locus_tag	old_locus_tag	gene	Name	start	end	strand	product	note	type	ID	NCBI
AHA_0001	AHA_0001	dnaA-1	dnaA-1	223	1593	+	chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308%3B match to protein family HMM TIGR00362	gene	gene0	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0001
AHA_0002	AHA_0002	dnaN	dnaN	1677	2780	+	DNA polymerase III%2C beta subunit	identified by match to protein family HMM PF00712%3B match to protein family HMM PF02767%3B match to protein family HMM PF02768%3B match to protein family HMM TIGR00663	gene	gene1	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0002
AHA_0003	AHA_0003	recF	recF	2783	3886	+	DNA replication and repair protein RecF	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00611	gene	gene2	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0003
AHA_0004	AHA_0004	gyrB	gyrB	3883	6294	+	DNA gyrase%2C B subunit	identified by similarity to SP:P06982%3B match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF01751%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01059	gene	gene3	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0004
AHA_0005	AHA_0005		AHA_0005	6409	6786	-	glyoxalase family protein superfamily	identified by match to protein family HMM PF00903	gene	gene4	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0005
AHA_0006	AHA_0006		AHA_0006	6853	7557	-	transcriptional regulator		gene	gene5	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0006
AHA_0007	AHA_0007		AHA_0007	7792	8205	+	16 kDa heat shock protein A	identified by match to protein family HMM PF00011	gene	gene6	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0007
AHA_0008	AHA_0008		AHA_0008	8298	8735	+	16 kDa heat shock protein A	identified by match to protein family HMM PF00011	gene	gene7	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0008
AHA_0009	AHA_0009		AHA_0009	8809	10059	-	valine--pyruvate aminotransferase	identified by match to protein family HMM PF00155	gene	gene8	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0009
AHA_0010	AHA_0010		AHA_0010	10506	11330	-	transcriptional regulator%2C AraC/XylS family	identified by match to protein family HMM PF00165	gene	gene10	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0010
AHA_0011	AHA_0011		AHA_0011	10343	10576	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene9	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0011
AHA_0012	AHA_0012		AHA_0012	11423	12550	+	multidrug resistance protein D	identified by match to protein family HMM PF07690	gene	gene11	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0012
AHA_0013	AHA_0013		AHA_0013	12555	13238	-	KDP operon transcriptional regulatory protein KdpE	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene12	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0013
AHA_0014	AHA_0014		AHA_0014	13269	15857	-	sensory kinase in two-component regulatory system wtih KdpE	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM PF02702	gene	gene13	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0014
AHA_0015	AHA_0015	kdpC	kdpC	15961	16488	-	K+-transporting ATPase%2C C subunit	identified by match to protein family HMM PF02669%3B match to protein family HMM TIGR00681	gene	gene14	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0015
AHA_0016	AHA_0016	kdpB	kdpB	16549	18606	-	K+-transporting ATPase%2C B subunit	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01497	gene	gene15	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0016
AHA_0017	AHA_0017	kdpA	kdpA	18662	20344	-	K+-transporting ATPase%2C A subunit	identified by match to protein family HMM PF03814%3B match to protein family HMM TIGR00680	gene	gene16	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0017
AHA_0018	AHA_0018		AHA_0018	20355	20432	-	putative K+-transporting ATPase%2C F subunit KdpF		gene	gene17	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0018
AHA_0019	AHA_0019	gor	gor	20671	22020	-	glutathione-disulfide reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01421	gene	gene18	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0019
AHA_0020	AHA_0020		AHA_0020	22097	24094	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene19	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0020
AHA_0021	AHA_0021		AHA_0021	24187	27267	-	acriflavin resistance plasma membrane protein	identified by match to protein family HMM PF00873	gene	gene20	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0021
AHA_0022	AHA_0022		AHA_0022	27283	28389	-	RND transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family%2C MFP subunit	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene21	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0022
AHA_0023	AHA_0023		AHA_0023	28422	29045	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene22	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0023
AHA_0024	AHA_0024		AHA_0024	29246	29322	+	tRNA-Arg		tRNA	gene23	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0024
AHA_0025	AHA_0025		AHA_0025	29373	29448	+	tRNA-His		tRNA	gene24	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0025
AHA_0026	AHA_0026		AHA_0026	29469	29554	+	tRNA-Leu		tRNA	gene25	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0026
AHA_0027	AHA_0027		AHA_0027	29628	29704	+	tRNA-Pro		tRNA	gene26	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0027
AHA_0028	AHA_0028		AHA_0028	29998	30399	+	ricin-type beta-trefoil lectin domain%2C putative	identified by match to protein family HMM PF00652	gene	gene27	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0028
AHA_0029	AHA_0029	pyk-1	pyk-1	30404	31483	-	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM TIGR01064	gene	gene28	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0029
AHA_0030	AHA_0030		AHA_0030	31551	32888	-	sugar phosphate permease	identified by match to protein family HMM PF07690	gene	gene29	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0030
AHA_0031	AHA_0031		AHA_0031	33247	34461	+	ABC-type Fe3+ transport system%2C periplasmic component	identified by match to protein family HMM PF01547	gene	gene30	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0031
AHA_0032	AHA_0032		AHA_0032	34458	36890	+	hypothetical phosphoglycerate transport regulatory protein PgtB	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene31	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0032
AHA_0033	AHA_0033		AHA_0033	36874	38151	+	C4-dicarboxylate transport transcriptional regulatory protein DctD	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene32	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0033
AHA_0034	AHA_0034		AHA_0034	38203	38517	+	conserved hypothetical protein		gene	gene33	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0034
AHA_0035	AHA_0035		AHA_0035	38565	39377	-	hydrolase%2C Cof family	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene34	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0035
AHA_0036	AHA_0036		AHA_0036	39471	40511	-	lysophospholipase L2	identified by match to protein family HMM PF00561	gene	gene35	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0036
AHA_0037	AHA_0037		AHA_0037	40508	41173	-	chloramphenicol acetyltransferase	identified by match to protein family HMM PF00132	gene	gene36	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0037
AHA_0038	AHA_0038		AHA_0038	41173	41934	-	tRNA guanosine-2'-O-methyltransferase	identified by match to protein family HMM PF00588	gene	gene37	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0038
AHA_0039	AHA_0039		AHA_0039	42129	44246	-	guanosine-3'%2C5'-bis(diphosphate) 3'-pyrophosphohydrolase ((ppGpp)ase)	identified by match to protein family HMM PF01842%3B match to protein family HMM PF01966%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691	gene	gene38	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0039
AHA_0040	AHA_0040	rpoZ	rpoZ	44384	44659	-	DNA-directed RNA polymerase%2C omega subunit	identified by match to protein family HMM PF01192%3B match to protein family HMM TIGR00690	gene	gene39	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0040
AHA_0041	AHA_0041		AHA_0041	44739	45593	-	guanylate kinase	identified by match to protein family HMM PF00625	gene	gene40	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0041
AHA_0042	AHA_0042		AHA_0042	45637	46719	-	lipopolysaccharide heptosyltransferase	identified by match to protein family HMM PF01075	gene	gene41	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0042
AHA_0043	AHA_0043	kdkA	kdkA	46888	47601	+	3-deoxy-D-manno-octulosonic acid kinase	identified by similarity to SP:O86224%3B match to protein family HMM PF01163%3B match to protein family HMM PF06293	gene	gene42	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0043
AHA_0044	AHA_0044		AHA_0044	47729	48535	+	sensory box/GGDEF family protein%2C putative	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene43	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0044
AHA_0045	AHA_0045		AHA_0045	48543	49397	-	hypothetical membrane protein YigM	identified by match to protein family HMM PF00892	gene	gene44	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0045
AHA_0046	AHA_0046		AHA_0046	49441	49899	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene45	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0046
AHA_0047	AHA_0047		AHA_0047	50054	50215	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene46	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0047
AHA_0048	AHA_0048		AHA_0048	50200	51129	-	putative membrane protein	identified by match to protein family HMM PF00892	gene	gene47	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0048
AHA_0049	AHA_0049	trpS-1	trpS-1	52144	53157	-	tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233	gene	gene49	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0049
AHA_0050	AHA_0050		AHA_0050	51191	52165	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene48	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0050
AHA_0051	AHA_0051		AHA_0051	53349	53783	-	universal stress protein A	identified by match to protein family HMM PF00582	gene	gene50	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0051
AHA_0052	AHA_0052		AHA_0052	54250	55437	+	trans-2-enoyl-CoA reductase	identified by match to protein family HMM PF07055	gene	gene51	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0052
AHA_0053	AHA_0053		AHA_0053	55453	57243	-	tetratricopeptide repeat family	identified by match to protein family HMM PF00990%3B match to protein family HMM PF07721%3B match to protein family HMM TIGR00254	gene	gene52	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0053
AHA_0054	AHA_0054		AHA_0054	57348	57977	+	ferritin	identified by match to protein family HMM PF00210	gene	gene53	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0054
AHA_0055	AHA_0055		AHA_0055	58135	59322	+	conserved hypothetical protein	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00275	gene	gene54	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0055
AHA_0056	AHA_0056		AHA_0056	59510	60730	-	fosmidomycin resistance protein	identified by match to protein family HMM PF07690	gene	gene55	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0056
AHA_0057	AHA_0057		AHA_0057	60918	61556	+	lysine exporter protein	identified by match to protein family HMM PF01810	gene	gene56	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0057
AHA_0058	AHA_0058		AHA_0058	61600	62346	-	conserved hypothetical protein		gene	gene57	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0058
AHA_0059	AHA_0059		AHA_0059	62289	63905	-	conserved hypothetical protein		gene	gene58	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0059
AHA_0060	AHA_0060		AHA_0060	63908	66385	-	conserved hypothetical protein		gene	gene59	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0060
AHA_0061	AHA_0061		AHA_0061	66437	67102	-	conserved hypothetical protein		gene	gene60	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0061
AHA_0062	AHA_0062	matB	matB	67162	67737	-	fimbrillin MatB	identified by similarity to GB:AAK01671.1	gene	gene61	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0062
AHA_0063	AHA_0063	evgA	evgA	68337	68960	+	positive transcription regulator EvgA	identified by similarity to SP:P30854%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene62	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0063
AHA_0064	AHA_0064		AHA_0064	68963	72550	+	virulence sensor protein BvgS	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene63	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0064
AHA_0065	AHA_0065		AHA_0065	72586	73026	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene64	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0065
AHA_0066	AHA_0066		AHA_0066	73217	74872	+	sensor histidine kinase	identified by match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694	gene	gene65	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0066
AHA_0067	AHA_0067		AHA_0067	75002	75733	+	response regulator receiver domain	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene66	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0067
AHA_0068	AHA_0068		AHA_0068	75855	77033	+	inner membrane protein YhjX	identified by match to protein family HMM PF07690	gene	gene67	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0068
AHA_0069	AHA_0069	purK	purK	77107	78231	-	phosphoribosylaminoimidazole carboxylase%2C ATPase subunit	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01161	gene	gene68	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0069
AHA_0070	AHA_0070	purE-1	purE-1	78228	78737	-	phosphoribosylaminoimidazole carboxylase%2C catalytic subunit	identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162	gene	gene69	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0070
AHA_0071	AHA_0071		AHA_0071	78800	79102	-	conserved hypothetical protein		gene	gene70	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0071
AHA_0072	AHA_0072		AHA_0072	79107	80180	-	sodium bicarbonate cotransporter	identified by match to protein family HMM PF05982	gene	gene71	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0072
AHA_0073	AHA_0073		AHA_0073	80145	81047	+	regulatory protein%2C LysR:LysR%2C substrate-binding	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene72	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0073
AHA_0074	AHA_0074		AHA_0074	81312	83147	+	vitamin B12 transporter BtuB	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715	gene	gene73	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0074
AHA_0075	AHA_0075	murI	murI	83265	84059	+	glutamate racemase	identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00067	gene	gene74	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0075
AHA_0076	AHA_0076		AHA_0076	84078	84569	-	RNA-binding protein	identified by match to protein family HMM PF00076	gene	gene75	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0076
AHA_0077	AHA_0077	rrsA	rrsA	85180	86716	+	16S ribosomal RNA		rRNA	gene76	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0077
AHA_0078	AHA_0078		AHA_0078	86944	87019	+	tRNA-Glu		tRNA	gene77	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0078
AHA_0079	AHA_0079	rrlA	rrlA	87251	90146	+	23S ribosomal RNA		rRNA	gene78	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0079
AHA_0080	AHA_0080	rrfA	rrfA	90264	90381	+	5S ribosomal RNA		rRNA	gene79	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0080
AHA_0081	AHA_0081		AHA_0081	90487	90562	+	tRNA-Thr		tRNA	gene80	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0081
AHA_0082	AHA_0082	codA	codA	90960	92225	+	cytosine deaminase	identified by similarity to SP:P25524%3B match to protein family HMM PF01979%3B match to protein family HMM PF07969	gene	gene81	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0082
AHA_0083	AHA_0083	crcB	crcB	92274	92690	+	CrcB protein	identified by match to protein family HMM PF02537%3B match to protein family HMM TIGR00494	gene	gene82	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0083
AHA_0084	AHA_0084		AHA_0084	92756	93508	+	ubiquinone/menaquinone biosynthesis methyltransferase UbiE	identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR01934	gene	gene83	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0084
AHA_0085	AHA_0085		AHA_0085	93517	94125	+	conserved hypothetical protein	identified by similarity to GB:BAC58359.1%3B match to protein family HMM PF06843	gene	gene84	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0085
AHA_0086	AHA_0086	ubiB	ubiB	94125	95765	+	2-polyprenylphenol 6-hydroxylase	identified by match to protein family HMM PF03109%3B match to protein family HMM TIGR01982	gene	gene85	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0086
AHA_0087	AHA_0087	tatA	tatA	95806	96054	+	twin arginine-targeting protein translocase TatA	identified by similarity to SP:P69428%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01411	gene	gene86	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0087
AHA_0088	AHA_0088	tatB	tatB	96058	96501	+	twin arginine-targeting protein translocase TatB	identified by similarity to SP:P69425%3B match to protein family HMM PF02416%3B match to protein family HMM TIGR01410	gene	gene87	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0088
AHA_0089	AHA_0089	tatC	tatC	96498	97253	+	twin arginine-targeting protein translocase TatC	identified by similarity to SP:P69423%3B match to protein family HMM PF00902%3B match to protein family HMM TIGR00945	gene	gene88	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0089
AHA_0090	AHA_0090		AHA_0090	97365	98150	+	deoxyribonuclease TatD	identified by match to protein family HMM PF01026	gene	gene89	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0090
AHA_0091	AHA_0091	hemB	hemB	98154	99173	+	delta-aminolevulinic acid dehydratase	identified by match to protein family HMM PF00490	gene	gene90	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0091
AHA_0092	AHA_0092	prlC	prlC	99396	101438	+	oligopeptidase A	identified by similarity to SP:P27298%3B match to protein family HMM PF01432	gene	gene91	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0092
AHA_0093	AHA_0093		AHA_0093	101643	104186	+	MorA	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene92	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0093
AHA_0094	AHA_0094		AHA_0094	104281	105027	+	conserved hypothetical protein	identified by match to protein family HMM PF04445	gene	gene93	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0094
AHA_0095	AHA_0095		AHA_0095	105382	106371	-	conserved hypothetical protein		gene	gene94	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0095
AHA_0096	AHA_0096		AHA_0096	106568	108058	-	guanosine-5'-triphosphate%2C3'-diphosphate pyrophosphatase	identified by match to protein family HMM PF02541	gene	gene95	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0096
AHA_0097	AHA_0097		AHA_0097	108073	109362	-	ATP-dependent RNA helicase RhlB	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene96	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0097
AHA_0098	AHA_0098	trx	trx	109476	109802	+	thioredoxin	identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068	gene	gene97	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0098
AHA_0099	AHA_0099	rho	rho	110010	111275	+	transcription termination factor Rho	identified by match to protein family HMM PF00006%3B match to protein family HMM PF07497%3B match to protein family HMM PF07498%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00767	gene	gene98	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0099
AHA_0100	AHA_0100		AHA_0100	111589	112389	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene99	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0100
AHA_0101	AHA_0101		AHA_0101	112420	113889	+	3-octaprenyl-4-hydroxybenzoate carboxy-lyase	identified by match to protein family HMM PF01977%3B match to protein family HMM TIGR00148	gene	gene100	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0101
AHA_0102	AHA_0102		AHA_0102	114058	114756	+	NAD(P)H-flavin reductase (FMN reductase)	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene101	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0102
AHA_0103	AHA_0103		AHA_0103	114886	115143	-	conserved hypothetical protein	identified by match to protein family HMM PF04380	gene	gene102	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0103
AHA_0104	AHA_0104		AHA_0104	115445	117862	+	extracellular lipase		gene	gene103	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0104
AHA_0105	AHA_0105		AHA_0105	118002	118835	-	GlpG protein	identified by match to protein family HMM PF01694	gene	gene104	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0105
AHA_0106	AHA_0106		AHA_0106	118832	119155	-	thiosulfate sulfurtransferase GlpE	identified by match to protein family HMM PF00581	gene	gene105	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0106
AHA_0107	AHA_0107		AHA_0107	119909	120742	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311	gene	gene107	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0107
AHA_0108	AHA_0108		AHA_0108	119226	119912	+	efflux protein%2C LysE family	identified by match to protein family HMM PF01810	gene	gene106	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0108
AHA_0109	AHA_0109		AHA_0109	120746	121447	-	high-affinity branched-chain amino acid ABC transporter%2C ATP-binding protein LivF	identified by match to protein family HMM PF00005	gene	gene108	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0109
AHA_0110	AHA_0110		AHA_0110	121458	122231	-	high-affinity branched-chain amino acid ABC transporter%2C ATP-binding protein LivG	identified by match to protein family HMM PF00005	gene	gene109	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0110
AHA_0111	AHA_0111		AHA_0111	122228	123499	-	high-affinity branched-chain amino acid ABC transporter%2C permease protein LivM	identified by match to protein family HMM PF02653	gene	gene110	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0111
AHA_0112	AHA_0112		AHA_0112	123496	124422	-	high-affinity branched-chain amino acid transport system permeaseprotein LivH	identified by match to protein family HMM PF02653	gene	gene111	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0112
AHA_0113	AHA_0113		AHA_0113	124487	125590	-	Leu/Ile/Val-binding protein	identified by match to protein family HMM PF01094	gene	gene112	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0113
AHA_0114	AHA_0114		AHA_0114	126044	127048	+	ribose operon repressor	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene113	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0114
AHA_0115	AHA_0115		AHA_0115	127118	128437	-	maltose-6'-phosphate glucosidase	identified by match to protein family HMM PF02056	gene	gene114	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0115
AHA_0116	AHA_0116		AHA_0116	128440	130026	-	pts system maltose-specific eiicb component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00852%3B match to protein family HMM TIGR02005	gene	gene115	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0116
AHA_0117	AHA_0117		AHA_0117	130311	131018	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702	gene	gene116	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0117
AHA_0118	AHA_0118		AHA_0118	131099	132625	-	anaerobic nitric oxide reductase transcription regulator NorR	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590	gene	gene117	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0118
AHA_0119	AHA_0119	norV	norV	132796	134283	+	anaerobic nitric oxide reductase flavorubredoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM PF00301%3B match to protein family HMM PF00753	gene	gene118	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0119
AHA_0120	AHA_0120	norW	norW	134280	135446	+	nitric oxide reductase FlRd-NAD(+) reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene119	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0120
AHA_0121	AHA_0121		AHA_0121	135498	135839	+	tellurite resistance protein TehB		gene	gene120	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0121
AHA_0122	AHA_0122		AHA_0122	135961	137178	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene121	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0122
AHA_0123	AHA_0123		AHA_0123	137466	138692	+	Low affinity tryptophan permease	identified by match to protein family HMM PF03222%3B match to protein family HMM TIGR00837	gene	gene122	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0123
AHA_0124	AHA_0124		AHA_0124	138783	139262	-	phenylalanyl-tRNA synthetase beta subunit		gene	gene123	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0124
AHA_0125	AHA_0125		AHA_0125	139376	139780	-	conserved hypothetical protein	identified by similarity to SP:P76002	gene	gene124	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0125
AHA_0126	AHA_0126		AHA_0126	140006	140512	+	putative kinase		gene	gene125	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0126
AHA_0127	AHA_0127	glyS	glyS	141378	143447	-	glycyl-tRNA synthetase%2C beta subunit	identified by match to protein family HMM PF02092%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00211	gene	gene126	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0127
AHA_0128	AHA_0128	glyQ	glyQ	143457	144380	-	glycyl-tRNA synthetase%2C alpha subunit	identified by match to protein family HMM PF02091%3B match to protein family HMM TIGR00388	gene	gene127	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0128
AHA_0129	AHA_0129		AHA_0129	144590	145171	+	DNA-3-methyladenine glycosylase I	identified by match to protein family HMM PF03352%3B match to protein family HMM TIGR00624	gene	gene128	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0129
AHA_0130	AHA_0130		AHA_0130	145248	147284	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF01814%3B match to protein family HMM TIGR02481	gene	gene129	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0130
AHA_0131	AHA_0131		AHA_0131	147537	148193	+	inner membrane lipoprotein YiaD	identified by match to protein family HMM PF00691%3B match to protein family HMM PF05433	gene	gene130	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0131
AHA_0132	AHA_0132		AHA_0132	148461	148808	-	endoribonuclease L-PSP	identified by match to protein family HMM PF01042	gene	gene131	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0132
AHA_0133	AHA_0133		AHA_0133	148830	149078	-	conserved hypothetical protein	identified by match to protein family HMM PF01206	gene	gene132	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0133
AHA_0134	AHA_0134		AHA_0134	149247	149438	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene133	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0134
AHA_0135	AHA_0135		AHA_0135	149511	150749	-	ABC-type sugar transport system%2C periplasmic component	identified by match to protein family HMM PF01547	gene	gene134	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0135
AHA_0136	AHA_0136		AHA_0136	150754	152169	-	signal transduction histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene135	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0136
AHA_0137	AHA_0137		AHA_0137	152251	152985	-	GltR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene136	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0137
AHA_0138	AHA_0138	fadA	fadA	153298	154461	-	acetyl-CoA C-acyltransferase FadA	identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930%3B match to protein family HMM TIGR02445	gene	gene137	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0138
AHA_0139	AHA_0139	fadB	fadB	154483	156630	-	fatty oxidation complex%2C alpha subunit FadB	identified by match to protein family HMM PF00378%3B match to protein family HMM PF00725%3B match to protein family HMM PF02737%3B match to protein family HMM TIGR02437	gene	gene138	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0139
AHA_0140	AHA_0140		AHA_0140	156833	158770	-	acetoacetyl-CoA synthase	identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01217	gene	gene139	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0140
AHA_0141	AHA_0141	pepQ	pepQ	158961	160283	+	Xaa-Pro dipeptidase	identified by similarity to SP:P21165%3B match to protein family HMM PF00557	gene	gene140	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0141
AHA_0142	AHA_0142		AHA_0142	160283	160900	+	conserved hypothetical protein	identified by similarity to GB:BAB38199.1%3B match to protein family HMM PF01205%3B match to protein family HMM TIGR00257	gene	gene141	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0142
AHA_0143	AHA_0143	trkH	trkH	160937	162394	+	Trk system potassium uptake protein TrkH	identified by similarity to SP:P21166%3B match to protein family HMM PF02386%3B match to protein family HMM TIGR00933	gene	gene142	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0143
AHA_0144	AHA_0144		AHA_0144	162333	162926	+	protoporphyrinogen oxidase		gene	gene143	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0144
AHA_0145	AHA_0145	rrsB	rrsB	163378	164914	+	16S ribosomal RNA		rRNA	gene144	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0145
AHA_0146	AHA_0146		AHA_0146	165116	165191	+	tRNA-Glu		tRNA	gene145	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0146
AHA_0147	AHA_0147	rrlB	rrlB	165420	168315	+	23S ribosomal RNA		rRNA	gene146	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0147
AHA_0148	AHA_0148	rrfB	rrfB	168431	168548	+	5S ribosomal RNA		rRNA	gene147	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0148
AHA_0149	AHA_0149		AHA_0149	168638	171214	-	acyl-CoA synthetase	identified by match to protein family HMM PF00583%3B match to protein family HMM PF02629	gene	gene148	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0149
AHA_0150	AHA_0150		AHA_0150	171287	171478	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene149	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0150
AHA_0151	AHA_0151	ilvY	ilvY	172509	173402	-	transcriptional regulator IlvY	identified by similarity to SP:P05827%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene151	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0151
AHA_0152	AHA_0152		AHA_0152	171648	172520	+	conserved hypothetical protein		gene	gene150	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0152
AHA_0153	AHA_0153	ilvC	ilvC	173624	175105	+	ketol-acid reductoisomerase	identified by match to protein family HMM PF01450%3B match to protein family HMM PF07991%3B match to protein family HMM TIGR00465	gene	gene152	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0153
AHA_0154	AHA_0154	pgi	pgi	175254	176903	-	glucose-6-phosphate isomerase	identified by match to protein family HMM PF00342	gene	gene153	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0154
AHA_0155	AHA_0155		AHA_0155	177320	177508	+	phage lysis protein Y%2C holin%2C putative		gene	gene154	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0155
AHA_0156	AHA_0156		AHA_0156	177635	178471	-	small-conductance mechanosensitive channel	identified by match to protein family HMM PF00924%3B match to protein family HMM PF05552	gene	gene155	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0156
AHA_0157	AHA_0157		AHA_0157	178658	179254	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene156	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0157
AHA_0158	AHA_0158		AHA_0158	179324	179782	-	deoxyuridine 5'-triphosphate nucleotidohydrolase	identified by match to protein family HMM PF00692%3B match to protein family HMM TIGR00576	gene	gene157	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0158
AHA_0159	AHA_0159	coaBC	coaBC	179823	181025	-	phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase	identified by similarity to SP:P24285%3B match to protein family HMM PF02441%3B match to protein family HMM PF04127%3B match to protein family HMM TIGR00521	gene	gene158	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0159
AHA_0160	AHA_0160	radC	radC	181173	181847	+	DNA repair protein RadC	identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608	gene	gene159	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0160
AHA_0161	AHA_0161	rpmB	rpmB	181984	182220	+	ribosomal protein L28	identified by match to protein family HMM PF00830%3B match to protein family HMM TIGR00009	gene	gene160	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0161
AHA_0162	AHA_0162	rpmG	rpmG	182232	182399	+	ribosomal protein L33	identified by match to protein family HMM PF00471%3B match to protein family HMM TIGR01023	gene	gene161	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0162
AHA_0163	AHA_0163		AHA_0163	182493	182948	+	conserved hypothetical protein		gene	gene162	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0163
AHA_0164	AHA_0164	mutM	mutM	182978	183790	+	formamidopyrimidine-DNA glycosylase	identified by match to protein family HMM PF01149%3B match to protein family HMM PF06831%3B match to protein family HMM TIGR00577	gene	gene163	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0164
AHA_0165	AHA_0165		AHA_0165	183969	184850	+	conserved hypothetical protein	identified by match to protein family HMM PF04393	gene	gene164	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0165
AHA_0166	AHA_0166	coaD	coaD	184904	185386	-	pantetheine-phosphate adenylyltransferase	identified by similarity to PDB:1B6T_B%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR01510	gene	gene165	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0166
AHA_0167	AHA_0167		AHA_0167	185610	186653	+	heptosyltransferase	identified by match to protein family HMM PF01075	gene	gene166	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0167
AHA_0168	AHA_0168		AHA_0168	186723	187511	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene167	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0168
AHA_0169	AHA_0169	rfaF	rfaF	187753	188868	+	lipopolysaccharide heptosyltransferase II	identified by match to protein family HMM PF01075%3B match to protein family HMM TIGR02195	gene	gene168	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0169
AHA_0170	AHA_0170	waaA	waaA	188870	190135	+	3-deoxy-D-manno-octulosonic-acid transferase	identified by match to protein family HMM PF00534%3B match to protein family HMM PF04413	gene	gene169	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0170
AHA_0171	AHA_0171		AHA_0171	190206	191462	-	integral membrane protein	identified by match to protein family HMM PF04215	gene	gene170	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0171
AHA_0172	AHA_0172		AHA_0172	191523	191846	-	PTS sysytem%2C mannitol-specific enzyme II%2C B component	identified by match to protein family HMM PF02302	gene	gene171	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0172
AHA_0173	AHA_0173		AHA_0173	191843	192286	-	ascorbate-specific phosphotransferase enzyme IIA component	identified by match to protein family HMM PF00359	gene	gene172	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0173
AHA_0174	AHA_0174		AHA_0174	192539	193561	+	HTH-type transcriptional regulator GntR	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene173	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0174
AHA_0175	AHA_0175		AHA_0175	193591	194571	+	putative quinone oxidoreductase%2C YhdH/YhfP family	identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02823	gene	gene174	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0175
AHA_0176	AHA_0176		AHA_0176	194616	194765	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene175	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0176
AHA_0177	AHA_0177		AHA_0177	194898	195239	+	conserved hypothetical protein		gene	gene176	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0177
AHA_0178	AHA_0178		AHA_0178	195253	195471	-	conserved hypothetical protein		gene	gene177	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0178
AHA_0179	AHA_0179	fliL-1	fliL-1	195529	195963	-	flagellar basal body-associated protein FliL	identified by match to protein family HMM PF03748	gene	gene178	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0179
AHA_0180	AHA_0180		AHA_0180	196109	196645	+	chorismate--pyruvate lyase	identified by match to protein family HMM PF04345	gene	gene179	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0180
AHA_0181	AHA_0181	ubiA	ubiA	196642	197505	+	4-hydroxybenzoate polyprenyl transferase	identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01474	gene	gene180	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0181
AHA_0182	AHA_0182	plsB	plsB	197570	199993	-	glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553	gene	gene181	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0182
AHA_0183	AHA_0183	lexA	lexA	200198	200821	+	LexA repressor	identified by similarity to SP:P0A7C2%3B match to protein family HMM PF00717%3B match to protein family HMM PF01726%3B match to protein family HMM TIGR00498	gene	gene182	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0183
AHA_0184	AHA_0184		AHA_0184	201261	201548	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene183	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0184
AHA_0185	AHA_0185		AHA_0185	201552	201671	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene184	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0185
AHA_0186	AHA_0186		AHA_0186	201710	202396	+	SCO1/SenC family protein	identified by match to protein family HMM PF02630	gene	gene185	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0186
AHA_0187	AHA_0187		AHA_0187	202386	203804	+	DNA-damage-inducible protein F	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene186	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0187
AHA_0188	AHA_0188		AHA_0188	203833	204339	-	RNA methyltransferase%2C TrmH family%2C group 2	identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00185	gene	gene187	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0188
AHA_0189	AHA_0189	cpxA	cpxA	204372	205727	-	sensor histidine kinase CpxA	identified by similarity to SP:P08336%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene188	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0189
AHA_0190	AHA_0190	cpxR	cpxR	205724	206419	-	transcriptional regulatory protein CpxR	identified by similarity to SP:P16244%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene189	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0190
AHA_0191	AHA_0191	fieF	fieF	206506	207417	+	cation-efflux pump FieF	identified by similarity to SP:P69380%3B match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene190	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0191
AHA_0192	AHA_0192	cysE	cysE	207426	208205	+	serine O-acetyltransferase	identified by match to protein family HMM PF06426%3B match to protein family HMM TIGR01172	gene	gene191	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0192
AHA_0193	AHA_0193		AHA_0193	208227	209507	+	conserved hypothetical protein		gene	gene192	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0193
AHA_0194	AHA_0194		AHA_0194	209553	209951	+	transcriptional regulator	identified by match to protein family HMM PF06005	gene	gene193	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0194
AHA_0195	AHA_0195		AHA_0195	210025	210675	-	sigma cross-reacting protein 27A	identified by match to protein family HMM PF01965	gene	gene194	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0195
AHA_0196	AHA_0196	polA	polA	211076	213829	+	DNA polymerase I	identified by match to protein family HMM PF00476%3B match to protein family HMM PF01367%3B match to protein family HMM PF01612%3B match to protein family HMM PF02739%3B match to protein family HMM TIGR00593	gene	gene195	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0196
AHA_0197	AHA_0197		AHA_0197	213909	214448	-	carbonic anhydrase%2C family 3	identified by match to protein family HMM PF00132	gene	gene196	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0197
AHA_0198	AHA_0198	rrsC	rrsC	214913	216449	+	16S ribosomal RNA		rRNA	gene197	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0198
AHA_0199	AHA_0199		AHA_0199	216523	216599	+	tRNA-Ile		tRNA	gene198	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0199
AHA_0200	AHA_0200		AHA_0200	216610	216685	+	tRNA-Ala		tRNA	gene199	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0200
AHA_0201	AHA_0201	rrlC	rrlC	216918	219813	+	23S ribosomal RNA		rRNA	gene200	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0201
AHA_0202	AHA_0202		AHA_0202	220152	220227	+	tRNA-Thr		tRNA	gene201	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0202
AHA_0203	AHA_0203	rrfC	rrfC	220249	220366	+	5S ribosomal RNA		rRNA	gene202	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0203
AHA_0204	AHA_0204		AHA_0204	220520	221485	+	HTH-type transcriptional regulator EbgR	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene203	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0204
AHA_0205	AHA_0205		AHA_0205	221807	224881	+	evolved beta-galactosidase alpha-subunit	identified by match to protein family HMM PF00703%3B match to protein family HMM PF02836%3B match to protein family HMM PF02837%3B match to protein family HMM PF02929	gene	gene204	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0205
AHA_0206	AHA_0206		AHA_0206	224494	225333	+	evolved beta-D-galactosidase%2C beta subunit%3B cryptic gene	identified by match to protein family HMM PF04074	gene	gene205	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0206
AHA_0207	AHA_0207		AHA_0207	225436	226881	+	inner membrane transporter YgjI	identified by match to protein family HMM PF00324	gene	gene206	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0207
AHA_0208	AHA_0208		AHA_0208	226910	227296	+	methionyl-tRNA synthetase	identified by match to protein family HMM PF01588	gene	gene207	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0208
AHA_0209	AHA_0209		AHA_0209	227463	228899	+	amino acid permease	identified by match to protein family HMM PF00324	gene	gene208	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0209
AHA_0210	AHA_0210		AHA_0210	229111	230082	+	sodium/bile acid symporter family protein		gene	gene209	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0210
AHA_0211	AHA_0211		AHA_0211	230140	232290	-	generic methyltransferase	identified by match to protein family HMM PF03781	gene	gene210	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0211
AHA_0212	AHA_0212		AHA_0212	232655	233377	+	conserved hypothetical protein		gene	gene211	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0212
AHA_0213	AHA_0213		AHA_0213	233431	234267	-	esterase YeiG	identified by match to protein family HMM PF00756%3B match to protein family HMM TIGR02821	gene	gene212	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0213
AHA_0214	AHA_0214		AHA_0214	234317	235444	-	alcohol dehydrogenase class III	identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02818	gene	gene213	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0214
AHA_0215	AHA_0215		AHA_0215	235564	236469	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene214	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0215
AHA_0216	AHA_0216		AHA_0216	236526	237491	-	putative transport system permease abc transporter protein	identified by match to protein family HMM PF02653	gene	gene215	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0216
AHA_0217	AHA_0217		AHA_0217	237494	238609	-	putative transport system permease abc transporter protein	identified by match to protein family HMM PF02653	gene	gene216	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0217
AHA_0218	AHA_0218		AHA_0218	238692	240272	-	ABC transporter%2C nucleotide binding/ATPase protein (sugar/ribonucleotide)	identified by match to protein family HMM PF00005	gene	gene217	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0218
AHA_0219	AHA_0219		AHA_0219	240356	241459	-	membrane lipoprotein	identified by match to protein family HMM PF02608	gene	gene218	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0219
AHA_0220	AHA_0220	uvrD	uvrD	241787	243958	+	DNA helicase II	identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01075	gene	gene219	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0220
AHA_0221	AHA_0221		AHA_0221	244058	245614	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene220	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0221
AHA_0222	AHA_0222		AHA_0222	245611	246813	-	conserved domain protein		gene	gene221	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0222
AHA_0223	AHA_0223		AHA_0223	246810	247247	-	putative lipoprotein		gene	gene222	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0223
AHA_0224	AHA_0224		AHA_0224	247422	247934	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene223	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0224
AHA_0225	AHA_0225		AHA_0225	248027	249187	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene224	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0225
AHA_0226	AHA_0226		AHA_0226	249679	249876	-	conserved hypothetical protein		gene	gene225	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0226
AHA_0227	AHA_0227		AHA_0227	250157	250657	+	conserved hypothetical protein		gene	gene226	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0227
AHA_0228	AHA_0228		AHA_0228	250746	251195	-	conserved hypothetical protein		gene	gene227	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0228
AHA_0229	AHA_0229		AHA_0229	251276	251788	-	hemolysin	identified by match to protein family HMM PF07883	gene	gene228	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0229
AHA_0230	AHA_0230		AHA_0230	251886	252542	-	conserved hypothetical protein		gene	gene229	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0230
AHA_0231	AHA_0231		AHA_0231	252751	253488	+	conserved hypothetical protein	identified by match to protein family HMM PF06206	gene	gene230	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0231
AHA_0232	AHA_0232		AHA_0232	253498	254166	-	LysR family transcriptional regulator	identified by match to protein family HMM PF03466	gene	gene231	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0232
AHA_0233	AHA_0233		AHA_0233	254191	254382	-	transcriptional regulatory protein	identified by match to protein family HMM PF00126	gene	gene232	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0233
AHA_0234	AHA_0234		AHA_0234	254484	255104	+	lysine exporter protein%2C putative	identified by match to protein family HMM PF01810	gene	gene233	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0234
AHA_0235	AHA_0235		AHA_0235	255180	256424	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene234	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0235
AHA_0236	AHA_0236		AHA_0236	256511	257545	-	YeeE/YedE family protein	identified by match to protein family HMM PF04143	gene	gene235	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0236
AHA_0237	AHA_0237		AHA_0237	257746	259491	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene236	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0237
AHA_0238	AHA_0238	mgtA	mgtA	260599	263367	+	magnesium-translocating P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00690%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01524	gene	gene237	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0238
AHA_0239	AHA_0239		AHA_0239	263467	264210	-	transporter%2C LysE family	identified by match to protein family HMM PF01810	gene	gene238	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0239
AHA_0240	AHA_0240		AHA_0240	264194	265012	-	transcriptional regulator%2C AraC/XylS family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311	gene	gene239	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0240
AHA_0241	AHA_0241	rarD-1	rarD-1	265080	265982	-	RarD protein	identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00688	gene	gene240	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0241
AHA_0242	AHA_0242		AHA_0242	266108	266398	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene241	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0242
AHA_0243	AHA_0243		AHA_0243	266407	267903	-	putative aldehyde dehydrogenase	identified by match to protein family HMM PF00171	gene	gene242	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0243
AHA_0244	AHA_0244		AHA_0244	268165	268707	-	DNA-binding protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene243	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0244
AHA_0245	AHA_0245		AHA_0245	268893	270224	+	omega-amino acid--pyruvate aminotransferase	identified by match to protein family HMM PF00202	gene	gene244	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0245
AHA_0246	AHA_0246	mmsA-1	mmsA-1	270323	271819	+	methylmalonate-semialdehyde dehydrogenase	identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01722	gene	gene245	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0246
AHA_0247	AHA_0247		AHA_0247	271904	272659	+	glutamine amidotransferase%2C class I	identified by match to protein family HMM PF00117	gene	gene246	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0247
AHA_0248	AHA_0248	ald	ald	272656	273771	+	alanine dehydrogenase	identified by match to protein family HMM PF01262%3B match to protein family HMM PF01488%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00518	gene	gene247	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0248
AHA_0249	AHA_0249		AHA_0249	273891	274730	+	carbohydrate kinase%2C PfkB family	identified by match to protein family HMM PF00294	gene	gene248	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0249
AHA_0250	AHA_0250		AHA_0250	275030	275482	+	Rrf2 family protein	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene249	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0250
AHA_0251	AHA_0251		AHA_0251	275541	276053	-	NapF protein	identified by match to protein family HMM PF00037	gene	gene250	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0251
AHA_0252	AHA_0252		AHA_0252	276180	276407	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene251	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0252
AHA_0253	AHA_0253		AHA_0253	276404	277744	+	DNA recombination protein RmuC	identified by match to protein family HMM PF02646	gene	gene252	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0253
AHA_0254	AHA_0254		AHA_0254	277850	279292	-	TrkH	identified by match to protein family HMM PF02386%3B match to protein family HMM TIGR00933	gene	gene253	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0254
AHA_0255	AHA_0255	trkA	trkA	279389	280765	-	Trk system potassium uptake protein TrkA	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254%3B match to protein family HMM PF03807	gene	gene254	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0255
AHA_0256	AHA_0256	sun	sun	280913	282205	-	ribosomal RNA small subunit methyltransferase B	identified by match to protein family HMM PF01029%3B match to protein family HMM PF01189%3B match to protein family HMM TIGR00563	gene	gene255	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0256
AHA_0257	AHA_0257	fmt	fmt	282262	283206	-	methionyl-tRNA formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM PF02911%3B match to protein family HMM TIGR00460	gene	gene256	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0257
AHA_0258	AHA_0258	def-1	def-1	283219	283731	-	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene257	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0258
AHA_0259	AHA_0259		AHA_0259	283840	284928	+	LysM domain protein	identified by match to protein family HMM PF01476	gene	gene258	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0259
AHA_0260	AHA_0260	dprA	dprA	284930	286045	+	DNA protecting protein DprA	identified by match to protein family HMM PF02481%3B match to protein family HMM TIGR00732	gene	gene259	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0260
AHA_0261	AHA_0261		AHA_0261	286038	286511	+	conserved hypothetical protein	identified by match to protein family HMM PF04361	gene	gene260	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0261
AHA_0262	AHA_0262		AHA_0262	286567	287124	+	topoisomerase DNA-binding C4 zinc finger domain protein	identified by match to protein family HMM PF01396	gene	gene261	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0262
AHA_0263	AHA_0263	purE-2	purE-2	287199	287702	+	phosphoribosylaminoimidazole carboxylase%2C catalytic subunit	identified by match to protein family HMM PF00731%3B match to protein family HMM TIGR01162	gene	gene262	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0263
AHA_0264	AHA_0264		AHA_0264	287837	288397	+	Sua5/YciO/YrdC family protein	identified by match to protein family HMM PF01300	gene	gene263	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0264
AHA_0265	AHA_0265	hemF	hemF	288492	289400	+	coproporphyrinogen III oxidase%2C aerobic	identified by match to protein family HMM PF01218	gene	gene264	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0265
AHA_0266	AHA_0266	aroE	aroE	289504	290325	+	shikimate 5-dehydrogenase	identified by match to protein family HMM PF01488%3B match to protein family HMM TIGR00507	gene	gene265	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0266
AHA_0267	AHA_0267		AHA_0267	290322	290582	+	conserved hypothetical protein	identified by match to protein family HMM PF07369	gene	gene266	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0267
AHA_0268	AHA_0268		AHA_0268	291373	292023	-	GTP-binding protein YihA	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00650	gene	gene267	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0268
AHA_0269	AHA_0269		AHA_0269	292127	292783	+	cytochrome c4	identified by match to protein family HMM PF00034	gene	gene268	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0269
AHA_0270	AHA_0270		AHA_0270	293413	294189	+	protein of unknown function	identified by match to protein family HMM PF04220	gene	gene269	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0270
AHA_0271	AHA_0271		AHA_0271	294201	294641	+	conserved hypothetical protein		gene	gene270	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0271
AHA_0272	AHA_0272	hemN	hemN	294669	296042	+	oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00538	gene	gene271	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0272
AHA_0273	AHA_0273	add-1	add-1	296111	297112	-	adenosine deaminase	identified by match to protein family HMM PF00962%3B match to protein family HMM TIGR01430	gene	gene272	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0273
AHA_0274	AHA_0274	ntrC	ntrC	297254	298672	-	nitrogen regulation protein NR(I)	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM TIGR01818	gene	gene273	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0274
AHA_0275	AHA_0275	glnL	glnL	298682	299737	-	nitrogen regulation protein NR(II)	identified by similarity to SP:P06712%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene274	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0275
AHA_0276	AHA_0276		AHA_0276	299818	300399	-	conserved hypothetical protein	identified by similarity to GB:AAN57435.1	gene	gene275	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0276
AHA_0277	AHA_0277	glnA	glnA	300492	301901	-	glutamine synthetase%2C type I	identified by match to protein family HMM PF00120%3B match to protein family HMM PF03951%3B match to protein family HMM TIGR00653	gene	gene276	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0277
AHA_0278	AHA_0278	typA	typA	302253	304064	+	GTP-binding protein TypA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01394	gene	gene277	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0278
AHA_0279	AHA_0279		AHA_0279	304238	305110	+	YihY family protein	identified by match to protein family HMM PF03631%3B match to protein family HMM TIGR00765	gene	gene278	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0279
AHA_0280	AHA_0280		AHA_0280	305617	306393	-	conserved hypothetical protein		gene	gene280	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0280
AHA_0281	AHA_0281	dtd	dtd	305191	305628	+	D-tyrosyl-tRNA(Tyr) deacylase	identified by match to protein family HMM PF02580%3B match to protein family HMM TIGR00256	gene	gene279	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0281
AHA_0282	AHA_0282		AHA_0282	306468	307376	+	acetyltransferase	identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR02447	gene	gene281	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0282
AHA_0283	AHA_0283		AHA_0283	307439	309505	-	AsmA family	identified by match to protein family HMM PF05170	gene	gene282	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0283
AHA_0284	AHA_0284	recG	recG	309648	311720	-	ATP-dependent DNA helicase RecG	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00643	gene	gene283	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0284
AHA_0285	AHA_0285	pssA	pssA	311897	313264	-	CDP-diacylglycerol--serine O-phosphatidyltransferase	identified by match to protein family HMM PF00614	gene	gene284	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0285
AHA_0286	AHA_0286		AHA_0286	313393	314733	-	Low-affinity gluconate transporter	identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791	gene	gene285	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0286
AHA_0287	AHA_0287	aroK-1	aroK-1	314979	315488	+	shikimate kinase	identified by match to protein family HMM PF01202%3B match to protein family HMM TIGR01313	gene	gene286	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0287
AHA_0288	AHA_0288	edd	edd	315485	317281	+	phosphogluconate dehydratase	identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR01196	gene	gene287	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0288
AHA_0289	AHA_0289	eda	eda	317302	317943	+	2-dehydro-3-deoxyphosphogluconate aldolase/4-hydroxy-2-oxoglutarate aldolase	identified by match to protein family HMM PF01081%3B match to protein family HMM TIGR01182	gene	gene288	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0289
AHA_0290	AHA_0290		AHA_0290	318041	319048	-	HTH-type transcriptional regulator GntR	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene289	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0290
AHA_0291	AHA_0291		AHA_0291	319139	319789	+	Qnr	identified by match to protein family HMM PF00805	gene	gene290	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0291
AHA_0292	AHA_0292	yibP	yibP	319911	321221	-	nonpeptidase homolog%2C peptidase M23B family	identified by match to protein family HMM PF01551	gene	gene291	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0292
AHA_0293	AHA_0293	gpmI	gpmI	321231	322955	-	2%2C3-bisphosphoglycerate-independent phosphoglycerate mutase	identified by match to protein family HMM PF01676%3B match to protein family HMM PF06415%3B match to protein family HMM TIGR01307	gene	gene292	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0293
AHA_0294	AHA_0294		AHA_0294	323086	323517	+	rhodanese domain protein	identified by match to protein family HMM PF00581	gene	gene293	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0294
AHA_0295	AHA_0295	secB	secB	323565	324035	+	protein-export chaperone SecB	identified by similarity to SP:P15040%3B match to protein family HMM PF02556%3B match to protein family HMM TIGR00809	gene	gene294	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0295
AHA_0296	AHA_0296		AHA_0296	324038	325042	+	glycerol-3-phosphate dehydrogenase [NAD(P)+] (NAD(P)H-dependent glycerol-3-phosphate dehydrogenase)	identified by match to protein family HMM PF01210%3B match to protein family HMM PF02558%3B match to protein family HMM PF07479	gene	gene295	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0296
AHA_0297	AHA_0297	gntY	gntY	325126	325704	-	protein GntY	identified by similarity to SP:P63020%3B match to protein family HMM PF01106%3B match to protein family HMM PF01521	gene	gene296	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0297
AHA_0298	AHA_0298		AHA_0298	325785	326513	-	comF family protein		gene	gene297	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0298
AHA_0299	AHA_0299	bioH	bioH	326550	327314	+	putative pimeloyl-BioC--CoA transferase BioH	identified by match to protein family HMM PF00561%3B match to protein family HMM TIGR01738	gene	gene298	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0299
AHA_0300	AHA_0300		AHA_0300	327386	327619	+	flagellar hook protein FlgE	identified by match to protein family HMM PF06429	gene	gene299	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0300
AHA_0301	AHA_0301		AHA_0301	327621	328418	+	conserved hypothetical protein		gene	gene300	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0301
AHA_0302	AHA_0302		AHA_0302	328514	328792	+	conserved hypothetical protein		gene	gene301	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0302
AHA_0303	AHA_0303		AHA_0303	328848	331352	-	S1 RNA binding domain protein	identified by match to protein family HMM PF00575	gene	gene302	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0303
AHA_0304	AHA_0304	greB	greB	331424	331897	-	transcription elongation factor GreB	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01461	gene	gene303	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0304
AHA_0305	AHA_0305		AHA_0305	332134	332853	+	transcriptional regulator OmpR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene304	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0305
AHA_0306	AHA_0306	envZ	envZ	332859	334160	+	osmolarity sensor protein EnvZ	identified by similarity to SP:P02933%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene305	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0306
AHA_0307	AHA_0307		AHA_0307	334196	335110	-	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene306	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0307
AHA_0308	AHA_0308	rpsJ	rpsJ	335374	335778	+	ribosomal protein S10	identified by match to protein family HMM PF00338%3B match to protein family HMM TIGR01049	gene	gene307	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0308
AHA_0309	AHA_0309	rplC	rplC	335801	336433	+	ribosomal protein L3	identified by match to protein family HMM PF00297	gene	gene308	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0309
AHA_0310	AHA_0310	rplD	rplD	336451	337056	+	ribosomal protein L4/L1 family	identified by match to protein family HMM PF00573	gene	gene309	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0310
AHA_0311	AHA_0311	rplW	rplW	337053	337355	+	ribosomal protein L23	identified by match to protein family HMM PF00276	gene	gene310	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0311
AHA_0312	AHA_0312	rplB	rplB	337371	338192	+	ribosomal protein L2	identified by match to protein family HMM PF00181%3B match to protein family HMM PF03947%3B match to protein family HMM TIGR01171	gene	gene311	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0312
AHA_0313	AHA_0313	rpsS	rpsS	338215	338493	+	ribosomal protein S19	identified by match to protein family HMM PF00203%3B match to protein family HMM TIGR01050	gene	gene312	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0313
AHA_0314	AHA_0314	rplV	rplV	338504	338848	+	ribosomal protein L22	identified by match to protein family HMM PF00237%3B match to protein family HMM TIGR01044	gene	gene313	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0314
AHA_0315	AHA_0315	rpsC	rpsC	338852	339565	+	ribosomal protein S3	identified by match to protein family HMM PF00189%3B match to protein family HMM PF00417%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR01009	gene	gene314	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0315
AHA_0316	AHA_0316	rplP	rplP	339579	339992	+	ribosomal protein L16	identified by match to protein family HMM PF00252%3B match to protein family HMM TIGR01164	gene	gene315	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0316
AHA_0317	AHA_0317	rpmC	rpmC	339989	340183	+	ribosomal protein L29	identified by match to protein family HMM PF00831%3B match to protein family HMM TIGR00012	gene	gene316	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0317
AHA_0318	AHA_0318	rpsQ	rpsQ	340183	340431	+	ribosomal protein S17	identified by match to protein family HMM PF00366	gene	gene317	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0318
AHA_0319	AHA_0319	rplN	rplN	340579	340947	+	ribosomal protein L14	identified by match to protein family HMM PF00238%3B match to protein family HMM TIGR01067	gene	gene318	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0319
AHA_0320	AHA_0320	rplX	rplX	340959	341276	+	ribosomal protein L24	identified by match to protein family HMM PF00467%3B match to protein family HMM TIGR01079	gene	gene319	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0320
AHA_0321	AHA_0321		AHA_0321	341290	341829	+	50S ribosomal protein L5	identified by match to protein family HMM PF00281%3B match to protein family HMM PF00673	gene	gene320	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0321
AHA_0322	AHA_0322		AHA_0322	341840	342145	+	30S ribosomal protein S14	identified by match to protein family HMM PF00253	gene	gene321	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0322
AHA_0323	AHA_0323	rpsH	rpsH	342167	342559	+	ribosomal protein S8	identified by match to protein family HMM PF00410	gene	gene322	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0323
AHA_0324	AHA_0324		AHA_0324	342573	343106	+	50S ribosomal protein L6	identified by match to protein family HMM PF00347	gene	gene323	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0324
AHA_0325	AHA_0325	rplR	rplR	343116	343469	+	ribosomal protein L18	identified by match to protein family HMM PF00861%3B match to protein family HMM TIGR00060	gene	gene324	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0325
AHA_0326	AHA_0326	rpsE	rpsE	343484	343984	+	ribosomal protein S5	identified by match to protein family HMM PF00333%3B match to protein family HMM PF03719%3B match to protein family HMM TIGR01021	gene	gene325	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0326
AHA_0327	AHA_0327	rpmD	rpmD	343991	344170	+	ribosomal protein L30	identified by match to protein family HMM PF00327%3B match to protein family HMM TIGR01308	gene	gene326	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0327
AHA_0328	AHA_0328	rplO	rplO	344173	344610	+	ribosomal protein L15	identified by match to protein family HMM PF00256%3B match to protein family HMM PF01305%3B match to protein family HMM TIGR01071	gene	gene327	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0328
AHA_0329	AHA_0329	secY	secY	344619	345947	+	preprotein translocase%2C SecY subunit	identified by similarity to SP:P03844%3B match to protein family HMM PF00344%3B match to protein family HMM TIGR00967	gene	gene328	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0329
AHA_0330	AHA_0330	rpsM	rpsM	346228	346584	+	ribosomal protein S13p/S18e	identified by match to protein family HMM PF00416	gene	gene329	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0330
AHA_0331	AHA_0331	rpsK	rpsK	346599	346988	+	ribosomal protein S11	identified by match to protein family HMM PF00411	gene	gene330	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0331
AHA_0332	AHA_0332	rpsD	rpsD	347028	347648	+	ribosomal protein S4	identified by match to protein family HMM PF00163%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR01017	gene	gene331	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0332
AHA_0333	AHA_0333	rpoA	rpoA	347674	348663	+	DNA-directed RNA polymerase%2C alpha subunit	identified by match to protein family HMM PF01000%3B match to protein family HMM PF01193%3B match to protein family HMM PF03118%3B match to protein family HMM TIGR02027	gene	gene332	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0333
AHA_0334	AHA_0334	rplQ	rplQ	348707	349090	+	ribosomal protein L17	identified by match to protein family HMM PF01196%3B match to protein family HMM TIGR00059	gene	gene333	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0334
AHA_0335	AHA_0335	rrsD	rrsD	349952	351488	+	16S ribosomal RNA		rRNA	gene334	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0335
AHA_0336	AHA_0336		AHA_0336	351690	351765	+	tRNA-Glu		tRNA	gene335	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0336
AHA_0337	AHA_0337	rrlD	rrlD	351994	354889	+	23S ribosomal RNA		rRNA	gene336	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0337
AHA_0338	AHA_0338	rrfD	rrfD	354966	355083	+	5S ribosomal RNA		rRNA	gene337	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0338
AHA_0339	AHA_0339		AHA_0339	355180	355256	+	tRNA-Asp		tRNA	gene338	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0339
AHA_0340	AHA_0340		AHA_0340	356544	357545	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene339	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0340
AHA_0341	AHA_0341		AHA_0341	357834	358220	-	SirB family protein	identified by match to protein family HMM PF04247	gene	gene340	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0341
AHA_0342	AHA_0342	kefB	kefB	358217	360073	-	glutathione-regulated potassium-efflux system protein KefB	identified by similarity to SP:P45522%3B match to protein family HMM PF00999%3B match to protein family HMM PF02254%3B match to protein family HMM TIGR00932	gene	gene341	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0342
AHA_0343	AHA_0343		AHA_0343	360144	360824	-	modulator of glutathione-dependent potassium efflux system	identified by match to protein family HMM PF02525	gene	gene342	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0343
AHA_0344	AHA_0344		AHA_0344	360821	361717	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene343	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0344
AHA_0345	AHA_0345		AHA_0345	361687	362529	+	clavaldehyde dehydrogenase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370	gene	gene344	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0345
AHA_0346	AHA_0346		AHA_0346	362617	362940	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene345	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0346
AHA_0347	AHA_0347		AHA_0347	362990	363421	+	conserved hypothetical protein	identified by match to protein family HMM PF04214	gene	gene346	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0347
AHA_0348	AHA_0348		AHA_0348	363580	365799	+	protease II	identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897	gene	gene347	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0348
AHA_0349	AHA_0349		AHA_0349	366071	367186	+	trap transporter solute receptor%2C taxi family	identified by match to protein family HMM TIGR02122	gene	gene348	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0349
AHA_0350	AHA_0350		AHA_0350	367289	369841	+	TRAP transporter%2C 4TM/12TM fusion protein	identified by match to protein family HMM PF06808%3B match to protein family HMM TIGR02123	gene	gene349	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0350
AHA_0351	AHA_0351		AHA_0351	369900	370010	-	conserved hypothetical protein		gene	gene350	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0351
AHA_0352	AHA_0352		AHA_0352	370032	370184	-	conserved hypothetical protein		gene	gene351	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0352
AHA_0353	AHA_0353		AHA_0353	370361	370987	+	membrane protein%2C putative	identified by match to protein family HMM PF07947	gene	gene352	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0353
AHA_0354	AHA_0354		AHA_0354	371078	372631	-	multidrug resistance protein B	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00711	gene	gene353	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0354
AHA_0355	AHA_0355		AHA_0355	372631	373683	-	HlyD family secretion protein	identified by match to protein family HMM PF00529	gene	gene354	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0355
AHA_0356	AHA_0356		AHA_0356	373780	374682	+	transcriptional regulators%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene355	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0356
AHA_0357	AHA_0357		AHA_0357	374739	375053	+	conserved hypothetical protein		gene	gene356	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0357
AHA_0358	AHA_0358		AHA_0358	375068	376387	-	proton/glutamate symporter	identified by match to protein family HMM PF00375	gene	gene357	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0358
AHA_0359	AHA_0359		AHA_0359	376422	376805	+	conserved domain protein		gene	gene358	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0359
AHA_0360	AHA_0360		AHA_0360	376908	377507	+	membrane protein%2C putative	identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427	gene	gene359	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0360
AHA_0361	AHA_0361		AHA_0361	377612	378580	-	HTH-type transcriptional regulator YidZ	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene360	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0361
AHA_0362	AHA_0362		AHA_0362	378854	379015	+	conserved domain protein	identified by match to protein family HMM PF02416%3B match to protein family HMM TIGR01411	gene	gene361	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0362
AHA_0363	AHA_0363		AHA_0363	379030	379332	+	conserved hypothetical protein	identified by match to protein family HMM PF04175	gene	gene362	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0363
