locus-tag class description IUJ49_00010 PF01565 FAD binding domain IUJ49_00010 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain IUJ49_00015 PF02080 TrkA-C domain IUJ49_00015 PF02254 TrkA-N domain IUJ49_00020 PF02386 Cation transport protein IUJ49_00025 PF01131 DNA topoisomerase IUJ49_00025 PF01751 Toprim domain IUJ49_00030 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ49_00035 PF01568 Molydopterin dinucleotide binding domain IUJ49_00035 PF00384 Molybdopterin oxidoreductase IUJ49_00035 PF18364 Molybdopterin oxidoreductase N-terminal domain IUJ49_00045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_00050 PF00072 Response regulator receiver domain IUJ49_00050 PF00486 Transcriptional regulatory protein, C terminal IUJ49_00065 PF01794 Ferric reductase like transmembrane component IUJ49_00070 PF00174 Oxidoreductase molybdopterin binding domain IUJ49_00075 PF06496 Protein of unknown function (DUF1097) IUJ49_00080 PF00072 Response regulator receiver domain IUJ49_00080 PF00158 Sigma-54 interaction domain IUJ49_00090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_00090 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_00110 PF00571 CBS domain IUJ49_00110 PF00478 IMP dehydrogenase / GMP reductase domain IUJ49_00115 PF10063 Uncharacterized integral membrane protein (DUF2301) IUJ49_00125 PF01037 Lrp/AsnC ligand binding domain IUJ49_00130 PF03590 Aspartate-ammonia ligase IUJ49_00140 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_00140 PF07724 AAA domain (Cdc48 subfamily) IUJ49_00140 PF17871 AAA lid domain IUJ49_00140 PF02861 Clp amino terminal domain, pathogenicity island component IUJ49_00140 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_00145 PF02578 Multi-copper polyphenol oxidoreductase laccase IUJ49_00150 PF01479 S4 domain IUJ49_00150 PF00849 RNA pseudouridylate synthase IUJ49_00155 PF13525 Outer membrane lipoprotein IUJ49_00160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ49_00160 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_00165 PF00375 Sodium:dicarboxylate symporter family IUJ49_00170 PF03313 Serine dehydratase alpha chain IUJ49_00180 PF02233 NAD(P) transhydrogenase beta subunit IUJ49_00185 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ49_00185 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ49_00185 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch IUJ49_00190 PF00465 Iron-containing alcohol dehydrogenase IUJ49_00195 PF06719 AraC-type transcriptional regulator N-terminus IUJ49_00195 PF12833 Helix-turn-helix domain IUJ49_00200 PF08212 Lipocalin-like domain IUJ49_00215 PF00350 Dynamin family IUJ49_00230 PF02666 Phosphatidylserine decarboxylase IUJ49_00250 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ49_00250 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ49_00255 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain IUJ49_00255 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain IUJ49_00260 PF02863 Arginine repressor, C-terminal domain IUJ49_00260 PF01316 Arginine repressor, DNA binding domain IUJ49_00265 PF03606 C4-dicarboxylate anaerobic carrier IUJ49_00270 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ49_00270 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ49_00275 PF00696 Amino acid kinase family IUJ49_00300 PF00672 HAMP domain IUJ49_00300 PF02743 Cache domain IUJ49_00300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_00305 PF02653 Branched-chain amino acid transport system / permease component IUJ49_00310 PF00005 ABC transporter IUJ49_00315 PF13407 Periplasmic binding protein domain IUJ49_00320 PF16353 Domain of unknown function(DUF4981) IUJ49_00320 PF00703 Glycosyl hydrolases family 2 IUJ49_00320 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IUJ49_00320 PF02929 Beta galactosidase small chain IUJ49_00320 PF02837 Glycosyl hydrolases family 2, sugar binding domain IUJ49_00325 PF00356 Bacterial regulatory proteins, lacI family IUJ49_00330 PF16363 GDP-mannose 4,6 dehydratase IUJ49_00335 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain IUJ49_00335 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain IUJ49_00340 PF10509 Galactokinase galactose-binding signature IUJ49_00340 PF00288 GHMP kinases N terminal domain IUJ49_00340 PF08544 GHMP kinases C terminal IUJ49_00345 PF01263 Aldose 1-epimerase IUJ49_00350 PF00248 Aldo/keto reductase family IUJ49_00355 PF02673 Bacitracin resistance protein BacA IUJ49_00360 PF12973 ChrR Cupin-like domain IUJ49_00365 PF04542 Sigma-70 region 2 IUJ49_00365 PF04545 Sigma-70, region 4 IUJ49_00375 PF03485 Arginyl tRNA synthetase N terminal domain IUJ49_00375 PF00750 tRNA synthetases class I (R) IUJ49_00375 PF05746 DALR anticodon binding domain IUJ49_00385 PF00227 Proteasome subunit IUJ49_00390 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_00390 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_00390 PF07724 AAA domain (Cdc48 subfamily) IUJ49_00395 PF07690 Major Facilitator Superfamily IUJ49_00400 PF03466 LysR substrate binding domain IUJ49_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_00405 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ49_00405 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_00405 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ49_00405 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ49_00405 PF04324 BFD-like [2Fe-2S] binding domain IUJ49_00410 PF13806 Rieske-like [2Fe-2S] domain IUJ49_00415 PF01226 Formate/nitrite transporter IUJ49_00420 PF14824 Sirohaem biosynthesis protein central IUJ49_00420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ49_00420 PF10414 Sirohaem synthase dimerisation region IUJ49_00425 PF00571 CBS domain IUJ49_00425 PF01769 Divalent cation transporter IUJ49_00425 PF03448 MgtE intracellular N domain IUJ49_00430 PF00672 HAMP domain IUJ49_00430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_00435 PF03737 Aldolase/RraA IUJ49_00440 PF02592 Putative vitamin uptake transporter IUJ49_00450 PF02696 Uncharacterized ACR, YdiU/UPF0061 family IUJ49_00455 PF00034 Cytochrome c IUJ49_00460 PF00270 DEAD/DEAH box helicase IUJ49_00460 PF00271 Helicase conserved C-terminal domain IUJ49_00460 PF00570 HRDC domain IUJ49_00460 PF16124 RecQ zinc-binding IUJ49_00460 PF09382 RQC domain IUJ49_00465 PF03061 Thioesterase superfamily IUJ49_00480 PF03473 MOSC domain IUJ49_00480 PF03475 3-alpha domain IUJ49_00485 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_00490 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_00495 PF08402 TOBE domain IUJ49_00495 PF00005 ABC transporter IUJ49_00500 PF13416 Bacterial extracellular solute-binding protein IUJ49_00505 PF13416 Bacterial extracellular solute-binding protein IUJ49_00510 PF00202 Aminotransferase class-III IUJ49_00515 PF00120 Glutamine synthetase, catalytic domain IUJ49_00520 PF01258 Prokaryotic dksA/traR C4-type zinc finger IUJ49_00535 PF05981 CreA protein IUJ49_00540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ49_00540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_00545 PF00012 Hsp70 protein IUJ49_00560 PF00128 Alpha amylase, catalytic domain IUJ49_00560 PF02903 Alpha amylase, N-terminal ig-like domain IUJ49_00565 PF02719 Polysaccharide biosynthesis protein IUJ49_00570 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ49_00590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ49_00595 PF00535 Glycosyl transferase family 2 IUJ49_00600 PF00535 Glycosyl transferase family 2 IUJ49_00610 PF01501 Glycosyl transferase family 8 IUJ49_00615 PF00535 Glycosyl transferase family 2 IUJ49_00630 PF13193 AMP-binding enzyme C-terminal domain IUJ49_00630 PF00501 AMP-binding enzyme IUJ49_00650 PF02348 Cytidylyltransferase IUJ49_00660 PF03102 NeuB family IUJ49_00660 PF08666 SAF domain IUJ49_00680 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ49_00685 PF00072 Response regulator receiver domain IUJ49_00685 PF00486 Transcriptional regulatory protein, C terminal IUJ49_00690 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_00690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_00690 PF00672 HAMP domain IUJ49_00700 PF03949 Malic enzyme, NAD binding domain IUJ49_00700 PF00390 Malic enzyme, N-terminal domain IUJ49_00705 PF11066 Protein of unknown function (DUF2867) IUJ49_00705 PF13460 NAD(P)H-binding IUJ49_00710 PF01197 Ribosomal protein L31 IUJ49_00715 PF00270 DEAD/DEAH box helicase IUJ49_00715 PF17764 3′ DNA-binding domain (3′BD) IUJ49_00715 PF18074 Primosomal protein N C-terminal domain IUJ49_00715 PF18319 PriA DNA helicase Cys-rich region (CRR) domain IUJ49_00715 PF00271 Helicase conserved C-terminal domain IUJ49_00725 PF00691 OmpA family IUJ49_00725 PF01389 OmpA-like transmembrane domain IUJ49_00730 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_00730 PF00585 C-terminal regulatory domain of Threonine dehydratase IUJ49_00735 PF00920 Dehydratase family IUJ49_00740 PF01063 Amino-transferase class IV IUJ49_00750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_00750 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ49_00750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ49_00755 PF01078 Magnesium chelatase, subunit ChlI IUJ49_00755 PF13335 Magnesium chelatase, subunit ChlI C-terminal IUJ49_00760 PF01553 Acyltransferase IUJ49_00765 PF01553 Acyltransferase IUJ49_00770 PF04463 Protein of unknown function (DUF523) IUJ49_00780 PF00857 Isochorismatase family IUJ49_00785 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family IUJ49_00785 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain IUJ49_00795 PF00005 ABC transporter IUJ49_00800 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_00805 PF01323 DSBA-like thioredoxin domain IUJ49_00810 PF01636 Phosphotransferase enzyme family IUJ49_00815 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase IUJ49_00815 PF12801 4Fe-4S binding domain IUJ49_00815 PF13746 4Fe-4S dicluster domain IUJ49_00820 PF06288 Protein of unknown function (DUF1040) IUJ49_00825 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_00825 PF01590 GAF domain IUJ49_00825 PF00563 EAL domain IUJ49_00825 PF00360 Phytochrome region IUJ49_00830 PF00376 MerR family regulatory protein IUJ49_00830 PF09278 MerR, DNA binding IUJ49_00835 PF00403 Heavy-metal-associated domain IUJ49_00840 PF00156 Phosphoribosyl transferase domain IUJ49_00845 PF01138 3' exoribonuclease family, domain 1 IUJ49_00845 PF03725 3' exoribonuclease family, domain 2 IUJ49_00850 PF08340 Domain of unknown function (DUF1732) IUJ49_00850 PF03755 YicC-like family, N-terminal region IUJ49_00870 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) IUJ49_00885 PF01370 NAD dependent epimerase/dehydratase family IUJ49_00890 PF00440 Bacterial regulatory proteins, tetR family IUJ49_00890 PF08360 QacR-like protein, C-terminal region IUJ49_00895 PF00155 Aminotransferase class I and II IUJ49_00900 PF00107 Zinc-binding dehydrogenase IUJ49_00900 PF08240 Alcohol dehydrogenase GroES-like domain IUJ49_00905 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ49_00910 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_00910 PF00563 EAL domain IUJ49_00910 PF03707 Bacterial signalling protein N terminal repeat IUJ49_00915 PF00580 UvrD/REP helicase N-terminal domain IUJ49_00915 PF13361 UvrD-like helicase C-terminal domain IUJ49_00920 PF00266 Aminotransferase class-V IUJ49_00925 PF02657 Fe-S metabolism associated domain IUJ49_00930 PF00899 ThiF family IUJ49_00960 PF12724 Flavodoxin domain IUJ49_00965 PF02386 Cation transport protein IUJ49_00970 PF09186 Domain of unknown function (DUF1949) IUJ49_00970 PF01205 Uncharacterized protein family UPF0029 IUJ49_00975 PF00557 Metallopeptidase family M24 IUJ49_00980 PF00501 AMP-binding enzyme IUJ49_00980 PF13193 AMP-binding enzyme C-terminal domain IUJ49_00985 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ49_00985 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ49_00985 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_00990 PF02803 Thiolase, C-terminal domain IUJ49_00990 PF00108 Thiolase, N-terminal domain IUJ49_00995 PF00072 Response regulator receiver domain IUJ49_00995 PF00486 Transcriptional regulatory protein, C terminal IUJ49_01000 PF00672 HAMP domain IUJ49_01000 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01005 PF01547 Bacterial extracellular solute-binding protein IUJ49_01015 PF01206 Sulfurtransferase TusA IUJ49_01020 PF01042 Endoribonuclease L-PSP IUJ49_01025 PF13488 Glycine zipper IUJ49_01025 PF00691 OmpA family IUJ49_01030 PF00857 Isochorismatase family IUJ49_01035 PF03352 Methyladenine glycosylase IUJ49_01040 PF02091 Glycyl-tRNA synthetase alpha subunit IUJ49_01045 PF05746 DALR anticodon binding domain IUJ49_01045 PF02092 Glycyl-tRNA synthetase beta subunit IUJ49_01070 PF03496 ADP-ribosyltransferase exoenzyme IUJ49_01070 PF03545 Yersinia virulence determinant (YopE) IUJ49_01075 PF05932 Tir chaperone protein (CesT) family IUJ49_01085 PF03222 Tryptophan/tyrosine permease family IUJ49_01090 PF12801 4Fe-4S binding domain IUJ49_01100 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_01100 PF18113 Rubredoxin binding C-terminal domain IUJ49_01105 PF00753 Metallo-beta-lactamase superfamily IUJ49_01105 PF00258 Flavodoxin IUJ49_01105 PF00301 Rubredoxin IUJ49_01110 PF01590 GAF domain IUJ49_01110 PF00158 Sigma-54 interaction domain IUJ49_01115 PF00356 Bacterial regulatory proteins, lacI family IUJ49_01120 PF13458 Periplasmic binding protein IUJ49_01125 PF02653 Branched-chain amino acid transport system / permease component IUJ49_01130 PF02653 Branched-chain amino acid transport system / permease component IUJ49_01130 PF11862 Domain of unknown function (DUF3382) IUJ49_01135 PF00005 ABC transporter IUJ49_01135 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ49_01140 PF00005 ABC transporter IUJ49_01155 PF00581 Rhodanese-like domain IUJ49_01160 PF01694 Rhomboid family IUJ49_01160 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease IUJ49_01165 PF12262 Bacterial virulence factor lipase N-terminal IUJ49_01170 PF04380 Membrane fusogenic activity IUJ49_01175 PF00175 Oxidoreductase NAD-binding domain IUJ49_01180 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase IUJ49_01190 PF07497 Rho termination factor, RNA-binding domain IUJ49_01190 PF07498 Rho termination factor, N-terminal domain IUJ49_01190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_01195 PF00085 Thioredoxin IUJ49_01200 PF00271 Helicase conserved C-terminal domain IUJ49_01200 PF00270 DEAD/DEAH box helicase IUJ49_01205 PF02541 Ppx/GppA phosphatase family IUJ49_01220 PF04445 Putative SAM-dependent methyltransferase IUJ49_01225 PF03707 Bacterial signalling protein N terminal repeat IUJ49_01225 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_01225 PF00563 EAL domain IUJ49_01230 PF01432 Peptidase family M3 IUJ49_01235 PF00490 Delta-aminolevulinic acid dehydratase IUJ49_01240 PF01026 TatD related DNase IUJ49_01245 PF00902 Sec-independent protein translocase protein (TatC) IUJ49_01250 PF02416 mttA/Hcf106 family IUJ49_01255 PF02416 mttA/Hcf106 family IUJ49_01260 PF03109 ABC1 family IUJ49_01265 PF02036 SCP-2 sterol transfer family IUJ49_01270 PF01209 ubiE/COQ5 methyltransferase family IUJ49_01275 PF02537 CrcB-like protein, Camphor Resistance (CrcB) IUJ49_01280 PF07969 Amidohydrolase family IUJ49_01320 PF03544 Gram-negative bacterial TonB protein C-terminal IUJ49_01325 PF02472 Biopolymer transport protein ExbD/TolR IUJ49_01330 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_01335 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_01345 PF03472 Autoinducer binding domain IUJ49_01345 PF00196 Bacterial regulatory proteins, luxR family IUJ49_01350 PF01380 SIS domain IUJ49_01355 PF00455 DeoR C terminal sensor domain IUJ49_01355 PF08220 DeoR-like helix-turn-helix domain IUJ49_01360 PF00072 Response regulator receiver domain IUJ49_01360 PF00486 Transcriptional regulatory protein, C terminal IUJ49_01365 PF00672 HAMP domain IUJ49_01365 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_01365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01370 PF00905 Penicillin binding protein transpeptidase domain IUJ49_01375 PF06123 Inner membrane protein CreD IUJ49_01380 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_01380 PF14602 Hexapeptide repeat of succinyl-transferase IUJ49_01380 PF12804 MobA-like NTP transferase domain IUJ49_01385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain IUJ49_01385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain IUJ49_01390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_01390 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ49_01395 PF00231 ATP synthase IUJ49_01400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_01400 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ49_01400 PF00306 ATP synthase alpha/beta chain, C terminal domain IUJ49_01405 PF00213 ATP synthase delta (OSCP) subunit IUJ49_01410 PF00430 ATP synthase B/B' CF(0) IUJ49_01415 PF00137 ATP synthase subunit C IUJ49_01420 PF00119 ATP synthase A chain IUJ49_01430 PF17762 HTH domain found in ParB protein IUJ49_01430 PF02195 ParB-like nuclease domain IUJ49_01435 PF13614 AAA domain IUJ49_01440 PF02527 rRNA small subunit methyltransferase G IUJ49_01445 PF01134 Glucose inhibited division protein A IUJ49_01445 PF13932 GidA associated domain IUJ49_01450 PF00258 Flavodoxin IUJ49_01455 PF07715 TonB-dependent Receptor Plug Domain IUJ49_01455 PF00593 TonB dependent receptor IUJ49_01460 PF00005 ABC transporter IUJ49_01465 PF00005 ABC transporter IUJ49_01475 PF01032 FecCD transport family IUJ49_01480 PF10396 GTP-binding protein TrmE N-terminus IUJ49_01480 PF01926 50S ribosome-binding GTPase IUJ49_01480 PF12631 MnmE helical domain IUJ49_01485 PF02096 60Kd inner membrane protein IUJ49_01485 PF14849 YidC periplasmic domain IUJ49_01490 PF01809 Putative membrane protein insertion efficiency factor IUJ49_01495 PF00825 Ribonuclease P IUJ49_01500 PF00468 Ribosomal protein L34 IUJ49_01505 PF00005 ABC transporter IUJ49_01510 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_01515 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_01520 PF00308 Bacterial dnaA protein IUJ49_01520 PF11638 DnaA N-terminal domain IUJ49_01520 PF08299 Bacterial dnaA protein helix-turn-helix IUJ49_01525 PF02768 DNA polymerase III beta subunit, C-terminal domain IUJ49_01525 PF02767 DNA polymerase III beta subunit, central domain IUJ49_01525 PF00712 DNA polymerase III beta subunit, N-terminal domain IUJ49_01530 PF02463 RecF/RecN/SMC N terminal domain IUJ49_01535 PF01751 Toprim domain IUJ49_01535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01535 PF18053 DNA gyrase B subunit insert domain IUJ49_01535 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ49_01535 PF00204 DNA gyrase B IUJ49_01545 PF08279 HTH domain IUJ49_01545 PF13280 WYL domain IUJ49_01550 PF00011 Hsp20/alpha crystallin family IUJ49_01555 PF00011 Hsp20/alpha crystallin family IUJ49_01560 PF00155 Aminotransferase class I and II IUJ49_01575 PF07690 Major Facilitator Superfamily IUJ49_01580 PF00072 Response regulator receiver domain IUJ49_01580 PF00486 Transcriptional regulatory protein, C terminal IUJ49_01585 PF13493 Domain of unknown function (DUF4118) IUJ49_01585 PF13492 GAF domain IUJ49_01585 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_01585 PF02702 Osmosensitive K+ channel His kinase sensor domain IUJ49_01585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01590 PF02669 K+-transporting ATPase, c chain IUJ49_01600 PF03814 Potassium-transporting ATPase A subunit IUJ49_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_01605 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ49_01610 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_01610 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_01610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01615 PF00873 AcrB/AcrD/AcrF family IUJ49_01620 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_01625 PF00440 Bacterial regulatory proteins, tetR family IUJ49_01660 PF12146 Serine aminopeptidase, S33 IUJ49_01665 PF12105 SpoU, rRNA methylase, C-terminal IUJ49_01665 PF00588 SpoU rRNA Methylase family IUJ49_01670 PF13291 ACT domain IUJ49_01670 PF04607 Region found in RelA / SpoT proteins IUJ49_01670 PF02824 TGS domain IUJ49_01675 PF01192 RNA polymerase Rpb6 IUJ49_01680 PF00625 Guanylate kinase IUJ49_01685 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ49_01700 PF00892 EamA-like transporter family IUJ49_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_01720 PF03466 LysR substrate binding domain IUJ49_01725 PF00579 tRNA synthetases class I (W and Y) IUJ49_01730 PF00582 Universal stress protein family IUJ49_01735 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUJ49_01735 PF07055 Enoyl reductase FAD binding domain IUJ49_01735 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUJ49_01740 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_01745 PF00210 Ferritin-like domain IUJ49_01755 PF07690 Major Facilitator Superfamily IUJ49_01760 PF01810 LysE type translocator IUJ49_01775 PF15976 CS1-pili formation C-terminal IUJ49_01775 PF16967 E-set like domain IUJ49_01780 PF18649 EcpB C-terminal domain IUJ49_01785 PF16449 Fimbrillin MatB IUJ49_01790 PF00196 Bacterial regulatory proteins, luxR family IUJ49_01790 PF00072 Response regulator receiver domain IUJ49_01795 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_01795 PF00989 PAS fold IUJ49_01795 PF00072 Response regulator receiver domain IUJ49_01795 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01795 PF01627 Hpt domain IUJ49_01805 PF07694 5TMR of 5TMR-LYT IUJ49_01805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_01805 PF06580 Histidine kinase IUJ49_01810 PF04397 LytTr DNA-binding domain IUJ49_01810 PF00072 Response regulator receiver domain IUJ49_01815 PF07690 Major Facilitator Superfamily IUJ49_01820 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain IUJ49_01820 PF02222 ATP-grasp domain IUJ49_01825 PF00731 AIR carboxylase IUJ49_01840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_01840 PF03466 LysR substrate binding domain IUJ49_01845 PF00593 TonB dependent receptor IUJ49_01845 PF07715 TonB-dependent Receptor Plug Domain IUJ49_01850 PF01177 Asp/Glu/Hydantoin racemase IUJ49_01885 PF13380 CoA binding domain IUJ49_01885 PF00583 Acetyltransferase (GNAT) family IUJ49_01885 PF13607 Succinyl-CoA ligase like flavodoxin domain IUJ49_01900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_01900 PF03466 LysR substrate binding domain IUJ49_01905 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain IUJ49_01905 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain IUJ49_01910 PF00342 Phosphoglucose isomerase IUJ49_01920 PF05552 Conserved TM helix IUJ49_01920 PF00924 Mechanosensitive ion channel IUJ49_01925 PF00440 Bacterial regulatory proteins, tetR family IUJ49_01930 PF00692 dUTPase IUJ49_01935 PF02441 Flavoprotein IUJ49_01935 PF04127 DNA / pantothenate metabolism flavoprotein IUJ49_01940 PF04002 RadC-like JAB domain IUJ49_01945 PF00830 Ribosomal L28 family IUJ49_01950 PF00471 Ribosomal protein L33 IUJ49_01960 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain IUJ49_01960 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain IUJ49_01960 PF06827 Zinc finger found in FPG and IleRS IUJ49_01965 PF04393 Protein of unknown function (DUF535) IUJ49_01970 PF01467 Cytidylyltransferase-like IUJ49_01975 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ49_01980 PF00535 Glycosyl transferase family 2 IUJ49_01985 PF01075 Glycosyltransferase family 9 (heptosyltransferase) IUJ49_01990 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) IUJ49_01995 PF03611 PTS system sugar-specific permease component IUJ49_02005 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_02010 PF00356 Bacterial regulatory proteins, lacI family IUJ49_02010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_02015 PF00107 Zinc-binding dehydrogenase IUJ49_02015 PF08240 Alcohol dehydrogenase GroES-like domain IUJ49_02030 PF03748 Flagellar basal body-associated protein FliL IUJ49_02035 PF04345 Chorismate lyase IUJ49_02040 PF01040 UbiA prenyltransferase family IUJ49_02045 PF01553 Acyltransferase IUJ49_02050 PF01726 LexA DNA binding domain IUJ49_02050 PF00717 Peptidase S24-like IUJ49_02060 PF02630 SCO1/SenC IUJ49_02065 PF01554 MatE IUJ49_02070 PF00588 SpoU rRNA Methylase family IUJ49_02075 PF16527 Two-component sensor protein CpxA, periplasmic domain IUJ49_02075 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_02075 PF00672 HAMP domain IUJ49_02075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_02080 PF00072 Response regulator receiver domain IUJ49_02080 PF00486 Transcriptional regulatory protein, C terminal IUJ49_02085 PF01545 Cation efflux family IUJ49_02085 PF16916 Dimerisation domain of Zinc Transporter IUJ49_02090 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_02090 PF06426 Serine acetyltransferase, N-terminal IUJ49_02100 PF06005 Cell division protein ZapB IUJ49_02110 PF01367 5'-3' exonuclease, C-terminal SAM fold IUJ49_02110 PF01612 3'-5' exonuclease IUJ49_02110 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUJ49_02110 PF00476 DNA polymerase family A IUJ49_02115 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_02150 PF00356 Bacterial regulatory proteins, lacI family IUJ49_02155 PF02929 Beta galactosidase small chain IUJ49_02155 PF16353 Domain of unknown function(DUF4981) IUJ49_02155 PF00703 Glycosyl hydrolases family 2 IUJ49_02155 PF02836 Glycosyl hydrolases family 2, TIM barrel domain IUJ49_02155 PF02837 Glycosyl hydrolases family 2, sugar binding domain IUJ49_02160 PF04074 YhcH/YjgK/YiaL IUJ49_02165 PF13520 Amino acid permease IUJ49_02170 PF01588 Putative tRNA binding domain IUJ49_02175 PF13520 Amino acid permease IUJ49_02180 PF13593 SBF-like CPA transporter family (DUF4137) IUJ49_02185 PF12867 DinB superfamily IUJ49_02185 PF03781 Sulfatase-modifying factor enzyme 1 IUJ49_02195 PF00756 Putative esterase IUJ49_02200 PF08240 Alcohol dehydrogenase GroES-like domain IUJ49_02200 PF00107 Zinc-binding dehydrogenase IUJ49_02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_02205 PF03466 LysR substrate binding domain IUJ49_02210 PF02653 Branched-chain amino acid transport system / permease component IUJ49_02215 PF02653 Branched-chain amino acid transport system / permease component IUJ49_02220 PF00005 ABC transporter IUJ49_02225 PF02608 ABC transporter substrate-binding protein PnrA-like IUJ49_02230 PF00580 UvrD/REP helicase N-terminal domain IUJ49_02230 PF13361 UvrD-like helicase C-terminal domain IUJ49_02235 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) IUJ49_02250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_02250 PF03466 LysR substrate binding domain IUJ49_02270 PF14001 YdfZ protein IUJ49_02295 PF06206 CpeT/CpcT family (DUF1001) IUJ49_02305 PF01810 LysE type translocator IUJ49_02310 PF04143 Sulphur transport IUJ49_02315 PF00689 Cation transporting ATPase, C-terminus IUJ49_02315 PF00690 Cation transporter/ATPase, N-terminus IUJ49_02320 PF01810 LysE type translocator IUJ49_02325 PF12833 Helix-turn-helix domain IUJ49_02330 PF00892 EamA-like transporter family IUJ49_02340 PF00171 Aldehyde dehydrogenase family IUJ49_02345 PF07883 Cupin domain IUJ49_02345 PF01381 Helix-turn-helix IUJ49_02350 PF00202 Aminotransferase class-III IUJ49_02355 PF00171 Aldehyde dehydrogenase family IUJ49_02360 PF00117 Glutamine amidotransferase class-I IUJ49_02360 PF00958 GMP synthase C terminal domain IUJ49_02360 PF02540 NAD synthase IUJ49_02365 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ49_02365 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ49_02370 PF00294 pfkB family carbohydrate kinase IUJ49_02375 PF02082 Transcriptional regulator IUJ49_02390 PF02646 RmuC family IUJ49_02395 PF02386 Cation transport protein IUJ49_02400 PF02254 TrkA-N domain IUJ49_02400 PF02080 TrkA-C domain IUJ49_02405 PF01189 16S rRNA methyltransferase RsmB/F IUJ49_02405 PF01029 NusB family IUJ49_02410 PF00551 Formyl transferase IUJ49_02410 PF02911 Formyl transferase, C-terminal domain IUJ49_02415 PF01327 Polypeptide deformylase IUJ49_02425 PF17782 DprA winged helix domain IUJ49_02425 PF02481 DNA recombination-mediator protein A IUJ49_02430 PF04361 Protein of unknown function (DUF494) IUJ49_02435 PF01396 Topoisomerase DNA binding C4 zinc finger IUJ49_02440 PF00731 AIR carboxylase IUJ49_02445 PF01300 Telomere recombination IUJ49_02450 PF01218 Coproporphyrinogen III oxidase IUJ49_02455 PF01488 Shikimate / quinate 5-dehydrogenase IUJ49_02455 PF08501 Shikimate dehydrogenase substrate binding domain IUJ49_02455 PF18317 Shikimate 5'-dehydrogenase C-terminal domain IUJ49_02460 PF07369 Protein of unknown function (DUF1488) IUJ49_02465 PF01926 50S ribosome-binding GTPase IUJ49_02470 PF00034 Cytochrome c IUJ49_02475 PF04220 Der GTPase activator (YihI) IUJ49_02480 PF10675 Protein of unknown function (DUF2489) IUJ49_02485 PF06969 HemN C-terminal domain IUJ49_02485 PF04055 Radical SAM superfamily IUJ49_02490 PF00962 Adenosine/AMP deaminase IUJ49_02495 PF00158 Sigma-54 interaction domain IUJ49_02495 PF00072 Response regulator receiver domain IUJ49_02495 PF02954 Bacterial regulatory protein, Fis family IUJ49_02500 PF00989 PAS fold IUJ49_02500 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_02500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_02510 PF03951 Glutamine synthetase, beta-Grasp domain IUJ49_02510 PF00120 Glutamine synthetase, catalytic domain IUJ49_02515 PF03144 Elongation factor Tu domain 2 IUJ49_02515 PF00009 Elongation factor Tu GTP binding domain IUJ49_02515 PF00679 Elongation factor G C-terminus IUJ49_02520 PF03631 Virulence factor BrkB IUJ49_02525 PF02580 D-Tyr-tRNA(Tyr) deacylase IUJ49_02535 PF09500 Putative thioesterase (yiiD_Cterm) IUJ49_02535 PF00583 Acetyltransferase (GNAT) family IUJ49_02545 PF00270 DEAD/DEAH box helicase IUJ49_02545 PF17191 RecG wedge domain IUJ49_02545 PF00271 Helicase conserved C-terminal domain IUJ49_02550 PF13091 PLD-like domain IUJ49_02555 PF02447 GntP family permease IUJ49_02560 PF01202 Shikimate kinase IUJ49_02565 PF00920 Dehydratase