOQ57_16855 PF13722 5TM C-terminal transporter carbon starvation CstA BOQ57_16860 PF03575 Peptidase family S51 BOQ57_16865 PF10415 Fumarase C C-terminus BOQ57_16865 PF00206 Lyase BOQ57_16875 PF02635 DsrE/DsrF-like family BOQ57_16880 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_16880 PF03707 Bacterial signalling protein N terminal repeat BOQ57_16880 PF00563 EAL domain BOQ57_16885 PF07690 Major Facilitator Superfamily BOQ57_16890 PF00013 KH domain BOQ57_16890 PF00575 S1 RNA binding domain BOQ57_16890 PF03725 3' exoribonuclease family, domain 2 BOQ57_16890 PF01138 3' exoribonuclease family, domain 1 BOQ57_16890 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BOQ57_16895 PF00312 Ribosomal protein S15 BOQ57_16900 PF01509 TruB family pseudouridylate synthase (N terminal domain) BOQ57_16900 PF16198 tRNA pseudouridylate synthase B C-terminal domain BOQ57_16900 PF09157 Pseudouridine synthase II TruB, C-terminal BOQ57_16905 PF02033 Ribosome-binding factor A BOQ57_16910 PF04760 Translation initiation factor IF-2, N-terminal region BOQ57_16910 PF08364 Bacterial translation initiation factor IF-2 associated region BOQ57_16910 PF00009 Elongation factor Tu GTP binding domain BOQ57_16910 PF11987 Translation-initiation factor 2 BOQ57_16915 PF00575 S1 RNA binding domain BOQ57_16915 PF08529 NusA N-terminal domain BOQ57_16915 PF13184 NusA-like KH domain BOQ57_16920 PF17384 RimP C-terminal SH3 domain BOQ57_16920 PF02576 RimP N-terminal domain BOQ57_16935 PF03840 Preprotein translocase SecG subunit BOQ57_16940 PF00121 Triosephosphate isomerase BOQ57_16945 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BOQ57_16945 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BOQ57_16945 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BOQ57_16945 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BOQ57_16950 PF00809 Pterin binding enzyme BOQ57_16955 PF17862 AAA+ lid domain BOQ57_16955 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_16955 PF06480 FtsH Extracellular BOQ57_16955 PF01434 Peptidase family M41 BOQ57_16960 PF01728 FtsJ-like methyltransferase BOQ57_16965 PF01985 CRS1 / YhbY (CRM) domain BOQ57_16975 PF03449 Transcription elongation factor, N-terminal BOQ57_16975 PF01272 Transcription elongation factor, GreA/GreB, C-term BOQ57_16980 PF13677 Membrane MotB of proton-channel complex MotA/MotB BOQ57_16980 PF00691 OmpA family BOQ57_16985 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_16990 PF02609 Exonuclease VII small subunit BOQ57_16995 PF00348 Polyprenyl synthetase BOQ57_17000 PF02779 Transketolase, pyrimidine binding domain BOQ57_17000 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BOQ57_17000 PF02780 Transketolase, C-terminal domain BOQ57_17005 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_17005 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_17015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_17020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_17020 PF00005 ABC transporter BOQ57_17025 PF04608 Phosphatidylglycerophosphatase A BOQ57_17030 PF00586 AIR synthase related protein, N-terminal domain BOQ57_17030 PF02769 AIR synthase related protein, C-terminal domain BOQ57_17035 PF01029 NusB family BOQ57_17040 PF00885 6,7-dimethyl-8-ribityllumazine synthase BOQ57_17050 PF00925 GTP cyclohydrolase II BOQ57_17050 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BOQ57_17055 PF00677 Lumazine binding domain BOQ57_17060 PF01872 RibD C-terminal domain BOQ57_17060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BOQ57_17065 PF03477 ATP cone domain BOQ57_17075 PF00464 Serine hydroxymethyltransferase BOQ57_17090 PF02613 Nitrate reductase delta subunit BOQ57_17110 PF03707 Bacterial signalling protein N terminal repeat BOQ57_17110 PF13188 PAS domain BOQ57_17110 PF00563 EAL domain BOQ57_17110 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_17120 PF16177 Acetyl-coenzyme A synthetase N-terminus BOQ57_17120 PF00501 AMP-binding enzyme BOQ57_17120 PF13193 AMP-binding enzyme C-terminal domain BOQ57_17125 PF01220 Dehydroquinase class II BOQ57_17130 PF00364 Biotin-requiring enzyme BOQ57_17135 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BOQ57_17135 PF02785 Biotin carboxylase C-terminal domain BOQ57_17135 PF00289 Biotin carboxylase, N-terminal domain BOQ57_17145 PF00474 Sodium:solute symporter family BOQ57_17150 PF00367 phosphotransferase system, EIIB BOQ57_17150 PF02378 Phosphotransferase system, EIIC BOQ57_17150 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 BOQ57_17155 PF03466 LysR substrate binding domain BOQ57_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_17160 PF08240 Alcohol dehydrogenase GroES-like domain BOQ57_17160 PF00107 Zinc-binding dehydrogenase BOQ57_17170 PF01842 ACT domain BOQ57_17170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BOQ57_17170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_17175 PF14602 Hexapeptide repeat of succinyl-transferase BOQ57_17175 PF12464 Maltose acetyltransferase BOQ57_17180 PF02743 Cache domain BOQ57_17180 PF00672 HAMP domain BOQ57_17180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_17190 PF00881 Nitroreductase family BOQ57_17195 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BOQ57_17195 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_17200 PF01343 Peptidase family S49 BOQ57_17215 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BOQ57_17215 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_17220 PF07023 Protein of unknown function (DUF1315) BOQ57_17225 PF17763 Glutaminase/Asparaginase C-terminal domain BOQ57_17225 PF00710 Asparaginase, N-terminal BOQ57_17230 PF03616 Sodium/glutamate symporter BOQ57_17235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_17235 PF02743 Cache domain BOQ57_17235 PF00672 HAMP domain BOQ57_17240 PF03462 PCRF domain BOQ57_17240 PF00472 RF-1 domain BOQ57_17245 PF00152 tRNA synthetases class II (D, K and N) BOQ57_17245 PF01336 OB-fold nucleic acid binding domain BOQ57_17250 PF02567 Phenazine biosynthesis-like protein BOQ57_17255 PF00175 Oxidoreductase NAD-binding domain BOQ57_17255 PF00667 FAD binding domain BOQ57_17255 PF00258 Flavodoxin BOQ57_17260 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BOQ57_17260 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BOQ57_17265 PF01507 Phosphoadenosine phosphosulfate reductase family BOQ57_17270 PF04069 Substrate binding domain of ABC-type glycine betaine transport system BOQ57_17275 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_17280 PF00005 ABC transporter BOQ57_17280 PF00571 CBS domain BOQ57_17285 PF00186 Dihydrofolate reductase BOQ57_17290 PF12821 Threonine/Serine exporter, ThrE BOQ57_17295 PF06738 Putative threonine/serine exporter BOQ57_17305 PF00994 Probable molybdopterin binding domain BOQ57_17315 PF00109 Beta-ketoacyl synthase, N-terminal domain BOQ57_17315 PF02801 Beta-ketoacyl synthase, C-terminal domain BOQ57_17330 PF02801 Beta-ketoacyl synthase, C-terminal domain BOQ57_17330 PF00109 Beta-ketoacyl synthase, N-terminal domain BOQ57_17355 