locus-tag	class	description
C3B79_0001	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
C3B79_0002	COG2823	Periplasmic or secreted lipoprotein
C3B79_0003	COG2969	positive regulation of protein catabolic process
C3B79_0004	COG0625	glutathione transferase activity
C3B79_0005	COG2857	Cytochrome c1
C3B79_0006	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C3B79_0007	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C3B79_0008	COG0723	plastoquinol--plastocyanin reductase activity
C3B79_0010	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
C3B79_0011	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
C3B79_0013	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
C3B79_0015	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3B79_0016	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3B79_0022	COG3964	amidohydrolase
C3B79_0025	COG3711	transcriptional antiterminator
C3B79_0025	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_0026	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_0027	COG1660	Displays ATPase and GTPase activities
C3B79_0028	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_0030	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
C3B79_0031	COG1137	ATPase activity
C3B79_0032	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
C3B79_0033	COG3117	lipopolysaccharide transmembrane transporter activity
C3B79_0034	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
C3B79_0035	COG0517	IMP dehydrogenase activity
C3B79_0035	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
C3B79_0036	COG1127	ABC transporter
C3B79_0037	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
C3B79_0038	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3B79_0039	COG2854	intermembrane phospholipid transfer
C3B79_0041	COG5007	Belongs to the BolA IbaG family
C3B79_0042	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
C3B79_0043	COG0312	modulator of DNA gyrase
C3B79_0044	COG0312	modulator of DNA gyrase
C3B79_0045	COG3028	Belongs to the UPF0307 family
C3B79_0047	COG2926	Belongs to the UPF0265 family
C3B79_0056	COG1396	sequence-specific DNA binding
C3B79_0057	COG3135	benzoate transporter
C3B79_0063	COG0840	transmembrane signaling receptor activity
C3B79_0064	COG3047	cAMP biosynthetic process
C3B79_0066	COG3706	GGDEF domain
C3B79_0067	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3B79_0068	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3B79_0069	COG2197	response regulator
C3B79_0070	COG0629	single-stranded DNA binding
C3B79_0075	COG1278	Cold shock
C3B79_0076	COG4771	TonB-dependent receptor
C3B79_0077	COG3706	GGDEF domain
C3B79_0080	COG0745	RESPONSE REGULATOR receiver
C3B79_0085	COG3706	GGDEF domain
C3B79_0087	COG0346	lactoylglutathione lyase activity
C3B79_0092	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3B79_0093	COG1074	ATP-dependent DNA helicase activity
C3B79_0094	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
C3B79_0095	COG2259	Doxx family
C3B79_0096	COG1741	Belongs to the pirin family
C3B79_0098	COG0583	DNA-binding transcription factor activity
C3B79_0103	COG1175	transmembrane transport
C3B79_0105	COG3842	ATPase activity
C3B79_0107	COG3706	GGDEF domain
C3B79_0113	COG1247	-acetyltransferase
C3B79_0114	COG0753	catalase activity
C3B79_0119	COG0494	nUDIX hydrolase
C3B79_0120	COG0628	permease
C3B79_0123	COG2957	Belongs to the agmatine deiminase family
C3B79_0125	COG3284	Transcriptional regulator
C3B79_0128	COG1461	Dihydroxyacetone kinase
C3B79_0129	COG2376	Dihydroxyacetone kinase
C3B79_0130	COG2252	PERMEase
C3B79_0140	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C3B79_0141	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3B79_0142	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
C3B79_0143	COG0049	tRNA binding
C3B79_0144	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
C3B79_0145	COG2168	tRNA wobble position uridine thiolation
C3B79_0146	COG2923	Belongs to the DsrF TusC family
C3B79_0148	COG0251	oxidation-reduction process
C3B79_0149	COG2964	Protein conserved in bacteria
C3B79_0150	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
C3B79_0151	COG0085	RNA polymerase activity
C3B79_0152	COG0222	ribosome binding
C3B79_0153	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
C3B79_0154	COG0081	regulation of translation
C3B79_0155	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
C3B79_0156	COG0250	Participates in transcription elongation, termination and antitermination
C3B79_0157	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3B79_0159	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
C3B79_0164	COG0812	UDP-N-acetylmuramate dehydrogenase activity
C3B79_0165	COG0569	domain protein
C3B79_0166	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3B79_0167	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3B79_0171	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3B79_0172	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3B79_0173	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3B79_0175	COG3005	denitrification pathway
C3B79_0176	COG0243	molybdopterin cofactor binding
C3B79_0178	COG2205	protein histidine kinase activity
C3B79_0179	COG0745	RESPONSE REGULATOR receiver
C3B79_0182	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
C3B79_0185	COG2204	response regulator
C3B79_0187	COG2205	protein histidine kinase activity
C3B79_0192	COG5413	integral membrane protein
C3B79_0194	COG1522	sequence-specific DNA binding
C3B79_0195	COG2502	aspartate--ammonia ligase
C3B79_0196	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
C3B79_0197	COG0542	response to heat
C3B79_0199	COG0564	pseudouridine synthase activity
C3B79_0200	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3B79_0201	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3B79_0203	COG3681	Belongs to the UPF0597 family
C3B79_0205	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
C3B79_0206	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
C3B79_0207	COG1979	alcohol dehydrogenase
C3B79_0208	COG2207	Transcriptional regulator
C3B79_0209	COG3040	lipid binding
C3B79_0212	COG0688	phosphatidylethanolamine metabolic process
C3B79_0217	COG0540	Belongs to the ATCase OTCase family
C3B79_0218	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
C3B79_0219	COG1438	arginine binding
C3B79_0220	COG1288	antiporter activity
C3B79_0221	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
C3B79_0233	COG3250	beta-galactosidase activity
C3B79_0234	COG1609	Transcriptional regulator
C3B79_0235	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3B79_0237	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
C3B79_0238	COG2017	converts alpha-aldose to the beta-anomer
C3B79_0239	COG0667	Aldo Keto reductase
C3B79_0240	COG1968	undecaprenyl-diphosphatase activity
C3B79_0241	COG3806	Anti-sigma factor
C3B79_0242	COG1595	DNA-templated transcription, initiation
C3B79_0246	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
C3B79_0248	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
C3B79_0253	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3B79_0254	COG2146	nitrite reductase [NAD(P)H] activity
C3B79_0255	COG2146	nitrite reductase [NAD(P)H] activity
C3B79_0256	COG2116	formate transmembrane transporter activity
C3B79_0257	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3B79_0257	COG1648	precorrin-2 dehydrogenase activity
C3B79_0258	COG1648	precorrin-2 dehydrogenase activity
C3B79_0258	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3B79_0259	COG2239	Acts as a magnesium transporter
C3B79_0260	COG2239	Acts as a magnesium transporter
C3B79_0262	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
C3B79_0263	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
C3B79_0265	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
C3B79_0267	COG0514	ATP-dependent DNA helicase (RecQ)
C3B79_0268	COG2050	protein possibly involved in aromatic compounds catabolism
C3B79_0271	COG2258	MOSC domain
C3B79_0272	COG1177	transmembrane transport
C3B79_0273	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3B79_0274	COG3842	ATPase activity
C3B79_0279	COG0174	glutamine synthetase
C3B79_0280	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3B79_0283	COG3045	CreA protein
C3B79_0284	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3B79_0285	COG0443	Heat shock 70 kDa protein
C3B79_0288	COG0366	Alpha amylase catalytic
C3B79_0289	COG1086	Polysaccharide biosynthesis protein
C3B79_0290	COG1086	Polysaccharide biosynthesis protein
C3B79_0291	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3B79_0301	COG1089	Catalyzes the conversion of GDP-D-mannose to GDP-4- dehydro-6-deoxy-D-mannose
C3B79_0304	COG1215	transferase activity, transferring glycosyl groups
C3B79_0307	COG0318	PFAM AMP-dependent synthetase and ligase
C3B79_0308	COG1028	Short-chain dehydrogenase reductase Sdr
C3B79_0311	COG1083	cytidylyl-transferase
C3B79_0313	COG2089	acid synthase
C3B79_0318	COG4310	Domain of unknown function (DUF2172)
C3B79_0326	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3B79_0327	COG0745	RESPONSE REGULATOR receiver
C3B79_0328	COG2205	protein histidine kinase activity
C3B79_0330	COG0281	malic enzyme
C3B79_0332	COG0702	epimerase
C3B79_0333	COG0254	rRNA binding
C3B79_0334	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3B79_0335	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3B79_0340	COG0129	dihydroxy-acid dehydratase activity
C3B79_0341	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3B79_0342	COG3978	acetolactate synthase activity
C3B79_0345	COG0606	chelatase, subunit chli
C3B79_0346	COG0204	Acyl-transferase
C3B79_0347	COG0204	Acyl-transferase
C3B79_0349	COG1335	isochorismatase
C3B79_0351	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3B79_0352	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
C3B79_0354	COG3084	Protein conserved in bacteria
C3B79_0355	COG2203	Gaf domain
C3B79_0355	COG3706	GGDEF domain
C3B79_0355	COG4251	negative regulation of phosphorylation
C3B79_0355	COG5001	Diguanylate cyclase
C3B79_0356	COG0789	Transcriptional regulator
C3B79_0358	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
C3B79_0359	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
C3B79_0360	COG1561	YicC-like family, N-terminal region
C3B79_0363	COG3306	glycosyltransferase involved in LPS biosynthesis
C3B79_0367	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3B79_0369	COG0156	8-amino-7-oxononanoate synthase activity
C3B79_0370	COG1063	alcohol dehydrogenase
C3B79_0371	COG3245	cytochrome
C3B79_0374	COG0210	DNA helicase
C3B79_0375	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C3B79_0376	COG2166	iron-sulfur cluster assembly
C3B79_0377	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C3B79_0385	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
C3B79_0386	COG4206	TonB-dependent receptor
C3B79_0387	COG0583	DNA-binding transcription factor activity
C3B79_0390	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
C3B79_0391	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
C3B79_0392	COG2223	nitrite transmembrane transporter activity
C3B79_0393	COG3279	Response regulator of the LytR AlgR family
C3B79_0394	COG3275	phosphorelay sensor kinase activity
C3B79_0396	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_0396	COG2205	protein histidine kinase activity
C3B79_0400	COG3188	usher protein
C3B79_0404	COG2223	nitrite transmembrane transporter activity
C3B79_0405	COG2081	HI0933 family
C3B79_0406	COG1528	Iron-storage protein
C3B79_0407	COG3706	GGDEF domain
C3B79_0408	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
C3B79_0409	COG0589	response to stress
C3B79_0417	COG3642	lipopolysaccharide core region biosynthetic process
C3B79_0418	COG0859	PFAM glycosyl transferase family 9
C3B79_0420	COG1758	RNA polymerase activity
C3B79_0421	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3B79_0422	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3B79_0425	COG2267	carboxylic ester hydrolase activity
C3B79_0426	COG0561	phosphatase activity
C3B79_0430	COG1840	ABC-type Fe3 transport system, periplasmic component
C3B79_0432	COG2271	Major facilitator Superfamily
C3B79_0433	COG0469	pyruvate kinase activity
C3B79_0439	COG1309	transcriptional regulator
C3B79_0440	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_0441	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_0442	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_0444	COG4191	Histidine kinase
C3B79_0444	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_0445	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3B79_0449	COG2205	protein histidine kinase activity
C3B79_0450	COG0745	RESPONSE REGULATOR receiver
C3B79_0451	COG2814	Major facilitator Superfamily
C3B79_0453	COG3977	Valine--pyruvate aminotransferase
C3B79_0454	COG0071	Belongs to the small heat shock protein (HSP20) family
C3B79_0455	COG0071	Belongs to the small heat shock protein (HSP20) family
C3B79_0456	COG2378	regulation of single-species biofilm formation
C3B79_0458	COG0187	DNA topoisomerase II activity
C3B79_0460	COG0592	DNA-directed DNA polymerase activity
C3B79_0461	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
C3B79_0467	COG0230	Belongs to the bacterial ribosomal protein bL34 family
C3B79_0468	COG0594	ribonuclease P activity
C3B79_0469	COG0706	membrane insertase activity
C3B79_0470	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
C3B79_0473	COG1120	ATPase activity
C3B79_0474	COG1120	ATPase activity
C3B79_0475	COG4615	Cyclic peptide transporter
C3B79_0476	COG4774	siderophore transport
C3B79_0477	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
C3B79_0478	COG0445	tRNA wobble uridine modification
C3B79_0479	COG0357	Ribosomal RNA small subunit methyltransferase G
C3B79_0480	COG1192	Involved in chromosome partitioning
C3B79_0481	COG1475	DNA binding
C3B79_0484	COG0356	it plays a direct role in the translocation of protons across the membrane
C3B79_0486	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
C3B79_0487	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
C3B79_0488	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
C3B79_0489	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
C3B79_0490	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
C3B79_0491	COG0355	proton-transporting ATP synthase activity, rotational mechanism
C3B79_0492	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
C3B79_0493	COG4452	Inner membrane protein CreD
C3B79_0495	COG2205	protein histidine kinase activity
C3B79_0496	COG2205	protein histidine kinase activity
C3B79_0497	COG0745	RESPONSE REGULATOR receiver
C3B79_0499	COG1349	DNA-binding transcription factor activity
C3B79_0500	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
C3B79_0501	COG2771	luxR family
C3B79_0503	COG0811	peptide transport
C3B79_0504	COG0811	peptide transport
C3B79_0505	COG0848	biopolymer transport protein
C3B79_0506	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