family IUJ49_02570 PF01081 KDPG and KHG aldolase IUJ49_02575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_02575 PF00356 Bacterial regulatory proteins, lacI family IUJ49_02585 PF01551 Peptidase family M23 IUJ49_02590 PF06415 BPG-independent PGAM N-terminus (iPGM_N) IUJ49_02590 PF01676 Metalloenzyme superfamily IUJ49_02595 PF00581 Rhodanese-like domain IUJ49_02600 PF02556 Preprotein translocase subunit SecB IUJ49_02605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus IUJ49_02605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus IUJ49_02610 PF01521 Iron-sulphur cluster biosynthesis IUJ49_02610 PF01106 NifU-like domain IUJ49_02615 PF00156 Phosphoribosyl transferase domain IUJ49_02620 PF00561 alpha/beta hydrolase fold IUJ49_02640 PF16921 Tex protein YqgF-like domain IUJ49_02640 PF00575 S1 RNA binding domain IUJ49_02640 PF17674 HHH domain IUJ49_02640 PF09371 Tex-like protein N-terminal domain IUJ49_02645 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ49_02645 PF03449 Transcription elongation factor, N-terminal IUJ49_02650 PF00072 Response regulator receiver domain IUJ49_02650 PF00486 Transcriptional regulatory protein, C terminal IUJ49_02655 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_02655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_02655 PF00672 HAMP domain IUJ49_02665 PF00338 Ribosomal protein S10p/S20e IUJ49_02670 PF00297 Ribosomal protein L3 IUJ49_02675 PF00573 Ribosomal protein L4/L1 family IUJ49_02680 PF00276 Ribosomal protein L23 IUJ49_02685 PF03947 Ribosomal Proteins L2, C-terminal domain IUJ49_02685 PF00181 Ribosomal Proteins L2, RNA binding domain IUJ49_02690 PF00203 Ribosomal protein S19 IUJ49_02695 PF00237 Ribosomal protein L22p/L17e IUJ49_02700 PF00189 Ribosomal protein S3, C-terminal domain IUJ49_02700 PF07650 KH domain IUJ49_02705 PF00252 Ribosomal protein L16p/L10e IUJ49_02710 PF00831 Ribosomal L29 protein IUJ49_02715 PF00366 Ribosomal protein S17 IUJ49_02720 PF00238 Ribosomal protein L14p/L23e IUJ49_02725 PF00467 KOW motif IUJ49_02725 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 IUJ49_02730 PF00673 ribosomal L5P family C-terminus IUJ49_02730 PF00281 Ribosomal protein L5 IUJ49_02735 PF00253 Ribosomal protein S14p/S29e IUJ49_02740 PF00410 Ribosomal protein S8 IUJ49_02745 PF00347 Ribosomal protein L6 IUJ49_02750 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast IUJ49_02755 PF00333 Ribosomal protein S5, N-terminal domain IUJ49_02755 PF03719 Ribosomal protein S5, C-terminal domain IUJ49_02760 PF00327 Ribosomal protein L30p/L7e IUJ49_02765 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A IUJ49_02770 PF00344 SecY translocase IUJ49_02775 PF00444 Ribosomal protein L36 IUJ49_02780 PF00416 Ribosomal protein S13/S18 IUJ49_02785 PF00411 Ribosomal protein S11 IUJ49_02790 PF00163 Ribosomal protein S4/S9 N-terminal domain IUJ49_02790 PF01479 S4 domain IUJ49_02795 PF01000 RNA polymerase Rpb3/RpoA insert domain IUJ49_02795 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain IUJ49_02795 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain IUJ49_02800 PF01196 Ribosomal protein L17 IUJ49_02850 PF02254 TrkA-N domain IUJ49_02850 PF00999 Sodium/hydrogen exchanger family IUJ49_02855 PF02525 Flavodoxin-like fold IUJ49_02860 PF03466 LysR substrate binding domain IUJ49_02860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_02865 PF00106 short chain dehydrogenase IUJ49_02880 PF00326 Prolyl oligopeptidase family IUJ49_02880 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IUJ49_02900 PF07947 YhhN family IUJ49_02905 PF07690 Major Facilitator Superfamily IUJ49_02910 PF13533 Biotin-lipoyl like IUJ49_02915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_02915 PF03466 LysR substrate binding domain IUJ49_02925 PF00375 Sodium:dicarboxylate symporter family IUJ49_02930 PF10678 Protein of unknown function (DUF2492) IUJ49_02935 PF01914 MarC family integral membrane protein IUJ49_02940 PF03466 LysR substrate binding domain IUJ49_02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_02945 PF02416 mttA/Hcf106 family IUJ49_02955 PF01464 Transglycosylase SLT domain IUJ49_02965 PF13091 PLD-like domain IUJ49_02975 PF00440 Bacterial regulatory proteins, tetR family IUJ49_02980 PF07226 Protein of unknown function (DUF1422) IUJ49_02995 PF00448 SRP54-type protein, GTPase domain IUJ49_02995 PF02881 SRP54-type protein, helical bundle domain IUJ49_03000 PF00005 ABC transporter IUJ49_03005 PF18075 FtsX extracellular domain IUJ49_03010 PF00140 Sigma-70 factor, region 1.2 IUJ49_03010 PF04542 Sigma-70 region 2 IUJ49_03010 PF04545 Sigma-70, region 4 IUJ49_03015 PF00484 Carbonic anhydrase IUJ49_03020 PF00392 Bacterial regulatory proteins, gntR family IUJ49_03020 PF07702 UTRA domain IUJ49_03025 PF01979 Amidohydrolase family IUJ49_03030 PF00491 Arginase family IUJ49_03035 PF17391 Urocanase N-terminal domain IUJ49_03035 PF01175 Urocanase Rossmann-like domain IUJ49_03035 PF17392 Urocanase C-terminal domain IUJ49_03040 PF00221 Aromatic amino acid lyase IUJ49_03045 PF01699 Sodium/calcium exchanger protein IUJ49_03050 PF00563 EAL domain IUJ49_03050 PF12792 CSS motif domain associated with EAL IUJ49_03055 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_03055 PF17157 Gammaproteobacterial periplasmic sensor domain IUJ49_03055 PF00563 EAL domain IUJ49_03085 PF03958 Bacterial type II/III secretion system short domain IUJ49_03085 PF00263 Bacterial type II and III secretion system protein IUJ49_03100 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUJ49_03100 PF00437 Type II/IV secretion system protein IUJ49_03105 PF00482 Type II secretion system (T2SS), protein F IUJ49_03115 PF07963 Prokaryotic N-terminal methylation motif IUJ49_03125 PF07963 Prokaryotic N-terminal methylation motif IUJ49_03125 PF14245 Type IV pilin PilA IUJ49_03155 PF04085 rod shape-determining protein MreC IUJ49_03160 PF04093 rod shape-determining protein MreD IUJ49_03165 PF02545 Maf-like protein IUJ49_03170 PF10150 Ribonuclease E/G family IUJ49_03170 PF00575 S1 RNA binding domain IUJ49_03175 PF13502 AsmA-like C-terminal region IUJ49_03175 PF13116 Protein of unknown function IUJ49_03185 PF00795 Carbon-nitrogen hydrolase IUJ49_03190 PF01523 Putative modulator of DNA gyrase IUJ49_03195 PF01380 SIS domain IUJ49_03195 PF01418 Helix-turn-helix domain, rpiR family IUJ49_03210 PF00367 phosphotransferase system, EIIB IUJ49_03210 PF02378 Phosphotransferase system, EIIC IUJ49_03215 PF13580 SIS domain IUJ49_03230 PF01914 MarC family integral membrane protein IUJ49_03235 PF07690 Major Facilitator Superfamily IUJ49_03245 PF00072 Response regulator receiver domain IUJ49_03250 PF00672 HAMP domain IUJ49_03250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_03250 PF00072 Response regulator receiver domain IUJ49_03250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ49_03250 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_03250 PF01627 Hpt domain IUJ49_03255 PF13581 Histidine kinase-like ATPase domain IUJ49_03260 PF08678 Rsbr N terminal IUJ49_03260 PF01740 STAS domain IUJ49_03265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_03265 PF08447 PAS fold IUJ49_03265 PF13426 PAS domain IUJ49_03280 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) IUJ49_03285 PF04228 Putative neutral zinc metallopeptidase IUJ49_03295 PF08668 HDOD domain IUJ49_03310 PF00999 Sodium/hydrogen exchanger family IUJ49_03315 PF02310 B12 binding domain IUJ49_03315 PF02607 B12 binding domain IUJ49_03315 PF02965 Vitamin B12 dependent methionine synthase, activation domain IUJ49_03315 PF00809 Pterin binding enzyme IUJ49_03315 PF02574 Homocysteine S-methyltransferase IUJ49_03320 PF18030 RimK PreATP-grasp domain IUJ49_03320 PF08443 RimK-like ATP-grasp domain IUJ49_03325 PF05525 Branched-chain amino acid transport protein IUJ49_03330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_03335 PF00486 Transcriptional regulatory protein, C terminal IUJ49_03335 PF00072 Response regulator receiver domain IUJ49_03350 PF17425 Arylsulfotransferase Ig-like domain IUJ49_03350 PF05935 Arylsulfotransferase (ASST) IUJ49_03355 PF13667 ThiC-associated domain IUJ49_03355 PF01964 Radical SAM ThiC family IUJ49_03360 PF02581 Thiamine monophosphate synthase IUJ49_03365 PF00899 ThiF family IUJ49_03375 PF05690 Thiazole biosynthesis protein ThiG IUJ49_03380 PF04055 Radical SAM superfamily IUJ49_03380 PF06968 Biotin and Thiamin Synthesis associated domain IUJ49_03390 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_03395 PF13036 Peptidoglycan-synthase activator LpoB IUJ49_03410 PF17151 Periplasmic sensor domain IUJ49_03410 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_03420 PF06055 Exopolysaccharide synthesis, ExoD IUJ49_03435 PF08803 Putative mono-oxygenase ydhR IUJ49_03465 PF00593 TonB dependent receptor IUJ49_03465 PF07715 TonB-dependent Receptor Plug Domain IUJ49_03480 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded IUJ49_03485 PF03692 Putative zinc- or iron-chelating domain IUJ49_03495 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase IUJ49_03500 PF02602 Uroporphyrinogen-III synthase HemD IUJ49_03505 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain IUJ49_03505 PF03900 Porphobilinogen deaminase, C-terminal domain IUJ49_03510 PF12633 Adenylate cyclase NT domain IUJ49_03510 PF01295 Adenylate cyclase, class-I IUJ49_03515 PF02230 Phospholipase/Carboxylesterase IUJ49_03520 PF01491 Frataxin-like domain IUJ49_03530 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ49_03530 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ49_03535 PF01678 Diaminopimelate epimerase IUJ49_03545 PF00589 Phage integrase family IUJ49_03545 PF02899 Phage integrase, N-terminal SAM-like domain IUJ49_03550 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_03560 PF13545 Crp-like helix-turn-helix domain IUJ49_03560 PF00027 Cyclic nucleotide-binding domain IUJ49_03570 PF07722 Peptidase C26 IUJ49_03590 PF00005 ABC transporter IUJ49_03600 PF02464 Competence-damaged protein IUJ49_03600 PF00994 Probable molybdopterin binding domain IUJ49_03605 PF12072 Domain of unknown function (DUF3552) IUJ49_03605 PF01966 HD domain IUJ49_03605 PF00013 KH domain IUJ49_03610 PF04204 Homoserine O-succinyltransferase IUJ49_03620 PF01037 Lrp/AsnC ligand binding domain IUJ49_03625 PF00884 Sulfatase IUJ49_03640 PF02903 Alpha amylase, N-terminal ig-like domain IUJ49_03640 PF16657 Maltogenic Amylase, C-terminal domain IUJ49_03640 PF00128 Alpha amylase, catalytic domain IUJ49_03645 PF02308 MgtC family IUJ49_03665 PF00106 short chain dehydrogenase IUJ49_03670 PF03577 Peptidase family C69 IUJ49_03685 PF00465 Iron-containing alcohol dehydrogenase IUJ49_03695 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ49_03705 PF12793 Sugar transport-related sRNA regulator N-term IUJ49_03705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_03720 PF03280 Proteobacterial lipase chaperone protein IUJ49_03725 PF00561 alpha/beta hydrolase fold IUJ49_03735 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ49_03735 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ49_03740 PF02698 DUF218 domain IUJ49_03745 PF08453 Peptidase family M9 N-terminal IUJ49_03745 PF01752 Collagenase IUJ49_03755 PF00419 Fimbrial protein IUJ49_03765 PF13953 PapC C-terminal domain IUJ49_03765 PF13954 PapC N-terminal domain IUJ49_03765 PF00577 Outer membrane usher protein IUJ49_03770 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ49_03770 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ49_03775 PF00419 Fimbrial protein IUJ49_03780 PF00419 Fimbrial protein IUJ49_03790 PF00501 AMP-binding enzyme IUJ49_03795 PF13378 Enolase C-terminal domain-like IUJ49_03800 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_03805 PF12697 Alpha/beta hydrolase family IUJ49_03810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_03810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ49_03810 PF16582 Middle domain of thiamine pyrophosphate IUJ49_03815 PF00425 chorismate binding enzyme IUJ49_03820 PF01040 UbiA prenyltransferase family IUJ49_03845 PF03880 DbpA RNA binding domain IUJ49_03845 PF00270 DEAD/DEAH box helicase IUJ49_03845 PF00271 Helicase conserved C-terminal domain IUJ49_03850 PF07670 Nucleoside recognition IUJ49_03850 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ49_03850 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ49_03855 PF04307 LexA-binding, inner membrane-associated putative hydrolase IUJ49_03870 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 IUJ49_03875 PF01544 CorA-like Mg2+ transporter protein IUJ49_03895 PF03471 Transporter associated domain IUJ49_03895 PF02080 TrkA-C domain IUJ49_03895 PF00999 Sodium/hydrogen exchanger family IUJ49_03900 PF05068 Mannitol repressor IUJ49_03905 PF08125 Mannitol dehydrogenase C-terminal domain IUJ49_03905 PF01232 Mannitol dehydrogenase Rossmann domain IUJ49_03910 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_03910 PF02378 Phosphotransferase system, EIIC IUJ49_03910 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ49_03920 PF00440 Bacterial regulatory proteins, tetR family IUJ49_03925 PF17876 Cold shock domain IUJ49_03925 PF08206 Ribonuclease B OB domain IUJ49_03925 PF00773 RNB domain IUJ49_03930 PF03466 LysR substrate binding domain IUJ49_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_03935 PF00765 Autoinducer synthase IUJ49_03940 PF03472 Autoinducer binding domain IUJ49_03940 PF00196 Bacterial regulatory proteins, luxR family IUJ49_03945 PF01810 LysE type translocator IUJ49_03950 PF02872 5'-nucleotidase, C-terminal domain IUJ49_03950 PF00149 Calcineurin-like phosphoesterase IUJ49_03955 PF05433 Glycine zipper 2TM domain IUJ49_03960 PF00583 Acetyltransferase (GNAT) family IUJ49_03965 PF11756 Nitrous oxide-stimulated promoter IUJ49_03970 PF01321 Creatinase/Prolidase N-terminal domain IUJ49_03970 PF00557 Metallopeptidase family M24 IUJ49_03975 PF00392 Bacterial regulatory proteins, gntR family IUJ49_03980 PF01293 Phosphoenolpyruvate carboxykinase IUJ49_03985 PF01430 Hsp33 protein IUJ49_03990 PF01479 S4 domain IUJ49_03995 PF11356 Type II secretion system protein C IUJ49_04000 PF03958 Bacterial type II/III secretion system short domain IUJ49_04000 PF00263 Bacterial type II and III secretion system protein IUJ49_04005 PF00437 Type II/IV secretion system protein IUJ49_04010 PF00482 Type II secretion system (T2SS), protein F IUJ49_04015 PF07963 Prokaryotic N-terminal methylation motif IUJ49_04015 PF08334 Type II secretion system (T2SS), protein G IUJ49_04020 PF12019 Type II transport protein GspH IUJ49_04020 PF07963 Prokaryotic N-terminal methylation motif IUJ49_04025 PF07963 Prokaryotic N-terminal methylation motif IUJ49_04025 PF02501 Type II secretion system (T2SS), protein I IUJ49_04030 PF11612 Type II secretion system (T2SS), protein J IUJ49_04030 PF07963 Prokaryotic N-terminal methylation motif IUJ49_04040 PF03934 Type II secretion system (T2SS), protein K IUJ49_04045 PF12693 GspL periplasmic domain IUJ49_04045 PF05134 Type II secretion system (T2SS), protein L IUJ49_04050 PF04612 Type II secretion system (T2SS), protein M IUJ49_04055 PF01203 Type II secretion system (T2SS), protein N IUJ49_04060 PF00196 Bacterial regulatory proteins, luxR family IUJ49_04065 PF01479 S4 domain IUJ49_04065 PF00579 tRNA synthetases class I (W and Y) IUJ49_04070 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_04075 PF00293 NUDIX domain IUJ49_04080 PF00459 Inositol monophosphatase family IUJ49_04085 PF03222 Tryptophan/tyrosine permease family IUJ49_04090 PF01588 Putative tRNA binding domain IUJ49_04095 PF06445 GyrI-like small molecule binding domain IUJ49_04095 PF12833 Helix-turn-helix domain IUJ49_04100 PF01340 Met Apo-repressor, MetJ IUJ49_04105 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ49_04110 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ49_04110 PF00742 Homoserine dehydrogenase IUJ49_04110 PF00696 Amino acid kinase family IUJ49_04115 PF00311 Phosphoenolpyruvate carboxylase IUJ49_04120 PF07687 Peptidase dimerisation domain IUJ49_04120 PF01546 Peptidase family M20/M25/M40 IUJ49_04125 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ49_04125 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ49_04130 PF00696 Amino acid kinase family IUJ49_04135 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ49_04135 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ49_04140 PF00764 Arginosuccinate synthase IUJ49_04145 PF14698 Argininosuccinate lyase C-terminal IUJ49_04145 PF00206 Lyase IUJ49_04175 PF14602 Hexapeptide repeat of succinyl-transferase IUJ49_04175 PF12464 Maltose acetyltransferase IUJ49_04180 PF13194 Domain of unknown function (DUF4010) IUJ49_04195 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_04200 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_04205 PF12857 TOBE-like domain IUJ49_04205 PF00005 ABC transporter IUJ49_04210 PF03466 LysR substrate binding domain IUJ49_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04215 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IUJ49_04215 PF18416 N-acetylglucosamine binding protein domain 2 IUJ49_04220 PF12729 Four helix bundle sensory module for signal transduction IUJ49_04220 PF00672 HAMP domain IUJ49_04220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_04245 PF07676 WD40-like Beta Propeller Repeat IUJ49_04245 PF03572 Peptidase family S41 IUJ49_04245 PF14684 Tricorn protease C1 domain IUJ49_04245 PF14685 Tricorn protease PDZ domain IUJ49_04265 PF11230 Protein of unknown function (DUF3029) IUJ49_04270 PF04055 Radical SAM superfamily IUJ49_04280 PF03466 LysR substrate binding domain IUJ49_04280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04285 PF00155 Aminotransferase class I and II IUJ49_04290 PF02583 Metal-sensitive transcriptional repressor IUJ49_04305 PF11852 Domain of unknown function (DUF3372) IUJ49_04305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ49_04305 PF03714 Bacterial pullanase-associated domain IUJ49_04305 PF18494 Pullulanase Ins domain IUJ49_04305 PF17967 Pullulanase N2 domain IUJ49_04310 PF00403 Heavy-metal-associated domain IUJ49_04315 PF08534 Redoxin IUJ49_04325 PF00271 Helicase conserved C-terminal domain IUJ49_04325 PF00270 DEAD/DEAH box helicase IUJ49_04340 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ49_04345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_04345 PF08447 PAS fold IUJ49_04360 PF06062 Uncharacterised protein family (UPF0231) IUJ49_04365 PF05651 Putative sugar diacid recognition IUJ49_04365 PF17853 GGDEF-like domain IUJ49_04365 PF13556 PucR C-terminal helix-turn-helix domain IUJ49_04370 PF02447 GntP family permease IUJ49_04375 PF02595 Glycerate kinase family IUJ49_04385 PF00255 Glutathione peroxidase IUJ49_04390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04390 PF03466 LysR substrate binding domain IUJ49_04395 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ49_04395 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ49_04395 PF07670 Nucleoside recognition IUJ49_04400 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ49_04400 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ49_04405 PF00472 RF-1 domain IUJ49_04410 PF00543 Nitrogen regulatory protein P-II IUJ49_04415 PF13416 Bacterial extracellular solute-binding protein IUJ49_04425 PF00005 ABC transporter IUJ49_04425 PF08402 TOBE domain IUJ49_04430 PF04261 Dyp-type peroxidase family IUJ49_04435 PF02863 Arginine repressor, C-terminal domain IUJ49_04435 PF01316 Arginine repressor, DNA binding domain IUJ49_04440 PF00005 ABC transporter IUJ49_04445 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_04450 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_04455 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_04460 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain IUJ49_04460 PF00056 lactate/malate dehydrogenase, NAD binding domain IUJ49_04465 PF08238 Sel1 repeat IUJ49_04470 PF00970 Oxidoreductase FAD-binding domain IUJ49_04470 PF00042 Globin IUJ49_04470 PF00175 Oxidoreductase NAD-binding domain IUJ49_04475 PF02082 Transcriptional regulator IUJ49_04480 PF01595 Cyclin M transmembrane N-terminal domain IUJ49_04480 PF03471 Transporter associated domain IUJ49_04480 PF00571 CBS domain IUJ49_04485 PF01578 Cytochrome C assembly protein IUJ49_04490 PF02978 Signal peptide binding domain IUJ49_04490 PF02881 SRP54-type protein, helical bundle domain IUJ49_04490 PF00448 SRP54-type protein, GTPase domain IUJ49_04495 PF00886 Ribosomal protein S16 IUJ49_04500 PF05239 PRC-barrel domain IUJ49_04500 PF01782 RimM N-terminal domain IUJ49_04505 PF01746 tRNA (Guanine-1)-methyltransferase IUJ49_04510 PF01245 Ribosomal protein L19 IUJ49_04520 PF02976 DNA mismatch repair enzyme MutH IUJ49_04525 PF00293 NUDIX domain IUJ49_04530 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ49_04530 PF01590 GAF domain IUJ49_04530 PF00391 PEP-utilising enzyme, mobile domain IUJ49_04530 PF05524 PEP-utilising enzyme, N-terminal IUJ49_04535 PF01790 Prolipoprotein diacylglyceryl transferase IUJ49_04540 PF00303 Thymidylate synthase IUJ49_04545 PF06965 Na+/H+ antiporter 1 IUJ49_04555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04555 PF03466 LysR substrate binding domain IUJ49_04560 PF01022 Bacterial regulatory protein, arsR family IUJ49_04565 PF01649 Ribosomal protein S20 IUJ49_04570 PF03023 Lipid II flippase MurJ IUJ49_04580 PF06574 FAD synthetase IUJ49_04580 PF01687 Riboflavin kinase IUJ49_04585 PF08264 Anticodon-binding domain of tRNA IUJ49_04585 PF00133 tRNA synthetases class I (I, L, M and V) IUJ49_04585 PF06827 Zinc finger found in FPG and IleRS IUJ49_04590 PF01252 Signal peptidase (SPase) II IUJ49_04595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_04600 PF02401 LytB protein IUJ49_04605 PF12019 Type II transport protein GspH IUJ49_04605 PF07963 Prokaryotic N-terminal methylation motif IUJ49_04625 PF05567 Neisseria PilC beta-propeller domain IUJ49_04660 PF02540 NAD synthase IUJ49_04660 PF00795 Carbon-nitrogen hydrolase IUJ49_04665 PF00543 Nitrogen regulatory protein P-II IUJ49_04675 PF02664 S-Ribosylhomocysteinase (LuxS) IUJ49_04680 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_04685 PF00575 S1 RNA binding domain IUJ49_04685 PF00773 RNB domain IUJ49_04685 PF17876 Cold shock domain IUJ49_04685 PF08461 Ribonuclease R winged-helix domain IUJ49_04685 PF08206 Ribonuclease B OB domain IUJ49_04690 PF00588 SpoU rRNA Methylase family IUJ49_04690 PF08032 RNA 2'-O ribose methyltransferase substrate binding IUJ49_04700 PF13673 Acetyltransferase (GNAT) domain IUJ49_04720 PF01566 Natural resistance-associated macrophage protein IUJ49_04725 PF01250 Ribosomal protein S6 IUJ49_04730 PF01084 Ribosomal protein S18 IUJ49_04735 PF03948 Ribosomal protein L9, C-terminal domain IUJ49_04735 PF01281 Ribosomal protein L9, N-terminal domain IUJ49_04740 PF00970 Oxidoreductase FAD-binding domain IUJ49_04740 PF00175 Oxidoreductase NAD-binding domain IUJ49_04760 PF00698 Acyl transferase domain IUJ49_04760 PF08240 Alcohol dehydrogenase GroES-like domain IUJ49_04760 PF08990 Erythronolide synthase docking IUJ49_04760 PF16197 Ketoacyl-synthetase C-terminal extension IUJ49_04760 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ49_04760 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ49_04760 PF08659 KR domain IUJ49_04760 PF00550 Phosphopantetheine attachment site IUJ49_04760 PF14765 Polyketide synthase dehydratase IUJ49_04765 PF09335 SNARE associated Golgi protein IUJ49_04770 PF00675 Insulinase (Peptidase family M16) IUJ49_04770 PF05193 Peptidase M16 inactive domain IUJ49_04775 PF04262 Glutamate-cysteine ligase IUJ49_04780 PF00501 AMP-binding enzyme IUJ49_04790 PF00583 Acetyltransferase (GNAT) family IUJ49_04800 PF07728 AAA domain (dynein-related subfamily) IUJ49_04800 PF17868 AAA lid domain IUJ49_04800 PF12592 Protein of unknown function (DUF3763) IUJ49_04810 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_04815 PF00072 Response regulator receiver domain IUJ49_04815 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_04820 PF00009 Elongation factor Tu GTP binding domain IUJ49_04820 PF03144 Elongation factor Tu domain 2 IUJ49_04820 PF16658 Class II release factor RF3, C-terminal domain IUJ49_04840 PF00583 Acetyltransferase (GNAT) family IUJ49_04845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ49_04855 PF03466 LysR substrate binding domain IUJ49_04855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04860 PF04371 Porphyromonas-type peptidyl-arginine deiminase IUJ49_04865 PF01425 Amidase IUJ49_04895 PF00753 Metallo-beta-lactamase superfamily IUJ49_04905 PF00271 Helicase conserved C-terminal domain IUJ49_04905 PF00270 DEAD/DEAH box helicase IUJ49_04910 PF05643 Putative bacterial lipoprotein (DUF799) IUJ49_04920 PF03783 Curli production assembly/transport component CsgG IUJ49_04925 PF03466 LysR substrate binding domain IUJ49_04925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_04945 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase IUJ49_04950 PF00034 Cytochrome c IUJ49_04950 PF03150 Di-haem cytochrome c peroxidase IUJ49_04965 PF00445 Ribonuclease T2 family IUJ49_04975 PF03060 Nitronate monooxygenase IUJ49_05005 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain IUJ49_05005 PF00293 NUDIX domain IUJ49_05005 PF09297 NADH pyrophosphatase zinc ribbon domain IUJ49_05010 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_05010 PF00672 HAMP domain IUJ49_05010 PF16527 Two-component sensor protein CpxA, periplasmic domain IUJ49_05010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_05015 PF00072 Response regulator receiver domain IUJ49_05015 PF00486 Transcriptional regulatory protein, C terminal IUJ49_05020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_05025 PF02687 FtsX-like permease family IUJ49_05025 PF00005 ABC transporter IUJ49_05025 PF12704 MacB-like periplasmic core domain IUJ49_05030 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_05035 PF00005 ABC transporter IUJ49_05040 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_05045 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_05050 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_05055 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IUJ49_05055 PF00326 Prolyl oligopeptidase family IUJ49_05075 PF08335 GlnD PII-uridylyltransferase IUJ49_05075 PF03710 Glutamate-ammonia ligase adenylyltransferase IUJ49_05085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_05085 PF02743 Cache domain IUJ49_05085 PF00672 HAMP domain IUJ49_05090 PF00027 Cyclic nucleotide-binding domain IUJ49_05090 PF00520 Ion transport protein IUJ49_05095 PF08239 Bacterial SH3 domain IUJ49_05100 PF00171 Aldehyde dehydrogenase family IUJ49_05100 PF18327 Proline utilization A proline dehydrogenase N-terminal domain IUJ49_05100 PF14850 DNA-binding domain of Proline dehydrogenase IUJ49_05100 PF01619 Proline dehydrogenase IUJ49_05105 PF00293 NUDIX domain IUJ49_05105 PF09297 NADH pyrophosphatase zinc ribbon domain IUJ49_05110 PF01208 Uroporphyrinogen decarboxylase (URO-D) IUJ49_05115 PF00480 ROK family IUJ49_05120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ49_05120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ49_05125 PF00162 Phosphoglycerate kinase IUJ49_05130 PF01116 Fructose-bisphosphate aldolase class-II IUJ49_05135 PF01266 FAD dependent oxidoreductase IUJ49_05145 PF11412 Disulphide bond corrector protein DsbC IUJ49_05145 PF02683 Cytochrome C biogenesis protein transmembrane region IUJ49_05150 PF03091 CutA1 divalent ion tolerance protein IUJ49_05165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_05165 PF03466 LysR substrate binding domain IUJ49_05170 PF01571 Aminomethyltransferase folate-binding domain IUJ49_05175 PF03937 Flavinator of succinate dehydrogenase IUJ49_05185 PF02910 Fumarate reductase flavoprotein C-term IUJ49_05185 PF00890 FAD binding domain IUJ49_05190 PF08281 Sigma-70, region 4 IUJ49_05190 PF04542 Sigma-70 region 2 IUJ49_05195 PF03873 Anti sigma-E protein RseA, C-terminal domain IUJ49_05195 PF03872 Anti sigma-E protein RseA, N-terminal domain IUJ49_05200 PF03888 MucB/RseB N-terminal domain IUJ49_05200 PF17188 MucB/RseB C-terminal domain IUJ49_05210 PF06421 GTP-binding protein LepA C-terminus IUJ49_05210 PF03144 Elongation factor Tu domain 2 IUJ49_05210 PF00009 Elongation factor Tu GTP binding domain IUJ49_05210 PF00679 Elongation factor G C-terminus IUJ49_05215 PF10502 Signal peptidase, peptidase S26 IUJ49_05220 PF14622 Ribonuclease-III-like IUJ49_05220 PF00035 Double-stranded RNA binding motif IUJ49_05225 PF07650 KH domain IUJ49_05225 PF01926 50S ribosome-binding GTPase IUJ49_05230 PF11967 Recombination protein O N terminal IUJ49_05230 PF02565 Recombination protein O C terminal IUJ49_05235 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ IUJ49_05245 PF01116 Fructose-bisphosphate aldolase class-II IUJ49_05250 PF01979 Amidohydrolase family IUJ49_05255 PF03610 PTS system fructose IIA component IUJ49_05260 PF03613 PTS system mannose/fructose/sorbose family IID component IUJ49_05265 PF03609 PTS system sorbose-specific iic component IUJ49_05270 PF03830 PTS system sorbose subfamily IIB component IUJ49_05275 PF01380 SIS domain IUJ49_05280 PF08013 Tagatose 6 phosphate kinase IUJ49_05285 PF08220 DeoR-like helix-turn-helix domain IUJ49_05285 PF00455 DeoR C terminal sensor domain IUJ49_05290 PF01510 N-acetylmuramoyl-L-alanine amidase IUJ49_05295 PF07308 Protein of unknown function (DUF1456) IUJ49_05300 PF00672 HAMP domain IUJ49_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_05300 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_05300 PF01627 Hpt domain IUJ49_05300 PF00072 Response regulator receiver domain IUJ49_05300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ49_05305 PF01938 TRAM domain IUJ49_05305 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ49_05310 PF02824 TGS domain IUJ49_05310 PF13291 ACT domain IUJ49_05310 PF04607 Region found in RelA / SpoT proteins IUJ49_05315 PF03819 MazG nucleotide pyrophosphohydrolase domain IUJ49_05320 PF00117 Glutamine amidotransferase class-I IUJ49_05320 PF06418 CTP synthase N-terminus IUJ49_05325 PF03952 Enolase, N-terminal