AHA_0364	AHA_0364		AHA_0364	379381	380982	+	amino-acid abc transporter binding protein	identified by match to protein family HMM PF01464	gene	gene363	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0364
AHA_0365	AHA_0365		AHA_0365	381214	382467	+	phospholipase D family protein	identified by match to protein family HMM PF00614	gene	gene364	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0365
AHA_0366	AHA_0366		AHA_0366	382947	384065	-	fatty acid desaturase%2C family 1	identified by match to protein family HMM PF00487	gene	gene365	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0366
AHA_0367	AHA_0367		AHA_0367	384214	384834	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene366	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0367
AHA_0368	AHA_0368		AHA_0368	384843	385220	+	ATPase of the AAA+ class		gene	gene367	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0368
AHA_0369	AHA_0369		AHA_0369	385259	385570	-	conserved hypothetical protein		gene	gene368	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0369
AHA_0370	AHA_0370		AHA_0370	385681	386310	-	methyltransferase%2C putative	identified by match to protein family HMM PF03602%3B match to protein family HMM TIGR00095	gene	gene369	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0370
AHA_0371	AHA_0371		AHA_0371	386421	388322	+	cell division protein FtsY	identified by match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM TIGR00064	gene	gene370	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0371
AHA_0372	AHA_0372	ftsE	ftsE	388413	389081	+	cell division ATP-binding protein FtsE	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02673	gene	gene371	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0372
AHA_0373	AHA_0373		AHA_0373	389081	390034	+	cell division membrane protein	identified by match to protein family HMM PF02687	gene	gene372	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0373
AHA_0374	AHA_0374	rpoH	rpoH	390490	391344	+	alternative sigma factor RpoH	identified by similarity to SP:P11539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02392%3B match to protein family HMM TIGR02937	gene	gene373	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0374
AHA_0375	AHA_0375		AHA_0375	391471	392130	+	carbonic anhydrase	identified by match to protein family HMM PF00484	gene	gene374	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0375
AHA_0376	AHA_0376	hutC	hutC	392142	392846	+	histidine utilization repressor	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702%3B match to protein family HMM TIGR02018	gene	gene375	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0376
AHA_0377	AHA_0377	hutI	hutI	392933	394237	+	imidazolonepropionase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01224	gene	gene376	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0377
AHA_0378	AHA_0378	hutG	hutG	394230	395174	+	formimidoylglutamase	identified by match to protein family HMM PF00491%3B match to protein family HMM TIGR01227	gene	gene377	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0378
AHA_0379	AHA_0379	hutU	hutU	395229	396938	+	urocanate hydratase	identified by match to protein family HMM PF01175%3B match to protein family HMM TIGR01228	gene	gene378	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0379
AHA_0380	AHA_0380	hutH	hutH	396943	398475	+	histidine ammonia-lyase	identified by match to protein family HMM PF00221%3B match to protein family HMM TIGR01225	gene	gene379	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0380
AHA_0381	AHA_0381		AHA_0381	398545	399642	-	calcium/proton antiporter	identified by match to protein family HMM PF01699	gene	gene380	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0381
AHA_0382	AHA_0382		AHA_0382	399804	401171	-	EAL domain protein	identified by match to protein family HMM PF00563	gene	gene381	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0382
AHA_0383	AHA_0383		AHA_0383	401850	403808	+	msha biogenesis protein mshh	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene382	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0383
AHA_0384	AHA_0384		AHA_0384	403909	404856	-	ACC deaminase/D-cysteine desulfhydrase family protein	identified by match to protein family HMM PF00291	gene	gene383	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0384
AHA_0385	AHA_0385		AHA_0385	404926	405789	+	hypothetical msha biogenesis protein mshi		gene	gene384	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0385
AHA_0386	AHA_0386		AHA_0386	405786	405890	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene385	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0386
AHA_0387	AHA_0387		AHA_0387	405890	406483	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene386	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0387
AHA_0388	AHA_0388		AHA_0388	406483	407130	+	msha biogenesis protein mshj		gene	gene387	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0388
AHA_0389	AHA_0389		AHA_0389	407520	409193	+	msha biogenesis protein mshl	identified by match to protein family HMM PF00263%3B match to protein family HMM PF07655%3B match to protein family HMM TIGR02519	gene	gene388	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0389
AHA_0390	AHA_0390		AHA_0390	409271	410161	+	general secretion pathway protein A		gene	gene389	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0390
AHA_0391	AHA_0391		AHA_0391	410257	411255	+	tetratricopeptide repeat family protein%2C putative		gene	gene390	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0391
AHA_0392	AHA_0392		AHA_0392	411288	412997	+	type IV pilin	identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157	gene	gene391	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0392
AHA_0393	AHA_0393		AHA_0393	413051	414271	+	GspF family protein	identified by match to protein family HMM PF00482	gene	gene392	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0393
AHA_0394	AHA_0394		AHA_0394	414449	414913	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene393	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0394
AHA_0395	AHA_0395		AHA_0395	414987	415658	+	msha pilin protein mshb	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene394	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0395
AHA_0396	AHA_0396		AHA_0396	416158	416649	+	msha pilin protein mshc	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene395	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0396
AHA_0397	AHA_0397	mshD	mshD	416636	417199	+	msha pilin protein mshd	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene396	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0397
AHA_0398	AHA_0398		AHA_0398	417199	418020	+	putative msha biogenesis protein msho	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene397	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0398
AHA_0399	AHA_0399		AHA_0399	418483	422166	+	MshQ		gene	gene398	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0399
AHA_0400	AHA_0400	mreB	mreB	422371	423411	+	rod shape-determining protein MreB	identified by match to protein family HMM PF06723%3B match to protein family HMM TIGR00904	gene	gene399	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0400
AHA_0401	AHA_0401	mreC	mreC	423454	424359	+	rod shape-determining protein MreC	identified by match to protein family HMM PF04085%3B match to protein family HMM TIGR00219	gene	gene400	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0401
AHA_0402	AHA_0402	mreD	mreD	424359	424844	+	rod shape-determining protein MreD	identified by match to protein family HMM PF04093	gene	gene401	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0402
AHA_0403	AHA_0403	maf-1	maf-1	424896	425483	+	septum formation protein Maf	identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172	gene	gene402	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0403
AHA_0404	AHA_0404		AHA_0404	425670	427139	+	ribonuclease G	identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757	gene	gene403	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0404
AHA_0405	AHA_0405		AHA_0405	427170	431039	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02099	gene	gene404	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0405
AHA_0406	AHA_0406		AHA_0406	431074	431394	+	stress responsive A/B Barrel Domain superfamily	identified by match to protein family HMM PF07876	gene	gene405	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0406
AHA_0407	AHA_0407		AHA_0407	431423	432229	+	hydrolase%2C carbon-nitrogen family	identified by match to protein family HMM PF00795	gene	gene406	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0407
AHA_0408	AHA_0408	tldD	tldD	432389	433828	+	protein TldD	identified by similarity to SP:P46473%3B match to protein family HMM PF01523	gene	gene407	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0408
AHA_0409	AHA_0409		AHA_0409	433861	434721	+	transcriptional regulator%2C RpiR family	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene408	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0409
AHA_0410	AHA_0410		AHA_0410	434809	435414	-	conserved hypothetical protein		gene	gene409	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0410
AHA_0411	AHA_0411		AHA_0411	435464	436537	-	outer membrane protein		gene	gene410	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0411
AHA_0412	AHA_0412		AHA_0412	436639	438093	-	PTS system%2C IIBC components	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378	gene	gene411	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0412
AHA_0413	AHA_0413		AHA_0413	438193	439089	-	putative glucokinase regulator homolog	identified by match to protein family HMM PF01380%3B match to protein family HMM TIGR00274	gene	gene412	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0413
AHA_0414	AHA_0414		AHA_0414	439353	439607	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene413	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0414
AHA_0415	AHA_0415		AHA_0415	439717	440436	-	conserved hypothetical protein	identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427	gene	gene414	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0415
AHA_0416	AHA_0416		AHA_0416	440568	441884	-	transporter%2C major facilitator family	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene415	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0416
AHA_0417	AHA_0417		AHA_0417	442800	444002	-	regulatory components of sensory transduction system	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966	gene	gene417	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0417
AHA_0418	AHA_0418		AHA_0418	442132	442803	+	domain of unknown function DUF71	identified by match to protein family HMM PF01902	gene	gene416	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0418
AHA_0419	AHA_0419		AHA_0419	443941	446607	-	hybrid sensory kinase	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518	gene	gene418	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0419
AHA_0420	AHA_0420		AHA_0420	446608	447678	-	TorS-related protein	identified by match to protein family HMM PF02518%3B match to protein family HMM PF07228	gene	gene419	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0420
AHA_0421	AHA_0421		AHA_0421	447685	448059	-	sigma-B regulator RsbS		gene	gene420	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0421
AHA_0422	AHA_0422		AHA_0422	448069	449460	-	chemotaxis protein	identified by match to protein family HMM PF00989%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00229	gene	gene421	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0422
AHA_0423	AHA_0423		AHA_0423	450089	450508	-	conserved hypothetical protein		gene	gene423	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0423
AHA_0424	AHA_0424		AHA_0424	449431	450123	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883	gene	gene422	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0424
AHA_0425	AHA_0425	aphA	aphA	450541	451434	+	HAD-superfamily (subfamily iiib) phosphatase	identified by match to protein family HMM PF03767%3B match to protein family HMM TIGR01672	gene	gene424	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0425
AHA_0426	AHA_0426		AHA_0426	451497	452342	-	zinc protease	identified by match to protein family HMM PF04228	gene	gene425	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0426
AHA_0427	AHA_0427		AHA_0427	452450	452713	-	conserved hypothetical protein		gene	gene426	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0427
AHA_0428	AHA_0428		AHA_0428	452830	453708	+	conserved hypothetical protein	identified by match to protein family HMM TIGR00277	gene	gene427	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0428
AHA_0429	AHA_0429		AHA_0429	453826	454347	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene428	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0429
AHA_0430	AHA_0430		AHA_0430	454474	454650	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene429	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0430
AHA_0431	AHA_0431		AHA_0431	455122	456399	-	NhaP-type Na+/H+ and K+/H+ antiporters	identified by match to protein family HMM PF00999	gene	gene430	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0431
AHA_0432	AHA_0432	metH	metH	456603	460286	+	methionine synthase	identified by match to protein family HMM PF00809%3B match to protein family HMM PF02310%3B match to protein family HMM PF02574%3B match to protein family HMM PF02607%3B match to protein family HMM PF02965%3B match to protein family HMM TIGR02082	gene	gene431	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0432
AHA_0433	AHA_0433		AHA_0433	460466	461422	+	ribosomal protein S6 modification protein	identified by match to protein family HMM PF02655%3B match to protein family HMM TIGR00768	gene	gene432	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0433
AHA_0434	AHA_0434	brnQ-1	brnQ-1	461811	463145	+	branched-chain amino acid transport system II carrier protein	identified by similarity to SP:P37011%3B match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene433	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0434
AHA_0435	AHA_0435		AHA_0435	463220	464431	-	sensory transduction protein kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672	gene	gene434	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0435
AHA_0436	AHA_0436		AHA_0436	464475	465746	-	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene435	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0436
AHA_0437	AHA_0437		AHA_0437	465736	466215	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene436	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0437
AHA_0438	AHA_0438		AHA_0438	466510	467991	+	hemolysin	identified by match to protein family HMM PF01117%3B match to protein family HMM PF03440	gene	gene437	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0438
AHA_0439	AHA_0439		AHA_0439	468494	470485	+	thiamine biosynthesis protein ThiC	identified by match to protein family HMM PF01964%3B match to protein family HMM TIGR00190	gene	gene438	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0439
AHA_0440	AHA_0440		AHA_0440	470482	472098	+	thiamine monophosphate synthase	identified by match to protein family HMM PF02581%3B match to protein family HMM TIGR00097%3B match to protein family HMM TIGR00693	gene	gene439	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0440
AHA_0441	AHA_0441	thiF	thiF	472161	472919	+	thiazole biosynthesis adenylyltransferase ThiF	identified by similarity to SP:P30138%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237	gene	gene440	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0441
AHA_0442	AHA_0442	thiS	thiS	472889	473122	+	thiamine biosynthesis protein ThiS	identified by match to protein family HMM PF02597%3B match to protein family HMM TIGR01683	gene	gene441	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0442
AHA_0443	AHA_0443	thiG	thiG	473109	473891	+	thiazole biosynthesis protein ThiG	identified by match to protein family HMM PF05690	gene	gene442	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0443
AHA_0444	AHA_0444	thiH	thiH	473927	475198	+	thiazole biosynthesis protein ThiH	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR02351	gene	gene443	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0444
AHA_0445	AHA_0445		AHA_0445	476309	478207	+	conserved hypothetical protein		gene	gene444	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0445
AHA_0446	AHA_0446		AHA_0446	478359	479021	-	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene445	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0446
AHA_0447	AHA_0447		AHA_0447	479239	479820	+	conserved hypothetical protein		gene	gene446	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0447
AHA_0448	AHA_0448		AHA_0448	479899	480315	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene447	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0448
AHA_0449	AHA_0449		AHA_0449	480428	480745	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene448	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0449
AHA_0450	AHA_0450		AHA_0450	481080	481985	+	GGDEF family protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene449	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0450
AHA_0451	AHA_0451		AHA_0451	482444	483718	+	serine transporter	identified by match to protein family HMM PF03222	gene	gene450	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0451
AHA_0452	AHA_0452		AHA_0452	483782	484489	-	protein ExoD	identified by match to protein family HMM PF06055	gene	gene451	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0452
AHA_0453	AHA_0453		AHA_0453	484671	485291	+	conserved hypothetical protein		gene	gene452	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0453
AHA_0454	AHA_0454		AHA_0454	485820	486125	-	putative mono-oxygenase		gene	gene454	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0454
AHA_0455	AHA_0455		AHA_0455	485288	485839	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene453	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0455
AHA_0456	AHA_0456		AHA_0456	486609	487043	-	acetyltransferase	identified by match to protein family HMM PF00583	gene	gene456	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0456
AHA_0457	AHA_0457		AHA_0457	486247	486612	+	putative transcriptional regulator	identified by match to protein family HMM PF01638	gene	gene455	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0457
AHA_0458	AHA_0458		AHA_0458	487169	487858	-	conserved hypothetical protein		gene	gene457	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0458
AHA_0459	AHA_0459		AHA_0459	487871	488908	-	fucose 4-O-acetylase		gene	gene458	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0459
AHA_0460	AHA_0460		AHA_0460	489085	489720	-	PepSY-associated TM helix family	identified by match to protein family HMM PF03929	gene	gene459	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0460
AHA_0461	AHA_0461		AHA_0461	489771	491813	-	TonB-dependent siderophore receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783	gene	gene460	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0461
AHA_0462	AHA_0462		AHA_0462	492040	492951	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene461	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0462
AHA_0463	AHA_0463		AHA_0463	493069	494283	-	hypothetical outer membrane protein	identified by match to protein family HMM PF00267	gene	gene462	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0463
AHA_0464	AHA_0464	glpX	glpX	494354	495364	+	fructose-1%2C6-bisphosphatase%2C class II	identified by match to protein family HMM PF03320%3B match to protein family HMM TIGR00330	gene	gene463	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0464
AHA_0465	AHA_0465		AHA_0465	495522	495773	+	proteinase inhibitor	identified by match to protein family HMM PF03692	gene	gene464	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0465
AHA_0466	AHA_0466		AHA_0466	495930	497093	-	HemY protein	identified by match to protein family HMM PF07219%3B match to protein family HMM PF07721	gene	gene465	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0466
AHA_0467	AHA_0467		AHA_0467	497104	498180	-	putative uroporphyrin-III C-methyltransferase	identified by match to protein family HMM PF04375	gene	gene466	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0467
AHA_0468	AHA_0468	hemD	hemD	498177	498911	-	uroporphyrinogen-III synthase	identified by match to protein family HMM PF02602	gene	gene467	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0468
AHA_0469	AHA_0469	hemC	hemC	498908	499900	-	porphobilinogen deaminase	identified by match to protein family HMM PF01379%3B match to protein family HMM PF03900%3B match to protein family HMM TIGR00212	gene	gene468	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0469
AHA_0470	AHA_0470	cyaA	cyaA	500161	502695	+	adenylate cyclase%2C class I	identified by similarity to SP:P00936%3B match to protein family HMM PF01295	gene	gene469	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0470
AHA_0471	AHA_0471		AHA_0471	502819	503490	-	carboxylesterase 2	identified by match to protein family HMM PF02230	gene	gene470	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0471
AHA_0472	AHA_0472		AHA_0472	503487	503801	-	protein CyaY	identified by match to protein family HMM PF01491	gene	gene471	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0472
AHA_0473	AHA_0473	lysA	lysA	504072	505322	+	diaminopimelate decarboxylase	identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01048	gene	gene472	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0473
AHA_0474	AHA_0474	dapF	dapF	505388	506218	+	diaminopimelate epimerase	identified by match to protein family HMM PF01678%3B match to protein family HMM TIGR00652	gene	gene473	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0474
AHA_0475	AHA_0475		AHA_0475	506329	506979	+	protein of unknown function	identified by match to protein family HMM PF04340	gene	gene474	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0475
AHA_0476	AHA_0476	xerC	xerC	506972	507949	+	tyrosine recombinase XerC	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02224	gene	gene475	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0476
AHA_0477	AHA_0477		AHA_0477	507990	508700	+	HAD-superfamily hydrolase%2C subfamily IA%2C variant 1 family protein	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01549	gene	gene476	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0477
AHA_0478	AHA_0478		AHA_0478	508799	509209	-	conserved hypothetical protein		gene	gene477	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0478
AHA_0479	AHA_0479		AHA_0479	509242	510768	-	transporter%2C small conductance mechanosensitive ion channel (MscS) family	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00924	gene	gene478	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0479
AHA_0480	AHA_0480		AHA_0480	510884	511297	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene479	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0480
AHA_0481	AHA_0481		AHA_0481	511307	512077	-	glutamine amidotransferase%2C class I	identified by match to protein family HMM PF00117%3B match to protein family HMM PF07722	gene	gene480	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0481
AHA_0482	AHA_0482		AHA_0482	512439	513248	-	phosphatase YidA	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene481	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0482
AHA_0483	AHA_0483		AHA_0483	513353	515047	-	conserved hypothetical protein	identified by match to protein family HMM PF03961	gene	gene482	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0483
AHA_0484	AHA_0484		AHA_0484	515309	516283	+	membrane-fusion protein	identified by match to protein family HMM PF00529	gene	gene483	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0484
AHA_0485	AHA_0485		AHA_0485	516276	517205	+	ABC-type multidrug transport system%2C ATPase component	identified by match to protein family HMM PF00005	gene	gene484	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0485
AHA_0486	AHA_0486		AHA_0486	517312	518406	+	ABC-type multidrug transport system%2C permease component	identified by match to protein family HMM PF01061	gene	gene485	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0486
AHA_0487	AHA_0487		AHA_0487	518484	519641	-	competence/damage-inducible protein CinA	identified by match to protein family HMM PF00994	gene	gene486	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0487
AHA_0488	AHA_0488		AHA_0488	519702	521000	-	HD-GYP domain	identified by match to protein family HMM PF01966	gene	gene487	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0488
AHA_0489	AHA_0489	metA	metA	521085	522038	+	homoserine O-succinyltransferase	identified by match to protein family HMM PF04204%3B match to protein family HMM TIGR01001	gene	gene488	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0489
AHA_0490	AHA_0490		AHA_0490	522047	522619	-	protein tyrosine phosphatase		gene	gene489	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0490
AHA_0491	AHA_0491		AHA_0491	522713	523183	+	transcriptional regulator%2C AsnC family	identified by match to protein family HMM PF01037	gene	gene490	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0491
AHA_0492	AHA_0492		AHA_0492	523241	525205	-	sulfatase	identified by match to protein family HMM PF00884	gene	gene491	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0492
AHA_0493	AHA_0493		AHA_0493	525465	525722	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene492	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0493
AHA_0494	AHA_0494		AHA_0494	525968	527935	+	TonB-dependent copper receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01778	gene	gene493	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0494
AHA_0495	AHA_0495		AHA_0495	528005	529678	+	glycosidase	identified by match to protein family HMM PF00128	gene	gene494	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0495
AHA_0496	AHA_0496		AHA_0496	529733	530263	-	putative transporter%2C putative Mg2+ transporter-C (MgtC) family	identified by match to protein family HMM PF02308	gene	gene495	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0496
AHA_0497	AHA_0497		AHA_0497	530291	531733	-	conserved hypothetical protein		gene	gene496	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0497
AHA_0498	AHA_0498		AHA_0498	531920	532378	+	Pab N-terminal acetyltransferase	identified by match to protein family HMM PF00583	gene	gene497	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0498
AHA_0499	AHA_0499		AHA_0499	532393	532638	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene498	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0499
AHA_0500	AHA_0500		AHA_0500	532695	533441	+	NADP-dependent l-serine/l-allo-threonine dehydrogenase ydfg	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370	gene	gene499	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0500
AHA_0501	AHA_0501		AHA_0501	533503	535107	-	cytosol non-specific dipeptidase	identified by match to protein family HMM PF03577	gene	gene500	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0501
AHA_0502	AHA_0502		AHA_0502	535441	535893	+	conserved hypothetical protein		gene	gene501	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0502
AHA_0503	AHA_0503		AHA_0503	536092	536673	-	conserved hypothetical protein		gene	gene502	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0503
AHA_0504	AHA_0504		AHA_0504	536885	538060	+	NADH-dependent iron-containing alcohol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene503	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0504
AHA_0505	AHA_0505		AHA_0505	538265	538963	-	glutathione S-transferase III	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene504	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0505
AHA_0506	AHA_0506		AHA_0506	539003	540271	-	O-acetylhomoserine sulfhydrylase MetY	identified by match to protein family HMM PF01041%3B match to protein family HMM PF01053%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01326	gene	gene505	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0506
AHA_0507	AHA_0507		AHA_0507	540428	540604	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene506	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0507
AHA_0508	AHA_0508		AHA_0508	540675	542438	+	bacterial extracellular solute-binding proteins%2C family 5	identified by match to protein family HMM PF00496	gene	gene507	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0508
AHA_0509	AHA_0509		AHA_0509	542474	542869	+	thioesterase family protein	identified by match to protein family HMM PF03061	gene	gene508	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0509
AHA_0510	AHA_0510		AHA_0510	542901	543614	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene509	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0510
AHA_0511	AHA_0511		AHA_0511	543679	544422	-	lipase chaperone%2C putative		gene	gene510	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0511
AHA_0512	AHA_0512		AHA_0512	544419	545420	-	lipase	identified by match to protein family HMM PF00561	gene	gene511	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0512
AHA_0513	AHA_0513		AHA_0513	545500	545622	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene512	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0513
AHA_0514	AHA_0514		AHA_0514	545621	546046	+	conserved hypothetical protein		gene	gene513	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0514
AHA_0515	AHA_0515		AHA_0515	546068	546682	+	superoxide dismutase (Mn)	identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777	gene	gene514	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0515
AHA_0516	AHA_0516		AHA_0516	546736	547761	-	sanA protein	identified by match to protein family HMM PF02698	gene	gene515	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0516
AHA_0517	AHA_0517		AHA_0517	547928	550675	-	collagenase family	identified by match to protein family HMM PF01752	gene	gene516	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0517
AHA_0518	AHA_0518		AHA_0518	551179	551550	-	putative fimbrial protein	identified by similarity to GB:CAA54702.1	gene	gene517	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0518
AHA_0519	AHA_0519		AHA_0519	552789	553331	+	fimbrial protein	identified by match to protein family HMM PF00419	gene	gene518	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0519
AHA_0520	AHA_0520		AHA_0520	553413	553820	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene519	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0520
AHA_0521	AHA_0521		AHA_0521	553888	556422	+	outer membrane usher protein	identified by match to protein family HMM PF00577	gene	gene520	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0521
AHA_0522	AHA_0522		AHA_0522	556433	557164	+	fimbrial chaperone protein	identified by match to protein family HMM PF00345%3B match to protein family HMM PF02753	gene	gene521	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0522
AHA_0523	AHA_0523		AHA_0523	557169	558203	+	fimbrial protein	identified by similarity to GB:AAV78666.1	gene	gene522	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0523
AHA_0524	AHA_0524		AHA_0524	558215	558766	+	fimbrial protein	identified by match to protein family HMM PF00419	gene	gene523	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0524
AHA_0525	AHA_0525		AHA_0525	558769	559452	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene524	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0525
AHA_0526	AHA_0526		AHA_0526	559449	560009	-	transcriptional regulatory protein%2C C terminal	identified by match to protein family HMM PF00486	gene	gene525	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0526
AHA_0527	AHA_0527	menE	menE	560311	561717	-	O-succinylbenzoate-CoA ligase	identified by similarity to SP:P37353%3B match to protein family HMM PF00501%3B match to protein family HMM TIGR01923	gene	gene526	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0527
AHA_0528	AHA_0528	menC	menC	561728	562657	-	o-succinylbenzoic acid (OSB) synthetase	identified by match to protein family HMM TIGR01927	gene	gene527	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0528
AHA_0529	AHA_0529	menB	menB	562657	563517	-	naphthoate synthase	identified by similarity to SP:P0ABU0%3B match to protein family HMM PF00378%3B match to protein family HMM TIGR01929	gene	gene528	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0529
AHA_0530	AHA_0530		AHA_0530	563510	564280	-	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene529	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0530
AHA_0531	AHA_0531	menD	menD	564270	566000	-	2-succinyl-6-hydroxy-2%2C4-cyclohexadiene-1-carboxylate synthase/2-oxoglutarate decarboxylase	identified by similarity to SP:P17109%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00173	gene	gene530	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0531
AHA_0532	AHA_0532	menF	menF	566035	567381	-	menaquinone-specific isochorismate synthase	identified by similarity to SP:P38051%3B match to protein family HMM PF00425%3B match to protein family HMM TIGR00543	gene	gene531	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0532
AHA_0533	AHA_0533	menA	menA	567571	568494	+	1%2C4-dihydroxy-2-naphthoate octaprenyltransferase	identified by similarity to SP:P32166%3B match to protein family HMM PF01040%3B match to protein family HMM TIGR00751	gene	gene532	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0533
AHA_0534	AHA_0534		AHA_0534	568547	568816	+	conserved hypothetical protein		gene	gene533	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0534
AHA_0535	AHA_0535		AHA_0535	568896	570293	-	propeptide%2C PepSY amd peptidase M4:PepSY-associated TM helix	identified by match to protein family HMM PF03413%3B match to protein family HMM PF03929	gene	gene534	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0535
AHA_0536	AHA_0536		AHA_0536	570566	570961	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene535	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0536
AHA_0537	AHA_0537		AHA_0537	571145	571435	-	conserved hypothetical protein	identified by match to protein family HMM PF03692	gene	gene536	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0537
AHA_0538	AHA_0538		AHA_0538	571508	572884	-	ATP-independent RNA helicase DbpA	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880	gene	gene537	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0538
AHA_0539	AHA_0539		AHA_0539	573287	574654	+	nucleoside permease NupC	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670	gene	gene538	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0539
AHA_0540	AHA_0540		AHA_0540	574747	575247	-	putative hydrolase	identified by match to protein family HMM PF04307	gene	gene539	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0540
AHA_0541	AHA_0541		AHA_0541	575340	575894	-	cytochrome B	identified by match to protein family HMM PF01292	gene	gene540	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0541
AHA_0542	AHA_0542		AHA_0542	575943	576212	-	conserved hypothetical protein	identified by similarity to GB:AAY38542.1	gene	gene541	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0542
AHA_0543	AHA_0543		AHA_0543	576334	576786	-	YaiI/YqxD family protein	identified by match to protein family HMM PF02639	gene	gene542	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0543
AHA_0544	AHA_0544		AHA_0544	576898	577884	+	transporter%2C CorA-like family	identified by match to protein family HMM PF01544	gene	gene543	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0544
AHA_0545	AHA_0545		AHA_0545	577894	578412	+	conserved hypothetical protein		gene	gene544	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0545
AHA_0546	AHA_0546		AHA_0546	578455	578703	-	conserved hypothetical protein		gene	gene545	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0546
AHA_0547	AHA_0547		AHA_0547	578767	579342	-	molecular chaperones	identified by match to protein family HMM PF00226	gene	gene546	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0547
AHA_0548	AHA_0548		AHA_0548	579339	581294	-	sodium/hydrogen exchanger family protein	identified by match to protein family HMM PF00999	gene	gene547	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0548
AHA_0549	AHA_0549	mtlR	mtlR	581303	581824	-	mannitol operon repressor	identified by similarity to SP:P36563%3B match to protein family HMM PF05068	gene	gene548	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0549
AHA_0550	AHA_0550		AHA_0550	581933	583201	-	mannitol-1-phosphate 5-dehydrogenase	identified by match to protein family HMM PF01232%3B match to protein family HMM PF08125	gene	gene549	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0550
AHA_0551	AHA_0551		AHA_0551	583116	585038	-	pts system mannitol-specific eiicba component (eiicba-mtl) (eii-mtl)	identified by match to protein family HMM PF00359%3B match to protein family HMM PF02302%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00851	gene	gene550	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0551
AHA_0552	AHA_0552		AHA_0552	585493	586539	-	transport protein		gene	gene551	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0552
AHA_0553	AHA_0553		AHA_0553	586561	587286	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene552	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0553
AHA_0554	AHA_0554	rnb	rnb	587343	589364	-	exoribonuclease II	identified by match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02062	gene	gene553	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0554
AHA_0555	AHA_0555		AHA_0555	589465	590364	-	chromosome initiation inhibitor	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene554	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0555
AHA_0556	AHA_0556		AHA_0556	590632	591255	-	autoinducer synthesis protein AhyI	identified by match to protein family HMM PF00765	gene	gene555	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0556
AHA_0557	AHA_0557	ahyR	ahyR	591318	592103	+	transcriptional activator protein AhyR	identified by similarity to SP:P0A3J6%3B match to protein family HMM PF00196%3B match to protein family HMM PF03472%3B match to protein family HMM PF04967	gene	gene556	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0557
AHA_0558	AHA_0558		AHA_0558	592316	592936	+	arginine exporter protein ArgO	identified by match to protein family HMM PF01810%3B match to protein family HMM TIGR00948	gene	gene557	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0558
AHA_0559	AHA_0559		AHA_0559	593051	595042	+	2'%2C3'-cyclic-nucleotide 2'-phosphodiesterase	identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872	gene	gene558	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0559
AHA_0560	AHA_0560		AHA_0560	595108	595584	-	surface antigen family protein	identified by match to protein family HMM PF05433	gene	gene559	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0560
AHA_0561	AHA_0561		AHA_0561	595722	596174	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene560	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0561
AHA_0562	AHA_0562		AHA_0562	596295	596750	-	conserved hypothetical protein		gene	gene561	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0562
AHA_0563	AHA_0563		AHA_0563	596803	598605	-	aminopeptidase P	identified by match to protein family HMM PF00557	gene	gene562	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0563
AHA_0564	AHA_0564		AHA_0564	598639	599304	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene563	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0564
AHA_0565	AHA_0565	pckA	pckA	599480	601105	-	phosphoenolpyruvate carboxykinase (ATP)	identified by match to protein family HMM PF01293%3B match to protein family HMM TIGR00224	gene	gene564	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0565
AHA_0566	AHA_0566	hslO	hslO	601255	602142	-	33 kDa chaperonin HslO	identified by similarity to SP:P0A6Y5%3B match to protein family HMM PF01430	gene	gene565	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0566
AHA_0567	AHA_0567		AHA_0567	602248	602838	-	heat shock protein 15	identified by match to protein family HMM PF01479	gene	gene566	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0567
AHA_0568	AHA_0568	gspC	gspC	602786	603709	+	general secretion pathway protein C	identified by similarity to GB:AAA58784.1%3B match to protein family HMM TIGR01713	gene	gene567	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0568
AHA_0569	AHA_0569	gspD	gspD	603731	605764	+	general secretion pathway protein D	identified by similarity to SP:P45758%3B match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM TIGR02517	gene	gene568	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0569
AHA_0570	AHA_0570	gspE	gspE	605764	607269	+	general secretory pathway protein E	identified by similarity to SP:P31741%3B match to protein family HMM PF00437%3B match to protein family HMM TIGR02533	gene	gene569	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0570
AHA_0571	AHA_0571	gspF	gspF	607271	608491	+	general secretion pathway protein F	identified by match to protein family HMM PF00482%3B match to protein family HMM TIGR02120	gene	gene570	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0571
AHA_0572	AHA_0572	gspG	gspG	608607	609038	+	general secretion pathway protein G	identified by similarity to SP:P31733%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01710%3B match to protein family HMM TIGR02532	gene	gene571	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0572
AHA_0573	AHA_0573	gspH	gspH	609202	609753	+	general secretion pathway protein H	identified by similarity to SP:P31735%3B match to protein family HMM TIGR01708%3B match to protein family HMM TIGR02532	gene	gene572	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0573
AHA_0574	AHA_0574	gspI	gspI	609750	610109	+	general secretion pathway protein I	identified by similarity to SP:P31737%3B match to protein family HMM PF02501%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01707%3B match to protein family HMM TIGR02532	gene	gene573	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0574
AHA_0575	AHA_0575	gspJ	gspJ	610178	610807	+	general secretion pathway protein J	identified by similarity to SP:P31739%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR01711%3B match to protein family HMM TIGR02532	gene	gene574	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0575
AHA_0576	AHA_0576	gspK	gspK	610897	611922	+	general secretion pathway protein K	identified by similarity to SP:P31760%3B match to protein family HMM PF03934	gene	gene575	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0576
AHA_0577	AHA_0577	gspL	gspL	612042	613226	+	general secretion pathway protein L	identified by match to protein family HMM PF05134%3B match to protein family HMM TIGR01709	gene	gene576	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0577
AHA_0578	AHA_0578	gspM	gspM	613223	613714	+	general secretion pathway protein M	identified by similarity to SP:P41850%3B match to protein family HMM PF04612	gene	gene577	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0578
AHA_0579	AHA_0579	gspN	gspN	613776	614531	+	bacterial type II secretion system protein N	identified by match to protein family HMM PF01203	gene	gene578	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0579
AHA_0580	AHA_0580		AHA_0580	614592	615503	-	transcriptional regulator%2C LuxR family	identified by match to protein family HMM PF00196	gene	gene579	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0580
AHA_0581	AHA_0581	tyrS-1	tyrS-1	615563	616831	+	tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene580	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0581
AHA_0582	AHA_0582		AHA_0582	616925	617593	-	HAD-superfamily hydrolase%2C subfamily IA%2C variant 3	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509	gene	gene581	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0582
AHA_0583	AHA_0583		AHA_0583	617780	618340	+	ADP compounds hydrolase NudE	identified by match to protein family HMM PF00293	gene	gene582	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0583
AHA_0584	AHA_0584	cysQ-1	cysQ-1	618378	619190	+	3'(2')%2C5'-bisphosphate nucleotidase	identified by match to protein family HMM PF00459%3B match to protein family HMM TIGR01331	gene	gene583	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0584
AHA_0585	AHA_0585		AHA_0585	619602	620873	+	serine transporter	identified by match to protein family HMM PF01490	gene	gene584	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0585
AHA_0586	AHA_0586		AHA_0586	620947	621285	-	protein CsaA	identified by match to protein family HMM PF01588%3B match to protein family HMM TIGR02222	gene	gene585	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0586
AHA_0587	AHA_0587		AHA_0587	621370	622122	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene586	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0587
AHA_0588	AHA_0588	metJ	metJ	622158	622481	-	met repressor	identified by similarity to SP:P0A8U6%3B match to protein family HMM PF01340	gene	gene587	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0588
AHA_0589	AHA_0589	metB	metB	622690	623853	+	O-succinylhomoserine (thiol)-lyase	identified by match to protein family HMM PF01053%3B match to protein family HMM TIGR02080	gene	gene588	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0589
AHA_0590	AHA_0590		AHA_0590	623853	626321	+	bifunctional aspartokinase/homoserine dehydrogenase II (akii-hdii)	identified by match to protein family HMM PF00696%3B match to protein family HMM PF00742%3B match to protein family HMM PF03447%3B match to protein family HMM TIGR00657	gene	gene589	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0590
AHA_0591	AHA_0591	ppc	ppc	626974	629607	-	phosphoenolpyruvate carboxylase	identified by match to protein family HMM PF00311	gene	gene590	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0591
AHA_0592	AHA_0592	argE	argE	629823	630968	-	acetylornithine deacetylase (ArgE)	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01892	gene	gene591	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0592
AHA_0593	AHA_0593	argC	argC	631237	632244	+	N-acetyl-gamma-glutamyl-phosphate reductase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01850	gene	gene592	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0593
AHA_0594	AHA_0594	argB	argB	632268	633047	+	acetylglutamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00761	gene	gene593	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0594
AHA_0595	AHA_0595	argF-1	argF-1	632968	633984	+	ornithine carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658	gene	gene594	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0595
AHA_0596	AHA_0596	argG	argG	634039	635274	+	argininosuccinate synthase	identified by match to protein family HMM PF00764%3B match to protein family HMM TIGR00032	gene	gene595	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0596
AHA_0597	AHA_0597	argH	argH	635484	636869	+	argininosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00838	gene	gene596	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0597
AHA_0598	AHA_0598		AHA_0598	636990	637547	-	conserved hypothetical protein	identified by match to protein family HMM PF06114	gene	gene597	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0598
AHA_0599	AHA_0599		AHA_0599	638445	638906	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene598	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0599
AHA_0600	AHA_0600		AHA_0600	639107	639379	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene599	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0600
AHA_0601	AHA_0601		AHA_0601	639428	639769	-	integral membrane protein	identified by match to protein family HMM PF06961	gene	gene600	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0601
AHA_0602	AHA_0602		AHA_0602	639766	640356	-	maltose O-acetyltransferase	identified by match to protein family HMM PF00132	gene	gene601	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0602
AHA_0603	AHA_0603		AHA_0603	640437	641699	-	MgtC/SapB transporter		gene	gene602	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0603
AHA_0604	AHA_0604		AHA_0604	641909	642910	+	sulfate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR00971	gene	gene603	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0604
AHA_0605	AHA_0605		AHA_0605	642967	643542	+	conserved hypothetical protein	identified by match to protein family HMM PF06821	gene	gene604	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0605
AHA_0606	AHA_0606	cysT	cysT	643795	644661	+	sulfate/thiosulfate ABC transporter%2C permease protein CysT	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02139	gene	gene605	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0606
AHA_0607	AHA_0607	cysW	cysW	644658	645554	+	sulfate/thiosulfate ABC transporter%2C permease protein CysW	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00969%3B match to protein family HMM TIGR02140	gene	gene606	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0607
AHA_0608	AHA_0608	cysA	cysA	645577	646644	+	sulfate/thiosulfate ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR00968	gene	gene607	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0608
AHA_0609	AHA_0609		AHA_0609	646821	647768	+	HTH-type transcriptional regulator cbl	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene608	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0609
AHA_0610	AHA_0610		AHA_0610	647841	649325	-	chitin binding protein	identified by match to protein family HMM PF03067	gene	gene609	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0610
AHA_0611	AHA_0611		AHA_0611	649679	651376	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene610	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0611
AHA_0612	AHA_0612		AHA_0612	651672	653519	+	oligoendopeptidase F	identified by match to protein family HMM PF01432	gene	gene611	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0612
AHA_0613	AHA_0613		AHA_0613	653596	654387	+	conserved hypothetical protein		gene	gene612	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0613
AHA_0614	AHA_0614		AHA_0614	654401	656596	-	conserved hypothetical protein		gene	gene613	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0614
AHA_0615	AHA_0615		AHA_0615	656878	657588	+	conserved hypothetical protein		gene	gene614	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0615
AHA_0616	AHA_0616		AHA_0616	657609	658952	+	conserved hypothetical protein		gene	gene615	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0616
AHA_0617	AHA_0617		AHA_0617	659059	662220	-	putative Tricorn protease homolog 1	identified by match to protein family HMM PF03572%3B match to protein family HMM PF07676	gene	gene616	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0617
AHA_0618	AHA_0618		AHA_0618	662465	662956	+	ErfK/YbiS/YcfS/YnhG family protein		gene	gene617	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0618
AHA_0619	AHA_0619		AHA_0619	663105	663824	+	AzlC family protein	identified by match to protein family HMM PF03591	gene	gene618	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0619
AHA_0620	AHA_0620		AHA_0620	664285	665811	+	conserved hypothetical protein		gene	gene619	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0620
AHA_0621	AHA_0621		AHA_0621	665849	666700	+	pyruvate formate lyase activating enzyme	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055	gene	gene620	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0621
AHA_0622	AHA_0622		AHA_0622	666893	667216	+	conserved hypothetical protein		gene	gene621	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0622
AHA_0623	AHA_0623		AHA_0623	667259	668182	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene622	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0623
AHA_0624	AHA_0624		AHA_0624	668243	669439	-	aromatic-amino-acid aminotransferase	identified by match to protein family HMM PF00155	gene	gene623	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0624
AHA_0625	AHA_0625		AHA_0625	669609	669884	-	conserved hypothetical protein	identified by match to protein family HMM PF02583	gene	gene624	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0625
AHA_0626	AHA_0626		AHA_0626	669956	670915	+	heavy metal transporter	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene625	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0626
AHA_0627	AHA_0627		AHA_0627	670979	671389	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene626	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0627
AHA_0628	AHA_0628		AHA_0628	671620	675708	+	pullulanase	identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02103	gene	gene627	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0628
AHA_0629	AHA_0629		AHA_0629	675901	678399	-	lead%2C cadmium%2C zinc and mercury transporting ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01512%3B match to protein family HMM TIGR01525	gene	gene628	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0629
AHA_0630	AHA_0630		AHA_0630	678536	679036	+	thiol peroxidase		gene	gene629	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0630
AHA_0631	AHA_0631		AHA_0631	679099	679917	-	conserved hypothetical protein		gene	gene630	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0631
AHA_0632	AHA_0632		AHA_0632	680086	681306	+	ATP-dependent RNA helicase%2C dead box family	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene631	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0632
AHA_0633	AHA_0633		AHA_0633	681402	682895	+	conserved hypothetical protein		gene	gene632	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0633
AHA_0634	AHA_0634		AHA_0634	682969	683757	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene633	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0634
AHA_0635	AHA_0635		AHA_0635	683754	684869	-	endonuclease/exonuclease/phosphatase family	identified by match to protein family HMM PF03372	gene	gene634	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0635
AHA_0636	AHA_0636		AHA_0636	685279	686838	-	aerotaxis receptor Aer	identified by match to protein family HMM PF00015%3B match to protein family HMM TIGR00229	gene	gene635	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0636
AHA_0637	AHA_0637		AHA_0637	687080	687910	-	caax amino terminal protease family	identified by match to protein family HMM PF02517	gene	gene636	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0637
AHA_0638	AHA_0638		AHA_0638	688074	688364	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene637	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0638
AHA_0639	AHA_0639		AHA_0639	688428	688802	-	conserved hypothetical protein	identified by match to protein family HMM PF06062	gene	gene638	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0639
AHA_0640	AHA_0640		AHA_0640	689124	690239	+	carbohydrate diacid regulator	identified by match to protein family HMM PF05651	gene	gene639	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0640
AHA_0641	AHA_0641		AHA_0641	690359	691621	+	transporter%2C gluconate:H+ symporter (GntP) family	identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600	gene	gene640	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0641
AHA_0642	AHA_0642		AHA_0642	691631	692764	+	glycerate kinase 2	identified by match to protein family HMM PF02595%3B match to protein family HMM TIGR00045	gene	gene641	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0642
AHA_0643	AHA_0643		AHA_0643	692975	693538	+	putative membrane protein	identified by match to protein family HMM PF07298	gene	gene642	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0643
AHA_0644	AHA_0644		AHA_0644	693601	694134	+	glutathione peroxidase	identified by match to protein family HMM PF00255	gene	gene643	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0644
AHA_0645	AHA_0645		AHA_0645	694196	695152	+	transcriptional regulators%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene644	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0645
AHA_0646	AHA_0646		AHA_0646	695335	696531	+	nucleoside permease	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670	gene	gene645	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0646
AHA_0647	AHA_0647		AHA_0647	696794	697288	-	methylated-DNA--protein-cysteine methyltransferase	identified by match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589	gene	gene646	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0647
AHA_0648	AHA_0648		AHA_0648	697322	697738	-	peptidyl-tRNA hydrolase domain protein	identified by match to protein family HMM PF00472	gene	gene647	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0648
AHA_0649	AHA_0649		AHA_0649	697940	698278	+	nitrogen regulatory protein P-II	identified by match to protein family HMM PF00543	gene	gene648	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0649
AHA_0650	AHA_0650		AHA_0650	698486	699493	+	iron binding protein FbpA	identified by match to protein family HMM PF01547	gene	gene649	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0650
AHA_0651	AHA_0651	fbpB	fbpB	699534	701159	+	iron(III) ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene650	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0651
AHA_0652	AHA_0652		AHA_0652	701229	702263	+	iron(III) ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01189	gene	gene651	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0652
AHA_0653	AHA_0653		AHA_0653	702367	703272	+	TyrA protein	identified by match to protein family HMM PF04261%3B match to protein family HMM TIGR01413	gene	gene652	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0653
AHA_0654	AHA_0654	argR	argR	703359	703829	-	arginine repressor	identified by similarity to SP:P0A6D0%3B match to protein family HMM PF01316%3B match to protein family HMM PF02863%3B match to protein family HMM TIGR01529	gene	gene653	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0654
AHA_0655	AHA_0655		AHA_0655	704031	704771	+	arginine ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene654	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0655
AHA_0656	AHA_0656		AHA_0656	704797	705534	+	arginine ABC transporter%2C periplasmic arginine-binding protein ArtI	identified by match to protein family HMM PF00497	gene	gene655	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0656
AHA_0657	AHA_0657		AHA_0657	705538	706188	+	arginine ABC transporter%2C permease protein ArtQ	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene656	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0657
AHA_0658	AHA_0658		AHA_0658	706191	706853	+	arginine ABC transporter%2C permease protein ArtM	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene657	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0658
AHA_0659	AHA_0659	mdh	mdh	707075	708010	+	malate dehydrogenase%2C NAD-dependent	identified by match to protein family HMM PF00056%3B match to protein family HMM PF02866%3B match to protein family HMM TIGR01772	gene	gene658	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0659
AHA_0660	AHA_0660		AHA_0660	708135	709046	+	sodium-type flagellar motor component		gene	gene659	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0660
AHA_0661	AHA_0661		AHA_0661	709149	710342	-	flavohemoprotein	identified by match to protein family HMM PF00042%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene660	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0661
AHA_0662	AHA_0662		AHA_0662	710453	710920	+	Rrf2 family protein	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738	gene	gene661	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0662
AHA_0663	AHA_0663		AHA_0663	710954	712234	-	putative transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene662	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0663
AHA_0664	AHA_0664		AHA_0664	712275	713066	-	putative cytochrome C assembly protein	identified by match to protein family HMM PF01578	gene	gene663	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0664
AHA_0665	AHA_0665	ffh	ffh	713341	714717	+	signal recognition particle protein	identified by similarity to SP:P07019%3B match to protein family HMM PF00448%3B match to protein family HMM PF02881%3B match to protein family HMM PF02978%3B match to protein family HMM TIGR00959	gene	gene664	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0665
AHA_0666	AHA_0666	rpsP	rpsP	714902	715150	+	ribosomal protein S16	identified by match to protein family HMM PF00886%3B match to protein family HMM TIGR00002	gene	gene665	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0666
AHA_0667	AHA_0667	rimM	rimM	715175	715696	+	16S rRNA processing protein RimM	identified by match to protein family HMM PF01782%3B match to protein family HMM PF05239%3B match to protein family HMM TIGR02273	gene	gene666	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0667
AHA_0668	AHA_0668	trmD	trmD	715731	716480	+	tRNA (guanine-N1)-methyltransferase	identified by match to protein family HMM PF01746%3B match to protein family HMM TIGR00088	gene	gene667	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0668
AHA_0669	AHA_0669	rplS	rplS	716513	716860	+	ribosomal protein L19	identified by match to protein family HMM PF01245%3B match to protein family HMM TIGR01024	gene	gene668	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0669
AHA_0670	AHA_0670		AHA_0670	716964	717293	-	1%2C4-alpha-glucan branching enzyme		gene	gene669	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0670
AHA_0671	AHA_0671	mutH	mutH	717376	718050	-	DNA mismatch repair endonuclease MutH	identified by match to protein family HMM PF02976%3B match to protein family HMM TIGR02248	gene	gene670	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0671
AHA_0672	AHA_0672		AHA_0672	718784	719311	+	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene671	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0672
AHA_0673	AHA_0673	ptsI-1	ptsI-1	719326	721605	+	phosphoenolpyruvate-protein phosphotransferase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF01590%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417	gene	gene672	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0673
AHA_0674	AHA_0674	lgt	lgt	721673	722497	+	prolipoprotein diacylglyceryl transferase	identified by match to protein family HMM PF01790%3B match to protein family HMM TIGR00544	gene	gene673	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0674
AHA_0675	AHA_0675	thyA	thyA	722497	723291	+	thymidylate synthase	identified by match to protein family HMM PF00303	gene	gene674	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0675
AHA_0676	AHA_0676	nhaA	nhaA	723518	724708	+	Na+/H+ antiporter NhaA	identified by similarity to SP:P13738%3B match to protein family HMM PF06965%3B match to protein family HMM TIGR00773	gene	gene675	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0676
AHA_0677	AHA_0677	nhaR	nhaR	725099	726031	+	transcriptional activator protein NhaR	identified by similarity to SP:P0A9G2%3B match to protein family HMM PF00126	gene	gene676	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0677
AHA_0678	AHA_0678		AHA_0678	726057	726383	+	nodulation protein NolR	identified by match to protein family HMM PF01022%3B match to protein family HMM PF01638	gene	gene677	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0678
AHA_0679	AHA_0679	rpsT	rpsT	726434	726697	-	ribosomal protein S20	identified by match to protein family HMM PF01649%3B match to protein family HMM TIGR00029	gene	gene678	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0679
AHA_0680	AHA_0680	mviN	mviN	726889	728454	+	integral membrane protein MviN	identified by match to protein family HMM PF03023%3B match to protein family HMM TIGR01695	gene	gene679	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0680
AHA_0681	AHA_0681	ribF	ribF	728596	729570	+	riboflavin biosynthesis protein RibF	identified by match to protein family HMM PF01687%3B match to protein family HMM PF06574%3B match to protein family HMM TIGR00083	gene	gene680	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0681
AHA_0682	AHA_0682	ileS	ileS	729570	732431	+	isoleucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM PF06827%3B match to protein family HMM TIGR00392	gene	gene681	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0682
AHA_0683	AHA_0683	lspA	lspA	732431	732934	+	signal peptidase II	identified by similarity to SP:P00804%3B match to protein family HMM PF01252%3B match to protein family HMM TIGR00077	gene	gene682	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0683
AHA_0684	AHA_0684	fkpB	fkpB	732931	733383	+	FKBP-type peptidyl-prolyl cis-trans isomerase FkpB	identified by match to protein family HMM PF00254	gene	gene683	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0684
AHA_0685	AHA_0685	ispH	ispH	733383	734318	+	4-hydroxy-3-methylbut-2-enyl diphosphate reductase	identified by match to protein family HMM PF02401%3B match to protein family HMM TIGR00216	gene	gene684	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0685
AHA_0686	AHA_0686		AHA_0686	734580	735083	+	putative type IV pilin	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene685	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0686
AHA_0687	AHA_0687	pilV	pilV	735080	735493	+	type IV pilus modification protein PilV	identified by match to protein family HMM TIGR02523%3B match to protein family HMM TIGR02532	gene	gene686	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0687
AHA_0688	AHA_0688		AHA_0688	735490	736584	+	putative type IV pilin		gene	gene687	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0688
AHA_0689	AHA_0689		AHA_0689	736595	737071	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene688	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0689
AHA_0690	AHA_0690		AHA_0690	737083	740436	+	type IV pilus biogenesis protein	identified by similarity to GB:AAA93502.1	gene	gene689	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0690
AHA_0691	AHA_0691		AHA_0691	740445	740846	+	type IV pilin	identified by similarity to GB:AAC38305.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene690	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0691
AHA_0692	AHA_0692		AHA_0692	740851	741237	-	type IV pilin	identified by similarity to GB:AAC38305.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene691	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0692
AHA_0693	AHA_0693		AHA_0693	741332	741868	+	putative type IV pilin	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene692	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0693
AHA_0694	AHA_0694		AHA_0694	741859	742482	+	putative type IV pilin	identified by match to protein family HMM TIGR02532	gene	gene693	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0694
AHA_0695	AHA_0695		AHA_0695	742484	743581	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene694	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0695
AHA_0696	AHA_0696		AHA_0696	743594	745693	+	putative type IV pilin	identified by match to protein family HMM TIGR02532	gene	gene695	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0696
AHA_0697	AHA_0697		AHA_0697	745767	747389	+	glutamine-dependent NAD(+) synthetase (NAD(+) synthase[glutamine-hydrolyzing])	identified by match to protein family HMM PF00795%3B match to protein family HMM PF02540%3B match to protein family HMM TIGR00552	gene	gene696	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0697
AHA_0698	AHA_0698	glnB	glnB	747399	747737	+	nitrogen regulatory protein P-II 1	identified by similarity to SP:P0A9Z1%3B match to protein family HMM PF00543	gene	gene697	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0698
AHA_0699	AHA_0699		AHA_0699	747748	748392	+	transcriptional regulatory protein		gene	gene698	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0699
AHA_0700	AHA_0700	luxS	luxS	748411	748920	+	S-Ribosylhomocysteinase (LuxS)	identified by similarity to SP:P45578%3B match to protein family HMM PF02664	gene	gene699	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0700
AHA_0701	AHA_0701		AHA_0701	748983	749948	-	GGDEF family protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene700	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0701
AHA_0702	AHA_0702	rnr	rnr	750140	752539	+	ribonuclease R	identified by match to protein family HMM PF00575%3B match to protein family HMM PF00773%3B match to protein family HMM PF08206%3B match to protein family HMM TIGR00358%3B match to protein family HMM TIGR02063	gene	gene701	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0702
AHA_0703	AHA_0703		AHA_0703	752536	753285	+	RNA methyltransferase%2C TrmH family%2C group 3	identified by match to protein family HMM PF00588%3B match to protein family HMM PF08032%3B match to protein family HMM TIGR00186	gene	gene702	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0703
AHA_0704	AHA_0704		AHA_0704	753296	753862	+	cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinase	identified by match to protein family HMM PF00027	gene	gene703	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0704
AHA_0705	AHA_0705		AHA_0705	753920	754369	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene704	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0705
AHA_0706	AHA_0706		AHA_0706	754597	755448	+	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene705	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0706
AHA_0707	AHA_0707		AHA_0707	755566	756402	+	transporter%2C dme family	identified by match to protein family HMM PF00892	gene	gene706	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0707
AHA_0708	AHA_0708		AHA_0708	756436	757284	-	conserved hypothetical protein		gene	gene707	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0708
AHA_0709	AHA_0709	mntH	mntH	757392	758630	-	manganese transport protein MntH	identified by similarity to SP:P0A769%3B match to protein family HMM PF01566%3B match to protein family HMM TIGR01197	gene	gene708	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0709
AHA_0710	AHA_0710	rpsF	rpsF	758853	759239	+	ribosomal protein S6	identified by match to protein family HMM PF01250%3B match to protein family HMM TIGR00166	gene	gene709	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0710
AHA_0711	AHA_0711	rpsR	rpsR	759270	759500	+	ribosomal protein S18	identified by match to protein family HMM PF01084%3B match to protein family HMM TIGR00165	gene	gene710	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0711
AHA_0712	AHA_0712	rplI	rplI	759553	759999	+	ribosomal protein L9	identified by match to protein family HMM PF01281%3B match to protein family HMM PF03948%3B match to protein family HMM TIGR00158	gene	gene711	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0712
AHA_0713	AHA_0713		AHA_0713	760101	760841	+	ferredoxin--NADP reductase	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene712	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0713
AHA_0714	AHA_0714		AHA_0714	760894	761211	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene713	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0714
AHA_0715	AHA_0715		AHA_0715	761574	762512	+	conserved hypothetical protein		gene	gene714	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0715
AHA_0716	AHA_0716		AHA_0716	762562	762765	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene715	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0716
AHA_0717	AHA_0717		AHA_0717	762774	763751	+	quinone oxidoreductase	identified by match to protein family HMM PF00107	gene	gene716	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0717
AHA_0718	AHA_0718		AHA_0718	763748	764185	+	conserved hypothetical protein		gene	gene717	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0718
AHA_0719	AHA_0719		AHA_0719	764205	767018	+	peptidase%2C M16B family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene718	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0719
AHA_0720	AHA_0720	gshA	gshA	767079	768668	+	glutamate--cysteine ligase	identified by match to protein family HMM PF04262%3B match to protein family HMM TIGR01434	gene	gene719	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0720
AHA_0721	AHA_0721		AHA_0721	768923	770137	+	conserved hypothetical protein		gene	gene720	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0721
AHA_0722	AHA_0722		AHA_0722	770220	772010	-	long-chain-fatty-acid--CoA ligase homolog	identified by match to protein family HMM PF00501	gene	gene721	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0722
AHA_0723	AHA_0723		AHA_0723	772197	772742	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene722	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0723
AHA_0724	AHA_0724	rimI	rimI	772768	773217	-	ribosomal-protein-alanine acetyltransferase	identified by match to protein family HMM PF00583%3B match to protein family HMM TIGR01575	gene	gene723	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0724
