locus-tag	class	description
RIMD111065_00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
RIMD111065_00020	COG0592	DNA-directed DNA polymerase activity
RIMD111065_00030	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
RIMD111065_00050	COG1196	nuclear chromosome segregation
RIMD111065_00130	COG2378	regulation of single-species biofilm formation
RIMD111065_00140	COG0071	Belongs to the small heat shock protein (HSP20) family
RIMD111065_00150	COG0071	Belongs to the small heat shock protein (HSP20) family
RIMD111065_00160	COG3977	Valine--pyruvate aminotransferase
RIMD111065_00190	COG2814	Major facilitator Superfamily
RIMD111065_00200	COG0745	RESPONSE REGULATOR receiver
RIMD111065_00210	COG2205	protein histidine kinase activity
RIMD111065_00250	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RIMD111065_00260	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_00260	COG4191	Histidine kinase
RIMD111065_00270	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
RIMD111065_00280	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_00290	COG1309	transcriptional regulator
RIMD111065_00310	COG0469	pyruvate kinase activity
RIMD111065_00320	COG2271	Major facilitator Superfamily
RIMD111065_00380	COG0561	phosphatase activity
RIMD111065_00390	COG2267	carboxylic ester hydrolase activity
RIMD111065_00400	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
RIMD111065_00410	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
RIMD111065_00420	COG1758	RNA polymerase activity
RIMD111065_00440	COG0859	PFAM glycosyl transferase family 9
RIMD111065_00450	COG3642	lipopolysaccharide core region biosynthetic process
RIMD111065_00530	COG0589	response to stress
RIMD111065_00540	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
RIMD111065_00560	COG1528	Iron-storage protein
RIMD111065_00570	COG2081	HI0933 family
RIMD111065_00580	COG2223	nitrite transmembrane transporter activity
RIMD111065_00620	COG3188	usher protein
RIMD111065_00660	COG2205	protein histidine kinase activity
RIMD111065_00660	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_00680	COG3275	phosphorelay sensor kinase activity
RIMD111065_00690	COG3279	Response regulator of the LytR AlgR family
RIMD111065_00700	COG2223	nitrite transmembrane transporter activity
RIMD111065_00710	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
RIMD111065_00720	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
RIMD111065_00760	COG0583	DNA-binding transcription factor activity
RIMD111065_00780	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
RIMD111065_00800	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
RIMD111065_00810	COG2166	iron-sulfur cluster assembly
RIMD111065_00820	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
RIMD111065_00830	COG0210	DNA helicase
RIMD111065_00850	COG3245	cytochrome
RIMD111065_00860	COG1063	alcohol dehydrogenase
RIMD111065_00870	COG0156	8-amino-7-oxononanoate synthase activity
RIMD111065_00890	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
RIMD111065_00920	COG3306	glycosyltransferase involved in LPS biosynthesis
RIMD111065_00960	COG1561	YicC-like family, N-terminal region
RIMD111065_00970	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
RIMD111065_00980	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
RIMD111065_01000	COG0789	Transcriptional regulator
RIMD111065_01010	COG5001	Diguanylate cyclase
RIMD111065_01010	COG4251	negative regulation of phosphorylation
RIMD111065_01010	COG2203	Gaf domain
RIMD111065_01010	COG3706	GGDEF domain
RIMD111065_01020	COG3084	Protein conserved in bacteria
RIMD111065_01040	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
RIMD111065_01050	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
RIMD111065_01060	COG3639	organic phosphonate transmembrane transporter activity
RIMD111065_01070	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
RIMD111065_01080	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
RIMD111065_01100	COG1335	isochorismatase
RIMD111065_01120	COG1683	Conserved Protein
RIMD111065_01130	COG0204	Acyl-transferase
RIMD111065_01140	COG0204	Acyl-transferase
RIMD111065_01150	COG0606	chelatase, subunit chli
RIMD111065_01170	COG3978	acetolactate synthase activity
RIMD111065_01190	COG0129	dihydroxy-acid dehydratase activity
RIMD111065_01230	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
RIMD111065_01240	COG0254	rRNA binding
RIMD111065_01250	COG0702	epimerase
RIMD111065_01260	COG0281	malic enzyme
RIMD111065_01280	COG2205	protein histidine kinase activity
RIMD111065_01290	COG0745	RESPONSE REGULATOR receiver
RIMD111065_01300	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
RIMD111065_01330	COG0366	Alpha amylase catalytic
RIMD111065_01360	COG0443	Heat shock 70 kDa protein
RIMD111065_01370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
RIMD111065_01380	COG3045	CreA protein
RIMD111065_01420	COG0174	glutamine synthetase
RIMD111065_01460	COG3842	ATPase activity
RIMD111065_01470	COG1176	ABC-type spermidine putrescine transport system, permease component I
RIMD111065_01480	COG1177	transmembrane transport
RIMD111065_01490	COG2258	MOSC domain
RIMD111065_01510	COG2050	protein possibly involved in aromatic compounds catabolism
RIMD111065_01520	COG0514	ATP-dependent DNA helicase (RecQ)
RIMD111065_01540	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
RIMD111065_01560	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
RIMD111065_01570	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
RIMD111065_01590	COG2239	Acts as a magnesium transporter
RIMD111065_01600	COG1648	precorrin-2 dehydrogenase activity
RIMD111065_01600	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
RIMD111065_01610	COG2116	formate transmembrane transporter activity
RIMD111065_01630	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
RIMD111065_01660	COG0477	Major facilitator Superfamily
RIMD111065_01670	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
RIMD111065_01680	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
RIMD111065_01720	COG1595	DNA-templated transcription, initiation
RIMD111065_01730	COG3806	Anti-sigma factor
RIMD111065_01740	COG1968	undecaprenyl-diphosphatase activity
RIMD111065_01750	COG0667	Aldo Keto reductase
RIMD111065_01760	COG2017	converts alpha-aldose to the beta-anomer
RIMD111065_01770	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
RIMD111065_01790	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
RIMD111065_01800	COG1609	Transcriptional regulator
RIMD111065_01810	COG3250	beta-galactosidase activity
RIMD111065_01910	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
RIMD111065_01920	COG1288	antiporter activity
RIMD111065_01930	COG1438	arginine binding
RIMD111065_01940	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
RIMD111065_01950	COG0540	Belongs to the ATCase OTCase family
RIMD111065_01970	COG0688	phosphatidylethanolamine metabolic process
RIMD111065_01990	COG3040	lipid binding
RIMD111065_02000	COG2207	Transcriptional regulator
RIMD111065_02010	COG1979	alcohol dehydrogenase
RIMD111065_02020	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
RIMD111065_02030	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
RIMD111065_02050	COG3681	Belongs to the UPF0597 family
RIMD111065_02070	COG0446	pyridine nucleotide-disulphide oxidoreductase
RIMD111065_02080	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
RIMD111065_02090	COG0564	pseudouridine synthase activity
RIMD111065_02110	COG0542	response to heat
RIMD111065_02120	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
RIMD111065_02130	COG2502	aspartate--ammonia ligase
RIMD111065_02140	COG1522	sequence-specific DNA binding
RIMD111065_02160	COG5413	integral membrane protein
RIMD111065_02180	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_02200	COG2205	protein histidine kinase activity
RIMD111065_02220	COG2204	response regulator
RIMD111065_02250	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
RIMD111065_02310	COG0243	molybdopterin cofactor binding
RIMD111065_02320	COG3005	denitrification pathway
RIMD111065_02330	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
RIMD111065_02380	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RIMD111065_02390	COG0569	domain protein
RIMD111065_02400	COG0812	UDP-N-acetylmuramate dehydrogenase activity
RIMD111065_02430	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
RIMD111065_02450	COG0250	Participates in transcription elongation, termination and antitermination
RIMD111065_02460	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
RIMD111065_02470	COG0081	regulation of translation
RIMD111065_02480	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
RIMD111065_02490	COG0222	ribosome binding
RIMD111065_02500	COG0085	RNA polymerase activity
RIMD111065_02510	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
RIMD111065_02520	COG2964	Protein conserved in bacteria
RIMD111065_02530	COG0251	oxidation-reduction process
RIMD111065_02550	COG2923	Belongs to the DsrF TusC family
RIMD111065_02560	COG2168	tRNA wobble position uridine thiolation
RIMD111065_02570	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
RIMD111065_02580	COG0049	tRNA binding
RIMD111065_02590	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
RIMD111065_02600	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
RIMD111065_02610	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
RIMD111065_02630	COG2252	PERMEase
RIMD111065_02640	COG2376	Dihydroxyacetone kinase
RIMD111065_02650	COG1461	Dihydroxyacetone kinase
RIMD111065_02680	COG3284	Transcriptional regulator
RIMD111065_02700	COG2957	Belongs to the agmatine deiminase family
RIMD111065_02720	COG0628	permease
RIMD111065_02730	COG0494	nUDIX hydrolase
RIMD111065_02790	COG0753	catalase activity
RIMD111065_02800	COG1247	-acetyltransferase
RIMD111065_02840	COG2199	diguanylate cyclase activity
RIMD111065_02840	COG2203	Gaf domain
RIMD111065_02860	COG3842	ATPase activity
RIMD111065_02880	COG1175	transmembrane transport
RIMD111065_02930	COG0583	DNA-binding transcription factor activity
RIMD111065_02950	COG1741	Belongs to the pirin family
RIMD111065_02960	COG2259	Doxx family
RIMD111065_02970	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
RIMD111065_02980	COG1074	ATP-dependent DNA helicase activity
RIMD111065_02990	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
RIMD111065_03010	COG0346	lactoylglutathione lyase activity
RIMD111065_03120	COG3706	GGDEF domain
RIMD111065_03130	COG4771	TonB-dependent receptor
RIMD111065_03140	COG1278	Cold shock
RIMD111065_03190	COG0629	single-stranded DNA binding
RIMD111065_03200	COG2197	response regulator
RIMD111065_03210	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
RIMD111065_03230	COG3047	cAMP biosynthetic process
RIMD111065_03240	COG0840	transmembrane signaling receptor activity
RIMD111065_03290	COG3135	benzoate transporter
RIMD111065_03300	COG1396	sequence-specific DNA binding
RIMD111065_03320	COG2926	Belongs to the UPF0265 family
RIMD111065_03340	COG3028	Belongs to the UPF0307 family
RIMD111065_03350	COG0312	modulator of DNA gyrase
RIMD111065_03360	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
RIMD111065_03370	COG5007	Belongs to the BolA IbaG family
RIMD111065_03390	COG2854	intermembrane phospholipid transfer
RIMD111065_03400	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
RIMD111065_03410	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
RIMD111065_03420	COG1127	ABC transporter
RIMD111065_03430	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
RIMD111065_03430	COG0517	IMP dehydrogenase activity
RIMD111065_03440	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
RIMD111065_03450	COG3117	lipopolysaccharide transmembrane transporter activity
RIMD111065_03460	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
RIMD111065_03470	COG1137	ATPase activity
RIMD111065_03480	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
RIMD111065_03500	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_03510	COG1660	Displays ATPase and GTPase activities
RIMD111065_03520	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_03530	COG3711	transcriptional antiterminator
RIMD111065_03530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_03560	COG3964	amidohydrolase
RIMD111065_03620	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
RIMD111065_03630	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
RIMD111065_03650	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
RIMD111065_03660	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
RIMD111065_03670	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
RIMD111065_03680	COG0723	plastoquinol--plastocyanin reductase activity
RIMD111065_03690	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
RIMD111065_03700	COG2857	Cytochrome c1
RIMD111065_03710	COG0625	glutathione transferase activity
RIMD111065_03720	COG2969	positive regulation of protein catabolic process
RIMD111065_03730	COG2823	Periplasmic or secreted lipoprotein
RIMD111065_03740	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
RIMD111065_03750	COG0792	nuclease activity
RIMD111065_03760	COG3107	peptidoglycan biosynthetic process
RIMD111065_03770	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
RIMD111065_03780	COG2001	Belongs to the MraZ family
RIMD111065_03790	COG0275	rRNA processing
RIMD111065_03800	COG3116	cell division
RIMD111065_03810	COG0768	penicillin binding
RIMD111065_03830	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
RIMD111065_03840	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
RIMD111065_03850	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
RIMD111065_03860	COG0772	Belongs to the SEDS family
RIMD111065_03870	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
RIMD111065_03880	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
RIMD111065_03890	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
RIMD111065_03900	COG0849	cell division
RIMD111065_03910	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
RIMD111065_03920	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
RIMD111065_03940	COG0653	protein targeting
RIMD111065_03960	COG0494	nUDIX hydrolase
RIMD111065_03970	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
RIMD111065_03980	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
RIMD111065_04010	COG1459	type II secretion system
RIMD111065_04020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
RIMD111065_04070	COG2186	Transcriptional regulator
RIMD111065_04080	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
RIMD111065_04090	COG0508	dehydrogenase complex catalyzes the overall conversion of
RIMD111065_04100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
RIMD111065_04120	COG0840	transmembrane signaling receptor activity
RIMD111065_04130	COG0840	transmembrane signaling receptor activity
RIMD111065_04140	COG1752	Esterase of the alpha-beta hydrolase superfamily
RIMD111065_04150	COG1049	propionate catabolic process, 2-methylcitrate cycle
RIMD111065_04160	COG2200	EAL domain
RIMD111065_04180	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_04200	COG0523	cobalamin synthesis protein
RIMD111065_04210	COG0477	Major facilitator Superfamily
RIMD111065_04240	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
RIMD111065_04250	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
RIMD111065_04290	COG3314	Sporulation integral membrane protein YlbJ
RIMD111065_04300	COG0784	Response regulator, receiver
RIMD111065_04300	COG0835	chemotaxis
RIMD111065_04310	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_04320	COG1444	tRNA N-acetyltransferase activity
RIMD111065_04370	COG1803	Methylglyoxal synthase
RIMD111065_04400	COG0252	asparaginase activity
RIMD111065_04440	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_04440	COG1263	PTS System
RIMD111065_04450	COG0366	Alpha amylase catalytic
RIMD111065_04460	COG0110	maltose O-acetyltransferase activity
RIMD111065_04470	COG1522	sequence-specific DNA binding
RIMD111065_04480	COG5006	permease, DMT superfamily
RIMD111065_04500	COG1012	belongs to the aldehyde dehydrogenase family
RIMD111065_04510	COG1177	transmembrane transport
RIMD111065_04520	COG1176	ABC-type spermidine putrescine transport system, permease component I
RIMD111065_04530	COG3842	ATPase activity
RIMD111065_04540	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
RIMD111065_04550	COG0583	DNA-binding transcription factor activity
RIMD111065_04560	COG1757	Na H antiporter
RIMD111065_04590	COG0297	glycogen (starch) synthase activity
RIMD111065_04600	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
RIMD111065_04610	COG2813	Specifically methylates the guanine in position
RIMD111065_04620	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
RIMD111065_04630	COG2203	Gaf domain
RIMD111065_04630	COG4251	negative regulation of phosphorylation
RIMD111065_04630	COG5001	Diguanylate cyclase
RIMD111065_04630	COG3706	GGDEF domain
RIMD111065_04650	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RIMD111065_04670	COG2995	paraquat-inducible protein a
RIMD111065_04680	COG3008	intermembrane lipid transfer
RIMD111065_04680	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
RIMD111065_04690	COG3009	Protein conserved in bacteria
RIMD111065_04700	COG2885	chlorophyll binding
RIMD111065_04700	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
RIMD111065_04720	COG3240	lipase activity
RIMD111065_04730	COG3111	PFAM Bacterial OB fold (BOF) protein
RIMD111065_04750	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
RIMD111065_04760	COG1194	a g-specific adenine glycosylase
RIMD111065_04780	COG3267	Type II secretory pathway component ExeA
RIMD111065_04780	COG3409	Peptidoglycan-binding domain 1 protein
RIMD111065_04790	COG0617	tRNA 3'-terminal CCA addition
RIMD111065_04820	COG1346	cytolysis
RIMD111065_04830	COG1380	Effector of murein hydrolase LrgA
RIMD111065_04840	COG0583	DNA-binding transcription factor activity
RIMD111065_04900	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
RIMD111065_04910	COG0306	phosphate transporter
RIMD111065_04920	COG1392	Phosphate transport regulator
RIMD111065_04940	COG3025	triphosphatase activity
RIMD111065_04960	COG1560	Kdo2-lipid A biosynthetic process
RIMD111065_04970	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
RIMD111065_04970	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
RIMD111065_04980	COG1538	Outer membrane efflux protein
RIMD111065_04990	COG0494	nUDIX hydrolase
RIMD111065_05000	COG3151	Protein conserved in bacteria
RIMD111065_05020	COG3150	esterase
RIMD111065_05030	COG1051	belongs to the nudix hydrolase family
RIMD111065_05060	COG1566	PFAM secretion protein HlyD family protein
RIMD111065_05070	COG1289	transmembrane transporter activity