domain IUJ49_05325 PF00113 Enolase, C-terminal TIM barrel domain IUJ49_05330 PF04977 Septum formation initiator IUJ49_05335 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase IUJ49_05340 PF02542 YgbB family IUJ49_05345 PF01142 tRNA pseudouridine synthase D (TruD) IUJ49_05350 PF01975 Survival protein SurE IUJ49_05360 PF09335 SNARE associated Golgi protein IUJ49_05365 PF01551 Peptidase family M23 IUJ49_05365 PF01476 LysM domain IUJ49_05370 PF04545 Sigma-70, region 4 IUJ49_05370 PF04539 Sigma-70 region 3 IUJ49_05370 PF04542 Sigma-70 region 2 IUJ49_05370 PF00140 Sigma-70 factor, region 1.2 IUJ49_05375 PF00814 Glycoprotease family IUJ49_05380 PF01165 Ribosomal protein S21 IUJ49_05385 PF09424 Yqey-like protein IUJ49_05390 PF08275 DNA primase catalytic core, N-terminal domain IUJ49_05390 PF10410 DnaB-helicase binding domain of primase IUJ49_05390 PF01807 CHC2 zinc finger IUJ49_05390 PF08278 DNA primase DnaG DnaB-binding IUJ49_05395 PF04539 Sigma-70 region 3 IUJ49_05395 PF04545 Sigma-70, region 4 IUJ49_05395 PF04542 Sigma-70 region 2 IUJ49_05395 PF00140 Sigma-70 factor, region 1.2 IUJ49_05395 PF04546 Sigma-70, non-essential region IUJ49_05395 PF03979 Sigma-70 factor, region 1.1 IUJ49_05405 PF00128 Alpha amylase, catalytic domain IUJ49_05420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain IUJ49_05420 PF02843 Phosphoribosylglycinamide synthetase, C domain IUJ49_05420 PF02844 Phosphoribosylglycinamide synthetase, N domain IUJ49_05425 PF01808 AICARFT/IMPCHase bienzyme IUJ49_05425 PF02142 MGS-like domain IUJ49_05430 PF13411 MerR HTH family regulatory protein IUJ49_05435 PF01872 RibD C-terminal domain IUJ49_05440 PF03889 Alternative ribosome-rescue factor A IUJ49_05445 PF06969 HemN C-terminal domain IUJ49_05445 PF04055 Radical SAM superfamily IUJ49_05450 PF01725 Ham1 family IUJ49_05455 PF07690 Major Facilitator Superfamily IUJ49_05460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ49_05460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IUJ49_05470 PF13302 Acetyltransferase (GNAT) domain IUJ49_05475 PF13302 Acetyltransferase (GNAT) domain IUJ49_05480 PF07504 Fungalysin/Thermolysin Propeptide Motif IUJ49_05480 PF03413 Peptidase propeptide and YPEB domain IUJ49_05480 PF01447 Thermolysin metallopeptidase, catalytic domain IUJ49_05480 PF02868 Thermolysin metallopeptidase, alpha-helical domain IUJ49_05480 PF04151 Bacterial pre-peptidase C-terminal domain IUJ49_05485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_05485 PF03466 LysR substrate binding domain IUJ49_05490 PF07690 Major Facilitator Superfamily IUJ49_05495 PF00267 Gram-negative porin IUJ49_05500 PF03605 Anaerobic c4-dicarboxylate membrane transporter IUJ49_05505 PF10415 Fumarase C C-terminus IUJ49_05505 PF00206 Lyase IUJ49_05510 PF04186 FxsA cytoplasmic membrane protein IUJ49_05515 PF01554 MatE IUJ49_05520 PF00166 Chaperonin 10 Kd subunit IUJ49_05525 PF00118 TCP-1/cpn60 chaperonin family IUJ49_05535 PF03707 Bacterial signalling protein N terminal repeat IUJ49_05535 PF13188 PAS domain IUJ49_05535 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_05535 PF00563 EAL domain IUJ49_05545 PF00849 RNA pseudouridylate synthase IUJ49_05550 PF18337 RapA N-terminal Tudor like domain IUJ49_05550 PF18339 RapA N-terminal Tudor like domain 1 IUJ49_05550 PF00176 SNF2 family N-terminal domain IUJ49_05550 PF00271 Helicase conserved C-terminal domain IUJ49_05550 PF12137 RNA polymerase recycling family C-terminal IUJ49_05575 PF01810 LysE type translocator IUJ49_05580 PF02954 Bacterial regulatory protein, Fis family IUJ49_05585 PF01207 Dihydrouridine synthase (Dus) IUJ49_05590 PF02321 Outer membrane efflux protein IUJ49_05595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_05625 PF00072 Response regulator receiver domain IUJ49_05630 PF00854 POT family IUJ49_05635 PF00483 Nucleotidyl transferase IUJ49_05645 PF00459 Inositol monophosphatase family IUJ49_05650 PF03795 YCII-related domain IUJ49_05655 PF04279 Intracellular septation protein A IUJ49_05660 PF00282 Pyridoxal-dependent decarboxylase conserved domain IUJ49_05665 PF03006 Haemolysin-III related IUJ49_05670 PF06826 Predicted Permease Membrane Region IUJ49_05670 PF02080 TrkA-C domain IUJ49_05680 PF00072 Response regulator receiver domain IUJ49_05680 PF01584 CheW-like domain IUJ49_05685 PF13472 GDSL-like Lipase/Acylhydrolase family IUJ49_05690 PF00005 ABC transporter IUJ49_05700 PF01370 NAD dependent epimerase/dehydratase family IUJ49_05700 PF08338 Domain of unknown function (DUF1731) IUJ49_05705 PF00563 EAL domain IUJ49_05705 PF12792 CSS motif domain associated with EAL IUJ49_05710 PF00155 Aminotransferase class I and II IUJ49_05715 PF04389 Peptidase family M28 IUJ49_05715 PF01483 Proprotein convertase P-domain IUJ49_05720 PF02390 Putative methyltransferase IUJ49_05725 PF04320 Protein with unknown function (DUF469) IUJ49_05730 PF04960 Glutaminase IUJ49_05735 PF00581 Rhodanese-like domain IUJ49_05740 PF00082 Subtilase family IUJ49_05740 PF05922 Peptidase inhibitor I9 IUJ49_05745 PF06004 Bacterial protein of unknown function (DUF903) IUJ49_05750 PF00005 ABC transporter IUJ49_05750 PF00664 ABC transporter transmembrane region IUJ49_05755 PF00561 alpha/beta hydrolase fold IUJ49_05770 PF00801 PKD domain IUJ49_05770 PF05547 Immune inhibitor A peptidase M6 IUJ49_05775 PF06877 Regulator of ribonuclease activity B IUJ49_05780 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_05780 PF03707 Bacterial signalling protein N terminal repeat IUJ49_05780 PF00563 EAL domain IUJ49_05790 PF12852 Cupin IUJ49_05790 PF12833 Helix-turn-helix domain IUJ49_05795 PF02627 Carboxymuconolactone decarboxylase family IUJ49_05800 PF04224 Protein of unknown function, DUF417 IUJ49_05815 PF09905 DNA-binding protein VF530 IUJ49_05820 PF02666 Phosphatidylserine decarboxylase IUJ49_05825 PF03193 RsgA GTPase IUJ49_05830 PF00929 Exonuclease IUJ49_05870 PF00313 'Cold-shock' DNA-binding domain IUJ49_05880 PF00672 HAMP domain IUJ49_05880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_05885 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ49_05890 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ49_05900 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ49_05935 PF06483 Chitinase C IUJ49_05935 PF00704 Glycosyl hydrolases family 18 IUJ49_05950 PF02472 Biopolymer transport protein ExbD/TolR IUJ49_05955 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_05960 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_05970 PF07715 TonB-dependent Receptor Plug Domain IUJ49_05970 PF00593 TonB dependent receptor IUJ49_05975 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_05980 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_05980 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_05990 PF00005 ABC transporter IUJ49_05990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_05995 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_05995 PF00005 ABC transporter IUJ49_06000 PF01546 Peptidase family M20/M25/M40 IUJ49_06000 PF07687 Peptidase dimerisation domain IUJ49_06005 PF00156 Phosphoribosyl transferase domain IUJ49_06010 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) IUJ49_06015 PF07417 Sigma factor-binding transcriptional regulator Crl IUJ49_06020 PF01472 PUA domain IUJ49_06020 PF00696 Amino acid kinase family IUJ49_06025 PF00171 Aldehyde dehydrogenase family IUJ49_06035 PF00582 Universal stress protein family IUJ49_06055 PF01568 Molydopterin dinucleotide binding domain IUJ49_06055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_06055 PF04324 BFD-like [2Fe-2S] binding domain IUJ49_06055 PF00384 Molybdopterin oxidoreductase IUJ49_06060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ49_06060 PF14824 Sirohaem biosynthesis protein central IUJ49_06060 PF10414 Sirohaem synthase dimerisation region IUJ49_06070 PF00005 ABC transporter IUJ49_06075 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_06080 PF00005 ABC transporter IUJ49_06085 PF13806 Rieske-like [2Fe-2S] domain IUJ49_06085 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ49_06085 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_06085 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ49_06085 PF04324 BFD-like [2Fe-2S] binding domain IUJ49_06085 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ49_06090 PF13806 Rieske-like [2Fe-2S] domain IUJ49_06090 PF04324 BFD-like [2Fe-2S] binding domain IUJ49_06090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ49_06090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ49_06090 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_06090 PF18267 Rubredoxin NAD+ reductase C-terminal domain IUJ49_06095 PF00294 pfkB family carbohydrate kinase IUJ49_06100 PF04227 Indigoidine synthase A like protein IUJ49_06105 PF04227 Indigoidine synthase A like protein IUJ49_06110 PF00194 Eukaryotic-type carbonic anhydrase IUJ49_06115 PF00034 Cytochrome c IUJ49_06115 PF03150 Di-haem cytochrome c peroxidase IUJ49_06150 PF00550 Phosphopantetheine attachment site IUJ49_06155 PF00550 Phosphopantetheine attachment site IUJ49_06165 PF00501 AMP-binding enzyme IUJ49_06165 PF13193 AMP-binding enzyme C-terminal domain IUJ49_06170 PF07977 FabA-like domain IUJ49_06180 PF00221 Aromatic amino acid lyase IUJ49_06205 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ49_06205 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ49_06220 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ49_06220 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ49_06230 PF00994 Probable molybdopterin binding domain IUJ49_06240 PF06738 Putative threonine/serine exporter IUJ49_06245 PF12821 Threonine/Serine exporter, ThrE IUJ49_06250 PF00186 Dihydrofolate reductase IUJ49_06255 PF00571 CBS domain IUJ49_06255 PF00005 ABC transporter IUJ49_06260 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_06265 PF04069 Substrate binding domain of ABC-type glycine betaine transport system IUJ49_06270 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ49_06275 PF01077 Nitrite and sulphite reductase 4Fe-4S domain IUJ49_06275 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain IUJ49_06280 PF00667 FAD binding domain IUJ49_06280 PF00258 Flavodoxin IUJ49_06280 PF00175 Oxidoreductase NAD-binding domain IUJ49_06285 PF02567 Phenazine biosynthesis-like protein IUJ49_06290 PF01336 OB-fold nucleic acid binding domain IUJ49_06290 PF00152 tRNA synthetases class II (D, K and N) IUJ49_06300 PF02743 Cache domain IUJ49_06300 PF00672 HAMP domain IUJ49_06300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_06305 PF03616 Sodium/glutamate symporter IUJ49_06310 PF00710 Asparaginase, N-terminal IUJ49_06310 PF17763 Glutaminase/Asparaginase C-terminal domain IUJ49_06315 PF07023 Protein of unknown function (DUF1315) IUJ49_06320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ49_06320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ49_06335 PF01343 Peptidase family S49 IUJ49_06340 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_06340 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ49_06345 PF00881 Nitroreductase family IUJ49_06350 PF14602 Hexapeptide repeat of succinyl-transferase IUJ49_06350 PF12464 Maltose acetyltransferase IUJ49_06355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_06355 PF01842 ACT domain IUJ49_06355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ49_06365 PF08240 Alcohol dehydrogenase GroES-like domain IUJ49_06365 PF00107 Zinc-binding dehydrogenase IUJ49_06370 PF03466 LysR substrate binding domain IUJ49_06370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_06375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ49_06375 PF00367 phosphotransferase system, EIIB IUJ49_06375 PF02378 Phosphotransferase system, EIIC IUJ49_06380 PF00474 Sodium:solute symporter family IUJ49_06390 PF02785 Biotin carboxylase C-terminal domain IUJ49_06390 PF00289 Biotin carboxylase, N-terminal domain IUJ49_06390 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ49_06395 PF00364 Biotin-requiring enzyme IUJ49_06400 PF01220 Dehydroquinase class II IUJ49_06405 PF16177 Acetyl-coenzyme A synthetase N-terminus IUJ49_06405 PF00501 AMP-binding enzyme IUJ49_06405 PF13193 AMP-binding enzyme C-terminal domain IUJ49_06415 PF00563 EAL domain IUJ49_06415 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_06415 PF03707 Bacterial signalling protein N terminal repeat IUJ49_06415 PF13188 PAS domain IUJ49_06435 PF02613 Nitrate reductase delta subunit IUJ49_06450 PF00464 Serine hydroxymethyltransferase IUJ49_06465 PF03477 ATP cone domain IUJ49_06470 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ49_06470 PF01872 RibD C-terminal domain IUJ49_06475 PF00677 Lumazine binding domain IUJ49_06480 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ49_06480 PF00925 GTP cyclohydrolase II IUJ49_06490 PF00885 6,7-dimethyl-8-ribityllumazine synthase IUJ49_06495 PF01029 NusB family IUJ49_06500 PF00586 AIR synthase related protein, N-terminal domain IUJ49_06500 PF02769 AIR synthase related protein, C-terminal domain IUJ49_06505 PF04608 Phosphatidylglycerophosphatase A IUJ49_06510 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_06510 PF00005 ABC transporter IUJ49_06515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_06520 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_06525 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_06525 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_06530 PF13292 1-deoxy-D-xylulose-5-phosphate synthase IUJ49_06530 PF02779 Transketolase, pyrimidine binding domain IUJ49_06530 PF02780 Transketolase, C-terminal domain IUJ49_06535 PF00348 Polyprenyl synthetase IUJ49_06540 PF02609 Exonuclease VII small subunit IUJ49_06545 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_06550 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ49_06550 PF00691 OmpA family IUJ49_06555 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ49_06555 PF03449 Transcription elongation factor, N-terminal IUJ49_06565 PF01985 CRS1 / YhbY (CRM) domain IUJ49_06570 PF01728 FtsJ-like methyltransferase IUJ49_06575 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_06575 PF17862 AAA+ lid domain IUJ49_06575 PF06480 FtsH Extracellular IUJ49_06575 PF01434 Peptidase family M41 IUJ49_06580 PF00809 Pterin binding enzyme IUJ49_06585 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ49_06585 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ49_06585 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ49_06585 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ49_06590 PF00121 Triosephosphate isomerase IUJ49_06595 PF03840 Preprotein translocase SecG subunit IUJ49_06610 PF02576 RimP N-terminal domain IUJ49_06610 PF17384 RimP C-terminal SH3 domain IUJ49_06615 PF00575 S1 RNA binding domain IUJ49_06615 PF08529 NusA N-terminal domain IUJ49_06615 PF13184 NusA-like KH domain IUJ49_06620 PF08364 Bacterial translation initiation factor IF-2 associated region IUJ49_06620 PF11987 Translation-initiation factor 2 IUJ49_06620 PF04760 Translation initiation factor IF-2, N-terminal region IUJ49_06620 PF00009 Elongation factor Tu GTP binding domain IUJ49_06625 PF02033 Ribosome-binding factor A IUJ49_06630 PF16198 tRNA pseudouridylate synthase B C-terminal domain IUJ49_06630 PF09157 Pseudouridine synthase II TruB, C-terminal IUJ49_06630 PF01509 TruB family pseudouridylate synthase (N terminal domain) IUJ49_06635 PF00312 Ribosomal protein S15 IUJ49_06640 PF00013 KH domain IUJ49_06640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain IUJ49_06640 PF01138 3' exoribonuclease family, domain 1 IUJ49_06640 PF03725 3' exoribonuclease family, domain 2 IUJ49_06640 PF00575 S1 RNA binding domain IUJ49_06645 PF07690 Major Facilitator Superfamily IUJ49_06650 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_06655 PF02635 DsrE/DsrF-like family IUJ49_06665 PF00206 Lyase IUJ49_06665 PF10415 Fumarase C C-terminus IUJ49_06670 PF03575 Peptidase family S51 IUJ49_06675 PF02554 Carbon starvation protein CstA IUJ49_06675 PF13722 5TM C-terminal transporter carbon starvation CstA IUJ49_06680 PF04397 LytTr DNA-binding domain IUJ49_06680 PF00072 Response regulator receiver domain IUJ49_06685 PF07694 5TMR of 5TMR-LYT IUJ49_06685 PF06580 Histidine kinase IUJ49_06690 PF00196 Bacterial regulatory proteins, luxR family IUJ49_06690 PF00072 Response regulator receiver domain IUJ49_06695 PF00989 PAS fold IUJ49_06695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_06695 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_06700 PF13247 4Fe-4S dicluster domain IUJ49_06705 PF03916 Polysulphide reductase, NrfD IUJ49_06710 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_06710 PF00384 Molybdopterin oxidoreductase IUJ49_06710 PF01568 Molydopterin dinucleotide binding domain IUJ49_06730 PF02668 Taurine catabolism dioxygenase TauD, TfdA family IUJ49_06735 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase IUJ49_06740 PF17969 L,D-transpeptidase C-terminal domain IUJ49_06740 PF03734 L,D-transpeptidase catalytic domain IUJ49_06750 PF01523 Putative modulator of DNA gyrase IUJ49_06755 PF01523 Putative modulator of DNA gyrase IUJ49_06760 PF00258 Flavodoxin IUJ49_06765 PF00589 Phage integrase family IUJ49_06765 PF02899 Phage integrase, N-terminal SAM-like domain IUJ49_06770 PF01741 Large-conductance mechanosensitive channel, MscL IUJ49_06775 PF10411 Disulfide bond isomerase protein N-terminus IUJ49_06775 PF13098 Thioredoxin-like domain IUJ49_06780 PF01368 DHH family IUJ49_06780 PF02272 DHHA1 domain IUJ49_06780 PF17768 RecJ OB domain IUJ49_06785 PF13411 MerR HTH family regulatory protein IUJ49_06800 PF02508 Rnf-Nqr subunit, membrane protein IUJ49_06805 PF06821 Serine hydrolase IUJ49_06815 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family IUJ49_06815 PF04055 Radical SAM superfamily IUJ49_06820 PF03099 Biotin/lipoate A/B protein ligase family IUJ49_06825 PF04359 Protein of unknown function (DUF493) IUJ49_06830 PF07943 Penicillin-binding protein 5, C-terminal domain IUJ49_06830 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ49_06835 PF03330 Lytic transglycolase IUJ49_06835 PF05036 Sporulation related domain IUJ49_06840 PF13406 Transglycosylase SLT domain IUJ49_06845 PF01098 Cell cycle protein IUJ49_06850 PF01098 Cell cycle protein IUJ49_06855 PF03717 Penicillin-binding Protein dimerisation domain IUJ49_06855 PF00905 Penicillin binding protein transpeptidase domain IUJ49_06860 PF02590 Predicted SPOUT methyltransferase IUJ49_06870 PF01467 Cytidylyltransferase-like IUJ49_06890 PF00133 tRNA synthetases class I (I, L, M and V) IUJ49_06890 PF13603 Leucyl-tRNA synthetase, Domain 2 IUJ49_06890 PF08264 Anticodon-binding domain of tRNA IUJ49_06895 PF07295 Zinc-ribbon containing domain IUJ49_06900 PF00795 Carbon-nitrogen hydrolase IUJ49_06905 PF03471 Transporter associated domain IUJ49_06905 PF00571 CBS domain IUJ49_06910 PF02130 Uncharacterized protein family UPF0054 IUJ49_06915 PF02562 PhoH-like protein IUJ49_06925 PF01494 FAD binding domain IUJ49_06930 PF00857 Isochorismatase family IUJ49_06935 PF00313 'Cold-shock' DNA-binding domain IUJ49_06940 PF05230 MASE2 domain IUJ49_06940 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_06945 PF03466 LysR substrate binding domain IUJ49_06945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_06955 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_06975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_06975 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ49_06985 PF09997 Predicted membrane protein (DUF2238) IUJ49_06990 PF08207 Elongation factor P (EF-P) KOW-like domain IUJ49_06990 PF09285 Elongation factor P, C-terminal IUJ49_06990 PF01132 Elongation factor P (EF-P) OB domain IUJ49_07000 PF00478 IMP dehydrogenase / GMP reductase domain IUJ49_07020 PF08521 Two-component sensor kinase N-terminal IUJ49_07020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_07020 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_07025 PF00072 Response regulator receiver domain IUJ49_07025 PF00486 Transcriptional regulatory protein, C terminal IUJ49_07045 PF00501 AMP-binding enzyme IUJ49_07060 PF06224 Winged helix DNA-binding domain IUJ49_07080 PF02313 Fumarate reductase subunit D IUJ49_07085 PF02300 Fumarate reductase subunit C IUJ49_07090 PF13085 2Fe-2S iron-sulfur cluster binding domain IUJ49_07090 PF13183 4Fe-4S dicluster domain IUJ49_07095 PF00890 FAD binding domain IUJ49_07095 PF02910 Fumarate reductase flavoprotein C-term IUJ49_07100 PF02743 Cache domain IUJ49_07100 PF00672 HAMP domain IUJ49_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_07105 PF03009 Glycerophosphoryl diester phosphodiesterase family IUJ49_07110 PF12795 Mechanosensitive ion channel porin domain IUJ49_07110 PF12794 Mechanosensitive ion channel inner membrane domain 1 IUJ49_07110 PF00924 Mechanosensitive ion channel IUJ49_07120 PF01476 LysM domain IUJ49_07120 PF01551 Peptidase family M23 IUJ49_07120 PF08525 Opacity-associated protein A N-terminal motif IUJ49_07135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_07135 PF03466 LysR substrate binding domain IUJ49_07150 PF02743 Cache domain IUJ49_07150 PF00672 HAMP domain IUJ49_07150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_07155 PF03466 LysR substrate binding domain IUJ49_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_07160 PF17092 Penicillin-binding protein OB-like domain IUJ49_07160 PF00912 Transglycosylase IUJ49_07160 PF00905 Penicillin binding protein transpeptidase domain IUJ49_07165 PF11104 Type IV pilus assembly protein PilM; IUJ49_07175 PF04350 Pilus assembly protein, PilO IUJ49_07185 PF11741 AMIN domain IUJ49_07185 PF00263 Bacterial type II and III secretion system protein IUJ49_07185 PF03958 Bacterial type II/III secretion system short domain IUJ49_07185 PF07660 Secretin and TonB N terminus short domain IUJ49_07190 PF01202 Shikimate kinase IUJ49_07195 PF01761 3-dehydroquinate synthase IUJ49_07205 PF02086 D12 class N6 adenine-specific DNA methyltransferase IUJ49_07210 PF00834 Ribulose-phosphate 3 epimerase family IUJ49_07215 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_07220 PF00579 tRNA synthetases class I (W and Y) IUJ49_07230 PF00117 Glutamine amidotransferase class-I IUJ49_07235 PF00202 Aminotransferase class-III IUJ49_07240 PF04958 Arginine N-succinyltransferase beta subunit IUJ49_07245 PF00171 Aldehyde dehydrogenase family IUJ49_07255 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_07260 PF07690 Major Facilitator Superfamily IUJ49_07265 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg IUJ49_07265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_07265 PF10371 Domain of unknown function IUJ49_07265 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II IUJ49_07265 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase IUJ49_07275 PF00128 Alpha amylase, catalytic domain IUJ49_07275 PF16657 Maltogenic Amylase, C-terminal domain IUJ49_07285 PF04266 ASCH domain IUJ49_07295 PF01048 Phosphorylase superfamily IUJ49_07300 PF04973 Nicotinamide mononucleotide transporter IUJ49_07305 PF03600 Citrate transporter IUJ49_07305 PF02080 TrkA-C domain IUJ49_07350 PF06071 Protein of unknown function (DUF933) IUJ49_07350 PF01926 50S ribosome-binding GTPase IUJ49_07355 PF01195 Peptidyl-tRNA hydrolase IUJ49_07360 PF02872 5'-nucleotidase, C-terminal domain IUJ49_07360 PF00149 Calcineurin-like phosphoesterase IUJ49_07365 PF14572 Phosphoribosyl synthetase-associated domain IUJ49_07365 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase IUJ49_07375 PF08544 GHMP kinases C terminal IUJ49_07375 PF00288 GHMP kinases N terminal domain IUJ49_07380 PF03550 Outer membrane lipoprotein LolB IUJ49_07385 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain IUJ49_07385 PF01488 Shikimate / quinate 5-dehydrogenase IUJ49_07385 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain IUJ49_07390 PF03462 PCRF domain IUJ49_07390 PF00472 RF-1 domain IUJ49_07395 PF13847 Methyltransferase domain IUJ49_07395 PF17827 PrmC N-terminal domain IUJ49_07405 PF13369 Transglutaminase-like superfamily IUJ49_07410 PF00793 DAHP synthetase I family IUJ49_07415 PF00375 Sodium:dicarboxylate symporter family IUJ49_07420 PF01228 Glycine radical IUJ49_07425 PF03167 Uracil DNA glycosylase superfamily IUJ49_07440 PF00923 Transaldolase/Fructose-6-phosphate aldolase IUJ49_07445 PF01235 Sodium:alanine symporter family IUJ49_07450 PF01841 Transglutaminase-like superfamily IUJ49_07450 PF13559 Domain of unknown function (DUF4129) IUJ49_07450 PF11992 Domain of unknown function (DUF3488) IUJ49_07460 PF07726 ATPase family associated with various cellular activities (AAA) IUJ49_07460 PF17863 AAA lid domain IUJ49_07465 PF00144 Beta-lactamase IUJ49_07470 PF00854 POT family IUJ49_07475 PF03652 Holliday junction resolvase IUJ49_07480 PF02622 Uncharacterized ACR, COG1678 IUJ49_07485 PF00672 HAMP domain IUJ49_07485 PF12729 Four helix bundle sensory module for signal transduction IUJ49_07485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_07490 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain IUJ49_07490 PF02951 Prokaryotic glutathione synthetase, N-terminal domain IUJ49_07495 PF04452 RNA methyltransferase IUJ49_07500 PF04231 Endonuclease I IUJ49_07505 PF17283 SprT-like zinc ribbon domain IUJ49_07505 PF10263 SprT-like family IUJ49_07510 PF02772 S-adenosylmethionine synthetase, central domain IUJ49_07510 PF00438 S-adenosylmethionine synthetase, N-terminal domain IUJ49_07510 PF02773 S-adenosylmethionine synthetase, C-terminal domain IUJ49_07515 PF00456 Transketolase, thiamine diphosphate binding domain IUJ49_07515 PF02779 Transketolase, pyrimidine binding domain IUJ49_07515 PF02780 Transketolase, C-terminal domain IUJ49_07525 PF01042 Endoribonuclease L-PSP IUJ49_07530 PF01965 DJ-1/PfpI family IUJ49_07535 PF03702 Anhydro-N-acetylmuramic acid kinase IUJ49_07540 PF01476 LysM domain IUJ49_07540 PF01551 Peptidase family M23 IUJ49_07540 PF08525 Opacity-associated protein A N-terminal motif IUJ49_07545 PF00579 tRNA synthetases class I (W and Y) IUJ49_07550 PF01204 Trehalase IUJ49_07560 PF01161 Phosphatidylethanolamine-binding protein IUJ49_07565 PF00709 Adenylosuccinate synthetase IUJ49_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_07570 PF03466 LysR substrate binding domain IUJ49_07580 PF00155 Aminotransferase class I and II IUJ49_07585 PF07690 Major Facilitator Superfamily IUJ49_07590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_07590 PF03466 LysR substrate binding domain IUJ49_07595 PF00106 short chain dehydrogenase IUJ49_07600 PF01343 Peptidase family S49 IUJ49_07600 PF08496 Peptidase family S49 N-terminal IUJ49_07605 PF04996 Succinylarginine dihydrolase IUJ49_07610 PF08272 Topoisomerase I zinc-ribbon-like IUJ49_07610 PF01131 DNA topoisomerase IUJ49_07610 PF01751 Toprim domain IUJ49_07610 PF01396 Topoisomerase DNA binding C4 zinc finger IUJ49_07625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_07625 PF08447 PAS fold IUJ49_07630 PF00728 Glycosyl hydrolase family 20, catalytic domain IUJ49_07630 PF02838 Glycosyl hydrolase family 20, domain 2 IUJ49_07635 PF01869 BadF/BadG/BcrA/BcrD ATPase family IUJ49_07645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_07645 PF00005 ABC transporter IUJ49_07650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_07650 PF00005 ABC transporter IUJ49_07655 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_07655 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_07660 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_07665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_07670 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_07670 PF09308 LuxQ, periplasmic IUJ49_07670 PF00072 Response regulator receiver domain IUJ49_07690 PF10725 Protein of unknown function (DUF2517) IUJ49_07700 PF05114 Protein of unknown function (DUF692) IUJ49_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_07720 PF13426 PAS domain IUJ49_07720 PF08447 PAS fold IUJ49_07730 PF04632 Fusaric acid resistance protein family IUJ49_07735 PF00994 Probable molybdopterin binding domain IUJ49_07735 PF03454 MoeA C-terminal region (domain IV) IUJ49_07735 PF03453 MoeA N-terminal region (domain I and II) IUJ49_07740 PF12804 MobA-like NTP transferase domain IUJ49_07745 PF00005 ABC transporter IUJ49_07750 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_07755 PF12849 PBP superfamily domain IUJ49_07760 PF02954 Bacterial regulatory protein, Fis family IUJ49_07760 PF00158 Sigma-54 interaction domain IUJ49_07760 PF00072 Response regulator receiver domain IUJ49_07765 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_07765 PF00989 PAS fold IUJ49_07765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_07770 PF12727 PBP superfamily domain IUJ49_07770 PF12728 Helix-turn-helix domain IUJ49_07775 PF02634 FdhD/NarQ family IUJ49_07810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ49_07810 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ49_07810 PF01568 Molydopterin dinucleotide binding domain IUJ49_07810 PF00384 Molybdopterin oxidoreductase IUJ49_07810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_07810 PF12838 4Fe-4S dicluster domain IUJ49_07810 PF12838 4Fe-4S dicluster domain IUJ49_07810 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_07810 PF01568 Molydopterin dinucleotide binding domain IUJ49_07810 PF00384 Molybdopterin oxidoreductase IUJ49_07815 PF13247 4Fe-4S dicluster domain IUJ49_07825 PF00072 Response regulator receiver domain IUJ49_07830 PF03949 Malic enzyme, NAD binding domain IUJ49_07830 PF00390 Malic enzyme, N-terminal domain IUJ49_07835 PF00860 Permease family IUJ49_07840 PF10282 Lactonase, 7-bladed beta-propeller IUJ49_07850 PF00924 Mechanosensitive ion channel IUJ49_07850 PF12795 Mechanosensitive ion channel porin domain IUJ49_07850 PF12794 Mechanosensitive ion channel inner membrane domain 1 IUJ49_07855 PF02887 Pyruvate kinase, alpha/beta domain IUJ49_07855 PF00224 Pyruvate kinase, barrel domain IUJ49_07865 PF04151 Bacterial pre-peptidase C-terminal domain IUJ49_07865 PF04389 Peptidase family M28 IUJ49_07870 PF02254 TrkA-N domain IUJ49_07870 PF00999 Sodium/hydrogen exchanger family