AHA_0725	AHA_0725		AHA_0725	773947	775593	+	ATPase family associated with various cellular activities (AAA)%2C putative	identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene724	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0725
AHA_0726	AHA_0726		AHA_0726	775781	777100	+	VWA domain containing CoxE-like family protein	identified by match to protein family HMM PF05762	gene	gene725	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0726
AHA_0727	AHA_0727		AHA_0727	777110	778114	-	diguanylate cyclase/phosphodiesterase domain 2	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene726	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0727
AHA_0728	AHA_0728		AHA_0728	778338	779258	+	tetratricopeptide repeat domain protein	identified by match to protein family HMM PF00515	gene	gene727	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0728
AHA_0729	AHA_0729		AHA_0729	779375	780184	+	GGDEF/response regulator receiver domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene728	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0729
AHA_0730	AHA_0730	prfC	prfC	780442	782028	+	peptide chain release factor 3	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00503	gene	gene729	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0730
AHA_0731	AHA_0731		AHA_0731	782197	782535	+	steroid delta-isomerase domain protein		gene	gene730	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0731
AHA_0732	AHA_0732		AHA_0732	782602	783096	-	transcriptional regulatory protein	identified by match to protein family HMM PF01047	gene	gene731	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0732
AHA_0733	AHA_0733		AHA_0733	783159	783617	+	alkylhydroperoxidase AhpD core	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene732	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0733
AHA_0734	AHA_0734		AHA_0734	783675	784613	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF00583%3B match to protein family HMM PF01047	gene	gene733	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0734
AHA_0735	AHA_0735	xenB	xenB	784819	785940	-	xenobiotic reductase B	identified by similarity to GB:AAF02539.1%3B match to protein family HMM PF00724	gene	gene734	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0735
AHA_0736	AHA_0736		AHA_0736	786045	786611	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene735	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0736
AHA_0737	AHA_0737		AHA_0737	786751	787707	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene736	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0737
AHA_0738	AHA_0738		AHA_0738	787858	788955	+	agmatine deiminase	identified by match to protein family HMM PF04371	gene	gene737	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0738
AHA_0739	AHA_0739		AHA_0739	789082	790785	+	putative amidase	identified by match to protein family HMM PF01425	gene	gene738	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0739
AHA_0740	AHA_0740		AHA_0740	792493	793254	+	beta-lactamase	identified by match to protein family HMM PF00753	gene	gene739	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0740
AHA_0741	AHA_0741		AHA_0741	793418	794710	+	conserved hypothetical protein		gene	gene740	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0741
AHA_0742	AHA_0742		AHA_0742	794781	796031	-	putative ATP-dependent RNA helicase RhlE	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene741	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0742
AHA_0743	AHA_0743		AHA_0743	796134	797003	-	regulatory protein%2C LysR:LysR%2C substrate-binding	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene742	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0743
AHA_0744	AHA_0744		AHA_0744	797223	798455	+	valanimycin resistance%2C putative	identified by match to protein family HMM PF07690	gene	gene743	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0744
AHA_0745	AHA_0745		AHA_0745	798462	798917	-	conserved hypothetical protein		gene	gene744	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0745
AHA_0746	AHA_0746		AHA_0746	799088	799996	+	conserved protein	identified by match to protein family HMM PF01887	gene	gene745	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0746
AHA_0747	AHA_0747		AHA_0747	800063	800356	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene746	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0747
AHA_0748	AHA_0748		AHA_0748	800502	801062	-	carbonic anhydrase	identified by match to protein family HMM PF00132	gene	gene747	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0748
AHA_0749	AHA_0749		AHA_0749	801320	801940	+	ribonuclease T2 family	identified by match to protein family HMM PF00445	gene	gene748	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0749
AHA_0750	AHA_0750		AHA_0750	802009	802293	+	conserved hypothetical protein		gene	gene749	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0750
AHA_0751	AHA_0751		AHA_0751	802290	803348	+	oxidoreductase%2C 2-nitropropane dioxygenase family	identified by match to protein family HMM PF03060	gene	gene750	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0751
AHA_0752	AHA_0752	rrsE	rrsE	803849	805385	+	16S ribosomal RNA		rRNA	gene751	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0752
AHA_0753	AHA_0753		AHA_0753	805590	805665	+	tRNA-Glu		tRNA	gene752	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0753
AHA_0754	AHA_0754	rrlE	rrlE	805896	808791	+	23S ribosomal RNA		rRNA	gene753	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0754
AHA_0755	AHA_0755	rrfE	rrfE	808907	809024	+	5S ribosomal RNA		rRNA	gene754	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0755
AHA_0756	AHA_0756		AHA_0756	809122	809198	+	tRNA-Asp		tRNA	gene755	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0756
AHA_0757	AHA_0757		AHA_0757	809221	810054	+	MutT/nudix family protein	identified by match to protein family HMM PF00293	gene	gene756	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0757
AHA_0758	AHA_0758		AHA_0758	810083	811306	-	two-component system sensor kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene757	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0758
AHA_0759	AHA_0759		AHA_0759	811363	812043	-	transcriptional regulatory protein CpxR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene758	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0759
AHA_0760	AHA_0760		AHA_0760	812205	813365	+	macrolide-specific efflux protein MacA	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene759	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0760
AHA_0761	AHA_0761		AHA_0761	813368	815314	+	macrolide-specific ABC-type efflux carrier	identified by match to protein family HMM PF00005%3B match to protein family HMM PF02687	gene	gene760	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0761
AHA_0762	AHA_0762		AHA_0762	815619	816455	-	glutamine/glutamate ABC transporter%2C periplasmic glutamine/glutamate-binding protein	identified by match to protein family HMM PF00497	gene	gene761	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0762
AHA_0763	AHA_0763		AHA_0763	816452	817213	-	ABC transporter	identified by match to protein family HMM PF00005	gene	gene762	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0763
AHA_0764	AHA_0764		AHA_0764	817210	817872	-	glutamine transport system permease protein GlnP	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene763	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0764
AHA_0765	AHA_0765		AHA_0765	817947	818612	-	glutamine/glutamate ABC transporter%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene764	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0765
AHA_0766	AHA_0766		AHA_0766	818609	819820	-	threonine synthase	identified by match to protein family HMM PF00291	gene	gene765	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0766
AHA_0767	AHA_0767		AHA_0767	820056	822203	+	prolyl endopeptidase	identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897	gene	gene766	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0767
AHA_0768	AHA_0768		AHA_0768	822407	824566	+	AsmA protein	identified by match to protein family HMM PF05170	gene	gene767	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0768
AHA_0769	AHA_0769		AHA_0769	824742	825278	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene768	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0769
AHA_0770	AHA_0770		AHA_0770	825334	826068	+	3-oxoacyl-[acyl-carrier-protein] reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370	gene	gene769	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0770
AHA_0771	AHA_0771		AHA_0771	826119	829052	-	glutamate-ammonia ligase adenylyltransferase	identified by similarity to SP:P30870%3B match to protein family HMM PF03710	gene	gene770	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0771
AHA_0772	AHA_0772		AHA_0772	829124	829564	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene771	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0772
AHA_0773	AHA_0773		AHA_0773	829745	830995	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene772	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0773
AHA_0774	AHA_0774		AHA_0774	831027	831848	+	ion transporter%2C putative	identified by match to protein family HMM PF00520%3B match to protein family HMM PF07885	gene	gene773	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0774
AHA_0775	AHA_0775		AHA_0775	832001	832606	+	arylsulfatase	identified by match to protein family HMM PF06347	gene	gene774	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0775
AHA_0776	AHA_0776		AHA_0776	832876	836040	+	bifunctional PutA protein: proline dehydrogenase/delta-1-pyrroline-5-carboxylate dehydrogenase	identified by match to protein family HMM PF00171%3B match to protein family HMM PF01619%3B match to protein family HMM TIGR01238	gene	gene775	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0776
AHA_0777	AHA_0777		AHA_0777	836241	837020	+	hydrolase%2C NUDIX family	identified by match to protein family HMM PF00293	gene	gene776	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0777
AHA_0778	AHA_0778	hemE	hemE	837040	838230	+	uroporphyrinogen decarboxylase	identified by match to protein family HMM PF01208%3B match to protein family HMM TIGR01464	gene	gene777	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0778
AHA_0779	AHA_0779		AHA_0779	838411	839340	+	ROK family protein	identified by match to protein family HMM PF00480	gene	gene778	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0779
AHA_0780	AHA_0780	epd	epd	839390	840400	+	D-erythrose-4-phosphate dehydrogenase	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01532	gene	gene779	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0780
AHA_0781	AHA_0781	pgk	pgk	840463	841626	+	phosphoglycerate kinase	identified by match to protein family HMM PF00162	gene	gene780	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0781
AHA_0782	AHA_0782	fbaA	fbaA	841743	842822	+	fructose-bisphosphate aldolase%2C class II	identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01520	gene	gene781	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0782
AHA_0783	AHA_0783		AHA_0783	843043	844347	+	oxidoreductase	identified by match to protein family HMM PF01266	gene	gene782	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0783
AHA_0784	AHA_0784		AHA_0784	844532	844945	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene783	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0784
AHA_0785	AHA_0785	dsbD	dsbD	845070	846842	-	thiol:disulfide interchange protein DsbD	synonymous name: protein-disulfide reductase DsbD%3B identified by similarity to SP:P36655%3B match to protein family HMM PF02683	gene	gene784	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0785
AHA_0786	AHA_0786	cutA	cutA	846839	847246	-	divalent-cation tolerance protein CutA	identified by match to protein family HMM PF03091	gene	gene785	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0786
AHA_0787	AHA_0787		AHA_0787	847323	847691	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene786	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0787
AHA_0788	AHA_0788		AHA_0788	847787	848224	-	transmembrane pair	identified by match to protein family HMM PF05232	gene	gene787	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0788
AHA_0789	AHA_0789		AHA_0789	848349	849227	+	regulatory protein%2C LysR:LysR%2C substrate-binding	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene788	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0789
AHA_0790	AHA_0790		AHA_0790	849241	850146	-	chain A%2C Ygfz Protein	identified by match to protein family HMM PF01571	gene	gene789	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0790
AHA_0791	AHA_0791		AHA_0791	850260	850529	+	TPR repeat protein	identified by match to protein family HMM PF03937	gene	gene790	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0791
AHA_0792	AHA_0792		AHA_0792	850549	850926	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene791	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0792
AHA_0793	AHA_0793	nadB	nadB	851151	852758	-	L-aspartate oxidase	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR00551	gene	gene792	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0793
AHA_0794	AHA_0794		AHA_0794	852941	853522	+	RNA polymerase sigma-E factor	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02939	gene	gene793	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0794
AHA_0795	AHA_0795	rseA	rseA	853545	854135	+	sigma-E factor negative regulatory protein	identified by similarity to SP:P38106%3B match to protein family HMM PF03872%3B match to protein family HMM PF03873	gene	gene794	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0795
AHA_0796	AHA_0796	rseB	rseB	854071	855135	+	sigma-E factor regulatory protein RseB	identified by similarity to SP:P46186%3B match to protein family HMM PF03888	gene	gene795	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0796
AHA_0797	AHA_0797	rseC	rseC	855229	855690	+	sigma-E factor regulatory protein RseC	identified by similarity to SP:P46187%3B match to protein family HMM PF04246	gene	gene796	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0797
AHA_0798	AHA_0798	lepA	lepA	855811	857604	+	GTP-binding protein LepA	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF06421%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR01393	gene	gene797	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0798
AHA_0799	AHA_0799	lepB	lepB	857608	858531	+	signal peptidase I	identified by similarity to SP:P00803%3B match to protein family HMM PF00717%3B match to protein family HMM TIGR02227	gene	gene798	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0799
AHA_0800	AHA_0800	rnc	rnc	858532	859203	+	ribonuclease III	identified by match to protein family HMM PF00035%3B match to protein family HMM PF00636%3B match to protein family HMM TIGR02191	gene	gene799	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0800
AHA_0801	AHA_0801	era	era	859200	860099	+	GTP-binding protein Era	identified by match to protein family HMM PF01926%3B match to protein family HMM PF07650%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00436%3B match to protein family HMM TIGR00650	gene	gene800	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0801
AHA_0802	AHA_0802	recO	recO	860100	860807	+	DNA repair protein RecO	identified by match to protein family HMM PF02565%3B match to protein family HMM TIGR00613	gene	gene801	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0802
AHA_0803	AHA_0803	pdxJ	pdxJ	860970	861707	+	pyridoxal phosphate biosynthetic protein PdxJ	identified by match to protein family HMM PF03740%3B match to protein family HMM TIGR00559	gene	gene802	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0803
AHA_0804	AHA_0804		AHA_0804	861793	863703	-	enterotoxin		gene	gene803	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0804
AHA_0805	AHA_0805		AHA_0805	863806	864660	-	class II aldolase%2C tagatose bisphosphate family	identified by match to protein family HMM PF01116%3B match to protein family HMM TIGR00167%3B match to protein family HMM TIGR01858	gene	gene804	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0805
AHA_0806	AHA_0806	nagA-1	nagA-1	864651	865850	-	N-acetylglucosamine-6-phosphate deacetylase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00221	gene	gene805	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0806
AHA_0807	AHA_0807		AHA_0807	865851	866348	-	N-acetyl-galactosamine	identified by match to protein family HMM PF03610	gene	gene806	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0807
AHA_0808	AHA_0808		AHA_0808	866332	867210	-	N-acetylgalactosamine permease IID component	identified by match to protein family HMM PF03613	gene	gene807	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0808
AHA_0809	AHA_0809		AHA_0809	867200	867976	-	N-acetylgalactosamine permease IIC component 1	identified by match to protein family HMM PF03609	gene	gene808	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0809
AHA_0810	AHA_0810		AHA_0810	867992	868465	-	N-acetylgalactosamine-specific phosphotransferase enzyme IIB component2	identified by match to protein family HMM PF03830%3B match to protein family HMM TIGR00854	gene	gene809	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0810
AHA_0811	AHA_0811		AHA_0811	868465	869634	-	putative tagatose-6-phosphate ketose/aldose isomerase	identified by match to protein family HMM PF01380%3B match to protein family HMM TIGR02815	gene	gene810	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0811
AHA_0812	AHA_0812		AHA_0812	869647	870960	-	D-tagatose-bisphosphate aldolase%2C class II%2C non-catalytic subunit	identified by match to protein family HMM PF08013%3B match to protein family HMM TIGR02810	gene	gene811	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0812
AHA_0813	AHA_0813		AHA_0813	871233	872030	+	glucitol operon repressor	identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220	gene	gene812	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0813
AHA_0814	AHA_0814		AHA_0814	872100	873020	-	putative N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01471%3B match to protein family HMM PF01510	gene	gene813	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0814
AHA_0815	AHA_0815		AHA_0815	873024	873503	-	conserved hypothetical protein	identified by match to protein family HMM PF07308	gene	gene814	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0815
AHA_0816	AHA_0816		AHA_0816	873576	876287	-	sensor protein BarA	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518	gene	gene815	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0816
AHA_0817	AHA_0817	rumA-1	rumA-1	876441	877763	+	23S rRNA (uracil-5-)-methyltransferase RumA	identified by match to protein family HMM PF01938%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479	gene	gene816	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0817
AHA_0818	AHA_0818		AHA_0818	878030	880240	+	GTP pyrophosphokinase (ATP:GTP 3'-pyrophosphotransferase)(ppGpp synthetase I) ((p)ppGpp synthetase)	identified by match to protein family HMM PF01842%3B match to protein family HMM PF02824%3B match to protein family HMM PF04607%3B match to protein family HMM TIGR00691	gene	gene817	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0818
AHA_0819	AHA_0819		AHA_0819	880325	881122	+	MazG family protein	identified by match to protein family HMM PF03819%3B match to protein family HMM TIGR00444	gene	gene818	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0819
AHA_0820	AHA_0820	pyrG	pyrG	881264	882901	+	CTP synthase	identified by match to protein family HMM PF00117%3B match to protein family HMM PF06418%3B match to protein family HMM TIGR00337	gene	gene819	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0820
AHA_0821	AHA_0821	eno	eno	882991	884292	+	phosphopyruvate hydratase	identified by match to protein family HMM PF00113%3B match to protein family HMM PF03952%3B match to protein family HMM TIGR01060	gene	gene820	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0821
AHA_0822	AHA_0822		AHA_0822	884471	884788	+	cell division protein	identified by similarity to SP:P0A6S5%3B match to protein family HMM PF04977	gene	gene821	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0822
AHA_0823	AHA_0823	ispD	ispD	884781	885512	+	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	identified by match to protein family HMM PF01128%3B match to protein family HMM TIGR00453	gene	gene822	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0823
AHA_0824	AHA_0824	ispF	ispF	885509	885985	+	2C-methyl-D-erythritol 2%2C4-cyclodiphosphate synthase	identified by match to protein family HMM PF02542%3B match to protein family HMM TIGR00151	gene	gene823	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0824
AHA_0825	AHA_0825	truD	truD	885985	887043	+	tRNA pseudouridine synthase D	identified by match to protein family HMM PF01142%3B match to protein family HMM TIGR00094	gene	gene824	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0825
AHA_0826	AHA_0826	surE	surE	887024	887785	+	acid phosphatase SurE	identified by similarity to SP:P0A840%3B match to protein family HMM PF01975%3B match to protein family HMM TIGR00087	gene	gene825	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0826
AHA_0827	AHA_0827	pcm	pcm	887790	888407	+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	identified by match to protein family HMM PF01135%3B match to protein family HMM TIGR00080	gene	gene826	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0827
AHA_0828	AHA_0828		AHA_0828	888410	888985	+	putative membrane protein		gene	gene827	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0828
AHA_0829	AHA_0829	nlpD	nlpD	888924	890036	+	lipoprotein NlpD	identified by match to protein family HMM PF01476%3B match to protein family HMM PF01551	gene	gene828	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0829
AHA_0830	AHA_0830	rpoS	rpoS	890084	891067	+	RNA polymerase sigma factor RpoS	identified by match to protein family HMM PF00140%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02394%3B match to protein family HMM TIGR02937%3B match to protein family HMM TIGR02942	gene	gene829	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0830
AHA_0831	AHA_0831	gcp	gcp	891152	892165	-	O-sialoglycoprotein endopeptidase	identified by similarity to SP:P36175%3B match to protein family HMM PF00814%3B match to protein family HMM TIGR00329	gene	gene830	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0831
AHA_0832	AHA_0832	rpsU	rpsU	892345	892560	+	ribosomal protein S21	identified by match to protein family HMM PF01165%3B match to protein family HMM TIGR00030	gene	gene831	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0832
AHA_0833	AHA_0833		AHA_0833	892575	893018	+	GatB/YqeY domain protein	identified by match to protein family HMM PF02637	gene	gene832	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0833
AHA_0834	AHA_0834	dnaG	dnaG	893107	894894	+	DNA primase	identified by match to protein family HMM PF01751%3B match to protein family HMM PF01807%3B match to protein family HMM TIGR01391	gene	gene833	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0834
AHA_0835	AHA_0835		AHA_0835	895117	896973	+	RNA polymerase sigma factor RpoD	identified by match to protein family HMM PF00140%3B match to protein family HMM PF03979%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM PF04546%3B match to protein family HMM TIGR02393%3B match to protein family HMM TIGR02937	gene	gene834	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0835
AHA_0836	AHA_0836		AHA_0836	897169	897245	+	tRNA-Met		tRNA	gene835	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0836
AHA_0837	AHA_0837		AHA_0837	897701	900277	-	alpha-amylase	identified by similarity to SP:P41131%3B match to protein family HMM PF00128%3B match to protein family HMM PF00801%3B match to protein family HMM PF02806	gene	gene836	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0837
AHA_0838	AHA_0838		AHA_0838	900553	901107	-	cytochrome B	identified by match to protein family HMM PF01292	gene	gene837	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0838
AHA_0839	AHA_0839		AHA_0839	901088	901462	-	conserved hypothetical protein		gene	gene838	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0839
AHA_0840	AHA_0840	purD	purD	901727	903016	-	phosphoribosylamine--glycine ligase	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02655%3B match to protein family HMM PF02843%3B match to protein family HMM PF02844%3B match to protein family HMM TIGR00877	gene	gene839	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0840
AHA_0841	AHA_0841	purH	purH	903127	904719	-	bifunctional purine biosynthesis protein PurH	identified by match to protein family HMM PF01808%3B match to protein family HMM PF02142%3B match to protein family HMM TIGR00355	gene	gene840	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0841
AHA_0842	AHA_0842	zntR	zntR	905131	905568	+	Zn(II)-responsive transcriptional regulator	identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR02043	gene	gene841	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0842
AHA_0843	AHA_0843		AHA_0843	905558	906094	+	riboflavin biosynthesis protein RibD C-terminal domain protein	identified by match to protein family HMM PF01872	gene	gene842	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0843
AHA_0844	AHA_0844		AHA_0844	906075	906440	+	conserved hypothetical protein%2C putative	identified by match to protein family HMM PF03889	gene	gene843	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0844
AHA_0845	AHA_0845		AHA_0845	906557	907702	-	putative oxygen-independent coproporphyrinogen III oxidase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06969%3B match to protein family HMM TIGR00539	gene	gene844	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0845
AHA_0846	AHA_0846	rdgB	rdgB	907837	908433	-	non-canonical purine NTP pyrophosphatase%2C RdgB/HAM1 family	identified by match to protein family HMM PF01725%3B match to protein family HMM TIGR00042	gene	gene845	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0846
AHA_0847	AHA_0847		AHA_0847	908662	909819	+	chloramphenicol resistance protein	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710	gene	gene846	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0847
AHA_0848	AHA_0848		AHA_0848	909928	910977	+	oxidoreductase%2C NAD-binding	identified by match to protein family HMM PF01118%3B match to protein family HMM PF01408%3B match to protein family HMM PF02894	gene	gene847	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0848
AHA_0849	AHA_0849		AHA_0849	911635	912186	-	ribosomal-protein-alanine acetyltransferase	identified by match to protein family HMM PF00583	gene	gene848	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0849
AHA_0850	AHA_0850		AHA_0850	912186	912740	-	ribosomal-protein-serine acetyltransferase	identified by match to protein family HMM PF00583	gene	gene849	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0850
AHA_0851	AHA_0851		AHA_0851	913092	914861	+	elastase	identified by similarity to GB:AAF07184.1%3B match to protein family HMM PF01447%3B match to protein family HMM PF02868%3B match to protein family HMM PF03413%3B match to protein family HMM PF04151%3B match to protein family HMM PF07504	gene	gene850	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0851
AHA_0852	AHA_0852		AHA_0852	914913	915806	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene851	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0852
AHA_0853	AHA_0853		AHA_0853	916021	917214	+	multidrug resistance protein MdtH	identified by match to protein family HMM PF07690	gene	gene852	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0853
AHA_0854	AHA_0854		AHA_0854	917279	918352	-	outer membrane porin protein	identified by match to protein family HMM PF00267	gene	gene853	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0854
AHA_0855	AHA_0855		AHA_0855	918553	919872	-	anaerobic C4-dicarboxylate transporter DcuA	identified by match to protein family HMM PF03605%3B match to protein family HMM TIGR00770	gene	gene854	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0855
AHA_0856	AHA_0856	aspA	aspA	920000	921442	-	aspartate ammonia-lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00839	gene	gene855	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0856
AHA_0857	AHA_0857		AHA_0857	921814	922368	+	protein FxsA	identified by match to protein family HMM PF04186	gene	gene856	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0857
AHA_0858	AHA_0858		AHA_0858	922392	923792	-	Na(+) driven multidrug efflux pump	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene857	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0858
AHA_0859	AHA_0859	groS	groS	923975	924268	+	chaperonin GroS	identified by match to protein family HMM PF00166	gene	gene858	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0859
AHA_0860	AHA_0860	groL	groL	924310	925944	+	chaperonin GroEL	identified by similarity to SP:P0A6F5%3B match to protein family HMM PF00118%3B match to protein family HMM TIGR02348	gene	gene859	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0860
AHA_0861	AHA_0861		AHA_0861	926082	926537	+	oxidoreductase molybdopterin binding domain%2C putative	identified by match to protein family HMM PF00174	gene	gene860	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0861
AHA_0862	AHA_0862		AHA_0862	926561	928492	+	PAS:GGDEF domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene861	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0862
AHA_0863	AHA_0863		AHA_0863	928813	929469	-	ribosomal large subunit pseudouridine synthase A	identified by match to protein family HMM PF00849	gene	gene862	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0863
AHA_0864	AHA_0864		AHA_0864	929579	932446	-	RNA polymerase associated protein RapA	identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271	gene	gene863	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0864
AHA_0865	AHA_0865	rrsF	rrsF	933026	934562	+	16S ribosomal RNA		rRNA	gene864	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0865
AHA_0866	AHA_0866		AHA_0866	934767	934842	+	tRNA-Glu		tRNA	gene865	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0866
AHA_0867	AHA_0867	rrlF	rrlF	935073	937968	+	23S ribosomal RNA		rRNA	gene866	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0867
AHA_0868	AHA_0868	rrfF	rrfF	938084	938201	+	5S ribosomal RNA		rRNA	gene867	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0868
AHA_0869	AHA_0869		AHA_0869	938489	938941	+	putative pullulanase		gene	gene868	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0869
AHA_0870	AHA_0870		AHA_0870	939149	941296	+	ribonucleoside-diphosphate reductase%2C adenosylcobalamin-dependent	identified by match to protein family HMM PF02867%3B match to protein family HMM TIGR02504	gene	gene869	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0870
AHA_0871	AHA_0871		AHA_0871	941307	941987	+	ribonucleotide reductase system		gene	gene870	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0871
AHA_0872	AHA_0872		AHA_0872	942196	943566	+	PhoH family protein	identified by match to protein family HMM PF02562	gene	gene871	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0872
AHA_0873	AHA_0873		AHA_0873	943634	943744	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene872	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0873
AHA_0874	AHA_0874	thiQ	thiQ	943804	944511	-	thiamine ABC transporter%2C ATP-binding protein	identified by similarity to SP:P31548%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01277	gene	gene873	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0874
AHA_0875	AHA_0875	thiP	thiP	944577	946199	-	thiamine/thiamine pyrophosphate ABC transporter%2C permease protein	identified by similarity to SP:P31549%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01253	gene	gene874	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0875
AHA_0876	AHA_0876	thiB	thiB	946196	947176	-	thiamin/thiamin pyrophosphate ABC transporter%2C periplasmic thiamin/thiamin pyrophospate-binding protein	identified by similarity to SP:P31550%3B match to protein family HMM PF01547%3B match to protein family HMM TIGR01254%3B match to protein family HMM TIGR01276	gene	gene875	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0876
AHA_0877	AHA_0877		AHA_0877	947341	947700	+	type IV pilus assembly protein PilZ	identified by match to protein family HMM PF07238	gene	gene876	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0877
AHA_0878	AHA_0878		AHA_0878	947803	948729	-	conserved hypothetical protein		gene	gene877	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0878
AHA_0879	AHA_0879	leuD	leuD	948846	949445	-	3-isopropylmalate dehydratase%2C small subunit	identified by match to protein family HMM PF00694%3B match to protein family HMM TIGR00171	gene	gene878	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0879
AHA_0880	AHA_0880	leuC	leuC	949458	950855	-	3-isopropylmalate dehydratase%2C large subunit	identified by match to protein family HMM PF00330%3B match to protein family HMM TIGR00170	gene	gene879	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0880
AHA_0881	AHA_0881	leuB	leuB	950888	951973	-	3-isopropylmalate dehydrogenase	identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00169	gene	gene880	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0881
AHA_0882	AHA_0882	leuA-1	leuA-1	951976	953550	-	2-isopropylmalate synthase	identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00973	gene	gene881	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0882
AHA_0883	AHA_0883		AHA_0883	953958	954581	+	transcriptional regulator%2C TetR family protein	identified by match to protein family HMM PF00440	gene	gene882	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0883
AHA_0884	AHA_0884		AHA_0884	954707	955207	+	PAP2 family protein	identified by match to protein family HMM PF01569	gene	gene883	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0884
AHA_0885	AHA_0885		AHA_0885	955207	956316	+	glycosyl transferase	identified by match to protein family HMM TIGR00661	gene	gene884	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0885
AHA_0886	AHA_0886		AHA_0886	956353	956505	+	conserved hypothetical protein		gene	gene885	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0886
AHA_0887	AHA_0887	ilvB-1	ilvB-1	956895	958613	+	acetolactate synthase%2C large subunit%2C biosynthetic type	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118	gene	gene886	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0887
AHA_0888	AHA_0888		AHA_0888	958586	958708	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene887	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0888
AHA_0889	AHA_0889	ilvN	ilvN	958705	959199	+	acetolactate synthase%2C small subunit	identified by match to protein family HMM PF01842%3B match to protein family HMM TIGR00119	gene	gene888	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0889
AHA_0890	AHA_0890		AHA_0890	959593	961746	-	phosphate acetyltransferase	identified by match to protein family HMM PF01515%3B match to protein family HMM PF07085%3B match to protein family HMM TIGR00651	gene	gene889	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0890
AHA_0891	AHA_0891	ackA-1	ackA-1	961816	963018	-	acetate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016	gene	gene890	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0891
AHA_0892	AHA_0892		AHA_0892	963321	963761	+	conserved hypothetical protein	identified by match to protein family HMM PF04217	gene	gene891	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0892
AHA_0893	AHA_0893		AHA_0893	963817	964317	-	YfbU domain protein	identified by match to protein family HMM PF03887	gene	gene892	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0893
AHA_0894	AHA_0894		AHA_0894	964732	965196	-	putative peroxiredoxin bcp	identified by match to protein family HMM PF00578	gene	gene893	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0894
AHA_0895	AHA_0895		AHA_0895	965218	966036	-	glycine cleavage system transcriptional repressor		gene	gene894	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0895
AHA_0896	AHA_0896	dapA-1	dapA-1	966035	966922	+	dihydrodipicolinate synthase	identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674	gene	gene895	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0896
AHA_0897	AHA_0897		AHA_0897	966915	968039	+	NlpB/DapX lipoprotein	identified by match to protein family HMM PF06804	gene	gene896	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0897
AHA_0898	AHA_0898	purC	purC	968093	969208	+	phosphoribosylaminoimidazole-succinocarboxamide synthase	identified by match to protein family HMM PF01259%3B match to protein family HMM TIGR02735	gene	gene897	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0898
AHA_0899	AHA_0899		AHA_0899	969340	969942	-	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene898	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0899
AHA_0900	AHA_0900		AHA_0900	970041	970940	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene899	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0900
AHA_0901	AHA_0901		AHA_0901	971067	971654	+	conserved hypothetical protein		gene	gene900	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0901
AHA_0902	AHA_0902		AHA_0902	971727	972164	+	HIT family hydrolase	identified by match to protein family HMM PF01230	gene	gene901	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0902
AHA_0903	AHA_0903		AHA_0903	972263	972961	+	conserved hypothetical protein		gene	gene902	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0903
AHA_0904	AHA_0904		AHA_0904	973032	974030	-	conserved hypothetical protein		gene	gene903	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0904
AHA_0905	AHA_0905		AHA_0905	974238	976550	+	sensor histidine kinase/response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene904	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0905
AHA_0906	AHA_0906		AHA_0906	976579	977934	+	deoxyguanosinetriphosphate triphosphohydrolase	identified by match to protein family HMM TIGR01353	gene	gene905	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0906
AHA_0907	AHA_0907		AHA_0907	978257	978460	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene906	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0907
AHA_0908	AHA_0908		AHA_0908	978610	982887	+	virulence sensor protein BvgS%2C putative	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene907	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0908
AHA_0909	AHA_0909		AHA_0909	982892	984079	+	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00563	gene	gene908	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0909
AHA_0910	AHA_0910		AHA_0910	984118	986094	+	putative chemotaxis transducer	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene909	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0910
AHA_0911	AHA_0911		AHA_0911	986214	986318	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene910	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0911
AHA_0912	AHA_0912	rfaH	rfaH	986320	986871	-	transcriptional activator RfaH	identified by match to protein family HMM PF02357%3B match to protein family HMM TIGR01955	gene	gene911	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0912
AHA_0913	AHA_0913	metQ	metQ	986917	987717	-	D-methionine ABC transporter%2C periplasmic D-methionine-binding lipoprotein	identified by similarity to SP:P28635%3B match to protein family HMM PF03180%3B match to protein family HMM TIGR00363	gene	gene912	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0913
AHA_0914	AHA_0914	metI	metI	987743	988396	-	D-methionine ABC transporter%2C permease protein	identified by similarity to SP:P31547%3B match to protein family HMM PF00528	gene	gene913	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0914
AHA_0915	AHA_0915	metN	metN	988377	989420	-	D-methionine ABC transporter%2C ATP-binding protein	identified by similarity to SP:P30750%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02314	gene	gene914	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0915
AHA_0916	AHA_0916		AHA_0916	989577	990347	+	conserved hypothetical protein		gene	gene915	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0916
AHA_0917	AHA_0917		AHA_0917	990456	991214	-	polyphosphate glucokinase	identified by match to protein family HMM PF00480	gene	gene916	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0917
AHA_0918	AHA_0918		AHA_0918	991298	992539	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00276	gene	gene917	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0918
AHA_0919	AHA_0919		AHA_0919	992600	994111	+	YjeF protein	identified by match to protein family HMM PF01256%3B match to protein family HMM PF03853%3B match to protein family HMM TIGR00196%3B match to protein family HMM TIGR00197	gene	gene918	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0919
AHA_0920	AHA_0920		AHA_0920	994120	994593	+	conserved hypothetical protein	identified by match to protein family HMM PF02367%3B match to protein family HMM TIGR00150	gene	gene919	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0920
AHA_0921	AHA_0921		AHA_0921	994584	996149	+	N-acetylmuramoyl-L-alanine amidase	identified by match to protein family HMM PF01476%3B match to protein family HMM PF01520	gene	gene920	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0921
AHA_0922	AHA_0922	mutL	mutL	996379	998247	+	DNA mismatch repair protein MutL	identified by match to protein family HMM PF01119%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00585	gene	gene921	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0922
AHA_0923	AHA_0923	miaA	miaA	998340	999257	+	tRNA delta(2)-isopentenylpyrophosphate transferase	identified by match to protein family HMM PF01715%3B match to protein family HMM TIGR00174	gene	gene922	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0923
AHA_0924	AHA_0924	hfq	hfq	999328	999591	+	RNA chaperone Hfq	identified by similarity to SP:P0A6X3%3B match to protein family HMM PF01423%3B match to protein family HMM TIGR02383	gene	gene923	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0924
AHA_0925	AHA_0925		AHA_0925	999655	1000941	+	GTP-binding protein HflX	identified by match to protein family HMM PF01926	gene	gene924	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0925
AHA_0926	AHA_0926	hflK	hflK	1001033	1002184	+	HflK protein	identified by similarity to SP:P25662%3B match to protein family HMM PF01145%3B match to protein family HMM TIGR01933	gene	gene925	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0926
AHA_0927	AHA_0927	hflC	hflC	1002188	1003072	+	HflC protein	identified by match to protein family HMM PF01145%3B match to protein family HMM TIGR01932	gene	gene926	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0927
AHA_0928	AHA_0928		AHA_0928	1003184	1003372	+	conserved hypothetical protein		gene	gene927	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0928
AHA_0929	AHA_0929		AHA_0929	1003460	1004431	-	octaprenyl-diphosphate synthase	identified by match to protein family HMM PF00348	gene	gene928	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0929
AHA_0930	AHA_0930	rplU	rplU	1004674	1004985	+	ribosomal protein L21	identified by match to protein family HMM PF00829%3B match to protein family HMM TIGR00061	gene	gene929	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0930
AHA_0931	AHA_0931	rpmA	rpmA	1005003	1005260	+	ribosomal protein L27	identified by match to protein family HMM PF01016%3B match to protein family HMM TIGR00062	gene	gene930	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0931
AHA_0932	AHA_0932		AHA_0932	1005451	1006653	+	GTP-binding protein Obg/CgtA	identified by match to protein family HMM PF01018%3B match to protein family HMM PF01926%3B match to protein family HMM TIGR02729	gene	gene931	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0932
AHA_0933	AHA_0933		AHA_0933	1007048	1008418	+	membrane protein	identified by match to protein family HMM PF07670	gene	gene932	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0933
AHA_0934	AHA_0934		AHA_0934	1008590	1010284	+		AMP-binding family protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00501	pseudogene	gene933	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0934
AHA_0935	AHA_0935		AHA_0935	1010327	1010680	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene934	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0935
AHA_0936	AHA_0936		AHA_0936	1010757	1011107	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene935	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0936
AHA_0937	AHA_0937		AHA_0937	1011240	1014212	-	chemotaxis sensory transducer family protein	identified by match to protein family HMM PF00672	gene	gene936	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0937
AHA_0938	AHA_0938		AHA_0938	1014368	1015357	+	flavin dependant oxidoreductase	identified by match to protein family HMM PF00296	gene	gene937	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0938
AHA_0939	AHA_0939		AHA_0939	1015593	1016093	+	helix-turn-helix domain protein	identified by match to protein family HMM PF01381	gene	gene938	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0939
AHA_0940	AHA_0940		AHA_0940	1016259	1017080	-	bis(5'-nucleosyl)-tetraphosphatase (symmetrical)	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00668	gene	gene939	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0940
AHA_0941	AHA_0941		AHA_0941	1017087	1017449	-	protein ApaG	identified by match to protein family HMM PF04379	gene	gene940	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0941
AHA_0942	AHA_0942	ksgA	ksgA	1017454	1018269	-	dimethyladenosine transferase	identified by match to protein family HMM PF00398%3B match to protein family HMM TIGR00755	gene	gene941	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0942
AHA_0943	AHA_0943	pdxA	pdxA	1018271	1019266	-	4-hydroxythreonine-4-phosphate dehydrogenase	identified by match to protein family HMM PF04166%3B match to protein family HMM TIGR00557	gene	gene942	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0943
AHA_0944	AHA_0944	surA	surA	1019266	1020564	-	peptidylprolyl cis-trans isomerase SurA	identified by similarity to SP:P21202%3B match to protein family HMM PF00639	gene	gene943	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0944
AHA_0945	AHA_0945		AHA_0945	1020595	1023027	-	organic solvent tolerance protein	identified by match to protein family HMM PF03968%3B match to protein family HMM PF04453	gene	gene944	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0945
AHA_0946	AHA_0946		AHA_0946	1023202	1024212	+	aminoglycoside phosphotransferase	identified by match to protein family HMM PF01636	gene	gene945	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0946
AHA_0947	AHA_0947		AHA_0947	1024209	1024877	+	nucleotidyltransferase family protein	identified by match to protein family HMM PF00483	gene	gene946	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0947
AHA_0948	AHA_0948	djlA	djlA	1024897	1025727	+	co-chaperone DjlA	identified by similarity to SP:P31680%3B match to protein family HMM PF00226	gene	gene947	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0948
AHA_0949	AHA_0949		AHA_0949	1025804	1027147	-	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916	gene	gene948	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0949
AHA_0950	AHA_0950		AHA_0950	1027911	1029578	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene949	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0950
AHA_0951	AHA_0951		AHA_0951	1029819	1030394	+	transcription regulator%2C Crp family	identified by match to protein family HMM PF00027	gene	gene950	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0951
AHA_0952	AHA_0952		AHA_0952	1030455	1030961	+	conserved hypothetical protein		gene	gene951	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0952
AHA_0953	AHA_0953	mtnN-1	mtnN-1	1031052	1031825	-	MTA/SAH nucleosidase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704	gene	gene952	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0953
AHA_0954	AHA_0954		AHA_0954	1031997	1032851	-	lytic transglycosylase%2C catalytic	identified by match to protein family HMM PF01464	gene	gene953	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0954
AHA_0955	AHA_0955		AHA_0955	1033036	1033377	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene954	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0955
AHA_0956	AHA_0956		AHA_0956	1033429	1033617	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene955	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0956
AHA_0957	AHA_0957		AHA_0957	1033815	1034753	-	HTH-type transcriptional regulator XapR	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene956	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0957
AHA_0958	AHA_0958	xapA	xapA	1035084	1035911	+	xanthosine phosphorylase	identified by match to protein family HMM PF00896%3B match to protein family HMM TIGR01697%3B match to protein family HMM TIGR01699	gene	gene957	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0958
AHA_0959	AHA_0959		AHA_0959	1035937	1037196	+	nucleoside permease	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804	gene	gene958	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0959
AHA_0960	AHA_0960	deoC-1	deoC-1	1037259	1038062	+	deoxyribose-phosphate aldolase	identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126	gene	gene959	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0960
AHA_0961	AHA_0961		AHA_0961	1038119	1039030	+	putative membrane protein	identified by match to protein family HMM PF00892	gene	gene960	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0961
AHA_0962	AHA_0962		AHA_0962	1039036	1040049	-	putative nucleotide sugar epimerase	identified by similarity to GB:AAD50494.1%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene961	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0962
AHA_0963	AHA_0963		AHA_0963	1040372	1040998	+	conserved hypothetical protein	identified by match to protein family HMM PF02588	gene	gene962	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0963
AHA_0964	AHA_0964	hutD	hutD	1041104	1041892	-	hemin ABC transporter%2C ATP-binding protein HutD	identified by match to protein family HMM PF00005	gene	gene963	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0964
AHA_0965	AHA_0965		AHA_0965	1041907	1042935	-	ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene964	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0965
AHA_0966	AHA_0966		AHA_0966	1042935	1043774	-	ABC-type hemin transport system%2C periplasmic component	identified by match to protein family HMM PF01497	gene	gene965	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0966
AHA_0967	AHA_0967		AHA_0967	1043943	1044455	+	HuvX protein	identified by match to protein family HMM PF06228	gene	gene966	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0967
AHA_0968	AHA_0968		AHA_0968	1044452	1045009	+	HutZ protein	identified by match to protein family HMM PF01243	gene	gene967	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0968
AHA_0969	AHA_0969		AHA_0969	1045080	1045484	-	lipoprotein%2C putative		gene	gene968	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0969
AHA_0970	AHA_0970		AHA_0970	1045524	1046075	-	isochorismatase family protein	identified by match to protein family HMM PF00857	gene	gene969	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0970
AHA_0971	AHA_0971		AHA_0971	1046136	1047104	-	hypothetical iron-regulated protein	identified by match to protein family HMM PF04187	gene	gene970	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0971
AHA_0972	AHA_0972	hgpB	hgpB	1047293	1049386	+	putative outer-membrane heme receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786	gene	gene971	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0972
AHA_0973	AHA_0973	hcaT	hcaT	1049675	1050814	+	MFS transporter%2C phenyl propionate permease (PPP) family	identified by match to protein family HMM PF01306%3B match to protein family HMM PF07690	gene	gene972	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0973
AHA_0974	AHA_0974		AHA_0974	1050899	1051108	-	conserved domain protein	identified by match to protein family HMM PF01381	gene	gene973	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0974
AHA_0975	AHA_0975		AHA_0975	1051116	1051727	-	conserved hypothetical protein		gene	gene974	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0975
AHA_0976	AHA_0976		AHA_0976	1051947	1055447	+	proline sensor PrlS	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene975	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0976
AHA_0977	AHA_0977		AHA_0977	1055820	1058429	+	chitinase A	identified by match to protein family HMM PF00704%3B match to protein family HMM PF00801%3B match to protein family HMM PF02839	gene	gene976	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0977
AHA_0978	AHA_0978		AHA_0978	1058502	1060880	+	putative metalloprotease		gene	gene977	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0978
AHA_0979	AHA_0979		AHA_0979	1060787	1062886	+	basic endochitinase	identified by match to protein family HMM PF00182%3B match to protein family HMM PF00801%3B match to protein family HMM PF02839	gene	gene978	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0979
AHA_0980	AHA_0980		AHA_0980	1062945	1063745	-	ribosomal RNA large subunit methyltransferase A%2C putative		gene	gene979	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0980
AHA_0981	AHA_0981	crp	crp	1063871	1064509	-	catabolite gene activator	identified by similarity to SP:P03020%3B match to protein family HMM PF00027%3B match to protein family HMM PF00325	gene	gene980	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0981
AHA_0982	AHA_0982		AHA_0982	1064626	1065225	+	chain A%2C Structural Genomics	identified by match to protein family HMM PF02566	gene	gene981	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0982
AHA_0983	AHA_0983		AHA_0983	1065275	1065571	+	conserved hypothetical protein		gene	gene982	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0983
AHA_0984	AHA_0984		AHA_0984	1065629	1066159	-	putative lipoprotein		gene	gene983	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0984
AHA_0985	AHA_0985		AHA_0985	1066175	1067044	-	phosphoribulokinase%2C plasmid	identified by match to protein family HMM PF00485	gene	gene984	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0985
AHA_0986	AHA_0986		AHA_0986	1067220	1067663	-	conserved hypothetical protein		gene	gene985	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0986
AHA_0987	AHA_0987		AHA_0987	1067660	1068004	-	conserved hypothetical protein		gene	gene986	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0987
AHA_0988	AHA_0988		AHA_0988	1068004	1069647	-	undecaprenyl phosphate-alpha-4-amino-4-deoxy-L-arabinose arabinosyl transferase	identified by match to protein family HMM PF02366	gene	gene987	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0988
AHA_0989	AHA_0989		AHA_0989	1069717	1070616	-	polysaccharide deacetylase family protein	identified by match to protein family HMM PF01522	gene	gene988	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0989
AHA_0990	AHA_0990		AHA_0990	1070609	1072600	-	bifunctional polymyxin resistance ArnA protein (Polymyxin resistanceprotein pmrI)	identified by match to protein family HMM PF00551%3B match to protein family HMM PF01370%3B match to protein family HMM PF02911	gene	gene989	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0990
AHA_0991	AHA_0991		AHA_0991	1072597	1073577	-	undecaprenyl-phosphate 4-deoxy-4-formamido-L-arabinose transferase	identified by match to protein family HMM PF00535	gene	gene990	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0991
AHA_0992	AHA_0992		AHA_0992	1073584	1074720	-	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase	identified by similarity to SP:P77690%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212	gene	gene991	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0992
AHA_0993	AHA_0993		AHA_0993	1074941	1076287	+	UDP-glucose dehydrogenase	identified by match to protein family HMM PF00984%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene992	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0993
AHA_0994	AHA_0994		AHA_0994	1076717	1076959	-	enolase	identified by match to protein family HMM PF06794	gene	gene993	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0994
AHA_0995	AHA_0995		AHA_0995	1078185	1079267	-	alpha/beta hydrolase	identified by match to protein family HMM PF00561	gene	gene995	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0995
AHA_0996	AHA_0996		AHA_0996	1077049	1078203	+	GGDEF family protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene994	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0996
AHA_0997	AHA_0997		AHA_0997	1079236	1080135	-	chemotaxis protein CheV	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584	gene	gene996	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0997
AHA_0998	AHA_0998		AHA_0998	1080317	1080865	-	conserved hypothetical protein		gene	gene997	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0998
AHA_0999	AHA_0999		AHA_0999	1081043	1081249	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02443	gene	gene998	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_0999
AHA_1000	AHA_1000	slyD	slyD	1081396	1082034	+	FKBP-type peptidyl-prolyl cis-trans isomerase SlyD	identified by similarity to SP:P0A9L2%3B match to protein family HMM PF00254	gene	gene999	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1000
AHA_1001	AHA_1001		AHA_1001	1082099	1082314	-	conserved domain protein	identified by match to protein family HMM PF04102	gene	gene1000	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1001
AHA_1002	AHA_1002		AHA_1002	1082329	1083297	-	vegetatible incompatibility protein HET-E-1	identified by match to protein family HMM PF00400	gene	gene1001	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1002
AHA_1003	AHA_1003	fkpA	fkpA	1083417	1084223	+	FKBP-type peptidyl-prolyl cis-trans isomerase FkpA	identified by similarity to SP:P45523%3B match to protein family HMM PF00254%3B match to protein family HMM PF01346	gene	gene1002	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1003
AHA_1004	AHA_1004		AHA_1004	1084375	1085781	+	sigma-54 interaction domain family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene1003	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1004
AHA_1005	AHA_1005		AHA_1005	1085871	1086740	-	tetratricopeptide repeat domain protein	identified by match to protein family HMM PF07719	gene	gene1004	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1005
AHA_1006	AHA_1006		AHA_1006	1086854	1087189	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1005	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1006
AHA_1007	AHA_1007		AHA_1007	1087316	1087657	-	conserved hypothetical protein		gene	gene1006	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1007
AHA_1008	AHA_1008		AHA_1008	1087744	1089582	-	5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase	identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872	gene	gene1007	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1008
AHA_1009	AHA_1009		AHA_1009	1089815	1091356	-	EAL domain protein	identified by match to protein family HMM PF00563	gene	gene1008	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1009
AHA_1010	AHA_1010		AHA_1010	1091535	1092389	-	import inner membrane translocase%2C subunit Tim44	identified by match to protein family HMM PF04280	gene	gene1009	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1010
AHA_1011	AHA_1011		AHA_1011	1092570	1092671	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1010	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1011
AHA_1012	AHA_1012	dnaB	dnaB	1092822	1094216	+	replicative DNA helicase	identified by match to protein family HMM PF00772%3B match to protein family HMM PF03796%3B match to protein family HMM TIGR00665	gene	gene1011	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1012
AHA_1013	AHA_1013		AHA_1013	1094283	1094375	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1012	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1013
AHA_1014	AHA_1014		AHA_1014	1094442	1094534	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1013	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1014
AHA_1015	AHA_1015	alr-1	alr-1	1094685	1095758	+	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene1014	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1015
AHA_1016	AHA_1016		AHA_1016	1095872	1096120	-	putative ferredoxin	identified by match to protein family HMM PF00037	gene	gene1015	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1016
AHA_1017	AHA_1017	yegQ	yegQ	1096122	1097483	-	peptidase%2C U32 family	identified by match to protein family HMM PF01136	gene	gene1016	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1017
AHA_1018	AHA_1018		AHA_1018	1097716	1098453	-	EAL domain%2C putative	identified by match to protein family HMM PF00563	gene	gene1017	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1018
AHA_1019	AHA_1019		AHA_1019	1098706	1099428	+	conserved hypothetical protein		gene	gene1018	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1019
AHA_1020	AHA_1020		AHA_1020	1099458	1099937	+	adhesin major subunit pilin		gene	gene1019	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1020
AHA_1021	AHA_1021		AHA_1021	1100017	1102452	+	conserved hypothetical protein		gene	gene1020	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1021
AHA_1022	AHA_1022		AHA_1022	1102472	1103629	+	conserved hypothetical protein		gene	gene1021	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1022
AHA_1023	AHA_1023		AHA_1023	1103654	1104292	-	DNA-binding response regulator%2C LuxR family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1022	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1023
AHA_1025	AHA_1025		AHA_1025	1104414	1107842	+	response regulator/sensor histidine kinase	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene1023	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1025
AHA_1026	AHA_1026		AHA_1026	1108232	1108316	-	tRNA-Tyr		tRNA	gene1024	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1026
AHA_1027	AHA_1027		AHA_1027	1108348	1108432	-	tRNA-Tyr		tRNA	gene1025	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1027
AHA_1028	AHA_1028		AHA_1028	1108464	1108548	-	tRNA-Tyr		tRNA	gene1026	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1028
AHA_1029	AHA_1029		AHA_1029	1108869	1110116	+	cysteine desulfurase family protein	identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01976	gene	gene1027	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1029
AHA_1030	AHA_1030	cheB-1	cheB-1	1110170	1111231	-	chemotaxis response regulator protein-glutamate methylesterase	identified by similarity to SP:P04042%3B match to protein family HMM PF00072%3B match to protein family HMM PF01339	gene	gene1028	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1030
AHA_1031	AHA_1031		AHA_1031	1111242	1111712	-	putative chemotaxis protein CheD	identified by similarity to GB:AAO54443.1	gene	gene1029	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1031
AHA_1032	AHA_1032	cheR-1	cheR-1	1111723	1112526	-	CheR methyltransferase%2C SAM binding domain protein	identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705	gene	gene1030	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1032
AHA_1033	AHA_1033		AHA_1033	1112583	1114751	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1031	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1033
AHA_1034	AHA_1034	cheW-1	cheW-1	1114822	1115394	-	chemotaxis protein CheW	identified by similarity to GB:AAB53941.1%3B match to protein family HMM PF01584	gene	gene1032	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1034
AHA_1035	AHA_1035		AHA_1035	1115407	1117329	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1033	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1035
AHA_1036	AHA_1036	cheA-1	cheA-1	1117345	1119558	-	chemotaxis protein CheA	identified by similarity to SP:P07363%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895	gene	gene1034	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1036
AHA_1037	AHA_1037	rsbV	rsbV	1119585	1119911	-	anti-sigma-B factor antagonist	identified by similarity to SP:P17903%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00377	gene	gene1035	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1037
AHA_1038	AHA_1038		AHA_1038	1119926	1120294	-	chemotaxis protein CheY	identified by match to protein family HMM PF00072	gene	gene1036	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1038
AHA_1039	AHA_1039		AHA_1039	1120304	1121518	-	methyl-accepting chemotaxis protein%2C putative	identified by match to protein family HMM PF00015	gene	gene1037	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1039
AHA_1040	AHA_1040		AHA_1040	1121822	1122910	-	3-oxoacyl-[acyl-carrier-protein] synthase III protein 1	identified by match to protein family HMM TIGR00747	gene	gene1038	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1040
AHA_1041	AHA_1041		AHA_1041	1123113	1124054	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1039	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1041
AHA_1042	AHA_1042		AHA_1042	1124090	1124791	+	transporter%2C LysE family	identified by match to protein family HMM PF01810	gene	gene1040	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1042
AHA_1043	AHA_1043		AHA_1043	1124894	1126753	+	peptidase%2C U32 family	identified by match to protein family HMM PF01136	gene	gene1041	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1043
AHA_1044	AHA_1044		AHA_1044	1126842	1127504	+	conserved hypothetical protein		gene	gene1042	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1044
AHA_1045	AHA_1045		AHA_1045	1127520	1127996	-	methylated-DNA--protein-cysteine methyltransferase	identified by match to protein family HMM PF01035%3B match to protein family HMM PF02870%3B match to protein family HMM TIGR00589	gene	gene1043	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1045
AHA_1046	AHA_1046		AHA_1046	1127993	1129558	-	helix-turn-helix%2C AraC type:HhH-GPD:Ada%2C metal-binding:AlkA%2C N-terminal	identified by match to protein family HMM PF00165%3B match to protein family HMM PF00730%3B match to protein family HMM PF02805%3B match to protein family HMM PF06029	gene	gene1044	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1046
AHA_1047	AHA_1047		AHA_1047	1129768	1130169	+	conserved hypothetical protein		gene	gene1045	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1047
AHA_1048	AHA_1048		AHA_1048	1130239	1131813	-	thermostable carboxypeptidase 1	identified by match to protein family HMM PF02074	gene	gene1046	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1048
AHA_1049	AHA_1049		AHA_1049	1131851	1132432	-	Smr domain protein	identified by match to protein family HMM PF01713	gene	gene1047	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1049
AHA_1050	AHA_1050		AHA_1050	1132586	1132771	-	conserved hypothetical protein		gene	gene1048	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1050
AHA_1051	AHA_1051		AHA_1051	1132904	1133797	-	GumN protein	identified by match to protein family HMM PF07446	gene	gene1049	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1051
AHA_1052	AHA_1052		AHA_1052	1134385	1135212	-	short-chain dehydrogenase/reductase	identified by match to protein family HMM PF00106	gene	gene1050	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1052
AHA_1053	AHA_1053		AHA_1053	1135331	1136776	-	putative outermembrane porin	identified by match to protein family HMM PF03573	gene	gene1051	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1053
AHA_1054	AHA_1054		AHA_1054	1137283	1139220	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1052	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1054
AHA_1055	AHA_1055		AHA_1055	1139338	1140234	-	integral membrane protein DUF6	identified by match to protein family HMM PF00892	gene	gene1053	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1055
AHA_1056	AHA_1056		AHA_1056	1140329	1141831	-	GntP	identified by match to protein family HMM PF02447%3B match to protein family HMM PF03600%3B match to protein family HMM TIGR00791	gene	gene1054	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1056
AHA_1057	AHA_1057		AHA_1057	1141828	1142772	-	NAD-dependent epimerase/dehydratase:Short-chain dehydrogenase/reductase SDR:3-beta hydroxysteroid dehydrogenase/isomerase:dTDP-4-dehydrorhamnose reductase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene1055	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1057
AHA_1058	AHA_1058		AHA_1058	1142808	1143581	-	AP endonuclease%2C family 2	identified by match to protein family HMM PF01261	gene	gene1056	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1058
AHA_1059	AHA_1059		AHA_1059	1143578	1144210	-	AraD protein	identified by match to protein family HMM PF00596	gene	gene1057	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1059
AHA_1060	AHA_1060		AHA_1060	1144203	1145453	-	YgbK domain protein	identified by match to protein family HMM PF07005	gene	gene1058	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1060
AHA_1061	AHA_1061		AHA_1061	1145450	1146358	-	NAD binding domain of 6-phosphogluconate dehydrogenase	identified by match to protein family HMM PF03446	gene	gene1059	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1061
AHA_1062	AHA_1062		AHA_1062	1146614	1147405	+	transcriptional regulator%2C DeoR family	identified by match to protein family HMM PF00455%3B match to protein family HMM PF08220	gene	gene1060	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1062
AHA_1063	AHA_1063		AHA_1063	1147784	1150480	-	conserved hypothetical protein		gene	gene1061	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1063
AHA_1064	AHA_1064		AHA_1064	1151726	1154476	+	invasin family protein	identified by similarity to SP:P11922%3B match to protein family HMM PF01476	gene	gene1062	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1064
AHA_1065	AHA_1065		AHA_1065	1154664	1155332	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1063	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1065
AHA_1066	AHA_1066		AHA_1066	1155644	1157251	+	intimin/invasin family protein	identified by similarity to SP:P11922%3B match to protein family HMM PF02369	gene	gene1064	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1066
AHA_1067	AHA_1067		AHA_1067	1157771	1158517	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1065	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1067
AHA_1068	AHA_1068		AHA_1068	1158514	1160730	+	sensory box/GGDEF family protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1066	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1068
AHA_1069	AHA_1069		AHA_1069	1161152	1161820	-	transcriptional regulator	identified by match to protein family HMM PF00486	gene	gene1067	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1069
AHA_1070	AHA_1070		AHA_1070	1162913	1163206	+	transcriptional activator protein	identified by match to protein family HMM PF00486	gene	gene1068	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1070
AHA_1071	AHA_1071		AHA_1071	1163620	1163766	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1069	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1071
AHA_1072	AHA_1072		AHA_1072	1164200	1165459	-	protein UmuC	identified by match to protein family HMM PF00817	gene	gene1070	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1072
AHA_1073	AHA_1073		AHA_1073	1165440	1165883	-	protein UmuD	identified by match to protein family HMM PF00717	gene	gene1071	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1073
AHA_1074	AHA_1074		AHA_1074	1166357	1168504	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1072	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1074
AHA_1075	AHA_1075		AHA_1075	1168501	1170042	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1073	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1075
AHA_1076	AHA_1076		AHA_1076	1169945	1175374	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1074	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1076
AHA_1077	AHA_1077		AHA_1077	1175428	1176750	-	modification methylase DdeI	identified by match to protein family HMM PF00145%3B match to protein family HMM TIGR00675	gene	gene1075	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1077
AHA_1078	AHA_1078		AHA_1078	1178163	1180091	-	protein of unknown function	identified by match to protein family HMM PF03235	gene	gene1076	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1078
AHA_1079	AHA_1079		AHA_1079	1180233	1180763	-	putative DNA repair protein RadC	identified by match to protein family HMM PF04002%3B match to protein family HMM TIGR00608	gene	gene1077	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1079
AHA_1080	AHA_1080		AHA_1080	1181510	1181935	-	conserved hypothetical protein		gene	gene1078	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1080