PF00221 Aromatic amino acid lyase BOQ57_17365 PF07977 FabA-like domain BOQ57_17370 PF13193 AMP-binding enzyme C-terminal domain BOQ57_17370 PF00501 AMP-binding enzyme BOQ57_17380 PF00550 Phosphopantetheine attachment site BOQ57_17385 PF00550 Phosphopantetheine attachment site BOQ57_17420 PF00034 Cytochrome c BOQ57_17420 PF03150 Di-haem cytochrome c peroxidase BOQ57_17425 PF00194 Eukaryotic-type carbonic anhydrase BOQ57_17430 PF04227 Indigoidine synthase A like protein BOQ57_17435 PF00294 pfkB family carbohydrate kinase BOQ57_17440 PF04324 BFD-like [2Fe-2S] binding domain BOQ57_17440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BOQ57_17440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BOQ57_17440 PF18267 Rubredoxin NAD+ reductase C-terminal domain BOQ57_17440 PF13806 Rieske-like [2Fe-2S] domain BOQ57_17440 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_17445 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BOQ57_17445 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BOQ57_17445 PF04324 BFD-like [2Fe-2S] binding domain BOQ57_17445 PF18267 Rubredoxin NAD+ reductase C-terminal domain BOQ57_17445 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_17445 PF13806 Rieske-like [2Fe-2S] domain BOQ57_17450 PF00005 ABC transporter BOQ57_17455 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_17460 PF00005 ABC transporter BOQ57_17470 PF14824 Sirohaem biosynthesis protein central BOQ57_17470 PF10414 Sirohaem synthase dimerisation region BOQ57_17470 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BOQ57_17475 PF04324 BFD-like [2Fe-2S] binding domain BOQ57_17475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BOQ57_17475 PF01568 Molydopterin dinucleotide binding domain BOQ57_17475 PF00384 Molybdopterin oxidoreductase BOQ57_17490 PF00582 Universal stress protein family BOQ57_17500 PF00171 Aldehyde dehydrogenase family BOQ57_17505 PF00696 Amino acid kinase family BOQ57_17505 PF01472 PUA domain BOQ57_17510 PF07417 Sigma factor-binding transcriptional regulator Crl BOQ57_17520 PF00156 Phosphoribosyl transferase domain BOQ57_17525 PF07687 Peptidase dimerisation domain BOQ57_17525 PF01546 Peptidase family M20/M25/M40 BOQ57_17530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_17530 PF00005 ABC transporter BOQ57_17535 PF00005 ABC transporter BOQ57_17535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BOQ57_17545 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_17545 PF12911 N-terminal TM domain of oligopeptide transport permease C BOQ57_17550 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_17555 PF00593 TonB dependent receptor BOQ57_17555 PF07715 TonB-dependent Receptor Plug Domain BOQ57_17565 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_17570 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_17575 PF02472 Biopolymer transport protein ExbD/TolR BOQ57_17590 PF06483 Chitinase C BOQ57_17590 PF00704 Glycosyl hydrolases family 18 BOQ57_17625 PF00749 tRNA synthetases class I (E and Q), catalytic domain BOQ57_17630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_17630 PF00672 HAMP domain BOQ57_17640 PF00313 'Cold-shock' DNA-binding domain BOQ57_17680 PF00929 Exonuclease BOQ57_17685 PF03193 RsgA GTPase BOQ57_17690 PF02666 Phosphatidylserine decarboxylase BOQ57_17695 PF09905 DNA-binding protein VF530 BOQ57_17710 PF04224 Protein of unknown function, DUF417 BOQ57_17715 PF02627 Carboxymuconolactone decarboxylase family BOQ57_17720 PF12852 Cupin BOQ57_17720 PF12833 Helix-turn-helix domain BOQ57_17730 PF03707 Bacterial signalling protein N terminal repeat BOQ57_17730 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_17730 PF00563 EAL domain BOQ57_17735 PF06877 Regulator of ribonuclease activity B BOQ57_17745 PF00801 PKD domain BOQ57_17745 PF05547 Immune inhibitor A peptidase M6 BOQ57_17755 PF00563 EAL domain BOQ57_17755 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_17755 PF00360 Phytochrome region BOQ57_17755 PF01590 GAF domain BOQ57_17765 PF05598 Transposase domain (DUF772) BOQ57_17765 PF01609 Transposase DDE domain BOQ57_17815 PF02899 Phage integrase, N-terminal SAM-like domain BOQ57_17815 PF00589 Phage integrase family BOQ57_17830 PF00589 Phage integrase family BOQ57_17845 PF00561 alpha/beta hydrolase fold BOQ57_17850 PF00664 ABC transporter transmembrane region BOQ57_17850 PF00005 ABC transporter BOQ57_17855 PF06004 Bacterial protein of unknown function (DUF903) BOQ57_17860 PF00581 Rhodanese-like domain BOQ57_17865 PF04960 Glutaminase BOQ57_17870 PF04320 Protein with unknown function (DUF469) BOQ57_17875 PF02390 Putative methyltransferase BOQ57_17880 PF01483 Proprotein convertase P-domain BOQ57_17880 PF04389 Peptidase family M28 BOQ57_17885 PF00155 Aminotransferase class I and II BOQ57_17890 PF12792 CSS motif domain associated with EAL BOQ57_17890 PF00563 EAL domain BOQ57_17895 PF01370 NAD dependent epimerase/dehydratase family BOQ57_17895 PF08338 Domain of unknown function (DUF1731) BOQ57_17905 PF00005 ABC transporter BOQ57_17910 PF13472 GDSL-like Lipase/Acylhydrolase family BOQ57_17915 PF01584 CheW-like domain BOQ57_17915 PF00072 Response regulator receiver domain BOQ57_18100 PF02080 TrkA-C domain BOQ57_18100 PF06826 Predicted Permease Membrane Region BOQ57_18105 PF03006 Haemolysin-III related BOQ57_18110 PF00282 Pyridoxal-dependent decarboxylase conserved domain BOQ57_18115 PF04279 Intracellular septation protein A BOQ57_18120 PF03795 YCII-related domain BOQ57_18125 PF00459 Inositol monophosphatase family BOQ57_18135 PF00483 Nucleotidyl transferase BOQ57_18140 PF00854 POT family BOQ57_18145 PF00072 Response regulator receiver domain BOQ57_18175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_18180 PF02321 Outer membrane efflux protein BOQ57_18185 PF01207 Dihydrouridine synthase (Dus) BOQ57_18190 PF02954 Bacterial regulatory protein, Fis family BOQ57_18205 PF02463 RecF/RecN/SMC N terminal domain BOQ57_18220 PF02384 N-6 DNA Methylase BOQ57_18225 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A BOQ57_18270 PF04002 RadC-like JAB domain BOQ57_18295 PF01695 IstB-like ATP binding protein BOQ57_18300 PF00665 Integrase core domain BOQ57_18325 PF05930 Prophage CP4-57 regulatory protein (AlpA) BOQ57_18335 PF00816 H-NS histone family BOQ57_18345 PF01810 LysE type translocator BOQ57_18370 PF01521 Iron-sulphur cluster biosynthesis BOQ57_18380 PF00654 Voltage gated chloride channel BOQ57_18385 PF00202 Aminotransferase class-III BOQ57_18400 PF01569 PAP2 superfamily BOQ57_18410 PF11849 Domain of unknown function (DUF3369) BOQ57_18420 PF00893 Small Multidrug Resistance protein BOQ57_18425 PF00893 Small Multidrug Resistance protein BOQ57_18430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_18435 PF00905 Penicillin binding protein transpeptidase domain BOQ57_18435 PF14814 Bifunctional transglycosylase second domain BOQ57_18435 PF00912 Transglycosylase BOQ57_18440 PF08482 ATP-dependent helicase C-terminal BOQ57_18440 PF00271 Helicase conserved C-terminal domain BOQ57_18440 PF04408 Helicase associated domain (HA2) BOQ57_18440 PF00270 DEAD/DEAH box helicase BOQ57_18450 PF03749 Sugar fermentation stimulation protein RE domain BOQ57_18450 PF17746 SfsA N-terminal OB domain BOQ57_18455 PF01258 Prokaryotic dksA/traR C4-type zinc finger BOQ57_18460 PF00749 tRNA synthetases class I (E and Q), catalytic domain BOQ57_18465 PF12627 Probable RNA and SrmB- binding site of polymerase A BOQ57_18465 PF01743 Poly A polymerase head domain BOQ57_18465 PF12626 Polymerase A arginine-rich C-terminus BOQ57_18470 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BOQ57_18475 PF02548 Ketopantoate hydroxymethyltransferase BOQ57_18480 PF02569 Pantoate-beta-alanine ligase BOQ57_18500 PF01869 BadF/BadG/BcrA/BcrD ATPase family BOQ57_18505 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component BOQ57_18510 PF01061 ABC-2 type transporter BOQ57_18515 PF00005 ABC transporter BOQ57_18520 PF00156 Phosphoribosyl transferase domain BOQ57_18525 PF00440 Bacterial regulatory proteins, tetR family BOQ57_18530 PF02441 Flavoprotein BOQ57_18535 PF02875 Mur ligase family, glutamate ligase domain BOQ57_18535 PF08245 Mur ligase middle domain BOQ57_18535 PF01225 Mur ligase family, catalytic domain BOQ57_18540 PF00719 Inorganic pyrophosphatase BOQ57_18555 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) BOQ57_18570 PF00005 ABC transporter BOQ57_18590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_18590 PF08447 PAS fold BOQ57_18620 PF02080 TrkA-C domain BOQ57_18620 PF03600 Citrate transporter BOQ57_18625 PF00009 Elongation factor Tu GTP binding domain BOQ57_18630 PF01507 Phosphoadenosine phosphosulfate reductase family BOQ57_18635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BOQ57_18635 PF14824 Sirohaem biosynthesis protein central BOQ57_18635 PF10414 Sirohaem synthase dimerisation region BOQ57_18640 PF01145 SPFH domain / Band 7 family BOQ57_18640 PF16200 C-terminal region of band_7 BOQ57_18645 PF01957 NfeD-like C-terminal, partner-binding BOQ57_18650 PF01380 SIS domain BOQ57_18650 PF00571 CBS domain BOQ57_18655 PF00005 ABC transporter BOQ57_18655 PF12848 ABC transporter BOQ57_18665 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BOQ57_18670 PF03466 LysR substrate binding domain BOQ57_18670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_18675 PF02525 Flavodoxin-like fold BOQ57_18705 PF00474 Sodium:solute symporter family BOQ57_18710 PF17969 L,D-transpeptidase C-terminal domain BOQ57_18710 PF03734 L,D-transpeptidase catalytic domain BOQ57_18715 PF00924 Mechanosensitive ion channel BOQ57_18720 PF00871 Acetokinase family BOQ57_18725 PF04074 YhcH/YjgK/YiaL BOQ57_18735 PF07732 Multicopper oxidase BOQ57_18735 PF07731 Multicopper oxidase BOQ57_18735 PF00394 Multicopper oxidase BOQ57_18740 PF01177 Asp/Glu/Hydantoin racemase BOQ57_18745 PF01810 LysE type translocator BOQ57_18755 PF00392 Bacterial regulatory proteins, gntR family BOQ57_18755 PF00155 Aminotransferase class I and II BOQ57_18780 PF00209 Sodium:neurotransmitter symporter family BOQ57_18790 PF00209 Sodium:neurotransmitter symporter family BOQ57_18810 PF07690 Major Facilitator Superfamily BOQ57_18820 PF01037 Lrp/AsnC ligand binding domain BOQ57_18835 PF01047 MarR family BOQ57_18840 PF02566 OsmC-like protein BOQ57_18845 PF00107 Zinc-binding dehydrogenase BOQ57_18845 PF16884 N-terminal domain of oxidoreductase BOQ57_18850 PF00293 NUDIX domain BOQ57_18860 PF01641 SelR domain BOQ57_18865 PF00128 Alpha amylase, catalytic domain BOQ57_18865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BOQ57_18870 PF00128 Alpha amylase, catalytic domain BOQ57_18870 PF02806 Alpha amylase, C-terminal all-beta domain BOQ57_18870 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BOQ57_18875 PF02446 4-alpha-glucanotransferase BOQ57_18880 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BOQ57_18880 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BOQ57_18885 PF01263 Aldose 1-epimerase BOQ57_18890 PF02445 Quinolinate synthetase A protein BOQ57_18895 PF00672 HAMP domain BOQ57_18895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_18970 PF16331 TolA binding protein trimerisation BOQ57_18970 PF13174 Tetratricopeptide repeat BOQ57_18975 PF00691 OmpA family BOQ57_18980 PF04052 TolB amino-terminal domain BOQ57_18980 PF07676 WD40-like Beta Propeller Repeat BOQ57_18990 PF02472 Biopolymer transport protein ExbD/TolR BOQ57_18995 PF01618 MotA/TolQ/ExbB proton channel family BOQ57_19000 PF03061 Thioesterase superfamily BOQ57_19005 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) BOQ57_19010 PF08173 Membrane bound YbgT-like protein BOQ57_19015 PF02322 Cytochrome bd terminal oxidase subunit II BOQ57_19020 PF01654 Cytochrome bd terminal oxidase subunit I BOQ57_19025 PF05496 Holliday junction DNA helicase RuvB P-loop domain BOQ57_19025 PF05491 RuvB C-terminal winged helix domain BOQ57_19025 PF17864 RuvB AAA lid domain BOQ57_19030 PF01330 RuvA N terminal domain BOQ57_19030 PF07499 RuvA, C-terminal domain BOQ57_19035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_19035 PF00672 HAMP domain BOQ57_19040 PF04073 Aminoacyl-tRNA editing domain BOQ57_19040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BOQ57_19040 PF03129 Anticodon binding domain BOQ57_19045 PF00106 short chain dehydrogenase BOQ57_19060 PF00378 Enoyl-CoA hydratase/isomerase BOQ57_19065 PF10952 Protein of unknown function (DUF2753) BOQ57_19070 PF00132 Bacterial transferase hexapeptide (six repeats) BOQ57_19080 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BOQ57_19095 PF02594 Uncharacterised ACR, YggU family COG1872 BOQ57_19100 PF02325 YGGT family BOQ57_19105 PF03807 NADP oxidoreductase coenzyme F420-dependent BOQ57_19105 PF14748 Pyrroline-5-carboxylate reductase dimerisation BOQ57_19110 PF01168 Alanine racemase, N-terminal domain BOQ57_19115 PF00437 Type II/IV secretion system protein BOQ57_19120 PF00437 Type II/IV secretion system protein BOQ57_19125 PF03883 Peroxide stress protein YaaA BOQ57_19130 PF00271 Helicase conserved C-terminal domain BOQ57_19130 PF00270 DEAD/DEAH box helicase BOQ57_19135 PF05175 Methyltransferase small domain BOQ57_19140 PF05525 Branched-chain amino acid transport protein BOQ57_19145 PF05525 Branched-chain amino acid transport protein BOQ57_19160 PF01475 Ferric uptake regulator family BOQ57_19165 PF01207 Dihydrouridine synthase (Dus) BOQ57_19175 PF00216 Bacterial DNA-binding protein BOQ57_19180 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ BOQ57_19185 PF07238 PilZ domain BOQ57_19190 PF18073 Rubredoxin metal binding domain BOQ57_19205 PF18429 Domain of unknown function (DUF5609) BOQ57_19215 PF05231 MASE1 BOQ57_19215 PF08448 PAS fold BOQ57_19215 PF00563 EAL domain BOQ57_19215 PF13426 PAS domain BOQ57_19215 PF08447 PAS fold BOQ57_19215 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_19220 PF01048 Phosphorylase superfamily BOQ57_19225 PF01676 Metalloenzyme superfamily BOQ57_19230 PF02885 Glycosyl transferase family, helical bundle domain BOQ57_19230 PF00591 Glycosyl transferase family, a/b domain BOQ57_19230 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain BOQ57_19235 PF01791 DeoC/LacD family aldolase BOQ57_19245 PF01773 Na+ dependent nucleoside transporter N-terminus BOQ57_19245 PF07670 Nucleoside recognition BOQ57_19245 PF07662 Na+ dependent nucleoside transporter C-terminus BOQ57_19250 PF01026 TatD related DNase BOQ57_19255 PF08334 Type II secretion system (T2SS), protein G BOQ57_19255 PF07963 Prokaryotic N-terminal methylation motif BOQ57_19265 PF05958 tRNA (Uracil-5-)-methyltransferase BOQ57_19265 PF01938 TRAM domain BOQ57_19270 PF00909 Ammonium Transporter Family BOQ57_19275 PF17191 RecG wedge domain BOQ57_19275 PF00270 DEAD/DEAH box helicase BOQ57_19275 PF13749 Putative ATP-dependent DNA helicase recG C-terminal BOQ57_19310 PF00589 Phage integrase family BOQ57_19310 PF13356 Arm DNA-binding domain BOQ57_19325 PF03739 Lipopolysaccharide export system permease LptF/LptG BOQ57_19330 PF03739 Lipopolysaccharide export system permease LptF/LptG BOQ57_19335 PF00883 Cytosol aminopeptidase family, catalytic domain BOQ57_19335 PF02789 Cytosol aminopeptidase family, N-terminal domain BOQ57_19340 PF04364 DNA polymerase III chi subunit, HolC BOQ57_19345 PF08264 Anticodon-binding domain of tRNA BOQ57_19345 PF00133 tRNA synthetases class I (I, L, M and V) BOQ57_19345 PF10458 Valyl tRNA synthetase tRNA binding arm BOQ57_19350 PF01595 Cyclin M transmembrane N-terminal domain BOQ57_19350 PF03471 Transporter associated domain BOQ57_19350 PF00571 CBS domain BOQ57_19355 PF09335 SNARE associated Golgi protein BOQ57_19360 PF00768 D-alanyl-D-alanine carboxypeptidase BOQ57_19400 PF02599 Global regulator protein family BOQ57_19405 PF01842 ACT domain BOQ57_19405 PF13840 ACT domain BOQ57_19405 PF00696 Amino acid kinase family BOQ57_19410 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BOQ57_19410 PF02272 DHHA1 domain BOQ57_19410 PF01411 tRNA synthetases class II (A) BOQ57_19415 PF02631 RecX family BOQ57_19420 PF00154 recA bacterial DNA recombination protein BOQ57_19425 PF02464 Competence-damaged protein BOQ57_19430 PF05192 MutS domain III BOQ57_19430 PF05188 MutS domain II BOQ57_19430 PF05190 MutS family domain IV BOQ57_19430 PF01624 MutS domain I BOQ57_19430 PF00488 MutS domain V BOQ57_19435 PF02028 BCCT, betaine/carnitine/choline family transporter BOQ57_19450 PF04222 Protein of unknown function (DUF416) BOQ57_19455 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_19460 PF01476 LysM domain BOQ57_19460 PF08525 Opacity-associated protein A N-terminal motif BOQ57_19460 PF01551 Peptidase family M23 BOQ57_19480 PF01297 Zinc-uptake complex component A periplasmic BOQ57_19485 PF00005 ABC transporter BOQ57_19490 PF00950 ABC 3 transport family BOQ57_19495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_19495 PF03466 LysR substrate binding domain BOQ57_19500 PF00892 EamA-like transporter family BOQ57_19505 PF03167 Uracil DNA glycosylase superfamily BOQ57_19510 PF00892 EamA-like transporter family BOQ57_19520 PF01541 GIY-YIG catalytic domain BOQ57_19535 PF04012 PspA/IM30 family BOQ57_19540 PF01553 Acyltransferase BOQ57_19565 PF00578 AhpC/TSA family BOQ57_19570 PF01556 DnaJ C terminal domain BOQ57_19570 PF00226 DnaJ domain BOQ57_19570 PF00684 DnaJ central domain BOQ57_19600 PF07690 Major Facilitator Superfamily BOQ57_19605 PF03466 LysR substrate binding domain BOQ57_19605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_19615 PF00521 DNA gyrase/topoisomerase IV, subunit A BOQ57_19615 PF03989 DNA gyrase C-terminal domain, beta-propeller BOQ57_19620 PF00204 DNA gyrase B BOQ57_19620 PF00986 DNA gyrase B subunit, carboxyl terminus BOQ57_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_19620 PF01751 Toprim domain BOQ57_19625 PF04632 Fusaric acid resistance protein family BOQ57_19630 PF00529 HlyD membrane-fusion protein of T1SS BOQ57_19630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_19635 PF07869 Protein of unknown function (DUF1656) BOQ57_19645 PF00293 NUDIX domain BOQ57_19650 PF05728 Uncharacterised protein family (UPF0227) BOQ57_19655 PF00149 Calcineurin-like phosphoesterase BOQ57_19660 PF06853 Protein of unknown function (DUF1249) BOQ57_19665 PF00293 NUDIX domain BOQ57_19670 PF02321 Outer membrane efflux protein BOQ57_19675 PF01467 Cytidylyltransferase-like BOQ57_19675 PF00294 pfkB family carbohydrate kinase BOQ57_19680 PF03279 Bacterial lipid A biosynthesis acyltransferase BOQ57_19695 PF01865 Protein of unknown function DUF47 BOQ57_19700 PF01384 Phosphate transporter family BOQ57_19705 PF04073 Aminoacyl-tRNA editing domain BOQ57_19710 PF07350 Protein of unknown function (DUF1479) BOQ57_19730 PF00392 Bacterial regulatory proteins, gntR family BOQ57_19730 PF00155 Aminotransferase class I and II BOQ57_19735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_19735 PF03466 LysR substrate binding domain BOQ57_19740 PF03788 LrgA family BOQ57_19745 PF04172 LrgB-like family BOQ57_19760 PF01966 HD domain BOQ57_19760 PF01743 Poly A polymerase head domain BOQ57_19760 PF12627 Probable RNA and SrmB- binding site of polymerase A BOQ57_19765 PF13401 AAA domain BOQ57_19765 PF01471 Putative peptidoglycan binding domain BOQ57_19770 PF16537 Type II secretion system protein B BOQ57_19775 PF10576 Iron-sulfur binding domain of endonuclease III BOQ57_19775 PF14815 NUDIX domain BOQ57_19775 PF00730 HhH-GPD superfamily base excision DNA repair protein BOQ57_19775 PF00633 Helix-hairpin-helix motif BOQ57_19780 PF04362 Bacterial Fe(2+) trafficking BOQ57_19785 PF01464 Transglycosylase SLT domain BOQ57_19785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BOQ57_19790 PF04076 Bacterial OB fold (BOF) protein BOQ57_19795 PF00657 GDSL-like Lipase/Acylhydrolase BOQ57_19805 PF01389 OmpA-like transmembrane domain BOQ57_19805 PF00691 OmpA family BOQ57_19810 PF03886 ABC-type transport auxiliary lipoprotein component BOQ57_19815 PF02470 MlaD protein BOQ57_19820 PF04403 Paraquat-inducible protein A BOQ57_19825 PF17209 Hfq protein BOQ57_19830 PF13419 Haloacid dehalogenase-like hydrolase BOQ57_19840 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_19840 PF00360 Phytochrome region BOQ57_19840 PF01590 GAF domain BOQ57_19840 PF00563 EAL domain BOQ57_19845 PF00701 Dihydrodipicolinate synthetase family BOQ57_19850 PF05175 Methyltransferase small domain BOQ57_19850 PF08468 Methyltransferase small domain N-terminal BOQ57_19855 PF00483 Nucleotidyl transferase BOQ57_19860 PF08323 Starch synthase catalytic domain BOQ57_19860 PF00534 Glycosyl transferases group 1 BOQ57_19900 PF03553 Na+/H+ antiporter family BOQ57_19905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_19905 PF03466 LysR substrate binding domain BOQ57_19910 PF13416 Bacterial extracellular solute-binding protein BOQ57_19915 PF00005 ABC transporter BOQ57_19915 PF08402 TOBE domain BOQ57_19920 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_19925 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_19930 PF00171 Aldehyde dehydrogenase family BOQ57_19940 PF00892 EamA-like transporter family BOQ57_19945 PF01037 Lrp/AsnC ligand binding domain BOQ57_19950 PF12464 Maltose