IUJ49_07880 PF04381 Putative exonuclease, RdgC IUJ49_07890 PF00149 Calcineurin-like phosphoesterase IUJ49_07890 PF12320 Type 5 capsule protein repressor C-terminal domain IUJ49_07895 PF13476 AAA domain IUJ49_07910 PF01292 Prokaryotic cytochrome b561 IUJ49_07920 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_07925 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ49_07930 PF05524 PEP-utilising enzyme, N-terminal IUJ49_07930 PF00391 PEP-utilising enzyme, mobile domain IUJ49_07930 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ49_07935 PF00381 PTS HPr component phosphorylation site IUJ49_07940 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_07945 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_07945 PF07724 AAA domain (Cdc48 subfamily) IUJ49_07945 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_07945 PF17871 AAA lid domain IUJ49_07945 PF02861 Clp amino terminal domain, pathogenicity island component IUJ49_07955 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ49_07955 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ49_07960 PF01980 tRNA-methyltransferase O IUJ49_07960 PF18389 TrmO C-terminal domain IUJ49_07980 PF00005 ABC transporter IUJ49_07980 PF00664 ABC transporter transmembrane region IUJ49_07985 PF00664 ABC transporter transmembrane region IUJ49_07985 PF00005 ABC transporter IUJ49_08000 PF00072 Response regulator receiver domain IUJ49_08000 PF00486 Transcriptional regulatory protein, C terminal IUJ49_08010 PF03737 Aldolase/RraA IUJ49_08025 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) IUJ49_08030 PF00588 SpoU rRNA Methylase family IUJ49_08035 PF01842 ACT domain IUJ49_08035 PF00696 Amino acid kinase family IUJ49_08035 PF13840 ACT domain IUJ49_08035 PF03447 Homoserine dehydrogenase, NAD binding domain IUJ49_08035 PF00742 Homoserine dehydrogenase IUJ49_08040 PF00288 GHMP kinases N terminal domain IUJ49_08040 PF08544 GHMP kinases C terminal IUJ49_08045 PF14821 Threonine synthase N terminus IUJ49_08045 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_08050 PF13474 SnoaL-like domain IUJ49_08055 PF00005 ABC transporter IUJ49_08055 PF12848 ABC transporter IUJ49_08070 PF01048 Phosphorylase superfamily IUJ49_08085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_08085 PF00989 PAS fold IUJ49_08085 PF00072 Response regulator receiver domain IUJ49_08085 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_08085 PF01627 Hpt domain IUJ49_08085 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_08090 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase IUJ49_08095 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_08095 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ49_08100 PF02690 Na+/Pi-cotransporter IUJ49_08110 PF13520 Amino acid permease IUJ49_08120 PF00324 Amino acid permease IUJ49_08125 PF00202 Aminotransferase class-III IUJ49_08130 PF00171 Aldehyde dehydrogenase family IUJ49_08135 PF07883 Cupin domain IUJ49_08135 PF01381 Helix-turn-helix IUJ49_08140 PF01266 FAD dependent oxidoreductase IUJ49_08155 PF00816 H-NS histone family IUJ49_08160 PF00793 DAHP synthetase I family IUJ49_08165 PF04954 Siderophore-interacting protein IUJ49_08165 PF08021 Siderophore-interacting FAD-binding domain IUJ49_08170 PF02321 Outer membrane efflux protein IUJ49_08175 PF00005 ABC transporter IUJ49_08175 PF12704 MacB-like periplasmic core domain IUJ49_08175 PF02687 FtsX-like permease family IUJ49_08180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_08190 PF01368 DHH family IUJ49_08190 PF02833 DHHA2 domain IUJ49_08195 PF02463 RecF/RecN/SMC N terminal domain IUJ49_08200 PF01513 ATP-NAD kinase IUJ49_08205 PF01025 GrpE IUJ49_08210 PF00012 Hsp70 protein IUJ49_08215 PF00684 DnaJ central domain IUJ49_08215 PF01556 DnaJ C terminal domain IUJ49_08215 PF00226 DnaJ domain IUJ49_08220 PF03448 MgtE intracellular N domain IUJ49_08220 PF01769 Divalent cation transporter IUJ49_08220 PF00571 CBS domain IUJ49_08230 PF02308 MgtC family IUJ49_08250 PF04143 Sulphur transport IUJ49_08265 PF00873 AcrB/AcrD/AcrF family IUJ49_08270 PF00563 EAL domain IUJ49_08270 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_08270 PF03707 Bacterial signalling protein N terminal repeat IUJ49_08275 PF03099 Biotin/lipoate A/B protein ligase family IUJ49_08275 PF10437 Bacterial lipoate protein ligase C-terminus IUJ49_08295 PF00873 AcrB/AcrD/AcrF family IUJ49_08300 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_08300 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_08310 PF00873 AcrB/AcrD/AcrF family IUJ49_08315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_08320 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ49_08335 PF07690 Major Facilitator Superfamily IUJ49_08340 PF02424 ApbE family IUJ49_08345 PF00127 Copper binding proteins, plastocyanin/azurin family IUJ49_08365 PF01156 Inosine-uridine preferring nucleoside hydrolase IUJ49_08375 PF00034 Cytochrome c IUJ49_08375 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ49_08385 PF06481 COX Aromatic Rich Motif IUJ49_08385 PF00116 Cytochrome C oxidase subunit II, periplasmic domain IUJ49_08390 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ49_08395 PF00510 Cytochrome c oxidase subunit III IUJ49_08400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV IUJ49_08405 PF01040 UbiA prenyltransferase family IUJ49_08410 PF07690 Major Facilitator Superfamily IUJ49_08425 PF05656 Protein of unknown function (DUF805) IUJ49_08440 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ49_08440 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ49_08440 PF07670 Nucleoside recognition IUJ49_08490 PF00290 Tryptophan synthase alpha chain IUJ49_08495 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_08500 PF00218 Indole-3-glycerol phosphate synthase IUJ49_08500 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase IUJ49_08505 PF00591 Glycosyl transferase family, a/b domain IUJ49_08505 PF02885 Glycosyl transferase family, helical bundle domain IUJ49_08510 PF02885 Glycosyl transferase family, helical bundle domain IUJ49_08510 PF00591 Glycosyl transferase family, a/b domain IUJ49_08510 PF00117 Glutamine amidotransferase class-I IUJ49_08515 PF04715 Anthranilate synthase component I, N terminal region IUJ49_08515 PF00425 chorismate binding enzyme IUJ49_08520 PF02811 PHP domain IUJ49_08525 PF01300 Telomere recombination IUJ49_08530 PF02616 Segregation and condensation protein ScpA IUJ49_08535 PF04079 Segregation and condensation complex subunit ScpB IUJ49_08540 PF01479 S4 domain IUJ49_08540 PF00849 RNA pseudouridylate synthase IUJ49_08560 PF00440 Bacterial regulatory proteins, tetR family IUJ49_08560 PF08361 MAATS-type transcriptional repressor, C-terminal region IUJ49_08565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_08565 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_08570 PF00873 AcrB/AcrD/AcrF family IUJ49_08575 PF02321 Outer membrane efflux protein IUJ49_08580 PF16363 GDP-mannose 4,6 dehydratase IUJ49_08585 PF00483 Nucleotidyl transferase IUJ49_08590 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase IUJ49_08605 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_08610 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_08630 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_08640 PF01050 Mannose-6-phosphate isomerase IUJ49_08640 PF00483 Nucleotidyl transferase IUJ49_08645 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ49_08645 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ49_08645 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ49_08645 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ49_08650 PF02397 Bacterial sugar transferase IUJ49_08655 PF04321 RmlD substrate binding domain IUJ49_08660 PF02706 Chain length determinant protein IUJ49_08670 PF04337 Protein of unknown function, DUF480 IUJ49_08675 PF04434 SWIM zinc finger IUJ49_08675 PF00176 SNF2 family N-terminal domain IUJ49_08675 PF00271 Helicase conserved C-terminal domain IUJ49_08680 PF05472 DNA replication terminus site-binding protein (Ter protein) IUJ49_08690 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family IUJ49_08695 PF00676 Dehydrogenase E1 component IUJ49_08700 PF02779 Transketolase, pyrimidine binding domain IUJ49_08700 PF02780 Transketolase, C-terminal domain IUJ49_08705 PF02817 e3 binding domain IUJ49_08705 PF00364 Biotin-requiring enzyme IUJ49_08705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ49_08710 PF00313 'Cold-shock' DNA-binding domain IUJ49_08735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_08740 PF00892 EamA-like transporter family IUJ49_08745 PF08220 DeoR-like helix-turn-helix domain IUJ49_08745 PF00455 DeoR C terminal sensor domain IUJ49_08750 PF01228 Glycine radical IUJ49_08750 PF02901 Pyruvate formate lyase-like IUJ49_08755 PF04055 Radical SAM superfamily IUJ49_08760 PF00923 Transaldolase/Fructose-6-phosphate aldolase IUJ49_08770 PF01966 HD domain IUJ49_08770 PF11871 Domain of unknown function (DUF3391) IUJ49_08775 PF01479 S4 domain IUJ49_08775 PF00849 RNA pseudouridylate synthase IUJ49_08785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_08790 PF12850 Calcineurin-like phosphoesterase superfamily domain IUJ49_08805 PF13144 Chaperone for flagella basal body P-ring formation IUJ49_08810 PF00072 Response regulator receiver domain IUJ49_08810 PF01584 CheW-like domain IUJ49_08815 PF03705 CheR methyltransferase, all-alpha domain IUJ49_08815 PF01739 CheR methyltransferase, SAM binding domain IUJ49_08820 PF00460 Flagella basal body rod protein IUJ49_08825 PF00460 Flagella basal body rod protein IUJ49_08825 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_08835 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_08835 PF07559 Flagellar basal body protein FlaE IUJ49_08835 PF00460 Flagella basal body rod protein IUJ49_08840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_08840 PF00460 Flagella basal body rod protein IUJ49_08845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_08845 PF00460 Flagella basal body rod protein IUJ49_08850 PF02107 Flagellar L-ring protein IUJ49_08855 PF02119 Flagellar P-ring protein IUJ49_08860 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase IUJ49_08860 PF10135 Rod binding protein IUJ49_08865 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_08865 PF00460 Flagella basal body rod protein IUJ49_08870 PF00669 Bacterial flagellin N-terminal helical region IUJ49_08875 PF00571 CBS domain IUJ49_08875 PF03448 MgtE intracellular N domain IUJ49_08875 PF01769 Divalent cation transporter IUJ49_08880 PF02541 Ppx/GppA phosphatase family IUJ49_08885 PF13090 Polyphosphate kinase C-terminal domain 2 IUJ49_08885 PF17941 Polyphosphate kinase C-terminal domain 1 IUJ49_08885 PF13089 Polyphosphate kinase N-terminal domain IUJ49_08885 PF02503 Polyphosphate kinase middle domain IUJ49_08890 PF01842 ACT domain IUJ49_08900 PF02954 Bacterial regulatory protein, Fis family IUJ49_08900 PF00158 Sigma-54 interaction domain IUJ49_08900 PF06490 Flagellar regulatory protein FleQ IUJ49_08905 PF13188 PAS domain IUJ49_08905 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_08905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_08910 PF02954 Bacterial regulatory protein, Fis family IUJ49_08910 PF00072 Response regulator receiver domain IUJ49_08910 PF00158 Sigma-54 interaction domain IUJ49_08915 PF01784 NIF3 (NGG1p interacting factor 3) IUJ49_08920 PF00551 Formyl transferase IUJ49_08925 PF00586 AIR synthase related protein, N-terminal domain IUJ49_08925 PF02769 AIR synthase related protein, C-terminal domain IUJ49_08940 PF00308 Bacterial dnaA protein IUJ49_08945 PF00463 Isocitrate lyase family IUJ49_08950 PF01274 Malate synthase IUJ49_08965 PF14437 MafB19-like deaminase IUJ49_08970 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_08975 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_08980 PF00005 ABC transporter IUJ49_08985 PF01895 PhoU domain IUJ49_08990 PF01595 Cyclin M transmembrane N-terminal domain IUJ49_08990 PF00571 CBS domain IUJ49_08990 PF03471 Transporter associated domain IUJ49_09000 PF02574 Homocysteine S-methyltransferase IUJ49_09000 PF00809 Pterin binding enzyme IUJ49_09000 PF02607 B12 binding domain IUJ49_09000 PF02310 B12 binding domain IUJ49_09000 PF02965 Vitamin B12 dependent methionine synthase, activation domain IUJ49_09005 PF13520 Amino acid permease IUJ49_09010 PF04116 Fatty acid hydroxylase superfamily IUJ49_09025 PF00005 ABC transporter IUJ49_09030 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_09035 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_09040 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_09045 PF07690 Major Facilitator Superfamily IUJ49_09050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_09050 PF07730 Histidine kinase IUJ49_09050 PF05231 MASE1 IUJ49_09055 PF00196 Bacterial regulatory proteins, luxR family IUJ49_09055 PF00072 Response regulator receiver domain IUJ49_09060 PF14760 Rnk N-terminus IUJ49_09060 PF01272 Transcription elongation factor, GreA/GreB, C-term IUJ49_09075 PF00245 Alkaline phosphatase IUJ49_09080 PF00245 Alkaline phosphatase IUJ49_09085 PF01926 50S ribosome-binding GTPase IUJ49_09090 PF07690 Major Facilitator Superfamily IUJ49_09095 PF00850 Histone deacetylase domain IUJ49_09105 PF13307 Helicase C-terminal domain IUJ49_09105 PF06733 DEAD_2 IUJ49_09110 PF13609 Gram-negative porin IUJ49_09120 PF00155 Aminotransferase class I and II IUJ49_09125 PF05872 Bacterial protein of unknown function (DUF853) IUJ49_09140 PF00753 Metallo-beta-lactamase superfamily IUJ49_09140 PF03772 Competence protein IUJ49_09145 PF00005 ABC transporter IUJ49_09145 PF00664 ABC transporter transmembrane region IUJ49_09150 PF02606 Tetraacyldisaccharide-1-P 4'-kinase IUJ49_09155 PF03966 Trm112p-like protein IUJ49_09160 PF02348 Cytidylyltransferase IUJ49_09165 PF00196 Bacterial regulatory proteins, luxR family IUJ49_09165 PF00072 Response regulator receiver domain IUJ49_09170 PF01541 GIY-YIG catalytic domain IUJ49_09170 PF02151 UvrB/uvrC motif IUJ49_09170 PF08459 UvrC Helix-hairpin-helix N-terminal IUJ49_09175 PF01066 CDP-alcohol phosphatidyltransferase IUJ49_09205 PF00717 Peptidase S24-like IUJ49_09210 PF00884 Sulfatase IUJ49_09215 PF02899 Phage integrase, N-terminal SAM-like domain IUJ49_09215 PF00589 Phage integrase family IUJ49_09225 PF13426 PAS domain IUJ49_09225 PF08447 PAS fold IUJ49_09225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_09235 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB IUJ49_09240 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) IUJ49_09260 PF00037 4Fe-4S binding domain IUJ49_09260 PF13247 4Fe-4S dicluster domain IUJ49_09265 PF03916 Polysulphide reductase, NrfD IUJ49_09270 PF00149 Calcineurin-like phosphoesterase IUJ49_09280 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUJ49_09285 PF01406 tRNA synthetases class I (C) catalytic domain IUJ49_09285 PF09190 DALR domain IUJ49_09300 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_09300 PF13185 GAF domain IUJ49_09330 PF01169 Uncharacterized protein family UPF0016 IUJ49_09335 PF01253 Translation initiation factor SUI1 IUJ49_09345 PF07670 Nucleoside recognition IUJ49_09345 PF02421 Ferrous iron transport protein B IUJ49_09345 PF07664 Ferrous iron transport protein B C terminus IUJ49_09360 PF00483 Nucleotidyl transferase IUJ49_09365 PF00437 Type II/IV secretion system protein IUJ49_09375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_09375 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_09375 PF01627 Hpt domain IUJ49_09375 PF00989 PAS fold IUJ49_09375 PF00072 Response regulator receiver domain IUJ49_09375 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_09380 PF01032 FecCD transport family IUJ49_09385 PF00005 ABC transporter IUJ49_09390 PF00583 Acetyltransferase (GNAT) family IUJ49_09395 PF00793 DAHP synthetase I family IUJ49_09400 PF01219 Prokaryotic diacylglycerol kinase IUJ49_09405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_09405 PF01842 ACT domain IUJ49_09405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ49_09410 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) IUJ49_09415 PF01812 5-formyltetrahydrofolate cyclo-ligase family IUJ49_09425 PF05173 Dihydrodipicolinate reductase, C-terminus IUJ49_09425 PF01113 Dihydrodipicolinate reductase, N-terminus IUJ49_09430 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain IUJ49_09430 PF00117 Glutamine amidotransferase class-I IUJ49_09435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ49_09435 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain IUJ49_09435 PF02142 MGS-like domain IUJ49_09440 PF08502 LeuA allosteric (dimerisation) domain IUJ49_09440 PF00682 HMGL-like IUJ49_09445 PF07759 Protein of unknown function (DUF1615) IUJ49_09450 PF08378 Nuclease-related domain IUJ49_09470 PF13302 Acetyltransferase (GNAT) domain IUJ49_09475 PF00270 DEAD/DEAH box helicase IUJ49_09475 PF00271 Helicase conserved C-terminal domain IUJ49_09485 PF14521 Lysine-specific metallo-endopeptidase IUJ49_09500 PF09278 MerR, DNA binding IUJ49_09500 PF00376 MerR family regulatory protein IUJ49_09515 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_09520 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_09525 PF00005 ABC transporter IUJ49_09530 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ49_09530 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_09535 PF00310 Glutamine amidotransferases class-II IUJ49_09535 PF04898 Glutamate synthase central domain IUJ49_09535 PF01493 GXGXG motif IUJ49_09535 PF01645 Conserved region in glutamate synthase IUJ49_09540 PF04055 Radical SAM superfamily IUJ49_09540 PF16199 Radical_SAM C-terminal domain IUJ49_09545 PF00664 ABC transporter transmembrane region IUJ49_09545 PF00005 ABC transporter IUJ49_09545 PF03412 Peptidase C39 family IUJ49_09595 PF00324 Amino acid permease IUJ49_09605 PF03618 Kinase/pyrophosphorylase IUJ49_09610 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain IUJ49_09610 PF00391 PEP-utilising enzyme, mobile domain IUJ49_09610 PF02896 PEP-utilising enzyme, TIM barrel domain IUJ49_09620 PF00933 Glycosyl hydrolase family 3 N terminal domain IUJ49_09620 PF01915 Glycosyl hydrolase family 3 C-terminal domain IUJ49_09620 PF14310 Fibronectin type III-like domain IUJ49_09630 PF00082 Subtilase family IUJ49_09630 PF01483 Proprotein convertase P-domain IUJ49_09650 PF03180 NLPA lipoprotein IUJ49_09655 PF01569 PAP2 superfamily IUJ49_09660 PF11890 Domain of unknown function (DUF3410) IUJ49_09660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain IUJ49_09660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_09665 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ49_09665 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ49_09675 PF01416 tRNA pseudouridine synthase IUJ49_09680 PF01039 Carboxyl transferase domain IUJ49_09680 PF17848 Acetyl-coA carboxylase zinc finger domain IUJ49_09685 PF08245 Mur ligase middle domain IUJ49_09685 PF02875 Mur ligase family, glutamate ligase domain IUJ49_09690 PF05036 Sporulation related domain IUJ49_09695 PF04358 DsrC like protein IUJ49_09700 PF12805 FUSC-like inner membrane protein yccS IUJ49_09705 PF01027 Inhibitor of apoptosis-promoting Bax1 IUJ49_09720 PF01312 FlhB HrpN YscU SpaS Family IUJ49_09725 PF01311 Bacterial export proteins, family 1 IUJ49_09730 PF01313 Bacterial export proteins, family 3 IUJ49_09735 PF00813 FliP family IUJ49_09740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ49_09745 PF02120 Flagellar hook-length control protein FliK IUJ49_09755 PF18269 T3SS EscN ATPase C-terminal domain IUJ49_09755 PF02874 ATP synthase alpha/beta family, beta-barrel domain IUJ49_09755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_09760 PF07201 HrpJ-like domain IUJ49_09765 PF09059 TyeA IUJ49_09775 PF09474 Type III secretion system YscX (type_III_YscX) IUJ49_09785 PF00771 FHIPEP family IUJ49_09790 PF09621 Type III secretion system regulator (LcrR) IUJ49_09800 PF04792 V antigen (LcrV) protein IUJ49_09805 PF07720 Tetratricopeptide repeat IUJ49_09810 PF04888 Secretion system effector C (SseC) like family IUJ49_09815 PF05844 YopD protein IUJ49_09820 PF05932 Tir chaperone protein (CesT) family IUJ49_09835 PF12833 Helix-turn-helix domain IUJ49_09840 PF16806 Antiactivator protein ExsD IUJ49_09850 PF03958 Bacterial type II/III secretion system short domain IUJ49_09850 PF00263 Bacterial type II and III secretion system protein IUJ49_09855 PF16693 Inner membrane component of T3SS, periplasmic domain IUJ49_09855 PF16697 Inner membrane component of T3SS, cytoplasmic domain IUJ49_09865 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF IUJ49_09870 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) IUJ49_09875 PF09025 YopR, type III needle-polymerisation regulator IUJ49_09880 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI IUJ49_09885 PF01514 Secretory protein of YscJ/FliF family IUJ49_09895 PF02108 Flagellar assembly protein FliH IUJ49_09910 PF08019 Phosphoethanolamine transferase EptA/EptB IUJ49_09910 PF00884 Sulfatase IUJ49_09915 PF03706 Lysylphosphatidylglycerol synthase TM region IUJ49_09915 PF09924 Uncharacterised conserved protein (DUF2156) IUJ49_09925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_09925 PF08447 PAS fold IUJ49_09930 PF13426 PAS domain IUJ49_09930 PF00563 EAL domain IUJ49_09930 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_09935 PF00849 RNA pseudouridylate synthase IUJ49_09945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_09950 PF04209 homogentisate 1,2-dioxygenase IUJ49_09960 PF02798 Glutathione S-transferase, N-terminal domain IUJ49_09960 PF14497 Glutathione S-transferase, C-terminal domain IUJ49_09965 PF00043 Glutathione S-transferase, C-terminal domain IUJ49_09965 PF13417 Glutathione S-transferase, N-terminal domain IUJ49_09975 PF13537 Glutamine amidotransferase domain IUJ49_09975 PF00733 Asparagine synthase IUJ49_09985 PF00999 Sodium/hydrogen exchanger family IUJ49_09985 PF02254 TrkA-N domain IUJ49_09990 PF13344 Haloacid dehalogenase-like hydrolase IUJ49_09995 PF00962 Adenosine/AMP deaminase IUJ49_10000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family IUJ49_10005 PF03471 Transporter associated domain IUJ49_10005 PF03741 Integral membrane protein TerC family IUJ49_10015 PF02913 FAD linked oxidases, C-terminal domain IUJ49_10015 PF13183 4Fe-4S dicluster domain IUJ49_10015 PF01565 FAD binding domain IUJ49_10025 PF03061 Thioesterase superfamily IUJ49_10030 PF03880 DbpA RNA binding domain IUJ49_10030 PF00270 DEAD/DEAH box helicase IUJ49_10030 PF00271 Helicase conserved C-terminal domain IUJ49_10035 PF03553 Na+/H+ antiporter family IUJ49_10035 PF13726 Na+-H+ antiporter family IUJ49_10040 PF00929 Exonuclease IUJ49_10045 PF12729 Four helix bundle sensory module for signal transduction IUJ49_10045 PF00672 HAMP domain IUJ49_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10050 PF18393 MotY N-terminal domain IUJ49_10050 PF00691 OmpA family IUJ49_10055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_10060 PF10576 Iron-sulfur binding domain of endonuclease III IUJ49_10060 PF00633 Helix-hairpin-helix motif IUJ49_10060 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ49_10065 PF02508 Rnf-Nqr subunit, membrane protein IUJ49_10070 PF04205 FMN-binding domain IUJ49_10075 PF03116 NQR2, RnfD, RnfE family IUJ49_10080 PF13375 RnfC Barrel sandwich hybrid domain IUJ49_10080 PF12838 4Fe-4S dicluster domain IUJ49_10080 PF10531 SLBB domain IUJ49_10080 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUJ49_10085 PF04060 Putative Fe-S cluster IUJ49_10090 PF02508 Rnf-Nqr subunit, membrane protein IUJ49_10095 PF00892 EamA-like transporter family IUJ49_10100 PF08447 PAS fold IUJ49_10100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10100 PF13426 PAS domain IUJ49_10105 PF12241 Trans-2-enoyl-CoA reductase catalytic region IUJ49_10105 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase IUJ49_10105 PF07055 Enoyl reductase FAD binding domain IUJ49_10110 PF03606 C4-dicarboxylate anaerobic carrier IUJ49_10115 PF00155 Aminotransferase class I and II IUJ49_10125 PF00462 Glutaredoxin IUJ49_10130 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family IUJ49_10135 PF00271 Helicase conserved C-terminal domain IUJ49_10135 PF04851 Type III restriction enzyme, res subunit IUJ49_10140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_10140 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_10145 PF11742 Protein of unknown function (DUF3302) IUJ49_10150 PF02554 Carbon starvation protein CstA IUJ49_10155 PF04397 LytTr DNA-binding domain IUJ49_10155 PF00072 Response regulator receiver domain IUJ49_10160 PF07694 5TMR of 5TMR-LYT IUJ49_10160 PF06580 Histidine kinase IUJ49_10165 PF01966 HD domain IUJ49_10170 PF00465 Iron-containing alcohol dehydrogenase IUJ49_10170 PF00171 Aldehyde dehydrogenase family IUJ49_10180 PF01914 MarC family integral membrane protein IUJ49_10185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_10190 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_10195 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_10195 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_10200 PF00005 ABC transporter IUJ49_10200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_10205 PF00005 ABC transporter IUJ49_10205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_10210 PF03741 Integral membrane protein TerC family IUJ49_10215 PF01168 Alanine racemase, N-terminal domain IUJ49_10215 PF00842 Alanine racemase, C-terminal domain IUJ49_10225 PF00375 Sodium:dicarboxylate symporter family IUJ49_10240 PF01979 Amidohydrolase family IUJ49_10250 PF00672 HAMP domain IUJ49_10250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10255 PF01230 HIT domain IUJ49_10290 PF13721 SecD export protein N-terminal TM region IUJ49_10290 PF07549 SecD/SecF GG Motif IUJ49_10290 PF02355 Protein export membrane protein IUJ49_10295 PF07549 SecD/SecF GG Motif IUJ49_10295 PF02355 Protein export membrane protein IUJ49_10305 PF05661 Protein of unknown function (DUF808) IUJ49_10310 PF01432 Peptidase family M3 IUJ49_10310 PF08439 Oligopeptidase F IUJ49_10315 PF08439 Oligopeptidase F IUJ49_10315 PF01432 Peptidase family M3 IUJ49_10320 PF00860 Permease family IUJ49_10325 PF05728 Uncharacterised protein family (UPF0227) IUJ49_10330 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_10350 PF01906 Putative heavy-metal-binding IUJ49_10360 PF02016 LD-carboxypeptidase N-terminal domain IUJ49_10360 PF17676 LD-carboxypeptidase C-terminal domain IUJ49_10365 PF00884 Sulfatase IUJ49_10375 PF00696 Amino acid kinase family IUJ49_10375 PF01842 ACT domain IUJ49_10380 PF00583 Acetyltransferase (GNAT) family IUJ49_10380 PF00696 Amino acid kinase family IUJ49_10385 PF01625 Peptide methionine sulfoxide reductase IUJ49_10405 PF00561 alpha/beta hydrolase fold IUJ49_10410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_10420 PF03466 LysR substrate binding domain IUJ49_10430 PF02754 Cysteine-rich domain IUJ49_10435 PF02589 LUD domain IUJ49_10435 PF13183 4Fe-4S dicluster domain IUJ49_10435 PF11870 Domain of unknown function (DUF3390) IUJ49_10440 PF02589 LUD domain IUJ49_10445 PF02913 FAD linked oxidases, C-terminal domain IUJ49_10445 PF01565 FAD binding domain IUJ49_10480 PF00842 Alanine racemase, C-terminal domain IUJ49_10480 PF01168 Alanine racemase, N-terminal domain IUJ49_10485 PF00672 HAMP domain IUJ49_10485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10485 PF12729 Four helix bundle sensory module for signal transduction IUJ49_10490 PF00563 EAL domain IUJ49_10490 PF03707 Bacterial signalling protein N terminal repeat IUJ49_10490 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_10495 PF01339 CheB methylesterase IUJ49_10495 PF00072 Response regulator receiver domain IUJ49_10500 PF01739 CheR methyltransferase, SAM binding domain IUJ49_10500 PF03705 CheR methyltransferase, all-alpha domain IUJ49_10505 PF01584 CheW-like domain IUJ49_10510 PF17202 Single cache domain 3 IUJ49_10510 PF00672 HAMP domain IUJ49_10510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10515 PF01584 CheW-like domain IUJ49_10515 PF09078 CheY binding IUJ49_10515 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ49_10515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_10515 PF01627 Hpt domain IUJ49_10525 PF00072 Response regulator receiver domain IUJ49_10530 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal IUJ49_10530 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUJ49_10535 PF13247 4Fe-4S dicluster domain IUJ49_10540 PF03916 Polysulphide reductase, NrfD IUJ49_10545 PF00374 Nickel-dependent hydrogenase IUJ49_10550 PF01750 Hydrogenase maturation protease IUJ49_10555 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE IUJ49_10560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_10565 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_10570 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_10570 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_10575 PF00005 ABC transporter IUJ49_10580 PF08402 TOBE domain IUJ49_10580 PF00005 ABC transporter IUJ49_10585 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ49_10590 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA IUJ49_10595 PF02769 AIR synthase related protein, C-terminal domain IUJ49_10595 PF00586 AIR synthase related protein, N-terminal domain IUJ49_10600 PF01924 Hydrogenase formation hypA family IUJ49_10605 PF01455 HupF/HypC family IUJ49_10610 PF00708 Acylphosphatase IUJ49_10610 PF17788 HypF Kae1-like domain IUJ49_10610 PF01300 Telomere recombination IUJ49_10610 PF07503 HypF finger IUJ49_10615 PF00009 Elongation factor Tu GTP binding domain IUJ49_10615 PF03144 Elongation factor Tu domain 2 IUJ49_10615 PF09105 Elongation factor SelB, winged helix IUJ49_10615 PF09106 Elongation factor SelB, winged helix IUJ49_10615 PF09107 Elongation factor SelB, winged helix IUJ49_10620 PF12390 Selenocysteine synthase N terminal IUJ49_10620 PF03841 L-seryl-tRNA selenium transferase IUJ49_10630 PF01750 Hydrogenase maturation protease IUJ49_10635 PF07450 Formate hydrogenlyase maturation protein HycH IUJ49_10640 