locus-tag class description RIMD111065_00010 PF08299 Bacterial dnaA protein helix-turn-helix RIMD111065_00010 PF00308 Bacterial dnaA protein RIMD111065_00010 PF11638 DnaA N-terminal domain RIMD111065_00020 PF00712 DNA polymerase III beta subunit, N-terminal domain RIMD111065_00020 PF02767 DNA polymerase III beta subunit, central domain RIMD111065_00020 PF02768 DNA polymerase III beta subunit, C-terminal domain RIMD111065_00030 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_00040 PF18053 DNA gyrase B subunit insert domain RIMD111065_00040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00040 PF01751 Toprim domain RIMD111065_00040 PF00204 DNA gyrase B RIMD111065_00040 PF00986 DNA gyrase B subunit, carboxyl terminus RIMD111065_00130 PF08279 HTH domain RIMD111065_00130 PF13280 WYL domain RIMD111065_00140 PF00011 Hsp20/alpha crystallin family RIMD111065_00150 PF00011 Hsp20/alpha crystallin family RIMD111065_00160 PF00155 Aminotransferase class I and II RIMD111065_00190 PF07690 Major Facilitator Superfamily RIMD111065_00200 PF00072 Response regulator receiver domain RIMD111065_00200 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_00210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00210 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_00210 PF02702 Osmosensitive K+ channel His kinase sensor domain RIMD111065_00210 PF13492 GAF domain RIMD111065_00210 PF13493 Domain of unknown function (DUF4118) RIMD111065_00220 PF02669 K+-transporting ATPase, c chain RIMD111065_00240 PF03814 Potassium-transporting ATPase A subunit RIMD111065_00250 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_00250 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_00260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00260 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_00260 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_00270 PF00873 AcrB/AcrD/AcrF family RIMD111065_00280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_00290 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_00310 PF00224 Pyruvate kinase, barrel domain RIMD111065_00310 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_00320 PF07690 Major Facilitator Superfamily RIMD111065_00350 PF00672 HAMP domain RIMD111065_00350 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00360 PF02954 Bacterial regulatory protein, Fis family RIMD111065_00360 PF00072 Response regulator receiver domain RIMD111065_00360 PF14532 Sigma-54 interaction domain RIMD111065_00390 PF12146 Serine aminopeptidase, S33 RIMD111065_00400 PF00588 SpoU rRNA Methylase family RIMD111065_00400 PF12105 SpoU, rRNA methylase, C-terminal RIMD111065_00410 PF02824 TGS domain RIMD111065_00410 PF13291 ACT domain RIMD111065_00410 PF04607 Region found in RelA / SpoT proteins RIMD111065_00420 PF01192 RNA polymerase Rpb6 RIMD111065_00430 PF00625 Guanylate kinase RIMD111065_00440 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_00470 PF00892 EamA-like transporter family RIMD111065_00510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_00510 PF03466 LysR substrate binding domain RIMD111065_00520 PF00579 tRNA synthetases class I (W and Y) RIMD111065_00530 PF00582 Universal stress protein family RIMD111065_00540 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RIMD111065_00540 PF12241 Trans-2-enoyl-CoA reductase catalytic region RIMD111065_00540 PF07055 Enoyl reductase FAD binding domain RIMD111065_00550 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_00560 PF00210 Ferritin-like domain RIMD111065_00580 PF07690 Major Facilitator Superfamily RIMD111065_00590 PF01810 LysE type translocator RIMD111065_00620 PF15976 CS1-pili formation C-terminal RIMD111065_00620 PF16967 E-set like domain RIMD111065_00630 PF18649 EcpB C-terminal domain RIMD111065_00640 PF16449 Fimbrillin MatB RIMD111065_00650 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_00650 PF00072 Response regulator receiver domain RIMD111065_00660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00660 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_00660 PF01627 Hpt domain RIMD111065_00660 PF00989 PAS fold RIMD111065_00660 PF00072 Response regulator receiver domain RIMD111065_00660 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_00680 PF06580 Histidine kinase RIMD111065_00680 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_00680 PF07694 5TMR of 5TMR-LYT RIMD111065_00690 PF00072 Response regulator receiver domain RIMD111065_00690 PF04397 LytTr DNA-binding domain RIMD111065_00700 PF07690 Major Facilitator Superfamily RIMD111065_00710 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain RIMD111065_00710 PF02222 ATP-grasp domain RIMD111065_00720 PF00731 AIR carboxylase RIMD111065_00760 PF03466 LysR substrate binding domain RIMD111065_00760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_00770 PF00593 TonB dependent receptor RIMD111065_00770 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_00780 PF01177 Asp/Glu/Hydantoin racemase RIMD111065_00800 PF00899 ThiF family RIMD111065_00810 PF02657 Fe-S metabolism associated domain RIMD111065_00820 PF00266 Aminotransferase class-V RIMD111065_00830 PF13361 UvrD-like helicase C-terminal domain RIMD111065_00830 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_00840 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_00840 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_00840 PF00563 EAL domain RIMD111065_00850 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_00860 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_00860 PF00107 Zinc-binding dehydrogenase RIMD111065_00870 PF00155 Aminotransferase class I and II RIMD111065_00880 PF08360 QacR-like protein, C-terminal region RIMD111065_00880 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_00890 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_00920 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) RIMD111065_00960 PF03755 YicC-like family, N-terminal region RIMD111065_00960 PF08340 Domain of unknown function (DUF1732) RIMD111065_00970 PF03725 3' exoribonuclease family, domain 2 RIMD111065_00970 PF01138 3' exoribonuclease family, domain 1 RIMD111065_00980 PF00156 Phosphoribosyl transferase domain RIMD111065_00990 PF00403 Heavy-metal-associated domain RIMD111065_01000 PF00376 MerR family regulatory protein RIMD111065_01000 PF09278 MerR, DNA binding RIMD111065_01010 PF01590 GAF domain RIMD111065_01010 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_01010 PF00360 Phytochrome region RIMD111065_01010 PF00563 EAL domain RIMD111065_01020 PF06288 Protein of unknown function (DUF1040) RIMD111065_01030 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase RIMD111065_01030 PF13746 4Fe-4S dicluster domain RIMD111065_01030 PF12801 4Fe-4S binding domain RIMD111065_01040 PF01636 Phosphotransferase enzyme family RIMD111065_01050 PF01323 DSBA-like thioredoxin domain RIMD111065_01060 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_01070 PF00005 ABC transporter RIMD111065_01090 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family RIMD111065_01090 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain RIMD111065_01100 PF00857 Isochorismatase family RIMD111065_01120 PF04463 Protein of unknown function (DUF523) RIMD111065_01130 PF01553 Acyltransferase RIMD111065_01140 PF01553 Acyltransferase RIMD111065_01150 PF01078 Magnesium chelatase, subunit ChlI RIMD111065_01150 PF13335 Magnesium chelatase, subunit ChlI C-terminal RIMD111065_01160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_01160 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_01160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_01180 PF01063 Amino-transferase class IV RIMD111065_01190 PF00920 Dehydratase family RIMD111065_01200 PF00585 C-terminal regulatory domain of Threonine dehydratase RIMD111065_01200 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_01210 PF00691 OmpA family RIMD111065_01210 PF01389 OmpA-like transmembrane domain RIMD111065_01230 PF00270 DEAD/DEAH box helicase RIMD111065_01230 PF00271 Helicase conserved C-terminal domain RIMD111065_01230 PF17764 3′ DNA-binding domain (3′BD) RIMD111065_01230 PF18074 Primosomal protein N C-terminal domain RIMD111065_01230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain RIMD111065_01240 PF01197 Ribosomal protein L31 RIMD111065_01250 PF13460 NAD(P)H-binding RIMD111065_01250 PF11066 Protein of unknown function (DUF2867) RIMD111065_01260 PF03949 Malic enzyme, NAD binding domain RIMD111065_01260 PF00390 Malic enzyme, N-terminal domain RIMD111065_01280 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_01280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_01280 PF00672 HAMP domain RIMD111065_01290 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_01290 PF00072 Response regulator receiver domain RIMD111065_01300 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_01330 PF00128 Alpha amylase, catalytic domain RIMD111065_01330 PF02903 Alpha amylase, N-terminal ig-like domain RIMD111065_01360 PF00012 Hsp70 protein RIMD111065_01370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_01370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_01380 PF05981 CreA protein RIMD111065_01410 PF01258 Prokaryotic dksA/traR C4-type zinc finger RIMD111065_01420 PF00120 Glutamine synthetase, catalytic domain RIMD111065_01430 PF00202 Aminotransferase class-III RIMD111065_01440 PF13416 Bacterial extracellular solute-binding protein RIMD111065_01450 PF13416 Bacterial extracellular solute-binding protein RIMD111065_01460 PF00005 ABC transporter RIMD111065_01460 PF08402 TOBE domain RIMD111065_01470 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_01480 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_01490 PF03475 3-alpha domain RIMD111065_01490 PF03473 MOSC domain RIMD111065_01510 PF03061 Thioesterase superfamily RIMD111065_01520 PF16124 RecQ zinc-binding RIMD111065_01520 PF00270 DEAD/DEAH box helicase RIMD111065_01520 PF09382 RQC domain RIMD111065_01520 PF00570 HRDC domain RIMD111065_01520 PF00271 Helicase conserved C-terminal domain RIMD111065_01530 PF00034 Cytochrome c RIMD111065_01540 PF02696 Uncharacterized ACR, YdiU/UPF0061 family RIMD111065_01560 PF02592 Putative vitamin uptake transporter RIMD111065_01570 PF03737 Aldolase/RraA RIMD111065_01580 PF00672 HAMP domain RIMD111065_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_01590 PF01769 Divalent cation transporter RIMD111065_01590 PF00571 CBS domain RIMD111065_01590 PF03448 MgtE intracellular N domain RIMD111065_01600 PF10414 Sirohaem synthase dimerisation region RIMD111065_01600 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_01600 PF14824 Sirohaem biosynthesis protein central RIMD111065_01610 PF01226 Formate/nitrite transporter RIMD111065_01620 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_01630 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_01630 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_01630 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_01630 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_01630 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_01650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_01650 PF03466 LysR substrate binding domain RIMD111065_01660 PF07690 Major Facilitator Superfamily RIMD111065_01670 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_01670 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_01670 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_01680 PF00227 Proteasome subunit RIMD111065_01700 PF03485 Arginyl tRNA synthetase N terminal domain RIMD111065_01700 PF05746 DALR anticodon binding domain RIMD111065_01700 PF00750 tRNA synthetases class I (R) RIMD111065_01720 PF04545 Sigma-70, region 4 RIMD111065_01720 PF04542 Sigma-70 region 2 RIMD111065_01730 PF12973 ChrR Cupin-like domain RIMD111065_01740 PF02673 Bacitracin resistance protein BacA RIMD111065_01750 PF00248 Aldo/keto reductase family RIMD111065_01760 PF01263 Aldose 1-epimerase RIMD111065_01770 PF10509 Galactokinase galactose-binding signature RIMD111065_01770 PF00288 GHMP kinases N terminal domain RIMD111065_01770 PF08544 GHMP kinases C terminal RIMD111065_01780 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain RIMD111065_01780 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain RIMD111065_01790 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_01800 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_01810 PF16353 Domain of unknown function(DUF4981) RIMD111065_01810 PF02837 Glycosyl hydrolases family 2, sugar binding domain RIMD111065_01810 PF02929 Beta galactosidase small chain RIMD111065_01810 PF00703 Glycosyl hydrolases family 2 RIMD111065_01810 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RIMD111065_01820 PF13407 Periplasmic binding protein domain RIMD111065_01830 PF00005 ABC transporter RIMD111065_01840 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_01850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_01850 PF00672 HAMP domain RIMD111065_01850 PF02743 Cache domain RIMD111065_01900 PF00696 Amino acid kinase family RIMD111065_01910 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_01910 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_01920 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_01930 PF01316 Arginine repressor, DNA binding domain RIMD111065_01930 PF02863 Arginine repressor, C-terminal domain RIMD111065_01940 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain RIMD111065_01940 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain RIMD111065_01950 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_01950 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_01970 PF02666 Phosphatidylserine decarboxylase RIMD111065_01980 PF02743 Cache domain RIMD111065_01980 PF00672 HAMP domain RIMD111065_01980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_01990 PF08212 Lipocalin-like domain RIMD111065_02000 PF06719 AraC-type transcriptional regulator N-terminus RIMD111065_02000 PF12833 Helix-turn-helix domain RIMD111065_02010 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_02020 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_02020 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_02020 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch RIMD111065_02030 PF02233 NAD(P) transhydrogenase beta subunit RIMD111065_02050 PF03313 Serine dehydratase alpha chain RIMD111065_02060 PF00375 Sodium:dicarboxylate symporter family RIMD111065_02070 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_02070 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_02080 PF13525 Outer membrane lipoprotein RIMD111065_02090 PF00849 RNA pseudouridylate synthase RIMD111065_02090 PF01479 S4 domain RIMD111065_02100 PF02578 Multi-copper polyphenol oxidoreductase laccase RIMD111065_02110 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_02110 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_02110 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_02110 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_02110 PF17871 AAA lid domain RIMD111065_02130 PF03590 Aspartate-ammonia ligase RIMD111065_02140 PF01037 Lrp/AsnC ligand binding domain RIMD111065_02160 PF10063 Uncharacterized integral membrane protein (DUF2301) RIMD111065_02170 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_02170 PF00571 CBS domain RIMD111065_02200 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_02200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_02220 PF00072 Response regulator receiver domain RIMD111065_02220 PF00158 Sigma-54 interaction domain RIMD111065_02230 PF06496 Protein of unknown function (DUF1097) RIMD111065_02240 PF00174 Oxidoreductase molybdopterin binding domain RIMD111065_02250 PF01794 Ferric reductase like transmembrane component RIMD111065_02280 PF00072 Response regulator receiver domain RIMD111065_02280 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_02310 PF00384 Molybdopterin oxidoreductase RIMD111065_02310 PF01568 Molydopterin dinucleotide binding domain RIMD111065_02310 PF18364 Molybdopterin oxidoreductase N-terminal domain RIMD111065_02320 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_02330 PF01131 DNA topoisomerase RIMD111065_02330 PF01751 Toprim domain RIMD111065_02370 PF12852 Cupin RIMD111065_02370 PF12833 Helix-turn-helix domain RIMD111065_02380 PF02386 Cation transport protein RIMD111065_02390 PF02080 TrkA-C domain RIMD111065_02390 PF02254 TrkA-N domain RIMD111065_02400 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain RIMD111065_02400 PF01565 FAD binding domain RIMD111065_02410 PF08279 HTH domain RIMD111065_02410 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_02410 PF02237 Biotin protein ligase C terminal domain RIMD111065_02420 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_02430 PF03144 Elongation factor Tu domain 2 RIMD111065_02430 PF00009 Elongation factor Tu GTP binding domain RIMD111065_02430 PF03143 Elongation factor Tu C-terminal domain RIMD111065_02440 PF00584 SecE/Sec61-gamma subunits of protein translocation complex RIMD111065_02450 PF00467 KOW motif RIMD111065_02450 PF02357 Transcription termination factor nusG RIMD111065_02460 PF03946 Ribosomal protein L11, N-terminal domain RIMD111065_02460 PF00298 Ribosomal protein L11, RNA binding domain RIMD111065_02470 PF00687 Ribosomal protein L1p/L10e family RIMD111065_02480 PF00466 Ribosomal protein L10 RIMD111065_02490 PF16320 Ribosomal protein L7/L12 dimerisation domain RIMD111065_02490 PF00542 Ribosomal protein L7/L12 C-terminal domain RIMD111065_02500 PF04563 RNA polymerase beta subunit RIMD111065_02500 PF04561 RNA polymerase Rpb2, domain 2 RIMD111065_02500 PF04565 RNA polymerase Rpb2, domain 3 RIMD111065_02500 PF10385 RNA polymerase beta subunit external 1 domain RIMD111065_02500 PF04560 RNA polymerase Rpb2, domain 7 RIMD111065_02500 PF00562 RNA polymerase Rpb2, domain 6 RIMD111065_02510 PF04997 RNA polymerase Rpb1, domain 1 RIMD111065_02510 PF00623 RNA polymerase Rpb1, domain 2 RIMD111065_02510 PF04983 RNA polymerase Rpb1, domain 3 RIMD111065_02510 PF05000 RNA polymerase Rpb1, domain 4 RIMD111065_02510 PF04998 RNA polymerase Rpb1, domain 5 RIMD111065_02520 PF08348 YheO-like PAS domain RIMD111065_02520 PF13309 HTH domain RIMD111065_02530 PF01042 Endoribonuclease L-PSP RIMD111065_02540 PF02635 DsrE/DsrF-like family RIMD111065_02550 PF02635 DsrE/DsrF-like family RIMD111065_02560 PF04077 DsrH like protein RIMD111065_02570 PF00164 Ribosomal protein S12/S23 RIMD111065_02580 PF00177 Ribosomal protein S7p/S5e RIMD111065_02590 PF00679 Elongation factor G C-terminus RIMD111065_02590 PF03144 Elongation factor Tu domain 2 RIMD111065_02590 PF00009 Elongation factor Tu GTP binding domain RIMD111065_02590 PF03764 Elongation factor G, domain IV RIMD111065_02590 PF14492 Elongation Factor G, domain II RIMD111065_02600 PF03143 Elongation factor Tu C-terminal domain RIMD111065_02600 PF03144 Elongation factor Tu domain 2 RIMD111065_02600 PF00009 Elongation factor Tu GTP binding domain RIMD111065_02630 PF00860 Permease family RIMD111065_02640 PF02733 Dak1 domain RIMD111065_02650 PF02734 DAK2 domain RIMD111065_02660 PF00381 PTS HPr component phosphorylation site RIMD111065_02660 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_02660 PF03610 PTS system fructose IIA component RIMD111065_02660 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_02670 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_02680 PF00989 PAS fold RIMD111065_02680 PF00158 Sigma-54 interaction domain RIMD111065_02680 PF02954 Bacterial regulatory protein, Fis family RIMD111065_02690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_02690 PF03466 LysR substrate binding domain RIMD111065_02700 PF04371 Porphyromonas-type peptidyl-arginine deiminase RIMD111065_02720 PF01594 AI-2E family transporter RIMD111065_02730 PF00293 NUDIX domain RIMD111065_02790 PF00199 Catalase RIMD111065_02790 PF06628 Catalase-related immune-responsive RIMD111065_02800 PF00583 Acetyltransferase (GNAT) family RIMD111065_02840 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_02860 PF08402 TOBE domain RIMD111065_02860 PF00005 ABC transporter RIMD111065_02880 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_02910 PF07702 UTRA domain RIMD111065_02910 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_02930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_02930 PF03466 LysR substrate binding domain RIMD111065_02950 PF02678 Pirin RIMD111065_02950 PF17954 Quercetinase C-terminal cupin domain RIMD111065_02960 PF07681 DoxX RIMD111065_02970 PF17946 RecC C-terminal domain RIMD111065_02980 PF12705 PD-(D/E)XK nuclease superfamily RIMD111065_02980 PF13361 UvrD-like helicase C-terminal domain RIMD111065_02980 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_02990 PF13538 UvrD-like helicase C-terminal domain RIMD111065_03010 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_03030 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_03090 PF00072 Response regulator receiver domain RIMD111065_03090 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_03100 PF00672 HAMP domain RIMD111065_03100 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_03100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_03120 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_03130 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_03130 PF00593 TonB dependent receptor RIMD111065_03140 PF00313 'Cold-shock' DNA-binding domain RIMD111065_03160 PF16916 Dimerisation domain of Zinc Transporter RIMD111065_03160 PF01545 Cation efflux family RIMD111065_03190 PF00436 Single-strand binding protein family RIMD111065_03200 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_03210 PF00005 ABC transporter RIMD111065_03210 PF17755 UvrA DNA-binding domain RIMD111065_03210 PF17760 UvrA interaction domain RIMD111065_03220 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_03230 PF03922 OmpW family RIMD111065_03240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_03240 PF00672 HAMP domain RIMD111065_03270 PF02219 Methylenetetrahydrofolate reductase RIMD111065_03290 PF03594 Benzoate membrane transport protein RIMD111065_03300 PF07883 Cupin domain RIMD111065_03300 PF01381 Helix-turn-helix RIMD111065_03320 PF04363 Protein of unknown function (DUF496) RIMD111065_03340 PF04751 Protein of unknown function (DUF615) RIMD111065_03350 PF01523 Putative modulator of DNA gyrase RIMD111065_03360 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RIMD111065_03370 PF01722 BolA-like protein RIMD111065_03390 PF05494 MlaC protein RIMD111065_03400 PF02470 MlaD protein RIMD111065_03410 PF02405 Permease MlaE RIMD111065_03420 PF00005 ABC transporter RIMD111065_03430 PF00571 CBS domain RIMD111065_03430 PF01380 SIS domain RIMD111065_03450 PF06835 Lipopolysaccharide-assembly, LptC-related RIMD111065_03460 PF03968 OstA-like protein RIMD111065_03470 PF00005 ABC transporter RIMD111065_03470 PF12399 Branched-chain amino acid ATP-binding cassette transporter RIMD111065_03480 PF04963 Sigma-54 factor, core binding domain RIMD111065_03480 PF04552 Sigma-54, DNA binding domain RIMD111065_03480 PF00309 Sigma-54 factor, Activator interacting domain (AID) RIMD111065_03490 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RIMD111065_03500 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_03510 PF03668 P-loop ATPase protein family RIMD111065_03520 PF00381 PTS HPr component phosphorylation site RIMD111065_03530 PF05043 Mga helix-turn-helix domain RIMD111065_03530 PF08279 HTH domain RIMD111065_03530 PF00874 PRD domain RIMD111065_03530 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_03540 PF07071 KDGP aldolase RIMD111065_03550 PF03841 L-seryl-tRNA selenium transferase RIMD111065_03560 PF01979 Amidohydrolase family RIMD111065_03620 PF13180 PDZ domain RIMD111065_03630 PF00595 PDZ domain RIMD111065_03630 PF13180 PDZ domain RIMD111065_03650 PF03969 AFG1-like ATPase RIMD111065_03660 PF00572 Ribosomal protein L13 RIMD111065_03670 PF00380 Ribosomal protein S9/S16 RIMD111065_03680 PF00355 Rieske [2Fe-2S] domain RIMD111065_03680 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal RIMD111065_03690 PF00032 Cytochrome b(C-terminal)/b6/petD RIMD111065_03690 PF00033 Cytochrome b/b6/petB RIMD111065_03700 PF02167 Cytochrome C1 family RIMD111065_03710 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_03710 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_03720 PF04386 Stringent starvation protein B RIMD111065_03730 PF04972 BON domain RIMD111065_03740 PF13580 SIS domain RIMD111065_03750 PF02021 Uncharacterised protein family UPF0102 RIMD111065_03760 PF04348 LppC putative lipoprotein RIMD111065_03770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_03780 PF02381 MraZ protein, putative antitoxin-like RIMD111065_03790 PF01795 MraW methylase family RIMD111065_03800 PF04999 Cell division protein FtsL RIMD111065_03810 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_03810 PF03717 Penicillin-binding Protein dimerisation domain RIMD111065_03820 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_03820 PF01225 Mur ligase family, catalytic domain RIMD111065_03820 PF08245 Mur ligase middle domain RIMD111065_03830 PF08245 Mur ligase middle domain RIMD111065_03830 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_03830 PF01225 Mur ligase family, catalytic domain RIMD111065_03840 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 RIMD111065_03840 PF00953 Glycosyl transferase family 4 RIMD111065_03850 PF08245 Mur ligase middle domain RIMD111065_03850 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_03860 PF01098 Cell cycle protein RIMD111065_03870 PF04101 Glycosyltransferase family 28 C-terminal domain RIMD111065_03870 PF03033 Glycosyltransferase family 28 N-terminal domain RIMD111065_03880 PF08245 Mur ligase middle domain RIMD111065_03880 PF01225 Mur ligase family, catalytic domain RIMD111065_03880 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_03890 PF03799 Cell division protein FtsQ RIMD111065_03890 PF08478 POTRA domain, FtsQ-type RIMD111065_03900 PF02491 SHS2 domain inserted in FTSA RIMD111065_03910 PF00091 Tubulin/FtsZ family, GTPase domain RIMD111065_03910 PF12327 FtsZ family, C-terminal domain RIMD111065_03920 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase RIMD111065_03940 PF07517 SecA DEAD-like domain RIMD111065_03940 PF01043 SecA preprotein cross-linking domain RIMD111065_03940 PF07516 SecA Wing and Scaffold domain RIMD111065_03940 PF02810 SEC-C motif RIMD111065_03960 PF00293 NUDIX domain RIMD111065_03970 PF03884 DNA gyrase inhibitor YacG RIMD111065_03980 PF07072 Cell division protein RIMD111065_03990 PF01121 Dephospho-CoA kinase RIMD111065_04000 PF01478 Type IV leader peptidase family RIMD111065_04000 PF06750 Bacterial Peptidase A24 N-terminal domain RIMD111065_04010 PF00482 Type II secretion system (T2SS), protein F RIMD111065_04020 PF00437 Type II/IV secretion system protein RIMD111065_04020 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RIMD111065_04040 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain RIMD111065_04040 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain RIMD111065_04060 PF01510 N-acetylmuramoyl-L-alanine amidase RIMD111065_04070 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_04070 PF07729 FCD domain RIMD111065_04080 PF17831 Pyruvate dehydrogenase E1 component middle domain RIMD111065_04080 PF00456 Transketolase, thiamine diphosphate binding domain RIMD111065_04090 PF02817 e3 binding domain RIMD111065_04090 PF00364 Biotin-requiring enzyme RIMD111065_04090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_04100 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_04100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_04120 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_04120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_04120 PF00672 HAMP domain RIMD111065_04130 PF00672 HAMP domain RIMD111065_04130 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_04130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_04140 PF01734 Patatin-like phospholipase RIMD111065_04150 PF11791 Aconitate B N-terminal domain RIMD111065_04150 PF00330 Aconitase family (aconitate hydratase) RIMD111065_04150 PF06434 Aconitate hydratase 2 N-terminus RIMD111065_04160 PF12792 CSS motif domain associated with EAL RIMD111065_04160 PF00563 EAL domain RIMD111065_04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_04170 PF03466 LysR substrate binding domain RIMD111065_04180 PF01810 LysE type translocator RIMD111065_04190 PF04030 D-arabinono-1,4-lactone oxidase RIMD111065_04190 PF01565 FAD binding domain RIMD111065_04200 PF02492 CobW/HypB/UreG, nucleotide-binding domain RIMD111065_04200 PF07683 Cobalamin synthesis protein cobW C-terminal domain RIMD111065_04210 PF07690 Major Facilitator Superfamily RIMD111065_04230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RIMD111065_04240 PF02152 Dihydroneopterin aldolase RIMD111065_04250 PF02660 Glycerol-3-phosphate acyltransferase RIMD111065_04290 PF07670 Nucleoside recognition RIMD111065_04300 PF01584 CheW-like domain RIMD111065_04300 PF00072 Response regulator receiver domain RIMD111065_04310 PF00106 short chain dehydrogenase RIMD111065_04320 PF17176 tRNA-binding domain RIMD111065_04320 PF05127 Helicase RIMD111065_04320 PF08351 Domain of unknown function (DUF1726) RIMD111065_04320 PF13718 GNAT acetyltransferase 2 RIMD111065_04350 PF00210 Ferritin-like domain RIMD111065_04370 PF02142 MGS-like domain RIMD111065_04400 PF17763 Glutaminase/Asparaginase C-terminal domain RIMD111065_04400 PF00710 Asparaginase, N-terminal RIMD111065_04430 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_04440 PF02378 Phosphotransferase system, EIIC RIMD111065_04440 PF00367 phosphotransferase system, EIIB RIMD111065_04450 PF11941 Domain of unknown function (DUF3459) RIMD111065_04450 PF00128 Alpha amylase, catalytic domain RIMD111065_04460 PF12464 Maltose acetyltransferase RIMD111065_04460 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_04470 PF01037 Lrp/AsnC ligand binding domain RIMD111065_04480 PF00892 EamA-like transporter family RIMD111065_04500 PF00171 Aldehyde dehydrogenase family RIMD111065_04510 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_04520 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_04530 PF00005 ABC transporter RIMD111065_04530 PF08402 TOBE domain RIMD111065_04540 PF13416 Bacterial extracellular solute-binding protein RIMD111065_04550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_04550 PF03466 LysR substrate binding domain RIMD111065_04560 PF03553 Na+/H+ antiporter family RIMD111065_04590 PF00534 Glycosyl transferases group 1 RIMD111065_04590 PF08323 Starch synthase catalytic domain RIMD111065_04600 PF00483 Nucleotidyl transferase RIMD111065_04610 PF05175 Methyltransferase small domain RIMD111065_04610 PF08468 Methyltransferase small domain N-terminal RIMD111065_04620 PF00701 Dihydrodipicolinate synthetase family RIMD111065_04630 PF01590 GAF domain RIMD111065_04630 PF00360 Phytochrome region RIMD111065_04630 PF00563 EAL domain RIMD111065_04630 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_04650 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_04660 PF17209 Hfq protein RIMD111065_04670 PF04403 Paraquat-inducible protein A RIMD111065_04680 PF02470 MlaD protein RIMD111065_04690 PF03886 ABC-type transport auxiliary lipoprotein component RIMD111065_04700 PF01389 OmpA-like transmembrane domain RIMD111065_04700 PF00691 OmpA family RIMD111065_04720 PF00657 GDSL-like Lipase/Acylhydrolase RIMD111065_04730 PF04076 Bacterial OB fold (BOF) protein RIMD111065_04740 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain RIMD111065_04740 PF01464 Transglycosylase SLT domain RIMD111065_04750 PF04362 Bacterial Fe(2+) trafficking RIMD111065_04760 PF14815 NUDIX domain RIMD111065_04760 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_04760 PF10576 Iron-sulfur binding domain of endonuclease III RIMD111065_04760 PF00633 Helix-hairpin-helix motif RIMD111065_04770 PF16537 Type II secretion system protein B RIMD111065_04780 PF01471 Putative peptidoglycan binding domain RIMD111065_04780 PF13401 AAA domain RIMD111065_04790 PF01966 HD domain RIMD111065_04790 PF01743 Poly A polymerase head domain RIMD111065_04790 PF12627 Probable RNA and SrmB- binding site of polymerase A RIMD111065_04820 PF04172 LrgB-like family RIMD111065_04830 PF03788 LrgA family RIMD111065_04840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_04840 PF03466 LysR substrate binding domain RIMD111065_04850 PF00155 Aminotransferase class I and II RIMD111065_04850 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_04890 PF07350 Protein of unknown function (DUF1479) RIMD111065_04900 PF04073 Aminoacyl-tRNA editing domain RIMD111065_04910 PF01384 Phosphate transporter family RIMD111065_04920 PF01865 Protein of unknown function DUF47 RIMD111065_04940 PF01928 CYTH domain RIMD111065_04960 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_04970 PF00294 pfkB family carbohydrate kinase RIMD111065_04970 PF01467 Cytidylyltransferase-like RIMD111065_04980 PF02321 Outer membrane efflux protein RIMD111065_04990 PF00293 NUDIX domain RIMD111065_05000 PF06853 Protein of unknown function (DUF1249) RIMD111065_05010 PF00149 Calcineurin-like phosphoesterase RIMD111065_05020 PF05728 Uncharacterised protein family (UPF0227) RIMD111065_05030 PF00293 NUDIX domain RIMD111065_05050 PF07869 Protein of unknown function (DUF1656) RIMD111065_05060 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_05060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_05070 PF04632 Fusaric acid resistance protein family RIMD111065_05080 PF01751 Toprim domain RIMD111065_05080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_05080 PF00986 DNA gyrase B subunit, carboxyl terminus RIMD111065_05080 PF00204 DNA gyrase B RIMD111065_05090 PF03989 DNA gyrase C-terminal domain, beta-propeller RIMD111065_05090 PF00521 DNA gyrase/topoisomerase IV, subunit A RIMD111065_05110 PF03466 LysR substrate binding domain RIMD111065_05110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_05190 PF00684 DnaJ central domain RIMD111065_05190 PF01556 DnaJ C terminal domain RIMD111065_05190 PF00226 DnaJ domain RIMD111065_05200 PF00578 AhpC/TSA family RIMD111065_05240 PF01553 Acyltransferase RIMD111065_05250 PF04012 PspA/IM30 family RIMD111065_05280 PF01541 GIY-YIG catalytic domain RIMD111065_05300 PF00892 EamA-like transporter family RIMD111065_05310 PF03167 Uracil DNA glycosylase superfamily RIMD111065_05320 PF00892 EamA-like transporter family RIMD111065_05330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_05330 PF03466 LysR substrate binding domain RIMD111065_05340 PF00950 ABC 3 transport family RIMD111065_05350 PF00005 ABC transporter RIMD111065_05360 PF01297 Zinc-uptake complex component A periplasmic RIMD111065_05400 PF01476 LysM domain RIMD111065_05400 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_05400 PF01551 Peptidase family M23 RIMD111065_05410 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_05420 PF04222 Protein of unknown function (DUF416) RIMD111065_05450 PF02028 BCCT, betaine/carnitine/choline family transporter RIMD111065_05460 PF05190 MutS family domain IV RIMD111065_05460 PF05192 MutS domain III RIMD111065_05460 PF00488 MutS domain V RIMD111065_05460 PF01624 MutS domain I RIMD111065_05460 PF05188 MutS domain II RIMD111065_05470 PF02464 Competence-damaged protein RIMD111065_05480 PF00154 recA bacterial DNA recombination protein RIMD111065_05490 PF02631 RecX family RIMD111065_05500 PF02272 DHHA1 domain RIMD111065_05500 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RIMD111065_05500 PF01411 tRNA synthetases class II (A) RIMD111065_05510 PF00696 Amino acid kinase family RIMD111065_05510 PF01842 ACT domain RIMD111065_05510 PF13840 ACT domain RIMD111065_05520 PF02599 Global regulator protein family RIMD111065_05530 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_05540 PF09335 SNARE associated Golgi protein RIMD111065_05550 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_05550 PF03471 Transporter associated domain RIMD111065_05550 PF00571 CBS domain RIMD111065_05560 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_05560 PF08264 Anticodon-binding domain of tRNA RIMD111065_05560 PF10458 Valyl tRNA synthetase tRNA binding arm RIMD111065_05570 PF04364 DNA polymerase III chi subunit, HolC RIMD111065_05580 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_05580 PF02789 Cytosol aminopeptidase family, N-terminal domain RIMD111065_05590 PF03739 Lipopolysaccharide export system permease LptF/LptG RIMD111065_05600 PF03739 Lipopolysaccharide export system permease LptF/LptG RIMD111065_05620 PF00909 Ammonium Transporter Family RIMD111065_05630 PF01938 TRAM domain RIMD111065_05630 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_05650 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_05660 PF01026 TatD related DNase RIMD111065_05670 PF07670 Nucleoside recognition RIMD111065_05670 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_05670 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_05690 PF01791 DeoC/LacD family aldolase RIMD111065_05700 PF00591 Glycosyl transferase family, a/b domain RIMD111065_05700 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_05700 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain RIMD111065_05710 PF01676 Metalloenzyme superfamily RIMD111065_05720 PF01048 Phosphorylase superfamily RIMD111065_05730 PF00563 EAL domain RIMD111065_05730 PF08447 PAS fold RIMD111065_05730 PF08448 PAS fold RIMD111065_05730 PF05231 MASE1 RIMD111065_05730 PF13426 PAS domain RIMD111065_05730 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_05750 PF18429 Domain of unknown function (DUF5609) RIMD111065_05780 PF18073 Rubredoxin metal binding domain RIMD111065_05790 PF07238 PilZ domain RIMD111065_05800 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ RIMD111065_05810 PF00216 Bacterial DNA-binding protein RIMD111065_05840 PF01207 Dihydrouridine synthase (Dus) RIMD111065_05850 PF01475 Ferric uptake regulator family RIMD111065_05880 PF05525 Branched-chain amino acid transport protein RIMD111065_05890 PF05525 Branched-chain amino acid transport protein RIMD111065_05900 PF05175 Methyltransferase small domain RIMD111065_05910 PF00271 Helicase conserved C-terminal domain RIMD111065_05910 PF00270 DEAD/DEAH box helicase RIMD111065_05920 PF03883 Peroxide stress protein YaaA RIMD111065_05930 PF00437 Type II/IV secretion system protein RIMD111065_05940 PF00437 Type II/IV secretion system protein RIMD111065_05950 PF01168 Alanine racemase, N-terminal domain RIMD111065_05960 PF14748 Pyrroline-5-carboxylate reductase dimerisation RIMD111065_05960 PF03807 NADP oxidoreductase coenzyme F420-dependent RIMD111065_05970 PF02325 YGGT family RIMD111065_05980 PF02594 Uncharacterised ACR, YggU family COG1872 RIMD111065_06010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_06030 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_06040 PF10952 Protein of unknown function (DUF2753) RIMD111065_06050 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_06080 PF00106 short chain dehydrogenase RIMD111065_06090 PF04073 Aminoacyl-tRNA editing domain RIMD111065_06090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_06090 PF03129 Anticodon binding domain RIMD111065_06100 PF00672 HAMP domain RIMD111065_06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_06110 PF07499 RuvA, C-terminal domain RIMD111065_06110 PF01330 RuvA N terminal domain RIMD111065_06120 PF17864 RuvB AAA lid domain RIMD111065_06120 PF05491 RuvB C-terminal winged helix domain RIMD111065_06120 PF05496 Holliday junction DNA helicase RuvB P-loop domain RIMD111065_06130 PF01654 Cytochrome bd terminal oxidase subunit I RIMD111065_06140 PF02322 Cytochrome bd terminal oxidase subunit II RIMD111065_06150 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) RIMD111065_06160 PF03061 Thioesterase superfamily RIMD111065_06170 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_06180 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_06200 PF07676 WD40-like Beta Propeller Repeat RIMD111065_06200 PF04052 TolB amino-terminal domain RIMD111065_06210 PF00691 OmpA family RIMD111065_06220 PF16331 TolA binding protein trimerisation RIMD111065_06220 PF13174 Tetratricopeptide repeat RIMD111065_06230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_06230 PF00672 HAMP domain RIMD111065_06240 PF02445 Quinolinate synthetase A protein RIMD111065_06250 PF01263 Aldose 1-epimerase RIMD111065_06260 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_06260 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_06270 PF02446 4-alpha-glucanotransferase RIMD111065_06280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_06280 PF02806 Alpha amylase, C-terminal all-beta domain RIMD111065_06280 PF00128 Alpha amylase, catalytic domain RIMD111065_06290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_06290 PF00128 Alpha amylase, catalytic domain RIMD111065_06300 PF01641 SelR domain RIMD111065_06320 PF00293 NUDIX domain RIMD111065_06330 PF16884 N-terminal domain of oxidoreductase RIMD111065_06330 PF00107 Zinc-binding dehydrogenase RIMD111065_06340 PF02566 OsmC-like protein RIMD111065_06350 PF01047 MarR family RIMD111065_06380 PF01037 Lrp/AsnC ligand binding domain RIMD111065_06410 PF07690 Major Facilitator Superfamily RIMD111065_06450 PF00209 Sodium:neurotransmitter symporter family RIMD111065_06470 PF00209 Sodium:neurotransmitter symporter family RIMD111065_06520 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_06520 PF00155 Aminotransferase class I and II RIMD111065_06540 PF01810 LysE type translocator RIMD111065_06550 PF01177 Asp/Glu/Hydantoin racemase RIMD111065_06560 PF07732 Multicopper oxidase RIMD111065_06560 PF07731 Multicopper oxidase RIMD111065_06560 PF00394 Multicopper oxidase RIMD111065_06580 PF04074 YhcH/YjgK/YiaL RIMD111065_06590 PF00871 Acetokinase family RIMD111065_06600 PF00924 Mechanosensitive ion channel RIMD111065_06610 PF03734 L,D-transpeptidase catalytic domain RIMD111065_06610 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_06620 PF00474 Sodium:solute symporter family RIMD111065_06710 PF02525 Flavodoxin-like fold RIMD111065_06720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_06720 PF03466 LysR substrate binding domain RIMD111065_06730 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ RIMD111065_06750 PF12848 ABC transporter RIMD111065_06750 PF00005 ABC transporter RIMD111065_06760 PF01380 SIS domain RIMD111065_06760 PF00571 CBS domain RIMD111065_06770 PF01957 NfeD-like C-terminal, partner-binding RIMD111065_06780 PF01145 SPFH domain / Band 7 family RIMD111065_06780 PF16200 C-terminal region of band_7 RIMD111065_06790 PF14824 Sirohaem biosynthesis protein central RIMD111065_06790 PF10414 Sirohaem synthase dimerisation region RIMD111065_06790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_06800 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_06810 PF00009 Elongation factor Tu GTP binding domain RIMD111065_06820 PF03600 Citrate transporter RIMD111065_06820 PF02080 TrkA-C domain RIMD111065_06910 PF00005 ABC transporter RIMD111065_06940 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) RIMD111065_06970 PF00719 Inorganic pyrophosphatase RIMD111065_06980 PF08245 Mur ligase middle domain RIMD111065_06980 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_06980 PF01225 Mur ligase family, catalytic domain RIMD111065_06990 PF02441 Flavoprotein RIMD111065_07000 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_07010 PF00156 Phosphoribosyl transferase domain RIMD111065_07020 PF00005 ABC transporter RIMD111065_07030 PF01061 ABC-2 type transporter RIMD111065_07040 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component RIMD111065_07050 PF01869 BadF/BadG/BcrA/BcrD ATPase family RIMD111065_07090 PF02569 Pantoate-beta-alanine ligase RIMD111065_07100 PF02548 Ketopantoate hydroxymethyltransferase RIMD111065_07110 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) RIMD111065_07120 PF01743 Poly A polymerase head domain RIMD111065_07120 PF12626 Polymerase A arginine-rich C-terminus RIMD111065_07120 PF12627 Probable RNA and SrmB- binding site of polymerase A RIMD111065_07130 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_07140 PF01258 Prokaryotic dksA/traR C4-type zinc finger RIMD111065_07150 PF03749 Sugar fermentation stimulation protein RE domain RIMD111065_07150 PF17746 SfsA N-terminal OB domain RIMD111065_07170 PF00271 Helicase conserved C-terminal domain RIMD111065_07170 PF08482 ATP-dependent helicase C-terminal RIMD111065_07170 PF04408 Helicase associated domain (HA2) RIMD111065_07170 PF00270 DEAD/DEAH box helicase RIMD111065_07180 PF00912 Transglycosylase RIMD111065_07180 PF14814 Bifunctional transglycosylase second domain RIMD111065_07180 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_07190 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_07200 PF00893 Small Multidrug Resistance protein RIMD111065_07210 PF00893 Small Multidrug Resistance protein RIMD111065_07230 PF11849 Domain of unknown function (DUF3369) RIMD111065_07250 PF01569 PAP2 superfamily RIMD111065_07280 PF00202 Aminotransferase class-III RIMD111065_07290 PF00654 Voltage gated chloride channel RIMD111065_07310 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_07320 PF01810 LysE type translocator RIMD111065_07350 PF05930 Prophage CP4-57 regulatory protein (AlpA) RIMD111065_07440 PF04002 RadC-like JAB domain RIMD111065_07530 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RIMD111065_07540 PF02384 N-6 DNA Methylase RIMD111065_07550 PF01420 Type I restriction modification DNA specificity domain RIMD111065_07560 PF12102 Domain of unknown function (DUF3578) RIMD111065_07560 PF12102 Domain of unknown function (DUF3578) RIMD111065_07560 PF07728 AAA domain (dynein-related subfamily) RIMD111065_07560 PF07728 AAA domain (dynein-related subfamily) RIMD111065_07580 PF11867 Domain of unknown function (DUF3387) RIMD111065_07580 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_07580 PF18766 SWI2/SNF2 ATPase RIMD111065_07590 PF13195 Protein of unknown function (DUF4011) RIMD111065_07590 PF13086 AAA domain RIMD111065_07590 PF13086 AAA domain RIMD111065_07590 PF13087 AAA domain RIMD111065_07590 PF13087 AAA domain RIMD111065_07590 PF13195 Protein of unknown function (DUF4011) RIMD111065_07600 PF02954 Bacterial regulatory protein, Fis family RIMD111065_07610 PF01207 Dihydrouridine synthase (Dus) RIMD111065_07620 PF02321 Outer membrane efflux protein RIMD111065_07630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_07690 PF00072 Response regulator receiver domain RIMD111065_07700 PF00854 POT family RIMD111065_07710 PF00483 Nucleotidyl transferase RIMD111065_07730 PF00459 Inositol monophosphatase family RIMD111065_07740 PF03795 YCII-related domain RIMD111065_07750 PF04279 Intracellular septation protein A RIMD111065_07760 PF00282 Pyridoxal-dependent decarboxylase conserved domain RIMD111065_07770 PF03006 Haemolysin-III related RIMD111065_07780 PF02080 TrkA-C domain RIMD111065_07780 PF06826 Predicted Permease Membrane Region RIMD111065_07800 PF01584 CheW-like domain RIMD111065_07800 PF00072 Response regulator receiver domain RIMD111065_07810 PF13472 GDSL-like Lipase/Acylhydrolase family RIMD111065_07830 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_07830 PF08338 Domain of unknown function (DUF1731) RIMD111065_07850 PF12792 CSS motif domain associated with EAL RIMD111065_07850 PF00563 EAL domain RIMD111065_07860 PF00155 Aminotransferase class I and II RIMD111065_07870 PF04389 Peptidase family M28 RIMD111065_07870 PF01483 Proprotein convertase P-domain RIMD111065_07880 PF02390 Putative methyltransferase RIMD111065_07890 PF04320 Protein with unknown function (DUF469) RIMD111065_07900 PF04960 Glutaminase RIMD111065_07910 PF00581 Rhodanese-like domain RIMD111065_07920 PF05922 Peptidase inhibitor I9 RIMD111065_07920 PF00082 Subtilase family RIMD111065_07930 PF06004 Bacterial protein of unknown function (DUF903) RIMD111065_07940 PF00005 ABC transporter RIMD111065_07940 PF00664 ABC transporter transmembrane region RIMD111065_07950 PF00561 alpha/beta hydrolase fold RIMD111065_07970 PF00801 PKD domain RIMD111065_07970 PF05547 Immune inhibitor A peptidase M6 RIMD111065_07980 PF06877 Regulator of ribonuclease activity B RIMD111065_07990 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_07990 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_07990 PF00563 EAL domain RIMD111065_08010 PF12852 Cupin RIMD111065_08010 PF12833 Helix-turn-helix domain RIMD111065_08020 PF02627 Carboxymuconolactone decarboxylase family RIMD111065_08030 PF04224 Protein of unknown function, DUF417 RIMD111065_08060 PF09905 DNA-binding protein VF530 RIMD111065_08070 PF02666 Phosphatidylserine decarboxylase RIMD111065_08080 PF03193 RsgA GTPase RIMD111065_08090 PF00929 Exonuclease RIMD111065_08100 PF00313 'Cold-shock' DNA-binding domain RIMD111065_08120 PF00672 HAMP domain RIMD111065_08120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_08130 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_08140 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_08170 PF00704 Glycosyl hydrolases family 18 RIMD111065_08170 PF06483 Chitinase C RIMD111065_08200 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_08210 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_08220 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_08240 PF00593 TonB dependent receptor RIMD111065_08240 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_08250 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_08260 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_08260 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_08280 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_08280 PF00005 ABC transporter RIMD111065_08290 PF00005 ABC transporter RIMD111065_08290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_08310 PF07687 Peptidase dimerisation domain RIMD111065_08310 PF01546 Peptidase family M20/M25/M40 RIMD111065_08320 PF00156 Phosphoribosyl transferase domain RIMD111065_08330 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) RIMD111065_08340 PF07417 Sigma factor-binding transcriptional regulator Crl RIMD111065_08350 PF01472 PUA domain RIMD111065_08350 PF00696 Amino acid kinase family RIMD111065_08360 PF00171 Aldehyde dehydrogenase family RIMD111065_08380 PF00582 Universal stress protein family RIMD111065_08410 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_08410 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_08410 PF00384 Molybdopterin oxidoreductase RIMD111065_08410 PF01568 Molydopterin dinucleotide binding domain RIMD111065_08420 PF14824 Sirohaem biosynthesis protein central RIMD111065_08420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_08420 PF10414 Sirohaem synthase dimerisation region RIMD111065_08440 PF00005 ABC transporter RIMD111065_08450 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_08460 PF00005 ABC transporter RIMD111065_08470 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_08470 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_08470 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_08470 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_08470 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_08470 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_08480 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_08480 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_08480 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_08480 PF18267 Rubredoxin NAD+ reductase C-terminal domain RIMD111065_08480 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_08480 PF13806 Rieske-like [2Fe-2S] domain RIMD111065_08490 PF00294 pfkB family carbohydrate kinase RIMD111065_08500 PF04227 Indigoidine synthase A like protein RIMD111065_08510 PF00194 Eukaryotic-type carbonic anhydrase RIMD111065_08520 PF00034 Cytochrome c RIMD111065_08520 PF03150 Di-haem cytochrome c peroxidase RIMD111065_08590 PF00550 Phosphopantetheine attachment site RIMD111065_08600 PF00550 Phosphopantetheine attachment site RIMD111065_08620 PF00501 AMP-binding enzyme RIMD111065_08620 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_08630 PF07977 FabA-like domain RIMD111065_08650 PF00221 Aromatic amino acid lyase RIMD111065_08700 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_08700 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_08730 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_08730 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_08750 PF00994 Probable molybdopterin binding domain RIMD111065_08770 PF06738 Putative threonine/serine exporter RIMD111065_08780 PF12821 Threonine/Serine exporter, ThrE RIMD111065_08790 PF00186 Dihydrofolate reductase RIMD111065_08800 PF00005 ABC transporter RIMD111065_08800 PF00571 CBS domain RIMD111065_08810 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_08820 PF04069 Substrate binding domain of ABC-type glycine betaine transport system RIMD111065_08830 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_08840 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_08840 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_08850 PF00667 FAD binding domain RIMD111065_08850 PF00258 Flavodoxin RIMD111065_08850 PF00175 Oxidoreductase NAD-binding domain RIMD111065_08860 PF02567 Phenazine biosynthesis-like protein RIMD111065_08870 PF01336 OB-fold nucleic acid binding domain RIMD111065_08870 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_08880 PF03462 PCRF domain RIMD111065_08880 PF00472 RF-1 domain RIMD111065_08890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_08890 PF00672 HAMP domain RIMD111065_08890 PF02743 Cache domain RIMD111065_08900 PF03616 Sodium/glutamate symporter RIMD111065_08910 PF17763 Glutaminase/Asparaginase C-terminal domain RIMD111065_08910 PF00710 Asparaginase, N-terminal RIMD111065_08920 PF07023 Protein of unknown function (DUF1315) RIMD111065_08930 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_08930 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_08960 PF01343 Peptidase family S49 RIMD111065_08970 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_08970 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_08980 PF00881 Nitroreductase family RIMD111065_08990 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_08990 PF12464 Maltose acetyltransferase RIMD111065_09000 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_09000 PF01842 ACT domain RIMD111065_09000 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_09020 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_09020 PF00107 Zinc-binding dehydrogenase RIMD111065_09030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_09030 PF03466 LysR substrate binding domain RIMD111065_09040 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_09040 PF02378 Phosphotransferase system, EIIC RIMD111065_09040 PF00367 phosphotransferase system, EIIB RIMD111065_09050 PF00474 Sodium:solute symporter family RIMD111065_09070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_09070 PF00289 Biotin carboxylase, N-terminal domain RIMD111065_09070 PF02785 Biotin carboxylase C-terminal domain RIMD111065_09080 PF00364 Biotin-requiring enzyme RIMD111065_09090 PF01220 Dehydroquinase class II RIMD111065_09100 PF16177 Acetyl-coenzyme A synthetase N-terminus RIMD111065_09100 PF00501 AMP-binding enzyme RIMD111065_09100 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_09110 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_09110 PF16177 Acetyl-coenzyme A synthetase N-terminus RIMD111065_09110 PF00501 AMP-binding enzyme RIMD111065_09130 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_09130 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_09130 PF13188 PAS domain RIMD111065_09130 PF00563 EAL domain RIMD111065_09170 PF02613 Nitrate reductase delta subunit RIMD111065_09200 PF00464 Serine hydroxymethyltransferase RIMD111065_09220 PF03477 ATP cone domain RIMD111065_09230 PF01872 RibD C-terminal domain RIMD111065_09230 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_09240 PF00677 Lumazine binding domain RIMD111065_09250 PF00925 GTP cyclohydrolase II RIMD111065_09250 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RIMD111065_09260 PF00885 6,7-dimethyl-8-ribityllumazine synthase RIMD111065_09270 PF01029 NusB family RIMD111065_09280 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_09280 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_09290 PF04608 Phosphatidylglycerophosphatase A RIMD111065_09300 PF00005 ABC transporter RIMD111065_09300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_09310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_09320 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_09330 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_09330 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_09340 PF02780 Transketolase, C-terminal domain RIMD111065_09340 PF02779 Transketolase, pyrimidine binding domain RIMD111065_09340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase RIMD111065_09350 PF00348 Polyprenyl synthetase RIMD111065_09360 PF02609 Exonuclease VII small subunit RIMD111065_09370 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_09380 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_09380 PF00691 OmpA family RIMD111065_09390 PF03449 Transcription elongation factor, N-terminal RIMD111065_09390 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_09410 PF01985 CRS1 / YhbY (CRM) domain RIMD111065_09420 PF01728 FtsJ-like methyltransferase RIMD111065_09430 PF01434 Peptidase family M41 RIMD111065_09430 PF17862 AAA+ lid domain RIMD111065_09430 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_09430 PF06480 FtsH Extracellular RIMD111065_09440 PF00809 Pterin binding enzyme RIMD111065_09450 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RIMD111065_09450 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RIMD111065_09450 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RIMD111065_09450 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RIMD111065_09460 PF00121 Triosephosphate isomerase RIMD111065_09470 PF03840 Preprotein translocase SecG subunit RIMD111065_09480 PF02576 RimP N-terminal domain RIMD111065_09480 PF17384 RimP C-terminal SH3 domain RIMD111065_09490 PF13184 NusA-like KH domain RIMD111065_09490 PF08529 NusA N-terminal domain RIMD111065_09490 PF00575 S1 RNA binding domain RIMD111065_09500 PF00009 Elongation factor Tu GTP binding domain RIMD111065_09500 PF11987 Translation-initiation factor 2 RIMD111065_09500 PF04760 Translation initiation factor IF-2, N-terminal region RIMD111065_09500 PF08364 Bacterial translation initiation factor IF-2 associated region RIMD111065_09510 PF02033 Ribosome-binding factor A RIMD111065_09520 PF01509 TruB family pseudouridylate synthase (N terminal domain) RIMD111065_09520 PF16198 tRNA pseudouridylate synthase B C-terminal domain RIMD111065_09520 PF09157 Pseudouridine synthase II TruB, C-terminal RIMD111065_09530 PF00312 Ribosomal protein S15 RIMD111065_09540 PF01138 3' exoribonuclease family, domain 1 RIMD111065_09540 PF03725 3' exoribonuclease family, domain 2 RIMD111065_09540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain RIMD111065_09540 PF00013 KH domain RIMD111065_09540 PF00575 S1 RNA binding domain RIMD111065_09550 PF07690 Major Facilitator Superfamily RIMD111065_09560 PF00563 EAL domain RIMD111065_09560 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_09560 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_09570 PF02635 DsrE/DsrF-like family RIMD111065_09590 PF00206 Lyase RIMD111065_09590 PF10415 Fumarase C C-terminus RIMD111065_09600 PF03575 Peptidase family S51 RIMD111065_09610 PF02554 Carbon starvation protein CstA RIMD111065_09610 PF13722 5TM C-terminal transporter carbon starvation CstA RIMD111065_09630 PF00072 Response regulator receiver domain RIMD111065_09630 PF04397 LytTr DNA-binding domain RIMD111065_09640 PF07694 5TMR of 5TMR-LYT RIMD111065_09640 PF06580 Histidine kinase RIMD111065_09650 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_09650 PF00072 Response regulator receiver domain RIMD111065_09660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_09660 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_09660 PF00989 PAS fold RIMD111065_09670 PF13247 4Fe-4S dicluster domain RIMD111065_09680 PF03916 Polysulphide reductase, NrfD RIMD111065_09690 PF01568 Molydopterin dinucleotide binding domain RIMD111065_09690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_09690 PF00384 Molybdopterin oxidoreductase RIMD111065_09730 PF02668 Taurine catabolism dioxygenase TauD, TfdA family RIMD111065_09740 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase RIMD111065_09750 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_09750 PF03734 L,D-transpeptidase catalytic domain RIMD111065_09780 PF01523 Putative modulator of DNA gyrase RIMD111065_09790 PF01523 Putative modulator of DNA gyrase RIMD111065_09800 PF00258 Flavodoxin RIMD111065_09810 PF02899 Phage integrase, N-terminal SAM-like domain RIMD111065_09810 PF00589 Phage integrase family RIMD111065_09820 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_09830 PF01741 Large-conductance mechanosensitive channel, MscL RIMD111065_09840 PF10411 Disulfide bond isomerase protein N-terminus RIMD111065_09840 PF13098 Thioredoxin-like domain RIMD111065_09850 PF02272 DHHA1 domain RIMD111065_09850 PF17768 RecJ OB domain RIMD111065_09850 PF01368 DHH family RIMD111065_09870 PF13411 MerR HTH family regulatory protein RIMD111065_09900 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_09910 PF12146 Serine aminopeptidase, S33 RIMD111065_09930 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family RIMD111065_09930 PF04055 Radical SAM superfamily RIMD111065_09940 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_09950 PF04359 Protein of unknown function (DUF493) RIMD111065_09960 PF07943 Penicillin-binding protein 5, C-terminal domain RIMD111065_09960 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_09970 PF03330 Lytic transglycolase RIMD111065_09970 PF05036 Sporulation related domain RIMD111065_09980 PF13406 Transglycosylase SLT domain RIMD111065_09990 PF01098 Cell cycle protein RIMD111065_10000 PF03717 Penicillin-binding Protein dimerisation domain RIMD111065_10000 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_10010 PF02590 Predicted SPOUT methyltransferase RIMD111065_10030 PF01467 Cytidylyltransferase-like RIMD111065_10070 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_10070 PF08264 Anticodon-binding domain of tRNA RIMD111065_10070 PF13603 Leucyl-tRNA synthetase, Domain 2 RIMD111065_10080 PF07295 Zinc-ribbon containing domain RIMD111065_10090 PF00795 Carbon-nitrogen hydrolase RIMD111065_10100 PF03471 Transporter associated domain RIMD111065_10100 PF00571 CBS domain RIMD111065_10110 PF02130 Uncharacterized protein family UPF0054 RIMD111065_10120 PF02562 PhoH-like protein RIMD111065_10130 PF04055 Radical SAM superfamily RIMD111065_10130 PF00919 Uncharacterized protein family UPF0004 RIMD111065_10130 PF01938 TRAM domain RIMD111065_10140 PF01494 FAD binding domain RIMD111065_10150 PF00857 Isochorismatase family RIMD111065_10160 PF00313 'Cold-shock' DNA-binding domain RIMD111065_10170 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_10170 PF05230 MASE2 domain RIMD111065_10180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_10180 PF03466 LysR substrate binding domain RIMD111065_10200 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_10220 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_10220 PF08448 PAS fold RIMD111065_10240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_10240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_10260 PF09997 Predicted membrane protein (DUF2238) RIMD111065_10270 PF09285 Elongation factor P, C-terminal RIMD111065_10270 PF08207 Elongation factor P (EF-P) KOW-like domain RIMD111065_10270 PF01132 Elongation factor P (EF-P) OB domain RIMD111065_10290 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_10310 PF08521 Two-component sensor kinase N-terminal RIMD111065_10310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_10310 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_10320 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_10320 PF00072 Response regulator receiver domain RIMD111065_10360 PF00501 AMP-binding enzyme RIMD111065_10390 PF06224 Winged helix DNA-binding domain RIMD111065_10430 PF02313 Fumarate reductase subunit D RIMD111065_10440 PF02300 Fumarate reductase subunit C RIMD111065_10450 PF13183 4Fe-4S dicluster domain RIMD111065_10450 PF13085 2Fe-2S iron-sulfur cluster binding domain RIMD111065_10460 PF00890 FAD binding domain RIMD111065_10460 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_10470 PF02743 Cache domain RIMD111065_10470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_10470 PF00672 HAMP domain RIMD111065_10480 PF03009 Glycerophosphoryl diester phosphodiesterase family RIMD111065_10490 PF12794 Mechanosensitive ion channel inner membrane domain 1 RIMD111065_10490 PF00924 Mechanosensitive ion channel RIMD111065_10490 PF12795 Mechanosensitive ion channel porin domain RIMD111065_10510 PF01551 Peptidase family M23 RIMD111065_10510 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_10510 PF01476 LysM domain RIMD111065_10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_10540 PF03466 LysR substrate binding domain RIMD111065_10570 PF00672 HAMP domain RIMD111065_10570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_10570 PF02743 Cache domain RIMD111065_10580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_10580 PF03466 LysR substrate binding domain RIMD111065_10590 PF17092 Penicillin-binding protein OB-like domain RIMD111065_10590 PF00912 Transglycosylase RIMD111065_10590 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_10600 PF11104 Type IV pilus assembly protein PilM; RIMD111065_10620 PF04350 Pilus assembly protein, PilO RIMD111065_10640 PF00263 Bacterial type II and III secretion system protein RIMD111065_10640 PF03958 Bacterial type II/III secretion system short domain RIMD111065_10640 PF07660 Secretin and TonB N terminus short domain RIMD111065_10640 PF11741 AMIN domain RIMD111065_10650 PF01202 Shikimate kinase RIMD111065_10660 PF01761 3-dehydroquinate synthase