RIMD111065_05110	COG0583	DNA-binding transcription factor activity
RIMD111065_05200	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
RIMD111065_05240	COG0204	Acyl-transferase
RIMD111065_05250	COG1842	Phage shock protein A
RIMD111065_05280	COG2827	Endonuclease containing a URI domain
RIMD111065_05300	COG2962	Rard protein
RIMD111065_05310	COG1573	uracil-dna glycosylase
RIMD111065_05320	COG0697	spore germination
RIMD111065_05330	COG0583	DNA-binding transcription factor activity
RIMD111065_05340	COG1108	ABC-type Mn2 Zn2 transport systems permease components
RIMD111065_05350	COG1121	(ABC) transporter
RIMD111065_05360	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
RIMD111065_05400	COG0739	heme binding
RIMD111065_05420	COG3068	Protein conserved in bacteria
RIMD111065_05460	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
RIMD111065_05470	COG1546	Belongs to the CinA family
RIMD111065_05480	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
RIMD111065_05500	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
RIMD111065_05510	COG0527	aspartate kinase activity
RIMD111065_05520	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
RIMD111065_05530	COG1686	Belongs to the peptidase S11 family
RIMD111065_05540	COG0586	Pfam SNARE associated Golgi protein
RIMD111065_05550	COG1253	flavin adenine dinucleotide binding
RIMD111065_05560	COG0525	valine-tRNA ligase activity
RIMD111065_05570	COG2927	DNA polymerase III (CHI subunit)
RIMD111065_05580	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
RIMD111065_05590	COG0795	lipopolysaccharide-transporting ATPase activity
RIMD111065_05600	COG0795	lipopolysaccharide-transporting ATPase activity
RIMD111065_05620	COG0004	ammonium transporteR
RIMD111065_05630	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
RIMD111065_05650	COG2165	general secretion pathway protein
RIMD111065_05660	COG0084	hydrolase, TatD family'
RIMD111065_05670	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RIMD111065_05690	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
RIMD111065_05700	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
RIMD111065_05710	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
RIMD111065_05720	COG0813	purine-nucleoside phosphorylase activity
RIMD111065_05730	COG3447	MASE1 domain protein
RIMD111065_05730	COG5002	protein histidine kinase activity
RIMD111065_05730	COG5001	Diguanylate cyclase
RIMD111065_05750	COG0560	Phosphoserine phosphatase
RIMD111065_05800	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
RIMD111065_05810	COG0776	regulation of translation
RIMD111065_05840	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
RIMD111065_05850	COG0735	belongs to the Fur family
RIMD111065_05900	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
RIMD111065_05910	COG0513	Belongs to the DEAD box helicase family
RIMD111065_05920	COG3022	response to hydroperoxide
RIMD111065_05950	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
RIMD111065_05960	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
RIMD111065_05970	COG0762	integral membrane protein
RIMD111065_05980	COG1872	DUF167
RIMD111065_06010	COG4166	transmembrane transport
RIMD111065_06050	COG1024	Enoyl-CoA hydratase
RIMD111065_06080	COG4221	oxidoreductase activity
RIMD111065_06090	COG0442	prolyl-tRNA aminoacylation
RIMD111065_06100	COG0840	transmembrane signaling receptor activity
RIMD111065_06110	COG0632	four-way junction helicase activity
RIMD111065_06120	COG2255	four-way junction helicase activity
RIMD111065_06130	COG1271	oxidase subunit
RIMD111065_06140	COG1294	oxidase, subunit
RIMD111065_06150	COG3790	cyd operon protein YbgE
RIMD111065_06160	COG0824	Thioesterase
RIMD111065_06170	COG0811	peptide transport
RIMD111065_06200	COG0823	Involved in the tonB-independent uptake of proteins
RIMD111065_06210	COG2885	chlorophyll binding
RIMD111065_06220	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
RIMD111065_06230	COG0840	transmembrane signaling receptor activity
RIMD111065_06240	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
RIMD111065_06250	COG0676	glucose-6-phosphate 1-epimerase activity
RIMD111065_06260	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
RIMD111065_06270	COG1640	4-alpha-glucanotransferase
RIMD111065_06280	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
RIMD111065_06320	COG1051	belongs to the nudix hydrolase family
RIMD111065_06330	COG2130	NADP-dependent
RIMD111065_06340	COG1764	response to oxidative stress
RIMD111065_06350	COG1846	Transcriptional regulator
RIMD111065_06420	COG0561	phosphatase activity
RIMD111065_06450	COG0733	neurotransmitter:sodium symporter activity
RIMD111065_06470	COG0733	neurotransmitter:sodium symporter activity
RIMD111065_06520	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RIMD111065_06550	COG1794	racemase activity, acting on amino acids and derivatives
RIMD111065_06580	COG2731	YhcH YjgK YiaL family protein
RIMD111065_06600	COG0668	transmembrane transport
RIMD111065_06610	COG1376	ErfK ybiS ycfS ynhG family protein
RIMD111065_06620	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
RIMD111065_06720	COG0583	DNA-binding transcription factor activity
RIMD111065_06730	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
RIMD111065_06750	COG0488	(ABC) transporter
RIMD111065_06760	COG0517	IMP dehydrogenase activity
RIMD111065_06760	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
RIMD111065_06770	COG1585	Membrane protein implicated in regulation of membrane protease activity
RIMD111065_06780	COG0330	HflC and HflK could
RIMD111065_06790	COG1648	precorrin-2 dehydrogenase activity
RIMD111065_06790	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
RIMD111065_06800	COG0175	sulfate reduction
RIMD111065_06810	COG2895	sulfate adenylyltransferase (ATP) activity
RIMD111065_06820	COG0471	metal ion transport
RIMD111065_06820	COG3273	potassium ion transport
RIMD111065_06830	COG0529	Catalyzes the synthesis of activated sulfate
RIMD111065_06910	COG1136	(ABC) transporter
RIMD111065_06940	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
RIMD111065_06970	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
RIMD111065_06980	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
RIMD111065_06990	COG0163	prenyltransferase activity
RIMD111065_07020	COG1131	(ABC) transporter
RIMD111065_07030	COG0842	Transport permease protein
RIMD111065_07040	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
RIMD111065_07050	COG1924	4 iron, 4 sulfur cluster binding
RIMD111065_07090	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
RIMD111065_07100	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
RIMD111065_07130	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
RIMD111065_07140	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
RIMD111065_07150	COG1489	DNA binding
RIMD111065_07170	COG1643	Atp-dependent helicase
RIMD111065_07180	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RIMD111065_07190	COG0346	lactoylglutathione lyase activity
RIMD111065_07210	COG2076	Multidrug Resistance protein
RIMD111065_07230	COG3437	response regulator, receiver
RIMD111065_07230	COG0784	Response regulator, receiver
RIMD111065_07250	COG0671	phosphoesterase, PA-phosphatase related
RIMD111065_07280	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
RIMD111065_07290	COG0038	chloride channel
RIMD111065_07310	COG0316	Belongs to the HesB IscA family
RIMD111065_07320	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_07350	COG3311	Transcriptional regulator
RIMD111065_07440	COG2003	Belongs to the UPF0758 family
RIMD111065_07540	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
RIMD111065_07550	COG0732	type I restriction modification DNA specificity domain
RIMD111065_07560	COG1401	restriction endodeoxyribonuclease activity
RIMD111065_07560	COG1401	restriction endodeoxyribonuclease activity
RIMD111065_07580	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
RIMD111065_07600	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
RIMD111065_07630	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_07690	COG0745	RESPONSE REGULATOR receiver
RIMD111065_07700	COG3104	oligopeptide transport
RIMD111065_07710	COG1210	Utp--glucose-1-phosphate uridylyltransferase
RIMD111065_07720	COG1555	photosystem II stabilization
RIMD111065_07740	COG2350	Protein conserved in bacteria
RIMD111065_07750	COG2917	probably involved in intracellular septation
RIMD111065_07760	COG0076	glutamate decarboxylase activity
RIMD111065_07770	COG1272	protein, Hemolysin III
RIMD111065_07780	COG0569	domain protein
RIMD111065_07780	COG2985	domain, Protein
RIMD111065_07800	COG0835	chemotaxis
RIMD111065_07800	COG0784	Response regulator, receiver
RIMD111065_07810	COG2755	lipolytic protein G-D-S-L family
RIMD111065_07820	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
RIMD111065_07830	COG1090	epimerase
RIMD111065_07850	COG2200	EAL domain
RIMD111065_07860	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RIMD111065_07870	COG2234	aminopeptidase activity
RIMD111065_07870	COG4935	Belongs to the peptidase S8 family
RIMD111065_07880	COG0220	tRNA (guanine-N7-)-methyltransferase activity
RIMD111065_07890	COG3171	Protein conserved in bacteria
RIMD111065_07900	COG2066	Belongs to the glutaminase family
RIMD111065_07910	COG2897	thiosulfate sulfurtransferase activity
RIMD111065_07920	COG1404	Belongs to the peptidase S8 family
RIMD111065_07940	COG1132	(ABC) transporter
RIMD111065_07980	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
RIMD111065_07990	COG5001	Diguanylate cyclase
RIMD111065_07990	COG3300	MHYT domain
RIMD111065_08010	COG2207	Transcriptional regulator
RIMD111065_08020	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
RIMD111065_08030	COG3059	membrane
RIMD111065_08060	COG4628	conserved protein (DUF2132)
RIMD111065_08070	COG0688	phosphatidylethanolamine metabolic process
RIMD111065_08080	COG1162	GTPase activity
RIMD111065_08090	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
RIMD111065_08100	COG1278	Cold shock
RIMD111065_08120	COG0840	transmembrane signaling receptor activity
RIMD111065_08130	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
RIMD111065_08140	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
RIMD111065_08200	COG0848	biopolymer transport protein
RIMD111065_08210	COG0811	peptide transport
RIMD111065_08220	COG0811	peptide transport
RIMD111065_08250	COG4174	ABC transporter (Permease)
RIMD111065_08260	COG4239	(ABC) transporter, permease
RIMD111065_08280	COG0444	Belongs to the ABC transporter superfamily
RIMD111065_08290	COG4608	Belongs to the ABC transporter superfamily
RIMD111065_08310	COG2195	Cleaves the N-terminal amino acid of tripeptides
RIMD111065_08320	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
RIMD111065_08330	COG1073	alpha beta
RIMD111065_08360	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
RIMD111065_08410	COG0243	molybdopterin cofactor binding
RIMD111065_08440	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
RIMD111065_08440	COG1116	anion transmembrane transporter activity
RIMD111065_08450	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
RIMD111065_08460	COG1116	anion transmembrane transporter activity
RIMD111065_08470	COG2146	nitrite reductase [NAD(P)H] activity
RIMD111065_08470	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
RIMD111065_08480	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
RIMD111065_08480	COG2146	nitrite reductase [NAD(P)H] activity
RIMD111065_08490	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RIMD111065_08500	COG2313	pseudouridylate synthase activity
RIMD111065_08520	COG1858	cytochrome C peroxidase
RIMD111065_08590	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
RIMD111065_08600	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
RIMD111065_08700	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
RIMD111065_08720	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_08730	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
RIMD111065_08750	COG0521	Mo-molybdopterin cofactor biosynthetic process
RIMD111065_08770	COG2966	Psort location CytoplasmicMembrane, score
RIMD111065_08780	COG3610	response to peptide
RIMD111065_08800	COG4175	Glycine betaine
RIMD111065_08810	COG4176	ABC-type proline glycine betaine transport system permease component
RIMD111065_08820	COG2113	Glycine betaine
RIMD111065_08830	COG0175	sulfate reduction
RIMD111065_08840	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
RIMD111065_08850	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
RIMD111065_08860	COG0384	phenazine biosynthesis protein PhzF
RIMD111065_08870	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
RIMD111065_08880	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
RIMD111065_08900	COG0786	glutamate:sodium symporter activity
RIMD111065_08910	COG0252	asparaginase activity
RIMD111065_08920	COG3139	Protein of unknown function (DUF1315)
RIMD111065_08960	COG0616	signal peptide processing
RIMD111065_08970	COG0446	pyridine nucleotide-disulphide oxidoreductase
RIMD111065_08970	COG1902	pentaerythritol trinitrate reductase activity
RIMD111065_08980	COG0778	Nitroreductase
RIMD111065_09010	COG2264	protein methyltransferase activity
RIMD111065_09020	COG0604	alcohol dehydrogenase
RIMD111065_09030	COG0583	DNA-binding transcription factor activity
RIMD111065_09040	COG1263	PTS System
RIMD111065_09040	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_09040	COG2190	(PTS) system
RIMD111065_09050	COG4145	pantothenate transmembrane transporter activity
RIMD111065_09070	COG0439	Biotin carboxylase
RIMD111065_09080	COG0511	ligase activity, forming carbon-carbon bonds
RIMD111065_09090	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
RIMD111065_09100	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
RIMD111065_09110	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
RIMD111065_09130	COG5001	Diguanylate cyclase
RIMD111065_09130	COG3300	MHYT domain
RIMD111065_09170	COG3381	protein complex oligomerization
RIMD111065_09200	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
RIMD111065_09220	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
RIMD111065_09230	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
RIMD111065_09230	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
RIMD111065_09260	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
RIMD111065_09270	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RIMD111065_09280	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
RIMD111065_09290	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
RIMD111065_09300	COG4172	Belongs to the ABC transporter superfamily
RIMD111065_09320	COG0601	transmembrane transport
RIMD111065_09340	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
RIMD111065_09350	COG0142	geranyltranstransferase activity
RIMD111065_09360	COG1722	exodeoxyribonuclease VII activity
RIMD111065_09370	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
RIMD111065_09380	COG1360	Flagellar Motor Protein
RIMD111065_09410	COG1534	Rna-binding protein
RIMD111065_09420	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
RIMD111065_09440	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
RIMD111065_09450	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
RIMD111065_09460	COG0149	triose-phosphate isomerase activity
RIMD111065_09470	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
RIMD111065_09480	COG0779	Required for maturation of 30S ribosomal subunits
RIMD111065_09490	COG0195	Participates in both transcription termination and antitermination
RIMD111065_09500	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
RIMD111065_09510	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
RIMD111065_09520	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
RIMD111065_09530	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
RIMD111065_09540	COG1185	polyribonucleotide nucleotidyltransferase activity
RIMD111065_09550	COG2211	Major facilitator Superfamily
RIMD111065_09570	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
RIMD111065_09590	COG0114	fumarate hydratase activity
RIMD111065_09610	COG1966	Carbon starvation protein
RIMD111065_09630	COG3279	Response regulator of the LytR AlgR family
RIMD111065_09640	COG3275	phosphorelay sensor kinase activity
RIMD111065_09780	COG0312	modulator of DNA gyrase
RIMD111065_09790	COG0312	modulator of DNA gyrase
RIMD111065_09810	COG4974	Belongs to the 'phage' integrase family
RIMD111065_09830	COG1970	mechanosensitive ion channel activity
RIMD111065_09840	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
RIMD111065_09870	COG0789	Transcriptional regulator
RIMD111065_09900	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
RIMD111065_09910	COG0596	Alpha beta hydrolase
RIMD111065_09930	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
RIMD111065_09940	COG0321	lipoyl(octanoyl) transferase activity
RIMD111065_09950	COG2921	Belongs to the UPF0250 family
RIMD111065_09960	COG1686	Belongs to the peptidase S11 family
RIMD111065_09970	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
RIMD111065_09980	COG2951	lytic endotransglycosylase activity
RIMD111065_09990	COG0772	Belongs to the SEDS family
RIMD111065_10000	COG0768	penicillin binding
RIMD111065_10010	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
RIMD111065_10020	COG0799	negative regulation of ribosome biogenesis
RIMD111065_10030	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
RIMD111065_10070	COG0495	leucyl-tRNA aminoacylation
RIMD111065_10080	COG2888	peptidyl-tyrosine sulfation
RIMD111065_10090	COG0815	Transfers the fatty acyl group on membrane lipoproteins
RIMD111065_10100	COG4535	Mg2 and Co2 transporter CorC
RIMD111065_10110	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
RIMD111065_10120	COG1702	phosphate starvation-inducible protein PhoH
RIMD111065_10130	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
RIMD111065_10140	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
RIMD111065_10150	COG1335	isochorismatase
RIMD111065_10170	COG3706	GGDEF domain
RIMD111065_10200	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RIMD111065_10220	COG3706	GGDEF domain
RIMD111065_10240	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
RIMD111065_10260	COG3647	Membrane
RIMD111065_10270	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
RIMD111065_10290	COG0516	GMP reductase activity
RIMD111065_10310	COG0642	Histidine kinase
RIMD111065_10390	COG3214	Protein conserved in bacteria
RIMD111065_10440	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
RIMD111065_10450	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
RIMD111065_10460	COG1053	succinate dehydrogenase
RIMD111065_10480	COG0584	glycerophosphoryl diester phosphodiesterase
RIMD111065_10490	COG1511	domain protein