AHA_1081	AHA_1081		AHA_1081	1181955	1182302	-	conserved hypothetical protein	identified by match to protein family HMM PF06803	gene	gene1079	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1081
AHA_1082	AHA_1082		AHA_1082	1182386	1182835	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1080	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1082
AHA_1083	AHA_1083		AHA_1083	1182848	1183171	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1081	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1083
AHA_1084	AHA_1084		AHA_1084	1183418	1183768	+	helix-turn-helix domain protein	identified by match to protein family HMM PF01381	gene	gene1082	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1084
AHA_1085	AHA_1085		AHA_1085	1183780	1184619	-	conserved hypothetical protein	identified by similarity to GB:AAN68106.1	gene	gene1083	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1085
AHA_1086	AHA_1086		AHA_1086	1184757	1185746	-	putative phage protein		gene	gene1084	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1086
AHA_1087	AHA_1087		AHA_1087	1185841	1186791	-	conserved hypothetical protein		gene	gene1085	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1087
AHA_1088	AHA_1088		AHA_1088	1187027	1187103	-	tRNA-Arg		tRNA	gene1086	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1088
AHA_1089	AHA_1089		AHA_1089	1187154	1188308	-	conserved hypothetical protein		gene	gene1087	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1089
AHA_1090	AHA_1090		AHA_1090	1188389	1189123	+	conserved hypothetical protein		gene	gene1088	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1090
AHA_1091	AHA_1091		AHA_1091	1189139	1189570	+	protein of unknown function	identified by match to protein family HMM PF04164	gene	gene1089	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1091
AHA_1092	AHA_1092	pheA	pheA	1189671	1190843	-	chorismate mutase/prephenate dehydratase	identified by match to protein family HMM PF00800%3B match to protein family HMM PF01817%3B match to protein family HMM TIGR01797	gene	gene1090	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1092
AHA_1093	AHA_1093		AHA_1093	1190965	1191012	-	Phe leader peptide		gene	gene1091	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1093
AHA_1094	AHA_1094		AHA_1094	1191186	1191785	+	hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509	gene	gene1092	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1094
AHA_1095	AHA_1095		AHA_1095	1191811	1192089	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1093	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1095
AHA_1096	AHA_1096		AHA_1096	1192135	1193007	+	conserved hypothetical protein		gene	gene1094	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1096
AHA_1097	AHA_1097		AHA_1097	1193103	1193651	+	conserved hypothetical protein		gene	gene1095	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1097
AHA_1098	AHA_1098		AHA_1098	1193836	1194465	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1096	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1098
AHA_1099	AHA_1099		AHA_1099	1194638	1195582	+	conserved hypothetical protein	identified by match to protein family HMM PF04463	gene	gene1097	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1099
AHA_1100	AHA_1100		AHA_1100	1195646	1196533	+	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene1098	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1100
AHA_1101	AHA_1101	phrB	phrB	1196530	1197951	+	deoxyribodipyrimidine photolyase	identified by match to protein family HMM PF00875%3B match to protein family HMM PF03441	gene	gene1099	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1101
AHA_1102	AHA_1102		AHA_1102	1197953	1198381	+	putative transcriptional regulator	identified by match to protein family HMM PF07366	gene	gene1100	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1102
AHA_1103	AHA_1103		AHA_1103	1198378	1199115	+	oxidoreductase%2C short-chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene1101	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1103
AHA_1104	AHA_1104		AHA_1104	1199112	1200371	+	amino-oxidase	identified by match to protein family HMM PF01593	gene	gene1102	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1104
AHA_1105	AHA_1105		AHA_1105	1200368	1201150	+	plasmid partition ParA protein	identified by match to protein family HMM PF07103	gene	gene1103	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1105
AHA_1106	AHA_1106		AHA_1106	1201150	1202406	+	cyclopropane-fatty-acyl-phospholipid synthase	identified by match to protein family HMM PF02353	gene	gene1104	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1106
AHA_1107	AHA_1107		AHA_1107	1202885	1203103	+	conserved hypothetical protein		gene	gene1105	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1107
AHA_1108	AHA_1108		AHA_1108	1203120	1203611	+	conserved hypothetical protein		gene	gene1106	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1108
AHA_1109	AHA_1109		AHA_1109	1203611	1204168	+	lipoprotein%2C putative		gene	gene1107	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1109
AHA_1110	AHA_1110		AHA_1110	1204293	1204760	+	DPS family protein	identified by match to protein family HMM PF00210	gene	gene1108	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1110
AHA_1111	AHA_1111		AHA_1111	1205088	1206737	+	hybrid cluster protein	identified by match to protein family HMM PF03063%3B match to protein family HMM TIGR01703	gene	gene1109	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1111
AHA_1112	AHA_1112		AHA_1112	1206852	1207871	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970	gene	gene1110	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1112
AHA_1113	AHA_1113	galE-1	galE-1	1207957	1208982	+	UDP-glucose 4-epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF05368%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179	gene	gene1111	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1113
AHA_1114	AHA_1114		AHA_1114	1209157	1209906	-	outer membrane protein	identified by match to protein family HMM PF01323	gene	gene1112	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1114
AHA_1115	AHA_1115		AHA_1115	1209933	1210028	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1113	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1115
AHA_1116	AHA_1116		AHA_1116	1210105	1210192	+	tRNA-Ser		tRNA	gene1114	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1116
AHA_1117	AHA_1117		AHA_1117	1210730	1211524	+	transcriptional activator protein AhyR/asaR	identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472%3B match to protein family HMM PF04967	gene	gene1115	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1117
AHA_1118	AHA_1118		AHA_1118	1211755	1212273	+	HcpA homolog	identified by match to protein family HMM PF05638	gene	gene1116	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1118
AHA_1119	AHA_1119		AHA_1119	1212752	1215535	+	Rhs element Vgr protein	identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646	gene	gene1117	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1119
AHA_1120	AHA_1120		AHA_1120	1215532	1216332	+	type III secretion protein		gene	gene1118	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1120
AHA_1121	AHA_1121		AHA_1121	1216332	1218284	+	conserved hypothetical protein		gene	gene1119	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1121
AHA_1122	AHA_1122		AHA_1122	1218284	1218982	+	conserved hypothetical protein		gene	gene1120	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1122
AHA_1123	AHA_1123		AHA_1123	1219157	1219858	+	conserved hypothetical protein		gene	gene1121	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1123
AHA_1124	AHA_1124		AHA_1124	1219986	1220870	-	LysR-family transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1122	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1124
AHA_1125	AHA_1125	budA	budA	1220980	1221759	+	alpha-acetolactate decarboxylase	identified by match to protein family HMM PF03306%3B match to protein family HMM TIGR01252	gene	gene1123	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1125
AHA_1126	AHA_1126	alsS	alsS	1221787	1223457	+	acetolactate synthase%2C catabolic	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR02418	gene	gene1124	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1126
AHA_1127	AHA_1127		AHA_1127	1223551	1224129	-	4-methyl-5(B-hydroxyethyl)-thiazole monophosphate biosynthesis enzyme	identified by match to protein family HMM PF01965%3B match to protein family HMM TIGR01383	gene	gene1125	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1127
AHA_1128	AHA_1128	panE	panE	1224163	1225110	-	2-dehydropantoate 2-reductase	identified by match to protein family HMM PF02558%3B match to protein family HMM TIGR00745	gene	gene1126	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1128
AHA_1129	AHA_1129		AHA_1129	1225468	1225950	+	conserved hypothetical protein	identified by similarity to SP:P59562%3B match to protein family HMM PF04461	gene	gene1127	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1129
AHA_1130	AHA_1130		AHA_1130	1226053	1226895	-	outer membrane protein	identified by match to protein family HMM PF03502	gene	gene1128	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1130
AHA_1131	AHA_1131		AHA_1131	1227052	1228431	-	muropeptide permease AmpG	identified by match to protein family HMM PF07690	gene	gene1129	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1131
AHA_1132	AHA_1132		AHA_1132	1228962	1229513	-	peptidyl-prolyl cis-trans isomerase B	identified by match to protein family HMM PF00160	gene	gene1130	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1132
AHA_1133	AHA_1133		AHA_1133	1229529	1230101	-	conserved hypothetical protein	identified by match to protein family HMM PF03923	gene	gene1131	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1133
AHA_1134	AHA_1134		AHA_1134	1230126	1231268	-	putative ribosomal RNA small subunit methyltransferase D (rRNA (guanine-N(2)-)-methyltransferase)	identified by match to protein family HMM PF05175	gene	gene1132	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1134
AHA_1135	AHA_1135		AHA_1135	1231475	1231783	+	BolA protein	identified by match to protein family HMM PF01722	gene	gene1133	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1135
AHA_1136	AHA_1136	nqrA	nqrA	1232225	1233568	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C A subunit	identified by match to protein family HMM PF05896%3B match to protein family HMM TIGR01936	gene	gene1134	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1136
AHA_1137	AHA_1137	nqrB	nqrB	1233572	1234801	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C B subunit	identified by match to protein family HMM PF03116%3B match to protein family HMM TIGR01937	gene	gene1135	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1137
AHA_1138	AHA_1138	nqrC	nqrC	1234791	1235579	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C C subunit	identified by match to protein family HMM PF04205%3B match to protein family HMM TIGR01938	gene	gene1136	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1138
AHA_1139	AHA_1139	nqrD	nqrD	1235572	1236204	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C D subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01939	gene	gene1137	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1139
AHA_1140	AHA_1140	nqrE-1	nqrE-1	1236208	1236804	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C E subunit	identified by similarity to SP:Q56589%3B match to protein family HMM PF02508%3B match to protein family HMM TIGR01940	gene	gene1138	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1140
AHA_1141	AHA_1141	nqrF	nqrF	1236822	1238045	+	NADH:ubiquinone oxidoreductase%2C Na(+)-translocating%2C F subunit	identified by similarity to SP:Q56584%3B match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM TIGR01941	gene	gene1139	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1141
AHA_1142	AHA_1142		AHA_1142	1238049	1239089	+	thiamine biosynthesis lipoprotein ApbE	identified by match to protein family HMM PF02424	gene	gene1140	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1142
AHA_1143	AHA_1143		AHA_1143	1239101	1239325	+	conserved hypothetical protein	identified by match to protein family HMM PF04400	gene	gene1141	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1143
AHA_1144	AHA_1144		AHA_1144	1239413	1239625	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1142	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1144
AHA_1145	AHA_1145	dinB	dinB	1239758	1240810	+	DNA polymerase IV	identified by match to protein family HMM PF00817	gene	gene1143	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1145
AHA_1146	AHA_1146		AHA_1146	1240879	1243020	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1144	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1146
AHA_1147	AHA_1147	gcvA	gcvA	1243304	1244224	+	glycine cleavage system transcriptional activator	identified by similarity to SP:P0A9F6%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1145	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1147
AHA_1148	AHA_1148		AHA_1148	1244217	1244855	+	esterase/lipase/thioesterase family active site		gene	gene1146	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1148
AHA_1149	AHA_1149		AHA_1149	1244888	1245274	+	putative membrane protein	identified by match to protein family HMM PF04241	gene	gene1147	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1149
AHA_1150	AHA_1150		AHA_1150	1245267	1246361	+	methyltransferase		gene	gene1148	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1150
AHA_1151	AHA_1151		AHA_1151	1246432	1246872	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1149	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1151
AHA_1152	AHA_1152		AHA_1152	1246993	1248000	-	3-isopropylmalate dehydrogenase	identified by match to protein family HMM PF00180	gene	gene1150	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1152
AHA_1153	AHA_1153	xni	xni	1248147	1249052	-	exodeoxyribonuclease IX	identified by match to protein family HMM PF01367%3B match to protein family HMM PF02739	gene	gene1151	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1153
AHA_1154	AHA_1154		AHA_1154	1249081	1250436	-	lysine decarboxylase family protein	identified by match to protein family HMM PF03641	gene	gene1152	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1154
AHA_1155	AHA_1155		AHA_1155	1250587	1252206	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1153	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1155
AHA_1156	AHA_1156		AHA_1156	1252297	1254567	-	tetratricopeptide repeat domain protein	identified by match to protein family HMM PF00515	gene	gene1154	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1156
AHA_1157	AHA_1157		AHA_1157	1254702	1255610	-	GTP cyclohydrolase I family protein	identified by match to protein family HMM PF01227	gene	gene1155	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1157
AHA_1158	AHA_1158		AHA_1158	1255708	1256256	+	Syd protein	identified by match to protein family HMM PF07348	gene	gene1156	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1158
AHA_1159	AHA_1159		AHA_1159	1256326	1257111	-	Zn-ribbon-containing protein		gene	gene1157	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1159
AHA_1160	AHA_1160		AHA_1160	1257500	1257736	-	conserved hypothetical protein		gene	gene1158	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1160
AHA_1161	AHA_1161		AHA_1161	1257794	1258093	-	conserved hypothetical protein	identified by similarity to GB:AAW85105.1	gene	gene1159	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1161
AHA_1162	AHA_1162		AHA_1162	1258163	1259191	-	conserved hypothetical protein		gene	gene1160	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1162
AHA_1163	AHA_1163		AHA_1163	1259455	1259790	+	conserved hypothetical protein	identified by match to protein family HMM PF04287	gene	gene1161	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1163
AHA_1164	AHA_1164		AHA_1164	1259787	1260560	+	RNA pseudouridine synthase family protein	identified by match to protein family HMM PF00849	gene	gene1162	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1164
AHA_1165	AHA_1165		AHA_1165	1260637	1261077	+	protein MioC	identified by match to protein family HMM PF00258	gene	gene1163	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1165
AHA_1166	AHA_1166		AHA_1166	1261489	1262922	+	maltoporin	identified by match to protein family HMM PF02264	gene	gene1164	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1166
AHA_1167	AHA_1167		AHA_1167	1262999	1263985	+	maltose operon periplasmic protein	identified by match to protein family HMM PF07148	gene	gene1165	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1167
AHA_1168	AHA_1168	ptsG	ptsG	1264417	1265847	+	PTS system%2C glucose-specific IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR02002	gene	gene1166	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1168
AHA_1169	AHA_1169		AHA_1169	1266028	1266411	-	conserved hypothetical protein		gene	gene1167	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1169
AHA_1170	AHA_1170	dapD	dapD	1266540	1267367	-	2%2C3%2C4%2C5-tetrahydropyridine-2%2C6-dicarboxylate N-succinyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR00965	gene	gene1168	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1170
AHA_1171	AHA_1171	glnD	glnD	1267534	1270188	-	protein-P-II uridylyltransferase	identified by similarity to SP:P27249%3B match to protein family HMM PF01842%3B match to protein family HMM PF01909%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR01693	gene	gene1169	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1171
AHA_1172	AHA_1172	map	map	1270286	1271074	-	methionine aminopeptidase%2C type I	identified by similarity to SP:P07906%3B match to protein family HMM PF00557%3B match to protein family HMM TIGR00500	gene	gene1170	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1172
AHA_1173	AHA_1173	rpsB	rpsB	1271434	1272162	+	ribosomal protein S2	identified by match to protein family HMM PF00318%3B match to protein family HMM TIGR01011	gene	gene1171	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1173
AHA_1174	AHA_1174	tsf	tsf	1272267	1273148	+	translation elongation factor Ts	identified by match to protein family HMM PF00627%3B match to protein family HMM PF00889%3B match to protein family HMM TIGR00116	gene	gene1172	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1174
AHA_1175	AHA_1175	pyrH	pyrH	1273220	1273954	+	uridylate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR02075	gene	gene1173	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1175
AHA_1176	AHA_1176	frr	frr	1274049	1274606	+	ribosome recycling factor	identified by match to protein family HMM PF01765%3B match to protein family HMM TIGR00496	gene	gene1174	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1176
AHA_1177	AHA_1177	uppS	uppS	1274679	1275455	+	undecaprenyl diphosphate synthase	identified by match to protein family HMM PF01255%3B match to protein family HMM TIGR00055	gene	gene1175	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1177
AHA_1178	AHA_1178	cdsA	cdsA	1275482	1276339	+	phosphatidate cytidylyltransferase	identified by match to protein family HMM PF01148	gene	gene1176	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1178
AHA_1179	AHA_1179	dxr	dxr	1276403	1277596	+	1-deoxy-D-xylulose 5-phosphate reductoisomerase	identified by match to protein family HMM PF02670%3B match to protein family HMM TIGR00243	gene	gene1177	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1179
AHA_1180	AHA_1180	ecfE	ecfE	1277679	1279031	+	peptidase EcfE	identified by similarity to SP:P37764%3B match to protein family HMM PF02163%3B match to protein family HMM TIGR00054	gene	gene1178	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1180
AHA_1181	AHA_1181		AHA_1181	1279066	1281489	+	outer membrane protein%2C OMP85 family	identified by match to protein family HMM PF01103%3B match to protein family HMM PF07244	gene	gene1179	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1181
AHA_1182	AHA_1182		AHA_1182	1281638	1282150	+	outer membrane protein	identified by match to protein family HMM PF03938	gene	gene1180	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1182
AHA_1183	AHA_1183	lpxD	lpxD	1282154	1283173	+	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM PF04613%3B match to protein family HMM TIGR01853	gene	gene1181	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1183
AHA_1184	AHA_1184	fabZ	fabZ	1283198	1283659	+	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ	identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01750	gene	gene1182	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1184
AHA_1185	AHA_1185	lpxA	lpxA	1283665	1284456	+	acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM TIGR01852	gene	gene1183	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1185
AHA_1186	AHA_1186	lpxB	lpxB	1284449	1285588	+	lipid-A-disaccharide synthase	identified by match to protein family HMM PF02684%3B match to protein family HMM TIGR00215	gene	gene1184	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1186
AHA_1187	AHA_1187	rnhB	rnhB	1285619	1286254	+	ribonuclease HII	identified by match to protein family HMM PF01351	gene	gene1185	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1187
AHA_1188	AHA_1188	dnaE	dnaE	1286293	1289772	+	DNA polymerase III%2C alpha subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02811%3B match to protein family HMM PF07733%3B match to protein family HMM TIGR00594	gene	gene1186	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1188
AHA_1189	AHA_1189	accA	accA	1289753	1290739	+	acetyl-CoA carboxylase%2C carboxyl transferase%2C alpha subunit	identified by match to protein family HMM PF03255%3B match to protein family HMM TIGR00513	gene	gene1187	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1189
AHA_1190	AHA_1190		AHA_1190	1291144	1292664	+	transcriptional activator CadC	identified by match to protein family HMM PF00486	gene	gene1188	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1190
AHA_1191	AHA_1191	cadB	cadB	1293430	1294764	+	putative cadaverine:lysine antiporter	identified by similarity to SP:P0AAE8%3B match to protein family HMM PF00324	gene	gene1189	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1191
AHA_1192	AHA_1192		AHA_1192	1294841	1296973	+	lysine decarboxylase%2C constitutive	identified by match to protein family HMM PF01276%3B match to protein family HMM PF03709%3B match to protein family HMM PF03711	gene	gene1190	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1192
AHA_1193	AHA_1193	pdxY-1	pdxY-1	1297046	1297912	+	pyridoxal kinase	identified by similarity to SP:P77150%3B match to protein family HMM TIGR00687	gene	gene1191	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1193
AHA_1194	AHA_1194		AHA_1194	1297922	1299343	-	cation (Na+-coupled) multidrug resistance efflux pump	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene1192	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1194
AHA_1195	AHA_1195		AHA_1195	1299450	1300358	-	putative HTH-type transcriptional regulator YcaN	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1193	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1195
AHA_1196	AHA_1196		AHA_1196	1300872	1302158	+	serine transporter family protein	identified by similarity to SP:P0AAD6%3B match to protein family HMM PF01490%3B match to protein family HMM TIGR00814	gene	gene1194	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1196
AHA_1197	AHA_1197		AHA_1197	1302226	1303266	-	ribonuclease Z%2C putative	identified by match to protein family HMM PF00753	gene	gene1195	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1197
AHA_1198	AHA_1198		AHA_1198	1303423	1304325	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1196	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1198
AHA_1199	AHA_1199		AHA_1199	1304345	1305364	-	dienelactone hydrolase domain protein		gene	gene1197	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1199
AHA_1200	AHA_1200		AHA_1200	1305310	1306221	-	dienelactone hydrolase domain protein		gene	gene1198	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1200
AHA_1201	AHA_1201		AHA_1201	1306469	1307362	+	putative HTH-type transcriptional regulator YcjZ	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1199	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1201
AHA_1202	AHA_1202		AHA_1202	1307499	1308779	+	AsoB	identified by match to protein family HMM PF00324	gene	gene1200	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1202
AHA_1203	AHA_1203		AHA_1203	1308820	1309359	-	ribosomal-protein-alanine N-acetyltransferase%2C putative	identified by match to protein family HMM PF00583	gene	gene1201	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1203
AHA_1204	AHA_1204		AHA_1204	1309443	1311182	-	ABC transporter%2C ATP-binding protein%2C EF-3 family	identified by match to protein family HMM PF00005	gene	gene1202	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1204
AHA_1205	AHA_1205		AHA_1205	1311547	1311984	-	putative exported protein		gene	gene1203	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1205
AHA_1206	AHA_1206		AHA_1206	1312096	1314141	-	peptidase%2C M13 family	identified by match to protein family HMM PF01431%3B match to protein family HMM PF05649	gene	gene1204	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1206
AHA_1207	AHA_1207	tilS	tilS	1314255	1315595	+	tRNA(Ile)-lysidine synthetase	identified by similarity to SP:P52097%3B match to protein family HMM PF01171%3B match to protein family HMM TIGR02432%3B match to protein family HMM TIGR02433	gene	gene1205	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1207
AHA_1208	AHA_1208		AHA_1208	1315671	1316606	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1206	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1208
AHA_1209	AHA_1209		AHA_1209	1316704	1318644	+	Kef-type K+ transport system%2C membrane component	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene1207	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1209
AHA_1210	AHA_1210		AHA_1210	1318726	1319871	-	patatin	identified by match to protein family HMM PF01734	gene	gene1208	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1210
AHA_1211	AHA_1211		AHA_1211	1319993	1320811	-	esterase/lipase		gene	gene1209	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1211
AHA_1212	AHA_1212		AHA_1212	1320934	1321515	-	transcriptional regulator	identified by match to protein family HMM PF00440	gene	gene1210	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1212
AHA_1213	AHA_1213		AHA_1213	1321603	1322247	-	positive regulator AgmR	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene1211	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1213
AHA_1214	AHA_1214		AHA_1214	1322406	1323032	+	glutathione S-transferase%2C N-terminal	identified by match to protein family HMM PF02798	gene	gene1212	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1214
AHA_1215	AHA_1215		AHA_1215	1323129	1325237	-	alpha-amylase	identified by match to protein family HMM PF00128	gene	gene1213	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1215
AHA_1216	AHA_1216		AHA_1216	1325445	1326608	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1214	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1216
AHA_1217	AHA_1217		AHA_1217	1326608	1326979	-	conserved hypothetical protein	identified by match to protein family HMM PF04138	gene	gene1215	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1217
AHA_1218	AHA_1218		AHA_1218	1326976	1328037	-	bactoprenol glucosyl transferase	identified by match to protein family HMM PF00535	gene	gene1216	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1218
AHA_1219	AHA_1219		AHA_1219	1328094	1328639	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1217	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1219
AHA_1220	AHA_1220		AHA_1220	1328953	1329063	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1218	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1220
AHA_1221	AHA_1221		AHA_1221	1329044	1329736	+	probable amino acid ABC transporter%2C periplasmic-binding protein%2C putative		gene	gene1219	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1221
AHA_1222	AHA_1222		AHA_1222	1330001	1331302	+	cell wall degradation protein	identified by match to protein family HMM PF01471	gene	gene1220	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1222
AHA_1223	AHA_1223		AHA_1223	1331453	1331998	+	nonpeptidase homolog%2C peptidase M15 family	identified by match to protein family HMM PF02557%3B match to protein family HMM PF05951%3B match to protein family HMM TIGR01409	gene	gene1221	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1223
AHA_1224	AHA_1224		AHA_1224	1332091	1332342	+	conserved hypothetical protein		gene	gene1222	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1224
AHA_1225	AHA_1225		AHA_1225	1332437	1333051	-	putative membrane protein	identified by match to protein family HMM PF03458	gene	gene1223	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1225
AHA_1226	AHA_1226	cysZ	cysZ	1333194	1333958	-	protein CysZ	identified by match to protein family HMM PF04401	gene	gene1224	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1226
AHA_1227	AHA_1227	smc	smc	1334068	1337442	+	chromosome segregation protein SMC	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR02168	gene	gene1225	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1227
AHA_1228	AHA_1228	zipA	zipA	1337458	1338570	+	cell division protein ZipA	identified by similarity to SP:P77173%3B match to protein family HMM PF04354%3B match to protein family HMM TIGR02205	gene	gene1226	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1228
AHA_1229	AHA_1229	ligA	ligA	1338670	1340676	+	DNA ligase%2C NAD-dependent	identified by match to protein family HMM PF00533%3B match to protein family HMM PF01653%3B match to protein family HMM PF03119%3B match to protein family HMM PF03120%3B match to protein family HMM TIGR00575	gene	gene1227	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1229
AHA_1230	AHA_1230		AHA_1230	1340750	1341727	-	ABC-type sugar transport system%2C ATPase component		gene	gene1228	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1230
AHA_1231	AHA_1231	nrdD	nrdD	1342170	1344287	+	anaerobic ribonucleoside-triphosphate reductase	identified by match to protein family HMM PF01228%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02487	gene	gene1229	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1231
AHA_1232	AHA_1232	nrdG	nrdG	1344417	1344926	+	anaerobic ribonucleoside-triphosphate reductase activating protein	identified by match to protein family HMM TIGR02491	gene	gene1230	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1232
AHA_1233	AHA_1233		AHA_1233	1344964	1345161	+	conserved domain protein	identified by match to protein family HMM PF01679	gene	gene1231	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1233
AHA_1234	AHA_1234		AHA_1234	1345306	1345698	+	conserved hypothetical protein		gene	gene1232	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1234
AHA_1235	AHA_1235		AHA_1235	1345730	1346089	-	conserved hypothetical protein		gene	gene1233	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1235
AHA_1236	AHA_1236		AHA_1236	1346217	1346978	-	amino acid ABC transporter%2C periplasmic amino acid-binding		gene	gene1235	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1236
AHA_1237	AHA_1237		AHA_1237	1346055	1347104	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1234	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1237
AHA_1238	AHA_1238		AHA_1238	1347120	1348148	-	conserved hypothetical protein		gene	gene1236	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1238
AHA_1239	AHA_1239		AHA_1239	1348159	1349214	-	HlyD family secretion protein	identified by match to protein family HMM PF00529	gene	gene1237	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1239
AHA_1240	AHA_1240		AHA_1240	1349229	1349696	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1238	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1240
AHA_1241	AHA_1241		AHA_1241	1350015	1350206	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1239	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1241
AHA_1242	AHA_1242		AHA_1242	1350752	1352059	+	sodium:citrate symporter	identified by match to protein family HMM PF03390	gene	gene1240	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1242
AHA_1243	AHA_1243		AHA_1243	1352086	1353621	+	NAD-dependent malic enzyme	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene1241	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1243
AHA_1244	AHA_1244		AHA_1244	1353639	1355207	+	sensor kinase CitA%2C putative	identified by match to protein family HMM PF02518	gene	gene1242	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1244
AHA_1245	AHA_1245		AHA_1245	1355211	1355903	+	transcriptional regulatory protein DpiA	identified by match to protein family HMM PF00072	gene	gene1243	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1245
AHA_1246	AHA_1246		AHA_1246	1356001	1356900	-	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene1244	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1246
AHA_1247	AHA_1247		AHA_1247	1356997	1357803	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165%3B match to protein family HMM PF02311%3B match to protein family HMM PF07883	gene	gene1245	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1247
AHA_1248	AHA_1248		AHA_1248	1357867	1359429	-	aldehyde dehydrogenase	identified by match to protein family HMM PF00171	gene	gene1246	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1248
AHA_1249	AHA_1249		AHA_1249	1359621	1361297	+	acetoin catabolism regulatory protein	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954	gene	gene1247	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1249
AHA_1250	AHA_1250		AHA_1250	1361384	1362559	+	glutaryl-CoA dehydrogenase	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene1248	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1250
AHA_1251	AHA_1251		AHA_1251	1362559	1363713	+	caib/baif family protein	identified by match to protein family HMM PF02515	gene	gene1249	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1251
AHA_1252	AHA_1252		AHA_1252	1363753	1364250	+	lactoylglutathione lyase	identified by match to protein family HMM PF00903	gene	gene1250	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1252
AHA_1253	AHA_1253	phoB	phoB	1364353	1365042	+	phosphate regulon transcriptional regulatory protein PhoB	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486%3B match to protein family HMM TIGR02154	gene	gene1251	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1253
AHA_1254	AHA_1254	phoR	phoR	1365051	1366346	+	phosphate regulon sensor protein PhoR	identified by similarity to SP:P08400%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR02966	gene	gene1252	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1254
AHA_1255	AHA_1255		AHA_1255	1366723	1367697	+	phosphate-binding protein	identified by match to protein family HMM TIGR02136	gene	gene1253	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1255
AHA_1256	AHA_1256		AHA_1256	1367861	1368667	+	peptidase%2C M48 family	identified by match to protein family HMM PF01435	gene	gene1254	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1256
AHA_1257	AHA_1257		AHA_1257	1368655	1369161	+	GCN5-related N-acetyltransferase	identified by match to protein family HMM PF00583	gene	gene1255	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1257
AHA_1258	AHA_1258		AHA_1258	1369271	1370173	+	ROK family protein	identified by match to protein family HMM PF00480	gene	gene1256	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1258
AHA_1259	AHA_1259		AHA_1259	1370216	1370941	+	copper homeostasis protein CutC	identified by match to protein family HMM PF03932	gene	gene1257	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1259
AHA_1260	AHA_1260		AHA_1260	1370950	1371069	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1258	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1260
AHA_1261	AHA_1261	fklB	fklB	1371255	1371866	+	FKBP-type peptidyl-prolyl cis-trans isomerase FklB	identified by match to protein family HMM PF00254%3B match to protein family HMM PF01346	gene	gene1259	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1261
AHA_1262	AHA_1262		AHA_1262	1371996	1372877	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1260	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1262
AHA_1263	AHA_1263		AHA_1263	1372951	1373964	+	ABC transporter permease protein	identified by match to protein family HMM PF01061	gene	gene1261	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1263
AHA_1264	AHA_1264		AHA_1264	1373961	1374275	+	conserved hypothetical protein	identified by similarity to GB:AAN53512.1	gene	gene1262	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1264
AHA_1265	AHA_1265		AHA_1265	1374332	1374694	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1263	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1265
AHA_1266	AHA_1266		AHA_1266	1374736	1375239	+	nudix hydrolase 3	identified by match to protein family HMM PF00293	gene	gene1264	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1266
AHA_1267	AHA_1267		AHA_1267	1375303	1376229	-	putative phenylacetate-CoA ligase		gene	gene1265	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1267
AHA_1268	AHA_1268		AHA_1268	1376356	1376829	+	peroxiredoxin	identified by match to protein family HMM PF00578	gene	gene1266	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1268
AHA_1269	AHA_1269		AHA_1269	1376954	1377922	+	putative K+-dependent Na+/Ca+ exchanger homolog	identified by match to protein family HMM PF01699%3B match to protein family HMM TIGR00367	gene	gene1267	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1269
AHA_1270	AHA_1270		AHA_1270	1377992	1379143	-	ornithine decarboxylase	identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784	gene	gene1268	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1270
AHA_1271	AHA_1271	agcS-1	agcS-1	1379859	1381235	+	amino acid carrier protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene1269	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1271
AHA_1272	AHA_1272		AHA_1272	1381345	1382046	-	biotin/lipoate A/B protein ligase family	identified by match to protein family HMM PF03099	gene	gene1270	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1272
AHA_1273	AHA_1273	yicE	yicE	1382146	1383543	-	xanthine permease	identified by similarity to GB:AAN82915.1%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801	gene	gene1271	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1273
AHA_1274	AHA_1274		AHA_1274	1383790	1384929	+	response regulator PleD (Stalked cell differentiation-controllingprotein)	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1272	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1274
AHA_1275	AHA_1275		AHA_1275	1384964	1385212	-	protein YciN		gene	gene1273	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1275
AHA_1276	AHA_1276		AHA_1276	1385363	1386742	-	mate efflux family protein	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene1274	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1276
AHA_1277	AHA_1277		AHA_1277	1386914	1387720	+	helix-turn-helix%2C AraC type:Arac protein%2C arabinose-binding/dimerisation	identified by match to protein family HMM PF00165	gene	gene1275	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1277
AHA_1278	AHA_1278		AHA_1278	1387717	1389483	+	NAD-dependent malic enzyme	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene1276	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1278
AHA_1279	AHA_1279		AHA_1279	1389624	1390679	-	major outer membrane protein OmpAII	identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389	gene	gene1277	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1279
AHA_1280	AHA_1280		AHA_1280	1390891	1391892	-	major outer membrane protein OmpAII	identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389	gene	gene1278	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1280
AHA_1281	AHA_1281		AHA_1281	1392324	1393358	-	major outer membrane protein	identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389	gene	gene1279	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1281
AHA_1282	AHA_1282		AHA_1282	1393667	1394263	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1280	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1282
AHA_1283	AHA_1283		AHA_1283	1394522	1394788	+	transcriptional protein	identified by match to protein family HMM PF01381	gene	gene1281	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1283
AHA_1284	AHA_1284		AHA_1284	1394993	1396354	+	sodium-dependent symporter family protein	identified by match to protein family HMM PF00209	gene	gene1282	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1284
AHA_1285	AHA_1285		AHA_1285	1396442	1397308	-	alpha-beta superfamily hydrolase	identified by match to protein family HMM PF01734	gene	gene1283	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1285
AHA_1286	AHA_1286		AHA_1286	1397342	1398895	-	sensor histidine kinase	identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254	gene	gene1284	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1286
AHA_1287	AHA_1287		AHA_1287	1399092	1400153	+	HlyD family secretion protein	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene1285	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1287
AHA_1288	AHA_1288		AHA_1288	1400153	1403272	+	AcrB/AcrD/AcrF family protein	identified by match to protein family HMM PF00873	gene	gene1286	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1288
AHA_1289	AHA_1289		AHA_1289	1403366	1403734	+	conserved hypothetical protein		gene	gene1287	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1289
AHA_1290	AHA_1290		AHA_1290	1403872	1406280	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene1288	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1290
AHA_1291	AHA_1291		AHA_1291	1406570	1407529	-	conserved hypothetical protein		gene	gene1289	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1291
AHA_1292	AHA_1292		AHA_1292	1407548	1408483	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1290	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1292
AHA_1293	AHA_1293		AHA_1293	1408883	1409230	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1291	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1293
AHA_1294	AHA_1294		AHA_1294	1409232	1410272	-	transcriptional regulator%2C AraC/XylS family	identified by match to protein family HMM PF00165	gene	gene1292	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1294
AHA_1295	AHA_1295		AHA_1295	1410464	1410805	+	inner membrane protein YhaI	identified by match to protein family HMM PF05656	gene	gene1293	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1295
AHA_1296	AHA_1296		AHA_1296	1410802	1411284	+	conserved hypothetical protein		gene	gene1294	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1296
AHA_1297	AHA_1297		AHA_1297	1411339	1411773	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1296	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1297
AHA_1298	AHA_1298		AHA_1298	1411303	1411725	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1295	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1298
AHA_1299	AHA_1299		AHA_1299	1411770	1412303	-	DinB family	identified by match to protein family HMM PF05163	gene	gene1297	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1299
AHA_1300	AHA_1300		AHA_1300	1412491	1413399	+	oxidoreductase%2C Gfo/Idh/MocA family	identified by match to protein family HMM PF01408	gene	gene1298	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1300
AHA_1301	AHA_1301	ruvC	ruvC	1413664	1414185	+	crossover junction endodeoxyribonuclease RuvC	identified by match to protein family HMM PF02075%3B match to protein family HMM TIGR00228	gene	gene1299	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1301
AHA_1302	AHA_1302		AHA_1302	1414508	1415194	+	aquaporin Z	identified by match to protein family HMM PF00230%3B match to protein family HMM TIGR00861	gene	gene1300	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1302
AHA_1303	AHA_1303		AHA_1303	1415318	1416061	-	transglycosylase SLT domain protein	identified by match to protein family HMM PF01464	gene	gene1301	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1303
AHA_1304	AHA_1304		AHA_1304	1416240	1417601	-	alpha-amylase	identified by similarity to SP:P22630%3B match to protein family HMM PF00128	gene	gene1302	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1304
AHA_1305	AHA_1305		AHA_1305	1417832	1418995	-	protease LasA	identified by match to protein family HMM PF01551	gene	gene1303	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1305
AHA_1306	AHA_1306		AHA_1306	1419424	1419903	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1304	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1306
AHA_1307	AHA_1307		AHA_1307	1419908	1420516	-	conserved hypothetical protein	identified by match to protein family HMM PF07273	gene	gene1305	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1307
AHA_1308	AHA_1308		AHA_1308	1420548	1422029	+	cardiolipin synthetase	identified by match to protein family HMM PF00614	gene	gene1306	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1308
AHA_1309	AHA_1309		AHA_1309	1422125	1423387	+	putative lipoprotein		gene	gene1307	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1309
AHA_1310	AHA_1310	purU	purU	1423457	1424293	-	formyltetrahydrofolate deformylase	identified by match to protein family HMM PF00551%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00655	gene	gene1308	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1310
AHA_1311	AHA_1311	ribB	ribB	1424752	1425405	+	3%2C4-dihydroxy-2-butanone 4-phosphate synthase	identified by match to protein family HMM PF00926%3B match to protein family HMM TIGR00506	gene	gene1309	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1311
AHA_1312	AHA_1312		AHA_1312	1426013	1426861	-	thioredoxin domain protein	identified by match to protein family HMM PF00085	gene	gene1310	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1312
AHA_1313	AHA_1313		AHA_1313	1426858	1427580	-	4'-phosphopantetheinyltransferase family protein	identified by match to protein family HMM PF01648	gene	gene1311	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1313
AHA_1314	AHA_1314		AHA_1314	1427844	1428344	+	NlpC	identified by match to protein family HMM PF00877	gene	gene1312	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1314
AHA_1315	AHA_1315		AHA_1315	1428493	1429449	+	conserved hypothetical protein	identified by match to protein family HMM PF05971	gene	gene1313	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1315
AHA_1316	AHA_1316		AHA_1316	1429721	1430440	+	nodulation protein N	identified by match to protein family HMM PF01575	gene	gene1314	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1316
AHA_1317	AHA_1317		AHA_1317	1430588	1431586	-	conserved hypothetical protein		gene	gene1315	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1317
AHA_1318	AHA_1318		AHA_1318	1431614	1432531	-	LysM domain protein	identified by match to protein family HMM PF01476%3B match to protein family HMM PF03734	gene	gene1316	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1318
AHA_1319	AHA_1319		AHA_1319	1432952	1433041	+	tRNA-Ser		tRNA	gene1317	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1319
AHA_1320	AHA_1320		AHA_1320	1433179	1436307	-	putative transporter AmrB	identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915	gene	gene1318	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1320
AHA_1321	AHA_1321		AHA_1321	1436323	1437678	-	acriflavin resistance protein A	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene1319	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1321
AHA_1322	AHA_1322		AHA_1322	1437636	1438364	+	two-component response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1320	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1322
AHA_1323	AHA_1323		AHA_1323	1438361	1439419	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1321	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1323
AHA_1324	AHA_1324		AHA_1324	1439669	1439998	-	quaternary ammonium compound-resistance protein QacE	identified by match to protein family HMM PF00893	gene	gene1322	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1324
AHA_1325	AHA_1325		AHA_1325	1440017	1440430	-	quaternary ammonium compound-resistance protein QacE	identified by match to protein family HMM PF00893	gene	gene1323	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1325
AHA_1326	AHA_1326		AHA_1326	1440450	1441142	-	conserved hypothetical protein		gene	gene1324	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1326
AHA_1327	AHA_1327		AHA_1327	1441154	1441774	-	propanediol utilization	identified by match to protein family HMM PF06130	gene	gene1325	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1327
AHA_1328	AHA_1328		AHA_1328	1441771	1442223	-	bacterial microcompartments protein family	identified by match to protein family HMM PF00936	gene	gene1326	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1328
AHA_1329	AHA_1329		AHA_1329	1442236	1443222	-	benzylsuccinate synthase activating enzyme	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR02494	gene	gene1327	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1329
AHA_1330	AHA_1330		AHA_1330	1443297	1445678	-	pyruvate formate-lyase	identified by similarity to SP:P32674%3B match to protein family HMM PF01228%3B match to protein family HMM PF02901	gene	gene1328	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1330
AHA_1331	AHA_1331		AHA_1331	1446709	1447863	-	alcohol dehydrogenase%2C iron-containing	identified by match to protein family HMM PF00465	gene	gene1329	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1331
AHA_1332	AHA_1332		AHA_1332	1447879	1448136	-	ethanolamine utilization protein EutN/carboxysome structural protein Ccml	identified by match to protein family HMM PF03319	gene	gene1330	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1332
AHA_1333	AHA_1333	eutE	eutE	1448163	1449728	-	acetaldehyde dehydrogenase (acetylating)	identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR02518	gene	gene1331	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1333
AHA_1334	AHA_1334		AHA_1334	1449803	1450081	-	ethanolamine utilization protein	identified by match to protein family HMM PF00936	gene	gene1332	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1334
AHA_1335	AHA_1335		AHA_1335	1450096	1450380	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene1333	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1335
AHA_1336	AHA_1336		AHA_1336	1450397	1450675	-	bacterial microcompartments family protein	identified by match to protein family HMM PF00936	gene	gene1334	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1336
AHA_1337	AHA_1337		AHA_1337	1451360	1451911	-	conserved hypothetical protein		gene	gene1335	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1337
AHA_1338	AHA_1338		AHA_1338	1451875	1452684	-	transcriptional regulatory protein%2C C terminal	identified by match to protein family HMM PF00486	gene	gene1336	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1338
AHA_1339	AHA_1339		AHA_1339	1452706	1453311	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene1337	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1339
AHA_1340	AHA_1340		AHA_1340	1453693	1454607	-	LysR-family transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1338	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1340
AHA_1341	AHA_1341	fdhD-1	fdhD-1	1454723	1455553	+	formate dehydrogenase family accessory protein FdhD	identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129	gene	gene1339	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1341
AHA_1342	AHA_1342		AHA_1342	1455540	1457828	+	oxidoreductase alpha (molybdopterin) subunit	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR01701	gene	gene1340	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1342
AHA_1343	AHA_1343		AHA_1343	1457945	1458020	-	tRNA-Thr		tRNA	gene1341	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1343
AHA_1344	AHA_1344		AHA_1344	1458106	1458846	-	DNA polymerase beta	identified by match to protein family HMM PF02811	gene	gene1342	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1344
AHA_1345	AHA_1345		AHA_1345	1459315	1459968	+	PsrA protein	identified by match to protein family HMM PF00440	gene	gene1343	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1345
AHA_1346	AHA_1346		AHA_1346	1460017	1462341	+	acyl-coenzyme A dehydrogenase	identified by match to protein family HMM PF00441	gene	gene1344	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1346
AHA_1347	AHA_1347		AHA_1347	1462512	1465574	+	AcrB/AcrD/AcrF family protein	identified by match to protein family HMM PF00873	gene	gene1345	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1347
AHA_1348	AHA_1348		AHA_1348	1465590	1466636	+	efflux transporter%2C RND family%2C MFP subunit%2C AcrA/E family%2C putative	identified by match to protein family HMM TIGR01730	gene	gene1346	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1348
AHA_1349	AHA_1349	pyk-2	pyk-2	1466702	1468141	-	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064	gene	gene1347	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1349
AHA_1350	AHA_1350	hexR	hexR	1468305	1469168	-	transcriptional regulator HexR	identified by match to protein family HMM PF01380%3B match to protein family HMM PF01418	gene	gene1348	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1350
AHA_1351	AHA_1351	glk	glk	1469509	1470477	+	glucokinase	identified by match to protein family HMM PF02685%3B match to protein family HMM TIGR00749	gene	gene1349	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1351
AHA_1352	AHA_1352		AHA_1352	1470777	1472135	-	sensor protein PhoQ	identified by match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene1350	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1352
AHA_1353	AHA_1353		AHA_1353	1472159	1472866	-	transcriptional regulatory protein PhoP	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene1351	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1353
AHA_1354	AHA_1354		AHA_1354	1472972	1475131	-	RTX toxin transporter	identified by similarity to GB:AAF94603.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846	gene	gene1352	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1354
AHA_1355	AHA_1355	rtxD	rtxD	1475134	1476498	-	RTX toxin transporter	identified by similarity to GB:AAD21060.1%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01843	gene	gene1353	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1355
AHA_1356	AHA_1356	rtxB	rtxB	1476495	1478582	-	RTX toxin transporter	identified by similarity to GB:AAD21059.1%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR01846	gene	gene1354	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1356
AHA_1357	AHA_1357		AHA_1357	1478891	1479289	+	conserved hypothetical protein		gene	gene1355	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1357
AHA_1358	AHA_1358	rtxC	rtxC	1479322	1479771	+	cytolysin-activating lysine-acyltransferase RtxC	identified by similarity to SP:Q9X4W3%3B match to protein family HMM PF02794	gene	gene1356	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1358
AHA_1359	AHA_1359		AHA_1359	1479789	1493846	+	structural toxin protein RtxA	identified by similarity to GB:AAD21057.1%3B match to protein family HMM PF02018	gene	gene1357	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1359
AHA_1360	AHA_1360		AHA_1360	1494201	1494695	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1358	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1360
AHA_1361	AHA_1361		AHA_1361	1494796	1496124	-	conserved hypothetical protein	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01125	gene	gene1359	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1361
AHA_1362	AHA_1362		AHA_1362	1496176	1497486	+	response regulator	identified by match to protein family HMM PF01966	gene	gene1360	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1362
AHA_1363	AHA_1363		AHA_1363	1497715	1498491	+	conserved hypothetical protein		gene	gene1361	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1363
AHA_1364	AHA_1364	fliE	fliE	1498693	1499010	+	flagellar hook-basal body complex protein FliE	identified by match to protein family HMM PF02049%3B match to protein family HMM TIGR00205	gene	gene1362	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1364
AHA_1365	AHA_1365	fliF	fliF	1499098	1500780	+	flagellar M-ring protein FliF	identified by match to protein family HMM PF01514%3B match to protein family HMM TIGR00206	gene	gene1363	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1365
AHA_1366	AHA_1366	fliG	fliG	1500773	1501834	+	flagellar motor switch protein FliG	identified by match to protein family HMM PF01706%3B match to protein family HMM TIGR00207	gene	gene1364	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1366
AHA_1367	AHA_1367	fliH	fliH	1501899	1502705	+	flagellar assembly protein FliH	identified by match to protein family HMM PF02108	gene	gene1365	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1367
AHA_1368	AHA_1368	fliI	fliI	1502778	1504109	+	flagellar protein export ATPase FliI	identified by match to protein family HMM PF00006%3B match to protein family HMM TIGR01026%3B match to protein family HMM TIGR02545	gene	gene1366	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1368
AHA_1369	AHA_1369	fliJ	fliJ	1504136	1504576	+	flagellar export protein FliJ	identified by match to protein family HMM TIGR02473	gene	gene1367	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1369
AHA_1370	AHA_1370		AHA_1370	1504806	1506689	+	putative flagellar hook-length control protein FliK	identified by similarity to GB:AAC33327.1%3B match to protein family HMM PF02120	gene	gene1368	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1370
AHA_1371	AHA_1371	fliL-2	fliL-2	1506747	1507265	+	flagellar basal body-associated protein FliL	identified by match to protein family HMM PF03748	gene	gene1369	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1371
AHA_1372	AHA_1372	fliM	fliM	1507275	1508345	+	flagellar motor switch protein FliM	identified by match to protein family HMM PF01052%3B match to protein family HMM PF02154%3B match to protein family HMM TIGR01397	gene	gene1370	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1372
AHA_1373	AHA_1373	fliN	fliN	1508397	1508789	+	flagellar motor switch protein FliN	identified by match to protein family HMM PF01052%3B match to protein family HMM TIGR02480	gene	gene1371	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1373
AHA_1374	AHA_1374	fliO	fliO	1508786	1509169	+	flagellar biosynthesis protein%2C FliO	identified by similarity to SP:Q51467%3B match to protein family HMM PF04347	gene	gene1372	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1374
AHA_1375	AHA_1375	fliP	fliP	1509156	1509935	+	flagellar biosynthetic protein FliP	identified by match to protein family HMM PF00813%3B match to protein family HMM TIGR01103	gene	gene1373	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1375
AHA_1376	AHA_1376	fliQ	fliQ	1509963	1510232	+	flagellar biosynthetic protein FliQ	identified by similarity to SP:P34201%3B match to protein family HMM PF01313%3B match to protein family HMM TIGR01402	gene	gene1374	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1376
AHA_1377	AHA_1377	fliR	fliR	1510300	1511091	+	flagellar biosynthetic protein FliR	identified by match to protein family HMM PF01311%3B match to protein family HMM TIGR01400	gene	gene1375	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1377
AHA_1378	AHA_1378	flhB	flhB	1511226	1512356	+	flagellar biosynthetic protein FlhB	identified by similarity to GB:AAN56214.1%3B match to protein family HMM PF01312%3B match to protein family HMM TIGR00328	gene	gene1376	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1378
AHA_1379	AHA_1379	flhA	flhA	1512464	1514566	+	flagellar biosynthesis protein FlhA	identified by match to protein family HMM PF00771%3B match to protein family HMM TIGR01398	gene	gene1377	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1379
AHA_1380	AHA_1380	flhF	flhF	1514583	1516004	+	flagellar biosynthesis protein FlhF	identified by similarity to GB:AAN03365.1%3B match to protein family HMM PF00448	gene	gene1378	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1380
AHA_1381	AHA_1381		AHA_1381	1516012	1516881	+	CobQ/CobB/MinD/ParA family protein	identified by similarity to GB:AAF32413.1%3B match to protein family HMM PF01656	gene	gene1379	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1381
AHA_1382	AHA_1382	fliA	fliA	1516874	1517593	+	RNA polymerase sigma factor for flagellar operon	identified by similarity to SP:P29248%3B match to protein family HMM PF04539%3B match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02479%3B match to protein family HMM TIGR02937	gene	gene1380	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1382
AHA_1383	AHA_1383	cheY	cheY	1517705	1518088	+	chemotaxis protein CheY	identified by similarity to SP:Q51455%3B match to protein family HMM PF00072	gene	gene1381	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1383
AHA_1384	AHA_1384	cheZ	cheZ	1518101	1518841	+	chemotaxis protein CheZ	identified by similarity to SP:Q51434%3B match to protein family HMM PF04344	gene	gene1382	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1384
AHA_1385	AHA_1385	cheA-2	cheA-2	1518853	1521039	+	chemotaxis protein CheA	identified by similarity to GB:AAC08064.1%3B match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895	gene	gene1383	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1385
AHA_1386	AHA_1386	cheB-2	cheB-2	1521072	1522187	+	chemotaxis response regulator protein-glutamate methylesterase	identified by similarity to SP:Q05522%3B match to protein family HMM PF00072%3B match to protein family HMM PF01339	gene	gene1384	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1386
AHA_1387	AHA_1387	motA	motA	1522196	1522927	+	chemotaxis protein MotA	identified by similarity to SP:P28611%3B match to protein family HMM PF01618	gene	gene1385	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1387
AHA_1388	AHA_1388		AHA_1388	1522930	1523856	+	ompA family protein	identified by match to protein family HMM PF00691	gene	gene1386	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1388
AHA_1389	AHA_1389		AHA_1389	1523861	1524655	+	CobQ/CobB/MinD/ParA family protein	identified by match to protein family HMM PF01656	gene	gene1387	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1389
AHA_1390	AHA_1390		AHA_1390	1524652	1525524	+	CheW domain protein	identified by match to protein family HMM PF01584	gene	gene1388	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1390
AHA_1391	AHA_1391	cheW-2	cheW-2	1525594	1526082	+	chemotaxis protein CheW	identified by match to protein family HMM PF01584	gene	gene1389	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1391
AHA_1392	AHA_1392		AHA_1392	1526101	1526487	+	ATPase involved in DNA repair		gene	gene1390	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1392
AHA_1393	AHA_1393	ccmA	ccmA	1526642	1527277	+	heme ABC exporter%2C ATP-binding protein CcmA	identified by similarity to SP:P33931%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01189	gene	gene1391	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1393
AHA_1394	AHA_1394	ccmB	ccmB	1527283	1527951	+	heme exporter protein CcmB	identified by similarity to SP:P33930%3B match to protein family HMM PF03379%3B match to protein family HMM TIGR01190	gene	gene1392	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1394
AHA_1395	AHA_1395	ccmC	ccmC	1528115	1528855	+	heme exporter protein C	identified by similarity to SP:P33929%3B match to protein family HMM PF01578%3B match to protein family HMM TIGR01191	gene	gene1393	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1395
AHA_1396	AHA_1396		AHA_1396	1528858	1529064	+	conserved domain protein	identified by match to protein family HMM PF04995	gene	gene1394	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1396
AHA_1397	AHA_1397	ccmE	ccmE	1529061	1529552	+	cytochrome c-type biogenesis protein CcmE	identified by match to protein family HMM PF03100	gene	gene1395	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1397
AHA_1398	AHA_1398	ccmF-1	ccmF-1	1529635	1531590	+	cytochrome c-type biogenesis protein CcmF	identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR00353	gene	gene1396	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1398
AHA_1399	AHA_1399	dsbE	dsbE	1531587	1532117	+	thiol:disulfide interchange protein DsbE	identified by similarity to SP:P0AA86%3B match to protein family HMM TIGR00385	gene	gene1397	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1399
AHA_1400	AHA_1400		AHA_1400	1532129	1532608	+	cytochrome c-type biogenesis protein CcmH	identified by match to protein family HMM PF03918	gene	gene1398	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1400
AHA_1401	AHA_1401		AHA_1401	1532605	1533879	+	cytochrome c-type biogenesis protein CcmH		gene	gene1399	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1401
AHA_1402	AHA_1402	vacJ	vacJ	1533984	1534772	+	lipoprotein VacJ	identified by match to protein family HMM PF04333	gene	gene1400	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1402
AHA_1403	AHA_1403		AHA_1403	1534899	1535483	-	superoxide dismutase (Fe)	identified by match to protein family HMM PF00081%3B match to protein family HMM PF02777	gene	gene1401	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1403
AHA_1404	AHA_1404		AHA_1404	1535770	1536114	+	putative glutaredoxin homolog	identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR00365	gene	gene1402	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1404
AHA_1405	AHA_1405		AHA_1405	1536192	1537505	-	tRNA and rRNA cytosine-C5-methylase	identified by match to protein family HMM PF01189	gene	gene1403	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1405
AHA_1406	AHA_1406		AHA_1406	1537565	1539595	+	conserved hypothetical protein		gene	gene1404	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1406
AHA_1407	AHA_1407		AHA_1407	1539592	1539915	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1405	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1407
AHA_1408	AHA_1408	pdxH	pdxH	1540087	1540725	+	pyridoxamine 5'-phosphate oxidase	identified by similarity to SP:P28225%3B match to protein family HMM PF01243%3B match to protein family HMM TIGR00558	gene	gene1406	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1408
AHA_1409	AHA_1409		AHA_1409	1540755	1541369	+	glutathione S-transferase family protein	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene1407	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1409
AHA_1410	AHA_1410		AHA_1410	1541369	1542988	+	conserved domain protein		gene	gene1408	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1410
AHA_1411	AHA_1411		AHA_1411	1543021	1543542	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1409	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1411
AHA_1412	AHA_1412		AHA_1412	1543602	1544732	-	cupin superfamily protein	identified by match to protein family HMM PF08007	gene	gene1410	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1412
AHA_1413	AHA_1413	purB	purB	1544898	1546268	-	adenylosuccinate lyase	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00928	gene	gene1411	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1413
AHA_1414	AHA_1414		AHA_1414	1546396	1547010	-	conserved hypothetical protein	identified by match to protein family HMM PF04356	gene	gene1412	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1414
AHA_1415	AHA_1415	trmU	trmU	1547223	1548329	-	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase	identified by match to protein family HMM PF01171%3B match to protein family HMM PF03054%3B match to protein family HMM TIGR00420	gene	gene1413	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1415
AHA_1416	AHA_1416		AHA_1416	1548648	1549115	-	7%2C8-dihydro-8-oxoguanine-triphosphatase	identified by match to protein family HMM PF00293	gene	gene1414	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1416
AHA_1417	AHA_1417		AHA_1417	1549211	1550152	-	ribosomal large subunit pseudouridine synthase E	identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR00093	gene	gene1415	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1417
AHA_1418	AHA_1418		AHA_1418	1550219	1550986	-	fructose specific permease	identified by match to protein family HMM PF00359	gene	gene1416	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1418
AHA_1419	AHA_1419		AHA_1419	1550987	1551292	-	phosphotransferase system enzyme II %2C fructose-specific	identified by match to protein family HMM PF02379%3B match to protein family HMM TIGR00829	gene	gene1417	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1419
AHA_1420	AHA_1420		AHA_1420	1551591	1552997	-	hexose phosphate transport protein	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00881	gene	gene1418	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1420
AHA_1421	AHA_1421		AHA_1421	1553411	1555318	-	pts system%2C fructose-specific iiabc component	identified by match to protein family HMM PF00359%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR00848%3B match to protein family HMM TIGR01427	gene	gene1419	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1421
AHA_1422	AHA_1422		AHA_1422	1557075	1557551	-	IAA acetyltransferase	identified by match to protein family HMM PF00583	gene	gene1420	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1422
AHA_1423	AHA_1423		AHA_1423	1557605	1557880	-	conserved hypothetical protein		gene	gene1421	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1423
AHA_1424	AHA_1424		AHA_1424	1557976	1558440	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene1422	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1424
AHA_1425	AHA_1425		AHA_1425	1558653	1559897	+	FMN-binding oxidoreductase	identified by match to protein family HMM PF00724	gene	gene1423	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1425
AHA_1426	AHA_1426	malI-1	malI-1	1559923	1560960	-	maltose regulon regulatory protein MalI	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene1424	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1426
AHA_1427	AHA_1427	malX	malX	1561236	1562822	+	PTS system%2C maltose and glucose-specific IIBC component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR02004	gene	gene1425	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1427
AHA_1428	AHA_1428		AHA_1428	1562896	1564098	+	protein MalY	identified by match to protein family HMM PF00155	gene	gene1426	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1428
AHA_1429	AHA_1429		AHA_1429	1564126	1564785	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1427	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1429
AHA_1430	AHA_1430		AHA_1430	1564945	1565289	-	conserved hypothetical protein		gene	gene1428	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1430
AHA_1431	AHA_1431		AHA_1431	1565433	1567817	-	pts system%2C fructose-specific iiabc component	identified by match to protein family HMM PF00359%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR00848%3B match to protein family HMM TIGR01427	gene	gene1429	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1431
AHA_1432	AHA_1432		AHA_1432	1568050	1568199	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1430	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1432
AHA_1433	AHA_1433		AHA_1433	1568276	1568974	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1431	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1433
AHA_1434	AHA_1434	manA	manA	1569022	1570221	-	mannose-6-phosphate isomerase%2C class I	identified by match to protein family HMM PF01238%3B match to protein family HMM TIGR00218	gene	gene1432	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1434
AHA_1435	AHA_1435		AHA_1435	1570336	1571226	+	putative HTH-type transcriptional regulator YijO	identified by match to protein family HMM PF00165	gene	gene1433	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1435
AHA_1436	AHA_1436	icd	icd	1571429	1572682	+	isocitrate dehydrogenase%2C NADP-dependent	identified by match to protein family HMM PF00180%3B match to protein family HMM TIGR00183	gene	gene1434	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1436
AHA_1437	AHA_1437		AHA_1437	1572770	1572946	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1435	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1437
AHA_1438	AHA_1438	dsdA	dsdA	1573281	1574612	-	D-serine ammonia-lyase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR02035	gene	gene1436	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1438