acetyltransferase BOQ57_19950 PF14602 Hexapeptide repeat of succinyl-transferase BOQ57_19955 PF11941 Domain of unknown function (DUF3459) BOQ57_19955 PF00128 Alpha amylase, catalytic domain BOQ57_19960 PF00367 phosphotransferase system, EIIB BOQ57_19960 PF02378 Phosphotransferase system, EIIC BOQ57_19965 PF00356 Bacterial regulatory proteins, lacI family BOQ57_19980 PF17763 Glutaminase/Asparaginase C-terminal domain BOQ57_19980 PF00710 Asparaginase, N-terminal BOQ57_19995 PF02142 MGS-like domain BOQ57_20005 PF00210 Ferritin-like domain BOQ57_20020 PF08351 Domain of unknown function (DUF1726) BOQ57_20020 PF05127 Helicase BOQ57_20020 PF13718 GNAT acetyltransferase 2 BOQ57_20020 PF17176 tRNA-binding domain BOQ57_20030 PF00072 Response regulator receiver domain BOQ57_20030 PF01584 CheW-like domain BOQ57_20075 PF02660 Glycerol-3-phosphate acyltransferase BOQ57_20080 PF02152 Dihydroneopterin aldolase BOQ57_20085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BOQ57_20095 PF07690 Major Facilitator Superfamily BOQ57_20100 PF07683 Cobalamin synthesis protein cobW C-terminal domain BOQ57_20100 PF02492 CobW/HypB/UreG, nucleotide-binding domain BOQ57_20105 PF04030 D-arabinono-1,4-lactone oxidase BOQ57_20105 PF01565 FAD binding domain BOQ57_20110 PF01810 LysE type translocator BOQ57_20115 PF03466 LysR substrate binding domain BOQ57_20115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_20120 PF00563 EAL domain BOQ57_20120 PF12792 CSS motif domain associated with EAL BOQ57_20125 PF11791 Aconitate B N-terminal domain BOQ57_20125 PF06434 Aconitate hydratase 2 N-terminus BOQ57_20125 PF00330 Aconitase family (aconitate hydratase) BOQ57_20130 PF01734 Patatin-like phospholipase BOQ57_20135 PF12729 Four helix bundle sensory module for signal transduction BOQ57_20135 PF00672 HAMP domain BOQ57_20135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_20140 PF12729 Four helix bundle sensory module for signal transduction BOQ57_20140 PF00672 HAMP domain BOQ57_20140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_20150 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_20150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_20155 PF00364 Biotin-requiring enzyme BOQ57_20155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BOQ57_20155 PF02817 e3 binding domain BOQ57_20160 PF17831 Pyruvate dehydrogenase E1 component middle domain BOQ57_20160 PF00456 Transketolase, thiamine diphosphate binding domain BOQ57_20165 PF07729 FCD domain BOQ57_20165 PF00392 Bacterial regulatory proteins, gntR family BOQ57_20170 PF01510 N-acetylmuramoyl-L-alanine amidase BOQ57_20180 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BOQ57_20180 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BOQ57_20190 PF07963 Prokaryotic N-terminal methylation motif BOQ57_20195 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain BOQ57_20195 PF00437 Type II/IV secretion system protein BOQ57_20200 PF00482 Type II secretion system (T2SS), protein F BOQ57_20205 PF06750 Bacterial Peptidase A24 N-terminal domain BOQ57_20205 PF01478 Type IV leader peptidase family BOQ57_20210 PF01121 Dephospho-CoA kinase BOQ57_20215 PF07072 Cell division protein BOQ57_20220 PF03884 DNA gyrase inhibitor YacG BOQ57_20225 PF00293 NUDIX domain BOQ57_20235 PF07516 SecA Wing and Scaffold domain BOQ57_20235 PF01043 SecA preprotein cross-linking domain BOQ57_20235 PF07517 SecA DEAD-like domain BOQ57_20235 PF02810 SEC-C motif BOQ57_20245 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BOQ57_20250 PF12327 FtsZ family, C-terminal domain BOQ57_20250 PF00091 Tubulin/FtsZ family, GTPase domain BOQ57_20255 PF02491 SHS2 domain inserted in FTSA BOQ57_20260 PF08478 POTRA domain, FtsQ-type BOQ57_20260 PF03799 Cell division protein FtsQ BOQ57_20265 PF08245 Mur ligase middle domain BOQ57_20265 PF01225 Mur ligase family, catalytic domain BOQ57_20265 PF02875 Mur ligase family, glutamate ligase domain BOQ57_20270 PF03033 Glycosyltransferase family 28 N-terminal domain BOQ57_20270 PF04101 Glycosyltransferase family 28 C-terminal domain BOQ57_20275 PF01098 Cell cycle protein BOQ57_20280 PF08245 Mur ligase middle domain BOQ57_20280 PF02875 Mur ligase family, glutamate ligase domain BOQ57_20285 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 BOQ57_20285 PF00953 Glycosyl transferase family 4 BOQ57_20290 PF01225 Mur ligase family, catalytic domain BOQ57_20290 PF02875 Mur ligase family, glutamate ligase domain BOQ57_20290 PF08245 Mur ligase middle domain BOQ57_20295 PF02875 Mur ligase family, glutamate ligase domain BOQ57_20295 PF08245 Mur ligase middle domain BOQ57_20295 PF01225 Mur ligase family, catalytic domain BOQ57_20300 PF00905 Penicillin binding protein transpeptidase domain BOQ57_20300 PF03717 Penicillin-binding Protein dimerisation domain BOQ57_20305 PF04999 Cell division protein FtsL BOQ57_20310 PF01795 MraW methylase family BOQ57_20315 PF02381 MraZ protein, putative antitoxin-like BOQ57_20325 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BOQ57_20330 PF04348 LppC putative lipoprotein BOQ57_20335 PF02021 Uncharacterised protein family UPF0102 BOQ57_20340 PF13580 SIS domain BOQ57_20345 PF04972 BON domain BOQ57_20350 PF04386 Stringent starvation protein B BOQ57_20355 PF00043 Glutathione S-transferase, C-terminal domain BOQ57_20355 PF02798 Glutathione S-transferase, N-terminal domain BOQ57_20360 PF02167 Cytochrome C1 family BOQ57_20365 PF00032 Cytochrome b(C-terminal)/b6/petD BOQ57_20365 PF00033 Cytochrome b/b6/petB BOQ57_20370 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BOQ57_20370 PF00355 Rieske [2Fe-2S] domain BOQ57_20375 PF00380 Ribosomal protein S9/S16 BOQ57_20380 PF00572 Ribosomal protein L13 BOQ57_20385 PF03969 AFG1-like ATPase BOQ57_20395 PF00595 PDZ domain BOQ57_20395 PF13180 PDZ domain BOQ57_20400 PF13180 PDZ domain BOQ57_20430 PF01979 Amidohydrolase family BOQ57_20435 PF03841 L-seryl-tRNA selenium transferase BOQ57_20440 PF07071 KDGP aldolase BOQ57_20445 PF00874 PRD domain BOQ57_20445 PF05043 Mga helix-turn-helix domain BOQ57_20445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_20445 PF08279 HTH domain BOQ57_20450 PF00381 PTS HPr component phosphorylation site BOQ57_20455 PF03668 P-loop ATPase protein family BOQ57_20460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BOQ57_20465 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BOQ57_20470 PF04552 Sigma-54, DNA binding domain BOQ57_20470 PF00309 Sigma-54 factor, Activator interacting domain (AID) BOQ57_20470 PF04963 Sigma-54 factor, core binding domain BOQ57_20475 PF00005 ABC transporter BOQ57_20475 PF12399 Branched-chain amino acid ATP-binding cassette transporter BOQ57_20480 PF03968 OstA-like protein BOQ57_20485 PF06835 Lipopolysaccharide-assembly, LptC-related BOQ57_20495 PF01380 SIS domain BOQ57_20495 PF00571 CBS domain BOQ57_20500 PF00005 ABC transporter BOQ57_20505 PF02405 Permease MlaE BOQ57_20510 PF02470 MlaD protein BOQ57_20515 PF05494 MlaC protein BOQ57_20525 PF01722 BolA-like protein BOQ57_20530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BOQ57_20535 