RIMD111065_10680 PF02086 D12 class N6 adenine-specific DNA methyltransferase RIMD111065_10690 PF00834 Ribulose-phosphate 3 epimerase family RIMD111065_10700 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_10710 PF00579 tRNA synthetases class I (W and Y) RIMD111065_10730 PF00117 Glutamine amidotransferase class-I RIMD111065_10740 PF00202 Aminotransferase class-III RIMD111065_10750 PF04958 Arginine N-succinyltransferase beta subunit RIMD111065_10760 PF00171 Aldehyde dehydrogenase family RIMD111065_10780 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_10790 PF07690 Major Facilitator Superfamily RIMD111065_10800 PF10371 Domain of unknown function RIMD111065_10800 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RIMD111065_10800 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RIMD111065_10800 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RIMD111065_10800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_10820 PF16657 Maltogenic Amylase, C-terminal domain RIMD111065_10820 PF00128 Alpha amylase, catalytic domain RIMD111065_10840 PF04266 ASCH domain RIMD111065_10860 PF01048 Phosphorylase superfamily RIMD111065_10870 PF04973 Nicotinamide mononucleotide transporter RIMD111065_10880 PF03600 Citrate transporter RIMD111065_10880 PF02080 TrkA-C domain RIMD111065_10900 PF13737 Transposase DDE domain RIMD111065_10910 PF00455 DeoR C terminal sensor domain RIMD111065_10910 PF08220 DeoR-like helix-turn-helix domain RIMD111065_10920 PF08013 Tagatose 6 phosphate kinase RIMD111065_10930 PF01380 SIS domain RIMD111065_10940 PF01979 Amidohydrolase family RIMD111065_10950 PF01116 Fructose-bisphosphate aldolase class-II RIMD111065_10960 PF03830 PTS system sorbose subfamily IIB component RIMD111065_10970 PF03609 PTS system sorbose-specific iic component RIMD111065_10980 PF03613 PTS system mannose/fructose/sorbose family IID component RIMD111065_11000 PF04962 KduI/IolB family RIMD111065_11020 PF07470 Glycosyl Hydrolase Family 88 RIMD111065_11030 PF13186 Iron-sulfur cluster-binding domain RIMD111065_11030 PF04055 Radical SAM superfamily RIMD111065_11040 PF00884 Sulfatase RIMD111065_11060 PF00294 pfkB family carbohydrate kinase RIMD111065_11070 PF01081 KDPG and KHG aldolase RIMD111065_11090 PF00884 Sulfatase RIMD111065_11100 PF06178 Oligogalacturonate-specific porin protein (KdgM) RIMD111065_11110 PF02884 Polysaccharide lyase family 8, C-terminal beta-sandwich domain RIMD111065_11110 PF08124 Polysaccharide lyase family 8, N terminal alpha-helical domain RIMD111065_11110 PF02278 Polysaccharide lyase family 8, super-sandwich domain RIMD111065_11120 PF06071 Protein of unknown function (DUF933) RIMD111065_11120 PF01926 50S ribosome-binding GTPase RIMD111065_11130 PF01195 Peptidyl-tRNA hydrolase RIMD111065_11140 PF00149 Calcineurin-like phosphoesterase RIMD111065_11140 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_11150 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase RIMD111065_11150 PF14572 Phosphoribosyl synthetase-associated domain RIMD111065_11160 PF00288 GHMP kinases N terminal domain RIMD111065_11160 PF08544 GHMP kinases C terminal RIMD111065_11170 PF03550 Outer membrane lipoprotein LolB RIMD111065_11180 PF01488 Shikimate / quinate 5-dehydrogenase RIMD111065_11180 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain RIMD111065_11180 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain RIMD111065_11190 PF00472 RF-1 domain RIMD111065_11190 PF03462 PCRF domain RIMD111065_11200 PF13847 Methyltransferase domain RIMD111065_11200 PF17827 PrmC N-terminal domain RIMD111065_11220 PF13369 Transglutaminase-like superfamily RIMD111065_11230 PF00793 DAHP synthetase I family RIMD111065_11240 PF00375 Sodium:dicarboxylate symporter family RIMD111065_11250 PF01228 Glycine radical RIMD111065_11260 PF03167 Uracil DNA glycosylase superfamily RIMD111065_11290 PF00923 Transaldolase/Fructose-6-phosphate aldolase RIMD111065_11300 PF01235 Sodium:alanine symporter family RIMD111065_11310 PF01841 Transglutaminase-like superfamily RIMD111065_11310 PF13559 Domain of unknown function (DUF4129) RIMD111065_11310 PF11992 Domain of unknown function (DUF3488) RIMD111065_11330 PF07726 ATPase family associated with various cellular activities (AAA) RIMD111065_11330 PF17863 AAA lid domain RIMD111065_11340 PF00144 Beta-lactamase RIMD111065_11370 PF03466 LysR substrate binding domain RIMD111065_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_11380 PF00854 POT family RIMD111065_11390 PF03652 Holliday junction resolvase RIMD111065_11400 PF02622 Uncharacterized ACR, COG1678 RIMD111065_11410 PF00672 HAMP domain RIMD111065_11410 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_11410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_11420 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain RIMD111065_11420 PF02951 Prokaryotic glutathione synthetase, N-terminal domain RIMD111065_11430 PF04452 RNA methyltransferase RIMD111065_11440 PF04231 Endonuclease I RIMD111065_11450 PF17283 SprT-like zinc ribbon domain RIMD111065_11450 PF10263 SprT-like family RIMD111065_11460 PF00438 S-adenosylmethionine synthetase, N-terminal domain RIMD111065_11460 PF02773 S-adenosylmethionine synthetase, C-terminal domain RIMD111065_11460 PF02772 S-adenosylmethionine synthetase, central domain RIMD111065_11470 PF02780 Transketolase, C-terminal domain RIMD111065_11470 PF02779 Transketolase, pyrimidine binding domain RIMD111065_11470 PF00456 Transketolase, thiamine diphosphate binding domain RIMD111065_11490 PF01042 Endoribonuclease L-PSP RIMD111065_11500 PF01965 DJ-1/PfpI family RIMD111065_11510 PF03702 Anhydro-N-acetylmuramic acid kinase RIMD111065_11520 PF01551 Peptidase family M23 RIMD111065_11520 PF01476 LysM domain RIMD111065_11520 PF08525 Opacity-associated protein A N-terminal motif RIMD111065_11530 PF00579 tRNA synthetases class I (W and Y) RIMD111065_11540 PF01204 Trehalase RIMD111065_11560 PF01161 Phosphatidylethanolamine-binding protein RIMD111065_11570 PF00709 Adenylosuccinate synthetase RIMD111065_11580 PF03466 LysR substrate binding domain RIMD111065_11580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_11600 PF00155 Aminotransferase class I and II RIMD111065_11610 PF07690 Major Facilitator Superfamily RIMD111065_11620 PF03466 LysR substrate binding domain RIMD111065_11620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_11630 PF00106 short chain dehydrogenase RIMD111065_11640 PF08496 Peptidase family S49 N-terminal RIMD111065_11640 PF01343 Peptidase family S49 RIMD111065_11650 PF04996 Succinylarginine dihydrolase RIMD111065_11660 PF08272 Topoisomerase I zinc-ribbon-like RIMD111065_11660 PF01396 Topoisomerase DNA binding C4 zinc finger RIMD111065_11660 PF01131 DNA topoisomerase RIMD111065_11660 PF01751 Toprim domain RIMD111065_11690 PF08447 PAS fold RIMD111065_11690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_11700 PF00728 Glycosyl hydrolase family 20, catalytic domain RIMD111065_11700 PF02838 Glycosyl hydrolase family 20, domain 2 RIMD111065_11720 PF01869 BadF/BadG/BcrA/BcrD ATPase family RIMD111065_11740 PF00005 ABC transporter RIMD111065_11740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_11750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_11750 PF00005 ABC transporter RIMD111065_11760 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_11760 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_11770 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_11780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_11790 PF09308 LuxQ, periplasmic RIMD111065_11790 PF00072 Response regulator receiver domain RIMD111065_11790 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_11810 PF10725 Protein of unknown function (DUF2517) RIMD111065_11840 PF05114 Protein of unknown function (DUF692) RIMD111065_11880 PF13426 PAS domain RIMD111065_11880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_11880 PF08447 PAS fold RIMD111065_11910 PF04632 Fusaric acid resistance protein family RIMD111065_11920 PF00994 Probable molybdopterin binding domain RIMD111065_11920 PF03453 MoeA N-terminal region (domain I and II) RIMD111065_11920 PF03454 MoeA C-terminal region (domain IV) RIMD111065_11930 PF12804 MobA-like NTP transferase domain RIMD111065_11940 PF00005 ABC transporter RIMD111065_11950 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_11960 PF12849 PBP superfamily domain RIMD111065_11970 PF02954 Bacterial regulatory protein, Fis family RIMD111065_11970 PF00072 Response regulator receiver domain RIMD111065_11970 PF00158 Sigma-54 interaction domain RIMD111065_11980 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_11980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_11980 PF00989 PAS fold RIMD111065_11990 PF12727 PBP superfamily domain RIMD111065_11990 PF12728 Helix-turn-helix domain RIMD111065_12000 PF02634 FdhD/NarQ family RIMD111065_12080 PF12838 4Fe-4S dicluster domain RIMD111065_12080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_12080 PF00384 Molybdopterin oxidoreductase RIMD111065_12080 PF12838 4Fe-4S dicluster domain RIMD111065_12080 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_12080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_12080 PF00384 Molybdopterin oxidoreductase RIMD111065_12080 PF01568 Molydopterin dinucleotide binding domain RIMD111065_12080 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_12080 PF01568 Molydopterin dinucleotide binding domain RIMD111065_12090 PF13247 4Fe-4S dicluster domain RIMD111065_12110 PF00072 Response regulator receiver domain RIMD111065_12120 PF03949 Malic enzyme, NAD binding domain RIMD111065_12120 PF00390 Malic enzyme, N-terminal domain RIMD111065_12150 PF00860 Permease family RIMD111065_12160 PF10282 Lactonase, 7-bladed beta-propeller RIMD111065_12180 PF12795 Mechanosensitive ion channel porin domain RIMD111065_12180 PF00924 Mechanosensitive ion channel RIMD111065_12180 PF12794 Mechanosensitive ion channel inner membrane domain 1 RIMD111065_12190 PF00224 Pyruvate kinase, barrel domain RIMD111065_12190 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_12210 PF04151 Bacterial pre-peptidase C-terminal domain RIMD111065_12210 PF04389 Peptidase family M28 RIMD111065_12230 PF00999 Sodium/hydrogen exchanger family RIMD111065_12230 PF02254 TrkA-N domain RIMD111065_12250 PF04381 Putative exonuclease, RdgC RIMD111065_12270 PF00149 Calcineurin-like phosphoesterase RIMD111065_12270 PF12320 Type 5 capsule protein repressor C-terminal domain RIMD111065_12280 PF13476 AAA domain RIMD111065_12300 PF01292 Prokaryotic cytochrome b561 RIMD111065_12320 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_12330 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_12340 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_12340 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_12340 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_12350 PF00381 PTS HPr component phosphorylation site RIMD111065_12360 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_12370 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_12370 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_12370 PF17871 AAA lid domain RIMD111065_12370 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_12370 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_12390 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_12390 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_12400 PF18389 TrmO C-terminal domain RIMD111065_12400 PF01980 tRNA-methyltransferase O RIMD111065_12440 PF00664 ABC transporter transmembrane region RIMD111065_12440 PF00005 ABC transporter RIMD111065_12450 PF00005 ABC transporter RIMD111065_12450 PF00664 ABC transporter transmembrane region RIMD111065_12460 PF00072 Response regulator receiver domain RIMD111065_12460 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_12480 PF03737 Aldolase/RraA RIMD111065_12510 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) RIMD111065_12520 PF00588 SpoU rRNA Methylase family RIMD111065_12530 PF03447 Homoserine dehydrogenase, NAD binding domain RIMD111065_12530 PF00742 Homoserine dehydrogenase RIMD111065_12530 PF01842 ACT domain RIMD111065_12530 PF00696 Amino acid kinase family RIMD111065_12530 PF13840 ACT domain RIMD111065_12540 PF08544 GHMP kinases C terminal RIMD111065_12540 PF00288 GHMP kinases N terminal domain RIMD111065_12550 PF14821 Threonine synthase N terminus RIMD111065_12550 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_12600 PF01048 Phosphorylase superfamily RIMD111065_12640 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_12640 PF00989 PAS fold RIMD111065_12640 PF00072 Response regulator receiver domain RIMD111065_12640 PF01627 Hpt domain RIMD111065_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_12640 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_12650 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase RIMD111065_12660 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_12660 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_12670 PF02690 Na+/Pi-cotransporter RIMD111065_12690 PF13520 Amino acid permease RIMD111065_12710 PF00324 Amino acid permease RIMD111065_12730 PF00202 Aminotransferase class-III RIMD111065_12740 PF00171 Aldehyde dehydrogenase family RIMD111065_12750 PF01381 Helix-turn-helix RIMD111065_12750 PF07883 Cupin domain RIMD111065_12760 PF01266 FAD dependent oxidoreductase RIMD111065_12790 PF05656 Protein of unknown function (DUF805) RIMD111065_12820 PF00816 H-NS histone family RIMD111065_12830 PF00793 DAHP synthetase I family RIMD111065_12840 PF08021 Siderophore-interacting FAD-binding domain RIMD111065_12840 PF04954 Siderophore-interacting protein RIMD111065_12850 PF02321 Outer membrane efflux protein RIMD111065_12860 PF02687 FtsX-like permease family RIMD111065_12860 PF12704 MacB-like periplasmic core domain RIMD111065_12860 PF00005 ABC transporter RIMD111065_12870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_12890 PF02833 DHHA2 domain RIMD111065_12890 PF01368 DHH family RIMD111065_12900 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_12910 PF01513 ATP-NAD kinase RIMD111065_12920 PF01025 GrpE RIMD111065_12930 PF00012 Hsp70 protein RIMD111065_12940 PF01556 DnaJ C terminal domain RIMD111065_12940 PF00684 DnaJ central domain RIMD111065_12940 PF00226 DnaJ domain RIMD111065_12950 PF02264 LamB porin RIMD111065_12950 PF11471 Maltoporin periplasmic N-terminal extension RIMD111065_12960 PF00294 pfkB family carbohydrate kinase RIMD111065_12970 PF00367 phosphotransferase system, EIIB RIMD111065_12970 PF02378 Phosphotransferase system, EIIC RIMD111065_12980 PF00251 Glycosyl hydrolases family 32 N-terminal domain RIMD111065_12980 PF08244 Glycosyl hydrolases family 32 C terminal RIMD111065_12990 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_12990 PF13407 Periplasmic binding protein domain RIMD111065_13000 PF02308 MgtC family RIMD111065_13040 PF01022 Bacterial regulatory protein, arsR family RIMD111065_13050 PF04143 Sulphur transport RIMD111065_13080 PF00873 AcrB/AcrD/AcrF family RIMD111065_13090 PF00563 EAL domain RIMD111065_13090 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_13090 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_13100 PF10437 Bacterial lipoate protein ligase C-terminus RIMD111065_13100 PF03099 Biotin/lipoate A/B protein ligase family RIMD111065_13140 PF00873 AcrB/AcrD/AcrF family RIMD111065_13150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_13150 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_13170 PF00873 AcrB/AcrD/AcrF family RIMD111065_13180 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_13190 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_13230 PF07690 Major Facilitator Superfamily RIMD111065_13240 PF02424 ApbE family RIMD111065_13250 PF00127 Copper binding proteins, plastocyanin/azurin family RIMD111065_13280 PF01156 Inosine-uridine preferring nucleoside hydrolase RIMD111065_13300 PF00034 Cytochrome c RIMD111065_13300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_13320 PF06481 COX Aromatic Rich Motif RIMD111065_13320 PF00116 Cytochrome C oxidase subunit II, periplasmic domain RIMD111065_13330 PF00115 Cytochrome C and Quinol oxidase polypeptide I RIMD111065_13340 PF00510 Cytochrome c oxidase subunit III RIMD111065_13350 PF03626 Prokaryotic Cytochrome C oxidase subunit IV RIMD111065_13360 PF01040 UbiA prenyltransferase family RIMD111065_13370 PF07690 Major Facilitator Superfamily RIMD111065_13380 PF00672 HAMP domain RIMD111065_13380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_13380 PF00072 Response regulator receiver domain RIMD111065_13380 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_13380 PF01627 Hpt domain RIMD111065_13390 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_13410 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_13410 PF00072 Response regulator receiver domain RIMD111065_13420 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_13430 PF01568 Molydopterin dinucleotide binding domain RIMD111065_13430 PF00384 Molybdopterin oxidoreductase RIMD111065_13430 PF18364 Molybdopterin oxidoreductase N-terminal domain RIMD111065_13440 PF02613 Nitrate reductase delta subunit RIMD111065_13510 PF04002 RadC-like JAB domain RIMD111065_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_13590 PF03466 LysR substrate binding domain RIMD111065_13620 PF00696 Amino acid kinase family RIMD111065_13630 PF06545 Protein of unknown function (DUF1116) RIMD111065_13640 PF00549 CoA-ligase RIMD111065_13640 PF02629 CoA binding domain RIMD111065_13650 PF00857 Isochorismatase family RIMD111065_13660 PF05930 Prophage CP4-57 regulatory protein (AlpA) RIMD111065_13710 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_13710 PF07670 Nucleoside recognition RIMD111065_13710 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_13840 PF00290 Tryptophan synthase alpha chain RIMD111065_13850 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_13860 PF00218 Indole-3-glycerol phosphate synthase RIMD111065_13860 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase RIMD111065_13870 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_13870 PF00591 Glycosyl transferase family, a/b domain RIMD111065_13880 PF00117 Glutamine amidotransferase class-I RIMD111065_13880 PF00591 Glycosyl transferase family, a/b domain RIMD111065_13880 PF02885 Glycosyl transferase family, helical bundle domain RIMD111065_13890 PF04715 Anthranilate synthase component I, N terminal region RIMD111065_13890 PF00425 chorismate binding enzyme RIMD111065_13900 PF02811 PHP domain RIMD111065_13910 PF01300 Telomere recombination RIMD111065_13920 PF02616 Segregation and condensation protein ScpA RIMD111065_13930 PF04079 Segregation and condensation complex subunit ScpB RIMD111065_13940 PF00849 RNA pseudouridylate synthase RIMD111065_13940 PF01479 S4 domain RIMD111065_13980 PF08361 MAATS-type transcriptional repressor, C-terminal region RIMD111065_13980 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_13990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_13990 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_14000 PF00873 AcrB/AcrD/AcrF family RIMD111065_14010 PF02321 Outer membrane efflux protein RIMD111065_14020 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_14030 PF04321 RmlD substrate binding domain RIMD111065_14040 PF00483 Nucleotidyl transferase RIMD111065_14050 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase RIMD111065_14060 PF00535 Glycosyl transferase family 2 RIMD111065_14080 PF00005 ABC transporter RIMD111065_14090 PF14307 Glycosyltransferase WbsX RIMD111065_14090 PF05045 Rhamnan synthesis protein F RIMD111065_14100 PF00535 Glycosyl transferase family 2 RIMD111065_14110 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_14120 PF01507 Phosphoadenosine phosphosulfate reductase family RIMD111065_14130 PF00009 Elongation factor Tu GTP binding domain RIMD111065_14140 PF02080 TrkA-C domain RIMD111065_14140 PF03600 Citrate transporter RIMD111065_14170 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_14180 PF00953 Glycosyl transferase family 4 RIMD111065_14190 PF02719 Polysaccharide biosynthesis protein RIMD111065_14210 PF00953 Glycosyl transferase family 4 RIMD111065_14220 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_14230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RIMD111065_14230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RIMD111065_14230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RIMD111065_14240 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_14290 PF08485 Polysaccharide biosynthesis protein C-terminal RIMD111065_14290 PF02719 Polysaccharide biosynthesis protein RIMD111065_14300 PF04321 RmlD substrate binding domain RIMD111065_14310 PF02350 UDP-N-acetylglucosamine 2-epimerase RIMD111065_14330 PF02563 Polysaccharide biosynthesis/export protein RIMD111065_14330 PF18412 Outer-membrane lipoprotein Wza C-terminal domain RIMD111065_14330 PF10531 SLBB domain RIMD111065_14340 PF01451 Low molecular weight phosphotyrosine protein phosphatase RIMD111065_14350 PF02706 Chain length determinant protein RIMD111065_14350 PF13807 G-rich domain on putative tyrosine kinase RIMD111065_14350 PF13614 AAA domain RIMD111065_14370 PF11102 Group 4 capsule polysaccharide lipoprotein gfcB, YjbF RIMD111065_14380 PF06251 Capsule biosynthesis GfcC RIMD111065_14390 PF06082 Exopolysaccharide biosynthesis protein YbjH RIMD111065_14410 PF04337 Protein of unknown function, DUF480 RIMD111065_14420 PF04434 SWIM zinc finger RIMD111065_14420 PF00176 SNF2 family N-terminal domain RIMD111065_14420 PF00271 Helicase conserved C-terminal domain RIMD111065_14430 PF05472 DNA replication terminus site-binding protein (Ter protein) RIMD111065_14450 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family RIMD111065_14460 PF00676 Dehydrogenase E1 component RIMD111065_14470 PF02780 Transketolase, C-terminal domain RIMD111065_14470 PF02779 Transketolase, pyrimidine binding domain RIMD111065_14480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_14480 PF00364 Biotin-requiring enzyme RIMD111065_14480 PF02817 e3 binding domain RIMD111065_14490 PF00313 'Cold-shock' DNA-binding domain RIMD111065_14540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_14550 PF00892 EamA-like transporter family RIMD111065_14560 PF08220 DeoR-like helix-turn-helix domain RIMD111065_14560 PF00455 DeoR C terminal sensor domain RIMD111065_14570 PF01228 Glycine radical RIMD111065_14570 PF02901 Pyruvate formate lyase-like RIMD111065_14580 PF04055 Radical SAM superfamily RIMD111065_14590 PF00923 Transaldolase/Fructose-6-phosphate aldolase RIMD111065_14610 PF01966 HD domain RIMD111065_14610 PF11871 Domain of unknown function (DUF3391) RIMD111065_14620 PF01479 S4 domain RIMD111065_14620 PF00849 RNA pseudouridylate synthase RIMD111065_14640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_14650 PF12850 Calcineurin-like phosphoesterase superfamily domain RIMD111065_14680 PF13144 Chaperone for flagella basal body P-ring formation RIMD111065_14690 PF01584 CheW-like domain RIMD111065_14690 PF00072 Response regulator receiver domain RIMD111065_14700 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_14700 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_14710 PF00460 Flagella basal body rod protein RIMD111065_14720 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_14720 PF00460 Flagella basal body rod protein RIMD111065_14740 PF07559 Flagellar basal body protein FlaE RIMD111065_14740 PF00460 Flagella basal body rod protein RIMD111065_14740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_14750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_14750 PF00460 Flagella basal body rod protein RIMD111065_14760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_14760 PF00460 Flagella basal body rod protein RIMD111065_14770 PF02107 Flagellar L-ring protein RIMD111065_14780 PF02119 Flagellar P-ring protein RIMD111065_14790 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase RIMD111065_14790 PF10135 Rod binding protein RIMD111065_14800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal RIMD111065_14800 PF00460 Flagella basal body rod protein RIMD111065_14810 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_14820 PF03448 MgtE intracellular N domain RIMD111065_14820 PF01769 Divalent cation transporter RIMD111065_14820 PF00571 CBS domain RIMD111065_14830 PF02541 Ppx/GppA phosphatase family RIMD111065_14840 PF13090 Polyphosphate kinase C-terminal domain 2 RIMD111065_14840 PF17941 Polyphosphate kinase C-terminal domain 1 RIMD111065_14840 PF13089 Polyphosphate kinase N-terminal domain RIMD111065_14840 PF02503 Polyphosphate kinase middle domain RIMD111065_14850 PF01842 ACT domain RIMD111065_14870 PF06490 Flagellar regulatory protein FleQ RIMD111065_14870 PF00158 Sigma-54 interaction domain RIMD111065_14870 PF02954 Bacterial regulatory protein, Fis family RIMD111065_14880 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_14880 PF13188 PAS domain RIMD111065_14890 PF00072 Response regulator receiver domain RIMD111065_14890 PF02954 Bacterial regulatory protein, Fis family RIMD111065_14890 PF00158 Sigma-54 interaction domain RIMD111065_14900 PF01784 NIF3 (NGG1p interacting factor 3) RIMD111065_14910 PF00551 Formyl transferase RIMD111065_14920 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_14920 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_14950 PF00308 Bacterial dnaA protein RIMD111065_14960 PF00463 Isocitrate lyase family RIMD111065_14970 PF01274 Malate synthase RIMD111065_14990 PF14437 MafB19-like deaminase RIMD111065_15000 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_15010 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_15020 PF00005 ABC transporter RIMD111065_15030 PF01895 PhoU domain RIMD111065_15040 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_15040 PF00571 CBS domain RIMD111065_15040 PF03471 Transporter associated domain RIMD111065_15060 PF00809 Pterin binding enzyme RIMD111065_15060 PF02310 B12 binding domain RIMD111065_15060 PF02607 B12 binding domain RIMD111065_15060 PF02965 Vitamin B12 dependent methionine synthase, activation domain RIMD111065_15060 PF02574 Homocysteine S-methyltransferase RIMD111065_15070 PF13520 Amino acid permease RIMD111065_15080 PF04116 Fatty acid hydroxylase superfamily RIMD111065_15110 PF00005 ABC transporter RIMD111065_15120 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_15130 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_15140 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_15150 PF07690 Major Facilitator Superfamily RIMD111065_15160 PF05231 MASE1 RIMD111065_15160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_15160 PF07730 Histidine kinase RIMD111065_15170 PF00072 Response regulator receiver domain RIMD111065_15170 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_15180 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_15180 PF14760 Rnk N-terminus RIMD111065_15210 PF00245 Alkaline phosphatase RIMD111065_15220 PF00245 Alkaline phosphatase RIMD111065_15230 PF01926 50S ribosome-binding GTPase RIMD111065_15240 PF07690 Major Facilitator Superfamily RIMD111065_15250 PF00850 Histone deacetylase domain RIMD111065_15270 PF13307 Helicase C-terminal domain RIMD111065_15270 PF06733 DEAD_2 RIMD111065_15280 PF13609 Gram-negative porin RIMD111065_15300 PF00155 Aminotransferase class I and II RIMD111065_15310 PF05872 Bacterial protein of unknown function (DUF853) RIMD111065_15340 PF03772 Competence protein RIMD111065_15340 PF00753 Metallo-beta-lactamase superfamily RIMD111065_15350 PF00664 ABC transporter transmembrane region RIMD111065_15350 PF00005 ABC transporter RIMD111065_15360 PF02606 Tetraacyldisaccharide-1-P 4'-kinase RIMD111065_15370 PF03966 Trm112p-like protein RIMD111065_15380 PF02348 Cytidylyltransferase RIMD111065_15390 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_15390 PF00072 Response regulator receiver domain RIMD111065_15400 PF02151 UvrB/uvrC motif RIMD111065_15400 PF08459 UvrC Helix-hairpin-helix N-terminal RIMD111065_15400 PF01541 GIY-YIG catalytic domain RIMD111065_15410 PF01066 CDP-alcohol phosphatidyltransferase RIMD111065_15420 PF13426 PAS domain RIMD111065_15420 PF08447 PAS fold RIMD111065_15420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_15430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_15430 PF00672 HAMP domain RIMD111065_15440 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB RIMD111065_15450 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RIMD111065_15490 PF13247 4Fe-4S dicluster domain RIMD111065_15490 PF00037 4Fe-4S binding domain RIMD111065_15500 PF03916 Polysulphide reductase, NrfD RIMD111065_15510 PF00149 Calcineurin-like phosphoesterase RIMD111065_15530 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RIMD111065_15540 PF09190 DALR domain RIMD111065_15540 PF01406 tRNA synthetases class I (C) catalytic domain RIMD111065_15570 PF13185 GAF domain RIMD111065_15570 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_15630 PF01169 Uncharacterized protein family UPF0016 RIMD111065_15640 PF01253 Translation initiation factor SUI1 RIMD111065_15660 PF07670 Nucleoside recognition RIMD111065_15660 PF07664 Ferrous iron transport protein B C terminus RIMD111065_15660 PF02421 Ferrous iron transport protein B RIMD111065_15690 PF00483 Nucleotidyl transferase RIMD111065_15700 PF00437 Type II/IV secretion system protein RIMD111065_15720 PF00989 PAS fold RIMD111065_15720 PF01627 Hpt domain RIMD111065_15720 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_15720 PF00072 Response regulator receiver domain RIMD111065_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_15720 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_15730 PF01032 FecCD transport family RIMD111065_15740 PF00005 ABC transporter RIMD111065_15750 PF00583 Acetyltransferase (GNAT) family RIMD111065_15760 PF00793 DAHP synthetase I family RIMD111065_15770 PF01219 Prokaryotic diacylglycerol kinase RIMD111065_15780 PF01842 ACT domain RIMD111065_15780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_15780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_15790 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) RIMD111065_15800 PF01812 5-formyltetrahydrofolate cyclo-ligase family RIMD111065_15820 PF05173 Dihydrodipicolinate reductase, C-terminus RIMD111065_15820 PF01113 Dihydrodipicolinate reductase, N-terminus RIMD111065_15830 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain RIMD111065_15830 PF00117 Glutamine amidotransferase class-I RIMD111065_15840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_15840 PF02142 MGS-like domain RIMD111065_15840 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain RIMD111065_15850 PF00682 HMGL-like RIMD111065_15850 PF08502 LeuA allosteric (dimerisation) domain RIMD111065_15860 PF07759 Protein of unknown function (DUF1615) RIMD111065_15930 PF13302 Acetyltransferase (GNAT) domain RIMD111065_15940 PF00270 DEAD/DEAH box helicase RIMD111065_15940 PF00271 Helicase conserved C-terminal domain RIMD111065_15960 PF14521 Lysine-specific metallo-endopeptidase RIMD111065_15990 PF09278 MerR, DNA binding RIMD111065_15990 PF00376 MerR family regulatory protein RIMD111065_16020 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_16030 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_16040 PF00005 ABC transporter RIMD111065_16050 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_16050 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_16060 PF04898 Glutamate synthase central domain RIMD111065_16060 PF01645 Conserved region in glutamate synthase RIMD111065_16060 PF01493 GXGXG motif RIMD111065_16060 PF00310 Glutamine amidotransferases class-II RIMD111065_16070 PF16199 Radical_SAM C-terminal domain RIMD111065_16070 PF04055 Radical SAM superfamily RIMD111065_16080 PF00005 ABC transporter RIMD111065_16080 PF03412 Peptidase C39 family RIMD111065_16080 PF00664 ABC transporter transmembrane region RIMD111065_16180 PF00324 Amino acid permease RIMD111065_16200 PF03618 Kinase/pyrophosphorylase RIMD111065_16210 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_16210 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_16210 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain RIMD111065_16230 PF01915 Glycosyl hydrolase family 3 C-terminal domain RIMD111065_16230 PF14310 Fibronectin type III-like domain RIMD111065_16230 PF00933 Glycosyl hydrolase family 3 N terminal domain RIMD111065_16250 PF01483 Proprotein convertase P-domain RIMD111065_16250 PF00082 Subtilase family RIMD111065_16270 PF03180 NLPA lipoprotein RIMD111065_16280 PF01569 PAP2 superfamily RIMD111065_16300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain RIMD111065_16300 PF11890 Domain of unknown function (DUF3410) RIMD111065_16300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain RIMD111065_16310 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_16310 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_16330 PF01416 tRNA pseudouridine synthase RIMD111065_16340 PF17848 Acetyl-coA carboxylase zinc finger domain RIMD111065_16340 PF01039 Carboxyl transferase domain RIMD111065_16350 PF02875 Mur ligase family, glutamate ligase domain RIMD111065_16350 