locus-tag class description V429_00005 PF08299 Bacterial dnaA protein helix-turn-helix V429_00005 PF11638 DnaA N-terminal domain V429_00005 PF00308 Bacterial dnaA protein V429_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain V429_00010 PF02767 DNA polymerase III beta subunit, central domain V429_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain V429_00015 PF02463 RecF/RecN/SMC N terminal domain V429_00020 PF00986 DNA gyrase B subunit, carboxyl terminus V429_00020 PF01751 Toprim domain V429_00020 PF00204 DNA gyrase B V429_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00020 PF18053 DNA gyrase B subunit insert domain V429_00030 PF08279 HTH domain V429_00030 PF13280 WYL domain V429_00035 PF00011 Hsp20/alpha crystallin family V429_00040 PF00011 Hsp20/alpha crystallin family V429_00045 PF00155 Aminotransferase class I and II V429_00060 PF07690 Major Facilitator Superfamily V429_00065 PF00072 Response regulator receiver domain V429_00065 PF00486 Transcriptional regulatory protein, C terminal V429_00070 PF13492 GAF domain V429_00070 PF00512 His Kinase A (phospho-acceptor) domain V429_00070 PF13493 Domain of unknown function (DUF4118) V429_00070 PF02702 Osmosensitive K+ channel His kinase sensor domain V429_00070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00075 PF02669 K+-transporting ATPase, c chain V429_00090 PF03814 Potassium-transporting ATPase A subunit V429_00095 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V429_00095 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_00100 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_00100 PF00512 His Kinase A (phospho-acceptor) domain V429_00100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00105 PF00873 AcrB/AcrD/AcrF family V429_00110 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_00115 PF00440 Bacterial regulatory proteins, tetR family V429_00145 PF02887 Pyruvate kinase, alpha/beta domain V429_00145 PF00224 Pyruvate kinase, barrel domain V429_00150 PF07690 Major Facilitator Superfamily V429_00160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00160 PF00672 HAMP domain V429_00160 PF00512 His Kinase A (phospho-acceptor) domain V429_00165 PF14532 Sigma-54 interaction domain V429_00165 PF00072 Response regulator receiver domain V429_00165 PF02954 Bacterial regulatory protein, Fis family V429_00180 PF12146 Serine aminopeptidase, S33 V429_00185 PF00132 Bacterial transferase hexapeptide (six repeats) V429_00195 PF13291 ACT domain V429_00195 PF02824 TGS domain V429_00195 PF04607 Region found in RelA / SpoT proteins V429_00200 PF01192 RNA polymerase Rpb6 V429_00205 PF00625 Guanylate kinase V429_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V429_00225 PF00892 EamA-like transporter family V429_00245 PF03466 LysR substrate binding domain V429_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_00250 PF00579 tRNA synthetases class I (W and Y) V429_00255 PF00582 Universal stress protein family V429_00260 PF07055 Enoyl reductase FAD binding domain V429_00260 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V429_00260 PF12241 Trans-2-enoyl-CoA reductase catalytic region V429_00265 PF00990 Diguanylate cyclase, GGDEF domain V429_00270 PF00210 Ferritin-like domain V429_00280 PF08722 TnsA endonuclease N terminal V429_00280 PF08721 TnsA endonuclease C terminal V429_00295 PF11426 Tn7 transposition regulator TnsC V429_00295 PF13401 AAA domain V429_00300 PF13657 HipA N-terminal domain V429_00300 PF07804 HipA-like C-terminal domain V429_00305 PF12008 Type I restriction and modification enzyme - subunit R C terminal V429_00305 PF18766 SWI2/SNF2 ATPase V429_00305 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) V429_00315 PF17191 RecG wedge domain V429_00315 PF00270 DEAD/DEAH box helicase V429_00315 PF13749 Putative ATP-dependent DNA helicase recG C-terminal V429_00330 PF02384 N-6 DNA Methylase V429_00330 PF12161 HsdM N-terminal domain V429_00355 PF07690 Major Facilitator Superfamily V429_00360 PF01810 LysE type translocator V429_00375 PF15976 CS1-pili formation C-terminal V429_00375 PF16967 E-set like domain V429_00380 PF18649 EcpB C-terminal domain V429_00385 PF16449 Fimbrillin MatB V429_00390 PF00072 Response regulator receiver domain V429_00390 PF00196 Bacterial regulatory proteins, luxR family V429_00395 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_00395 PF00072 Response regulator receiver domain V429_00395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00395 PF00512 His Kinase A (phospho-acceptor) domain V429_00395 PF00989 PAS fold V429_00395 PF01627 Hpt domain V429_00405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00405 PF07694 5TMR of 5TMR-LYT V429_00405 PF06580 Histidine kinase V429_00410 PF00072 Response regulator receiver domain V429_00410 PF04397 LytTr DNA-binding domain V429_00415 PF07690 Major Facilitator Superfamily V429_00420 PF02222 ATP-grasp domain V429_00420 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain V429_00425 PF00731 AIR carboxylase V429_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_00440 PF03466 LysR substrate binding domain V429_00445 PF07715 TonB-dependent Receptor Plug Domain V429_00445 PF00593 TonB dependent receptor V429_00450 PF01177 Asp/Glu/Hydantoin racemase V429_00490 PF07969 Amidohydrolase family V429_00495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) V429_00500 PF01209 ubiE/COQ5 methyltransferase family V429_00505 PF02036 SCP-2 sterol transfer family V429_00510 PF03109 ABC1 family V429_00515 PF02416 mttA/Hcf106 family V429_00520 PF02416 mttA/Hcf106 family V429_00525 PF00902 Sec-independent protein translocase protein (TatC) V429_00530 PF01026 TatD related DNase V429_00535 PF00490 Delta-aminolevulinic acid dehydratase V429_00540 PF01432 Peptidase family M3 V429_00545 PF00563 EAL domain V429_00545 PF00990 Diguanylate cyclase, GGDEF domain V429_00545 PF03707 Bacterial signalling protein N terminal repeat V429_00550 PF04445 Putative SAM-dependent methyltransferase V429_00565 PF02541 Ppx/GppA phosphatase family V429_00570 PF00271 Helicase conserved C-terminal domain V429_00570 PF00270 DEAD/DEAH box helicase V429_00575 PF00085 Thioredoxin V429_00580 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V429_00580 PF07498 Rho termination factor, N-terminal domain V429_00580 PF07497 Rho termination factor, RNA-binding domain V429_00590 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase V429_00595 PF00175 Oxidoreductase NAD-binding domain V429_00600 PF04380 Membrane fusogenic activity V429_00605 PF12262 Bacterial virulence factor lipase N-terminal V429_00610 PF01694 Rhomboid family V429_00610 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease V429_00615 PF00581 Rhodanese-like domain V429_00630 PF00005 ABC transporter V429_00635 PF12399 Branched-chain amino acid ATP-binding cassette transporter V429_00635 PF00005 ABC transporter V429_00640 PF02653 Branched-chain amino acid transport system / permease component V429_00640 PF11862 Domain of unknown function (DUF3382) V429_00645 PF02653 Branched-chain amino acid transport system / permease component V429_00650 PF13458 Periplasmic binding protein V429_00655 PF00356 Bacterial regulatory proteins, lacI family V429_00660 PF11975 Family 4 glycosyl hydrolase C-terminal domain V429_00660 PF02056 Family 4 glycosyl hydrolase V429_00665 PF00367 phosphotransferase system, EIIB V429_00665 PF02378 Phosphotransferase system, EIIC V429_00670 PF07702 UTRA domain V429_00670 PF00392 Bacterial regulatory proteins, gntR family V429_00675 PF01590 GAF domain V429_00675 PF00158 Sigma-54 interaction domain V429_00680 PF00753 Metallo-beta-lactamase superfamily V429_00680 PF00301 Rubredoxin V429_00680 PF00258 Flavodoxin V429_00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_00685 PF18113 Rubredoxin binding C-terminal domain V429_00695 PF12801 4Fe-4S binding domain V429_00700 PF03222 Tryptophan/tyrosine permease family V429_00720 PF14306 PUA-like domain V429_00720 PF01747 ATP-sulfurylase V429_00735 PF05746 DALR anticodon binding domain V429_00735 PF02092 Glycyl-tRNA synthetase beta subunit V429_00740 PF02091 Glycyl-tRNA synthetase alpha subunit V429_00745 PF03352 Methyladenine glycosylase V429_00750 PF00857 Isochorismatase family V429_00755 PF13488 Glycine zipper V429_00755 PF00691 OmpA family V429_00760 PF01042 Endoribonuclease L-PSP V429_00765 PF01206 Sulfurtransferase TusA V429_00775 PF01547 Bacterial extracellular solute-binding protein V429_00780 PF00672 HAMP domain V429_00780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_00780 PF00512 His Kinase A (phospho-acceptor) domain V429_00785 PF00486 Transcriptional regulatory protein, C terminal V429_00785 PF00072 Response regulator receiver domain V429_00790 PF02803 Thiolase, C-terminal domain V429_00790 PF00108 Thiolase, N-terminal domain V429_00795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V429_00795 PF00378 Enoyl-CoA hydratase/isomerase V429_00795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V429_00800 PF00501 AMP-binding enzyme V429_00800 PF13193 AMP-binding enzyme C-terminal domain V429_00805 PF00557 Metallopeptidase family M24 V429_00810 PF01205 Uncharacterized protein family UPF0029 V429_00810 PF09186 Domain of unknown function (DUF1949) V429_00815 PF02386 Cation transport protein V429_00820 PF12724 Flavodoxin domain V429_00845 PF13607 Succinyl-CoA ligase like flavodoxin domain V429_00845 PF13380 CoA binding domain V429_00845 PF00583 Acetyltransferase (GNAT) family V429_00860 PF03466 LysR substrate binding domain V429_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_00865 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain V429_00865 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain V429_00870 PF00342 Phosphoglucose isomerase V429_00880 PF05552 Conserved TM helix V429_00880 PF00924 Mechanosensitive ion channel V429_00885 PF00440 Bacterial regulatory proteins, tetR family V429_00890 PF00692 dUTPase V429_00895 PF04127 DNA / pantothenate metabolism flavoprotein V429_00895 PF02441 Flavoprotein V429_00900 PF04002 RadC-like JAB domain V429_00905 PF00830 Ribosomal L28 family V429_00910 PF00471 Ribosomal protein L33 V429_00920 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain V429_00920 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain V429_00920 PF06827 Zinc finger found in FPG and IleRS V429_00925 PF04393 Protein of unknown function (DUF535) V429_00930 PF01467 Cytidylyltransferase-like V429_00935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V429_00940 PF00535 Glycosyl transferase family 2 V429_00945 PF01075 Glycosyltransferase family 9 (heptosyltransferase) V429_00950 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) V429_00955 PF03611 PTS system sugar-specific permease component V429_00965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_00970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_00970 PF00356 Bacterial regulatory proteins, lacI family V429_00975 PF08240 Alcohol dehydrogenase GroES-like domain V429_00975 PF00107 Zinc-binding dehydrogenase V429_00995 PF03748 Flagellar basal body-associated protein FliL V429_01000 PF04345 Chorismate lyase V429_01005 PF01040 UbiA prenyltransferase family V429_01010 PF01553 Acyltransferase V429_01015 PF01726 LexA DNA binding domain V429_01015 PF00717 Peptidase S24-like V429_01025 PF02630 SCO1/SenC V429_01030 PF01554 MatE V429_01035 PF00588 SpoU rRNA Methylase family V429_01040 PF00512 His Kinase A (phospho-acceptor) domain V429_01040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_01040 PF00672 HAMP domain V429_01040 PF16527 Two-component sensor protein CpxA, periplasmic domain V429_01045 PF00072 Response regulator receiver domain V429_01045 PF00486 Transcriptional regulatory protein, C terminal V429_01050 PF01545 Cation efflux family V429_01050 PF16916 Dimerisation domain of Zinc Transporter V429_01055 PF00132 Bacterial transferase hexapeptide (six repeats) V429_01055 PF06426 Serine acetyltransferase, N-terminal V429_01065 PF06005 Cell division protein ZapB V429_01075 PF01612 3'-5' exonuclease V429_01075 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V429_01075 PF01367 5'-3' exonuclease, C-terminal SAM fold V429_01075 PF00476 DNA polymerase family A V429_01080 PF00132 Bacterial transferase hexapeptide (six repeats) V429_01120 PF00356 Bacterial regulatory proteins, lacI family V429_01125 PF02929 Beta galactosidase small chain V429_01125 PF00703 Glycosyl hydrolases family 2 V429_01125 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V429_01125 PF16353 Domain of unknown function(DUF4981) V429_01125 PF02837 Glycosyl hydrolases family 2, sugar binding domain V429_01130 PF04074 YhcH/YjgK/YiaL V429_01135 PF13520 Amino acid permease V429_01140 PF01588 Putative tRNA binding domain V429_01145 PF13520 Amino acid permease V429_01150 PF13593 SBF-like CPA transporter family (DUF4137) V429_01155 PF12867 DinB superfamily V429_01155 PF03781 Sulfatase-modifying factor enzyme 1 V429_01165 PF00756 Putative esterase V429_01170 PF08240 Alcohol dehydrogenase GroES-like domain V429_01170 PF00107 Zinc-binding dehydrogenase V429_01175 PF03466 LysR substrate binding domain V429_01175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_01205 PF13361 UvrD-like helicase C-terminal domain V429_01205 PF00580 UvrD/REP helicase N-terminal domain V429_01220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_01220 PF03466 LysR substrate binding domain V429_01230 PF14001 YdfZ protein V429_01255 PF06206 CpeT/CpcT family (DUF1001) V429_01265 PF01810 LysE type translocator V429_01270 PF04143 Sulphur transport V429_01275 PF00689 Cation transporting ATPase, C-terminus V429_01275 PF00690 Cation transporter/ATPase, N-terminus V429_01280 PF01810 LysE type translocator V429_01285 PF12833 Helix-turn-helix domain V429_01290 PF00892 EamA-like transporter family V429_01300 PF00171 Aldehyde dehydrogenase family V429_01305 PF01381 Helix-turn-helix V429_01305 PF07883 Cupin domain V429_01310 PF00202 Aminotransferase class-III V429_01320 PF02540 NAD synthase V429_01320 PF00117 Glutamine amidotransferase class-I V429_01320 PF00958 GMP synthase C terminal domain V429_01325 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V429_01325 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V429_01330 PF00294 pfkB family carbohydrate kinase V429_01335 PF02082 Transcriptional regulator V429_01355 PF02386 Cation transport protein V429_01360 PF02254 TrkA-N domain V429_01360 PF02080 TrkA-C domain V429_01365 PF01029 NusB family V429_01365 PF01189 16S rRNA methyltransferase RsmB/F V429_01370 PF02911 Formyl transferase, C-terminal domain V429_01370 PF00551 Formyl transferase V429_01375 PF01327 Polypeptide deformylase V429_01385 PF02481 DNA recombination-mediator protein A V429_01385 PF17782 DprA winged helix domain V429_01390 PF04361 Protein of unknown function (DUF494) V429_01395 PF01396 Topoisomerase DNA binding C4 zinc finger V429_01400 PF00731 AIR carboxylase V429_01405 PF01300 Telomere recombination V429_01410 PF01218 Coproporphyrinogen III oxidase V429_01415 PF18317 Shikimate 5'-dehydrogenase C-terminal domain V429_01415 PF01488 Shikimate / quinate 5-dehydrogenase V429_01415 PF08501 Shikimate dehydrogenase substrate binding domain V429_01420 PF07369 Protein of unknown function (DUF1488) V429_01425 PF01926 50S ribosome-binding GTPase V429_01430 PF00034 Cytochrome c V429_01440 PF04220 Der GTPase activator (YihI) V429_01445 PF10675 Protein of unknown function (DUF2489) V429_01450 PF04055 Radical SAM superfamily V429_01450 PF06969 HemN C-terminal domain V429_01455 PF00962 Adenosine/AMP deaminase V429_01460 PF00158 Sigma-54 interaction domain V429_01460 PF02954 Bacterial regulatory protein, Fis family V429_01460 PF00072 Response regulator receiver domain V429_01465 PF00989 PAS fold V429_01465 PF00512 His Kinase A (phospho-acceptor) domain V429_01465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_01475 PF00120 Glutamine synthetase, catalytic domain V429_01475 PF03951 Glutamine synthetase, beta-Grasp domain V429_01485 PF03631 Virulence factor BrkB V429_01490 PF02580 D-Tyr-tRNA(Tyr) deacylase V429_01500 PF00583 Acetyltransferase (GNAT) family V429_01500 PF09500 Putative thioesterase (yiiD_Cterm) V429_01510 PF00271 Helicase conserved C-terminal domain V429_01510 PF17191 RecG wedge domain V429_01510 PF00270 DEAD/DEAH box helicase V429_01515 PF13091 PLD-like domain V429_01520 PF02447 GntP family permease V429_01525 PF01202 Shikimate kinase V429_01530 PF00920 Dehydratase family V429_01535 PF01081 KDPG and KHG aldolase V429_01540 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_01540 PF00356 Bacterial regulatory proteins, lacI family V429_01550 PF01551 Peptidase family M23 V429_01555 PF01676 Metalloenzyme superfamily V429_01555 PF06415 BPG-independent PGAM N-terminus (iPGM_N) V429_01560 PF00581 Rhodanese-like domain V429_01565 PF02556 Preprotein translocase subunit SecB V429_01570 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus V429_01570 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus V429_01575 PF01106 NifU-like domain V429_01575 PF01521 Iron-sulphur cluster biosynthesis V429_01580 PF00156 Phosphoribosyl transferase domain V429_01585 PF00561 alpha/beta hydrolase fold V429_01605 PF17674 HHH domain V429_01605 PF00575 S1 RNA binding domain V429_01605 PF16921 Tex protein YqgF-like domain V429_01605 PF09371 Tex-like protein N-terminal domain V429_01610 PF01272 Transcription elongation factor, GreA/GreB, C-term V429_01610 PF03449 Transcription elongation factor, N-terminal V429_01615 PF00072 Response regulator receiver domain V429_01615 PF00486 Transcriptional regulatory protein, C terminal V429_01620 PF00512 His Kinase A (phospho-acceptor) domain V429_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_01620 PF00672 HAMP domain V429_01630 PF00338 Ribosomal protein S10p/S20e V429_01635 PF00297 Ribosomal protein L3 V429_01640 PF00573 Ribosomal protein L4/L1 family V429_01645 PF00276 Ribosomal protein L23 V429_01650 PF03947 Ribosomal Proteins L2, C-terminal domain V429_01650 PF00181 Ribosomal Proteins L2, RNA binding domain V429_01655 PF00203 Ribosomal protein S19 V429_01660 PF00237 Ribosomal protein L22p/L17e V429_01665 PF00189 Ribosomal protein S3, C-terminal domain V429_01665 PF07650 KH domain V429_01670 PF00252 Ribosomal protein L16p/L10e V429_01675 PF00831 Ribosomal L29 protein V429_01680 PF00366 Ribosomal protein S17 V429_01685 PF00238 Ribosomal protein L14p/L23e V429_01690 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 V429_01690 PF00467 KOW motif V429_01695 PF00673 ribosomal L5P family C-terminus V429_01695 PF00281 Ribosomal protein L5 V429_01700 PF00253 Ribosomal protein S14p/S29e V429_01705 PF00410 Ribosomal protein S8 V429_01710 PF00347 Ribosomal protein L6 V429_01715 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast V429_01720 PF03719 Ribosomal protein S5, C-terminal domain V429_01720 PF00333 Ribosomal protein S5, N-terminal domain V429_01725 PF00327 Ribosomal protein L30p/L7e V429_01730 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A V429_01735 PF00344 SecY translocase V429_01740 PF00416 Ribosomal protein S13/S18 V429_01745 PF00411 Ribosomal protein S11 V429_01750 PF00163 Ribosomal protein S4/S9 N-terminal domain V429_01750 PF01479 S4 domain V429_01755 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain V429_01755 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain V429_01755 PF01000 RNA polymerase Rpb3/RpoA insert domain V429_01760 PF01196 Ribosomal protein L17 V429_01810 PF02254 TrkA-N domain V429_01810 PF00999 Sodium/hydrogen exchanger family V429_01815 PF02525 Flavodoxin-like fold V429_01820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_01820 PF03466 LysR substrate binding domain V429_01825 PF00106 short chain dehydrogenase V429_01840 PF00326 Prolyl oligopeptidase family V429_01840 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V429_01865 PF07947 YhhN family V429_01870 PF07690 Major Facilitator Superfamily V429_01875 PF13533 Biotin-lipoyl like V429_01880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_01880 PF03466 LysR substrate binding domain V429_01890 PF00375 Sodium:dicarboxylate symporter family V429_01895 PF10678 Protein of unknown function (DUF2492) V429_01900 PF01914 MarC family integral membrane protein V429_01905 PF03466 LysR substrate binding domain V429_01905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_01910 PF02416 mttA/Hcf106 family V429_01920 PF01464 Transglycosylase SLT domain V429_01930 PF13091 PLD-like domain V429_01940 PF00440 Bacterial regulatory proteins, tetR family V429_01965 PF00005 ABC transporter V429_01970 PF18075 FtsX extracellular domain V429_01975 PF04542 Sigma-70 region 2 V429_01975 PF00140 Sigma-70 factor, region 1.2 V429_01975 PF04545 Sigma-70, region 4 V429_01985 PF00484 Carbonic anhydrase V429_01990 PF00392 Bacterial regulatory proteins, gntR family V429_01990 PF07702 UTRA domain V429_01995 PF01979 Amidohydrolase family V429_02000 PF00491 Arginase family V429_02005 PF17391 Urocanase N-terminal domain V429_02005 PF17392 Urocanase C-terminal domain V429_02005 PF01175 Urocanase Rossmann-like domain V429_02010 PF00221 Aromatic amino acid lyase V429_02015 PF01699 Sodium/calcium exchanger protein V429_02020 PF00563 EAL domain V429_02020 PF12792 CSS motif domain associated with EAL V429_02025 PF17157 Gammaproteobacterial periplasmic sensor domain V429_02025 PF00990 Diguanylate cyclase, GGDEF domain V429_02025 PF00563 EAL domain V429_02055 PF03958 Bacterial type II/III secretion system short domain V429_02055 PF00263 Bacterial type II and III secretion system protein V429_02060 PF09077 Mu B transposition protein, C terminal V429_02060 PF13401 AAA domain V429_02070 PF00437 Type II/IV secretion system protein V429_02070 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V429_02075 PF00482 Type II secretion system (T2SS), protein F V429_02090 PF00114 Pilin (bacterial filament) V429_02090 PF07963 Prokaryotic N-terminal methylation motif V429_02095 PF07963 Prokaryotic N-terminal methylation motif V429_02095 PF14245 Type IV pilin PilA V429_02125 PF04085 rod shape-determining protein MreC V429_02130 PF04093 rod shape-determining protein MreD V429_02135 PF02545 Maf-like protein V429_02140 PF10150 Ribonuclease E/G family V429_02140 PF00575 S1 RNA binding domain V429_02145 PF13502 AsmA-like C-terminal region V429_02145 PF13116 Protein of unknown function V429_02155 PF00795 Carbon-nitrogen hydrolase V429_02160 PF01523 Putative modulator of DNA gyrase V429_02165 PF01380 SIS domain V429_02165 PF01418 Helix-turn-helix domain, rpiR family V429_02180 PF00367 phosphotransferase system, EIIB V429_02180 PF02378 Phosphotransferase system, EIIC V429_02185 PF13580 SIS domain V429_02195 PF01914 MarC family integral membrane protein V429_02200 PF07690 Major Facilitator Superfamily V429_02210 PF00072 Response regulator receiver domain V429_02215 PF00072 Response regulator receiver domain V429_02215 PF00672 HAMP domain V429_02215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_02215 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V429_02215 PF00512 His Kinase A (phospho-acceptor) domain V429_02215 PF01627 Hpt domain V429_02220 PF13581 Histidine kinase-like ATPase domain V429_02225 PF01740 STAS domain V429_02225 PF08678 Rsbr N terminal V429_02230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_02230 PF08447 PAS fold V429_02230 PF13426 PAS domain V429_02245 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) V429_02250 PF04228 Putative neutral zinc metallopeptidase V429_02260 PF08668 HDOD domain V429_02290 PF00419 Fimbrial protein V429_02310 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V429_02310 PF02753 Pili assembly chaperone PapD, C-terminal domain V429_02315 PF00577 Outer membrane usher protein V429_02315 PF13953 PapC C-terminal domain V429_02315 PF13954 PapC N-terminal domain V429_02320 PF00691 OmpA family V429_02320 PF01389 OmpA-like transmembrane domain V429_02325 PF00419 Fimbrial protein V429_02330 PF04320 Protein with unknown function (DUF469) V429_02365 PF00999 Sodium/hydrogen exchanger family V429_02370 PF02310 B12 binding domain V429_02370 PF02574 Homocysteine S-methyltransferase V429_02370 PF02965 Vitamin B12 dependent methionine synthase, activation domain V429_02370 PF00809 Pterin binding enzyme V429_02370 PF02607 B12 binding domain V429_02375 PF08443 RimK-like ATP-grasp domain V429_02375 PF18030 RimK PreATP-grasp domain V429_02380 PF05525 Branched-chain amino acid transport protein V429_02390 PF00486 Transcriptional regulatory protein, C terminal V429_02390 PF00072 Response regulator receiver domain V429_02405 PF03440 Aerolysin/Pertussis toxin (APT) domain V429_02405 PF01117 Aerolysin toxin V429_02410 PF01964 Radical SAM ThiC family V429_02410 PF13667 ThiC-associated domain V429_02415 PF02581 Thiamine monophosphate synthase V429_02420 PF00899 ThiF family V429_02430 PF05690 Thiazole biosynthesis protein ThiG V429_02435 PF06968 Biotin and Thiamin Synthesis associated domain V429_02435 PF04055 Radical SAM superfamily V429_02450 PF13036 Peptidoglycan-synthase activator LpoB V429_02465 PF00990 Diguanylate cyclase, GGDEF domain V429_02465 PF17151 Periplasmic sensor domain V429_02475 PF06055 Exopolysaccharide synthesis, ExoD V429_02490 PF08803 Putative mono-oxygenase ydhR V429_02495 PF01638 HxlR-like helix-turn-helix V429_02520 PF07715 TonB-dependent Receptor Plug Domain V429_02520 PF00593 TonB dependent receptor V429_02535 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded V429_02540 PF03692 Putative zinc- or iron-chelating domain V429_02550 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase V429_02555 PF02602 Uroporphyrinogen-III synthase HemD V429_02560 PF03900 Porphobilinogen deaminase, C-terminal domain V429_02560 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain V429_02565 PF12633 Adenylate cyclase NT domain V429_02565 PF01295 Adenylate cyclase, class-I V429_02570 PF02230 Phospholipase/Carboxylesterase V429_02575 PF01491 Frataxin-like domain V429_02580 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V429_02580 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V429_02585 PF01678 Diaminopimelate epimerase V429_02595 PF00589 Phage integrase family V429_02595 PF02899 Phage integrase, N-terminal SAM-like domain V429_02600 PF13419 Haloacid dehalogenase-like hydrolase V429_02610 PF13545 Crp-like helix-turn-helix domain V429_02610 PF00027 Cyclic nucleotide-binding domain V429_02620 PF07722 Peptidase C26 V429_02640 PF00005 ABC transporter V429_02655 PF02464 Competence-damaged protein V429_02655 PF00994 Probable molybdopterin binding domain V429_02660 PF01966 HD domain V429_02660 PF00013 KH domain V429_02660 PF12072 Domain of unknown function (DUF3552) V429_02665 PF04204 Homoserine O-succinyltransferase V429_02675 PF01037 Lrp/AsnC ligand binding domain V429_02680 PF00884 Sulfatase V429_02695 PF16657 Maltogenic Amylase, C-terminal domain V429_02695 PF02903 Alpha amylase, N-terminal ig-like domain V429_02695 PF00128 Alpha amylase, catalytic domain V429_02700 PF02308 MgtC family V429_02720 PF00106 short chain dehydrogenase V429_02725 PF03577 Peptidase family C69 V429_02740 PF00465 Iron-containing alcohol dehydrogenase V429_02750 PF01053 Cys/Met metabolism PLP-dependent enzyme V429_02760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_02760 PF12793 Sugar transport-related sRNA regulator N-term V429_02775 PF03280 Proteobacterial lipase chaperone protein V429_02780 PF00561 alpha/beta hydrolase fold V429_02790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V429_02790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V429_02795 PF02698 DUF218 domain V429_02800 PF01752 Collagenase V429_02800 PF08453 Peptidase family M9 N-terminal V429_02810 PF00419 Fimbrial protein V429_02820 PF00577 Outer membrane usher protein V429_02820 PF13953 PapC C-terminal domain V429_02820 PF13954 PapC N-terminal domain V429_02825 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain V429_02825 PF02753 Pili assembly chaperone PapD, C-terminal domain V429_02830 PF00419 Fimbrial protein V429_02835 PF00419 Fimbrial protein V429_02845 PF00501 AMP-binding enzyme V429_02850 PF13378 Enolase C-terminal domain-like V429_02855 PF00378 Enoyl-CoA hydratase/isomerase V429_02860 PF12697 Alpha/beta hydrolase family V429_02865 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V429_02865 PF16582 Middle domain of thiamine pyrophosphate V429_02865 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_02870 PF00425 chorismate binding enzyme V429_02875 PF01040 UbiA prenyltransferase family V429_02900 PF00270 DEAD/DEAH box helicase V429_02900 PF03880 DbpA RNA binding domain V429_02900 PF00271 Helicase conserved C-terminal domain V429_02905 PF01773 Na+ dependent nucleoside transporter N-terminus V429_02905 PF07662 Na+ dependent nucleoside transporter C-terminus V429_02905 PF07670 Nucleoside recognition V429_02910 PF04307 LexA-binding, inner membrane-associated putative hydrolase V429_02925 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 V429_02930 PF01544 CorA-like Mg2+ transporter protein V429_02950 PF00999 Sodium/hydrogen exchanger family V429_02950 PF02080 TrkA-C domain V429_02950 PF03471 Transporter associated domain V429_02955 PF05068 Mannitol repressor V429_02960 PF08125 Mannitol dehydrogenase C-terminal domain V429_02960 PF01232 Mannitol dehydrogenase Rossmann domain V429_02965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V429_02965 PF02378 Phosphotransferase system, EIIC V429_02965 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_02980 PF00440 Bacterial regulatory proteins, tetR family V429_02985 PF17876 Cold shock domain V429_02985 PF08206 Ribonuclease B OB domain V429_02985 PF00773 RNB domain