RIMD111065_10490	COG3264	Mechanosensitive ion channel
RIMD111065_10510	COG0739	heme binding
RIMD111065_10540	COG0583	DNA-binding transcription factor activity
RIMD111065_10580	COG0583	DNA-binding transcription factor activity
RIMD111065_10590	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
RIMD111065_10650	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
RIMD111065_10660	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
RIMD111065_10680	COG0338	D12 class N6 adenine-specific DNA methyltransferase
RIMD111065_10690	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
RIMD111065_10710	COG0180	Tryptophanyl-tRNA synthetase
RIMD111065_10740	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
RIMD111065_10760	COG1012	belongs to the aldehyde dehydrogenase family
RIMD111065_10780	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RIMD111065_10800	COG0674	pyruvate-flavodoxin oxidoreductase activity
RIMD111065_10800	COG1013	pyruvate-flavodoxin oxidoreductase activity
RIMD111065_10800	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_10800	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
RIMD111065_10820	COG0366	Alpha amylase catalytic
RIMD111065_10860	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
RIMD111065_10880	COG0471	metal ion transport
RIMD111065_10880	COG0490	domain, Protein
RIMD111065_10910	COG1349	DNA-binding transcription factor activity
RIMD111065_10930	COG2222	sugar isomerase
RIMD111065_10940	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
RIMD111065_10960	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_10970	COG3715	PTS system
RIMD111065_10980	COG3716	PTS system mannose fructose sorbose family IID component
RIMD111065_11010	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_11030	COG0641	radical SAM
RIMD111065_11040	COG3119	arylsulfatase activity
RIMD111065_11060	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RIMD111065_11070	COG0800	Aldolase
RIMD111065_11090	COG3119	arylsulfatase activity
RIMD111065_11100	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
RIMD111065_11120	COG0012	GTP binding
RIMD111065_11130	COG0193	aminoacyl-tRNA hydrolase activity
RIMD111065_11140	COG0737	Belongs to the 5'-nucleotidase family
RIMD111065_11150	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
RIMD111065_11160	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
RIMD111065_11170	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
RIMD111065_11180	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
RIMD111065_11190	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
RIMD111065_11200	COG2890	protein-(glutamine-N5) methyltransferase activity
RIMD111065_11220	COG2912	Transglutaminase-like superfamily
RIMD111065_11230	COG2877	3-deoxy-8-phosphooctulonate synthase activity
RIMD111065_11240	COG1301	dicarboxylic acid transport
RIMD111065_11260	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
RIMD111065_11290	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
RIMD111065_11300	COG1115	amino acid carrier protein
RIMD111065_11330	COG0714	Associated with various cellular activities
RIMD111065_11380	COG3104	oligopeptide transport
RIMD111065_11390	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
RIMD111065_11400	COG1678	Uncharacterized ACR, COG1678
RIMD111065_11420	COG0189	ligase activity
RIMD111065_11430	COG1385	rRNA (uridine-N3-)-methyltransferase activity
RIMD111065_11450	COG3091	SprT-like family
RIMD111065_11470	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
RIMD111065_11510	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
RIMD111065_11520	COG0739	heme binding
RIMD111065_11530	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
RIMD111065_11540	COG3408	Glycogen debranching enzyme
RIMD111065_11540	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
RIMD111065_11560	COG1881	PFAM PEBP family protein
RIMD111065_11570	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
RIMD111065_11580	COG0583	DNA-binding transcription factor activity
RIMD111065_11600	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
RIMD111065_11620	COG0583	DNA-binding transcription factor activity
RIMD111065_11630	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_11640	COG0616	signal peptide processing
RIMD111065_11650	COG3724	N-succinylarginine dihydrolase activity
RIMD111065_11690	COG0840	transmembrane signaling receptor activity
RIMD111065_11720	COG2971	BadF BadG BcrA BcrD
RIMD111065_11740	COG4608	Belongs to the ABC transporter superfamily
RIMD111065_11750	COG0444	Belongs to the ABC transporter superfamily
RIMD111065_11760	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RIMD111065_11770	COG0601	transmembrane transport
RIMD111065_11780	COG4166	transmembrane transport
RIMD111065_11790	COG0784	Response regulator, receiver
RIMD111065_11790	COG2205	protein histidine kinase activity
RIMD111065_11840	COG3220	belongs to the UPF0276 family
RIMD111065_11900	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
RIMD111065_11910	COG1289	transmembrane transporter activity
RIMD111065_11920	COG0303	'Molybdopterin
RIMD111065_11930	COG0746	molybdenum cofactor guanylyltransferase activity
RIMD111065_11950	COG4662	Binding-protein-dependent transport system inner membrane component
RIMD111065_11970	COG2204	response regulator
RIMD111065_11980	COG3852	Histidine kinase
RIMD111065_11990	COG1910	domain protein
RIMD111065_12000	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
RIMD111065_12080	COG3383	formate dehydrogenase (NAD+) activity
RIMD111065_12080	COG3383	formate dehydrogenase (NAD+) activity
RIMD111065_12090	COG0437	4 iron, 4 sulfur cluster binding
RIMD111065_12120	COG0281	malic enzyme
RIMD111065_12160	COG2706	6-phosphogluconolactonase activity
RIMD111065_12180	COG3264	Mechanosensitive ion channel
RIMD111065_12180	COG1196	nuclear chromosome segregation
RIMD111065_12190	COG0469	pyruvate kinase activity
RIMD111065_12230	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
RIMD111065_12230	COG4651	solute:proton antiporter activity
RIMD111065_12250	COG2974	May be involved in recombination
RIMD111065_12270	COG0420	3'-5' exonuclease activity
RIMD111065_12280	COG0419	ATPase involved in DNA repair
RIMD111065_12300	COG3038	cytochrome b561
RIMD111065_12330	COG2190	(PTS) system
RIMD111065_12350	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_12360	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
RIMD111065_12370	COG0542	response to heat
RIMD111065_12400	COG1720	tRNA m6t6A37 methyltransferase activity
RIMD111065_12440	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
RIMD111065_12450	COG4988	ABC transporter
RIMD111065_12460	COG0745	RESPONSE REGULATOR receiver
RIMD111065_12480	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
RIMD111065_12510	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
RIMD111065_12520	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
RIMD111065_12540	COG0083	homoserine kinase activity
RIMD111065_12550	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
RIMD111065_12600	COG0813	purine-nucleoside phosphorylase activity
RIMD111065_12640	COG2205	protein histidine kinase activity
RIMD111065_12640	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_12650	COG3384	dioxygenase
RIMD111065_12670	COG1283	sodium-dependent phosphate transmembrane transporter activity
RIMD111065_12690	COG0531	amino acid
RIMD111065_12710	COG0531	amino acid
RIMD111065_12750	COG1917	Cupin 2, conserved barrel domain protein
RIMD111065_12750	COG1396	sequence-specific DNA binding
RIMD111065_12760	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RIMD111065_12790	COG3152	Membrane
RIMD111065_12830	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
RIMD111065_12840	COG2375	cellular response to nickel ion
RIMD111065_12860	COG1136	(ABC) transporter
RIMD111065_12860	COG0577	efflux transmembrane transporter activity
RIMD111065_12870	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_12890	COG1227	inorganic diphosphatase activity
RIMD111065_12900	COG0497	DNA recombination
RIMD111065_12910	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
RIMD111065_12920	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
RIMD111065_12930	COG0443	Heat shock 70 kDa protein
RIMD111065_12940	COG0484	heat shock protein binding
RIMD111065_13000	COG1285	pathogenesis
RIMD111065_13040	COG0640	Transcriptional regulator
RIMD111065_13100	COG0095	Lipoate-protein ligase
RIMD111065_13140	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
RIMD111065_13150	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_13190	COG0708	Exodeoxyribonuclease III
RIMD111065_13230	COG2211	Major facilitator Superfamily
RIMD111065_13320	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
RIMD111065_13330	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
RIMD111065_13340	COG1845	cytochrome c oxidase, subunit III
RIMD111065_13350	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
RIMD111065_13360	COG0109	protoheme IX farnesyltransferase activity
RIMD111065_13370	COG2814	Major facilitator Superfamily
RIMD111065_13380	COG2205	protein histidine kinase activity
RIMD111065_13380	COG0784	Response regulator, receiver
RIMD111065_13380	COG2198	Histidine kinase
RIMD111065_13390	COG1879	ABC-type sugar transport system periplasmic component
RIMD111065_13410	COG0745	RESPONSE REGULATOR receiver
RIMD111065_13420	COG3005	denitrification pathway
RIMD111065_13440	COG3381	protein complex oligomerization
RIMD111065_13510	COG2003	Belongs to the UPF0758 family
RIMD111065_13590	COG0583	DNA-binding transcription factor activity
RIMD111065_13620	COG0549	Belongs to the carbamate kinase family
RIMD111065_13630	COG1304	FMN binding
RIMD111065_13640	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
RIMD111065_13650	COG1335	isochorismatase
RIMD111065_13660	COG3311	Transcriptional regulator
RIMD111065_13710	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RIMD111065_13840	COG0159	tryptophan synthase activity
RIMD111065_13850	COG0133	tryptophan synthase activity
RIMD111065_13860	COG0135	phosphoribosylanthranilate isomerase activity
RIMD111065_13860	COG0134	indole-3-glycerol-phosphate synthase activity
RIMD111065_13870	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
RIMD111065_13880	COG0512	Glutamine amidotransferase of anthranilate synthase
RIMD111065_13880	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
RIMD111065_13890	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
RIMD111065_13910	COG0009	L-threonylcarbamoyladenylate synthase
RIMD111065_13930	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
RIMD111065_13950	COG1946	Acyl-CoA thioesterase
RIMD111065_13980	COG1309	transcriptional regulator
RIMD111065_13990	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_14000	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
RIMD111065_14030	COG1091	dTDP-4-dehydrorhamnose reductase activity
RIMD111065_14090	COG3754	Rhamnan synthesis protein F
RIMD111065_14100	COG1215	transferase activity, transferring glycosyl groups
RIMD111065_14130	COG2895	sulfate adenylyltransferase (ATP) activity
RIMD111065_14140	COG3273	potassium ion transport
RIMD111065_14140	COG0471	metal ion transport
RIMD111065_14150	COG0529	Catalyzes the synthesis of activated sulfate
RIMD111065_14180	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
RIMD111065_14220	COG1088	dTDP-glucose 4,6-dehydratase activity
RIMD111065_14230	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
RIMD111065_14290	COG1086	Polysaccharide biosynthesis protein
RIMD111065_14340	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
RIMD111065_14350	COG3206	protein involved in exopolysaccharide biosynthesis
RIMD111065_14350	COG0489	protein tyrosine kinase activity
RIMD111065_14390	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
RIMD111065_14410	COG3132	Protein of unknown function, DUF480
RIMD111065_14490	COG1278	Cold shock
RIMD111065_14550	COG0697	spore germination
RIMD111065_14560	COG1349	DNA-binding transcription factor activity
RIMD111065_14570	COG1882	Formate acetyltransferase
RIMD111065_14580	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RIMD111065_14590	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
RIMD111065_14650	COG0622	Phosphoesterase
RIMD111065_14680	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
RIMD111065_14690	COG0784	Response regulator, receiver
RIMD111065_14690	COG0835	chemotaxis
RIMD111065_14700	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
RIMD111065_14710	COG1815	bacterial-type flagellum-dependent cell motility
RIMD111065_14750	COG4787	bacterial-type flagellum-dependent cell motility
RIMD111065_14770	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
RIMD111065_14780	COG1706	bacterial-type flagellum-dependent cell motility
RIMD111065_14790	COG1705	Flagellar rod assembly protein muramidase FlgJ
RIMD111065_14790	COG3951	Flagellar rod assembly protein muramidase FlgJ
RIMD111065_14800	COG1256	bacterial-type flagellum assembly
RIMD111065_14820	COG2239	Acts as a magnesium transporter
RIMD111065_14840	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
RIMD111065_14850	COG2716	regulation of RNA biosynthetic process
RIMD111065_14900	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
RIMD111065_14910	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
RIMD111065_14920	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
RIMD111065_14930	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
RIMD111065_14970	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
RIMD111065_14990	COG0590	tRNA wobble adenosine to inosine editing
RIMD111065_15000	COG0573	inorganic phosphate transmembrane transporter activity
RIMD111065_15010	COG0581	inorganic phosphate transmembrane transporter activity
RIMD111065_15020	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
RIMD111065_15030	COG0704	Plays a role in the regulation of phosphate uptake
RIMD111065_15040	COG1253	flavin adenine dinucleotide binding
RIMD111065_15070	COG0531	amino acid
RIMD111065_15110	COG1126	abc transporter atp-binding protein
RIMD111065_15120	COG0765	amino acid transport
RIMD111065_15130	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_15150	COG2271	Major facilitator Superfamily
RIMD111065_15180	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
RIMD111065_15230	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
RIMD111065_15240	COG0477	Major facilitator Superfamily
RIMD111065_15250	COG0123	including yeast histone deacetylase and acetoin utilization protein
RIMD111065_15270	COG1199	ATP-dependent helicase activity
RIMD111065_15300	COG1448	Aminotransferase
RIMD111065_15310	COG0433	COG0433 Predicted ATPase
RIMD111065_15340	COG0658	competence protein
RIMD111065_15340	COG2333	competence protein COMEC
RIMD111065_15360	COG1663	tetraacyldisaccharide 4'-kinase activity
RIMD111065_15370	COG2835	tetraacyldisaccharide 4'-kinase activity
RIMD111065_15380	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
RIMD111065_15390	COG2197	response regulator
RIMD111065_15400	COG0322	excinuclease ABC activity
RIMD111065_15480	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
RIMD111065_15490	COG0437	4 iron, 4 sulfur cluster binding
RIMD111065_15500	COG3301	Polysulphide reductase, NrfD
RIMD111065_15510	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
RIMD111065_15530	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
RIMD111065_15570	COG2203	Gaf domain
RIMD111065_15570	COG2199	diguanylate cyclase activity
RIMD111065_15630	COG2119	membrane
RIMD111065_15640	COG0023	Translation Initiation Factor
RIMD111065_15690	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
RIMD111065_15720	COG2205	protein histidine kinase activity
RIMD111065_15720	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_15740	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
RIMD111065_15760	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
RIMD111065_15770	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
RIMD111065_15780	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
RIMD111065_15790	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
RIMD111065_15800	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
RIMD111065_15820	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
RIMD111065_15830	COG0505	Belongs to the CarA family
RIMD111065_15840	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
RIMD111065_15850	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
RIMD111065_15930	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RIMD111065_15940	COG0513	Belongs to the DEAD box helicase family
RIMD111065_15960	COG4104	PAAR repeat-containing protein
RIMD111065_15990	COG0789	Transcriptional regulator
RIMD111065_16020	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_16030	COG0765	amino acid transport
RIMD111065_16040	COG1126	abc transporter atp-binding protein
RIMD111065_16050	COG0493	'glutamate synthase
RIMD111065_16060	COG0067	glutamate synthase
RIMD111065_16060	COG0069	glutamate synthase activity
RIMD111065_16060	COG0070	glutamate synthase
RIMD111065_16070	COG1242	4 iron, 4 sulfur cluster binding
RIMD111065_16200	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
RIMD111065_16210	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
RIMD111065_16210	COG0574	Belongs to the PEP-utilizing enzyme family
RIMD111065_16270	COG1464	Belongs to the NlpA lipoprotein family
RIMD111065_16280	COG0671	phosphoesterase, PA-phosphatase related
RIMD111065_16300	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
RIMD111065_16310	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
RIMD111065_16330	COG0101	tRNA pseudouridine synthase activity
RIMD111065_16340	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
RIMD111065_16350	COG0285	dihydrofolate synthase activity
RIMD111065_16360	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
RIMD111065_16370	COG2920	part of a sulfur-relay system
RIMD111065_16380	COG1289	transmembrane transporter activity
RIMD111065_16390	COG0670	Belongs to the BI1 family
RIMD111065_16430	COG2194	sulfuric ester hydrolase activity
RIMD111065_16440	COG0392	lysyltransferase activity
RIMD111065_16440	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
RIMD111065_16460	COG0840	transmembrane signaling receptor activity
RIMD111065_16470	COG5001	Diguanylate cyclase
RIMD111065_16480	COG0564	pseudouridine synthase activity
RIMD111065_16510	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
RIMD111065_16530	COG0625	glutathione transferase activity
RIMD111065_16540	COG0625	glutathione transferase activity
RIMD111065_16560	COG0367	asparagine synthase
RIMD111065_16580	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
RIMD111065_16580	COG4651	solute:proton antiporter activity