C3B79_0516	COG0402	S-adenosylhomocysteine deaminase activity
C3B79_0517	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
C3B79_0519	COG3165	ubiquinone biosynthetic process from chorismate
C3B79_0520	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3B79_0522	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
C3B79_0523	COG0805	protein transport
C3B79_0524	COG0084	hydrolase, TatD family'
C3B79_0528	COG0742	ribosomal rna small subunit methyltransferase
C3B79_0531	COG0248	Ppx GppA phosphatase
C3B79_0532	COG0513	Belongs to the DEAD box helicase family
C3B79_0533	COG3118	belongs to the thioredoxin family
C3B79_0534	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C3B79_0536	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
C3B79_0541	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3B79_0547	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3B79_0549	COG1609	Transcriptional regulator
C3B79_0553	COG2188	Transcriptional regulator
C3B79_0554	COG3604	Transcriptional regulator
C3B79_0555	COG0426	domain, Protein
C3B79_0555	COG1773	rubredoxin
C3B79_0556	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3B79_0558	COG0348	domain, Protein
C3B79_0559	COG0814	amino acid
C3B79_0565	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
C3B79_0567	COG0751	glycine-tRNA ligase activity
C3B79_0568	COG0752	glycyl-tRNA synthetase alpha subunit
C3B79_0569	COG0752	glycyl-tRNA synthetase alpha subunit
C3B79_0570	COG2818	Glycosylase
C3B79_0572	COG2885	chlorophyll binding
C3B79_0573	COG0251	oxidation-reduction process
C3B79_0574	COG0425	Belongs to the sulfur carrier protein TusA family
C3B79_0576	COG1653	transport
C3B79_0578	COG2205	protein histidine kinase activity
C3B79_0579	COG0745	RESPONSE REGULATOR receiver
C3B79_0580	COG0183	Belongs to the thiolase family
C3B79_0581	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3B79_0581	COG1024	Enoyl-CoA hydratase
C3B79_0582	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3B79_0584	COG0006	proline dipeptidase activity
C3B79_0585	COG1739	Uncharacterized protein family UPF0029
C3B79_0586	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3B79_0587	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
C3B79_0593	COG0045	succinate-CoA ligase (ADP-forming) activity
C3B79_0593	COG1042	CoA-binding domain protein
C3B79_0593	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3B79_0596	COG0583	DNA-binding transcription factor activity
C3B79_0598	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
C3B79_0599	COG0166	Belongs to the GPI family
C3B79_0602	COG0668	transmembrane transport
C3B79_0604	COG1309	transcriptional regulator
C3B79_0605	COG0756	dUTP diphosphatase activity
C3B79_0606	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3B79_0607	COG2003	Belongs to the UPF0758 family
C3B79_0608	COG0267	Belongs to the bacterial ribosomal protein bL33 family
C3B79_0610	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
C3B79_0611	COG2990	Protein conserved in bacteria
C3B79_0612	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
C3B79_0613	COG0859	PFAM glycosyl transferase family 9
C3B79_0614	COG0463	Glycosyl transferase, family 2
C3B79_0616	COG0859	PFAM glycosyl transferase family 9
C3B79_0617	COG1519	Transferase
C3B79_0621	COG1609	Transcriptional regulator
C3B79_0622	COG0604	alcohol dehydrogenase
C3B79_0626	COG1580	Controls the rotational direction of flagella during chemotaxis
C3B79_0627	COG3161	chorismate lyase activity
C3B79_0628	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
C3B79_0629	COG2937	Belongs to the GPAT DAPAT family
C3B79_0631	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
C3B79_0635	COG0534	Mate efflux family protein
C3B79_0636	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
C3B79_0637	COG2205	protein histidine kinase activity
C3B79_0638	COG0745	RESPONSE REGULATOR receiver
C3B79_0640	COG1045	serine acetyltransferase
C3B79_0642	COG3074	FtsZ-dependent cytokinesis
C3B79_0643	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
C3B79_0645	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3B79_0645	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3B79_0646	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
C3B79_0657	COG1609	Transcriptional regulator
C3B79_0658	COG3250	beta-galactosidase activity
C3B79_0659	COG2731	YhcH YjgK YiaL family protein
C3B79_0660	COG0531	amino acid
C3B79_0661	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3B79_0662	COG0531	amino acid
C3B79_0663	COG0385	Bile acid
C3B79_0664	COG1262	PFAM Formylglycine-generating sulfatase enzyme
C3B79_0668	COG0583	DNA-binding transcription factor activity
C3B79_0674	COG0210	DNA helicase
C3B79_0677	COG1943	Transposase
C3B79_0678	COG0583	DNA-binding transcription factor activity
C3B79_0688	COG1280	lysine exporter protein (LysE YggA)
C3B79_0691	COG2391	methyltransferase activity
C3B79_0692	COG0840	transmembrane signaling receptor activity
C3B79_0695	COG1280	lysine exporter protein (LysE YggA)
C3B79_0697	COG2962	Rard protein
C3B79_0699	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_0700	COG1396	sequence-specific DNA binding
C3B79_0703	COG0518	GMP synthase (glutamine-hydrolyzing) activity
C3B79_0703	COG0519	Catalyzes the synthesis of GMP from XMP
C3B79_0704	COG0686	Belongs to the AlaDH PNT family
C3B79_0705	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3B79_0709	COG1322	Protein conserved in bacteria
C3B79_0710	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3B79_0711	COG0569	domain protein
C3B79_0712	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3B79_0712	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3B79_0713	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C3B79_0714	COG0242	peptide deformylase activity
C3B79_0716	COG0758	DNA mediated transformation
C3B79_0717	COG2922	Belongs to the Smg family
C3B79_0718	COG0551	DNA topoisomerase type I activity
C3B79_0720	COG0009	L-threonylcarbamoyladenylate synthase
C3B79_0721	COG0408	coproporphyrinogen oxidase activity
C3B79_0722	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
C3B79_0726	COG0218	Necessary for normal cell division and for the maintenance of normal septation
C3B79_0728	COG3078	GTPase activator activity
C3B79_0730	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3B79_0731	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
C3B79_0733	COG2204	response regulator
C3B79_0734	COG3852	Histidine kinase
C3B79_0736	COG0174	glutamine synthetase
C3B79_0738	COG1295	ribonuclease BN
C3B79_0739	COG1295	ribonuclease BN
C3B79_0740	COG1490	D-aminoacyl-tRNA deacylase activity
C3B79_0741	COG1490	D-aminoacyl-tRNA deacylase activity
C3B79_0743	COG0456	acetyltransferase
C3B79_0745	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C3B79_0746	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3B79_0747	COG2610	gluconate transmembrane transporter activity
C3B79_0748	COG3265	gluconokinase activity
C3B79_0749	COG0129	dihydroxy-acid dehydratase activity
C3B79_0750	COG0800	Aldolase
C3B79_0751	COG1609	Transcriptional regulator
C3B79_0754	COG4942	peptidase
C3B79_0755	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
C3B79_0756	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3B79_0757	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
C3B79_0758	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
C3B79_0759	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
C3B79_0759	COG0316	Belongs to the HesB IscA family
C3B79_0760	COG1040	competence protein
C3B79_0761	COG0596	Alpha beta hydrolase
C3B79_0765	COG2183	response to ionizing radiation
C3B79_0766	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3B79_0767	COG0745	RESPONSE REGULATOR receiver
C3B79_0771	COG0051	transcription antitermination factor activity, RNA binding
C3B79_0773	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
C3B79_0774	COG0088	Forms part of the polypeptide exit tunnel
C3B79_0775	COG0089	rRNA binding
C3B79_0776	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
C3B79_0777	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
C3B79_0779	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
C3B79_0780	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
C3B79_0781	COG0255	Belongs to the universal ribosomal protein uL29 family
C3B79_0782	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
C3B79_0783	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
C3B79_0784	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
C3B79_0785	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
C3B79_0786	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
C3B79_0787	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
C3B79_0788	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C3B79_0789	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
C3B79_0790	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
C3B79_0791	COG1841	ribosomal large subunit assembly
C3B79_0792	COG0200	Binds to the 23S rRNA
C3B79_0793	COG0201	protein transport
C3B79_0794	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
C3B79_0795	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
C3B79_0796	COG0202	RNA polymerase activity
C3B79_0797	COG0203	ribosomal protein L17
C3B79_0808	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3B79_0810	COG4221	oxidoreductase activity
C3B79_0813	COG1770	oligopeptidase
C3B79_0817	COG3714	YhhN family
C3B79_0822	COG1301	dicarboxylic acid transport
C3B79_0824	COG2095	MarC family integral membrane protein
C3B79_0829	COG0741	lytic transglycosylase activity
C3B79_0831	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3B79_0836	COG0742	ribosomal rna small subunit methyltransferase
C3B79_0837	COG0552	protein localization to endoplasmic reticulum
C3B79_0838	COG2884	Cell division ATP-binding protein ftsE
C3B79_0839	COG2177	Part of the ABC transporter FtsEX involved in
C3B79_0841	COG0288	reversible hydration of carbon dioxide
C3B79_0842	COG2188	Transcriptional regulator
C3B79_0843	COG1228	amidohydrolase
C3B79_0844	COG0010	Belongs to the arginase family
C3B79_0845	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
C3B79_0846	COG2986	histidine ammonia-lyase
C3B79_0847	COG0387	Pfam Sodium calcium exchanger
C3B79_0848	COG0387	Pfam Sodium calcium exchanger
C3B79_0849	COG2200	EAL domain
C3B79_0851	COG2199	diguanylate cyclase activity
C3B79_0851	COG2200	EAL domain
C3B79_0859	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3B79_0860	COG1459	type II secretion system
C3B79_0864	COG4968	Prepilin-type N-terminal cleavage methylation domain
C3B79_0869	COG1077	Cell shape determining protein MreB Mrl
C3B79_0870	COG1792	Involved in formation and maintenance of cell shape
C3B79_0871	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
C3B79_0872	COG0424	maF-like protein
C3B79_0873	COG1530	ribonuclease E activity
C3B79_0875	COG3164	Protein of unknown function
C3B79_0877	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3B79_0878	COG0312	modulator of DNA gyrase
C3B79_0883	COG1263	PTS System
C3B79_0883	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_0884	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
C3B79_0888	COG0477	Major facilitator Superfamily
C3B79_0890	COG3437	response regulator, receiver
C3B79_0892	COG5002	protein histidine kinase activity
C3B79_0892	COG2205	protein histidine kinase activity
C3B79_0892	COG0784	Response regulator, receiver
C3B79_0893	COG2172	sigma factor antagonist activity
C3B79_0894	COG1366	Belongs to the anti-sigma-factor antagonist family
C3B79_0898	COG3700	Belongs to the class B bacterial acid phosphatase family
C3B79_0899	COG2321	neutral zinc metallopeptidase
C3B79_0903	COG1639	'signal transduction protein
C3B79_0908	COG0189	ligase activity
C3B79_0909	COG1114	Component of the transport system for branched-chain amino acids
C3B79_0910	COG1114	Component of the transport system for branched-chain amino acids
C3B79_0912	COG0745	RESPONSE REGULATOR receiver
C3B79_0916	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
C3B79_0917	COG0352	thiamine-phosphate diphosphorylase activity
C3B79_0918	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3B79_0920	COG2022	thiamine diphosphate biosynthetic process
C3B79_0921	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
C3B79_0927	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
C3B79_0930	COG3706	GGDEF domain
C3B79_0932	COG0814	amino acid
C3B79_0933	COG0814	amino acid
C3B79_0934	COG3932	Exopolysaccharide synthesis, ExoD
C3B79_0938	COG1733	regulation of RNA biosynthetic process
C3B79_0946	COG1494	fructose-1,6-bisphosphatase
C3B79_0949	COG2959	enzyme of heme biosynthesis
C3B79_0950	COG1587	Uroporphyrinogen-III synthase
C3B79_0951	COG0181	hydroxymethylbilane synthase activity
C3B79_0953	COG3072	Adenylate cyclase
C3B79_0955	COG1965	Belongs to the frataxin family
C3B79_0956	COG0019	diaminopimelate decarboxylase activity
C3B79_0957	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
C3B79_0960	COG1011	Hydrolase
C3B79_0964	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
C3B79_0965	COG0561	phosphatase activity
C3B79_0968	COG0842	Transport permease protein
C3B79_0968	COG1129	ABC transporter
C3B79_0971	COG1546	Belongs to the CinA family
C3B79_0971	COG1058	Belongs to the CinA family
C3B79_0972	COG1418	mRNA catabolic process
C3B79_0973	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
C3B79_0975	COG1522	sequence-specific DNA binding
C3B79_0976	COG1368	sulfuric ester hydrolase activity
C3B79_0982	COG1285	pathogenesis
C3B79_0987	COG4221	oxidoreductase activity
C3B79_0993	COG1979	alcohol dehydrogenase
C3B79_0994	COG1979	alcohol dehydrogenase
C3B79_0997	COG2873	o-acetylhomoserine
C3B79_0999	COG4533	DNA binding
C3B79_1003	COG5380	lipid catabolic process
C3B79_1004	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
C3B79_1008	COG2949	membrane
C3B79_1009	COG3291	Pkd domain containing protein
C3B79_1012	COG3539	Fimbrial protein
C3B79_1014	COG3188	usher protein
C3B79_1016	COG3539	Fimbrial protein
C3B79_1019	COG0318	PFAM AMP-dependent synthetase and ligase
C3B79_1020	COG1441	menaquinone biosynthetic process
C3B79_1021	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C3B79_1022	COG0596	Alpha beta hydrolase
C3B79_1023	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
C3B79_1025	COG1169	isochorismate synthase
C3B79_1027	COG1575	Belongs to the MenA family. Type 1 subfamily
C3B79_1034	COG0513	Belongs to the DEAD box helicase family
C3B79_1035	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_1036	COG1988	membrane-bound metal-dependent
C3B79_1039	COG1671	Belongs to the UPF0178 family
C3B79_1044	COG3263	regulation of cellular component size
C3B79_1045	COG3722	fumarate hydratase activity
C3B79_1046	COG0246	Mannitol dehydrogenase
C3B79_1047	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_1047	COG2213	PTS system mannitol-specific
C3B79_1050	COG1309	transcriptional regulator
C3B79_1051	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