V429_02990 PF03466 LysR substrate binding domain V429_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_02995 PF00765 Autoinducer synthase V429_03000 PF03472 Autoinducer binding domain V429_03000 PF00196 Bacterial regulatory proteins, luxR family V429_03005 PF01810 LysE type translocator V429_03010 PF02872 5'-nucleotidase, C-terminal domain V429_03010 PF00149 Calcineurin-like phosphoesterase V429_03015 PF05433 Glycine zipper 2TM domain V429_03020 PF00583 Acetyltransferase (GNAT) family V429_03025 PF11756 Nitrous oxide-stimulated promoter V429_03030 PF00557 Metallopeptidase family M24 V429_03030 PF01321 Creatinase/Prolidase N-terminal domain V429_03035 PF00392 Bacterial regulatory proteins, gntR family V429_03045 PF01430 Hsp33 protein V429_03050 PF01479 S4 domain V429_03055 PF11356 Type II secretion system protein C V429_03060 PF00263 Bacterial type II and III secretion system protein V429_03060 PF03958 Bacterial type II/III secretion system short domain V429_03065 PF00437 Type II/IV secretion system protein V429_03070 PF00482 Type II secretion system (T2SS), protein F V429_03075 PF08334 Type II secretion system (T2SS), protein G V429_03075 PF07963 Prokaryotic N-terminal methylation motif V429_03085 PF12019 Type II transport protein GspH V429_03085 PF07963 Prokaryotic N-terminal methylation motif V429_03090 PF02501 Type II secretion system (T2SS), protein I V429_03090 PF07963 Prokaryotic N-terminal methylation motif V429_03095 PF07963 Prokaryotic N-terminal methylation motif V429_03095 PF11612 Type II secretion system (T2SS), protein J V429_03100 PF03934 Type II secretion system (T2SS), protein K V429_03105 PF12693 GspL periplasmic domain V429_03105 PF05134 Type II secretion system (T2SS), protein L V429_03110 PF04612 Type II secretion system (T2SS), protein M V429_03115 PF01203 Type II secretion system (T2SS), protein N V429_03120 PF00196 Bacterial regulatory proteins, luxR family V429_03125 PF01479 S4 domain V429_03125 PF00579 tRNA synthetases class I (W and Y) V429_03130 PF13419 Haloacid dehalogenase-like hydrolase V429_03135 PF00293 NUDIX domain V429_03140 PF00459 Inositol monophosphatase family V429_03145 PF03222 Tryptophan/tyrosine permease family V429_03150 PF01588 Putative tRNA binding domain V429_03155 PF06445 GyrI-like small molecule binding domain V429_03155 PF12833 Helix-turn-helix domain V429_03160 PF01340 Met Apo-repressor, MetJ V429_03165 PF01053 Cys/Met metabolism PLP-dependent enzyme V429_03170 PF03447 Homoserine dehydrogenase, NAD binding domain V429_03170 PF00742 Homoserine dehydrogenase V429_03170 PF00696 Amino acid kinase family V429_03180 PF00311 Phosphoenolpyruvate carboxylase V429_03185 PF07687 Peptidase dimerisation domain V429_03185 PF01546 Peptidase family M20/M25/M40 V429_03190 PF02774 Semialdehyde dehydrogenase, dimerisation domain V429_03190 PF01118 Semialdehyde dehydrogenase, NAD binding domain V429_03195 PF00696 Amino acid kinase family V429_03200 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V429_03200 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V429_03205 PF00764 Arginosuccinate synthase V429_03210 PF14698 Argininosuccinate lyase C-terminal V429_03210 PF00206 Lyase V429_03235 PF12464 Maltose acetyltransferase V429_03235 PF14602 Hexapeptide repeat of succinyl-transferase V429_03240 PF13194 Domain of unknown function (DUF4010) V429_03255 PF00528 Binding-protein-dependent transport system inner membrane component V429_03260 PF00528 Binding-protein-dependent transport system inner membrane component V429_03265 PF12857 TOBE-like domain V429_03265 PF00005 ABC transporter V429_03275 PF03466 LysR substrate binding domain V429_03275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03280 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V429_03280 PF18416 N-acetylglucosamine binding protein domain 2 V429_03285 PF00672 HAMP domain V429_03285 PF12729 Four helix bundle sensory module for signal transduction V429_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_03315 PF14684 Tricorn protease C1 domain V429_03315 PF07676 WD40-like Beta Propeller Repeat V429_03315 PF03572 Peptidase family S41 V429_03315 PF14685 Tricorn protease PDZ domain V429_03335 PF11230 Protein of unknown function (DUF3029) V429_03340 PF04055 Radical SAM superfamily V429_03350 PF03466 LysR substrate binding domain V429_03350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03355 PF00155 Aminotransferase class I and II V429_03360 PF02583 Metal-sensitive transcriptional repressor V429_03375 PF03714 Bacterial pullanase-associated domain V429_03375 PF18494 Pullulanase Ins domain V429_03375 PF17967 Pullulanase N2 domain V429_03375 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V429_03375 PF11852 Domain of unknown function (DUF3372) V429_03380 PF00403 Heavy-metal-associated domain V429_03385 PF08534 Redoxin V429_03395 PF00271 Helicase conserved C-terminal domain V429_03395 PF00270 DEAD/DEAH box helicase V429_03410 PF03372 Endonuclease/Exonuclease/phosphatase family V429_03415 PF08447 PAS fold V429_03415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_03430 PF06062 Uncharacterised protein family (UPF0231) V429_03440 PF17853 GGDEF-like domain V429_03440 PF13556 PucR C-terminal helix-turn-helix domain V429_03440 PF05651 Putative sugar diacid recognition V429_03445 PF02447 GntP family permease V429_03450 PF02595 Glycerate kinase family V429_03460 PF00255 Glutathione peroxidase V429_03465 PF03466 LysR substrate binding domain V429_03465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03470 PF07662 Na+ dependent nucleoside transporter C-terminus V429_03470 PF07670 Nucleoside recognition V429_03470 PF01773 Na+ dependent nucleoside transporter N-terminus V429_03475 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V429_03475 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V429_03480 PF00472 RF-1 domain V429_03485 PF00543 Nitrogen regulatory protein P-II V429_03490 PF13416 Bacterial extracellular solute-binding protein V429_03500 PF08402 TOBE domain V429_03500 PF00005 ABC transporter V429_03505 PF04261 Dyp-type peroxidase family V429_03510 PF01316 Arginine repressor, DNA binding domain V429_03510 PF02863 Arginine repressor, C-terminal domain V429_03515 PF00005 ABC transporter V429_03520 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_03525 PF00528 Binding-protein-dependent transport system inner membrane component V429_03530 PF00528 Binding-protein-dependent transport system inner membrane component V429_03535 PF00056 lactate/malate dehydrogenase, NAD binding domain V429_03535 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain V429_03540 PF08238 Sel1 repeat V429_03545 PF00175 Oxidoreductase NAD-binding domain V429_03545 PF00042 Globin V429_03545 PF00970 Oxidoreductase FAD-binding domain V429_03550 PF02082 Transcriptional regulator V429_03555 PF03471 Transporter associated domain V429_03555 PF00571 CBS domain V429_03555 PF01595 Cyclin M transmembrane N-terminal domain V429_03560 PF01578 Cytochrome C assembly protein V429_03565 PF00448 SRP54-type protein, GTPase domain V429_03565 PF02978 Signal peptide binding domain V429_03565 PF02881 SRP54-type protein, helical bundle domain V429_03570 PF00886 Ribosomal protein S16 V429_03575 PF01782 RimM N-terminal domain V429_03575 PF05239 PRC-barrel domain V429_03580 PF01746 tRNA (Guanine-1)-methyltransferase V429_03585 PF01245 Ribosomal protein L19 V429_03595 PF02976 DNA mismatch repair enzyme MutH V429_03600 PF00293 NUDIX domain V429_03605 PF02896 PEP-utilising enzyme, TIM barrel domain V429_03605 PF00391 PEP-utilising enzyme, mobile domain V429_03605 PF01590 GAF domain V429_03605 PF05524 PEP-utilising enzyme, N-terminal V429_03610 PF01790 Prolipoprotein diacylglyceryl transferase V429_03615 PF00303 Thymidylate synthase V429_03620 PF06965 Na+/H+ antiporter 1 V429_03630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03630 PF03466 LysR substrate binding domain V429_03635 PF01022 Bacterial regulatory protein, arsR family V429_03640 PF01649 Ribosomal protein S20 V429_03645 PF03023 Lipid II flippase MurJ V429_03650 PF01687 Riboflavin kinase V429_03650 PF06574 FAD synthetase V429_03655 PF00133 tRNA synthetases class I (I, L, M and V) V429_03655 PF06827 Zinc finger found in FPG and IleRS V429_03655 PF08264 Anticodon-binding domain of tRNA V429_03660 PF01252 Signal peptidase (SPase) II V429_03665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_03670 PF02401 LytB protein V429_03695 PF05567 Neisseria PilC beta-propeller domain V429_03730 PF02540 NAD synthase V429_03730 PF00795 Carbon-nitrogen hydrolase V429_03735 PF00543 Nitrogen regulatory protein P-II V429_03745 PF02664 S-Ribosylhomocysteinase (LuxS) V429_03750 PF00990 Diguanylate cyclase, GGDEF domain V429_03755 PF17876 Cold shock domain V429_03755 PF08461 Ribonuclease R winged-helix domain V429_03755 PF08206 Ribonuclease B OB domain V429_03755 PF00773 RNB domain V429_03755 PF00575 S1 RNA binding domain V429_03760 PF08032 RNA 2'-O ribose methyltransferase substrate binding V429_03760 PF00588 SpoU rRNA Methylase family V429_03770 PF13673 Acetyltransferase (GNAT) domain V429_03790 PF01566 Natural resistance-associated macrophage protein V429_03795 PF01250 Ribosomal protein S6 V429_03800 PF01084 Ribosomal protein S18 V429_03805 PF03948 Ribosomal protein L9, C-terminal domain V429_03805 PF01281 Ribosomal protein L9, N-terminal domain V429_03810 PF00970 Oxidoreductase FAD-binding domain V429_03810 PF00175 Oxidoreductase NAD-binding domain V429_03830 PF08990 Erythronolide synthase docking V429_03830 PF14765 Polyketide synthase dehydratase V429_03830 PF08659 KR domain V429_03830 PF02801 Beta-ketoacyl synthase, C-terminal domain V429_03830 PF00550 Phosphopantetheine attachment site V429_03830 PF16197 Ketoacyl-synthetase C-terminal extension V429_03830 PF08240 Alcohol dehydrogenase GroES-like domain V429_03830 PF00109 Beta-ketoacyl synthase, N-terminal domain V429_03830 PF00698 Acyl transferase domain V429_03835 PF09335 SNARE associated Golgi protein V429_03840 PF00675 Insulinase (Peptidase family M16) V429_03840 PF05193 Peptidase M16 inactive domain V429_03845 PF04262 Glutamate-cysteine ligase V429_03855 PF00501 AMP-binding enzyme V429_03865 PF00583 Acetyltransferase (GNAT) family V429_03875 PF07728 AAA domain (dynein-related subfamily) V429_03875 PF17868 AAA lid domain V429_03875 PF12592 Protein of unknown function (DUF3763) V429_03880 PF05762 VWA domain containing CoxE-like protein V429_03885 PF13426 PAS domain V429_03885 PF00563 EAL domain V429_03885 PF00990 Diguanylate cyclase, GGDEF domain V429_03890 PF00990 Diguanylate cyclase, GGDEF domain V429_03890 PF00072 Response regulator receiver domain V429_03895 PF16658 Class II release factor RF3, C-terminal domain V429_03895 PF00009 Elongation factor Tu GTP binding domain V429_03895 PF03144 Elongation factor Tu domain 2 V429_03915 PF00583 Acetyltransferase (GNAT) family V429_03920 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V429_03930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03930 PF03466 LysR substrate binding domain V429_03935 PF04371 Porphyromonas-type peptidyl-arginine deiminase V429_03940 PF01425 Amidase V429_03960 PF00753 Metallo-beta-lactamase superfamily V429_03970 PF00270 DEAD/DEAH box helicase V429_03970 PF00271 Helicase conserved C-terminal domain V429_03975 PF03466 LysR substrate binding domain V429_03975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_03990 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase V429_03995 PF03150 Di-haem cytochrome c peroxidase V429_03995 PF00034 Cytochrome c V429_04010 PF00445 Ribonuclease T2 family V429_04020 PF03060 Nitronate monooxygenase V429_04050 PF00293 NUDIX domain V429_04050 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain V429_04050 PF09297 NADH pyrophosphatase zinc ribbon domain V429_04055 PF00512 His Kinase A (phospho-acceptor) domain V429_04055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_04055 PF16527 Two-component sensor protein CpxA, periplasmic domain V429_04055 PF00672 HAMP domain V429_04060 PF00486 Transcriptional regulatory protein, C terminal V429_04060 PF00072 Response regulator receiver domain V429_04065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_04070 PF12704 MacB-like periplasmic core domain V429_04070 PF02687 FtsX-like permease family V429_04070 PF00005 ABC transporter V429_04075 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_04080 PF00005 ABC transporter V429_04085 PF00528 Binding-protein-dependent transport system inner membrane component V429_04090 PF00528 Binding-protein-dependent transport system inner membrane component V429_04095 PF00291 Pyridoxal-phosphate dependent enzyme V429_04100 PF00326 Prolyl oligopeptidase family V429_04100 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V429_04120 PF03710 Glutamate-ammonia ligase adenylyltransferase V429_04120 PF08335 GlnD PII-uridylyltransferase V429_04130 PF02743 Cache domain V429_04130 PF00672 HAMP domain V429_04130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_04135 PF00027 Cyclic nucleotide-binding domain V429_04135 PF00520 Ion transport protein V429_04140 PF08239 Bacterial SH3 domain V429_04145 PF18327 Proline utilization A proline dehydrogenase N-terminal domain V429_04145 PF14850 DNA-binding domain of Proline dehydrogenase V429_04145 PF01619 Proline dehydrogenase V429_04145 PF00171 Aldehyde dehydrogenase family V429_04150 PF00293 NUDIX domain V429_04150 PF09297 NADH pyrophosphatase zinc ribbon domain V429_04155 PF01208 Uroporphyrinogen decarboxylase (URO-D) V429_04160 PF00480 ROK family V429_04165 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V429_04165 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V429_04170 PF00162 Phosphoglycerate kinase V429_04175 PF01116 Fructose-bisphosphate aldolase class-II V429_04180 PF01266 FAD dependent oxidoreductase V429_04190 PF11412 Disulphide bond corrector protein DsbC V429_04190 PF02683 Cytochrome C biogenesis protein transmembrane region V429_04195 PF03091 CutA1 divalent ion tolerance protein V429_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_04210 PF03466 LysR substrate binding domain V429_04215 PF01571 Aminomethyltransferase folate-binding domain V429_04220 PF03937 Flavinator of succinate dehydrogenase V429_04230 PF00890 FAD binding domain V429_04230 PF02910 Fumarate reductase flavoprotein C-term V429_04235 PF08281 Sigma-70, region 4 V429_04235 PF04542 Sigma-70 region 2 V429_04240 PF03872 Anti sigma-E protein RseA, N-terminal domain V429_04240 PF03873 Anti sigma-E protein RseA, C-terminal domain V429_04245 PF17188 MucB/RseB C-terminal domain V429_04245 PF03888 MucB/RseB N-terminal domain V429_04255 PF00009 Elongation factor Tu GTP binding domain V429_04255 PF00679 Elongation factor G C-terminus V429_04255 PF06421 GTP-binding protein LepA C-terminus V429_04255 PF03144 Elongation factor Tu domain 2 V429_04260 PF10502 Signal peptidase, peptidase S26 V429_04265 PF14622 Ribonuclease-III-like V429_04265 PF00035 Double-stranded RNA binding motif V429_04270 PF07650 KH domain V429_04270 PF01926 50S ribosome-binding GTPase V429_04275 PF02565 Recombination protein O C terminal V429_04275 PF11967 Recombination protein O N terminal V429_04280 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ V429_04290 PF01116 Fructose-bisphosphate aldolase class-II V429_04295 PF01979 Amidohydrolase family V429_04300 PF03610 PTS system fructose IIA component V429_04305 PF03613 PTS system mannose/fructose/sorbose family IID component V429_04310 PF03609 PTS system sorbose-specific iic component V429_04315 PF03830 PTS system sorbose subfamily IIB component V429_04320 PF01380 SIS domain V429_04325 PF08013 Tagatose 6 phosphate kinase V429_04330 PF00455 DeoR C terminal sensor domain V429_04330 PF08220 DeoR-like helix-turn-helix domain V429_04335 PF01510 N-acetylmuramoyl-L-alanine amidase V429_04340 PF07308 Protein of unknown function (DUF1456) V429_04345 PF00672 HAMP domain V429_04345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V429_04345 PF00072 Response regulator receiver domain V429_04345 PF01627 Hpt domain V429_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_04345 PF00512 His Kinase A (phospho-acceptor) domain V429_04350 PF01938 TRAM domain V429_04350 PF05958 tRNA (Uracil-5-)-methyltransferase V429_04355 PF02824 TGS domain V429_04355 PF13291 ACT domain V429_04355 PF04607 Region found in RelA / SpoT proteins V429_04360 PF03819 MazG nucleotide pyrophosphohydrolase domain V429_04365 PF06418 CTP synthase N-terminus V429_04365 PF00117 Glutamine amidotransferase class-I V429_04370 PF00113 Enolase, C-terminal TIM barrel domain V429_04370 PF03952 Enolase, N-terminal domain V429_04375 PF04977 Septum formation initiator V429_04380 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase V429_04385 PF02542 YgbB family V429_04390 PF01142 tRNA pseudouridine synthase D (TruD) V429_04395 PF01975 Survival protein SurE V429_04405 PF09335 SNARE associated Golgi protein V429_04410 PF01476 LysM domain V429_04410 PF01551 Peptidase family M23 V429_04415 PF04545 Sigma-70, region 4 V429_04415 PF04539 Sigma-70 region 3 V429_04415 PF04542 Sigma-70 region 2 V429_04415 PF00140 Sigma-70 factor, region 1.2 V429_04420 PF00814 Glycoprotease family V429_04425 PF01165 Ribosomal protein S21 V429_04430 PF09424 Yqey-like protein V429_04435 PF08278 DNA primase DnaG DnaB-binding V429_04435 PF10410 DnaB-helicase binding domain of primase V429_04435 PF08275 DNA primase catalytic core, N-terminal domain V429_04435 PF01807 CHC2 zinc finger V429_04440 PF00140 Sigma-70 factor, region 1.2 V429_04440 PF03979 Sigma-70 factor, region 1.1 V429_04440 PF04546 Sigma-70, non-essential region V429_04440 PF04539 Sigma-70 region 3 V429_04440 PF04545 Sigma-70, region 4 V429_04440 PF04542 Sigma-70 region 2 V429_04455 PF00128 Alpha amylase, catalytic domain V429_04470 PF02844 Phosphoribosylglycinamide synthetase, N domain V429_04470 PF02843 Phosphoribosylglycinamide synthetase, C domain V429_04470 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain V429_04475 PF02142 MGS-like domain V429_04475 PF01808 AICARFT/IMPCHase bienzyme V429_04480 PF13411 MerR HTH family regulatory protein V429_04485 PF01872 RibD C-terminal domain V429_04490 PF03889 Alternative ribosome-rescue factor A V429_04495 PF06969 HemN C-terminal domain V429_04495 PF04055 Radical SAM superfamily V429_04500 PF01725 Ham1 family V429_04505 PF07690 Major Facilitator Superfamily V429_04510 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V429_04510 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V429_04520 PF13302 Acetyltransferase (GNAT) domain V429_04535 PF07504 Fungalysin/Thermolysin Propeptide Motif V429_04535 PF03413 Peptidase propeptide and YPEB domain V429_04535 PF01447 Thermolysin metallopeptidase, catalytic domain V429_04535 PF02868 Thermolysin metallopeptidase, alpha-helical domain V429_04535 PF04151 Bacterial pre-peptidase C-terminal domain V429_04540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_04540 PF03466 LysR substrate binding domain V429_04545 PF07690 Major Facilitator Superfamily V429_04550 PF00267 Gram-negative porin V429_04555 PF03605 Anaerobic c4-dicarboxylate membrane transporter V429_04560 PF00206 Lyase V429_04560 PF10415 Fumarase C C-terminus V429_04565 PF04186 FxsA cytoplasmic membrane protein V429_04570 PF01554 MatE V429_04575 PF00166 Chaperonin 10 Kd subunit V429_04580 PF00118 TCP-1/cpn60 chaperonin family V429_04590 PF03707 Bacterial signalling protein N terminal repeat V429_04590 PF00990 Diguanylate cyclase, GGDEF domain V429_04590 PF00563 EAL domain V429_04590 PF13188 PAS domain V429_04600 PF00849 RNA pseudouridylate synthase V429_04605 PF18337 RapA N-terminal Tudor like domain V429_04605 PF00271 Helicase conserved C-terminal domain V429_04605 PF12137 RNA polymerase recycling family C-terminal V429_04605 PF00176 SNF2 family N-terminal domain V429_04605 PF18339 RapA N-terminal Tudor like domain 1 V429_04635 PF02867 Ribonucleotide reductase, barrel domain V429_04635 PF08343 Ribonucleotide reductase N-terminal V429_04635 PF00317 Ribonucleotide reductase, all-alpha domain V429_04645 PF02562 PhoH-like protein V429_04645 PF13638 PIN domain V429_04650 PF00005 ABC transporter V429_04655 PF00528 Binding-protein-dependent transport system inner membrane component V429_04675 PF00694 Aconitase C-terminal domain V429_04680 PF00330 Aconitase family (aconitate hydratase) V429_04685 PF00180 Isocitrate/isopropylmalate dehydrogenase V429_04690 PF00682 HMGL-like V429_04690 PF08502 LeuA allosteric (dimerisation) domain V429_04700 PF01569 PAP2 superfamily V429_04715 PF00205 Thiamine pyrophosphate enzyme, central domain V429_04715 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_04715 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V429_04720 PF10369 Small subunit of acetolactate synthase V429_04725 PF01515 Phosphate acetyl/butaryl transferase V429_04725 PF07085 DRTGG domain V429_04730 PF00871 Acetokinase family V429_04735 PF04217 Protein of unknown function, DUF412 V429_04740 PF03887 YfbU domain V429_04745 PF00578 AhpC/TSA family V429_04750 PF01842 ACT domain V429_04755 PF00701 Dihydrodipicolinate synthetase family V429_04760 PF06804 NlpB/DapX lipoprotein V429_04765 PF01259 SAICAR synthetase V429_04775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_04775 PF03466 LysR substrate binding domain V429_04780 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) V429_04800 PF00072 Response regulator receiver domain V429_04800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_04800 PF00989 PAS fold V429_04800 PF01627 Hpt domain V429_04800 PF18415 Histidine kinase receptor ArcB trans-membrane domain V429_04800 PF00512 His Kinase A (phospho-acceptor) domain V429_04805 PF13286 Phosphohydrolase-associated domain V429_04805 PF01966 HD domain V429_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_04815 PF00512 His Kinase A (phospho-acceptor) domain V429_04815 PF09456 RcsC Alpha-Beta-Loop (ABL) V429_04815 PF00072 Response regulator receiver domain V429_04820 PF00990 Diguanylate cyclase, GGDEF domain V429_04820 PF00563 EAL domain V429_04820 PF03707 Bacterial signalling protein N terminal repeat V429_04825 PF12729 Four helix bundle sensory module for signal transduction V429_04825 PF00672 HAMP domain V429_04825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_04830 PF02357 Transcription termination factor nusG V429_04835 PF03180 NLPA lipoprotein V429_04840 PF00528 Binding-protein-dependent transport system inner membrane component V429_04845 PF00005 ABC transporter V429_04845 PF09383 NIL domain V429_04855 PF00480 ROK family V429_04860 PF08331 Domain of unknown function (DUF1730) V429_04865 PF03853 YjeF-related protein N-terminus V429_04865 PF01256 Carbohydrate kinase V429_04870 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE V429_04875 PF01520 N-acetylmuramoyl-L-alanine amidase V429_04885 PF08676 MutL C terminal dimerisation domain V429_04885 PF01119 DNA mismatch repair protein, C-terminal domain V429_04895 PF17209 Hfq protein V429_04900 PF16360 GTP-binding GTPase Middle Region V429_04900 PF13167 GTP-binding GTPase N-terminal V429_04900 PF01926 50S ribosome-binding GTPase V429_04905 PF01145 SPFH domain / Band 7 family V429_04905 PF12221 Bacterial membrane protein N terminal V429_04910 PF01145 SPFH domain / Band 7 family V429_04915 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) V429_04920 PF00348 Polyprenyl synthetase V429_04925 PF00829 Ribosomal prokaryotic L21 protein V429_04930 PF01016 Ribosomal L27 protein V429_04935 PF01018 GTP1/OBG V429_04935 PF01926 50S ribosome-binding GTPase V429_04945 PF13193 AMP-binding enzyme C-terminal domain V429_04945 PF00501 AMP-binding enzyme V429_04965 PF00296 Luciferase-like monooxygenase V429_04975 PF00149 Calcineurin-like phosphoesterase V429_04980 PF04379 ApaG domain V429_04985 PF00398 Ribosomal RNA adenine dimethylase V429_04990 PF04166 Pyridoxal phosphate biosynthetic protein PdxA V429_04995 PF00639 PPIC-type PPIASE domain V429_04995 PF09312 SurA N-terminal domain V429_05000 PF03968 OstA-like protein V429_05000 PF04453 LPS transport system D V429_05005 PF01636 Phosphotransferase enzyme family V429_05010 PF00483 Nucleotidyl transferase V429_05015 PF05099 Tellurite resistance protein TerB V429_05015 PF00226 DnaJ domain V429_05020 PF00860 Permease family V429_05030 PF12848 ABC transporter V429_05030 PF00005 ABC transporter V429_05035 PF12167 Arm DNA-binding domain V429_05035 PF00589 Phage integrase family V429_05080 PF00717 Peptidase S24-like V429_05080 PF01381 Helix-turn-helix V429_05165 PF01555 DNA methylase V429_05170 PF00004 ATPase family associated with various cellular activities (AAA) V429_05210 PF03354 Phage Terminase V429_05225 PF01343 Peptidase family S49 V429_05330 PF01048 Phosphorylase superfamily V429_05335 PF01464 Transglycosylase SLT domain V429_05350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_05350 PF03466 LysR substrate binding domain V429_05355 PF01048 Phosphorylase superfamily V429_05360 PF07662 Na+ dependent nucleoside transporter C-terminus V429_05360 PF07670 Nucleoside recognition V429_05360 PF01773 Na+ dependent nucleoside transporter N-terminus V429_05365 PF01791 DeoC/LacD family aldolase V429_05375 PF01370 NAD dependent epimerase/dehydratase family V429_05385 PF00005 ABC transporter V429_05390 PF01032 FecCD transport family V429_05400 PF06228 Haem utilisation ChuX/HutX V429_05405 PF01243 Pyridoxamine 5'-phosphate oxidase V429_05425 PF07715 TonB-dependent Receptor Plug Domain V429_05425 PF00593 TonB dependent receptor V429_05430 PF12832 MFS_1 like family V429_05435 PF13443 Cro/C1-type HTH DNA-binding domain V429_05445 PF00512 His Kinase A (phospho-acceptor) domain V429_05445 PF00989 PAS fold V429_05445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_05450 PF08329 Chitinase A, N-terminal domain V429_05450 PF00704 Glycosyl hydrolases family 18 V429_05455 PF17945 Beta/Gamma crystallin V429_05455 PF12561 ToxR activated gene A lipoprotein domain V429_05460 PF18416 N-acetylglucosamine binding protein domain 2 V429_05460 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading V429_05465 PF13847 Methyltransferase domain V429_05470 PF00027 Cyclic nucleotide-binding domain V429_05470 PF13545 Crp-like helix-turn-helix domain V429_05475 PF02566 OsmC-like protein V429_05490 PF00485 Phosphoribulokinase / Uridine kinase family V429_05495 PF00893 Small Multidrug Resistance protein V429_05500 PF00892 EamA-like transporter family V429_05505 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase V429_05510 PF01522 Polysaccharide deacetylase V429_05515 PF01370 NAD dependent epimerase/dehydratase family V429_05515 PF00551 Formyl transferase V429_05515 PF02911 Formyl transferase, C-terminal domain V429_05520 PF00535 Glycosyl transferase family 2 V429_05525 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V429_05530 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain V429_05530 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain V429_05530 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain V429_05535 PF06794 Uncharacterised protein family (UPF0270) V429_05540 PF01590 GAF domain V429_05540 PF00563 EAL domain V429_05540 PF00990 Diguanylate cyclase, GGDEF domain V429_05540 PF00360 Phytochrome region V429_05545 PF00561 alpha/beta hydrolase fold V429_05550 PF01584 CheW-like domain V429_05550 PF00072 Response regulator receiver domain V429_05560 PF09526 Probable metal-binding protein (DUF2387) V429_05565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_05570 PF04102 SlyX V429_05580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_05580 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V429_05585 PF00158 Sigma-54 interaction domain V429_05585 PF02954 Bacterial regulatory protein, Fis family V429_05585 PF00072 Response regulator receiver domain V429_05605 PF02872 5'-nucleotidase, C-terminal domain V429_05605 PF00149 Calcineurin-like phosphoesterase V429_05610 PF12792 CSS motif domain associated with EAL V429_05610 PF00563 EAL domain V429_05625 PF03796 DnaB-like helicase C terminal domain V429_05625 PF00772 DnaB-like helicase N terminal domain V429_05630 PF00842 Alanine racemase, C-terminal domain V429_05630 PF01168 Alanine racemase, N-terminal domain V429_05640 PF12838 4Fe-4S dicluster domain V429_05650 PF01590 GAF domain V429_05650 PF00990 Diguanylate cyclase, GGDEF domain V429_05650 PF00989 PAS fold V429_05650 PF00563 EAL domain V429_05675 PF00266 Aminotransferase class-V V429_05680 PF00072 Response regulator receiver domain V429_05680 PF01339 CheB methylesterase V429_05685 PF03975 CheD chemotactic sensory transduction V429_05690 PF01739 CheR methyltransferase, SAM binding domain V429_05690 PF03705 CheR methyltransferase, all-alpha domain V429_05695 PF02203 Tar ligand binding domain homologue V429_05695 PF00672 HAMP domain V429_05695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_05700 PF01584 CheW-like domain V429_05705 PF12729 Four helix bundle sensory module for signal transduction V429_05705 PF00672 HAMP domain V429_05705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_05710 PF02895 Signal transducing histidine kinase, homodimeric domain V429_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_05710 PF01627 Hpt domain V429_05710 PF07194 P2 response regulator binding domain V429_05710 PF01584 CheW-like domain V429_05720 PF00072 Response regulator receiver domain V429_05725 PF02743 Cache domain V429_05725 PF00672 HAMP domain V429_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_05735 PF03466 LysR substrate binding domain V429_05735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_05740 PF01810 LysE type translocator V429_05745 PF01136 Peptidase family U32 V429_05745 PF12392 Collagenase