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUJ49_10645 PF12838 4Fe-4S dicluster domain IUJ49_10650 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IUJ49_10650 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IUJ49_10650 PF00374 Nickel-dependent hydrogenase IUJ49_10655 PF00146 NADH dehydrogenase IUJ49_10660 PF00361 Proton-conducting membrane transporter IUJ49_10665 PF12798 4Fe-4S binding domain IUJ49_10665 PF00037 4Fe-4S binding domain IUJ49_10670 PF02705 K+ potassium transporter IUJ49_10680 PF13247 4Fe-4S dicluster domain IUJ49_10680 PF12800 4Fe-4S binding domain IUJ49_10695 PF01590 GAF domain IUJ49_10695 PF02954 Bacterial regulatory protein, Fis family IUJ49_10695 PF00158 Sigma-54 interaction domain IUJ49_10700 PF02634 FdhD/NarQ family IUJ49_10705 PF13662 Toprim domain IUJ49_10705 PF02132 RecR protein IUJ49_10710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_10710 PF00183 Hsp90 protein IUJ49_10715 PF05191 Adenylate kinase, active site lid IUJ49_10720 PF00762 Ferrochelatase IUJ49_10730 PF00294 pfkB family carbohydrate kinase IUJ49_10745 PF00563 EAL domain IUJ49_10745 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_10745 PF03707 Bacterial signalling protein N terminal repeat IUJ49_10750 PF00483 Nucleotidyl transferase IUJ49_10760 PF07273 Protein of unknown function (DUF1439) IUJ49_10765 PF00425 chorismate binding enzyme IUJ49_10770 PF00501 AMP-binding enzyme IUJ49_10770 PF13193 AMP-binding enzyme C-terminal domain IUJ49_10775 PF00857 Isochorismatase family IUJ49_10775 PF00550 Phosphopantetheine attachment site IUJ49_10780 PF00975 Thioesterase domain IUJ49_10780 PF00668 Condensation domain IUJ49_10780 PF13193 AMP-binding enzyme C-terminal domain IUJ49_10780 PF00501 AMP-binding enzyme IUJ49_10780 PF00550 Phosphopantetheine attachment site IUJ49_10790 PF13193 AMP-binding enzyme C-terminal domain IUJ49_10790 PF00550 Phosphopantetheine attachment site IUJ49_10790 PF07993 Male sterility protein IUJ49_10790 PF00501 AMP-binding enzyme IUJ49_10790 PF00668 Condensation domain IUJ49_10795 PF00975 Thioesterase domain IUJ49_10795 PF00668 Condensation domain IUJ49_10795 PF13193 AMP-binding enzyme C-terminal domain IUJ49_10795 PF00550 Phosphopantetheine attachment site IUJ49_10795 PF00501 AMP-binding enzyme IUJ49_10800 PF01497 Periplasmic binding protein IUJ49_10805 PF17837 4'-phosphopantetheinyl transferase N-terminal domain IUJ49_10805 PF01648 4'-phosphopantetheinyl transferase superfamily IUJ49_10810 PF00005 ABC transporter IUJ49_10815 PF01032 FecCD transport family IUJ49_10820 PF01032 FecCD transport family IUJ49_10825 PF00593 TonB dependent receptor IUJ49_10825 PF07715 TonB-dependent Receptor Plug Domain IUJ49_10840 PF11143 Protein of unknown function (DUF2919) IUJ49_10845 PF01544 CorA-like Mg2+ transporter protein IUJ49_10855 PF01012 Electron transfer flavoprotein domain IUJ49_10860 PF01012 Electron transfer flavoprotein domain IUJ49_10860 PF00766 Electron transfer flavoprotein FAD-binding domain IUJ49_10865 PF00266 Aminotransferase class-V IUJ49_10870 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ49_10875 PF00793 DAHP synthetase I family IUJ49_10880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_10880 PF00672 HAMP domain IUJ49_10885 PF04055 Radical SAM superfamily IUJ49_10890 PF13742 OB-fold nucleic acid binding domain IUJ49_10890 PF02601 Exonuclease VII, large subunit IUJ49_10895 PF00892 EamA-like transporter family IUJ49_10900 PF02472 Biopolymer transport protein ExbD/TolR IUJ49_10905 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_10915 PF02705 K+ potassium transporter IUJ49_10920 PF00571 CBS domain IUJ49_10920 PF00478 IMP dehydrogenase / GMP reductase domain IUJ49_10925 PF00117 Glutamine amidotransferase class-I IUJ49_10925 PF00958 GMP synthase C terminal domain IUJ49_10925 PF02540 NAD synthase IUJ49_10940 PF02805 Metal binding domain of Ada IUJ49_10940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ49_10940 PF12833 Helix-turn-helix domain IUJ49_10940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ49_10955 PF05724 Thiopurine S-methyltransferase (TPMT) IUJ49_10960 PF00675 Insulinase (Peptidase family M16) IUJ49_10960 PF05193 Peptidase M16 inactive domain IUJ49_10965 PF00300 Histidine phosphatase superfamily (branch 1) IUJ49_10975 PF00892 EamA-like transporter family IUJ49_10980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_10985 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain IUJ49_10990 PF02559 CarD-like/TRCF domain IUJ49_10990 PF00270 DEAD/DEAH box helicase IUJ49_10990 PF00271 Helicase conserved C-terminal domain IUJ49_10990 PF03461 TRCF domain IUJ49_10990 PF17757 UvrB interaction domain IUJ49_11000 PF02687 FtsX-like permease family IUJ49_11000 PF12704 MacB-like periplasmic core domain IUJ49_11005 PF00005 ABC transporter IUJ49_11010 PF02687 FtsX-like permease family IUJ49_11010 PF12704 MacB-like periplasmic core domain IUJ49_11025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_11025 PF05697 Bacterial trigger factor protein (TF) IUJ49_11025 PF05698 Bacterial trigger factor protein (TF) C-terminus IUJ49_11030 PF00574 Clp protease IUJ49_11035 PF06689 ClpX C4-type zinc finger IUJ49_11035 PF07724 AAA domain (Cdc48 subfamily) IUJ49_11035 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_11040 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_11040 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ49_11040 PF02190 ATP-dependent protease La (LON) substrate-binding domain IUJ49_11045 PF00216 Bacterial DNA-binding protein IUJ49_11050 PF13145 PPIC-type PPIASE domain IUJ49_11055 PF00005 ABC transporter IUJ49_11055 PF12848 ABC transporter IUJ49_11060 PF00474 Sodium:solute symporter family IUJ49_11065 PF04341 Protein of unknown function, DUF485 IUJ49_11080 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_11120 PF01235 Sodium:alanine symporter family IUJ49_11130 PF06167 Glucose-regulated metallo-peptidase M90 IUJ49_11135 PF01184 GPR1/FUN34/yaaH family IUJ49_11150 PF09278 MerR, DNA binding IUJ49_11150 PF00376 MerR family regulatory protein IUJ49_11155 PF00682 HMGL-like IUJ49_11160 PF00289 Biotin carboxylase, N-terminal domain IUJ49_11160 PF00364 Biotin-requiring enzyme IUJ49_11160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain IUJ49_11160 PF02785 Biotin carboxylase C-terminal domain IUJ49_11165 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_11170 PF01039 Carboxyl transferase domain IUJ49_11175 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ49_11175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ49_11175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ49_11180 PF00171 Aldehyde dehydrogenase family IUJ49_11185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ49_11185 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ49_11185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ49_11190 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_11195 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_11200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase IUJ49_11200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase IUJ49_11210 PF13520 Amino acid permease IUJ49_11215 PF01925 Sulfite exporter TauE/SafE IUJ49_11225 PF03466 LysR substrate binding domain IUJ49_11225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_11230 PF00248 Aldo/keto reductase family IUJ49_11240 PF00248 Aldo/keto reductase family IUJ49_11245 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_11245 PF07694 5TMR of 5TMR-LYT IUJ49_11250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_11250 PF03466 LysR substrate binding domain IUJ49_11255 PF00232 Glycosyl hydrolase family 1 IUJ49_11260 PF01966 HD domain IUJ49_11270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_11270 PF03466 LysR substrate binding domain IUJ49_11275 PF01261 Xylose isomerase-like TIM barrel IUJ49_11280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ49_11280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain IUJ49_11285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_11285 PF03466 LysR substrate binding domain IUJ49_11295 PF03279 Bacterial lipid A biosynthesis acyltransferase IUJ49_11300 PF03279 Bacterial lipid A biosynthesis acyltransferase IUJ49_11315 PF17151 Periplasmic sensor domain IUJ49_11315 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_11325 PF00136 DNA polymerase family B IUJ49_11325 PF03104 DNA polymerase family B, exonuclease domain IUJ49_11350 PF01554 MatE IUJ49_11355 PF06786 Uncharacterised protein family (UPF0253) IUJ49_11360 PF00677 Lumazine binding domain IUJ49_11370 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_11375 PF01370 NAD dependent epimerase/dehydratase family IUJ49_11375 PF02222 ATP-grasp domain IUJ49_11380 PF00892 EamA-like transporter family IUJ49_11385 PF02525 Flavodoxin-like fold IUJ49_11410 PF13509 S1 domain IUJ49_11410 PF17783 CvfB-like winged helix domain IUJ49_11420 PF04269 Protein of unknown function, DUF440 IUJ49_11425 PF00912 Transglycosylase IUJ49_11430 PF04269 Protein of unknown function, DUF440 IUJ49_11435 PF03776 Septum formation topological specificity factor MinE IUJ49_11440 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain IUJ49_11445 PF05209 Septum formation inhibitor MinC, N-terminal domain IUJ49_11445 PF03775 Septum formation inhibitor MinC, C-terminal domain IUJ49_11450 PF05166 YcgL domain IUJ49_11455 PF13406 Transglycosylase SLT domain IUJ49_11460 PF03315 Serine dehydratase beta chain IUJ49_11460 PF03313 Serine dehydratase alpha chain IUJ49_11465 PF03315 Serine dehydratase beta chain IUJ49_11465 PF03313 Serine dehydratase alpha chain IUJ49_11470 PF06865 Pyrimidine/purine nucleoside phosphorylase IUJ49_11490 PF00376 MerR family regulatory protein IUJ49_11490 PF09278 MerR, DNA binding IUJ49_11495 PF00108 Thiolase, N-terminal domain IUJ49_11495 PF02803 Thiolase, C-terminal domain IUJ49_11500 PF00563 EAL domain IUJ49_11500 PF08668 HDOD domain IUJ49_11505 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IUJ49_11510 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) IUJ49_11520 PF04542 Sigma-70 region 2 IUJ49_11520 PF08281 Sigma-70, region 4 IUJ49_11545 PF01882 Protein of unknown function DUF58 IUJ49_11550 PF07726 ATPase family associated with various cellular activities (AAA) IUJ49_11550 PF17863 AAA lid domain IUJ49_11555 PF02803 Thiolase, C-terminal domain IUJ49_11555 PF00108 Thiolase, N-terminal domain IUJ49_11560 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_11560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain IUJ49_11560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain IUJ49_11570 PF07152 YaeQ protein IUJ49_11615 PF02954 Bacterial regulatory protein, Fis family IUJ49_11615 PF13188 PAS domain IUJ49_11615 PF00158 Sigma-54 interaction domain IUJ49_11620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain IUJ49_11620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain IUJ49_11625 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_11630 PF01546 Peptidase family M20/M25/M40 IUJ49_11630 PF07687 Peptidase dimerisation domain IUJ49_11635 PF01979 Amidohydrolase family IUJ49_11640 PF00696 Amino acid kinase family IUJ49_11645 PF00892 EamA-like transporter family IUJ49_11650 PF13478 XdhC Rossmann domain IUJ49_11650 PF02625 XdhC and CoxI family IUJ49_11660 PF12804 MobA-like NTP transferase domain IUJ49_11665 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_11665 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ49_11670 PF01979 Amidohydrolase family IUJ49_11675 PF00941 FAD binding domain in molybdopterin dehydrogenase IUJ49_11680 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IUJ49_11680 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IUJ49_11680 PF01799 [2Fe-2S] binding domain IUJ49_11685 PF00860 Permease family IUJ49_11690 PF01979 Amidohydrolase family IUJ49_11695 PF00860 Permease family IUJ49_11700 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase IUJ49_11700 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain IUJ49_11705 PF00941 FAD binding domain in molybdopterin dehydrogenase IUJ49_11705 PF03450 CO dehydrogenase flavoprotein C-terminal domain IUJ49_11710 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_11710 PF01799 [2Fe-2S] binding domain IUJ49_11720 PF05433 Glycine zipper 2TM domain IUJ49_11730 PF03606 C4-dicarboxylate anaerobic carrier IUJ49_11735 PF00501 AMP-binding enzyme IUJ49_11735 PF13193 AMP-binding enzyme C-terminal domain IUJ49_11745 PF01502 Phosphoribosyl-AMP cyclohydrolase IUJ49_11745 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase IUJ49_11750 PF00977 Histidine biosynthesis protein IUJ49_11755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_11755 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_11755 PF01627 Hpt domain IUJ49_11755 PF00072 Response regulator receiver domain IUJ49_11760 PF08448 PAS fold IUJ49_11760 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_11765 PF00072 Response regulator receiver domain IUJ49_11770 PF00977 Histidine biosynthesis protein IUJ49_11775 PF00117 Glutamine amidotransferase class-I IUJ49_11780 PF00475 Imidazoleglycerol-phosphate dehydratase IUJ49_11780 PF08645 Polynucleotide kinase 3 phosphatase IUJ49_11785 PF00155 Aminotransferase class I and II IUJ49_11790 PF00815 Histidinol dehydrogenase IUJ49_11795 PF01634 ATP phosphoribosyltransferase IUJ49_11795 PF08029 HisG, C-terminal domain IUJ49_11805 PF13307 Helicase C-terminal domain IUJ49_11805 PF04851 Type III restriction enzyme, res subunit IUJ49_11810 PF00814 Glycoprotease family IUJ49_11820 PF12697 Alpha/beta hydrolase family IUJ49_11820 PF08241 Methyltransferase domain IUJ49_11825 PF00501 AMP-binding enzyme IUJ49_11825 PF13193 AMP-binding enzyme C-terminal domain IUJ49_11830 PF01612 3'-5' exonuclease IUJ49_11830 PF00570 HRDC domain IUJ49_11835 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_11845 PF01207 Dihydrouridine synthase (Dus) IUJ49_11850 PF04304 Protein of unknown function (DUF454) IUJ49_11855 PF00156 Phosphoribosyl transferase domain IUJ49_11860 PF12170 DNA polymerase III tau subunit V interacting with alpha IUJ49_11860 PF12169 DNA polymerase III subunits gamma and tau domain III IUJ49_11860 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding IUJ49_11865 PF02575 YbaB/EbfC DNA-binding family IUJ49_11875 PF00072 Response regulator receiver domain IUJ49_11875 PF00196 Bacterial regulatory proteins, luxR family IUJ49_11880 PF02272 DHHA1 domain IUJ49_11880 PF01743 Poly A polymerase head domain IUJ49_11880 PF00571 CBS domain IUJ49_11880 PF01368 DHH family IUJ49_11885 PF00271 Helicase conserved C-terminal domain IUJ49_11885 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold IUJ49_11885 PF04408 Helicase associated domain (HA2) IUJ49_11885 PF11898 Domain of unknown function (DUF3418) IUJ49_11885 PF00270 DEAD/DEAH box helicase IUJ49_11895 PF01386 Ribosomal L25p family IUJ49_11900 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ49_11900 PF00672 HAMP domain IUJ49_11900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_11900 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_11900 PF01627 Hpt domain IUJ49_11900 PF00072 Response regulator receiver domain IUJ49_11905 PF00072 Response regulator receiver domain IUJ49_11910 PF00753 Metallo-beta-lactamase superfamily IUJ49_11920 PF00586 AIR synthase related protein, N-terminal domain IUJ49_11920 PF02769 AIR synthase related protein, C-terminal domain IUJ49_11935 PF17785 PUA-like domain IUJ49_11935 PF10672 S-adenosylmethionine-dependent methyltransferase IUJ49_11940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_11940 PF00672 HAMP domain IUJ49_11945 PF00708 Acylphosphatase IUJ49_11950 PF00043 Glutathione S-transferase, C-terminal domain IUJ49_11950 PF02798 Glutathione S-transferase, N-terminal domain IUJ49_11955 PF01588 Putative tRNA binding domain IUJ49_11955 PF09334 tRNA synthetases class I (M) IUJ49_11955 PF08264 Anticodon-binding domain of tRNA IUJ49_11960 PF10609 NUBPL iron-transfer P-loop NTPase IUJ49_11965 PF00485 Phosphoribulokinase / Uridine kinase family IUJ49_11970 PF00692 dUTPase IUJ49_11975 PF01384 Phosphate transporter family IUJ49_11980 PF00575 S1 RNA binding domain IUJ49_11980 PF12111 Polyribonucleotide phosphorylase C terminal IUJ49_11980 PF10150 Ribonuclease E/G family IUJ49_11985 PF00849 RNA pseudouridylate synthase IUJ49_11985 PF01479 S4 domain IUJ49_11990 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_11995 PF02545 Maf-like protein IUJ49_12000 PF07690 Major Facilitator Superfamily IUJ49_12005 PF03466 LysR substrate binding domain IUJ49_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_12015 PF02620 Large ribosomal RNA subunit accumulation protein YceD IUJ49_12020 PF01783 Ribosomal L32p protein family IUJ49_12025 PF02504 Fatty acid synthesis protein IUJ49_12030 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ49_12030 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ49_12035 PF00698 Acyl transferase domain IUJ49_12045 PF00550 Phosphopantetheine attachment site IUJ49_12050 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ49_12050 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ49_12055 PF01063 Amino-transferase class IV IUJ49_12060 PF02618 YceG-like family IUJ49_12065 PF02223 Thymidylate kinase IUJ49_12070 PF09115 DNA polymerase III, delta subunit, C terminal IUJ49_12075 PF01026 TatD related DNase IUJ49_12080 PF00589 Phage integrase family IUJ49_12090 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF IUJ49_12090 PF01189 16S rRNA methyltransferase RsmB/F IUJ49_12090 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF IUJ49_12095 PF02470 MlaD protein IUJ49_12100 PF04403 Paraquat-inducible protein A IUJ49_12115 PF00285 Citrate synthase, C-terminal domain IUJ49_12120 PF03972 MmgE/PrpD family IUJ49_12135 PF06974 Protein of unknown function (DUF1298) IUJ49_12135 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain IUJ49_12160 PF00106 short chain dehydrogenase IUJ49_12170 PF07130 YebG protein IUJ49_12195 PF05707 Zonular occludens toxin (Zot) IUJ49_12200 PF10734 Protein of unknown function (DUF2523) IUJ49_12235 PF05362 Lon protease (S16) C-terminal proteolytic domain IUJ49_12235 PF13654 AAA domain IUJ49_12240 PF07977 FabA-like domain IUJ49_12245 PF04957 Ribosome modulation factor IUJ49_12255 PF16326 ABC transporter C-terminal domain IUJ49_12255 PF12848 ABC transporter IUJ49_12255 PF00005 ABC transporter IUJ49_12265 PF10672 S-adenosylmethionine-dependent methyltransferase IUJ49_12265 PF02926 THUMP domain IUJ49_12265 PF01170 Putative RNA methylase family UPF0020 IUJ49_12270 PF07126 Cell-division protein ZapC IUJ49_12275 PF01180 Dihydroorotate dehydrogenase IUJ49_12280 PF05088 Bacterial NAD-glutamate dehydrogenase IUJ49_12290 PF11940 Domain of unknown function (DUF3458) Ig-like fold IUJ49_12290 PF17432 Domain of unknown function (DUF3458_C) ARM repeats IUJ49_12290 PF01433 Peptidase family M1 domain IUJ49_12295 PF17804 Tail specific protease N-terminal domain IUJ49_12295 PF03572 Peptidase family S41 IUJ49_12295 PF00595 PDZ domain IUJ49_12295 PF11818 C-terminal domain of tail specific protease (DUF3340) IUJ49_12300 PF17516 ProQ C-terminal domain IUJ49_12300 PF04352 ProQ/FINO family IUJ49_12305 PF13185 GAF domain IUJ49_12315 PF00115 Cytochrome C and Quinol oxidase polypeptide I IUJ49_12330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III IUJ49_12330 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP IUJ49_12340 PF00403 Heavy-metal-associated domain IUJ49_12355 PF13545 Crp-like helix-turn-helix domain IUJ49_12355 PF00027 Cyclic nucleotide-binding domain IUJ49_12360 PF00582 Universal stress protein family IUJ49_12365 PF01171 PP-loop family IUJ49_12380 PF13417 Glutathione S-transferase, N-terminal domain IUJ49_12385 PF05025 RbsD / FucU transport protein family IUJ49_12390 PF00005 ABC transporter IUJ49_12395 PF02653 Branched-chain amino acid transport system / permease component IUJ49_12400 PF13407 Periplasmic binding protein domain IUJ49_12405 PF00294 pfkB family carbohydrate kinase IUJ49_12410 PF00356 Bacterial regulatory proteins, lacI family IUJ49_12415 PF17152 Periplasmic sensor domain IUJ49_12415 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_12425 PF02146 Sir2 family IUJ49_12440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_12440 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_12440 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ49_12440 PF00072 Response regulator receiver domain IUJ49_12445 PF00216 Bacterial DNA-binding protein IUJ49_12450 PF03147 Ferredoxin-fold anticodon binding domain IUJ49_12450 PF03483 B3/4 domain IUJ49_12450 PF03484 tRNA synthetase B5 domain IUJ49_12450 PF01588 Putative tRNA binding domain IUJ49_12450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain IUJ49_12455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain IUJ49_12455 PF01409 tRNA synthetases class II core domain (F) IUJ49_12460 PF00589 Phage integrase family IUJ49_12460 PF02899 Phage integrase, N-terminal SAM-like domain IUJ49_12480 PF01381 Helix-turn-helix IUJ49_12495 PF06892 Phage regulatory protein CII (CP76) IUJ49_12540 PF11798 IMS family HHH motif IUJ49_12540 PF00817 impB/mucB/samB family IUJ49_12540 PF11799 impB/mucB/samB family C-terminal domain IUJ49_12540 PF13438 Domain of unknown function (DUF4113) IUJ49_12545 PF00717 Peptidase S24-like IUJ49_12690 PF00453 Ribosomal protein L20 IUJ49_12695 PF01632 Ribosomal protein L35 IUJ49_12700 PF00707 Translation initiation factor IF-3, C-terminal domain IUJ49_12700 PF05198 Translation initiation factor IF-3, N-terminal domain IUJ49_12705 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ49_12705 PF03129 Anticodon binding domain IUJ49_12705 PF02824 TGS domain IUJ49_12705 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ49_12715 PF04055 Radical SAM superfamily IUJ49_12725 PF03989 DNA gyrase C-terminal domain, beta-propeller IUJ49_12725 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ49_12735 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_12740 PF00317 Ribonucleotide reductase, all-alpha domain IUJ49_12740 PF03477 ATP cone domain IUJ49_12740 PF02867 Ribonucleotide reductase, barrel domain IUJ49_12745 PF00268 Ribonucleotide reductase, small chain IUJ49_12750 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_12755 PF06725 3D domain IUJ49_12755 PF03562 MltA specific insert domain IUJ49_12760 PF06945 Protein of unknown function (DUF1289) IUJ49_12770 PF03613 PTS system mannose/fructose/sorbose family IID component IUJ49_12775 PF03609 PTS system sorbose-specific iic component IUJ49_12780 PF03610 PTS system fructose IIA component IUJ49_12780 PF03830 PTS system sorbose subfamily IIB component IUJ49_12795 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_12795 PF00356 Bacterial regulatory proteins, lacI family IUJ49_12800 PF06560 Glucose-6-phosphate isomerase (GPI) IUJ49_12805 PF02378 Phosphotransferase system, EIIC IUJ49_12805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ49_12810 PF00294 pfkB family carbohydrate kinase IUJ49_12815 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_12815 PF00381 PTS HPr component phosphorylation site IUJ49_12820 PF00356 Bacterial regulatory proteins, lacI family IUJ49_12820 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_12825 PF03222 Tryptophan/tyrosine permease family IUJ49_12840 PF00270 DEAD/DEAH box helicase IUJ49_12840 PF00271 Helicase conserved C-terminal domain IUJ49_12850 PF01264 Chorismate synthase IUJ49_12855 PF05175 Methyltransferase small domain IUJ49_12860 PF01713 Smr domain IUJ49_12870 PF08448 PAS fold IUJ49_12870 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_12875 PF00300 Histidine phosphatase superfamily (branch 1) IUJ49_12890 PF08329 Chitinase A, N-terminal domain IUJ49_12890 PF00704 Glycosyl hydrolases family 18 IUJ49_12900 PF08274 PhnA Zinc-Ribbon IUJ49_12900 PF03831 PhnA domain IUJ49_12910 PF02567 Phenazine biosynthesis-like protein IUJ49_12925 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_12925 PF01627 Hpt domain IUJ49_12925 PF00989 PAS fold IUJ49_12925 PF00072 Response regulator receiver domain IUJ49_12925 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_12925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_12930 PF00072 Response regulator receiver domain IUJ49_12930 PF00196 Bacterial regulatory proteins, luxR family IUJ49_12940 PF00577 Outer membrane usher protein IUJ49_12940 PF13954 PapC N-terminal domain IUJ49_12940 PF13953 PapC C-terminal domain IUJ49_12945 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain IUJ49_12945 PF02753 Pili assembly chaperone PapD, C-terminal domain IUJ49_12960 PF01323 DSBA-like thioredoxin domain IUJ49_12980 PF03330 Lytic transglycolase IUJ49_12980 PF05036 Sporulation related domain IUJ49_12985 PF04310 MukB N-terminal IUJ49_12985 PF16330 MukB hinge domain IUJ49_12990 PF04288 MukE-like family IUJ49_12995 PF03882 MukF winged-helix domain IUJ49_12995 PF17193 MukF C-terminal domain IUJ49_12995 PF17192 MukF middle domain IUJ49_13000 PF13847 Methyltransferase domain IUJ49_13005 PF02698 DUF218 domain IUJ49_13010 PF00121 Triosephosphate isomerase IUJ49_13015 PF00365 Phosphofructokinase IUJ49_13020 PF01546 Peptidase family M20/M25/M40 IUJ49_13020 PF07687 Peptidase dimerisation domain IUJ49_13025 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_13030 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ49_13030 PF02789 Cytosol aminopeptidase family, N-terminal domain IUJ49_13070 PF00128 Alpha amylase, catalytic domain IUJ49_13070 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ49_13080 PF11398 Protein of unknown function (DUF2813) IUJ49_13085 PF14525 AraC-binding-like domain IUJ49_13085 PF12833 Helix-turn-helix domain IUJ49_13095 PF03466 LysR substrate binding domain IUJ49_13095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_13100 PF01925 Sulfite exporter TauE/SafE IUJ49_13110 PF03942 DTW domain IUJ49_13115 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_13115 PF18029 Glyoxalase-like domain IUJ49_13120 PF07478 D-ala D-ala ligase C-terminus IUJ49_13120 PF01820 D-ala D-ala ligase N-terminus IUJ49_13130 PF00255 Glutathione peroxidase IUJ49_13135 PF00271 Helicase conserved C-terminal domain IUJ49_13135 PF00270 DEAD/DEAH box helicase IUJ49_13140 PF13673 Acetyltransferase (GNAT) domain IUJ49_13150 PF02694 Uncharacterised BCR, YnfA/UPF0060 family IUJ49_13160 PF01928 CYTH domain IUJ49_13170 PF00583 Acetyltransferase (GNAT) family IUJ49_13175 PF00465 Iron-containing alcohol dehydrogenase IUJ49_13180 PF03992 Antibiotic biosynthesis monooxygenase IUJ49_13185 PF08543 Phosphomethylpyrimidine kinase IUJ49_13205 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus IUJ49_13205 PF00561 alpha/beta hydrolase fold IUJ49_13210 PF01575 MaoC like domain IUJ49_13230 PF00664 ABC transporter transmembrane region IUJ49_13230 PF00005 ABC transporter IUJ49_13235 PF00005 ABC transporter IUJ49_13235 PF00664 ABC transporter transmembrane region IUJ49_13240 PF00072 Response regulator receiver domain IUJ49_13240 PF01627 Hpt domain IUJ49_13240 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_13240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_13240 PF00672 HAMP domain IUJ49_13240 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) IUJ49_13245 PF00085 Thioredoxin IUJ49_13250 PF00939 Sodium:sulfate symporter transmembrane region IUJ49_13255 PF00343 Carbohydrate phosphorylase IUJ49_13275 PF04715 Anthranilate synthase component I, N terminal region IUJ49_13275 PF00425 chorismate binding enzyme IUJ49_13280 PF00293 NUDIX domain IUJ49_13285 PF03222 Tryptophan/tyrosine permease family IUJ49_13290 PF00375 Sodium:dicarboxylate symporter family IUJ49_13295 PF16124 RecQ zinc-binding IUJ49_13295 PF00570 HRDC domain IUJ49_13295 PF00271 Helicase conserved C-terminal domain IUJ49_13295 PF00270 DEAD/DEAH box helicase IUJ49_13295 PF09382 RQC domain IUJ49_13300 PF06798 PrkA serine protein kinase C-terminal domain IUJ49_13300 PF08298 PrkA AAA domain IUJ49_13305 PF04285 Protein of unknown function (DUF444) IUJ49_13310 PF04293 SpoVR like protein IUJ49_13315 PF00392 Bacterial regulatory proteins, gntR family IUJ49_13315 PF07840 FadR C-terminal domain IUJ49_13320 PF06450 Bacterial Na+/H+ antiporter B (NhaB) IUJ49_13325 PF02600 Disulfide bond formation protein DsbB IUJ49_13330 PF09335 SNARE associated Golgi protein IUJ49_13340 PF02151 UvrB/uvrC motif IUJ49_13340 PF17757 UvrB interaction domain IUJ49_13340 PF04851 Type III restriction enzyme, res subunit IUJ49_13340 PF12344 Ultra-violet resistance protein B IUJ49_13340 PF00271 Helicase conserved C-terminal domain IUJ49_13350 PF06826 Predicted Permease Membrane Region IUJ49_13350 PF02080 TrkA-C domain IUJ49_13355 PF01464 Transglycosylase SLT domain IUJ49_13355 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_13370 PF01970 Tripartite tricarboxylate transporter TctA family IUJ49_13375 PF00072 Response regulator receiver domain IUJ49_13375 PF08279 HTH domain IUJ49_13375 PF12431 Transcriptional regulator IUJ49_13380 PF17203 Single cache domain 3 IUJ49_13380 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IUJ49_13380 PF00989 PAS fold IUJ49_13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_13385 PF00480 ROK family IUJ49_13385 PF01047 MarR family IUJ49_13390 PF00672 HAMP domain IUJ49_13390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_13390 PF17200 Single Cache domain 2 IUJ49_13395 PF02810 SEC-C motif IUJ49_13400 PF01266 FAD dependent oxidoreductase IUJ49_13400 PF04324 BFD-like [2Fe-2S] binding domain IUJ49_13405 PF00890 FAD binding domain IUJ49_13410 PF02754 Cysteine-rich domain IUJ49_13410 PF13183 4Fe-4S dicluster domain IUJ49_13425 PF02335 Cytochrome c552 IUJ49_13430 PF13435 Cytochrome c554 and c-prime IUJ49_13430 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) IUJ49_13435 PF00037 4Fe-4S binding domain IUJ49_13435 PF13247 4Fe-4S dicluster domain IUJ49_13440 PF03916 Polysulphide reductase, NrfD IUJ49_13445 PF01578 Cytochrome C assembly protein IUJ49_13445 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUJ49_13450 PF08534 Redoxin IUJ49_13455 