AHA_1439	AHA_1439	dsdC	dsdC	1574911	1575870	+	D-serine deaminase transcriptional activator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466%3B match to protein family HMM TIGR02036	gene	gene1437	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1439
AHA_1440	AHA_1440		AHA_1440	1575913	1576578	+	conserved hypothetical protein	identified by similarity to GB:CAG37011.1	gene	gene1438	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1440
AHA_1441	AHA_1441		AHA_1441	1576562	1577623	+	conserved hypothetical protein		gene	gene1439	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1441
AHA_1442	AHA_1442	ssrA	ssrA	1577701	1578060	-			gene	gene1440	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1442
AHA_1443	AHA_1443	smpB	smpB	1578180	1578668	-	SsrA-binding protein	identified by match to protein family HMM PF01668%3B match to protein family HMM TIGR00086	gene	gene1441	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1443
AHA_1444	AHA_1444		AHA_1444	1578838	1579272	+	oligoketide cyclase/lipid transport protein	identified by match to protein family HMM PF03364	gene	gene1442	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1444
AHA_1445	AHA_1445		AHA_1445	1579265	1579612	+	protein YfjF	identified by match to protein family HMM PF03658	gene	gene1443	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1445
AHA_1446	AHA_1446		AHA_1446	1579740	1580375	-	nucleoside-diphosphate-sugar epimerases	identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993	gene	gene1444	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1446
AHA_1447	AHA_1447		AHA_1447	1580500	1580838	-	outer membrane lipoprotein OmlA	identified by match to protein family HMM PF04355	gene	gene1445	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1447
AHA_1448	AHA_1448		AHA_1448	1580959	1581678	-	conserved hypothetical protein	identified by match to protein family HMM PF07603	gene	gene1446	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1448
AHA_1449	AHA_1449		AHA_1449	1581680	1584766	-	conserved hypothetical protein		gene	gene1447	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1449
AHA_1450	AHA_1450		AHA_1450	1584989	1585192	+	Flp/Fap pilin component superfamily	identified by match to protein family HMM PF04964	gene	gene1448	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1450
AHA_1451	AHA_1451		AHA_1451	1585189	1585605	+	leader peptidase PilD	identified by match to protein family HMM PF01478	gene	gene1449	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1451
AHA_1452	AHA_1452		AHA_1452	1585615	1586505	+	Flp pilus assembly protein CpaB	identified by match to protein family HMM PF06981	gene	gene1450	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1452
AHA_1453	AHA_1453		AHA_1453	1586525	1587922	+	protein transporter%2C outer bacterial membrane secretin (secretin) family	identified by match to protein family HMM PF00263	gene	gene1451	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1453
AHA_1454	AHA_1454		AHA_1454	1587934	1588482	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1452	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1454
AHA_1455	AHA_1455		AHA_1455	1588486	1589619	+	conserved hypothetical protein		gene	gene1453	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1455
AHA_1456	AHA_1456		AHA_1456	1589619	1590932	+	CpaF	identified by match to protein family HMM PF00437	gene	gene1454	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1456
AHA_1457	AHA_1457		AHA_1457	1590929	1591813	+	Flp pilus assembly protein TadB	identified by match to protein family HMM PF00482	gene	gene1455	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1457
AHA_1458	AHA_1458		AHA_1458	1591817	1592701	+	Flp pilus assembly protein TadC	identified by match to protein family HMM PF00482	gene	gene1456	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1458
AHA_1459	AHA_1459		AHA_1459	1592721	1593485	+	Flp pilus assembly protein TadD		gene	gene1457	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1459
AHA_1460	AHA_1460		AHA_1460	1593482	1593955	+	conserved hypothetical protein	identified by match to protein family HMM PF07811	gene	gene1458	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1460
AHA_1461	AHA_1461		AHA_1461	1593952	1594458	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1459	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1461
AHA_1462	AHA_1462		AHA_1462	1594459	1595841	+	conserved hypothetical protein		gene	gene1460	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1462
AHA_1463	AHA_1463		AHA_1463	1595906	1597057	-	1%2C3-propanediol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene1461	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1463
AHA_1464	AHA_1464	udp	udp	1597450	1598205	+	uridine phosphorylase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01718	gene	gene1462	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1464
AHA_1465	AHA_1465		AHA_1465	1598323	1599054	-	ribosomal large subunit pseudouridine synthase A	identified by match to protein family HMM PF00849	gene	gene1463	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1465
AHA_1466	AHA_1466		AHA_1466	1599239	1600174	+	inosine-uridine preferring nucleoside hydrolase superfamily	identified by match to protein family HMM PF01156	gene	gene1464	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1466
AHA_1467	AHA_1467		AHA_1467	1600209	1600679	+	conserved hypothetical protein		gene	gene1465	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1467
AHA_1468	AHA_1468		AHA_1468	1600816	1601112	-	conserved hypothetical protein		gene	gene1466	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1468
AHA_1469	AHA_1469		AHA_1469	1601141	1601710	-	conserved hypothetical protein	identified by match to protein family HMM PF07509	gene	gene1467	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1469
AHA_1470	AHA_1470		AHA_1470	1601850	1603472	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1468	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1470
AHA_1471	AHA_1471		AHA_1471	1603637	1604269	+	transporter%2C LysE family	identified by match to protein family HMM PF01810	gene	gene1469	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1471
AHA_1472	AHA_1472		AHA_1472	1604519	1605307	+	conserved hypothetical protein	identified by match to protein family HMM PF07313	gene	gene1470	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1472
AHA_1473	AHA_1473		AHA_1473	1605429	1606637	-	Na(+)/H(+) antiporter	identified by match to protein family HMM PF00999	gene	gene1471	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1473
AHA_1474	AHA_1474		AHA_1474	1606672	1607775	-	hyaluronidase%2C putative	identified by match to protein family HMM PF07555	gene	gene1472	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1474
AHA_1475	AHA_1475	cvrA	cvrA	1607818	1609545	-	cell volume regulation protein A	identified by similarity to SP:P76007%3B match to protein family HMM PF00999%3B match to protein family HMM PF02080%3B match to protein family HMM PF03471	gene	gene1473	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1475
AHA_1476	AHA_1476		AHA_1476	1609788	1609934	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1474	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1476
AHA_1477	AHA_1477		AHA_1477	1609931	1610620	-	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF02557	gene	gene1475	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1477
AHA_1478	AHA_1478	dapE	dapE	1610617	1611744	-	succinyl-diaminopimelate desuccinylase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01246	gene	gene1476	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1478
AHA_1479	AHA_1479		AHA_1479	1611767	1612516	-	arsenate reductase	identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR01617	gene	gene1477	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1479
AHA_1480	AHA_1480		AHA_1480	1612312	1613223	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1478	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1480
AHA_1481	AHA_1481		AHA_1481	1613540	1613911	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1479	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1481
AHA_1482	AHA_1482		AHA_1482	1614141	1615517	+	transporter%2C anaerobic C4-dicarboxylate uptake C (DcuC) family	identified by similarity to SP:P45428%3B match to protein family HMM PF03606%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00771	gene	gene1480	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1482
AHA_1483	AHA_1483		AHA_1483	1615602	1616741	+	carboxypeptidase G2	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene1481	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1483
AHA_1484	AHA_1484		AHA_1484	1616833	1617489	-	domain of unknown function%2C putative	identified by match to protein family HMM PF01902	gene	gene1482	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1484
AHA_1485	AHA_1485	dcuB	dcuB	1617625	1618968	-	anaerobic C4-dicarboxylate transporter DcuB	identified by similarity to SP:P14409%3B match to protein family HMM PF03605%3B match to protein family HMM TIGR00770	gene	gene1483	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1485
AHA_1486	AHA_1486	asnS	asnS	1619345	1620745	-	asparaginyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00457	gene	gene1484	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1486
AHA_1487	AHA_1487		AHA_1487	1621286	1622119	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00672	gene	gene1485	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1487
AHA_1488	AHA_1488	bioA	bioA	1622255	1623718	-	adenosylmethionine-8-amino-7-oxononanoate transaminase	identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00508	gene	gene1486	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1488
AHA_1489	AHA_1489	bioB	bioB	1623721	1624809	+	biotin synthase	identified by match to protein family HMM PF04055%3B match to protein family HMM PF06968%3B match to protein family HMM TIGR00433	gene	gene1487	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1489
AHA_1490	AHA_1490	bioF	bioF	1624806	1626002	+	8-amino-7-oxononanoate synthase	identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR00858	gene	gene1488	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1490
AHA_1491	AHA_1491	bioC	bioC	1625992	1626795	+	biotin biosynthesis protein BioC	identified by match to protein family HMM PF01209%3B match to protein family HMM TIGR02072	gene	gene1489	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1491
AHA_1492	AHA_1492	bioD	bioD	1626878	1627558	+	dethiobiotin synthase	identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR00347	gene	gene1490	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1492
AHA_1493	AHA_1493	htpX	htpX	1627671	1628543	+	M48B family peptidase HtpX	identified by match to protein family HMM PF01435%3B match to protein family HMM PF06509	gene	gene1491	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1493
AHA_1494	AHA_1494		AHA_1494	1628605	1630317	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015	gene	gene1492	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1494
AHA_1495	AHA_1495		AHA_1495	1630540	1632528	-	flavodoxin reductase family 1 protein	identified by match to protein family HMM PF00111%3B match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM PF03473%3B match to protein family HMM PF03476	gene	gene1493	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1495
AHA_1496	AHA_1496		AHA_1496	1632745	1634391	+	pyridine nucleotide-disulphide oxidoreductase family protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene1494	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1496
AHA_1497	AHA_1497	nifJ-1	nifJ-1	1634388	1637963	+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176	gene	gene1495	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1497
AHA_1498	AHA_1498		AHA_1498	1639784	1639999	-	conserved hypothetical protein	identified by match to protein family HMM PF04325	gene	gene1496	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1498
AHA_1499	AHA_1499		AHA_1499	1640286	1640876	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1497	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1499
AHA_1500	AHA_1500		AHA_1500	1640888	1642234	-	Na+ driven multidrug efflux pump	identified by match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene1498	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1500
AHA_1501	AHA_1501		AHA_1501	1642381	1644204	-	sulfate permease family protein	identified by match to protein family HMM PF00916%3B match to protein family HMM PF01740	gene	gene1499	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1501
AHA_1502	AHA_1502		AHA_1502	1644275	1644895	-	conserved hypothetical protein	identified by match to protein family HMM PF06042	gene	gene1500	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1502
AHA_1503	AHA_1503		AHA_1503	1644885	1645142	-	conserved hypothetical protein		gene	gene1501	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1503
AHA_1504	AHA_1504	cysM	cysM	1645277	1646182	+	cysteine synthase B	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01138	gene	gene1502	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1504
AHA_1505	AHA_1505		AHA_1505	1646348	1646629	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1503	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1505
AHA_1506	AHA_1506		AHA_1506	1646663	1647847	-	NAD-dependent methanol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene1504	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1506
AHA_1507	AHA_1507		AHA_1507	1647865	1648380	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1505	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1507
AHA_1508	AHA_1508		AHA_1508	1648361	1648963	-	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene1506	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1508
AHA_1509	AHA_1509		AHA_1509	1648974	1650404	-	coniferyl aldehyde dehydrogenase	identified by match to protein family HMM PF00171	gene	gene1507	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1509
AHA_1510	AHA_1510		AHA_1510	1650616	1650909	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1508	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1510
AHA_1511	AHA_1511		AHA_1511	1650968	1651417	-	NlpC	identified by match to protein family HMM PF00877	gene	gene1509	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1511
AHA_1512	AHA_1512		AHA_1512	1652272	1654137	+	hemolysin	identified by match to protein family HMM PF00652%3B match to protein family HMM PF07968	gene	gene1510	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1512
AHA_1513	AHA_1513		AHA_1513	1654204	1655112	-	hydrogen peroxide-inducible genes activator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1511	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1513
AHA_1514	AHA_1514		AHA_1514	1655259	1655861	+	alkyl hydroperoxide reductase TsaA	identified by match to protein family HMM PF00578	gene	gene1512	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1514
AHA_1515	AHA_1515		AHA_1515	1655981	1656946	-	putative alpha-L-glutamate ligase homolog	identified by match to protein family HMM TIGR02291	gene	gene1513	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1515
AHA_1516	AHA_1516		AHA_1516	1656950	1658488	-	gonadoliberin III-related protein		gene	gene1514	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1516
AHA_1517	AHA_1517		AHA_1517	1658492	1659208	-	ATP-dependent Zn proteases	identified by match to protein family HMM PF05618	gene	gene1515	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1517
AHA_1518	AHA_1518		AHA_1518	1659333	1660364	-	methyltransferase%2C putative	identified by match to protein family HMM PF08003%3B match to protein family HMM TIGR00452	gene	gene1516	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1518
AHA_1519	AHA_1519		AHA_1519	1660307	1661056	-	putative methyltransferase	identified by match to protein family HMM TIGR00740	gene	gene1517	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1519
AHA_1520	AHA_1520		AHA_1520	1661450	1662298	-	protein of unknown function	identified by match to protein family HMM PF01904	gene	gene1518	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1520
AHA_1521	AHA_1521	aspS	aspS	1662491	1664497	+	aspartyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF00587%3B match to protein family HMM PF01336%3B match to protein family HMM PF02938%3B match to protein family HMM TIGR00459	gene	gene1519	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1521
AHA_1522	AHA_1522		AHA_1522	1664593	1665333	+	conserved hypothetical protein	identified by match to protein family HMM PF01709%3B match to protein family HMM TIGR01033	gene	gene1520	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1522
AHA_1523	AHA_1523		AHA_1523	1665616	1667232	+	integral membrane protein	identified by match to protein family HMM PF00884%3B match to protein family HMM PF08019	gene	gene1521	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1523
AHA_1524	AHA_1524	nagC	nagC	1667470	1668747	-	N-acetylglucosamine repressor	identified by similarity to SP:P15301%3B match to protein family HMM PF00480	gene	gene1522	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1524
AHA_1525	AHA_1525	nagA-2	nagA-2	1668689	1669834	-	N-acetylglucosamine-6-phosphate deacetylase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00221	gene	gene1523	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1525
AHA_1526	AHA_1526	nagB	nagB	1669844	1670644	-	glucosamine-6-phosphate isomerase	identified by match to protein family HMM PF01182%3B match to protein family HMM TIGR00502	gene	gene1524	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1526
AHA_1527	AHA_1527	nagE	nagE	1670918	1672372	+	pts system%2C N-acetylglucosamine-specific iibc component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01998	gene	gene1525	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1527
AHA_1528	AHA_1528		AHA_1528	1672495	1675158	+	chitobiase	identified by match to protein family HMM PF00728%3B match to protein family HMM PF03173%3B match to protein family HMM PF03174	gene	gene1526	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1528
AHA_1529	AHA_1529	glnS	glnS	1675508	1677169	+	glutaminyl-tRNA synthetase	identified by match to protein family HMM PF00749%3B match to protein family HMM PF03950%3B match to protein family HMM TIGR00440	gene	gene1527	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1529
AHA_1530	AHA_1530	fur	fur	1677303	1677731	-	ferric uptake regulation protein	identified by similarity to SP:P0A9A9%3B match to protein family HMM PF01475	gene	gene1528	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1530
AHA_1531	AHA_1531		AHA_1531	1677967	1678458	+	conserved hypothetical protein		gene	gene1529	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1531
AHA_1532	AHA_1532		AHA_1532	1678519	1679043	-	flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01752	gene	gene1530	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1532
AHA_1533	AHA_1533		AHA_1533	1679083	1679379	-	conserved helix-turn-helix protein		gene	gene1531	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1533
AHA_1534	AHA_1534		AHA_1534	1679400	1679621	-	conserved hypothetical protein		gene	gene1532	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1534
AHA_1535	AHA_1535		AHA_1535	1679677	1680447	-	esterase YbfF	identified by match to protein family HMM PF00561%3B match to protein family HMM PF07819	gene	gene1533	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1535
AHA_1536	AHA_1536		AHA_1536	1680556	1681248	+	SeqA protein	identified by match to protein family HMM PF03925	gene	gene1534	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1536
AHA_1537	AHA_1537	pgm	pgm	1681306	1682955	+	phosphoglucomutase%2C alpha-D-glucose phosphate-specific	identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01132	gene	gene1535	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1537
AHA_1538	AHA_1538		AHA_1538	1683040	1683921	-	transporter%2C 10 TMS drug/metabolite exporter (DME) family	identified by match to protein family HMM PF00892	gene	gene1536	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1538
AHA_1539	AHA_1539		AHA_1539	1684018	1684500	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene1537	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1539
AHA_1540	AHA_1540		AHA_1540	1684525	1685235	-	transcriptional regulator%2C TetR family protein	identified by match to protein family HMM PF00440	gene	gene1538	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1540
AHA_1541	AHA_1541		AHA_1541	1685228	1685893	+	AhpC/Tsa family protein	identified by match to protein family HMM PF00578	gene	gene1539	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1541
AHA_1542	AHA_1542	mltB-1	mltB-1	1685971	1687074	-	lytic murein transglycosylase B	identified by match to protein family HMM TIGR02282	gene	gene1540	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1542
AHA_1543	AHA_1543		AHA_1543	1687170	1687772	-	phosphatidylglycerophosphate synthase	identified by match to protein family HMM PF01066	gene	gene1541	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1543
AHA_1544	AHA_1544		AHA_1544	1687787	1688425	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1542	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1544
AHA_1545	AHA_1545		AHA_1545	1688449	1690125	-	inner membrane ABC transporter permease protein YnjC		gene	gene1543	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1545
AHA_1546	AHA_1546		AHA_1546	1690125	1691405	-	ABC transporter substrate-binding protein		gene	gene1544	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1546
AHA_1547	AHA_1547		AHA_1547	1691315	1693483	-	mercuric reductase%2C membrane-associated	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene1545	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1547
AHA_1548	AHA_1548	pcaC	pcaC	1693483	1694064	-	4-carboxymuconolactone decarboxylase domain protein	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene1546	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1548
AHA_1549	AHA_1549		AHA_1549	1694076	1694750	-	conserved hypothetical protein		gene	gene1547	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1549
AHA_1550	AHA_1550		AHA_1550	1694802	1695362	+	peptide methionine sulfoxide reductase MsrA	identified by match to protein family HMM PF01625	gene	gene1548	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1550
AHA_1551	AHA_1551		AHA_1551	1695377	1695655	-	peptidyl-prolyl cis-trans isomerase C	identified by match to protein family HMM PF00639	gene	gene1549	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1551
AHA_1552	AHA_1552		AHA_1552	1695737	1696111	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1550	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1552
AHA_1553	AHA_1553		AHA_1553	1696686	1698461	+	outer membrane protein%2C OMP85 family	identified by match to protein family HMM PF01103	gene	gene1551	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1553
AHA_1554	AHA_1554		AHA_1554	1698541	1702296	+	putative exported protein	identified by match to protein family HMM PF04357	gene	gene1552	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1554
AHA_1555	AHA_1555		AHA_1555	1702438	1702522	-	tRNA-Tyr		tRNA	gene1553	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1555
AHA_1556	AHA_1556		AHA_1556	1702574	1702658	-	tRNA-Tyr		tRNA	gene1554	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1556
AHA_1557	AHA_1557		AHA_1557	1702784	1703299	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1555	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1557
AHA_1558	AHA_1558	yfiA-1	yfiA-1	1703381	1703719	-	ribosomal subunit interface protein	identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741	gene	gene1556	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1558
AHA_1559	AHA_1559		AHA_1559	1704091	1706607	+	MorA	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1557	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1559
AHA_1560	AHA_1560	slt	slt	1706692	1708608	+	soluble lytic murein transglycosylase	identified by similarity to SP:P03810%3B match to protein family HMM PF01464	gene	gene1558	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1560
AHA_1561	AHA_1561		AHA_1561	1708788	1709786	+	HTH-type transcriptional regulator GalR	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene1559	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1561
AHA_1562	AHA_1562		AHA_1562	1710045	1710857	+	NAD dependent epimerase/dehydratase family protein	identified by match to protein family HMM PF01370	gene	gene1560	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1562
AHA_1563	AHA_1563		AHA_1563	1710900	1711382	+	acyl-CoA thioester hydrolase YciA	identified by match to protein family HMM PF03061	gene	gene1561	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1563
AHA_1564	AHA_1564		AHA_1564	1711389	1711679	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1562	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1564
AHA_1565	AHA_1565		AHA_1565	1711725	1712570	+	endonuclease/exonuclease/phosphatase family	identified by match to protein family HMM PF03372	gene	gene1563	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1565
AHA_1566	AHA_1566		AHA_1566	1712657	1714204	-	membrane-bound lytic murein transglycosylase D	identified by match to protein family HMM PF01464%3B match to protein family HMM PF01476%3B match to protein family HMM PF06474	gene	gene1564	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1566
AHA_1567	AHA_1567		AHA_1567	1714275	1715039	-	probable hydroxyacylglutathione hydrolase	identified by match to protein family HMM PF00753	gene	gene1565	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1567
AHA_1568	AHA_1568	rnhA	rnhA	1715821	1716285	-	RNase H	identified by match to protein family HMM PF00075	gene	gene1567	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1568
AHA_1569	AHA_1569		AHA_1569	1715099	1715833	+	methyltransferase		gene	gene1566	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1569
AHA_1570	AHA_1570	dnaQ	dnaQ	1716338	1717072	+	DNA polymerase III%2C epsilon subunit	identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR00573%3B match to protein family HMM TIGR01406	gene	gene1568	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1570
AHA_1571	AHA_1571		AHA_1571	1717069	1718334	+	conserved hypothetical protein		gene	gene1569	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1571
AHA_1572	AHA_1572		AHA_1572	1718416	1719933	-	HD domain protein	identified by match to protein family HMM PF01966	gene	gene1570	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1572
AHA_1573	AHA_1573		AHA_1573	1720100	1722556	-	acyl-coenzyme A dehydrogenase	identified by match to protein family HMM PF00441	gene	gene1571	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1573
AHA_1574	AHA_1574	gmhA-1	gmhA-1	1722801	1723379	+	phosphoheptose isomerase	identified by match to protein family HMM TIGR00441	gene	gene1572	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1574
AHA_1575	AHA_1575		AHA_1575	1723519	1724298	+	glutamine amidotransferases class-II	identified by match to protein family HMM PF00310	gene	gene1573	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1575
AHA_1576	AHA_1576		AHA_1576	1724620	1724955	+	Hpt domain%2C putative	identified by match to protein family HMM PF01627	gene	gene1574	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1576
AHA_1577	AHA_1577		AHA_1577	1725007	1725918	-	conserved hypothetical protein	identified by match to protein family HMM PF01933%3B match to protein family HMM TIGR01826	gene	gene1575	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1577
AHA_1578	AHA_1578		AHA_1578	1726032	1727216	+	conserved hypothetical protein		gene	gene1576	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1578
AHA_1579	AHA_1579		AHA_1579	1727358	1729331	+	sensor protein LuxQ	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene1577	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1579
AHA_1580	AHA_1580		AHA_1580	1729559	1730134	-	ATP-dependent protease La (LON) domain protein	identified by match to protein family HMM PF02190	gene	gene1578	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1580
AHA_1581	AHA_1581		AHA_1581	1730239	1730877	-	DNA-binding response regulator%2C LuxR family	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196%3B match to protein family HMM PF04545	gene	gene1579	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1581
AHA_1582	AHA_1582	narQ	narQ	1730877	1732589	-	nitrate/nitrite sensor histidine kinase NarQ	identified by similarity to SP:P27896%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518%3B match to protein family HMM PF07730	gene	gene1580	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1582
AHA_1583	AHA_1583	moaA	moaA	1732763	1733791	+	molybdenum cofactor biosynthesis protein A	identified by similarity to SP:P30745%3B match to protein family HMM PF04055%3B match to protein family HMM PF06463%3B match to protein family HMM TIGR02666	gene	gene1581	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1583
AHA_1584	AHA_1584	napF	napF	1734041	1734550	+	ferredoxin-type protein NapF	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00402	gene	gene1582	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1584
AHA_1585	AHA_1585	napD	napD	1734580	1734843	+	NapD protein	identified by match to protein family HMM PF03927	gene	gene1583	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1585
AHA_1586	AHA_1586	napA	napA	1734992	1737481	+	periplasmic nitrate reductase%2C large subunit	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409%3B match to protein family HMM TIGR01706	gene	gene1584	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1586
AHA_1587	AHA_1587		AHA_1587	1737498	1738232	+	MauM/NapG ferredoxin-type protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00397	gene	gene1585	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1587
AHA_1588	AHA_1588		AHA_1588	1738229	1739104	+	ferredoxin-type protein NapH	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02163	gene	gene1586	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1588
AHA_1589	AHA_1589	napB	napB	1739104	1739559	+	periplasmiC nitrate reductase%2C diheme cytochrome c subunit	identified by match to protein family HMM PF03892	gene	gene1587	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1589
AHA_1590	AHA_1590		AHA_1590	1739571	1740161	+	cytochrome c-type protein NapC	identified by match to protein family HMM PF03264%3B match to protein family HMM TIGR02161	gene	gene1588	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1590
AHA_1591	AHA_1591	moaB	moaB	1740424	1740930	+	molybdenum cofactor biosynthesis protein B	identified by match to protein family HMM PF00994%3B match to protein family HMM TIGR00177%3B match to protein family HMM TIGR02667	gene	gene1589	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1591
AHA_1592	AHA_1592	moaC	moaC	1740940	1741464	+	molybdenum cofactor biosynthesis protein C	identified by similarity to SP:P0A738%3B match to protein family HMM PF01967%3B match to protein family HMM TIGR00581	gene	gene1590	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1592
AHA_1593	AHA_1593	moaD	moaD	1741461	1741706	+	molybdopterin converting factor%2C subunit 1	identified by similarity to SP:P30748%3B match to protein family HMM PF02597%3B match to protein family HMM TIGR01682	gene	gene1591	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1593
AHA_1594	AHA_1594	moaE	moaE	1741709	1742182	+	molybdopterin converting factor%2C subunit 2	identified by similarity to SP:P30749%3B match to protein family HMM PF02391	gene	gene1592	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1594
AHA_1595	AHA_1595	modA	modA	1742285	1743013	+	molybdate ABC transporter%2C periplasmic molybdate-binding protein	identified by match to protein family HMM PF01547%3B match to protein family HMM TIGR01256	gene	gene1593	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1595
AHA_1596	AHA_1596	modB	modB	1743237	1743917	+	molybdate ABC transporter%2C permease protein	identified by similarity to SP:P37731%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR02141	gene	gene1594	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1596
AHA_1597	AHA_1597	modC	modC	1743914	1744990	+	molybdate ABC transporter%2C ATP-binding protein	identified by similarity to SP:P37732%3B match to protein family HMM PF00005%3B match to protein family HMM PF03459%3B match to protein family HMM TIGR02142	gene	gene1595	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1597
AHA_1598	AHA_1598		AHA_1598	1745073	1745831	+	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene1596	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1598
AHA_1599	AHA_1599	moeB	moeB	1745917	1746672	-	molybdopterin synthase sulfurylase MoeB	identified by similarity to SP:P12282%3B match to protein family HMM PF00899%3B match to protein family HMM PF05237%3B match to protein family HMM TIGR02355	gene	gene1597	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1599
AHA_1600	AHA_1600		AHA_1600	1746669	1747895	-	molybdopterin biosynthesis protein MoeA	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00177	gene	gene1598	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1600
AHA_1601	AHA_1601	folE	folE	1748201	1748857	+	GTP cyclohydrolase I	identified by match to protein family HMM PF01227%3B match to protein family HMM TIGR00063	gene	gene1599	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1601
AHA_1602	AHA_1602		AHA_1602	1749269	1750924	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1600	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1602
AHA_1603	AHA_1603		AHA_1603	1751058	1751171	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1601	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1603
AHA_1604	AHA_1604	fhs	fhs	1751175	1752905	-	formate--tetrahydrofolate ligase	identified by match to protein family HMM PF01268	gene	gene1602	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1604
AHA_1605	AHA_1605		AHA_1605	1752972	1753388	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1603	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1605
AHA_1606	AHA_1606		AHA_1606	1753420	1754322	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1604	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1606
AHA_1607	AHA_1607		AHA_1607	1754433	1754993	+	small protease	identified by match to protein family HMM PF04264	gene	gene1605	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1607
AHA_1608	AHA_1608		AHA_1608	1754993	1755730	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1606	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1608
AHA_1609	AHA_1609		AHA_1609	1755917	1757038	+	S-adenosyl-L-homocysteine hydrolase%2C NAD binding domain%2C putative	identified by match to protein family HMM PF00670	gene	gene1607	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1609
AHA_1610	AHA_1610		AHA_1610	1757076	1757387	+	SelT/selW/selH domain	identified by match to protein family HMM PF05169%3B match to protein family HMM TIGR02174	gene	gene1608	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1610
AHA_1611	AHA_1611		AHA_1611	1757450	1759174	-	phosphate acyltransferase family protein	identified by match to protein family HMM PF01553	gene	gene1609	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1611
AHA_1612	AHA_1612	pepT	pepT	1759317	1760540	-	peptidase T	identified by similarity to SP:P26311%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01882	gene	gene1610	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1612
AHA_1613	AHA_1613	speA	speA	1761608	1763509	+	arginine decarboxylase	identified by match to protein family HMM PF00278%3B match to protein family HMM PF02784%3B match to protein family HMM TIGR01273	gene	gene1611	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1613
AHA_1614	AHA_1614		AHA_1614	1763792	1763980	+	conserved hypothetical protein		gene	gene1612	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1614
AHA_1615	AHA_1615		AHA_1615	1764129	1764446	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1613	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1615
AHA_1616	AHA_1616		AHA_1616	1764617	1766773	-	methyl-accepting chemotaxis protein (MCP) signaling domain	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1614	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1616
AHA_1617	AHA_1617		AHA_1617	1766813	1768171	-	inner membrane transport protein YhaO		gene	gene1615	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1617
AHA_1618	AHA_1618		AHA_1618	1768357	1768740	+	endoribonuclease L-PSP%2C putative	identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004	gene	gene1616	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1618
AHA_1619	AHA_1619		AHA_1619	1768763	1770052	+	conserved hypothetical protein	identified by match to protein family HMM PF06354	gene	gene1617	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1619
AHA_1620	AHA_1620		AHA_1620	1770111	1770764	+	MukF protein		gene	gene1618	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1620
AHA_1621	AHA_1621		AHA_1621	1770909	1771496	+	fructose-2%3B6-bisphosphatase	identified by match to protein family HMM PF00300	gene	gene1619	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1621
AHA_1622	AHA_1622		AHA_1622	1771555	1772295	-	probable 5-methylcytosine-specific restriction enzyme A	identified by match to protein family HMM PF01844	gene	gene1620	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1622
AHA_1623	AHA_1623		AHA_1623	1772489	1772956	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1621	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1623
AHA_1624	AHA_1624		AHA_1624	1773110	1773478	+	lactoylglutathione lyase family protein	identified by match to protein family HMM PF00903	gene	gene1622	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1624
AHA_1625	AHA_1625		AHA_1625	1773602	1775185	-	putative membrane protein		gene	gene1623	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1625
AHA_1626	AHA_1626		AHA_1626	1775383	1776729	-	NADP-specific glutamate dehydrogenase	identified by match to protein family HMM PF00208%3B match to protein family HMM PF02812	gene	gene1624	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1626
AHA_1627	AHA_1627		AHA_1627	1777267	1777359	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1625	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1627
AHA_1628	AHA_1628		AHA_1628	1777349	1778383	+	ribosomal large subunit pseudouridine synthase F	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene1626	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1628
AHA_1629	AHA_1629		AHA_1629	1778456	1779691	-	cyanate transport protein CynX	identified by match to protein family HMM PF07690	gene	gene1627	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1629
AHA_1630	AHA_1630		AHA_1630	1779684	1780187	-	cytidine/deoxycytidylate deaminase%2C zinc-binding region	identified by match to protein family HMM PF00383	gene	gene1628	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1630
AHA_1631	AHA_1631		AHA_1631	1780298	1781146	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1629	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1631
AHA_1632	AHA_1632		AHA_1632	1781169	1782368	-	probable MFS transporter	identified by match to protein family HMM PF07690	gene	gene1630	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1632
AHA_1633	AHA_1633		AHA_1633	1782480	1782947	-	transcriptional regulatory protein	identified by match to protein family HMM PF06445	gene	gene1631	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1633
AHA_1634	AHA_1634		AHA_1634	1782988	1783143	-	conserved hypothetical protein		gene	gene1632	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1634
AHA_1635	AHA_1635		AHA_1635	1783225	1783695	-	cytosolic long-chain acyl-CoA thioester hydrolase family protein	identified by match to protein family HMM PF03061	gene	gene1633	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1635
AHA_1636	AHA_1636		AHA_1636	1783716	1784027	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1634	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1636
AHA_1637	AHA_1637		AHA_1637	1784170	1784829	+	inner membrane protein YebE	identified by match to protein family HMM PF04391	gene	gene1635	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1637
AHA_1638	AHA_1638		AHA_1638	1784965	1785483	+	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene1636	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1638
AHA_1639	AHA_1639		AHA_1639	1785524	1786963	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene1637	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1639
AHA_1640	AHA_1640		AHA_1640	1787084	1788655	+	cytochrome D ubiquinol oxidase subunit I	identified by match to protein family HMM PF01654	gene	gene1638	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1640
AHA_1641	AHA_1641	cydB-1	cydB-1	1788655	1789782	+	cytochrome D ubiquinol oxidase%2C subunit II	identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203	gene	gene1639	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1641
AHA_1642	AHA_1642		AHA_1642	1789810	1789923	+	cyd operon protein YbgT	identified by match to protein family HMM TIGR02106	gene	gene1640	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1642
AHA_1643	AHA_1643		AHA_1643	1789986	1791158	-	transporter%2C major facilitator family	identified by match to protein family HMM PF07690	gene	gene1641	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1643
AHA_1644	AHA_1644		AHA_1644	1791533	1792336	-	2%2C5-diketo-D-gluconic acid reductase B	identified by match to protein family HMM PF00248	gene	gene1642	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1644
AHA_1645	AHA_1645		AHA_1645	1792384	1792680	-	antibiotic biosynthesis monooxygenase family protein	identified by match to protein family HMM PF03992	gene	gene1643	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1645
AHA_1646	AHA_1646		AHA_1646	1792858	1793220	-	glyoxalase/dioxygenase superfamily protein	identified by match to protein family HMM PF00903	gene	gene1644	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1646
AHA_1647	AHA_1647		AHA_1647	1793800	1794702	+	putative HTH-type transcriptional regulator YafC	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1645	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1647
AHA_1648	AHA_1648	glpK	glpK	1794869	1796371	-	glycerol kinase	identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01311	gene	gene1646	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1648
AHA_1649	AHA_1649	glpF	glpF	1796426	1797274	-	glycerol uptake facilitator protein	identified by similarity to SP:P11244%3B match to protein family HMM PF00230%3B match to protein family HMM TIGR00861	gene	gene1647	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1649
AHA_1650	AHA_1650	glpT	glpT	1797762	1799117	+	glycerol-3-phosphate transporter	identified by similarity to SP:P08194%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00712%3B match to protein family HMM TIGR00881	gene	gene1648	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1650
AHA_1651	AHA_1651	glpR	glpR	1799219	1799977	+	glycerol-3-phosphate regulon repressor	identified by similarity to SP:P09392%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220	gene	gene1649	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1651
AHA_1652	AHA_1652		AHA_1652	1800299	1801786	+	aerobic glycerol-3-phosphate dehydrogenase	identified by match to protein family HMM PF01266	gene	gene1650	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1652
AHA_1653	AHA_1653		AHA_1653	1801889	1802968	+	glycerophosphoryl diester phosphodiesterase	identified by match to protein family HMM PF03009	gene	gene1651	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1653
AHA_1654	AHA_1654		AHA_1654	1803287	1804360	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR00034	gene	gene1652	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1654
AHA_1655	AHA_1655	tyrA	tyrA	1804479	1805618	+	chorismate mutase/prephenate dehydrogenase	identified by match to protein family HMM PF01817%3B match to protein family HMM PF02153%3B match to protein family HMM TIGR01799	gene	gene1653	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1655
AHA_1656	AHA_1656		AHA_1656	1805691	1806566	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1654	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1656
AHA_1657	AHA_1657		AHA_1657	1806566	1807081	-	conserved hypothetical protein		gene	gene1655	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1657
AHA_1658	AHA_1658		AHA_1658	1807231	1807821	-	ecotin	identified by match to protein family HMM PF03974	gene	gene1656	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1658
AHA_1659	AHA_1659		AHA_1659	1807945	1808502	-	conserved hypothetical protein	identified by match to protein family HMM PF07603	gene	gene1657	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1659
AHA_1660	AHA_1660		AHA_1660	1808499	1809872	-	conserved hypothetical protein		gene	gene1658	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1660
AHA_1661	AHA_1661		AHA_1661	1809932	1812346	-	proprotein convertase P-domain	identified by match to protein family HMM PF01483	gene	gene1659	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1661
AHA_1662	AHA_1662		AHA_1662	1812379	1814457	-	protease II	identified by match to protein family HMM PF00326%3B match to protein family HMM PF02897	gene	gene1660	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1662
AHA_1663	AHA_1663		AHA_1663	1814457	1816619	-	hemin receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01785%3B match to protein family HMM TIGR01786	gene	gene1661	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1663
AHA_1664	AHA_1664		AHA_1664	1816926	1818776	-	putative sulfatase	identified by match to protein family HMM PF00884	gene	gene1662	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1664
AHA_1665	AHA_1665		AHA_1665	1818820	1819047	-	conserved hypothetical protein	identified by match to protein family HMM PF07208	gene	gene1663	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1665
AHA_1666	AHA_1666		AHA_1666	1819040	1820170	+	nucleoid-associated protein NdpA	identified by match to protein family HMM PF04245	gene	gene1664	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1666
AHA_1667	AHA_1667		AHA_1667	1820566	1821747	+	maltose-binding periplasmic protein	identified by match to protein family HMM PF01547	gene	gene1665	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1667
AHA_1668	AHA_1668		AHA_1668	1821823	1823475	+	maltose transport system permease protein MalF	identified by match to protein family HMM PF00528	gene	gene1666	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1668
AHA_1669	AHA_1669		AHA_1669	1823488	1824378	+	maltose transport system permease protein MalG	identified by match to protein family HMM PF00528	gene	gene1667	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1669
AHA_1670	AHA_1670		AHA_1670	1824448	1825584	+	maltose/maltodextrin import ATP-binding protein MalK	identified by match to protein family HMM PF00005%3B match to protein family HMM PF03459	gene	gene1668	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1670
AHA_1671	AHA_1671		AHA_1671	1825700	1826515	-	polyphosphate kinase 2	identified by match to protein family HMM PF03976	gene	gene1669	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1671
AHA_1672	AHA_1672		AHA_1672	1826628	1827428	+	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene1670	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1672
AHA_1673	AHA_1673	mipA	mipA	1827514	1828320	-	MltA-interacting protein MipA	identified by similarity to SP:P0A908%3B match to protein family HMM PF06629	gene	gene1671	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1673
AHA_1674	AHA_1674		AHA_1674	1828356	1829426	-	putative permease%2C PerM family	identified by match to protein family HMM PF01594	gene	gene1672	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1674
AHA_1675	AHA_1675		AHA_1675	1829442	1829684	-	conserved hypothetical protein	identified by match to protein family HMM PF01206	gene	gene1673	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1675
AHA_1676	AHA_1676		AHA_1676	1829864	1831267	+	zinc metalloprotease	identified by match to protein family HMM PF01435	gene	gene1674	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1676
AHA_1677	AHA_1677		AHA_1677	1831387	1831869	-	thioredoxin		gene	gene1675	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1677
AHA_1678	AHA_1678	arsC-1	arsC-1	1831930	1832280	+	arsenate reductase	identified by match to protein family HMM PF03960%3B match to protein family HMM TIGR00014	gene	gene1676	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1678
AHA_1679	AHA_1679		AHA_1679	1832277	1832672	+	conserved hypothetical protein		gene	gene1677	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1679
AHA_1680	AHA_1680		AHA_1680	1832963	1834033	+	penicillin acylase	identified by match to protein family HMM PF02275	gene	gene1678	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1680
AHA_1681	AHA_1681		AHA_1681	1834070	1834690	-	protein of unknown function	identified by match to protein family HMM PF04336	gene	gene1679	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1681
AHA_1682	AHA_1682	iadA	iadA	1834867	1835997	+	isoaspartyl dipeptidase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR01975	gene	gene1680	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1682
AHA_1683	AHA_1683		AHA_1683	1836108	1837010	-	putative membrane protein	identified by match to protein family HMM PF03956	gene	gene1681	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1683
AHA_1684	AHA_1684		AHA_1684	1837544	1838314	+	histidine ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1682	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1684
AHA_1685	AHA_1685		AHA_1685	1838380	1839153	+	arginine and ornithine binding protein	identified by match to protein family HMM PF00497	gene	gene1683	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1685
AHA_1686	AHA_1686		AHA_1686	1839358	1840098	+	histidine ABC transporter%2C permease protein HisQ	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene1684	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1686
AHA_1687	AHA_1687		AHA_1687	1840102	1840794	+	histidine ABC transporter%2C permease protein HisM	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene1685	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1687
AHA_1688	AHA_1688		AHA_1688	1840846	1841487	-	conserved hypothetical protein		gene	gene1686	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1688
AHA_1689	AHA_1689	pflA	pflA	1841574	1842392	-	pyruvate formate-lyase activating enzyme	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02493	gene	gene1687	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1689
AHA_1690	AHA_1690		AHA_1690	1842458	1845436	-	PAS:GGDEF domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene1688	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1690
AHA_1691	AHA_1691		AHA_1691	1845532	1847220	+	NADH dehydrogenase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00581%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene1689	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1691
AHA_1692	AHA_1692		AHA_1692	1847308	1852275	+	alpha-2-macroglobulin%2C N-terminal:Alpha-2-macroglobulin%2C N-terminal	identified by match to protein family HMM PF01835%3B match to protein family HMM PF07703	gene	gene1690	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1692
AHA_1693	AHA_1693	pbpC	pbpC	1852286	1854685	+	penicillin-binding protein 1C	identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02073	gene	gene1691	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1693
AHA_1694	AHA_1694		AHA_1694	1854787	1855590	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1692	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1694
AHA_1695	AHA_1695	thiI	thiI	1855925	1857373	+	thiamine biosynthesis/tRNA modification protein ThiI	identified by match to protein family HMM PF02568%3B match to protein family HMM PF02926%3B match to protein family HMM TIGR00342	gene	gene1693	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1695
AHA_1696	AHA_1696		AHA_1696	1857452	1857988	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1694	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1696
AHA_1697	AHA_1697		AHA_1697	1857946	1858578	-	putative membrane protein	identified by match to protein family HMM PF03458	gene	gene1695	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1697
AHA_1698	AHA_1698		AHA_1698	1858995	1859903	+	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene1696	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1698
AHA_1699	AHA_1699		AHA_1699	1860482	1861387	+	flagellin	identified by match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene1697	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1699
AHA_1700	AHA_1700		AHA_1700	1861426	1861866	+	flagellin protein	identified by match to protein family HMM PF03646	gene	gene1698	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1700
AHA_1701	AHA_1701	fliD	fliD	1861893	1863302	+	flagellar hook-associated protein 2	identified by match to protein family HMM PF02465%3B match to protein family HMM PF07195%3B match to protein family HMM PF07196	gene	gene1699	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1701
AHA_1702	AHA_1702	fliS	fliS	1863328	1863750	+	flagellar protein FliS	identified by similarity to GB:AAT42123.1%3B match to protein family HMM PF02561%3B match to protein family HMM TIGR00208	gene	gene1700	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1702
AHA_1703	AHA_1703		AHA_1703	1864132	1866141	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1701	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1703
AHA_1704	AHA_1704		AHA_1704	1866230	1867051	-	periplasmic binding protein	identified by match to protein family HMM PF01497	gene	gene1702	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1704
AHA_1705	AHA_1705		AHA_1705	1867044	1867913	-	cobalamin biosynthesis protein CobD		gene	gene1703	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1705
AHA_1706	AHA_1706	mtnN-2	mtnN-2	1867991	1868683	-	MTA/SAH nucleosidase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR01704	gene	gene1704	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1706
AHA_1707	AHA_1707		AHA_1707	1868791	1869549	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1705	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1707
AHA_1708	AHA_1708		AHA_1708	1869639	1870571	-	GufA protein	identified by match to protein family HMM PF02535	gene	gene1706	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1708
AHA_1709	AHA_1709		AHA_1709	1870808	1872580	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1707	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1709
AHA_1710	AHA_1710		AHA_1710	1873040	1873894	-	inositol-1-monophosphatase	identified by match to protein family HMM PF00459	gene	gene1708	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1710
AHA_1711	AHA_1711		AHA_1711	1874045	1874500	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1709	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1711
AHA_1712	AHA_1712		AHA_1712	1874693	1875355	+	glutathione S-transferase	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene1710	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1712
AHA_1713	AHA_1713		AHA_1713	1875606	1876805	+	multidrug resistance protein D	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710	gene	gene1711	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1713
AHA_1714	AHA_1714		AHA_1714	1877170	1877544	-	conserved hypothetical protein	identified by match to protein family HMM PF05164	gene	gene1712	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1714
AHA_1715	AHA_1715		AHA_1715	1877676	1878245	+	YecA family protein	identified by match to protein family HMM PF03695%3B match to protein family HMM TIGR02292	gene	gene1713	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1715
AHA_1716	AHA_1716	ubiH	ubiH	1878429	1879646	+	2-polyprenyl-6-methoxyphenol 4-hydroxylase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01984%3B match to protein family HMM TIGR01988	gene	gene1714	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1716
AHA_1717	AHA_1717		AHA_1717	1879742	1880971	+	protein VisC	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988	gene	gene1715	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1717
AHA_1718	AHA_1718	gcvT	gcvT	1881450	1882547	+	glycine cleavage system T protein	identified by match to protein family HMM PF01571%3B match to protein family HMM TIGR00528	gene	gene1716	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1718
AHA_1719	AHA_1719	gcvH	gcvH	1882653	1883042	+	glycine cleavage system H protein	identified by match to protein family HMM PF01597%3B match to protein family HMM TIGR00527	gene	gene1717	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1719
AHA_1720	AHA_1720	gcvP	gcvP	1883295	1886171	+	glycine dehydrogenase	identified by match to protein family HMM PF02347%3B match to protein family HMM TIGR00461	gene	gene1718	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1720
AHA_1721	AHA_1721		AHA_1721	1886286	1887359	-	conserved protein	identified by match to protein family HMM PF03773	gene	gene1719	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1721
AHA_1722	AHA_1722		AHA_1722	1887466	1887762	+	transcriptional regulator%2C ArsR family	identified by match to protein family HMM PF01022	gene	gene1720	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1722
AHA_1723	AHA_1723		AHA_1723	1887834	1888217	+	arsenic operon regulator	identified by match to protein family HMM PF01022	gene	gene1721	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1723
AHA_1724	AHA_1724		AHA_1724	1888221	1888649	+	arsenical resistance operon trans-acting repressor ArsD	identified by match to protein family HMM PF06953	gene	gene1722	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1724
AHA_1725	AHA_1725		AHA_1725	1888718	1890517	+	arsenical pump-driving ATPase	identified by match to protein family HMM PF02374%3B match to protein family HMM TIGR00345	gene	gene1723	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1725
AHA_1726	AHA_1726	arsB	arsB	1890616	1891650	+	arsenical-resistance protein	identified by match to protein family HMM PF01758%3B match to protein family HMM TIGR00832	gene	gene1724	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1726
AHA_1727	AHA_1727	arsC-2	arsC-2	1891647	1892078	+	arsenate reductase	identified by similarity to SP:P37311%3B match to protein family HMM PF03960%3B match to protein family HMM TIGR00014	gene	gene1725	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1727
AHA_1728	AHA_1728		AHA_1728	1892219	1892968	+	methyltransferase		gene	gene1726	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1728
AHA_1729	AHA_1729		AHA_1729	1893079	1893387	-	conserved hypothetical protein		gene	gene1727	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1729
AHA_1730	AHA_1730		AHA_1730	1893491	1894783	+	major facilitator family transporter	identified by match to protein family HMM PF07690	gene	gene1728	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1730
AHA_1731	AHA_1731		AHA_1731	1894849	1896429	-	alkyl hydroperoxide reductase subunit F	identified by match to protein family HMM PF00070%3B match to protein family HMM PF03486%3B match to protein family HMM PF07992	gene	gene1729	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1731
AHA_1732	AHA_1732		AHA_1732	1896523	1897089	-	alkyl hydroperoxide reductase subunit C	identified by match to protein family HMM PF00578	gene	gene1730	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1732
AHA_1733	AHA_1733		AHA_1733	1897750	1898196	-	CBS domains protein	identified by similarity to SP:P39066%3B match to protein family HMM PF00571	gene	gene1731	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1733
AHA_1734	AHA_1734	queA	queA	1898409	1899476	+	S-adenosylmethionine:tRNA ribosyltransferase-isomerase	identified by match to protein family HMM PF02547%3B match to protein family HMM TIGR00113	gene	gene1732	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1734
AHA_1735	AHA_1735	tgt	tgt	1899547	1900683	+	queuine tRNA-ribosyltransferase	identified by match to protein family HMM PF01702%3B match to protein family HMM TIGR00430%3B match to protein family HMM TIGR00449	gene	gene1733	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1735
AHA_1736	AHA_1736	yajC	yajC	1900734	1901069	+	preprotein translocase%2C YajC subunit	identified by match to protein family HMM PF02699%3B match to protein family HMM TIGR00739	gene	gene1734	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1736
AHA_1737	AHA_1737	secD-1	secD-1	1901088	1902941	+	protein-export membrane protein SecD	identified by similarity to SP:P19673%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129	gene	gene1735	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1737
AHA_1738	AHA_1738	secF-1	secF-1	1902951	1903898	+	protein-export membrane protein SecF	identified by similarity to SP:P19674%3B match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966	gene	gene1736	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1738
AHA_1739	AHA_1739		AHA_1739	1903998	1904366	+	rhodanese domain protein	identified by match to protein family HMM PF00581	gene	gene1737	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1739
AHA_1740	AHA_1740		AHA_1740	1904511	1905404	+	lipoprotein NlpI	identified by similarity to SP:P39833%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene1738	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1740
AHA_1741	AHA_1741		AHA_1741	1905522	1906394	-	collagenase	identified by match to protein family HMM PF01136	gene	gene1739	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1741
AHA_1742	AHA_1742		AHA_1742	1906407	1907402	-	STM-proteaseA	identified by match to protein family HMM PF01136	gene	gene1740	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1742
AHA_1743	AHA_1743		AHA_1743	1908079	1908495	-	conserved hypothetical protein		gene	gene1742	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1743
AHA_1744	AHA_1744		AHA_1744	1907593	1908132	+	sterol binding protein	identified by match to protein family HMM PF02036	gene	gene1741	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1744
AHA_1745	AHA_1745		AHA_1745	1908675	1909400	+	RNA methyltransferase%2C TrmH family%2C group 1	identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050	gene	gene1743	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1745
AHA_1746	AHA_1746	iscR	iscR	1909494	1909997	+	iron-sulfur cluster assembly transcription factor IscR	identified by match to protein family HMM PF02082%3B match to protein family HMM TIGR00738%3B match to protein family HMM TIGR02010	gene	gene1744	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1746
AHA_1747	AHA_1747	iscS	iscS	1910055	1911269	+	cysteine desulfurase IscS	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR02006	gene	gene1745	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1747
AHA_1748	AHA_1748	iscU	iscU	1911311	1911694	+	FeS cluster assembly scaffold IscU	identified by match to protein family HMM PF01592%3B match to protein family HMM TIGR01999	gene	gene1746	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1748
AHA_1749	AHA_1749	iscA	iscA	1911710	1912033	+	iron-sulfur cluster assembly protein IscA	identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049%3B match to protein family HMM TIGR02011	gene	gene1747	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1749
AHA_1750	AHA_1750	hscB	hscB	1912156	1912674	+	Fe-S protein assembly co-chaperone HscB	identified by similarity to SP:P0A6L9%3B match to protein family HMM PF00226%3B match to protein family HMM PF07743%3B match to protein family HMM TIGR00714	gene	gene1748	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1750
AHA_1751	AHA_1751	hscA	hscA	1912703	1914550	+	Fe-S protein assembly chaperone HscA	identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR01991	gene	gene1749	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1751
AHA_1752	AHA_1752	fdx	fdx	1914552	1914890	+	ferredoxin%2C 2Fe-2S type%2C ISC system	identified by match to protein family HMM PF00111%3B match to protein family HMM TIGR02007	gene	gene1750	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1752
AHA_1753	AHA_1753	pepB	pepB	1915048	1916349	+	aminopeptidase B	identified by match to protein family HMM PF00883	gene	gene1751	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1753
AHA_1754	AHA_1754		AHA_1754	1916453	1917736	+	peptidase B	identified by match to protein family HMM PF00883	gene	gene1752	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1754
AHA_1755	AHA_1755		AHA_1755	1918006	1918434	+	nucleoside diphosphate kinase	identified by match to protein family HMM PF00334	gene	gene1753	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1755
AHA_1756	AHA_1756		AHA_1756	1918603	1919706	+	radical SAM enzyme%2C Cfr family	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00048	gene	gene1754	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1756
AHA_1757	AHA_1757	pilF	pilF	1919719	1920510	+	type IV pilus biogenesis/stability protein PilW	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM TIGR02521	gene	gene1755	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1757
AHA_1758	AHA_1758		AHA_1758	1920500	1921438	+	conserved hypothetical protein	identified by similarity to GB:AAZ26824.1	gene	gene1756	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1758
AHA_1759	AHA_1759	ispG	ispG	1921449	1922564	+	4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase	identified by match to protein family HMM PF04551%3B match to protein family HMM TIGR00612	gene	gene1757	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1759
AHA_1760	AHA_1760	hisS	hisS	1922703	1923980	+	histidyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM TIGR00442	gene	gene1758	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1760
AHA_1761	AHA_1761		AHA_1761	1923984	1924634	+	tetratricopeptide repeat family	identified by match to protein family HMM PF07721	gene	gene1759	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1761
AHA_1762	AHA_1762		AHA_1762	1924654	1925811	+	PQQ enzyme repeat domain protein	identified by match to protein family HMM PF01011	gene	gene1760	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1762
AHA_1763	AHA_1763		AHA_1763	1925886	1927385	+	GTP-binding protein EngA	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00650	gene	gene1761	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1763
AHA_1764	AHA_1764		AHA_1764	1927490	1927723	+	ubiquitin ligase sinat5	identified by match to protein family HMM PF07191	gene	gene1762	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1764
AHA_1765	AHA_1765		AHA_1765	1928082	1929572	-	bacterial extracellular solute-binding proteins%2C family 3	identified by match to protein family HMM PF00497%3B match to protein family HMM PF01464	gene	gene1763	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1765
AHA_1766	AHA_1766	purL	purL	1929554	1933627	+	phosphoribosylformylglycinamidine synthase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR01735	gene	gene1764	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1766
AHA_1767	AHA_1767		AHA_1767	1933689	1935215	-	sensory box protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00229	gene	gene1765	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1767
AHA_1768	AHA_1768		AHA_1768	1935231	1936664	-	response regulator/sensory box/hdig domain protein	identified by match to protein family HMM PF00989%3B match to protein family HMM PF01966%3B match to protein family HMM TIGR00229	gene	gene1766	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1768
AHA_1769	AHA_1769		AHA_1769	1936661	1937791	-	conserved hypothetical protein		gene	gene1767	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1769
AHA_1770	AHA_1770		AHA_1770	1937981	1939444	-	NADH-quinone oxidoreductase chain n	identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01770	gene	gene1768	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1770
AHA_1771	AHA_1771		AHA_1771	1939506	1941026	-	NADH-quinone oxidoreductase chain m	identified by match to protein family HMM PF00361%3B match to protein family HMM TIGR01972	gene	gene1769	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1771
AHA_1772	AHA_1772		AHA_1772	1941105	1942952	-	NADH-quinone oxidoreductase chain l	identified by match to protein family HMM PF00361%3B match to protein family HMM PF00662%3B match to protein family HMM TIGR01974	gene	gene1770	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1772
AHA_1773	AHA_1773		AHA_1773	1942949	1943257	-	NADH-quinone oxidoreductase chain k	identified by match to protein family HMM PF00420	gene	gene1771	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1773
AHA_1774	AHA_1774		AHA_1774	1943257	1943805	-	NADH-quinone oxidoreductase chain j	identified by match to protein family HMM PF00499	gene	gene1772	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1774
AHA_1775	AHA_1775		AHA_1775	1943816	1944358	-	NADH-quinone oxidoreductase chain i	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01971	gene	gene1773	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1775
AHA_1776	AHA_1776		AHA_1776	1944487	1945455	-	NADH-quinone oxidoreductase chain h	identified by match to protein family HMM PF00146	gene	gene1774	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1776
AHA_1777	AHA_1777		AHA_1777	1945452	1948181	-	NADH-quinone oxidoreductase%2C chain g	identified by match to protein family HMM PF00111%3B match to protein family HMM PF00384%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01973	gene	gene1775	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1777
AHA_1778	AHA_1778	nuoF	nuoF	1948261	1949628	-	NADH-quinone oxidoreductase%2C f subunit	identified by match to protein family HMM PF01512%3B match to protein family HMM TIGR01959	gene	gene1776	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1778
AHA_1779	AHA_1779		AHA_1779	1949625	1950167	-	NADH-quinone oxidoreductase chain e	identified by match to protein family HMM PF01257%3B match to protein family HMM TIGR01958	gene	gene1777	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1779
AHA_1780	AHA_1780		AHA_1780	1950229	1952034	-	NADH-quinone oxidoreductase chain c/d	identified by match to protein family HMM PF00329%3B match to protein family HMM PF00346%3B match to protein family HMM TIGR01961%3B match to protein family HMM TIGR01962	gene	gene1778	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1780
AHA_1781	AHA_1781		AHA_1781	1952037	1952711	-	NADH-quinone oxidoreductase chain b	identified by match to protein family HMM PF01058%3B match to protein family HMM TIGR01957	gene	gene1779	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1781
AHA_1782	AHA_1782		AHA_1782	1952741	1953145	-	NADH-quinone oxidoreductase chain a	identified by match to protein family HMM PF00507	gene	gene1780	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1782
AHA_1783	AHA_1783		AHA_1783	1953404	1954279	-	chemotaxis protein MotB	identified by match to protein family HMM PF00691	gene	gene1781	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1783
AHA_1784	AHA_1784		AHA_1784	1954257	1955015	-	chemotaxis MotA protein	identified by match to protein family HMM PF01618	gene	gene1782	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1784
AHA_1785	AHA_1785		AHA_1785	1955468	1955555	-	tRNA-Ser		tRNA	gene1783	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1785
AHA_1786	AHA_1786		AHA_1786	1955701	1956318	-	conserved hypothetical protein	identified by match to protein family HMM PF04536	gene	gene1784	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1786
AHA_1787	AHA_1787		AHA_1787	1956339	1957067	-	conserved hypothetical protein	identified by match to protein family HMM PF04536	gene	gene1785	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1787
AHA_1788	AHA_1788		AHA_1788	1957064	1957654	-	LemA protein	identified by match to protein family HMM PF04011	gene	gene1786	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1788
AHA_1789	AHA_1789	mepA	mepA	1957712	1958494	-	penicillin-insensitive murein endopeptidase	identified by match to protein family HMM PF03411	gene	gene1787	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1789
AHA_1790	AHA_1790		AHA_1790	1958652	1959194	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1788	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1790
AHA_1791	AHA_1791		AHA_1791	1959405	1959692	+	RNA-binding protein	identified by match to protein family HMM PF00076	gene	gene1789	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1791