PF08245 Mur ligase middle domain RIMD111065_16360 PF05036 Sporulation related domain RIMD111065_16370 PF04358 DsrC like protein RIMD111065_16380 PF12805 FUSC-like inner membrane protein yccS RIMD111065_16390 PF01027 Inhibitor of apoptosis-promoting Bax1 RIMD111065_16430 PF08019 Phosphoethanolamine transferase EptA/EptB RIMD111065_16430 PF00884 Sulfatase RIMD111065_16440 PF09924 Uncharacterised conserved protein (DUF2156) RIMD111065_16440 PF03706 Lysylphosphatidylglycerol synthase TM region RIMD111065_16460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_16460 PF08447 PAS fold RIMD111065_16470 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_16470 PF13426 PAS domain RIMD111065_16470 PF00563 EAL domain RIMD111065_16480 PF00849 RNA pseudouridylate synthase RIMD111065_16500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_16510 PF04209 homogentisate 1,2-dioxygenase RIMD111065_16530 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_16530 PF14497 Glutathione S-transferase, C-terminal domain RIMD111065_16540 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_16540 PF13417 Glutathione S-transferase, N-terminal domain RIMD111065_16560 PF13537 Glutamine amidotransferase domain RIMD111065_16560 PF00733 Asparagine synthase RIMD111065_16580 PF02254 TrkA-N domain RIMD111065_16580 PF00999 Sodium/hydrogen exchanger family RIMD111065_16590 PF13344 Haloacid dehalogenase-like hydrolase RIMD111065_16600 PF00962 Adenosine/AMP deaminase RIMD111065_16610 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_16620 PF03741 Integral membrane protein TerC family RIMD111065_16620 PF03471 Transporter associated domain RIMD111065_16640 PF01565 FAD binding domain RIMD111065_16640 PF02913 FAD linked oxidases, C-terminal domain RIMD111065_16640 PF13183 4Fe-4S dicluster domain RIMD111065_16660 PF03061 Thioesterase superfamily RIMD111065_16670 PF03880 DbpA RNA binding domain RIMD111065_16670 PF00270 DEAD/DEAH box helicase RIMD111065_16670 PF00271 Helicase conserved C-terminal domain RIMD111065_16680 PF13726 Na+-H+ antiporter family RIMD111065_16680 PF03553 Na+/H+ antiporter family RIMD111065_16690 PF00929 Exonuclease RIMD111065_16700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_16700 PF00672 HAMP domain RIMD111065_16700 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_16710 PF00691 OmpA family RIMD111065_16710 PF18393 MotY N-terminal domain RIMD111065_16720 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_16730 PF00633 Helix-hairpin-helix motif RIMD111065_16730 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_16730 PF10576 Iron-sulfur binding domain of endonuclease III RIMD111065_16740 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_16750 PF04205 FMN-binding domain RIMD111065_16760 PF03116 NQR2, RnfD, RnfE family RIMD111065_16770 PF10531 SLBB domain RIMD111065_16770 PF13375 RnfC Barrel sandwich hybrid domain RIMD111065_16770 PF12838 4Fe-4S dicluster domain RIMD111065_16770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RIMD111065_16780 PF04060 Putative Fe-S cluster RIMD111065_16790 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_16800 PF00892 EamA-like transporter family RIMD111065_16820 PF13426 PAS domain RIMD111065_16820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_16820 PF08447 PAS fold RIMD111065_16830 PF07055 Enoyl reductase FAD binding domain RIMD111065_16830 PF12241 Trans-2-enoyl-CoA reductase catalytic region RIMD111065_16830 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase RIMD111065_16840 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_16850 PF00155 Aminotransferase class I and II RIMD111065_16870 PF00462 Glutaredoxin RIMD111065_16880 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family RIMD111065_16890 PF04851 Type III restriction enzyme, res subunit RIMD111065_16890 PF00271 Helicase conserved C-terminal domain RIMD111065_16900 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_16900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_16910 PF11742 Protein of unknown function (DUF3302) RIMD111065_16920 PF02554 Carbon starvation protein CstA RIMD111065_16930 PF04397 LytTr DNA-binding domain RIMD111065_16930 PF00072 Response regulator receiver domain RIMD111065_16940 PF06580 Histidine kinase RIMD111065_16940 PF07694 5TMR of 5TMR-LYT RIMD111065_16950 PF01966 HD domain RIMD111065_16960 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_16960 PF00171 Aldehyde dehydrogenase family RIMD111065_16980 PF01914 MarC family integral membrane protein RIMD111065_16990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_17000 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_17010 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_17010 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_17020 PF00005 ABC transporter RIMD111065_17020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_17030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_17030 PF00005 ABC transporter RIMD111065_17040 PF03741 Integral membrane protein TerC family RIMD111065_17050 PF00842 Alanine racemase, C-terminal domain RIMD111065_17050 PF01168 Alanine racemase, N-terminal domain RIMD111065_17070 PF00375 Sodium:dicarboxylate symporter family RIMD111065_17090 PF01979 Amidohydrolase family RIMD111065_17110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_17110 PF00672 HAMP domain RIMD111065_17120 PF01230 HIT domain RIMD111065_17190 PF13721 SecD export protein N-terminal TM region RIMD111065_17190 PF02355 Protein export membrane protein RIMD111065_17190 PF07549 SecD/SecF GG Motif RIMD111065_17200 PF02355 Protein export membrane protein RIMD111065_17200 PF07549 SecD/SecF GG Motif RIMD111065_17220 PF05661 Protein of unknown function (DUF808) RIMD111065_17230 PF01432 Peptidase family M3 RIMD111065_17230 PF08439 Oligopeptidase F RIMD111065_17240 PF01432 Peptidase family M3 RIMD111065_17240 PF08439 Oligopeptidase F RIMD111065_17250 PF00860 Permease family RIMD111065_17260 PF05728 Uncharacterised protein family (UPF0227) RIMD111065_17270 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_17310 PF01906 Putative heavy-metal-binding RIMD111065_17330 PF14824 Sirohaem biosynthesis protein central RIMD111065_17330 PF10414 Sirohaem synthase dimerisation region RIMD111065_17330 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases RIMD111065_17340 PF13187 4Fe-4S dicluster domain RIMD111065_17340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain RIMD111065_17340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain RIMD111065_17350 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B RIMD111065_17350 PF00175 Oxidoreductase NAD-binding domain RIMD111065_17360 PF17179 4Fe-4S dicluster domain RIMD111065_17370 PF01734 Patatin-like phospholipase RIMD111065_17380 PF17676 LD-carboxypeptidase C-terminal domain RIMD111065_17380 PF02016 LD-carboxypeptidase N-terminal domain RIMD111065_17390 PF00884 Sulfatase RIMD111065_17410 PF00696 Amino acid kinase family RIMD111065_17410 PF01842 ACT domain RIMD111065_17420 PF00696 Amino acid kinase family RIMD111065_17420 PF00583 Acetyltransferase (GNAT) family RIMD111065_17430 PF01625 Peptide methionine sulfoxide reductase RIMD111065_17470 PF00561 alpha/beta hydrolase fold RIMD111065_17480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_17500 PF03466 LysR substrate binding domain RIMD111065_17500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_17510 PF02652 L-lactate permease RIMD111065_17520 PF02754 Cysteine-rich domain RIMD111065_17530 PF02589 LUD domain RIMD111065_17530 PF13183 4Fe-4S dicluster domain RIMD111065_17530 PF11870 Domain of unknown function (DUF3390) RIMD111065_17540 PF02589 LUD domain RIMD111065_17550 PF02913 FAD linked oxidases, C-terminal domain RIMD111065_17550 PF01565 FAD binding domain RIMD111065_17600 PF12704 MacB-like periplasmic core domain RIMD111065_17600 PF02687 FtsX-like permease family RIMD111065_17610 PF00005 ABC transporter RIMD111065_17630 PF07690 Major Facilitator Superfamily RIMD111065_17660 PF01593 Flavin containing amine oxidoreductase RIMD111065_17670 PF03239 Iron permease FTR1 family RIMD111065_17700 PF03350 Uncharacterized protein family, UPF0114 RIMD111065_17710 PF01740 STAS domain RIMD111065_17710 PF00916 Sulfate permease family RIMD111065_17740 PF00842 Alanine racemase, C-terminal domain RIMD111065_17740 PF01168 Alanine racemase, N-terminal domain RIMD111065_17750 PF00672 HAMP domain RIMD111065_17750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_17750 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_17760 PF00563 EAL domain RIMD111065_17760 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_17760 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_17770 PF01339 CheB methylesterase RIMD111065_17770 PF00072 Response regulator receiver domain RIMD111065_17780 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_17780 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_17790 PF01584 CheW-like domain RIMD111065_17800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_17800 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_17800 PF00672 HAMP domain RIMD111065_17810 PF01627 Hpt domain RIMD111065_17810 PF09078 CheY binding RIMD111065_17810 PF01584 CheW-like domain RIMD111065_17810 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_17830 PF00072 Response regulator receiver domain RIMD111065_17840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_17840 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal RIMD111065_17850 PF13247 4Fe-4S dicluster domain RIMD111065_17860 PF03916 Polysulphide reductase, NrfD RIMD111065_17870 PF00374 Nickel-dependent hydrogenase RIMD111065_17880 PF01750 Hydrogenase maturation protease RIMD111065_17890 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE RIMD111065_17900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_17910 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_17920 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_17920 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_17930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_17930 PF00005 ABC transporter RIMD111065_17940 PF00005 ABC transporter RIMD111065_17940 PF08402 TOBE domain RIMD111065_17950 PF02492 CobW/HypB/UreG, nucleotide-binding domain RIMD111065_17970 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA RIMD111065_17980 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_17980 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_17990 PF01924 Hydrogenase formation hypA family RIMD111065_18000 PF01455 HupF/HypC family RIMD111065_18010 PF00708 Acylphosphatase RIMD111065_18010 PF17788 HypF Kae1-like domain RIMD111065_18010 PF01300 Telomere recombination RIMD111065_18010 PF07503 HypF finger RIMD111065_18020 PF00009 Elongation factor Tu GTP binding domain RIMD111065_18020 PF09105 Elongation factor SelB, winged helix RIMD111065_18020 PF09106 Elongation factor SelB, winged helix RIMD111065_18020 PF03144 Elongation factor Tu domain 2 RIMD111065_18020 PF09107 Elongation factor SelB, winged helix RIMD111065_18030 PF12390 Selenocysteine synthase N terminal RIMD111065_18030 PF03841 L-seryl-tRNA selenium transferase RIMD111065_18040 PF01750 Hydrogenase maturation protease RIMD111065_18050 PF07450 Formate hydrogenlyase maturation protein HycH RIMD111065_18060 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_18070 PF12838 4Fe-4S dicluster domain RIMD111065_18080 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RIMD111065_18080 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RIMD111065_18080 PF00374 Nickel-dependent hydrogenase RIMD111065_18090 PF00146 NADH dehydrogenase RIMD111065_18100 PF00361 Proton-conducting membrane transporter RIMD111065_18110 PF12798 4Fe-4S binding domain RIMD111065_18110 PF00037 4Fe-4S binding domain RIMD111065_18120 PF02705 K+ potassium transporter RIMD111065_18140 PF13247 4Fe-4S dicluster domain RIMD111065_18140 PF12800 4Fe-4S binding domain RIMD111065_18170 PF02954 Bacterial regulatory protein, Fis family RIMD111065_18170 PF00158 Sigma-54 interaction domain RIMD111065_18170 PF01590 GAF domain RIMD111065_18180 PF02634 FdhD/NarQ family RIMD111065_18190 PF13662 Toprim domain RIMD111065_18190 PF02132 RecR protein RIMD111065_18200 PF00183 Hsp90 protein RIMD111065_18200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_18210 PF05191 Adenylate kinase, active site lid RIMD111065_18220 PF00762 Ferrochelatase RIMD111065_18240 PF00294 pfkB family carbohydrate kinase RIMD111065_18270 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_18270 PF00563 EAL domain RIMD111065_18270 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_18280 PF00483 Nucleotidyl transferase RIMD111065_18300 PF07273 Protein of unknown function (DUF1439) RIMD111065_18320 PF00425 chorismate binding enzyme RIMD111065_18330 PF00501 AMP-binding enzyme RIMD111065_18330 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_18340 PF00550 Phosphopantetheine attachment site RIMD111065_18340 PF00857 Isochorismatase family RIMD111065_18350 PF00975 Thioesterase domain RIMD111065_18350 PF00550 Phosphopantetheine attachment site RIMD111065_18350 PF00668 Condensation domain RIMD111065_18350 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_18350 PF00501 AMP-binding enzyme RIMD111065_18370 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_18370 PF00501 AMP-binding enzyme RIMD111065_18370 PF00550 Phosphopantetheine attachment site RIMD111065_18370 PF00668 Condensation domain RIMD111065_18370 PF07993 Male sterility protein RIMD111065_18380 PF00501 AMP-binding enzyme RIMD111065_18380 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_18380 PF00668 Condensation domain RIMD111065_18380 PF00550 Phosphopantetheine attachment site RIMD111065_18380 PF00975 Thioesterase domain RIMD111065_18390 PF01497 Periplasmic binding protein RIMD111065_18400 PF17837 4'-phosphopantetheinyl transferase N-terminal domain RIMD111065_18400 PF01648 4'-phosphopantetheinyl transferase superfamily RIMD111065_18410 PF00005 ABC transporter RIMD111065_18420 PF01032 FecCD transport family RIMD111065_18430 PF01032 FecCD transport family RIMD111065_18440 PF00593 TonB dependent receptor RIMD111065_18440 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_18470 PF11143 Protein of unknown function (DUF2919) RIMD111065_18480 PF01544 CorA-like Mg2+ transporter protein RIMD111065_18500 PF01012 Electron transfer flavoprotein domain RIMD111065_18510 PF00766 Electron transfer flavoprotein FAD-binding domain RIMD111065_18510 PF01012 Electron transfer flavoprotein domain RIMD111065_18520 PF00266 Aminotransferase class-V RIMD111065_18530 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) RIMD111065_18540 PF00793 DAHP synthetase I family RIMD111065_18550 PF00672 HAMP domain RIMD111065_18550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_18560 PF04055 Radical SAM superfamily RIMD111065_18570 PF13742 OB-fold nucleic acid binding domain RIMD111065_18570 PF02601 Exonuclease VII, large subunit RIMD111065_18580 PF00892 EamA-like transporter family RIMD111065_18590 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_18600 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_18620 PF00884 Sulfatase RIMD111065_18630 PF04055 Radical SAM superfamily RIMD111065_18630 PF13186 Iron-sulfur cluster-binding domain RIMD111065_18650 PF02705 K+ potassium transporter RIMD111065_18660 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_18660 PF00571 CBS domain RIMD111065_18670 PF02540 NAD synthase RIMD111065_18670 PF00117 Glutamine amidotransferase class-I RIMD111065_18670 PF00958 GMP synthase C terminal domain RIMD111065_18710 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_18710 PF02805 Metal binding domain of Ada RIMD111065_18710 PF12833 Helix-turn-helix domain RIMD111065_18710 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_18740 PF05724 Thiopurine S-methyltransferase (TPMT) RIMD111065_18750 PF00675 Insulinase (Peptidase family M16) RIMD111065_18750 PF05193 Peptidase M16 inactive domain RIMD111065_18760 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_18780 PF00892 EamA-like transporter family RIMD111065_18790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_18800 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain RIMD111065_18810 PF02559 CarD-like/TRCF domain RIMD111065_18810 PF03461 TRCF domain RIMD111065_18810 PF17757 UvrB interaction domain RIMD111065_18810 PF00271 Helicase conserved C-terminal domain RIMD111065_18810 PF00270 DEAD/DEAH box helicase RIMD111065_18830 PF12704 MacB-like periplasmic core domain RIMD111065_18830 PF02687 FtsX-like permease family RIMD111065_18840 PF00005 ABC transporter RIMD111065_18850 PF12704 MacB-like periplasmic core domain RIMD111065_18850 PF02687 FtsX-like permease family RIMD111065_18880 PF05697 Bacterial trigger factor protein (TF) RIMD111065_18880 PF05698 Bacterial trigger factor protein (TF) C-terminus RIMD111065_18880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_18890 PF00574 Clp protease RIMD111065_18900 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_18900 PF06689 ClpX C4-type zinc finger RIMD111065_18900 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_18910 PF05362 Lon protease (S16) C-terminal proteolytic domain RIMD111065_18910 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_18910 PF02190 ATP-dependent protease La (LON) substrate-binding domain RIMD111065_18920 PF00216 Bacterial DNA-binding protein RIMD111065_18930 PF13145 PPIC-type PPIASE domain RIMD111065_18940 PF12848 ABC transporter RIMD111065_18940 PF00005 ABC transporter RIMD111065_18950 PF00474 Sodium:solute symporter family RIMD111065_18960 PF04341 Protein of unknown function, DUF485 RIMD111065_18990 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_19050 PF01235 Sodium:alanine symporter family RIMD111065_19070 PF06167 Glucose-regulated metallo-peptidase M90 RIMD111065_19080 PF01184 GPR1/FUN34/yaaH family RIMD111065_19110 PF00376 MerR family regulatory protein RIMD111065_19110 PF09278 MerR, DNA binding RIMD111065_19120 PF00682 HMGL-like RIMD111065_19130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain RIMD111065_19130 PF00364 Biotin-requiring enzyme RIMD111065_19130 PF00289 Biotin carboxylase, N-terminal domain RIMD111065_19130 PF02785 Biotin carboxylase C-terminal domain RIMD111065_19140 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_19150 PF01039 Carboxyl transferase domain RIMD111065_19160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_19160 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_19160 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_19170 PF00171 Aldehyde dehydrogenase family RIMD111065_19180 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_19180 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_19180 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_19190 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_19200 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_19210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RIMD111065_19210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RIMD111065_19230 PF13520 Amino acid permease RIMD111065_19240 PF01925 Sulfite exporter TauE/SafE RIMD111065_19430 PF00989 PAS fold RIMD111065_19430 PF00563 EAL domain RIMD111065_19430 PF01590 GAF domain RIMD111065_19430 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_19440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_19440 PF03466 LysR substrate binding domain RIMD111065_19450 PF00232 Glycosyl hydrolase family 1 RIMD111065_19460 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_19460 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_19460 PF13188 PAS domain RIMD111065_19460 PF00563 EAL domain RIMD111065_19480 PF01966 HD domain RIMD111065_19500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_19500 PF03466 LysR substrate binding domain RIMD111065_19510 PF01261 Xylose isomerase-like TIM barrel RIMD111065_19520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RIMD111065_19520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RIMD111065_19530 PF03466 LysR substrate binding domain RIMD111065_19530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_19550 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_19560 PF03279 Bacterial lipid A biosynthesis acyltransferase RIMD111065_19590 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_19590 PF17151 Periplasmic sensor domain RIMD111065_19610 PF03104 DNA polymerase family B, exonuclease domain RIMD111065_19610 PF00136 DNA polymerase family B RIMD111065_19620 PF01554 MatE RIMD111065_19630 PF06786 Uncharacterised protein family (UPF0253) RIMD111065_19640 PF00677 Lumazine binding domain RIMD111065_19660 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_19670 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_19670 PF02222 ATP-grasp domain RIMD111065_19680 PF00892 EamA-like transporter family RIMD111065_19700 PF02525 Flavodoxin-like fold RIMD111065_19750 PF17783 CvfB-like winged helix domain RIMD111065_19750 PF13509 S1 domain RIMD111065_19770 PF04269 Protein of unknown function, DUF440 RIMD111065_19780 PF00912 Transglycosylase RIMD111065_19790 PF04269 Protein of unknown function, DUF440 RIMD111065_19800 PF03776 Septum formation topological specificity factor MinE RIMD111065_19810 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain RIMD111065_19820 PF03775 Septum formation inhibitor MinC, C-terminal domain RIMD111065_19820 PF05209 Septum formation inhibitor MinC, N-terminal domain RIMD111065_19830 PF05166 YcgL domain RIMD111065_19840 PF13406 Transglycosylase SLT domain RIMD111065_19850 PF03313 Serine dehydratase alpha chain RIMD111065_19850 PF03315 Serine dehydratase beta chain RIMD111065_19860 PF03313 Serine dehydratase alpha chain RIMD111065_19860 PF03315 Serine dehydratase beta chain RIMD111065_19870 PF06865 Pyrimidine/purine nucleoside phosphorylase RIMD111065_19880 PF00375 Sodium:dicarboxylate symporter family RIMD111065_19890 PF00376 MerR family regulatory protein RIMD111065_19890 PF09278 MerR, DNA binding RIMD111065_19900 PF02803 Thiolase, C-terminal domain RIMD111065_19900 PF00108 Thiolase, N-terminal domain RIMD111065_19910 PF08668 HDOD domain RIMD111065_19910 PF00563 EAL domain RIMD111065_19920 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RIMD111065_19930 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) RIMD111065_19950 PF04542 Sigma-70 region 2 RIMD111065_19950 PF08281 Sigma-70, region 4 RIMD111065_20000 PF01882 Protein of unknown function DUF58 RIMD111065_20010 PF17863 AAA lid domain RIMD111065_20010 PF07726 ATPase family associated with various cellular activities (AAA) RIMD111065_20020 PF00108 Thiolase, N-terminal domain RIMD111065_20020 PF02803 Thiolase, C-terminal domain RIMD111065_20030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RIMD111065_20030 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_20030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RIMD111065_20050 PF07152 YaeQ protein RIMD111065_20100 PF02954 Bacterial regulatory protein, Fis family RIMD111065_20100 PF00158 Sigma-54 interaction domain RIMD111065_20100 PF13188 PAS domain RIMD111065_20110 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_20110 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_20120 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_20130 PF01546 Peptidase family M20/M25/M40 RIMD111065_20130 PF07687 Peptidase dimerisation domain RIMD111065_20140 PF01979 Amidohydrolase family RIMD111065_20150 PF00696 Amino acid kinase family RIMD111065_20160 PF00892 EamA-like transporter family RIMD111065_20170 PF02625 XdhC and CoxI family RIMD111065_20170 PF13478 XdhC Rossmann domain RIMD111065_20190 PF12804 MobA-like NTP transferase domain RIMD111065_20200 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_20200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_20210 PF01979 Amidohydrolase family RIMD111065_20220 PF00941 FAD binding domain in molybdopterin dehydrogenase RIMD111065_20230 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RIMD111065_20230 PF01799 [2Fe-2S] binding domain RIMD111065_20230 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RIMD111065_20240 PF00860 Permease family RIMD111065_20250 PF01979 Amidohydrolase family RIMD111065_20260 PF00860 Permease family RIMD111065_20270 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain RIMD111065_20270 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase RIMD111065_20280 PF03450 CO dehydrogenase flavoprotein C-terminal domain RIMD111065_20280 PF00941 FAD binding domain in molybdopterin dehydrogenase RIMD111065_20290 PF01799 [2Fe-2S] binding domain RIMD111065_20290 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_20310 PF05433 Glycine zipper 2TM domain RIMD111065_20340 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_20350 PF00501 AMP-binding enzyme RIMD111065_20350 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_20360 PF01502 Phosphoribosyl-AMP cyclohydrolase RIMD111065_20360 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase RIMD111065_20370 PF00977 Histidine biosynthesis protein RIMD111065_20380 PF01627 Hpt domain RIMD111065_20380 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_20380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_20380 PF00072 Response regulator receiver domain RIMD111065_20390 PF08448 PAS fold RIMD111065_20390 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_20400 PF00072 Response regulator receiver domain RIMD111065_20410 PF00977 Histidine biosynthesis protein RIMD111065_20420 PF00117 Glutamine amidotransferase class-I RIMD111065_20430 PF08645 Polynucleotide kinase 3 phosphatase RIMD111065_20430 PF00475 Imidazoleglycerol-phosphate dehydratase RIMD111065_20440 PF00155 Aminotransferase class I and II RIMD111065_20450 PF00815 Histidinol dehydrogenase RIMD111065_20460 PF08029 HisG, C-terminal domain RIMD111065_20460 PF01634 ATP phosphoribosyltransferase RIMD111065_20480 PF13307 Helicase C-terminal domain RIMD111065_20480 PF04851 Type III restriction enzyme, res subunit RIMD111065_20490 PF00814 Glycoprotease family RIMD111065_20510 PF12697 Alpha/beta hydrolase family RIMD111065_20510 PF08241 Methyltransferase domain RIMD111065_20520 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_20520 PF00501 AMP-binding enzyme RIMD111065_20530 PF00570 HRDC domain RIMD111065_20530 PF01612 3'-5' exonuclease RIMD111065_20540 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_20560 PF01207 Dihydrouridine synthase (Dus) RIMD111065_20570 PF04304 Protein of unknown function (DUF454) RIMD111065_20580 PF00156 Phosphoribosyl transferase domain RIMD111065_20590 PF12170 DNA polymerase III tau subunit V interacting with alpha RIMD111065_20590 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding RIMD111065_20590 PF12169 DNA polymerase III subunits gamma and tau domain III RIMD111065_20600 PF02575 YbaB/EbfC DNA-binding family RIMD111065_20610 PF00589 Phage integrase family RIMD111065_20610 PF12167 Arm DNA-binding domain RIMD111065_20700 PF09588 YqaJ-like viral recombinase domain RIMD111065_20920 PF13391 HNH endonuclease RIMD111065_20950 PF05772 NinB protein RIMD111065_21010 PF00817 impB/mucB/samB family RIMD111065_21010 PF13438 Domain of unknown function (DUF4113) RIMD111065_21010 PF11799 impB/mucB/samB family C-terminal domain RIMD111065_21280 PF00072 Response regulator receiver domain RIMD111065_21280 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_21290 PF02272 DHHA1 domain RIMD111065_21290 PF01368 DHH family RIMD111065_21290 PF00571 CBS domain RIMD111065_21290 PF01743 Poly A polymerase head domain RIMD111065_21300 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold RIMD111065_21300 PF00270 DEAD/DEAH box helicase RIMD111065_21300 PF04408 Helicase associated domain (HA2) RIMD111065_21300 PF11898 Domain of unknown function (DUF3418) RIMD111065_21300 PF00271 Helicase conserved C-terminal domain RIMD111065_21320 PF01386 Ribosomal L25p family RIMD111065_21330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_21330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_21330 PF00672 HAMP domain RIMD111065_21330 PF00072 Response regulator receiver domain RIMD111065_21330 PF01627 Hpt domain RIMD111065_21330 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_21340 PF00072 Response regulator receiver domain RIMD111065_21350 PF00753 Metallo-beta-lactamase superfamily RIMD111065_21370 PF00586 AIR synthase related protein, N-terminal domain RIMD111065_21370 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_21410 PF10672 S-adenosylmethionine-dependent methyltransferase RIMD111065_21410 PF17785 PUA-like domain RIMD111065_21420 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_21420 PF07196 Flagellin hook IN motif RIMD111065_21420 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_21430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_21430 PF00672 HAMP domain RIMD111065_21430 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_21440 PF00708 Acylphosphatase RIMD111065_21450 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_21450 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_21460 PF01588 Putative tRNA binding domain RIMD111065_21460 PF09334 tRNA synthetases class I (M) RIMD111065_21460 PF08264 Anticodon-binding domain of tRNA RIMD111065_21470 PF10609 NUBPL iron-transfer P-loop NTPase RIMD111065_21480 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_21490 PF00692 dUTPase RIMD111065_21500 PF01384 Phosphate transporter family RIMD111065_21510 PF00575 S1 RNA binding domain RIMD111065_21510 PF10150 Ribonuclease E/G family RIMD111065_21510 PF12111 Polyribonucleotide phosphorylase C terminal RIMD111065_21520 PF00849 RNA pseudouridylate synthase RIMD111065_21520 PF01479 S4 domain RIMD111065_21530 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_21540 PF02545 Maf-like protein RIMD111065_21550 PF07690 Major Facilitator Superfamily RIMD111065_21560 PF03466 LysR substrate binding domain RIMD111065_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_21580 PF02620 Large ribosomal RNA subunit accumulation protein YceD RIMD111065_21590 PF01783 Ribosomal L32p protein family RIMD111065_21600 PF02504 Fatty acid synthesis protein RIMD111065_21610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_21610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_21620 PF00698 Acyl transferase domain RIMD111065_21640 PF00550 Phosphopantetheine attachment site RIMD111065_21650 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_21650 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_21660 PF01063 Amino-transferase class IV RIMD111065_21670 PF02618 YceG-like family RIMD111065_21680 PF02223 Thymidylate kinase RIMD111065_21690 PF09115 DNA polymerase III, delta subunit, C terminal RIMD111065_21700 PF01026 TatD related DNase RIMD111065_21710 PF00589 Phage integrase family RIMD111065_21730 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF RIMD111065_21730 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF RIMD111065_21730 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_21740 PF02470 MlaD protein RIMD111065_21750 PF04403 Paraquat-inducible protein A RIMD111065_21780 PF00285 Citrate synthase, C-terminal domain RIMD111065_21790 PF03972 MmgE/PrpD family RIMD111065_21820 PF06974 Protein of unknown function (DUF1298) RIMD111065_21820 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain RIMD111065_21870 PF00106 short chain dehydrogenase RIMD111065_21890 PF07130 YebG protein RIMD111065_21910 PF13654 AAA domain RIMD111065_21910 PF05362 Lon protease (S16) C-terminal proteolytic domain RIMD111065_21920 PF07977 FabA-like domain RIMD111065_21930 PF04957 Ribosome modulation factor RIMD111065_21950 PF12848 ABC transporter RIMD111065_21950 PF16326 ABC transporter C-terminal domain RIMD111065_21950 PF00005 ABC transporter RIMD111065_21970 PF01170 Putative RNA methylase family UPF0020 RIMD111065_21970 PF02926 THUMP domain RIMD111065_21970 PF10672 S-adenosylmethionine-dependent methyltransferase RIMD111065_21980 PF07126 Cell-division protein ZapC RIMD111065_21990 PF01180 Dihydroorotate dehydrogenase RIMD111065_22000 PF05088 Bacterial NAD-glutamate dehydrogenase RIMD111065_22020 PF11940 Domain of unknown function (DUF3458) Ig-like fold RIMD111065_22020 PF17432 Domain of unknown function (DUF3458_C) ARM repeats RIMD111065_22020 PF01433 Peptidase family M1 domain RIMD111065_22030 PF17804 Tail specific protease N-terminal domain RIMD111065_22030 PF03572 Peptidase family S41 RIMD111065_22030 PF00595 PDZ domain RIMD111065_22030 PF11818 C-terminal domain of tail specific protease (DUF3340) RIMD111065_22040 PF04352 ProQ/FINO family RIMD111065_22040 PF17516 ProQ C-terminal domain RIMD111065_22050 PF13185 GAF domain RIMD111065_22070 PF00115 Cytochrome C and Quinol oxidase polypeptide I RIMD111065_22100 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP RIMD111065_22100 PF13442 Cytochrome C oxidase, cbb3-type, subunit III RIMD111065_22120 PF00403 Heavy-metal-associated domain RIMD111065_22150 PF13545 Crp-like helix-turn-helix domain RIMD111065_22150 PF00027 Cyclic nucleotide-binding domain RIMD111065_22160 PF00582 Universal stress protein family RIMD111065_22170 PF01171 PP-loop family RIMD111065_22200 