V429_05750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V429_05750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V429_05755 PF02805 Metal binding domain of Ada V429_05755 PF06029 AlkA N-terminal domain V429_05755 PF00730 HhH-GPD superfamily base excision DNA repair protein V429_05755 PF12833 Helix-turn-helix domain V429_05765 PF02074 Carboxypeptidase Taq (M32) metallopeptidase V429_05790 PF00106 short chain dehydrogenase V429_05795 PF03573 outer membrane porin, OprD family V429_05800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_05800 PF00672 HAMP domain V429_05800 PF02743 Cache domain V429_05810 PF07995 Glucose / Sorbosone dehydrogenase V429_05815 PF00916 Sulfate permease family V429_05815 PF01740 STAS domain V429_05820 PF03976 Polyphosphate kinase 2 (PPK2) V429_05835 PF00872 Transposase, Mutator family V429_05840 PF13649 Methyltransferase domain V429_05875 PF01590 GAF domain V429_05875 PF00158 Sigma-54 interaction domain V429_05880 PF00005 ABC transporter V429_05900 PF07715 TonB-dependent Receptor Plug Domain V429_05900 PF00593 TonB dependent receptor V429_05925 PF00271 Helicase conserved C-terminal domain V429_05925 PF12137 RNA polymerase recycling family C-terminal V429_05925 PF00176 SNF2 family N-terminal domain V429_05925 PF18337 RapA N-terminal Tudor like domain V429_05925 PF18339 RapA N-terminal Tudor like domain 1 V429_05930 PF00270 DEAD/DEAH box helicase V429_05930 PF00271 Helicase conserved C-terminal domain V429_05930 PF09382 RQC domain V429_05930 PF00570 HRDC domain V429_05930 PF16124 RecQ zinc-binding V429_05950 PF00270 DEAD/DEAH box helicase V429_05950 PF00271 Helicase conserved C-terminal domain V429_05950 PF00570 HRDC domain V429_05950 PF16124 RecQ zinc-binding V429_05950 PF09382 RQC domain V429_05970 PF06508 Queuosine biosynthesis protein QueC V429_05975 PF04055 Radical SAM superfamily V429_05985 PF04002 RadC-like JAB domain V429_06030 PF09588 YqaJ-like viral recombinase domain V429_06060 PF00800 Prephenate dehydratase V429_06060 PF01817 Chorismate mutase type II V429_06090 PF08349 Protein of unknown function (DUF1722) V429_06095 PF13411 MerR HTH family regulatory protein V429_06100 PF00875 DNA photolyase V429_06100 PF03441 FAD binding domain of DNA photolyase V429_06110 PF00106 short chain dehydrogenase V429_06150 PF00210 Ferritin-like domain V429_06160 PF03063 Prismane/CO dehydrogenase family V429_06165 PF00042 Globin V429_06165 PF00970 Oxidoreductase FAD-binding domain V429_06165 PF00175 Oxidoreductase NAD-binding domain V429_06170 PF16363 GDP-mannose 4,6 dehydratase V429_06175 PF06965 Na+/H+ antiporter 1 V429_06175 PF13462 Thioredoxin V429_06185 PF00196 Bacterial regulatory proteins, luxR family V429_06185 PF03472 Autoinducer binding domain V429_06195 PF04717 Type VI secretion system, phage-baseplate injector V429_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_06215 PF03466 LysR substrate binding domain V429_06220 PF03306 Alpha-acetolactate decarboxylase V429_06225 PF00205 Thiamine pyrophosphate enzyme, central domain V429_06225 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V429_06225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_06230 PF01965 DJ-1/PfpI family V429_06235 PF02558 Ketopantoate reductase PanE/ApbA V429_06235 PF08546 Ketopantoate reductase PanE/ApbA C terminal V429_06240 PF04461 Protein of unknown function (DUF520) V429_06245 PF03502 Nucleoside-specific channel-forming protein, Tsx V429_06250 PF07690 Major Facilitator Superfamily V429_06260 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V429_06270 PF05175 Methyltransferase small domain V429_06275 PF01722 BolA-like protein V429_06280 PF11973 NQRA C-terminal domain V429_06280 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) V429_06285 PF03116 NQR2, RnfD, RnfE family V429_06290 PF04205 FMN-binding domain V429_06295 PF02508 Rnf-Nqr subunit, membrane protein V429_06300 PF02508 Rnf-Nqr subunit, membrane protein V429_06305 PF00175 Oxidoreductase NAD-binding domain V429_06305 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_06305 PF00970 Oxidoreductase FAD-binding domain V429_06310 PF02424 ApbE family V429_06325 PF11799 impB/mucB/samB family C-terminal domain V429_06325 PF11798 IMS family HHH motif V429_06325 PF00817 impB/mucB/samB family V429_06330 PF00672 HAMP domain V429_06330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_06335 PF03466 LysR substrate binding domain V429_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_06345 PF04241 Protein of unknown function (DUF423) V429_06350 PF18125 RlmM ferredoxin-like domain V429_06350 PF01728 FtsJ-like methyltransferase V429_06360 PF18324 Hypothetical protein TT1725 V429_06360 PF00180 Isocitrate/isopropylmalate dehydrogenase V429_06365 PF01367 5'-3' exonuclease, C-terminal SAM fold V429_06365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain V429_06370 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases V429_06370 PF11892 Domain of unknown function (DUF3412) V429_06370 PF03641 Possible lysine decarboxylase V429_06375 PF07694 5TMR of 5TMR-LYT V429_06375 PF00990 Diguanylate cyclase, GGDEF domain V429_06385 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term V429_06385 PF14489 QueF-like protein V429_06390 PF07348 Syd protein (SUKH-2) V429_06395 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) V429_06420 PF04287 tRNA pseudouridine synthase C V429_06425 PF00849 RNA pseudouridylate synthase V429_06430 PF00258 Flavodoxin V429_06435 PF02264 LamB porin V429_06440 PF07148 Maltose operon periplasmic protein precursor (MalM) V429_06445 PF00367 phosphotransferase system, EIIB V429_06445 PF02378 Phosphotransferase system, EIIC V429_06450 PF11944 Protein of unknown function (DUF3461) V429_06455 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal V429_06455 PF14602 Hexapeptide repeat of succinyl-transferase V429_06455 PF00132 Bacterial transferase hexapeptide (six repeats) V429_06460 PF01909 Nucleotidyltransferase domain V429_06460 PF01842 ACT domain V429_06460 PF01966 HD domain V429_06460 PF08335 GlnD PII-uridylyltransferase V429_06465 PF00557 Metallopeptidase family M24 V429_06470 PF00318 Ribosomal protein S2 V429_06475 PF00889 Elongation factor TS V429_06480 PF00696 Amino acid kinase family V429_06485 PF01765 Ribosome recycling factor V429_06490 PF01255 Putative undecaprenyl diphosphate synthase V429_06500 PF13288 DXP reductoisomerase C-terminal domain V429_06500 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain V429_06500 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase V429_06510 PF02163 Peptidase family M50 V429_06510 PF17820 PDZ domain V429_06515 PF07244 Surface antigen variable number repeat V429_06515 PF01103 Surface antigen V429_06520 PF03938 Outer membrane protein (OmpH-like) V429_06525 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD V429_06525 PF00132 Bacterial transferase hexapeptide (six repeats) V429_06530 PF07977 FabA-like domain V429_06535 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 V429_06535 PF00132 Bacterial transferase hexapeptide (six repeats) V429_06540 PF02684 Lipid-A-disaccharide synthetase V429_06545 PF01351 Ribonuclease HII V429_06550 PF01336 OB-fold nucleic acid binding domain V429_06550 PF02811 PHP domain V429_06550 PF14579 Helix-hairpin-helix motif V429_06550 PF17657 Bacterial DNA polymerase III alpha subunit finger domain V429_06550 PF07733 Bacterial DNA polymerase III alpha NTPase domain V429_06555 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit V429_06560 PF18500 CadC C-terminal domain 1 V429_06560 PF00486 Transcriptional regulatory protein, C terminal V429_06565 PF13520 Amino acid permease V429_06570 PF01276 Orn/Lys/Arg decarboxylase, major domain V429_06570 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain V429_06570 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain V429_06575 PF08543 Phosphomethylpyrimidine kinase V429_06595 PF12706 Beta-lactamase superfamily domain V429_06600 PF03466 LysR substrate binding domain V429_06600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_06605 PF13520 Amino acid permease V429_06610 PF13302 Acetyltransferase (GNAT) domain V429_06615 PF16326 ABC transporter C-terminal domain V429_06615 PF12848 ABC transporter V429_06615 PF00005 ABC transporter V429_06625 PF05649 Peptidase family M13 V429_06625 PF01431 Peptidase family M13 V429_06630 PF01171 PP-loop family V429_06630 PF09179 TilS substrate binding domain V429_06630 PF11734 TilS substrate C-terminal domain V429_06635 PF00990 Diguanylate cyclase, GGDEF domain V429_06640 PF00999 Sodium/hydrogen exchanger family V429_06640 PF02254 TrkA-N domain V429_06640 PF02080 TrkA-C domain V429_06660 PF00072 Response regulator receiver domain V429_06660 PF00196 Bacterial regulatory proteins, luxR family V429_06670 PF00128 Alpha amylase, catalytic domain V429_06685 PF00535 Glycosyl transferase family 2 V429_06700 PF01471 Putative peptidoglycan binding domain V429_06700 PF03734 L,D-transpeptidase catalytic domain V429_06705 PF05951 Bacterial protein of unknown function (DUF882) V429_06715 PF03458 UPF0126 domain V429_06725 PF06470 SMC proteins Flexible Hinge Domain V429_06725 PF02463 RecF/RecN/SMC N terminal domain V429_06730 PF04354 ZipA, C-terminal FtsZ-binding domain V429_06735 PF12826 Helix-hairpin-helix motif V429_06735 PF01653 NAD-dependent DNA ligase adenylation domain V429_06735 PF03119 NAD-dependent DNA ligase C4 zinc finger domain V429_06735 PF03120 NAD-dependent DNA ligase OB-fold domain V429_06735 PF00533 BRCA1 C Terminus (BRCT) domain V429_06745 PF13597 Anaerobic ribonucleoside-triphosphate reductase V429_06745 PF03477 ATP cone domain V429_06755 PF01679 Proteolipid membrane potential modulator V429_06780 PF00529 HlyD membrane-fusion protein of T1SS V429_06780 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_06785 PF01047 MarR family V429_06795 PF03390 2-hydroxycarboxylate transporter family V429_06800 PF03949 Malic enzyme, NAD binding domain V429_06800 PF00390 Malic enzyme, N-terminal domain V429_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_06805 PF00989 PAS fold V429_06805 PF17203 Single cache domain 3 V429_06805 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V429_06810 PF00072 Response regulator receiver domain V429_06810 PF12431 Transcriptional regulator V429_06815 PF00892 EamA-like transporter family V429_06825 PF00171 Aldehyde dehydrogenase family V429_06830 PF01590 GAF domain V429_06830 PF00158 Sigma-54 interaction domain V429_06830 PF02954 Bacterial regulatory protein, Fis family V429_06835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V429_06835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V429_06835 PF02770 Acyl-CoA dehydrogenase, middle domain V429_06840 PF02515 CoA-transferase family III V429_06845 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_06850 PF00072 Response regulator receiver domain V429_06850 PF00486 Transcriptional regulatory protein, C terminal V429_06855 PF00512 His Kinase A (phospho-acceptor) domain V429_06855 PF00989 PAS fold V429_06855 PF11808 Phosphate regulon sensor protein PhoR V429_06855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_06860 PF12849 PBP superfamily domain V429_06865 PF01435 Peptidase family M48 V429_06875 PF00480 ROK family V429_06880 PF03932 CutC family V429_06885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_06885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V429_06890 PF00005 ABC transporter V429_06910 PF00293 NUDIX domain V429_06920 PF08534 Redoxin V429_06925 PF01699 Sodium/calcium exchanger protein V429_06930 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain V429_06930 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V429_06935 PF01235 Sodium:alanine symporter family V429_06945 PF00860 Permease family V429_06950 PF00990 Diguanylate cyclase, GGDEF domain V429_06950 PF00072 Response regulator receiver domain V429_06955 PF10692 Protein of unknown function (DUF2498) V429_06960 PF01554 MatE V429_06965 PF12833 Helix-turn-helix domain V429_06970 PF03949 Malic enzyme, NAD binding domain V429_06970 PF00390 Malic enzyme, N-terminal domain V429_06975 PF00691 OmpA family V429_06975 PF01389 OmpA-like transmembrane domain V429_06980 PF00691 OmpA family V429_06980 PF01389 OmpA-like transmembrane domain V429_06985 PF01389 OmpA-like transmembrane domain V429_06985 PF00691 OmpA family V429_07000 PF00209 Sodium:neurotransmitter symporter family V429_07005 PF01734 Patatin-like phospholipase V429_07010 PF00990 Diguanylate cyclase, GGDEF domain V429_07015 PF00529 HlyD membrane-fusion protein of T1SS V429_07015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_07020 PF00873 AcrB/AcrD/AcrF family V429_07030 PF11842 Domain of unknown function (DUF3362) V429_07030 PF04055 Radical SAM superfamily V429_07030 PF08497 Radical SAM N-terminal V429_07055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V429_07065 PF02075 Crossover junction endodeoxyribonuclease RuvC V429_07070 PF00230 Major intrinsic protein V429_07075 PF01551 Peptidase family M23 V429_07075 PF10145 Phage-related minor tail protein V429_07075 PF01464 Transglycosylase SLT domain V429_07080 PF00128 Alpha amylase, catalytic domain V429_07085 PF01551 Peptidase family M23 V429_07100 PF13091 PLD-like domain V429_07100 PF13396 Phospholipase_D-nuclease N-terminal V429_07110 PF01842 ACT domain V429_07110 PF00551 Formyl transferase V429_07115 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V429_07125 PF00085 Thioredoxin V429_07130 PF01648 4'-phosphopantetheinyl transferase superfamily V429_07135 PF00877 NlpC/P60 family V429_07140 PF05971 RNA methyltransferase V429_07155 PF17969 L,D-transpeptidase C-terminal domain V429_07155 PF01476 LysM domain V429_07155 PF03734 L,D-transpeptidase catalytic domain V429_07165 PF00271 Helicase conserved C-terminal domain V429_07165 PF00176 SNF2 family N-terminal domain V429_07225 PF04002 RadC-like JAB domain V429_07295 PF05930 Prophage CP4-57 regulatory protein (AlpA) V429_07305 PF00589 Phage integrase family V429_07305 PF13356 Arm DNA-binding domain V429_07310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_07315 PF00528 Binding-protein-dependent transport system inner membrane component V429_07320 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_07320 PF00528 Binding-protein-dependent transport system inner membrane component V429_07325 PF00005 ABC transporter V429_07325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_07330 PF00465 Iron-containing alcohol dehydrogenase V429_07335 PF05025 RbsD / FucU transport protein family V429_07345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V429_07345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V429_07350 PF02952 L-fucose isomerase, C-terminal domain V429_07350 PF07882 L-fucose isomerase, second N-terminal domain V429_07350 PF07881 L-fucose isomerase, first N-terminal domain V429_07355 PF07690 Major Facilitator Superfamily V429_07360 PF00455 DeoR C terminal sensor domain V429_07360 PF08220 DeoR-like helix-turn-helix domain V429_07365 PF00141 Peroxidase V429_07370 PF00701 Dihydrodipicolinate synthetase family V429_07375 PF01418 Helix-turn-helix domain, rpiR family V429_07375 PF01380 SIS domain V429_07380 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase V429_07385 PF00480 ROK family V429_07390 PF00474 Sodium:solute symporter family V429_07395 PF04074 YhcH/YjgK/YiaL V429_07425 PF00893 Small Multidrug Resistance protein V429_07430 PF00893 Small Multidrug Resistance protein V429_07440 PF06130 Phosphate propanoyltransferase V429_07445 PF00936 BMC domain V429_07450 PF13187 4Fe-4S dicluster domain V429_07450 PF04055 Radical SAM superfamily V429_07455 PF02901 Pyruvate formate lyase-like V429_07455 PF01228 Glycine radical V429_07460 PF00171 Aldehyde dehydrogenase family V429_07460 PF00465 Iron-containing alcohol dehydrogenase V429_07470 PF00465 Iron-containing alcohol dehydrogenase V429_07470 PF00171 Aldehyde dehydrogenase family V429_07475 PF00936 BMC domain V429_07480 PF00936 BMC domain V429_07485 PF00936 BMC domain V429_07505 PF03466 LysR substrate binding domain V429_07505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_07510 PF02634 FdhD/NarQ family V429_07515 PF00384 Molybdopterin oxidoreductase V429_07530 PF00440 Bacterial regulatory proteins, tetR family V429_07535 PF09317 Domain of unknown function (DUF1974) V429_07535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V429_07535 PF02770 Acyl-CoA dehydrogenase, middle domain V429_07535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V429_07540 PF00873 AcrB/AcrD/AcrF family V429_07550 PF02887 Pyruvate kinase, alpha/beta domain V429_07550 PF00224 Pyruvate kinase, barrel domain V429_07555 PF01380 SIS domain V429_07555 PF01418 Helix-turn-helix domain, rpiR family V429_07560 PF02685 Glucokinase V429_07570 PF00486 Transcriptional regulatory protein, C terminal V429_07570 PF00072 Response regulator receiver domain V429_07575 PF03412 Peptidase C39 family V429_07575 PF00005 ABC transporter V429_07575 PF00664 ABC transporter transmembrane region V429_07585 PF00664 ABC transporter transmembrane region V429_07585 PF03412 Peptidase C39 family V429_07585 PF00005 ABC transporter V429_07600 PF12146 Serine aminopeptidase, S33 V429_07600 PF16671 Actin cross-linking domain V429_07600 PF07634 RtxA repeat V429_07600 PF11713 Peptidase C80 family V429_07600 PF11647 Membrane Localization Domain V429_07610 PF04055 Radical SAM superfamily V429_07610 PF00919 Uncharacterized protein family UPF0004 V429_07610 PF18693 TRAM domain V429_07615 PF00072 Response regulator receiver domain V429_07625 PF02049 Flagellar hook-basal body complex protein FliE V429_07630 PF01514 Secretory protein of YscJ/FliF family V429_07630 PF08345 Flagellar M-ring protein C-terminal V429_07635 PF01706 FliG C-terminal domain V429_07635 PF14841 FliG middle domain V429_07635 PF14842 FliG N-terminal domain V429_07645 PF18269 T3SS EscN ATPase C-terminal domain V429_07645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V429_07665 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V429_07665 PF02154 Flagellar motor switch protein FliM V429_07670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term V429_07675 PF04347 Flagellar biosynthesis protein, FliO V429_07680 PF00813 FliP family V429_07685 PF01313 Bacterial export proteins, family 3 V429_07690 PF01311 Bacterial export proteins, family 1 V429_07695 PF01312 FlhB HrpN YscU SpaS Family V429_07700 PF00771 FHIPEP family V429_07705 PF00448 SRP54-type protein, GTPase domain V429_07710 PF10609 NUBPL iron-transfer P-loop NTPase V429_07715 PF04539 Sigma-70 region 3 V429_07715 PF04545 Sigma-70, region 4 V429_07715 PF04542 Sigma-70 region 2 V429_07720 PF00072 Response regulator receiver domain V429_07725 PF04344 Chemotaxis phosphatase, CheZ V429_07730 PF01584 CheW-like domain V429_07730 PF02895 Signal transducing histidine kinase, homodimeric domain V429_07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_07730 PF01627 Hpt domain V429_07730 PF07194 P2 response regulator binding domain V429_07735 PF01339 CheB methylesterase V429_07735 PF00072 Response regulator receiver domain V429_07740 PF01618 MotA/TolQ/ExbB proton channel family V429_07745 PF00691 OmpA family V429_07745 PF13677 Membrane MotB of proton-channel complex MotA/MotB V429_07750 PF13614 AAA domain V429_07760 PF01584 CheW-like domain V429_07770 PF00005 ABC transporter V429_07775 PF03379 CcmB protein V429_07780 PF01578 Cytochrome C assembly protein V429_07785 PF04995 Heme exporter protein D (CcmD) V429_07790 PF03100 CcmE V429_07795 PF01578 Cytochrome C assembly protein V429_07795 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V429_07800 PF08534 Redoxin V429_07805 PF03918 Cytochrome C biogenesis protein V429_07810 PF03918 Cytochrome C biogenesis protein V429_07815 PF04333 MlaA lipoprotein V429_07820 PF02777 Iron/manganese superoxide dismutases, C-terminal domain V429_07820 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain V429_07825 PF00462 Glutaredoxin V429_07830 PF01029 NusB family V429_07830 PF01189 16S rRNA methyltransferase RsmB/F V429_07845 PF01243 Pyridoxamine 5'-phosphate oxidase V429_07845 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region V429_07850 PF02798 Glutathione S-transferase, N-terminal domain V429_07860 PF13508 Acetyltransferase (GNAT) domain V429_07870 PF08007 Cupin superfamily protein V429_07875 PF08328 Adenylosuccinate lyase C-terminal V429_07875 PF00206 Lyase V429_07880 PF04356 Protein of unknown function (DUF489) V429_07890 PF00293 NUDIX domain V429_07895 PF00849 RNA pseudouridylate synthase V429_07905 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V429_07910 PF07690 Major Facilitator Superfamily V429_07915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_07915 PF02378 Phosphotransferase system, EIIC V429_07915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V429_07935 PF00583 Acetyltransferase (GNAT) family V429_07950 PF00356 Bacterial regulatory proteins, lacI family V429_07950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_07955 PF02378 Phosphotransferase system, EIIC V429_07955 PF00367 phosphotransferase system, EIIB V429_07960 PF00155 Aminotransferase class I and II V429_07985 PF01238 Phosphomannose isomerase type I V429_07990 PF12833 Helix-turn-helix domain V429_07995 PF00180 Isocitrate/isopropylmalate dehydrogenase V429_08005 PF00291 Pyridoxal-phosphate dependent enzyme V429_08010 PF02447 GntP family permease V429_08015 PF03466 LysR substrate binding domain V429_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_08040 PF01420 Type I restriction modification DNA specificity domain V429_08045 PF12161 HsdM N-terminal domain V429_08045 PF02384 N-6 DNA Methylase V429_08050 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V429_08050 PF00271 Helicase conserved C-terminal domain V429_08050 PF08463 EcoEI R protein C-terminal V429_08050 PF04851 Type III restriction enzyme, res subunit V429_08120 PF08765 Mor transcription activator family V429_08155 PF08461 Ribonuclease R winged-helix domain V429_08160 PF11985 Protein of unknown function (DUF3486) V429_08165 PF03237 Terminase-like family V429_08170 PF06074 Protein of unknown function (DUF935) V429_08190 PF10123 Mu-like prophage I protein V429_08195 PF10124 Mu-like prophage major head subunit gpT V429_08270 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) V429_08270 PF00271 Helicase conserved C-terminal domain V429_08270 PF08463 EcoEI R protein C-terminal V429_08270 PF04851 Type III restriction enzyme, res subunit V429_08275 PF01668 SmpB protein V429_08280 PF03364 Polyketide cyclase / dehydrase and lipid transport V429_08290 PF13460 NAD(P)H-binding V429_08295 PF04355 SmpA / OmlA family V429_08325 PF04972 BON domain V429_08325 PF00263 Bacterial type II and III secretion system protein V429_08325 PF13629 Pilus formation protein N terminal region V429_08340 PF00437 Type II/IV secretion system protein V429_08375 PF00465 Iron-containing alcohol dehydrogenase V429_08380 PF01048 Phosphorylase superfamily V429_08385 PF00849 RNA pseudouridylate synthase V429_08390 PF01156 Inosine-uridine preferring nucleoside hydrolase V429_08405 PF07509 Protein of unknown function (DUF1523) V429_08410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_08410 PF00672 HAMP domain V429_08415 PF01810 LysE type translocator V429_08425 PF03471 Transporter associated domain V429_08425 PF00999 Sodium/hydrogen exchanger family V429_08425 PF02080 TrkA-C domain V429_08435 PF00999 Sodium/hydrogen exchanger family V429_08435 PF03471 Transporter associated domain V429_08435 PF02080 TrkA-C domain V429_08445 PF02557 D-alanyl-D-alanine carboxypeptidase V429_08450 PF07687 Peptidase dimerisation domain V429_08450 PF01546 Peptidase family M20/M25/M40 V429_08455 PF03960 ArsC family V429_08460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_08460 PF03466 LysR substrate binding domain V429_08470 PF03606 C4-dicarboxylate anaerobic carrier V429_08475 PF01546 Peptidase family M20/M25/M40 V429_08475 PF07687 Peptidase dimerisation domain V429_08485 PF03605 Anaerobic c4-dicarboxylate membrane transporter V429_08490 PF01336 OB-fold nucleic acid binding domain V429_08490 PF00152 tRNA synthetases class II (D, K and N) V429_08510 PF04055 Radical SAM superfamily V429_08510 PF06968 Biotin and Thiamin Synthesis associated domain V429_08515 PF00155 Aminotransferase class I and II V429_08520 PF08241 Methyltransferase domain V429_08520 PF12697 Alpha/beta hydrolase family V429_08530 PF01435 Peptidase family M48 V429_08535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_08535 PF08447 PAS fold V429_08535 PF13426 PAS domain V429_08540 PF03476 MOSC N-terminal beta barrel domain V429_08540 PF03473 MOSC domain V429_08540 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_08540 PF03473 MOSC domain V429_08540 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_08540 PF03476 MOSC N-terminal beta barrel domain V429_08545 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V429_08545 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V429_08545 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_08550 PF10371 Domain of unknown function V429_08550 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V429_08550 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V429_08550 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V429_08550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_08555 PF01804 Penicillin amidase V429_08575 PF01554 MatE V429_08595 PF00291 Pyridoxal-phosphate dependent enzyme V429_08605 PF00465 Iron-containing alcohol dehydrogenase V429_08615 PF00440 Bacterial regulatory proteins, tetR family V429_08615 PF08359 YsiA-like protein, C-terminal region V429_08620 PF00171 Aldehyde dehydrogenase family V429_08630 PF00877 NlpC/P60 family V429_08635 PF07968 Leukocidin/Hemolysin toxin family V429_08635 PF12563 Hemolytic toxin N terminal V429_08640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_08640 PF03466 LysR substrate binding domain V429_08645 PF10417 C-terminal domain of 1-Cys peroxiredoxin V429_08645 PF00578 AhpC/TSA family V429_08665 PF08003 Protein of unknown function (DUF1698) V429_08670 PF13649 Methyltransferase domain V429_08675 PF01904 Protein of unknown function DUF72 V429_08680 PF01336 OB-fold nucleic acid binding domain V429_08680 PF00152 tRNA synthetases class II (D, K and N) V429_08680 PF02938 GAD domain V429_08685 PF01709 Transcriptional regulator V429_08690 PF00884 Sulfatase V429_08690 PF08019 Phosphoethanolamine transferase EptA/EptB V429_08700 PF01047 MarR family V429_08700 PF00480 ROK family V429_08705 PF01979 Amidohydrolase family V429_08710 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase V429_08715 PF02378 Phosphotransferase system, EIIC V429_08715 PF00367 phosphotransferase system, EIIB V429_08715 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V429_08720 PF00728 Glycosyl hydrolase family 20, catalytic domain V429_08720 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain V429_08720 PF02838 Glycosyl hydrolase family 20, domain 2 V429_08720 PF03173 Putative carbohydrate binding domain V429_08725 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain V429_08725 PF00749 tRNA synthetases class I (E and Q), catalytic domain V429_08730 PF01475 Ferric uptake regulator family V429_08740 PF00258 Flavodoxin V429_08745 PF01402 Ribbon-helix-helix protein, copG family V429_08755 PF12697 Alpha/beta hydrolase family V429_08760 PF03925 SeqA protein C-terminal domain V429_08760 PF17206 SeqA protein N-terminal domain V429_08765 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V429_08765 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V429_08765 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V429_08765 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V429_08775 PF01047 MarR family V429_08780 PF13406 Transglycosylase SLT domain V429_08785 PF01066 CDP-alcohol phosphatidyltransferase V429_08790 PF00005 ABC transporter V429_08800 PF13416 Bacterial extracellular solute-binding protein V429_08805 PF00403 Heavy-metal-associated domain V429_08805 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_08805 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V429_08810 PF02627 Carboxymuconolactone decarboxylase family V429_08820 PF01625 Peptide methionine sulfoxide reductase V429_08835 PF07244 Surface antigen variable number repeat V429_08835 PF01103 Surface antigen V429_08835 PF17243 POTRA domain TamA domain 1 V429_08840 PF04357 TamB, inner membrane protein subunit of TAM complex V429_08860 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V429_08865 PF00990 Diguanylate cyclase, GGDEF domain V429_08865 PF00563 EAL domain V429_08865 PF03707 Bacterial signalling protein N terminal repeat V429_08870 PF14718 Soluble lytic murein transglycosylase L domain V429_08870 PF01464 Transglycosylase SLT domain V429_08875 PF00356 Bacterial regulatory proteins, lacI family V429_08885 PF03061 Thioesterase superfamily V429_08895 PF03372 Endonuclease/Exonuclease/phosphatase family V429_08900 PF01464 Transglycosylase SLT domain V429_08900 PF01476 LysM domain V429_08905 PF16123 Hydroxyacylglutathione hydrolase C-terminus V429_08905 PF00753 Metallo-beta-lactamase superfamily V429_08910 PF08241 Methyltransferase domain V429_08915 PF00075 RNase H V429_08920 PF00929 Exonuclease V429_08930 PF11849 Domain of unknown function (DUF3369) V429_08940 PF09317 Domain of unknown function (DUF1974) V429_08940 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V429_08940 PF02770 Acyl-CoA dehydrogenase, middle domain V429_08940 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V429_08945 PF13580 SIS domain V429_08950 PF13230 Glutamine amidotransferases class-II V429_08960 PF01933 Uncharacterised protein family UPF0052 