AHA_1792	AHA_1792		AHA_1792	1959764	1960663	-	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00248	gene	gene1790	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1792
AHA_1793	AHA_1793		AHA_1793	1960779	1961186	+	bacteriophage CI repressor protein%2C putative	identified by match to protein family HMM PF07022	gene	gene1791	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1793
AHA_1794	AHA_1794		AHA_1794	1961268	1961969	+	CsgA		gene	gene1792	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1794
AHA_1795	AHA_1795		AHA_1795	1962060	1963079	+	L-allo-threonine aldolase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF01212	gene	gene1793	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1795
AHA_1796	AHA_1796		AHA_1796	1963140	1963577	-	GGDEF domain protein		gene	gene1794	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1796
AHA_1797	AHA_1797		AHA_1797	1963580	1964614	-	response regulator	identified by match to protein family HMM PF00072	gene	gene1795	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1797
AHA_1798	AHA_1798		AHA_1798	1964669	1965607	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1796	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1798
AHA_1799	AHA_1799		AHA_1799	1965681	1966382	-	conserved hypothetical protein		gene	gene1797	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1799
AHA_1800	AHA_1800		AHA_1800	1966555	1968486	+	PAS:GGDEF domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1798	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1800
AHA_1801	AHA_1801		AHA_1801	1968575	1969300	+	oxygen-insensitive NADPH nitroreductase	identified by match to protein family HMM PF00881	gene	gene1799	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1801
AHA_1802	AHA_1802		AHA_1802	1969489	1970253	+	ATPase involved in DNA repair		gene	gene1800	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1802
AHA_1803	AHA_1803		AHA_1803	1970256	1970801	+	conserved hypothetical protein		gene	gene1801	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1803
AHA_1804	AHA_1804		AHA_1804	1970848	1972056	-	major facilitator family transporter	identified by match to protein family HMM PF07690	gene	gene1802	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1804
AHA_1805	AHA_1805		AHA_1805	1972150	1973025	+	transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1803	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1805
AHA_1806	AHA_1806	cysB	cysB	1973099	1974073	+	HTH-type transcriptional regulator CysB	identified by similarity to SP:P45600%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1804	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1806
AHA_1807	AHA_1807	ribA	ribA	1974152	1974745	-	GTP cyclohydrolase II	identified by similarity to SP:P0A7I7%3B match to protein family HMM PF00925%3B match to protein family HMM TIGR00505	gene	gene1805	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1807
AHA_1808	AHA_1808	cmk	cmk	1974995	1975687	+	cytidylate kinase	identified by match to protein family HMM PF02224%3B match to protein family HMM TIGR00017	gene	gene1806	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1808
AHA_1809	AHA_1809	rpsA	rpsA	1975781	1977451	+	ribosomal protein S1	identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00717	gene	gene1807	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1809
AHA_1810	AHA_1810	ihfB	ihfB	1977547	1977831	+	integration host factor%2C beta subunit	identified by match to protein family HMM PF00216%3B match to protein family HMM TIGR00988	gene	gene1808	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1810
AHA_1811	AHA_1811		AHA_1811	1977988	1978272	+	conserved hypothetical protein	identified by match to protein family HMM PF06305	gene	gene1809	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1811
AHA_1812	AHA_1812		AHA_1812	1978282	1979448	+	tetratricopeptide repeat family protein		gene	gene1810	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1812
AHA_1813	AHA_1813	pyrF	pyrF	1979550	1980251	+	orotidine 5'-phosphate decarboxylase	identified by match to protein family HMM PF00215%3B match to protein family HMM TIGR01740	gene	gene1811	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1813
AHA_1814	AHA_1814		AHA_1814	1980299	1980856	-	integral membrane protein		gene	gene1812	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1814
AHA_1815	AHA_1815		AHA_1815	1980807	1981493	+	DTW domain protein%2C putative	identified by match to protein family HMM PF03942	gene	gene1813	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1815
AHA_1816	AHA_1816	exsB	exsB	1981516	1982223	+	exsB protein	identified by match to protein family HMM PF06508%3B match to protein family HMM TIGR00364	gene	gene1814	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1816
AHA_1817	AHA_1817		AHA_1817	1982243	1982956	+	radical activating enzyme	identified by match to protein family HMM PF04055	gene	gene1815	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1817
AHA_1818	AHA_1818		AHA_1818	1982958	1983188	+	conserved hypothetical protein		gene	gene1816	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1818
AHA_1819	AHA_1819		AHA_1819	1983185	1983748	+	ATP:cob(I)alamin adenosyltransferase%2C putative	identified by match to protein family HMM PF01923%3B match to protein family HMM TIGR00636	gene	gene1817	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1819
AHA_1820	AHA_1820		AHA_1820	1983815	1984219	-	DNA-binding protein StpA	identified by match to protein family HMM PF00816	gene	gene1818	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1820
AHA_1821	AHA_1821		AHA_1821	1984799	1986379	+	Na+/H+ antiporter family	identified by match to protein family HMM PF03553	gene	gene1819	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1821
AHA_1822	AHA_1822	tdk	tdk	1986466	1987047	+	thymidine kinase	identified by match to protein family HMM PF00265	gene	gene1820	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1822
AHA_1823	AHA_1823		AHA_1823	1987116	1988453	-	conserved hypothetical protein	identified by match to protein family HMM PF08014%3B match to protein family HMM TIGR02421	gene	gene1821	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1823
AHA_1824	AHA_1824		AHA_1824	1988606	1989067	+	conserved hypothetical protein		gene	gene1822	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1824
AHA_1825	AHA_1825		AHA_1825	1989214	1989301	+	tRNA-Ser		tRNA	gene1823	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1825
AHA_1826	AHA_1826		AHA_1826	1990515	1991033	+	hemolysin co-regulated protein	identified by similarity to GB:CAA59143.1%3B match to protein family HMM PF05638	gene	gene1824	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1826
AHA_1827	AHA_1827		AHA_1827	1991311	1993542	+	VgrG protein	identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646	gene	gene1825	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1827
AHA_1828	AHA_1828		AHA_1828	1993544	1994863	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1826	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1828
AHA_1829	AHA_1829		AHA_1829	1994873	1995862	+	conserved hypothetical protein	identified by similarity to GB:AAN69637.1	gene	gene1827	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1829
AHA_1830	AHA_1830		AHA_1830	1995977	1996522	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1828	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1830
AHA_1831	AHA_1831		AHA_1831	1996643	1998031	+	conserved hypothetical protein	identified by similarity to GB:CAH12461.1	gene	gene1829	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1831
AHA_1832	AHA_1832		AHA_1832	1998704	1999207	+	conserved hypothetical protein	identified by similarity to GB:CAG76344.1%3B match to protein family HMM PF05591	gene	gene1830	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1832
AHA_1833	AHA_1833		AHA_1833	1999252	2000724	+	conserved hypothetical protein	identified by similarity to GB:CAG76343.1%3B match to protein family HMM PF05943	gene	gene1831	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1833
AHA_1834	AHA_1834		AHA_1834	2000731	2001162	+	conserved hypothetical protein	identified by similarity to GB:CAG76342.1%3B match to protein family HMM PF07025	gene	gene1832	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1834
AHA_1835	AHA_1835		AHA_1835	2001166	2002932	+	conserved hypothetical protein	identified by similarity to GB:CAH22873.1%3B match to protein family HMM PF05947	gene	gene1833	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1835
AHA_1836	AHA_1836		AHA_1836	2002896	2003894	+	conserved hypothetical protein	identified by similarity to GB:CAG76340.1%3B match to protein family HMM PF06996	gene	gene1834	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1836
AHA_1837	AHA_1837		AHA_1837	2003951	2005201	+	conserved hypothetical protein	identified by similarity to GB:CAG76339.1	gene	gene1835	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1837
AHA_1838	AHA_1838		AHA_1838	2005201	2005716	+	putative lipoprotein		gene	gene1836	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1838
AHA_1839	AHA_1839		AHA_1839	2005719	2007053	+	conserved hypothetical protein	identified by match to protein family HMM PF05936	gene	gene1837	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1839
AHA_1840	AHA_1840		AHA_1840	2007145	2007855	+	conserved hypothetical protein	identified by similarity to GB:AAF96029.1	gene	gene1838	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1840
AHA_1841	AHA_1841		AHA_1841	2007876	2010518	+	ClpA/ClpB family protein	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene1839	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1841
AHA_1842	AHA_1842		AHA_1842	2010521	2012059	+	sigma-54 dependent transcriptional regulator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene1840	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1842
AHA_1843	AHA_1843		AHA_1843	2012059	2012664	+	conserved hypothetical protein	identified by similarity to GB:AAS64093.1	gene	gene1841	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1843
AHA_1844	AHA_1844		AHA_1844	2012673	2014109	+	ImpA-related domain protein	identified by match to protein family HMM PF06812	gene	gene1842	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1844
AHA_1845	AHA_1845		AHA_1845	2014151	2017636	+	ImcF family protein	identified by match to protein family HMM PF06744%3B match to protein family HMM PF06761	gene	gene1843	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1845
AHA_1846	AHA_1846		AHA_1846	2017683	2019113	+	ImpA domain protein	identified by match to protein family HMM PF06812	gene	gene1844	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1846
AHA_1847	AHA_1847		AHA_1847	2019371	2019658	+	paar motif protein	identified by match to protein family HMM PF05488	gene	gene1845	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1847
AHA_1848	AHA_1848		AHA_1848	2019669	2021714	+	Rhs element Vgr family protein	identified by match to protein family HMM PF04524%3B match to protein family HMM TIGR01646	gene	gene1846	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1848
AHA_1849	AHA_1849		AHA_1849	2021749	2024304	+	conserved domain protein		gene	gene1847	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1849
AHA_1850	AHA_1850		AHA_1850	2024307	2024711	+	conserved hypothetical protein	identified by similarity to GB:AAO58637.1%3B match to protein family HMM PF07007	gene	gene1848	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1850
AHA_1851	AHA_1851		AHA_1851	2026838	2026913	-	tRNA-His		tRNA	gene1849	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1851
AHA_1852	AHA_1852		AHA_1852	2026963	2027039	-	tRNA-Arg		tRNA	gene1850	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1852
AHA_1853	AHA_1853		AHA_1853	2027076	2027152	-	tRNA-Pro		tRNA	gene1851	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1853
AHA_1854	AHA_1854		AHA_1854	2027356	2028219	+	FolD bifunctional protein	identified by match to protein family HMM PF00763%3B match to protein family HMM PF02882	gene	gene1852	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1854
AHA_1855	AHA_1855	cspD	cspD	2028327	2028545	-	cold shock domain protein CspD	identified by match to protein family HMM PF00313%3B match to protein family HMM TIGR02381	gene	gene1853	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1855
AHA_1856	AHA_1856	clpS	clpS	2028774	2029091	+	ATP-dependent Clp protease adaptor protein ClpS	identified by match to protein family HMM PF02617	gene	gene1854	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1856
AHA_1857	AHA_1857	clpA	clpA	2029151	2031403	+	ATP-dependent Clp protease%2C ATP-binding subunit ClpA	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02639	gene	gene1855	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1857
AHA_1858	AHA_1858	infA	infA	2031473	2031712	-	translation initiation factor IF-1	identified by match to protein family HMM PF00575%3B match to protein family HMM PF01176%3B match to protein family HMM TIGR00008	gene	gene1856	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1858
AHA_1859	AHA_1859		AHA_1859	2031761	2032477	-	putative arginyl-tRNA--protein transferase	identified by match to protein family HMM PF04376%3B match to protein family HMM PF04377	gene	gene1857	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1859
AHA_1860	AHA_1860	aat	aat	2032474	2033181	-	leucyl/phenylalanyl-tRNA--protein transferase	identified by match to protein family HMM PF03588%3B match to protein family HMM TIGR00667	gene	gene1858	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1860
AHA_1861	AHA_1861		AHA_1861	2033201	2033671	+	putative surface antigen	identified by match to protein family HMM PF05433	gene	gene1859	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1861
AHA_1862	AHA_1862		AHA_1862	2033782	2035029	-	response regulator protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1860	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1862
AHA_1863	AHA_1863	trxB	trxB	2035087	2036268	-	thioredoxin-disulfide reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01292	gene	gene1861	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1863
AHA_1864	AHA_1864	lrp	lrp	2036934	2037425	+	leucine responsive regulatory protein	identified by similarity to SP:P19494%3B match to protein family HMM PF01037	gene	gene1862	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1864
AHA_1865	AHA_1865		AHA_1865	2037627	2040149	+	FtsK/SpoIIIE family protein	identified by similarity to SP:P46889%3B match to protein family HMM PF01580	gene	gene1863	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1865
AHA_1866	AHA_1866	lolA	lolA	2040227	2040835	+	outer membrane lipoprotein carrier protein LolA	identified by match to protein family HMM PF03548%3B match to protein family HMM TIGR00547	gene	gene1864	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1866
AHA_1867	AHA_1867		AHA_1867	2040959	2042314	+	ATPase%2C AAA family	identified by match to protein family HMM PF00004	gene	gene1865	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1867
AHA_1868	AHA_1868	serS	serS	2042654	2043949	+	seryl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02403%3B match to protein family HMM TIGR00414	gene	gene1866	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1868
AHA_1869	AHA_1869	cvpA	cvpA	2044136	2044624	+	CvpA family protein	identified by match to protein family HMM PF02674	gene	gene1867	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1869
AHA_1870	AHA_1870	purF	purF	2044646	2046166	+	amidophosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM PF00310%3B match to protein family HMM TIGR01134	gene	gene1868	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1870
AHA_1871	AHA_1871		AHA_1871	2046352	2047110	+	tRNA-(ms[2]io[6]A)-hydroxylase	identified by match to protein family HMM PF06175	gene	gene1869	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1871
AHA_1872	AHA_1872	sapF	sapF	2047265	2048050	-	peptide ABC transporter%2C ATP-binding protein SapF	identified by similarity to SP:P36638%3B match to protein family HMM PF00005	gene	gene1870	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1872
AHA_1873	AHA_1873	sapD	sapD	2048106	2049104	-	peptide ABC transporter%2C ATP-binding protein SapD	identified by similarity to SP:P36636%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene1871	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1873
AHA_1874	AHA_1874	sapC	sapC	2049104	2049997	-	peptide ABC transporter%2C permease protein SapC	identified by similarity to SP:P0A2J5%3B match to protein family HMM PF00528	gene	gene1872	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1874
AHA_1875	AHA_1875	sapB	sapB	2050033	2050992	-	peptide ABC transporter%2C permease protein SapB	identified by similarity to SP:P0A2J3%3B match to protein family HMM PF00528	gene	gene1873	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1875
AHA_1876	AHA_1876	sapA	sapA	2050995	2052560	-	peptide ABC transporter%2C periplasmic peptide-binding protein SapA	identified by similarity to SP:P36634%3B match to protein family HMM PF00496	gene	gene1874	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1876
AHA_1877	AHA_1877		AHA_1877	2052681	2053715	-	Psp operon transcriptional activator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR02974	gene	gene1875	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1877
AHA_1878	AHA_1878		AHA_1878	2053911	2054591	+	phage shock protein A	identified by match to protein family HMM PF04012%3B match to protein family HMM TIGR02977	gene	gene1876	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1878
AHA_1879	AHA_1879	pspB	pspB	2054595	2054831	+	phage shock protein B	identified by match to protein family HMM PF06667%3B match to protein family HMM TIGR02976	gene	gene1877	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1879
AHA_1880	AHA_1880		AHA_1880	2054860	2055342	+	phage shock protein C	identified by match to protein family HMM PF04024%3B match to protein family HMM TIGR02978	gene	gene1878	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1880
AHA_1881	AHA_1881		AHA_1881	2055450	2056880	+	amino acid regulated cytosolic protein	identified by match to protein family HMM PF04317	gene	gene1879	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1881
AHA_1882	AHA_1882		AHA_1882	2056947	2057972	+	conserved hypothetical protein	identified by match to protein family HMM PF05128%3B match to protein family HMM TIGR01620	gene	gene1880	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1882
AHA_1883	AHA_1883	phhA	phhA	2058144	2058938	+	phenylalanine-4-hydroxylase	identified by match to protein family HMM PF00351%3B match to protein family HMM TIGR01267	gene	gene1881	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1883
AHA_1884	AHA_1884		AHA_1884	2058993	2059331	+	pterin-4-alpha-carbinolamine dehydratase	identified by match to protein family HMM PF01329	gene	gene1882	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1884
AHA_1885	AHA_1885		AHA_1885	2059351	2059452	+	pterin-4-alpha-carbinolamine dehydratase		gene	gene1883	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1885
AHA_1886	AHA_1886	tyrR	tyrR	2059587	2061134	+	transcriptional regulatory protein TyrR	identified by similarity to SP:P07604%3B match to protein family HMM PF00158%3B match to protein family HMM PF01842	gene	gene1884	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1886
AHA_1887	AHA_1887		AHA_1887	2061312	2061881	+	conserved hypothetical protein		gene	gene1885	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1887
AHA_1888	AHA_1888		AHA_1888	2061878	2063146	+	inner membrane protein YfiN	identified by match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene1886	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1888
AHA_1889	AHA_1889		AHA_1889	2063149	2063637	+	OmpA family protein	identified by match to protein family HMM PF00691	gene	gene1887	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1889
AHA_1890	AHA_1890		AHA_1890	2063695	2064474	-	TerC protein	identified by match to protein family HMM PF03741	gene	gene1888	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1890
AHA_1891	AHA_1891		AHA_1891	2064548	2065663	+	ATP-NAD kinase	identified by match to protein family HMM PF01513	gene	gene1889	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1891
AHA_1892	AHA_1892		AHA_1892	2065774	2066052	+	conserved hypothetical protein		gene	gene1890	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1892
AHA_1893	AHA_1893		AHA_1893	2066150	2067814	+	long-chain acyl-CoA synthetase	identified by match to protein family HMM PF00501	gene	gene1891	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1893
AHA_1894	AHA_1894	cdd	cdd	2067899	2068780	-	cytidine deaminase	identified by match to protein family HMM PF00383%3B match to protein family HMM PF08211%3B match to protein family HMM TIGR01355	gene	gene1892	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1894
AHA_1895	AHA_1895		AHA_1895	2068968	2069654	-	LrgB family protein	identified by match to protein family HMM PF04172	gene	gene1893	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1895
AHA_1896	AHA_1896		AHA_1896	2069651	2070007	-	LrgA family protein	identified by match to protein family HMM PF03788	gene	gene1894	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1896
AHA_1897	AHA_1897		AHA_1897	2070167	2071876	+	alpha-galactosidase	identified by match to protein family HMM PF02065	gene	gene1895	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1897
AHA_1898	AHA_1898		AHA_1898	2071949	2072488	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1896	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1898
AHA_1899	AHA_1899		AHA_1899	2072610	2074304	-	exodeoxyribonuclease I	identified by match to protein family HMM PF00929	gene	gene1897	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1899
AHA_1900	AHA_1900	araA	araA	2074271	2075770	-	L-arabinose isomerase	identified by match to protein family HMM PF02610	gene	gene1898	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1900
AHA_1901	AHA_1901		AHA_1901	2075784	2076482	-	L-ribulose-5-phosphate 4-epimerase	identified by match to protein family HMM PF00596	gene	gene1899	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1901
AHA_1902	AHA_1902	araB	araB	2076479	2078170	-	L-ribulokinase	identified by match to protein family HMM PF00370%3B match to protein family HMM PF02782%3B match to protein family HMM TIGR01234	gene	gene1900	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1902
AHA_1903	AHA_1903		AHA_1903	2078532	2079515	+	L-arabinose ABC transporter%2C periplasmic L-arabinose-binding protein	identified by match to protein family HMM PF00532	gene	gene1901	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1903
AHA_1904	AHA_1904		AHA_1904	2079588	2081087	+	L-arabinose ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1902	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1904
AHA_1905	AHA_1905		AHA_1905	2081136	2082137	+	L-arabinose ABC transporter%2C permease protein	identified by match to protein family HMM PF02653	gene	gene1903	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1905
AHA_1906	AHA_1906	araC	araC	2082282	2083193	+	arabinose operon regulatory protein	identified by similarity to SP:P07642%3B match to protein family HMM PF00165%3B match to protein family HMM PF02311	gene	gene1904	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1906
AHA_1907	AHA_1907		AHA_1907	2083288	2084022	-	LysR-family transcriptional regulator	identified by match to protein family HMM PF03466	gene	gene1905	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1907
AHA_1908	AHA_1908		AHA_1908	2084029	2084193	-	LysR-family transcriptional regulator	identified by match to protein family HMM PF00126	gene	gene1906	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1908
AHA_1909	AHA_1909		AHA_1909	2084317	2085183	+	pirin%2C N-terminal:Pirin%2C C-terminal	identified by match to protein family HMM PF02678%3B match to protein family HMM PF05726	gene	gene1907	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1909
AHA_1910	AHA_1910	rpmJ	rpmJ	2085234	2085359	-	ribosomal protein L36	identified by match to protein family HMM PF00444%3B match to protein family HMM TIGR01022	gene	gene1908	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1910
AHA_1911	AHA_1911	rpmE-1	rpmE-1	2085356	2085625	-	ribosomal protein L31	identified by match to protein family HMM PF01197	gene	gene1909	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1911
AHA_1912	AHA_1912		AHA_1912	2085882	2086130	+	DNA-damage-inducible protein I	identified by match to protein family HMM PF06183	gene	gene1910	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1912
AHA_1913	AHA_1913		AHA_1913	2086266	2087087	-	conserved hypothetical protein		gene	gene1911	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1913
AHA_1914	AHA_1914		AHA_1914	2087112	2087615	-	conserved hypothetical protein	identified by match to protein family HMM PF01863	gene	gene1912	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1914
AHA_1915	AHA_1915		AHA_1915	2087756	2089468	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1913	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1915
AHA_1916	AHA_1916		AHA_1916	2089595	2091253	-	probable 5'-nucleotidase	identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872	gene	gene1914	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1916
AHA_1917	AHA_1917	dcuC	dcuC	2091384	2092736	-	anaerobic C4-dicarboxylate transporter DcuC	identified by similarity to SP:Q47134%3B match to protein family HMM PF03606%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00771	gene	gene1915	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1917
AHA_1918	AHA_1918		AHA_1918	2093102	2093671	+	conserved hypothetical protein		gene	gene1916	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1918
AHA_1919	AHA_1919		AHA_1919	2093754	2095751	-	tRNA (5-aminomethyl-2-thiouridylate) methyltransferase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF05430	gene	gene1917	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1919
AHA_1920	AHA_1920	fabB	fabB	2095863	2097074	+	3-oxoacyl-[acyl-carrier-protein] synthase I	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801	gene	gene1918	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1920
AHA_1921	AHA_1921		AHA_1921	2097134	2097628	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene1919	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1921
AHA_1922	AHA_1922	gltA	gltA	2098162	2099448	-	citrate synthase I	identified by match to protein family HMM PF00285%3B match to protein family HMM TIGR01798	gene	gene1920	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1922
AHA_1923	AHA_1923	sdhC	sdhC	2099873	2100262	+	succinate dehydrogenase%2C cytochrome b556 subunit	identified by match to protein family HMM PF01127%3B match to protein family HMM TIGR02970	gene	gene1921	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1923
AHA_1924	AHA_1924		AHA_1924	2100256	2100600	+	succinate dehydrogenase hydrophobic membrane anchor protein	identified by match to protein family HMM TIGR02968	gene	gene1922	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1924
AHA_1925	AHA_1925	sdhA	sdhA	2100602	2102368	+	succinate dehydrogenase%2C flavoprotein subunit	identified by match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM TIGR01812%3B match to protein family HMM TIGR01816	gene	gene1923	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1925
AHA_1926	AHA_1926		AHA_1926	2102385	2103101	+	succinate dehydrogenase iron-sulfur protein	identified by match to protein family HMM TIGR00384	gene	gene1924	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1926
AHA_1927	AHA_1927	sucA	sucA	2103158	2106034	+	2-oxoglutarate dehydrogenase%2C E1 component	identified by match to protein family HMM PF00676%3B match to protein family HMM PF02779%3B match to protein family HMM TIGR00239	gene	gene1925	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1927
AHA_1928	AHA_1928	sucB	sucB	2106127	2107314	+	2-oxoglutarate dehydrogenase%2C E2 component%2C dihydrolipoamide succinyltransferase	identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01347	gene	gene1926	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1928
AHA_1929	AHA_1929		AHA_1929	2107538	2108704	+	succinyl-CoA synthetase beta chain	identified by match to protein family HMM PF00549%3B match to protein family HMM TIGR01016	gene	gene1927	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1929
AHA_1930	AHA_1930		AHA_1930	2108704	2109576	+	succinyl-CoA synthetase alpha chain	identified by match to protein family HMM PF00549%3B match to protein family HMM PF02629%3B match to protein family HMM TIGR01019	gene	gene1928	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1930
AHA_1931	AHA_1931		AHA_1931	2110509	2111084	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene1929	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1931
AHA_1932	AHA_1932		AHA_1932	2111264	2111719	+	conserved hypothetical protein	identified by similarity to SP:Q7MIW1%3B match to protein family HMM PF05779	gene	gene1930	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1932
AHA_1933	AHA_1933		AHA_1933	2111863	2113269	-	glycine/D-amino acid oxidase	identified by match to protein family HMM PF01266	gene	gene1931	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1933
AHA_1934	AHA_1934		AHA_1934	2113288	2115036	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene1932	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1934
AHA_1935	AHA_1935		AHA_1935	2115033	2116127	-	ferric cations import ATP-binding protein FbpC 2	identified by match to protein family HMM PF00005	gene	gene1933	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1935
AHA_1936	AHA_1936		AHA_1936	2116400	2117419	-	ABC transporter%2C periplasmic binding protein	identified by match to protein family HMM PF01547	gene	gene1934	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1936
AHA_1937	AHA_1937		AHA_1937	2117540	2118484	-	2-aminoethylphosphonate transport%2C repressor	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702	gene	gene1935	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1937
AHA_1938	AHA_1938	phnW	phnW	2118513	2119655	+	2-aminoethylphosphonate--pyruvate transaminase	identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR02326	gene	gene1936	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1938
AHA_1939	AHA_1939		AHA_1939	2119652	2121076	+	acetylornithine aminotransferase	identified by match to protein family HMM PF00202	gene	gene1937	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1939
AHA_1940	AHA_1940	phnX	phnX	2121069	2121908	+	phosphonoacetaldehyde hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01422%3B match to protein family HMM TIGR01509	gene	gene1938	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1940
AHA_1941	AHA_1941	pflB	pflB	2122032	2124353	-	formate acetyltransferase	identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01255	gene	gene1939	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1941
AHA_1942	AHA_1942		AHA_1942	2124360	2125208	-	putative formate transporter FocA	identified by similarity to SP:P21501%3B match to protein family HMM PF01226%3B match to protein family HMM TIGR00790	gene	gene1940	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1942
AHA_1943	AHA_1943		AHA_1943	2125589	2127349	-	conserved hypothetical protein	identified by match to protein family HMM PF02624%3B match to protein family HMM TIGR00702	gene	gene1941	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1943
AHA_1944	AHA_1944		AHA_1944	2127477	2127791	-	SugE protein	identified by match to protein family HMM PF00893	gene	gene1942	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1944
AHA_1945	AHA_1945	asd-1	asd-1	2128131	2129246	+	aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01745	gene	gene1943	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1945
AHA_1946	AHA_1946		AHA_1946	2129849	2132626	+	peptidase%2C M16B family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene1944	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1946
AHA_1947	AHA_1947		AHA_1947	2132723	2133886	-	methionine gamma-lyase	identified by match to protein family HMM PF01053	gene	gene1945	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1947
AHA_1948	AHA_1948		AHA_1948	2133979	2135049	-	2OG-Fe(II) oxygenase superfamily protein	identified by match to protein family HMM PF03171	gene	gene1946	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1948
AHA_1949	AHA_1949		AHA_1949	2135510	2136148	-	YwnB	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370	gene	gene1947	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1949
AHA_1950	AHA_1950		AHA_1950	2136250	2137155	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1948	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1950
AHA_1951	AHA_1951		AHA_1951	2137281	2138021	-	acetoacetyl-CoA reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM TIGR01829	gene	gene1949	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1951
AHA_1952	AHA_1952		AHA_1952	2138205	2139182	+	transcriptional activator	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene1950	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1952
AHA_1953	AHA_1953		AHA_1953	2139436	2141580	+	ferrichrome-iron receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783	gene	gene1951	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1953
AHA_1954	AHA_1954		AHA_1954	2141619	2142425	+	conserved hypothetical protein		gene	gene1952	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1954
AHA_1955	AHA_1955	metR	metR	2142470	2143390	-	HTH-type transcriptional regulator MetR	identified by similarity to SP:P0A9F9%3B match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene1953	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1955
AHA_1956	AHA_1956	metE	metE	2143564	2145837	+	5-methyltetrahydropteroyltriglutamate--homocysteine S-methyltransferase	identified by match to protein family HMM PF01717%3B match to protein family HMM TIGR01371	gene	gene1954	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1956
AHA_1957	AHA_1957		AHA_1957	2145925	2147046	-	heptosyltransferase family	identified by match to protein family HMM PF01075	gene	gene1955	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1957
AHA_1958	AHA_1958		AHA_1958	2147332	2148459	+	HPP family protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF04982	gene	gene1956	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1958
AHA_1959	AHA_1959		AHA_1959	2148502	2150436	-	amidohydrolase family	identified by match to protein family HMM PF07969	gene	gene1957	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1959
AHA_1960	AHA_1960		AHA_1960	2150636	2151295	+	putative transcription regulator	identified by match to protein family HMM PF00440	gene	gene1958	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1960
AHA_1961	AHA_1961		AHA_1961	2151391	2152644	-	D-amino acid dehydrogenase small subunit	identified by match to protein family HMM PF01266	gene	gene1959	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1961
AHA_1962	AHA_1962		AHA_1962	2152796	2154316	-	cryptochrome/photolyase	identified by match to protein family HMM PF04244	gene	gene1960	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1962
AHA_1963	AHA_1963		AHA_1963	2154952	2156337	+	tyrosine phenol-lyase	identified by match to protein family HMM PF01212	gene	gene1961	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1963
AHA_1964	AHA_1964		AHA_1964	2156421	2157365	-	periplasmic binding protein	identified by match to protein family HMM PF01497	gene	gene1962	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1964
AHA_1965	AHA_1965		AHA_1965	2157522	2158277	+	phosphopantetheinyl transferase	identified by similarity to GB:AAG28384.1%3B match to protein family HMM PF01648	gene	gene1963	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1965
AHA_1966	AHA_1966		AHA_1966	2158339	2159142	-	ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene1964	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1966
AHA_1967	AHA_1967		AHA_1967	2159186	2160331	-	ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene1965	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1967
AHA_1968	AHA_1968		AHA_1968	2160267	2161283	-	ABC transporter%2C iron chelate uptake transporter (FeCT) family%2C permease protein	identified by match to protein family HMM PF01032	gene	gene1966	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1968
AHA_1969	AHA_1969		AHA_1969	2161351	2163324	-	TonB-dependent siderophore receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715	gene	gene1967	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1969
AHA_1970	AHA_1970		AHA_1970	2163382	2164800	-	multidrug transporter	identified by similarity to GB:BAD13430.1%3B match to protein family HMM PF07690	gene	gene1968	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1970
AHA_1971	AHA_1971		AHA_1971	2164862	2165614	+	conserved hypothetical protein		gene	gene1969	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1971
AHA_1972	AHA_1972		AHA_1972	2165675	2166169	-	inner membrane protein YfeZ		gene	gene1970	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1972
AHA_1973	AHA_1973	corA	corA	2166290	2167237	-	magnesium and cobalt transport protein CorA	identified by match to protein family HMM PF01544%3B match to protein family HMM TIGR00383	gene	gene1971	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1973
AHA_1974	AHA_1974		AHA_1974	2167650	2167757	-	electron transfer flavoprotein-ubiquinone oxidoreductase		gene	gene1972	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1974
AHA_1975	AHA_1975		AHA_1975	2167757	2169400	-	electron transfer flavoprotein-ubiquinone oxidoreductase	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266%3B match to protein family HMM PF05187	gene	gene1973	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1975
AHA_1976	AHA_1976		AHA_1976	2169516	2170274	+	electron transfer flavoprotein beta-subunit	identified by match to protein family HMM PF01012	gene	gene1974	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1976
AHA_1977	AHA_1977		AHA_1977	2170375	2171301	+	electron transfer flavoprotein alpha-subunit	identified by match to protein family HMM PF00766%3B match to protein family HMM PF01012	gene	gene1975	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1977
AHA_1978	AHA_1978	serC	serC	2171525	2172613	+	phosphoserine aminotransferase	identified by match to protein family HMM PF00266%3B match to protein family HMM TIGR01364	gene	gene1976	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1978
AHA_1979	AHA_1979	aroA	aroA	2172701	2174068	+	3-phosphoshikimate 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01356	gene	gene1977	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1979
AHA_1980	AHA_1980		AHA_1980	2174282	2175337	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR00034	gene	gene1978	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1980
AHA_1981	AHA_1981		AHA_1981	2175425	2177035	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene1979	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1981
AHA_1982	AHA_1982		AHA_1982	2177274	2178653	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene1980	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1982
AHA_1983	AHA_1983	xseA	xseA	2178725	2180089	-	exodeoxyribonuclease VII%2C large subunit	identified by match to protein family HMM PF01336%3B match to protein family HMM PF02601%3B match to protein family HMM TIGR00237	gene	gene1981	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1983
AHA_1984	AHA_1984		AHA_1984	2180197	2181126	-	putative transporter	identified by match to protein family HMM PF00892	gene	gene1982	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1984
AHA_1985	AHA_1985		AHA_1985	2181265	2181684	-	biopolymer transport exbD1 protein	identified by match to protein family HMM PF02472	gene	gene1983	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1985
AHA_1986	AHA_1986		AHA_1986	2181684	2182439	-	MotA/TolQ/ExbB proton channel family protein	identified by match to protein family HMM PF01618	gene	gene1984	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1986
AHA_1987	AHA_1987	tonB-1	tonB-1	2182442	2183245	-	outer membrane receptor-mediated transport energizer protein TonB	identified by match to protein family HMM PF03544%3B match to protein family HMM TIGR01352	gene	gene1985	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1987
AHA_1988	AHA_1988		AHA_1988	2183497	2185383	-	Low affinity potassium transport system protein kup	identified by match to protein family HMM PF02705	gene	gene1986	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1988
AHA_1989	AHA_1989	guaB	guaB	2185831	2187294	+	inosine-5'-monophosphate dehydrogenase	identified by match to protein family HMM PF00478%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01302	gene	gene1987	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1989
AHA_1990	AHA_1990		AHA_1990	2187378	2188967	+	GMP synthase (glutamine-hydrolyzing)	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00958%3B match to protein family HMM TIGR00884%3B match to protein family HMM TIGR00888	gene	gene1988	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1990
AHA_1991	AHA_1991		AHA_1991	2189196	2189618	+	conserved hypothetical protein		gene	gene1989	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1991
AHA_1992	AHA_1992		AHA_1992	2190341	2191150	+	conserved hypothetical protein		gene	gene1990	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1992
AHA_1993	AHA_1993		AHA_1993	2191492	2192319	-	ada regulatory protein	identified by match to protein family HMM PF00165%3B match to protein family HMM PF01035%3B match to protein family HMM TIGR00589	gene	gene1991	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1993
AHA_1994	AHA_1994		AHA_1994	2192371	2193282	-	glucose 1-dehydrogenase	identified by match to protein family HMM PF00106	gene	gene1992	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1994
AHA_1995	AHA_1995		AHA_1995	2193264	2194799	+	protein kinase:Leucine-rich repeat	identified by match to protein family HMM PF00069%3B match to protein family HMM PF00560	gene	gene1993	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1995
AHA_1996	AHA_1996	tpm	tpm	2195015	2195668	+	thiopurine S-methyltransferase	identified by similarity to SP:O86262%3B match to protein family HMM PF05724	gene	gene1994	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1996
AHA_1997	AHA_1997		AHA_1997	2195977	2198751	-	peptidase%2C insulinase family	identified by match to protein family HMM PF00675%3B match to protein family HMM PF05193	gene	gene1995	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1997
AHA_1998	AHA_1998	sixA	sixA	2198914	2199381	+	phosphohistidine phosphatase SixA	identified by similarity to SP:P76502%3B match to protein family HMM PF00300%3B match to protein family HMM TIGR00249	gene	gene1996	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1998
AHA_1999	AHA_1999		AHA_1999	2199506	2199721	+	conserved hypothetical protein	identified by match to protein family HMM PF06526	gene	gene1997	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_1999
AHA_2000	AHA_2000		AHA_2000	2199922	2200839	+	transporter%2C 10 TMS drug/metabolite exporter (DME) family	identified by match to protein family HMM PF00892	gene	gene1998	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2000
AHA_2001	AHA_2001		AHA_2001	2200889	2202505	-	periplasmic murein peptide-binding protein	identified by match to protein family HMM PF00496	gene	gene1999	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2001
AHA_2002	AHA_2002	fbp	fbp	2202890	2203924	+	fructose-1%2C6-bisphosphatase	identified by match to protein family HMM PF00316	gene	gene2000	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2002
AHA_2003	AHA_2003	mfd	mfd	2204164	2207628	-	transcription-repair coupling factor	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF02559%3B match to protein family HMM PF03461%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00580	gene	gene2001	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2003
AHA_2004	AHA_2004		AHA_2004	2207638	2208213	-	conserved hypothetical protein		gene	gene2002	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2004
AHA_2005	AHA_2005	lolC	lolC	2208290	2209525	+	lipoprotein-releasing system transmembrane protein LolC	identified by similarity to SP:P75956%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212	gene	gene2003	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2005
AHA_2006	AHA_2006	lolD	lolD	2209518	2210300	+	lipoprotein releasing system%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR02211	gene	gene2004	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2006
AHA_2007	AHA_2007	lolE	lolE	2210300	2211541	+	lipoprotein releasing system%2C transmembrane protein LolE	identified by similarity to SP:P75958%3B match to protein family HMM PF02687%3B match to protein family HMM TIGR02212	gene	gene2005	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2007
AHA_2008	AHA_2008		AHA_2008	2211626	2212216	-	5'-nucleotidase YfbR	identified by match to protein family HMM PF01966	gene	gene2006	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2008
AHA_2009	AHA_2009		AHA_2009	2212290	2212724	-	putative membrane protein	identified by match to protein family HMM PF03733	gene	gene2007	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2009
AHA_2010	AHA_2010	tig	tig	2213153	2214463	+	trigger factor	identified by match to protein family HMM PF00254%3B match to protein family HMM PF05697%3B match to protein family HMM PF05698%3B match to protein family HMM TIGR00115	gene	gene2008	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2010
AHA_2011	AHA_2011	clpP	clpP	2214571	2215173	+	ATP-dependent Clp protease%2C proteolytic subunit ClpP	identified by match to protein family HMM PF00574%3B match to protein family HMM TIGR00493	gene	gene2009	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2011
AHA_2012	AHA_2012	clpX	clpX	2215320	2216594	+	ATP-dependent Clp protease%2C ATP-binding subunit ClpX	identified by match to protein family HMM PF00004%3B match to protein family HMM PF06689%3B match to protein family HMM PF07724%3B match to protein family HMM TIGR00382	gene	gene2010	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2012
AHA_2013	AHA_2013	lon	lon	2216736	2219090	+	ATP-dependent protease La	identified by match to protein family HMM PF00004%3B match to protein family HMM PF02190%3B match to protein family HMM PF05362%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00763	gene	gene2011	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2013
AHA_2014	AHA_2014		AHA_2014	2219331	2219603	+	DNA-binding protein HU-beta	identified by match to protein family HMM PF00216	gene	gene2012	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2014
AHA_2015	AHA_2015	ppiD	ppiD	2219758	2221668	+	peptidylprolyl cis-trans isomerase D	identified by similarity to SP:P77241%3B match to protein family HMM PF00639	gene	gene2013	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2015
AHA_2016	AHA_2016		AHA_2016	2221894	2223486	-	ABC transporter ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2014	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2016
AHA_2017	AHA_2017		AHA_2017	2223672	2224802	-		phage integrase family protein%2C authentic point mutation%3B this gene contains a premature stop which is not the result of sequencing error%3B identified by match to protein family HMM PF00589	pseudogene	gene2015	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2017
AHA_2018	AHA_2018		AHA_2018	2224945	2225355	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2016	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2018
AHA_2019	AHA_2019		AHA_2019	2225454	2225855	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2017	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2019
AHA_2020	AHA_2020		AHA_2020	2226502	2227989	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2018	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2020
AHA_2021	AHA_2021		AHA_2021	2228171	2228362	-	conserved hypothetical protein		gene	gene2019	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2021
AHA_2022	AHA_2022		AHA_2022	2229144	2229428	-	DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2020	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2022
AHA_2023	AHA_2023		AHA_2023	2229994	2231145	-	conserved hypothetical protein	identified by match to protein family HMM PF06114	gene	gene2021	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2023
AHA_2024	AHA_2024		AHA_2024	2232078	2232257	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2022	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2024
AHA_2025	AHA_2025		AHA_2025	2232485	2233090	-	putative DNA-binding protein	identified by match to protein family HMM PF01381	gene	gene2023	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2025
AHA_2026	AHA_2026		AHA_2026	2233478	2233867	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2024	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2026
AHA_2027	AHA_2027		AHA_2027	2234529	2235266	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2025	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2027
AHA_2028	AHA_2028		AHA_2028	2235244	2235726	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2026	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2028
AHA_2029	AHA_2029		AHA_2029	2236299	2236766	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2027	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2029
AHA_2030	AHA_2030		AHA_2030	2237161	2237826	-	conserved hypothetical protein		gene	gene2028	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2030
AHA_2031	AHA_2031		AHA_2031	2237965	2238360	-	conserved hypothetical protein		gene	gene2029	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2031
AHA_2032	AHA_2032		AHA_2032	2238820	2239605	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2030	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2032
AHA_2033	AHA_2033		AHA_2033	2239584	2240438	+	conserved hypothetical protein	identified by similarity to GB:AAV82456.1	gene	gene2031	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2033
AHA_2034	AHA_2034		AHA_2034	2241671	2241805	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2032	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2034
AHA_2035	AHA_2035		AHA_2035	2242283	2243191	+	putative RNA-dependent DNA polymerase	identified by match to protein family HMM PF00078	gene	gene2033	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2035
AHA_2036	AHA_2036		AHA_2036	2243181	2244851	+	RecF/RecN/SMC family protein	identified by match to protein family HMM PF02463	gene	gene2034	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2036
AHA_2037	AHA_2037		AHA_2037	2244835	2245503	+	conserved hypothetical protein TIGR02646	identified by match to protein family HMM TIGR02646	gene	gene2035	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2037
AHA_2038	AHA_2038		AHA_2038	2245549	2246283	+	phage regulatory protein%2C Rha family	identified by match to protein family HMM TIGR02681	gene	gene2036	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2038
AHA_2039	AHA_2039		AHA_2039	2246290	2246730	+	NinB protein	identified by match to protein family HMM PF05772	gene	gene2037	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2039
AHA_2040	AHA_2040		AHA_2040	2246727	2247044	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2038	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2040
AHA_2041	AHA_2041		AHA_2041	2247041	2247463	+	conserved hypothetical protein		gene	gene2039	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2041
AHA_2042	AHA_2042		AHA_2042	2247460	2248161	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02642	gene	gene2040	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2042
AHA_2043	AHA_2043		AHA_2043	2248208	2248891	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2041	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2043
AHA_2044	AHA_2044	umuC	umuC	2248997	2250271	-	protein UmuC	identified by similarity to SP:P04152%3B match to protein family HMM PF00817	gene	gene2042	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2044
AHA_2045	AHA_2045	umuD	umuD	2250275	2250697	-	umuD protein	identified by match to protein family HMM PF00717	gene	gene2043	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2045
AHA_2046	AHA_2046		AHA_2046	2250885	2251949	+	conserved hypothetical protein		gene	gene2044	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2046
AHA_2047	AHA_2047		AHA_2047	2252032	2252442	+	DNA-binding protein Hns	identified by match to protein family HMM PF00816	gene	gene2045	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2047
AHA_2048	AHA_2048		AHA_2048	2252526	2252999	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2046	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2048
AHA_2049	AHA_2049		AHA_2049	2253020	2253631	+	conserved hypothetical protein		gene	gene2047	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2049
AHA_2050	AHA_2050		AHA_2050	2253952	2254443	+	phage lysozyme	identified by match to protein family HMM PF00959	gene	gene2048	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2050
AHA_2051	AHA_2051		AHA_2051	2254488	2254838	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2050	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2051
AHA_2052	AHA_2052		AHA_2052	2254269	2254940	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2049	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2052
AHA_2053	AHA_2053		AHA_2053	2255023	2255919	+	putative small subunit bacteriophage terminase		gene	gene2051	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2053
AHA_2054	AHA_2054		AHA_2054	2255959	2256705	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2052	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2054
AHA_2055	AHA_2055		AHA_2055	2256773	2257837	+	large subunit terminase		gene	gene2053	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2055
AHA_2056	AHA_2056		AHA_2056	2260336	2261991	-	cation/acetate symporter ActP	identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813	gene	gene2054	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2056
AHA_2057	AHA_2057		AHA_2057	2261988	2262299	-	conserved hypothetical protein	identified by match to protein family HMM PF04341	gene	gene2055	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2057
AHA_2058	AHA_2058		AHA_2058	2262409	2263035	-	DNA polymerase III%2C epsilon subunit	identified by match to protein family HMM PF00929	gene	gene2056	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2058
AHA_2059	AHA_2059		AHA_2059	2263038	2264825	-	cyclic nucleotide binding protein/2 CBS domains	identified by match to protein family HMM PF00027%3B match to protein family HMM PF00571%3B match to protein family HMM PF03445	gene	gene2057	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2059
AHA_2060	AHA_2060		AHA_2060	2265002	2265808	+	enoyl-CoA hydratase/isomerase family protein	identified by match to protein family HMM PF00378	gene	gene2058	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2060
AHA_2061	AHA_2061		AHA_2061	2266221	2266472	+	phage transcriptional activator%2C Ogr/Delta%2C putative	identified by match to protein family HMM PF04606	gene	gene2059	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2061
AHA_2062	AHA_2062		AHA_2062	2266720	2267709	-	conserved hypothetical protein		gene	gene2060	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2062
AHA_2063	AHA_2063		AHA_2063	2267696	2270161	-	conserved hypothetical protein		gene	gene2061	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2063
AHA_2064	AHA_2064		AHA_2064	2270253	2270723	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2062	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2064
AHA_2065	AHA_2065		AHA_2065	2270973	2271560	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2063	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2065
AHA_2066	AHA_2066		AHA_2066	2271560	2271940	-	A protein	identified by match to protein family HMM PF05840	gene	gene2064	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2066
AHA_2067	AHA_2067		AHA_2067	2272025	2273524	-	sodium:alanine symporter family protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene2065	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2067
AHA_2068	AHA_2068		AHA_2068	2273674	2274276	+	protein PhnO	identified by match to protein family HMM PF00583	gene	gene2066	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2068
AHA_2069	AHA_2069		AHA_2069	2274295	2275104	+	conserved hypothetical protein	identified by match to protein family HMM PF06167	gene	gene2067	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2069
AHA_2070	AHA_2070		AHA_2070	2275187	2275783	-	membrane protein%2C GPR1/FUN34/yaaH family	identified by match to protein family HMM PF01184	gene	gene2068	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2070
AHA_2071	AHA_2071		AHA_2071	2276469	2279369	-	conserved hypothetical protein	identified by match to protein family HMM PF05359	gene	gene2069	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2071
AHA_2072	AHA_2072		AHA_2072	2279418	2280179	-	periplasmic binding protein		gene	gene2070	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2072
AHA_2073	AHA_2073		AHA_2073	2280217	2280639	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene2071	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2073
AHA_2074	AHA_2074		AHA_2074	2280651	2281607	-	hydroxymethylglutaryl-CoA lyase	identified by match to protein family HMM PF00682	gene	gene2072	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2074
AHA_2075	AHA_2075		AHA_2075	2281604	2283568	-	methylcrotonoyl-CoA carboxylase alpha chain	identified by match to protein family HMM PF00289%3B match to protein family HMM PF00364%3B match to protein family HMM PF01071%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786	gene	gene2073	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2075
AHA_2076	AHA_2076		AHA_2076	2283678	2284517	-	enoyl-CoA hydratase/isomerase family protein	identified by match to protein family HMM PF00378	gene	gene2074	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2076
AHA_2077	AHA_2077		AHA_2077	2284527	2286128	-	methylcrotonoyl-CoA carboxylase beta chain	identified by match to protein family HMM PF01039	gene	gene2075	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2077
AHA_2078	AHA_2078		AHA_2078	2286125	2287273	-	isovaleryl-CoA dehydrogenase 2	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene2076	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2078
AHA_2079	AHA_2079	mmsA-2	mmsA-2	2287520	2289031	+	methylmalonate-semialdehyde dehydrogenase	identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01722	gene	gene2077	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2079
AHA_2080	AHA_2080		AHA_2080	2289031	2290254	+	acyl-CoA dehydrogenase family member 8	identified by match to protein family HMM PF00441%3B match to protein family HMM PF02770%3B match to protein family HMM PF02771%3B match to protein family HMM PF08028	gene	gene2078	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2080
AHA_2081	AHA_2081		AHA_2081	2290395	2291207	+	3-hydroxybutyryl-CoA dehydratase	identified by match to protein family HMM PF00378	gene	gene2079	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2081
AHA_2082	AHA_2082		AHA_2082	2291267	2292370	+	enoyl-CoA hydratase/isomerase family protein	identified by match to protein family HMM PF00378	gene	gene2080	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2082
AHA_2083	AHA_2083	mmsB	mmsB	2292398	2293318	+	3-hydroxyisobutyrate dehydrogenase	identified by match to protein family HMM PF03446%3B match to protein family HMM TIGR01692	gene	gene2081	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2083
AHA_2084	AHA_2084		AHA_2084	2293390	2294151	+	3-oxoacyl-[acyl-carrier-protein] reductase	identified by match to protein family HMM PF00106	gene	gene2082	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2084
AHA_2085	AHA_2085		AHA_2085	2294541	2295977	+	arginine/ornithine antiporter	identified by match to protein family HMM PF00324%3B match to protein family HMM PF03845%3B match to protein family HMM TIGR00905	gene	gene2083	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2085
AHA_2086	AHA_2086		AHA_2086	2296068	2296856	+	putative membrane protein	identified by match to protein family HMM PF01925	gene	gene2084	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2086
AHA_2087	AHA_2087		AHA_2087	2297699	2298637	-	transcriptional regulator%2C LysR family protein	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2085	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2087
AHA_2088	AHA_2088		AHA_2088	2299168	2299698	+	EAL domain%2C putative		gene	gene2086	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2088
AHA_2089	AHA_2089		AHA_2089	2299629	2301302	+	cyclic diguanylate phosphodiesterase (EAL) domain protein	identified by match to protein family HMM PF00563	gene	gene2087	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2089
AHA_2090	AHA_2090		AHA_2090	2301307	2302182	-	transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2088	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2090
AHA_2091	AHA_2091		AHA_2091	2302339	2303772	+	beta-glucosidase	identified by match to protein family HMM PF00232	gene	gene2089	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2091
AHA_2092	AHA_2092		AHA_2092	2303883	2305706	-	GGDEF family protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2090	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2092
AHA_2093	AHA_2093		AHA_2093	2305808	2306293	-	oxidoreductase molybdopterin binding domain%2C putative	identified by match to protein family HMM PF00174	gene	gene2091	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2093
AHA_2094	AHA_2094		AHA_2094	2306540	2307886	+	HD domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene2092	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2094
AHA_2095	AHA_2095		AHA_2095	2307932	2308687	-	reductase	identified by match to protein family HMM PF00106	gene	gene2093	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2095
AHA_2096	AHA_2096		AHA_2096	2308814	2309767	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2094	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2096
AHA_2097	AHA_2097		AHA_2097	2309932	2310777	+	endonuclease IV	identified by match to protein family HMM PF01261%3B match to protein family HMM TIGR00587	gene	gene2095	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2097
AHA_2098	AHA_2098		AHA_2098	2310811	2311800	+	oxidoreductase%2C NAD-binding	identified by match to protein family HMM PF01408	gene	gene2096	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2098
AHA_2099	AHA_2099		AHA_2099	2311915	2312823	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2097	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2099
AHA_2100	AHA_2100		AHA_2100	2312923	2313906	+	tellurite resistance protein	identified by match to protein family HMM PF03595	gene	gene2098	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2100
AHA_2101	AHA_2101	msbB	msbB	2314174	2315163	+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	identified by match to protein family HMM PF03279%3B match to protein family HMM TIGR02208	gene	gene2099	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2101
AHA_2102	AHA_2102		AHA_2102	2315332	2316330	+	lipid A biosynthesis (KDO)2-(lauroyl)-lipid IVA acyltransferase	identified by match to protein family HMM PF03279	gene	gene2100	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2102
AHA_2103	AHA_2103		AHA_2103	2316472	2317332	+	RIO1 protein	identified by match to protein family HMM PF01163	gene	gene2101	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2103
AHA_2104	AHA_2104		AHA_2104	2317384	2317941	-	probable acetyltransferase	identified by match to protein family HMM PF00583	gene	gene2102	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2104
AHA_2105	AHA_2105		AHA_2105	2317917	2319290	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2103	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2105
AHA_2106	AHA_2106		AHA_2106	2319364	2320089	-	YbaK/prolyl-tRNA synthetase domain protein	identified by match to protein family HMM PF04073	gene	gene2104	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2106
AHA_2107	AHA_2107	polB	polB	2320065	2322494	+	DNA polymerase II	identified by match to protein family HMM PF00136%3B match to protein family HMM PF03104	gene	gene2105	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2107
AHA_2108	AHA_2108		AHA_2108	2322629	2322705	-	tRNA-Val		tRNA	gene2106	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2108
AHA_2109	AHA_2109		AHA_2109	2322743	2322819	-	tRNA-Val		tRNA	gene2107	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2109
AHA_2110	AHA_2110		AHA_2110	2322825	2322902	-	tRNA-OTHER		pseudogenic_tRNA	gene2108	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2110
AHA_2111	AHA_2111		AHA_2111	2322941	2323017	-	tRNA-Val		tRNA	gene2109	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2111
AHA_2112	AHA_2112		AHA_2112	2323035	2323111	-	tRNA-Val		tRNA	gene2110	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2112
AHA_2113	AHA_2113		AHA_2113	2323124	2323200	-	tRNA-Val		tRNA	gene2111	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2113
AHA_2114	AHA_2114		AHA_2114	2323361	2324740	-	multidrug resistance protein MdtK	identified by similarity to SP:P37340%3B match to protein family HMM PF01554%3B match to protein family HMM TIGR00797	gene	gene2112	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2114
AHA_2115	AHA_2115		AHA_2115	2324887	2325093	-	conserved hypothetical protein		gene	gene2113	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2115
AHA_2116	AHA_2116	ribE-1	ribE-1	2325224	2325841	+	riboflavin synthase%2C alpha subunit	identified by similarity to SP:P29015%3B match to protein family HMM PF00677%3B match to protein family HMM TIGR00187	gene	gene2114	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2116
AHA_2117	AHA_2117		AHA_2117	2325931	2326134	-	conserved domain protein		gene	gene2115	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2117
AHA_2118	AHA_2118		AHA_2118	2326273	2326932	-	phosphatase YniC	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene2116	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2118
AHA_2119	AHA_2119	purT	purT	2327059	2328237	-	phosphoribosylglycinamide formyltransferase 2	identified by match to protein family HMM PF01071%3B match to protein family HMM PF02222%3B match to protein family HMM TIGR01142	gene	gene2117	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2119
AHA_2120	AHA_2120		AHA_2120	2328323	2329273	-	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene2118	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2120
AHA_2121	AHA_2121		AHA_2121	2329331	2330026	+	acyl carrier protein phosphodiesterase	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene2119	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2121
AHA_2122	AHA_2122		AHA_2122	2330123	2330299	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2120	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2122
AHA_2123	AHA_2123		AHA_2123	2330466	2330654	-	conserved hypothetical protein		gene	gene2121	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2123
AHA_2124	AHA_2124		AHA_2124	2330651	2331217	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene2122	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2124
AHA_2125	AHA_2125		AHA_2125	2331290	2332504	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2123	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2125
AHA_2126	AHA_2126		AHA_2126	2331344	2332579	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2124	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2126
AHA_2127	AHA_2127		AHA_2127	2332495	2333589	+	nucleic acid binding protein		gene	gene2125	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2127
AHA_2128	AHA_2128		AHA_2128	2333590	2333901	+	conserved hypothetical protein	identified by match to protein family HMM PF06945	gene	gene2126	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2128
AHA_2129	AHA_2129		AHA_2129	2333943	2334443	-	conserved hypothetical protein		gene	gene2127	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2129
AHA_2130	AHA_2130	mtgA	mtgA	2334565	2335272	-	monofunctional biosynthetic peptidoglycan transglycosylase	identified by match to protein family HMM PF00912%3B match to protein family HMM TIGR02070	gene	gene2128	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2130
AHA_2131	AHA_2131		AHA_2131	2335326	2335634	-	conserved hypothetical protein		gene	gene2129	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2131
AHA_2132	AHA_2132	minE	minE	2335842	2336108	-	cell division topological specificity factor MinE	identified by match to protein family HMM PF03776%3B match to protein family HMM TIGR01215	gene	gene2130	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2132
AHA_2133	AHA_2133	minD	minD	2336111	2336923	-	septum site-determining protein MinD	identified by match to protein family HMM PF01656%3B match to protein family HMM TIGR01968	gene	gene2131	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2133
AHA_2134	AHA_2134	minC	minC	2336942	2337664	-	septum site-determining protein MinC	identified by match to protein family HMM PF03775%3B match to protein family HMM PF05209%3B match to protein family HMM TIGR01222	gene	gene2132	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2134
AHA_2135	AHA_2135		AHA_2135	2337772	2338053	+	conserved hypothetical protein	identified by match to protein family HMM PF05166	gene	gene2133	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2135
AHA_2136	AHA_2136		AHA_2136	2338050	2339009	+	membrane-bound lytic murein transglycosylase B	identified by match to protein family HMM TIGR02283	gene	gene2134	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2136
AHA_2137	AHA_2137	sdaA-1	sdaA-1	2339228	2340598	-	L-serine ammonia-lyase	identified by match to protein family HMM PF03313%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00720	gene	gene2135	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2137
AHA_2138	AHA_2138	sdaA-2	sdaA-2	2340876	2342258	-	L-serine ammonia-lyase	identified by match to protein family HMM PF03313%3B match to protein family HMM PF03315%3B match to protein family HMM TIGR00720	gene	gene2136	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2138
AHA_2139	AHA_2139		AHA_2139	2342462	2342788	-	conserved hypothetical protein	identified by match to protein family HMM PF06865	gene	gene2137	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2139
AHA_2140	AHA_2140		AHA_2140	2343016	2344254	+	proton/glutamate symporter	identified by match to protein family HMM PF00375	gene	gene2138	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2140
AHA_2141	AHA_2141		AHA_2141	2344315	2344743	-	transcriptional regulator%2C MerR family	identified by match to protein family HMM PF00376	gene	gene2139	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2141
AHA_2142	AHA_2142		AHA_2142	2345992	2347215	-	sensory box/GGDEF family protein	identified by match to protein family HMM PF00563	gene	gene2141	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2142
AHA_2143	AHA_2143	atoB	atoB	2344832	2345995	+	acetyl-CoA acetyltransferase	identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930	gene	gene2140	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2143
AHA_2144	AHA_2144		AHA_2144	2347345	2348601	-	long-chain fatty acid transport protein	identified by match to protein family HMM PF03349	gene	gene2142	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2144
AHA_2145	AHA_2145		AHA_2145	2348855	2350153	-	long-chain fatty acid transport protein	identified by match to protein family HMM PF03349	gene	gene2143	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2145
AHA_2146	AHA_2146		AHA_2146	2350564	2351307	-	conserved hypothetical protein		gene	gene2144	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2146
AHA_2147	AHA_2147		AHA_2147	2351300	2351890	-	RNA polymerase sigma-70 factor%2C ECF subfamily	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937	gene	gene2145	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2147
AHA_2148	AHA_2148		AHA_2148	2351924	2353444	-	conserved hypothetical protein		gene	gene2146	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2148
AHA_2149	AHA_2149		AHA_2149	2353441	2354940	-	TPR domain protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene2147	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2149
AHA_2150	AHA_2150		AHA_2150	2354940	2355953	-	von Willebrand factor type A domain protein	identified by match to protein family HMM PF00092	gene	gene2148	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2150