RIMD111065_16590	COG0647	UMP catabolic process
RIMD111065_16600	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
RIMD111065_16610	COG1902	pentaerythritol trinitrate reductase activity
RIMD111065_16620	COG1253	flavin adenine dinucleotide binding
RIMD111065_16640	COG0277	FAD linked oxidase domain protein
RIMD111065_16640	COG0247	lactate metabolic process
RIMD111065_16660	COG2050	protein possibly involved in aromatic compounds catabolism
RIMD111065_16680	COG2056	Na+-H+ antiporter family
RIMD111065_16690	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
RIMD111065_16720	COG0346	lactoylglutathione lyase activity
RIMD111065_16730	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
RIMD111065_16740	COG4660	Part of a membrane complex involved in electron transport
RIMD111065_16750	COG4659	FMN binding
RIMD111065_16760	COG4658	electron transport chain
RIMD111065_16780	COG2878	Part of a membrane complex involved in electron transport
RIMD111065_16790	COG4657	Part of a membrane complex involved in electron transport
RIMD111065_16800	COG0697	spore germination
RIMD111065_16830	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
RIMD111065_16840	COG1288	antiporter activity
RIMD111065_16850	COG0436	Aminotransferase
RIMD111065_16870	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
RIMD111065_16880	COG2027	D-alanyl-D-alanine carboxypeptidase
RIMD111065_16890	COG1061	Type III restriction enzyme res subunit
RIMD111065_16900	COG1566	PFAM secretion protein HlyD family protein
RIMD111065_16920	COG1966	Carbon starvation protein
RIMD111065_16930	COG3279	Response regulator of the LytR AlgR family
RIMD111065_16940	COG3275	phosphorelay sensor kinase activity
RIMD111065_16950	COG2199	diguanylate cyclase activity
RIMD111065_16950	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
RIMD111065_16960	COG1454	alcohol dehydrogenase
RIMD111065_16960	COG1012	belongs to the aldehyde dehydrogenase family
RIMD111065_16980	COG2095	MarC family integral membrane protein
RIMD111065_17000	COG0601	transmembrane transport
RIMD111065_17010	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RIMD111065_17040	COG0861	Integral membrane protein TerC family
RIMD111065_17050	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
RIMD111065_17070	COG1301	dicarboxylic acid transport
RIMD111065_17090	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
RIMD111065_17120	COG0537	adenosine 5'-monophosphoramidase activity
RIMD111065_17190	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RIMD111065_17200	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RIMD111065_17220	COG2354	Protein conserved in bacteria
RIMD111065_17230	COG1164	Oligoendopeptidase f
RIMD111065_17250	COG2233	PERMEase
RIMD111065_17260	COG3150	esterase
RIMD111065_17270	COG1252	NADH dehydrogenase
RIMD111065_17310	COG0393	Putative heavy-metal-binding
RIMD111065_17330	COG1648	precorrin-2 dehydrogenase activity
RIMD111065_17330	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
RIMD111065_17370	COG4667	esterase of the alpha-beta hydrolase superfamily
RIMD111065_17380	COG1619	proteins homologs of microcin C7 resistance protein MccF
RIMD111065_17390	COG1368	sulfuric ester hydrolase activity
RIMD111065_17410	COG0527	aspartate kinase activity
RIMD111065_17420	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
RIMD111065_17420	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
RIMD111065_17430	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
RIMD111065_17470	COG0596	Alpha beta hydrolase
RIMD111065_17480	COG0346	lactoylglutathione lyase activity
RIMD111065_17500	COG0583	DNA-binding transcription factor activity
RIMD111065_17510	COG1620	l-lactate permease
RIMD111065_17520	COG0247	lactate metabolic process
RIMD111065_17530	COG1139	Iron-sulfur cluster binding protein
RIMD111065_17600	COG0577	efflux transmembrane transporter activity
RIMD111065_17610	COG1136	(ABC) transporter
RIMD111065_17630	COG2814	Major facilitator Superfamily
RIMD111065_17670	COG0672	)-iron permease
RIMD111065_17710	COG0659	secondary active sulfate transmembrane transporter activity
RIMD111065_17740	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
RIMD111065_17750	COG0840	transmembrane signaling receptor activity
RIMD111065_17770	COG2201	protein-glutamate methylesterase activity
RIMD111065_17800	COG0840	transmembrane signaling receptor activity
RIMD111065_17810	COG0643	Histidine kinase
RIMD111065_17810	COG2198	Histidine kinase
RIMD111065_17830	COG0745	RESPONSE REGULATOR receiver
RIMD111065_17840	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
RIMD111065_17850	COG0437	4 iron, 4 sulfur cluster binding
RIMD111065_17860	COG5557	Pfam Polysulphide reductase, NrfD
RIMD111065_17870	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
RIMD111065_17880	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
RIMD111065_17890	COG1773	rubredoxin
RIMD111065_17910	COG0601	transmembrane transport
RIMD111065_17920	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RIMD111065_17930	COG0444	Belongs to the ABC transporter superfamily
RIMD111065_17940	COG3842	ATPase activity
RIMD111065_17950	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
RIMD111065_17970	COG0375	protein maturation
RIMD111065_17980	COG0309	Hydrogenase expression formation protein (HypE)
RIMD111065_18000	COG0298	carbon dioxide binding
RIMD111065_18010	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
RIMD111065_18030	COG1921	L-seryl-tRNASec selenium transferase activity
RIMD111065_18040	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
RIMD111065_18060	COG3260	NADH ubiquinone oxidoreductase 20
RIMD111065_18070	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_18080	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
RIMD111065_18080	COG3261	NADH dehydrogenase
RIMD111065_18090	COG0650	Formate hydrogenlyase subunit 4
RIMD111065_18100	COG0651	ATP synthesis coupled electron transport
RIMD111065_18110	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_18120	COG3158	transport of potassium into the cell
RIMD111065_18140	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_18190	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
RIMD111065_18200	COG0326	Molecular chaperone. Has ATPase activity
RIMD111065_18210	COG0563	adenylate kinase activity
RIMD111065_18220	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
RIMD111065_18240	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RIMD111065_18270	COG3300	MHYT domain
RIMD111065_18270	COG5001	Diguanylate cyclase
RIMD111065_18280	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
RIMD111065_18330	COG1021	2,3-dihydroxybenzoate-AMP ligase
RIMD111065_18340	COG1535	isochorismatase
RIMD111065_18340	COG3433	isochorismatase activity
RIMD111065_18350	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
RIMD111065_18360	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_18380	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
RIMD111065_18390	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
RIMD111065_18410	COG1120	ATPase activity
RIMD111065_18420	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RIMD111065_18430	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RIMD111065_18440	COG4771	TonB-dependent receptor
RIMD111065_18520	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
RIMD111065_18530	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
RIMD111065_18540	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
RIMD111065_18570	COG1570	exodeoxyribonuclease VII activity
RIMD111065_18580	COG0697	spore germination
RIMD111065_18620	COG3119	arylsulfatase activity
RIMD111065_18630	COG0641	radical SAM
RIMD111065_18650	COG3158	transport of potassium into the cell
RIMD111065_18660	COG0516	GMP reductase activity
RIMD111065_18660	COG0517	IMP dehydrogenase activity
RIMD111065_18670	COG0519	Catalyzes the synthesis of GMP from XMP
RIMD111065_18670	COG0518	GMP synthase (glutamine-hydrolyzing) activity
RIMD111065_18760	COG2062	phosphohistidine phosphatase, SixA
RIMD111065_18780	COG0697	spore germination
RIMD111065_18790	COG4166	transmembrane transport
RIMD111065_18800	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
RIMD111065_18810	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
RIMD111065_18830	COG4591	ABC-type transport system involved in lipoprotein release permease component
RIMD111065_18840	COG1136	(ABC) transporter
RIMD111065_18850	COG4591	ABC-type transport system involved in lipoprotein release permease component
RIMD111065_18860	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
RIMD111065_18880	COG0544	peptidyl-prolyl cis-trans isomerase activity
RIMD111065_18890	COG0740	serine-type endopeptidase activity
RIMD111065_18900	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
RIMD111065_18910	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
RIMD111065_18920	COG0776	regulation of translation
RIMD111065_18930	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
RIMD111065_18940	COG0488	(ABC) transporter
RIMD111065_18950	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
RIMD111065_18960	COG3162	membrane
RIMD111065_19050	COG1115	amino acid carrier protein
RIMD111065_19080	COG1584	GPR1 FUN34 yaaH family protein
RIMD111065_19150	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
RIMD111065_19160	COG1960	acyl-CoA dehydrogenase activity
RIMD111065_19180	COG1960	acyl-CoA dehydrogenase activity
RIMD111065_19190	COG1024	Enoyl-CoA hydratase
RIMD111065_19200	COG1024	Enoyl-CoA hydratase
RIMD111065_19220	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_19240	COG0730	response to heat
RIMD111065_19430	COG2203	Gaf domain
RIMD111065_19430	COG2200	EAL domain
RIMD111065_19430	COG2199	diguanylate cyclase activity
RIMD111065_19440	COG0583	DNA-binding transcription factor activity
RIMD111065_19450	COG2723	6-phospho-beta-galactosidase activity
RIMD111065_19460	COG5001	Diguanylate cyclase
RIMD111065_19460	COG3300	MHYT domain
RIMD111065_19480	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
RIMD111065_19500	COG0583	DNA-binding transcription factor activity
RIMD111065_19510	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
RIMD111065_19520	COG0673	inositol 2-dehydrogenase activity
RIMD111065_19530	COG0583	DNA-binding transcription factor activity
RIMD111065_19550	COG1560	Kdo2-lipid A biosynthetic process
RIMD111065_19560	COG1560	Kdo2-lipid A biosynthetic process
RIMD111065_19610	COG0417	DNA replication proofreading
RIMD111065_19620	COG0534	Mate efflux family protein
RIMD111065_19640	COG0307	riboflavin synthase, alpha
RIMD111065_19660	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RIMD111065_19670	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
RIMD111065_19680	COG0697	spore germination
RIMD111065_19700	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
RIMD111065_19780	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
RIMD111065_19790	COG3099	Belongs to the UPF0263 family
RIMD111065_19800	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
RIMD111065_19810	COG2894	cell division
RIMD111065_19820	COG0850	regulation of cytokinetic process
RIMD111065_19830	COG3100	YcgL domain-containing protein
RIMD111065_19840	COG2951	lytic endotransglycosylase activity
RIMD111065_19850	COG1760	l-serine dehydratase
RIMD111065_19860	COG1760	l-serine dehydratase
RIMD111065_19870	COG3123	guanosine phosphorylase activity
RIMD111065_19910	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
RIMD111065_19920	COG2067	long-chain fatty acid transport protein
RIMD111065_19950	COG1595	DNA-templated transcription, initiation
RIMD111065_20010	COG0714	Associated with various cellular activities
RIMD111065_20020	COG0183	Belongs to the thiolase family
RIMD111065_20030	COG1024	Enoyl-CoA hydratase
RIMD111065_20030	COG1250	3-hydroxyacyl-CoA dehydrogenase
RIMD111065_20100	COG3829	transcription factor binding
RIMD111065_20110	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
RIMD111065_20120	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
RIMD111065_20130	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
RIMD111065_20150	COG0549	Belongs to the carbamate kinase family
RIMD111065_20160	COG0697	spore germination
RIMD111065_20170	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
RIMD111065_20170	COG3608	succinylglutamate desuccinylase aspartoacylase
RIMD111065_20180	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
RIMD111065_20200	COG0493	'glutamate synthase
RIMD111065_20200	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_20210	COG0402	S-adenosylhomocysteine deaminase activity
RIMD111065_20220	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
RIMD111065_20230	COG2080	2 iron, 2 sulfur cluster binding
RIMD111065_20230	COG1529	Aldehyde oxidase and xanthine dehydrogenase
RIMD111065_20240	COG2233	PERMEase
RIMD111065_20250	COG0402	S-adenosylhomocysteine deaminase activity
RIMD111065_20260	COG2252	PERMEase
RIMD111065_20270	COG1529	Aldehyde oxidase and xanthine dehydrogenase
RIMD111065_20280	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
RIMD111065_20290	COG2080	2 iron, 2 sulfur cluster binding
RIMD111065_20310	COG3134	Outer membrane lipoprotein
RIMD111065_20340	COG1288	antiporter activity
RIMD111065_20350	COG0318	PFAM AMP-dependent synthetase and ligase
RIMD111065_20360	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
RIMD111065_20360	COG0140	phosphoribosyl-ATP diphosphatase activity
RIMD111065_20370	COG0107	imidazoleglycerol-phosphate synthase activity
RIMD111065_20380	COG0784	Response regulator, receiver
RIMD111065_20380	COG2205	protein histidine kinase activity
RIMD111065_20380	COG2198	Histidine kinase
RIMD111065_20390	COG2199	diguanylate cyclase activity
RIMD111065_20400	COG3437	response regulator, receiver
RIMD111065_20410	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
RIMD111065_20420	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
RIMD111065_20430	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
RIMD111065_20430	COG0131	Imidazoleglycerol-phosphate dehydratase
RIMD111065_20440	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
RIMD111065_20450	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
RIMD111065_20460	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
RIMD111065_20480	COG1199	ATP-dependent helicase activity
RIMD111065_20490	COG1214	PFAM Peptidase M22, glycoprotease
RIMD111065_20510	COG2226	methyltransferase
RIMD111065_20510	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
RIMD111065_20510	COG0596	Alpha beta hydrolase
RIMD111065_20520	COG0318	PFAM AMP-dependent synthetase and ligase
RIMD111065_20530	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
RIMD111065_20560	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
RIMD111065_20570	COG2832	Protein of unknown function (DUF454)
RIMD111065_20580	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
RIMD111065_20600	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
RIMD111065_20610	COG0582	viral genome integration into host DNA
RIMD111065_20700	COG5377	YqaJ viral recombinase family
RIMD111065_21290	COG0517	IMP dehydrogenase activity
RIMD111065_21290	COG0617	tRNA 3'-terminal CCA addition
RIMD111065_21290	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
RIMD111065_21300	COG1643	Atp-dependent helicase
RIMD111065_21320	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
RIMD111065_21340	COG3437	response regulator, receiver
RIMD111065_21350	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
RIMD111065_21360	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
RIMD111065_21370	COG0709	Synthesizes selenophosphate from selenide and ATP
RIMD111065_21410	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
RIMD111065_21420	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
RIMD111065_21430	COG0840	transmembrane signaling receptor activity
RIMD111065_21440	COG1254	Belongs to the acylphosphatase family
RIMD111065_21450	COG0625	glutathione transferase activity
RIMD111065_21460	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RIMD111065_21460	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RIMD111065_21470	COG0489	protein tyrosine kinase activity
RIMD111065_21480	COG0572	uridine kinase
RIMD111065_21490	COG0717	Belongs to the dCTP deaminase family
RIMD111065_21500	COG0306	phosphate transporter
RIMD111065_21510	COG1530	ribonuclease E activity
RIMD111065_21520	COG0564	pseudouridine synthase activity
RIMD111065_21530	COG0546	phosphoglycolate phosphatase activity
RIMD111065_21540	COG0424	maF-like protein
RIMD111065_21550	COG2814	Major facilitator Superfamily
RIMD111065_21580	COG1399	metal-binding, possibly nucleic acid-binding protein
RIMD111065_21590	COG0333	Belongs to the bacterial ribosomal protein bL32 family
RIMD111065_21600	COG0416	fatty acid biosynthetic process
RIMD111065_21610	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
RIMD111065_21630	COG1028	Short-chain dehydrogenase reductase Sdr
RIMD111065_21640	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
RIMD111065_21660	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
RIMD111065_21670	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
RIMD111065_21680	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
RIMD111065_21690	COG0470	DNA polymerase III
RIMD111065_21700	COG0084	hydrolase, TatD family'
RIMD111065_21730	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
RIMD111065_21730	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RIMD111065_21740	COG3008	intermembrane lipid transfer
RIMD111065_21750	COG2995	paraquat-inducible protein a
RIMD111065_21770	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
RIMD111065_21780	COG0372	Belongs to the citrate synthase family
RIMD111065_21870	COG4221	oxidoreductase activity
RIMD111065_21890	COG3141	response to X-ray
RIMD111065_21910	COG1067	ATP-dependent peptidase activity
RIMD111065_21920	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
RIMD111065_21950	COG0488	(ABC) transporter
RIMD111065_21970	COG0116	Belongs to the methyltransferase superfamily
RIMD111065_21970	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
RIMD111065_21990	COG0167	dihydroorotate dehydrogenase activity
RIMD111065_22000	COG2902	Dehydrogenase
RIMD111065_22020	COG0308	aminopeptidase N
RIMD111065_22040	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
RIMD111065_22050	COG1956	GAF domain-containing protein
RIMD111065_22070	COG3278	Belongs to the heme-copper respiratory oxidase family
RIMD111065_22100	COG2010	Cytochrome c
RIMD111065_22150	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
RIMD111065_22160	COG0589	response to stress
RIMD111065_22170	COG0037	tRNA processing
RIMD111065_22200	COG0625	glutathione transferase activity
RIMD111065_22210	COG1869	D-ribose catabolic process