V429_08970 PF17149 Periplasmic sensor domain found in signal transduction proteins V429_08970 PF00072 Response regulator receiver domain V429_08970 PF01627 Hpt domain V429_08970 PF00672 HAMP domain V429_08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_08970 PF00512 His Kinase A (phospho-acceptor) domain V429_08980 PF00196 Bacterial regulatory proteins, luxR family V429_08980 PF00072 Response regulator receiver domain V429_08985 PF07730 Histidine kinase V429_08985 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term V429_08985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_08985 PF00672 HAMP domain V429_08990 PF04055 Radical SAM superfamily V429_08990 PF06463 Molybdenum Cofactor Synthesis C V429_08995 PF12800 4Fe-4S binding domain V429_08995 PF00037 4Fe-4S binding domain V429_08995 PF13187 4Fe-4S dicluster domain V429_09010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_09010 PF00384 Molybdopterin oxidoreductase V429_09010 PF01568 Molydopterin dinucleotide binding domain V429_09010 PF10518 TAT (twin-arginine translocation) pathway signal sequence V429_09015 PF12838 4Fe-4S dicluster domain V429_09015 PF12800 4Fe-4S binding domain V429_09020 PF12801 4Fe-4S binding domain V429_09020 PF13237 4Fe-4S dicluster domain V429_09025 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) V429_09030 PF03264 NapC/NirT cytochrome c family, N-terminal region V429_09035 PF00994 Probable molybdopterin binding domain V429_09040 PF01967 MoaC family V429_09045 PF02597 ThiS family V429_09050 PF02391 MoaE protein V429_09060 PF00528 Binding-protein-dependent transport system inner membrane component V429_09065 PF00005 ABC transporter V429_09065 PF03459 TOBE domain V429_09070 PF00561 alpha/beta hydrolase fold V429_09075 PF00899 ThiF family V429_09080 PF00994 Probable molybdopterin binding domain V429_09080 PF03454 MoeA C-terminal region (domain IV) V429_09080 PF03453 MoeA N-terminal region (domain I and II) V429_09085 PF01227 GTP cyclohydrolase I V429_09090 PF00672 HAMP domain V429_09090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_09090 PF17200 Single Cache domain 2 V429_09095 PF01268 Formate--tetrahydrofolate ligase V429_09105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_09105 PF03466 LysR substrate binding domain V429_09110 PF04264 YceI-like domain V429_09135 PF01546 Peptidase family M20/M25/M40 V429_09135 PF07687 Peptidase dimerisation domain V429_09140 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain V429_09140 PF17944 Arginine decarboxylase C-terminal helical extension V429_09140 PF17810 Arginine decarboxylase helical bundle domain V429_09155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_09155 PF00672 HAMP domain V429_09165 PF01042 Endoribonuclease L-PSP V429_09170 PF03313 Serine dehydratase alpha chain V429_09175 PF08348 YheO-like PAS domain V429_09175 PF13309 HTH domain V429_09180 PF00300 Histidine phosphatase superfamily (branch 1) V429_09185 PF00271 Helicase conserved C-terminal domain V429_09185 PF04851 Type III restriction enzyme, res subunit V429_09205 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase V429_09205 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain V429_09215 PF00849 RNA pseudouridylate synthase V429_09215 PF01479 S4 domain V429_09220 PF07690 Major Facilitator Superfamily V429_09230 PF03466 LysR substrate binding domain V429_09230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_09235 PF07690 Major Facilitator Superfamily V429_09260 PF04391 Protein of unknown function (DUF533) V429_09270 PF00392 Bacterial regulatory proteins, gntR family V429_09270 PF00155 Aminotransferase class I and II V429_09275 PF01654 Cytochrome bd terminal oxidase subunit I V429_09280 PF02322 Cytochrome bd terminal oxidase subunit II V429_09290 PF07690 Major Facilitator Superfamily V429_09295 PF00248 Aldo/keto reductase family V429_09315 PF03466 LysR substrate binding domain V429_09315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_09320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V429_09320 PF00370 FGGY family of carbohydrate kinases, N-terminal domain V429_09325 PF00230 Major intrinsic protein V429_09330 PF07690 Major Facilitator Superfamily V429_09335 PF08220 DeoR-like helix-turn-helix domain V429_09335 PF00455 DeoR C terminal sensor domain V429_09345 PF01266 FAD dependent oxidoreductase V429_09345 PF16901 C-terminal domain of alpha-glycerophosphate oxidase V429_09350 PF03009 Glycerophosphoryl diester phosphodiesterase family V429_09355 PF00793 DAHP synthetase I family V429_09360 PF01817 Chorismate mutase type II V429_09360 PF02153 Prephenate dehydrogenase V429_09365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_09365 PF03466 LysR substrate binding domain V429_09370 PF04219 Protein of unknown function, DUF V429_09375 PF03974 Ecotin V429_09395 PF00326 Prolyl oligopeptidase family V429_09395 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain V429_09400 PF07715 TonB-dependent Receptor Plug Domain V429_09400 PF00593 TonB dependent receptor V429_09405 PF00884 Sulfatase V429_09405 PF11893 Domain of unknown function (DUF3413) V429_09410 PF07208 Protein of unknown function (DUF1414) V429_09415 PF04245 37-kD nucleoid-associated bacterial protein V429_09420 PF01547 Bacterial extracellular solute-binding protein V429_09425 PF00528 Binding-protein-dependent transport system inner membrane component V429_09425 PF14785 Maltose transport system permease protein MalF P2 domain V429_09430 PF00528 Binding-protein-dependent transport system inner membrane component V429_09435 PF00005 ABC transporter V429_09435 PF08402 TOBE domain V429_09440 PF03976 Polyphosphate kinase 2 (PPK2) V429_09445 PF00561 alpha/beta hydrolase fold V429_09455 PF01594 AI-2E family transporter V429_09465 PF13181 Tetratricopeptide repeat V429_09465 PF01435 Peptidase family M48 V429_09470 PF00578 AhpC/TSA family V429_09475 PF03960 ArsC family V429_09495 PF04336 Acyl carrier protein phosphodiesterase V429_09500 PF01979 Amidohydrolase family V429_09505 PF03956 Lysine exporter LysO V429_09510 PF00005 ABC transporter V429_09515 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_09520 PF00528 Binding-protein-dependent transport system inner membrane component V429_09525 PF00528 Binding-protein-dependent transport system inner membrane component V429_09535 PF04055 Radical SAM superfamily V429_09540 PF03707 Bacterial signalling protein N terminal repeat V429_09540 PF00563 EAL domain V429_09540 PF00990 Diguanylate cyclase, GGDEF domain V429_09545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V429_09545 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_09560 PF00529 HlyD membrane-fusion protein of T1SS V429_09560 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_09565 PF02321 Outer membrane efflux protein V429_09570 PF01594 AI-2E family transporter V429_09575 PF01546 Peptidase family M20/M25/M40 V429_09575 PF07687 Peptidase dimerisation domain V429_09580 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain V429_09580 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain V429_09580 PF07703 Alpha-2-macroglobulin bait region domain V429_09580 PF00207 Alpha-2-macroglobulin family V429_09580 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain V429_09580 PF17962 Bacterial macroglobulin domain 6 V429_09580 PF01835 MG2 domain V429_09580 PF07678 A-macroglobulin TED domain V429_09580 PF11974 Bacterial alpha-2-macroglobulin MG3 domain V429_09585 PF06832 Penicillin-Binding Protein C-terminus Family V429_09585 PF00912 Transglycosylase V429_09585 PF00905 Penicillin binding protein transpeptidase domain V429_09595 PF02926 THUMP domain V429_09595 PF02568 Thiamine biosynthesis protein (ThiI) V429_09605 PF03458 UPF0126 domain V429_09610 PF00700 Bacterial flagellin C-terminal helical region V429_09610 PF07196 Flagellin hook IN motif V429_09610 PF00669 Bacterial flagellin N-terminal helical region V429_09615 PF07196 Flagellin hook IN motif V429_09615 PF00669 Bacterial flagellin N-terminal helical region V429_09615 PF00700 Bacterial flagellin C-terminal helical region V429_09625 PF01527 Transposase V429_09630 PF00700 Bacterial flagellin C-terminal helical region V429_09630 PF00669 Bacterial flagellin N-terminal helical region V429_09630 PF07196 Flagellin hook IN motif V429_09640 PF07196 Flagellin hook IN motif V429_09640 PF07195 Flagellar hook-associated protein 2 C-terminus V429_09640 PF02465 Flagellar hook-associated protein 2 N-terminus V429_09645 PF02561 Flagellar protein FliS V429_09675 PF03102 NeuB family V429_09675 PF08666 SAF domain V429_09685 PF00202 Aminotransferase class-III V429_09700 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V429_09705 PF02719 Polysaccharide biosynthesis protein V429_09710 PF01497 Periplasmic binding protein V429_09720 PF01048 Phosphorylase superfamily V429_09730 PF02535 ZIP Zinc transporter V429_09735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_09735 PF00672 HAMP domain V429_09740 PF00459 Inositol monophosphatase family V429_09750 PF00043 Glutathione S-transferase, C-terminal domain V429_09750 PF02798 Glutathione S-transferase, N-terminal domain V429_09755 PF07690 Major Facilitator Superfamily V429_09760 PF05164 Cell division protein ZapA V429_09765 PF03695 Uncharacterised protein family (UPF0149) V429_09770 PF01494 FAD binding domain V429_09775 PF01494 FAD binding domain V429_09780 PF01571 Aminomethyltransferase folate-binding domain V429_09780 PF08669 Glycine cleavage T-protein C-terminal barrel domain V429_09785 PF01597 Glycine cleavage H-protein V429_09790 PF02347 Glycine cleavage system P-protein V429_09795 PF01022 Bacterial regulatory protein, arsR family V429_09800 PF01758 Sodium Bile acid symporter family V429_09805 PF03960 ArsC family V429_09810 PF08241 Methyltransferase domain V429_09820 PF07690 Major Facilitator Superfamily V429_09825 PF13192 Thioredoxin domain V429_09825 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_09830 PF10417 C-terminal domain of 1-Cys peroxiredoxin V429_09830 PF00578 AhpC/TSA family V429_09835 PF00571 CBS domain V429_09840 PF02547 Queuosine biosynthesis protein V429_09845 PF01702 Queuine tRNA-ribosyltransferase V429_09850 PF02699 Preprotein translocase subunit V429_09855 PF07549 SecD/SecF GG Motif V429_09855 PF13721 SecD export protein N-terminal TM region V429_09855 PF02355 Protein export membrane protein V429_09860 PF02355 Protein export membrane protein V429_09860 PF07549 SecD/SecF GG Motif V429_09870 PF07719 Tetratricopeptide repeat V429_09870 PF13181 Tetratricopeptide repeat V429_09895 PF00588 SpoU rRNA Methylase family V429_09900 PF02082 Transcriptional regulator V429_09905 PF00266 Aminotransferase class-V V429_09910 PF01592 NifU-like N terminal domain V429_09915 PF01521 Iron-sulphur cluster biosynthesis V429_09920 PF07743 HSCB C-terminal oligomerisation domain V429_09925 PF00012 Hsp70 protein V429_09930 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_09935 PF00883 Cytosol aminopeptidase family, catalytic domain V429_09935 PF12404 Peptidase V429_09940 PF12404 Peptidase V429_09940 PF00883 Cytosol aminopeptidase family, catalytic domain V429_09945 PF00334 Nucleoside diphosphate kinase V429_09950 PF04055 Radical SAM superfamily V429_09960 PF13464 Domain of unknown function (DUF4115) V429_09965 PF04551 GcpE protein V429_09970 PF13393 Histidyl-tRNA synthetase V429_09970 PF03129 Anticodon binding domain V429_09975 PF09976 Tetratricopeptide repeat-like domain V429_09980 PF13360 PQQ-like domain V429_09985 PF01926 50S ribosome-binding GTPase V429_09985 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal V429_09990 PF07191 zinc-ribbons V429_09995 PF01464 Transglycosylase SLT domain V429_09995 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_10000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain V429_10000 PF02769 AIR synthase related protein, C-terminal domain V429_10000 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal V429_10010 PF00361 Proton-conducting membrane transporter V429_10015 PF00361 Proton-conducting membrane transporter V429_10020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus V429_10020 PF00361 Proton-conducting membrane transporter V429_10025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L V429_10030 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 V429_10035 PF12838 4Fe-4S dicluster domain V429_10040 PF00146 NADH dehydrogenase V429_10045 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V429_10045 PF00384 Molybdopterin oxidoreductase V429_10045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_10050 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region V429_10050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V429_10060 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V429_10060 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V429_10065 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V429_10070 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 V429_10075 PF13677 Membrane MotB of proton-channel complex MotA/MotB V429_10075 PF00691 OmpA family V429_10080 PF01618 MotA/TolQ/ExbB proton channel family V429_10095 PF04536 TPM domain V429_10105 PF03411 Penicillin-insensitive murein endopeptidase V429_10115 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) V429_10120 PF00248 Aldo/keto reductase family V429_10135 PF01212 Beta-eliminating lyase V429_10145 PF00072 Response regulator receiver domain V429_10150 PF03466 LysR substrate binding domain V429_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10165 PF00563 EAL domain V429_10165 PF13188 PAS domain V429_10165 PF03707 Bacterial signalling protein N terminal repeat V429_10165 PF00990 Diguanylate cyclase, GGDEF domain V429_10170 PF00881 Nitroreductase family V429_10185 PF07690 Major Facilitator Superfamily V429_10190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10190 PF03466 LysR substrate binding domain V429_10195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10195 PF03466 LysR substrate binding domain V429_10200 PF00925 GTP cyclohydrolase II V429_10205 PF02224 Cytidylate kinase V429_10210 PF00575 S1 RNA binding domain V429_10215 PF00216 Bacterial DNA-binding protein V429_10225 PF18073 Rubredoxin metal binding domain V429_10230 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family V429_10245 PF06508 Queuosine biosynthesis protein QueC V429_10250 PF04055 Radical SAM superfamily V429_10255 PF12843 Putative quorum-sensing-regulated virulence factor V429_10260 PF01923 Cobalamin adenosyltransferase V429_10265 PF00816 H-NS histone family V429_10270 PF03553 Na+/H+ antiporter family V429_10275 PF00265 Thymidine kinase V429_10285 PF10722 Putative bacterial sensory transduction regulator V429_10305 PF04717 Type VI secretion system, phage-baseplate injector V429_10310 PF00182 Chitinase class I V429_10340 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain V429_10340 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain V429_10345 PF00313 'Cold-shock' DNA-binding domain V429_10350 PF02617 ATP-dependent Clp protease adaptor protein ClpS V429_10355 PF00004 ATPase family associated with various cellular activities (AAA) V429_10355 PF07724 AAA domain (Cdc48 subfamily) V429_10355 PF17871 AAA lid domain V429_10355 PF02861 Clp amino terminal domain, pathogenicity island component V429_10355 PF10431 C-terminal, D2-small domain, of ClpB protein V429_10360 PF01176 Translation initiation factor 1A / IF-1 V429_10365 PF04376 Arginine-tRNA-protein transferase, N terminus V429_10365 PF04377 Arginine-tRNA-protein transferase, C terminus V429_10370 PF03588 Leucyl/phenylalanyl-tRNA protein transferase V429_10375 PF05433 Glycine zipper 2TM domain V429_10380 PF00990 Diguanylate cyclase, GGDEF domain V429_10380 PF17158 Membrane-associated sensor, integral membrane domain V429_10385 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_10390 PF01037 Lrp/AsnC ligand binding domain V429_10395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE V429_10395 PF09397 Ftsk gamma domain V429_10395 PF01580 FtsK/SpoIIIE family V429_10395 PF17854 FtsK alpha domain V429_10400 PF03548 Outer membrane lipoprotein carrier protein LolA V429_10405 PF16193 AAA C-terminal domain V429_10405 PF00004 ATPase family associated with various cellular activities (AAA) V429_10405 PF12002 MgsA AAA+ ATPase C terminal V429_10415 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V429_10415 PF02403 Seryl-tRNA synthetase N-terminal domain V429_10420 PF02674 Colicin V production protein V429_10425 PF00156 Phosphoribosyl transferase domain V429_10430 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) V429_10435 PF00005 ABC transporter V429_10440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_10440 PF00005 ABC transporter V429_10450 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_10450 PF00528 Binding-protein-dependent transport system inner membrane component V429_10455 PF00528 Binding-protein-dependent transport system inner membrane component V429_10460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_10465 PF02954 Bacterial regulatory protein, Fis family V429_10465 PF00158 Sigma-54 interaction domain V429_10470 PF04012 PspA/IM30 family V429_10475 PF06667 Phage shock protein B V429_10485 PF04317 YcjX-like family, DUF463 V429_10490 PF05128 Domain of unknown function (DUF697) V429_10495 PF00351 Biopterin-dependent aromatic amino acid hydroxylase V429_10500 PF01329 Pterin 4 alpha carbinolamine dehydratase V429_10505 PF01329 Pterin 4 alpha carbinolamine dehydratase V429_10510 PF18024 Helix-turn-helix domain V429_10510 PF00158 Sigma-54 interaction domain V429_10520 PF17152 Periplasmic sensor domain V429_10520 PF00990 Diguanylate cyclase, GGDEF domain V429_10525 PF00691 OmpA family V429_10530 PF03741 Integral membrane protein TerC family V429_10540 PF08891 YfcL protein V429_10545 PF00501 AMP-binding enzyme V429_10550 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region V429_10550 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V429_10555 PF04172 LrgB-like family V429_10560 PF03788 LrgA family V429_10575 PF08411 Exonuclease C-terminal V429_10575 PF00929 Exonuclease V429_10580 PF11762 L-arabinose isomerase C-terminal domain V429_10580 PF02610 L-arabinose isomerase V429_10585 PF00596 Class II Aldolase and Adducin N-terminal domain V429_10590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain V429_10595 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_10600 PF00005 ABC transporter V429_10605 PF02653 Branched-chain amino acid transport system / permease component V429_10610 PF02311 AraC-like ligand binding domain V429_10610 PF12833 Helix-turn-helix domain V429_10615 PF03466 LysR substrate binding domain V429_10615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10620 PF05726 Pirin C-terminal cupin domain V429_10620 PF02678 Pirin V429_10625 PF00444 Ribosomal protein L36 V429_10630 PF01197 Ribosomal protein L31 V429_10645 PF01863 Protein of unknown function DUF45 V429_10660 PF03606 C4-dicarboxylate anaerobic carrier V429_10670 PF01266 FAD dependent oxidoreductase V429_10670 PF05430 S-adenosyl-L-methionine-dependent methyltransferase V429_10675 PF00109 Beta-ketoacyl synthase, N-terminal domain V429_10675 PF02801 Beta-ketoacyl synthase, C-terminal domain V429_10690 PF00285 Citrate synthase, C-terminal domain V429_10695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V429_10700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit V429_10705 PF00890 FAD binding domain V429_10705 PF02910 Fumarate reductase flavoprotein C-term V429_10710 PF13085 2Fe-2S iron-sulfur cluster binding domain V429_10715 PF16870 2-oxoglutarate dehydrogenase C-terminal V429_10715 PF02779 Transketolase, pyrimidine binding domain V429_10715 PF16078 2-oxoglutarate dehydrogenase N-terminus V429_10715 PF00676 Dehydrogenase E1 component V429_10720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V429_10720 PF00364 Biotin-requiring enzyme V429_10720 PF02817 e3 binding domain V429_10725 PF00549 CoA-ligase V429_10725 PF08442 ATP-grasp domain V429_10730 PF02629 CoA binding domain V429_10730 PF00549 CoA-ligase V429_10740 PF03692 Putative zinc- or iron-chelating domain V429_10745 PF01266 FAD dependent oxidoreductase V429_10750 PF00528 Binding-protein-dependent transport system inner membrane component V429_10755 PF00005 ABC transporter V429_10765 PF00392 Bacterial regulatory proteins, gntR family V429_10765 PF07702 UTRA domain V429_10770 PF00266 Aminotransferase class-V V429_10775 PF00202 Aminotransferase class-III V429_10785 PF02901 Pyruvate formate lyase-like V429_10785 PF01228 Glycine radical V429_10790 PF01226 Formate/nitrite transporter V429_10795 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding V429_10795 PF18381 YcaO cyclodehydratase C-terminal domain V429_10800 PF00893 Small Multidrug Resistance protein V429_10805 PF01118 Semialdehyde dehydrogenase, NAD binding domain V429_10805 PF02774 Semialdehyde dehydrogenase, dimerisation domain V429_10810 PF00675 Insulinase (Peptidase family M16) V429_10810 PF05193 Peptidase M16 inactive domain V429_10815 PF01053 Cys/Met metabolism PLP-dependent enzyme V429_10825 PF13460 NAD(P)H-binding V429_10830 PF03466 LysR substrate binding domain V429_10830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10835 PF00106 short chain dehydrogenase V429_10840 PF12833 Helix-turn-helix domain V429_10845 PF07715 TonB-dependent Receptor Plug Domain V429_10845 PF00593 TonB dependent receptor V429_10855 PF03466 LysR substrate binding domain V429_10855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_10860 PF01717 Cobalamin-independent synthase, Catalytic domain V429_10860 PF08267 Cobalamin-independent synthase, N-terminal domain V429_10870 PF00571 CBS domain V429_10870 PF00478 IMP dehydrogenase / GMP reductase domain V429_10875 PF07969 Amidohydrolase family V429_10885 PF01266 FAD dependent oxidoreductase V429_10890 PF04244 Deoxyribodipyrimidine photo-lyase-related protein V429_10900 PF01212 Beta-eliminating lyase V429_10905 PF00768 D-alanyl-D-alanine carboxypeptidase V429_10910 PF00293 NUDIX domain V429_10920 PF08534 Redoxin V429_10925 PF01578 Cytochrome C assembly protein V429_10925 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal V429_10930 PF03916 Polysulphide reductase, NrfD V429_10935 PF13247 4Fe-4S dicluster domain V429_10935 PF00037 4Fe-4S binding domain V429_10940 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V429_10940 PF13435 Cytochrome c554 and c-prime V429_10945 PF02335 Cytochrome c552 V429_10960 PF02754 Cysteine-rich domain V429_10960 PF13183 4Fe-4S dicluster domain V429_10965 PF00890 FAD binding domain V429_10970 PF01266 FAD dependent oxidoreductase V429_10970 PF04324 BFD-like [2Fe-2S] binding domain V429_10975 PF02810 SEC-C motif V429_10980 PF00672 HAMP domain V429_10980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_10980 PF17200 Single Cache domain 2 V429_10985 PF01047 MarR family V429_10985 PF00480 ROK family V429_10990 PF17203 Single cache domain 3 V429_10990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_10990 PF00989 PAS fold V429_10990 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain V429_10995 PF00072 Response regulator receiver domain V429_10995 PF08279 HTH domain V429_10995 PF12431 Transcriptional regulator V429_11000 PF01970 Tripartite tricarboxylate transporter TctA family V429_11015 PF01464 Transglycosylase SLT domain V429_11015 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_11020 PF06826 Predicted Permease Membrane Region V429_11020 PF02080 TrkA-C domain V429_11030 PF17757 UvrB interaction domain V429_11030 PF02151 UvrB/uvrC motif V429_11030 PF12344 Ultra-violet resistance protein B V429_11030 PF04851 Type III restriction enzyme, res subunit V429_11030 PF00271 Helicase conserved C-terminal domain V429_11040 PF09335 SNARE associated Golgi protein V429_11045 PF02600 Disulfide bond formation protein DsbB V429_11050 PF06450 Bacterial Na+/H+ antiporter B (NhaB) V429_11055 PF00392 Bacterial regulatory proteins, gntR family V429_11055 PF07840 FadR C-terminal domain V429_11060 PF04293 SpoVR like protein V429_11065 PF04285 Protein of unknown function (DUF444) V429_11070 PF08298 PrkA AAA domain V429_11070 PF06798 PrkA serine protein kinase C-terminal domain V429_11075 PF00271 Helicase conserved C-terminal domain V429_11075 PF09382 RQC domain V429_11075 PF16124 RecQ zinc-binding V429_11075 PF00570 HRDC domain V429_11075 PF00270 DEAD/DEAH box helicase V429_11080 PF00375 Sodium:dicarboxylate symporter family V429_11085 PF03222 Tryptophan/tyrosine permease family V429_11090 PF00293 NUDIX domain V429_11095 PF04715 Anthranilate synthase component I, N terminal region V429_11095 PF00425 chorismate binding enzyme V429_11120 PF00343 Carbohydrate phosphorylase V429_11125 PF00939 Sodium:sulfate symporter transmembrane region V429_11130 PF00085 Thioredoxin V429_11135 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V429_11135 PF01627 Hpt domain V429_11135 PF00512 His Kinase A (phospho-acceptor) domain V429_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_11135 PF00072 Response regulator receiver domain V429_11135 PF00672 HAMP domain V429_11140 PF00664 ABC transporter transmembrane region V429_11140 PF00005 ABC transporter V429_11150 PF00664 ABC transporter transmembrane region V429_11150 PF00005 ABC transporter V429_11170 PF01575 MaoC like domain V429_11175 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus V429_11175 PF00561 alpha/beta hydrolase fold V429_11210 PF08543 Phosphomethylpyrimidine kinase V429_11215 PF03992 Antibiotic biosynthesis monooxygenase V429_11220 PF00465 Iron-containing alcohol dehydrogenase V429_11225 PF00583 Acetyltransferase (GNAT) family V429_11235 PF01928 CYTH domain V429_11245 PF02694 Uncharacterised BCR, YnfA/UPF0060 family V429_11255 PF13673 Acetyltransferase (GNAT) domain V429_11260 PF00270 DEAD/DEAH box helicase V429_11260 PF00271 Helicase conserved C-terminal domain V429_11265 PF00255 Glutathione peroxidase V429_11275 PF07478 D-ala D-ala ligase C-terminus V429_11275 PF01820 D-ala D-ala ligase N-terminus V429_11280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_11280 PF18029 Glyoxalase-like domain V429_11295 PF01925 Sulfite exporter TauE/SafE V429_11300 PF03466 LysR substrate binding domain V429_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_11310 PF14525 AraC-binding-like domain V429_11310 PF12833 Helix-turn-helix domain V429_11315 PF11398 Protein of unknown function (DUF2813) V429_11325 PF00128 Alpha amylase, catalytic domain V429_11325 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V429_11365 PF00883 Cytosol aminopeptidase family, catalytic domain V429_11365 PF02789 Cytosol aminopeptidase family, N-terminal domain V429_11370 PF13419 Haloacid dehalogenase-like hydrolase V429_11375 PF01546 Peptidase family M20/M25/M40 V429_11375 PF07687 Peptidase dimerisation domain V429_11380 PF00365 Phosphofructokinase V429_11385 PF00121 Triosephosphate isomerase V429_11390 PF02698 DUF218 domain V429_11400 PF17192 MukF middle domain V429_11400 PF03882 MukF winged-helix domain V429_11400 PF17193 MukF C-terminal domain V429_11405 PF04288 MukE-like family V429_11410 PF04310 MukB N-terminal V429_11410 PF16330 MukB hinge domain V429_11415 PF05036 Sporulation related domain V429_11415 PF03330 Lytic transglycolase V429_11430 PF01327 Polypeptide deformylase V429_11445 PF02567 Phenazine biosynthesis-like protein V429_11465 PF03831 PhnA domain V429_11465 PF08274 PhnA Zinc-Ribbon V429_11480 PF00704 Glycosyl hydrolases family 18 V429_11480 PF08329 Chitinase A, N-terminal domain V429_11495 PF00300 Histidine phosphatase superfamily (branch 1) V429_11500 PF00990 Diguanylate cyclase, GGDEF domain V429_11500 PF08448 PAS fold V429_11510 PF01713 Smr domain V429_11515 PF05175 Methyltransferase small domain V429_11520 PF01264 Chorismate synthase V429_11530 PF00271 Helicase conserved C-terminal domain V429_11530 PF00270 DEAD/DEAH box helicase V429_11545 PF03222 Tryptophan/tyrosine permease family V429_11550 PF00356 Bacterial regulatory proteins, lacI family V429_11550 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_11555 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_11555 PF00381 PTS HPr component phosphorylation site V429_11560 PF00294 pfkB family carbohydrate kinase V429_11565 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit V429_11565 PF02378 Phosphotransferase system, EIIC V429_11570 PF06560 Glucose-6-phosphate isomerase (GPI) V429_11575 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_11575 PF00356 Bacterial regulatory proteins, lacI family V429_11590 PF03830 PTS system sorbose subfamily IIB component V429_11590 PF03610 PTS system fructose IIA component V429_11595 PF03609 PTS system sorbose-specific iic component V429_11600 PF03613 PTS system mannose/fructose/sorbose family IID component V429_11610 PF06945 Protein of unknown function (DUF1289) V429_11615 PF03562 MltA specific insert domain V429_11615 PF06725 3D domain V429_11620 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_11625 PF00268 Ribonucleotide reductase, small chain V429_11630 PF00317 Ribonucleotide reductase, all-alpha domain V429_11630 PF02867 Ribonucleotide reductase, barrel domain V429_11630 PF03477 ATP cone domain V429_11635 PF13419 Haloacid dehalogenase-like hydrolase V429_11645 PF03989 DNA gyrase C-terminal domain, beta-propeller V429_11645 PF00521 DNA gyrase/topoisomerase IV, subunit A V429_11655 PF04055 Radical SAM superfamily V429_11665 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V429_11665 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V429_11665 PF03129 Anticodon binding domain V429_11665 PF02824 TGS domain V429_11670 PF05198 Translation initiation factor IF-3, N-terminal domain V429_11670 PF00707 Translation