AHA_2151	AHA_2151		AHA_2151	2356516	2357460	-	protein of unknown function	identified by match to protein family HMM PF01882	gene	gene2149	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2151
AHA_2152	AHA_2152		AHA_2152	2357441	2358391	-	MoxR protein	identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene2150	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2152
AHA_2153	AHA_2153	fadI	fadI	2358585	2359895	+	acetyl-CoA C-acyltransferase FadI	identified by match to protein family HMM PF00108%3B match to protein family HMM PF02803%3B match to protein family HMM TIGR01930%3B match to protein family HMM TIGR02446	gene	gene2151	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2153
AHA_2154	AHA_2154	fadJ	fadJ	2359895	2362042	+	fatty oxidation complex%2C alpha subunit FadJ	identified by match to protein family HMM PF00378%3B match to protein family HMM PF00725%3B match to protein family HMM PF02737%3B match to protein family HMM TIGR02440	gene	gene2152	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2154
AHA_2155	AHA_2155		AHA_2155	2362338	2362478	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02808	gene	gene2153	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2155
AHA_2156	AHA_2156		AHA_2156	2362578	2363228	+	YaeQ	identified by match to protein family HMM PF07152	gene	gene2154	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2156
AHA_2157	AHA_2157		AHA_2157	2363240	2364124	+	auxin Efflux Carrier	identified by match to protein family HMM PF03547	gene	gene2155	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2157
AHA_2158	AHA_2158		AHA_2158	2365002	2365982	-	conserved hypothetical protein		gene	gene2156	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2158
AHA_2159	AHA_2159		AHA_2159	2366991	2367407	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2157	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2159
AHA_2160	AHA_2160		AHA_2160	2367459	2369393	+	hypothetical sigma-54-dependent transcriptional regulator YgeV	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene2158	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2160
AHA_2161	AHA_2161		AHA_2161	2369822	2371009	+	aspartate/ornithine carbamoyltransferase%2C Asp/Orn binding domain family	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729	gene	gene2159	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2161
AHA_2162	AHA_2162		AHA_2162	2371137	2372336	+	diaminopropionate ammonia-lyase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01747	gene	gene2160	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2162
AHA_2163	AHA_2163		AHA_2163	2372520	2373677	+	peptidase%2C M20/M25/M40 family	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687	gene	gene2161	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2163
AHA_2164	AHA_2164	hydA	hydA	2373796	2375220	+	dihydropyrimidinase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969%3B match to protein family HMM TIGR02033	gene	gene2162	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2164
AHA_2165	AHA_2165	arcC-1	arcC-1	2375316	2376248	+	carbamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00746	gene	gene2163	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2165
AHA_2166	AHA_2166		AHA_2166	2376431	2377354	+	inner membrane transport protein YijE	identified by match to protein family HMM PF00892	gene	gene2164	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2166
AHA_2167	AHA_2167		AHA_2167	2377424	2379016	-	xanthine dehydrogenase accessory factor%2C putative subfamily%2C putative	identified by match to protein family HMM PF02625	gene	gene2165	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2167
AHA_2168	AHA_2168		AHA_2168	2379036	2379884	-	conserved hypothetical protein		gene	gene2166	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2168
AHA_2169	AHA_2169		AHA_2169	2379865	2380518	+	hypotehtical YgfJ		gene	gene2167	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2169
AHA_2170	AHA_2170		AHA_2170	2380939	2384049	+	pyridine nucleotide-disulphide oxidoreductase domain protein	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene2168	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2170
AHA_2171	AHA_2171		AHA_2171	2384080	2385408	+	protein SsnA	identified by match to protein family HMM PF01979	gene	gene2169	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2171
AHA_2172	AHA_2172		AHA_2172	2385489	2386265	+	FAD binding domain in molybdopterin dehydrogenase protein	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene2170	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2172
AHA_2173	AHA_2173		AHA_2173	2386262	2389159	+	possible hypoxanthine oxidase XdhD	identified by match to protein family HMM PF01315%3B match to protein family HMM PF01799%3B match to protein family HMM PF02738	gene	gene2171	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2173
AHA_2174	AHA_2174		AHA_2174	2389255	2390772	+	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801	gene	gene2172	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2174
AHA_2175	AHA_2175		AHA_2175	2390797	2392113	+	guanine deaminase	identified by match to protein family HMM PF01979%3B match to protein family HMM PF07969	gene	gene2173	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2175
AHA_2176	AHA_2176		AHA_2176	2392395	2393771	+	xanthine/uracil permease family protein	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916	gene	gene2174	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2176
AHA_2177	AHA_2177		AHA_2177	2394101	2396419	+	xanthine dehydrogenase%2C molybdenum binding subunit	identified by match to protein family HMM PF01315%3B match to protein family HMM PF02738	gene	gene2175	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2177
AHA_2178	AHA_2178		AHA_2178	2396412	2397290	+	xanthine dehydrogenase%2C FAD binding subunit	identified by match to protein family HMM PF00941%3B match to protein family HMM PF03450	gene	gene2176	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2178
AHA_2179	AHA_2179		AHA_2179	2397287	2397772	+	carbon monoxide dehydrogenase small chain	identified by match to protein family HMM PF00111%3B match to protein family HMM PF01799	gene	gene2177	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2179
AHA_2180	AHA_2180		AHA_2180	2398305	2401523	+	nuclease	identified by match to protein family HMM PF03160%3B match to protein family HMM PF03372	gene	gene2178	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2180
AHA_2181	AHA_2181		AHA_2181	2401661	2402206	-	surface antigen	identified by match to protein family HMM PF05433	gene	gene2179	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2181
AHA_2182	AHA_2182		AHA_2182	2402710	2402898	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2180	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2182
AHA_2183	AHA_2183		AHA_2183	2402958	2404484	-	putative transporter	identified by match to protein family HMM PF03600%3B match to protein family HMM PF03606	gene	gene2181	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2183
AHA_2184	AHA_2184		AHA_2184	2405120	2406742	+	AMP-binding protein	identified by match to protein family HMM PF00501	gene	gene2182	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2184
AHA_2185	AHA_2185		AHA_2185	2406798	2408375	+	KAP family P-loop domain protein	identified by match to protein family HMM PF07693	gene	gene2183	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2185
AHA_2186	AHA_2186		AHA_2186	2408415	2409050	-	histidine biosynthesis bifunctional protein hisIE	identified by match to protein family HMM PF01502%3B match to protein family HMM PF01503	gene	gene2184	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2186
AHA_2187	AHA_2187	hisF	hisF	2409043	2409816	-	imidazoleglycerol phosphate synthase%2C cyclase subunit	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00735	gene	gene2185	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2187
AHA_2188	AHA_2188		AHA_2188	2409997	2413968	-	PAS	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene2186	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2188
AHA_2189	AHA_2189		AHA_2189	2413965	2416118	-	PAS	identified by match to protein family HMM PF00989%3B match to protein family HMM TIGR00229	gene	gene2187	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2189
AHA_2190	AHA_2190		AHA_2190	2416111	2417220	-	response regulator receiver:Metal-dependent phosphohydrolase%2C HD subdomain	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966	gene	gene2188	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2190
AHA_2191	AHA_2191	hisA	hisA	2417386	2418129	-	phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase	identified by match to protein family HMM PF00977%3B match to protein family HMM TIGR00007	gene	gene2189	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2191
AHA_2192	AHA_2192	hisH	hisH	2418135	2418776	-	imidazole glycerol phosphate synthase%2C glutamine amidotransferase subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR01855	gene	gene2190	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2192
AHA_2193	AHA_2193		AHA_2193	2418776	2419927	-	histidine biosynthesis bifunctional protein HisB	identified by match to protein family HMM PF00475%3B match to protein family HMM TIGR01261%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662	gene	gene2191	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2193
AHA_2194	AHA_2194	hisC	hisC	2419943	2421013	-	histidinol-phosphate aminotransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM TIGR01141	gene	gene2192	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2194
AHA_2195	AHA_2195	hisD	hisD	2421010	2422335	-	histidinol dehydrogenase	identified by match to protein family HMM PF00815%3B match to protein family HMM TIGR00069	gene	gene2193	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2195
AHA_2196	AHA_2196	hisG	hisG	2422348	2423244	-	ATP phosphoribosyltransferase	identified by match to protein family HMM PF01634%3B match to protein family HMM PF08029%3B match to protein family HMM TIGR00070	gene	gene2194	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2196
AHA_2197	AHA_2197		AHA_2197	2423373	2423423	-	his operon leader peptide	identified by match to protein family HMM PF08047	gene	gene2195	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2197
AHA_2198	AHA_2198		AHA_2198	2423584	2423826	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2196	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2198
AHA_2199	AHA_2199		AHA_2199	2423894	2425816	+	ATP-dependent helicase%2C DinG family		gene	gene2197	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2199
AHA_2200	AHA_2200		AHA_2200	2425813	2425905	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2198	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2200
AHA_2201	AHA_2201		AHA_2201	2425935	2426627	+	glycoprotease family protein	identified by match to protein family HMM PF00814	gene	gene2199	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2201
AHA_2202	AHA_2202		AHA_2202	2426722	2427237	+	outer membrane lipoprotein%2C Slp family	identified by match to protein family HMM PF03843%3B match to protein family HMM TIGR00752	gene	gene2200	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2202
AHA_2203	AHA_2203		AHA_2203	2427255	2428112	+	hydrolase%2C alpha/beta fold family	identified by match to protein family HMM PF00561	gene	gene2201	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2203
AHA_2204	AHA_2204		AHA_2204	2428311	2429987	+	long-chain-fatty-acid--CoA ligase	identified by match to protein family HMM PF00501	gene	gene2202	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2204
AHA_2205	AHA_2205	rnd	rnd	2430057	2431196	+	ribonuclease D	identified by match to protein family HMM PF00570%3B match to protein family HMM PF01612%3B match to protein family HMM TIGR01388	gene	gene2203	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2205
AHA_2206	AHA_2206		AHA_2206	2431244	2432002	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2204	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2206
AHA_2207	AHA_2207		AHA_2207	2432097	2432465	-	DksA-type zinc finger protein		gene	gene2205	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2207
AHA_2208	AHA_2208		AHA_2208	2432563	2433507	-	tRNA-dihydrouridine synthase C	identified by match to protein family HMM PF01207	gene	gene2206	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2208
AHA_2209	AHA_2209		AHA_2209	2433726	2434103	+	putative membrane protein	identified by match to protein family HMM PF04304	gene	gene2207	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2209
AHA_2210	AHA_2210	apt	apt	2434133	2434780	+	adenine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01090	gene	gene2208	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2210
AHA_2211	AHA_2211	dnaX	dnaX	2434963	2437512	+	DNA polymerase III%2C subunits gamma and tau	identified by match to protein family HMM PF00004%3B match to protein family HMM TIGR02397	gene	gene2209	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2211
AHA_2212	AHA_2212		AHA_2212	2437628	2437957	+	conserved hypothetical protein	identified by match to protein family HMM PF02575%3B match to protein family HMM TIGR00103	gene	gene2210	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2212
AHA_2213	AHA_2213		AHA_2213	2438143	2439831	-	dolichyl-phosphate-mannose-protein mannosyltransferase family%2C putative	identified by match to protein family HMM PF02366	gene	gene2211	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2213
AHA_2214	AHA_2214		AHA_2214	2440212	2440325	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2212	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2214
AHA_2215	AHA_2215		AHA_2215	2440869	2441939	+	transcriptional regulator%2C LuxR family protein	identified by match to protein family HMM PF00196	gene	gene2213	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2215
AHA_2216	AHA_2216		AHA_2216	2442024	2442446	+	CBS domain protein	identified by match to protein family HMM PF00571	gene	gene2214	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2216
AHA_2217	AHA_2217	hrpA	hrpA	2442664	2446563	+	ATP-dependent helicase HrpA	identified by match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM PF07717%3B match to protein family HMM TIGR01967	gene	gene2215	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2217
AHA_2218	AHA_2218		AHA_2218	2446630	2447496	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2216	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2218
AHA_2219	AHA_2219		AHA_2219	2447522	2447890	+	ribosomal L25p family	identified by match to protein family HMM PF01386	gene	gene2217	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2219
AHA_2220	AHA_2220		AHA_2220	2448084	2451266	+	two-component system sensor protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518	gene	gene2218	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2220
AHA_2221	AHA_2221		AHA_2221	2452254	2452898	-	metallo-beta-lactamase family protein	identified by match to protein family HMM PF00753	gene	gene2220	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2221
AHA_2222	AHA_2222		AHA_2222	2451263	2452264	+	two-component system regulatory protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966	gene	gene2219	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2222
AHA_2223	AHA_2223		AHA_2223	2452926	2454026	-	tRNA 2-selenouridine synthase		gene	gene2221	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2223
AHA_2224	AHA_2224	selD	selD	2454023	2455060	-	selenide%2C water dikinase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00476	gene	gene2222	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2224
AHA_2225	AHA_2225		AHA_2225	2455446	2456630	-	putative acyltransferase	identified by match to protein family HMM PF01757	gene	gene2223	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2225
AHA_2226	AHA_2226		AHA_2226	2456891	2457535	+	glutathione S-transferase%2C N-terminal:Glutathione S-transferase%2C C-terminal	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene2224	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2226
AHA_2227	AHA_2227		AHA_2227	2458017	2459258	-	methyltransferase	identified by match to protein family HMM PF03602	gene	gene2225	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2227
AHA_2228	AHA_2228		AHA_2228	2459558	2461072	+	flagellin	identified by similarity to GB:AAC45642.1%3B match to protein family HMM PF00669%3B match to protein family HMM PF00700	gene	gene2226	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2228
AHA_2229	AHA_2229		AHA_2229	2461230	2462660	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2227	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2229
AHA_2230	AHA_2230		AHA_2230	2462746	2463018	+	acylphosphatase	identified by match to protein family HMM PF00708	gene	gene2228	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2230
AHA_2231	AHA_2231		AHA_2231	2463096	2463731	-	putative glutathione S-transferase protein	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene2229	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2231
AHA_2232	AHA_2232		AHA_2232	2463959	2464921	+	conserved hypothetical protein		gene	gene2230	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2232
AHA_2233	AHA_2233	metG	metG	2464976	2467009	-	methionyl-tRNA synthetase	identified by match to protein family HMM PF01588%3B match to protein family HMM TIGR00398%3B match to protein family HMM TIGR00399	gene	gene2231	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2233
AHA_2234	AHA_2234		AHA_2234	2467196	2468278	+	mrp protein	identified by match to protein family HMM PF01656	gene	gene2232	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2234
AHA_2235	AHA_2235	udk	udk	2468388	2469032	+	uridine kinase	identified by match to protein family HMM PF00485%3B match to protein family HMM TIGR00235	gene	gene2233	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2235
AHA_2236	AHA_2236	dcd	dcd	2469096	2469677	+	deoxycytidine triphosphate deaminase	identified by match to protein family HMM TIGR02274	gene	gene2234	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2236
AHA_2237	AHA_2237		AHA_2237	2469711	2469803	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2235	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2237
AHA_2238	AHA_2238		AHA_2238	2470085	2471554	+	Low-affinity inorganic phosphate transporter 1	identified by match to protein family HMM PF01384	gene	gene2236	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2238
AHA_2239	AHA_2239		AHA_2239	2472370	2475489	-	ribonuclease E	identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR00757	gene	gene2237	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2239
AHA_2240	AHA_2240		AHA_2240	2475862	2476845	+	ribosomal large subunit pseudouridine synthase C	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene2238	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2240
AHA_2241	AHA_2241		AHA_2241	2476845	2477492	+	HAD-superfamily hydrolase%2C subfamily IA	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene2239	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2241
AHA_2242	AHA_2242	maf-2	maf-2	2477570	2478280	-	septum formation protein Maf	identified by match to protein family HMM PF02545%3B match to protein family HMM TIGR00172	gene	gene2240	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2242
AHA_2243	AHA_2243		AHA_2243	2478335	2479528	+	multidrug resistance protein MdtL	identified by match to protein family HMM PF07690	gene	gene2241	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2243
AHA_2244	AHA_2244		AHA_2244	2479531	2480505	+	HTH-type transcriptional regulator YidZ	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2242	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2244
AHA_2245	AHA_2245		AHA_2245	2480575	2481240	+	conserved hypothetical protein		gene	gene2243	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2245
AHA_2246	AHA_2246		AHA_2246	2481489	2482010	+	conserved hypothetical protein	identified by match to protein family HMM PF02620	gene	gene2244	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2246
AHA_2247	AHA_2247	rpmF	rpmF	2482030	2482197	+	ribosomal protein L32	identified by match to protein family HMM PF01783%3B match to protein family HMM TIGR01031	gene	gene2245	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2247
AHA_2248	AHA_2248	plsX	plsX	2482207	2483226	+	fatty acid/phospholipid synthesis protein PlsX	identified by match to protein family HMM PF02504%3B match to protein family HMM TIGR00182	gene	gene2246	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2248
AHA_2249	AHA_2249	fabH	fabH	2483234	2484193	+	3-oxoacyl-[acyl-carrier-protein] synthase III	identified by match to protein family HMM TIGR00747	gene	gene2247	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2249
AHA_2250	AHA_2250	fabD	fabD	2484263	2485198	+	malonyl CoA-acyl carrier protein transacylase	identified by match to protein family HMM PF00698%3B match to protein family HMM TIGR00128	gene	gene2248	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2250
AHA_2251	AHA_2251	fabG	fabG	2485212	2485946	+	3-oxoacyl-(acyl-carrier-protein) reductase	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01370%3B match to protein family HMM TIGR01830	gene	gene2249	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2251
AHA_2252	AHA_2252	acpP	acpP	2486104	2486340	+	acyl carrier protein	identified by match to protein family HMM PF00550%3B match to protein family HMM TIGR00517	gene	gene2250	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2252
AHA_2253	AHA_2253		AHA_2253	2486423	2487664	+	beta-ketoacyl-acyl carrier protein synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801	gene	gene2251	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2253
AHA_2254	AHA_2254		AHA_2254	2487684	2488538	+	aminodeoxychorismate lyase	identified by match to protein family HMM PF01063	gene	gene2252	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2254
AHA_2255	AHA_2255		AHA_2255	2488618	2489529	+	conserved hypothetical protein	identified by match to protein family HMM PF02618%3B match to protein family HMM TIGR00247	gene	gene2253	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2255
AHA_2256	AHA_2256	tmk	tmk	2489529	2490170	+	thymidylate kinase	identified by match to protein family HMM PF02223%3B match to protein family HMM TIGR00041	gene	gene2254	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2256
AHA_2257	AHA_2257	holB	holB	2490155	2491102	+	DNA polymerase III%2C delta' subunit	identified by match to protein family HMM TIGR00678	gene	gene2255	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2257
AHA_2258	AHA_2258		AHA_2258	2491124	2491903	+	putative deoxyribonuclease YcfH	identified by match to protein family HMM PF01026%3B match to protein family HMM TIGR00010	gene	gene2256	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2258
AHA_2259	AHA_2259		AHA_2259	2492203	2493231	+	phage integrase family protein	identified by match to protein family HMM PF00589	gene	gene2257	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2259
AHA_2260	AHA_2260		AHA_2260	2493392	2493694	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2258	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2260
AHA_2261	AHA_2261		AHA_2261	2493410	2493679	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2259	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2261
AHA_2262	AHA_2262		AHA_2262	2493900	2495510	-	Sun/nucleolar protein family protein	identified by match to protein family HMM PF01189%3B match to protein family HMM TIGR00446	gene	gene2260	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2262
AHA_2263	AHA_2263		AHA_2263	2495458	2498010	-	paraquat-inducible protein B	identified by match to protein family HMM PF02470	gene	gene2261	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2263
AHA_2264	AHA_2264		AHA_2264	2498071	2499289	-		PqiA family protein%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF04403	pseudogene	gene2262	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2264
AHA_2265	AHA_2265	prpB	prpB	2499438	2500325	+	methylisocitrate lyase	identified by match to protein family HMM TIGR02317	gene	gene2263	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2265
AHA_2266	AHA_2266		AHA_2266	2500337	2501464	+	2-methylcitrate synthase	identified by match to protein family HMM PF00285%3B match to protein family HMM TIGR01800	gene	gene2264	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2266
AHA_2267	AHA_2267	prpD	prpD	2501594	2503039	+	2-methylcitrate dehydratase	identified by match to protein family HMM PF03972%3B match to protein family HMM TIGR02330	gene	gene2265	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2267
AHA_2268	AHA_2268		AHA_2268	2503124	2503867	-	conserved hypothetical protein		gene	gene2266	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2268
AHA_2269	AHA_2269		AHA_2269	2504067	2504444	+	putative polyhydroxyalkanoic acid system protein	identified by match to protein family HMM TIGR02610	gene	gene2267	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2269
AHA_2270	AHA_2270		AHA_2270	2504725	2506149	+	conserved hypothetical protein	identified by match to protein family HMM PF03007	gene	gene2268	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2270
AHA_2271	AHA_2271		AHA_2271	2506265	2507065	-	putative tetratricopeptide repeat family protein		gene	gene2269	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2271
AHA_2272	AHA_2272		AHA_2272	2507108	2507758	-	transcriptional reguator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene2270	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2272
AHA_2273	AHA_2273		AHA_2273	2507760	2508944	-	phospholipase%2C patatin family	identified by match to protein family HMM PF01734	gene	gene2271	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2273
AHA_2274	AHA_2274		AHA_2274	2509033	2509611	-	PhaF	identified by match to protein family HMM PF05597%3B match to protein family HMM TIGR01837	gene	gene2272	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2274
AHA_2275	AHA_2275		AHA_2275	2509917	2511830	+	AcrA1	identified by match to protein family HMM PF00106%3B match to protein family HMM PF01073%3B match to protein family HMM PF07993	gene	gene2273	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2275
AHA_2276	AHA_2276		AHA_2276	2511880	2512803	-	putative lipase transmembrane protein	identified by match to protein family HMM PF07819	gene	gene2274	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2276
AHA_2277	AHA_2277		AHA_2277	2512950	2513264	+	DNA damage-inducible gene in SOS regulon%2C dependent on cyclic AMP and H-NS	identified by match to protein family HMM PF07130	gene	gene2275	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2277
AHA_2278	AHA_2278		AHA_2278	2513543	2514820	+	site-specific recombinase%2C phage integrase family	identified by match to protein family HMM PF00589	gene	gene2276	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2278
AHA_2279	AHA_2279		AHA_2279	2515032	2517011	+	peptidase%2C S16 (lon protease) family		gene	gene2277	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2279
AHA_2280	AHA_2280	fabA	fabA	2517093	2517653	+	beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabA	identified by match to protein family HMM PF07977%3B match to protein family HMM TIGR01749	gene	gene2278	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2280
AHA_2281	AHA_2281		AHA_2281	2517736	2517912	-	conserved domain protein	identified by match to protein family HMM PF04957	gene	gene2279	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2281
AHA_2282	AHA_2282		AHA_2282	2518076	2519713	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2280	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2282
AHA_2283	AHA_2283	uup	uup	2519722	2521644	-	ABC transporter ATP-binding protein	identified by similarity to SP:P43672%3B match to protein family HMM PF00005	gene	gene2281	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2283
AHA_2284	AHA_2284		AHA_2284	2521719	2521949	-	thiol-disulfide isomerase and thioredoxin	identified by match to protein family HMM PF05768	gene	gene2282	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2284
AHA_2285	AHA_2285		AHA_2285	2521949	2524111	-	methyltransferase	identified by match to protein family HMM PF01170%3B match to protein family HMM PF02926	gene	gene2283	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2285
AHA_2286	AHA_2286		AHA_2286	2524817	2525353	-	conserved hypothetical protein	identified by match to protein family HMM PF07126	gene	gene2284	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2286
AHA_2287	AHA_2287	pyrD	pyrD	2525441	2526451	-	dihydroorotate oxidase	identified by match to protein family HMM PF01180%3B match to protein family HMM TIGR01036	gene	gene2285	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2287
AHA_2288	AHA_2288		AHA_2288	2526528	2531366	-	NAD-glutamate dehydrogenase	identified by match to protein family HMM PF05088	gene	gene2286	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2288
AHA_2289	AHA_2289		AHA_2289	2531645	2531866	-	conserved hypothetical protein		gene	gene2287	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2289
AHA_2290	AHA_2290	pepN	pepN	2531939	2534563	-	aminopeptidase N	identified by similarity to SP:P04825%3B match to protein family HMM PF01433%3B match to protein family HMM TIGR02414	gene	gene2288	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2290
AHA_2291	AHA_2291	prc	prc	2534698	2536713	-	C-terminal processing peptidase	identified by similarity to SP:P23865%3B match to protein family HMM PF00595%3B match to protein family HMM PF03572%3B match to protein family HMM TIGR00225	gene	gene2289	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2291
AHA_2292	AHA_2292	proQ	proQ	2536722	2537360	-	ProP effector	identified by similarity to SP:P45577%3B match to protein family HMM PF04352	gene	gene2290	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2292
AHA_2293	AHA_2293		AHA_2293	2537462	2537920	-	GAF domain protein	identified by match to protein family HMM PF01590	gene	gene2291	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2293
AHA_2294	AHA_2294		AHA_2294	2538031	2538489	-	conserved hypothetical protein		gene	gene2292	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2294
AHA_2295	AHA_2295	ccoN	ccoN	2538707	2540197	+	cytochrome c oxidase%2C Cbb3-type%2C subunit I	identified by match to protein family HMM PF00115%3B match to protein family HMM TIGR00780	gene	gene2293	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2295
AHA_2296	AHA_2296	ccoO	ccoO	2540214	2540828	+	cytochrome c oxidase%2C Cbb3-type%2C subunit II	identified by match to protein family HMM PF02433%3B match to protein family HMM TIGR00781	gene	gene2294	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2296
AHA_2297	AHA_2297	ccoQ	ccoQ	2540841	2541020	+	cytochrome c oxidase%2C cbb3-type%2C CcoQ subunit	identified by similarity to GB:AAM76066.1%3B match to protein family HMM PF05545	gene	gene2295	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2297
AHA_2298	AHA_2298	ccoP	ccoP	2541020	2542009	+	cytochrome c oxidase%2C cbb3-type%2C subunit III	identified by similarity to GB:AAM76067.1%3B match to protein family HMM PF00034%3B match to protein family HMM TIGR00782	gene	gene2296	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2298
AHA_2299	AHA_2299		AHA_2299	2542128	2542616	+	conserved hypothetical protein		gene	gene2297	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2299
AHA_2300	AHA_2300		AHA_2300	2542709	2545108	+	copper-translocating P-type ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525	gene	gene2298	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2300
AHA_2301	AHA_2301	ccoS	ccoS	2545237	2545428	+	cytochrome oxidase maturation protein%2C cbb3-type	identified by match to protein family HMM PF03597%3B match to protein family HMM TIGR00847	gene	gene2299	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2301
AHA_2302	AHA_2302		AHA_2302	2545412	2546098	+	integral membrane protein		gene	gene2300	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2302
AHA_2303	AHA_2303	fnr	fnr	2546167	2546922	+	fumarate and nitrate reduction regulatory protein	identified by similarity to SP:P0A9E5%3B match to protein family HMM PF00027%3B match to protein family HMM PF00325	gene	gene2301	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2303
AHA_2304	AHA_2304		AHA_2304	2547057	2548001	+	universal stress family protein	identified by match to protein family HMM PF00582	gene	gene2302	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2304
AHA_2305	AHA_2305		AHA_2305	2548069	2548977	+	tRNA s2C32 biosynthesis protein TtcA	identified by match to protein family HMM PF01171	gene	gene2303	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2305
AHA_2306	AHA_2306		AHA_2306	2549062	2549739	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2304	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2306
AHA_2307	AHA_2307		AHA_2307	2549811	2550575	-	conserved hypothetical protein		gene	gene2305	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2307
AHA_2308	AHA_2308		AHA_2308	2550817	2551434	+	glutathione S-transferase	identified by match to protein family HMM PF00043%3B match to protein family HMM PF02798	gene	gene2306	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2308
AHA_2309	AHA_2309	rbsD	rbsD	2551640	2552059	+	cytoplasmic D-ribose-binding protein RbsD	identified by match to protein family HMM PF05025	gene	gene2307	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2309
AHA_2310	AHA_2310	rbsA	rbsA	2552093	2553610	+	ribose ABC transporter%2C ATP-binding protein	identified by similarity to SP:P04983%3B match to protein family HMM PF00005	gene	gene2308	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2310
AHA_2311	AHA_2311	rbsC	rbsC	2553607	2554572	+	ribose ABC transporter%2C permease protein	identified by similarity to SP:P04984%3B match to protein family HMM PF02653	gene	gene2309	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2311
AHA_2312	AHA_2312	rbsB	rbsB	2554594	2555469	+	ribose ABC transporter%2C periplasmic ribose-binding protein	identified by similarity to SP:P02925%3B match to protein family HMM PF00532	gene	gene2310	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2312
AHA_2313	AHA_2313	rbsK	rbsK	2555577	2556509	+	ribokinase	identified by match to protein family HMM PF00294%3B match to protein family HMM TIGR02152	gene	gene2311	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2313
AHA_2314	AHA_2314		AHA_2314	2556509	2557513	+	transcriptional regulator%2C lacI family	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene2312	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2314
AHA_2315	AHA_2315		AHA_2315	2557609	2559261	-	GGDEF family protein%2C putative	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2313	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2315
AHA_2316	AHA_2316		AHA_2316	2559258	2559734	-	conserved hypothetical protein		gene	gene2314	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2316
AHA_2317	AHA_2317		AHA_2317	2559824	2560597	-	putative nicotinic acid mononucleotide:5%2C 6-dimethylbenzimidazole(DMB)phosphoribosyltransferase	identified by match to protein family HMM PF02146	gene	gene2315	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2317
AHA_2318	AHA_2318		AHA_2318	2560682	2561281	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2316	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2318
AHA_2319	AHA_2319		AHA_2319	2561285	2562532	-	response regulator receiver domain protein	identified by match to protein family HMM PF00072	gene	gene2317	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2319
AHA_2320	AHA_2320		AHA_2320	2562534	2566457	-	PAS%2C putative	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518	gene	gene2318	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2320
AHA_2321	AHA_2321	ihfA	ihfA	2566548	2566844	-	integration host factor%2C alpha subunit	identified by match to protein family HMM PF00216%3B match to protein family HMM TIGR00987	gene	gene2319	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2321
AHA_2322	AHA_2322	pheT	pheT	2566848	2569244	-	phenylalanyl-tRNA synthetase%2C beta subunit	identified by match to protein family HMM PF01588%3B match to protein family HMM PF03147%3B match to protein family HMM PF03483%3B match to protein family HMM PF03484%3B match to protein family HMM TIGR00472	gene	gene2320	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2322
AHA_2323	AHA_2323	pheS	pheS	2569257	2570240	-	phenylalanyl-tRNA synthetase%2C alpha subunit	identified by match to protein family HMM PF01409%3B match to protein family HMM PF02912%3B match to protein family HMM TIGR00468	gene	gene2321	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2323
AHA_2324	AHA_2324	rplT	rplT	2570557	2570913	-	ribosomal protein L20	identified by match to protein family HMM PF00453%3B match to protein family HMM TIGR01032	gene	gene2322	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2324
AHA_2325	AHA_2325	rpmI	rpmI	2570929	2571126	-	ribosomal protein L35	identified by match to protein family HMM PF01632%3B match to protein family HMM TIGR00001	gene	gene2323	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2325
AHA_2326	AHA_2326	infC	infC	2571213	2571620	-	translation initiation factor IF-3	identified by match to protein family HMM PF00707%3B match to protein family HMM PF05198%3B match to protein family HMM TIGR00168	gene	gene2324	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2326
AHA_2327	AHA_2327	thrS	thrS	2571765	2573693	-	threonyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF02824%3B match to protein family HMM PF03129%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00418	gene	gene2325	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2327
AHA_2328	AHA_2328		AHA_2328	2573930	2574583	-	TPR repeat protein		gene	gene2326	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2328
AHA_2329	AHA_2329		AHA_2329	2574692	2575750	+	radical SAM domain protein	identified by match to protein family HMM PF04055	gene	gene2327	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2329
AHA_2330	AHA_2330	gyrA	gyrA	2576258	2579005	-	DNA gyrase%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01063	gene	gene2328	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2330
AHA_2331	AHA_2331	ubiG	ubiG	2579156	2579923	+	ubiquinone biosynthesis O-methyltransferase	identified by match to protein family HMM PF01209%3B match to protein family HMM PF02353%3B match to protein family HMM TIGR01983	gene	gene2329	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2331
AHA_2332	AHA_2332	gph-1	gph-1	2579923	2580609	+	phosphoglycolate phosphatase%2C bacterial	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene2330	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2332
AHA_2333	AHA_2333	nrdA	nrdA	2581152	2583455	+	ribonucleoside-diphosphate reductase%2C alpha subunit	identified by similarity to SP:P00452%3B match to protein family HMM PF00317%3B match to protein family HMM PF02867%3B match to protein family HMM PF03477%3B match to protein family HMM TIGR02506	gene	gene2331	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2333
AHA_2334	AHA_2334	nrdB	nrdB	2583522	2584655	+	ribonucleoside-diphosphate reductase%2C beta subunit	identified by match to protein family HMM PF00268	gene	gene2332	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2334
AHA_2335	AHA_2335		AHA_2335	2584727	2584972	+	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00111	gene	gene2333	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2335
AHA_2336	AHA_2336	mltA	mltA	2585091	2586242	-	membrane-bound lytic murein transglycosylase A	identified by match to protein family HMM PF03562%3B match to protein family HMM PF06725	gene	gene2334	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2336
AHA_2337	AHA_2337		AHA_2337	2586393	2586644	+	MutT/nudix family protein	identified by match to protein family HMM PF06945	gene	gene2335	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2337
AHA_2338	AHA_2338		AHA_2338	2586669	2587826	-	mannose-6-phosphate isomerase	identified by match to protein family HMM PF07221	gene	gene2336	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2338
AHA_2339	AHA_2339		AHA_2339	2587912	2588760	-	fructose permease IID component	identified by match to protein family HMM PF03613	gene	gene2337	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2339
AHA_2340	AHA_2340		AHA_2340	2588760	2589563	-	PTS system%2C fructose(mannose)-specific IIC	identified by match to protein family HMM PF03609	gene	gene2338	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2340
AHA_2341	AHA_2341		AHA_2341	2589576	2590070	-	pts system mannose-specific eiiab component (eiiab-man)	identified by match to protein family HMM PF03830	gene	gene2339	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2341
AHA_2342	AHA_2342		AHA_2342	2590080	2590511	-	PTS system%2C mannose/fructose/sorbose family%2C IIA component	identified by similarity to GB:AAV43496.1%3B match to protein family HMM PF03610	gene	gene2340	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2342
AHA_2343	AHA_2343		AHA_2343	2590517	2592283	-	hypothetical protein		gene	gene2341	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2343
AHA_2344	AHA_2344	malI-2	malI-2	2592505	2593503	+	maltose regulon regulatory protein MalI	identified by similarity to SP:P18811%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene2342	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2344
AHA_2345	AHA_2345		AHA_2345	2593525	2594094	-	glucose-6-phosphate isomerase	identified by match to protein family HMM PF07883	gene	gene2343	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2345
AHA_2346	AHA_2346	fruA	fruA	2594283	2596007	-	PTS system%2C fructose-specific%2C IIBC component	identified by similarity to SP:P20966%3B match to protein family HMM PF02378%3B match to protein family HMM PF02379%3B match to protein family HMM TIGR00829%3B match to protein family HMM TIGR01427	gene	gene2344	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2346
AHA_2347	AHA_2347		AHA_2347	2596004	2596993	-	1-phosphofructokinase	identified by match to protein family HMM PF00294	gene	gene2345	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2347
AHA_2348	AHA_2348		AHA_2348	2596993	2598093	-	multiphosphoryl transfer protein (MTP) (Phosphotransferase FPrprotein) (Pseudo-HPr)	identified by match to protein family HMM PF00359%3B match to protein family HMM PF00381%3B match to protein family HMM TIGR01003	gene	gene2346	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2348
AHA_2349	AHA_2349	fruR	fruR	2598402	2599385	+	fructose repressor	identified by similarity to SP:P21168%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532%3B match to protein family HMM TIGR02417	gene	gene2347	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2349
AHA_2350	AHA_2350		AHA_2350	2599692	2600885	+	tyrosine-specific transport protein	identified by match to protein family HMM PF01490%3B match to protein family HMM PF03222%3B match to protein family HMM TIGR00837	gene	gene2348	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2350
AHA_2351	AHA_2351		AHA_2351	2601147	2601551	+	conserved hypothetical protein		gene	gene2349	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2351
AHA_2352	AHA_2352		AHA_2352	2601551	2602240	+	conserved hypothetical protein		gene	gene2350	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2352
AHA_2353	AHA_2353		AHA_2353	2602347	2603747	-	putative ATP-dependent RNA helicase RhlE	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2351	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2353
AHA_2354	AHA_2354		AHA_2354	2604071	2604886	+	extracellular solute-binding proteins%2C family 3 protein%2C putative		gene	gene2352	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2354
AHA_2355	AHA_2355	aroC	aroC	2604987	2606075	-	chorismate synthase	identified by match to protein family HMM PF01264%3B match to protein family HMM TIGR00033	gene	gene2353	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2355
AHA_2356	AHA_2356		AHA_2356	2606088	2607023	-	adenine-specific methylase YfcB	identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536	gene	gene2354	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2356
AHA_2357	AHA_2357		AHA_2357	2607089	2607613	+	Smr/MutS family protein	identified by match to protein family HMM PF01713	gene	gene2355	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2357
AHA_2358	AHA_2358		AHA_2358	2607712	2608122	-	conserved hypothetical protein		gene	gene2356	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2358
AHA_2359	AHA_2359		AHA_2359	2608344	2609639	+	sensory box/GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene2357	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2359
AHA_2360	AHA_2360		AHA_2360	2609693	2610322	-	phosphoglycerate mutase	identified by match to protein family HMM PF00300	gene	gene2358	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2360
AHA_2361	AHA_2361		AHA_2361	2610372	2610770	-	conserved hypothetical protein	identified by match to protein family HMM PF04828	gene	gene2359	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2361
AHA_2362	AHA_2362		AHA_2362	2610907	2611287	-	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene2360	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2362
AHA_2363	AHA_2363		AHA_2363	2611743	2613191	-	carbohydrate binding domain protein	identified by match to protein family HMM PF00182%3B match to protein family HMM PF02839	gene	gene2361	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2363
AHA_2364	AHA_2364		AHA_2364	2613508	2614737	-	conserved hypothetical protein		gene	gene2362	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2364
AHA_2365	AHA_2365		AHA_2365	2614888	2615541	+	PhnA protein	identified by match to protein family HMM PF03831	gene	gene2363	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2365
AHA_2366	AHA_2366		AHA_2366	2615783	2615890	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2364	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2366
AHA_2367	AHA_2367		AHA_2367	2616212	2617489	+	conserved hypothetical protein	identified by match to protein family HMM PF07819	gene	gene2365	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2367
AHA_2368	AHA_2368		AHA_2368	2617562	2618449	-	putative phenazine biosynthesis protein PhzF	identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654	gene	gene2366	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2368
AHA_2369	AHA_2369		AHA_2369	2618930	2619760	-	conserved hypothetical protein		gene	gene2367	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2369
AHA_2370	AHA_2370		AHA_2370	2619757	2620266	-	Vco28	identified by match to protein family HMM PF00583	gene	gene2368	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2370
AHA_2371	AHA_2371		AHA_2371	2620319	2620804	-	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene2369	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2371
AHA_2372	AHA_2372		AHA_2372	2620872	2621483	-	ThiJ/pfpI family protein	identified by match to protein family HMM PF01965	gene	gene2370	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2372
AHA_2373	AHA_2373	def-2	def-2	2621548	2622048	-	peptide deformylase	identified by match to protein family HMM PF01327%3B match to protein family HMM TIGR00079	gene	gene2371	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2373
AHA_2374	AHA_2374		AHA_2374	2622075	2622530	-	histone acetyltransferase HPA2	identified by match to protein family HMM PF00583	gene	gene2372	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2374
AHA_2375	AHA_2375		AHA_2375	2622834	2623259	-	antibiotic biosynthesis monooxygenase family protein	identified by match to protein family HMM PF03992	gene	gene2373	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2375
AHA_2376	AHA_2376		AHA_2376	2623289	2623666	-	RplA family protein	identified by match to protein family HMM PF03330%3B match to protein family HMM TIGR00413	gene	gene2374	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2376
AHA_2377	AHA_2377		AHA_2377	2623859	2628286	-	chromosome partition protein MukB		gene	gene2375	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2377
AHA_2378	AHA_2378		AHA_2378	2628314	2629051	-	chromosome partition protein MukE	identified by match to protein family HMM PF04288	gene	gene2376	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2378
AHA_2379	AHA_2379		AHA_2379	2629032	2630351	-	MukF protein	identified by match to protein family HMM PF03882	gene	gene2377	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2379
AHA_2380	AHA_2380		AHA_2380	2630429	2631205	-	SmtA protein		gene	gene2378	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2380
AHA_2381	AHA_2381		AHA_2381	2631496	2632275	+	integral membrane protein	identified by match to protein family HMM PF02698	gene	gene2379	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2381
AHA_2382	AHA_2382	tpiA-1	tpiA-1	2632411	2633166	+	triosephosphate isomerase	identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419	gene	gene2380	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2382
AHA_2383	AHA_2383	pfkA	pfkA	2633314	2634285	+	6-phosphofructokinase	identified by match to protein family HMM PF00365%3B match to protein family HMM TIGR02482	gene	gene2381	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2383
AHA_2384	AHA_2384		AHA_2384	2635487	2636743	+	peptidase%2C M20D family	identified by match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01891	gene	gene2382	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2384
AHA_2385	AHA_2385		AHA_2385	2636825	2637505	-	HAD-superfamily (subfamily IA) hydrolase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02254	gene	gene2383	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2385
AHA_2386	AHA_2386		AHA_2386	2637514	2639010	-	cytosol aminopeptidase	identified by match to protein family HMM PF00883	gene	gene2384	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2386
AHA_2387	AHA_2387		AHA_2387	2639183	2639259	-	tRNA-Met		tRNA	gene2385	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2387
AHA_2388	AHA_2388		AHA_2388	2639357	2639433	-	tRNA-Met		tRNA	gene2386	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2388
AHA_2389	AHA_2389		AHA_2389	2639530	2639606	-	tRNA-Met		tRNA	gene2387	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2389
AHA_2390	AHA_2390		AHA_2390	2639703	2639779	-	tRNA-Met		tRNA	gene2388	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2390
AHA_2391	AHA_2391		AHA_2391	2639876	2639952	-	tRNA-Met		tRNA	gene2389	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2391
AHA_2392	AHA_2392		AHA_2392	2640049	2640125	-	tRNA-Met		tRNA	gene2390	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2392
AHA_2393	AHA_2393		AHA_2393	2640222	2640298	-	tRNA-Met		tRNA	gene2391	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2393
AHA_2394	AHA_2394		AHA_2394	2640391	2640467	-	tRNA-Met		tRNA	gene2392	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2394
AHA_2395	AHA_2395	glgX-1	glgX-1	2640664	2642727	+	glycogen debranching enzyme GlgX	identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100	gene	gene2393	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2395
AHA_2396	AHA_2396		AHA_2396	2642798	2643517	-	conserved hypothetical protein		gene	gene2394	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2396
AHA_2397	AHA_2397		AHA_2397	2643727	2645364	-	homology with RecF protein		gene	gene2395	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2397
AHA_2398	AHA_2398		AHA_2398	2645626	2646513	-	helix-turn-helix%2C AraC type	identified by match to protein family HMM PF00165	gene	gene2396	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2398
AHA_2399	AHA_2399		AHA_2399	2646549	2647592	+	membrane protein	identified by match to protein family HMM PF00892	gene	gene2397	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2399
AHA_2400	AHA_2400		AHA_2400	2647650	2648504	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2398	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2400
AHA_2401	AHA_2401		AHA_2401	2648588	2649367	-	putative membrane protein	identified by match to protein family HMM PF01925	gene	gene2399	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2401
AHA_2402	AHA_2402		AHA_2402	2649575	2650336	-	DTW protein	identified by match to protein family HMM PF03942	gene	gene2400	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2402
AHA_2403	AHA_2403		AHA_2403	2650504	2650917	+	27 kDa antigen Cfp30B	identified by match to protein family HMM PF00903	gene	gene2401	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2403
AHA_2404	AHA_2404		AHA_2404	2650996	2651985	-	D-alanine--D-alanine ligase	identified by match to protein family HMM PF02222%3B match to protein family HMM PF07478%3B match to protein family HMM TIGR01205	gene	gene2402	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2404
AHA_2405	AHA_2405		AHA_2405	2652186	2652881	-	SM-20 domain protein	identified by match to protein family HMM PF03171	gene	gene2403	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2405
AHA_2406	AHA_2406		AHA_2406	2653082	2653558	+	peroxiredoxin HYR1	identified by match to protein family HMM PF00255	gene	gene2404	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2406
AHA_2407	AHA_2407		AHA_2407	2653718	2655103	+	putative ATP-dependent RNA helicase RhlE	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2405	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2407
AHA_2408	AHA_2408		AHA_2408	2655155	2655619	-	probable GMP synthase (glutamine-hydrolyzing)	identified by match to protein family HMM PF00583	gene	gene2406	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2408
AHA_2409	AHA_2409		AHA_2409	2655637	2656128	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2407	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2409
AHA_2410	AHA_2410		AHA_2410	2656162	2656494	-	membrane protein YnfA	identified by match to protein family HMM PF02694	gene	gene2408	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2410
AHA_2411	AHA_2411		AHA_2411	2656667	2657512	-	conserved hypothetical protein		gene	gene2409	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2411
AHA_2412	AHA_2412		AHA_2412	2657869	2658441	+	adenylate cyclase	identified by match to protein family HMM PF01928%3B match to protein family HMM TIGR00318	gene	gene2410	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2412
AHA_2413	AHA_2413		AHA_2413	2658399	2658830	+	nudix family protein%2C MutT subfamily	identified by match to protein family HMM PF00293	gene	gene2411	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2413
AHA_2414	AHA_2414		AHA_2414	2659000	2659506	+	acetyltransferase	identified by match to protein family HMM PF00583	gene	gene2412	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2414
AHA_2415	AHA_2415		AHA_2415	2659567	2660892	+	glycerol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene2413	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2415
AHA_2416	AHA_2416		AHA_2416	2661009	2661314	+	antibiotic biosynthesis monooxygenase family protein	identified by match to protein family HMM PF03992	gene	gene2414	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2416
AHA_2417	AHA_2417	pdxY-2	pdxY-2	2661521	2662384	-	pyridoxal kinase	identified by similarity to SP:P77150%3B match to protein family HMM TIGR00687	gene	gene2415	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2417
AHA_2418	AHA_2418		AHA_2418	2662991	2663746	-	conserved hypothetical protein	identified by similarity to GB:BAA21812.1	gene	gene2416	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2418
AHA_2419	AHA_2419		AHA_2419	2663825	2664388	-	conserved hypothetical protein		gene	gene2417	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2419
AHA_2420	AHA_2420		AHA_2420	2664707	2665057	+	PHA granule-associated protein	identified by match to protein family HMM TIGR02809	gene	gene2418	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2420
AHA_2421	AHA_2421		AHA_2421	2665151	2666935	+	poly-beta-hydroxybutyrate polymerase	identified by match to protein family HMM PF00561%3B match to protein family HMM PF07167%3B match to protein family HMM TIGR01838	gene	gene2419	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2421
AHA_2422	AHA_2422		AHA_2422	2666932	2667336	+	enoyl-CoA hydratase	identified by match to protein family HMM PF01575	gene	gene2420	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2422
AHA_2423	AHA_2423		AHA_2423	2667526	2667759	+	conserved domain protein		gene	gene2421	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2423
AHA_2424	AHA_2424		AHA_2424	2668020	2668556	-	conserved hypothetical protein	identified by similarity to GB:BAC59878.1	gene	gene2422	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2424
AHA_2425	AHA_2425		AHA_2425	2668644	2670395	-	ABC type drug efflux transporter%2C fused ATP binding and permease domains	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2423	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2425
AHA_2426	AHA_2426		AHA_2426	2670392	2670508	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2424	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2426
AHA_2427	AHA_2427		AHA_2427	2670505	2672241	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2425	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2427
AHA_2428	AHA_2428		AHA_2428	2672383	2675184	-	sensory box histidine kinase/response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518	gene	gene2426	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2428
AHA_2429	AHA_2429		AHA_2429	2675339	2675767	+	thioredoxin 2	identified by match to protein family HMM PF00085%3B match to protein family HMM TIGR01068	gene	gene2427	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2429
AHA_2430	AHA_2430		AHA_2430	2675933	2677321	+	transporter%2C divalent anion:Na+ symporter (DASS) family	identified by match to protein family HMM PF00939%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808%3B match to protein family HMM TIGR00785	gene	gene2428	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2430
AHA_2431	AHA_2431		AHA_2431	2677574	2680048	-	maltodextrin phosphorylase	identified by match to protein family HMM PF00343%3B match to protein family HMM TIGR02093	gene	gene2429	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2431
AHA_2432	AHA_2432		AHA_2432	2680434	2680694	-	conserved hypothetical protein		gene	gene2430	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2432
AHA_2433	AHA_2433		AHA_2433	2680877	2681353	+	putative cell division inhibitor		gene	gene2431	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2433
AHA_2434	AHA_2434		AHA_2434	2681773	2683569	-	fumarate hydratase%2C class I	identified by match to protein family HMM PF05681%3B match to protein family HMM PF05683%3B match to protein family HMM TIGR00722%3B match to protein family HMM TIGR00723	gene	gene2432	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2434
AHA_2435	AHA_2435	pabB	pabB	2683506	2684879	+	para-aminobenzoate synthase%2C component I	identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00553	gene	gene2433	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2435
AHA_2436	AHA_2436		AHA_2436	2684927	2685493	+	MutT/nudix family protein	identified by match to protein family HMM PF00293	gene	gene2434	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2436
AHA_2437	AHA_2437		AHA_2437	2685709	2687007	+	serine transporter family protein	identified by similarity to SP:P0AAD6%3B match to protein family HMM PF01490%3B match to protein family HMM PF03222	gene	gene2435	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2437
AHA_2438	AHA_2438		AHA_2438	2687428	2688678	-	transporter%2C dicarboxylate/amino acid:cation (Na+ or H+) symporter (DAACS) family	identified by match to protein family HMM PF00375	gene	gene2436	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2438
AHA_2439	AHA_2439		AHA_2439	2689016	2690944	+	DNA helicase	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM TIGR00614	gene	gene2437	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2439
AHA_2440	AHA_2440		AHA_2440	2691510	2693432	+	PrkA serine kinase	identified by match to protein family HMM PF06798	gene	gene2438	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2440
AHA_2441	AHA_2441		AHA_2441	2693456	2694727	+	conserved hypothetical protein	identified by match to protein family HMM PF04285	gene	gene2439	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2441
AHA_2442	AHA_2442		AHA_2442	2694738	2696255	+	stage V sporulation protein R	identified by match to protein family HMM PF04293	gene	gene2440	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2442
AHA_2443	AHA_2443		AHA_2443	2696320	2697033	-	fatty acid metabolism transcriptional regulator FadR	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07840%3B match to protein family HMM TIGR02812	gene	gene2441	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2443
AHA_2444	AHA_2444	nhaB	nhaB	2697368	2698948	+	Na+/H+ antiporter NhaB	identified by similarity to SP:P27377%3B match to protein family HMM PF03600%3B match to protein family HMM PF06450%3B match to protein family HMM TIGR00774	gene	gene2442	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2444
AHA_2445	AHA_2445	dsbB	dsbB	2699034	2699555	+	disulfide bond formation protein DsbB	identified by similarity to SP:P0A6M2%3B match to protein family HMM PF02600	gene	gene2443	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2445
AHA_2446	AHA_2446		AHA_2446	2699642	2700295	-	DedA protein		gene	gene2444	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2446
AHA_2447	AHA_2447		AHA_2447	2700453	2700722	-	putative membrane protein	identified by match to protein family HMM PF06803	gene	gene2445	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2447
AHA_2448	AHA_2448	uvrB	uvrB	2700719	2702731	-	excinuclease ABC%2C B subunit	identified by match to protein family HMM PF00271%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00631	gene	gene2446	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2448
AHA_2449	AHA_2449		AHA_2449	2702867	2702942	+	tRNA-Asn		tRNA	gene2447	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2449
AHA_2450	AHA_2450		AHA_2450	2703718	2705403	+	integral membrane protein with TrkA domains	identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625	gene	gene2448	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2450
AHA_2451	AHA_2451		AHA_2451	2705621	2707153	+	lytic transglycosylase%2C catalytic	identified by match to protein family HMM PF01464	gene	gene2449	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2451
AHA_2452	AHA_2452		AHA_2452	2707384	2708349	+	bordetella uptake gene family protein	identified by match to protein family HMM PF03401	gene	gene2450	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2452
AHA_2453	AHA_2453		AHA_2453	2708392	2708853	+	conserved hypothetical protein		gene	gene2451	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2453
AHA_2454	AHA_2454		AHA_2454	2708863	2710395	+	TctA protein	identified by match to protein family HMM PF01970	gene	gene2452	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2454
AHA_2455	AHA_2455		AHA_2455	2710474	2711139	-	transcriptional regulatory protein CitT	identified by match to protein family HMM PF00072	gene	gene2453	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2455
AHA_2456	AHA_2456	dpiB	dpiB	2711140	2712723	-	sensor histidine kinase DpiB	identified by similarity to SP:P77510%3B match to protein family HMM PF02518	gene	gene2454	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2456
AHA_2457	AHA_2457		AHA_2457	2712720	2713955	-	Mlc protein	identified by match to protein family HMM PF00480	gene	gene2455	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2457
AHA_2458	AHA_2458		AHA_2458	2714063	2715730	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2456	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2458
AHA_2459	AHA_2459		AHA_2459	2715742	2716317	+	SEC-C motif domain protein	identified by match to protein family HMM PF02810	gene	gene2457	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2459
AHA_2460	AHA_2460		AHA_2460	2716511	2718190	+	anaerobic glycerol-3-phosphate dehydrogenase subunit A	identified by match to protein family HMM PF01266%3B match to protein family HMM PF04324	gene	gene2458	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2460
AHA_2461	AHA_2461		AHA_2461	2718180	2719460	+	anaerobic glycerol-3-phosphate dehydrogenase subunit B	identified by match to protein family HMM PF00890%3B match to protein family HMM PF01266	gene	gene2459	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2461
AHA_2462	AHA_2462	glpC	glpC	2719512	2720714	+	anaerobic glycerol-3-phosphate dehydrogenase subunit C	identified by match to protein family HMM PF00037%3B match to protein family HMM PF02754	gene	gene2460	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2462
AHA_2463	AHA_2463		AHA_2463	2720802	2731490	-	type I secretion target ggxgxdxxx repeat (2 copies) domain protein	identified by match to protein family HMM PF00353%3B match to protein family HMM TIGR01965	gene	gene2461	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2463
AHA_2464	AHA_2464	nrfA	nrfA	2732209	2733654	+	nitrite reductase (cytochrome%3B ammonia-forming)	identified by match to protein family HMM PF02335	gene	gene2462	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2464
AHA_2465	AHA_2465		AHA_2465	2733706	2734320	+	cytochrome c-type protein NrfB		gene	gene2463	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2465
AHA_2466	AHA_2466		AHA_2466	2734317	2735009	+	4Fe-4S binding domain protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01409	gene	gene2464	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2466
AHA_2467	AHA_2467		AHA_2467	2735006	2735962	+	protein NrfD	identified by match to protein family HMM PF03916	gene	gene2465	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2467
AHA_2468	AHA_2468	ccmF-2	ccmF-2	2736112	2738073	+	cytochrome c-type biogenesis protein CcmF	identified by match to protein family HMM PF01578%3B match to protein family HMM TIGR00353	gene	gene2466	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2468
AHA_2469	AHA_2469		AHA_2469	2738070	2738669	+	thiol:disulfide interchange protein DsbE	identified by match to protein family HMM TIGR00385	gene	gene2467	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2469
AHA_2470	AHA_2470		AHA_2470	2738666	2739856	+	formate-dependent nitrite reductase complex NrfF subunit	identified by match to protein family HMM PF03918	gene	gene2468	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2470
AHA_2471	AHA_2471		AHA_2471	2739994	2740449	+	MutT/nudix family protein	identified by match to protein family HMM PF00293	gene	gene2469	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2471
AHA_2472	AHA_2472		AHA_2472	2740852	2741772	+	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF00768	gene	gene2470	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2472
AHA_2473	AHA_2473		AHA_2473	2741866	2743416	-	dimodular nonribosomal peptide synthetase	identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR01733	gene	gene2471	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2473
AHA_2474	AHA_2474		AHA_2474	2743413	2749607	-	nonribosomal peptide synthetase	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01720%3B match to protein family HMM TIGR01733	gene	gene2472	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2474
AHA_2475	AHA_2475		AHA_2475	2749724	2750473	-	2%2C3-dihydro-2%2C3-dihydroxybenzoate dehydrogenase	identified by match to protein family HMM PF00106	gene	gene2473	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2475
AHA_2476	AHA_2476		AHA_2476	2750503	2753604	-	nonribosomal peptide synthetase	identified by match to protein family HMM PF00501%3B match to protein family HMM PF00550%3B match to protein family HMM PF00668%3B match to protein family HMM TIGR01733	gene	gene2474	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2476
AHA_2477	AHA_2477		AHA_2477	2753601	2754524	-	isochorismatase	identified by similarity to SP:P15048%3B match to protein family HMM PF00550%3B match to protein family HMM PF00857	gene	gene2475	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2477
AHA_2478	AHA_2478		AHA_2478	2754548	2756209	-	2%2C3-dihydroxybenzoate-AMP ligase	identified by similarity to SP:P10378%3B match to protein family HMM PF00501%3B match to protein family HMM TIGR02275	gene	gene2476	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2478
AHA_2479	AHA_2479		AHA_2479	2756286	2757479	-	isochorismate synthases	identified by similarity to SP:P10377%3B match to protein family HMM PF00425%3B match to protein family HMM TIGR00543	gene	gene2477	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2479
AHA_2480	AHA_2480		AHA_2480	2757805	2758356	+	putative lipoprotein	identified by match to protein family HMM PF07273	gene	gene2478	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2480
AHA_2481	AHA_2481		AHA_2481	2758502	2760502	+	conserved hypothetical protein	identified by similarity to GB:CAG22906.1	gene	gene2479	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2481
AHA_2482	AHA_2482	glgC-1	glgC-1	2760580	2761854	-	glucose-1-phosphate adenylyltransferase	identified by similarity to SP:P05415%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR02091	gene	gene2480	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2482
AHA_2483	AHA_2483		AHA_2483	2763646	2764140	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2482	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2483
AHA_2484	AHA_2484		AHA_2484	2762043	2763683	+	GGDEF/eal domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990	gene	gene2481	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2484
AHA_2485	AHA_2485		AHA_2485	2764309	2764671	-	conserved hypothetical protein	identified by similarity to GB:BAC94307.1	gene	gene2483	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2485
AHA_2486	AHA_2486		AHA_2486	2764858	2766162	-	inosine-guanosine kinase	identified by match to protein family HMM PF00294	gene	gene2484	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2486
AHA_2487	AHA_2487		AHA_2487	2766342	2766734	-	conserved hypothetical protein		gene	gene2485	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2487
AHA_2488	AHA_2488	hemH	hemH	2766807	2767832	-	ferrochelatase	identified by similarity to SP:P23871%3B match to protein family HMM PF00762%3B match to protein family HMM TIGR00109	gene	gene2486	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2488
AHA_2489	AHA_2489		AHA_2489	2767896	2768540	-	adenylate kinase	identified by match to protein family HMM PF00406%3B match to protein family HMM PF05191%3B match to protein family HMM TIGR01351	gene	gene2487	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2489
AHA_2490	AHA_2490	htpG	htpG	2768795	2770720	-	chaperone protein HtpG	identified by similarity to SP:P0A6Z3%3B match to protein family HMM PF00183%3B match to protein family HMM PF02518	gene	gene2488	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2490
AHA_2491	AHA_2491	recR	recR	2770954	2771556	-	recombination protein RecR	identified by match to protein family HMM PF01751%3B match to protein family HMM PF02132%3B match to protein family HMM TIGR00615	gene	gene2489	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2491
AHA_2492	AHA_2492	fdhD-2	fdhD-2	2771682	2772539	-	formate dehydrogenase family accessory protein FdhD	identified by match to protein family HMM PF02634%3B match to protein family HMM TIGR00129	gene	gene2490	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2492
AHA_2493	AHA_2493		AHA_2493	2772551	2774680	-	formate hydrogenlyase transcriptional activator	identified by match to protein family HMM PF00158%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954	gene	gene2491	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2493
AHA_2494	AHA_2494		AHA_2494	2775035	2775433	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2492	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2494
AHA_2495	AHA_2495	fdhA	fdhA	2775515	2777659	-	formate dehydrogenase%2C alpha subunit%2C selenocysteine-containing	Selenoprotein. identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01591	gene	gene2493	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2495
AHA_2496	AHA_2496		AHA_2496	2777706	2778305	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene2494	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2496
AHA_2497	AHA_2497		AHA_2497	2779070	2780818	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2495	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2497
AHA_2498	AHA_2498	kup	kup	2781291	2783159	+	potassium uptake protein	identified by match to protein family HMM PF02705%3B match to protein family HMM TIGR00794	gene	gene2496	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2498