RIMD111065_22220	COG1129	ABC transporter
RIMD111065_22230	COG1172	Belongs to the binding-protein-dependent transport system permease family
RIMD111065_22240	COG1879	ABC-type sugar transport system periplasmic component
RIMD111065_22250	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RIMD111065_22260	COG1609	Transcriptional regulator
RIMD111065_22270	COG5001	Diguanylate cyclase
RIMD111065_22270	COG3300	MHYT domain
RIMD111065_22330	COG0776	regulation of translation
RIMD111065_22340	COG0072	phenylalanine-tRNA ligase activity
RIMD111065_22340	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RIMD111065_22350	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
RIMD111065_22360	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
RIMD111065_22370	COG0291	Belongs to the bacterial ribosomal protein bL35 family
RIMD111065_22380	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
RIMD111065_22390	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
RIMD111065_22430	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
RIMD111065_22450	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RIMD111065_22460	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RIMD111065_22470	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
RIMD111065_22480	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
RIMD111065_22490	COG3313	Fe-S protein
RIMD111065_22500	COG2942	2-epimerase
RIMD111065_22510	COG3716	PTS system mannose fructose sorbose family IID component
RIMD111065_22520	COG3715	PTS system
RIMD111065_22530	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_22530	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_22560	COG1609	Transcriptional regulator
RIMD111065_22570	COG2140	Oxalate decarboxylase
RIMD111065_22580	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_22580	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_22580	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
RIMD111065_22590	COG1105	Belongs to the carbohydrate kinase PfkB family
RIMD111065_22600	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_22600	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_22610	COG1609	Transcriptional regulator
RIMD111065_22630	COG0814	amino acid
RIMD111065_22650	COG5654	RES domain protein
RIMD111065_22660	COG0513	Belongs to the DEAD box helicase family
RIMD111065_22680	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
RIMD111065_22690	COG2890	protein-(glutamine-N5) methyltransferase activity
RIMD111065_22700	COG2840	Smr protein MutS2
RIMD111065_22720	COG3706	GGDEF domain
RIMD111065_22730	COG0406	alpha-ribazole phosphatase activity
RIMD111065_22780	COG2824	Alkylphosphonate utilization operon protein PhnA
RIMD111065_22800	COG0384	phenazine biosynthesis protein PhzF
RIMD111065_22860	COG0242	peptide deformylase activity
RIMD111065_22900	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
RIMD111065_22910	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
RIMD111065_22930	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
RIMD111065_22940	COG1434	Gram-negative-bacterium-type cell wall biogenesis
RIMD111065_22960	COG0205	6-phosphofructokinase activity
RIMD111065_22970	COG1473	amidohydrolase
RIMD111065_22980	COG1011	Hydrolase
RIMD111065_22990	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
RIMD111065_23020	COG3593	DNA synthesis involved in DNA repair
RIMD111065_23050	COG0583	DNA-binding transcription factor activity
RIMD111065_23060	COG0730	response to heat
RIMD111065_23070	COG3148	PFAM DTW domain containing protein
RIMD111065_23090	COG1181	Belongs to the D-alanine--D-alanine ligase family
RIMD111065_23110	COG0386	Belongs to the glutathione peroxidase family
RIMD111065_23120	COG0513	Belongs to the DEAD box helicase family
RIMD111065_23130	COG0456	acetyltransferase
RIMD111065_23160	COG1742	UPF0060 membrane protein
RIMD111065_23230	COG2329	Antibiotic biosynthesis monooxygenase
RIMD111065_23240	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
RIMD111065_23280	COG3243	poly(R)-hydroxyalkanoic acid synthase
RIMD111065_23300	COG2501	S4 domain
RIMD111065_23320	COG1132	(ABC) transporter
RIMD111065_23330	COG1132	(ABC) transporter
RIMD111065_23350	COG3118	belongs to the thioredoxin family
RIMD111065_23360	COG0471	metal ion transport
RIMD111065_23370	COG0058	SHG alpha-glucan phosphorylase activity
RIMD111065_23430	COG0814	amino acid
RIMD111065_23440	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
RIMD111065_23450	COG0514	ATP-dependent DNA helicase (RecQ)
RIMD111065_23460	COG2766	serine protein kinase
RIMD111065_23480	COG2719	SpoVR family
RIMD111065_23490	COG2186	Transcriptional regulator
RIMD111065_23500	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
RIMD111065_23510	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
RIMD111065_23520	COG0586	Pfam SNARE associated Golgi protein
RIMD111065_23540	COG0556	nucleotide-excision repair
RIMD111065_23550	COG0569	domain protein
RIMD111065_23550	COG2985	domain, Protein
RIMD111065_23560	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
RIMD111065_23610	COG4565	transcriptional regulatory protein
RIMD111065_23620	COG3290	protein histidine kinase activity
RIMD111065_23630	COG1940	carbohydrate kinase activity
RIMD111065_23630	COG1846	Transcriptional regulator
RIMD111065_23640	COG0840	transmembrane signaling receptor activity
RIMD111065_23650	COG3012	SEC-C Motif Domain Protein
RIMD111065_23660	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
RIMD111065_23670	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
RIMD111065_23680	COG0247	lactate metabolic process
RIMD111065_23720	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
RIMD111065_23730	COG0437	4 iron, 4 sulfur cluster binding
RIMD111065_23740	COG3301	Polysulphide reductase, NrfD
RIMD111065_23750	COG1138	Cytochrome C-type biogenesis protein
RIMD111065_23770	COG3088	subunit of a heme lyase
RIMD111065_23770	COG4235	cytochrome complex assembly
RIMD111065_23780	COG1051	belongs to the nudix hydrolase family
RIMD111065_23800	COG3033	Beta-eliminating lyase
RIMD111065_23810	COG3046	protein related to deoxyribodipyrimidine photolyase
RIMD111065_23820	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RIMD111065_23870	COG0517	IMP dehydrogenase activity
RIMD111065_23870	COG0516	GMP reductase activity
RIMD111065_23890	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
RIMD111065_23920	COG4774	siderophore transport
RIMD111065_23950	COG0583	DNA-binding transcription factor activity
RIMD111065_23960	COG2910	NAD(P)H-binding
RIMD111065_23990	COG0612	Peptidase, M16
RIMD111065_24000	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
RIMD111065_24020	COG1944	ATP diphosphatase activity
RIMD111065_24030	COG2116	formate transmembrane transporter activity
RIMD111065_24040	COG1882	Formate acetyltransferase
RIMD111065_24050	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
RIMD111065_24060	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
RIMD111065_24070	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
RIMD111065_24090	COG1840	ABC-type Fe3 transport system, periplasmic component
RIMD111065_24100	COG3842	ATPase activity
RIMD111065_24120	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RIMD111065_24140	COG2983	Belongs to the UPF0260 family
RIMD111065_24160	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
RIMD111065_24170	COG0045	succinate-CoA ligase (ADP-forming) activity
RIMD111065_24180	COG0508	dehydrogenase complex catalyzes the overall conversion of
RIMD111065_24190	COG0567	Dehydrogenase, E1 component
RIMD111065_24210	COG1053	succinate dehydrogenase
RIMD111065_24220	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
RIMD111065_24270	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
RIMD111065_24280	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
RIMD111065_24280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RIMD111065_24300	COG3069	C4-dicarboxylate transmembrane transporter activity
RIMD111065_24330	COG1451	nucleotide metabolic process
RIMD111065_24360	COG0254	rRNA binding
RIMD111065_24380	COG0583	DNA-binding transcription factor activity
RIMD111065_24400	COG1172	Belongs to the binding-protein-dependent transport system permease family
RIMD111065_24420	COG1879	ABC-type sugar transport system periplasmic component
RIMD111065_24430	COG1069	ribulokinase activity
RIMD111065_24450	COG2160	L-arabinose isomerase activity
RIMD111065_24510	COG2916	Histone family protein nucleoid-structuring protein H-NS
RIMD111065_24570	COG0438	transferase activity, transferring glycosyl groups
RIMD111065_24700	COG0438	transferase activity, transferring glycosyl groups
RIMD111065_24710	COG1215	transferase activity, transferring glycosyl groups
RIMD111065_24720	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
RIMD111065_24810	COG2205	protein histidine kinase activity
RIMD111065_24810	COG0784	Response regulator, receiver
RIMD111065_24840	COG0753	catalase activity
RIMD111065_24900	COG0784	Response regulator, receiver
RIMD111065_24900	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
RIMD111065_24970	COG2925	Exonuclease
RIMD111065_24990	COG3345	alpha-galactosidase
RIMD111065_25000	COG1380	Effector of murein hydrolase LrgA
RIMD111065_25010	COG1346	cytolysis
RIMD111065_25020	COG0295	cytidine deaminase activity
RIMD111065_25030	COG1022	Amp-dependent synthetase and ligase
RIMD111065_25060	COG0861	Integral membrane protein TerC family
RIMD111065_25070	COG2885	chlorophyll binding
RIMD111065_25080	COG2199	diguanylate cyclase activity
RIMD111065_25110	COG2154	pterin-4-alpha-carbinolamine dehydratase
RIMD111065_25130	COG3768	UPF0283 membrane protein
RIMD111065_25140	COG3106	COG3106 Predicted ATPase
RIMD111065_25170	COG1842	Phage shock protein A
RIMD111065_25180	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
RIMD111065_25200	COG4168	peptide transport system, permease
RIMD111065_25210	COG4171	peptide transport system, permease
RIMD111065_25240	COG4172	Belongs to the ABC transporter superfamily
RIMD111065_25260	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
RIMD111065_25270	COG1286	toxin biosynthetic process
RIMD111065_25280	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
RIMD111065_25300	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
RIMD111065_25310	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
RIMD111065_25320	COG1674	ftsk spoiiie
RIMD111065_25320	COG0531	amino acid
RIMD111065_25340	COG0686	Belongs to the AlaDH PNT family
RIMD111065_25350	COG0492	ferredoxin-NADP+ reductase activity
RIMD111065_25360	COG3706	GGDEF domain
RIMD111065_25370	COG3134	Outer membrane lipoprotein
RIMD111065_25380	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
RIMD111065_25390	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
RIMD111065_25400	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
RIMD111065_25410	COG0542	response to heat
RIMD111065_25420	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
RIMD111065_25430	COG1278	Cold shock
RIMD111065_25440	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
RIMD111065_25540	COG3829	transcription factor binding
RIMD111065_25700	COG3501	Rhs element vgr protein
RIMD111065_25740	COG1435	thymidine kinase activity
RIMD111065_25750	COG1757	Na H antiporter
RIMD111065_25760	COG2916	Histone family protein nucleoid-structuring protein H-NS
RIMD111065_25770	COG2096	Adenosyltransferase
RIMD111065_25780	COG3530	Putative quorum-sensing-regulated virulence factor
RIMD111065_25790	COG0602	queuosine metabolic process
RIMD111065_25800	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
RIMD111065_25840	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
RIMD111065_25860	COG0776	regulation of translation
RIMD111065_25870	COG0539	negative regulation of cytoplasmic translation
RIMD111065_25880	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
RIMD111065_25890	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
RIMD111065_25910	COG0583	DNA-binding transcription factor activity
RIMD111065_25950	COG0778	Nitroreductase
RIMD111065_25960	COG5001	Diguanylate cyclase
RIMD111065_25960	COG3300	MHYT domain
RIMD111065_25980	COG0583	DNA-binding transcription factor activity
RIMD111065_25990	COG3437	response regulator, receiver
RIMD111065_26040	COG4989	oxidoreductase activity
RIMD111065_26050	COG0724	RNA recognition motif
RIMD111065_26090	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
RIMD111065_26110	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
RIMD111065_26120	COG1360	Flagellar Motor Protein
RIMD111065_26130	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_26140	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_26150	COG0649	NAD binding
RIMD111065_26150	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_26180	COG1034	ATP synthesis coupled electron transport
RIMD111065_26190	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
RIMD111065_26200	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_26210	COG0839	Belongs to the complex I subunit 6 family
RIMD111065_26220	COG0713	ATP synthesis coupled electron transport
RIMD111065_26240	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
RIMD111065_26250	COG1007	ATP synthesis coupled electron transport
RIMD111065_26280	COG2199	diguanylate cyclase activity
RIMD111065_26280	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
RIMD111065_26290	COG0047	phosphoribosylformylglycinamidine synthase activity
RIMD111065_26290	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
RIMD111065_26300	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
RIMD111065_26310	COG1645	bacterial-type flagellum-dependent swarming motility
RIMD111065_26320	COG1160	GTP binding
RIMD111065_26330	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
RIMD111065_26340	COG2976	Protein conserved in bacteria
RIMD111065_26350	COG0124	histidyl-tRNA synthetase
RIMD111065_26360	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
RIMD111065_26390	COG0820	rRNA (adenine-C2-)-methyltransferase activity
RIMD111065_26400	COG0105	UTP biosynthetic process
RIMD111065_26410	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
RIMD111065_26430	COG0633	Ferredoxin
RIMD111065_26440	COG0443	Heat shock 70 kDa protein
RIMD111065_26450	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
RIMD111065_26470	COG0822	iron-sulfur transferase activity
RIMD111065_26480	COG1104	cysteine desulfurase activity
RIMD111065_26520	COG3154	lipid carrier protein
RIMD111065_26530	COG0826	peptidase U32
RIMD111065_26540	COG0826	peptidase U32
RIMD111065_26570	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RIMD111065_26580	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
RIMD111065_26590	COG1862	Preprotein translocase
RIMD111065_26600	COG0343	queuine tRNA-ribosyltransferase activity
RIMD111065_26610	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
RIMD111065_26620	COG0517	IMP dehydrogenase activity
RIMD111065_26640	COG3634	alkyl hydroperoxide reductase activity
RIMD111065_26680	COG1393	Belongs to the ArsC family
RIMD111065_26690	COG0798	PFAM Bile acid sodium symporter
RIMD111065_26700	COG0640	Transcriptional regulator
RIMD111065_26730	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
RIMD111065_26730	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
RIMD111065_26740	COG0509	glycine decarboxylation via glycine cleavage system
RIMD111065_26750	COG0404	The glycine cleavage system catalyzes the degradation of glycine
RIMD111065_26760	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
RIMD111065_26770	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
RIMD111065_26800	COG2814	Major facilitator Superfamily
RIMD111065_26820	COG0625	glutathione transferase activity
RIMD111065_26840	COG0483	inositol monophosphate 1-phosphatase activity
RIMD111065_26880	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
RIMD111065_26910	COG1086	Polysaccharide biosynthesis protein
RIMD111065_26950	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
RIMD111065_26980	COG2089	acid synthase
RIMD111065_27100	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
RIMD111065_27130	COG0301	tRNA thio-modification
RIMD111065_27130	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
RIMD111065_27150	COG4953	penicillin-binding protein 1C
RIMD111065_27160	COG2373	Large extracellular alpha-helical protein
RIMD111065_27170	COG0446	pyridine nucleotide-disulphide oxidoreductase
RIMD111065_27190	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RIMD111065_27230	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_27250	COG2431	L-lysine efflux transmembrane transporter activity
RIMD111065_27260	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
RIMD111065_27270	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
RIMD111065_27300	COG1393	Belongs to the ArsC family
RIMD111065_27320	COG4783	chaperone-mediated protein folding
RIMD111065_27330	COG0425	Belongs to the sulfur carrier protein TusA family
RIMD111065_27370	COG3842	ATPase activity
RIMD111065_27380	COG3833	ABC-type maltose transport systems, permease component
RIMD111065_27390	COG1175	transmembrane transport
RIMD111065_27410	COG3081	Nucleoid-associated protein
RIMD111065_27420	COG3082	Protein of unknown function (DUF1414)
RIMD111065_27430	COG3083	sulfuric ester hydrolase activity
RIMD111065_27440	COG4771	TonB-dependent receptor
RIMD111065_27450	COG1770	oligopeptidase
RIMD111065_27490	COG4574	serine-type endopeptidase inhibitor activity
RIMD111065_27500	COG3085	chromosome segregation
RIMD111065_27510	COG0583	DNA-binding transcription factor activity
RIMD111065_27520	COG1605	Chorismate mutase
RIMD111065_27520	COG0287	Prephenate dehydrogenase
RIMD111065_27530	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
RIMD111065_27540	COG0584	glycerophosphoryl diester phosphodiesterase
RIMD111065_27570	COG1349	DNA-binding transcription factor activity
RIMD111065_27580	COG2271	Major facilitator Superfamily
RIMD111065_27590	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RIMD111065_27600	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
RIMD111065_27610	COG0583	DNA-binding transcription factor activity
RIMD111065_27660	COG0656	L-ascorbic acid biosynthetic process
RIMD111065_27670	COG2814	Major facilitator Superfamily
RIMD111065_27680	COG1294	oxidase, subunit
RIMD111065_27690	COG1271	oxidase subunit
RIMD111065_27700	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
RIMD111065_27710	COG2979	Protein of unknown function (DUF533)
RIMD111065_27770	COG2271	Major facilitator Superfamily
RIMD111065_27780	COG0583	DNA-binding transcription factor activity
RIMD111065_27800	COG2807	transmembrane transport
RIMD111065_27810	COG1187	pseudouridine synthase activity
RIMD111065_27840	COG0346	lactoylglutathione lyase activity