PF03918 Cytochrome C biogenesis protein IUJ49_13460 PF00293 NUDIX domain IUJ49_13465 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ49_13470 PF01212 Beta-eliminating lyase IUJ49_13480 PF04244 Deoxyribodipyrimidine photo-lyase-related protein IUJ49_13485 PF01266 FAD dependent oxidoreductase IUJ49_13495 PF07969 Amidohydrolase family IUJ49_13500 PF00571 CBS domain IUJ49_13500 PF00478 IMP dehydrogenase / GMP reductase domain IUJ49_13510 PF08267 Cobalamin-independent synthase, N-terminal domain IUJ49_13510 PF01717 Cobalamin-independent synthase, Catalytic domain IUJ49_13515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_13515 PF03466 LysR substrate binding domain IUJ49_13525 PF00593 TonB dependent receptor IUJ49_13525 PF07715 TonB-dependent Receptor Plug Domain IUJ49_13530 PF12833 Helix-turn-helix domain IUJ49_13535 PF00106 short chain dehydrogenase IUJ49_13540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_13540 PF03466 LysR substrate binding domain IUJ49_13545 PF13460 NAD(P)H-binding IUJ49_13555 PF01053 Cys/Met metabolism PLP-dependent enzyme IUJ49_13560 PF05193 Peptidase M16 inactive domain IUJ49_13560 PF00675 Insulinase (Peptidase family M16) IUJ49_13565 PF01118 Semialdehyde dehydrogenase, NAD binding domain IUJ49_13565 PF02774 Semialdehyde dehydrogenase, dimerisation domain IUJ49_13570 PF00893 Small Multidrug Resistance protein IUJ49_13575 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding IUJ49_13575 PF18381 YcaO cyclodehydratase C-terminal domain IUJ49_13580 PF01226 Formate/nitrite transporter IUJ49_13585 PF01228 Glycine radical IUJ49_13585 PF02901 Pyruvate formate lyase-like IUJ49_13595 PF00202 Aminotransferase class-III IUJ49_13600 PF00266 Aminotransferase class-V IUJ49_13605 PF00392 Bacterial regulatory proteins, gntR family IUJ49_13605 PF07702 UTRA domain IUJ49_13615 PF00005 ABC transporter IUJ49_13620 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_13625 PF01266 FAD dependent oxidoreductase IUJ49_13630 PF03692 Putative zinc- or iron-chelating domain IUJ49_13635 PF00106 short chain dehydrogenase IUJ49_13645 PF02629 CoA binding domain IUJ49_13645 PF00549 CoA-ligase IUJ49_13650 PF08442 ATP-grasp domain IUJ49_13650 PF00549 CoA-ligase IUJ49_13655 PF02817 e3 binding domain IUJ49_13655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ49_13655 PF00364 Biotin-requiring enzyme IUJ49_13660 PF16078 2-oxoglutarate dehydrogenase N-terminus IUJ49_13660 PF00676 Dehydrogenase E1 component IUJ49_13660 PF16870 2-oxoglutarate dehydrogenase C-terminal IUJ49_13660 PF02779 Transketolase, pyrimidine binding domain IUJ49_13665 PF13085 2Fe-2S iron-sulfur cluster binding domain IUJ49_13670 PF00890 FAD binding domain IUJ49_13670 PF02910 Fumarate reductase flavoprotein C-term IUJ49_13675 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ49_13680 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit IUJ49_13685 PF00285 Citrate synthase, C-terminal domain IUJ49_13700 PF00109 Beta-ketoacyl synthase, N-terminal domain IUJ49_13700 PF02801 Beta-ketoacyl synthase, C-terminal domain IUJ49_13705 PF01266 FAD dependent oxidoreductase IUJ49_13705 PF05430 S-adenosyl-L-methionine-dependent methyltransferase IUJ49_13715 PF03606 C4-dicarboxylate anaerobic carrier IUJ49_13730 PF01863 Protein of unknown function DUF45 IUJ49_13745 PF01197 Ribosomal protein L31 IUJ49_13750 PF00444 Ribosomal protein L36 IUJ49_13755 PF02678 Pirin IUJ49_13755 PF05726 Pirin C-terminal cupin domain IUJ49_13760 PF03466 LysR substrate binding domain IUJ49_13760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_13765 PF02311 AraC-like ligand binding domain IUJ49_13765 PF12833 Helix-turn-helix domain IUJ49_13770 PF02653 Branched-chain amino acid transport system / permease component IUJ49_13775 PF00005 ABC transporter IUJ49_13780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_13785 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ49_13790 PF00596 Class II Aldolase and Adducin N-terminal domain IUJ49_13795 PF11762 L-arabinose isomerase C-terminal domain IUJ49_13795 PF02610 L-arabinose isomerase IUJ49_13800 PF08411 Exonuclease C-terminal IUJ49_13800 PF00929 Exonuclease IUJ49_13815 PF03788 LrgA family IUJ49_13820 PF04172 LrgB-like family IUJ49_13825 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ49_13825 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region IUJ49_13830 PF00501 AMP-binding enzyme IUJ49_13835 PF08891 YfcL protein IUJ49_13845 PF03741 Integral membrane protein TerC family IUJ49_13850 PF00691 OmpA family IUJ49_13855 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_13855 PF17152 Periplasmic sensor domain IUJ49_13860 PF13689 YfiR/HmsC-like IUJ49_13865 PF18024 Helix-turn-helix domain IUJ49_13865 PF00158 Sigma-54 interaction domain IUJ49_13880 PF01329 Pterin 4 alpha carbinolamine dehydratase IUJ49_13885 PF00351 Biopterin-dependent aromatic amino acid hydroxylase IUJ49_13890 PF05128 Domain of unknown function (DUF697) IUJ49_13895 PF04317 YcjX-like family, DUF463 IUJ49_13905 PF06667 Phage shock protein B IUJ49_13910 PF04012 PspA/IM30 family IUJ49_13915 PF02954 Bacterial regulatory protein, Fis family IUJ49_13915 PF00158 Sigma-54 interaction domain IUJ49_13920 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_13925 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_13930 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_13930 PF12911 N-terminal TM domain of oligopeptide transport permease C IUJ49_13935 PF00005 ABC transporter IUJ49_13935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region IUJ49_13940 PF00005 ABC transporter IUJ49_13945 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) IUJ49_13950 PF00156 Phosphoribosyl transferase domain IUJ49_13955 PF02674 Colicin V production protein IUJ49_13960 PF02403 Seryl-tRNA synthetase N-terminal domain IUJ49_13960 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ49_13965 PF12002 MgsA AAA+ ATPase C terminal IUJ49_13965 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_13965 PF16193 AAA C-terminal domain IUJ49_13970 PF03548 Outer membrane lipoprotein carrier protein LolA IUJ49_13975 PF13491 4TM region of DNA translocase FtsK/SpoIIIE IUJ49_13975 PF17854 FtsK alpha domain IUJ49_13975 PF09397 Ftsk gamma domain IUJ49_13975 PF01580 FtsK/SpoIIIE family IUJ49_13980 PF01037 Lrp/AsnC ligand binding domain IUJ49_13985 PF05222 Alanine dehydrogenase/PNT, N-terminal domain IUJ49_13985 PF01262 Alanine dehydrogenase/PNT, C-terminal domain IUJ49_13990 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_13995 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_13995 PF17158 Membrane-associated sensor, integral membrane domain IUJ49_14000 PF05433 Glycine zipper 2TM domain IUJ49_14005 PF03588 Leucyl/phenylalanyl-tRNA protein transferase IUJ49_14010 PF04377 Arginine-tRNA-protein transferase, C terminus IUJ49_14010 PF04376 Arginine-tRNA-protein transferase, N terminus IUJ49_14015 PF01176 Translation initiation factor 1A / IF-1 IUJ49_14020 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_14020 PF07724 AAA domain (Cdc48 subfamily) IUJ49_14020 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_14020 PF02861 Clp amino terminal domain, pathogenicity island component IUJ49_14020 PF17871 AAA lid domain IUJ49_14025 PF02617 ATP-dependent Clp protease adaptor protein ClpS IUJ49_14030 PF00313 'Cold-shock' DNA-binding domain IUJ49_14035 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain IUJ49_14035 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain IUJ49_14065 PF04717 Type VI secretion system, phage-baseplate injector IUJ49_14080 PF06744 Type VI secretion protein IcmF C-terminal IUJ49_14080 PF06761 Intracellular multiplication and human macrophage-killing IUJ49_14080 PF14331 ImcF-related N-terminal domain IUJ49_14095 PF02954 Bacterial regulatory protein, Fis family IUJ49_14095 PF00158 Sigma-54 interaction domain IUJ49_14100 PF17871 AAA lid domain IUJ49_14100 PF00004 ATPase family associated with various cellular activities (AAA) IUJ49_14100 PF07724 AAA domain (Cdc48 subfamily) IUJ49_14100 PF10431 C-terminal, D2-small domain, of ClpB protein IUJ49_14110 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE IUJ49_14130 PF05947 Type VI secretion system, TssF IUJ49_14140 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath IUJ49_14160 PF03527 RHS protein IUJ49_14160 PF05593 RHS Repeat IUJ49_14170 PF04717 Type VI secretion system, phage-baseplate injector IUJ49_14175 PF05638 Type VI secretion system effector, Hcp IUJ49_14185 PF01740 STAS domain IUJ49_14185 PF00916 Sulfate permease family IUJ49_14200 PF03350 Uncharacterized protein family, UPF0114 IUJ49_14215 PF03239 Iron permease FTR1 family IUJ49_14220 PF01593 Flavin containing amine oxidoreductase IUJ49_14235 PF07690 Major Facilitator Superfamily IUJ49_14245 PF00005 ABC transporter IUJ49_14250 PF12704 MacB-like periplasmic core domain IUJ49_14250 PF02687 FtsX-like permease family IUJ49_14265 PF10722 Putative bacterial sensory transduction regulator IUJ49_14275 PF00265 Thymidine kinase IUJ49_14280 PF03553 Na+/H+ antiporter family IUJ49_14285 PF00816 H-NS histone family IUJ49_14290 PF01923 Cobalamin adenosyltransferase IUJ49_14295 PF12843 Putative quorum-sensing-regulated virulence factor IUJ49_14300 PF04055 Radical SAM superfamily IUJ49_14305 PF06508 Queuosine biosynthesis protein QueC IUJ49_14320 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family IUJ49_14325 PF18073 Rubredoxin metal binding domain IUJ49_14335 PF00216 Bacterial DNA-binding protein IUJ49_14340 PF00575 S1 RNA binding domain IUJ49_14345 PF02224 Cytidylate kinase IUJ49_14350 PF00925 GTP cyclohydrolase II IUJ49_14355 PF03466 LysR substrate binding domain IUJ49_14355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_14360 PF03466 LysR substrate binding domain IUJ49_14360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_14365 PF07690 Major Facilitator Superfamily IUJ49_14380 PF00881 Nitroreductase family IUJ49_14385 PF13188 PAS domain IUJ49_14385 PF03707 Bacterial signalling protein N terminal repeat IUJ49_14385 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_14385 PF00563 EAL domain IUJ49_14395 PF03466 LysR substrate binding domain IUJ49_14395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_14400 PF00072 Response regulator receiver domain IUJ49_14410 PF01212 Beta-eliminating lyase IUJ49_14425 PF00248 Aldo/keto reductase family IUJ49_14430 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) IUJ49_14440 PF03411 Penicillin-insensitive murein endopeptidase IUJ49_14450 PF04536 TPM domain IUJ49_14470 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_14475 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ49_14475 PF00691 OmpA family IUJ49_14480 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 IUJ49_14485 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit IUJ49_14490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit IUJ49_14490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit IUJ49_14500 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit IUJ49_14500 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUJ49_14505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region IUJ49_14505 PF00384 Molybdopterin oxidoreductase IUJ49_14505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_14510 PF00146 NADH dehydrogenase IUJ49_14515 PF12838 4Fe-4S dicluster domain IUJ49_14520 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 IUJ49_14525 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L IUJ49_14530 PF00361 Proton-conducting membrane transporter IUJ49_14530 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus IUJ49_14535 PF00361 Proton-conducting membrane transporter IUJ49_14540 PF00361 Proton-conducting membrane transporter IUJ49_14545 PF02769 AIR synthase related protein, C-terminal domain IUJ49_14545 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain IUJ49_14545 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal IUJ49_14550 PF01464 Transglycosylase SLT domain IUJ49_14550 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_14555 PF07191 zinc-ribbons IUJ49_14560 PF01926 50S ribosome-binding GTPase IUJ49_14560 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal IUJ49_14565 PF13360 PQQ-like domain IUJ49_14570 PF09976 Tetratricopeptide repeat-like domain IUJ49_14575 PF13393 Histidyl-tRNA synthetase IUJ49_14575 PF03129 Anticodon binding domain IUJ49_14580 PF04551 GcpE protein IUJ49_14585 PF13464 Domain of unknown function (DUF4115) IUJ49_14595 PF04055 Radical SAM superfamily IUJ49_14600 PF00334 Nucleoside diphosphate kinase IUJ49_14605 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ49_14605 PF12404 Peptidase IUJ49_14610 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ49_14610 PF12404 Peptidase IUJ49_14615 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_14620 PF00012 Hsp70 protein IUJ49_14625 PF07743 HSCB C-terminal oligomerisation domain IUJ49_14630 PF01521 Iron-sulphur cluster biosynthesis IUJ49_14635 PF01592 NifU-like N terminal domain IUJ49_14640 PF00266 Aminotransferase class-V IUJ49_14645 PF02082 Transcriptional regulator IUJ49_14650 PF00588 SpoU rRNA Methylase family IUJ49_14660 PF02036 SCP-2 sterol transfer family IUJ49_14665 PF01136 Peptidase family U32 IUJ49_14670 PF01136 Peptidase family U32 IUJ49_14675 PF13181 Tetratricopeptide repeat IUJ49_14675 PF07719 Tetratricopeptide repeat IUJ49_14685 PF07549 SecD/SecF GG Motif IUJ49_14685 PF02355 Protein export membrane protein IUJ49_14690 PF07549 SecD/SecF GG Motif IUJ49_14690 PF13721 SecD export protein N-terminal TM region IUJ49_14690 PF02355 Protein export membrane protein IUJ49_14695 PF02699 Preprotein translocase subunit IUJ49_14700 PF01702 Queuine tRNA-ribosyltransferase IUJ49_14705 PF02547 Queuosine biosynthesis protein IUJ49_14710 PF00571 CBS domain IUJ49_14715 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUJ49_14715 PF00578 AhpC/TSA family IUJ49_14720 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_14720 PF13192 Thioredoxin domain IUJ49_14725 PF07690 Major Facilitator Superfamily IUJ49_14735 PF08241 Methyltransferase domain IUJ49_14740 PF03960 ArsC family IUJ49_14745 PF01758 Sodium Bile acid symporter family IUJ49_14750 PF02374 Anion-transporting ATPase IUJ49_14755 PF06953 Arsenical resistance operon trans-acting repressor ArsD IUJ49_14760 PF01022 Bacterial regulatory protein, arsR family IUJ49_14775 PF02347 Glycine cleavage system P-protein IUJ49_14780 PF01597 Glycine cleavage H-protein IUJ49_14785 PF01571 Aminomethyltransferase folate-binding domain IUJ49_14785 PF08669 Glycine cleavage T-protein C-terminal barrel domain IUJ49_14790 PF01494 FAD binding domain IUJ49_14795 PF01494 FAD binding domain IUJ49_14800 PF03695 Uncharacterised protein family (UPF0149) IUJ49_14805 PF05164 Cell division protein ZapA IUJ49_14815 PF07690 Major Facilitator Superfamily IUJ49_14820 PF00043 Glutathione S-transferase, C-terminal domain IUJ49_14820 PF02798 Glutathione S-transferase, N-terminal domain IUJ49_14830 PF00459 Inositol monophosphatase family IUJ49_14835 PF12729 Four helix bundle sensory module for signal transduction IUJ49_14835 PF00672 HAMP domain IUJ49_14835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_14840 PF02535 ZIP Zinc transporter IUJ49_14850 PF01048 Phosphorylase superfamily IUJ49_14860 PF01497 Periplasmic binding protein IUJ49_14880 PF02561 Flagellar protein FliS IUJ49_14885 PF07196 Flagellin hook IN motif IUJ49_14885 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ49_14885 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ49_14895 PF00700 Bacterial flagellin C-terminal helical region IUJ49_14895 PF07196 Flagellin hook IN motif IUJ49_14895 PF00669 Bacterial flagellin N-terminal helical region IUJ49_14900 PF07196 Flagellin hook IN motif IUJ49_14900 PF00700 Bacterial flagellin C-terminal helical region IUJ49_14900 PF00669 Bacterial flagellin N-terminal helical region IUJ49_14905 PF03458 UPF0126 domain IUJ49_14915 PF02926 THUMP domain IUJ49_14915 PF02568 Thiamine biosynthesis protein (ThiI) IUJ49_14925 PF06832 Penicillin-Binding Protein C-terminus Family IUJ49_14925 PF00912 Transglycosylase IUJ49_14925 PF00905 Penicillin binding protein transpeptidase domain IUJ49_14930 PF07678 A-macroglobulin TED domain IUJ49_14930 PF00207 Alpha-2-macroglobulin family IUJ49_14930 PF07703 Alpha-2-macroglobulin bait region domain IUJ49_14930 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain IUJ49_14930 PF11974 Bacterial alpha-2-macroglobulin MG3 domain IUJ49_14930 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain IUJ49_14930 PF17962 Bacterial macroglobulin domain 6 IUJ49_14930 PF01835 MG2 domain IUJ49_14930 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain IUJ49_14935 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_14935 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ49_14940 PF03707 Bacterial signalling protein N terminal repeat IUJ49_14940 PF00563 EAL domain IUJ49_14940 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_14945 PF04055 Radical SAM superfamily IUJ49_14955 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_14960 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_14965 PF00497 Bacterial extracellular solute-binding proteins, family 3 IUJ49_14970 PF00005 ABC transporter IUJ49_14975 PF03956 Lysine exporter LysO IUJ49_14980 PF01979 Amidohydrolase family IUJ49_14985 PF04336 Acyl carrier protein phosphodiesterase IUJ49_15000 PF03960 ArsC family IUJ49_15005 PF00578 AhpC/TSA family IUJ49_15010 PF01435 Peptidase family M48 IUJ49_15010 PF13181 Tetratricopeptide repeat IUJ49_15015 PF01206 Sulfurtransferase TusA IUJ49_15020 PF01594 AI-2E family transporter IUJ49_15030 PF00561 alpha/beta hydrolase fold IUJ49_15035 PF03976 Polyphosphate kinase 2 (PPK2) IUJ49_15040 PF00005 ABC transporter IUJ49_15040 PF08402 TOBE domain IUJ49_15045 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_15050 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_15050 PF14785 Maltose transport system permease protein MalF P2 domain IUJ49_15055 PF01547 Bacterial extracellular solute-binding protein IUJ49_15060 PF04245 37-kD nucleoid-associated bacterial protein IUJ49_15065 PF07208 Protein of unknown function (DUF1414) IUJ49_15070 PF11893 Domain of unknown function (DUF3413) IUJ49_15070 PF00884 Sulfatase IUJ49_15075 PF00593 TonB dependent receptor IUJ49_15075 PF07715 TonB-dependent Receptor Plug Domain IUJ49_15080 PF00326 Prolyl oligopeptidase family IUJ49_15080 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain IUJ49_15100 PF03974 Ecotin IUJ49_15105 PF04219 Protein of unknown function, DUF IUJ49_15110 PF03466 LysR substrate binding domain IUJ49_15110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_15115 PF01817 Chorismate mutase type II IUJ49_15115 PF02153 Prephenate dehydrogenase IUJ49_15120 PF00793 DAHP synthetase I family IUJ49_15125 PF03009 Glycerophosphoryl diester phosphodiesterase family IUJ49_15130 PF01266 FAD dependent oxidoreductase IUJ49_15130 PF16901 C-terminal domain of alpha-glycerophosphate oxidase IUJ49_15135 PF08220 DeoR-like helix-turn-helix domain IUJ49_15135 PF00455 DeoR C terminal sensor domain IUJ49_15140 PF07690 Major Facilitator Superfamily IUJ49_15145 PF00230 Major intrinsic protein IUJ49_15150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain IUJ49_15150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain IUJ49_15155 PF03466 LysR substrate binding domain IUJ49_15155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_15175 PF00248 Aldo/keto reductase family IUJ49_15180 PF07690 Major Facilitator Superfamily IUJ49_15190 PF02322 Cytochrome bd terminal oxidase subunit II IUJ49_15195 PF01654 Cytochrome bd terminal oxidase subunit I IUJ49_15200 PF00155 Aminotransferase class I and II IUJ49_15200 PF00392 Bacterial regulatory proteins, gntR family IUJ49_15210 PF04391 Protein of unknown function (DUF533) IUJ49_15220 PF03061 Thioesterase superfamily IUJ49_15225 PF10689 Protein of unknown function (DUF2496) IUJ49_15235 PF07690 Major Facilitator Superfamily IUJ49_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_15240 PF03466 LysR substrate binding domain IUJ49_15250 PF07690 Major Facilitator Superfamily IUJ49_15255 PF09102 Exotoxin A, targeting IUJ49_15255 PF09009 Exotoxin A catalytic IUJ49_15255 PF09101 Exotoxin A binding IUJ49_15260 PF01479 S4 domain IUJ49_15260 PF00849 RNA pseudouridylate synthase IUJ49_15265 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase IUJ49_15265 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain IUJ49_15275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_15285 PF03852 DNA mismatch endonuclease Vsr IUJ49_15290 PF00145 C-5 cytosine-specific DNA methylase IUJ49_15290 PF01381 Helix-turn-helix IUJ49_15305 PF00300 Histidine phosphatase superfamily (branch 1) IUJ49_15310 PF13309 HTH domain IUJ49_15310 PF08348 YheO-like PAS domain IUJ49_15315 PF03313 Serine dehydratase alpha chain IUJ49_15320 PF01042 Endoribonuclease L-PSP IUJ49_15330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_15330 PF00672 HAMP domain IUJ49_15345 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ49_15345 PF17944 Arginine decarboxylase C-terminal helical extension IUJ49_15345 PF17810 Arginine decarboxylase helical bundle domain IUJ49_15355 PF07687 Peptidase dimerisation domain IUJ49_15355 PF01546 Peptidase family M20/M25/M40 IUJ49_15380 PF04264 YceI-like domain IUJ49_15385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_15385 PF03466 LysR substrate binding domain IUJ49_15395 PF01268 Formate--tetrahydrofolate ligase IUJ49_15400 PF17200 Single Cache domain 2 IUJ49_15400 PF00672 HAMP domain IUJ49_15400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_15405 PF01227 GTP cyclohydrolase I IUJ49_15410 PF03453 MoeA N-terminal region (domain I and II) IUJ49_15410 PF00994 Probable molybdopterin binding domain IUJ49_15410 PF03454 MoeA C-terminal region (domain IV) IUJ49_15415 PF00899 ThiF family IUJ49_15420 PF06291 Bor protein IUJ49_15425 PF06291 Bor protein IUJ49_15435 PF06406 StbA protein IUJ49_15440 PF00561 alpha/beta hydrolase fold IUJ49_15445 PF00005 ABC transporter IUJ49_15445 PF03459 TOBE domain IUJ49_15450 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_15460 PF02391 MoaE protein IUJ49_15465 PF02597 ThiS family IUJ49_15470 PF01967 MoaC family IUJ49_15475 PF00994 Probable molybdopterin binding domain IUJ49_15480 PF03264 NapC/NirT cytochrome c family, N-terminal region IUJ49_15485 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) IUJ49_15490 PF13237 4Fe-4S dicluster domain IUJ49_15490 PF12801 4Fe-4S binding domain IUJ49_15495 PF12800 4Fe-4S binding domain IUJ49_15495 PF12838 4Fe-4S dicluster domain IUJ49_15500 PF01568 Molydopterin dinucleotide binding domain IUJ49_15500 PF10518 TAT (twin-arginine translocation) pathway signal sequence IUJ49_15500 PF04879 Molybdopterin oxidoreductase Fe4S4 domain IUJ49_15500 PF00384 Molybdopterin oxidoreductase IUJ49_15510 PF00037 4Fe-4S binding domain IUJ49_15510 PF12800 4Fe-4S binding domain IUJ49_15510 PF13187 4Fe-4S dicluster domain IUJ49_15515 PF06463 Molybdenum Cofactor Synthesis C IUJ49_15515 PF04055 Radical SAM superfamily IUJ49_15520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_15520 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term IUJ49_15520 PF07730 Histidine kinase IUJ49_15520 PF00672 HAMP domain IUJ49_15525 PF00072 Response regulator receiver domain IUJ49_15525 PF00196 Bacterial regulatory proteins, luxR family IUJ49_15535 PF00072 Response regulator receiver domain IUJ49_15535 PF01627 Hpt domain IUJ49_15535 PF17149 Periplasmic sensor domain found in signal transduction proteins IUJ49_15535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_15535 PF00672 HAMP domain IUJ49_15535 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_15545 PF01933 Uncharacterised protein family UPF0052 IUJ49_15555 PF13230 Glutamine amidotransferases class-II IUJ49_15560 PF13580 SIS domain IUJ49_15565 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ49_15565 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ49_15565 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ49_15565 PF09317 Domain of unknown function (DUF1974) IUJ49_15570 PF11849 Domain of unknown function (DUF3369) IUJ49_15580 PF00929 Exonuclease IUJ49_15585 PF00075 RNase H IUJ49_15590 PF08241 Methyltransferase domain IUJ49_15595 PF16123 Hydroxyacylglutathione hydrolase C-terminus IUJ49_15595 PF00753 Metallo-beta-lactamase superfamily IUJ49_15600 PF01464 Transglycosylase SLT domain IUJ49_15600 PF01476 LysM domain IUJ49_15605 PF03372 Endonuclease/Exonuclease/phosphatase family IUJ49_15615 PF03061 Thioesterase superfamily IUJ49_15625 PF00356 Bacterial regulatory proteins, lacI family IUJ49_15630 PF01464 Transglycosylase SLT domain IUJ49_15630 PF14718 Soluble lytic murein transglycosylase L domain IUJ49_15635 PF00563 EAL domain IUJ49_15635 PF03707 Bacterial signalling protein N terminal repeat IUJ49_15635 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_15640 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUJ49_15660 PF04357 TamB, inner membrane protein subunit of TAM complex IUJ49_15665 PF01103 Surface antigen IUJ49_15665 PF07244 Surface antigen variable number repeat IUJ49_15665 PF17243 POTRA domain TamA domain 1 IUJ49_15675 PF05698 Bacterial trigger factor protein (TF) C-terminus IUJ49_15680 PF01625 Peptide methionine sulfoxide reductase IUJ49_15690 PF02627 Carboxymuconolactone decarboxylase family IUJ49_15695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ49_15695 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_15695 PF00403 Heavy-metal-associated domain IUJ49_15700 PF13416 Bacterial extracellular solute-binding protein IUJ49_15710 PF00005 ABC transporter IUJ49_15715 PF01066 CDP-alcohol phosphatidyltransferase IUJ49_15720 PF13406 Transglycosylase SLT domain IUJ49_15725 PF01047 MarR family IUJ49_15735 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II IUJ49_15735 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III IUJ49_15735 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I IUJ49_15735 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain IUJ49_15740 PF03925 SeqA protein C-terminal domain IUJ49_15740 PF17206 SeqA protein N-terminal domain IUJ49_15745 PF12697 Alpha/beta hydrolase family IUJ49_15755 PF01402 Ribbon-helix-helix protein, copG family IUJ49_15760 PF00258 Flavodoxin IUJ49_15770 PF01475 Ferric uptake regulator family IUJ49_15775 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ49_15775 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain IUJ49_15780 PF03173 Putative carbohydrate binding domain IUJ49_15780 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain IUJ49_15780 PF00728 Glycosyl hydrolase family 20, catalytic domain IUJ49_15780 PF02838 Glycosyl hydrolase family 20, domain 2 IUJ49_15785 PF02378 Phosphotransferase system, EIIC IUJ49_15785 PF00367 phosphotransferase system, EIIB IUJ49_15785 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 IUJ49_15790 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase IUJ49_15795 PF01979 Amidohydrolase family IUJ49_15800 PF01047 MarR family IUJ49_15800 PF00480 ROK family IUJ49_15805 PF00884 Sulfatase IUJ49_15805 PF08019 Phosphoethanolamine transferase EptA/EptB IUJ49_15810 PF01709 Transcriptional regulator IUJ49_15815 PF00152 tRNA synthetases class II (D, K and N) IUJ49_15815 PF02938 GAD domain IUJ49_15815 PF01336 OB-fold nucleic acid binding domain IUJ49_15820 PF01904 Protein of unknown function DUF72 IUJ49_15825 PF13649 Methyltransferase domain IUJ49_15830 PF08003 Protein of unknown function (DUF1698) IUJ49_15850 PF10417 C-terminal domain of 1-Cys peroxiredoxin IUJ49_15850 PF00578 AhpC/TSA family IUJ49_15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_15855 PF03466 LysR substrate binding domain IUJ49_15860 PF12563 Hemolytic toxin N terminal IUJ49_15860 PF07968 Leukocidin/Hemolysin toxin family IUJ49_15865 PF00877 NlpC/P60 family IUJ49_15875 PF00171 Aldehyde dehydrogenase family IUJ49_15880 PF08359 YsiA-like protein, C-terminal region IUJ49_15880 PF00440 Bacterial regulatory proteins, tetR family IUJ49_15890 PF00465 Iron-containing alcohol dehydrogenase IUJ49_15900 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_15920 PF01554 MatE IUJ49_15940 PF01804 Penicillin amidase IUJ49_15945 PF10371 Domain of unknown function IUJ49_15945 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II IUJ49_15945 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase IUJ49_15945 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg IUJ49_15945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_15950 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster IUJ49_15950 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region IUJ49_15950 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_15955 PF03476 MOSC N-terminal beta barrel domain IUJ49_15955 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_15955 PF03473 MOSC domain IUJ49_15955 PF03473 MOSC domain IUJ49_15955 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_15955 PF03476 MOSC N-terminal beta barrel domain IUJ49_15960 PF13426 PAS domain IUJ49_15960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_15960 PF08447 PAS fold IUJ49_15965 PF01435 Peptidase family M48 IUJ49_15975 PF08241 Methyltransferase domain IUJ49_15975 PF12697 Alpha/beta hydrolase family IUJ49_15980 PF00155 Aminotransferase class I and II IUJ49_15985 PF06968 Biotin and Thiamin Synthesis associated domain IUJ49_15985 PF04055 Radical SAM superfamily IUJ49_15990 PF00202 Aminotransferase class-III IUJ49_16005 PF00152 tRNA synthetases class II (D, K and N) IUJ49_16005 PF01336 OB-fold nucleic acid binding domain IUJ49_16010 PF03605 Anaerobic c4-dicarboxylate membrane transporter IUJ49_16020 PF01546 Peptidase family M20/M25/M40 IUJ49_16020 PF07687 Peptidase dimerisation domain IUJ49_16025 PF03606 C4-dicarboxylate anaerobic carrier IUJ49_16035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_16035 PF03466 LysR substrate binding domain IUJ49_16040 PF03960 ArsC family IUJ49_16045 PF07687 Peptidase