PF01523 Putative modulator of DNA gyrase BOQ57_20540 PF04751 Protein of unknown function (DUF615) BOQ57_20550 PF04363 Protein of unknown function (DUF496) BOQ57_20580 PF01381 Helix-turn-helix BOQ57_20580 PF07883 Cupin domain BOQ57_20585 PF03594 Benzoate membrane transport protein BOQ57_20595 PF02219 Methylenetetrahydrofolate reductase BOQ57_20610 PF00672 HAMP domain BOQ57_20610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_20615 PF03922 OmpW family BOQ57_20620 PF17158 Membrane-associated sensor, integral membrane domain BOQ57_20620 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_20625 PF17755 UvrA DNA-binding domain BOQ57_20625 PF17760 UvrA interaction domain BOQ57_20625 PF00005 ABC transporter BOQ57_20630 PF00196 Bacterial regulatory proteins, luxR family BOQ57_20635 PF00436 Single-strand binding protein family BOQ57_20645 PF16916 Dimerisation domain of Zinc Transporter BOQ57_20645 PF01545 Cation efflux family BOQ57_20655 PF00313 'Cold-shock' DNA-binding domain BOQ57_20665 PF00593 TonB dependent receptor BOQ57_20665 PF07715 TonB-dependent Receptor Plug Domain BOQ57_20670 PF01590 GAF domain BOQ57_20670 PF00563 EAL domain BOQ57_20670 PF00360 Phytochrome region BOQ57_20670 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_20675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_20675 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_20675 PF00672 HAMP domain BOQ57_20680 PF00072 Response regulator receiver domain BOQ57_20680 PF00486 Transcriptional regulatory protein, C terminal BOQ57_20705 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_20705 PF17151 Periplasmic sensor domain BOQ57_20715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BOQ57_20725 PF13538 UvrD-like helicase C-terminal domain BOQ57_20730 PF00580 UvrD/REP helicase N-terminal domain BOQ57_20730 PF12705 PD-(D/E)XK nuclease superfamily BOQ57_20730 PF13361 UvrD-like helicase C-terminal domain BOQ57_20735 PF17946 RecC C-terminal domain BOQ57_20740 PF07681 DoxX BOQ57_20745 PF02678 Pirin BOQ57_20745 PF17954 Quercetinase C-terminal cupin domain BOQ57_20755 PF03466 LysR substrate binding domain BOQ57_20755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_20765 PF07702 UTRA domain BOQ57_20765 PF00392 Bacterial regulatory proteins, gntR family BOQ57_20780 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_20790 PF00005 ABC transporter BOQ57_20790 PF12857 TOBE-like domain BOQ57_20800 PF17158 Membrane-associated sensor, integral membrane domain BOQ57_20800 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_20820 PF00583 Acetyltransferase (GNAT) family BOQ57_20825 PF00199 Catalase BOQ57_20825 PF06628 Catalase-related immune-responsive BOQ57_20850 PF00293 NUDIX domain BOQ57_20855 PF01594 AI-2E family transporter BOQ57_20870 PF04371 Porphyromonas-type peptidyl-arginine deiminase BOQ57_20875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_20875 PF03466 LysR substrate binding domain BOQ57_20880 PF00158 Sigma-54 interaction domain BOQ57_20880 PF00989 PAS fold BOQ57_20880 PF02954 Bacterial regulatory protein, Fis family BOQ57_20885 PF00465 Iron-containing alcohol dehydrogenase BOQ57_20890 PF00381 PTS HPr component phosphorylation site BOQ57_20890 PF00391 PEP-utilising enzyme, mobile domain BOQ57_20890 PF05524 PEP-utilising enzyme, N-terminal BOQ57_20890 PF03610 PTS system fructose IIA component BOQ57_20895 PF02734 DAK2 domain BOQ57_20900 PF02733 Dak1 domain BOQ57_20905 PF00860 Permease family BOQ57_20945 PF03143 Elongation factor Tu C-terminal domain BOQ57_20945 PF03144 Elongation factor Tu domain 2 BOQ57_20945 PF00009 Elongation factor Tu GTP binding domain BOQ57_20950 PF03144 Elongation factor Tu domain 2 BOQ57_20950 PF00009 Elongation factor Tu GTP binding domain BOQ57_20950 PF03764 Elongation factor G, domain IV BOQ57_20950 PF14492 Elongation Factor G, domain II BOQ57_20950 PF00679 Elongation factor G C-terminus BOQ57_20955 PF00177 Ribosomal protein S7p/S5e BOQ57_20960 PF00164 Ribosomal protein S12/S23 BOQ57_20965 PF04077 DsrH like protein BOQ57_20970 PF02635 DsrE/DsrF-like family BOQ57_20975 PF02635 DsrE/DsrF-like family BOQ57_20980 PF01042 Endoribonuclease L-PSP BOQ57_20985 PF08348 YheO-like PAS domain BOQ57_20985 PF13309 HTH domain BOQ57_20990 PF05000 RNA polymerase Rpb1, domain 4 BOQ57_20990 PF04997 RNA polymerase Rpb1, domain 1 BOQ57_20990 PF00623 RNA polymerase Rpb1, domain 2 BOQ57_20990 PF04998 RNA polymerase Rpb1, domain 5 BOQ57_20990 PF04983 RNA polymerase Rpb1, domain 3 BOQ57_20995 PF10385 RNA polymerase beta subunit external 1 domain BOQ57_20995 PF04565 RNA polymerase Rpb2, domain 3 BOQ57_20995 PF00562 RNA polymerase Rpb2, domain 6 BOQ57_20995 PF04561 RNA polymerase Rpb2, domain 2 BOQ57_20995 PF04560 RNA polymerase Rpb2, domain 7 BOQ57_20995 PF04563 RNA polymerase beta subunit BOQ57_21000 PF00542 Ribosomal protein L7/L12 C-terminal domain BOQ57_21000 PF16320 Ribosomal protein L7/L12 dimerisation domain BOQ57_21005 PF00466 Ribosomal protein L10 BOQ57_21010 PF00687 Ribosomal protein L1p/L10e family BOQ57_21015 PF03946 Ribosomal protein L11, N-terminal domain BOQ57_21015 PF00298 Ribosomal protein L11, RNA binding domain BOQ57_21020 PF02357 Transcription termination factor nusG BOQ57_21020 PF00467 KOW motif BOQ57_21025 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BOQ57_21035 PF03144 Elongation factor Tu domain 2 BOQ57_21035 PF00009 Elongation factor Tu GTP binding domain BOQ57_21035 PF03143 Elongation factor Tu C-terminal domain BOQ57_21050 PF00485 Phosphoribulokinase / Uridine kinase family BOQ57_21055 PF08279 HTH domain BOQ57_21055 PF03099 Biotin/lipoate A/B protein ligase family BOQ57_21055 PF02237 Biotin protein ligase C terminal domain BOQ57_21060 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BOQ57_21060 PF01565 FAD binding domain BOQ57_21065 PF02080 TrkA-C domain BOQ57_21065 PF02254 TrkA-N domain BOQ57_21070 PF02386 Cation transport protein BOQ57_21075 PF12852 Cupin BOQ57_21075 PF12833 Helix-turn-helix domain BOQ57_21090 PF01131 DNA topoisomerase BOQ57_21090 PF01751 Toprim domain BOQ57_21095 PF03264 NapC/NirT cytochrome c family, N-terminal region BOQ57_21100 PF01568 Molydopterin dinucleotide binding domain BOQ57_21100 PF18364 Molybdopterin oxidoreductase N-terminal domain BOQ57_21100 PF00384 Molybdopterin oxidoreductase BOQ57_21110 PF08918 PhoQ Sensor BOQ57_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_21115 PF00072 Response regulator receiver domain BOQ57_21115 PF00486 Transcriptional regulatory protein, C terminal BOQ57_21130 PF01794 Ferric reductase like transmembrane component BOQ57_21135 PF00174 Oxidoreductase molybdopterin binding domain BOQ57_21140 PF06496 Protein of unknown function (DUF1097) BOQ57_21145 PF00072 Response regulator receiver domain BOQ57_21145 PF00158 Sigma-54 interaction domain BOQ57_21155 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_21155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_21170 PF00478 IMP dehydrogenase / GMP reductase domain BOQ57_21170 PF00571 CBS domain