RIMD111065_27860	COG1403	HNH endonuclease
RIMD111065_27890	COG3681	Belongs to the UPF0597 family
RIMD111065_27910	COG0814	amino acid
RIMD111065_27950	COG1166	arginine decarboxylase activity
RIMD111065_27970	COG2195	Cleaves the N-terminal amino acid of tripeptides
RIMD111065_28030	COG0583	DNA-binding transcription factor activity
RIMD111065_28050	COG2759	Belongs to the formate--tetrahydrofolate ligase family
RIMD111065_28060	COG0840	transmembrane signaling receptor activity
RIMD111065_28070	COG0302	gtp cyclohydrolase
RIMD111065_28090	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
RIMD111065_28100	COG2267	carboxylic ester hydrolase activity
RIMD111065_28110	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
RIMD111065_28140	COG0314	molybdopterin synthase activity
RIMD111065_28150	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
RIMD111065_28160	COG0315	cyclic pyranopterin monophosphate synthase activity
RIMD111065_28170	COG0521	Mo-molybdopterin cofactor biosynthetic process
RIMD111065_28180	COG3005	denitrification pathway
RIMD111065_28200	COG0348	domain, Protein
RIMD111065_28210	COG0437	4 iron, 4 sulfur cluster binding
RIMD111065_28220	COG0243	molybdopterin cofactor binding
RIMD111065_28240	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_28240	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_28250	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
RIMD111065_28260	COG3850	Histidine kinase
RIMD111065_28270	COG2197	response regulator
RIMD111065_28330	COG0121	glutamine amidotransferase
RIMD111065_28340	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
RIMD111065_28350	COG1960	acyl-CoA dehydrogenase activity
RIMD111065_28360	COG3437	response regulator, receiver
RIMD111065_28360	COG0784	Response regulator, receiver
RIMD111065_28390	COG0328	RNA-DNA hybrid ribonuclease activity
RIMD111065_28400	COG2226	methyltransferase
RIMD111065_28410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
RIMD111065_28420	COG1388	LysM domain
RIMD111065_28420	COG0741	lytic transglycosylase activity
RIMD111065_28430	COG3021	interspecies interaction between organisms
RIMD111065_28450	COG1607	acyl-coa hydrolase
RIMD111065_28480	COG0741	lytic transglycosylase activity
RIMD111065_28500	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
RIMD111065_28520	COG2911	Protein conserved in bacteria
RIMD111065_28530	COG0729	surface antigen
RIMD111065_28550	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
RIMD111065_28560	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
RIMD111065_28580	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
RIMD111065_28600	COG4134	Bacterial extracellular solute-binding protein
RIMD111065_28620	COG4136	ATPase activity
RIMD111065_28630	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
RIMD111065_28640	COG2951	lytic endotransglycosylase activity
RIMD111065_28670	COG1846	Transcriptional regulator
RIMD111065_28690	COG0033	Phosphoglucomutase
RIMD111065_28700	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
RIMD111065_28710	COG0596	Alpha beta hydrolase
RIMD111065_28740	COG0716	FMN binding
RIMD111065_28760	COG0735	belongs to the Fur family
RIMD111065_28770	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
RIMD111065_28790	COG2190	(PTS) system
RIMD111065_28790	COG1263	PTS System
RIMD111065_28790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_28800	COG0363	glucosamine-6-phosphate deaminase activity
RIMD111065_28810	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
RIMD111065_28820	COG1846	Transcriptional regulator
RIMD111065_28820	COG1940	carbohydrate kinase activity
RIMD111065_28830	COG2194	sulfuric ester hydrolase activity
RIMD111065_28840	COG0217	transcriptional regulatory protein
RIMD111065_28850	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
RIMD111065_28860	COG1801	Protein of unknown function DUF72
RIMD111065_28870	COG4106	trans-aconitate 2-methyltransferase activity
RIMD111065_28880	COG0500	methyltransferase
RIMD111065_28920	COG0450	alkyl hydroperoxide reductase
RIMD111065_28930	COG0583	DNA-binding transcription factor activity
RIMD111065_28950	COG0791	NLP P60 protein
RIMD111065_28980	COG1309	transcriptional regulator
RIMD111065_29060	COG0534	Mate efflux family protein
RIMD111065_29100	COG0674	pyruvate-flavodoxin oxidoreductase activity
RIMD111065_29100	COG1013	pyruvate-flavodoxin oxidoreductase activity
RIMD111065_29100	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
RIMD111065_29100	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
RIMD111065_29120	COG3217	Mosc domain protein beta barrel domain protein
RIMD111065_29120	COG0633	Ferredoxin
RIMD111065_29120	COG3217	Mosc domain protein beta barrel domain protein
RIMD111065_29120	COG0633	Ferredoxin
RIMD111065_29140	COG0501	Belongs to the peptidase M48B family
RIMD111065_29150	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
RIMD111065_29160	COG1073	alpha beta
RIMD111065_29160	COG2226	methyltransferase
RIMD111065_29170	COG0156	8-amino-7-oxononanoate synthase activity
RIMD111065_29180	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
RIMD111065_29220	COG0017	Asparaginyl-tRNA synthetase
RIMD111065_29230	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
RIMD111065_29260	COG3069	C4-dicarboxylate transmembrane transporter activity
RIMD111065_29280	COG0583	DNA-binding transcription factor activity
RIMD111065_29290	COG1393	Belongs to the ArsC family
RIMD111065_29300	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
RIMD111065_29310	COG1876	peptidase activity
RIMD111065_29330	COG3263	regulation of cellular component size
RIMD111065_29370	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_29430	COG0564	pseudouridine synthase activity
RIMD111065_29450	COG1454	alcohol dehydrogenase
RIMD111065_29460	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
RIMD111065_29470	COG0702	epimerase
RIMD111065_29480	COG2914	Belongs to the UPF0125 (RnfH) family
RIMD111065_29490	COG2867	negative regulation of translational initiation
RIMD111065_29500	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
RIMD111065_29510	COG0582	viral genome integration into host DNA
RIMD111065_29670	COG1715	Restriction endonuclease
RIMD111065_29680	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
RIMD111065_29710	COG3171	Protein conserved in bacteria
RIMD111065_29730	COG0583	DNA-binding transcription factor activity
RIMD111065_29740	COG3048	D-serine ammonia-lyase activity
RIMD111065_29760	COG0538	isocitrate dehydrogenase activity
RIMD111065_29770	COG2207	Transcriptional regulator
RIMD111065_29810	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_29840	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
RIMD111065_29850	COG1263	PTS System
RIMD111065_29850	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_29860	COG1609	Transcriptional regulator
RIMD111065_29870	COG0446	pyridine nucleotide-disulphide oxidoreductase
RIMD111065_29870	COG1902	pentaerythritol trinitrate reductase activity
RIMD111065_29880	COG0789	Transcriptional regulator
RIMD111065_29900	COG0456	acetyltransferase
RIMD111065_29940	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_29940	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_29940	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_29960	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_29960	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
RIMD111065_29960	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_29980	COG1187	pseudouridine synthase activity
RIMD111065_30000	COG0482	sulfurtransferase activity
RIMD111065_30010	COG2915	High frequency lysogenization protein hflD homolog
RIMD111065_30020	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
RIMD111065_30030	COG2850	peptidyl-arginine hydroxylation
RIMD111065_30040	COG3153	acetyltransferase
RIMD111065_30060	COG0625	glutathione transferase activity
RIMD111065_30070	COG0259	pyridoxamine-phosphate oxidase activity
RIMD111065_30100	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RIMD111065_30100	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RIMD111065_30110	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
RIMD111065_30140	COG4235	cytochrome complex assembly
RIMD111065_30140	COG3088	subunit of a heme lyase
RIMD111065_30150	COG4235	cytochrome complex assembly
RIMD111065_30150	COG3088	subunit of a heme lyase
RIMD111065_30160	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
RIMD111065_30170	COG1138	Cytochrome C-type biogenesis protein
RIMD111065_30180	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
RIMD111065_30190	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
RIMD111065_30200	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
RIMD111065_30210	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
RIMD111065_30240	COG0835	chemotaxis
RIMD111065_30260	COG1192	Involved in chromosome partitioning
RIMD111065_30270	COG1360	Flagellar Motor Protein
RIMD111065_30280	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
RIMD111065_30290	COG2201	protein-glutamate methylesterase activity
RIMD111065_30300	COG0784	Response regulator, receiver
RIMD111065_30300	COG2198	Histidine kinase
RIMD111065_30300	COG0643	Histidine kinase
RIMD111065_30310	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
RIMD111065_30360	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
RIMD111065_30380	COG1684	flagellar biosynthetic protein fliR
RIMD111065_30490	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
RIMD111065_30510	COG1677	Flagellar hook-basal body complex protein FliE
RIMD111065_30540	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
RIMD111065_30560	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
RIMD111065_30560	COG1073	alpha beta
RIMD111065_30560	COG3064	Membrane
RIMD111065_30570	COG2994	toxin metabolic process
RIMD111065_30590	COG2274	protein secretion by the type I secretion system
RIMD111065_30610	COG2274	protein secretion by the type I secretion system
RIMD111065_30650	COG1737	Transcriptional regulator
RIMD111065_30660	COG0469	pyruvate kinase activity
RIMD111065_30690	COG1960	acyl-CoA dehydrogenase activity
RIMD111065_30710	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
RIMD111065_30720	COG0243	molybdopterin cofactor binding
RIMD111065_30730	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
RIMD111065_30740	COG0583	DNA-binding transcription factor activity
RIMD111065_30810	COG1454	alcohol dehydrogenase
RIMD111065_30810	COG1012	belongs to the aldehyde dehydrogenase family
RIMD111065_30840	COG1882	Formate acetyltransferase
RIMD111065_30860	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RIMD111065_30880	COG4869	propanediol catabolic process
RIMD111065_30960	COG4409	exo-alpha-(2->6)-sialidase activity
RIMD111065_30970	COG2731	YhcH YjgK YiaL family protein
RIMD111065_30980	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
RIMD111065_31000	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
RIMD111065_31010	COG1737	Transcriptional regulator
RIMD111065_31020	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
RIMD111065_31030	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
RIMD111065_31040	COG1349	DNA-binding transcription factor activity
RIMD111065_31050	COG0738	Major facilitator superfamily
RIMD111065_31070	COG1070	Carbohydrate kinase
RIMD111065_31110	COG4172	Belongs to the ABC transporter superfamily
RIMD111065_31120	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
RIMD111065_31140	COG0747	negative chemotaxis
RIMD111065_31150	COG1388	LysM domain
RIMD111065_31150	COG1376	ErfK ybiS ycfS ynhG family protein
RIMD111065_31180	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
RIMD111065_31190	COG0791	NLP P60 protein
RIMD111065_31200	COG2091	lysine biosynthetic process via aminoadipic acid
RIMD111065_31210	COG3118	belongs to the thioredoxin family
RIMD111065_31230	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
RIMD111065_31240	COG0788	formyltetrahydrofolate deformylase activity
RIMD111065_31260	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
RIMD111065_31300	COG0366	Alpha amylase catalytic
RIMD111065_31310	COG1196	nuclear chromosome segregation
RIMD111065_31310	COG0739	heme binding
RIMD111065_31310	COG0741	lytic transglycosylase activity
RIMD111065_31320	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
RIMD111065_31330	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
RIMD111065_31340	COG0673	inositol 2-dehydrogenase activity
RIMD111065_31420	COG1032	radical SAM domain protein
RIMD111065_31440	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
RIMD111065_31450	COG1566	PFAM secretion protein HlyD family protein
RIMD111065_31470	COG1752	Esterase of the alpha-beta hydrolase superfamily
RIMD111065_31480	COG0733	neurotransmitter:sodium symporter activity
RIMD111065_31550	COG0281	malic enzyme
RIMD111065_31570	COG0534	Mate efflux family protein
RIMD111065_31600	COG2233	PERMEase
RIMD111065_31610	COG0095	Lipoate-protein ligase
RIMD111065_31620	COG1115	amino acid carrier protein
RIMD111065_31630	COG0019	diaminopimelate decarboxylase activity
RIMD111065_31650	COG0678	peroxiredoxin activity
RIMD111065_31670	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
RIMD111065_31710	COG1131	(ABC) transporter
RIMD111065_31720	COG0545	Peptidyl-prolyl cis-trans isomerase
RIMD111065_31730	COG3142	Participates in the control of copper homeostasis
RIMD111065_31780	COG5002	protein histidine kinase activity
RIMD111065_31790	COG0745	RESPONSE REGULATOR receiver
RIMD111065_31800	COG0346	lactoylglutathione lyase activity
RIMD111065_31810	COG1804	L-carnitine dehydratase bile acid-inducible protein F
RIMD111065_31820	COG1960	acyl-CoA dehydrogenase activity
RIMD111065_31830	COG3284	Transcriptional regulator
RIMD111065_31860	COG0697	spore germination
RIMD111065_31870	COG4565	transcriptional regulatory protein
RIMD111065_31880	COG3290	protein histidine kinase activity
RIMD111065_31890	COG0281	malic enzyme
RIMD111065_31910	COG1846	Transcriptional regulator
RIMD111065_31920	COG1566	PFAM secretion protein HlyD family protein
RIMD111065_31980	COG0602	queuosine metabolic process
RIMD111065_31990	COG1328	CTP reductase activity
RIMD111065_32010	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
RIMD111065_32020	COG3115	cell septum assembly
RIMD111065_32030	COG1196	nuclear chromosome segregation
RIMD111065_32050	COG2860	membrane
RIMD111065_32070	COG3108	Peptidase M15
RIMD111065_32080	COG2989	Protein conserved in bacteria
RIMD111065_32110	COG0463	Glycosyl transferase, family 2
RIMD111065_32140	COG0366	Alpha amylase catalytic
RIMD111065_32210	COG3706	GGDEF domain
RIMD111065_32220	COG0037	tRNA processing
RIMD111065_32230	COG3590	peptidase
RIMD111065_32250	COG0488	(ABC) transporter
RIMD111065_32270	COG0531	amino acid
RIMD111065_32290	COG1073	alpha beta
RIMD111065_32300	COG1073	alpha beta
RIMD111065_32330	COG0814	amino acid
RIMD111065_32360	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
RIMD111065_32370	COG1982	Orn Lys Arg decarboxylase major
RIMD111065_32380	COG0531	amino acid
RIMD111065_32390	COG3710	Transcriptional regulator
RIMD111065_32400	COG0825	malonyl-CoA metabolic process
RIMD111065_32420	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
RIMD111065_32430	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
RIMD111065_32440	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
RIMD111065_32450	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
RIMD111065_32460	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
RIMD111065_32490	COG0750	zinc metalloprotease
RIMD111065_32500	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
RIMD111065_32510	COG0575	Belongs to the CDS family
RIMD111065_32520	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
RIMD111065_32530	COG0233	cytoplasmic translational termination
RIMD111065_32540	COG0528	UMP kinase activity
RIMD111065_32550	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
RIMD111065_32560	COG0052	Belongs to the universal ribosomal protein uS2 family
RIMD111065_32570	COG0024	Methionine aminopeptidase
RIMD111065_32580	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
RIMD111065_32590	COG2171	N-acyltransferase activity
RIMD111065_32610	COG1263	PTS System
RIMD111065_32610	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_32630	COG4580	involved in the transport of maltose and maltodextrins
RIMD111065_32650	COG0564	pseudouridine synthase activity
RIMD111065_32660	COG3098	single-species biofilm formation
RIMD111065_32710	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
RIMD111065_32730	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
RIMD111065_32730	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
RIMD111065_32760	COG1611	Belongs to the LOG family
RIMD111065_32770	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RIMD111065_32780	COG0473	3-isopropylmalate dehydrogenase activity
RIMD111065_32800	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
RIMD111065_32810	COG2363	Small membrane protein
RIMD111065_32830	COG0583	DNA-binding transcription factor activity
RIMD111065_32840	COG0840	transmembrane signaling receptor activity
RIMD111065_32850	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
RIMD111065_32880	COG1477	protein flavinylation
RIMD111065_32890	COG2871	sodium ion transport
RIMD111065_32900	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
RIMD111065_32910	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
RIMD111065_32920	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
RIMD111065_32930	COG1805	sodium ion transport
RIMD111065_32940	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
RIMD111065_32950	COG0271	Belongs to the BolA IbaG family
RIMD111065_32960	COG2813	Specifically methylates the guanine in position
RIMD111065_32980	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
RIMD111065_33000	COG2211	Major facilitator Superfamily
RIMD111065_33020	COG1666	GTP binding
RIMD111065_33030	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
RIMD111065_33040	COG0693	protein deglycase activity
RIMD111065_33170	COG2771	luxR family
RIMD111065_33180	COG0582	viral genome integration into host DNA
RIMD111065_33280	COG3328	transposase activity
RIMD111065_33380	COG2200	EAL domain
RIMD111065_33450	COG4983	Phage plasmid primase, P4 family domain protein
RIMD111065_33490	COG5377	YqaJ viral recombinase family
RIMD111065_33590	COG2003	Belongs to the UPF0758 family
RIMD111065_33680	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
RIMD111065_33680	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
RIMD111065_33690	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
RIMD111065_33710	COG1151	hydroxylamine reductase activity
RIMD111065_33720	COG0783	Belongs to the Dps family
RIMD111065_33770	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