C3B79_1053	COG3916	Acyl-homoserine-lactone synthase
C3B79_1054	COG2771	luxR family
C3B79_1057	COG3133	Outer membrane lipoprotein
C3B79_1058	COG0456	acetyltransferase
C3B79_1063	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
C3B79_1065	COG3031	protein transport across the cell outer membrane
C3B79_1066	COG1450	Type ii and iii secretion system protein
C3B79_1068	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3B79_1069	COG1459	type II secretion system
C3B79_1070	COG2165	general secretion pathway protein
C3B79_1073	COG2165	general secretion pathway protein
C3B79_1074	COG4795	General secretion pathway protein
C3B79_1075	COG4795	General secretion pathway protein
C3B79_1076	COG3156	type II secretion system protein K
C3B79_1078	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
C3B79_1081	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C3B79_1082	COG1011	Hydrolase
C3B79_1083	COG0494	nUDIX hydrolase
C3B79_1084	COG1218	3'(2'),5'-bisphosphate nucleotidase
C3B79_1085	COG0814	amino acid
C3B79_1086	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3B79_1087	COG2207	Transcriptional regulator
C3B79_1087	COG3708	Transcriptional regulator
C3B79_1089	COG0626	cystathionine gamma-synthase activity
C3B79_1090	COG0527	aspartate kinase activity
C3B79_1090	COG0460	homoserine dehydrogenase
C3B79_1093	COG4372	Transposase
C3B79_1094	COG3436	PFAM IS66 Orf2 family protein
C3B79_1096	COG3621	Patatin-like phospholipase
C3B79_1097	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
C3B79_1100	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
C3B79_1101	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3B79_1103	COG0137	argininosuccinate synthase activity
C3B79_1104	COG0165	Argininosuccinate lyase
C3B79_1110	COG0110	maltose O-acetyltransferase activity
C3B79_1111	COG3174	membrane
C3B79_1112	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
C3B79_1114	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
C3B79_1115	COG4208	sulfate ABC transporter
C3B79_1116	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
C3B79_1117	COG0583	DNA-binding transcription factor activity
C3B79_1118	COG3397	chitin binding
C3B79_1119	COG0840	transmembrane signaling receptor activity
C3B79_1128	COG0793	Belongs to the peptidase S41A family
C3B79_1128	COG4946	Tricorn protease homolog
C3B79_1132	COG1328	CTP reductase activity
C3B79_1133	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3B79_1136	COG1448	Aminotransferase
C3B79_1146	COG0513	Belongs to the DEAD box helicase family
C3B79_1149	COG3568	Endonuclease Exonuclease Phosphatase
C3B79_1150	COG0840	transmembrane signaling receptor activity
C3B79_1153	COG3112	Uncharacterised protein family (UPF0231)
C3B79_1155	COG3835	regulator
C3B79_1156	COG2610	gluconate transmembrane transporter activity
C3B79_1157	COG1929	Belongs to the glycerate kinase type-1 family
C3B79_1160	COG0583	DNA-binding transcription factor activity
C3B79_1161	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_1164	COG0347	Belongs to the P(II) protein family
C3B79_1165	COG1840	ABC-type Fe3 transport system, periplasmic component
C3B79_1167	COG3842	ATPase activity
C3B79_1168	COG2837	iron assimilation
C3B79_1169	COG1438	arginine binding
C3B79_1171	COG1126	abc transporter atp-binding protein
C3B79_1172	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_1173	COG4215	(ABC) transporter
C3B79_1174	COG4160	amino acid transport
C3B79_1175	COG0039	L-malate dehydrogenase activity
C3B79_1176	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
C3B79_1177	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3B79_1177	COG1017	nitric oxide dioxygenase activity
C3B79_1179	COG4536	flavin adenine dinucleotide binding
C3B79_1180	COG4137	Cytochrome C assembly protein
C3B79_1181	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C3B79_1182	COG0228	four-way junction DNA binding
C3B79_1183	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
C3B79_1184	COG0336	Belongs to the RNA methyltransferase TrmD family
C3B79_1185	COG0335	large ribosomal subunit rRNA binding
C3B79_1187	COG3066	DNA modification
C3B79_1189	COG1051	belongs to the nudix hydrolase family
C3B79_1191	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
C3B79_1192	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
C3B79_1193	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
C3B79_1195	COG0583	DNA-binding transcription factor activity
C3B79_1196	COG0640	Transcriptional regulator
C3B79_1197	COG0268	Binds directly to 16S ribosomal RNA
C3B79_1198	COG0728	peptidoglycan biosynthetic process
C3B79_1199	COG0196	riboflavin kinase activity
C3B79_1200	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
C3B79_1201	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
C3B79_1202	COG1047	Peptidyl-prolyl cis-trans
C3B79_1203	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
C3B79_1216	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3B79_1216	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
C3B79_1219	COG1854	S-ribosylhomocysteine lyase activity
C3B79_1220	COG3706	GGDEF domain
C3B79_1221	COG0557	exoribonuclease II activity
C3B79_1222	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3B79_1224	COG2153	protein acetylation
C3B79_1228	COG1914	H( )-stimulated, divalent metal cation uptake system
C3B79_1229	COG0360	Binds together with S18 to 16S ribosomal RNA
C3B79_1230	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
C3B79_1231	COG0359	binds to the 23S rRNA
C3B79_1232	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3B79_1237	COG1238	metal cluster binding
C3B79_1238	COG0612	Peptidase, M16
C3B79_1239	COG2918	glutathione biosynthetic process
C3B79_1242	COG1022	Amp-dependent synthetase and ligase
C3B79_1244	COG0456	acetyltransferase
C3B79_1246	COG0714	Associated with various cellular activities
C3B79_1248	COG3300	MHYT domain
C3B79_1248	COG5001	Diguanylate cyclase
C3B79_1250	COG3706	GGDEF domain
C3B79_1250	COG0745	RESPONSE REGULATOR receiver
C3B79_1257	COG1902	pentaerythritol trinitrate reductase activity
C3B79_1260	COG2957	Belongs to the agmatine deiminase family
C3B79_1261	COG0154	amidase activity
C3B79_1265	COG0513	Belongs to the DEAD box helicase family
C3B79_1272	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
C3B79_1274	COG1858	cytochrome C peroxidase
C3B79_1279	COG2070	2-Nitropropane dioxygenase
C3B79_1286	COG2816	NAD+ diphosphatase activity
C3B79_1287	COG2205	protein histidine kinase activity
C3B79_1289	COG0745	RESPONSE REGULATOR receiver
C3B79_1290	COG0745	RESPONSE REGULATOR receiver
C3B79_1291	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_1292	COG1136	(ABC) transporter
C3B79_1292	COG0577	efflux transmembrane transporter activity
C3B79_1293	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_1294	COG1126	abc transporter atp-binding protein
C3B79_1295	COG0765	amino acid transport
C3B79_1297	COG0765	amino acid transport
C3B79_1298	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
C3B79_1299	COG1505	serine-type exopeptidase activity
C3B79_1303	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
C3B79_1306	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3B79_1307	COG4991	sh3 domain protein
C3B79_1312	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
C3B79_1313	COG1940	carbohydrate kinase activity
C3B79_1314	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3B79_1315	COG0126	phosphoglycerate kinase activity
C3B79_1317	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3B79_1319	COG4232	protein-disulfide reductase activity
C3B79_1326	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
C3B79_1328	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
C3B79_1330	COG1595	DNA-templated transcription, initiation
C3B79_1331	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
C3B79_1334	COG0481	GTPase activity
C3B79_1335	COG0681	Belongs to the peptidase S26 family
C3B79_1336	COG0571	ribonuclease III activity
C3B79_1338	COG1381	Involved in DNA repair and RecF pathway recombination
C3B79_1339	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
C3B79_1343	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C3B79_1344	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_1345	COG3716	PTS system mannose fructose sorbose family IID component
C3B79_1346	COG3715	PTS system
C3B79_1347	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_1348	COG2222	sugar isomerase
C3B79_1350	COG1349	DNA-binding transcription factor activity
C3B79_1351	COG1349	DNA-binding transcription factor activity
C3B79_1352	COG3023	N-Acetylmuramoyl-L-alanine amidase
C3B79_1353	COG4807	Protein conserved in bacteria
C3B79_1356	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3B79_1358	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3B79_1359	COG3956	TIGRFAM MazG family protein
C3B79_1360	COG0504	CTP synthase activity
C3B79_1361	COG0148	phosphopyruvate hydratase activity
C3B79_1363	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
C3B79_1364	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C3B79_1365	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C3B79_1367	COG0585	pseudouridine synthase activity
C3B79_1368	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
C3B79_1369	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
C3B79_1370	COG1238	metal cluster binding
C3B79_1374	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
C3B79_1375	COG0828	Belongs to the bacterial ribosomal protein bS21 family
C3B79_1376	COG1610	YqeY-like protein
C3B79_1377	COG0358	DNA primase activity
C3B79_1378	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3B79_1384	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
C3B79_1405	COG0151	Belongs to the GarS family
C3B79_1406	COG0138	bifunctional purine biosynthesis protein purh
C3B79_1409	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
C3B79_1410	COG3036	rescue of stalled ribosome
C3B79_1411	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3B79_1413	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
C3B79_1415	COG0673	inositol 2-dehydrogenase activity
C3B79_1417	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3B79_1418	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3B79_1422	COG0477	Major facilitator Superfamily
C3B79_1424	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
C3B79_1425	COG1027	Aspartate ammonia-lyase
C3B79_1426	COG3030	protein affecting phage T7 exclusion by the F plasmid
C3B79_1427	COG0534	Mate efflux family protein
C3B79_1428	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
C3B79_1429	COG0459	protein refolding
C3B79_1431	COG5001	Diguanylate cyclase
C3B79_1431	COG3300	MHYT domain
C3B79_1433	COG0564	pseudouridine synthase activity
C3B79_1434	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3B79_1435	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3B79_1443	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3B79_1447	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
C3B79_1448	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
C3B79_1449	COG1178	ABC-type Fe3 transport system permease component
C3B79_1450	COG4143	(ABC) transporter
C3B79_1453	COG0066	3-isopropylmalate dehydratase activity
C3B79_1454	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
C3B79_1455	COG0473	3-isopropylmalate dehydrogenase activity
C3B79_1456	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3B79_1462	COG0028	Belongs to the TPP enzyme family
C3B79_1466	COG0857	belongs to the CobB CobQ family
C3B79_1466	COG0280	phosphate acetyltransferase
C3B79_1467	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
C3B79_1468	COG3092	negative regulation of chromosome organization
C3B79_1469	COG3013	Belongs to the UPF0304 family
C3B79_1470	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3B79_1471	COG2716	regulation of RNA biosynthetic process
C3B79_1473	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
C3B79_1474	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
C3B79_1477	COG3110	Uncharacterized protein conserved in bacteria (DUF2057)
C3B79_1482	COG5002	protein histidine kinase activity
C3B79_1482	COG2198	Histidine kinase
C3B79_1482	COG0784	Response regulator, receiver
C3B79_1487	COG0840	transmembrane signaling receptor activity
C3B79_1489	COG1464	Belongs to the NlpA lipoprotein family
C3B79_1490	COG2011	ABC-type metal ion transport system permease component
C3B79_1494	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
C3B79_1495	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3B79_1495	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C3B79_1496	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C3B79_1496	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3B79_1497	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
C3B79_1497	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
C3B79_1498	COG0802	atpase or kinase
C3B79_1503	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
C3B79_1504	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
C3B79_1505	COG1923	regulation of RNA biosynthetic process
C3B79_1506	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3B79_1507	COG0330	HflC and HflK could
C3B79_1508	COG0330	HflC and HflK could
C3B79_1509	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
C3B79_1510	COG0142	geranyltranstransferase activity
C3B79_1511	COG0261	This protein binds to 23S rRNA in the presence of protein L20
C3B79_1512	COG0211	Belongs to the bacterial ribosomal protein bL27 family
C3B79_1513	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
C3B79_1515	COG0318	PFAM AMP-dependent synthetase and ligase
C3B79_1518	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
C3B79_1520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3B79_1522	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3B79_1524	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C3B79_1525	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
C3B79_1527	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
C3B79_1528	COG3178	'Phosphotransferase
C3B79_1529	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3B79_1530	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
C3B79_1531	COG2252	PERMEase
C3B79_1532	COG2252	PERMEase
C3B79_1533	COG2252	PERMEase
C3B79_1535	COG0488	(ABC) transporter
C3B79_1540	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C3B79_1541	COG0741	lytic transglycosylase activity
C3B79_1545	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
C3B79_1546	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_1547	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_1548	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
C3B79_1554	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3B79_1556	COG3721	Heme iron utilization protein
C3B79_1557	COG0748	coenzyme F420 binding
C3B79_1561	COG4771	TonB-dependent receptor
C3B79_1562	COG2814	Major facilitator Superfamily
C3B79_1563	COG3655	Transcriptional regulator