initiation factor IF-3, C-terminal domain V429_11675 PF01632 Ribosomal protein L35 V429_11680 PF00453 Ribosomal protein L20 V429_11685 PF01409 tRNA synthetases class II core domain (F) V429_11685 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain V429_11690 PF03147 Ferredoxin-fold anticodon binding domain V429_11690 PF01588 Putative tRNA binding domain V429_11690 PF03484 tRNA synthetase B5 domain V429_11690 PF03483 B3/4 domain V429_11690 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain V429_11695 PF00216 Bacterial DNA-binding protein V429_11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_11700 PF00072 Response regulator receiver domain V429_11700 PF00512 His Kinase A (phospho-acceptor) domain V429_11700 PF09456 RcsC Alpha-Beta-Loop (ABL) V429_11715 PF02146 Sir2 family V429_11730 PF00356 Bacterial regulatory proteins, lacI family V429_11735 PF00294 pfkB family carbohydrate kinase V429_11740 PF13407 Periplasmic binding protein domain V429_11745 PF02653 Branched-chain amino acid transport system / permease component V429_11750 PF00005 ABC transporter V429_11755 PF05025 RbsD / FucU transport protein family V429_11760 PF02798 Glutathione S-transferase, N-terminal domain V429_11760 PF14497 Glutathione S-transferase, C-terminal domain V429_11775 PF01171 PP-loop family V429_11780 PF00582 Universal stress protein family V429_11785 PF00027 Cyclic nucleotide-binding domain V429_11785 PF13545 Crp-like helix-turn-helix domain V429_11800 PF00403 Heavy-metal-associated domain V429_11810 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP V429_11810 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V429_11825 PF00115 Cytochrome C and Quinol oxidase polypeptide I V429_11835 PF13185 GAF domain V429_11840 PF17516 ProQ C-terminal domain V429_11840 PF04352 ProQ/FINO family V429_11845 PF11818 C-terminal domain of tail specific protease (DUF3340) V429_11845 PF00595 PDZ domain V429_11845 PF03572 Peptidase family S41 V429_11845 PF17804 Tail specific protease N-terminal domain V429_11850 PF01433 Peptidase family M1 domain V429_11850 PF17432 Domain of unknown function (DUF3458_C) ARM repeats V429_11850 PF11940 Domain of unknown function (DUF3458) Ig-like fold V429_11860 PF05088 Bacterial NAD-glutamate dehydrogenase V429_11865 PF01180 Dihydroorotate dehydrogenase V429_11870 PF07126 Cell-division protein ZapC V429_11875 PF01170 Putative RNA methylase family UPF0020 V429_11875 PF10672 S-adenosylmethionine-dependent methyltransferase V429_11875 PF02926 THUMP domain V429_11885 PF00005 ABC transporter V429_11885 PF16326 ABC transporter C-terminal domain V429_11885 PF12848 ABC transporter V429_11895 PF04957 Ribosome modulation factor V429_11900 PF07977 FabA-like domain V429_11905 PF13654 AAA domain V429_11905 PF05362 Lon protease (S16) C-terminal proteolytic domain V429_11915 PF07130 YebG protein V429_11925 PF00106 short chain dehydrogenase V429_11950 PF06974 Protein of unknown function (DUF1298) V429_11950 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain V429_11965 PF03972 MmgE/PrpD family V429_11970 PF00285 Citrate synthase, C-terminal domain V429_11985 PF04403 Paraquat-inducible protein A V429_11990 PF02470 MlaD protein V429_11995 PF01189 16S rRNA methyltransferase RsmB/F V429_11995 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF V429_11995 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF V429_12005 PF00589 Phage integrase family V429_12010 PF01026 TatD related DNase V429_12015 PF09115 DNA polymerase III, delta subunit, C terminal V429_12020 PF02223 Thymidylate kinase V429_12025 PF02618 YceG-like family V429_12030 PF01063 Amino-transferase class IV V429_12035 PF00109 Beta-ketoacyl synthase, N-terminal domain V429_12035 PF02801 Beta-ketoacyl synthase, C-terminal domain V429_12040 PF00550 Phosphopantetheine attachment site V429_12050 PF00698 Acyl transferase domain V429_12055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V429_12055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V429_12060 PF02504 Fatty acid synthesis protein V429_12065 PF01783 Ribosomal L32p protein family V429_12070 PF02620 Large ribosomal RNA subunit accumulation protein YceD V429_12080 PF03466 LysR substrate binding domain V429_12080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_12085 PF07690 Major Facilitator Superfamily V429_12090 PF02545 Maf-like protein V429_12100 PF00849 RNA pseudouridylate synthase V429_12100 PF01479 S4 domain V429_12105 PF00575 S1 RNA binding domain V429_12105 PF12111 Polyribonucleotide phosphorylase C terminal V429_12105 PF10150 Ribonuclease E/G family V429_12110 PF01384 Phosphate transporter family V429_12115 PF00692 dUTPase V429_12120 PF00485 Phosphoribulokinase / Uridine kinase family V429_12125 PF10609 NUBPL iron-transfer P-loop NTPase V429_12130 PF01588 Putative tRNA binding domain V429_12130 PF08264 Anticodon-binding domain of tRNA V429_12130 PF09334 tRNA synthetases class I (M) V429_12135 PF02798 Glutathione S-transferase, N-terminal domain V429_12135 PF00043 Glutathione S-transferase, C-terminal domain V429_12140 PF00708 Acylphosphatase V429_12145 PF12729 Four helix bundle sensory module for signal transduction V429_12145 PF00672 HAMP domain V429_12145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_12150 PF10672 S-adenosylmethionine-dependent methyltransferase V429_12150 PF17785 PUA-like domain V429_12175 PF00586 AIR synthase related protein, N-terminal domain V429_12175 PF02769 AIR synthase related protein, C-terminal domain V429_12185 PF00753 Metallo-beta-lactamase superfamily V429_12190 PF00072 Response regulator receiver domain V429_12195 PF00072 Response regulator receiver domain V429_12195 PF01627 Hpt domain V429_12195 PF00512 His Kinase A (phospho-acceptor) domain V429_12195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) V429_12195 PF00672 HAMP domain V429_12195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_12200 PF01386 Ribosomal L25p family V429_12210 PF00270 DEAD/DEAH box helicase V429_12210 PF11898 Domain of unknown function (DUF3418) V429_12210 PF04408 Helicase associated domain (HA2) V429_12210 PF00271 Helicase conserved C-terminal domain V429_12210 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold V429_12225 PF00072 Response regulator receiver domain V429_12225 PF00196 Bacterial regulatory proteins, luxR family V429_12240 PF02575 YbaB/EbfC DNA-binding family V429_12245 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding V429_12245 PF12169 DNA polymerase III subunits gamma and tau domain III V429_12245 PF12170 DNA polymerase III tau subunit V interacting with alpha V429_12250 PF00156 Phosphoribosyl transferase domain V429_12255 PF04304 Protein of unknown function (DUF454) V429_12260 PF01207 Dihydrouridine synthase (Dus) V429_12270 PF07508 Recombinase V429_12270 PF00239 Resolvase, N terminal domain V429_12270 PF13408 Recombinase zinc beta ribbon domain V429_12280 PF00239 Resolvase, N terminal domain V429_12280 PF02796 Helix-turn-helix domain of resolvase V429_12395 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_12400 PF01612 3'-5' exonuclease V429_12400 PF00570 HRDC domain V429_12405 PF00501 AMP-binding enzyme V429_12405 PF13193 AMP-binding enzyme C-terminal domain V429_12410 PF08241 Methyltransferase domain V429_12410 PF12697 Alpha/beta hydrolase family V429_12420 PF00814 Glycoprotease family V429_12425 PF13307 Helicase C-terminal domain V429_12425 PF04851 Type III restriction enzyme, res subunit V429_12435 PF08029 HisG, C-terminal domain V429_12435 PF01634 ATP phosphoribosyltransferase V429_12440 PF00815 Histidinol dehydrogenase V429_12445 PF00155 Aminotransferase class I and II V429_12450 PF08645 Polynucleotide kinase 3 phosphatase V429_12450 PF00475 Imidazoleglycerol-phosphate dehydratase V429_12455 PF00117 Glutamine amidotransferase class-I V429_12460 PF00977 Histidine biosynthesis protein V429_12465 PF00072 Response regulator receiver domain V429_12475 PF00072 Response regulator receiver domain V429_12475 PF01627 Hpt domain V429_12475 PF00512 His Kinase A (phospho-acceptor) domain V429_12475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_12480 PF00977 Histidine biosynthesis protein V429_12485 PF01502 Phosphoribosyl-AMP cyclohydrolase V429_12485 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase V429_12490 PF13193 AMP-binding enzyme C-terminal domain V429_12490 PF00501 AMP-binding enzyme V429_12495 PF03606 C4-dicarboxylate anaerobic carrier V429_12505 PF05433 Glycine zipper 2TM domain V429_12515 PF01799 [2Fe-2S] binding domain V429_12515 PF00111 2Fe-2S iron-sulfur cluster binding domain V429_12520 PF03450 CO dehydrogenase flavoprotein C-terminal domain V429_12520 PF00941 FAD binding domain in molybdopterin dehydrogenase V429_12525 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V429_12525 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V429_12530 PF00860 Permease family V429_12535 PF01979 Amidohydrolase family V429_12540 PF00860 Permease family V429_12545 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain V429_12545 PF01799 [2Fe-2S] binding domain V429_12545 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase V429_12550 PF00941 FAD binding domain in molybdopterin dehydrogenase V429_12555 PF01979 Amidohydrolase family V429_12560 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V429_12560 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_12570 PF12804 MobA-like NTP transferase domain V429_12585 PF02625 XdhC and CoxI family V429_12585 PF13478 XdhC Rossmann domain V429_12590 PF00892 EamA-like transporter family V429_12600 PF00696 Amino acid kinase family V429_12605 PF01979 Amidohydrolase family V429_12610 PF07687 Peptidase dimerisation domain V429_12610 PF01546 Peptidase family M20/M25/M40 V429_12615 PF00291 Pyridoxal-phosphate dependent enzyme V429_12620 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V429_12620 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V429_12630 PF10123 Mu-like prophage I protein V429_12650 PF06074 Protein of unknown function (DUF935) V429_12660 PF07152 YaeQ protein V429_12670 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain V429_12670 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain V429_12670 PF00378 Enoyl-CoA hydratase/isomerase V429_12675 PF00108 Thiolase, N-terminal domain V429_12675 PF02803 Thiolase, C-terminal domain V429_12680 PF07726 ATPase family associated with various cellular activities (AAA) V429_12680 PF17863 AAA lid domain V429_12685 PF01882 Protein of unknown function DUF58 V429_12710 PF08281 Sigma-70, region 4 V429_12710 PF04542 Sigma-70 region 2 V429_12720 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) V429_12730 PF00563 EAL domain V429_12730 PF08668 HDOD domain V429_12735 PF02803 Thiolase, C-terminal domain V429_12735 PF00108 Thiolase, N-terminal domain V429_12740 PF09278 MerR, DNA binding V429_12740 PF00376 MerR family regulatory protein V429_12745 PF00375 Sodium:dicarboxylate symporter family V429_12750 PF06865 Pyrimidine/purine nucleoside phosphorylase V429_12755 PF03315 Serine dehydratase beta chain V429_12755 PF03313 Serine dehydratase alpha chain V429_12760 PF03313 Serine dehydratase alpha chain V429_12760 PF03315 Serine dehydratase beta chain V429_12765 PF13406 Transglycosylase SLT domain V429_12770 PF05166 YcgL domain V429_12775 PF05209 Septum formation inhibitor MinC, N-terminal domain V429_12775 PF03775 Septum formation inhibitor MinC, C-terminal domain V429_12780 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain V429_12785 PF03776 Septum formation topological specificity factor MinE V429_12790 PF04269 Protein of unknown function, DUF440 V429_12795 PF00912 Transglycosylase V429_12800 PF04269 Protein of unknown function, DUF440 V429_12810 PF13509 S1 domain V429_12810 PF17783 CvfB-like winged helix domain V429_12835 PF02525 Flavodoxin-like fold V429_12840 PF00892 EamA-like transporter family V429_12845 PF01370 NAD dependent epimerase/dehydratase family V429_12845 PF02222 ATP-grasp domain V429_12850 PF13419 Haloacid dehalogenase-like hydrolase V429_12860 PF00677 Lumazine binding domain V429_12865 PF06786 Uncharacterised protein family (UPF0253) V429_12870 PF01554 MatE V429_12890 PF03104 DNA polymerase family B, exonuclease domain V429_12890 PF00136 DNA polymerase family B V429_12900 PF17151 Periplasmic sensor domain V429_12900 PF00990 Diguanylate cyclase, GGDEF domain V429_12915 PF03279 Bacterial lipid A biosynthesis acyltransferase V429_12920 PF03279 Bacterial lipid A biosynthesis acyltransferase V429_12930 PF03466 LysR substrate binding domain V429_12930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_12935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V429_12935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V429_12940 PF01261 Xylose isomerase-like TIM barrel V429_12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_12945 PF03466 LysR substrate binding domain V429_12955 PF01966 HD domain V429_12970 PF03707 Bacterial signalling protein N terminal repeat V429_12970 PF13188 PAS domain V429_12970 PF00990 Diguanylate cyclase, GGDEF domain V429_12970 PF00563 EAL domain V429_12975 PF00232 Glycosyl hydrolase family 1 V429_12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_12980 PF03466 LysR substrate binding domain V429_12985 PF00990 Diguanylate cyclase, GGDEF domain V429_12985 PF07694 5TMR of 5TMR-LYT V429_12990 PF00248 Aldo/keto reductase family V429_13000 PF00248 Aldo/keto reductase family V429_13005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_13005 PF03466 LysR substrate binding domain V429_13015 PF00326 Prolyl oligopeptidase family V429_13015 PF07676 WD40-like Beta Propeller Repeat V429_13015 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region V429_13020 PF12146 Serine aminopeptidase, S33 V429_13025 PF03466 LysR substrate binding domain V429_13025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_13035 PF00239 Resolvase, N terminal domain V429_13035 PF02796 Helix-turn-helix domain of resolvase V429_13055 PF04002 RadC-like JAB domain V429_13080 PF00563 EAL domain V429_13080 PF00990 Diguanylate cyclase, GGDEF domain V429_13080 PF08448 PAS fold V429_13105 PF01925 Sulfite exporter TauE/SafE V429_13110 PF13520 Amino acid permease V429_13120 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase V429_13120 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase V429_13125 PF00378 Enoyl-CoA hydratase/isomerase V429_13130 PF00378 Enoyl-CoA hydratase/isomerase V429_13135 PF02770 Acyl-CoA dehydrogenase, middle domain V429_13135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V429_13135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V429_13140 PF00171 Aldehyde dehydrogenase family V429_13145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain V429_13145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain V429_13145 PF02770 Acyl-CoA dehydrogenase, middle domain V429_13150 PF01039 Carboxyl transferase domain V429_13155 PF00378 Enoyl-CoA hydratase/isomerase V429_13160 PF00289 Biotin carboxylase, N-terminal domain V429_13160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V429_13160 PF02785 Biotin carboxylase C-terminal domain V429_13160 PF00364 Biotin-requiring enzyme V429_13165 PF00682 HMGL-like V429_13170 PF00376 MerR family regulatory protein V429_13170 PF09278 MerR, DNA binding V429_13190 PF01184 GPR1/FUN34/yaaH family V429_13195 PF06167 Glucose-regulated metallo-peptidase M90 V429_13205 PF01235 Sodium:alanine symporter family V429_13250 PF00378 Enoyl-CoA hydratase/isomerase V429_13265 PF04341 Protein of unknown function, DUF485 V429_13270 PF00474 Sodium:solute symporter family V429_13275 PF12848 ABC transporter V429_13275 PF00005 ABC transporter V429_13280 PF13145 PPIC-type PPIASE domain V429_13285 PF00216 Bacterial DNA-binding protein V429_13290 PF00004 ATPase family associated with various cellular activities (AAA) V429_13290 PF05362 Lon protease (S16) C-terminal proteolytic domain V429_13290 PF02190 ATP-dependent protease La (LON) substrate-binding domain V429_13295 PF10431 C-terminal, D2-small domain, of ClpB protein V429_13295 PF06689 ClpX C4-type zinc finger V429_13295 PF07724 AAA domain (Cdc48 subfamily) V429_13300 PF00574 Clp protease V429_13305 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_13305 PF05698 Bacterial trigger factor protein (TF) C-terminus V429_13305 PF05697 Bacterial trigger factor protein (TF) V429_13320 PF12704 MacB-like periplasmic core domain V429_13320 PF02687 FtsX-like permease family V429_13325 PF00005 ABC transporter V429_13330 PF02687 FtsX-like permease family V429_13330 PF12704 MacB-like periplasmic core domain V429_13340 PF03461 TRCF domain V429_13340 PF00271 Helicase conserved C-terminal domain V429_13340 PF02559 CarD-like/TRCF domain V429_13340 PF17757 UvrB interaction domain V429_13340 PF00270 DEAD/DEAH box helicase V429_13345 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain V429_13350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_13355 PF00892 EamA-like transporter family V429_13365 PF00300 Histidine phosphatase superfamily (branch 1) V429_13370 PF05193 Peptidase M16 inactive domain V429_13370 PF00675 Insulinase (Peptidase family M16) V429_13375 PF05724 Thiopurine S-methyltransferase (TPMT) V429_13390 PF02805 Metal binding domain of Ada V429_13390 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain V429_13390 PF12833 Helix-turn-helix domain V429_13390 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain V429_13465 PF13356 Arm DNA-binding domain V429_13465 PF00589 Phage integrase family V429_13470 PF00117 Glutamine amidotransferase class-I V429_13470 PF00958 GMP synthase C terminal domain V429_13470 PF02540 NAD synthase V429_13475 PF00478 IMP dehydrogenase / GMP reductase domain V429_13475 PF00571 CBS domain V429_13480 PF02705 K+ potassium transporter V429_13490 PF01618 MotA/TolQ/ExbB proton channel family V429_13495 PF02472 Biopolymer transport protein ExbD/TolR V429_13500 PF00892 EamA-like transporter family V429_13505 PF02601 Exonuclease VII, large subunit V429_13505 PF13742 OB-fold nucleic acid binding domain V429_13510 PF04055 Radical SAM superfamily V429_13515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_13515 PF00672 HAMP domain V429_13520 PF00793 DAHP synthetase I family V429_13525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V429_13530 PF00266 Aminotransferase class-V V429_13535 PF00766 Electron transfer flavoprotein FAD-binding domain V429_13535 PF01012 Electron transfer flavoprotein domain V429_13545 PF01012 Electron transfer flavoprotein domain V429_13555 PF01544 CorA-like Mg2+ transporter protein V429_13560 PF11143 Protein of unknown function (DUF2919) V429_13575 PF00593 TonB dependent receptor V429_13575 PF07715 TonB-dependent Receptor Plug Domain V429_13580 PF01032 FecCD transport family V429_13585 PF01032 FecCD transport family V429_13590 PF00005 ABC transporter V429_13595 PF17837 4'-phosphopantetheinyl transferase N-terminal domain V429_13595 PF01648 4'-phosphopantetheinyl transferase superfamily V429_13600 PF01497 Periplasmic binding protein V429_13605 PF00975 Thioesterase domain V429_13605 PF00550 Phosphopantetheine attachment site V429_13605 PF00668 Condensation domain V429_13605 PF13193 AMP-binding enzyme C-terminal domain V429_13605 PF00501 AMP-binding enzyme V429_13610 PF00668 Condensation domain V429_13610 PF13193 AMP-binding enzyme C-terminal domain V429_13610 PF00501 AMP-binding enzyme V429_13610 PF00550 Phosphopantetheine attachment site V429_13610 PF07993 Male sterility protein V429_13620 PF00975 Thioesterase domain V429_13620 PF00550 Phosphopantetheine attachment site V429_13620 PF00501 AMP-binding enzyme V429_13620 PF13193 AMP-binding enzyme C-terminal domain V429_13620 PF00668 Condensation domain V429_13625 PF00857 Isochorismatase family V429_13625 PF00550 Phosphopantetheine attachment site V429_13630 PF13193 AMP-binding enzyme C-terminal domain V429_13630 PF00501 AMP-binding enzyme V429_13635 PF00425 chorismate binding enzyme V429_13640 PF07273 Protein of unknown function (DUF1439) V429_13650 PF00483 Nucleotidyl transferase V429_13670 PF00294 pfkB family carbohydrate kinase V429_13680 PF00762 Ferrochelatase V429_13685 PF05191 Adenylate kinase, active site lid V429_13690 PF00183 Hsp90 protein V429_13690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_13695 PF02132 RecR protein V429_13695 PF13662 Toprim domain V429_13700 PF02634 FdhD/NarQ family V429_13705 PF00158 Sigma-54 interaction domain V429_13705 PF01590 GAF domain V429_13705 PF02954 Bacterial regulatory protein, Fis family V429_13715 PF00384 Molybdopterin oxidoreductase V429_13715 PF01568 Molydopterin dinucleotide binding domain V429_13715 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_13720 PF01568 Molydopterin dinucleotide binding domain V429_13720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_13720 PF00384 Molybdopterin oxidoreductase V429_13725 PF12800 4Fe-4S binding domain V429_13725 PF13247 4Fe-4S dicluster domain V429_13730 PF02705 K+ potassium transporter V429_13735 PF12798 4Fe-4S binding domain V429_13735 PF00037 4Fe-4S binding domain V429_13740 PF00361 Proton-conducting membrane transporter V429_13745 PF00146 NADH dehydrogenase V429_13750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit V429_13750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit V429_13750 PF00374 Nickel-dependent hydrogenase V429_13755 PF12838 4Fe-4S dicluster domain V429_13760 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V429_13765 PF07450 Formate hydrogenlyase maturation protein HycH V429_13770 PF01750 Hydrogenase maturation protease V429_13780 PF12390 Selenocysteine synthase N terminal V429_13780 PF03841 L-seryl-tRNA selenium transferase V429_13785 PF00009 Elongation factor Tu GTP binding domain V429_13785 PF09107 Elongation factor SelB, winged helix V429_13785 PF09105 Elongation factor SelB, winged helix V429_13785 PF09106 Elongation factor SelB, winged helix V429_13785 PF03144 Elongation factor Tu domain 2 V429_13790 PF17788 HypF Kae1-like domain V429_13790 PF01300 Telomere recombination V429_13790 PF07503 HypF finger V429_13790 PF00708 Acylphosphatase V429_13795 PF01455 HupF/HypC family V429_13800 PF01924 Hydrogenase formation hypA family V429_13805 PF02769 AIR synthase related protein, C-terminal domain V429_13805 PF00586 AIR synthase related protein, N-terminal domain V429_13810 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA V429_13820 PF02492 CobW/HypB/UreG, nucleotide-binding domain V429_13825 PF00005 ABC transporter V429_13825 PF08402 TOBE domain V429_13830 PF00005 ABC transporter V429_13830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_13835 PF00528 Binding-protein-dependent transport system inner membrane component V429_13835 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_13840 PF00528 Binding-protein-dependent transport system inner membrane component V429_13845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_13850 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE V429_13855 PF01750 Hydrogenase maturation protease V429_13860 PF00374 Nickel-dependent hydrogenase V429_13865 PF03916 Polysulphide reductase, NrfD V429_13870 PF13247 4Fe-4S dicluster domain V429_13875 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal V429_13875 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit V429_13880 PF00072 Response regulator receiver domain V429_13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_13890 PF01584 CheW-like domain V429_13890 PF01627 Hpt domain V429_13890 PF09078 CheY binding V429_13890 PF02895 Signal transducing histidine kinase, homodimeric domain V429_13895 PF17202 Single cache domain 3 V429_13895 PF00672 HAMP domain V429_13895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_13900 PF01584 CheW-like domain V429_13905 PF03705 CheR methyltransferase, all-alpha domain V429_13905 PF01739 CheR methyltransferase, SAM binding domain V429_13910 PF00072 Response regulator receiver domain V429_13910 PF01339 CheB methylesterase V429_13915 PF00990 Diguanylate cyclase, GGDEF domain V429_13915 PF03707 Bacterial signalling protein N terminal repeat V429_13915 PF00563 EAL domain V429_13920 PF00672 HAMP domain V429_13920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_13920 PF12729 Four helix bundle sensory module for signal transduction V429_13925 PF01168 Alanine racemase, N-terminal domain V429_13925 PF00842 Alanine racemase, C-terminal domain V429_13940 PF00665 Integrase core domain V429_13940 PF13276 HTH-like domain V429_13940 PF13333 Integrase core domain V429_13950 PF01527 Transposase V429_13960 PF01527 Transposase V429_14015 PF00916 Sulfate permease family V429_14015 PF01740 STAS domain V429_14030 PF03350 Uncharacterized protein family, UPF0114 V429_14045 PF03239 Iron permease FTR1 family V429_14050 PF01593 Flavin containing amine oxidoreductase V429_14065 PF07690 Major Facilitator Superfamily V429_14075 PF00005 ABC transporter V429_14090 PF02913 FAD linked oxidases, C-terminal domain V429_14090 PF01565 FAD binding domain V429_14095 PF02589 LUD domain V429_14100 PF02589 LUD domain V429_14100 PF11870 Domain of unknown function (DUF3390) V429_14100 PF13183 4Fe-4S dicluster domain V429_14105 PF02754 Cysteine-rich domain V429_14110 PF02652 L-lactate permease V429_14115 PF03466 LysR substrate binding domain V429_14115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_14125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_14130 PF00561 alpha/beta hydrolase fold V429_14155 PF01625 Peptide methionine sulfoxide reductase V429_14160 PF00583 Acetyltransferase (GNAT) family V429_14160 PF00696 Amino acid kinase family V429_14165 PF01842 ACT domain V429_14165 PF00696 Amino acid kinase family V429_14175 PF00884 Sulfatase V429_14180 PF02016 LD-carboxypeptidase N-terminal domain V429_14180 PF17676 LD-carboxypeptidase C-terminal domain V429_14185 PF01734 Patatin-like phospholipase V429_14190 PF17179 4Fe-4S dicluster domain V429_14195 PF00175 Oxidoreductase NAD-binding domain V429_14195 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B V429_14200 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V429_14200 PF13187 4Fe-4S dicluster domain V429_14200 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V429_14205 PF14824 Sirohaem biosynthesis protein central V429_14205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V429_14205 PF10414 Sirohaem synthase dimerisation region V429_14215 PF01906 Putative heavy-metal-binding V429_14235 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_14240 PF05728 Uncharacterised protein family (UPF0227) V429_14245 PF00860 Permease family V429_14250 PF01432 Peptidase family M3 V429_14250 PF08439 Oligopeptidase F V429_14255 PF08439 Oligopeptidase F V429_14255 PF01432 Peptidase family M3 V429_14260 PF05661 Protein of unknown function (DUF808) V429_14270 PF02355 Protein export membrane protein V429_14270 PF07549 SecD/SecF GG Motif V429_14275 PF07549 SecD/SecF GG Motif V429_14275 PF13721 SecD export protein N-terminal TM region V429_14275 PF02355 Protein export membrane protein V429_14310 PF01230 HIT domain V429_14315 PF00672 HAMP domain V429_14315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_14325 PF01979 Amidohydrolase family V429_14340 PF00375 Sodium:dicarboxylate symporter family V429_14350 PF01168 Alanine racemase, N-terminal domain V429_14350 PF00842 Alanine racemase, C-terminal domain V429_14355 PF03741 Integral membrane protein TerC family V429_14360 PF00005 ABC transporter V429_14360 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_14370 PF00005 ABC transporter V429_14370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_14375 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_14375 PF00528 Binding-protein-dependent transport system inner membrane component V429_14380 PF00528 Binding-protein-dependent transport system inner membrane component V429_14385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_14390 PF01914 MarC family integral membrane protein V429_14400 PF00465 Iron-containing alcohol dehydrogenase V429_14400 PF00171 Aldehyde dehydrogenase family V429_14405 PF01966 HD domain V429_14410 PF07694 5TMR of 5TMR-LYT V429_14410 PF06580 Histidine kinase V429_14415 PF04397 LytTr DNA-binding domain V429_14415 PF00072 Response regulator receiver domain V429_14420 PF02554 Carbon starvation protein CstA V429_14425 PF11742 Protein of unknown function (DUF3302) V429_14430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_14430 PF00529 HlyD membrane-fusion protein of T1SS V429_14435 PF04851 Type III restriction enzyme, res subunit V429_14435 PF00271 Helicase conserved C-terminal domain V429_14440 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family V429_14445 PF00462 Glutaredoxin V429_14455 PF00155 Aminotransferase class I and II V429_14460 PF03606 C4-dicarboxylate anaerobic carrier V429_14465 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase V429_14465 PF07055 Enoyl reductase FAD binding domain V429_14465 PF12241 Trans-2-enoyl-CoA reductase catalytic region V429_14470 PF13426 PAS domain V429_14470 PF08447 PAS fold V429_14470 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_14480 PF00892 EamA-like transporter family V429_14485 PF02508 Rnf-Nqr subunit, membrane protein V429_14490 PF04060 Putative Fe-S cluster V429_14495 PF12838 4Fe-4S dicluster domain V429_14495 PF13375 RnfC Barrel sandwich hybrid domain V429_14495 PF10531 SLBB domain V429_14495 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit V429_14500 PF03116 NQR2, RnfD, RnfE family V429_14505 PF04205 FMN-binding domain V429_14510 PF02508 Rnf-Nqr subunit, membrane protein V429_14515 PF00633 Helix-hairpin-helix motif V429_14515 PF00730 HhH-GPD superfamily base excision DNA repair protein V429_14515 PF10576 