RIMD111065_33800	COG4221	oxidoreductase activity
RIMD111065_33820	COG0415	Belongs to the DNA photolyase family
RIMD111065_33830	COG0789	Transcriptional regulator
RIMD111065_33840	COG3272	Protein of unknown function (DUF1722)
RIMD111065_33900	COG0077	Prephenate dehydratase
RIMD111065_33900	COG1605	Chorismate mutase
RIMD111065_33940	COG1349	DNA-binding transcription factor activity
RIMD111065_33950	COG2084	Dehydrogenase
RIMD111065_33970	COG0235	Class ii aldolase
RIMD111065_33980	COG3622	Belongs to the hyi family
RIMD111065_33990	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
RIMD111065_34000	COG2610	gluconate transmembrane transporter activity
RIMD111065_34020	COG0840	transmembrane signaling receptor activity
RIMD111065_34040	COG0300	oxidoreductase activity
RIMD111065_34090	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
RIMD111065_34120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
RIMD111065_34140	COG0826	peptidase U32
RIMD111065_34150	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_34170	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
RIMD111065_34180	COG0840	transmembrane signaling receptor activity
RIMD111065_34210	COG2198	Histidine kinase
RIMD111065_34210	COG0643	Histidine kinase
RIMD111065_34230	COG0835	chemotaxis
RIMD111065_34240	COG0840	transmembrane signaling receptor activity
RIMD111065_34260	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
RIMD111065_34270	COG2201	protein-glutamate methylesterase activity
RIMD111065_34280	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
RIMD111065_34310	COG2197	response regulator
RIMD111065_34360	COG2200	EAL domain
RIMD111065_34360	COG2203	Gaf domain
RIMD111065_34360	COG2199	diguanylate cyclase activity
RIMD111065_34370	COG0826	peptidase U32
RIMD111065_34380	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
RIMD111065_34390	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
RIMD111065_34400	COG0305	Participates in initiation and elongation during chromosome replication
RIMD111065_34420	COG2200	EAL domain
RIMD111065_34430	COG0737	Belongs to the 5'-nucleotidase family
RIMD111065_34470	COG2204	response regulator
RIMD111065_34480	COG0545	Peptidyl-prolyl cis-trans isomerase
RIMD111065_34510	COG1047	Peptidyl-prolyl cis-trans
RIMD111065_34520	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
RIMD111065_34540	COG0835	chemotaxis
RIMD111065_34540	COG0784	Response regulator, receiver
RIMD111065_34550	COG0429	hydrolase of the alpha beta-hydrolase fold
RIMD111065_34560	COG2203	Gaf domain
RIMD111065_34560	COG4251	negative regulation of phosphorylation
RIMD111065_34560	COG3706	GGDEF domain
RIMD111065_34560	COG5001	Diguanylate cyclase
RIMD111065_34570	COG3089	Belongs to the UPF0270 family
RIMD111065_34590	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
RIMD111065_34600	COG0463	Glycosyl transferase, family 2
RIMD111065_34610	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
RIMD111065_34610	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
RIMD111065_34620	COG0726	polysaccharide deacetylase
RIMD111065_34630	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
RIMD111065_34640	COG2076	Multidrug Resistance protein
RIMD111065_34650	COG2076	Multidrug Resistance protein
RIMD111065_34660	COG3954	Phosphoribulokinase
RIMD111065_34690	COG1765	OsmC-like protein
RIMD111065_34710	COG2226	methyltransferase
RIMD111065_34720	COG3397	chitin binding
RIMD111065_34750	COG2202	Pas domain
RIMD111065_34750	COG2205	protein histidine kinase activity
RIMD111065_34770	COG3655	Transcriptional regulator
RIMD111065_34780	COG2814	Major facilitator Superfamily
RIMD111065_34790	COG4771	TonB-dependent receptor
RIMD111065_34830	COG0748	coenzyme F420 binding
RIMD111065_34840	COG3721	Heme iron utilization protein
RIMD111065_34860	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
RIMD111065_34910	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
RIMD111065_34920	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RIMD111065_34930	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
RIMD111065_34980	COG0741	lytic transglycosylase activity
RIMD111065_34990	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
RIMD111065_35020	COG0488	(ABC) transporter
RIMD111065_35050	COG2252	PERMEase
RIMD111065_35060	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
RIMD111065_35070	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
RIMD111065_35080	COG3178	'Phosphotransferase
RIMD111065_35090	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
RIMD111065_35110	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
RIMD111065_35120	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
RIMD111065_35130	COG2967	ApaG domain
RIMD111065_35140	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
RIMD111065_35160	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
RIMD111065_35170	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
RIMD111065_35200	COG0318	PFAM AMP-dependent synthetase and ligase
RIMD111065_35210	COG3314	Sporulation integral membrane protein YlbJ
RIMD111065_35220	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
RIMD111065_35230	COG0211	Belongs to the bacterial ribosomal protein bL27 family
RIMD111065_35240	COG0261	This protein binds to 23S rRNA in the presence of protein L20
RIMD111065_35250	COG0142	geranyltranstransferase activity
RIMD111065_35260	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
RIMD111065_35270	COG0330	HflC and HflK could
RIMD111065_35280	COG0330	HflC and HflK could
RIMD111065_35290	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
RIMD111065_35300	COG1923	regulation of RNA biosynthetic process
RIMD111065_35310	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
RIMD111065_35320	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
RIMD111065_35340	COG0802	atpase or kinase
RIMD111065_35350	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
RIMD111065_35350	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
RIMD111065_35360	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
RIMD111065_35390	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
RIMD111065_35400	COG2011	ABC-type metal ion transport system permease component
RIMD111065_35410	COG1464	Belongs to the NlpA lipoprotein family
RIMD111065_35430	COG0840	transmembrane signaling receptor activity
RIMD111065_35480	COG0784	Response regulator, receiver
RIMD111065_35480	COG2198	Histidine kinase
RIMD111065_35480	COG5002	protein histidine kinase activity
RIMD111065_35520	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
RIMD111065_35550	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
RIMD111065_35560	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
RIMD111065_35580	COG2716	regulation of RNA biosynthetic process
RIMD111065_35590	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
RIMD111065_35600	COG3013	Belongs to the UPF0304 family
RIMD111065_35620	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
RIMD111065_35630	COG0280	phosphate acetyltransferase
RIMD111065_35630	COG0857	belongs to the CobB CobQ family
RIMD111065_35650	COG0028	Belongs to the TPP enzyme family
RIMD111065_35670	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
RIMD111065_35680	COG0671	phosphoesterase, PA-phosphatase related
RIMD111065_35700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
RIMD111065_35710	COG0473	3-isopropylmalate dehydrogenase activity
RIMD111065_35720	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
RIMD111065_35730	COG0066	3-isopropylmalate dehydratase activity
RIMD111065_35760	COG4143	(ABC) transporter
RIMD111065_35770	COG1178	ABC-type Fe3 transport system permease component
RIMD111065_35780	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
RIMD111065_35790	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
RIMD111065_35810	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
RIMD111065_35830	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
RIMD111065_35840	COG0564	pseudouridine synthase activity
RIMD111065_35860	COG3300	MHYT domain
RIMD111065_35860	COG5001	Diguanylate cyclase
RIMD111065_35880	COG0459	protein refolding
RIMD111065_35890	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
RIMD111065_35900	COG0534	Mate efflux family protein
RIMD111065_35910	COG3030	protein affecting phage T7 exclusion by the F plasmid
RIMD111065_35920	COG1027	Aspartate ammonia-lyase
RIMD111065_35930	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
RIMD111065_35960	COG0477	Major facilitator Superfamily
RIMD111065_35980	COG3227	Zinc metalloprotease (Elastase)
RIMD111065_35990	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RIMD111065_36000	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RIMD111065_36020	COG0673	inositol 2-dehydrogenase activity
RIMD111065_36040	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
RIMD111065_36050	COG0635	Involved in the biosynthesis of porphyrin-containing compound
RIMD111065_36060	COG3036	rescue of stalled ribosome
RIMD111065_36090	COG0138	bifunctional purine biosynthesis protein purh
RIMD111065_36100	COG0151	Belongs to the GarS family
RIMD111065_36140	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
RIMD111065_36150	COG0358	DNA primase activity
RIMD111065_36160	COG1610	YqeY-like protein
RIMD111065_36170	COG0828	Belongs to the bacterial ribosomal protein bS21 family
RIMD111065_36180	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
RIMD111065_36200	COG1388	LysM domain
RIMD111065_36200	COG4942	peptidase
RIMD111065_36210	COG1238	metal cluster binding
RIMD111065_36220	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
RIMD111065_36230	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
RIMD111065_36240	COG0585	pseudouridine synthase activity
RIMD111065_36260	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
RIMD111065_36270	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
RIMD111065_36280	COG0148	phosphopyruvate hydratase activity
RIMD111065_36290	COG0504	CTP synthase activity
RIMD111065_36300	COG3956	TIGRFAM MazG family protein
RIMD111065_36310	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
RIMD111065_36320	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
RIMD111065_36340	COG4807	Protein conserved in bacteria
RIMD111065_36350	COG3023	N-Acetylmuramoyl-L-alanine amidase
RIMD111065_36370	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
RIMD111065_36380	COG1381	Involved in DNA repair and RecF pathway recombination
RIMD111065_36400	COG0571	ribonuclease III activity
RIMD111065_36410	COG0681	Belongs to the peptidase S26 family
RIMD111065_36420	COG0481	GTPase activity
RIMD111065_36450	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
RIMD111065_36460	COG1595	DNA-templated transcription, initiation
RIMD111065_36470	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
RIMD111065_36490	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
RIMD111065_36550	COG4232	protein-disulfide reductase activity
RIMD111065_36570	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
RIMD111065_36590	COG0126	phosphoglycerate kinase activity
RIMD111065_36600	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
RIMD111065_36610	COG1940	carbohydrate kinase activity
RIMD111065_36620	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
RIMD111065_36650	COG4991	sh3 domain protein
RIMD111065_36660	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
RIMD111065_36690	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
RIMD111065_36740	COG1505	serine-type exopeptidase activity
RIMD111065_36750	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
RIMD111065_36760	COG0765	amino acid transport
RIMD111065_36770	COG0765	amino acid transport
RIMD111065_36780	COG1126	abc transporter atp-binding protein
RIMD111065_36790	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_36800	COG1136	(ABC) transporter
RIMD111065_36800	COG0577	efflux transmembrane transporter activity
RIMD111065_36810	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
RIMD111065_36820	COG0745	RESPONSE REGULATOR receiver
RIMD111065_36830	COG2205	protein histidine kinase activity
RIMD111065_36840	COG2816	NAD+ diphosphatase activity
RIMD111065_36850	COG2070	2-Nitropropane dioxygenase
RIMD111065_36910	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
RIMD111065_36960	COG0513	Belongs to the DEAD box helicase family
RIMD111065_37000	COG0154	amidase activity
RIMD111065_37010	COG2957	Belongs to the agmatine deiminase family
RIMD111065_37040	COG1902	pentaerythritol trinitrate reductase activity
RIMD111065_37110	COG3300	MHYT domain
RIMD111065_37110	COG5001	Diguanylate cyclase
RIMD111065_37130	COG0714	Associated with various cellular activities
RIMD111065_37150	COG0456	acetyltransferase
RIMD111065_37170	COG1022	Amp-dependent synthetase and ligase
RIMD111065_37190	COG2918	glutathione biosynthetic process
RIMD111065_37200	COG0612	Peptidase, M16
RIMD111065_37210	COG1238	metal cluster binding
RIMD111065_37260	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
RIMD111065_37270	COG0359	binds to the 23S rRNA
RIMD111065_37280	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
RIMD111065_37290	COG0360	Binds together with S18 to 16S ribosomal RNA
RIMD111065_37300	COG1914	H( )-stimulated, divalent metal cation uptake system
RIMD111065_37350	COG2153	protein acetylation
RIMD111065_37380	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
RIMD111065_37390	COG0557	exoribonuclease II activity
RIMD111065_37400	COG3706	GGDEF domain
RIMD111065_37410	COG1854	S-ribosylhomocysteine lyase activity
RIMD111065_37440	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
RIMD111065_37440	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
RIMD111065_37560	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
RIMD111065_37570	COG1047	Peptidyl-prolyl cis-trans
RIMD111065_37580	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
RIMD111065_37590	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
RIMD111065_37600	COG0196	riboflavin kinase activity
RIMD111065_37610	COG0728	peptidoglycan biosynthetic process
RIMD111065_37620	COG0268	Binds directly to 16S ribosomal RNA
RIMD111065_37630	COG0640	Transcriptional regulator
RIMD111065_37640	COG0583	DNA-binding transcription factor activity
RIMD111065_37660	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
RIMD111065_37670	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
RIMD111065_37680	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
RIMD111065_37700	COG1051	belongs to the nudix hydrolase family
RIMD111065_37710	COG3066	DNA modification
RIMD111065_37730	COG0335	large ribosomal subunit rRNA binding
RIMD111065_37740	COG0336	Belongs to the RNA methyltransferase TrmD family
RIMD111065_37750	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
RIMD111065_37760	COG0228	four-way junction DNA binding
RIMD111065_37770	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
RIMD111065_37780	COG4137	Cytochrome C assembly protein
RIMD111065_37790	COG4536	flavin adenine dinucleotide binding
RIMD111065_37810	COG1017	nitric oxide dioxygenase activity
RIMD111065_37810	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
RIMD111065_37820	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
RIMD111065_37840	COG0039	L-malate dehydrogenase activity
RIMD111065_37850	COG4160	amino acid transport
RIMD111065_37860	COG4215	(ABC) transporter
RIMD111065_37870	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
RIMD111065_37880	COG1126	abc transporter atp-binding protein
RIMD111065_37890	COG1438	arginine binding
RIMD111065_37900	COG2837	iron assimilation
RIMD111065_37910	COG3842	ATPase activity
RIMD111065_37930	COG1840	ABC-type Fe3 transport system, periplasmic component
RIMD111065_37940	COG0347	Belongs to the P(II) protein family
RIMD111065_37970	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RIMD111065_37980	COG0583	DNA-binding transcription factor activity
RIMD111065_38010	COG1929	Belongs to the glycerate kinase type-1 family
RIMD111065_38020	COG2610	gluconate transmembrane transporter activity
RIMD111065_38030	COG3835	regulator
RIMD111065_38040	COG3112	Uncharacterised protein family (UPF0231)
RIMD111065_38070	COG0840	transmembrane signaling receptor activity
RIMD111065_38110	COG0513	Belongs to the DEAD box helicase family
RIMD111065_38200	COG1448	Aminotransferase
RIMD111065_38230	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
RIMD111065_38240	COG1328	CTP reductase activity
RIMD111065_38280	COG0793	Belongs to the peptidase S41A family
RIMD111065_38280	COG4946	Tricorn protease homolog
RIMD111065_38360	COG0840	transmembrane signaling receptor activity
RIMD111065_38370	COG3397	chitin binding
RIMD111065_38380	COG0583	DNA-binding transcription factor activity
RIMD111065_38390	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
RIMD111065_38400	COG4208	sulfate ABC transporter
RIMD111065_38410	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
RIMD111065_38430	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
RIMD111065_38440	COG3174	membrane
RIMD111065_38450	COG0110	maltose O-acetyltransferase activity
RIMD111065_38500	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
RIMD111065_38520	COG0165	Argininosuccinate lyase
RIMD111065_38530	COG0137	argininosuccinate synthase activity
RIMD111065_38550	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
RIMD111065_38560	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
RIMD111065_38580	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
RIMD111065_38600	COG0527	aspartate kinase activity
RIMD111065_38600	COG0460	homoserine dehydrogenase
RIMD111065_38610	COG0626	cystathionine gamma-synthase activity
RIMD111065_38640	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RIMD111065_38650	COG0814	amino acid
RIMD111065_38660	COG1218	3'(2'),5'-bisphosphate nucleotidase
RIMD111065_38670	COG0494	nUDIX hydrolase
RIMD111065_38680	COG1011	Hydrolase
RIMD111065_38690	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
RIMD111065_38720	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
RIMD111065_38740	COG3156	type II secretion system protein K
RIMD111065_38750	COG4795	General secretion pathway protein
RIMD111065_38760	COG2165	general secretion pathway protein
RIMD111065_38780	COG2165	general secretion pathway protein
RIMD111065_38790	COG1459	type II secretion system
RIMD111065_38800	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
RIMD111065_38820	COG3031	protein transport across the cell outer membrane
RIMD111065_38840	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
RIMD111065_38850	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
RIMD111065_38890	COG0456	acetyltransferase
RIMD111065_38900	COG3133	Outer membrane lipoprotein
RIMD111065_38930	COG2771	luxR family