BOQ57_21175 PF10063 Uncharacterized integral membrane protein (DUF2301) BOQ57_21185 PF01037 Lrp/AsnC ligand binding domain BOQ57_21190 PF03590 Aspartate-ammonia ligase BOQ57_21200 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_21200 PF02861 Clp amino terminal domain, pathogenicity island component BOQ57_21200 PF17871 AAA lid domain BOQ57_21200 PF07724 AAA domain (Cdc48 subfamily) BOQ57_21200 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_21210 PF01479 S4 domain BOQ57_21210 PF00849 RNA pseudouridylate synthase BOQ57_21215 PF13525 Outer membrane lipoprotein BOQ57_21220 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_21220 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_21225 PF00375 Sodium:dicarboxylate symporter family BOQ57_21230 PF03313 Serine dehydratase alpha chain BOQ57_21240 PF02233 NAD(P) transhydrogenase beta subunit BOQ57_21245 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BOQ57_21245 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BOQ57_21245 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BOQ57_21250 PF00465 Iron-containing alcohol dehydrogenase BOQ57_21255 PF06719 AraC-type transcriptional regulator N-terminus BOQ57_21255 PF12833 Helix-turn-helix domain BOQ57_21260 PF08212 Lipocalin-like domain BOQ57_21265 PF02743 Cache domain BOQ57_21265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_21265 PF00672 HAMP domain BOQ57_21270 PF02666 Phosphatidylserine decarboxylase BOQ57_21285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BOQ57_21285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BOQ57_21290 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain BOQ57_21290 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain BOQ57_21295 PF02863 Arginine repressor, C-terminal domain BOQ57_21295 PF01316 Arginine repressor, DNA binding domain BOQ57_21300 PF03606 C4-dicarboxylate anaerobic carrier BOQ57_21305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BOQ57_21305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BOQ57_21310 PF00696 Amino acid kinase family BOQ57_21330 PF00672 HAMP domain BOQ57_21330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_21330 PF02743 Cache domain BOQ57_21335 PF02653 Branched-chain amino acid transport system / permease component BOQ57_21340 PF00005 ABC transporter BOQ57_21345 PF13407 Periplasmic binding protein domain BOQ57_21350 PF16353 Domain of unknown function(DUF4981) BOQ57_21350 PF02929 Beta galactosidase small chain BOQ57_21350 PF00703 Glycosyl hydrolases family 2 BOQ57_21350 PF02836 Glycosyl hydrolases family 2, TIM barrel domain BOQ57_21350 PF02837 Glycosyl hydrolases family 2, sugar binding domain BOQ57_21355 PF00356 Bacterial regulatory proteins, lacI family BOQ57_21360 PF16363 GDP-mannose 4,6 dehydratase BOQ57_21365 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain BOQ57_21365 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain BOQ57_21370 PF00288 GHMP kinases N terminal domain BOQ57_21370 PF10509 Galactokinase galactose-binding signature BOQ57_21370 PF08544 GHMP kinases C terminal BOQ57_21375 PF01263 Aldose 1-epimerase BOQ57_21380 PF00248 Aldo/keto reductase family BOQ57_21385 PF02673 Bacitracin resistance protein BacA BOQ57_21390 PF12973 ChrR Cupin-like domain BOQ57_21395 PF04545 Sigma-70, region 4 BOQ57_21395 PF04542 Sigma-70 region 2 BOQ57_21405 PF05746 DALR anticodon binding domain BOQ57_21405 PF03485 Arginyl tRNA synthetase N terminal domain BOQ57_21405 PF00750 tRNA synthetases class I (R) BOQ57_21415 PF00227 Proteasome subunit BOQ57_21420 PF00004 ATPase family associated with various cellular activities (AAA) BOQ57_21420 PF10431 C-terminal, D2-small domain, of ClpB protein BOQ57_21420 PF07724 AAA domain (Cdc48 subfamily) BOQ57_21425 PF07690 Major Facilitator Superfamily BOQ57_21440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_21445 PF00005 ABC transporter BOQ57_21460 PF18267 Rubredoxin NAD+ reductase C-terminal domain BOQ57_21460 PF04324 BFD-like [2Fe-2S] binding domain BOQ57_21460 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BOQ57_21460 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BOQ57_21460 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_21465 PF13806 Rieske-like [2Fe-2S] domain BOQ57_21470 PF01226 Formate/nitrite transporter BOQ57_21475 PF10414 Sirohaem synthase dimerisation region BOQ57_21475 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BOQ57_21475 PF14824 Sirohaem biosynthesis protein central BOQ57_21480 PF01769 Divalent cation transporter BOQ57_21480 PF00571 CBS domain BOQ57_21480 PF03448 MgtE intracellular N domain BOQ57_21485 PF00672 HAMP domain BOQ57_21485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BOQ57_21490 PF03737 Aldolase/RraA BOQ57_21495 PF02592 Putative vitamin uptake transporter BOQ57_21505 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BOQ57_21510 PF00034 Cytochrome c BOQ57_21515 PF00570 HRDC domain BOQ57_21515 PF09382 RQC domain BOQ57_21515 PF00271 Helicase conserved C-terminal domain BOQ57_21515 PF16124 RecQ zinc-binding BOQ57_21515 PF00270 DEAD/DEAH box helicase BOQ57_21520 PF03061 Thioesterase superfamily BOQ57_21540 PF03473 MOSC domain BOQ57_21540 PF03475 3-alpha domain BOQ57_21545 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_21550 PF00528 Binding-protein-dependent transport system inner membrane component BOQ57_21555 PF00005 ABC transporter BOQ57_21555 PF08402 TOBE domain BOQ57_21560 PF13416 Bacterial extracellular solute-binding protein BOQ57_21565 PF13416 Bacterial extracellular solute-binding protein BOQ57_21570 PF00202 Aminotransferase class-III BOQ57_21575 PF00120 Glutamine synthetase, catalytic domain BOQ57_21580 PF01258 Prokaryotic dksA/traR C4-type zinc finger BOQ57_21595 PF05981 CreA protein BOQ57_21600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BOQ57_21600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BOQ57_21605 PF00012 Hsp70 protein BOQ57_21620 PF00128 Alpha amylase, catalytic domain BOQ57_21620 PF02903 Alpha amylase, N-terminal ig-like domain BOQ57_21635 PF05958 tRNA (Uracil-5-)-methyltransferase BOQ57_21640 PF00072 Response regulator receiver domain BOQ57_21640 PF00486 Transcriptional regulatory protein, C terminal BOQ57_21645 PF00672 HAMP domain BOQ57_21645 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_21645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_21655 PF00390 Malic enzyme, N-terminal domain BOQ57_21655 PF03949 Malic enzyme, NAD binding domain BOQ57_21660 PF13460 NAD(P)H-binding BOQ57_21660 PF11066 Protein of unknown function (DUF2867) BOQ57_21665 PF01197 Ribosomal protein L31 BOQ57_21670 PF17764 3′ DNA-binding domain (3′BD) BOQ57_21670 PF00270 DEAD/DEAH box helicase BOQ57_21670 PF18074 Primosomal protein N C-terminal domain BOQ57_21670 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BOQ57_21670 PF00271 Helicase conserved C-terminal domain BOQ57_21680 PF01389 OmpA-like transmembrane domain BOQ57_21680 PF00691 OmpA family BOQ57_21685 PF00291 Pyridoxal-phosphate dependent enzyme BOQ57_21685 PF00585 C-terminal