C3B79_1567	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3B79_1568	COG2202	Pas domain
C3B79_1568	COG2205	protein histidine kinase activity
C3B79_1574	COG3397	chitin binding
C3B79_1575	COG2226	methyltransferase
C3B79_1576	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3B79_1577	COG1765	OsmC-like protein
C3B79_1580	COG3954	Phosphoribulokinase
C3B79_1581	COG2076	Multidrug Resistance protein
C3B79_1582	COG2076	Multidrug Resistance protein
C3B79_1583	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
C3B79_1584	COG0726	polysaccharide deacetylase
C3B79_1585	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3B79_1585	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C3B79_1586	COG0463	Glycosyl transferase, family 2
C3B79_1587	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
C3B79_1589	COG3089	Belongs to the UPF0270 family
C3B79_1590	COG2203	Gaf domain
C3B79_1590	COG5001	Diguanylate cyclase
C3B79_1590	COG4251	negative regulation of phosphorylation
C3B79_1590	COG3706	GGDEF domain
C3B79_1591	COG0429	hydrolase of the alpha beta-hydrolase fold
C3B79_1592	COG0835	chemotaxis
C3B79_1592	COG0784	Response regulator, receiver
C3B79_1594	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
C3B79_1595	COG1047	Peptidyl-prolyl cis-trans
C3B79_1596	COG2900	Belongs to the SlyX family
C3B79_1598	COG0545	Peptidyl-prolyl cis-trans isomerase
C3B79_1599	COG2204	response regulator
C3B79_1603	COG0737	Belongs to the 5'-nucleotidase family
C3B79_1604	COG2771	luxR family
C3B79_1604	COG2200	EAL domain
C3B79_1608	COG0305	Participates in initiation and elongation during chromosome replication
C3B79_1609	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3B79_1610	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3B79_1611	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3B79_1613	COG2200	EAL domain
C3B79_1613	COG2199	diguanylate cyclase activity
C3B79_1613	COG2203	Gaf domain
C3B79_1618	COG2197	response regulator
C3B79_1619	COG2205	protein histidine kinase activity
C3B79_1619	COG3437	response regulator, receiver
C3B79_1619	COG3850	Histidine kinase
C3B79_1619	COG4999	Histidine kinase
C3B79_1620	COG2205	protein histidine kinase activity
C3B79_1620	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_1625	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C3B79_1626	COG2201	protein-glutamate methylesterase activity
C3B79_1627	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
C3B79_1629	COG0840	transmembrane signaling receptor activity
C3B79_1630	COG0835	chemotaxis
C3B79_1632	COG0643	Histidine kinase
C3B79_1632	COG2198	Histidine kinase
C3B79_1634	COG0745	RESPONSE REGULATOR receiver
C3B79_1635	COG0840	transmembrane signaling receptor activity
C3B79_1639	COG1280	lysine exporter protein (LysE YggA)
C3B79_1640	COG0826	peptidase U32
C3B79_1647	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
C3B79_1652	COG0300	oxidoreductase activity
C3B79_1656	COG2610	gluconate transmembrane transporter activity
C3B79_1657	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3B79_1659	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3B79_1660	COG3622	Belongs to the hyi family
C3B79_1661	COG0235	Class ii aldolase
C3B79_1663	COG2084	Dehydrogenase
C3B79_1664	COG1349	DNA-binding transcription factor activity
C3B79_1665	COG1349	DNA-binding transcription factor activity
C3B79_1669	COG1388	LysM domain
C3B79_1670	COG4932	domain protein
C3B79_1670	COG2373	Large extracellular alpha-helical protein
C3B79_1670	COG1388	LysM domain
C3B79_1675	COG5001	Diguanylate cyclase
C3B79_1679	COG3710	Transcriptional regulator
C3B79_1687	COG1605	Chorismate mutase
C3B79_1687	COG0077	Prephenate dehydratase
C3B79_1693	COG3272	Protein of unknown function (DUF1722)
C3B79_1694	COG0789	Transcriptional regulator
C3B79_1695	COG0415	Belongs to the DNA photolyase family
C3B79_1697	COG4221	oxidoreductase activity
C3B79_1700	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
C3B79_1706	COG0783	Belongs to the Dps family
C3B79_1708	COG1151	hydroxylamine reductase activity
C3B79_1711	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3B79_1712	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3B79_1712	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
C3B79_1714	COG2771	luxR family
C3B79_1716	COG3501	Rhs element vgr protein
C3B79_1717	COG3501	Rhs element vgr protein
C3B79_1718	COG3501	Rhs element vgr protein
C3B79_1720	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
C3B79_1720	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
C3B79_1728	COG0693	protein deglycase activity
C3B79_1729	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
C3B79_1730	COG1666	GTP binding
C3B79_1732	COG2211	Major facilitator Superfamily
C3B79_1734	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3B79_1736	COG2813	Specifically methylates the guanine in position
C3B79_1737	COG0271	Belongs to the BolA IbaG family
C3B79_1739	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
C3B79_1740	COG1805	sodium ion transport
C3B79_1741	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
C3B79_1742	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
C3B79_1743	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
C3B79_1744	COG2871	sodium ion transport
C3B79_1745	COG1477	protein flavinylation
C3B79_1748	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
C3B79_1749	COG0840	transmembrane signaling receptor activity
C3B79_1750	COG0583	DNA-binding transcription factor activity
C3B79_1752	COG2363	Small membrane protein
C3B79_1753	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
C3B79_1755	COG0473	3-isopropylmalate dehydrogenase activity
C3B79_1756	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3B79_1757	COG1611	Belongs to the LOG family
C3B79_1758	COG3706	GGDEF domain
C3B79_1762	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C3B79_1762	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
C3B79_1764	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
C3B79_1769	COG3098	single-species biofilm formation
C3B79_1770	COG0564	pseudouridine synthase activity
C3B79_1771	COG0564	pseudouridine synthase activity
C3B79_1773	COG4580	involved in the transport of maltose and maltodextrins
C3B79_1776	COG1263	PTS System
C3B79_1776	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_1778	COG2171	N-acyltransferase activity
C3B79_1779	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
C3B79_1780	COG0024	Methionine aminopeptidase
C3B79_1781	COG0024	Methionine aminopeptidase
C3B79_1782	COG0052	Belongs to the universal ribosomal protein uS2 family
C3B79_1783	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
C3B79_1784	COG0528	UMP kinase activity
C3B79_1785	COG0233	cytoplasmic translational termination
C3B79_1787	COG0575	Belongs to the CDS family
C3B79_1788	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
C3B79_1789	COG0750	zinc metalloprotease
C3B79_1792	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3B79_1793	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C3B79_1794	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3B79_1795	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3B79_1796	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
C3B79_1798	COG0825	malonyl-CoA metabolic process
C3B79_1799	COG3710	Transcriptional regulator
C3B79_1801	COG0531	amino acid
C3B79_1802	COG1982	Orn Lys Arg decarboxylase major
C3B79_1803	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
C3B79_1806	COG0814	amino acid
C3B79_1807	COG1234	tRNA 3'-trailer cleavage
C3B79_1809	COG0531	amino acid
C3B79_1811	COG0488	(ABC) transporter
C3B79_1814	COG3590	peptidase
C3B79_1816	COG3706	GGDEF domain
C3B79_1824	COG0366	Alpha amylase catalytic
C3B79_1828	COG0463	Glycosyl transferase, family 2
C3B79_1833	COG2989	Protein conserved in bacteria
C3B79_1834	COG3108	Peptidase M15
C3B79_1836	COG2860	membrane
C3B79_1838	COG1196	nuclear chromosome segregation
C3B79_1839	COG1196	nuclear chromosome segregation
C3B79_1840	COG3115	cell septum assembly
C3B79_1841	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C3B79_1842	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
C3B79_1844	COG1328	CTP reductase activity
C3B79_1845	COG0602	queuosine metabolic process
C3B79_1851	COG1566	PFAM secretion protein HlyD family protein
C3B79_1852	COG1846	Transcriptional regulator
C3B79_1856	COG0281	malic enzyme
C3B79_1857	COG3290	protein histidine kinase activity
C3B79_1858	COG4565	transcriptional regulatory protein
C3B79_1859	COG0697	spore germination
C3B79_1861	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_1863	COG3284	Transcriptional regulator
C3B79_1864	COG1960	acyl-CoA dehydrogenase activity
C3B79_1865	COG1804	L-carnitine dehydratase bile acid-inducible protein F
C3B79_1866	COG0346	lactoylglutathione lyase activity
C3B79_1867	COG0745	RESPONSE REGULATOR receiver
C3B79_1868	COG5002	protein histidine kinase activity
C3B79_1871	COG4783	chaperone-mediated protein folding
C3B79_1874	COG3142	Participates in the control of copper homeostasis
C3B79_1876	COG0545	Peptidyl-prolyl cis-trans isomerase
C3B79_1877	COG1131	(ABC) transporter
C3B79_1881	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
C3B79_1883	COG0678	peroxiredoxin activity
C3B79_1885	COG0019	diaminopimelate decarboxylase activity
C3B79_1886	COG1115	amino acid carrier protein
C3B79_1887	COG0095	Lipoate-protein ligase
C3B79_1888	COG2233	PERMEase
C3B79_1890	COG3706	GGDEF domain
C3B79_1890	COG0745	RESPONSE REGULATOR receiver
C3B79_1892	COG0534	Mate efflux family protein
C3B79_1894	COG0281	malic enzyme
C3B79_1902	COG0733	neurotransmitter:sodium symporter activity
C3B79_1903	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3B79_1904	COG2199	diguanylate cyclase activity
C3B79_1904	COG2203	Gaf domain
C3B79_1905	COG1566	PFAM secretion protein HlyD family protein
C3B79_1906	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_1908	COG1032	radical SAM domain protein
C3B79_1912	COG3152	Membrane
C3B79_1916	COG0673	inositol 2-dehydrogenase activity
C3B79_1918	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
C3B79_1919	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
C3B79_1920	COG0739	heme binding
C3B79_1920	COG0741	lytic transglycosylase activity
C3B79_1920	COG1196	nuclear chromosome segregation
C3B79_1921	COG0366	Alpha amylase catalytic
C3B79_1922	COG0366	Alpha amylase catalytic
C3B79_1928	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3B79_1930	COG0788	formyltetrahydrofolate deformylase activity
C3B79_1931	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3B79_1933	COG3118	belongs to the thioredoxin family
C3B79_1935	COG0791	NLP P60 protein
C3B79_1936	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
C3B79_1937	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
C3B79_1940	COG1376	ErfK ybiS ycfS ynhG family protein
C3B79_1940	COG1388	LysM domain
C3B79_1943	COG0747	negative chemotaxis
C3B79_1945	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3B79_1946	COG4172	Belongs to the ABC transporter superfamily
C3B79_1950	COG1070	Carbohydrate kinase
C3B79_1952	COG0738	Major facilitator superfamily
C3B79_1953	COG1349	DNA-binding transcription factor activity
C3B79_1954	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
C3B79_1955	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3B79_1956	COG1737	Transcriptional regulator
C3B79_1957	COG1940	carbohydrate kinase activity
C3B79_1958	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3B79_1959	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3B79_1960	COG2731	YhcH YjgK YiaL family protein
C3B79_1962	COG4409	exo-alpha-(2->6)-sialidase activity
C3B79_1963	COG4409	exo-alpha-(2->6)-sialidase activity
C3B79_1970	COG0702	epimerase
C3B79_1971	COG1506	peptidase
C3B79_1971	COG0823	Involved in the tonB-independent uptake of proteins
C3B79_1972	COG1073	alpha beta
C3B79_1977	COG4869	propanediol catabolic process
C3B79_1978	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3B79_1979	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3B79_1980	COG1882	Formate acetyltransferase
C3B79_1981	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_1981	COG1454	alcohol dehydrogenase
C3B79_1983	COG1454	alcohol dehydrogenase
C3B79_1983	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_1984	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3B79_1985	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3B79_1986	COG4577	Carbon dioxide concentrating mechanism carboxysome shell protein
C3B79_1991	COG0583	DNA-binding transcription factor activity
C3B79_1993	COG0243	molybdopterin cofactor binding
C3B79_1999	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
C3B79_2000	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
C3B79_2003	COG1960	acyl-CoA dehydrogenase activity
C3B79_2005	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_2008	COG0469	pyruvate kinase activity
C3B79_2009	COG1737	Transcriptional regulator
C3B79_2012	COG0745	RESPONSE REGULATOR receiver
C3B79_2013	COG2274	protein secretion by the type I secretion system
C3B79_2016	COG2274	protein secretion by the type I secretion system
C3B79_2018	COG2994	toxin metabolic process
C3B79_2019	COG3064	Membrane
C3B79_2019	COG1073	alpha beta
C3B79_2019	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3B79_2020	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3B79_2020	COG1073	alpha beta
C3B79_2020	COG3064	Membrane
C3B79_2021	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3B79_2021	COG1073	alpha beta
C3B79_2021	COG3064	Membrane
C3B79_2022	COG1073	alpha beta
C3B79_2022	COG3064	Membrane
C3B79_2022	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3B79_2023	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
C3B79_2023	COG1073	alpha beta
C3B79_2023	COG3064	Membrane
C3B79_2025	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C3B79_2028	COG1677	Flagellar hook-basal body complex protein FliE
C3B79_2030	COG1766	The M ring may be actively involved in energy transduction
C3B79_2031	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3B79_2041	COG1987	bacterial-type flagellum assembly
C3B79_2042	COG1684	flagellar biosynthetic protein fliR
C3B79_2043	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3B79_2045	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3B79_2047	COG0455	bacterial-type flagellum organization
C3B79_2050	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
C3B79_2051	COG2198	Histidine kinase
C3B79_2051	COG0643	Histidine kinase
C3B79_2052	COG2201	protein-glutamate methylesterase activity
C3B79_2053	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3B79_2054	COG1360	Flagellar Motor Protein
C3B79_2055	COG1192	Involved in chromosome partitioning
C3B79_2057	COG0835	chemotaxis
C3B79_2060	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3B79_2061	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3B79_2062	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3B79_2063	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