Iron-sulfur binding domain of endonuclease III V429_14520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_14525 PF00691 OmpA family V429_14525 PF18393 MotY N-terminal domain V429_14530 PF00672 HAMP domain V429_14530 PF12729 Four helix bundle sensory module for signal transduction V429_14530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_14535 PF00929 Exonuclease V429_14540 PF13726 Na+-H+ antiporter family V429_14540 PF03553 Na+/H+ antiporter family V429_14545 PF00270 DEAD/DEAH box helicase V429_14545 PF00271 Helicase conserved C-terminal domain V429_14545 PF03880 DbpA RNA binding domain V429_14550 PF03061 Thioesterase superfamily V429_14560 PF02913 FAD linked oxidases, C-terminal domain V429_14560 PF01565 FAD binding domain V429_14560 PF13183 4Fe-4S dicluster domain V429_14570 PF03741 Integral membrane protein TerC family V429_14570 PF03471 Transporter associated domain V429_14575 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V429_14580 PF00962 Adenosine/AMP deaminase V429_14585 PF13344 Haloacid dehalogenase-like hydrolase V429_14590 PF00999 Sodium/hydrogen exchanger family V429_14590 PF02254 TrkA-N domain V429_14600 PF00733 Asparagine synthase V429_14600 PF13537 Glutamine amidotransferase domain V429_14610 PF13417 Glutathione S-transferase, N-terminal domain V429_14610 PF00043 Glutathione S-transferase, C-terminal domain V429_14615 PF14497 Glutathione S-transferase, C-terminal domain V429_14615 PF02798 Glutathione S-transferase, N-terminal domain V429_14625 PF04209 homogentisate 1,2-dioxygenase V429_14630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_14640 PF00849 RNA pseudouridylate synthase V429_14645 PF00563 EAL domain V429_14645 PF13426 PAS domain V429_14645 PF00990 Diguanylate cyclase, GGDEF domain V429_14650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_14650 PF08447 PAS fold V429_14660 PF09924 Uncharacterised conserved protein (DUF2156) V429_14660 PF03706 Lysylphosphatidylglycerol synthase TM region V429_14670 PF08019 Phosphoethanolamine transferase EptA/EptB V429_14670 PF00884 Sulfatase V429_14690 PF01027 Inhibitor of apoptosis-promoting Bax1 V429_14695 PF12805 FUSC-like inner membrane protein yccS V429_14700 PF04358 DsrC like protein V429_14705 PF05036 Sporulation related domain V429_14710 PF02875 Mur ligase family, glutamate ligase domain V429_14710 PF08245 Mur ligase middle domain V429_14715 PF01039 Carboxyl transferase domain V429_14715 PF17848 Acetyl-coA carboxylase zinc finger domain V429_14720 PF01416 tRNA pseudouridine synthase V429_14730 PF01118 Semialdehyde dehydrogenase, NAD binding domain V429_14730 PF02774 Semialdehyde dehydrogenase, dimerisation domain V429_14735 PF11890 Domain of unknown function (DUF3410) V429_14735 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V429_14735 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_14740 PF01569 PAP2 superfamily V429_14745 PF03180 NLPA lipoprotein V429_14750 PF07969 Amidohydrolase family V429_14780 PF01483 Proprotein convertase P-domain V429_14780 PF00082 Subtilase family V429_14790 PF00933 Glycosyl hydrolase family 3 N terminal domain V429_14790 PF01915 Glycosyl hydrolase family 3 C-terminal domain V429_14790 PF14310 Fibronectin type III-like domain V429_14800 PF00391 PEP-utilising enzyme, mobile domain V429_14800 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain V429_14800 PF02896 PEP-utilising enzyme, TIM barrel domain V429_14805 PF03618 Kinase/pyrophosphorylase V429_14815 PF00324 Amino acid permease V429_14875 PF00664 ABC transporter transmembrane region V429_14875 PF00005 ABC transporter V429_14875 PF03412 Peptidase C39 family V429_14880 PF16199 Radical_SAM C-terminal domain V429_14880 PF04055 Radical SAM superfamily V429_14890 PF01493 GXGXG motif V429_14890 PF01645 Conserved region in glutamate synthase V429_14890 PF00310 Glutamine amidotransferases class-II V429_14890 PF04898 Glutamate synthase central domain V429_14895 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster V429_14895 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_14905 PF00528 Binding-protein-dependent transport system inner membrane component V429_14910 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_14925 PF00376 MerR family regulatory protein V429_14925 PF09278 MerR, DNA binding V429_14940 PF14521 Lysine-specific metallo-endopeptidase V429_14950 PF00271 Helicase conserved C-terminal domain V429_14950 PF00270 DEAD/DEAH box helicase V429_14955 PF13302 Acetyltransferase (GNAT) domain V429_14980 PF07759 Protein of unknown function (DUF1615) V429_14985 PF00682 HMGL-like V429_14985 PF08502 LeuA allosteric (dimerisation) domain V429_14990 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V429_14990 PF02142 MGS-like domain V429_14990 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain V429_14995 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain V429_14995 PF00117 Glutamine amidotransferase class-I V429_15000 PF05173 Dihydrodipicolinate reductase, C-terminus V429_15000 PF01113 Dihydrodipicolinate reductase, N-terminus V429_15010 PF01812 5-formyltetrahydrofolate cyclo-ligase family V429_15015 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V429_15020 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) V429_15025 PF01842 ACT domain V429_15025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_15025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V429_15030 PF01219 Prokaryotic diacylglycerol kinase V429_15035 PF00793 DAHP synthetase I family V429_15040 PF00583 Acetyltransferase (GNAT) family V429_15045 PF00005 ABC transporter V429_15050 PF01032 FecCD transport family V429_15055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_15055 PF00512 His Kinase A (phospho-acceptor) domain V429_15055 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_15055 PF00072 Response regulator receiver domain V429_15055 PF01627 Hpt domain V429_15055 PF00989 PAS fold V429_15065 PF00437 Type II/IV secretion system protein V429_15070 PF00483 Nucleotidyl transferase V429_15085 PF02421 Ferrous iron transport protein B V429_15085 PF07664 Ferrous iron transport protein B C terminus V429_15085 PF07670 Nucleoside recognition V429_15095 PF01253 Translation initiation factor SUI1 V429_15100 PF01169 Uncharacterized protein family UPF0016 V429_15130 PF13185 GAF domain V429_15130 PF00990 Diguanylate cyclase, GGDEF domain V429_15150 PF09190 DALR domain V429_15150 PF01406 tRNA synthetases class I (C) catalytic domain V429_15155 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD V429_15165 PF00149 Calcineurin-like phosphoesterase V429_15170 PF03916 Polysulphide reductase, NrfD V429_15175 PF00037 4Fe-4S binding domain V429_15175 PF13247 4Fe-4S dicluster domain V429_15195 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) V429_15200 PF11854 Putative outer membrane beta-barrel porin, MtrB/PioB V429_15210 PF01757 Acyltransferase family V429_15245 PF00665 Integrase core domain V429_15245 PF13276 HTH-like domain V429_15250 PF01527 Transposase V429_15260 PF04962 KduI/IolB family V429_15265 PF01261 Xylose isomerase-like TIM barrel V429_15270 PF00294 pfkB family carbohydrate kinase V429_15275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V429_15275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V429_15280 PF02653 Branched-chain amino acid transport system / permease component V429_15285 PF00005 ABC transporter V429_15290 PF13407 Periplasmic binding protein domain V429_15295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain V429_15295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold V429_15305 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_15305 PF00205 Thiamine pyrophosphate enzyme, central domain V429_15305 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V429_15315 PF00171 Aldehyde dehydrogenase family V429_15325 PF13005 zinc-finger binding domain of transposase IS66 V429_15325 PF13817 IS66 C-terminal element V429_15325 PF13007 Transposase C of IS166 homeodomain V429_15325 PF03050 Transposase IS66 family V429_15355 PF00589 Phage integrase family V429_15355 PF13356 Arm DNA-binding domain V429_15375 PF01066 CDP-alcohol phosphatidyltransferase V429_15380 PF01541 GIY-YIG catalytic domain V429_15380 PF02151 UvrB/uvrC motif V429_15380 PF08459 UvrC Helix-hairpin-helix N-terminal V429_15385 PF00072 Response regulator receiver domain V429_15385 PF00196 Bacterial regulatory proteins, luxR family V429_15390 PF02348 Cytidylyltransferase V429_15395 PF03966 Trm112p-like protein V429_15400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase V429_15405 PF00664 ABC transporter transmembrane region V429_15405 PF00005 ABC transporter V429_15440 PF00816 H-NS histone family V429_15560 PF05872 Bacterial protein of unknown function (DUF853) V429_15565 PF00155 Aminotransferase class I and II V429_15575 PF13609 Gram-negative porin V429_15580 PF06733 DEAD_2 V429_15580 PF13307 Helicase C-terminal domain V429_15590 PF00850 Histone deacetylase domain V429_15595 PF07690 Major Facilitator Superfamily V429_15600 PF01926 50S ribosome-binding GTPase V429_15605 PF00245 Alkaline phosphatase V429_15610 PF00245 Alkaline phosphatase V429_15625 PF01272 Transcription elongation factor, GreA/GreB, C-term V429_15625 PF14760 Rnk N-terminus V429_15630 PF00196 Bacterial regulatory proteins, luxR family V429_15630 PF00072 Response regulator receiver domain V429_15635 PF05231 MASE1 V429_15635 PF07730 Histidine kinase V429_15635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_15640 PF07690 Major Facilitator Superfamily V429_15645 PF08448 PAS fold V429_15645 PF00990 Diguanylate cyclase, GGDEF domain V429_15650 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_15655 PF00528 Binding-protein-dependent transport system inner membrane component V429_15660 PF00005 ABC transporter V429_15670 PF04116 Fatty acid hydroxylase superfamily V429_15675 PF13520 Amino acid permease V429_15680 PF00809 Pterin binding enzyme V429_15680 PF02607 B12 binding domain V429_15680 PF02574 Homocysteine S-methyltransferase V429_15680 PF02965 Vitamin B12 dependent methionine synthase, activation domain V429_15680 PF02310 B12 binding domain V429_15690 PF01595 Cyclin M transmembrane N-terminal domain V429_15690 PF00571 CBS domain V429_15690 PF03471 Transporter associated domain V429_15695 PF01895 PhoU domain V429_15710 PF00528 Binding-protein-dependent transport system inner membrane component V429_15715 PF00528 Binding-protein-dependent transport system inner membrane component V429_15720 PF14437 MafB19-like deaminase V429_15735 PF01274 Malate synthase V429_15740 PF00463 Isocitrate lyase family V429_15745 PF00308 Bacterial dnaA protein V429_15760 PF00586 AIR synthase related protein, N-terminal domain V429_15760 PF02769 AIR synthase related protein, C-terminal domain V429_15765 PF00551 Formyl transferase V429_15770 PF01784 NIF3 (NGG1p interacting factor 3) V429_15775 PF02954 Bacterial regulatory protein, Fis family V429_15775 PF00158 Sigma-54 interaction domain V429_15780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_15780 PF00512 His Kinase A (phospho-acceptor) domain V429_15780 PF00989 PAS fold V429_15785 PF02954 Bacterial regulatory protein, Fis family V429_15785 PF00072 Response regulator receiver domain V429_15785 PF00158 Sigma-54 interaction domain V429_15795 PF01842 ACT domain V429_15800 PF13089 Polyphosphate kinase N-terminal domain V429_15800 PF02503 Polyphosphate kinase middle domain V429_15800 PF17941 Polyphosphate kinase C-terminal domain 1 V429_15800 PF13090 Polyphosphate kinase C-terminal domain 2 V429_15805 PF02541 Ppx/GppA phosphatase family V429_15810 PF00571 CBS domain V429_15810 PF01769 Divalent cation transporter V429_15810 PF03448 MgtE intracellular N domain V429_15815 PF00669 Bacterial flagellin N-terminal helical region V429_15820 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V429_15820 PF00460 Flagella basal body rod protein V429_15825 PF10135 Rod binding protein V429_15825 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase V429_15830 PF02119 Flagellar P-ring protein V429_15835 PF02107 Flagellar L-ring protein V429_15840 PF00460 Flagella basal body rod protein V429_15840 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V429_15845 PF00460 Flagella basal body rod protein V429_15845 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V429_15850 PF00460 Flagella basal body rod protein V429_15850 PF07559 Flagellar basal body protein FlaE V429_15850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V429_15860 PF06429 Flagellar basal body rod FlgEFG protein C-terminal V429_15860 PF00460 Flagella basal body rod protein V429_15865 PF00460 Flagella basal body rod protein V429_15870 PF01739 CheR methyltransferase, SAM binding domain V429_15870 PF03705 CheR methyltransferase, all-alpha domain V429_15875 PF00072 Response regulator receiver domain V429_15875 PF01584 CheW-like domain V429_15880 PF13144 Chaperone for flagella basal body P-ring formation V429_15895 PF12850 Calcineurin-like phosphoesterase superfamily domain V429_15900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_15910 PF00849 RNA pseudouridylate synthase V429_15910 PF01479 S4 domain V429_15915 PF11871 Domain of unknown function (DUF3391) V429_15915 PF01966 HD domain V429_15925 PF00923 Transaldolase/Fructose-6-phosphate aldolase V429_15930 PF04055 Radical SAM superfamily V429_15940 PF00455 DeoR C terminal sensor domain V429_15940 PF08220 DeoR-like helix-turn-helix domain V429_15945 PF00892 EamA-like transporter family V429_15950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_15975 PF00313 'Cold-shock' DNA-binding domain V429_15980 PF02817 e3 binding domain V429_15980 PF00364 Biotin-requiring enzyme V429_15980 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V429_15985 PF02780 Transketolase, C-terminal domain V429_15985 PF02779 Transketolase, pyrimidine binding domain V429_15990 PF00676 Dehydrogenase E1 component V429_15995 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family V429_16005 PF05472 DNA replication terminus site-binding protein (Ter protein) V429_16010 PF00176 SNF2 family N-terminal domain V429_16010 PF00271 Helicase conserved C-terminal domain V429_16010 PF04434 SWIM zinc finger V429_16015 PF04337 Protein of unknown function, DUF480 V429_16025 PF06082 Exopolysaccharide biosynthesis protein YbjH V429_16045 PF02706 Chain length determinant protein V429_16055 PF00483 Nucleotidyl transferase V429_16060 PF04321 RmlD substrate binding domain V429_16065 PF00953 Glycosyl transferase family 4 V429_16080 PF01050 Mannose-6-phosphate isomerase V429_16080 PF00483 Nucleotidyl transferase V429_16090 PF01370 NAD dependent epimerase/dehydratase family V429_16095 PF16363 GDP-mannose 4,6 dehydratase V429_16110 PF01943 Polysaccharide biosynthesis protein V429_16115 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family V429_16130 PF16363 GDP-mannose 4,6 dehydratase V429_16135 PF00873 AcrB/AcrD/AcrF family V429_16140 PF00529 HlyD membrane-fusion protein of T1SS V429_16140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_16145 PF00440 Bacterial regulatory proteins, tetR family V429_16145 PF08361 MAATS-type transcriptional repressor, C-terminal region V429_16170 PF01479 S4 domain V429_16170 PF00849 RNA pseudouridylate synthase V429_16175 PF04079 Segregation and condensation complex subunit ScpB V429_16180 PF02616 Segregation and condensation protein ScpA V429_16185 PF01300 Telomere recombination V429_16190 PF02811 PHP domain V429_16195 PF04715 Anthranilate synthase component I, N terminal region V429_16195 PF00425 chorismate binding enzyme V429_16200 PF00117 Glutamine amidotransferase class-I V429_16200 PF02885 Glycosyl transferase family, helical bundle domain V429_16200 PF00591 Glycosyl transferase family, a/b domain V429_16205 PF02885 Glycosyl transferase family, helical bundle domain V429_16205 PF00591 Glycosyl transferase family, a/b domain V429_16210 PF00218 Indole-3-glycerol phosphate synthase V429_16210 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase V429_16215 PF00291 Pyridoxal-phosphate dependent enzyme V429_16220 PF00290 Tryptophan synthase alpha chain V429_16260 PF01773 Na+ dependent nucleoside transporter N-terminus V429_16260 PF07662 Na+ dependent nucleoside transporter C-terminus V429_16260 PF07670 Nucleoside recognition V429_16290 PF05930 Prophage CP4-57 regulatory protein (AlpA) V429_16305 PF00857 Isochorismatase family V429_16310 PF00549 CoA-ligase V429_16310 PF02629 CoA binding domain V429_16315 PF06545 Protein of unknown function (DUF1116) V429_16320 PF00696 Amino acid kinase family V429_16335 PF03466 LysR substrate binding domain V429_16335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_16380 PF04002 RadC-like JAB domain V429_16425 PF02613 Nitrate reductase delta subunit V429_16430 PF01568 Molydopterin dinucleotide binding domain V429_16430 PF18364 Molybdopterin oxidoreductase N-terminal domain V429_16430 PF00384 Molybdopterin oxidoreductase V429_16435 PF03264 NapC/NirT cytochrome c family, N-terminal region V429_16440 PF00072 Response regulator receiver domain V429_16440 PF00486 Transcriptional regulatory protein, C terminal V429_16450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family V429_16455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_16455 PF00672 HAMP domain V429_16455 PF00512 His Kinase A (phospho-acceptor) domain V429_16455 PF00072 Response regulator receiver domain V429_16455 PF01627 Hpt domain V429_16460 PF07690 Major Facilitator Superfamily V429_16465 PF01040 UbiA prenyltransferase family V429_16470 PF03626 Prokaryotic Cytochrome C oxidase subunit IV V429_16475 PF00510 Cytochrome c oxidase subunit III V429_16480 PF00115 Cytochrome C and Quinol oxidase polypeptide I V429_16485 PF00116 Cytochrome C oxidase subunit II, periplasmic domain V429_16485 PF06481 COX Aromatic Rich Motif V429_16495 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V429_16495 PF00034 Cytochrome c V429_16505 PF01156 Inosine-uridine preferring nucleoside hydrolase V429_16520 PF00127 Copper binding proteins, plastocyanin/azurin family V429_16525 PF02424 ApbE family V429_16530 PF07690 Major Facilitator Superfamily V429_16545 PF03372 Endonuclease/Exonuclease/phosphatase family V429_16550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_16555 PF00873 AcrB/AcrD/AcrF family V429_16565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_16565 PF00529 HlyD membrane-fusion protein of T1SS V429_16570 PF00873 AcrB/AcrD/AcrF family V429_16590 PF10437 Bacterial lipoate protein ligase C-terminus V429_16590 PF03099 Biotin/lipoate A/B protein ligase family V429_16595 PF00990 Diguanylate cyclase, GGDEF domain V429_16595 PF03707 Bacterial signalling protein N terminal repeat V429_16595 PF00563 EAL domain V429_16600 PF00873 AcrB/AcrD/AcrF family V429_16615 PF04143 Sulphur transport V429_16620 PF01022 Bacterial regulatory protein, arsR family V429_16635 PF02308 MgtC family V429_16640 PF00356 Bacterial regulatory proteins, lacI family V429_16640 PF13407 Periplasmic binding protein domain V429_16645 PF00251 Glycosyl hydrolases family 32 N-terminal domain V429_16645 PF08244 Glycosyl hydrolases family 32 C terminal V429_16650 PF02378 Phosphotransferase system, EIIC V429_16650 PF00367 phosphotransferase system, EIIB V429_16655 PF00294 pfkB family carbohydrate kinase V429_16660 PF11471 Maltoporin periplasmic N-terminal extension V429_16660 PF02264 LamB porin V429_16665 PF00684 DnaJ central domain V429_16665 PF01556 DnaJ C terminal domain V429_16665 PF00226 DnaJ domain V429_16670 PF00012 Hsp70 protein V429_16675 PF01025 GrpE V429_16680 PF01513 ATP-NAD kinase V429_16685 PF02463 RecF/RecN/SMC N terminal domain V429_16695 PF02833 DHHA2 domain V429_16695 PF01368 DHH family V429_16705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_16710 PF12704 MacB-like periplasmic core domain V429_16710 PF02687 FtsX-like permease family V429_16710 PF00005 ABC transporter V429_16715 PF02321 Outer membrane efflux protein V429_16720 PF08021 Siderophore-interacting FAD-binding domain V429_16720 PF04954 Siderophore-interacting protein V429_16725 PF00793 DAHP synthetase I family V429_16730 PF00816 H-NS histone family V429_16745 PF01266 FAD dependent oxidoreductase V429_16750 PF07883 Cupin domain V429_16750 PF01381 Helix-turn-helix V429_16755 PF00171 Aldehyde dehydrogenase family V429_16760 PF00202 Aminotransferase class-III V429_16770 PF00324 Amino acid permease V429_16780 PF13520 Amino acid permease V429_16790 PF02690 Na+/Pi-cotransporter V429_16795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase V429_16795 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase V429_16805 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase V429_16810 PF00072 Response regulator receiver domain V429_16810 PF00989 PAS fold V429_16810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_16810 PF01627 Hpt domain V429_16810 PF00512 His Kinase A (phospho-acceptor) domain V429_16810 PF00497 Bacterial extracellular solute-binding proteins, family 3 V429_16825 PF01048 Phosphorylase superfamily V429_16845 PF12848 ABC transporter V429_16845 PF00005 ABC transporter V429_16860 PF13474 SnoaL-like domain V429_16865 PF14821 Threonine synthase N terminus V429_16865 PF00291 Pyridoxal-phosphate dependent enzyme V429_16870 PF08544 GHMP kinases C terminal V429_16870 PF00288 GHMP kinases N terminal domain V429_16875 PF00696 Amino acid kinase family V429_16875 PF00742 Homoserine dehydrogenase V429_16875 PF13840 ACT domain V429_16875 PF03447 Homoserine dehydrogenase, NAD binding domain V429_16875 PF01842 ACT domain V429_16880 PF00588 SpoU rRNA Methylase family V429_16885 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) V429_16900 PF03737 Aldolase/RraA V429_16915 PF00486 Transcriptional regulatory protein, C terminal V429_16915 PF00072 Response regulator receiver domain V429_16930 PF00664 ABC transporter transmembrane region V429_16930 PF00005 ABC transporter V429_16935 PF00664 ABC transporter transmembrane region V429_16935 PF00005 ABC transporter V429_16955 PF01980 tRNA-methyltransferase O V429_16955 PF18389 TrmO C-terminal domain V429_16960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal V429_16960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III V429_16970 PF17871 AAA lid domain V429_16970 PF00004 ATPase family associated with various cellular activities (AAA) V429_16970 PF07724 AAA domain (Cdc48 subfamily) V429_16970 PF02861 Clp amino terminal domain, pathogenicity island component V429_16970 PF10431 C-terminal, D2-small domain, of ClpB protein V429_16975 PF00291 Pyridoxal-phosphate dependent enzyme V429_16980 PF00381 PTS HPr component phosphorylation site V429_16985 PF00391 PEP-utilising enzyme, mobile domain V429_16985 PF02896 PEP-utilising enzyme, TIM barrel domain V429_16985 PF05524 PEP-utilising enzyme, N-terminal V429_16990 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V429_16995 PF17151 Periplasmic sensor domain V429_16995 PF00990 Diguanylate cyclase, GGDEF domain V429_17005 PF01292 Prokaryotic cytochrome b561 V429_17020 PF13476 AAA domain V429_17025 PF00149 Calcineurin-like phosphoesterase V429_17025 PF12320 Type 5 capsule protein repressor C-terminal domain V429_17035 PF04381 Putative exonuclease, RdgC V429_17050 PF00999 Sodium/hydrogen exchanger family V429_17050 PF02254 TrkA-N domain V429_17055 PF04151 Bacterial pre-peptidase C-terminal domain V429_17055 PF04389 Peptidase family M28 V429_17065 PF02887 Pyruvate kinase, alpha/beta domain V429_17065 PF00224 Pyruvate kinase, barrel domain V429_17070 PF12795 Mechanosensitive ion channel porin domain V429_17070 PF00924 Mechanosensitive ion channel V429_17070 PF12794 Mechanosensitive ion channel inner membrane domain 1 V429_17080 PF10282 Lactonase, 7-bladed beta-propeller V429_17085 PF00860 Permease family V429_17095 PF05433 Glycine zipper 2TM domain V429_17095 PF16998 17 kDa outer membrane surface antigen V429_17100 PF03949 Malic enzyme, NAD binding domain V429_17100 PF00390 Malic enzyme, N-terminal domain V429_17105 PF00072 Response regulator receiver domain V429_17115 PF13247 4Fe-4S dicluster domain V429_17120 PF12838 4Fe-4S dicluster domain V429_17120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_17120 PF00384 Molybdopterin oxidoreductase V429_17120 PF01568 Molydopterin dinucleotide binding domain V429_17120 PF01568 Molydopterin dinucleotide binding domain V429_17120 PF00384 Molybdopterin oxidoreductase V429_17120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_17120 PF12838 4Fe-4S dicluster domain V429_17120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V429_17120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region V429_17160 PF02634 FdhD/NarQ family V429_17165 PF12728 Helix-turn-helix domain V429_17165 PF12727 PBP superfamily domain V429_17170 PF00989 PAS fold V429_17170 PF00512 His Kinase A (phospho-acceptor) domain V429_17170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_17175 PF00158 Sigma-54 interaction domain V429_17175 PF00072 Response regulator receiver domain V429_17175 PF02954 Bacterial regulatory protein, Fis family V429_17180 PF12849 PBP superfamily domain V429_17185 PF00528 Binding-protein-dependent transport system inner membrane component V429_17190 PF00005 ABC transporter V429_17195 PF12804 MobA-like NTP transferase domain V429_17200 PF00994 Probable molybdopterin binding domain V429_17200 PF03454 MoeA C-terminal region (domain IV) V429_17200 PF03453 MoeA N-terminal region (domain I and II) V429_17205 PF04632 Fusaric acid resistance protein family V429_17220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_17220 PF08447 PAS fold V429_17220 PF13426 PAS domain V429_17240 PF05114 Protein of unknown function (DUF692) V429_17250 PF10725 Protein of unknown function (DUF2517) V429_17270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_17270 PF00512 His Kinase A (phospho-acceptor) domain V429_17270 PF09308 LuxQ, periplasmic V429_17270 PF00072 Response regulator receiver domain V429_17275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_17280 PF00528 Binding-protein-dependent transport system inner membrane component V429_17285 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_17285 PF00528 Binding-protein-dependent transport system inner membrane component V429_17290 PF00005 ABC transporter V429_17290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_17295 PF00005 ABC transporter V429_17295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_17305 PF01869 BadF/BadG/BcrA/BcrD ATPase family V429_17310 PF02838 Glycosyl hydrolase family 20, domain 2 V429_17310 PF00728 Glycosyl hydrolase family 20, catalytic domain V429_17335 PF08272 Topoisomerase I zinc-ribbon-like V429_17335 PF01131 DNA topoisomerase V429_17335 PF01751 Toprim domain V429_17335 PF01396 Topoisomerase DNA binding C4 zinc finger V429_17340 PF04996 Succinylarginine dihydrolase V429_17345 PF08496 Peptidase family S49 N-terminal V429_17345 PF01343 Peptidase family S49 V429_17350 PF00106 short chain dehydrogenase V429_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_17355 PF03466 LysR substrate binding domain V429_17360 PF07690 Major Facilitator Superfamily V429_17365 PF00155 Aminotransferase class I and II V429_17375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_17375 PF03466 LysR substrate binding domain V429_17385 PF01161 Phosphatidylethanolamine-binding protein V429_17395 PF01204 Trehalase V429_17400 PF00579 tRNA synthetases class I (W and Y) V429_17405 PF01476 LysM domain V429_17405 PF08525 Opacity-associated protein A N-terminal motif V429_17405 PF01551 Peptidase family M23 V429_17420 PF03702 Anhydro-N-acetylmuramic acid kinase V429_17430 PF01965 DJ-1/PfpI family V429_17435 PF01042 Endoribonuclease L-PSP V429_17460 PF02780 Transketolase, C-terminal domain V429_17460 PF00456 Transketolase, thiamine diphosphate binding domain V429_17460 PF02779 Transketolase, pyrimidine binding domain V429_17465 PF02773 S-adenosylmethionine synthetase, C-terminal domain V429_17465 PF02772 S-adenosylmethionine synthetase, central domain V429_17465 PF00438 S-adenosylmethionine synthetase, N-terminal domain V429_17470 PF17283 SprT-like zinc ribbon domain V429_17470 PF10263 SprT-like family V429_17475 PF04231 Endonuclease I V429_17480 PF04452 RNA methyltransferase V429_17485 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain V429_17485 PF02951 Prokaryotic glutathione synthetase, N-terminal domain V429_17490 PF12729 Four helix bundle sensory module for signal transduction V429_17490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_17490 PF00672 HAMP domain V429_17495 PF02622 Uncharacterized ACR, COG1678 V429_17500 PF03652 Holliday junction resolvase V429_17505 PF00854 POT family V429_17510 PF00144 Beta-lactamase V429_17515 PF17863 AAA lid domain V429_17515 PF07726 ATPase family associated with various cellular activities (AAA) V429_17525 PF13559 Domain of unknown function (DUF4129) V429_17525 PF01841 Transglutaminase-like superfamily V429_17525 PF11992 Domain of unknown function (DUF3488) V429_17530 PF01235 Sodium:alanine symporter family V429_17535 PF00923 Transaldolase/Fructose-6-phosphate aldolase V429_17550 PF03167 Uracil DNA glycosylase superfamily V429_17555 PF01228 Glycine radical V429_17560 PF00375 Sodium:dicarboxylate symporter family V429_17565 PF00793 DAHP synthetase I family V429_17570 PF13369 Transglutaminase-like superfamily V429_17580 PF17827 PrmC N-terminal domain V429_17580 PF13847 Methyltransferase domain V429_17585 PF03462 PCRF domain V429_17585 PF00472 RF-1 domain V429_17590 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain V429_17590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain V429_17590 PF01488 Shikimate / quinate 5-dehydrogenase V429_17595 PF03550 Outer membrane