PF14497 Glutathione S-transferase, C-terminal domain RIMD111065_22200 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_22210 PF05025 RbsD / FucU transport protein family RIMD111065_22220 PF00005 ABC transporter RIMD111065_22230 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_22240 PF13407 Periplasmic binding protein domain RIMD111065_22250 PF00294 pfkB family carbohydrate kinase RIMD111065_22260 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_22270 PF00563 EAL domain RIMD111065_22270 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_22270 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_22290 PF02146 Sir2 family RIMD111065_22320 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_22320 PF00072 Response regulator receiver domain RIMD111065_22320 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_22320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_22330 PF00216 Bacterial DNA-binding protein RIMD111065_22340 PF03483 B3/4 domain RIMD111065_22340 PF03147 Ferredoxin-fold anticodon binding domain RIMD111065_22340 PF01588 Putative tRNA binding domain RIMD111065_22340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain RIMD111065_22340 PF03484 tRNA synthetase B5 domain RIMD111065_22350 PF01409 tRNA synthetases class II core domain (F) RIMD111065_22350 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain RIMD111065_22360 PF00453 Ribosomal protein L20 RIMD111065_22370 PF01632 Ribosomal protein L35 RIMD111065_22380 PF05198 Translation initiation factor IF-3, N-terminal domain RIMD111065_22380 PF00707 Translation initiation factor IF-3, C-terminal domain RIMD111065_22390 PF03129 Anticodon binding domain RIMD111065_22390 PF02824 TGS domain RIMD111065_22390 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_22390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain RIMD111065_22410 PF04055 Radical SAM superfamily RIMD111065_22420 PF03989 DNA gyrase C-terminal domain, beta-propeller RIMD111065_22420 PF00521 DNA gyrase/topoisomerase IV, subunit A RIMD111065_22440 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_22450 PF03477 ATP cone domain RIMD111065_22450 PF00317 Ribonucleotide reductase, all-alpha domain RIMD111065_22450 PF02867 Ribonucleotide reductase, barrel domain RIMD111065_22460 PF00268 Ribonucleotide reductase, small chain RIMD111065_22470 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_22480 PF06725 3D domain RIMD111065_22480 PF03562 MltA specific insert domain RIMD111065_22490 PF06945 Protein of unknown function (DUF1289) RIMD111065_22510 PF03613 PTS system mannose/fructose/sorbose family IID component RIMD111065_22520 PF03609 PTS system sorbose-specific iic component RIMD111065_22530 PF03830 PTS system sorbose subfamily IIB component RIMD111065_22530 PF03610 PTS system fructose IIA component RIMD111065_22560 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_22560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_22570 PF06560 Glucose-6-phosphate isomerase (GPI) RIMD111065_22580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_22580 PF02378 Phosphotransferase system, EIIC RIMD111065_22590 PF00294 pfkB family carbohydrate kinase RIMD111065_22600 PF00381 PTS HPr component phosphorylation site RIMD111065_22600 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_22610 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_22610 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_22630 PF03222 Tryptophan/tyrosine permease family RIMD111065_22660 PF00270 DEAD/DEAH box helicase RIMD111065_22660 PF00271 Helicase conserved C-terminal domain RIMD111065_22680 PF01264 Chorismate synthase RIMD111065_22690 PF05175 Methyltransferase small domain RIMD111065_22700 PF01713 Smr domain RIMD111065_22720 PF08448 PAS fold RIMD111065_22720 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_22730 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_22760 PF00704 Glycosyl hydrolases family 18 RIMD111065_22760 PF08329 Chitinase A, N-terminal domain RIMD111065_22780 PF08274 PhnA Zinc-Ribbon RIMD111065_22780 PF03831 PhnA domain RIMD111065_22800 PF02567 Phenazine biosynthesis-like protein RIMD111065_22860 PF01327 Polypeptide deformylase RIMD111065_22890 PF03330 Lytic transglycolase RIMD111065_22890 PF05036 Sporulation related domain RIMD111065_22900 PF04310 MukB N-terminal RIMD111065_22900 PF16330 MukB hinge domain RIMD111065_22910 PF04288 MukE-like family RIMD111065_22920 PF17193 MukF C-terminal domain RIMD111065_22920 PF17192 MukF middle domain RIMD111065_22920 PF03882 MukF winged-helix domain RIMD111065_22930 PF13847 Methyltransferase domain RIMD111065_22940 PF02698 DUF218 domain RIMD111065_22950 PF00121 Triosephosphate isomerase RIMD111065_22960 PF00365 Phosphofructokinase RIMD111065_22970 PF07687 Peptidase dimerisation domain RIMD111065_22970 PF01546 Peptidase family M20/M25/M40 RIMD111065_22980 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_22990 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_22990 PF02789 Cytosol aminopeptidase family, N-terminal domain RIMD111065_23000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_23000 PF00128 Alpha amylase, catalytic domain RIMD111065_23020 PF11398 Protein of unknown function (DUF2813) RIMD111065_23030 PF14525 AraC-binding-like domain RIMD111065_23030 PF12833 Helix-turn-helix domain RIMD111065_23050 PF03466 LysR substrate binding domain RIMD111065_23050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_23060 PF01925 Sulfite exporter TauE/SafE RIMD111065_23070 PF03942 DTW domain RIMD111065_23080 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_23080 PF18029 Glyoxalase-like domain RIMD111065_23090 PF01820 D-ala D-ala ligase N-terminus RIMD111065_23090 PF07478 D-ala D-ala ligase C-terminus RIMD111065_23110 PF00255 Glutathione peroxidase RIMD111065_23120 PF00270 DEAD/DEAH box helicase RIMD111065_23120 PF00271 Helicase conserved C-terminal domain RIMD111065_23130 PF13673 Acetyltransferase (GNAT) domain RIMD111065_23160 PF02694 Uncharacterised BCR, YnfA/UPF0060 family RIMD111065_23190 PF01928 CYTH domain RIMD111065_23210 PF00583 Acetyltransferase (GNAT) family RIMD111065_23220 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_23230 PF03992 Antibiotic biosynthesis monooxygenase RIMD111065_23240 PF08543 Phosphomethylpyrimidine kinase RIMD111065_23280 PF00561 alpha/beta hydrolase fold RIMD111065_23280 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus RIMD111065_23290 PF01575 MaoC like domain RIMD111065_23320 PF00005 ABC transporter RIMD111065_23320 PF00664 ABC transporter transmembrane region RIMD111065_23330 PF00005 ABC transporter RIMD111065_23330 PF00664 ABC transporter transmembrane region RIMD111065_23340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_23340 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_23340 PF01627 Hpt domain RIMD111065_23340 PF00672 HAMP domain RIMD111065_23340 PF00072 Response regulator receiver domain RIMD111065_23340 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_23350 PF00085 Thioredoxin RIMD111065_23360 PF00939 Sodium:sulfate symporter transmembrane region RIMD111065_23370 PF00343 Carbohydrate phosphorylase RIMD111065_23410 PF04715 Anthranilate synthase component I, N terminal region RIMD111065_23410 PF00425 chorismate binding enzyme RIMD111065_23420 PF00293 NUDIX domain RIMD111065_23430 PF03222 Tryptophan/tyrosine permease family RIMD111065_23440 PF00375 Sodium:dicarboxylate symporter family RIMD111065_23450 PF00270 DEAD/DEAH box helicase RIMD111065_23450 PF09382 RQC domain RIMD111065_23450 PF00271 Helicase conserved C-terminal domain RIMD111065_23450 PF00570 HRDC domain RIMD111065_23450 PF16124 RecQ zinc-binding RIMD111065_23460 PF08298 PrkA AAA domain RIMD111065_23460 PF06798 PrkA serine protein kinase C-terminal domain RIMD111065_23470 PF04285 Protein of unknown function (DUF444) RIMD111065_23480 PF04293 SpoVR like protein RIMD111065_23490 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_23490 PF07840 FadR C-terminal domain RIMD111065_23500 PF06450 Bacterial Na+/H+ antiporter B (NhaB) RIMD111065_23510 PF02600 Disulfide bond formation protein DsbB RIMD111065_23520 PF09335 SNARE associated Golgi protein RIMD111065_23540 PF17757 UvrB interaction domain RIMD111065_23540 PF12344 Ultra-violet resistance protein B RIMD111065_23540 PF02151 UvrB/uvrC motif RIMD111065_23540 PF04851 Type III restriction enzyme, res subunit RIMD111065_23540 PF00271 Helicase conserved C-terminal domain RIMD111065_23550 PF02080 TrkA-C domain RIMD111065_23550 PF06826 Predicted Permease Membrane Region RIMD111065_23560 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_23560 PF01464 Transglycosylase SLT domain RIMD111065_23600 PF01970 Tripartite tricarboxylate transporter TctA family RIMD111065_23610 PF08279 HTH domain RIMD111065_23610 PF00072 Response regulator receiver domain RIMD111065_23610 PF12431 Transcriptional regulator RIMD111065_23620 PF17203 Single cache domain 3 RIMD111065_23620 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RIMD111065_23620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_23620 PF00989 PAS fold RIMD111065_23630 PF00480 ROK family RIMD111065_23630 PF01047 MarR family RIMD111065_23640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_23640 PF17200 Single Cache domain 2 RIMD111065_23640 PF00672 HAMP domain RIMD111065_23650 PF02810 SEC-C motif RIMD111065_23660 PF04324 BFD-like [2Fe-2S] binding domain RIMD111065_23660 PF01266 FAD dependent oxidoreductase RIMD111065_23670 PF00890 FAD binding domain RIMD111065_23680 PF13183 4Fe-4S dicluster domain RIMD111065_23680 PF02754 Cysteine-rich domain RIMD111065_23710 PF02335 Cytochrome c552 RIMD111065_23720 PF13435 Cytochrome c554 and c-prime RIMD111065_23720 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) RIMD111065_23730 PF13247 4Fe-4S dicluster domain RIMD111065_23730 PF00037 4Fe-4S binding domain RIMD111065_23740 PF03916 Polysulphide reductase, NrfD RIMD111065_23750 PF01578 Cytochrome C assembly protein RIMD111065_23750 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RIMD111065_23760 PF08534 Redoxin RIMD111065_23770 PF03918 Cytochrome C biogenesis protein RIMD111065_23780 PF00293 NUDIX domain RIMD111065_23790 PF00768 D-alanyl-D-alanine carboxypeptidase RIMD111065_23800 PF01212 Beta-eliminating lyase RIMD111065_23810 PF04244 Deoxyribodipyrimidine photo-lyase-related protein RIMD111065_23820 PF01266 FAD dependent oxidoreductase RIMD111065_23840 PF07969 Amidohydrolase family RIMD111065_23870 PF00478 IMP dehydrogenase / GMP reductase domain RIMD111065_23870 PF00571 CBS domain RIMD111065_23890 PF01717 Cobalamin-independent synthase, Catalytic domain RIMD111065_23890 PF08267 Cobalamin-independent synthase, N-terminal domain RIMD111065_23900 PF03466 LysR substrate binding domain RIMD111065_23900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_23920 PF00593 TonB dependent receptor RIMD111065_23920 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_23930 PF12833 Helix-turn-helix domain RIMD111065_23940 PF00106 short chain dehydrogenase RIMD111065_23950 PF03466 LysR substrate binding domain RIMD111065_23950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_23960 PF13460 NAD(P)H-binding RIMD111065_23980 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_23990 PF00675 Insulinase (Peptidase family M16) RIMD111065_23990 PF05193 Peptidase M16 inactive domain RIMD111065_24000 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_24000 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_24010 PF00893 Small Multidrug Resistance protein RIMD111065_24020 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding RIMD111065_24020 PF18381 YcaO cyclodehydratase C-terminal domain RIMD111065_24030 PF01226 Formate/nitrite transporter RIMD111065_24040 PF02901 Pyruvate formate lyase-like RIMD111065_24040 PF01228 Glycine radical RIMD111065_24060 PF00202 Aminotransferase class-III RIMD111065_24070 PF00266 Aminotransferase class-V RIMD111065_24080 PF07702 UTRA domain RIMD111065_24080 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_24100 PF00005 ABC transporter RIMD111065_24110 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_24120 PF01266 FAD dependent oxidoreductase RIMD111065_24140 PF03692 Putative zinc- or iron-chelating domain RIMD111065_24160 PF00549 CoA-ligase RIMD111065_24160 PF02629 CoA binding domain RIMD111065_24170 PF00549 CoA-ligase RIMD111065_24170 PF08442 ATP-grasp domain RIMD111065_24180 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) RIMD111065_24180 PF00364 Biotin-requiring enzyme RIMD111065_24180 PF02817 e3 binding domain RIMD111065_24190 PF16078 2-oxoglutarate dehydrogenase N-terminus RIMD111065_24190 PF02779 Transketolase, pyrimidine binding domain RIMD111065_24190 PF00676 Dehydrogenase E1 component RIMD111065_24190 PF16870 2-oxoglutarate dehydrogenase C-terminal RIMD111065_24200 PF13085 2Fe-2S iron-sulfur cluster binding domain RIMD111065_24210 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_24210 PF00890 FAD binding domain RIMD111065_24220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RIMD111065_24230 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit RIMD111065_24240 PF00285 Citrate synthase, C-terminal domain RIMD111065_24270 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_24270 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_24280 PF05430 S-adenosyl-L-methionine-dependent methyltransferase RIMD111065_24280 PF01266 FAD dependent oxidoreductase RIMD111065_24300 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_24330 PF01863 Protein of unknown function DUF45 RIMD111065_24360 PF01197 Ribosomal protein L31 RIMD111065_24370 PF05726 Pirin C-terminal cupin domain RIMD111065_24370 PF02678 Pirin RIMD111065_24380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_24380 PF03466 LysR substrate binding domain RIMD111065_24390 PF12833 Helix-turn-helix domain RIMD111065_24390 PF02311 AraC-like ligand binding domain RIMD111065_24400 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_24410 PF00005 ABC transporter RIMD111065_24420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_24430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_24440 PF00596 Class II Aldolase and Adducin N-terminal domain RIMD111065_24450 PF02610 L-arabinose isomerase RIMD111065_24450 PF11762 L-arabinose isomerase C-terminal domain RIMD111065_24510 PF00816 H-NS histone family RIMD111065_24550 PF13391 HNH endonuclease RIMD111065_24570 PF13439 Glycosyltransferase Family 4 RIMD111065_24570 PF00534 Glycosyl transferases group 1 RIMD111065_24700 PF13439 Glycosyltransferase Family 4 RIMD111065_24700 PF00534 Glycosyl transferases group 1 RIMD111065_24710 PF07238 PilZ domain RIMD111065_24710 PF00535 Glycosyl transferase family 2 RIMD111065_24710 PF03552 Cellulose synthase RIMD111065_24720 PF02397 Bacterial sugar transferase RIMD111065_24730 PF00534 Glycosyl transferases group 1 RIMD111065_24740 PF00211 Adenylate and Guanylate cyclase catalytic domain RIMD111065_24740 PF00072 Response regulator receiver domain RIMD111065_24810 PF09308 LuxQ, periplasmic RIMD111065_24810 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_24810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_24810 PF00072 Response regulator receiver domain RIMD111065_24820 PF00080 Copper/zinc superoxide dismutase (SODC) RIMD111065_24840 PF00199 Catalase RIMD111065_24840 PF06628 Catalase-related immune-responsive RIMD111065_24900 PF01048 Phosphorylase superfamily RIMD111065_24940 PF13737 Transposase DDE domain RIMD111065_24970 PF08411 Exonuclease C-terminal RIMD111065_24970 PF00929 Exonuclease RIMD111065_25000 PF03788 LrgA family RIMD111065_25010 PF04172 LrgB-like family RIMD111065_25020 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_25020 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region RIMD111065_25030 PF00501 AMP-binding enzyme RIMD111065_25040 PF08891 YfcL protein RIMD111065_25060 PF03741 Integral membrane protein TerC family RIMD111065_25070 PF00691 OmpA family RIMD111065_25080 PF17152 Periplasmic sensor domain RIMD111065_25080 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_25090 PF13689 YfiR/HmsC-like RIMD111065_25100 PF18024 Helix-turn-helix domain RIMD111065_25100 PF00158 Sigma-54 interaction domain RIMD111065_25110 PF01329 Pterin 4 alpha carbinolamine dehydratase RIMD111065_25120 PF00351 Biopterin-dependent aromatic amino acid hydroxylase RIMD111065_25130 PF05128 Domain of unknown function (DUF697) RIMD111065_25140 PF04317 YcjX-like family, DUF463 RIMD111065_25160 PF06667 Phage shock protein B RIMD111065_25170 PF04012 PspA/IM30 family RIMD111065_25180 PF02954 Bacterial regulatory protein, Fis family RIMD111065_25180 PF00158 Sigma-54 interaction domain RIMD111065_25190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_25200 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_25210 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_25210 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_25230 PF00005 ABC transporter RIMD111065_25230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_25240 PF00005 ABC transporter RIMD111065_25250 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) RIMD111065_25260 PF00156 Phosphoribosyl transferase domain RIMD111065_25270 PF02674 Colicin V production protein RIMD111065_25280 PF02403 Seryl-tRNA synthetase N-terminal domain RIMD111065_25280 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) RIMD111065_25300 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_25300 PF16193 AAA C-terminal domain RIMD111065_25300 PF12002 MgsA AAA+ ATPase C terminal RIMD111065_25310 PF03548 Outer membrane lipoprotein carrier protein LolA RIMD111065_25320 PF17854 FtsK alpha domain RIMD111065_25320 PF13491 4TM region of DNA translocase FtsK/SpoIIIE RIMD111065_25320 PF01580 FtsK/SpoIIIE family RIMD111065_25320 PF09397 Ftsk gamma domain RIMD111065_25330 PF01037 Lrp/AsnC ligand binding domain RIMD111065_25340 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_25340 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_25350 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_25360 PF17158 Membrane-associated sensor, integral membrane domain RIMD111065_25360 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_25370 PF05433 Glycine zipper 2TM domain RIMD111065_25380 PF03588 Leucyl/phenylalanyl-tRNA protein transferase RIMD111065_25390 PF04377 Arginine-tRNA-protein transferase, C terminus RIMD111065_25390 PF04376 Arginine-tRNA-protein transferase, N terminus RIMD111065_25400 PF01176 Translation initiation factor 1A / IF-1 RIMD111065_25410 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_25410 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_25410 PF17871 AAA lid domain RIMD111065_25410 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_25410 PF02861 Clp amino terminal domain, pathogenicity island component RIMD111065_25420 PF02617 ATP-dependent Clp protease adaptor protein ClpS RIMD111065_25430 PF00313 'Cold-shock' DNA-binding domain RIMD111065_25440 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain RIMD111065_25440 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain RIMD111065_25480 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_25510 PF14331 ImcF-related N-terminal domain RIMD111065_25510 PF06744 Type VI secretion protein IcmF C-terminal RIMD111065_25510 PF06761 Intracellular multiplication and human macrophage-killing RIMD111065_25540 PF00158 Sigma-54 interaction domain RIMD111065_25540 PF02954 Bacterial regulatory protein, Fis family RIMD111065_25550 PF10431 C-terminal, D2-small domain, of ClpB protein RIMD111065_25550 PF07724 AAA domain (Cdc48 subfamily) RIMD111065_25550 PF00004 ATPase family associated with various cellular activities (AAA) RIMD111065_25550 PF17871 AAA lid domain RIMD111065_25570 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE RIMD111065_25610 PF05947 Type VI secretion system, TssF RIMD111065_25630 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath RIMD111065_25700 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_25710 PF05638 Type VI secretion system effector, Hcp RIMD111065_25720 PF10722 Putative bacterial sensory transduction regulator RIMD111065_25740 PF00265 Thymidine kinase RIMD111065_25750 PF03553 Na+/H+ antiporter family RIMD111065_25760 PF00816 H-NS histone family RIMD111065_25770 PF01923 Cobalamin adenosyltransferase RIMD111065_25780 PF12843 Putative quorum-sensing-regulated virulence factor RIMD111065_25790 PF04055 Radical SAM superfamily RIMD111065_25800 PF06508 Queuosine biosynthesis protein QueC RIMD111065_25830 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family RIMD111065_25840 PF18073 Rubredoxin metal binding domain RIMD111065_25860 PF00216 Bacterial DNA-binding protein RIMD111065_25870 PF00575 S1 RNA binding domain RIMD111065_25880 PF02224 Cytidylate kinase RIMD111065_25890 PF00925 GTP cyclohydrolase II RIMD111065_25900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_25900 PF03466 LysR substrate binding domain RIMD111065_25910 PF03466 LysR substrate binding domain RIMD111065_25910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_25920 PF07690 Major Facilitator Superfamily RIMD111065_25950 PF00881 Nitroreductase family RIMD111065_25960 PF00563 EAL domain RIMD111065_25960 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_25960 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_25960 PF13188 PAS domain RIMD111065_25980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_25980 PF03466 LysR substrate binding domain RIMD111065_25990 PF00072 Response regulator receiver domain RIMD111065_26010 PF01212 Beta-eliminating lyase RIMD111065_26040 PF00248 Aldo/keto reductase family RIMD111065_26050 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) RIMD111065_26070 PF03411 Penicillin-insensitive murein endopeptidase RIMD111065_26090 PF04536 TPM domain RIMD111065_26110 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_26120 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_26120 PF00691 OmpA family RIMD111065_26130 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 RIMD111065_26140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit RIMD111065_26150 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit RIMD111065_26150 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit RIMD111065_26170 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit RIMD111065_26170 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RIMD111065_26180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_26180 PF00384 Molybdopterin oxidoreductase RIMD111065_26180 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region RIMD111065_26190 PF00146 NADH dehydrogenase RIMD111065_26200 PF12838 4Fe-4S dicluster domain RIMD111065_26210 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 RIMD111065_26220 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L RIMD111065_26230 PF00361 Proton-conducting membrane transporter RIMD111065_26230 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus RIMD111065_26240 PF00361 Proton-conducting membrane transporter RIMD111065_26250 PF00361 Proton-conducting membrane transporter RIMD111065_26270 PF00072 Response regulator receiver domain RIMD111065_26280 PF01966 HD domain RIMD111065_26290 PF02769 AIR synthase related protein, C-terminal domain RIMD111065_26290 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal RIMD111065_26290 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain RIMD111065_26300 PF01464 Transglycosylase SLT domain RIMD111065_26300 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_26310 PF07191 zinc-ribbons RIMD111065_26320 PF01926 50S ribosome-binding GTPase RIMD111065_26320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal RIMD111065_26330 PF13360 PQQ-like domain RIMD111065_26340 PF09976 Tetratricopeptide repeat-like domain RIMD111065_26350 PF13393 Histidyl-tRNA synthetase RIMD111065_26350 PF03129 Anticodon binding domain RIMD111065_26360 PF04551 GcpE protein RIMD111065_26370 PF13464 Domain of unknown function (DUF4115) RIMD111065_26390 PF04055 Radical SAM superfamily RIMD111065_26400 PF00334 Nucleoside diphosphate kinase RIMD111065_26410 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_26410 PF12404 Peptidase RIMD111065_26420 PF00883 Cytosol aminopeptidase family, catalytic domain RIMD111065_26420 PF12404 Peptidase RIMD111065_26430 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_26440 PF00012 Hsp70 protein RIMD111065_26450 PF07743 HSCB C-terminal oligomerisation domain RIMD111065_26460 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_26470 PF01592 NifU-like N terminal domain RIMD111065_26480 PF00266 Aminotransferase class-V RIMD111065_26490 PF02082 Transcriptional regulator RIMD111065_26500 PF00588 SpoU rRNA Methylase family RIMD111065_26520 PF02036 SCP-2 sterol transfer family RIMD111065_26530 PF01136 Peptidase family U32 RIMD111065_26540 PF01136 Peptidase family U32 RIMD111065_26550 PF07719 Tetratricopeptide repeat RIMD111065_26550 PF13181 Tetratricopeptide repeat RIMD111065_26570 PF07549 SecD/SecF GG Motif RIMD111065_26570 PF02355 Protein export membrane protein RIMD111065_26580 PF02355 Protein export membrane protein RIMD111065_26580 PF07549 SecD/SecF GG Motif RIMD111065_26580 PF13721 SecD export protein N-terminal TM region RIMD111065_26590 PF02699 Preprotein translocase subunit RIMD111065_26600 PF01702 Queuine tRNA-ribosyltransferase RIMD111065_26610 PF02547 Queuosine biosynthesis protein RIMD111065_26620 PF00571 CBS domain RIMD111065_26630 PF10417 C-terminal domain of 1-Cys peroxiredoxin RIMD111065_26630 PF00578 AhpC/TSA family RIMD111065_26640 PF13192 Thioredoxin domain RIMD111065_26640 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_26650 PF07690 Major Facilitator Superfamily RIMD111065_26670 PF08241 Methyltransferase domain RIMD111065_26680 PF03960 ArsC family RIMD111065_26690 PF01758 Sodium Bile acid symporter family RIMD111065_26700 PF01022 Bacterial regulatory protein, arsR family RIMD111065_26720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_26720 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_26720 PF00672 HAMP domain RIMD111065_26730 PF02347 Glycine cleavage system P-protein RIMD111065_26740 PF01597 Glycine cleavage H-protein RIMD111065_26750 PF01571 Aminomethyltransferase folate-binding domain RIMD111065_26750 PF08669 Glycine cleavage T-protein C-terminal barrel domain RIMD111065_26760 PF01494 FAD binding domain RIMD111065_26770 PF01494 FAD binding domain RIMD111065_26780 PF03695 Uncharacterised protein family (UPF0149) RIMD111065_26790 PF05164 Cell division protein ZapA RIMD111065_26800 PF07690 Major Facilitator Superfamily RIMD111065_26820 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_26820 PF00043 Glutathione S-transferase, C-terminal domain RIMD111065_26840 PF00459 Inositol monophosphatase family RIMD111065_26850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_26850 PF00672 HAMP domain RIMD111065_26850 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_26860 PF02535 ZIP Zinc transporter RIMD111065_26880 PF01048 Phosphorylase superfamily RIMD111065_26900 PF01497 Periplasmic binding protein RIMD111065_26910 PF02719 Polysaccharide biosynthesis protein RIMD111065_26920 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RIMD111065_26950 PF00202 Aminotransferase class-III RIMD111065_26980 PF08666 SAF domain RIMD111065_26980 PF03102 NeuB family RIMD111065_27030 PF02561 Flagellar protein FliS RIMD111065_27040 PF02465 Flagellar hook-associated protein 2 N-terminus RIMD111065_27040 PF07195 Flagellar hook-associated protein 2 C-terminus RIMD111065_27040 PF07196 Flagellin hook IN motif RIMD111065_27060 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_27060 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_27060 PF07196 Flagellin hook IN motif RIMD111065_27070 PF01527 Transposase RIMD111065_27090 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_27090 PF07196 Flagellin hook IN motif RIMD111065_27090 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_27100 PF00669 Bacterial flagellin N-terminal helical region RIMD111065_27100 PF00700 Bacterial flagellin C-terminal helical region RIMD111065_27110 PF03458 UPF0126 domain RIMD111065_27130 PF02926 THUMP domain RIMD111065_27130 PF02568 Thiamine biosynthesis protein (ThiI) RIMD111065_27150 PF06832 Penicillin-Binding Protein C-terminus Family RIMD111065_27150 PF00912 Transglycosylase RIMD111065_27150 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_27160 PF17962 Bacterial macroglobulin domain 6 RIMD111065_27160 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain RIMD111065_27160 PF01835 MG2 domain RIMD111065_27160 PF07678 A-macroglobulin TED domain RIMD111065_27160 PF11974 Bacterial alpha-2-macroglobulin MG3 domain RIMD111065_27160 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain RIMD111065_27160 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain RIMD111065_27160 PF07703 Alpha-2-macroglobulin bait region domain RIMD111065_27160 PF00207 Alpha-2-macroglobulin family RIMD111065_27170 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_27170 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_27180 PF00563 EAL domain RIMD111065_27180 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_27180 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_27190 PF04055 Radical SAM superfamily RIMD111065_27210 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_27220 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_27230 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_27240 PF00005 ABC transporter RIMD111065_27250 PF03956 Lysine exporter LysO RIMD111065_27260 PF01979 Amidohydrolase family RIMD111065_27270 PF04336 Acyl carrier protein phosphodiesterase RIMD111065_27300 PF03960 ArsC family RIMD111065_27310 PF00578 AhpC/TSA family RIMD111065_27320 PF13181 Tetratricopeptide repeat RIMD111065_27320 PF01435 Peptidase family M48 RIMD111065_27330 PF01206 Sulfurtransferase TusA RIMD111065_27340 PF01594 AI-2E family transporter RIMD111065_27350 PF00561 alpha/beta hydrolase fold RIMD111065_27360 PF03976 Polyphosphate kinase 2 (PPK2) RIMD111065_27370 PF00005 ABC transporter RIMD111065_27370 PF08402 TOBE domain RIMD111065_27380 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_27390 PF14785 Maltose transport system permease protein MalF P2 domain RIMD111065_27390 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_27400 PF01547 Bacterial extracellular solute-binding protein RIMD111065_27410 PF04245 37-kD nucleoid-associated bacterial protein RIMD111065_27420 PF07208 Protein of unknown function (DUF1414) RIMD111065_27430 PF11893 Domain of unknown function (DUF3413) RIMD111065_27430 PF00884 Sulfatase RIMD111065_27440 PF00593 TonB dependent receptor RIMD111065_27440 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_27450 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_27450 PF00326 Prolyl oligopeptidase family RIMD111065_27490 PF03974 Ecotin RIMD111065_27500 PF04219 Protein of unknown function, DUF RIMD111065_27510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_27510 PF03466 LysR substrate binding domain RIMD111065_27520 PF01817 Chorismate mutase type II RIMD111065_27520 PF02153 Prephenate dehydrogenase RIMD111065_27530 PF00793 DAHP synthetase I family RIMD111065_27540 PF03009 Glycerophosphoryl diester phosphodiesterase family RIMD111065_27550 PF01266 FAD dependent oxidoreductase RIMD111065_27550 PF16901 C-terminal domain of alpha-glycerophosphate oxidase RIMD111065_27570 PF08220 DeoR-like helix-turn-helix domain RIMD111065_27570 PF00455 DeoR C terminal sensor domain RIMD111065_27580 PF07690 Major Facilitator Superfamily RIMD111065_27590 PF00230 Major intrinsic protein RIMD111065_27600 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_27600 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RIMD111065_27610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_27610 PF03466 LysR substrate binding domain RIMD111065_27660 PF00248 Aldo/keto reductase family RIMD111065_27670 PF07690 Major Facilitator Superfamily RIMD111065_27680 PF02322 Cytochrome bd terminal oxidase subunit II RIMD111065_27690 PF01654 Cytochrome bd terminal oxidase subunit I RIMD111065_27700 PF00155 Aminotransferase class I and II RIMD111065_27700 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_27710 PF04391 Protein of unknown function (DUF533) RIMD111065_27720 PF00892 EamA-like transporter family RIMD111065_27750 PF10689 Protein of unknown function (DUF2496) RIMD111065_27770 PF07690 Major Facilitator Superfamily RIMD111065_27780 PF03466 LysR substrate binding domain RIMD111065_27780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_27800 PF07690 Major Facilitator Superfamily RIMD111065_27810 PF00849 RNA pseudouridylate synthase RIMD111065_27810 PF01479 S4 domain RIMD111065_27820 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase RIMD111065_27820 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain RIMD111065_27840 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_27860 PF01844 HNH endonuclease RIMD111065_27870 PF00300 Histidine phosphatase superfamily (branch 1) RIMD111065_27890 PF03313 Serine dehydratase alpha chain RIMD111065_27900 PF01042 Endoribonuclease