C3B79_2064	COG1138	Cytochrome C-type biogenesis protein
C3B79_2065	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3B79_2066	COG4235	cytochrome complex assembly
C3B79_2066	COG3088	subunit of a heme lyase
C3B79_2067	COG4235	cytochrome complex assembly
C3B79_2067	COG3088	subunit of a heme lyase
C3B79_2071	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
C3B79_2072	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3B79_2072	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3B79_2075	COG0259	pyridoxamine-phosphate oxidase activity
C3B79_2076	COG0625	glutathione transferase activity
C3B79_2079	COG3153	acetyltransferase
C3B79_2080	COG2850	peptidyl-arginine hydroxylation
C3B79_2081	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C3B79_2082	COG2915	High frequency lysogenization protein hflD homolog
C3B79_2083	COG0482	sulfurtransferase activity
C3B79_2085	COG1187	pseudouridine synthase activity
C3B79_2087	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2090	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2090	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2090	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_2093	COG0456	acetyltransferase
C3B79_2096	COG1609	Transcriptional regulator
C3B79_2098	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_2098	COG1263	PTS System
C3B79_2099	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_2099	COG1263	PTS System
C3B79_2100	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C3B79_2104	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2109	COG2207	Transcriptional regulator
C3B79_2111	COG0538	isocitrate dehydrogenase activity
C3B79_2113	COG3048	D-serine ammonia-lyase activity
C3B79_2114	COG2610	gluconate transmembrane transporter activity
C3B79_2116	COG0583	DNA-binding transcription factor activity
C3B79_2118	COG3171	Protein conserved in bacteria
C3B79_2121	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
C3B79_2122	COG1715	Restriction endonuclease
C3B79_2135	COG2974	May be involved in recombination
C3B79_2143	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3B79_2146	COG3646	Phage regulatory protein
C3B79_2151	COG3646	Phage regulatory protein
C3B79_2151	COG3645	SOS response
C3B79_2202	COG1643	Atp-dependent helicase
C3B79_2204	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
C3B79_2207	COG3437	response regulator, receiver
C3B79_2208	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3B79_2209	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
C3B79_2210	COG0709	Synthesizes selenophosphate from selenide and ATP
C3B79_2213	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C3B79_2214	COG0840	transmembrane signaling receptor activity
C3B79_2215	COG1254	Belongs to the acylphosphatase family
C3B79_2216	COG0625	glutathione transferase activity
C3B79_2217	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3B79_2217	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3B79_2219	COG0489	protein tyrosine kinase activity
C3B79_2220	COG0572	uridine kinase
C3B79_2221	COG0717	Belongs to the dCTP deaminase family
C3B79_2222	COG0306	phosphate transporter
C3B79_2223	COG1530	ribonuclease E activity
C3B79_2225	COG0564	pseudouridine synthase activity
C3B79_2226	COG0546	phosphoglycolate phosphatase activity
C3B79_2227	COG0424	maF-like protein
C3B79_2228	COG2814	Major facilitator Superfamily
C3B79_2232	COG1399	metal-binding, possibly nucleic acid-binding protein
C3B79_2233	COG0333	Belongs to the bacterial ribosomal protein bL32 family
C3B79_2234	COG0416	fatty acid biosynthetic process
C3B79_2235	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C3B79_2237	COG1028	Short-chain dehydrogenase reductase Sdr
C3B79_2238	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3B79_2239	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3B79_2240	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3B79_2241	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C3B79_2242	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
C3B79_2243	COG0470	DNA polymerase III
C3B79_2244	COG0084	hydrolase, TatD family'
C3B79_2248	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
C3B79_2248	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3B79_2249	COG3008	intermembrane lipid transfer
C3B79_2250	COG2995	paraquat-inducible protein a
C3B79_2252	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
C3B79_2253	COG0372	Belongs to the citrate synthase family
C3B79_2260	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3B79_2265	COG4221	oxidoreductase activity
C3B79_2267	COG3141	response to X-ray
C3B79_2270	COG1067	ATP-dependent peptidase activity
C3B79_2271	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C3B79_2276	COG0116	Belongs to the methyltransferase superfamily
C3B79_2276	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C3B79_2278	COG0167	dihydroorotate dehydrogenase activity
C3B79_2279	COG2902	Dehydrogenase
C3B79_2281	COG0308	aminopeptidase N
C3B79_2283	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
C3B79_2284	COG1956	GAF domain-containing protein
C3B79_2287	COG3278	Belongs to the heme-copper respiratory oxidase family
C3B79_2290	COG2010	Cytochrome c
C3B79_2296	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3B79_2297	COG0589	response to stress
C3B79_2298	COG0037	tRNA processing
C3B79_2302	COG1869	D-ribose catabolic process
C3B79_2303	COG1129	ABC transporter
C3B79_2304	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3B79_2305	COG1879	ABC-type sugar transport system periplasmic component
C3B79_2306	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3B79_2307	COG1609	Transcriptional regulator
C3B79_2308	COG2199	diguanylate cyclase activity
C3B79_2310	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3B79_2315	COG0776	regulation of translation
C3B79_2316	COG0072	phenylalanine-tRNA ligase activity
C3B79_2316	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3B79_2317	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
C3B79_2318	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
C3B79_2319	COG0291	Belongs to the bacterial ribosomal protein bL35 family
C3B79_2320	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
C3B79_2321	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C3B79_2327	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3B79_2328	COG0546	phosphoglycolate phosphatase activity
C3B79_2330	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3B79_2331	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3B79_2332	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
C3B79_2333	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
C3B79_2334	COG3313	Fe-S protein
C3B79_2335	COG2942	2-epimerase
C3B79_2336	COG3716	PTS system mannose fructose sorbose family IID component
C3B79_2337	COG3715	PTS system
C3B79_2338	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_2338	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_2342	COG1609	Transcriptional regulator
C3B79_2343	COG2140	Oxalate decarboxylase
C3B79_2344	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
C3B79_2344	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2344	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3B79_2345	COG1105	Belongs to the carbohydrate kinase PfkB family
C3B79_2346	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_2346	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_2347	COG1609	Transcriptional regulator
C3B79_2348	COG0814	amino acid
C3B79_2350	COG5654	RES domain protein
C3B79_2351	COG0513	Belongs to the DEAD box helicase family
C3B79_2353	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
C3B79_2354	COG2890	protein-(glutamine-N5) methyltransferase activity
C3B79_2355	COG2840	Smr protein MutS2
C3B79_2357	COG3706	GGDEF domain
C3B79_2364	COG2824	Alkylphosphonate utilization operon protein PhnA
C3B79_2369	COG0384	phenazine biosynthesis protein PhzF
C3B79_2375	COG0242	peptide deformylase activity
C3B79_2379	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
C3B79_2380	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
C3B79_2382	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3B79_2383	COG1434	Gram-negative-bacterium-type cell wall biogenesis
C3B79_2385	COG0205	6-phosphofructokinase activity
C3B79_2387	COG1473	amidohydrolase
C3B79_2388	COG1011	Hydrolase
C3B79_2389	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
C3B79_2402	COG3593	DNA synthesis involved in DNA repair
C3B79_2406	COG0583	DNA-binding transcription factor activity
C3B79_2407	COG0730	response to heat
C3B79_2410	COG1181	Belongs to the D-alanine--D-alanine ligase family
C3B79_2412	COG0386	Belongs to the glutathione peroxidase family
C3B79_2413	COG0513	Belongs to the DEAD box helicase family
C3B79_2414	COG0456	acetyltransferase
C3B79_2421	COG2329	Antibiotic biosynthesis monooxygenase
C3B79_2422	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
C3B79_2427	COG3243	poly(R)-hydroxyalkanoic acid synthase
C3B79_2429	COG2501	S4 domain
C3B79_2431	COG1132	(ABC) transporter
C3B79_2433	COG1132	(ABC) transporter
C3B79_2435	COG3118	belongs to the thioredoxin family
C3B79_2436	COG0471	metal ion transport
C3B79_2437	COG0058	SHG alpha-glucan phosphorylase activity
C3B79_2447	COG0814	amino acid
C3B79_2448	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
C3B79_2449	COG0514	ATP-dependent DNA helicase (RecQ)
C3B79_2450	COG2766	serine protein kinase
C3B79_2452	COG2719	SpoVR family
C3B79_2453	COG2186	Transcriptional regulator
C3B79_2454	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
C3B79_2455	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
C3B79_2456	COG0586	Pfam SNARE associated Golgi protein
C3B79_2458	COG0556	nucleotide-excision repair
C3B79_2460	COG2985	domain, Protein
C3B79_2460	COG0569	domain protein
C3B79_2461	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
C3B79_2467	COG4565	transcriptional regulatory protein
C3B79_2468	COG3290	protein histidine kinase activity
C3B79_2469	COG1940	carbohydrate kinase activity
C3B79_2469	COG1846	Transcriptional regulator
C3B79_2470	COG0840	transmembrane signaling receptor activity
C3B79_2472	COG3012	SEC-C Motif Domain Protein
C3B79_2473	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
C3B79_2474	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
C3B79_2475	COG0247	lactate metabolic process
C3B79_2482	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
C3B79_2483	COG0437	4 iron, 4 sulfur cluster binding
C3B79_2484	COG3301	Polysulphide reductase, NrfD
C3B79_2485	COG1138	Cytochrome C-type biogenesis protein
C3B79_2486	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3B79_2487	COG4235	cytochrome complex assembly
C3B79_2487	COG3088	subunit of a heme lyase
C3B79_2489	COG1051	belongs to the nudix hydrolase family
C3B79_2495	COG1028	Short-chain dehydrogenase reductase Sdr
C3B79_2496	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3B79_2497	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3B79_2498	COG3433	isochorismatase activity
C3B79_2498	COG1535	isochorismatase
C3B79_2499	COG1021	2,3-dihydroxybenzoate-AMP ligase
C3B79_2503	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
C3B79_2504	COG3300	MHYT domain
C3B79_2504	COG5001	Diguanylate cyclase
C3B79_2507	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3B79_2508	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3B79_2510	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
C3B79_2511	COG0563	adenylate kinase activity
C3B79_2512	COG0326	Molecular chaperone. Has ATPase activity
C3B79_2513	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
C3B79_2515	COG3604	Transcriptional regulator
C3B79_2518	COG3383	formate dehydrogenase (NAD+) activity
C3B79_2519	COG3383	formate dehydrogenase (NAD+) activity
C3B79_2520	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3B79_2524	COG3158	transport of potassium into the cell
C3B79_2525	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
C3B79_2526	COG0651	ATP synthesis coupled electron transport
C3B79_2527	COG0650	Formate hydrogenlyase subunit 4
C3B79_2528	COG3261	NADH dehydrogenase
C3B79_2528	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
C3B79_2529	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3B79_2530	COG3260	NADH ubiquinone oxidoreductase 20
C3B79_2532	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3B79_2533	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3B79_2538	COG1921	L-seryl-tRNASec selenium transferase activity
C3B79_2540	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
C3B79_2541	COG0298	carbon dioxide binding
C3B79_2544	COG0375	protein maturation
C3B79_2545	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
C3B79_2546	COG3842	ATPase activity
C3B79_2548	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3B79_2549	COG0601	transmembrane transport
C3B79_2552	COG1773	rubredoxin
C3B79_2553	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
C3B79_2554	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
C3B79_2555	COG5557	Pfam Polysulphide reductase, NrfD
C3B79_2556	COG0437	4 iron, 4 sulfur cluster binding
C3B79_2557	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
C3B79_2559	COG0745	RESPONSE REGULATOR receiver
C3B79_2561	COG2198	Histidine kinase
C3B79_2561	COG0643	Histidine kinase
C3B79_2562	COG0643	Histidine kinase
C3B79_2562	COG2198	Histidine kinase
C3B79_2563	COG0840	transmembrane signaling receptor activity
C3B79_2564	COG0835	chemotaxis
C3B79_2566	COG2201	protein-glutamate methylesterase activity
C3B79_2567	COG2201	protein-glutamate methylesterase activity
C3B79_2569	COG0840	transmembrane signaling receptor activity
C3B79_2570	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3B79_2571	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3B79_2575	COG0659	secondary active sulfate transmembrane transporter activity
C3B79_2581	COG0672	)-iron permease
C3B79_2585	COG2814	Major facilitator Superfamily
C3B79_2587	COG1136	(ABC) transporter
C3B79_2588	COG1136	(ABC) transporter
C3B79_2598	COG1139	Iron-sulfur cluster binding protein
C3B79_2599	COG0247	lactate metabolic process
C3B79_2601	COG1620	l-lactate permease
C3B79_2602	COG0583	DNA-binding transcription factor activity
C3B79_2604	COG0346	lactoylglutathione lyase activity
C3B79_2605	COG0596	Alpha beta hydrolase
C3B79_2641	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3B79_2642	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C3B79_2642	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
C3B79_2643	COG0527	aspartate kinase activity
C3B79_2647	COG1368	sulfuric ester hydrolase activity
C3B79_2648	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3B79_2649	COG4667	esterase of the alpha-beta hydrolase superfamily
C3B79_2653	COG2221	Nitrite and sulphite reductase 4Fe-4S
C3B79_2654	COG1648	precorrin-2 dehydrogenase activity
C3B79_2654	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3B79_2657	COG0393	Putative heavy-metal-binding