dimerisation domain IUJ49_16045 PF01546 Peptidase family M20/M25/M40 IUJ49_16050 PF02557 D-alanyl-D-alanine carboxypeptidase IUJ49_16060 PF03471 Transporter associated domain IUJ49_16060 PF00999 Sodium/hydrogen exchanger family IUJ49_16060 PF02080 TrkA-C domain IUJ49_16070 PF03471 Transporter associated domain IUJ49_16070 PF00999 Sodium/hydrogen exchanger family IUJ49_16070 PF02080 TrkA-C domain IUJ49_16080 PF01810 LysE type translocator IUJ49_16085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_16085 PF00672 HAMP domain IUJ49_16090 PF07509 Protein of unknown function (DUF1523) IUJ49_16105 PF01156 Inosine-uridine preferring nucleoside hydrolase IUJ49_16110 PF00849 RNA pseudouridylate synthase IUJ49_16115 PF01048 Phosphorylase superfamily IUJ49_16120 PF00465 Iron-containing alcohol dehydrogenase IUJ49_16125 PF04355 SmpA / OmlA family IUJ49_16130 PF13460 NAD(P)H-binding IUJ49_16135 PF03658 RnfH family Ubiquitin IUJ49_16140 PF03364 Polyketide cyclase / dehydrase and lipid transport IUJ49_16145 PF01668 SmpB protein IUJ49_16180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_16180 PF03466 LysR substrate binding domain IUJ49_16185 PF00291 Pyridoxal-phosphate dependent enzyme IUJ49_16195 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ49_16200 PF12833 Helix-turn-helix domain IUJ49_16205 PF01238 Phosphomannose isomerase type I IUJ49_16235 PF00155 Aminotransferase class I and II IUJ49_16240 PF00367 phosphotransferase system, EIIB IUJ49_16240 PF02378 Phosphotransferase system, EIIC IUJ49_16245 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family IUJ49_16245 PF00356 Bacterial regulatory proteins, lacI family IUJ49_16255 PF00583 Acetyltransferase (GNAT) family IUJ49_16275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_16275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ49_16275 PF02378 Phosphotransferase system, EIIC IUJ49_16280 PF09013 YopH, N-terminal IUJ49_16290 PF07690 Major Facilitator Superfamily IUJ49_16295 PF02378 Phosphotransferase system, EIIC IUJ49_16295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit IUJ49_16295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_16305 PF00849 RNA pseudouridylate synthase IUJ49_16310 PF00293 NUDIX domain IUJ49_16320 PF04356 Protein of unknown function (DUF489) IUJ49_16325 PF08328 Adenylosuccinate lyase C-terminal IUJ49_16325 PF00206 Lyase IUJ49_16330 PF08007 Cupin superfamily protein IUJ49_16340 PF13508 Acetyltransferase (GNAT) domain IUJ49_16350 PF02798 Glutathione S-transferase, N-terminal domain IUJ49_16355 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region IUJ49_16355 PF01243 Pyridoxamine 5'-phosphate oxidase IUJ49_16370 PF01189 16S rRNA methyltransferase RsmB/F IUJ49_16370 PF01029 NusB family IUJ49_16375 PF00462 Glutaredoxin IUJ49_16380 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain IUJ49_16380 PF02777 Iron/manganese superoxide dismutases, C-terminal domain IUJ49_16385 PF04333 MlaA lipoprotein IUJ49_16390 PF03918 Cytochrome C biogenesis protein IUJ49_16395 PF03918 Cytochrome C biogenesis protein IUJ49_16400 PF08534 Redoxin IUJ49_16405 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal IUJ49_16405 PF01578 Cytochrome C assembly protein IUJ49_16410 PF03100 CcmE IUJ49_16415 PF04995 Heme exporter protein D (CcmD) IUJ49_16420 PF01578 Cytochrome C assembly protein IUJ49_16425 PF03379 CcmB protein IUJ49_16430 PF00005 ABC transporter IUJ49_16440 PF01584 CheW-like domain IUJ49_16450 PF13614 AAA domain IUJ49_16455 PF00691 OmpA family IUJ49_16455 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ49_16460 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_16465 PF00072 Response regulator receiver domain IUJ49_16465 PF01339 CheB methylesterase IUJ49_16470 PF00072 Response regulator receiver domain IUJ49_16470 PF01627 Hpt domain IUJ49_16470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_16470 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ49_16470 PF01584 CheW-like domain IUJ49_16475 PF04344 Chemotaxis phosphatase, CheZ IUJ49_16480 PF00072 Response regulator receiver domain IUJ49_16485 PF04539 Sigma-70 region 3 IUJ49_16485 PF04545 Sigma-70, region 4 IUJ49_16485 PF04542 Sigma-70 region 2 IUJ49_16490 PF10609 NUBPL iron-transfer P-loop NTPase IUJ49_16495 PF00448 SRP54-type protein, GTPase domain IUJ49_16500 PF00771 FHIPEP family IUJ49_16505 PF01312 FlhB HrpN YscU SpaS Family IUJ49_16510 PF01311 Bacterial export proteins, family 1 IUJ49_16515 PF01313 Bacterial export proteins, family 3 IUJ49_16520 PF00813 FliP family IUJ49_16525 PF04347 Flagellar biosynthesis protein, FliO IUJ49_16530 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ49_16535 PF02154 Flagellar motor switch protein FliM IUJ49_16535 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ49_16555 PF18269 T3SS EscN ATPase C-terminal domain IUJ49_16555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_16565 PF01706 FliG C-terminal domain IUJ49_16565 PF14842 FliG N-terminal domain IUJ49_16565 PF14841 FliG middle domain IUJ49_16570 PF08345 Flagellar M-ring protein C-terminal IUJ49_16570 PF01514 Secretory protein of YscJ/FliF family IUJ49_16575 PF02049 Flagellar hook-basal body complex protein FliE IUJ49_16585 PF00072 Response regulator receiver domain IUJ49_16590 PF04055 Radical SAM superfamily IUJ49_16590 PF18693 TRAM domain IUJ49_16590 PF00919 Uncharacterized protein family UPF0004 IUJ49_16595 PF00486 Transcriptional regulatory protein, C terminal IUJ49_16595 PF00072 Response regulator receiver domain IUJ49_16600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_16605 PF02685 Glucokinase IUJ49_16610 PF01380 SIS domain IUJ49_16610 PF01418 Helix-turn-helix domain, rpiR family IUJ49_16615 PF00224 Pyruvate kinase, barrel domain IUJ49_16615 PF02887 Pyruvate kinase, alpha/beta domain IUJ49_16625 PF00873 AcrB/AcrD/AcrF family IUJ49_16630 PF09317 Domain of unknown function (DUF1974) IUJ49_16630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ49_16630 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ49_16630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ49_16635 PF00440 Bacterial regulatory proteins, tetR family IUJ49_16680 PF00384 Molybdopterin oxidoreductase IUJ49_16685 PF02634 FdhD/NarQ family IUJ49_16690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_16690 PF03466 LysR substrate binding domain IUJ49_16710 PF00936 BMC domain IUJ49_16715 PF00936 BMC domain IUJ49_16720 PF00936 BMC domain IUJ49_16725 PF00171 Aldehyde dehydrogenase family IUJ49_16725 PF00465 Iron-containing alcohol dehydrogenase IUJ49_16735 PF00465 Iron-containing alcohol dehydrogenase IUJ49_16735 PF00171 Aldehyde dehydrogenase family IUJ49_16740 PF02901 Pyruvate formate lyase-like IUJ49_16740 PF01228 Glycine radical IUJ49_16745 PF13187 4Fe-4S dicluster domain IUJ49_16745 PF04055 Radical SAM superfamily IUJ49_16750 PF00936 BMC domain IUJ49_16755 PF06130 Phosphate propanoyltransferase IUJ49_16765 PF00893 Small Multidrug Resistance protein IUJ49_16770 PF00893 Small Multidrug Resistance protein IUJ49_16780 PF17969 L,D-transpeptidase C-terminal domain IUJ49_16780 PF01476 LysM domain IUJ49_16780 PF03734 L,D-transpeptidase catalytic domain IUJ49_16790 PF01575 MaoC like domain IUJ49_16795 PF05971 RNA methyltransferase IUJ49_16800 PF00877 NlpC/P60 family IUJ49_16805 PF01648 4'-phosphopantetheinyl transferase superfamily IUJ49_16810 PF00085 Thioredoxin IUJ49_16820 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase IUJ49_16825 PF00551 Formyl transferase IUJ49_16825 PF01842 ACT domain IUJ49_16835 PF13396 Phospholipase_D-nuclease N-terminal IUJ49_16835 PF13091 PLD-like domain IUJ49_16850 PF01551 Peptidase family M23 IUJ49_16855 PF00128 Alpha amylase, catalytic domain IUJ49_16860 PF01464 Transglycosylase SLT domain IUJ49_16860 PF10145 Phage-related minor tail protein IUJ49_16860 PF01551 Peptidase family M23 IUJ49_16865 PF00230 Major intrinsic protein IUJ49_16870 PF02075 Crossover junction endodeoxyribonuclease RuvC IUJ49_16880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold IUJ49_16930 PF11842 Domain of unknown function (DUF3362) IUJ49_16930 PF08497 Radical SAM N-terminal IUJ49_16930 PF04055 Radical SAM superfamily IUJ49_16940 PF00873 AcrB/AcrD/AcrF family IUJ49_16945 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_16945 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_16950 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_16955 PF01734 Patatin-like phospholipase IUJ49_16960 PF00209 Sodium:neurotransmitter symporter family IUJ49_16975 PF01389 OmpA-like transmembrane domain IUJ49_16975 PF00691 OmpA family IUJ49_16980 PF01389 OmpA-like transmembrane domain IUJ49_16980 PF00691 OmpA family IUJ49_16985 PF01389 OmpA-like transmembrane domain IUJ49_16985 PF00691 OmpA family IUJ49_16990 PF00390 Malic enzyme, N-terminal domain IUJ49_16990 PF03949 Malic enzyme, NAD binding domain IUJ49_16995 PF12833 Helix-turn-helix domain IUJ49_17000 PF01554 MatE IUJ49_17005 PF10692 Protein of unknown function (DUF2498) IUJ49_17010 PF00072 Response regulator receiver domain IUJ49_17010 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_17015 PF00860 Permease family IUJ49_17025 PF01235 Sodium:alanine symporter family IUJ49_17030 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain IUJ49_17030 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain IUJ49_17035 PF01699 Sodium/calcium exchanger protein IUJ49_17040 PF08534 Redoxin IUJ49_17050 PF00293 NUDIX domain IUJ49_17070 PF00005 ABC transporter IUJ49_17075 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ49_17075 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_17085 PF03932 CutC family IUJ49_17090 PF00480 ROK family IUJ49_17100 PF01435 Peptidase family M48 IUJ49_17105 PF12849 PBP superfamily domain IUJ49_17110 PF00989 PAS fold IUJ49_17110 PF11808 Phosphate regulon sensor protein PhoR IUJ49_17110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_17110 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_17115 PF00072 Response regulator receiver domain IUJ49_17115 PF00486 Transcriptional regulatory protein, C terminal IUJ49_17120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_17125 PF02515 CoA-transferase family III IUJ49_17130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain IUJ49_17130 PF02770 Acyl-CoA dehydrogenase, middle domain IUJ49_17130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain IUJ49_17135 PF00158 Sigma-54 interaction domain IUJ49_17135 PF02954 Bacterial regulatory protein, Fis family IUJ49_17135 PF01590 GAF domain IUJ49_17140 PF00171 Aldehyde dehydrogenase family IUJ49_17150 PF00892 EamA-like transporter family IUJ49_17170 PF12431 Transcriptional regulator IUJ49_17170 PF00072 Response regulator receiver domain IUJ49_17175 PF17203 Single cache domain 3 IUJ49_17175 PF00989 PAS fold IUJ49_17175 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain IUJ49_17175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_17180 PF00390 Malic enzyme, N-terminal domain IUJ49_17180 PF03949 Malic enzyme, NAD binding domain IUJ49_17185 PF03390 2-hydroxycarboxylate transporter family IUJ49_17190 PF01047 MarR family IUJ49_17195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_17195 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_17220 PF01679 Proteolipid membrane potential modulator IUJ49_17230 PF03477 ATP cone domain IUJ49_17230 PF13597 Anaerobic ribonucleoside-triphosphate reductase IUJ49_17240 PF12826 Helix-hairpin-helix motif IUJ49_17240 PF00533 BRCA1 C Terminus (BRCT) domain IUJ49_17240 PF01653 NAD-dependent DNA ligase adenylation domain IUJ49_17240 PF03120 NAD-dependent DNA ligase OB-fold domain IUJ49_17240 PF03119 NAD-dependent DNA ligase C4 zinc finger domain IUJ49_17245 PF04354 ZipA, C-terminal FtsZ-binding domain IUJ49_17250 PF06470 SMC proteins Flexible Hinge Domain IUJ49_17250 PF02463 RecF/RecN/SMC N terminal domain IUJ49_17260 PF03458 UPF0126 domain IUJ49_17270 PF05951 Bacterial protein of unknown function (DUF882) IUJ49_17275 PF01471 Putative peptidoglycan binding domain IUJ49_17275 PF03734 L,D-transpeptidase catalytic domain IUJ49_17290 PF00535 Glycosyl transferase family 2 IUJ49_17305 PF00128 Alpha amylase, catalytic domain IUJ49_17315 PF00196 Bacterial regulatory proteins, luxR family IUJ49_17315 PF00072 Response regulator receiver domain IUJ49_17340 PF02080 TrkA-C domain IUJ49_17340 PF00999 Sodium/hydrogen exchanger family IUJ49_17340 PF02254 TrkA-N domain IUJ49_17345 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_17350 PF01171 PP-loop family IUJ49_17350 PF09179 TilS substrate binding domain IUJ49_17350 PF11734 TilS substrate C-terminal domain IUJ49_17355 PF01431 Peptidase family M13 IUJ49_17355 PF05649 Peptidase family M13 IUJ49_17365 PF12848 ABC transporter IUJ49_17365 PF16326 ABC transporter C-terminal domain IUJ49_17365 PF00005 ABC transporter IUJ49_17370 PF13302 Acetyltransferase (GNAT) domain IUJ49_17375 PF13520 Amino acid permease IUJ49_17380 PF03466 LysR substrate binding domain IUJ49_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_17385 PF12706 Beta-lactamase superfamily domain IUJ49_17395 PF03466 LysR substrate binding domain IUJ49_17395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_17405 PF08543 Phosphomethylpyrimidine kinase IUJ49_17410 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain IUJ49_17410 PF01276 Orn/Lys/Arg decarboxylase, major domain IUJ49_17410 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain IUJ49_17415 PF13520 Amino acid permease IUJ49_17420 PF18500 CadC C-terminal domain 1 IUJ49_17420 PF00486 Transcriptional regulatory protein, C terminal IUJ49_17425 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit IUJ49_17430 PF07733 Bacterial DNA polymerase III alpha NTPase domain IUJ49_17430 PF17657 Bacterial DNA polymerase III alpha subunit finger domain IUJ49_17430 PF14579 Helix-hairpin-helix motif IUJ49_17430 PF02811 PHP domain IUJ49_17430 PF01336 OB-fold nucleic acid binding domain IUJ49_17435 PF01351 Ribonuclease HII IUJ49_17440 PF02684 Lipid-A-disaccharide synthetase IUJ49_17445 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 IUJ49_17445 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_17450 PF07977 FabA-like domain IUJ49_17455 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_17455 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD IUJ49_17460 PF03938 Outer membrane protein (OmpH-like) IUJ49_17465 PF01103 Surface antigen IUJ49_17465 PF07244 Surface antigen variable number repeat IUJ49_17470 PF17820 PDZ domain IUJ49_17470 PF02163 Peptidase family M50 IUJ49_17475 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain IUJ49_17475 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase IUJ49_17475 PF13288 DXP reductoisomerase C-terminal domain IUJ49_17485 PF01255 Putative undecaprenyl diphosphate synthase IUJ49_17490 PF01765 Ribosome recycling factor IUJ49_17495 PF00696 Amino acid kinase family IUJ49_17500 PF00889 Elongation factor TS IUJ49_17505 PF00318 Ribosomal protein S2 IUJ49_17510 PF00557 Metallopeptidase family M24 IUJ49_17515 PF01966 HD domain IUJ49_17515 PF08335 GlnD PII-uridylyltransferase IUJ49_17515 PF01842 ACT domain IUJ49_17515 PF01909 Nucleotidyltransferase domain IUJ49_17520 PF14602 Hexapeptide repeat of succinyl-transferase IUJ49_17520 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_17520 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal IUJ49_17525 PF11944 Protein of unknown function (DUF3461) IUJ49_17530 PF00367 phosphotransferase system, EIIB IUJ49_17530 PF02378 Phosphotransferase system, EIIC IUJ49_17535 PF07148 Maltose operon periplasmic protein precursor (MalM) IUJ49_17540 PF02264 LamB porin IUJ49_17545 PF00258 Flavodoxin IUJ49_17550 PF00849 RNA pseudouridylate synthase IUJ49_17555 PF04287 tRNA pseudouridine synthase C IUJ49_17580 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) IUJ49_17585 PF07348 Syd protein (SUKH-2) IUJ49_17590 PF14489 QueF-like protein IUJ49_17590 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term IUJ49_17600 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_17605 PF11892 Domain of unknown function (DUF3412) IUJ49_17605 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases IUJ49_17605 PF03641 Possible lysine decarboxylase IUJ49_17610 PF01367 5'-3' exonuclease, C-terminal SAM fold IUJ49_17610 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain IUJ49_17615 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ49_17615 PF18324 Hypothetical protein TT1725 IUJ49_17625 PF18125 RlmM ferredoxin-like domain IUJ49_17625 PF01728 FtsJ-like methyltransferase IUJ49_17630 PF04241 Protein of unknown function (DUF423) IUJ49_17640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_17640 PF03466 LysR substrate binding domain IUJ49_17645 PF00672 HAMP domain IUJ49_17645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_17650 PF11799 impB/mucB/samB family C-terminal domain IUJ49_17650 PF11798 IMS family HHH motif IUJ49_17650 PF00817 impB/mucB/samB family IUJ49_17665 PF02424 ApbE family IUJ49_17670 PF00970 Oxidoreductase FAD-binding domain IUJ49_17670 PF00175 Oxidoreductase NAD-binding domain IUJ49_17670 PF00111 2Fe-2S iron-sulfur cluster binding domain IUJ49_17675 PF02508 Rnf-Nqr subunit, membrane protein IUJ49_17680 PF02508 Rnf-Nqr subunit, membrane protein IUJ49_17685 PF04205 FMN-binding domain IUJ49_17690 PF03116 NQR2, RnfD, RnfE family IUJ49_17695 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) IUJ49_17695 PF11973 NQRA C-terminal domain IUJ49_17700 PF01722 BolA-like protein IUJ49_17705 PF05175 Methyltransferase small domain IUJ49_17715 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD IUJ49_17725 PF07690 Major Facilitator Superfamily IUJ49_17730 PF03502 Nucleoside-specific channel-forming protein, Tsx IUJ49_17735 PF04461 Protein of unknown function (DUF520) IUJ49_17740 PF08546 Ketopantoate reductase PanE/ApbA C terminal IUJ49_17740 PF02558 Ketopantoate reductase PanE/ApbA IUJ49_17745 PF01965 DJ-1/PfpI family IUJ49_17750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_17750 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ49_17750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ49_17755 PF03306 Alpha-acetolactate decarboxylase IUJ49_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_17760 PF03466 LysR substrate binding domain IUJ49_17785 PF13503 Domain of unknown function (DUF4123) IUJ49_17790 PF04717 Type VI secretion system, phage-baseplate injector IUJ49_17795 PF05638 Type VI secretion system effector, Hcp IUJ49_17800 PF03472 Autoinducer binding domain IUJ49_17800 PF00196 Bacterial regulatory proteins, luxR family IUJ49_17810 PF13462 Thioredoxin IUJ49_17810 PF06965 Na+/H+ antiporter 1 IUJ49_17815 PF16363 GDP-mannose 4,6 dehydratase IUJ49_17820 PF00175 Oxidoreductase NAD-binding domain IUJ49_17820 PF00042 Globin IUJ49_17820 PF00970 Oxidoreductase FAD-binding domain IUJ49_17825 PF03063 Prismane/CO dehydrogenase family IUJ49_17830 PF00210 Ferritin-like domain IUJ49_17870 PF00106 short chain dehydrogenase IUJ49_17880 PF03441 FAD binding domain of DNA photolyase IUJ49_17880 PF00875 DNA photolyase IUJ49_17885 PF13411 MerR HTH family regulatory protein IUJ49_17890 PF08349 Protein of unknown function (DUF1722) IUJ49_17920 PF01817 Chorismate mutase type II IUJ49_17920 PF00800 Prephenate dehydratase IUJ49_17955 PF00672 HAMP domain IUJ49_17955 PF02743 Cache domain IUJ49_17955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_17960 PF03573 outer membrane porin, OprD family IUJ49_17965 PF00106 short chain dehydrogenase IUJ49_17990 PF02074 Carboxypeptidase Taq (M32) metallopeptidase IUJ49_18000 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ49_18000 PF06029 AlkA N-terminal domain IUJ49_18000 PF02805 Metal binding domain of Ada IUJ49_18000 PF12833 Helix-turn-helix domain IUJ49_18005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain IUJ49_18005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain IUJ49_18020 PF01136 Peptidase family U32 IUJ49_18020 PF12392 Collagenase IUJ49_18025 PF01810 LysE type translocator IUJ49_18030 PF03466 LysR substrate binding domain IUJ49_18030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_18035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III IUJ49_18035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal IUJ49_18040 PF02743 Cache domain IUJ49_18040 PF00672 HAMP domain IUJ49_18040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_18045 PF00072 Response regulator receiver domain IUJ49_18055 PF07194 P2 response regulator binding domain IUJ49_18055 PF01627 Hpt domain IUJ49_18055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_18055 PF01584 CheW-like domain IUJ49_18055 PF02895 Signal transducing histidine kinase, homodimeric domain IUJ49_18060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_18060 PF00672 HAMP domain IUJ49_18060 PF12729 Four helix bundle sensory module for signal transduction IUJ49_18065 PF01584 CheW-like domain IUJ49_18070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_18070 PF02203 Tar ligand binding domain homologue IUJ49_18070 PF00672 HAMP domain IUJ49_18075 PF01739 CheR methyltransferase, SAM binding domain IUJ49_18075 PF03705 CheR methyltransferase, all-alpha domain IUJ49_18080 PF03975 CheD chemotactic sensory transduction IUJ49_18085 PF01339 CheB methylesterase IUJ49_18085 PF00072 Response regulator receiver domain IUJ49_18090 PF00266 Aminotransferase class-V IUJ49_18115 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_18115 PF00989 PAS fold IUJ49_18115 PF01590 GAF domain IUJ49_18115 PF00563 EAL domain IUJ49_18120 PF16325 Peptidase family U32 C-terminal domain IUJ49_18120 PF01136 Peptidase family U32 IUJ49_18125 PF12838 4Fe-4S dicluster domain IUJ49_18130 PF00842 Alanine racemase, C-terminal domain IUJ49_18130 PF01168 Alanine racemase, N-terminal domain IUJ49_18135 PF03796 DnaB-like helicase C terminal domain IUJ49_18135 PF00772 DnaB-like helicase N terminal domain IUJ49_18145 PF12792 CSS motif domain associated with EAL IUJ49_18145 PF00563 EAL domain IUJ49_18150 PF02872 5'-nucleotidase, C-terminal domain IUJ49_18150 PF00149 Calcineurin-like phosphoesterase IUJ49_18170 PF00158 Sigma-54 interaction domain IUJ49_18170 PF02954 Bacterial regulatory protein, Fis family IUJ49_18170 PF00072 Response regulator receiver domain IUJ49_18175 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_18175 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase IUJ49_18185 PF04102 SlyX IUJ49_18190 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase IUJ49_18195 PF09526 Probable metal-binding protein (DUF2387) IUJ49_18205 PF00072 Response regulator receiver domain IUJ49_18205 PF01584 CheW-like domain IUJ49_18210 PF00561 alpha/beta hydrolase fold IUJ49_18215 PF00563 EAL domain IUJ49_18215 PF00360 Phytochrome region IUJ49_18215 PF01590 GAF domain IUJ49_18215 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_18220 PF06794 Uncharacterised protein family (UPF0270) IUJ49_18225 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain IUJ49_18225 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain IUJ49_18225 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain IUJ49_18230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family IUJ49_18235 PF00535 Glycosyl transferase family 2 IUJ49_18240 PF00551 Formyl transferase IUJ49_18240 PF01370 NAD dependent epimerase/dehydratase family IUJ49_18240 PF02911 Formyl transferase, C-terminal domain IUJ49_18245 PF01522 Polysaccharide deacetylase IUJ49_18250 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase IUJ49_18255 PF00892 EamA-like transporter family IUJ49_18260 PF00893 Small Multidrug Resistance protein IUJ49_18265 PF00485 Phosphoribulokinase / Uridine kinase family IUJ49_18280 PF02566 OsmC-like protein IUJ49_18285 PF00027 Cyclic nucleotide-binding domain IUJ49_18285 PF13545 Crp-like helix-turn-helix domain IUJ49_18295 PF18416 N-acetylglucosamine binding protein domain 2 IUJ49_18295 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading IUJ49_18300 PF17945 Beta/Gamma crystallin IUJ49_18300 PF12561 ToxR activated gene A lipoprotein domain IUJ49_18305 PF00704 Glycosyl hydrolases family 18 IUJ49_18305 PF08329 Chitinase A, N-terminal domain IUJ49_18310 PF00989 PAS fold IUJ49_18310 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_18310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_18320 PF13443 Cro/C1-type HTH DNA-binding domain IUJ49_18325 PF12832 MFS_1 like family IUJ49_18330 PF07715 TonB-dependent Receptor Plug Domain IUJ49_18330 PF00593 TonB dependent receptor IUJ49_18350 PF01243 Pyridoxamine 5'-phosphate oxidase IUJ49_18355 PF06228 Haem utilisation ChuX/HutX IUJ49_18365 PF01032 FecCD transport family IUJ49_18370 PF00005 ABC transporter IUJ49_18380 PF01370 NAD dependent epimerase/dehydratase family IUJ49_18390 PF01791 DeoC/LacD family aldolase IUJ49_18395 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ49_18395 PF07670 Nucleoside recognition IUJ49_18395 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ49_18400 PF01048 Phosphorylase superfamily IUJ49_18405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_18405 PF03466 LysR substrate binding domain IUJ49_18420 PF01464 Transglycosylase SLT domain IUJ49_18425 PF01048 Phosphorylase superfamily IUJ49_18440 PF00005 ABC transporter IUJ49_18440 PF12848 ABC transporter IUJ49_18450 PF00860 Permease family IUJ49_18455 PF05099 Tellurite resistance protein TerB IUJ49_18455 PF00226 DnaJ domain IUJ49_18460 PF00483 Nucleotidyl transferase IUJ49_18465 PF01636 Phosphotransferase enzyme family IUJ49_18470 PF04453 LPS transport system D IUJ49_18470 PF03968 OstA-like protein IUJ49_18475 PF00639 PPIC-type PPIASE domain IUJ49_18475 PF09312 SurA N-terminal domain IUJ49_18480 PF04166 Pyridoxal phosphate biosynthetic protein PdxA IUJ49_18485 PF00398 Ribosomal RNA adenine dimethylase IUJ49_18490 PF04379 ApaG domain IUJ49_18495 PF00149 Calcineurin-like phosphoesterase IUJ49_18505 PF00296 Luciferase-like monooxygenase IUJ49_18525 PF00501 AMP-binding enzyme IUJ49_18525 PF13193 AMP-binding enzyme C-terminal domain IUJ49_18530 PF07670 Nucleoside recognition IUJ49_18535 PF01926 50S ribosome-binding GTPase IUJ49_18535 PF01018 GTP1/OBG IUJ49_18540 PF01016 Ribosomal L27 protein IUJ49_18545 PF00829 Ribosomal prokaryotic L21 protein IUJ49_18550 PF00348 Polyprenyl synthetase IUJ49_18555 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) IUJ49_18560 PF01145 SPFH domain / Band 7 family IUJ49_18565 PF01145 SPFH domain / Band 7 family IUJ49_18565 PF12221 Bacterial membrane protein N terminal IUJ49_18570 PF16360 GTP-binding GTPase Middle Region IUJ49_18570 PF13167 GTP-binding GTPase N-terminal IUJ49_18570 PF01926 50S ribosome-binding GTPase IUJ49_18575 PF17209 Hfq protein IUJ49_18585 PF08676 MutL C terminal dimerisation domain IUJ49_18585 PF01119 DNA mismatch repair protein, C-terminal domain IUJ49_18590 PF01520 N-acetylmuramoyl-L-alanine amidase IUJ49_18595 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE IUJ49_18600 PF03853 YjeF-related protein N-terminus IUJ49_18600 PF01256 Carbohydrate kinase IUJ49_18605 PF08331 Domain of unknown function (DUF1730) IUJ49_18610 PF00480 ROK family IUJ49_18620 PF09383 NIL domain IUJ49_18620 PF00005 ABC transporter IUJ49_18625 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_18630 PF03180 NLPA lipoprotein IUJ49_18635 PF02357 Transcription termination factor nusG IUJ49_18640 PF00672 HAMP domain IUJ49_18640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_18640 PF12729 Four helix bundle sensory module for signal transduction IUJ49_18645 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_18645 PF00563 EAL domain IUJ49_18645 PF03707 Bacterial signalling protein N terminal repeat IUJ49_18650 PF09456 RcsC Alpha-Beta-Loop (ABL) IUJ49_18650 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_18650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_18650 PF00072 Response regulator receiver domain IUJ49_18660 PF01966 HD domain IUJ49_18660 PF13286 Phosphohydrolase-associated domain IUJ49_18665 PF00072 Response regulator receiver domain IUJ49_18665 PF00989 PAS fold IUJ49_18665 PF18415 Histidine kinase receptor ArcB trans-membrane domain IUJ49_18665 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_18665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_18665 PF01627 Hpt domain IUJ49_18685 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) IUJ49_18690 PF03466 LysR substrate binding domain IUJ49_18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_18700 PF01259 SAICAR synthetase IUJ49_18705 PF06804 NlpB/DapX lipoprotein IUJ49_18710 PF00701 Dihydrodipicolinate synthetase family IUJ49_18715 PF01842 ACT domain IUJ49_18720 PF00578 AhpC/TSA family IUJ49_18725 PF03887 YfbU domain IUJ49_18730 PF04217 Protein of unknown function, DUF412 IUJ49_18735 PF00871 Acetokinase family IUJ49_18740 PF07085 DRTGG domain IUJ49_18740 PF01515 Phosphate acetyl/butaryl transferase IUJ49_18745 PF10369 Small subunit of acetolactate synthase IUJ49_18750 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain IUJ49_18750 PF00205 Thiamine pyrophosphate enzyme, central domain IUJ49_18750 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain IUJ49_18760 PF03033 Glycosyltransferase family 28 N-terminal domain IUJ49_18760 PF04101 Glycosyltransferase family 28 C-terminal domain IUJ49_18765 PF01569 PAP2 superfamily IUJ49_18775 PF08502 LeuA allosteric (dimerisation) domain IUJ49_18775 PF00682 HMGL-like IUJ49_18780 PF00180 Isocitrate/isopropylmalate dehydrogenase IUJ49_18785 PF00330 Aconitase family (aconitate hydratase) IUJ49_18790 PF00694 Aconitase C-terminal domain IUJ49_18810 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_18815 PF00005 ABC transporter IUJ49_18820 PF13638 PIN domain IUJ49_18820 PF02562 PhoH-like protein IUJ49_18830 PF08343 Ribonucleotide reductase N-terminal IUJ49_18830 PF00317 Ribonucleotide reductase, all-alpha domain IUJ49_18830 PF02867 Ribonucleotide reductase, barrel domain IUJ49_18860 PF01521 Iron-sulphur cluster biosynthesis IUJ49_18870 PF00654 Voltage gated chloride channel IUJ49_18875 PF00202 Aminotransferase class-III