L-PSP RIMD111065_27920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_27920 PF00672 HAMP domain RIMD111065_27950 PF17944 Arginine decarboxylase C-terminal helical extension RIMD111065_27950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_27950 PF17810 Arginine decarboxylase helical bundle domain RIMD111065_27970 PF01546 Peptidase family M20/M25/M40 RIMD111065_27970 PF07687 Peptidase dimerisation domain RIMD111065_28020 PF04264 YceI-like domain RIMD111065_28030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_28030 PF03466 LysR substrate binding domain RIMD111065_28050 PF01268 Formate--tetrahydrofolate ligase RIMD111065_28060 PF17200 Single Cache domain 2 RIMD111065_28060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_28060 PF00672 HAMP domain RIMD111065_28070 PF01227 GTP cyclohydrolase I RIMD111065_28080 PF00994 Probable molybdopterin binding domain RIMD111065_28080 PF03454 MoeA C-terminal region (domain IV) RIMD111065_28080 PF03453 MoeA N-terminal region (domain I and II) RIMD111065_28090 PF00899 ThiF family RIMD111065_28100 PF00561 alpha/beta hydrolase fold RIMD111065_28110 PF00005 ABC transporter RIMD111065_28110 PF03459 TOBE domain RIMD111065_28120 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_28140 PF02391 MoaE protein RIMD111065_28150 PF02597 ThiS family RIMD111065_28160 PF01967 MoaC family RIMD111065_28170 PF00994 Probable molybdopterin binding domain RIMD111065_28180 PF03264 NapC/NirT cytochrome c family, N-terminal region RIMD111065_28190 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) RIMD111065_28200 PF12801 4Fe-4S binding domain RIMD111065_28200 PF13237 4Fe-4S dicluster domain RIMD111065_28210 PF12838 4Fe-4S dicluster domain RIMD111065_28210 PF12800 4Fe-4S binding domain RIMD111065_28220 PF01568 Molydopterin dinucleotide binding domain RIMD111065_28220 PF00384 Molybdopterin oxidoreductase RIMD111065_28220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain RIMD111065_28220 PF10518 TAT (twin-arginine translocation) pathway signal sequence RIMD111065_28240 PF13187 4Fe-4S dicluster domain RIMD111065_28240 PF00037 4Fe-4S binding domain RIMD111065_28240 PF12800 4Fe-4S binding domain RIMD111065_28250 PF04055 Radical SAM superfamily RIMD111065_28250 PF06463 Molybdenum Cofactor Synthesis C RIMD111065_28260 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term RIMD111065_28260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_28260 PF07730 Histidine kinase RIMD111065_28260 PF00672 HAMP domain RIMD111065_28270 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_28270 PF00072 Response regulator receiver domain RIMD111065_28290 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_28290 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_28290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_28290 PF00072 Response regulator receiver domain RIMD111065_28310 PF01933 Uncharacterised protein family UPF0052 RIMD111065_28330 PF13230 Glutamine amidotransferases class-II RIMD111065_28340 PF13580 SIS domain RIMD111065_28350 PF09317 Domain of unknown function (DUF1974) RIMD111065_28350 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_28350 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_28350 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_28360 PF11849 Domain of unknown function (DUF3369) RIMD111065_28380 PF00929 Exonuclease RIMD111065_28390 PF00075 RNase H RIMD111065_28400 PF08241 Methyltransferase domain RIMD111065_28410 PF00753 Metallo-beta-lactamase superfamily RIMD111065_28410 PF16123 Hydroxyacylglutathione hydrolase C-terminus RIMD111065_28420 PF01464 Transglycosylase SLT domain RIMD111065_28420 PF01476 LysM domain RIMD111065_28430 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_28450 PF03061 Thioesterase superfamily RIMD111065_28470 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_28480 PF01464 Transglycosylase SLT domain RIMD111065_28480 PF14718 Soluble lytic murein transglycosylase L domain RIMD111065_28490 PF00563 EAL domain RIMD111065_28490 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_28490 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_28500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein RIMD111065_28520 PF04357 TamB, inner membrane protein subunit of TAM complex RIMD111065_28530 PF01103 Surface antigen RIMD111065_28530 PF07244 Surface antigen variable number repeat RIMD111065_28530 PF17243 POTRA domain TamA domain 1 RIMD111065_28560 PF01625 Peptide methionine sulfoxide reductase RIMD111065_28580 PF02627 Carboxymuconolactone decarboxylase family RIMD111065_28590 PF00403 Heavy-metal-associated domain RIMD111065_28590 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_28590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain RIMD111065_28600 PF13416 Bacterial extracellular solute-binding protein RIMD111065_28620 PF00005 ABC transporter RIMD111065_28630 PF01066 CDP-alcohol phosphatidyltransferase RIMD111065_28640 PF13406 Transglycosylase SLT domain RIMD111065_28670 PF01047 MarR family RIMD111065_28690 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II RIMD111065_28690 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I RIMD111065_28690 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III RIMD111065_28690 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain RIMD111065_28700 PF03925 SeqA protein C-terminal domain RIMD111065_28700 PF17206 SeqA protein N-terminal domain RIMD111065_28710 PF12697 Alpha/beta hydrolase family RIMD111065_28730 PF01402 Ribbon-helix-helix protein, copG family RIMD111065_28740 PF00258 Flavodoxin RIMD111065_28760 PF01475 Ferric uptake regulator family RIMD111065_28770 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain RIMD111065_28770 PF00749 tRNA synthetases class I (E and Q), catalytic domain RIMD111065_28780 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain RIMD111065_28780 PF00728 Glycosyl hydrolase family 20, catalytic domain RIMD111065_28780 PF02838 Glycosyl hydrolase family 20, domain 2 RIMD111065_28780 PF03173 Putative carbohydrate binding domain RIMD111065_28790 PF02378 Phosphotransferase system, EIIC RIMD111065_28790 PF00367 phosphotransferase system, EIIB RIMD111065_28790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 RIMD111065_28800 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase RIMD111065_28810 PF01979 Amidohydrolase family RIMD111065_28820 PF01047 MarR family RIMD111065_28820 PF00480 ROK family RIMD111065_28830 PF08019 Phosphoethanolamine transferase EptA/EptB RIMD111065_28830 PF00884 Sulfatase RIMD111065_28840 PF01709 Transcriptional regulator RIMD111065_28850 PF02938 GAD domain RIMD111065_28850 PF01336 OB-fold nucleic acid binding domain RIMD111065_28850 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_28860 PF01904 Protein of unknown function DUF72 RIMD111065_28870 PF13649 Methyltransferase domain RIMD111065_28880 PF08003 Protein of unknown function (DUF1698) RIMD111065_28920 PF00578 AhpC/TSA family RIMD111065_28920 PF10417 C-terminal domain of 1-Cys peroxiredoxin RIMD111065_28930 PF03466 LysR substrate binding domain RIMD111065_28930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_28940 PF07968 Leukocidin/Hemolysin toxin family RIMD111065_28940 PF12563 Hemolytic toxin N terminal RIMD111065_28950 PF00877 NlpC/P60 family RIMD111065_28970 PF00171 Aldehyde dehydrogenase family RIMD111065_28980 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_28980 PF08359 YsiA-like protein, C-terminal region RIMD111065_29000 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_29020 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_29060 PF01554 MatE RIMD111065_29100 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II RIMD111065_29100 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg RIMD111065_29100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_29100 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase RIMD111065_29100 PF10371 Domain of unknown function RIMD111065_29110 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region RIMD111065_29110 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster RIMD111065_29110 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_29120 PF03473 MOSC domain RIMD111065_29120 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_29120 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_29120 PF03476 MOSC N-terminal beta barrel domain RIMD111065_29120 PF03476 MOSC N-terminal beta barrel domain RIMD111065_29120 PF03473 MOSC domain RIMD111065_29130 PF13426 PAS domain RIMD111065_29130 PF08447 PAS fold RIMD111065_29130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_29140 PF01435 Peptidase family M48 RIMD111065_29160 PF12697 Alpha/beta hydrolase family RIMD111065_29160 PF08241 Methyltransferase domain RIMD111065_29170 PF00155 Aminotransferase class I and II RIMD111065_29180 PF06968 Biotin and Thiamin Synthesis associated domain RIMD111065_29180 PF04055 Radical SAM superfamily RIMD111065_29190 PF00202 Aminotransferase class-III RIMD111065_29220 PF00152 tRNA synthetases class II (D, K and N) RIMD111065_29220 PF01336 OB-fold nucleic acid binding domain RIMD111065_29230 PF03605 Anaerobic c4-dicarboxylate membrane transporter RIMD111065_29250 PF07687 Peptidase dimerisation domain RIMD111065_29250 PF01546 Peptidase family M20/M25/M40 RIMD111065_29260 PF03606 C4-dicarboxylate anaerobic carrier RIMD111065_29280 PF03466 LysR substrate binding domain RIMD111065_29280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_29290 PF03960 ArsC family RIMD111065_29300 PF07687 Peptidase dimerisation domain RIMD111065_29300 PF01546 Peptidase family M20/M25/M40 RIMD111065_29310 PF02557 D-alanyl-D-alanine carboxypeptidase RIMD111065_29330 PF00999 Sodium/hydrogen exchanger family RIMD111065_29330 PF03471 Transporter associated domain RIMD111065_29330 PF02080 TrkA-C domain RIMD111065_29350 PF00999 Sodium/hydrogen exchanger family RIMD111065_29350 PF02080 TrkA-C domain RIMD111065_29350 PF03471 Transporter associated domain RIMD111065_29370 PF01810 LysE type translocator RIMD111065_29380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_29380 PF00672 HAMP domain RIMD111065_29390 PF07509 Protein of unknown function (DUF1523) RIMD111065_29420 PF01156 Inosine-uridine preferring nucleoside hydrolase RIMD111065_29430 PF00849 RNA pseudouridylate synthase RIMD111065_29440 PF01048 Phosphorylase superfamily RIMD111065_29450 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_29460 PF04355 SmpA / OmlA family RIMD111065_29470 PF13460 NAD(P)H-binding RIMD111065_29480 PF03658 RnfH family Ubiquitin RIMD111065_29490 PF03364 Polyketide cyclase / dehydrase and lipid transport RIMD111065_29500 PF01668 SmpB protein RIMD111065_29510 PF13356 Arm DNA-binding domain RIMD111065_29510 PF00589 Phage integrase family RIMD111065_29620 PF00271 Helicase conserved C-terminal domain RIMD111065_29620 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_29620 PF04851 Type III restriction enzyme, res subunit RIMD111065_29620 PF08463 EcoEI R protein C-terminal RIMD111065_29630 PF02384 N-6 DNA Methylase RIMD111065_29630 PF12161 HsdM N-terminal domain RIMD111065_29640 PF01420 Type I restriction modification DNA specificity domain RIMD111065_29670 PF04471 Restriction endonuclease RIMD111065_29670 PF14338 Mrr N-terminal domain RIMD111065_29680 PF00271 Helicase conserved C-terminal domain RIMD111065_29680 PF04851 Type III restriction enzyme, res subunit RIMD111065_29680 PF08463 EcoEI R protein C-terminal RIMD111065_29680 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) RIMD111065_29690 PF02384 N-6 DNA Methylase RIMD111065_29700 PF01420 Type I restriction modification DNA specificity domain RIMD111065_29710 PF04320 Protein with unknown function (DUF469) RIMD111065_29730 PF03466 LysR substrate binding domain RIMD111065_29730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_29740 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_29760 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_29770 PF12833 Helix-turn-helix domain RIMD111065_29780 PF01238 Phosphomannose isomerase type I RIMD111065_29840 PF00155 Aminotransferase class I and II RIMD111065_29850 PF02378 Phosphotransferase system, EIIC RIMD111065_29850 PF00367 phosphotransferase system, EIIB RIMD111065_29860 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_29860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_29870 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_29870 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_29880 PF13411 MerR HTH family regulatory protein RIMD111065_29900 PF00583 Acetyltransferase (GNAT) family RIMD111065_29940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_29940 PF02378 Phosphotransferase system, EIIC RIMD111065_29940 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_29950 PF07690 Major Facilitator Superfamily RIMD111065_29960 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_29960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_29960 PF02378 Phosphotransferase system, EIIC RIMD111065_29980 PF00849 RNA pseudouridylate synthase RIMD111065_29990 PF00293 NUDIX domain RIMD111065_30010 PF04356 Protein of unknown function (DUF489) RIMD111065_30020 PF00206 Lyase RIMD111065_30020 PF08328 Adenylosuccinate lyase C-terminal RIMD111065_30030 PF08007 Cupin superfamily protein RIMD111065_30040 PF13508 Acetyltransferase (GNAT) domain RIMD111065_30060 PF02798 Glutathione S-transferase, N-terminal domain RIMD111065_30070 PF01243 Pyridoxamine 5'-phosphate oxidase RIMD111065_30070 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region RIMD111065_30100 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_30100 PF01029 NusB family RIMD111065_30110 PF00462 Glutaredoxin RIMD111065_30120 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RIMD111065_30120 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RIMD111065_30130 PF04333 MlaA lipoprotein RIMD111065_30140 PF03918 Cytochrome C biogenesis protein RIMD111065_30150 PF03918 Cytochrome C biogenesis protein RIMD111065_30160 PF08534 Redoxin RIMD111065_30170 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal RIMD111065_30170 PF01578 Cytochrome C assembly protein RIMD111065_30180 PF03100 CcmE RIMD111065_30190 PF04995 Heme exporter protein D (CcmD) RIMD111065_30200 PF01578 Cytochrome C assembly protein RIMD111065_30210 PF03379 CcmB protein RIMD111065_30220 PF00005 ABC transporter RIMD111065_30240 PF01584 CheW-like domain RIMD111065_30260 PF13614 AAA domain RIMD111065_30270 PF13677 Membrane MotB of proton-channel complex MotA/MotB RIMD111065_30270 PF00691 OmpA family RIMD111065_30280 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_30290 PF01339 CheB methylesterase RIMD111065_30290 PF00072 Response regulator receiver domain RIMD111065_30300 PF00072 Response regulator receiver domain RIMD111065_30300 PF01627 Hpt domain RIMD111065_30300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_30300 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_30300 PF01584 CheW-like domain RIMD111065_30310 PF04344 Chemotaxis phosphatase, CheZ RIMD111065_30320 PF00072 Response regulator receiver domain RIMD111065_30330 PF04539 Sigma-70 region 3 RIMD111065_30330 PF04545 Sigma-70, region 4 RIMD111065_30330 PF04542 Sigma-70 region 2 RIMD111065_30340 PF10609 NUBPL iron-transfer P-loop NTPase RIMD111065_30350 PF00448 SRP54-type protein, GTPase domain RIMD111065_30360 PF00771 FHIPEP family RIMD111065_30370 PF01312 FlhB HrpN YscU SpaS Family RIMD111065_30380 PF01311 Bacterial export proteins, family 1 RIMD111065_30390 PF01313 Bacterial export proteins, family 3 RIMD111065_30400 PF00813 FliP family RIMD111065_30410 PF04347 Flagellar biosynthesis protein, FliO RIMD111065_30420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RIMD111065_30430 PF02154 Flagellar motor switch protein FliM RIMD111065_30430 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term RIMD111065_30470 PF18269 T3SS EscN ATPase C-terminal domain RIMD111065_30470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_30490 PF14842 FliG N-terminal domain RIMD111065_30490 PF01706 FliG C-terminal domain RIMD111065_30490 PF14841 FliG middle domain RIMD111065_30500 PF01514 Secretory protein of YscJ/FliF family RIMD111065_30500 PF08345 Flagellar M-ring protein C-terminal RIMD111065_30510 PF02049 Flagellar hook-basal body complex protein FliE RIMD111065_30530 PF00072 Response regulator receiver domain RIMD111065_30540 PF00919 Uncharacterized protein family UPF0004 RIMD111065_30540 PF18693 TRAM domain RIMD111065_30540 PF04055 Radical SAM superfamily RIMD111065_30560 PF07634 RtxA repeat RIMD111065_30560 PF11647 Membrane Localization Domain RIMD111065_30560 PF12146 Serine aminopeptidase, S33 RIMD111065_30560 PF11713 Peptidase C80 family RIMD111065_30560 PF16671 Actin cross-linking domain RIMD111065_30570 PF02794 RTX toxin acyltransferase family RIMD111065_30590 PF00664 ABC transporter transmembrane region RIMD111065_30590 PF00005 ABC transporter RIMD111065_30590 PF03412 Peptidase C39 family RIMD111065_30610 PF03412 Peptidase C39 family RIMD111065_30610 PF00664 ABC transporter transmembrane region RIMD111065_30610 PF00005 ABC transporter RIMD111065_30620 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_30620 PF00072 Response regulator receiver domain RIMD111065_30630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_30640 PF02685 Glucokinase RIMD111065_30650 PF01380 SIS domain RIMD111065_30650 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_30660 PF00224 Pyruvate kinase, barrel domain RIMD111065_30660 PF02887 Pyruvate kinase, alpha/beta domain RIMD111065_30680 PF00873 AcrB/AcrD/AcrF family RIMD111065_30690 PF09317 Domain of unknown function (DUF1974) RIMD111065_30690 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_30690 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_30690 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_30700 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_30720 PF00384 Molybdopterin oxidoreductase RIMD111065_30730 PF02634 FdhD/NarQ family RIMD111065_30740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_30740 PF03466 LysR substrate binding domain RIMD111065_30780 PF00936 BMC domain RIMD111065_30790 PF00936 BMC domain RIMD111065_30800 PF00936 BMC domain RIMD111065_30810 PF00171 Aldehyde dehydrogenase family RIMD111065_30810 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_30830 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_30840 PF01228 Glycine radical RIMD111065_30840 PF02901 Pyruvate formate lyase-like RIMD111065_30860 PF13187 4Fe-4S dicluster domain RIMD111065_30860 PF04055 Radical SAM superfamily RIMD111065_30870 PF00936 BMC domain RIMD111065_30880 PF06130 Phosphate propanoyltransferase RIMD111065_30900 PF00893 Small Multidrug Resistance protein RIMD111065_30910 PF00893 Small Multidrug Resistance protein RIMD111065_30960 PF13088 BNR repeat-like domain RIMD111065_30960 PF09264 Vibrio cholerae sialidase, lectin insertion RIMD111065_30970 PF04074 YhcH/YjgK/YiaL RIMD111065_30980 PF00474 Sodium:solute symporter family RIMD111065_30990 PF00480 ROK family RIMD111065_31000 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase RIMD111065_31010 PF01380 SIS domain RIMD111065_31010 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_31020 PF00701 Dihydrodipicolinate synthetase family RIMD111065_31030 PF00141 Peroxidase RIMD111065_31040 PF08220 DeoR-like helix-turn-helix domain RIMD111065_31040 PF00455 DeoR C terminal sensor domain RIMD111065_31050 PF07690 Major Facilitator Superfamily RIMD111065_31060 PF02952 L-fucose isomerase, C-terminal domain RIMD111065_31060 PF07881 L-fucose isomerase, first N-terminal domain RIMD111065_31060 PF07882 L-fucose isomerase, second N-terminal domain RIMD111065_31070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain RIMD111065_31070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain RIMD111065_31090 PF05025 RbsD / FucU transport protein family RIMD111065_31100 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_31110 PF00005 ABC transporter RIMD111065_31110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region RIMD111065_31120 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_31120 PF12911 N-terminal TM domain of oligopeptide transport permease C RIMD111065_31130 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_31140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_31150 PF03734 L,D-transpeptidase catalytic domain RIMD111065_31150 PF17969 L,D-transpeptidase C-terminal domain RIMD111065_31150 PF01476 LysM domain RIMD111065_31170 PF01575 MaoC like domain RIMD111065_31180 PF05971 RNA methyltransferase RIMD111065_31190 PF00877 NlpC/P60 family RIMD111065_31200 PF01648 4'-phosphopantetheinyl transferase superfamily RIMD111065_31210 PF00085 Thioredoxin RIMD111065_31230 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase RIMD111065_31240 PF01842 ACT domain RIMD111065_31240 PF00551 Formyl transferase RIMD111065_31260 PF13396 Phospholipase_D-nuclease N-terminal RIMD111065_31260 PF13091 PLD-like domain RIMD111065_31290 PF01551 Peptidase family M23 RIMD111065_31300 PF00128 Alpha amylase, catalytic domain RIMD111065_31310 PF01551 Peptidase family M23 RIMD111065_31310 PF01464 Transglycosylase SLT domain RIMD111065_31310 PF10145 Phage-related minor tail protein RIMD111065_31320 PF00230 Major intrinsic protein RIMD111065_31330 PF02075 Crossover junction endodeoxyribonuclease RuvC RIMD111065_31340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RIMD111065_31420 PF04055 Radical SAM superfamily RIMD111065_31420 PF11842 Domain of unknown function (DUF3362) RIMD111065_31420 PF08497 Radical SAM N-terminal RIMD111065_31440 PF00873 AcrB/AcrD/AcrF family RIMD111065_31450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_31450 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_31460 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_31470 PF01734 Patatin-like phospholipase RIMD111065_31480 PF00209 Sodium:neurotransmitter symporter family RIMD111065_31520 PF00691 OmpA family RIMD111065_31520 PF01389 OmpA-like transmembrane domain RIMD111065_31530 PF00691 OmpA family RIMD111065_31530 PF01389 OmpA-like transmembrane domain RIMD111065_31540 PF01389 OmpA-like transmembrane domain RIMD111065_31540 PF00691 OmpA family RIMD111065_31550 PF03949 Malic enzyme, NAD binding domain RIMD111065_31550 PF00390 Malic enzyme, N-terminal domain RIMD111065_31560 PF12833 Helix-turn-helix domain RIMD111065_31570 PF01554 MatE RIMD111065_31580 PF10692 Protein of unknown function (DUF2498) RIMD111065_31590 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_31590 PF00072 Response regulator receiver domain RIMD111065_31600 PF00860 Permease family RIMD111065_31620 PF01235 Sodium:alanine symporter family RIMD111065_31630 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RIMD111065_31630 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_31640 PF01699 Sodium/calcium exchanger protein RIMD111065_31650 PF08534 Redoxin RIMD111065_31670 PF00293 NUDIX domain RIMD111065_31710 PF00005 ABC transporter RIMD111065_31720 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_31720 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_31730 PF03932 CutC family RIMD111065_31740 PF00480 ROK family RIMD111065_31760 PF01435 Peptidase family M48 RIMD111065_31770 PF12849 PBP superfamily domain RIMD111065_31780 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_31780 PF00989 PAS fold RIMD111065_31780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_31780 PF11808 Phosphate regulon sensor protein PhoR RIMD111065_31790 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_31790 PF00072 Response regulator receiver domain RIMD111065_31800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily RIMD111065_31810 PF02515 CoA-transferase family III RIMD111065_31820 PF00441 Acyl-CoA dehydrogenase, C-terminal domain RIMD111065_31820 PF02770 Acyl-CoA dehydrogenase, middle domain RIMD111065_31820 PF02771 Acyl-CoA dehydrogenase, N-terminal domain RIMD111065_31830 PF00158 Sigma-54 interaction domain RIMD111065_31830 PF01590 GAF domain RIMD111065_31830 PF02954 Bacterial regulatory protein, Fis family RIMD111065_31840 PF00171 Aldehyde dehydrogenase family RIMD111065_31860 PF00892 EamA-like transporter family RIMD111065_31870 PF00072 Response regulator receiver domain RIMD111065_31870 PF12431 Transcriptional regulator RIMD111065_31880 PF17203 Single cache domain 3 RIMD111065_31880 PF00989 PAS fold RIMD111065_31880 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain RIMD111065_31880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_31890 PF00390 Malic enzyme, N-terminal domain RIMD111065_31890 PF03949 Malic enzyme, NAD binding domain RIMD111065_31900 PF03390 2-hydroxycarboxylate transporter family RIMD111065_31910 PF01047 MarR family RIMD111065_31920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_31920 PF00529 HlyD membrane-fusion protein of T1SS RIMD111065_31970 PF01679 Proteolipid membrane potential modulator RIMD111065_31990 PF03477 ATP cone domain RIMD111065_31990 PF13597 Anaerobic ribonucleoside-triphosphate reductase RIMD111065_32010 PF12826 Helix-hairpin-helix motif RIMD111065_32010 PF00533 BRCA1 C Terminus (BRCT) domain RIMD111065_32010 PF01653 NAD-dependent DNA ligase adenylation domain RIMD111065_32010 PF03120 NAD-dependent DNA ligase OB-fold domain RIMD111065_32010 PF03119 NAD-dependent DNA ligase C4 zinc finger domain RIMD111065_32020 PF04354 ZipA, C-terminal FtsZ-binding domain RIMD111065_32030 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_32030 PF06470 SMC proteins Flexible Hinge Domain RIMD111065_32050 PF03458 UPF0126 domain RIMD111065_32070 PF05951 Bacterial protein of unknown function (DUF882) RIMD111065_32080 PF03734 L,D-transpeptidase catalytic domain RIMD111065_32080 PF01471 Putative peptidoglycan binding domain RIMD111065_32110 PF00535 Glycosyl transferase family 2 RIMD111065_32140 PF00128 Alpha amylase, catalytic domain RIMD111065_32160 PF00072 Response regulator receiver domain RIMD111065_32160 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_32200 PF00999 Sodium/hydrogen exchanger family RIMD111065_32200 PF02080 TrkA-C domain RIMD111065_32200 PF02254 TrkA-N domain RIMD111065_32210 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_32220 PF11734 TilS substrate C-terminal domain RIMD111065_32220 PF01171 PP-loop family RIMD111065_32220 PF09179 TilS substrate binding domain RIMD111065_32230 PF01431 Peptidase family M13 RIMD111065_32230 PF05649 Peptidase family M13 RIMD111065_32250 PF16326 ABC transporter C-terminal domain RIMD111065_32250 PF12848 ABC transporter RIMD111065_32250 PF00005 ABC transporter RIMD111065_32270 PF13520 Amino acid permease RIMD111065_32280 PF03466 LysR substrate binding domain RIMD111065_32280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_32290 PF12146 Serine aminopeptidase, S33 RIMD111065_32300 PF12146 Serine aminopeptidase, S33 RIMD111065_32310 PF03466 LysR substrate binding domain RIMD111065_32310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_32320 PF12706 Beta-lactamase superfamily domain RIMD111065_32340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_32340 PF03466 LysR substrate binding domain RIMD111065_32360 PF08543 Phosphomethylpyrimidine kinase RIMD111065_32370 PF01276 Orn/Lys/Arg decarboxylase, major domain RIMD111065_32370 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain RIMD111065_32370 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain RIMD111065_32380 PF13520 Amino acid permease RIMD111065_32390 PF18500 CadC C-terminal domain 1 RIMD111065_32390 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_32400 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit RIMD111065_32410 PF07733 Bacterial DNA polymerase III alpha NTPase domain RIMD111065_32410 PF14579 Helix-hairpin-helix motif RIMD111065_32410 PF02811 PHP domain RIMD111065_32410 PF17657 Bacterial DNA polymerase III alpha subunit finger domain RIMD111065_32410 PF01336 OB-fold nucleic acid binding domain RIMD111065_32420 PF01351 Ribonuclease HII RIMD111065_32430 PF02684 Lipid-A-disaccharide synthetase RIMD111065_32440 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_32440 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 RIMD111065_32450 PF07977 FabA-like domain RIMD111065_32460 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_32460 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD RIMD111065_32470 PF03938 Outer membrane protein (OmpH-like) RIMD111065_32480 PF01103 Surface antigen RIMD111065_32480 PF07244 Surface antigen variable number repeat RIMD111065_32490 PF17820 PDZ domain RIMD111065_32490 PF02163 Peptidase family M50 RIMD111065_32500 PF13288 DXP reductoisomerase C-terminal domain RIMD111065_32500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase RIMD111065_32500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain RIMD111065_32520 PF01255 Putative undecaprenyl diphosphate synthase RIMD111065_32530 PF01765 Ribosome recycling factor RIMD111065_32540 PF00696 Amino acid kinase family RIMD111065_32550 PF00889 Elongation factor TS RIMD111065_32560 PF00318 Ribosomal protein S2 RIMD111065_32570 PF00557 Metallopeptidase family M24 RIMD111065_32580 PF01966 HD domain RIMD111065_32580 PF08335 GlnD PII-uridylyltransferase RIMD111065_32580 PF01842 ACT domain RIMD111065_32580 PF01909 Nucleotidyltransferase domain RIMD111065_32590 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal RIMD111065_32590 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_32590 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_32600 PF11944 Protein of unknown function (DUF3461) RIMD111065_32610 PF02378 Phosphotransferase system, EIIC RIMD111065_32610 PF00367 phosphotransferase system, EIIB RIMD111065_32620 PF07148 Maltose operon periplasmic protein precursor (MalM) RIMD111065_32630 PF02264 LamB porin RIMD111065_32640 PF00258 Flavodoxin RIMD111065_32650 PF00849 RNA pseudouridylate synthase RIMD111065_32660 PF04287 tRNA pseudouridine synthase C RIMD111065_32710 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) RIMD111065_32720 PF07348 Syd protein (SUKH-2) RIMD111065_32730 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term RIMD111065_32730 PF14489 QueF-like protein RIMD111065_32750 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_32760 PF11892 Domain of unknown function (DUF3412) RIMD111065_32760 PF03641 Possible lysine decarboxylase RIMD111065_32760 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases RIMD111065_32770 PF01367 5'-3' exonuclease, C-terminal SAM fold RIMD111065_32770 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RIMD111065_32780 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_32780 PF18324 Hypothetical protein TT1725 RIMD111065_32800 PF18125 RlmM ferredoxin-like domain RIMD111065_32800 PF01728 FtsJ-like methyltransferase RIMD111065_32810 PF04241 Protein of unknown function (DUF423) RIMD111065_32830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_32830 PF03466 LysR substrate binding domain RIMD111065_32840 PF00672 HAMP domain RIMD111065_32840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_32850 PF11799 impB/mucB/samB family C-terminal domain RIMD111065_32850 PF00817 impB/mucB/samB family RIMD111065_32850 PF11798 IMS family HHH motif RIMD111065_32880 PF02424 ApbE family RIMD111065_32890 PF00111 2Fe-2S iron-sulfur cluster binding domain RIMD111065_32890 PF00970 Oxidoreductase FAD-binding domain RIMD111065_32890 PF00175 Oxidoreductase NAD-binding domain RIMD111065_32900 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_32910 PF02508 Rnf-Nqr subunit, membrane protein RIMD111065_32920 PF04205 FMN-binding domain RIMD111065_32930 PF03116 NQR2, RnfD, RnfE family RIMD111065_32940 PF11973 NQRA C-terminal domain RIMD111065_32940 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) RIMD111065_32950 PF01722 BolA-like protein RIMD111065_32960 PF05175 Methyltransferase small domain RIMD111065_32980 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD RIMD111065_33000 PF07690 Major Facilitator Superfamily RIMD111065_33010 PF03502 Nucleoside-specific channel-forming protein, Tsx RIMD111065_33020 PF04461 Protein of unknown function (DUF520) RIMD111065_33030 PF02558 Ketopantoate reductase PanE/ApbA RIMD111065_33030 PF08546 Ketopantoate reductase PanE/ApbA C terminal RIMD111065_33040 PF01965 DJ-1/PfpI family RIMD111065_33050 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_33050 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_33050 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_33060 PF03306 Alpha-acetolactate decarboxylase RIMD111065_33070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_33070 PF03466 LysR substrate binding domain RIMD111065_33140 PF04717 Type VI secretion system, phage-baseplate injector RIMD111065_33160 PF05638 Type VI secretion system effector, Hcp RIMD111065_33170 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_33170 PF03472 Autoinducer binding domain RIMD111065_33180 PF13356 Arm DNA-binding domain RIMD111065_33180 PF00589 Phage integrase family RIMD111065_33270 PF00665 Integrase core domain RIMD111065_33270 PF01527 Transposase RIMD111065_33270 PF13276 HTH-like domain RIMD111065_33270 PF13333 Integrase core