C3B79_2661	COG1252	NADH dehydrogenase
C3B79_2664	COG2233	PERMEase
C3B79_2668	COG2354	Protein conserved in bacteria
C3B79_2671	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3B79_2672	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3B79_2679	COG0537	adenosine 5'-monophosphoramidase activity
C3B79_2682	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
C3B79_2685	COG1301	dicarboxylic acid transport
C3B79_2688	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3B79_2689	COG0861	Integral membrane protein TerC family
C3B79_2692	COG0444	Belongs to the ABC transporter superfamily
C3B79_2693	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3B79_2694	COG0601	transmembrane transport
C3B79_2696	COG2095	MarC family integral membrane protein
C3B79_2698	COG1454	alcohol dehydrogenase
C3B79_2698	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_2699	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
C3B79_2699	COG2199	diguanylate cyclase activity
C3B79_2701	COG3275	phosphorelay sensor kinase activity
C3B79_2702	COG3279	Response regulator of the LytR AlgR family
C3B79_2703	COG1966	Carbon starvation protein
C3B79_2705	COG1566	PFAM secretion protein HlyD family protein
C3B79_2707	COG1061	Type III restriction enzyme res subunit
C3B79_2708	COG2027	D-alanyl-D-alanine carboxypeptidase
C3B79_2709	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
C3B79_2711	COG0436	Aminotransferase
C3B79_2728	COG3422	double-strand break repair
C3B79_2729	COG1288	antiporter activity
C3B79_2730	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
C3B79_2733	COG0697	spore germination
C3B79_2734	COG4657	Part of a membrane complex involved in electron transport
C3B79_2735	COG2878	Part of a membrane complex involved in electron transport
C3B79_2736	COG4656	Part of a membrane complex involved in electron transport
C3B79_2738	COG4658	electron transport chain
C3B79_2739	COG4659	FMN binding
C3B79_2741	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C3B79_2742	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C3B79_2743	COG0346	lactoylglutathione lyase activity
C3B79_2746	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3B79_2747	COG2056	Na+-H+ antiporter family
C3B79_2749	COG2050	protein possibly involved in aromatic compounds catabolism
C3B79_2751	COG0247	lactate metabolic process
C3B79_2751	COG0277	FAD linked oxidase domain protein
C3B79_2753	COG1253	flavin adenine dinucleotide binding
C3B79_2754	COG1902	pentaerythritol trinitrate reductase activity
C3B79_2755	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
C3B79_2756	COG0647	UMP catabolic process
C3B79_2757	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3B79_2757	COG4651	solute:proton antiporter activity
C3B79_2759	COG0367	asparagine synthase
C3B79_2761	COG0625	glutathione transferase activity
C3B79_2762	COG0625	glutathione transferase activity
C3B79_2764	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
C3B79_2768	COG0564	pseudouridine synthase activity
C3B79_2769	COG5001	Diguanylate cyclase
C3B79_2771	COG0840	transmembrane signaling receptor activity
C3B79_2773	COG0392	lysyltransferase activity
C3B79_2773	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
C3B79_2774	COG2194	sulfuric ester hydrolase activity
C3B79_2780	COG0670	Belongs to the BI1 family
C3B79_2781	COG1289	transmembrane transporter activity
C3B79_2782	COG2920	part of a sulfur-relay system
C3B79_2783	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
C3B79_2784	COG0285	dihydrofolate synthase activity
C3B79_2785	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
C3B79_2786	COG0101	tRNA pseudouridine synthase activity
C3B79_2789	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3B79_2790	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3B79_2791	COG0671	phosphoesterase, PA-phosphatase related
C3B79_2792	COG1464	Belongs to the NlpA lipoprotein family
C3B79_2798	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
C3B79_2798	COG0574	Belongs to the PEP-utilizing enzyme family
C3B79_2799	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
C3B79_2809	COG1122	ATPase activity
C3B79_2811	COG2274	protein secretion by the type I secretion system
C3B79_2812	COG1242	4 iron, 4 sulfur cluster binding
C3B79_2814	COG0070	glutamate synthase
C3B79_2814	COG0067	glutamate synthase
C3B79_2814	COG0069	glutamate synthase activity
C3B79_2815	COG0493	'glutamate synthase
C3B79_2817	COG0765	amino acid transport
C3B79_2818	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_2821	COG0789	Transcriptional regulator
C3B79_2824	COG4104	PAAR repeat-containing protein
C3B79_2826	COG0513	Belongs to the DEAD box helicase family
C3B79_2827	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3B79_2833	COG2131	deaminase
C3B79_2835	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3B79_2836	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3B79_2837	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
C3B79_2838	COG0505	Belongs to the CarA family
C3B79_2839	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
C3B79_2843	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
C3B79_2844	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
C3B79_2845	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
C3B79_2846	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3B79_2847	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3B79_2848	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
C3B79_2849	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3B79_2851	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
C3B79_2853	COG2205	protein histidine kinase activity
C3B79_2853	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_2862	COG0023	Translation Initiation Factor
C3B79_2863	COG2119	membrane
C3B79_2869	COG2199	diguanylate cyclase activity
C3B79_2869	COG2203	Gaf domain
C3B79_2872	COG1196	nuclear chromosome segregation
C3B79_2875	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3B79_2877	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
C3B79_2878	COG3301	Polysulphide reductase, NrfD
C3B79_2879	COG0437	4 iron, 4 sulfur cluster binding
C3B79_2880	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
C3B79_2896	COG0582	viral genome integration into host DNA
C3B79_2901	COG0322	excinuclease ABC activity
C3B79_2902	COG2197	response regulator
C3B79_2903	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
C3B79_2904	COG2835	tetraacyldisaccharide 4'-kinase activity
C3B79_2905	COG1663	tetraacyldisaccharide 4'-kinase activity
C3B79_2906	COG1132	(ABC) transporter
C3B79_2907	COG2333	competence protein COMEC
C3B79_2907	COG0658	competence protein
C3B79_2910	COG0433	COG0433 Predicted ATPase
C3B79_2911	COG1448	Aminotransferase
C3B79_2913	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
C3B79_2914	COG1199	ATP-dependent helicase activity
C3B79_2916	COG0123	including yeast histone deacetylase and acetoin utilization protein
C3B79_2917	COG0477	Major facilitator Superfamily
C3B79_2918	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
C3B79_2924	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3B79_2927	COG2271	Major facilitator Superfamily
C3B79_2928	COG3706	GGDEF domain
C3B79_2929	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_2930	COG0765	amino acid transport
C3B79_2931	COG1126	abc transporter atp-binding protein
C3B79_2934	COG0531	amino acid
C3B79_2937	COG1253	flavin adenine dinucleotide binding
C3B79_2938	COG0704	Plays a role in the regulation of phosphate uptake
C3B79_2940	COG0581	inorganic phosphate transmembrane transporter activity
C3B79_2941	COG0573	inorganic phosphate transmembrane transporter activity
C3B79_2942	COG0590	tRNA wobble adenosine to inosine editing
C3B79_2946	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3B79_2950	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
C3B79_2951	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
C3B79_2952	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C3B79_2953	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3B79_2954	COG2204	response regulator
C3B79_2955	COG2204	response regulator
C3B79_2956	COG3852	Histidine kinase
C3B79_2957	COG2204	response regulator
C3B79_2959	COG2716	regulation of RNA biosynthetic process
C3B79_2960	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
C3B79_2961	COG0248	Ppx GppA phosphatase
C3B79_2962	COG2239	Acts as a magnesium transporter
C3B79_2966	COG3951	Flagellar rod assembly protein muramidase FlgJ
C3B79_2966	COG1705	Flagellar rod assembly protein muramidase FlgJ
C3B79_2967	COG1706	bacterial-type flagellum-dependent cell motility
C3B79_2968	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
C3B79_2969	COG4786	Flagellar basal body rod
C3B79_2970	COG4787	bacterial-type flagellum-dependent cell motility
C3B79_2973	COG1558	bacterial-type flagellum-dependent cell motility
C3B79_2974	COG1815	bacterial-type flagellum-dependent cell motility
C3B79_2975	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
C3B79_2976	COG0784	Response regulator, receiver
C3B79_2976	COG0835	chemotaxis
C3B79_2977	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
C3B79_2980	COG0622	Phosphoesterase
C3B79_2983	COG1187	pseudouridine synthase activity
C3B79_2986	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3B79_2987	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3B79_2991	COG1349	DNA-binding transcription factor activity
C3B79_2992	COG0697	spore germination
C3B79_3000	COG1278	Cold shock
C3B79_3004	COG2988	succinylglutamate desuccinylase activity
C3B79_3010	COG3132	Protein of unknown function, DUF480
C3B79_3013	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
C3B79_3018	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3B79_3033	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3B79_3036	COG0529	Catalyzes the synthesis of activated sulfate
C3B79_3037	COG3273	potassium ion transport
C3B79_3037	COG0471	metal ion transport
C3B79_3038	COG2895	sulfate adenylyltransferase (ATP) activity
C3B79_3042	COG0438	transferase activity, transferring glycosyl groups
C3B79_3043	COG3754	Rhamnan synthesis protein F
C3B79_3049	COG1091	dTDP-4-dehydrorhamnose reductase activity
C3B79_3052	COG1538	Outer membrane efflux protein
C3B79_3053	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_3054	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_3055	COG1309	transcriptional regulator
C3B79_3058	COG1946	Acyl-CoA thioesterase
C3B79_3060	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
C3B79_3062	COG0009	L-threonylcarbamoyladenylate synthase
C3B79_3064	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C3B79_3065	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3B79_3065	COG0512	Glutamine amidotransferase of anthranilate synthase
C3B79_3066	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3B79_3067	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3B79_3068	COG0135	phosphoribosylanthranilate isomerase activity
C3B79_3068	COG0134	indole-3-glycerol-phosphate synthase activity
C3B79_3069	COG0133	tryptophan synthase activity
C3B79_3070	COG0159	tryptophan synthase activity
C3B79_3076	COG1317	bacterial-type flagellum organization
C3B79_3096	COG0457	Tetratricopeptide repeat
C3B79_3101	COG4789	Type iii secretion
C3B79_3102	COG4789	Type iii secretion
C3B79_3111	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3B79_3112	COG4790	Type iii secretion
C3B79_3113	COG4790	Type iii secretion
C3B79_3114	COG4794	Type iii secretion
C3B79_3115	COG4791	protein targeting
C3B79_3116	COG4792	protein secretion
C3B79_3119	COG2801	Transposase and inactivated derivatives
C3B79_3120	COG2963	transposase activity
C3B79_3126	COG1120	ATPase activity
C3B79_3127	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
C3B79_3128	COG4772	TonB-dependent receptor
C3B79_3133	COG4264	IucA IucC family
C3B79_3134	COG0019	diaminopimelate decarboxylase activity
C3B79_3138	COG2351	hydroxyisourate hydrolase activity
C3B79_3145	COG0583	DNA-binding transcription factor activity
C3B79_3146	COG0583	DNA-binding transcription factor activity
C3B79_3147	COG0666	response to abiotic stimulus
C3B79_3149	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3B79_3150	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3B79_3151	COG1304	FMN binding
C3B79_3153	COG0549	Belongs to the carbamate kinase family
C3B79_3154	COG0402	S-adenosylhomocysteine deaminase activity
C3B79_3155	COG0402	S-adenosylhomocysteine deaminase activity
C3B79_3156	COG3039	Transposase
C3B79_3160	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_3163	COG3311	Transcriptional regulator
C3B79_3165	COG1335	isochorismatase
C3B79_3166	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3B79_3167	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3B79_3168	COG1304	FMN binding
C3B79_3169	COG0549	Belongs to the carbamate kinase family
C3B79_3172	COG0583	DNA-binding transcription factor activity
C3B79_3181	COG2003	Belongs to the UPF0758 family
C3B79_3189	COG3381	protein complex oligomerization
C3B79_3191	COG3005	denitrification pathway
C3B79_3192	COG0745	RESPONSE REGULATOR receiver
C3B79_3194	COG1879	ABC-type sugar transport system periplasmic component
C3B79_3195	COG2198	Histidine kinase
C3B79_3195	COG0784	Response regulator, receiver
C3B79_3195	COG2205	protein histidine kinase activity
C3B79_3196	COG2814	Major facilitator Superfamily
C3B79_3197	COG2814	Major facilitator Superfamily
C3B79_3198	COG0109	protoheme IX farnesyltransferase activity
C3B79_3199	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
C3B79_3200	COG1845	cytochrome c oxidase, subunit III
C3B79_3201	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3B79_3202	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3B79_3204	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
C3B79_3214	COG2211	Major facilitator Superfamily
C3B79_3217	COG0708	Exodeoxyribonuclease III
C3B79_3221	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_3222	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3B79_3226	COG0095	Lipoate-protein ligase
C3B79_3232	COG0640	Transcriptional regulator
C3B79_3236	COG1285	pathogenesis
C3B79_3243	COG0484	heat shock protein binding
C3B79_3245	COG0443	Heat shock 70 kDa protein
C3B79_3246	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
C3B79_3247	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
C3B79_3248	COG0497	DNA recombination
C3B79_3249	COG1227	inorganic diphosphatase activity
C3B79_3251	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_3252	COG1136	(ABC) transporter
C3B79_3252	COG0577	efflux transmembrane transporter activity
C3B79_3253	COG1136	(ABC) transporter
C3B79_3253	COG0577	efflux transmembrane transporter activity
C3B79_3254	COG1538	Outer membrane efflux protein
C3B79_3255	COG2375	cellular response to nickel ion
C3B79_3256	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
C3B79_3261	COG3152	Membrane
C3B79_3266	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3B79_3267	COG1917	Cupin 2, conserved barrel domain protein