lipoprotein LolB V429_17600 PF08544 GHMP kinases C terminal V429_17600 PF00288 GHMP kinases N terminal domain V429_17610 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase V429_17610 PF14572 Phosphoribosyl synthetase-associated domain V429_17615 PF02872 5'-nucleotidase, C-terminal domain V429_17615 PF00149 Calcineurin-like phosphoesterase V429_17620 PF01195 Peptidyl-tRNA hydrolase V429_17625 PF06071 Protein of unknown function (DUF933) V429_17625 PF01926 50S ribosome-binding GTPase V429_17670 PF03600 Citrate transporter V429_17670 PF02080 TrkA-C domain V429_17675 PF04973 Nicotinamide mononucleotide transporter V429_17680 PF01048 Phosphorylase superfamily V429_17700 PF16657 Maltogenic Amylase, C-terminal domain V429_17700 PF00128 Alpha amylase, catalytic domain V429_17710 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II V429_17710 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase V429_17710 PF10371 Domain of unknown function V429_17710 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg V429_17710 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_17715 PF07690 Major Facilitator Superfamily V429_17720 PF13419 Haloacid dehalogenase-like hydrolase V429_17730 PF00171 Aldehyde dehydrogenase family V429_17735 PF04958 Arginine N-succinyltransferase beta subunit V429_17740 PF00202 Aminotransferase class-III V429_17745 PF00117 Glutamine amidotransferase class-I V429_17755 PF00579 tRNA synthetases class I (W and Y) V429_17760 PF13419 Haloacid dehalogenase-like hydrolase V429_17765 PF00834 Ribulose-phosphate 3 epimerase family V429_17770 PF02086 D12 class N6 adenine-specific DNA methyltransferase V429_17780 PF01761 3-dehydroquinate synthase V429_17785 PF01202 Shikimate kinase V429_17790 PF00263 Bacterial type II and III secretion system protein V429_17790 PF11741 AMIN domain V429_17790 PF03958 Bacterial type II/III secretion system short domain V429_17790 PF07660 Secretin and TonB N terminus short domain V429_17815 PF00912 Transglycosylase V429_17815 PF17092 Penicillin-binding protein OB-like domain V429_17815 PF00905 Penicillin binding protein transpeptidase domain V429_17820 PF03466 LysR substrate binding domain V429_17820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_17825 PF00672 HAMP domain V429_17825 PF02743 Cache domain V429_17825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_17840 PF03466 LysR substrate binding domain V429_17855 PF08525 Opacity-associated protein A N-terminal motif V429_17855 PF01551 Peptidase family M23 V429_17855 PF01476 LysM domain V429_17865 PF12795 Mechanosensitive ion channel porin domain V429_17865 PF12794 Mechanosensitive ion channel inner membrane domain 1 V429_17865 PF00924 Mechanosensitive ion channel V429_17870 PF03009 Glycerophosphoryl diester phosphodiesterase family V429_17875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_17875 PF02743 Cache domain V429_17875 PF00672 HAMP domain V429_17880 PF00890 FAD binding domain V429_17880 PF02910 Fumarate reductase flavoprotein C-term V429_17885 PF13085 2Fe-2S iron-sulfur cluster binding domain V429_17885 PF13183 4Fe-4S dicluster domain V429_17890 PF02300 Fumarate reductase subunit C V429_17895 PF02313 Fumarate reductase subunit D V429_17915 PF06224 Winged helix DNA-binding domain V429_17930 PF00501 AMP-binding enzyme V429_17950 PF00072 Response regulator receiver domain V429_17950 PF00486 Transcriptional regulatory protein, C terminal V429_17955 PF08521 Two-component sensor kinase N-terminal V429_17955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_17955 PF00512 His Kinase A (phospho-acceptor) domain V429_17965 PF00478 IMP dehydrogenase / GMP reductase domain V429_17975 PF08207 Elongation factor P (EF-P) KOW-like domain V429_17975 PF01132 Elongation factor P (EF-P) OB domain V429_17975 PF09285 Elongation factor P, C-terminal V429_17980 PF09997 Predicted membrane protein (DUF2238) V429_17990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V429_17990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_18000 PF08448 PAS fold V429_18000 PF00990 Diguanylate cyclase, GGDEF domain V429_18010 PF13419 Haloacid dehalogenase-like hydrolase V429_18025 PF00990 Diguanylate cyclase, GGDEF domain V429_18025 PF05230 MASE2 domain V429_18030 PF00313 'Cold-shock' DNA-binding domain V429_18035 PF00857 Isochorismatase family V429_18040 PF01494 FAD binding domain V429_18045 PF00919 Uncharacterized protein family UPF0004 V429_18045 PF01938 TRAM domain V429_18045 PF04055 Radical SAM superfamily V429_18050 PF02562 PhoH-like protein V429_18055 PF02130 Uncharacterized protein family UPF0054 V429_18060 PF03471 Transporter associated domain V429_18060 PF00571 CBS domain V429_18065 PF00795 Carbon-nitrogen hydrolase V429_18070 PF07295 Zinc-ribbon containing domain V429_18075 PF00133 tRNA synthetases class I (I, L, M and V) V429_18075 PF08264 Anticodon-binding domain of tRNA V429_18075 PF13603 Leucyl-tRNA synthetase, Domain 2 V429_18090 PF01467 Cytidylyltransferase-like V429_18100 PF02590 Predicted SPOUT methyltransferase V429_18105 PF00905 Penicillin binding protein transpeptidase domain V429_18105 PF03717 Penicillin-binding Protein dimerisation domain V429_18110 PF01098 Cell cycle protein V429_18120 PF13406 Transglycosylase SLT domain V429_18125 PF05036 Sporulation related domain V429_18125 PF03330 Lytic transglycolase V429_18130 PF00768 D-alanyl-D-alanine carboxypeptidase V429_18130 PF07943 Penicillin-binding protein 5, C-terminal domain V429_18135 PF04359 Protein of unknown function (DUF493) V429_18140 PF03099 Biotin/lipoate A/B protein ligase family V429_18150 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family V429_18150 PF04055 Radical SAM superfamily V429_18160 PF06821 Serine hydrolase V429_18165 PF02508 Rnf-Nqr subunit, membrane protein V429_18180 PF13411 MerR HTH family regulatory protein V429_18185 PF02272 DHHA1 domain V429_18185 PF17768 RecJ OB domain V429_18185 PF01368 DHH family V429_18190 PF13098 Thioredoxin-like domain V429_18190 PF10411 Disulfide bond isomerase protein N-terminus V429_18195 PF01741 Large-conductance mechanosensitive channel, MscL V429_18200 PF02899 Phage integrase, N-terminal SAM-like domain V429_18200 PF00589 Phage integrase family V429_18205 PF00258 Flavodoxin V429_18210 PF01523 Putative modulator of DNA gyrase V429_18215 PF01523 Putative modulator of DNA gyrase V429_18225 PF17969 L,D-transpeptidase C-terminal domain V429_18225 PF03734 L,D-transpeptidase catalytic domain V429_18260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_18260 PF00384 Molybdopterin oxidoreductase V429_18260 PF01568 Molydopterin dinucleotide binding domain V429_18265 PF03916 Polysulphide reductase, NrfD V429_18270 PF13247 4Fe-4S dicluster domain V429_18275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_18275 PF00989 PAS fold V429_18275 PF00512 His Kinase A (phospho-acceptor) domain V429_18280 PF00196 Bacterial regulatory proteins, luxR family V429_18280 PF00072 Response regulator receiver domain V429_18290 PF00072 Response regulator receiver domain V429_18290 PF04397 LytTr DNA-binding domain V429_18295 PF13722 5TM C-terminal transporter carbon starvation CstA V429_18295 PF02554 Carbon starvation protein CstA V429_18300 PF03575 Peptidase family S51 V429_18305 PF00206 Lyase V429_18305 PF10415 Fumarase C C-terminus V429_18315 PF02635 DsrE/DsrF-like family V429_18320 PF03707 Bacterial signalling protein N terminal repeat V429_18320 PF00990 Diguanylate cyclase, GGDEF domain V429_18320 PF00563 EAL domain V429_18330 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain V429_18330 PF01138 3' exoribonuclease family, domain 1 V429_18330 PF00013 KH domain V429_18330 PF03725 3' exoribonuclease family, domain 2 V429_18330 PF00575 S1 RNA binding domain V429_18335 PF00312 Ribosomal protein S15 V429_18340 PF09157 Pseudouridine synthase II TruB, C-terminal V429_18340 PF16198 tRNA pseudouridylate synthase B C-terminal domain V429_18340 PF01509 TruB family pseudouridylate synthase (N terminal domain) V429_18345 PF02033 Ribosome-binding factor A V429_18350 PF00009 Elongation factor Tu GTP binding domain V429_18350 PF04760 Translation initiation factor IF-2, N-terminal region V429_18350 PF11987 Translation-initiation factor 2 V429_18350 PF08364 Bacterial translation initiation factor IF-2 associated region V429_18355 PF08529 NusA N-terminal domain V429_18355 PF13184 NusA-like KH domain V429_18355 PF00575 S1 RNA binding domain V429_18360 PF02576 RimP N-terminal domain V429_18360 PF17384 RimP C-terminal SH3 domain V429_18375 PF03840 Preprotein translocase SecG subunit V429_18380 PF00121 Triosephosphate isomerase V429_18385 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I V429_18385 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II V429_18385 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III V429_18385 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain V429_18390 PF00809 Pterin binding enzyme V429_18395 PF01434 Peptidase family M41 V429_18395 PF00004 ATPase family associated with various cellular activities (AAA) V429_18395 PF17862 AAA+ lid domain V429_18395 PF06480 FtsH Extracellular V429_18400 PF01728 FtsJ-like methyltransferase V429_18405 PF01985 CRS1 / YhbY (CRM) domain V429_18415 PF01272 Transcription elongation factor, GreA/GreB, C-term V429_18415 PF03449 Transcription elongation factor, N-terminal V429_18420 PF13677 Membrane MotB of proton-channel complex MotA/MotB V429_18420 PF00691 OmpA family V429_18425 PF01618 MotA/TolQ/ExbB proton channel family V429_18430 PF02609 Exonuclease VII small subunit V429_18435 PF00348 Polyprenyl synthetase V429_18440 PF13292 1-deoxy-D-xylulose-5-phosphate synthase V429_18440 PF02780 Transketolase, C-terminal domain V429_18440 PF02779 Transketolase, pyrimidine binding domain V429_18445 PF00528 Binding-protein-dependent transport system inner membrane component V429_18445 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_18455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_18460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_18460 PF00005 ABC transporter V429_18465 PF04608 Phosphatidylglycerophosphatase A V429_18470 PF00586 AIR synthase related protein, N-terminal domain V429_18470 PF02769 AIR synthase related protein, C-terminal domain V429_18475 PF01029 NusB family V429_18480 PF00885 6,7-dimethyl-8-ribityllumazine synthase V429_18490 PF00925 GTP cyclohydrolase II V429_18490 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase V429_18495 PF00677 Lumazine binding domain V429_18500 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region V429_18500 PF01872 RibD C-terminal domain V429_18505 PF03477 ATP cone domain V429_18520 PF00464 Serine hydroxymethyltransferase V429_18535 PF02613 Nitrate reductase delta subunit V429_18555 PF00990 Diguanylate cyclase, GGDEF domain V429_18555 PF03707 Bacterial signalling protein N terminal repeat V429_18555 PF13188 PAS domain V429_18555 PF00563 EAL domain V429_18565 PF00501 AMP-binding enzyme V429_18565 PF16177 Acetyl-coenzyme A synthetase N-terminus V429_18565 PF13193 AMP-binding enzyme C-terminal domain V429_18575 PF01220 Dehydroquinase class II V429_18580 PF00364 Biotin-requiring enzyme V429_18585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain V429_18585 PF02785 Biotin carboxylase C-terminal domain V429_18585 PF00289 Biotin carboxylase, N-terminal domain V429_18595 PF00474 Sodium:solute symporter family V429_18600 PF00367 phosphotransferase system, EIIB V429_18600 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 V429_18600 PF02378 Phosphotransferase system, EIIC V429_18605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_18605 PF03466 LysR substrate binding domain V429_18610 PF08240 Alcohol dehydrogenase GroES-like domain V429_18610 PF00107 Zinc-binding dehydrogenase V429_18620 PF01842 ACT domain V429_18620 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_18620 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V429_18625 PF14602 Hexapeptide repeat of succinyl-transferase V429_18625 PF12464 Maltose acetyltransferase V429_18630 PF00881 Nitroreductase family V429_18635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family V429_18635 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_18640 PF01343 Peptidase family S49 V429_18655 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V429_18655 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V429_18660 PF07023 Protein of unknown function (DUF1315) V429_18665 PF17763 Glutaminase/Asparaginase C-terminal domain V429_18665 PF00710 Asparaginase, N-terminal V429_18670 PF03616 Sodium/glutamate symporter V429_18675 PF00672 HAMP domain V429_18675 PF02743 Cache domain V429_18675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_18680 PF00472 RF-1 domain V429_18680 PF03462 PCRF domain V429_18685 PF01336 OB-fold nucleic acid binding domain V429_18685 PF00152 tRNA synthetases class II (D, K and N) V429_18690 PF02567 Phenazine biosynthesis-like protein V429_18695 PF00175 Oxidoreductase NAD-binding domain V429_18695 PF00258 Flavodoxin V429_18695 PF00667 FAD binding domain V429_18700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V429_18700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V429_18705 PF01507 Phosphoadenosine phosphosulfate reductase family V429_18710 PF04069 Substrate binding domain of ABC-type glycine betaine transport system V429_18715 PF00528 Binding-protein-dependent transport system inner membrane component V429_18720 PF00571 CBS domain V429_18720 PF00005 ABC transporter V429_18725 PF00186 Dihydrofolate reductase V429_18730 PF12821 Threonine/Serine exporter, ThrE V429_18735 PF06738 Putative threonine/serine exporter V429_18745 PF00994 Probable molybdopterin binding domain V429_18755 PF00109 Beta-ketoacyl synthase, N-terminal domain V429_18755 PF02801 Beta-ketoacyl synthase, C-terminal domain V429_18770 PF02801 Beta-ketoacyl synthase, C-terminal domain V429_18770 PF00109 Beta-ketoacyl synthase, N-terminal domain V429_18795 PF00221 Aromatic amino acid lyase V429_18805 PF07977 FabA-like domain V429_18810 PF00501 AMP-binding enzyme V429_18810 PF13193 AMP-binding enzyme C-terminal domain V429_18820 PF00550 Phosphopantetheine attachment site V429_18825 PF00550 Phosphopantetheine attachment site V429_18860 PF00034 Cytochrome c V429_18860 PF03150 Di-haem cytochrome c peroxidase V429_18865 PF00194 Eukaryotic-type carbonic anhydrase V429_18870 PF04227 Indigoidine synthase A like protein V429_18875 PF00294 pfkB family carbohydrate kinase V429_18880 PF04324 BFD-like [2Fe-2S] binding domain V429_18880 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V429_18880 PF13806 Rieske-like [2Fe-2S] domain V429_18880 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V429_18880 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_18880 PF18267 Rubredoxin NAD+ reductase C-terminal domain V429_18885 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V429_18885 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V429_18885 PF04324 BFD-like [2Fe-2S] binding domain V429_18885 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_18885 PF18267 Rubredoxin NAD+ reductase C-terminal domain V429_18885 PF13806 Rieske-like [2Fe-2S] domain V429_18890 PF00005 ABC transporter V429_18895 PF00528 Binding-protein-dependent transport system inner membrane component V429_18900 PF00005 ABC transporter V429_18910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V429_18910 PF10414 Sirohaem synthase dimerisation region V429_18910 PF14824 Sirohaem biosynthesis protein central V429_18915 PF00384 Molybdopterin oxidoreductase V429_18915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain V429_18915 PF01568 Molydopterin dinucleotide binding domain V429_18915 PF04324 BFD-like [2Fe-2S] binding domain V429_18930 PF00582 Universal stress protein family V429_18940 PF00171 Aldehyde dehydrogenase family V429_18945 PF00696 Amino acid kinase family V429_18945 PF01472 PUA domain V429_18950 PF07417 Sigma factor-binding transcriptional regulator Crl V429_18960 PF00156 Phosphoribosyl transferase domain V429_18965 PF07687 Peptidase dimerisation domain V429_18965 PF01546 Peptidase family M20/M25/M40 V429_18975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_18975 PF00005 ABC transporter V429_18980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region V429_18980 PF00005 ABC transporter V429_18990 PF00528 Binding-protein-dependent transport system inner membrane component V429_18990 PF12911 N-terminal TM domain of oligopeptide transport permease C V429_18995 PF00528 Binding-protein-dependent transport system inner membrane component V429_19000 PF00593 TonB dependent receptor V429_19000 PF07715 TonB-dependent Receptor Plug Domain V429_19010 PF01618 MotA/TolQ/ExbB proton channel family V429_19015 PF01618 MotA/TolQ/ExbB proton channel family V429_19020 PF02472 Biopolymer transport protein ExbD/TolR V429_19035 PF00704 Glycosyl hydrolases family 18 V429_19035 PF06483 Chitinase C V429_19075 PF00749 tRNA synthetases class I (E and Q), catalytic domain V429_19080 PF00672 HAMP domain V429_19080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_19090 PF00313 'Cold-shock' DNA-binding domain V429_19120 PF00929 Exonuclease V429_19125 PF03193 RsgA GTPase V429_19130 PF02666 Phosphatidylserine decarboxylase V429_19135 PF09905 DNA-binding protein VF530 V429_19155 PF00990 Diguanylate cyclase, GGDEF domain V429_19155 PF03707 Bacterial signalling protein N terminal repeat V429_19155 PF00563 EAL domain V429_19160 PF06877 Regulator of ribonuclease activity B V429_19165 PF05547 Immune inhibitor A peptidase M6 V429_19165 PF00801 PKD domain V429_19185 PF00561 alpha/beta hydrolase fold V429_19190 PF00005 ABC transporter V429_19190 PF00664 ABC transporter transmembrane region V429_19195 PF06004 Bacterial protein of unknown function (DUF903) V429_19200 PF05922 Peptidase inhibitor I9 V429_19200 PF00082 Subtilase family V429_19205 PF00581 Rhodanese-like domain V429_19210 PF04960 Glutaminase V429_19215 PF04320 Protein with unknown function (DUF469) V429_19220 PF02390 Putative methyltransferase V429_19225 PF04389 Peptidase family M28 V429_19225 PF01483 Proprotein convertase P-domain V429_19230 PF00155 Aminotransferase class I and II V429_19235 PF00563 EAL domain V429_19235 PF12792 CSS motif domain associated with EAL V429_19240 PF08338 Domain of unknown function (DUF1731) V429_19240 PF01370 NAD dependent epimerase/dehydratase family V429_19250 PF00005 ABC transporter V429_19255 PF13472 GDSL-like Lipase/Acylhydrolase family V429_19260 PF00072 Response regulator receiver domain V429_19260 PF01584 CheW-like domain V429_19270 PF06826 Predicted Permease Membrane Region V429_19270 PF02080 TrkA-C domain V429_19275 PF03006 Haemolysin-III related V429_19280 PF00282 Pyridoxal-dependent decarboxylase conserved domain V429_19285 PF04279 Intracellular septation protein A V429_19290 PF03795 YCII-related domain V429_19295 PF00459 Inositol monophosphatase family V429_19305 PF00483 Nucleotidyl transferase V429_19310 PF00854 POT family V429_19315 PF00072 Response regulator receiver domain V429_19345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_19350 PF02321 Outer membrane efflux protein V429_19360 PF01207 Dihydrouridine synthase (Dus) V429_19365 PF02954 Bacterial regulatory protein, Fis family V429_19370 PF01810 LysE type translocator V429_19395 PF01521 Iron-sulphur cluster biosynthesis V429_19405 PF00654 Voltage gated chloride channel V429_19410 PF00202 Aminotransferase class-III V429_19425 PF01569 PAP2 superfamily V429_19435 PF11849 Domain of unknown function (DUF3369) V429_19445 PF00893 Small Multidrug Resistance protein V429_19450 PF00893 Small Multidrug Resistance protein V429_19455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_19460 PF00912 Transglycosylase V429_19460 PF14814 Bifunctional transglycosylase second domain V429_19460 PF00905 Penicillin binding protein transpeptidase domain V429_19465 PF08482 ATP-dependent helicase C-terminal V429_19465 PF00270 DEAD/DEAH box helicase V429_19465 PF04408 Helicase associated domain (HA2) V429_19465 PF00271 Helicase conserved C-terminal domain V429_19475 PF17746 SfsA N-terminal OB domain V429_19475 PF03749 Sugar fermentation stimulation protein RE domain V429_19480 PF01258 Prokaryotic dksA/traR C4-type zinc finger V429_19485 PF00749 tRNA synthetases class I (E and Q), catalytic domain V429_19490 PF12627 Probable RNA and SrmB- binding site of polymerase A V429_19490 PF12626 Polymerase A arginine-rich C-terminus V429_19490 PF01743 Poly A polymerase head domain V429_19495 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V429_19500 PF02548 Ketopantoate hydroxymethyltransferase V429_19505 PF02569 Pantoate-beta-alanine ligase V429_19525 PF01869 BadF/BadG/BcrA/BcrD ATPase family V429_19530 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component V429_19535 PF01061 ABC-2 type transporter V429_19540 PF00005 ABC transporter V429_19545 PF00156 Phosphoribosyl transferase domain V429_19550 PF00440 Bacterial regulatory proteins, tetR family V429_19555 PF02441 Flavoprotein V429_19560 PF01225 Mur ligase family, catalytic domain V429_19560 PF08245 Mur ligase middle domain V429_19560 PF02875 Mur ligase family, glutamate ligase domain V429_19565 PF00719 Inorganic pyrophosphatase V429_19580 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) V429_19595 PF00005 ABC transporter V429_19615 PF08447 PAS fold V429_19615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_19640 PF03600 Citrate transporter V429_19640 PF02080 TrkA-C domain V429_19645 PF00009 Elongation factor Tu GTP binding domain V429_19650 PF01507 Phosphoadenosine phosphosulfate reductase family V429_19655 PF10414 Sirohaem synthase dimerisation region V429_19655 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V429_19655 PF14824 Sirohaem biosynthesis protein central V429_19660 PF01145 SPFH domain / Band 7 family V429_19660 PF16200 C-terminal region of band_7 V429_19665 PF01957 NfeD-like C-terminal, partner-binding V429_19670 PF01380 SIS domain V429_19670 PF00571 CBS domain V429_19675 PF00005 ABC transporter V429_19675 PF12848 ABC transporter V429_19685 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ V429_19690 PF03466 LysR substrate binding domain V429_19690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_19695 PF02525 Flavodoxin-like fold V429_19730 PF00561 alpha/beta hydrolase fold V429_19735 PF00474 Sodium:solute symporter family V429_19740 PF03734 L,D-transpeptidase catalytic domain V429_19740 PF17969 L,D-transpeptidase C-terminal domain V429_19745 PF00924 Mechanosensitive ion channel V429_19750 PF00871 Acetokinase family V429_19755 PF04074 YhcH/YjgK/YiaL V429_19765 PF07732 Multicopper oxidase V429_19765 PF07731 Multicopper oxidase V429_19765 PF00394 Multicopper oxidase V429_19770 PF01177 Asp/Glu/Hydantoin racemase V429_19775 PF01810 LysE type translocator V429_19785 PF00155 Aminotransferase class I and II V429_19785 PF00392 Bacterial regulatory proteins, gntR family V429_19810 PF00209 Sodium:neurotransmitter symporter family V429_19820 PF00209 Sodium:neurotransmitter symporter family V429_19840 PF07690 Major Facilitator Superfamily V429_19850 PF01037 Lrp/AsnC ligand binding domain V429_19865 PF01047 MarR family V429_19870 PF02566 OsmC-like protein V429_19875 PF00107 Zinc-binding dehydrogenase V429_19875 PF16884 N-terminal domain of oxidoreductase V429_19880 PF00293 NUDIX domain V429_19890 PF01641 SelR domain V429_19895 PF00128 Alpha amylase, catalytic domain V429_19895 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V429_19900 PF00128 Alpha amylase, catalytic domain V429_19900 PF02806 Alpha amylase, C-terminal all-beta domain V429_19900 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) V429_19905 PF02446 4-alpha-glucanotransferase V429_19910 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain V429_19910 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain V429_19915 PF01263 Aldose 1-epimerase V429_19920 PF02445 Quinolinate synthetase A protein V429_19925 PF00672 HAMP domain V429_19925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_19970 PF13174 Tetratricopeptide repeat V429_19970 PF16331 TolA binding protein trimerisation V429_19975 PF00691 OmpA family V429_19980 PF07676 WD40-like Beta Propeller Repeat V429_19980 PF04052 TolB amino-terminal domain V429_19990 PF02472 Biopolymer transport protein ExbD/TolR V429_19995 PF01618 MotA/TolQ/ExbB proton channel family V429_20000 PF03061 Thioesterase superfamily V429_20005 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) V429_20010 PF08173 Membrane bound YbgT-like protein V429_20015 PF02322 Cytochrome bd terminal oxidase subunit II V429_20020 PF01654 Cytochrome bd terminal oxidase subunit I V429_20025 PF05491 RuvB C-terminal winged helix domain V429_20025 PF17864 RuvB AAA lid domain V429_20025 PF05496 Holliday junction DNA helicase RuvB P-loop domain V429_20030 PF07499 RuvA, C-terminal domain V429_20030 PF01330 RuvA N terminal domain V429_20035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_20035 PF00672 HAMP domain V429_20040 PF04073 Aminoacyl-tRNA editing domain V429_20040 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) V429_20040 PF03129 Anticodon binding domain V429_20045 PF00106 short chain dehydrogenase V429_20060 PF00378 Enoyl-CoA hydratase/isomerase V429_20065 PF10952 Protein of unknown function (DUF2753) V429_20075 PF00132 Bacterial transferase hexapeptide (six repeats) V429_20085 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle V429_20100 PF02594 Uncharacterised ACR, YggU family COG1872 V429_20105 PF02325 YGGT family V429_20110 PF14748 Pyrroline-5-carboxylate reductase dimerisation V429_20110 PF03807 NADP oxidoreductase coenzyme F420-dependent V429_20115 PF01168 Alanine racemase, N-terminal domain V429_20120 PF00437 Type II/IV secretion system protein V429_20125 PF00437 Type II/IV secretion system protein V429_20130 PF03883 Peroxide stress protein YaaA V429_20135 PF00271 Helicase conserved C-terminal domain V429_20135 PF00270 DEAD/DEAH box helicase V429_20140 PF05175 Methyltransferase small domain V429_20145 PF05525 Branched-chain amino acid transport protein V429_20150 PF05525 Branched-chain amino acid transport protein V429_20165 PF01475 Ferric uptake regulator family V429_20170 PF01207 Dihydrouridine synthase (Dus) V429_20185 PF00216 Bacterial DNA-binding protein V429_20190 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ V429_20195 PF07238 PilZ domain V429_20200 PF18073 Rubredoxin metal binding domain V429_20215 PF18429 Domain of unknown function (DUF5609) V429_20225 PF05231 MASE1 V429_20225 PF13426 PAS domain V429_20225 PF08447 PAS fold V429_20225 PF00990 Diguanylate cyclase, GGDEF domain V429_20225 PF00563 EAL domain V429_20225 PF08448 PAS fold V429_20230 PF01048 Phosphorylase superfamily V429_20235 PF01676 Metalloenzyme superfamily V429_20240 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain V429_20240 PF02885 Glycosyl transferase family, helical bundle domain V429_20240 PF00591 Glycosyl transferase family, a/b domain V429_20245 PF01791 DeoC/LacD family aldolase V429_20255 PF07670 Nucleoside recognition V429_20255 PF07662 Na+ dependent nucleoside transporter C-terminus V429_20255 PF01773 Na+ dependent nucleoside transporter N-terminus V429_20260 PF01026 TatD related DNase V429_20265 PF00114 Pilin (bacterial filament) V429_20265 PF07963 Prokaryotic N-terminal methylation motif V429_20270 PF05958 tRNA (Uracil-5-)-methyltransferase V429_20270 PF01938 TRAM domain V429_20275 PF00909 Ammonium Transporter Family V429_20280 PF00589 Phage integrase family V429_20280 PF02899 Phage integrase, N-terminal SAM-like domain V429_20290 PF01381 Helix-turn-helix V429_20290 PF00717 Peptidase S24-like V429_20305 PF06892 Phage regulatory protein CII (CP76) V429_20530 PF03739 Lipopolysaccharide export system permease LptF/LptG V429_20540 PF03739 Lipopolysaccharide export system permease LptF/LptG V429_20545 PF00883 Cytosol aminopeptidase family, catalytic domain V429_20545 PF02789 Cytosol aminopeptidase family, N-terminal domain V429_20550 PF04364 DNA polymerase III chi subunit, HolC V429_20555 PF00133 tRNA synthetases class I (I, L, M and V) V429_20555 PF10458 Valyl tRNA synthetase tRNA binding arm V429_20555 PF08264 Anticodon-binding domain of tRNA V429_20560 PF01595 Cyclin M transmembrane N-terminal domain V429_20560 PF03471 Transporter associated domain V429_20560 PF00571 CBS domain V429_20565 PF09335 SNARE associated Golgi protein V429_20570 PF00768 D-alanyl-D-alanine carboxypeptidase V429_20605 PF02599 Global regulator protein family V429_20610 PF00696 Amino acid kinase family V429_20610 PF01842 ACT domain V429_20610 PF13840 ACT domain V429_20615 PF02272 DHHA1 domain V429_20615 PF01411 tRNA synthetases class II (A) V429_20615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain V429_20620 PF02631 RecX family V429_20625 PF00154 recA bacterial DNA recombination protein V429_20630 PF02464 Competence-damaged protein V429_20650 PF01624 MutS domain I V429_20650 PF05188 MutS domain II V429_20650 PF05192 MutS domain III V429_20650 PF00488 MutS domain V V429_20650 PF05190 MutS family domain IV V429_20655 PF02028 BCCT, betaine/carnitine/choline family transporter V429_20670 PF04222 Protein of unknown function (DUF416) V429_20675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_20680 PF01551 Peptidase family M23 V429_20680 PF08525 Opacity-associated protein A N-terminal motif V429_20680 PF01476 LysM domain V429_20700 PF01297 Zinc-uptake complex component A periplasmic V429_20705 PF00005 ABC transporter V429_20710 PF00950 ABC 3 transport family V429_20720 PF00892 EamA-like transporter family V429_20725 PF03167 Uracil DNA glycosylase superfamily V429_20730 PF00892 EamA-like transporter family V429_20740 