domain RIMD111065_33280 PF00872 Transposase, Mutator family RIMD111065_33290 PF00872 Transposase, Mutator family RIMD111065_33300 PF12561 ToxR activated gene A lipoprotein domain RIMD111065_33300 PF17945 Beta/Gamma crystallin RIMD111065_33310 PF13737 Transposase DDE domain RIMD111065_33330 PF13737 Transposase DDE domain RIMD111065_33340 PF00563 EAL domain RIMD111065_33340 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_33340 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_33360 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_33380 PF12792 CSS motif domain associated with EAL RIMD111065_33380 PF00563 EAL domain RIMD111065_33420 PF13358 DDE superfamily endonuclease RIMD111065_33420 PF13592 Winged helix-turn helix RIMD111065_33430 PF00816 H-NS histone family RIMD111065_33450 PF13148 Protein of unknown function (DUF3987) RIMD111065_33490 PF09588 YqaJ-like viral recombinase domain RIMD111065_33590 PF04002 RadC-like JAB domain RIMD111065_33660 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A RIMD111065_33680 PF06965 Na+/H+ antiporter 1 RIMD111065_33680 PF13462 Thioredoxin RIMD111065_33690 PF16363 GDP-mannose 4,6 dehydratase RIMD111065_33700 PF00042 Globin RIMD111065_33700 PF00175 Oxidoreductase NAD-binding domain RIMD111065_33700 PF00970 Oxidoreductase FAD-binding domain RIMD111065_33710 PF03063 Prismane/CO dehydrogenase family RIMD111065_33720 PF00210 Ferritin-like domain RIMD111065_33800 PF00106 short chain dehydrogenase RIMD111065_33820 PF03441 FAD binding domain of DNA photolyase RIMD111065_33820 PF00875 DNA photolyase RIMD111065_33830 PF13411 MerR HTH family regulatory protein RIMD111065_33840 PF08349 Protein of unknown function (DUF1722) RIMD111065_33900 PF00800 Prephenate dehydratase RIMD111065_33900 PF01817 Chorismate mutase type II RIMD111065_33940 PF08220 DeoR-like helix-turn-helix domain RIMD111065_33940 PF00455 DeoR C terminal sensor domain RIMD111065_33950 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase RIMD111065_33950 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase RIMD111065_33960 PF07005 Sugar-binding N-terminal domain RIMD111065_33960 PF17042 Nucleotide-binding C-terminal domain RIMD111065_33970 PF00596 Class II Aldolase and Adducin N-terminal domain RIMD111065_33980 PF01261 Xylose isomerase-like TIM barrel RIMD111065_33990 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_34000 PF02447 GntP family permease RIMD111065_34020 PF00672 HAMP domain RIMD111065_34020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_34020 PF02743 Cache domain RIMD111065_34030 PF03573 outer membrane porin, OprD family RIMD111065_34040 PF00106 short chain dehydrogenase RIMD111065_34090 PF02074 Carboxypeptidase Taq (M32) metallopeptidase RIMD111065_34110 PF06029 AlkA N-terminal domain RIMD111065_34110 PF12833 Helix-turn-helix domain RIMD111065_34110 PF00730 HhH-GPD superfamily base excision DNA repair protein RIMD111065_34110 PF02805 Metal binding domain of Ada RIMD111065_34120 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_34120 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_34140 PF12392 Collagenase RIMD111065_34140 PF01136 Peptidase family U32 RIMD111065_34150 PF01810 LysE type translocator RIMD111065_34160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_34160 PF03466 LysR substrate binding domain RIMD111065_34170 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal RIMD111065_34170 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III RIMD111065_34180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_34180 PF02743 Cache domain RIMD111065_34180 PF00672 HAMP domain RIMD111065_34190 PF00072 Response regulator receiver domain RIMD111065_34210 PF02895 Signal transducing histidine kinase, homodimeric domain RIMD111065_34210 PF01627 Hpt domain RIMD111065_34210 PF01584 CheW-like domain RIMD111065_34210 PF07194 P2 response regulator binding domain RIMD111065_34210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_34220 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_34220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_34220 PF00672 HAMP domain RIMD111065_34230 PF01584 CheW-like domain RIMD111065_34240 PF02203 Tar ligand binding domain homologue RIMD111065_34240 PF00672 HAMP domain RIMD111065_34240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_34250 PF03705 CheR methyltransferase, all-alpha domain RIMD111065_34250 PF01739 CheR methyltransferase, SAM binding domain RIMD111065_34260 PF03975 CheD chemotactic sensory transduction RIMD111065_34270 PF01339 CheB methylesterase RIMD111065_34270 PF00072 Response regulator receiver domain RIMD111065_34280 PF00266 Aminotransferase class-V RIMD111065_34300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_34300 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_34300 PF00072 Response regulator receiver domain RIMD111065_34300 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_34300 PF00672 HAMP domain RIMD111065_34300 PF01627 Hpt domain RIMD111065_34310 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_34310 PF00072 Response regulator receiver domain RIMD111065_34360 PF01590 GAF domain RIMD111065_34360 PF00989 PAS fold RIMD111065_34360 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_34360 PF00563 EAL domain RIMD111065_34370 PF01136 Peptidase family U32 RIMD111065_34370 PF16325 Peptidase family U32 C-terminal domain RIMD111065_34380 PF12838 4Fe-4S dicluster domain RIMD111065_34390 PF01168 Alanine racemase, N-terminal domain RIMD111065_34390 PF00842 Alanine racemase, C-terminal domain RIMD111065_34400 PF00772 DnaB-like helicase N terminal domain RIMD111065_34400 PF03796 DnaB-like helicase C terminal domain RIMD111065_34420 PF12792 CSS motif domain associated with EAL RIMD111065_34420 PF00563 EAL domain RIMD111065_34430 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_34430 PF00149 Calcineurin-like phosphoesterase RIMD111065_34470 PF00158 Sigma-54 interaction domain RIMD111065_34470 PF00072 Response regulator receiver domain RIMD111065_34470 PF02954 Bacterial regulatory protein, Fis family RIMD111065_34480 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase RIMD111065_34480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_34500 PF04102 SlyX RIMD111065_34510 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_34520 PF09526 Probable metal-binding protein (DUF2387) RIMD111065_34540 PF00072 Response regulator receiver domain RIMD111065_34540 PF01584 CheW-like domain RIMD111065_34550 PF00561 alpha/beta hydrolase fold RIMD111065_34560 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_34560 PF00563 EAL domain RIMD111065_34560 PF01590 GAF domain RIMD111065_34560 PF00360 Phytochrome region RIMD111065_34570 PF06794 Uncharacterised protein family (UPF0270) RIMD111065_34580 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain RIMD111065_34580 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain RIMD111065_34580 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain RIMD111065_34590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family RIMD111065_34600 PF00535 Glycosyl transferase family 2 RIMD111065_34610 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_34610 PF00551 Formyl transferase RIMD111065_34610 PF02911 Formyl transferase, C-terminal domain RIMD111065_34620 PF01522 Polysaccharide deacetylase RIMD111065_34630 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase RIMD111065_34640 PF00892 EamA-like transporter family RIMD111065_34650 PF00893 Small Multidrug Resistance protein RIMD111065_34660 PF00485 Phosphoribulokinase / Uridine kinase family RIMD111065_34690 PF02566 OsmC-like protein RIMD111065_34700 PF13545 Crp-like helix-turn-helix domain RIMD111065_34700 PF00027 Cyclic nucleotide-binding domain RIMD111065_34710 PF13847 Methyltransferase domain RIMD111065_34720 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RIMD111065_34720 PF18416 N-acetylglucosamine binding protein domain 2 RIMD111065_34730 PF17945 Beta/Gamma crystallin RIMD111065_34730 PF12561 ToxR activated gene A lipoprotein domain RIMD111065_34740 PF00704 Glycosyl hydrolases family 18 RIMD111065_34740 PF08329 Chitinase A, N-terminal domain RIMD111065_34750 PF00989 PAS fold RIMD111065_34750 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_34750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_34770 PF13443 Cro/C1-type HTH DNA-binding domain RIMD111065_34780 PF12832 MFS_1 like family RIMD111065_34790 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_34790 PF00593 TonB dependent receptor RIMD111065_34830 PF01243 Pyridoxamine 5'-phosphate oxidase RIMD111065_34840 PF06228 Haem utilisation ChuX/HutX RIMD111065_34860 PF01032 FecCD transport family RIMD111065_34870 PF00005 ABC transporter RIMD111065_34890 PF01370 NAD dependent epimerase/dehydratase family RIMD111065_34910 PF01791 DeoC/LacD family aldolase RIMD111065_34920 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_34920 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_34920 PF07670 Nucleoside recognition RIMD111065_34930 PF01048 Phosphorylase superfamily RIMD111065_34940 PF03466 LysR substrate binding domain RIMD111065_34940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_34980 PF01464 Transglycosylase SLT domain RIMD111065_34990 PF01048 Phosphorylase superfamily RIMD111065_35020 PF12848 ABC transporter RIMD111065_35020 PF00005 ABC transporter RIMD111065_35050 PF00860 Permease family RIMD111065_35060 PF05099 Tellurite resistance protein TerB RIMD111065_35060 PF00226 DnaJ domain RIMD111065_35070 PF00483 Nucleotidyl transferase RIMD111065_35080 PF01636 Phosphotransferase enzyme family RIMD111065_35090 PF03968 OstA-like protein RIMD111065_35090 PF04453 LPS transport system D RIMD111065_35100 PF09312 SurA N-terminal domain RIMD111065_35100 PF00639 PPIC-type PPIASE domain RIMD111065_35110 PF04166 Pyridoxal phosphate biosynthetic protein PdxA RIMD111065_35120 PF00398 Ribosomal RNA adenine dimethylase RIMD111065_35130 PF04379 ApaG domain RIMD111065_35140 PF00149 Calcineurin-like phosphoesterase RIMD111065_35160 PF00296 Luciferase-like monooxygenase RIMD111065_35200 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_35200 PF00501 AMP-binding enzyme RIMD111065_35210 PF07670 Nucleoside recognition RIMD111065_35220 PF01926 50S ribosome-binding GTPase RIMD111065_35220 PF01018 GTP1/OBG RIMD111065_35230 PF01016 Ribosomal L27 protein RIMD111065_35240 PF00829 Ribosomal prokaryotic L21 protein RIMD111065_35250 PF00348 Polyprenyl synthetase RIMD111065_35260 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) RIMD111065_35270 PF01145 SPFH domain / Band 7 family RIMD111065_35280 PF01145 SPFH domain / Band 7 family RIMD111065_35280 PF12221 Bacterial membrane protein N terminal RIMD111065_35290 PF01926 50S ribosome-binding GTPase RIMD111065_35290 PF13167 GTP-binding GTPase N-terminal RIMD111065_35290 PF16360 GTP-binding GTPase Middle Region RIMD111065_35300 PF17209 Hfq protein RIMD111065_35320 PF01119 DNA mismatch repair protein, C-terminal domain RIMD111065_35320 PF08676 MutL C terminal dimerisation domain RIMD111065_35330 PF01520 N-acetylmuramoyl-L-alanine amidase RIMD111065_35340 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE RIMD111065_35350 PF01256 Carbohydrate kinase RIMD111065_35350 PF03853 YjeF-related protein N-terminus RIMD111065_35360 PF08331 Domain of unknown function (DUF1730) RIMD111065_35370 PF00480 ROK family RIMD111065_35390 PF00005 ABC transporter RIMD111065_35390 PF09383 NIL domain RIMD111065_35400 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_35410 PF03180 NLPA lipoprotein RIMD111065_35420 PF02357 Transcription termination factor nusG RIMD111065_35430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_35430 PF00672 HAMP domain RIMD111065_35430 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_35440 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_35440 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_35440 PF00563 EAL domain RIMD111065_35450 PF00072 Response regulator receiver domain RIMD111065_35450 PF09456 RcsC Alpha-Beta-Loop (ABL) RIMD111065_35450 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_35450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_35470 PF13286 Phosphohydrolase-associated domain RIMD111065_35470 PF01966 HD domain RIMD111065_35480 PF01627 Hpt domain RIMD111065_35480 PF00072 Response regulator receiver domain RIMD111065_35480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_35480 PF00989 PAS fold RIMD111065_35480 PF18415 Histidine kinase receptor ArcB trans-membrane domain RIMD111065_35480 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_35520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) RIMD111065_35530 PF03466 LysR substrate binding domain RIMD111065_35530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_35550 PF01259 SAICAR synthetase RIMD111065_35560 PF06804 NlpB/DapX lipoprotein RIMD111065_35570 PF00701 Dihydrodipicolinate synthetase family RIMD111065_35580 PF01842 ACT domain RIMD111065_35590 PF00578 AhpC/TSA family RIMD111065_35600 PF03887 YfbU domain RIMD111065_35610 PF04217 Protein of unknown function, DUF412 RIMD111065_35620 PF00871 Acetokinase family RIMD111065_35630 PF07085 DRTGG domain RIMD111065_35630 PF01515 Phosphate acetyl/butaryl transferase RIMD111065_35640 PF10369 Small subunit of acetolactate synthase RIMD111065_35650 PF00205 Thiamine pyrophosphate enzyme, central domain RIMD111065_35650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_35650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_35670 PF04101 Glycosyltransferase family 28 C-terminal domain RIMD111065_35670 PF03033 Glycosyltransferase family 28 N-terminal domain RIMD111065_35680 PF01569 PAP2 superfamily RIMD111065_35700 PF08502 LeuA allosteric (dimerisation) domain RIMD111065_35700 PF00682 HMGL-like RIMD111065_35710 PF00180 Isocitrate/isopropylmalate dehydrogenase RIMD111065_35720 PF00330 Aconitase family (aconitate hydratase) RIMD111065_35730 PF00694 Aconitase C-terminal domain RIMD111065_35770 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_35780 PF00005 ABC transporter RIMD111065_35790 PF13638 PIN domain RIMD111065_35790 PF02562 PhoH-like protein RIMD111065_35810 PF02867 Ribonucleotide reductase, barrel domain RIMD111065_35810 PF08343 Ribonucleotide reductase N-terminal RIMD111065_35810 PF00317 Ribonucleotide reductase, all-alpha domain RIMD111065_35830 PF00271 Helicase conserved C-terminal domain RIMD111065_35830 PF12137 RNA polymerase recycling family C-terminal RIMD111065_35830 PF00176 SNF2 family N-terminal domain RIMD111065_35830 PF18339 RapA N-terminal Tudor like domain 1 RIMD111065_35830 PF18337 RapA N-terminal Tudor like domain RIMD111065_35840 PF00849 RNA pseudouridylate synthase RIMD111065_35860 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_35860 PF00563 EAL domain RIMD111065_35860 PF13188 PAS domain RIMD111065_35860 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_35880 PF00118 TCP-1/cpn60 chaperonin family RIMD111065_35890 PF00166 Chaperonin 10 Kd subunit RIMD111065_35900 PF01554 MatE RIMD111065_35910 PF04186 FxsA cytoplasmic membrane protein RIMD111065_35920 PF10415 Fumarase C C-terminus RIMD111065_35920 PF00206 Lyase RIMD111065_35930 PF03605 Anaerobic c4-dicarboxylate membrane transporter RIMD111065_35940 PF00267 Gram-negative porin RIMD111065_35960 PF07690 Major Facilitator Superfamily RIMD111065_35970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_35970 PF03466 LysR substrate binding domain RIMD111065_35980 PF03413 Peptidase propeptide and YPEB domain RIMD111065_35980 PF07504 Fungalysin/Thermolysin Propeptide Motif RIMD111065_35980 PF01447 Thermolysin metallopeptidase, catalytic domain RIMD111065_35980 PF04151 Bacterial pre-peptidase C-terminal domain RIMD111065_35980 PF02868 Thermolysin metallopeptidase, alpha-helical domain RIMD111065_35990 PF13302 Acetyltransferase (GNAT) domain RIMD111065_36000 PF13302 Acetyltransferase (GNAT) domain RIMD111065_36020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold RIMD111065_36020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain RIMD111065_36030 PF07690 Major Facilitator Superfamily RIMD111065_36040 PF01725 Ham1 family RIMD111065_36050 PF04055 Radical SAM superfamily RIMD111065_36050 PF06969 HemN C-terminal domain RIMD111065_36060 PF03889 Alternative ribosome-rescue factor A RIMD111065_36080 PF13411 MerR HTH family regulatory protein RIMD111065_36090 PF02142 MGS-like domain RIMD111065_36090 PF01808 AICARFT/IMPCHase bienzyme RIMD111065_36100 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain RIMD111065_36100 PF02844 Phosphoribosylglycinamide synthetase, N domain RIMD111065_36100 PF02843 Phosphoribosylglycinamide synthetase, C domain RIMD111065_36130 PF00128 Alpha amylase, catalytic domain RIMD111065_36140 PF04539 Sigma-70 region 3 RIMD111065_36140 PF04542 Sigma-70 region 2 RIMD111065_36140 PF00140 Sigma-70 factor, region 1.2 RIMD111065_36140 PF04545 Sigma-70, region 4 RIMD111065_36140 PF03979 Sigma-70 factor, region 1.1 RIMD111065_36140 PF04546 Sigma-70, non-essential region RIMD111065_36150 PF01807 CHC2 zinc finger RIMD111065_36150 PF10410 DnaB-helicase binding domain of primase RIMD111065_36150 PF08275 DNA primase catalytic core, N-terminal domain RIMD111065_36150 PF08278 DNA primase DnaG DnaB-binding RIMD111065_36160 PF09424 Yqey-like protein RIMD111065_36170 PF01165 Ribosomal protein S21 RIMD111065_36180 PF00814 Glycoprotease family RIMD111065_36190 PF04539 Sigma-70 region 3 RIMD111065_36190 PF04545 Sigma-70, region 4 RIMD111065_36190 PF00140 Sigma-70 factor, region 1.2 RIMD111065_36190 PF04542 Sigma-70 region 2 RIMD111065_36200 PF01551 Peptidase family M23 RIMD111065_36200 PF01476 LysM domain RIMD111065_36210 PF09335 SNARE associated Golgi protein RIMD111065_36230 PF01975 Survival protein SurE RIMD111065_36240 PF01142 tRNA pseudouridine synthase D (TruD) RIMD111065_36250 PF02542 YgbB family RIMD111065_36260 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase RIMD111065_36270 PF04977 Septum formation initiator RIMD111065_36280 PF03952 Enolase, N-terminal domain RIMD111065_36280 PF00113 Enolase, C-terminal TIM barrel domain RIMD111065_36290 PF00117 Glutamine amidotransferase class-I RIMD111065_36290 PF06418 CTP synthase N-terminus RIMD111065_36300 PF03819 MazG nucleotide pyrophosphohydrolase domain RIMD111065_36310 PF13291 ACT domain RIMD111065_36310 PF02824 TGS domain RIMD111065_36310 PF04607 Region found in RelA / SpoT proteins RIMD111065_36320 PF01938 TRAM domain RIMD111065_36320 PF05958 tRNA (Uracil-5-)-methyltransferase RIMD111065_36330 PF00672 HAMP domain RIMD111065_36330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_36330 PF00072 Response regulator receiver domain RIMD111065_36330 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_36330 PF01627 Hpt domain RIMD111065_36330 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_36340 PF07308 Protein of unknown function (DUF1456) RIMD111065_36350 PF01510 N-acetylmuramoyl-L-alanine amidase RIMD111065_36370 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ RIMD111065_36380 PF11967 Recombination protein O N terminal RIMD111065_36380 PF02565 Recombination protein O C terminal RIMD111065_36390 PF07650 KH domain RIMD111065_36390 PF01926 50S ribosome-binding GTPase RIMD111065_36400 PF14622 Ribonuclease-III-like RIMD111065_36400 PF00035 Double-stranded RNA binding motif RIMD111065_36410 PF10502 Signal peptidase, peptidase S26 RIMD111065_36420 PF00679 Elongation factor G C-terminus RIMD111065_36420 PF00009 Elongation factor Tu GTP binding domain RIMD111065_36420 PF03144 Elongation factor Tu domain 2 RIMD111065_36420 PF06421 GTP-binding protein LepA C-terminus RIMD111065_36440 PF17188 MucB/RseB C-terminal domain RIMD111065_36440 PF03888 MucB/RseB N-terminal domain RIMD111065_36450 PF03872 Anti sigma-E protein RseA, N-terminal domain RIMD111065_36450 PF03873 Anti sigma-E protein RseA, C-terminal domain RIMD111065_36460 PF04542 Sigma-70 region 2 RIMD111065_36460 PF08281 Sigma-70, region 4 RIMD111065_36470 PF02910 Fumarate reductase flavoprotein C-term RIMD111065_36470 PF00890 FAD binding domain RIMD111065_36490 PF03937 Flavinator of succinate dehydrogenase RIMD111065_36500 PF01571 Aminomethyltransferase folate-binding domain RIMD111065_36510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_36510 PF03466 LysR substrate binding domain RIMD111065_36540 PF03091 CutA1 divalent ion tolerance protein RIMD111065_36550 PF11412 Disulphide bond corrector protein DsbC RIMD111065_36550 PF02683 Cytochrome C biogenesis protein transmembrane region RIMD111065_36570 PF01266 FAD dependent oxidoreductase RIMD111065_36580 PF01116 Fructose-bisphosphate aldolase class-II RIMD111065_36590 PF00162 Phosphoglycerate kinase RIMD111065_36600 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain RIMD111065_36600 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain RIMD111065_36610 PF00480 ROK family RIMD111065_36620 PF01208 Uroporphyrinogen decarboxylase (URO-D) RIMD111065_36630 PF09297 NADH pyrophosphatase zinc ribbon domain RIMD111065_36630 PF00293 NUDIX domain RIMD111065_36640 PF01619 Proline dehydrogenase RIMD111065_36640 PF14850 DNA-binding domain of Proline dehydrogenase RIMD111065_36640 PF00171 Aldehyde dehydrogenase family RIMD111065_36640 PF18327 Proline utilization A proline dehydrogenase N-terminal domain RIMD111065_36650 PF08239 Bacterial SH3 domain RIMD111065_36660 PF00520 Ion transport protein RIMD111065_36660 PF00027 Cyclic nucleotide-binding domain RIMD111065_36670 PF02743 Cache domain RIMD111065_36670 PF00672 HAMP domain RIMD111065_36670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_36690 PF03710 Glutamate-ammonia ligase adenylyltransferase RIMD111065_36690 PF08335 GlnD PII-uridylyltransferase RIMD111065_36740 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_36740 PF00326 Prolyl oligopeptidase family RIMD111065_36750 PF00291 Pyridoxal-phosphate dependent enzyme RIMD111065_36760 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_36770 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_36780 PF00005 ABC transporter RIMD111065_36790 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_36800 PF12704 MacB-like periplasmic core domain RIMD111065_36800 PF02687 FtsX-like permease family RIMD111065_36800 PF00005 ABC transporter RIMD111065_36810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion RIMD111065_36820 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_36820 PF00072 Response regulator receiver domain RIMD111065_36830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_36830 PF16527 Two-component sensor protein CpxA, periplasmic domain RIMD111065_36830 PF00672 HAMP domain RIMD111065_36830 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_36840 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain RIMD111065_36840 PF00293 NUDIX domain RIMD111065_36840 PF09297 NADH pyrophosphatase zinc ribbon domain RIMD111065_36850 PF03060 Nitronate monooxygenase RIMD111065_36870 PF00445 Ribonuclease T2 family RIMD111065_36900 PF03150 Di-haem cytochrome c peroxidase RIMD111065_36910 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase RIMD111065_36950 PF03466 LysR substrate binding domain RIMD111065_36950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_36960 PF00270 DEAD/DEAH box helicase RIMD111065_36960 PF00271 Helicase conserved C-terminal domain RIMD111065_36980 PF00753 Metallo-beta-lactamase superfamily RIMD111065_37000 PF01425 Amidase RIMD111065_37010 PF04371 Porphyromonas-type peptidyl-arginine deiminase RIMD111065_37020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_37020 PF03466 LysR substrate binding domain RIMD111065_37040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family RIMD111065_37050 PF00583 Acetyltransferase (GNAT) family RIMD111065_37090 PF16658 Class II release factor RF3, C-terminal domain RIMD111065_37090 PF00009 Elongation factor Tu GTP binding domain RIMD111065_37090 PF03144 Elongation factor Tu domain 2 RIMD111065_37100 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_37100 PF00072 Response regulator receiver domain RIMD111065_37110 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_37110 PF00563 EAL domain RIMD111065_37110 PF13188 PAS domain RIMD111065_37110 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_37120 PF05762 VWA domain containing CoxE-like protein RIMD111065_37130 PF12592 Protein of unknown function (DUF3763) RIMD111065_37130 PF17868 AAA lid domain RIMD111065_37130 PF07728 AAA domain (dynein-related subfamily) RIMD111065_37150 PF00583 Acetyltransferase (GNAT) family RIMD111065_37170 PF00501 AMP-binding enzyme RIMD111065_37190 PF04262 Glutamate-cysteine ligase RIMD111065_37200 PF05193 Peptidase M16 inactive domain RIMD111065_37200 PF00675 Insulinase (Peptidase family M16) RIMD111065_37210 PF09335 SNARE associated Golgi protein RIMD111065_37220 PF14765 Polyketide synthase dehydratase RIMD111065_37220 PF16197 Ketoacyl-synthetase C-terminal extension RIMD111065_37220 PF00109 Beta-ketoacyl synthase, N-terminal domain RIMD111065_37220 PF00698 Acyl transferase domain RIMD111065_37220 PF08990 Erythronolide synthase docking RIMD111065_37220 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_37220 PF02801 Beta-ketoacyl synthase, C-terminal domain RIMD111065_37220 PF08659 KR domain RIMD111065_37220 PF00550 Phosphopantetheine attachment site RIMD111065_37260 PF00175 Oxidoreductase NAD-binding domain RIMD111065_37260 PF00970 Oxidoreductase FAD-binding domain RIMD111065_37270 PF01281 Ribosomal protein L9, N-terminal domain RIMD111065_37270 PF03948 Ribosomal protein L9, C-terminal domain RIMD111065_37280 PF01084 Ribosomal protein S18 RIMD111065_37290 PF01250 Ribosomal protein S6 RIMD111065_37300 PF01566 Natural resistance-associated macrophage protein RIMD111065_37350 PF13673 Acetyltransferase (GNAT) domain RIMD111065_37380 PF00588 SpoU rRNA Methylase family RIMD111065_37380 PF08032 RNA 2'-O ribose methyltransferase substrate binding RIMD111065_37390 PF08461 Ribonuclease R winged-helix domain RIMD111065_37390 PF00773 RNB domain RIMD111065_37390 PF17876 Cold shock domain RIMD111065_37390 PF00575 S1 RNA binding domain RIMD111065_37390 PF08206 Ribonuclease B OB domain RIMD111065_37400 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_37410 PF02664 S-Ribosylhomocysteinase (LuxS) RIMD111065_37430 PF00543 Nitrogen regulatory protein P-II RIMD111065_37440 PF02540 NAD synthase RIMD111065_37440 PF00795 Carbon-nitrogen hydrolase RIMD111065_37510 PF05567 Neisseria PilC beta-propeller domain RIMD111065_37560 PF02401 LytB protein RIMD111065_37570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase RIMD111065_37580 PF01252 Signal peptidase (SPase) II RIMD111065_37590 PF06827 Zinc finger found in FPG and IleRS RIMD111065_37590 PF08264 Anticodon-binding domain of tRNA RIMD111065_37590 PF00133 tRNA synthetases class I (I, L, M and V) RIMD111065_37600 PF01687 Riboflavin kinase RIMD111065_37600 PF06574 FAD synthetase RIMD111065_37610 PF03023 Lipid II flippase MurJ RIMD111065_37620 PF01649 Ribosomal protein S20 RIMD111065_37630 PF01022 Bacterial regulatory protein, arsR family RIMD111065_37640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_37640 PF03466 LysR substrate binding domain RIMD111065_37660 PF06965 Na+/H+ antiporter 1 RIMD111065_37670 PF00303 Thymidylate synthase RIMD111065_37680 PF01790 Prolipoprotein diacylglyceryl transferase RIMD111065_37690 PF01590 GAF domain RIMD111065_37690 PF05524 PEP-utilising enzyme, N-terminal RIMD111065_37690 PF00391 PEP-utilising enzyme, mobile domain RIMD111065_37690 PF02896 PEP-utilising enzyme, TIM barrel domain RIMD111065_37700 PF00293 NUDIX domain RIMD111065_37710 PF02976 DNA mismatch repair enzyme MutH RIMD111065_37730 PF01245 Ribosomal protein L19 RIMD111065_37740 PF01746 tRNA (Guanine-1)-methyltransferase RIMD111065_37750 PF05239 PRC-barrel domain RIMD111065_37750 PF01782 RimM N-terminal domain RIMD111065_37760 PF00886 Ribosomal protein S16 RIMD111065_37770 PF02978 Signal peptide binding domain RIMD111065_37770 PF00448 SRP54-type protein, GTPase domain RIMD111065_37770 PF02881 SRP54-type protein, helical bundle domain RIMD111065_37780 PF01578 Cytochrome C assembly protein RIMD111065_37790 PF01595 Cyclin M transmembrane N-terminal domain RIMD111065_37790 PF03471 Transporter associated domain RIMD111065_37790 PF00571 CBS domain RIMD111065_37800 PF02082 Transcriptional regulator RIMD111065_37810 PF00042 Globin RIMD111065_37810 PF00970 Oxidoreductase FAD-binding domain RIMD111065_37810 PF00175 Oxidoreductase NAD-binding domain RIMD111065_37820 PF08238 Sel1 repeat RIMD111065_37840 PF00056 lactate/malate dehydrogenase, NAD binding domain RIMD111065_37840 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain RIMD111065_37850 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_37860 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_37870 PF00497 Bacterial extracellular solute-binding proteins, family 3 RIMD111065_37880 PF00005 ABC transporter RIMD111065_37890 PF02863 Arginine repressor, C-terminal domain RIMD111065_37890 PF01316 Arginine repressor, DNA binding domain RIMD111065_37900 PF04261 Dyp-type peroxidase family RIMD111065_37910 PF08402 TOBE domain RIMD111065_37910 PF00005 ABC transporter RIMD111065_37930 PF13416 Bacterial extracellular solute-binding protein RIMD111065_37940 PF00543 Nitrogen regulatory protein P-II RIMD111065_37950 PF00472 RF-1 domain RIMD111065_37960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain RIMD111065_37960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain RIMD111065_37970 PF07670 Nucleoside recognition RIMD111065_37970 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_37970 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_37980 PF03466 LysR substrate binding domain RIMD111065_37980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_37990 PF00255 Glutathione peroxidase RIMD111065_38010 PF02595 Glycerate kinase family RIMD111065_38020 PF02447 GntP family permease RIMD111065_38030 PF13556 PucR C-terminal helix-turn-helix domain RIMD111065_38030 PF05651 Putative sugar diacid recognition RIMD111065_38030 PF17853 GGDEF-like domain RIMD111065_38040 PF06062 Uncharacterised protein family (UPF0231) RIMD111065_38070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_38070 PF08447 PAS fold RIMD111065_38080 PF03372 Endonuclease/Exonuclease/phosphatase family RIMD111065_38110 PF00270 DEAD/DEAH box helicase RIMD111065_38110 PF00271 Helicase conserved C-terminal domain RIMD111065_38130 PF08534 Redoxin RIMD111065_38150 PF00403 Heavy-metal-associated domain RIMD111065_38160 PF11852 Domain of unknown function (DUF3372) RIMD111065_38160 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) RIMD111065_38160 PF03714 Bacterial pullanase-associated domain RIMD111065_38160 PF18494 Pullulanase Ins domain RIMD111065_38160 PF17967 Pullulanase N2 domain RIMD111065_38190 PF02583 Metal-sensitive transcriptional repressor RIMD111065_38200 PF00155 Aminotransferase class I and II RIMD111065_38210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_38210 PF03466 LysR substrate binding domain RIMD111065_38230 PF04055 Radical SAM superfamily RIMD111065_38240 PF11230 Protein of unknown function (DUF3029) RIMD111065_38280 PF14685 Tricorn protease PDZ domain RIMD111065_38280 PF03572 Peptidase family S41 RIMD111065_38280 PF14684 Tricorn protease C1 domain RIMD111065_38280 PF07676 WD40-like Beta Propeller Repeat RIMD111065_38360 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_38360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_38360 PF00672 HAMP domain RIMD111065_38370 PF18416 N-acetylglucosamine binding protein domain 2 RIMD111065_38370 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading RIMD111065_38380 PF03466 LysR substrate binding domain RIMD111065_38380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_38390 PF12857 TOBE-like domain RIMD111065_38390 PF00005 ABC transporter RIMD111065_38400 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_38410 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_38440 PF13194 Domain of unknown function (DUF4010) RIMD111065_38450 PF12464 Maltose acetyltransferase RIMD111065_38450 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_38500 PF02463 RecF/RecN/SMC N terminal domain RIMD111065_38520 PF14698 Argininosuccinate lyase C-terminal RIMD111065_38520 PF00206 Lyase RIMD111065_38530 PF00764 Arginosuccinate synthase RIMD111065_38540 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain RIMD111065_38540 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain RIMD111065_38550 PF00696 Amino acid kinase family RIMD111065_38560 PF02774 Semialdehyde dehydrogenase, dimerisation domain RIMD111065_38560 PF01118 Semialdehyde dehydrogenase, NAD binding domain RIMD111065_38570 PF07687 Peptidase dimerisation domain RIMD111065_38570 PF01546 Peptidase family M20/M25/M40 RIMD111065_38580 PF00311 Phosphoenolpyruvate carboxylase RIMD111065_38600 PF00696 Amino acid kinase family RIMD111065_38600 PF03447 Homoserine dehydrogenase, NAD binding domain RIMD111065_38600 PF00742 Homoserine dehydrogenase RIMD111065_38610 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_38620 PF01340 Met Apo-repressor, MetJ RIMD111065_38640 PF01588 