RIMD111065_38940	COG3916	Acyl-homoserine-lactone synthase
RIMD111065_38960	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
RIMD111065_38970	COG1309	transcriptional regulator
RIMD111065_38990	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
RIMD111065_38990	COG2213	PTS system mannitol-specific
RIMD111065_39000	COG0246	Mannitol dehydrogenase
RIMD111065_39010	COG3722	fumarate hydratase activity
RIMD111065_39020	COG3263	regulation of cellular component size
RIMD111065_39070	COG1671	Belongs to the UPF0178 family
RIMD111065_39100	COG1988	membrane-bound metal-dependent
RIMD111065_39110	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
RIMD111065_39120	COG0513	Belongs to the DEAD box helicase family
RIMD111065_39170	COG1575	Belongs to the MenA family. Type 1 subfamily
RIMD111065_39180	COG1169	isochorismate synthase
RIMD111065_39190	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
RIMD111065_39200	COG0596	Alpha beta hydrolase
RIMD111065_39210	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
RIMD111065_39220	COG1441	menaquinone biosynthetic process
RIMD111065_39230	COG0318	PFAM AMP-dependent synthetase and ligase
RIMD111065_39260	COG3539	Fimbrial protein
RIMD111065_39270	COG3121	Chaperone
RIMD111065_39280	COG3188	usher protein
RIMD111065_39300	COG3539	Fimbrial protein
RIMD111065_39320	COG3291	Pkd domain containing protein
RIMD111065_39330	COG2949	membrane
RIMD111065_39340	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
RIMD111065_39360	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
RIMD111065_39370	COG5380	lipid catabolic process
RIMD111065_39400	COG4533	DNA binding
RIMD111065_39420	COG2873	o-acetylhomoserine
RIMD111065_39440	COG1979	alcohol dehydrogenase
RIMD111065_39480	COG4221	oxidoreductase activity
RIMD111065_39520	COG1285	pathogenesis
RIMD111065_39560	COG1368	sulfuric ester hydrolase activity
RIMD111065_39570	COG1522	sequence-specific DNA binding
RIMD111065_39590	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
RIMD111065_39600	COG1418	mRNA catabolic process
RIMD111065_39610	COG1058	Belongs to the CinA family
RIMD111065_39610	COG1546	Belongs to the CinA family
RIMD111065_39630	COG0842	Transport permease protein
RIMD111065_39630	COG1129	ABC transporter
RIMD111065_39660	COG0561	phosphatase activity
RIMD111065_39670	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
RIMD111065_39710	COG1011	Hydrolase
RIMD111065_39740	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
RIMD111065_39750	COG0019	diaminopimelate decarboxylase activity
RIMD111065_39760	COG1965	Belongs to the frataxin family
RIMD111065_39770	COG0400	carboxylic ester hydrolase activity
RIMD111065_39780	COG3072	Adenylate cyclase
RIMD111065_39790	COG0181	hydroxymethylbilane synthase activity
RIMD111065_39810	COG2959	enzyme of heme biosynthesis
RIMD111065_39840	COG1494	fructose-1,6-bisphosphatase
RIMD111065_39920	COG1733	regulation of RNA biosynthetic process
RIMD111065_39960	COG3932	Exopolysaccharide synthesis, ExoD
RIMD111065_39970	COG0814	amino acid
RIMD111065_39980	COG3706	GGDEF domain
RIMD111065_40010	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
RIMD111065_40060	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
RIMD111065_40070	COG2022	thiamine diphosphate biosynthetic process
RIMD111065_40090	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
RIMD111065_40100	COG0352	thiamine-phosphate diphosphorylase activity
RIMD111065_40110	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
RIMD111065_40150	COG0745	RESPONSE REGULATOR receiver
RIMD111065_40160	COG0642	Histidine kinase
RIMD111065_40180	COG0189	ligase activity
RIMD111065_40230	COG1639	'signal transduction protein
RIMD111065_40250	COG2321	neutral zinc metallopeptidase
RIMD111065_40260	COG3700	Belongs to the class B bacterial acid phosphatase family
RIMD111065_40310	COG2172	sigma factor antagonist activity
RIMD111065_40320	COG5002	protein histidine kinase activity
RIMD111065_40320	COG2205	protein histidine kinase activity
RIMD111065_40320	COG0784	Response regulator, receiver
RIMD111065_40330	COG3437	response regulator, receiver
RIMD111065_40350	COG0477	Major facilitator Superfamily
RIMD111065_40380	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
RIMD111065_40390	COG1263	PTS System
RIMD111065_40390	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
RIMD111065_40430	COG0312	modulator of DNA gyrase
RIMD111065_40440	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
RIMD111065_40460	COG3164	Protein of unknown function
RIMD111065_40470	COG1530	ribonuclease E activity
RIMD111065_40480	COG0424	maF-like protein
RIMD111065_40490	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
RIMD111065_40500	COG1792	Involved in formation and maintenance of cell shape
RIMD111065_40510	COG1077	Cell shape determining protein MreB Mrl
RIMD111065_40560	COG4968	Prepilin-type N-terminal cleavage methylation domain
RIMD111065_40580	COG2165	general secretion pathway protein
RIMD111065_40600	COG1459	type II secretion system
RIMD111065_40610	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
RIMD111065_40700	COG2199	diguanylate cyclase activity
RIMD111065_40700	COG2200	EAL domain
RIMD111065_40710	COG2200	EAL domain
RIMD111065_40720	COG0387	Pfam Sodium calcium exchanger
RIMD111065_40730	COG2986	histidine ammonia-lyase
RIMD111065_40740	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
RIMD111065_40750	COG0010	Belongs to the arginase family
RIMD111065_40760	COG1228	amidohydrolase
RIMD111065_40770	COG2188	Transcriptional regulator
RIMD111065_40780	COG0288	reversible hydration of carbon dioxide
RIMD111065_40800	COG2177	Part of the ABC transporter FtsEX involved in
RIMD111065_40810	COG2884	Cell division ATP-binding protein ftsE
RIMD111065_40820	COG0552	protein localization to endoplasmic reticulum
RIMD111065_40830	COG0742	ribosomal rna small subunit methyltransferase
RIMD111065_40890	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
RIMD111065_40910	COG0741	lytic transglycosylase activity
RIMD111065_40930	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
RIMD111065_40950	COG2095	MarC family integral membrane protein
RIMD111065_40970	COG1301	dicarboxylic acid transport
RIMD111065_41020	COG3714	YhhN family
RIMD111065_41070	COG1770	oligopeptidase
RIMD111065_41100	COG4221	oxidoreductase activity
RIMD111065_41110	COG0583	DNA-binding transcription factor activity
RIMD111065_41120	COG2249	NAD(P)H dehydrogenase (quinone) activity
RIMD111065_41160	COG0203	ribosomal protein L17
RIMD111065_41170	COG0202	RNA polymerase activity
RIMD111065_41180	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
RIMD111065_41190	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
RIMD111065_41200	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
RIMD111065_41210	COG0201	protein transport
RIMD111065_41220	COG0200	Binds to the 23S rRNA
RIMD111065_41230	COG1841	ribosomal large subunit assembly
RIMD111065_41240	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
RIMD111065_41250	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
RIMD111065_41260	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
RIMD111065_41270	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
RIMD111065_41280	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
RIMD111065_41290	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
RIMD111065_41300	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
RIMD111065_41310	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
RIMD111065_41320	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
RIMD111065_41330	COG0255	Belongs to the universal ribosomal protein uL29 family
RIMD111065_41340	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
RIMD111065_41350	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
RIMD111065_41360	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
RIMD111065_41370	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
RIMD111065_41380	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
RIMD111065_41390	COG0089	rRNA binding
RIMD111065_41400	COG0088	Forms part of the polypeptide exit tunnel
RIMD111065_41410	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
RIMD111065_41420	COG0051	transcription antitermination factor activity, RNA binding
RIMD111065_41460	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
RIMD111065_41470	COG2183	response to ionizing radiation
RIMD111065_41510	COG0596	Alpha beta hydrolase
RIMD111065_41520	COG1040	competence protein
RIMD111065_41530	COG0316	Belongs to the HesB IscA family
RIMD111065_41530	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
RIMD111065_41540	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
RIMD111065_41550	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
RIMD111065_41560	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
RIMD111065_41570	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
RIMD111065_41590	COG4942	peptidase
RIMD111065_41610	COG1609	Transcriptional regulator
RIMD111065_41620	COG0800	Aldolase
RIMD111065_41640	COG3265	gluconokinase activity
RIMD111065_41650	COG2610	gluconate transmembrane transporter activity
RIMD111065_41660	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
RIMD111065_41670	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
RIMD111065_41690	COG0456	acetyltransferase
RIMD111065_41710	COG1490	D-aminoacyl-tRNA deacylase activity
RIMD111065_41720	COG1295	ribonuclease BN
RIMD111065_41730	COG1217	gtp-binding protein TYPA
RIMD111065_41740	COG0174	glutamine synthetase
RIMD111065_41770	COG3852	Histidine kinase
RIMD111065_41780	COG2204	response regulator
RIMD111065_41790	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
RIMD111065_41800	COG0635	Involved in the biosynthesis of porphyrin-containing compound
RIMD111065_41820	COG3078	GTPase activator activity
RIMD111065_41840	COG0218	Necessary for normal cell division and for the maintenance of normal septation
RIMD111065_41860	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
RIMD111065_41870	COG0408	coproporphyrinogen oxidase activity
RIMD111065_41880	COG0009	L-threonylcarbamoyladenylate synthase
RIMD111065_41900	COG0551	DNA topoisomerase type I activity
RIMD111065_41910	COG2922	Belongs to the Smg family
RIMD111065_41920	COG0758	DNA mediated transformation
RIMD111065_41940	COG0242	peptide deformylase activity
RIMD111065_41950	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
RIMD111065_41960	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
RIMD111065_41960	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
RIMD111065_41970	COG0569	domain protein
RIMD111065_41980	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RIMD111065_41990	COG1322	Protein conserved in bacteria
RIMD111065_42030	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
RIMD111065_42040	COG0686	Belongs to the AlaDH PNT family
RIMD111065_42050	COG0519	Catalyzes the synthesis of GMP from XMP
RIMD111065_42050	COG0518	GMP synthase (glutamine-hydrolyzing) activity
RIMD111065_42070	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
RIMD111065_42080	COG1396	sequence-specific DNA binding
RIMD111065_42090	COG1012	belongs to the aldehyde dehydrogenase family
RIMD111065_42110	COG2962	Rard protein
RIMD111065_42130	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_42150	COG0840	transmembrane signaling receptor activity
RIMD111065_42160	COG2391	methyltransferase activity
RIMD111065_42170	COG1280	lysine exporter protein (LysE YggA)
RIMD111065_42300	COG0583	DNA-binding transcription factor activity
RIMD111065_42310	COG1943	Transposase
RIMD111065_42330	COG0210	DNA helicase
RIMD111065_42340	COG1744	ABC transporter substrate-binding protein PnrA-like
RIMD111065_42350	COG3845	ABC transporter
RIMD111065_42360	COG4603	Belongs to the binding-protein-dependent transport system permease family
RIMD111065_42370	COG1079	Belongs to the binding-protein-dependent transport system permease family
RIMD111065_42380	COG0583	DNA-binding transcription factor activity
RIMD111065_42420	COG1262	PFAM Formylglycine-generating sulfatase enzyme
RIMD111065_42430	COG0385	Bile acid
RIMD111065_42440	COG0531	amino acid
RIMD111065_42450	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
RIMD111065_42460	COG0531	amino acid
RIMD111065_42470	COG2731	YhcH YjgK YiaL family protein
RIMD111065_42480	COG3250	beta-galactosidase activity
RIMD111065_42490	COG1609	Transcriptional regulator
RIMD111065_42500	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
RIMD111065_42510	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RIMD111065_42510	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
RIMD111065_42520	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
RIMD111065_42530	COG3074	FtsZ-dependent cytokinesis
RIMD111065_42550	COG1045	serine acetyltransferase
RIMD111065_42570	COG0745	RESPONSE REGULATOR receiver
RIMD111065_42580	COG2205	protein histidine kinase activity
RIMD111065_42590	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
RIMD111065_42600	COG0534	Mate efflux family protein
RIMD111065_42640	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
RIMD111065_42650	COG2937	Belongs to the GPAT DAPAT family
RIMD111065_42660	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
RIMD111065_42670	COG3161	chorismate lyase activity
RIMD111065_42680	COG1580	Controls the rotational direction of flagella during chemotaxis
RIMD111065_42720	COG0604	alcohol dehydrogenase
RIMD111065_42730	COG1609	Transcriptional regulator
RIMD111065_42770	COG1519	Transferase
RIMD111065_42780	COG0859	PFAM glycosyl transferase family 9
RIMD111065_42790	COG0463	Glycosyl transferase, family 2
RIMD111065_42800	COG0859	PFAM glycosyl transferase family 9
RIMD111065_42810	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
RIMD111065_42820	COG2990	Protein conserved in bacteria
RIMD111065_42830	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
RIMD111065_42850	COG0267	Belongs to the bacterial ribosomal protein bL33 family
RIMD111065_42860	COG0227	Belongs to the bacterial ribosomal protein bL28 family
RIMD111065_42870	COG2003	Belongs to the UPF0758 family
RIMD111065_42880	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
RIMD111065_42890	COG0756	dUTP diphosphatase activity
RIMD111065_42900	COG1309	transcriptional regulator
RIMD111065_42910	COG0668	transmembrane transport
RIMD111065_42930	COG0166	Belongs to the GPI family
RIMD111065_42940	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
RIMD111065_42950	COG0583	DNA-binding transcription factor activity
RIMD111065_42980	COG1042	CoA-binding domain protein
RIMD111065_42980	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
RIMD111065_42980	COG0045	succinate-CoA ligase (ADP-forming) activity
RIMD111065_42990	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
RIMD111065_43000	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
RIMD111065_43010	COG1739	Uncharacterized protein family UPF0029
RIMD111065_43020	COG0006	proline dipeptidase activity
RIMD111065_43030	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
RIMD111065_43040	COG1024	Enoyl-CoA hydratase
RIMD111065_43040	COG1250	3-hydroxyacyl-CoA dehydrogenase
RIMD111065_43050	COG0183	Belongs to the thiolase family
RIMD111065_43100	COG0425	Belongs to the sulfur carrier protein TusA family
RIMD111065_43110	COG0251	oxidation-reduction process
RIMD111065_43120	COG2885	chlorophyll binding
RIMD111065_43140	COG2818	Glycosylase
RIMD111065_43150	COG0752	glycyl-tRNA synthetase alpha subunit
RIMD111065_43160	COG0751	glycine-tRNA ligase activity
RIMD111065_43190	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
RIMD111065_43230	COG0814	amino acid
RIMD111065_43240	COG0348	domain, Protein
RIMD111065_43260	COG0446	pyridine nucleotide-disulphide oxidoreductase
RIMD111065_43270	COG1773	rubredoxin
RIMD111065_43270	COG0426	domain, Protein
RIMD111065_43280	COG3604	Transcriptional regulator
RIMD111065_43290	COG2188	Transcriptional regulator
RIMD111065_43320	COG1609	Transcriptional regulator
RIMD111065_43400	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
RIMD111065_43450	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
RIMD111065_43480	COG3118	belongs to the thioredoxin family
RIMD111065_43490	COG0513	Belongs to the DEAD box helicase family
RIMD111065_43500	COG0248	Ppx GppA phosphatase
RIMD111065_43530	COG0742	ribosomal rna small subunit methyltransferase
RIMD111065_43570	COG0084	hydrolase, TatD family'
RIMD111065_43580	COG0805	protein transport
RIMD111065_43590	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
RIMD111065_43610	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
RIMD111065_43620	COG3165	ubiquinone biosynthetic process from chorismate
RIMD111065_43640	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
RIMD111065_43650	COG0402	S-adenosylhomocysteine deaminase activity
RIMD111065_43680	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
RIMD111065_43690	COG0848	biopolymer transport protein
RIMD111065_43700	COG0811	peptide transport
RIMD111065_43710	COG0811	peptide transport
RIMD111065_43730	COG2771	luxR family
RIMD111065_43740	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
RIMD111065_43750	COG1349	DNA-binding transcription factor activity
RIMD111065_43760	COG0745	RESPONSE REGULATOR receiver
RIMD111065_43770	COG2205	protein histidine kinase activity
RIMD111065_43790	COG4452	Inner membrane protein CreD
RIMD111065_43800	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
RIMD111065_43810	COG0355	proton-transporting ATP synthase activity, rotational mechanism
RIMD111065_43820	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
RIMD111065_43830	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
RIMD111065_43840	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
RIMD111065_43850	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
RIMD111065_43860	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
RIMD111065_43880	COG0356	it plays a direct role in the translocation of protons across the membrane
RIMD111065_43900	COG1475	DNA binding
RIMD111065_43910	COG1192	Involved in chromosome partitioning
RIMD111065_43920	COG0357	Ribosomal RNA small subunit methyltransferase G
RIMD111065_43930	COG0445	tRNA wobble uridine modification
RIMD111065_43940	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
RIMD111065_43950	COG4774	siderophore transport
RIMD111065_43960	COG4615	Cyclic peptide transporter
RIMD111065_43970	COG1120	ATPase activity
RIMD111065_44000	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
RIMD111065_44010	COG0706	membrane insertase activity
RIMD111065_44020	COG0594	ribonuclease P activity
RIMD111065_44030	COG0230	Belongs to the bacterial ribosomal protein bL34 family
RIMD111065_44040	COG1126	abc transporter atp-binding protein