C3B79_3267	COG1396	sequence-specific DNA binding
C3B79_3272	COG0531	amino acid
C3B79_3273	COG0531	amino acid
C3B79_3274	COG0531	amino acid
C3B79_3276	COG1283	sodium-dependent phosphate transmembrane transporter activity
C3B79_3278	COG3384	dioxygenase
C3B79_3279	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_3279	COG2205	protein histidine kinase activity
C3B79_3280	COG2205	protein histidine kinase activity
C3B79_3280	COG2198	Histidine kinase
C3B79_3280	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3B79_3280	COG0784	Response regulator, receiver
C3B79_3283	COG0813	purine-nucleoside phosphorylase activity
C3B79_3287	COG0488	(ABC) transporter
C3B79_3290	COG4319	ketosteroid isomerase
C3B79_3291	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
C3B79_3292	COG0083	homoserine kinase activity
C3B79_3295	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
C3B79_3296	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
C3B79_3299	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
C3B79_3301	COG0745	RESPONSE REGULATOR receiver
C3B79_3304	COG4988	ABC transporter
C3B79_3305	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
C3B79_3309	COG1720	tRNA m6t6A37 methyltransferase activity
C3B79_3310	COG3437	response regulator, receiver
C3B79_3310	COG2770	Histidine kinase
C3B79_3313	COG0542	response to heat
C3B79_3314	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3B79_3315	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3B79_3317	COG2190	(PTS) system
C3B79_3318	COG3706	GGDEF domain
C3B79_3318	COG0745	RESPONSE REGULATOR receiver
C3B79_3320	COG3038	cytochrome b561
C3B79_3323	COG0420	3'-5' exonuclease activity
C3B79_3326	COG2974	May be involved in recombination
C3B79_3329	COG4651	solute:proton antiporter activity
C3B79_3329	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3B79_3332	COG0469	pyruvate kinase activity
C3B79_3333	COG3264	Mechanosensitive ion channel
C3B79_3333	COG1196	nuclear chromosome segregation
C3B79_3335	COG2706	6-phosphogluconolactonase activity
C3B79_3339	COG0281	malic enzyme
C3B79_3344	COG0437	4 iron, 4 sulfur cluster binding
C3B79_3346	COG3383	formate dehydrogenase (NAD+) activity
C3B79_3355	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
C3B79_3356	COG1910	domain protein
C3B79_3357	COG3852	Histidine kinase
C3B79_3358	COG2204	response regulator
C3B79_3360	COG4662	Binding-protein-dependent transport system inner membrane component
C3B79_3362	COG0746	molybdenum cofactor guanylyltransferase activity
C3B79_3364	COG1289	transmembrane transporter activity
C3B79_3370	COG3220	belongs to the UPF0276 family
C3B79_3377	COG2205	protein histidine kinase activity
C3B79_3378	COG0745	RESPONSE REGULATOR receiver
C3B79_3380	COG4166	transmembrane transport
C3B79_3381	COG0601	transmembrane transport
C3B79_3382	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3B79_3383	COG0444	Belongs to the ABC transporter superfamily
C3B79_3384	COG4608	Belongs to the ABC transporter superfamily
C3B79_3385	COG2971	BadF BadG BcrA BcrD
C3B79_3389	COG0840	transmembrane signaling receptor activity
C3B79_3392	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3B79_3393	COG3724	N-succinylarginine dihydrolase activity
C3B79_3394	COG0616	signal peptide processing
C3B79_3395	COG1028	Short-chain dehydrogenase reductase Sdr
C3B79_3396	COG0583	DNA-binding transcription factor activity
C3B79_3398	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C3B79_3401	COG0583	DNA-binding transcription factor activity
C3B79_3404	COG1881	PFAM PEBP family protein
C3B79_3407	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
C3B79_3407	COG3408	Glycogen debranching enzyme
C3B79_3408	COG3408	Glycogen debranching enzyme
C3B79_3408	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
C3B79_3409	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
C3B79_3410	COG0739	heme binding
C3B79_3412	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
C3B79_3417	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3B79_3419	COG3091	SprT-like family
C3B79_3421	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3B79_3422	COG0189	ligase activity
C3B79_3423	COG0189	ligase activity
C3B79_3427	COG1678	Uncharacterized ACR, COG1678
C3B79_3428	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
C3B79_3429	COG3104	oligopeptide transport
C3B79_3432	COG0714	Associated with various cellular activities
C3B79_3436	COG1115	amino acid carrier protein
C3B79_3438	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
C3B79_3441	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
C3B79_3444	COG1301	dicarboxylic acid transport
C3B79_3445	COG2877	3-deoxy-8-phosphooctulonate synthase activity
C3B79_3446	COG2912	Transglutaminase-like superfamily
C3B79_3449	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
C3B79_3450	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
C3B79_3451	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
C3B79_3454	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C3B79_3455	COG0737	Belongs to the 5'-nucleotidase family
C3B79_3456	COG0193	aminoacyl-tRNA hydrolase activity
C3B79_3457	COG0012	GTP binding
C3B79_3466	COG0490	domain, Protein
C3B79_3466	COG0471	metal ion transport
C3B79_3468	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
C3B79_3473	COG0366	Alpha amylase catalytic
C3B79_3477	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
C3B79_3477	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3B79_3477	COG1013	pyruvate-flavodoxin oxidoreductase activity
C3B79_3477	COG0674	pyruvate-flavodoxin oxidoreductase activity
C3B79_3478	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3B79_3478	COG0674	pyruvate-flavodoxin oxidoreductase activity
C3B79_3478	COG1013	pyruvate-flavodoxin oxidoreductase activity
C3B79_3478	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
C3B79_3480	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3B79_3482	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_3484	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3B79_3487	COG0180	Tryptophanyl-tRNA synthetase
C3B79_3489	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3B79_3490	COG0338	D12 class N6 adenine-specific DNA methyltransferase
C3B79_3492	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
C3B79_3493	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
C3B79_3499	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
C3B79_3500	COG0583	DNA-binding transcription factor activity
C3B79_3504	COG0583	DNA-binding transcription factor activity
C3B79_3507	COG0739	heme binding
C3B79_3509	COG1511	domain protein
C3B79_3509	COG3264	Mechanosensitive ion channel
C3B79_3510	COG0584	glycerophosphoryl diester phosphodiesterase
C3B79_3514	COG1053	succinate dehydrogenase
C3B79_3515	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3B79_3516	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
C3B79_3521	COG3214	Protein conserved in bacteria
C3B79_3522	COG4106	trans-aconitate 2-methyltransferase activity
C3B79_3529	COG0745	RESPONSE REGULATOR receiver
C3B79_3530	COG0642	Histidine kinase
C3B79_3534	COG0516	GMP reductase activity
C3B79_3536	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
C3B79_3537	COG3647	Membrane
C3B79_3539	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3B79_3541	COG3706	GGDEF domain
C3B79_3543	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3B79_3546	COG3706	GGDEF domain
C3B79_3548	COG1335	isochorismatase
C3B79_3549	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
C3B79_3551	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C3B79_3552	COG1702	phosphate starvation-inducible protein PhoH
C3B79_3553	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
C3B79_3554	COG4535	Mg2 and Co2 transporter CorC
C3B79_3555	COG0815	Transfers the fatty acyl group on membrane lipoproteins
C3B79_3556	COG2888	peptidyl-tyrosine sulfation
C3B79_3557	COG0495	leucyl-tRNA aminoacylation
C3B79_3561	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
C3B79_3562	COG0799	negative regulation of ribosome biogenesis
C3B79_3563	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
C3B79_3564	COG0768	penicillin binding
C3B79_3565	COG0772	Belongs to the SEDS family
C3B79_3566	COG0772	Belongs to the SEDS family
C3B79_3567	COG2951	lytic endotransglycosylase activity
C3B79_3568	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
C3B79_3570	COG1686	Belongs to the peptidase S11 family
C3B79_3571	COG2921	Belongs to the UPF0250 family
C3B79_3572	COG0321	lipoyl(octanoyl) transferase activity
C3B79_3573	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
C3B79_3575	COG3545	Serine hydrolase
C3B79_3576	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
C3B79_3580	COG0789	Transcriptional regulator
C3B79_3582	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3B79_3583	COG1970	mechanosensitive ion channel activity
C3B79_3584	COG3706	GGDEF domain
C3B79_3585	COG4974	Belongs to the 'phage' integrase family
C3B79_3586	COG0716	FMN binding
C3B79_3587	COG0312	modulator of DNA gyrase
C3B79_3588	COG0312	modulator of DNA gyrase
C3B79_3602	COG2205	protein histidine kinase activity
C3B79_3604	COG3275	phosphorelay sensor kinase activity
C3B79_3605	COG3279	Response regulator of the LytR AlgR family
C3B79_3606	COG1966	Carbon starvation protein
C3B79_3607	COG1966	Carbon starvation protein
C3B79_3609	COG0114	fumarate hydratase activity
C3B79_3611	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
C3B79_3613	COG2211	Major facilitator Superfamily
C3B79_3614	COG1185	polyribonucleotide nucleotidyltransferase activity
C3B79_3615	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
C3B79_3616	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
C3B79_3617	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
C3B79_3618	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
C3B79_3619	COG0195	Participates in both transcription termination and antitermination
C3B79_3620	COG0779	Required for maturation of 30S ribosomal subunits
C3B79_3623	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3B79_3624	COG0149	triose-phosphate isomerase activity
C3B79_3625	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3B79_3626	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
C3B79_3627	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3B79_3628	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
C3B79_3629	COG1534	Rna-binding protein
C3B79_3631	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
C3B79_3632	COG1360	Flagellar Motor Protein
C3B79_3633	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3B79_3634	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3B79_3635	COG1722	exodeoxyribonuclease VII activity
C3B79_3636	COG0142	geranyltranstransferase activity
C3B79_3637	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
C3B79_3642	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C3B79_3643	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
C3B79_3645	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3B79_3646	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
C3B79_3650	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3B79_3650	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3B79_3651	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
C3B79_3653	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
C3B79_3656	COG3381	protein complex oligomerization
C3B79_3660	COG5001	Diguanylate cyclase
C3B79_3660	COG3300	MHYT domain
C3B79_3662	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3B79_3663	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3B79_3664	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
C3B79_3665	COG0511	ligase activity, forming carbon-carbon bonds
C3B79_3666	COG0439	Biotin carboxylase
C3B79_3668	COG4145	pantothenate transmembrane transporter activity
C3B79_3669	COG4145	pantothenate transmembrane transporter activity
C3B79_3671	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_3671	COG1263	PTS System
C3B79_3671	COG2190	(PTS) system
C3B79_3672	COG0583	DNA-binding transcription factor activity
C3B79_3673	COG0604	alcohol dehydrogenase
C3B79_3674	COG2264	protein methyltransferase activity
C3B79_3677	COG0778	Nitroreductase
C3B79_3678	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3B79_3678	COG1902	pentaerythritol trinitrate reductase activity
C3B79_3680	COG0616	signal peptide processing
C3B79_3684	COG3139	Protein of unknown function (DUF1315)
C3B79_3685	COG0252	asparaginase activity
C3B79_3686	COG0252	asparaginase activity
C3B79_3687	COG0786	glutamate:sodium symporter activity
C3B79_3689	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
C3B79_3690	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
C3B79_3691	COG0384	phenazine biosynthesis protein PhzF
C3B79_3692	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
C3B79_3693	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3B79_3694	COG0175	sulfate reduction
C3B79_3695	COG2113	Glycine betaine
C3B79_3696	COG4176	ABC-type proline glycine betaine transport system permease component
C3B79_3697	COG4175	Glycine betaine
C3B79_3700	COG2966	Psort location CytoplasmicMembrane, score
C3B79_3702	COG0521	Mo-molybdopterin cofactor biosynthetic process
C3B79_3704	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3B79_3705	COG1028	Short-chain dehydrogenase reductase Sdr
C3B79_3707	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3B79_3712	COG2986	histidine ammonia-lyase
C3B79_3717	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3B79_3718	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3B79_3727	COG1858	cytochrome C peroxidase
C3B79_3730	COG2313	pseudouridylate synthase activity
C3B79_3731	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3B79_3738	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
C3B79_3739	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
C3B79_3743	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
C3B79_3745	COG2195	Cleaves the N-terminal amino acid of tripeptides
C3B79_3748	COG4608	Belongs to the ABC transporter superfamily
C3B79_3749	COG0444	Belongs to the ABC transporter superfamily
C3B79_3751	COG4239	(ABC) transporter, permease
C3B79_3752	COG4174	ABC transporter (Permease)
C3B79_3753	COG0601	transmembrane transport
C3B79_3757	COG0811	peptide transport
C3B79_3758	COG0811	peptide transport
C3B79_3759	COG0848	biopolymer transport protein
C3B79_3770	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3B79_3772	COG0840	transmembrane signaling receptor activity
C3B79_3774	COG1278	Cold shock
C3B79_3782	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
C3B79_3783	COG1162	GTPase activity
C3B79_3784	COG1162	GTPase activity
C3B79_3785	COG0688	phosphatidylethanolamine metabolic process
C3B79_3786	COG4628	conserved protein (DUF2132)
C3B79_3789	COG3059	membrane
C3B79_3790	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3B79_3792	COG2207	Transcriptional regulator