Putative tRNA binding domain RIMD111065_38650 PF03222 Tryptophan/tyrosine permease family RIMD111065_38660 PF00459 Inositol monophosphatase family RIMD111065_38670 PF00293 NUDIX domain RIMD111065_38680 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_38690 PF01479 S4 domain RIMD111065_38690 PF00579 tRNA synthetases class I (W and Y) RIMD111065_38700 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_38710 PF01203 Type II secretion system (T2SS), protein N RIMD111065_38720 PF04612 Type II secretion system (T2SS), protein M RIMD111065_38730 PF05134 Type II secretion system (T2SS), protein L RIMD111065_38730 PF12693 GspL periplasmic domain RIMD111065_38740 PF03934 Type II secretion system (T2SS), protein K RIMD111065_38750 PF11612 Type II secretion system (T2SS), protein J RIMD111065_38750 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_38760 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_38760 PF02501 Type II secretion system (T2SS), protein I RIMD111065_38770 PF12019 Type II transport protein GspH RIMD111065_38770 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_38780 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_38780 PF08334 Type II secretion system (T2SS), protein G RIMD111065_38790 PF00482 Type II secretion system (T2SS), protein F RIMD111065_38800 PF00437 Type II/IV secretion system protein RIMD111065_38810 PF03958 Bacterial type II/III secretion system short domain RIMD111065_38810 PF00263 Bacterial type II and III secretion system protein RIMD111065_38820 PF11356 Type II secretion system protein C RIMD111065_38830 PF01479 S4 domain RIMD111065_38840 PF01430 Hsp33 protein RIMD111065_38850 PF01293 Phosphoenolpyruvate carboxykinase RIMD111065_38860 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_38870 PF01321 Creatinase/Prolidase N-terminal domain RIMD111065_38870 PF00557 Metallopeptidase family M24 RIMD111065_38880 PF11756 Nitrous oxide-stimulated promoter RIMD111065_38890 PF00583 Acetyltransferase (GNAT) family RIMD111065_38900 PF05433 Glycine zipper 2TM domain RIMD111065_38910 PF02872 5'-nucleotidase, C-terminal domain RIMD111065_38910 PF00149 Calcineurin-like phosphoesterase RIMD111065_38920 PF01810 LysE type translocator RIMD111065_38930 PF03472 Autoinducer binding domain RIMD111065_38930 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_38940 PF00765 Autoinducer synthase RIMD111065_38950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_38950 PF03466 LysR substrate binding domain RIMD111065_38960 PF17876 Cold shock domain RIMD111065_38960 PF00773 RNB domain RIMD111065_38960 PF08206 Ribonuclease B OB domain RIMD111065_38970 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_38990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit RIMD111065_38990 PF02378 Phosphotransferase system, EIIC RIMD111065_38990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_39000 PF08125 Mannitol dehydrogenase C-terminal domain RIMD111065_39000 PF01232 Mannitol dehydrogenase Rossmann domain RIMD111065_39010 PF05068 Mannitol repressor RIMD111065_39020 PF02080 TrkA-C domain RIMD111065_39020 PF00999 Sodium/hydrogen exchanger family RIMD111065_39020 PF03471 Transporter associated domain RIMD111065_39060 PF01544 CorA-like Mg2+ transporter protein RIMD111065_39070 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 RIMD111065_39100 PF04307 LexA-binding, inner membrane-associated putative hydrolase RIMD111065_39110 PF07670 Nucleoside recognition RIMD111065_39110 PF01773 Na+ dependent nucleoside transporter N-terminus RIMD111065_39110 PF07662 Na+ dependent nucleoside transporter C-terminus RIMD111065_39120 PF00271 Helicase conserved C-terminal domain RIMD111065_39120 PF00270 DEAD/DEAH box helicase RIMD111065_39120 PF03880 DbpA RNA binding domain RIMD111065_39170 PF01040 UbiA prenyltransferase family RIMD111065_39180 PF00425 chorismate binding enzyme RIMD111065_39190 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain RIMD111065_39190 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain RIMD111065_39190 PF16582 Middle domain of thiamine pyrophosphate RIMD111065_39200 PF12697 Alpha/beta hydrolase family RIMD111065_39210 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_39220 PF13378 Enolase C-terminal domain-like RIMD111065_39230 PF00501 AMP-binding enzyme RIMD111065_39250 PF00419 Fimbrial protein RIMD111065_39260 PF00419 Fimbrial protein RIMD111065_39270 PF02753 Pili assembly chaperone PapD, C-terminal domain RIMD111065_39270 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain RIMD111065_39280 PF00577 Outer membrane usher protein RIMD111065_39280 PF13954 PapC N-terminal domain RIMD111065_39280 PF13953 PapC C-terminal domain RIMD111065_39300 PF00419 Fimbrial protein RIMD111065_39320 PF08453 Peptidase family M9 N-terminal RIMD111065_39320 PF01752 Collagenase RIMD111065_39330 PF02698 DUF218 domain RIMD111065_39340 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain RIMD111065_39340 PF02777 Iron/manganese superoxide dismutases, C-terminal domain RIMD111065_39360 PF00561 alpha/beta hydrolase fold RIMD111065_39370 PF03280 Proteobacterial lipase chaperone protein RIMD111065_39400 PF12793 Sugar transport-related sRNA regulator N-term RIMD111065_39400 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle RIMD111065_39420 PF01053 Cys/Met metabolism PLP-dependent enzyme RIMD111065_39440 PF00465 Iron-containing alcohol dehydrogenase RIMD111065_39470 PF03577 Peptidase family C69 RIMD111065_39480 PF00106 short chain dehydrogenase RIMD111065_39520 PF02308 MgtC family RIMD111065_39530 PF00128 Alpha amylase, catalytic domain RIMD111065_39530 PF16657 Maltogenic Amylase, C-terminal domain RIMD111065_39530 PF02903 Alpha amylase, N-terminal ig-like domain RIMD111065_39560 PF00884 Sulfatase RIMD111065_39570 PF01037 Lrp/AsnC ligand binding domain RIMD111065_39590 PF04204 Homoserine O-succinyltransferase RIMD111065_39600 PF12072 Domain of unknown function (DUF3552) RIMD111065_39600 PF01966 HD domain RIMD111065_39600 PF00013 KH domain RIMD111065_39610 PF02464 Competence-damaged protein RIMD111065_39610 PF00994 Probable molybdopterin binding domain RIMD111065_39630 PF00005 ABC transporter RIMD111065_39670 PF07722 Peptidase C26 RIMD111065_39690 PF13545 Crp-like helix-turn-helix domain RIMD111065_39690 PF00027 Cyclic nucleotide-binding domain RIMD111065_39710 PF13419 Haloacid dehalogenase-like hydrolase RIMD111065_39720 PF00589 Phage integrase family RIMD111065_39720 PF02899 Phage integrase, N-terminal SAM-like domain RIMD111065_39740 PF01678 Diaminopimelate epimerase RIMD111065_39750 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain RIMD111065_39750 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain RIMD111065_39760 PF01491 Frataxin-like domain RIMD111065_39770 PF02230 Phospholipase/Carboxylesterase RIMD111065_39780 PF12633 Adenylate cyclase NT domain RIMD111065_39780 PF01295 Adenylate cyclase, class-I RIMD111065_39790 PF03900 Porphobilinogen deaminase, C-terminal domain RIMD111065_39790 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain RIMD111065_39800 PF02602 Uroporphyrinogen-III synthase HemD RIMD111065_39810 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase RIMD111065_39830 PF03692 Putative zinc- or iron-chelating domain RIMD111065_39840 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded RIMD111065_39870 PF00593 TonB dependent receptor RIMD111065_39870 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_39920 PF01638 HxlR-like helix-turn-helix RIMD111065_39930 PF08803 Putative mono-oxygenase ydhR RIMD111065_39960 PF06055 Exopolysaccharide synthesis, ExoD RIMD111065_39980 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_39980 PF17151 Periplasmic sensor domain RIMD111065_40010 PF13036 Peptidoglycan-synthase activator LpoB RIMD111065_40020 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_40060 PF04055 Radical SAM superfamily RIMD111065_40060 PF06968 Biotin and Thiamin Synthesis associated domain RIMD111065_40070 PF05690 Thiazole biosynthesis protein ThiG RIMD111065_40090 PF00899 ThiF family RIMD111065_40100 PF02581 Thiamine monophosphate synthase RIMD111065_40110 PF13667 ThiC-associated domain RIMD111065_40110 PF01964 Radical SAM ThiC family RIMD111065_40120 PF01117 Aerolysin toxin RIMD111065_40120 PF03440 Aerolysin/Pertussis toxin (APT) domain RIMD111065_40150 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_40150 PF00072 Response regulator receiver domain RIMD111065_40160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_40170 PF05525 Branched-chain amino acid transport protein RIMD111065_40180 PF18030 RimK PreATP-grasp domain RIMD111065_40180 PF08443 RimK-like ATP-grasp domain RIMD111065_40190 PF02607 B12 binding domain RIMD111065_40190 PF02965 Vitamin B12 dependent methionine synthase, activation domain RIMD111065_40190 PF02574 Homocysteine S-methyltransferase RIMD111065_40190 PF00809 Pterin binding enzyme RIMD111065_40190 PF02310 B12 binding domain RIMD111065_40200 PF00999 Sodium/hydrogen exchanger family RIMD111065_40230 PF08668 HDOD domain RIMD111065_40250 PF04228 Putative neutral zinc metallopeptidase RIMD111065_40260 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) RIMD111065_40290 PF13426 PAS domain RIMD111065_40290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_40290 PF08447 PAS fold RIMD111065_40310 PF13581 Histidine kinase-like ATPase domain RIMD111065_40320 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) RIMD111065_40320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_40320 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_40320 PF01627 Hpt domain RIMD111065_40320 PF00072 Response regulator receiver domain RIMD111065_40320 PF00672 HAMP domain RIMD111065_40330 PF00072 Response regulator receiver domain RIMD111065_40350 PF07690 Major Facilitator Superfamily RIMD111065_40360 PF01914 MarC family integral membrane protein RIMD111065_40380 PF13580 SIS domain RIMD111065_40390 PF00367 phosphotransferase system, EIIB RIMD111065_40390 PF02378 Phosphotransferase system, EIIC RIMD111065_40420 PF01380 SIS domain RIMD111065_40420 PF01418 Helix-turn-helix domain, rpiR family RIMD111065_40430 PF01523 Putative modulator of DNA gyrase RIMD111065_40440 PF00795 Carbon-nitrogen hydrolase RIMD111065_40460 PF13502 AsmA-like C-terminal region RIMD111065_40460 PF13116 Protein of unknown function RIMD111065_40470 PF10150 Ribonuclease E/G family RIMD111065_40470 PF00575 S1 RNA binding domain RIMD111065_40480 PF02545 Maf-like protein RIMD111065_40490 PF04093 rod shape-determining protein MreD RIMD111065_40500 PF04085 rod shape-determining protein MreC RIMD111065_40560 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_40560 PF14245 Type IV pilin PilA RIMD111065_40570 PF08334 Type II secretion system (T2SS), protein G RIMD111065_40570 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_40580 PF07963 Prokaryotic N-terminal methylation motif RIMD111065_40600 PF00482 Type II secretion system (T2SS), protein F RIMD111065_40610 PF00437 Type II/IV secretion system protein RIMD111065_40610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain RIMD111065_40640 PF03958 Bacterial type II/III secretion system short domain RIMD111065_40640 PF00263 Bacterial type II and III secretion system protein RIMD111065_40700 PF17157 Gammaproteobacterial periplasmic sensor domain RIMD111065_40700 PF00563 EAL domain RIMD111065_40700 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_40710 PF00563 EAL domain RIMD111065_40710 PF12792 CSS motif domain associated with EAL RIMD111065_40720 PF01699 Sodium/calcium exchanger protein RIMD111065_40730 PF00221 Aromatic amino acid lyase RIMD111065_40740 PF01175 Urocanase Rossmann-like domain RIMD111065_40740 PF17392 Urocanase C-terminal domain RIMD111065_40740 PF17391 Urocanase N-terminal domain RIMD111065_40750 PF00491 Arginase family RIMD111065_40760 PF01979 Amidohydrolase family RIMD111065_40770 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_40770 PF07702 UTRA domain RIMD111065_40780 PF00484 Carbonic anhydrase RIMD111065_40790 PF04545 Sigma-70, region 4 RIMD111065_40790 PF04542 Sigma-70 region 2 RIMD111065_40790 PF00140 Sigma-70 factor, region 1.2 RIMD111065_40800 PF18075 FtsX extracellular domain RIMD111065_40810 PF00005 ABC transporter RIMD111065_40820 PF00448 SRP54-type protein, GTPase domain RIMD111065_40820 PF02881 SRP54-type protein, helical bundle domain RIMD111065_40870 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_40890 PF13091 PLD-like domain RIMD111065_40910 PF01464 Transglycosylase SLT domain RIMD111065_40930 PF02416 mttA/Hcf106 family RIMD111065_40940 PF03466 LysR substrate binding domain RIMD111065_40940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_40950 PF01914 MarC family integral membrane protein RIMD111065_40960 PF10678 Protein of unknown function (DUF2492) RIMD111065_40970 PF00375 Sodium:dicarboxylate symporter family RIMD111065_40990 PF03466 LysR substrate binding domain RIMD111065_40990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_41000 PF13533 Biotin-lipoyl like RIMD111065_41010 PF07690 Major Facilitator Superfamily RIMD111065_41020 PF07947 YhhN family RIMD111065_41070 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain RIMD111065_41070 PF00326 Prolyl oligopeptidase family RIMD111065_41100 PF00106 short chain dehydrogenase RIMD111065_41110 PF03466 LysR substrate binding domain RIMD111065_41110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_41120 PF02525 Flavodoxin-like fold RIMD111065_41130 PF00999 Sodium/hydrogen exchanger family RIMD111065_41130 PF02254 TrkA-N domain RIMD111065_41160 PF01196 Ribosomal protein L17 RIMD111065_41170 PF01000 RNA polymerase Rpb3/RpoA insert domain RIMD111065_41170 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain RIMD111065_41170 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain RIMD111065_41180 PF00163 Ribosomal protein S4/S9 N-terminal domain RIMD111065_41180 PF01479 S4 domain RIMD111065_41190 PF00411 Ribosomal protein S11 RIMD111065_41200 PF00416 Ribosomal protein S13/S18 RIMD111065_41210 PF00344 SecY translocase RIMD111065_41220 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A RIMD111065_41230 PF00327 Ribosomal protein L30p/L7e RIMD111065_41240 PF00333 Ribosomal protein S5, N-terminal domain RIMD111065_41240 PF03719 Ribosomal protein S5, C-terminal domain RIMD111065_41250 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast RIMD111065_41260 PF00347 Ribosomal protein L6 RIMD111065_41270 PF00410 Ribosomal protein S8 RIMD111065_41280 PF00253 Ribosomal protein S14p/S29e RIMD111065_41290 PF00673 ribosomal L5P family C-terminus RIMD111065_41290 PF00281 Ribosomal protein L5 RIMD111065_41300 PF00467 KOW motif RIMD111065_41300 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 RIMD111065_41310 PF00238 Ribosomal protein L14p/L23e RIMD111065_41320 PF00366 Ribosomal protein S17 RIMD111065_41330 PF00831 Ribosomal L29 protein RIMD111065_41340 PF00252 Ribosomal protein L16p/L10e RIMD111065_41350 PF00189 Ribosomal protein S3, C-terminal domain RIMD111065_41350 PF07650 KH domain RIMD111065_41360 PF00237 Ribosomal protein L22p/L17e RIMD111065_41370 PF00203 Ribosomal protein S19 RIMD111065_41380 PF03947 Ribosomal Proteins L2, C-terminal domain RIMD111065_41380 PF00181 Ribosomal Proteins L2, RNA binding domain RIMD111065_41390 PF00276 Ribosomal protein L23 RIMD111065_41400 PF00573 Ribosomal protein L4/L1 family RIMD111065_41410 PF00297 Ribosomal protein L3 RIMD111065_41420 PF00338 Ribosomal protein S10p/S20e RIMD111065_41440 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_41440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_41440 PF00672 HAMP domain RIMD111065_41450 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_41450 PF00072 Response regulator receiver domain RIMD111065_41460 PF03449 Transcription elongation factor, N-terminal RIMD111065_41460 PF01272 Transcription elongation factor, GreA/GreB, C-term RIMD111065_41470 PF00575 S1 RNA binding domain RIMD111065_41470 PF09371 Tex-like protein N-terminal domain RIMD111065_41470 PF17674 HHH domain RIMD111065_41470 PF16921 Tex protein YqgF-like domain RIMD111065_41510 PF00561 alpha/beta hydrolase fold RIMD111065_41520 PF00156 Phosphoribosyl transferase domain RIMD111065_41530 PF01106 NifU-like domain RIMD111065_41530 PF01521 Iron-sulphur cluster biosynthesis RIMD111065_41540 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus RIMD111065_41540 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus RIMD111065_41550 PF02556 Preprotein translocase subunit SecB RIMD111065_41560 PF00581 Rhodanese-like domain RIMD111065_41570 PF01676 Metalloenzyme superfamily RIMD111065_41570 PF06415 BPG-independent PGAM N-terminus (iPGM_N) RIMD111065_41590 PF01551 Peptidase family M23 RIMD111065_41610 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_41610 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_41620 PF01081 KDPG and KHG aldolase RIMD111065_41630 PF00920 Dehydratase family RIMD111065_41640 PF01202 Shikimate kinase RIMD111065_41650 PF02447 GntP family permease RIMD111065_41660 PF13091 PLD-like domain RIMD111065_41670 PF17191 RecG wedge domain RIMD111065_41670 PF00271 Helicase conserved C-terminal domain RIMD111065_41670 PF00270 DEAD/DEAH box helicase RIMD111065_41690 PF09500 Putative thioesterase (yiiD_Cterm) RIMD111065_41690 PF00583 Acetyltransferase (GNAT) family RIMD111065_41710 PF02580 D-Tyr-tRNA(Tyr) deacylase RIMD111065_41720 PF03631 Virulence factor BrkB RIMD111065_41730 PF00679 Elongation factor G C-terminus RIMD111065_41730 PF00009 Elongation factor Tu GTP binding domain RIMD111065_41730 PF03144 Elongation factor Tu domain 2 RIMD111065_41740 PF00120 Glutamine synthetase, catalytic domain RIMD111065_41740 PF03951 Glutamine synthetase, beta-Grasp domain RIMD111065_41770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_41770 PF00989 PAS fold RIMD111065_41770 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_41780 PF00158 Sigma-54 interaction domain RIMD111065_41780 PF02954 Bacterial regulatory protein, Fis family RIMD111065_41780 PF00072 Response regulator receiver domain RIMD111065_41790 PF00962 Adenosine/AMP deaminase RIMD111065_41800 PF06969 HemN C-terminal domain RIMD111065_41800 PF04055 Radical SAM superfamily RIMD111065_41810 PF10675 Protein of unknown function (DUF2489) RIMD111065_41820 PF04220 Der GTPase activator (YihI) RIMD111065_41830 PF00034 Cytochrome c RIMD111065_41840 PF01926 50S ribosome-binding GTPase RIMD111065_41850 PF07369 Protein of unknown function (DUF1488) RIMD111065_41860 PF08501 Shikimate dehydrogenase substrate binding domain RIMD111065_41860 PF01488 Shikimate / quinate 5-dehydrogenase RIMD111065_41860 PF18317 Shikimate 5'-dehydrogenase C-terminal domain RIMD111065_41870 PF01218 Coproporphyrinogen III oxidase RIMD111065_41880 PF01300 Telomere recombination RIMD111065_41890 PF00731 AIR carboxylase RIMD111065_41900 PF01396 Topoisomerase DNA binding C4 zinc finger RIMD111065_41910 PF04361 Protein of unknown function (DUF494) RIMD111065_41920 PF02481 DNA recombination-mediator protein A RIMD111065_41920 PF17782 DprA winged helix domain RIMD111065_41940 PF01327 Polypeptide deformylase RIMD111065_41950 PF00551 Formyl transferase RIMD111065_41950 PF02911 Formyl transferase, C-terminal domain RIMD111065_41960 PF01189 16S rRNA methyltransferase RsmB/F RIMD111065_41960 PF01029 NusB family RIMD111065_41970 PF02080 TrkA-C domain RIMD111065_41970 PF02254 TrkA-N domain RIMD111065_41980 PF02386 Cation transport protein RIMD111065_41990 PF02646 RmuC family RIMD111065_42020 PF02082 Transcriptional regulator RIMD111065_42030 PF00294 pfkB family carbohydrate kinase RIMD111065_42040 PF01262 Alanine dehydrogenase/PNT, C-terminal domain RIMD111065_42040 PF05222 Alanine dehydrogenase/PNT, N-terminal domain RIMD111065_42050 PF00117 Glutamine amidotransferase class-I RIMD111065_42050 PF00958 GMP synthase C terminal domain RIMD111065_42050 PF02540 NAD synthase RIMD111065_42060 PF00171 Aldehyde dehydrogenase family RIMD111065_42070 PF00202 Aminotransferase class-III RIMD111065_42080 PF07883 Cupin domain RIMD111065_42080 PF01381 Helix-turn-helix RIMD111065_42090 PF00171 Aldehyde dehydrogenase family RIMD111065_42110 PF00892 EamA-like transporter family RIMD111065_42120 PF12833 Helix-turn-helix domain RIMD111065_42130 PF01810 LysE type translocator RIMD111065_42140 PF00690 Cation transporter/ATPase, N-terminus RIMD111065_42140 PF00689 Cation transporting ATPase, C-terminus RIMD111065_42150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_42150 PF00672 HAMP domain RIMD111065_42150 PF12729 Four helix bundle sensory module for signal transduction RIMD111065_42160 PF04143 Sulphur transport RIMD111065_42170 PF01810 LysE type translocator RIMD111065_42190 PF06206 CpeT/CpcT family (DUF1001) RIMD111065_42250 PF14001 YdfZ protein RIMD111065_42300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_42300 PF03466 LysR substrate binding domain RIMD111065_42330 PF00580 UvrD/REP helicase N-terminal domain RIMD111065_42330 PF13361 UvrD-like helicase C-terminal domain RIMD111065_42340 PF02608 ABC transporter substrate-binding protein PnrA-like RIMD111065_42350 PF00005 ABC transporter RIMD111065_42360 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_42370 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_42380 PF03466 LysR substrate binding domain RIMD111065_42380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_42390 PF00107 Zinc-binding dehydrogenase RIMD111065_42390 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_42400 PF00756 Putative esterase RIMD111065_42420 PF12867 DinB superfamily RIMD111065_42420 PF03781 Sulfatase-modifying factor enzyme 1 RIMD111065_42430 PF13593 SBF-like CPA transporter family (DUF4137) RIMD111065_42440 PF13520 Amino acid permease RIMD111065_42450 PF01588 Putative tRNA binding domain RIMD111065_42460 PF13520 Amino acid permease RIMD111065_42470 PF04074 YhcH/YjgK/YiaL RIMD111065_42480 PF00703 Glycosyl hydrolases family 2 RIMD111065_42480 PF02929 Beta galactosidase small chain RIMD111065_42480 PF02836 Glycosyl hydrolases family 2, TIM barrel domain RIMD111065_42480 PF16353 Domain of unknown function(DUF4981) RIMD111065_42480 PF02837 Glycosyl hydrolases family 2, sugar binding domain RIMD111065_42490 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_42500 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_42510 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain RIMD111065_42510 PF01612 3'-5' exonuclease RIMD111065_42510 PF00476 DNA polymerase family A RIMD111065_42510 PF01367 5'-3' exonuclease, C-terminal SAM fold RIMD111065_42530 PF06005 Cell division protein ZapB RIMD111065_42550 PF06426 Serine acetyltransferase, N-terminal RIMD111065_42550 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_42560 PF01545 Cation efflux family RIMD111065_42560 PF16916 Dimerisation domain of Zinc Transporter RIMD111065_42570 PF00072 Response regulator receiver domain RIMD111065_42570 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_42580 PF00672 HAMP domain RIMD111065_42580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_42580 PF16527 Two-component sensor protein CpxA, periplasmic domain RIMD111065_42580 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_42590 PF00588 SpoU rRNA Methylase family RIMD111065_42600 PF01554 MatE RIMD111065_42610 PF02630 SCO1/SenC RIMD111065_42640 PF01726 LexA DNA binding domain RIMD111065_42640 PF00717 Peptidase S24-like RIMD111065_42650 PF01553 Acyltransferase RIMD111065_42660 PF01040 UbiA prenyltransferase family RIMD111065_42670 PF04345 Chorismate lyase RIMD111065_42680 PF03748 Flagellar basal body-associated protein FliL RIMD111065_42720 PF00107 Zinc-binding dehydrogenase RIMD111065_42720 PF08240 Alcohol dehydrogenase GroES-like domain RIMD111065_42730 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family RIMD111065_42730 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_42740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 RIMD111065_42760 PF03611 PTS system sugar-specific permease component RIMD111065_42770 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) RIMD111065_42780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_42790 PF00535 Glycosyl transferase family 2 RIMD111065_42800 PF01075 Glycosyltransferase family 9 (heptosyltransferase) RIMD111065_42810 PF01467 Cytidylyltransferase-like RIMD111065_42820 PF04393 Protein of unknown function (DUF535) RIMD111065_42830 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain RIMD111065_42830 PF06827 Zinc finger found in FPG and IleRS RIMD111065_42830 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain RIMD111065_42850 PF00471 Ribosomal protein L33 RIMD111065_42860 PF00830 Ribosomal L28 family RIMD111065_42870 PF04002 RadC-like JAB domain RIMD111065_42880 PF04127 DNA / pantothenate metabolism flavoprotein RIMD111065_42880 PF02441 Flavoprotein RIMD111065_42890 PF00692 dUTPase RIMD111065_42900 PF00440 Bacterial regulatory proteins, tetR family RIMD111065_42910 PF00924 Mechanosensitive ion channel RIMD111065_42910 PF05552 Conserved TM helix RIMD111065_42930 PF00342 Phosphoglucose isomerase RIMD111065_42940 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain RIMD111065_42940 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain RIMD111065_42950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family RIMD111065_42950 PF03466 LysR substrate binding domain RIMD111065_42980 PF00583 Acetyltransferase (GNAT) family RIMD111065_42980 PF13380 CoA binding domain RIMD111065_42980 PF13607 Succinyl-CoA ligase like flavodoxin domain RIMD111065_42990 PF12724 Flavodoxin domain RIMD111065_43000 PF02386 Cation transport protein RIMD111065_43010 PF09186 Domain of unknown function (DUF1949) RIMD111065_43010 PF01205 Uncharacterized protein family UPF0029 RIMD111065_43020 PF00557 Metallopeptidase family M24 RIMD111065_43030 PF00501 AMP-binding enzyme RIMD111065_43030 PF13193 AMP-binding enzyme C-terminal domain RIMD111065_43040 PF00378 Enoyl-CoA hydratase/isomerase RIMD111065_43040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain RIMD111065_43040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain RIMD111065_43050 PF00108 Thiolase, N-terminal domain RIMD111065_43050 PF02803 Thiolase, C-terminal domain RIMD111065_43060 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_43060 PF00072 Response regulator receiver domain RIMD111065_43070 PF00672 HAMP domain RIMD111065_43070 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_43070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_43080 PF01547 Bacterial extracellular solute-binding protein RIMD111065_43100 PF01206 Sulfurtransferase TusA RIMD111065_43110 PF01042 Endoribonuclease L-PSP RIMD111065_43120 PF13488 Glycine zipper RIMD111065_43120 PF00691 OmpA family RIMD111065_43130 PF02743 Cache domain RIMD111065_43130 PF00672 HAMP domain RIMD111065_43130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain RIMD111065_43140 PF03352 Methyladenine glycosylase RIMD111065_43150 PF02091 Glycyl-tRNA synthetase alpha subunit RIMD111065_43160 PF05746 DALR anticodon binding domain RIMD111065_43160 PF02092 Glycyl-tRNA synthetase beta subunit RIMD111065_43190 PF01202 Shikimate kinase RIMD111065_43230 PF03222 Tryptophan/tyrosine permease family RIMD111065_43240 PF12801 4Fe-4S binding domain RIMD111065_43260 PF18113 Rubredoxin binding C-terminal domain RIMD111065_43260 PF07992 Pyridine nucleotide-disulphide oxidoreductase RIMD111065_43270 PF00258 Flavodoxin RIMD111065_43270 PF00753 Metallo-beta-lactamase superfamily RIMD111065_43270 PF00301 Rubredoxin RIMD111065_43280 PF01590 GAF domain RIMD111065_43280 PF00158 Sigma-54 interaction domain RIMD111065_43290 PF07702 UTRA domain RIMD111065_43290 PF00392 Bacterial regulatory proteins, gntR family RIMD111065_43300 PF02378 Phosphotransferase system, EIIC RIMD111065_43300 PF00367 phosphotransferase system, EIIB RIMD111065_43310 PF02056 Family 4 glycosyl hydrolase RIMD111065_43310 PF11975 Family 4 glycosyl hydrolase C-terminal domain RIMD111065_43320 PF00356 Bacterial regulatory proteins, lacI family RIMD111065_43330 PF13458 Periplasmic binding protein RIMD111065_43340 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_43350 PF11862 Domain of unknown function (DUF3382) RIMD111065_43350 PF02653 Branched-chain amino acid transport system / permease component RIMD111065_43360 PF00005 ABC transporter RIMD111065_43360 PF12399 Branched-chain amino acid ATP-binding cassette transporter RIMD111065_43370 PF00005 ABC transporter RIMD111065_43400 PF00581 Rhodanese-like domain RIMD111065_43410 PF01694 Rhomboid family RIMD111065_43410 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease RIMD111065_43420 PF12262 Bacterial virulence factor lipase N-terminal RIMD111065_43430 PF04380 Membrane fusogenic activity RIMD111065_43440 PF00175 Oxidoreductase NAD-binding domain RIMD111065_43450 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase RIMD111065_43470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_43470 PF07498 Rho termination factor, N-terminal domain RIMD111065_43470 PF07497 Rho termination factor, RNA-binding domain RIMD111065_43480 PF00085 Thioredoxin RIMD111065_43490 PF00271 Helicase conserved C-terminal domain RIMD111065_43490 PF00270 DEAD/DEAH box helicase RIMD111065_43500 PF02541 Ppx/GppA phosphatase family RIMD111065_43530 PF04445 Putative SAM-dependent methyltransferase RIMD111065_43540 PF03707 Bacterial signalling protein N terminal repeat RIMD111065_43540 PF00990 Diguanylate cyclase, GGDEF domain RIMD111065_43540 PF00563 EAL domain RIMD111065_43550 PF01432 Peptidase family M3 RIMD111065_43560 PF00490 Delta-aminolevulinic acid dehydratase RIMD111065_43570 PF01026 TatD related DNase RIMD111065_43580 PF00902 Sec-independent protein translocase protein (TatC) RIMD111065_43590 PF02416 mttA/Hcf106 family RIMD111065_43600 PF02416 mttA/Hcf106 family RIMD111065_43610 PF03109 ABC1 family RIMD111065_43620 PF02036 SCP-2 sterol transfer family RIMD111065_43630 PF01209 ubiE/COQ5 methyltransferase family RIMD111065_43640 PF02537 CrcB-like protein, Camphor Resistance (CrcB) RIMD111065_43650 PF07969 Amidohydrolase family RIMD111065_43680 PF03544 Gram-negative bacterial TonB protein C-terminal RIMD111065_43690 PF02472 Biopolymer transport protein ExbD/TolR RIMD111065_43700 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_43710 PF01618 MotA/TolQ/ExbB proton channel family RIMD111065_43730 PF03472 Autoinducer binding domain RIMD111065_43730 PF00196 Bacterial regulatory proteins, luxR family RIMD111065_43740 PF01380 SIS domain RIMD111065_43750 PF00455 DeoR C terminal sensor domain RIMD111065_43750 PF08220 DeoR-like helix-turn-helix domain RIMD111065_43760 PF00486 Transcriptional regulatory protein, C terminal RIMD111065_43760 PF00072 Response regulator receiver domain RIMD111065_43770 PF00512 His Kinase A (phospho-acceptor) domain RIMD111065_43770 PF00672 HAMP domain RIMD111065_43770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase RIMD111065_43780 PF00905 Penicillin binding protein transpeptidase domain RIMD111065_43790 PF06123 Inner membrane protein CreD RIMD111065_43800 PF14602 Hexapeptide repeat of succinyl-transferase RIMD111065_43800 PF00132 Bacterial transferase hexapeptide (six repeats) RIMD111065_43800 PF12804 MobA-like NTP transferase domain RIMD111065_43810 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain RIMD111065_43810 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain RIMD111065_43820 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_43820 PF02874 ATP synthase alpha/beta family, beta-barrel domain RIMD111065_43830 PF00231 ATP synthase RIMD111065_43840 PF00306 ATP synthase alpha/beta chain, C terminal domain RIMD111065_43840 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain RIMD111065_43840 PF02874 ATP synthase alpha/beta family, beta-barrel domain RIMD111065_43850 PF00213 ATP synthase delta (OSCP) subunit RIMD111065_43860 PF00430 ATP synthase B/B' CF(0) RIMD111065_43870 PF00137 ATP synthase subunit C RIMD111065_43880 PF00119 ATP synthase A chain RIMD111065_43900 PF17762 HTH domain found in ParB protein RIMD111065_43900 PF02195 ParB-like nuclease domain RIMD111065_43910 PF13614 AAA domain RIMD111065_43920 PF02527 rRNA small subunit methyltransferase G RIMD111065_43930 PF13932 GidA associated domain RIMD111065_43930 PF01134 Glucose inhibited division protein A RIMD111065_43940 PF00258 Flavodoxin RIMD111065_43950 PF00593 TonB dependent receptor RIMD111065_43950 PF07715 TonB-dependent Receptor Plug Domain RIMD111065_43960 PF00005 ABC transporter RIMD111065_43970 PF00005 ABC transporter RIMD111065_43990 PF01032 FecCD transport family RIMD111065_44000 PF12631 MnmE helical domain RIMD111065_44000 PF10396 GTP-binding protein TrmE N-terminus RIMD111065_44000 PF01926 50S ribosome-binding GTPase RIMD111065_44010 PF02096 60Kd inner membrane protein RIMD111065_44010 PF14849 YidC periplasmic domain RIMD111065_44020 PF00825 Ribonuclease P RIMD111065_44030 PF00468 Ribosomal protein L34 RIMD111065_44040 PF00005 ABC transporter RIMD111065_44050 PF00528 Binding-protein-dependent transport system inner membrane component RIMD111065_44060 PF00497 Bacterial extracellular solute-binding proteins, family 3