regulatory domain of Threonine dehydratase BOQ57_21690 PF00920 Dehydratase family BOQ57_21695 PF01063 Amino-transferase class IV BOQ57_21705 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BOQ57_21705 PF00205 Thiamine pyrophosphate enzyme, central domain BOQ57_21705 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BOQ57_21710 PF01078 Magnesium chelatase, subunit ChlI BOQ57_21710 PF13335 Magnesium chelatase, subunit ChlI C-terminal BOQ57_21715 PF01553 Acyltransferase BOQ57_21720 PF01553 Acyltransferase BOQ57_21725 PF04463 Protein of unknown function (DUF523) BOQ57_21735 PF00857 Isochorismatase family BOQ57_21740 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BOQ57_21740 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BOQ57_21745 PF01323 DSBA-like thioredoxin domain BOQ57_21750 PF01636 Phosphotransferase enzyme family BOQ57_21755 PF12801 4Fe-4S binding domain BOQ57_21755 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BOQ57_21755 PF13746 4Fe-4S dicluster domain BOQ57_21760 PF06288 Protein of unknown function (DUF1040) BOQ57_21765 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_21765 PF01590 GAF domain BOQ57_21765 PF00563 EAL domain BOQ57_21765 PF00360 Phytochrome region BOQ57_21770 PF09278 MerR, DNA binding BOQ57_21770 PF00376 MerR family regulatory protein BOQ57_21775 PF00403 Heavy-metal-associated domain BOQ57_21780 PF00156 Phosphoribosyl transferase domain BOQ57_21785 PF03725 3' exoribonuclease family, domain 2 BOQ57_21785 PF01138 3' exoribonuclease family, domain 1 BOQ57_21790 PF03755 YicC-like family, N-terminal region BOQ57_21790 PF08340 Domain of unknown function (DUF1732) BOQ57_21810 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) BOQ57_21825 PF01370 NAD dependent epimerase/dehydratase family BOQ57_21830 PF08360 QacR-like protein, C-terminal region BOQ57_21830 PF00440 Bacterial regulatory proteins, tetR family BOQ57_21835 PF00155 Aminotransferase class I and II BOQ57_21840 PF08240 Alcohol dehydrogenase GroES-like domain BOQ57_21840 PF00107 Zinc-binding dehydrogenase BOQ57_21845 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BOQ57_21850 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_21850 PF03707 Bacterial signalling protein N terminal repeat BOQ57_21850 PF00563 EAL domain BOQ57_21855 PF00580 UvrD/REP helicase N-terminal domain BOQ57_21855 PF13361 UvrD-like helicase C-terminal domain BOQ57_21860 PF00266 Aminotransferase class-V BOQ57_21865 PF02657 Fe-S metabolism associated domain BOQ57_21870 PF00899 ThiF family BOQ57_21905 PF01177 Asp/Glu/Hydantoin racemase BOQ57_21910 PF00593 TonB dependent receptor BOQ57_21910 PF07715 TonB-dependent Receptor Plug Domain BOQ57_21915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_21915 PF03466 LysR substrate binding domain BOQ57_21930 PF00731 AIR carboxylase BOQ57_21935 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BOQ57_21935 PF02222 ATP-grasp domain BOQ57_21940 PF07690 Major Facilitator Superfamily BOQ57_21945 PF04397 LytTr DNA-binding domain BOQ57_21945 PF00072 Response regulator receiver domain BOQ57_21950 PF07694 5TMR of 5TMR-LYT BOQ57_21950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_21950 PF06580 Histidine kinase BOQ57_21960 PF00989 PAS fold BOQ57_21960 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_21960 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_21960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_21960 PF01627 Hpt domain BOQ57_21960 PF00072 Response regulator receiver domain BOQ57_21965 PF00072 Response regulator receiver domain BOQ57_21965 PF00196 Bacterial regulatory proteins, luxR family BOQ57_21970 PF16449 Fimbrillin MatB BOQ57_21975 PF18649 EcpB C-terminal domain BOQ57_21980 PF15976 CS1-pili formation C-terminal BOQ57_21980 PF16967 E-set like domain BOQ57_21995 PF01810 LysE type translocator BOQ57_22000 PF07690 Major Facilitator Superfamily BOQ57_22010 PF00210 Ferritin-like domain BOQ57_22015 PF08448 PAS fold BOQ57_22015 PF00990 Diguanylate cyclase, GGDEF domain BOQ57_22020 PF07055 Enoyl reductase FAD binding domain BOQ57_22020 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase BOQ57_22020 PF12241 Trans-2-enoyl-CoA reductase catalytic region BOQ57_22025 PF00582 Universal stress protein family BOQ57_22030 PF00579 tRNA synthetases class I (W and Y) BOQ57_22035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BOQ57_22035 PF03466 LysR substrate binding domain BOQ57_22050 PF00892 EamA-like transporter family BOQ57_22065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BOQ57_22075 PF00625 Guanylate kinase BOQ57_22080 PF01192 RNA polymerase Rpb6 BOQ57_22085 PF13291 ACT domain BOQ57_22085 PF04607 Region found in RelA / SpoT proteins BOQ57_22085 PF02824 TGS domain BOQ57_22090 PF12105 SpoU, rRNA methylase, C-terminal BOQ57_22090 PF00588 SpoU rRNA Methylase family BOQ57_22095 PF12146 Serine aminopeptidase, S33 BOQ57_22110 PF02954 Bacterial regulatory protein, Fis family BOQ57_22110 PF00072 Response regulator receiver domain BOQ57_22110 PF14532 Sigma-54 interaction domain BOQ57_22115 PF00672 HAMP domain BOQ57_22115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_22115 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_22125 PF07690 Major Facilitator Superfamily BOQ57_22160 PF00440 Bacterial regulatory proteins, tetR family BOQ57_22165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BOQ57_22170 PF00873 AcrB/AcrD/AcrF family BOQ57_22175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_22175 PF00497 Bacterial extracellular solute-binding proteins, family 3 BOQ57_22175 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_22180 PF07992 Pyridine nucleotide-disulphide oxidoreductase BOQ57_22180 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BOQ57_22190 PF03814 Potassium-transporting ATPase A subunit BOQ57_22200 PF02669 K+-transporting ATPase, c chain BOQ57_22205 PF00512 His Kinase A (phospho-acceptor) domain BOQ57_22205 PF13493 Domain of unknown function (DUF4118) BOQ57_22205 PF13492 GAF domain BOQ57_22205 PF02702 Osmosensitive K+ channel His kinase sensor domain BOQ57_22205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_22210 PF00486 Transcriptional regulatory protein, C terminal BOQ57_22210 PF00072 Response regulator receiver domain BOQ57_22215 PF07690 Major Facilitator Superfamily BOQ57_22230 PF00155 Aminotransferase class I and II BOQ57_22235 PF00011 Hsp20/alpha crystallin family BOQ57_22240 PF00011 Hsp20/alpha crystallin family BOQ57_22245 PF13280 WYL domain BOQ57_22245 PF08279 HTH domain BOQ57_22255 PF01751 Toprim domain BOQ57_22255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BOQ57_22255 PF18053 DNA gyrase B subunit insert domain BOQ57_22255 PF00204 DNA gyrase B BOQ57_22255 PF00986 DNA gyrase B subunit, carboxyl terminus BOQ57_22260 PF02463 RecF/RecN/SMC N terminal domain BOQ57_22265 PF02767 DNA polymerase III beta subunit, central domain BOQ57_22265 PF02768 DNA polymerase III beta subunit, C-terminal domain BOQ57_22265 PF00712 DNA polymerase III beta subunit, N-terminal domain