PF01541 GIY-YIG catalytic domain V429_20755 PF04012 PspA/IM30 family V429_20760 PF01553 Acyltransferase V429_20785 PF00578 AhpC/TSA family V429_20790 PF00226 DnaJ domain V429_20790 PF00684 DnaJ central domain V429_20790 PF01556 DnaJ C terminal domain V429_20825 PF03989 DNA gyrase C-terminal domain, beta-propeller V429_20825 PF00521 DNA gyrase/topoisomerase IV, subunit A V429_20830 PF01751 Toprim domain V429_20830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_20830 PF00204 DNA gyrase B V429_20830 PF00986 DNA gyrase B subunit, carboxyl terminus V429_20835 PF04632 Fusaric acid resistance protein family V429_20840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion V429_20840 PF00529 HlyD membrane-fusion protein of T1SS V429_20845 PF07869 Protein of unknown function (DUF1656) V429_20855 PF00293 NUDIX domain V429_20860 PF05728 Uncharacterised protein family (UPF0227) V429_20865 PF00149 Calcineurin-like phosphoesterase V429_20870 PF06853 Protein of unknown function (DUF1249) V429_20875 PF00293 NUDIX domain V429_20880 PF02321 Outer membrane efflux protein V429_20885 PF00294 pfkB family carbohydrate kinase V429_20885 PF01467 Cytidylyltransferase-like V429_20890 PF03279 Bacterial lipid A biosynthesis acyltransferase V429_20905 PF01865 Protein of unknown function DUF47 V429_20910 PF01384 Phosphate transporter family V429_20915 PF04073 Aminoacyl-tRNA editing domain V429_20935 PF00155 Aminotransferase class I and II V429_20935 PF00392 Bacterial regulatory proteins, gntR family V429_20940 PF03466 LysR substrate binding domain V429_20940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_20945 PF03788 LrgA family V429_20950 PF04172 LrgB-like family V429_20965 PF12627 Probable RNA and SrmB- binding site of polymerase A V429_20965 PF01743 Poly A polymerase head domain V429_20965 PF01966 HD domain V429_20975 PF13401 AAA domain V429_20975 PF01471 Putative peptidoglycan binding domain V429_20980 PF16537 Type II secretion system protein B V429_20985 PF14815 NUDIX domain V429_20985 PF00730 HhH-GPD superfamily base excision DNA repair protein V429_20985 PF00633 Helix-hairpin-helix motif V429_20985 PF10576 Iron-sulfur binding domain of endonuclease III V429_20990 PF04362 Bacterial Fe(2+) trafficking V429_20995 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain V429_20995 PF01464 Transglycosylase SLT domain V429_21000 PF04076 Bacterial OB fold (BOF) protein V429_21005 PF00657 GDSL-like Lipase/Acylhydrolase V429_21015 PF00691 OmpA family V429_21015 PF01389 OmpA-like transmembrane domain V429_21020 PF03886 ABC-type transport auxiliary lipoprotein component V429_21025 PF02470 MlaD protein V429_21030 PF04403 Paraquat-inducible protein A V429_21035 PF17209 Hfq protein V429_21040 PF13419 Haloacid dehalogenase-like hydrolase V429_21050 PF00990 Diguanylate cyclase, GGDEF domain V429_21050 PF00360 Phytochrome region V429_21050 PF00563 EAL domain V429_21050 PF01590 GAF domain V429_21055 PF00701 Dihydrodipicolinate synthetase family V429_21060 PF08468 Methyltransferase small domain N-terminal V429_21060 PF05175 Methyltransferase small domain V429_21065 PF00483 Nucleotidyl transferase V429_21070 PF00534 Glycosyl transferases group 1 V429_21070 PF08323 Starch synthase catalytic domain V429_21110 PF03553 Na+/H+ antiporter family V429_21115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_21115 PF03466 LysR substrate binding domain V429_21120 PF13416 Bacterial extracellular solute-binding protein V429_21125 PF08402 TOBE domain V429_21125 PF00005 ABC transporter V429_21130 PF00528 Binding-protein-dependent transport system inner membrane component V429_21135 PF00528 Binding-protein-dependent transport system inner membrane component V429_21140 PF00171 Aldehyde dehydrogenase family V429_21150 PF00892 EamA-like transporter family V429_21155 PF01037 Lrp/AsnC ligand binding domain V429_21160 PF14602 Hexapeptide repeat of succinyl-transferase V429_21160 PF12464 Maltose acetyltransferase V429_21165 PF00128 Alpha amylase, catalytic domain V429_21165 PF11941 Domain of unknown function (DUF3459) V429_21170 PF00367 phosphotransferase system, EIIB V429_21170 PF02378 Phosphotransferase system, EIIC V429_21175 PF00356 Bacterial regulatory proteins, lacI family V429_21190 PF00710 Asparaginase, N-terminal V429_21190 PF17763 Glutaminase/Asparaginase C-terminal domain V429_21205 PF02142 MGS-like domain V429_21215 PF00210 Ferritin-like domain V429_21230 PF13718 GNAT acetyltransferase 2 V429_21230 PF05127 Helicase V429_21230 PF08351 Domain of unknown function (DUF1726) V429_21230 PF17176 tRNA-binding domain V429_21235 PF00106 short chain dehydrogenase V429_21240 PF01584 CheW-like domain V429_21240 PF00072 Response regulator receiver domain V429_21285 PF02660 Glycerol-3-phosphate acyltransferase V429_21290 PF02152 Dihydroneopterin aldolase V429_21295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) V429_21305 PF07690 Major Facilitator Superfamily V429_21310 PF02492 CobW/HypB/UreG, nucleotide-binding domain V429_21310 PF07683 Cobalamin synthesis protein cobW C-terminal domain V429_21320 PF01810 LysE type translocator V429_21325 PF03466 LysR substrate binding domain V429_21325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_21335 PF11791 Aconitate B N-terminal domain V429_21335 PF06434 Aconitate hydratase 2 N-terminus V429_21335 PF00330 Aconitase family (aconitate hydratase) V429_21340 PF01734 Patatin-like phospholipase V429_21345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_21345 PF12729 Four helix bundle sensory module for signal transduction V429_21345 PF00672 HAMP domain V429_21350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_21350 PF12729 Four helix bundle sensory module for signal transduction V429_21350 PF00672 HAMP domain V429_21360 PF13426 PAS domain V429_21360 PF08448 PAS fold V429_21360 PF08447 PAS fold V429_21360 PF05231 MASE1 V429_21360 PF00990 Diguanylate cyclase, GGDEF domain V429_21360 PF00563 EAL domain V429_21365 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V429_21365 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_21370 PF00364 Biotin-requiring enzyme V429_21370 PF02817 e3 binding domain V429_21370 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) V429_21375 PF17831 Pyruvate dehydrogenase E1 component middle domain V429_21375 PF00456 Transketolase, thiamine diphosphate binding domain V429_21380 PF00392 Bacterial regulatory proteins, gntR family V429_21380 PF07729 FCD domain V429_21385 PF01510 N-acetylmuramoyl-L-alanine amidase V429_21395 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain V429_21395 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain V429_21405 PF00437 Type II/IV secretion system protein V429_21405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain V429_21410 PF00482 Type II secretion system (T2SS), protein F V429_21415 PF06750 Bacterial Peptidase A24 N-terminal domain V429_21415 PF01478 Type IV leader peptidase family V429_21420 PF01121 Dephospho-CoA kinase V429_21425 PF07072 Cell division protein V429_21430 PF03884 DNA gyrase inhibitor YacG V429_21435 PF00293 NUDIX domain V429_21445 PF07517 SecA DEAD-like domain V429_21445 PF02810 SEC-C motif V429_21445 PF01043 SecA preprotein cross-linking domain V429_21445 PF07516 SecA Wing and Scaffold domain V429_21455 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase V429_21460 PF12327 FtsZ family, C-terminal domain V429_21460 PF00091 Tubulin/FtsZ family, GTPase domain V429_21465 PF02491 SHS2 domain inserted in FTSA V429_21470 PF08478 POTRA domain, FtsQ-type V429_21470 PF03799 Cell division protein FtsQ V429_21475 PF01225 Mur ligase family, catalytic domain V429_21475 PF02875 Mur ligase family, glutamate ligase domain V429_21475 PF08245 Mur ligase middle domain V429_21480 PF03033 Glycosyltransferase family 28 N-terminal domain V429_21480 PF04101 Glycosyltransferase family 28 C-terminal domain V429_21485 PF01098 Cell cycle protein V429_21490 PF02875 Mur ligase family, glutamate ligase domain V429_21490 PF08245 Mur ligase middle domain V429_21495 PF00953 Glycosyl transferase family 4 V429_21495 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 V429_21500 PF08245 Mur ligase middle domain V429_21500 PF01225 Mur ligase family, catalytic domain V429_21500 PF02875 Mur ligase family, glutamate ligase domain V429_21505 PF01225 Mur ligase family, catalytic domain V429_21505 PF08245 Mur ligase middle domain V429_21505 PF02875 Mur ligase family, glutamate ligase domain V429_21510 PF03717 Penicillin-binding Protein dimerisation domain V429_21510 PF00905 Penicillin binding protein transpeptidase domain V429_21515 PF04999 Cell division protein FtsL V429_21520 PF01795 MraW methylase family V429_21525 PF02381 MraZ protein, putative antitoxin-like V429_21530 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V429_21535 PF04348 LppC putative lipoprotein V429_21540 PF02021 Uncharacterised protein family UPF0102 V429_21545 PF13580 SIS domain V429_21550 PF04972 BON domain V429_21555 PF04386 Stringent starvation protein B V429_21560 PF00043 Glutathione S-transferase, C-terminal domain V429_21560 PF02798 Glutathione S-transferase, N-terminal domain V429_21565 PF02167 Cytochrome C1 family V429_21570 PF00033 Cytochrome b/b6/petB V429_21570 PF00032 Cytochrome b(C-terminal)/b6/petD V429_21575 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal V429_21575 PF00355 Rieske [2Fe-2S] domain V429_21580 PF00380 Ribosomal protein S9/S16 V429_21585 PF00572 Ribosomal protein L13 V429_21590 PF03969 AFG1-like ATPase V429_21600 PF00595 PDZ domain V429_21600 PF13180 PDZ domain V429_21605 PF13180 PDZ domain V429_21635 PF01979 Amidohydrolase family V429_21640 PF03841 L-seryl-tRNA selenium transferase V429_21645 PF07071 KDGP aldolase V429_21650 PF00874 PRD domain V429_21650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_21650 PF05043 Mga helix-turn-helix domain V429_21650 PF08279 HTH domain V429_21655 PF00381 PTS HPr component phosphorylation site V429_21660 PF03668 P-loop ATPase protein family V429_21665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 V429_21670 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein V429_21675 PF04552 Sigma-54, DNA binding domain V429_21675 PF00309 Sigma-54 factor, Activator interacting domain (AID) V429_21675 PF04963 Sigma-54 factor, core binding domain V429_21680 PF12399 Branched-chain amino acid ATP-binding cassette transporter V429_21680 PF00005 ABC transporter V429_21685 PF03968 OstA-like protein V429_21690 PF06835 Lipopolysaccharide-assembly, LptC-related V429_21700 PF01380 SIS domain V429_21700 PF00571 CBS domain V429_21705 PF00005 ABC transporter V429_21710 PF02405 Permease MlaE V429_21715 PF02470 MlaD protein V429_21720 PF05494 MlaC protein V429_21730 PF01722 BolA-like protein V429_21735 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) V429_21740 PF01523 Putative modulator of DNA gyrase V429_21745 PF04751 Protein of unknown function (DUF615) V429_21755 PF04363 Protein of unknown function (DUF496) V429_21790 PF07883 Cupin domain V429_21790 PF01381 Helix-turn-helix V429_21795 PF03594 Benzoate membrane transport protein V429_21805 PF02219 Methylenetetrahydrofolate reductase V429_21825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_21825 PF00672 HAMP domain V429_21830 PF03922 OmpW family V429_21845 PF00005 ABC transporter V429_21845 PF17760 UvrA interaction domain V429_21845 PF17755 UvrA DNA-binding domain V429_21850 PF00196 Bacterial regulatory proteins, luxR family V429_21855 PF00436 Single-strand binding protein family V429_21870 PF01545 Cation efflux family V429_21870 PF16916 Dimerisation domain of Zinc Transporter V429_21880 PF00313 'Cold-shock' DNA-binding domain V429_21885 PF07715 TonB-dependent Receptor Plug Domain V429_21885 PF00593 TonB dependent receptor V429_21890 PF00360 Phytochrome region V429_21890 PF00990 Diguanylate cyclase, GGDEF domain V429_21890 PF01590 GAF domain V429_21890 PF00563 EAL domain V429_21895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_21895 PF00672 HAMP domain V429_21895 PF00512 His Kinase A (phospho-acceptor) domain V429_21900 PF00486 Transcriptional regulatory protein, C terminal V429_21900 PF00072 Response regulator receiver domain V429_21925 PF00990 Diguanylate cyclase, GGDEF domain V429_21925 PF17151 Periplasmic sensor domain V429_21935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily V429_21945 PF13538 UvrD-like helicase C-terminal domain V429_21950 PF12705 PD-(D/E)XK nuclease superfamily V429_21950 PF13361 UvrD-like helicase C-terminal domain V429_21950 PF00580 UvrD/REP helicase N-terminal domain V429_21955 PF17946 RecC C-terminal domain V429_21960 PF07681 DoxX V429_21965 PF17954 Quercetinase C-terminal cupin domain V429_21965 PF02678 Pirin V429_21975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_21975 PF03466 LysR substrate binding domain V429_21985 PF00392 Bacterial regulatory proteins, gntR family V429_21985 PF07702 UTRA domain V429_22000 PF00528 Binding-protein-dependent transport system inner membrane component V429_22010 PF08402 TOBE domain V429_22010 PF00005 ABC transporter V429_22020 PF17158 Membrane-associated sensor, integral membrane domain V429_22020 PF00990 Diguanylate cyclase, GGDEF domain V429_22040 PF00583 Acetyltransferase (GNAT) family V429_22045 PF06628 Catalase-related immune-responsive V429_22045 PF00199 Catalase V429_22070 PF00293 NUDIX domain V429_22075 PF01594 AI-2E family transporter V429_22080 PF00106 short chain dehydrogenase V429_22085 PF04371 Porphyromonas-type peptidyl-arginine deiminase V429_22090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_22090 PF03466 LysR substrate binding domain V429_22095 PF02954 Bacterial regulatory protein, Fis family V429_22095 PF00158 Sigma-54 interaction domain V429_22095 PF00989 PAS fold V429_22100 PF00465 Iron-containing alcohol dehydrogenase V429_22105 PF00391 PEP-utilising enzyme, mobile domain V429_22105 PF05524 PEP-utilising enzyme, N-terminal V429_22105 PF00381 PTS HPr component phosphorylation site V429_22105 PF03610 PTS system fructose IIA component V429_22110 PF02734 DAK2 domain V429_22115 PF02733 Dak1 domain V429_22120 PF00860 Permease family V429_22170 PF00009 Elongation factor Tu GTP binding domain V429_22170 PF03144 Elongation factor Tu domain 2 V429_22170 PF03764 Elongation factor G, domain IV V429_22170 PF14492 Elongation Factor G, domain II V429_22170 PF00679 Elongation factor G C-terminus V429_22175 PF00177 Ribosomal protein S7p/S5e V429_22180 PF00164 Ribosomal protein S12/S23 V429_22185 PF04077 DsrH like protein V429_22190 PF02635 DsrE/DsrF-like family V429_22195 PF02635 DsrE/DsrF-like family V429_22200 PF01042 Endoribonuclease L-PSP V429_22205 PF08348 YheO-like PAS domain V429_22205 PF13309 HTH domain V429_22215 PF05000 RNA polymerase Rpb1, domain 4 V429_22215 PF04997 RNA polymerase Rpb1, domain 1 V429_22215 PF00623 RNA polymerase Rpb1, domain 2 V429_22215 PF04998 RNA polymerase Rpb1, domain 5 V429_22215 PF04983 RNA polymerase Rpb1, domain 3 V429_22220 PF04565 RNA polymerase Rpb2, domain 3 V429_22220 PF10385 RNA polymerase beta subunit external 1 domain V429_22220 PF04561 RNA polymerase Rpb2, domain 2 V429_22220 PF04560 RNA polymerase Rpb2, domain 7 V429_22220 PF00562 RNA polymerase Rpb2, domain 6 V429_22220 PF04563 RNA polymerase beta subunit V429_22225 PF00542 Ribosomal protein L7/L12 C-terminal domain V429_22225 PF16320 Ribosomal protein L7/L12 dimerisation domain V429_22230 PF00466 Ribosomal protein L10 V429_22235 PF00687 Ribosomal protein L1p/L10e family V429_22240 PF03946 Ribosomal protein L11, N-terminal domain V429_22240 PF00298 Ribosomal protein L11, RNA binding domain V429_22245 PF02357 Transcription termination factor nusG V429_22245 PF00467 KOW motif V429_22250 PF00584 SecE/Sec61-gamma subunits of protein translocation complex V429_22275 PF00485 Phosphoribulokinase / Uridine kinase family V429_22280 PF02237 Biotin protein ligase C terminal domain V429_22280 PF03099 Biotin/lipoate A/B protein ligase family V429_22280 PF08279 HTH domain V429_22285 PF01565 FAD binding domain V429_22285 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain V429_22290 PF02080 TrkA-C domain V429_22290 PF02254 TrkA-N domain V429_22295 PF02386 Cation transport protein V429_22300 PF12833 Helix-turn-helix domain V429_22300 PF12852 Cupin V429_22315 PF01751 Toprim domain V429_22315 PF01131 DNA topoisomerase V429_22320 PF03264 NapC/NirT cytochrome c family, N-terminal region V429_22325 PF01568 Molydopterin dinucleotide binding domain V429_22325 PF18364 Molybdopterin oxidoreductase N-terminal domain V429_22325 PF00384 Molybdopterin oxidoreductase V429_22335 PF08918 PhoQ Sensor V429_22335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_22340 PF00072 Response regulator receiver domain V429_22340 PF00486 Transcriptional regulatory protein, C terminal V429_22355 PF01794 Ferric reductase like transmembrane component V429_22360 PF00174 Oxidoreductase molybdopterin binding domain V429_22370 PF06496 Protein of unknown function (DUF1097) V429_22375 PF00072 Response regulator receiver domain V429_22375 PF00158 Sigma-54 interaction domain V429_22385 PF00512 His Kinase A (phospho-acceptor) domain V429_22385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_22405 PF00478 IMP dehydrogenase / GMP reductase domain V429_22405 PF00571 CBS domain V429_22410 PF10063 Uncharacterized integral membrane protein (DUF2301) V429_22420 PF01037 Lrp/AsnC ligand binding domain V429_22425 PF03590 Aspartate-ammonia ligase V429_22435 PF17871 AAA lid domain V429_22435 PF07724 AAA domain (Cdc48 subfamily) V429_22435 PF00004 ATPase family associated with various cellular activities (AAA) V429_22435 PF02861 Clp amino terminal domain, pathogenicity island component V429_22435 PF10431 C-terminal, D2-small domain, of ClpB protein V429_22445 PF00849 RNA pseudouridylate synthase V429_22445 PF01479 S4 domain V429_22450 PF13525 Outer membrane lipoprotein V429_22455 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_22455 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain V429_22460 PF00375 Sodium:dicarboxylate symporter family V429_22465 PF03313 Serine dehydratase alpha chain V429_22470 PF13309 HTH domain V429_22470 PF08348 YheO-like PAS domain V429_22480 PF02233 NAD(P) transhydrogenase beta subunit V429_22485 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch V429_22485 PF05222 Alanine dehydrogenase/PNT, N-terminal domain V429_22485 PF01262 Alanine dehydrogenase/PNT, C-terminal domain V429_22490 PF00465 Iron-containing alcohol dehydrogenase V429_22495 PF12833 Helix-turn-helix domain V429_22495 PF06719 AraC-type transcriptional regulator N-terminus V429_22500 PF08212 Lipocalin-like domain V429_22505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_22505 PF00672 HAMP domain V429_22505 PF02743 Cache domain V429_22510 PF02666 Phosphatidylserine decarboxylase V429_22525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V429_22525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V429_22530 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain V429_22530 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain V429_22535 PF02863 Arginine repressor, C-terminal domain V429_22535 PF01316 Arginine repressor, DNA binding domain V429_22540 PF03606 C4-dicarboxylate anaerobic carrier V429_22545 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain V429_22545 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain V429_22550 PF00696 Amino acid kinase family V429_22575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_22575 PF02743 Cache domain V429_22575 PF00672 HAMP domain V429_22580 PF02653 Branched-chain amino acid transport system / permease component V429_22585 PF00005 ABC transporter V429_22590 PF13407 Periplasmic binding protein domain V429_22595 PF02836 Glycosyl hydrolases family 2, TIM barrel domain V429_22595 PF00703 Glycosyl hydrolases family 2 V429_22595 PF16353 Domain of unknown function(DUF4981) V429_22595 PF02929 Beta galactosidase small chain V429_22595 PF02837 Glycosyl hydrolases family 2, sugar binding domain V429_22600 PF00356 Bacterial regulatory proteins, lacI family V429_22605 PF16363 GDP-mannose 4,6 dehydratase V429_22610 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain V429_22610 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain V429_22615 PF10509 Galactokinase galactose-binding signature V429_22615 PF08544 GHMP kinases C terminal V429_22615 PF00288 GHMP kinases N terminal domain V429_22620 PF01263 Aldose 1-epimerase V429_22625 PF00248 Aldo/keto reductase family V429_22630 PF02673 Bacitracin resistance protein BacA V429_22635 PF12973 ChrR Cupin-like domain V429_22640 PF04545 Sigma-70, region 4 V429_22640 PF04542 Sigma-70 region 2 V429_22650 PF05746 DALR anticodon binding domain V429_22650 PF00750 tRNA synthetases class I (R) V429_22650 PF03485 Arginyl tRNA synthetase N terminal domain V429_22660 PF00227 Proteasome subunit V429_22665 PF10431 C-terminal, D2-small domain, of ClpB protein V429_22665 PF00004 ATPase family associated with various cellular activities (AAA) V429_22665 PF07724 AAA domain (Cdc48 subfamily) V429_22670 PF07690 Major Facilitator Superfamily V429_22675 PF03466 LysR substrate binding domain V429_22675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family V429_22680 PF04324 BFD-like [2Fe-2S] binding domain V429_22680 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain V429_22680 PF07992 Pyridine nucleotide-disulphide oxidoreductase V429_22680 PF01077 Nitrite and sulphite reductase 4Fe-4S domain V429_22680 PF18267 Rubredoxin NAD+ reductase C-terminal domain V429_22690 PF13806 Rieske-like [2Fe-2S] domain V429_22695 PF01226 Formate/nitrite transporter V429_22700 PF14824 Sirohaem biosynthesis protein central V429_22700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases V429_22700 PF10414 Sirohaem synthase dimerisation region V429_22705 PF03448 MgtE intracellular N domain V429_22705 PF01769 Divalent cation transporter V429_22705 PF00571 CBS domain V429_22710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain V429_22710 PF00672 HAMP domain V429_22715 PF03737 Aldolase/RraA V429_22725 PF02592 Putative vitamin uptake transporter V429_22735 PF02696 Uncharacterized ACR, YdiU/UPF0061 family V429_22740 PF00034 Cytochrome c V429_22745 PF00570 HRDC domain V429_22745 PF16124 RecQ zinc-binding V429_22745 PF00271 Helicase conserved C-terminal domain V429_22745 PF09382 RQC domain V429_22745 PF00270 DEAD/DEAH box helicase V429_22750 PF03061 Thioesterase superfamily V429_22765 PF03475 3-alpha domain V429_22765 PF03473 MOSC domain V429_22770 PF00528 Binding-protein-dependent transport system inner membrane component V429_22775 PF00528 Binding-protein-dependent transport system inner membrane component V429_22780 PF08402 TOBE domain V429_22780 PF00005 ABC transporter V429_22785 PF13416 Bacterial extracellular solute-binding protein V429_22790 PF13416 Bacterial extracellular solute-binding protein V429_22795 PF00202 Aminotransferase class-III V429_22800 PF00120 Glutamine synthetase, catalytic domain V429_22805 PF01258 Prokaryotic dksA/traR C4-type zinc finger V429_22820 PF05981 CreA protein V429_22825 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain V429_22825 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain V429_22830 PF00012 Hsp70 protein V429_22845 PF00128 Alpha amylase, catalytic domain V429_22845 PF02903 Alpha amylase, N-terminal ig-like domain V429_22860 PF05958 tRNA (Uracil-5-)-methyltransferase V429_22865 PF00486 Transcriptional regulatory protein, C terminal V429_22865 PF00072 Response regulator receiver domain V429_22870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_22870 PF00512 His Kinase A (phospho-acceptor) domain V429_22870 PF00672 HAMP domain V429_22880 PF03949 Malic enzyme, NAD binding domain V429_22880 PF00390 Malic enzyme, N-terminal domain V429_22885 PF13460 NAD(P)H-binding V429_22885 PF11066 Protein of unknown function (DUF2867) V429_22890 PF01197 Ribosomal protein L31 V429_22895 PF18319 PriA DNA helicase Cys-rich region (CRR) domain V429_22895 PF18074 Primosomal protein N C-terminal domain V429_22895 PF17764 3′ DNA-binding domain (3′BD) V429_22895 PF00271 Helicase conserved C-terminal domain V429_22895 PF00270 DEAD/DEAH box helicase V429_22905 PF00691 OmpA family V429_22905 PF01389 OmpA-like transmembrane domain V429_22910 PF00291 Pyridoxal-phosphate dependent enzyme V429_22910 PF00585 C-terminal regulatory domain of Threonine dehydratase V429_22915 PF00920 Dehydratase family V429_22920 PF01063 Amino-transferase class IV V429_22930 PF00205 Thiamine pyrophosphate enzyme, central domain V429_22930 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain V429_22930 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain V429_22935 PF01078 Magnesium chelatase, subunit ChlI V429_22935 PF13335 Magnesium chelatase, subunit ChlI C-terminal V429_22940 PF01553 Acyltransferase V429_22945 PF01553 Acyltransferase V429_22950 PF04463 Protein of unknown function (DUF523) V429_22960 PF00857 Isochorismatase family V429_22965 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain V429_22965 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family V429_22975 PF00005 ABC transporter V429_22980 PF00528 Binding-protein-dependent transport system inner membrane component V429_22985 PF01323 DSBA-like thioredoxin domain V429_22990 PF01636 Phosphotransferase enzyme family V429_22995 PF13746 4Fe-4S dicluster domain V429_22995 PF12801 4Fe-4S binding domain V429_22995 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase V429_23000 PF06288 Protein of unknown function (DUF1040) V429_23005 PF00563 EAL domain V429_23005 PF01590 GAF domain V429_23005 PF00990 Diguanylate cyclase, GGDEF domain V429_23005 PF00360 Phytochrome region V429_23010 PF09278 MerR, DNA binding V429_23010 PF00376 MerR family regulatory protein V429_23015 PF00403 Heavy-metal-associated domain V429_23020 PF00156 Phosphoribosyl transferase domain V429_23025 PF03725 3' exoribonuclease family, domain 2 V429_23025 PF01138 3' exoribonuclease family, domain 1 V429_23030 PF03755 YicC-like family, N-terminal region V429_23030 PF08340 Domain of unknown function (DUF1732) V429_23050 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) V429_23065 PF01370 NAD dependent epimerase/dehydratase family V429_23070 PF00440 Bacterial regulatory proteins, tetR family V429_23070 PF08360 QacR-like protein, C-terminal region V429_23075 PF00155 Aminotransferase class I and II V429_23080 PF00107 Zinc-binding dehydrogenase V429_23080 PF08240 Alcohol dehydrogenase GroES-like domain V429_23085 PF13442 Cytochrome C oxidase, cbb3-type, subunit III V429_23090 PF03707 Bacterial signalling protein N terminal repeat V429_23090 PF00563 EAL domain V429_23090 PF00990 Diguanylate cyclase, GGDEF domain V429_23095 PF13361 UvrD-like helicase C-terminal domain V429_23095 PF00580 UvrD/REP helicase N-terminal domain V429_23100 PF00266 Aminotransferase class-V V429_23105 PF02657 Fe-S metabolism associated domain V429_23110 PF00899 ThiF family V429_23145 PF03544 Gram-negative bacterial TonB protein C-terminal V429_23150 PF02472 Biopolymer transport protein ExbD/TolR V429_23155 PF01618 MotA/TolQ/ExbB proton channel family V429_23160 PF01618 MotA/TolQ/ExbB proton channel family V429_23170 PF00196 Bacterial regulatory proteins, luxR family V429_23170 PF03472 Autoinducer binding domain V429_23175 PF01380 SIS domain V429_23180 PF00455 DeoR C terminal sensor domain V429_23180 PF08220 DeoR-like helix-turn-helix domain V429_23185 PF00486 Transcriptional regulatory protein, C terminal V429_23185 PF00072 Response regulator receiver domain V429_23190 PF00512 His Kinase A (phospho-acceptor) domain V429_23190 PF00672 HAMP domain V429_23190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase V429_23195 PF00905 Penicillin binding protein transpeptidase domain V429_23200 PF06123 Inner membrane protein CreD V429_23205 PF00132 Bacterial transferase hexapeptide (six repeats) V429_23205 PF14602 Hexapeptide repeat of succinyl-transferase V429_23205 PF12804 MobA-like NTP transferase domain V429_23210 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain V429_23210 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain V429_23215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V429_23215 PF02874 ATP synthase alpha/beta family, beta-barrel domain V429_23220 PF00231 ATP synthase V429_23225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain V429_23225 PF00306 ATP synthase alpha/beta chain, C terminal domain V429_23225 PF02874 ATP synthase alpha/beta family, beta-barrel domain V429_23230 PF00213 ATP synthase delta (OSCP) subunit V429_23235 PF00430 ATP synthase B/B' CF(0) V429_23240 PF00137 ATP synthase subunit C V429_23245 PF00119 ATP synthase A chain V429_23255 PF17762 HTH domain found in ParB protein V429_23255 PF02195 ParB-like nuclease domain V429_23260 PF13614 AAA domain V429_23265 PF02527 rRNA small subunit methyltransferase G V429_23270 PF01134 Glucose inhibited division protein A V429_23270 PF13932 GidA associated domain V429_23275 PF00258 Flavodoxin V429_23280 PF00593 TonB dependent receptor V429_23280 PF07715 TonB-dependent Receptor Plug Domain V429_23285 PF00005 ABC transporter V429_23290 PF00005 ABC transporter V429_23300 PF01032 FecCD transport family V429_23305 PF01926 50S ribosome-binding GTPase V429_23305 PF12631 MnmE helical domain V429_23305 PF10396 GTP-binding protein TrmE N-terminus V429_23310 PF14849 YidC periplasmic domain V429_23310 PF02096 60Kd inner membrane protein V429_23315 PF00825 Ribonuclease P V429_23320 PF00468 Ribosomal protein L34 V429_23330 PF00528 Binding-protein-dependent transport system inner membrane component V429_23335 PF00497 Bacterial extracellular solute-binding proteins, family 3