IUJ49_18890 PF01569 PAP2 superfamily IUJ49_18900 PF11849 Domain of unknown function (DUF3369) IUJ49_18910 PF00893 Small Multidrug Resistance protein IUJ49_18915 PF00893 Small Multidrug Resistance protein IUJ49_18920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_18925 PF14814 Bifunctional transglycosylase second domain IUJ49_18925 PF00912 Transglycosylase IUJ49_18925 PF00905 Penicillin binding protein transpeptidase domain IUJ49_18930 PF00271 Helicase conserved C-terminal domain IUJ49_18930 PF08482 ATP-dependent helicase C-terminal IUJ49_18930 PF04408 Helicase associated domain (HA2) IUJ49_18930 PF00270 DEAD/DEAH box helicase IUJ49_18940 PF03749 Sugar fermentation stimulation protein RE domain IUJ49_18940 PF17746 SfsA N-terminal OB domain IUJ49_18945 PF01258 Prokaryotic dksA/traR C4-type zinc finger IUJ49_18950 PF00749 tRNA synthetases class I (E and Q), catalytic domain IUJ49_18955 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ49_18955 PF01743 Poly A polymerase head domain IUJ49_18955 PF12626 Polymerase A arginine-rich C-terminus IUJ49_18960 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUJ49_18965 PF02548 Ketopantoate hydroxymethyltransferase IUJ49_18970 PF02569 Pantoate-beta-alanine ligase IUJ49_18990 PF01869 BadF/BadG/BcrA/BcrD ATPase family IUJ49_18995 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component IUJ49_19000 PF01061 ABC-2 type transporter IUJ49_19005 PF00005 ABC transporter IUJ49_19010 PF00156 Phosphoribosyl transferase domain IUJ49_19015 PF00440 Bacterial regulatory proteins, tetR family IUJ49_19020 PF02441 Flavoprotein IUJ49_19025 PF01225 Mur ligase family, catalytic domain IUJ49_19025 PF02875 Mur ligase family, glutamate ligase domain IUJ49_19025 PF08245 Mur ligase middle domain IUJ49_19030 PF00719 Inorganic pyrophosphatase IUJ49_19045 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) IUJ49_19060 PF00005 ABC transporter IUJ49_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_19080 PF08447 PAS fold IUJ49_19085 PF13289 SIR2-like domain IUJ49_19095 PF03600 Citrate transporter IUJ49_19095 PF02080 TrkA-C domain IUJ49_19100 PF00009 Elongation factor Tu GTP binding domain IUJ49_19105 PF01507 Phosphoadenosine phosphosulfate reductase family IUJ49_19110 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ49_19110 PF10414 Sirohaem synthase dimerisation region IUJ49_19110 PF14824 Sirohaem biosynthesis protein central IUJ49_19115 PF16200 C-terminal region of band_7 IUJ49_19115 PF01145 SPFH domain / Band 7 family IUJ49_19120 PF01957 NfeD-like C-terminal, partner-binding IUJ49_19125 PF01380 SIS domain IUJ49_19125 PF00571 CBS domain IUJ49_19130 PF00005 ABC transporter IUJ49_19130 PF12848 ABC transporter IUJ49_19140 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ IUJ49_19145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_19145 PF03466 LysR substrate binding domain IUJ49_19150 PF02525 Flavodoxin-like fold IUJ49_19175 PF00561 alpha/beta hydrolase fold IUJ49_19180 PF00474 Sodium:solute symporter family IUJ49_19185 PF03734 L,D-transpeptidase catalytic domain IUJ49_19185 PF17969 L,D-transpeptidase C-terminal domain IUJ49_19190 PF00924 Mechanosensitive ion channel IUJ49_19195 PF00871 Acetokinase family IUJ49_19200 PF04074 YhcH/YjgK/YiaL IUJ49_19210 PF00394 Multicopper oxidase IUJ49_19210 PF07731 Multicopper oxidase IUJ49_19210 PF07732 Multicopper oxidase IUJ49_19215 PF01177 Asp/Glu/Hydantoin racemase IUJ49_19220 PF01810 LysE type translocator IUJ49_19230 PF00155 Aminotransferase class I and II IUJ49_19230 PF00392 Bacterial regulatory proteins, gntR family IUJ49_19255 PF00209 Sodium:neurotransmitter symporter family IUJ49_19265 PF00209 Sodium:neurotransmitter symporter family IUJ49_19285 PF07690 Major Facilitator Superfamily IUJ49_19295 PF01037 Lrp/AsnC ligand binding domain IUJ49_19310 PF01047 MarR family IUJ49_19315 PF02566 OsmC-like protein IUJ49_19320 PF16884 N-terminal domain of oxidoreductase IUJ49_19320 PF00107 Zinc-binding dehydrogenase IUJ49_19325 PF00293 NUDIX domain IUJ49_19335 PF01641 SelR domain IUJ49_19340 PF00128 Alpha amylase, catalytic domain IUJ49_19340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ49_19345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) IUJ49_19345 PF00128 Alpha amylase, catalytic domain IUJ49_19345 PF02806 Alpha amylase, C-terminal all-beta domain IUJ49_19350 PF02446 4-alpha-glucanotransferase IUJ49_19355 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain IUJ49_19355 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain IUJ49_19360 PF01263 Aldose 1-epimerase IUJ49_19365 PF02445 Quinolinate synthetase A protein IUJ49_19370 PF00672 HAMP domain IUJ49_19370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_19445 PF13174 Tetratricopeptide repeat IUJ49_19445 PF16331 TolA binding protein trimerisation IUJ49_19450 PF00691 OmpA family IUJ49_19455 PF07676 WD40-like Beta Propeller Repeat IUJ49_19455 PF04052 TolB amino-terminal domain IUJ49_19465 PF02472 Biopolymer transport protein ExbD/TolR IUJ49_19470 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_19475 PF03061 Thioesterase superfamily IUJ49_19480 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) IUJ49_19485 PF08173 Membrane bound YbgT-like protein IUJ49_19490 PF02322 Cytochrome bd terminal oxidase subunit II IUJ49_19495 PF01654 Cytochrome bd terminal oxidase subunit I IUJ49_19500 PF05496 Holliday junction DNA helicase RuvB P-loop domain IUJ49_19500 PF05491 RuvB C-terminal winged helix domain IUJ49_19500 PF17864 RuvB AAA lid domain IUJ49_19505 PF07499 RuvA, C-terminal domain IUJ49_19505 PF01330 RuvA N terminal domain IUJ49_19510 PF00672 HAMP domain IUJ49_19510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_19515 PF04073 Aminoacyl-tRNA editing domain IUJ49_19515 PF03129 Anticodon binding domain IUJ49_19515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) IUJ49_19520 PF00106 short chain dehydrogenase IUJ49_19535 PF00378 Enoyl-CoA hydratase/isomerase IUJ49_19540 PF10952 Protein of unknown function (DUF2753) IUJ49_19545 PF00132 Bacterial transferase hexapeptide (six repeats) IUJ49_19555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle IUJ49_19570 PF02594 Uncharacterised ACR, YggU family COG1872 IUJ49_19575 PF02325 YGGT family IUJ49_19580 PF03807 NADP oxidoreductase coenzyme F420-dependent IUJ49_19580 PF14748 Pyrroline-5-carboxylate reductase dimerisation IUJ49_19585 PF01168 Alanine racemase, N-terminal domain IUJ49_19590 PF00437 Type II/IV secretion system protein IUJ49_19595 PF00437 Type II/IV secretion system protein IUJ49_19600 PF03883 Peroxide stress protein YaaA IUJ49_19605 PF00271 Helicase conserved C-terminal domain IUJ49_19605 PF00270 DEAD/DEAH box helicase IUJ49_19610 PF05175 Methyltransferase small domain IUJ49_19615 PF05525 Branched-chain amino acid transport protein IUJ49_19620 PF05525 Branched-chain amino acid transport protein IUJ49_19635 PF01475 Ferric uptake regulator family IUJ49_19640 PF01207 Dihydrouridine synthase (Dus) IUJ49_19655 PF00216 Bacterial DNA-binding protein IUJ49_19665 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ IUJ49_19670 PF07238 PilZ domain IUJ49_19675 PF18073 Rubredoxin metal binding domain IUJ49_19690 PF18429 Domain of unknown function (DUF5609) IUJ49_19700 PF13426 PAS domain IUJ49_19700 PF00563 EAL domain IUJ49_19700 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_19700 PF05231 MASE1 IUJ49_19700 PF08447 PAS fold IUJ49_19700 PF08448 PAS fold IUJ49_19705 PF01048 Phosphorylase superfamily IUJ49_19710 PF01676 Metalloenzyme superfamily IUJ49_19715 PF00591 Glycosyl transferase family, a/b domain IUJ49_19715 PF02885 Glycosyl transferase family, helical bundle domain IUJ49_19715 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain IUJ49_19720 PF01791 DeoC/LacD family aldolase IUJ49_19730 PF07670 Nucleoside recognition IUJ49_19730 PF07662 Na+ dependent nucleoside transporter C-terminus IUJ49_19730 PF01773 Na+ dependent nucleoside transporter N-terminus IUJ49_19735 PF01026 TatD related DNase IUJ49_19740 PF07963 Prokaryotic N-terminal methylation motif IUJ49_19750 PF01938 TRAM domain IUJ49_19750 PF05958 tRNA (Uracil-5-)-methyltransferase IUJ49_19755 PF00909 Ammonium Transporter Family IUJ49_19760 PF02899 Phage integrase, N-terminal SAM-like domain IUJ49_19760 PF00589 Phage integrase family IUJ49_19770 PF00717 Peptidase S24-like IUJ49_19770 PF01381 Helix-turn-helix IUJ49_19780 PF06892 Phage regulatory protein CII (CP76) IUJ49_19820 PF05840 Bacteriophage replication gene A protein (GPA) IUJ49_19985 PF03739 Lipopolysaccharide export system permease LptF/LptG IUJ49_19990 PF03739 Lipopolysaccharide export system permease LptF/LptG IUJ49_19995 PF00883 Cytosol aminopeptidase family, catalytic domain IUJ49_19995 PF02789 Cytosol aminopeptidase family, N-terminal domain IUJ49_20000 PF04364 DNA polymerase III chi subunit, HolC IUJ49_20005 PF08264 Anticodon-binding domain of tRNA IUJ49_20005 PF00133 tRNA synthetases class I (I, L, M and V) IUJ49_20005 PF10458 Valyl tRNA synthetase tRNA binding arm IUJ49_20010 PF00571 CBS domain IUJ49_20010 PF03471 Transporter associated domain IUJ49_20010 PF01595 Cyclin M transmembrane N-terminal domain IUJ49_20015 PF09335 SNARE associated Golgi protein IUJ49_20020 PF00768 D-alanyl-D-alanine carboxypeptidase IUJ49_20055 PF02599 Global regulator protein family IUJ49_20060 PF01842 ACT domain IUJ49_20060 PF00696 Amino acid kinase family IUJ49_20060 PF13840 ACT domain IUJ49_20065 PF02272 DHHA1 domain IUJ49_20065 PF01411 tRNA synthetases class II (A) IUJ49_20065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain IUJ49_20070 PF02631 RecX family IUJ49_20075 PF00154 recA bacterial DNA recombination protein IUJ49_20080 PF02464 Competence-damaged protein IUJ49_20085 PF05188 MutS domain II IUJ49_20085 PF05190 MutS family domain IV IUJ49_20085 PF01624 MutS domain I IUJ49_20085 PF00488 MutS domain V IUJ49_20085 PF05192 MutS domain III IUJ49_20090 PF02028 BCCT, betaine/carnitine/choline family transporter IUJ49_20105 PF04222 Protein of unknown function (DUF416) IUJ49_20110 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain IUJ49_20115 PF08525 Opacity-associated protein A N-terminal motif IUJ49_20115 PF01551 Peptidase family M23 IUJ49_20115 PF01476 LysM domain IUJ49_20135 PF01297 Zinc-uptake complex component A periplasmic IUJ49_20140 PF00005 ABC transporter IUJ49_20145 PF00950 ABC 3 transport family IUJ49_20150 PF03466 LysR substrate binding domain IUJ49_20150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_20155 PF00892 EamA-like transporter family IUJ49_20160 PF03167 Uracil DNA glycosylase superfamily IUJ49_20165 PF00892 EamA-like transporter family IUJ49_20175 PF01541 GIY-YIG catalytic domain IUJ49_20190 PF04012 PspA/IM30 family IUJ49_20195 PF01553 Acyltransferase IUJ49_20220 PF00578 AhpC/TSA family IUJ49_20225 PF00226 DnaJ domain IUJ49_20225 PF01556 DnaJ C terminal domain IUJ49_20225 PF00684 DnaJ central domain IUJ49_20265 PF13676 TIR domain IUJ49_20270 PF03989 DNA gyrase C-terminal domain, beta-propeller IUJ49_20270 PF00521 DNA gyrase/topoisomerase IV, subunit A IUJ49_20275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_20275 PF00204 DNA gyrase B IUJ49_20275 PF00986 DNA gyrase B subunit, carboxyl terminus IUJ49_20275 PF01751 Toprim domain IUJ49_20280 PF04632 Fusaric acid resistance protein family IUJ49_20285 PF00529 HlyD membrane-fusion protein of T1SS IUJ49_20285 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion IUJ49_20290 PF07869 Protein of unknown function (DUF1656) IUJ49_20300 PF00293 NUDIX domain IUJ49_20305 PF05728 Uncharacterised protein family (UPF0227) IUJ49_20310 PF00149 Calcineurin-like phosphoesterase IUJ49_20315 PF06853 Protein of unknown function (DUF1249) IUJ49_20320 PF00293 NUDIX domain IUJ49_20325 PF02321 Outer membrane efflux protein IUJ49_20330 PF01467 Cytidylyltransferase-like IUJ49_20330 PF00294 pfkB family carbohydrate kinase IUJ49_20335 PF03279 Bacterial lipid A biosynthesis acyltransferase IUJ49_20350 PF01865 Protein of unknown function DUF47 IUJ49_20355 PF01384 Phosphate transporter family IUJ49_20360 PF04073 Aminoacyl-tRNA editing domain IUJ49_20365 PF07350 Protein of unknown function (DUF1479) IUJ49_20385 PF00155 Aminotransferase class I and II IUJ49_20385 PF00392 Bacterial regulatory proteins, gntR family IUJ49_20390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_20390 PF03466 LysR substrate binding domain IUJ49_20395 PF03788 LrgA family IUJ49_20400 PF04172 LrgB-like family IUJ49_20415 PF01966 HD domain IUJ49_20415 PF01743 Poly A polymerase head domain IUJ49_20415 PF12627 Probable RNA and SrmB- binding site of polymerase A IUJ49_20420 PF13401 AAA domain IUJ49_20420 PF01471 Putative peptidoglycan binding domain IUJ49_20425 PF16537 Type II secretion system protein B IUJ49_20430 PF10576 Iron-sulfur binding domain of endonuclease III IUJ49_20430 PF14815 NUDIX domain IUJ49_20430 PF00633 Helix-hairpin-helix motif IUJ49_20430 PF00730 HhH-GPD superfamily base excision DNA repair protein IUJ49_20435 PF04362 Bacterial Fe(2+) trafficking IUJ49_20440 PF01464 Transglycosylase SLT domain IUJ49_20440 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain IUJ49_20445 PF04076 Bacterial OB fold (BOF) protein IUJ49_20450 PF00657 GDSL-like Lipase/Acylhydrolase IUJ49_20460 PF01389 OmpA-like transmembrane domain IUJ49_20460 PF00691 OmpA family IUJ49_20465 PF03886 ABC-type transport auxiliary lipoprotein component IUJ49_20470 PF02470 MlaD protein IUJ49_20475 PF04403 Paraquat-inducible protein A IUJ49_20480 PF17209 Hfq protein IUJ49_20485 PF13419 Haloacid dehalogenase-like hydrolase IUJ49_20495 PF00563 EAL domain IUJ49_20495 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_20495 PF01590 GAF domain IUJ49_20495 PF00360 Phytochrome region IUJ49_20500 PF00701 Dihydrodipicolinate synthetase family IUJ49_20505 PF05175 Methyltransferase small domain IUJ49_20505 PF08468 Methyltransferase small domain N-terminal IUJ49_20510 PF00483 Nucleotidyl transferase IUJ49_20515 PF00534 Glycosyl transferases group 1 IUJ49_20515 PF08323 Starch synthase catalytic domain IUJ49_20555 PF03553 Na+/H+ antiporter family IUJ49_20560 PF03466 LysR substrate binding domain IUJ49_20560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_20565 PF13416 Bacterial extracellular solute-binding protein IUJ49_20570 PF08402 TOBE domain IUJ49_20570 PF00005 ABC transporter IUJ49_20575 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_20580 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_20585 PF00171 Aldehyde dehydrogenase family IUJ49_20595 PF00892 EamA-like transporter family IUJ49_20600 PF01037 Lrp/AsnC ligand binding domain IUJ49_20605 PF12464 Maltose acetyltransferase IUJ49_20605 PF14602 Hexapeptide repeat of succinyl-transferase IUJ49_20610 PF00128 Alpha amylase, catalytic domain IUJ49_20610 PF11941 Domain of unknown function (DUF3459) IUJ49_20615 PF00367 phosphotransferase system, EIIB IUJ49_20615 PF02378 Phosphotransferase system, EIIC IUJ49_20620 PF00356 Bacterial regulatory proteins, lacI family IUJ49_20635 PF17763 Glutaminase/Asparaginase C-terminal domain IUJ49_20635 PF00710 Asparaginase, N-terminal IUJ49_20650 PF02142 MGS-like domain IUJ49_20660 PF00210 Ferritin-like domain IUJ49_20675 PF17176 tRNA-binding domain IUJ49_20675 PF05127 Helicase IUJ49_20675 PF13718 GNAT acetyltransferase 2 IUJ49_20675 PF08351 Domain of unknown function (DUF1726) IUJ49_20690 PF00072 Response regulator receiver domain IUJ49_20690 PF01584 CheW-like domain IUJ49_20695 PF07670 Nucleoside recognition IUJ49_20735 PF02660 Glycerol-3-phosphate acyltransferase IUJ49_20740 PF02152 Dihydroneopterin aldolase IUJ49_20745 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) IUJ49_20755 PF07690 Major Facilitator Superfamily IUJ49_20760 PF07683 Cobalamin synthesis protein cobW C-terminal domain IUJ49_20760 PF02492 CobW/HypB/UreG, nucleotide-binding domain IUJ49_20765 PF01565 FAD binding domain IUJ49_20765 PF04030 D-arabinono-1,4-lactone oxidase IUJ49_20770 PF01810 LysE type translocator IUJ49_20775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_20775 PF03466 LysR substrate binding domain IUJ49_20780 PF00563 EAL domain IUJ49_20780 PF12792 CSS motif domain associated with EAL IUJ49_20785 PF00330 Aconitase family (aconitate hydratase) IUJ49_20785 PF06434 Aconitate hydratase 2 N-terminus IUJ49_20785 PF11791 Aconitate B N-terminal domain IUJ49_20790 PF01734 Patatin-like phospholipase IUJ49_20795 PF12729 Four helix bundle sensory module for signal transduction IUJ49_20795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_20795 PF00672 HAMP domain IUJ49_20800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_20800 PF12729 Four helix bundle sensory module for signal transduction IUJ49_20800 PF00672 HAMP domain IUJ49_20810 PF08448 PAS fold IUJ49_20810 PF08447 PAS fold IUJ49_20810 PF05231 MASE1 IUJ49_20810 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_20810 PF00563 EAL domain IUJ49_20810 PF13426 PAS domain IUJ49_20815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain IUJ49_20815 PF07992 Pyridine nucleotide-disulphide oxidoreductase IUJ49_20820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) IUJ49_20820 PF00364 Biotin-requiring enzyme IUJ49_20820 PF02817 e3 binding domain IUJ49_20825 PF17831 Pyruvate dehydrogenase E1 component middle domain IUJ49_20825 PF00456 Transketolase, thiamine diphosphate binding domain IUJ49_20830 PF00392 Bacterial regulatory proteins, gntR family IUJ49_20830 PF07729 FCD domain IUJ49_20835 PF01510 N-acetylmuramoyl-L-alanine amidase IUJ49_20845 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain IUJ49_20845 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain IUJ49_20850 PF07963 Prokaryotic N-terminal methylation motif IUJ49_20855 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain IUJ49_20855 PF00437 Type II/IV secretion system protein IUJ49_20860 PF00482 Type II secretion system (T2SS), protein F IUJ49_20865 PF06750 Bacterial Peptidase A24 N-terminal domain IUJ49_20865 PF01478 Type IV leader peptidase family IUJ49_20870 PF01121 Dephospho-CoA kinase IUJ49_20875 PF07072 Cell division protein IUJ49_20880 PF03884 DNA gyrase inhibitor YacG IUJ49_20885 PF00293 NUDIX domain IUJ49_20895 PF07517 SecA DEAD-like domain IUJ49_20895 PF07516 SecA Wing and Scaffold domain IUJ49_20895 PF02810 SEC-C motif IUJ49_20895 PF01043 SecA preprotein cross-linking domain IUJ49_20905 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase IUJ49_20910 PF12327 FtsZ family, C-terminal domain IUJ49_20910 PF00091 Tubulin/FtsZ family, GTPase domain IUJ49_20915 PF02491 SHS2 domain inserted in FTSA IUJ49_20920 PF03799 Cell division protein FtsQ IUJ49_20920 PF08478 POTRA domain, FtsQ-type IUJ49_20925 PF08245 Mur ligase middle domain IUJ49_20925 PF02875 Mur ligase family, glutamate ligase domain IUJ49_20925 PF01225 Mur ligase family, catalytic domain IUJ49_20930 PF04101 Glycosyltransferase family 28 C-terminal domain IUJ49_20930 PF03033 Glycosyltransferase family 28 N-terminal domain IUJ49_20935 PF01098 Cell cycle protein IUJ49_20940 PF02875 Mur ligase family, glutamate ligase domain IUJ49_20940 PF08245 Mur ligase middle domain IUJ49_20945 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 IUJ49_20945 PF00953 Glycosyl transferase family 4 IUJ49_20950 PF01225 Mur ligase family, catalytic domain IUJ49_20950 PF02875 Mur ligase family, glutamate ligase domain IUJ49_20950 PF08245 Mur ligase middle domain IUJ49_20955 PF08245 Mur ligase middle domain IUJ49_20955 PF02875 Mur ligase family, glutamate ligase domain IUJ49_20955 PF01225 Mur ligase family, catalytic domain IUJ49_20960 PF00905 Penicillin binding protein transpeptidase domain IUJ49_20960 PF03717 Penicillin-binding Protein dimerisation domain IUJ49_20965 PF04999 Cell division protein FtsL IUJ49_20970 PF01795 MraW methylase family IUJ49_20975 PF02381 MraZ protein, putative antitoxin-like IUJ49_20985 PF01464 Transglycosylase SLT domain IUJ49_20985 PF01476 LysM domain IUJ49_20990 PF00691 OmpA family IUJ49_20990 PF13677 Membrane MotB of proton-channel complex MotA/MotB IUJ49_20995 PF01618 MotA/TolQ/ExbB proton channel family IUJ49_21000 PF04545 Sigma-70, region 4 IUJ49_21000 PF04542 Sigma-70 region 2 IUJ49_21020 PF02561 Flagellar protein FliS IUJ49_21025 PF07195 Flagellar hook-associated protein 2 C-terminus IUJ49_21025 PF07196 Flagellin hook IN motif IUJ49_21025 PF02465 Flagellar hook-associated protein 2 N-terminus IUJ49_21030 PF00669 Bacterial flagellin N-terminal helical region IUJ49_21030 PF00700 Bacterial flagellin C-terminal helical region IUJ49_21050 PF00669 Bacterial flagellin N-terminal helical region IUJ49_21055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_21055 PF00460 Flagella basal body rod protein IUJ49_21065 PF02119 Flagellar P-ring protein IUJ49_21070 PF02107 Flagellar L-ring protein IUJ49_21075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_21075 PF00460 Flagella basal body rod protein IUJ49_21080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_21080 PF00460 Flagella basal body rod protein IUJ49_21085 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_21085 PF00460 Flagella basal body rod protein IUJ49_21085 PF07559 Flagellar basal body protein FlaE IUJ49_21090 PF13861 FlgD Tudor-like domain IUJ49_21090 PF13860 FlgD Ig-like domain IUJ49_21090 PF03963 Flagellar hook capping protein - N-terminal region IUJ49_21095 PF06429 Flagellar basal body rod FlgEFG protein C-terminal IUJ49_21095 PF00460 Flagella basal body rod protein IUJ49_21100 PF00460 Flagella basal body rod protein IUJ49_21125 PF18269 T3SS EscN ATPase C-terminal domain IUJ49_21125 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain IUJ49_21135 PF14842 FliG N-terminal domain IUJ49_21135 PF14841 FliG middle domain IUJ49_21135 PF01706 FliG C-terminal domain IUJ49_21140 PF01514 Secretory protein of YscJ/FliF family IUJ49_21140 PF08345 Flagellar M-ring protein C-terminal IUJ49_21145 PF02049 Flagellar hook-basal body complex protein FliE IUJ49_21150 PF02954 Bacterial regulatory protein, Fis family IUJ49_21150 PF00072 Response regulator receiver domain IUJ49_21150 PF00158 Sigma-54 interaction domain IUJ49_21155 PF00771 FHIPEP family IUJ49_21160 PF01312 FlhB HrpN YscU SpaS Family IUJ49_21165 PF01311 Bacterial export proteins, family 1 IUJ49_21170 PF01313 Bacterial export proteins, family 3 IUJ49_21175 PF00813 FliP family IUJ49_21180 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term IUJ49_21195 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases IUJ49_21200 PF04348 LppC putative lipoprotein IUJ49_21205 PF02021 Uncharacterised protein family UPF0102 IUJ49_21210 PF13580 SIS domain IUJ49_21215 PF04972 BON domain IUJ49_21220 PF04386 Stringent starvation protein B IUJ49_21225 PF02798 Glutathione S-transferase, N-terminal domain IUJ49_21225 PF00043 Glutathione S-transferase, C-terminal domain IUJ49_21230 PF02167 Cytochrome C1 family IUJ49_21235 PF00033 Cytochrome b/b6/petB IUJ49_21235 PF00032 Cytochrome b(C-terminal)/b6/petD IUJ49_21240 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal IUJ49_21240 PF00355 Rieske [2Fe-2S] domain IUJ49_21245 PF00380 Ribosomal protein S9/S16 IUJ49_21250 PF00572 Ribosomal protein L13 IUJ49_21255 PF03969 AFG1-like ATPase IUJ49_21265 PF13180 PDZ domain IUJ49_21265 PF00595 PDZ domain IUJ49_21270 PF13180 PDZ domain IUJ49_21300 PF01979 Amidohydrolase family IUJ49_21305 PF03841 L-seryl-tRNA selenium transferase IUJ49_21310 PF07071 KDGP aldolase IUJ49_21315 PF00874 PRD domain IUJ49_21315 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_21315 PF08279 HTH domain IUJ49_21315 PF05043 Mga helix-turn-helix domain IUJ49_21320 PF00381 PTS HPr component phosphorylation site IUJ49_21325 PF03668 P-loop ATPase protein family IUJ49_21330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 IUJ49_21335 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein IUJ49_21340 PF00309 Sigma-54 factor, Activator interacting domain (AID) IUJ49_21340 PF04963 Sigma-54 factor, core binding domain IUJ49_21340 PF04552 Sigma-54, DNA binding domain IUJ49_21345 PF00005 ABC transporter IUJ49_21345 PF12399 Branched-chain amino acid ATP-binding cassette transporter IUJ49_21350 PF03968 OstA-like protein IUJ49_21355 PF06835 Lipopolysaccharide-assembly, LptC-related IUJ49_21365 PF01380 SIS domain IUJ49_21365 PF00571 CBS domain IUJ49_21370 PF00005 ABC transporter IUJ49_21375 PF02405 Permease MlaE IUJ49_21380 PF02470 MlaD protein IUJ49_21385 PF05494 MlaC protein IUJ49_21395 PF01722 BolA-like protein IUJ49_21400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) IUJ49_21405 PF01523 Putative modulator of DNA gyrase IUJ49_21410 PF04751 Protein of unknown function (DUF615) IUJ49_21420 PF04363 Protein of unknown function (DUF496) IUJ49_21450 PF07883 Cupin domain IUJ49_21450 PF01381 Helix-turn-helix IUJ49_21455 PF03594 Benzoate membrane transport protein IUJ49_21465 PF02219 Methylenetetrahydrofolate reductase IUJ49_21480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_21480 PF00672 HAMP domain IUJ49_21485 PF03922 OmpW family IUJ49_21490 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_21495 PF17760 UvrA interaction domain IUJ49_21495 PF17755 UvrA DNA-binding domain IUJ49_21495 PF00005 ABC transporter IUJ49_21500 PF00196 Bacterial regulatory proteins, luxR family IUJ49_21505 PF00436 Single-strand binding protein family IUJ49_21515 PF01545 Cation efflux family IUJ49_21515 PF16916 Dimerisation domain of Zinc Transporter IUJ49_21525 PF00313 'Cold-shock' DNA-binding domain IUJ49_21530 PF07715 TonB-dependent Receptor Plug Domain IUJ49_21530 PF00593 TonB dependent receptor IUJ49_21535 PF01590 GAF domain IUJ49_21535 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_21535 PF00360 Phytochrome region IUJ49_21535 PF00563 EAL domain IUJ49_21540 PF00672 HAMP domain IUJ49_21540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase IUJ49_21540 PF00512 His Kinase A (phospho-acceptor) domain IUJ49_21545 PF00072 Response regulator receiver domain IUJ49_21545 PF00486 Transcriptional regulatory protein, C terminal IUJ49_21565 PF00672 HAMP domain IUJ49_21565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain IUJ49_21575 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_21585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily IUJ49_21600 PF13538 UvrD-like helicase C-terminal domain IUJ49_21605 PF13361 UvrD-like helicase C-terminal domain IUJ49_21605 PF12705 PD-(D/E)XK nuclease superfamily IUJ49_21605 PF00580 UvrD/REP helicase N-terminal domain IUJ49_21610 PF17946 RecC C-terminal domain IUJ49_21615 PF07681 DoxX IUJ49_21620 PF02678 Pirin IUJ49_21620 PF17954 Quercetinase C-terminal cupin domain IUJ49_21630 PF03466 LysR substrate binding domain IUJ49_21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_21640 PF07702 UTRA domain IUJ49_21640 PF00392 Bacterial regulatory proteins, gntR family IUJ49_21655 PF00528 Binding-protein-dependent transport system inner membrane component IUJ49_21665 PF12857 TOBE-like domain IUJ49_21665 PF00005 ABC transporter IUJ49_21675 PF00990 Diguanylate cyclase, GGDEF domain IUJ49_21695 PF00583 Acetyltransferase (GNAT) family IUJ49_21700 PF00199 Catalase IUJ49_21700 PF06628 Catalase-related immune-responsive IUJ49_21725 PF00293 NUDIX domain IUJ49_21730 PF01594 AI-2E family transporter IUJ49_21735 PF00106 short chain dehydrogenase IUJ49_21740 PF04371 Porphyromonas-type peptidyl-arginine deiminase IUJ49_21745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family IUJ49_21745 PF03466 LysR substrate binding domain IUJ49_21750 PF00158 Sigma-54 interaction domain IUJ49_21750 PF02954 Bacterial regulatory protein, Fis family IUJ49_21750 PF00989 PAS fold IUJ49_21755 PF00465 Iron-containing alcohol dehydrogenase IUJ49_21760 PF00381 PTS HPr component phosphorylation site IUJ49_21760 PF05524 PEP-utilising enzyme, N-terminal IUJ49_21760 PF03610 PTS system fructose IIA component IUJ49_21760 PF00391 PEP-utilising enzyme, mobile domain IUJ49_21765 PF02734 DAK2 domain IUJ49_21770 PF02733 Dak1 domain IUJ49_21775 PF00860 Permease family IUJ49_21820 PF00009 Elongation factor Tu GTP binding domain IUJ49_21820 PF03144 Elongation factor Tu domain 2 IUJ49_21820 PF03143 Elongation factor Tu C-terminal domain IUJ49_21825 PF03764 Elongation factor G, domain IV IUJ49_21825 PF14492 Elongation Factor G, domain II IUJ49_21825 PF00679 Elongation factor G C-terminus IUJ49_21825 PF00009 Elongation factor Tu GTP binding domain IUJ49_21825 PF03144 Elongation factor Tu domain 2 IUJ49_21830 PF00177 Ribosomal protein S7p/S5e IUJ49_21835 PF00164 Ribosomal protein S12/S23 IUJ49_21840 PF04077 DsrH like protein IUJ49_21845 PF02635 DsrE/DsrF-like family IUJ49_21850 PF02635 DsrE/DsrF-like family IUJ49_21855 PF01042 Endoribonuclease L-PSP IUJ49_21860 PF13309 HTH domain IUJ49_21860 PF08348 YheO-like PAS domain IUJ49_21865 PF04997 RNA polymerase Rpb1, domain 1 IUJ49_21865 PF00623 RNA polymerase Rpb1, domain 2 IUJ49_21865 PF04983 RNA polymerase Rpb1, domain 3 IUJ49_21865 PF05000 RNA polymerase Rpb1, domain 4 IUJ49_21865 PF04998 RNA polymerase Rpb1, domain 5 IUJ49_21870 PF10385 RNA polymerase beta subunit external 1 domain IUJ49_21870 PF04560 RNA polymerase Rpb2, domain 7 IUJ49_21870 PF00562 RNA polymerase Rpb2, domain 6 IUJ49_21870 PF04565 RNA polymerase Rpb2, domain 3 IUJ49_21870 PF04561 RNA polymerase Rpb2, domain 2 IUJ49_21870 PF04563 RNA polymerase beta subunit IUJ49_21875 PF00542 Ribosomal protein L7/L12 C-terminal domain IUJ49_21875 PF16320 Ribosomal protein L7/L12 dimerisation domain IUJ49_21880 PF00466 Ribosomal protein L10 IUJ49_21885 PF00687 Ribosomal protein L1p/L10e family IUJ49_21890 PF00298 Ribosomal protein L11, RNA binding domain IUJ49_21890 PF03946 Ribosomal protein L11, N-terminal domain IUJ49_21895 PF00467 KOW motif IUJ49_21895 PF02357 Transcription termination factor nusG IUJ49_21900 PF00584 SecE/Sec61-gamma subunits of protein translocation complex IUJ49_21910 PF03143 Elongation factor Tu C-terminal domain IUJ49_21910 PF03144 Elongation factor Tu domain 2 IUJ49_21910 PF00009 Elongation factor Tu GTP binding domain IUJ49_21925 PF00485 Phosphoribulokinase / Uridine kinase family