C3B79_3794	COG3300	MHYT domain
C3B79_3794	COG5001	Diguanylate cyclase
C3B79_3795	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
C3B79_3797	COG4412	M6 family metalloprotease domain protein
C3B79_3797	COG3291	Pkd domain containing protein
C3B79_3802	COG1132	(ABC) transporter
C3B79_3803	COG1132	(ABC) transporter
C3B79_3806	COG2897	thiosulfate sulfurtransferase activity
C3B79_3807	COG2066	Belongs to the glutaminase family
C3B79_3808	COG2066	Belongs to the glutaminase family
C3B79_3809	COG3171	Protein conserved in bacteria
C3B79_3810	COG0220	tRNA (guanine-N7-)-methyltransferase activity
C3B79_3811	COG2234	aminopeptidase activity
C3B79_3811	COG4935	Belongs to the peptidase S8 family
C3B79_3812	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3B79_3813	COG2771	luxR family
C3B79_3813	COG2200	EAL domain
C3B79_3815	COG1090	epimerase
C3B79_3816	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
C3B79_3817	COG4181	ATPase activity
C3B79_3818	COG2755	lipolytic protein G-D-S-L family
C3B79_3819	COG0784	Response regulator, receiver
C3B79_3819	COG0835	chemotaxis
C3B79_3822	COG2985	domain, Protein
C3B79_3822	COG0569	domain protein
C3B79_3823	COG1272	protein, Hemolysin III
C3B79_3825	COG0076	glutamate decarboxylase activity
C3B79_3826	COG2917	probably involved in intracellular septation
C3B79_3827	COG2350	Protein conserved in bacteria
C3B79_3829	COG1555	photosystem II stabilization
C3B79_3830	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3B79_3832	COG3104	oligopeptide transport
C3B79_3833	COG0745	RESPONSE REGULATOR receiver
C3B79_3839	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
C3B79_3842	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
C3B79_3843	COG1280	lysine exporter protein (LysE YggA)
C3B79_3849	COG0316	Belongs to the HesB IscA family
C3B79_3851	COG0038	chloride channel
C3B79_3853	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
C3B79_3856	COG0671	phosphoesterase, PA-phosphatase related
C3B79_3858	COG3437	response regulator, receiver
C3B79_3858	COG0784	Response regulator, receiver
C3B79_3861	COG2076	Multidrug Resistance protein
C3B79_3863	COG0346	lactoylglutathione lyase activity
C3B79_3864	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3B79_3865	COG1643	Atp-dependent helicase
C3B79_3868	COG1489	DNA binding
C3B79_3869	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3B79_3870	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
C3B79_3874	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
C3B79_3875	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
C3B79_3877	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
C3B79_3881	COG1924	4 iron, 4 sulfur cluster binding
C3B79_3882	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
C3B79_3883	COG0842	Transport permease protein
C3B79_3884	COG1131	(ABC) transporter
C3B79_3887	COG0163	prenyltransferase activity
C3B79_3888	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3B79_3890	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
C3B79_3893	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
C3B79_3900	COG0840	transmembrane signaling receptor activity
C3B79_3905	COG0529	Catalyzes the synthesis of activated sulfate
C3B79_3906	COG3273	potassium ion transport
C3B79_3906	COG0471	metal ion transport
C3B79_3907	COG2895	sulfate adenylyltransferase (ATP) activity
C3B79_3908	COG0175	sulfate reduction
C3B79_3909	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3B79_3909	COG1648	precorrin-2 dehydrogenase activity
C3B79_3910	COG0330	HflC and HflK could
C3B79_3911	COG0330	HflC and HflK could
C3B79_3912	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3B79_3913	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
C3B79_3913	COG0517	IMP dehydrogenase activity
C3B79_3914	COG0488	(ABC) transporter
C3B79_3916	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
C3B79_3918	COG0583	DNA-binding transcription factor activity
C3B79_3925	COG0789	Transcriptional regulator
C3B79_3928	COG4372	Transposase
C3B79_3929	COG3436	PFAM IS66 Orf2 family protein
C3B79_3931	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3B79_3932	COG1376	ErfK ybiS ycfS ynhG family protein
C3B79_3934	COG0668	transmembrane transport
C3B79_3937	COG2731	YhcH YjgK YiaL family protein
C3B79_3940	COG1794	racemase activity, acting on amino acids and derivatives
C3B79_3943	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3B79_3949	COG0733	neurotransmitter:sodium symporter activity
C3B79_3952	COG0733	neurotransmitter:sodium symporter activity
C3B79_3955	COG0561	phosphatase activity
C3B79_3959	COG1522	sequence-specific DNA binding
C3B79_3962	COG1846	Transcriptional regulator
C3B79_3963	COG1764	response to oxidative stress
C3B79_3964	COG2130	NADP-dependent
C3B79_3966	COG1051	belongs to the nudix hydrolase family
C3B79_3970	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
C3B79_3971	COG1640	4-alpha-glucanotransferase
C3B79_3973	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3B79_3974	COG0676	glucose-6-phosphate 1-epimerase activity
C3B79_3975	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
C3B79_3992	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
C3B79_3993	COG2885	chlorophyll binding
C3B79_3994	COG0823	Involved in the tonB-independent uptake of proteins
C3B79_3997	COG0811	peptide transport
C3B79_3998	COG0824	Thioesterase
C3B79_3999	COG3790	cyd operon protein YbgE
C3B79_4000	COG4890	Cyd operon protein YbgT
C3B79_4001	COG1294	oxidase, subunit
C3B79_4002	COG1271	oxidase subunit
C3B79_4004	COG2255	four-way junction helicase activity
C3B79_4005	COG0632	four-way junction helicase activity
C3B79_4006	COG0840	transmembrane signaling receptor activity
C3B79_4007	COG0442	prolyl-tRNA aminoacylation
C3B79_4008	COG4221	oxidoreductase activity
C3B79_4011	COG1024	Enoyl-CoA hydratase
C3B79_4016	COG4166	transmembrane transport
C3B79_4019	COG1872	DUF167
C3B79_4020	COG0762	integral membrane protein
C3B79_4021	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3B79_4022	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3B79_4023	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
C3B79_4026	COG3022	response to hydroperoxide
C3B79_4027	COG0513	Belongs to the DEAD box helicase family
C3B79_4028	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
C3B79_4034	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3B79_4037	COG0776	regulation of translation
C3B79_4039	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
C3B79_4044	COG0560	Phosphoserine phosphatase
C3B79_4046	COG5002	protein histidine kinase activity
C3B79_4046	COG5001	Diguanylate cyclase
C3B79_4046	COG3447	MASE1 domain protein
C3B79_4047	COG0813	purine-nucleoside phosphorylase activity
C3B79_4048	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
C3B79_4049	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
C3B79_4050	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
C3B79_4052	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3B79_4053	COG0084	hydrolase, TatD family'
C3B79_4057	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3B79_4058	COG0004	ammonium transporteR
C3B79_4061	COG0795	lipopolysaccharide-transporting ATPase activity
C3B79_4062	COG0795	lipopolysaccharide-transporting ATPase activity
C3B79_4063	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
C3B79_4064	COG2927	DNA polymerase III (CHI subunit)
C3B79_4065	COG0525	valine-tRNA ligase activity
C3B79_4066	COG1253	flavin adenine dinucleotide binding
C3B79_4067	COG0586	Pfam SNARE associated Golgi protein
C3B79_4068	COG1686	Belongs to the peptidase S11 family
C3B79_4075	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
C3B79_4076	COG0527	aspartate kinase activity
C3B79_4077	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C3B79_4080	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
C3B79_4081	COG1546	Belongs to the CinA family
C3B79_4082	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
C3B79_4086	COG3068	Protein conserved in bacteria
C3B79_4087	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3B79_4088	COG0739	heme binding
C3B79_4093	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
C3B79_4094	COG1121	(ABC) transporter
C3B79_4095	COG1108	ABC-type Mn2 Zn2 transport systems permease components
C3B79_4096	COG0583	DNA-binding transcription factor activity
C3B79_4097	COG0697	spore germination
C3B79_4098	COG1573	uracil-dna glycosylase
C3B79_4099	COG2962	Rard protein
C3B79_4101	COG2827	Endonuclease containing a URI domain
C3B79_4104	COG1842	Phage shock protein A
C3B79_4105	COG0204	Acyl-transferase
C3B79_4110	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3B79_4117	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
C3B79_4119	COG0187	DNA topoisomerase II activity
C3B79_4121	COG1289	transmembrane transporter activity
C3B79_4122	COG1566	PFAM secretion protein HlyD family protein
C3B79_4125	COG1051	belongs to the nudix hydrolase family
C3B79_4126	COG3150	esterase
C3B79_4128	COG3151	Protein conserved in bacteria
C3B79_4130	COG0494	nUDIX hydrolase
C3B79_4131	COG1538	Outer membrane efflux protein
C3B79_4132	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
C3B79_4132	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
C3B79_4134	COG1560	Kdo2-lipid A biosynthetic process
C3B79_4138	COG1392	Phosphate transport regulator
C3B79_4139	COG0306	phosphate transporter
C3B79_4140	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C3B79_4147	COG0583	DNA-binding transcription factor activity
C3B79_4148	COG1380	Effector of murein hydrolase LrgA
C3B79_4149	COG1346	cytolysis
C3B79_4152	COG0617	tRNA 3'-terminal CCA addition
C3B79_4153	COG3409	Peptidoglycan-binding domain 1 protein
C3B79_4153	COG3267	Type II secretory pathway component ExeA
C3B79_4155	COG1194	a g-specific adenine glycosylase
C3B79_4156	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
C3B79_4158	COG3111	PFAM Bacterial OB fold (BOF) protein
C3B79_4159	COG3240	lipase activity
C3B79_4161	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
C3B79_4161	COG2885	chlorophyll binding
C3B79_4162	COG3009	Protein conserved in bacteria
C3B79_4163	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
C3B79_4163	COG3008	intermembrane lipid transfer
C3B79_4164	COG2995	paraquat-inducible protein a
C3B79_4166	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3B79_4168	COG3706	GGDEF domain
C3B79_4168	COG5001	Diguanylate cyclase
C3B79_4168	COG2203	Gaf domain
C3B79_4168	COG4251	negative regulation of phosphorylation
C3B79_4169	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3B79_4171	COG2813	Specifically methylates the guanine in position
C3B79_4172	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
C3B79_4174	COG0297	glycogen (starch) synthase activity
C3B79_4182	COG1757	Na H antiporter
C3B79_4183	COG0583	DNA-binding transcription factor activity
C3B79_4184	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3B79_4185	COG3842	ATPase activity
C3B79_4186	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3B79_4187	COG1177	transmembrane transport
C3B79_4188	COG1177	transmembrane transport
C3B79_4189	COG1012	belongs to the aldehyde dehydrogenase family
C3B79_4191	COG5006	permease, DMT superfamily
C3B79_4192	COG1522	sequence-specific DNA binding
C3B79_4193	COG0110	maltose O-acetyltransferase activity
C3B79_4194	COG0366	Alpha amylase catalytic
C3B79_4195	COG1263	PTS System
C3B79_4195	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3B79_4199	COG0252	asparaginase activity
C3B79_4202	COG1803	Methylglyoxal synthase
C3B79_4203	COG1803	Methylglyoxal synthase
C3B79_4209	COG1444	tRNA N-acetyltransferase activity
C3B79_4211	COG0835	chemotaxis
C3B79_4211	COG0784	Response regulator, receiver
C3B79_4221	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
C3B79_4222	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
C3B79_4223	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
C3B79_4227	COG0477	Major facilitator Superfamily
C3B79_4228	COG0523	cobalamin synthesis protein
C3B79_4230	COG1280	lysine exporter protein (LysE YggA)
C3B79_4232	COG2199	diguanylate cyclase activity
C3B79_4232	COG2200	EAL domain
C3B79_4233	COG2200	EAL domain
C3B79_4234	COG1049	propionate catabolic process, 2-methylcitrate cycle
C3B79_4235	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3B79_4236	COG0840	transmembrane signaling receptor activity
C3B79_4237	COG0840	transmembrane signaling receptor activity
C3B79_4239	COG3706	GGDEF domain
C3B79_4240	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3B79_4241	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3B79_4242	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
C3B79_4243	COG2186	Transcriptional regulator
C3B79_4249	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3B79_4250	COG1459	type II secretion system
C3B79_4254	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
C3B79_4255	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
C3B79_4258	COG0653	protein targeting
C3B79_4260	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
C3B79_4261	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
C3B79_4262	COG0849	cell division
C3B79_4263	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
C3B79_4264	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
C3B79_4265	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
C3B79_4266	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
C3B79_4267	COG0772	Belongs to the SEDS family
C3B79_4268	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
C3B79_4269	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3B79_4270	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
C3B79_4271	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
C3B79_4272	COG0768	penicillin binding
C3B79_4273	COG3116	cell division
C3B79_4274	COG0275	rRNA processing
C3B79_4275	COG2001	Belongs to the MraZ family
C3B79_4276	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
C3B79_4277	COG3107	peptidoglycan biosynthetic process
C3B79_pla003	COG0633	Ferredoxin
C3B79_pla013	COG0629	single-stranded DNA binding
C3B79_pla016	COG0714	Associated with various cellular activities
C3B79_pla024	COG5001	Diguanylate cyclase
C3B79_pla029	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
C3B79_pla053	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3B79_pla070	COG1192	Involved in chromosome partitioning
C3B79_pla085	COG3316	Transposase and inactivated derivatives
C3B79_pla087	COG3316	Transposase and inactivated derivatives
C3B79_pla099	COG0776	regulation of translation
C3B79_pla109	COG0616	signal peptide processing
C3B79_pla142	COG4974	Belongs to the 'phage' integrase family
C3B79_pla163	COG3316	Transposase and inactivated derivatives
C3B79_pla164	COG4372	Transposase
C3B79_pla165	COG3436	PFAM IS66 Orf2 family protein
C3B79_pla169	COG3316	Transposase and inactivated derivatives
C3B79_pla170	COG3173	Aminoglycoside phosphotransferase
C3B79_pla173	COG3316	Transposase and inactivated derivatives