AHA_2499	AHA_2499	hyfA	hyfA	2783748	2784413	+	hydrogenase-4 component A	identified by match to protein family HMM PF00037	gene	gene2497	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2499
AHA_2500	AHA_2500		AHA_2500	2784413	2786284	+	hydrogenase-4 component B	identified by match to protein family HMM PF00361	gene	gene2498	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2500
AHA_2501	AHA_2501		AHA_2501	2786286	2787239	+	hydrogenase-4 component C	identified by match to protein family HMM PF00146	gene	gene2499	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2501
AHA_2502	AHA_2502		AHA_2502	2787320	2789038	+	hydrogenase-4 component G	identified by match to protein family HMM PF00329%3B match to protein family HMM PF00346	gene	gene2500	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2502
AHA_2503	AHA_2503		AHA_2503	2789048	2789605	+	hydrogenase-4 component H	identified by match to protein family HMM PF00037	gene	gene2501	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2503
AHA_2504	AHA_2504		AHA_2504	2789605	2790420	+	hydrogenase-4 component I	identified by match to protein family HMM PF01058	gene	gene2502	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2504
AHA_2505	AHA_2505		AHA_2505	2790413	2790826	+	formate hydrogenlyase maturation protein HycH		gene	gene2503	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2505
AHA_2506	AHA_2506		AHA_2506	2790826	2791335	+	hydrogenase maturation protease HycI	identified by match to protein family HMM PF01750%3B match to protein family HMM TIGR00072%3B match to protein family HMM TIGR00142	gene	gene2504	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2506
AHA_2507	AHA_2507		AHA_2507	2791529	2791616	+	tRNA-Sec		tRNA	gene2505	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2507
AHA_2508	AHA_2508	selA	selA	2791890	2793326	+	L-seryl-tRNA selenium transferase	identified by match to protein family HMM PF03841%3B match to protein family HMM TIGR00474	gene	gene2506	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2508
AHA_2509	AHA_2509	selB	selB	2793331	2795214	+	selenocysteine-specific translation elongation factor	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00475	gene	gene2507	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2509
AHA_2510	AHA_2510	hypF	hypF	2795211	2797649	+	[NiFe] hydrogenase maturation protein HypF	identified by match to protein family HMM PF00708%3B match to protein family HMM PF01300%3B match to protein family HMM PF07503%3B match to protein family HMM TIGR00143	gene	gene2508	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2510
AHA_2511	AHA_2511	hypC	hypC	2797655	2797906	+	hydrogenase assembly chaperone HypC/HupF	identified by match to protein family HMM PF01455%3B match to protein family HMM TIGR00074	gene	gene2509	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2511
AHA_2512	AHA_2512	hypD	hypD	2797900	2799018	+	hydrogenase expression/formation protein HypD	identified by match to protein family HMM PF01924%3B match to protein family HMM TIGR00075	gene	gene2510	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2512
AHA_2513	AHA_2513	hypE	hypE	2799015	2800019	+	hydrogenase expression/formation protein HypE	identified by similarity to SP:P40595%3B match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR02124	gene	gene2511	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2513
AHA_2514	AHA_2514	hypA	hypA	2800089	2800430	+	hydrogenase nickel insertion protein HypA	identified by match to protein family HMM PF01155%3B match to protein family HMM TIGR00100	gene	gene2512	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2514
AHA_2515	AHA_2515		AHA_2515	2800432	2801523	+	hydrogenase nickel incorporation protein HypB	identified by match to protein family HMM PF02492%3B match to protein family HMM TIGR00073	gene	gene2513	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2515
AHA_2516	AHA_2516		AHA_2516	2801859	2802500	-	ATPase protein DppE	identified by match to protein family HMM PF00005	gene	gene2514	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2516
AHA_2517	AHA_2517		AHA_2517	2802500	2803288	-	ABC nickel/di-oligopepetide transporter%2C ATP binding subunit	identified by match to protein family HMM PF00005	gene	gene2515	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2517
AHA_2518	AHA_2518		AHA_2518	2803392	2804204	-	ABC nickel/di-oligopepetide transporter%2C permease subunit	identified by match to protein family HMM PF00528	gene	gene2516	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2518
AHA_2519	AHA_2519		AHA_2519	2804194	2805198	-	ABC nickel/di-oligopepetide transporter%2C permease subunit	identified by match to protein family HMM PF00528	gene	gene2517	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2519
AHA_2520	AHA_2520		AHA_2520	2805183	2806814	-	ABC transporter%2C periplasmic nickel/di-oligopepetide binding protein	identified by match to protein family HMM PF00496	gene	gene2518	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2520
AHA_2521	AHA_2521		AHA_2521	2806922	2807470	-	hydrogenase-2 operon protein HybE		gene	gene2519	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2521
AHA_2522	AHA_2522	hybD	hybD	2807452	2807982	-	hydrogenase expression/formation protein	identified by match to protein family HMM PF01750%3B match to protein family HMM TIGR00072%3B match to protein family HMM TIGR00140%3B match to protein family HMM TIGR00141	gene	gene2520	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2522
AHA_2523	AHA_2523	hybC	hybC	2807982	2809685	-	hydrogenase-2 large chain	identified by similarity to SP:P37181%3B match to protein family HMM PF00374	gene	gene2521	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2523
AHA_2524	AHA_2524		AHA_2524	2809682	2810869	-	probable Ni/Fe-hydrogenase 2 b-type cytochrome subunit	identified by match to protein family HMM PF03916	gene	gene2522	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2524
AHA_2525	AHA_2525		AHA_2525	2810862	2811887	-	hydrogenase-2 operon protein HybA	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01409	gene	gene2523	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2525
AHA_2526	AHA_2526		AHA_2526	2811890	2813023	-	hydrogenase (NiFe) small subunit (hydA)	identified by similarity to SP:P18637%3B match to protein family HMM PF01058%3B match to protein family HMM TIGR00391%3B match to protein family HMM TIGR01409	gene	gene2524	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2526
AHA_2527	AHA_2527		AHA_2527	2813759	2814127	+	CheY	identified by match to protein family HMM PF00072	gene	gene2525	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2527
AHA_2528	AHA_2528		AHA_2528	2814124	2814444	+	anti-anti-sigma factor family protein	identified by match to protein family HMM PF01740	gene	gene2526	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2528
AHA_2529	AHA_2529		AHA_2529	2814431	2816587	+	putative chemotaxis protein	identified by match to protein family HMM PF01584%3B match to protein family HMM PF01627%3B match to protein family HMM PF02518%3B match to protein family HMM PF02895	gene	gene2527	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2529
AHA_2530	AHA_2530		AHA_2530	2816631	2818307	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2528	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2530
AHA_2531	AHA_2531	cheW-3	cheW-3	2818317	2818844	+	chemotaxis protein CheW	identified by similarity to GB:AAB53941.1%3B match to protein family HMM PF01584	gene	gene2529	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2531
AHA_2532	AHA_2532	cheR-2	cheR-2	2818847	2819710	+	CheR methyltransferase%2C SAM binding domain protein	identified by similarity to SP:P07364%3B match to protein family HMM PF01739%3B match to protein family HMM PF03705	gene	gene2530	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2532
AHA_2533	AHA_2533	cheB-3	cheB-3	2819707	2820783	+	chemotaxis response regulator protein-glutamate methylesterase	identified by similarity to SP:P04042%3B match to protein family HMM PF00072%3B match to protein family HMM PF01339	gene	gene2531	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2533
AHA_2534	AHA_2534		AHA_2534	2820786	2821994	+	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00563	gene	gene2532	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2534
AHA_2535	AHA_2535		AHA_2535	2822106	2823737	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2533	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2535
AHA_2536	AHA_2536	alr-2	alr-2	2824216	2825325	+	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene2534	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2536
AHA_2537	AHA_2537		AHA_2537	2825475	2826170	-	conserved protein	identified by match to protein family HMM PF03483	gene	gene2535	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2537
AHA_2538	AHA_2538		AHA_2538	2826214	2826816	+	transcriptional regulator%2C Cro/CI family	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene2536	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2538
AHA_2539	AHA_2539		AHA_2539	2826979	2827066	-	tRNA-Ser		tRNA	gene2537	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2539
AHA_2540	AHA_2540		AHA_2540	2827250	2829091	-	putative sulfate transporter YchM	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916%3B match to protein family HMM PF01740%3B match to protein family HMM TIGR00815	gene	gene2538	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2540
AHA_2541	AHA_2541		AHA_2541	2829543	2829618	+	tRNA-Asn		tRNA	gene2539	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2541
AHA_2542	AHA_2542		AHA_2542	2829621	2829696	+	tRNA-Asn		tRNA	gene2540	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2542
AHA_2543	AHA_2543		AHA_2543	2829840	2830325	+	conserved hypothetical protein	identified by match to protein family HMM PF03350	gene	gene2541	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2543
AHA_2544	AHA_2544		AHA_2544	2830443	2830892	+	conserved hypothetical protein		gene	gene2542	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2544
AHA_2545	AHA_2545		AHA_2545	2830975	2833866	+	conserved hypothetical protein		gene	gene2543	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2545
AHA_2546	AHA_2546		AHA_2546	2833866	2834684	+	hypothetical membrane protein	identified by match to protein family HMM PF03239	gene	gene2544	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2546
AHA_2547	AHA_2547		AHA_2547	2834709	2836205	+	amine oxidase%2C flavin-containing superfamily	identified by match to protein family HMM PF01593	gene	gene2545	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2547
AHA_2548	AHA_2548		AHA_2548	2836353	2836913	+	conserved hypothetical protein		gene	gene2546	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2548
AHA_2549	AHA_2549		AHA_2549	2837093	2838376	+	conserved hypothetical protein		gene	gene2547	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2549
AHA_2550	AHA_2550		AHA_2550	2838428	2839618	+	bicyclomycin resistance protein	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00710	gene	gene2548	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2550
AHA_2551	AHA_2551		AHA_2551	2839716	2840183	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2549	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2551
AHA_2552	AHA_2552		AHA_2552	2840204	2841016	+	lipoprotein-releasing system ATP-binding protein LolD	identified by match to protein family HMM PF00005	gene	gene2550	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2552
AHA_2553	AHA_2553		AHA_2553	2841062	2843461	+	probable adhesion component transport transmembrane protein abc transporter%2C putative	identified by match to protein family HMM PF02687	gene	gene2551	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2553
AHA_2554	AHA_2554		AHA_2554	2843458	2844642	+	conserved hypothetical protein		gene	gene2552	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2554
AHA_2555	AHA_2555		AHA_2555	2844744	2845688	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2553	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2555
AHA_2556	AHA_2556		AHA_2556	2846931	2849723	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01565%3B match to protein family HMM PF02913	gene	gene2554	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2556
AHA_2557	AHA_2557		AHA_2557	2849723	2850367	-	conserved hypothetical protein	identified by match to protein family HMM PF02589	gene	gene2555	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2557
AHA_2558	AHA_2558		AHA_2558	2850369	2851805	-	iron-sulfur cluster binding protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00273	gene	gene2556	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2558
AHA_2559	AHA_2559		AHA_2559	2851798	2852589	-	Fe-S oxidoreductase	identified by match to protein family HMM PF02754	gene	gene2557	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2559
AHA_2560	AHA_2560		AHA_2560	2852603	2854300	-	transporter%2C lactate permease (LctP) family	identified by similarity to SP:P33231%3B match to protein family HMM PF02652	gene	gene2558	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2560
AHA_2561	AHA_2561		AHA_2561	2854361	2855338	+	transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene2559	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2561
AHA_2562	AHA_2562		AHA_2562	2855405	2855719	+	arylsulfate sulfotransferase		gene	gene2560	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2562
AHA_2563	AHA_2563		AHA_2563	2855796	2856191	-	lactoylglutathione lyase	identified by match to protein family HMM PF00903	gene	gene2561	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2563
AHA_2564	AHA_2564		AHA_2564	2856345	2857127	-	dihydrolipoyllysine-residue acetyltransferase component of acetoincleaving system	identified by match to protein family HMM PF00561	gene	gene2562	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2564
AHA_2565	AHA_2565		AHA_2565	2857234	2857590	+	conserved hypothetical protein	identified by similarity to GB:CAB66213.1%3B match to protein family HMM PF04237	gene	gene2563	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2565
AHA_2566	AHA_2566		AHA_2566	2857587	2858075	+	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2564	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2566
AHA_2567	AHA_2567		AHA_2567	2858109	2858465	+	conserved hypothetical protein		gene	gene2565	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2567
AHA_2568	AHA_2568	msrA	msrA	2858806	2859438	-	methionine-S-sulfoxide reductase	identified by match to protein family HMM PF01625%3B match to protein family HMM TIGR00401	gene	gene2566	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2568
AHA_2569	AHA_2569	argA	argA	2859698	2861026	+	amino-acid N-acetyltransferase	identified by match to protein family HMM PF00583%3B match to protein family HMM PF00696%3B match to protein family HMM TIGR01890	gene	gene2567	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2569
AHA_2570	AHA_2570		AHA_2570	2861448	2862800	+	asparate kinase%2C monofunctional class	identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00656%3B match to protein family HMM TIGR00657	gene	gene2568	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2570
AHA_2571	AHA_2571		AHA_2571	2862895	2863983	-	conserved hypothetical protein		gene	gene2569	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2571
AHA_2572	AHA_2572		AHA_2572	2864238	2866499	+	sulfatase	identified by match to protein family HMM PF00884	gene	gene2570	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2572
AHA_2573	AHA_2573		AHA_2573	2866589	2867602	-	microcin immunity protein	identified by match to protein family HMM PF02016	gene	gene2571	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2573
AHA_2574	AHA_2574		AHA_2574	2867868	2868710	+	alpha-beta superfamily hydrolase	identified by match to protein family HMM PF01734	gene	gene2572	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2574
AHA_2575	AHA_2575		AHA_2575	2868909	2869967	+	anaerobic sulfite reductase subunit A	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02910	gene	gene2573	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2575
AHA_2576	AHA_2576		AHA_2576	2869969	2870808	+	anaerobic sulfite reductase subunit B	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00970%3B match to protein family HMM TIGR02911	gene	gene2574	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2576
AHA_2577	AHA_2577		AHA_2577	2870820	2871830	+	anaerobic sulfite reductase subunit C	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02912	gene	gene2575	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2577
AHA_2578	AHA_2578		AHA_2578	2872003	2873394	+	siroheme synthase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470	gene	gene2576	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2578
AHA_2579	AHA_2579		AHA_2579	2873483	2874085	-	putative lipoprotein		gene	gene2577	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2579
AHA_2580	AHA_2580		AHA_2580	2874358	2874675	-	conserved hypothetical protein	identified by match to protein family HMM PF01906	gene	gene2578	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2580
AHA_2581	AHA_2581		AHA_2581	2874944	2876233	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2579	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2581
AHA_2582	AHA_2582		AHA_2582	2876258	2877337	+	conserved hypothetical protein		gene	gene2580	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2582
AHA_2583	AHA_2583		AHA_2583	2877383	2878183	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2581	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2583
AHA_2584	AHA_2584		AHA_2584	2878289	2879581	-	NADH dehydrogenase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992	gene	gene2582	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2584
AHA_2585	AHA_2585		AHA_2585	2879660	2880295	-	conserved hypothetical protein	identified by match to protein family HMM PF05728	gene	gene2583	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2585
AHA_2586	AHA_2586		AHA_2586	2880669	2882084	+	putative xanthine permease	identified by similarity to SP:P42086%3B match to protein family HMM PF00860%3B match to protein family HMM TIGR00801	gene	gene2584	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2586
AHA_2587	AHA_2587		AHA_2587	2882137	2883945	-	oligoendopeptidase F	identified by match to protein family HMM PF01432	gene	gene2585	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2587
AHA_2588	AHA_2588		AHA_2588	2884039	2885817	-	oligoendopeptidase F	identified by match to protein family HMM PF01432	gene	gene2586	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2588
AHA_2589	AHA_2589		AHA_2589	2885999	2886916	-	inner membrane protein YedI	identified by match to protein family HMM PF05661	gene	gene2587	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2589
AHA_2590	AHA_2590		AHA_2590	2887175	2887777	+	conserved hypothetical protein	identified by match to protein family HMM PF06041	gene	gene2588	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2590
AHA_2591	AHA_2591	secF-2	secF-2	2887842	2888849	-	protein-export membrane protein SecF	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR00966	gene	gene2589	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2591
AHA_2592	AHA_2592	secD-2	secD-2	2888869	2890722	-	protein-export membrane protein SecD	identified by match to protein family HMM PF02355%3B match to protein family HMM PF07549%3B match to protein family HMM TIGR00916%3B match to protein family HMM TIGR01129	gene	gene2590	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2592
AHA_2593	AHA_2593		AHA_2593	2890819	2891325	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2591	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2593
AHA_2594	AHA_2594		AHA_2594	2891392	2892249	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2592	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2594
AHA_2595	AHA_2595		AHA_2595	2892311	2892982	-	conserved hypothetical protein		gene	gene2593	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2595
AHA_2596	AHA_2596		AHA_2596	2893155	2893751	-	conserved hypothetical protein	identified by match to protein family HMM TIGR02722	gene	gene2594	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2596
AHA_2597	AHA_2597		AHA_2597	2893751	2894149	-	conserved hypothetical protein	identified by match to protein family HMM PF07233	gene	gene2595	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2597
AHA_2598	AHA_2598		AHA_2598	2894218	2895564	-	TPR domain protein		gene	gene2596	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2598
AHA_2599	AHA_2599		AHA_2599	2895639	2895989	-	HIT family hydrolase	identified by match to protein family HMM PF01230	gene	gene2597	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2599
AHA_2600	AHA_2600		AHA_2600	2896087	2898252	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2598	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2600
AHA_2601	AHA_2601		AHA_2601	2898328	2899146	-	conserved hypothetical protein		gene	gene2599	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2601
AHA_2602	AHA_2602		AHA_2602	2899292	2900635	+	dihydroorotase	identified by match to protein family HMM PF01979%3B match to protein family HMM TIGR00857	gene	gene2600	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2602
AHA_2603	AHA_2603		AHA_2603	2900868	2900944	+	tRNA-Pro		tRNA	gene2601	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2603
AHA_2604	AHA_2604		AHA_2604	2901009	2901560	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2602	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2604
AHA_2605	AHA_2605		AHA_2605	2901652	2903025	+	proton/sodium-glutamate symport protein	identified by match to protein family HMM PF00375	gene	gene2603	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2605
AHA_2606	AHA_2606		AHA_2606	2903101	2903556	-	conserved hypothetical protein	identified by similarity to GB:AAY91672.1	gene	gene2604	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2606
AHA_2607	AHA_2607	alr-3	alr-3	2903747	2904973	+	alanine racemase	identified by match to protein family HMM PF00842%3B match to protein family HMM PF01168%3B match to protein family HMM TIGR00492	gene	gene2605	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2607
AHA_2608	AHA_2608		AHA_2608	2905030	2905974	-	Alx protein	identified by match to protein family HMM PF03741	gene	gene2606	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2608
AHA_2609	AHA_2609		AHA_2609	2906268	2907263	-	oligopeptide ABC transporter%2C ATP-binding protein OppF	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene2607	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2609
AHA_2610	AHA_2610		AHA_2610	2907264	2908244	-	oligopeptide ABC transporter%2C ATP-binding protein OppD	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene2608	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2610
AHA_2611	AHA_2611		AHA_2611	2908345	2909256	-	oligopeptide ABC transporter%2C permease protein OppC	identified by match to protein family HMM PF00528	gene	gene2609	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2611
AHA_2612	AHA_2612		AHA_2612	2909271	2910191	-	oligopeptide ABC transporter%2C permease protein OppB	identified by match to protein family HMM PF00528	gene	gene2610	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2612
AHA_2613	AHA_2613		AHA_2613	2910289	2911908	-	oligopeptide ABC transporter%2C periplasmic oligopeptide-binding protein	identified by match to protein family HMM PF00496	gene	gene2611	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2613
AHA_2614	AHA_2614		AHA_2614	2912188	2912862	-	conserved hypothetical protein	identified by match to protein family HMM PF01914%3B match to protein family HMM TIGR00427	gene	gene2612	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2614
AHA_2615	AHA_2615		AHA_2615	2912997	2913725	+	conserved hypothetical protein	identified by similarity to GB:BAB74783.1	gene	gene2613	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2615
AHA_2616	AHA_2616		AHA_2616	2914021	2916696	+	aldehyde-alcohol dehydrogenase	identified by match to protein family HMM PF00171%3B match to protein family HMM PF00465	gene	gene2614	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2616
AHA_2617	AHA_2617		AHA_2617	2916806	2918041	+	HD domain protein	identified by match to protein family HMM PF01966%3B match to protein family HMM TIGR00277	gene	gene2615	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2617
AHA_2618	AHA_2618		AHA_2618	2918395	2920065	+	sensor histidine kinase	identified by match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694	gene	gene2616	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2618
AHA_2619	AHA_2619		AHA_2619	2920123	2920827	+	hypothetical response regulatory protein YehT	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene2617	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2619
AHA_2620	AHA_2620		AHA_2620	2920968	2922389	+	CstA protein	identified by match to protein family HMM PF02554	gene	gene2618	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2620
AHA_2621	AHA_2621		AHA_2621	2922679	2923017	+	inner membrane protein YiaW		gene	gene2619	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2621
AHA_2622	AHA_2622		AHA_2622	2923021	2924058	+	secretion protein%2C HlyD family	identified by match to protein family HMM PF00529	gene	gene2620	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2622
AHA_2623	AHA_2623		AHA_2623	2924173	2925933	+	putative helicase%2C ATP-dependent	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851	gene	gene2621	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2623
AHA_2624	AHA_2624	dacB	dacB	2926065	2927501	+	D-alanyl-D-alanine carboxypeptidase/D-alanyl-D-alanine-endopeptidase	identified by match to protein family HMM PF02113%3B match to protein family HMM TIGR00666	gene	gene2622	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2624
AHA_2625	AHA_2625	grxA	grxA	2927644	2927907	+	glutaredoxin	identified by match to protein family HMM PF00462%3B match to protein family HMM TIGR02183	gene	gene2623	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2625
AHA_2626	AHA_2626		AHA_2626	2927966	2928319	-	conserved hypothetical protein	identified by match to protein family HMM PF07866	gene	gene2624	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2626
AHA_2627	AHA_2627		AHA_2627	2928558	2929772	+	aminotransferase%2C class I and II	identified by match to protein family HMM PF00155	gene	gene2625	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2627
AHA_2628	AHA_2628		AHA_2628	2929838	2931313	-	arginine/ornithine antiporter	identified by match to protein family HMM PF03606	gene	gene2626	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2628
AHA_2629	AHA_2629		AHA_2629	2931477	2932670	-	trans-2-enoyl-CoA reductase	identified by match to protein family HMM PF07055	gene	gene2627	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2629
AHA_2630	AHA_2630		AHA_2630	2932995	2934293	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229	gene	gene2628	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2630
AHA_2631	AHA_2631		AHA_2631	2934354	2934551	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2630	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2631
AHA_2632	AHA_2632		AHA_2632	2934330	2934536	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2629	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2632
AHA_2633	AHA_2633		AHA_2633	2934602	2935642	-	integral membrane protein DUF6	identified by match to protein family HMM PF00892	gene	gene2631	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2633
AHA_2634	AHA_2634	rnfA	rnfA	2935611	2936192	+	electron transport complex%2C RnfABCDGE type%2C A subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01943	gene	gene2632	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2634
AHA_2635	AHA_2635	rnfB	rnfB	2936197	2936760	+	electron transport complex%2C RnfABCDGE type%2C B subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF04060%3B match to protein family HMM TIGR01944	gene	gene2633	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2635
AHA_2636	AHA_2636	rnfC	rnfC	2936767	2939322	+	electron transport complex%2C RnfABCDGE type%2C C subunit	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01512%3B match to protein family HMM TIGR01945	gene	gene2634	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2636
AHA_2637	AHA_2637	rnfD	rnfD	2939326	2940378	+	electron transport complex%2C RnfABCDGE type%2C D subunit	identified by match to protein family HMM PF03116%3B match to protein family HMM TIGR01946	gene	gene2635	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2637
AHA_2638	AHA_2638	rnfG	rnfG	2940413	2941045	+	electron transport complex%2C RnfABCDGE type%2C G subunit	identified by match to protein family HMM PF04205%3B match to protein family HMM TIGR01947	gene	gene2636	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2638
AHA_2639	AHA_2639	rnfE	rnfE	2941077	2941820	+	electron transport complex%2C RnfABCDGE type%2C E subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01948	gene	gene2637	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2639
AHA_2640	AHA_2640	nth	nth	2941835	2942476	+	endonuclease III	identified by match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01083	gene	gene2638	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2640
AHA_2641	AHA_2641	gloA	gloA	2942609	2943022	+	lactoylglutathione lyase	identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR00068	gene	gene2639	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2641
AHA_2642	AHA_2642		AHA_2642	2943087	2943950	-	sodium-type flagellar protein MotY	identified by match to protein family HMM PF00691	gene	gene2640	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2642
AHA_2643	AHA_2643		AHA_2643	2944031	2945812	-	methyl-accepting chemotaxis transducer	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene2641	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2643
AHA_2644	AHA_2644	rnt	rnt	2946090	2946812	+	ribonuclease T	identified by match to protein family HMM PF00929%3B match to protein family HMM TIGR01298	gene	gene2642	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2644
AHA_2645	AHA_2645		AHA_2645	2947060	2948382	+	transporter%2C gluconate:H+ symporter (GntP) family	identified by match to protein family HMM PF03553%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808	gene	gene2643	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2645
AHA_2646	AHA_2646		AHA_2646	2948749	2950677	-	ATP-dependent RNA helicase	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF03880	gene	gene2644	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2646
AHA_2647	AHA_2647		AHA_2647	2950825	2951286	-	esterase YdiI	identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00369	gene	gene2645	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2647
AHA_2648	AHA_2648		AHA_2648	2951413	2951901	-	conserved hypothetical protein		gene	gene2646	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2648
AHA_2649	AHA_2649		AHA_2649	2951901	2955056	-	FAD linked oxidases%2C C-terminal domain protein	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02913	gene	gene2647	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2649
AHA_2650	AHA_2650		AHA_2650	2955130	2956056	+	hypothetical membrane protein	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene2648	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2650
AHA_2651	AHA_2651		AHA_2651	2956369	2957904	+	inner membrane protein YoaE	identified by match to protein family HMM PF00571%3B match to protein family HMM PF03471%3B match to protein family HMM PF03741	gene	gene2649	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2651
AHA_2652	AHA_2652		AHA_2652	2958093	2959214	+	morphinone reductase	identified by match to protein family HMM PF00724	gene	gene2650	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2652
AHA_2653	AHA_2653	add-2	add-2	2959303	2960322	-	adenosine deaminase	identified by match to protein family HMM PF00962%3B match to protein family HMM TIGR01430	gene	gene2651	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2653
AHA_2654	AHA_2654		AHA_2654	2960537	2961286	+	protein NagD	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01460	gene	gene2652	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2654
AHA_2655	AHA_2655		AHA_2655	2961356	2962930	+	glutathione-regulated potassium-efflux system protein KefC	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254	gene	gene2653	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2655
AHA_2656	AHA_2656		AHA_2656	2963056	2963424	+	transcriptional regulator	identified by match to protein family HMM PF05899	gene	gene2654	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2656
AHA_2657	AHA_2657	asnB	asnB	2963618	2965282	+	asparagine synthase (glutamine-hydrolyzing)	identified by match to protein family HMM PF00310%3B match to protein family HMM PF00733%3B match to protein family HMM TIGR01536	gene	gene2655	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2657
AHA_2658	AHA_2658		AHA_2658	2965462	2965962	+	conserved hypothetical protein		gene	gene2656	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2658
AHA_2659	AHA_2659		AHA_2659	2966084	2966707	+	glutathione S-transferase family protein	identified by match to protein family HMM PF02798	gene	gene2657	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2659
AHA_2660	AHA_2660	maiA	maiA	2966786	2967487	-	maleylacetoacetate isomerase	identified by match to protein family HMM PF02798%3B match to protein family HMM TIGR01262	gene	gene2658	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2660
AHA_2661	AHA_2661		AHA_2661	2967497	2968495	-	fumarylacetoacetate hydrolase family protein	identified by match to protein family HMM PF01557	gene	gene2659	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2661
AHA_2662	AHA_2662	hmgA	hmgA	2968507	2969667	-	homogentisate 1%2C2-dioxygenase	identified by match to protein family HMM PF04209	gene	gene2660	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2662
AHA_2663	AHA_2663	hppD	hppD	2969715	2970812	-	4-hydroxyphenylpyruvate dioxygenase	identified by match to protein family HMM PF00903%3B match to protein family HMM TIGR01263	gene	gene2661	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2663
AHA_2664	AHA_2664		AHA_2664	2971050	2971718	-	conserved hypothetical protein		gene	gene2662	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2664
AHA_2665	AHA_2665		AHA_2665	2971715	2972374	-	pseudouridine synthase Rlu family protein	identified by match to protein family HMM PF00849%3B match to protein family HMM TIGR01621	gene	gene2663	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2665
AHA_2666	AHA_2666		AHA_2666	2972461	2974044	+	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2664	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2666
AHA_2667	AHA_2667		AHA_2667	2974110	2975663	-	aerotaxis receptor Aer	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229	gene	gene2665	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2667
AHA_2668	AHA_2668		AHA_2668	2975821	2976507	-	virulence protein		gene	gene2666	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2668
AHA_2669	AHA_2669		AHA_2669	2976517	2979066	-	putative membrane protein	identified by match to protein family HMM PF04329%3B match to protein family HMM PF04330%3B match to protein family HMM PF04331	gene	gene2667	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2669
AHA_2670	AHA_2670		AHA_2670	2979544	2981169	-	putative sulfatase	identified by match to protein family HMM PF00884%3B match to protein family HMM PF08019	gene	gene2668	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2670
AHA_2671	AHA_2671		AHA_2671	2981550	2982329	+	protein of unknown function	identified by match to protein family HMM PF03988	gene	gene2669	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2671
AHA_2672	AHA_2672		AHA_2672	2982415	2983629	+	general substrate transporter:Major facilitator superfamily MFS_1	identified by match to protein family HMM PF00083%3B match to protein family HMM PF07690	gene	gene2670	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2672
AHA_2673	AHA_2673		AHA_2673	2983700	2983787	-	tRNA-Ser		tRNA	gene2671	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2673
AHA_2674	AHA_2674		AHA_2674	2983971	2984627	+	putative membrane protein	identified by match to protein family HMM PF01027	gene	gene2672	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2674
AHA_2675	AHA_2675		AHA_2675	2984791	2986944	+	putative membrane protein	identified by match to protein family HMM PF05976%3B match to protein family HMM TIGR01666%3B match to protein family HMM TIGR01667	gene	gene2673	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2675
AHA_2676	AHA_2676		AHA_2676	2986965	2987309	+	dissimilatory sulfite reductase%2C gamma subunit	identified by match to protein family HMM PF04358	gene	gene2674	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2676
AHA_2677	AHA_2677		AHA_2677	2987367	2988167	-	protein DedD	identified by match to protein family HMM PF05036	gene	gene2675	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2677
AHA_2678	AHA_2678	folC	folC	2988242	2989489	-	FolC bifunctional protein	identified by similarity to SP:P08192%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01499	gene	gene2676	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2678
AHA_2679	AHA_2679	accD	accD	2989504	2990367	-	acetyl-CoA carboxylase%2C carboxyl transferase%2C beta subunit	identified by match to protein family HMM TIGR00515	gene	gene2677	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2679
AHA_2680	AHA_2680	truA	truA	2990487	2991296	-	tRNA pseudouridine synthase A	identified by match to protein family HMM PF01416%3B match to protein family HMM TIGR00071	gene	gene2678	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2680
AHA_2681	AHA_2681		AHA_2681	2991476	2993674	-	motility protein FimV		gene	gene2679	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2681
AHA_2682	AHA_2682	asd-2	asd-2	2993950	2994966	-	aspartate-semialdehyde dehydrogenase	identified by match to protein family HMM PF01118%3B match to protein family HMM PF02774%3B match to protein family HMM TIGR01296	gene	gene2680	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2682
AHA_2683	AHA_2683		AHA_2683	2995109	2996239	-	erythronate-4-phosphate dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene2681	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2683
AHA_2684	AHA_2684		AHA_2684	2996562	2997308	+	phosphatidylglycerophosphatase B	identified by match to protein family HMM PF01569	gene	gene2682	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2684
AHA_2685	AHA_2685		AHA_2685	2997380	2998210	-	outer membrane lipoprotein	identified by match to protein family HMM PF03180	gene	gene2683	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2685
AHA_2686	AHA_2686		AHA_2686	2998447	2998986	+	isochorismatase family protein	identified by match to protein family HMM PF00857	gene	gene2684	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2686
AHA_2687	AHA_2687		AHA_2687	2999464	3001338	+	microbial serine proteinase	identified by match to protein family HMM PF00082%3B match to protein family HMM PF01483	gene	gene2685	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2687
AHA_2688	AHA_2688		AHA_2688	3001356	3001814	+	conserved hypothetical protein		gene	gene2686	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2688
AHA_2689	AHA_2689		AHA_2689	3001952	3004618	+	beta-glucosidase	identified by match to protein family HMM PF00933%3B match to protein family HMM PF01915	gene	gene2687	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2689
AHA_2690	AHA_2690		AHA_2690	3004713	3006098	-	transcriptional regulator%2C AraC family protein	identified by match to protein family HMM PF00165	gene	gene2688	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2690
AHA_2691	AHA_2691	ppsA	ppsA	3005995	3008367	-	phosphoenolpyruvate synthase	identified by match to protein family HMM PF00391%3B match to protein family HMM PF01326%3B match to protein family HMM PF02896%3B match to protein family HMM TIGR01418	gene	gene2689	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2691
AHA_2692	AHA_2692		AHA_2692	3008682	3009494	+	conserved hypothetical protein	identified by similarity to SP:Q8EDU8%3B match to protein family HMM PF03618	gene	gene2690	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2692
AHA_2693	AHA_2693		AHA_2693	3009584	3009871	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2691	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2693
AHA_2694	AHA_2694		AHA_2694	3010234	3011610	+	aromatic amino acid transport protein AroP	identified by match to protein family HMM PF00324	gene	gene2692	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2694
AHA_2695	AHA_2695		AHA_2695	3011858	3012577	-	putative exported protein	identified by match to protein family HMM PF04402	gene	gene2693	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2695
AHA_2696	AHA_2696		AHA_2696	3012619	3013176	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2694	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2696
AHA_2697	AHA_2697		AHA_2697	3013263	3026045	-	structural toxin protein RtxA	identified by similarity to GB:CAH14915.1%3B match to protein family HMM PF00092%3B match to protein family HMM PF00353	gene	gene2695	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2697
AHA_2698	AHA_2698		AHA_2698	3026202	3028127	-	diguanylate cyclase/phosphodiesterase domain 1	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2696	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2698
AHA_2699	AHA_2699		AHA_2699	3029012	3030340	-	agglutination protein	identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01844	gene	gene2697	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2699
AHA_2700	AHA_2700		AHA_2700	3030376	3031794	-	secretion protein%2C HlyD family	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01843	gene	gene2698	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2700
AHA_2701	AHA_2701		AHA_2701	3031787	3033931	-	toxin secretion ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene2699	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2701
AHA_2702	AHA_2702		AHA_2702	3034335	3035270	-	radical SAM protein%2C family	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR01212	gene	gene2700	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2702
AHA_2703	AHA_2703		AHA_2703	3035884	3040341	+	glutamate synthase [NADPH] large chain	identified by match to protein family HMM PF00310%3B match to protein family HMM PF01493%3B match to protein family HMM PF01645%3B match to protein family HMM PF04898	gene	gene2701	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2703
AHA_2704	AHA_2704		AHA_2704	3040354	3041769	+	glutamate synthase [NADPH] small chain	identified by match to protein family HMM PF00070%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01318	gene	gene2702	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2704
AHA_2705	AHA_2705		AHA_2705	3041856	3042617	-	amino acid ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2703	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2705
AHA_2706	AHA_2706		AHA_2706	3042614	3043291	-	L-cystine ABC transporter%2C permease protein	identified by similarity to SP:P42200%3B match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene2704	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2706
AHA_2707	AHA_2707		AHA_2707	3043328	3044101	-	amino acid ABC transporter%2C periplasmic amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene2705	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2707
AHA_2708	AHA_2708		AHA_2708	3044369	3044779	-	conserved hypothetical protein		gene	gene2706	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2708
AHA_2709	AHA_2709		AHA_2709	3044789	3045367	-	O-methyltransferase	identified by match to protein family HMM PF01596	gene	gene2707	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2709
AHA_2710	AHA_2710	soxR	soxR	3045436	3045903	-	redox-sensitive transcriptional activator SoxR	identified by match to protein family HMM PF00376%3B match to protein family HMM TIGR01950	gene	gene2708	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2710
AHA_2711	AHA_2711		AHA_2711	3045976	3046968	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2709	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2711
AHA_2712	AHA_2712		AHA_2712	3046988	3047419	-	extracellular protease		gene	gene2710	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2712
AHA_2713	AHA_2713		AHA_2713	3047487	3048527	-	extracellular protease	identified by match to protein family HMM PF02102	gene	gene2711	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2713
AHA_2714	AHA_2714		AHA_2714	3048800	3049438	-	conserved hypothetical protein		gene	gene2712	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2714
AHA_2715	AHA_2715		AHA_2715	3049538	3050764	-	putative ATP-dependent RNA helicase RhlE	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene2713	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2715
AHA_2716	AHA_2716		AHA_2716	3051085	3051618	-	spermidine N(1)-acetyltransferase	identified by match to protein family HMM PF00583	gene	gene2714	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2716
AHA_2717	AHA_2717		AHA_2717	3051718	3052368	-	inner membrane protein YqjA		gene	gene2715	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2717
AHA_2718	AHA_2718		AHA_2718	3052599	3054182	-	chase4 domain family	identified by match to protein family HMM PF00672%3B match to protein family HMM PF01590%3B match to protein family HMM PF05228	gene	gene2716	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2718
AHA_2719	AHA_2719		AHA_2719	3054404	3055360	+	putative exported protein		gene	gene2717	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2719
AHA_2720	AHA_2720		AHA_2720	3055495	3056451	+	DNA-binding protein	identified by match to protein family HMM PF01396	gene	gene2718	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2720
AHA_2721	AHA_2721		AHA_2721	3057209	3058462	-	conserved hypothetical protein	identified by match to protein family HMM PF07759	gene	gene2719	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2721
AHA_2722	AHA_2722	leuA-2	leuA-2	3058555	3060213	-	2-isopropylmalate synthase	identified by match to protein family HMM PF00682%3B match to protein family HMM TIGR00970	gene	gene2720	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2722
AHA_2723	AHA_2723	carB	carB	3060699	3063935	-	carbamoyl-phosphate synthase%2C large subunit	identified by match to protein family HMM PF00289%3B match to protein family HMM PF02142%3B match to protein family HMM PF02222%3B match to protein family HMM PF02655%3B match to protein family HMM PF02786%3B match to protein family HMM PF02787%3B match to protein family HMM TIGR01369	gene	gene2721	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2723
AHA_2724	AHA_2724	carA	carA	3063952	3065088	-	carbamoyl-phosphate synthase%2C small subunit	identified by match to protein family HMM PF00117%3B match to protein family HMM PF00988%3B match to protein family HMM TIGR01368	gene	gene2722	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2724
AHA_2725	AHA_2725	dapB	dapB	3065777	3066670	-	dihydrodipicolinate reductase	identified by match to protein family HMM PF01113%3B match to protein family HMM PF05173%3B match to protein family HMM TIGR00036	gene	gene2723	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2725
AHA_2726	AHA_2726		AHA_2726	3066900	3068234	+	Na+/H+ antiporter family protein	identified by match to protein family HMM PF03553	gene	gene2724	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2726
AHA_2727	AHA_2727		AHA_2727	3068367	3068966	+	5%2C10-methenyltetrahydrofolate synthetase	identified by match to protein family HMM PF01812%3B match to protein family HMM TIGR02727	gene	gene2725	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2727
AHA_2728	AHA_2728	rpiA	rpiA	3069152	3069805	+	ribose 5-phosphate isomerase A	identified by match to protein family HMM PF06026%3B match to protein family HMM TIGR00021	gene	gene2726	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2728
AHA_2729	AHA_2729		AHA_2729	3069808	3069927	+	ribose-5-phosphate isomerase A		gene	gene2727	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2729
AHA_2730	AHA_2730		AHA_2730	3069896	3070048	+	ribose-5-phosphate isomerase A		gene	gene2728	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2730
AHA_2731	AHA_2731		AHA_2731	3070152	3071489	+	D-3-phosphoglycerate dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF01842%3B match to protein family HMM PF02826	gene	gene2729	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2731
AHA_2732	AHA_2732	dgkA	dgkA	3071696	3072076	-	diacylglycerol kinase	identified by match to protein family HMM PF01219	gene	gene2730	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2732
AHA_2733	AHA_2733		AHA_2733	3072070	3073296	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR00034	gene	gene2731	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2733
AHA_2734	AHA_2734		AHA_2734	3073303	3073761	+	aminoglycoside 6'-N-acetyltransferase Iz	identified by match to protein family HMM PF00583	gene	gene2732	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2734
AHA_2735	AHA_2735		AHA_2735	3073783	3074532	-	vitamin B12 import ATP-binding protein BtuD	identified by match to protein family HMM PF00005	gene	gene2733	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2735
AHA_2736	AHA_2736		AHA_2736	3074555	3075562	-	vitamin B12 import system permease protein BtuC	identified by match to protein family HMM PF01032	gene	gene2734	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2736
AHA_2737	AHA_2737		AHA_2737	3075663	3076394	-	extracellular solute-binding protein%2C putative		gene	gene2735	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2737
AHA_2738	AHA_2738		AHA_2738	3076508	3076864	+	transmembrane signal peptide protein	identified by match to protein family HMM PF04342	gene	gene2736	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2738
AHA_2739	AHA_2739		AHA_2739	3076925	3078064	+	pilus retraction protein PilT	identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420	gene	gene2737	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2739
AHA_2740	AHA_2740	glgC-2	glgC-2	3078348	3079619	+	glucose-1-phosphate adenylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02091	gene	gene2738	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2740
AHA_2741	AHA_2741		AHA_2741	3079686	3080234	+	conserved hypothetical protein		gene	gene2739	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2741
AHA_2742	AHA_2742		AHA_2742	3080349	3080591	-	transcriptional regulator%2C LuxR family		gene	gene2740	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2742
AHA_2743	AHA_2743	feoB	feoB	3080588	3082861	-	ferrous iron transport protein B	identified by match to protein family HMM PF01926%3B match to protein family HMM PF02421%3B match to protein family HMM PF07664%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00437	gene	gene2741	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2743
AHA_2744	AHA_2744		AHA_2744	3082917	3083144	-	conserved domain protein	identified by match to protein family HMM PF04023	gene	gene2742	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2744
AHA_2745	AHA_2745	yciH	yciH	3083219	3083593	+	translation initation factor SUI1%2C putative	identified by match to protein family HMM PF01253	gene	gene2743	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2745
AHA_2746	AHA_2746		AHA_2746	3083850	3084407	+	integral membrane protein	identified by match to protein family HMM PF01169	gene	gene2744	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2746
AHA_2747	AHA_2747		AHA_2747	3084439	3085548	+	putative membrane protein		gene	gene2745	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2747
AHA_2748	AHA_2748		AHA_2748	3085541	3086548	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2746	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2748
AHA_2749	AHA_2749		AHA_2749	3086545	3087042	+	putative membrane protein		gene	gene2747	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2749
AHA_2750	AHA_2750		AHA_2750	3087116	3087862	+	conserved protein		gene	gene2748	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2750
AHA_2751	AHA_2751		AHA_2751	3087964	3088710	+	conserved hypothetical protein		gene	gene2749	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2751
AHA_2752	AHA_2752		AHA_2752	3088772	3089785	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM TIGR00254	gene	gene2750	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2752
AHA_2753	AHA_2753		AHA_2753	3090472	3090780	-	conserved hypothetical protein		gene	gene2751	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2753
AHA_2754	AHA_2754		AHA_2754	3092623	3094152	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene2752	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2754
AHA_2755	AHA_2755		AHA_2755	3094521	3094703	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2753	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2755
AHA_2756	AHA_2756	cysS	cysS	3094830	3096206	-	cysteinyl-tRNA synthetase	identified by match to protein family HMM PF01406%3B match to protein family HMM TIGR00435	gene	gene2754	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2756
AHA_2757	AHA_2757	ppiB	ppiB	3096397	3096894	+	peptidyl-prolyl cis-trans isomerase B	identified by similarity to SP:P23869%3B match to protein family HMM PF00160	gene	gene2755	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2757
AHA_2758	AHA_2758		AHA_2758	3096884	3097579	+	HIT family protein%2C putative		gene	gene2756	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2758
AHA_2759	AHA_2759	lpxH	lpxH	3097576	3098301	+	UDP-2%2C3-diacylglucosamine hydrolase	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR01854	gene	gene2757	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2759
AHA_2760	AHA_2760		AHA_2760	3098388	3099341	-	protein NrfD	identified by match to protein family HMM PF03916	gene	gene2758	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2760
AHA_2761	AHA_2761		AHA_2761	3099390	3100058	-	4Fe-4S binding domain protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR01409	gene	gene2759	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2761
AHA_2762	AHA_2762		AHA_2762	3100055	3100684	-	formate-dependent nitrite reductase		gene	gene2760	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2762
AHA_2763	AHA_2763		AHA_2763	3100834	3101445	-	cytochrome c553	identified by match to protein family HMM PF00034	gene	gene2761	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2763
AHA_2764	AHA_2764		AHA_2764	3101576	3103807	+	deCa-heme c-type cytochrome		gene	gene2762	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2764
AHA_2765	AHA_2765		AHA_2765	3103864	3104835	+	nitrate/tmao reductase	identified by match to protein family HMM TIGR01905	gene	gene2763	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2765
AHA_2766	AHA_2766		AHA_2766	3104847	3106838	+	outer membrane protein		gene	gene2764	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2766
AHA_2767	AHA_2767		AHA_2767	3106994	3109075	-	probable chemotaxis transducer%2C putative	identified by match to protein family HMM PF00015%3B match to protein family HMM PF07238	gene	gene2765	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2767
AHA_2768	AHA_2768		AHA_2768	3109630	3110919	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM TIGR00229	gene	gene2766	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2768
AHA_2769	AHA_2769		AHA_2769	3111150	3111236	-	tRNA-Leu		tRNA	gene2767	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2769
AHA_2770	AHA_2770		AHA_2770	3111278	3111351	-	tRNA-Cys		tRNA	gene2768	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2770
AHA_2771	AHA_2771		AHA_2771	3111386	3111461	-	tRNA-Gly		tRNA	gene2769	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2771
AHA_2772	AHA_2772	pgsA	pgsA	3111643	3112197	-	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	identified by match to protein family HMM PF01066%3B match to protein family HMM TIGR00560	gene	gene2770	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2772
AHA_2773	AHA_2773	uvrC	uvrC	3112501	3114351	-	excinuclease ABC%2C C subunit	identified by match to protein family HMM PF00633%3B match to protein family HMM PF01541%3B match to protein family HMM PF02151%3B match to protein family HMM TIGR00194	gene	gene2771	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2773
AHA_2774	AHA_2774	uvrY	uvrY	3114540	3115184	-	response regulator UvrY	identified by similarity to SP:P07027%3B match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene2772	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2774
AHA_2775	AHA_2775	kdsB	kdsB	3115397	3116158	-	3-deoxy-D-manno-octulosonate cytidylyltransferase	identified by match to protein family HMM PF02348%3B match to protein family HMM TIGR00466	gene	gene2773	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2775
AHA_2776	AHA_2776		AHA_2776	3116155	3116343	-	conserved domain protein	identified by match to protein family HMM PF03966	gene	gene2774	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2776
AHA_2777	AHA_2777	lpxK	lpxK	3116465	3117466	-	tetraacyldisaccharide 4'-kinase	identified by match to protein family HMM PF02606%3B match to protein family HMM TIGR00682	gene	gene2775	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2777
AHA_2778	AHA_2778	msbA	msbA	3117466	3119235	-	lipid A export permease/ATP-binding protein MsbA	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02203	gene	gene2776	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2778
AHA_2779	AHA_2779		AHA_2779	3119468	3121753	-	DNA internalization-related competence protein ComEC/Rec2	identified by match to protein family HMM PF00753%3B match to protein family HMM PF03772%3B match to protein family HMM TIGR00360%3B match to protein family HMM TIGR00361	gene	gene2777	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2779
AHA_2780	AHA_2780		AHA_2780	3121697	3122215	+	flagellar biosynthesis protein FlhF		gene	gene2778	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2780
AHA_2781	AHA_2781		AHA_2781	3122209	3122703	+	conserved hypothetical protein		gene	gene2779	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2781
AHA_2782	AHA_2782		AHA_2782	3122826	3124334	+	conserved hypothetical protein	identified by similarity to GB:CAI07148.1%3B match to protein family HMM PF05872	gene	gene2780	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2782
AHA_2783	AHA_2783	aspC	aspC	3124412	3125602	-	aspartate aminotransferase	identified by match to protein family HMM PF00155	gene	gene2781	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2783
AHA_2784	AHA_2784		AHA_2784	3125778	3126653	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2782	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2784
AHA_2785	AHA_2785		AHA_2785	3126950	3128017	-	outer membrane protein	identified by match to protein family HMM PF00267	gene	gene2783	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2785
AHA_2786	AHA_2786		AHA_2786	3128351	3130471	+	probable ATP-dependent helicase DinG		gene	gene2784	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2786
AHA_2787	AHA_2787		AHA_2787	3130645	3131304	+	conserved hypothetical protein		gene	gene2785	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2787
AHA_2788	AHA_2788		AHA_2788	3131326	3132285	+	histone deacetylase/AcuC/AphA family protein	identified by match to protein family HMM PF00850	gene	gene2786	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2788
AHA_2789	AHA_2789		AHA_2789	3132464	3133612	-	major facilitator family transporter	identified by match to protein family HMM PF07690	gene	gene2787	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2789
AHA_2790	AHA_2790		AHA_2790	3133985	3134935	-	GTP-binding protein	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00650	gene	gene2788	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2790
AHA_2791	AHA_2791		AHA_2791	3135268	3136659	+	alkaline phosphatase%2C placental type	identified by match to protein family HMM PF00245	gene	gene2789	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2791
AHA_2792	AHA_2792		AHA_2792	3136671	3138077	+	alkaline phosphatase%2C tissue-nonspecific isozyme	identified by match to protein family HMM PF00245	gene	gene2790	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2792
AHA_2793	AHA_2793		AHA_2793	3138128	3138811	+	putative exported protein		gene	gene2791	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2793
AHA_2794	AHA_2794		AHA_2794	3138865	3139623	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2792	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2794
AHA_2795	AHA_2795	rnk	rnk	3139856	3140251	+	regulator of nucleoside diphosphate kinase	identified by match to protein family HMM PF01272	gene	gene2793	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2795
AHA_2796	AHA_2796		AHA_2796	3140441	3141031	+	transcriptional regulatory protein UhpA	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene2794	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2796
AHA_2797	AHA_2797	uhpB	uhpB	3141028	3142548	+	sensor histidine kinase UhpB	identified by similarity to SP:P09835%3B match to protein family HMM PF02518%3B match to protein family HMM PF05231%3B match to protein family HMM PF07730	gene	gene2795	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2797
AHA_2798	AHA_2798		AHA_2798	3142576	3143904	+	regulatory protein UhpC	identified by match to protein family HMM PF07690%3B match to protein family HMM TIGR00881	gene	gene2796	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2798
AHA_2799	AHA_2799		AHA_2799	3143909	3145048	-	diguanylate cyclase/phosphodiesterase domain 1	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene2797	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2799
AHA_2800	AHA_2800		AHA_2800	3145487	3146338	+	amino acid ABC transporter%2C periplasmic amino acid-binding protein	identified by match to protein family HMM PF00497	gene	gene2798	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2800
AHA_2801	AHA_2801		AHA_2801	3146408	3147388	+	amino acid ABC transporter%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene2799	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2801
AHA_2802	AHA_2802		AHA_2802	3147372	3148115	+	glutamate transport ATP-binding protein GluA	identified by match to protein family HMM PF00005	gene	gene2800	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2802
AHA_2803	AHA_2803		AHA_2803	3148187	3148636	-	conserved hypothetical protein		gene	gene2801	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2803
AHA_2804	AHA_2804		AHA_2804	3148887	3149654	-	ABC-type amino acid transport/signal transduction systems%2C periplasmic component/domain		gene	gene2802	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2804
AHA_2805	AHA_2805		AHA_2805	3149812	3150723	+	C-5 sterol desaturase		gene	gene2803	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2805
AHA_2806	AHA_2806		AHA_2806	3150810	3152210	-	arginine/ornithine antiporter	identified by match to protein family HMM PF00324	gene	gene2804	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2806
AHA_2807	AHA_2807		AHA_2807	3152220	3153122	-	homocysteine S-methyltransferase	identified by match to protein family HMM PF02574	gene	gene2805	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2807
AHA_2808	AHA_2808		AHA_2808	3153392	3153928	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2806	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2808
AHA_2809	AHA_2809		AHA_2809	3153954	3155273	-	putative transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene2807	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2809
AHA_2810	AHA_2810	phoU	phoU	3155466	3156176	-	phosphate transport system regulatory protein PhoU	identified by match to protein family HMM PF01895%3B match to protein family HMM TIGR02135	gene	gene2808	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2810
AHA_2811	AHA_2811	pstB	pstB	3156287	3157105	-	phosphate ABC transporter%2C ATP-binding protein PstB	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00972	gene	gene2809	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2811
AHA_2812	AHA_2812		AHA_2812	3157215	3158864	-	transmembrane component of the phosphate specific transport complex	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR00974	gene	gene2810	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2812
AHA_2813	AHA_2813	pstC	pstC	3158897	3161134	-	phosphate ABC transporter%2C permease protein PstC	part of the evidence for the annotation of this gene is based on the presence of the gene in a cluster with related functions%3B identified by match to protein family HMM PF00528	gene	gene2811	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2813
AHA_2814	AHA_2814		AHA_2814	3161341	3161880	-	tRNA-specific adenosine deaminase	identified by match to protein family HMM PF00383	gene	gene2812	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2814
AHA_2815	AHA_2815		AHA_2815	3162154	3162230	+	tRNA-Pro		tRNA	gene2813	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2815
AHA_2816	AHA_2816	aceB	aceB	3163381	3164988	+	malate synthase A	identified by match to protein family HMM PF01274%3B match to protein family HMM TIGR01344	gene	gene2814	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2816
AHA_2817	AHA_2817	aceA	aceA	3165064	3166377	+	isocitrate lyase	identified by match to protein family HMM PF00463%3B match to protein family HMM TIGR01346	gene	gene2815	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2817
AHA_2818	AHA_2818	dnaA-2	dnaA-2	3166627	3167424	-	chromosomal replication initiator protein DnaA	identified by match to protein family HMM PF00308	gene	gene2816	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2818
AHA_2819	AHA_2819		AHA_2819	3167544	3168572	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2817	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2819
AHA_2820	AHA_2820	upp	upp	3168716	3169342	-	uracil phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01091	gene	gene2818	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2820
AHA_2821	AHA_2821	purM	purM	3169518	3170555	+	phosphoribosylformylglycinamidine cyclo-ligase	identified by match to protein family HMM PF00586%3B match to protein family HMM PF02769%3B match to protein family HMM TIGR00878	gene	gene2819	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2821
AHA_2822	AHA_2822	purN	purN	3170576	3171226	+	phosphoribosylglycinamide formyltransferase	identified by match to protein family HMM PF00551%3B match to protein family HMM TIGR00639	gene	gene2820	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2822
AHA_2823	AHA_2823		AHA_2823	3171345	3172106	-	conserved hypothetical protein	identified by match to protein family HMM PF01784%3B match to protein family HMM TIGR00486	gene	gene2821	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2823
AHA_2824	AHA_2824		AHA_2824	3172254	3173597	-	transcriptional activator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene2822	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2824
AHA_2825	AHA_2825		AHA_2825	3173659	3174693	-	two-component sensor kinase protein	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene2823	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2825
AHA_2826	AHA_2826		AHA_2826	3174800	3176218	-	FleQ protein	identified by match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728	gene	gene2824	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2826
AHA_2827	AHA_2827		AHA_2827	3176500	3177336	-	topoisomerase DNA binding C4 zinc finger domain protein	identified by match to protein family HMM PF01396	gene	gene2825	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2827
AHA_2828	AHA_2828		AHA_2828	3177296	3178093	+	ACT domain protein	identified by match to protein family HMM PF01842	gene	gene2826	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2828
AHA_2829	AHA_2829	ppk	ppk	3178169	3180238	+	polyphosphate kinase	identified by match to protein family HMM PF02503	gene	gene2827	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2829
AHA_2830	AHA_2830		AHA_2830	3180228	3181718	+	exopolyphosphatase	identified by match to protein family HMM PF02541	gene	gene2828	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2830
AHA_2831	AHA_2831	mgtE-1	mgtE-1	3181783	3183126	-	magnesium transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM TIGR00400	gene	gene2829	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2831
AHA_2832	AHA_2832	flgL	flgL	3183631	3184839	-	flagellar hook-associated protein 3	identified by match to protein family HMM TIGR02550	gene	gene2830	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2832
AHA_2833	AHA_2833	flgK	flgK	3184844	3186844	-	flagellar hook-associated protein FlgK	identified by similarity to GB:AAN08646.1%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02492	gene	gene2831	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2833
AHA_2834	AHA_2834	flgJ	flgJ	3186848	3187897	-	flagellar rod assembly protein/muramidase FlgJ	identified by similarity to GB:AAN08645.1%3B match to protein family HMM PF01832%3B match to protein family HMM TIGR02541	gene	gene2832	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2834
AHA_2835	AHA_2835	flgI	flgI	3187984	3189081	-	flagellar P-ring protein FlgI	identified by similarity to GB:AAN08644.1%3B match to protein family HMM PF02119	gene	gene2833	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2835
AHA_2836	AHA_2836	flgH	flgH	3189090	3189761	-	flagellar L-ring protein FlgH	identified by similarity to GB:AAN08643.1%3B match to protein family HMM PF02107	gene	gene2834	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2836
AHA_2837	AHA_2837	flgG	flgG	3189776	3190564	-	flagellar basal-body rod protein FlgG	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02488	gene	gene2835	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2837
AHA_2838	AHA_2838	flgF	flgF	3190579	3191325	-	flagellar basal-body rod protein FlgF	identified by similarity to GB:AAN08641.1%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR02490	gene	gene2836	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2838
AHA_2839	AHA_2839	flgE	flgE	3191461	3192795	-	flagellar hook protein FlgE	identified by match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM PF07559	gene	gene2837	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2839
AHA_2840	AHA_2840	flgD	flgD	3192806	3193534	-	flagellar hook capping protein	identified by similarity to GB:AAN08639.1%3B match to protein family HMM PF03963	gene	gene2838	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2840
AHA_2841	AHA_2841	flgC	flgC	3193550	3193969	-	flagellar basal-body rod protein FlgC	identified by similarity to GB:AAN08638.1%3B match to protein family HMM PF00460%3B match to protein family HMM PF06429%3B match to protein family HMM TIGR01395	gene	gene2839	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2841
AHA_2842	AHA_2842	flgB	flgB	3193969	3194367	-	flagellar basal-body rod protein FlgB	identified by similarity to GB:AAN08637.1%3B match to protein family HMM PF00460%3B match to protein family HMM TIGR01396	gene	gene2840	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2842
AHA_2843	AHA_2843	cheR-3	cheR-3	3194431	3195255	-	CheR methyltransferase%2C SAM binding domain	identified by match to protein family HMM PF01739%3B match to protein family HMM PF03705	gene	gene2841	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2843
AHA_2844	AHA_2844		AHA_2844	3195274	3196185	-	CheV	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584	gene	gene2842	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2844
AHA_2845	AHA_2845	flgA	flgA	3196156	3197013	+	flagella basal body P-ring formation protein FlgA	identified by similarity to GB:AAN08634.1%3B match to protein family HMM PF03240	gene	gene2843	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2845
AHA_2846	AHA_2846	flgM	flgM	3197104	3197424	+	anti-sigma-D factor	identified by similarity to GB:AAN08633.1%3B match to protein family HMM PF04316	gene	gene2844	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2846
AHA_2847	AHA_2847	flgN	flgN	3197424	3197837	+	flagellar protein FlgN	identified by match to protein family HMM PF05130	gene	gene2845	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2847
AHA_2848	AHA_2848		AHA_2848	3197895	3198437	-	phosphodiesterase YfcE	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00040	gene	gene2846	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2848
AHA_2849	AHA_2849		AHA_2849	3198448	3200211	-	periplasmic murein peptide-binding protein	identified by match to protein family HMM PF00496	gene	gene2847	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2849
AHA_2850	AHA_2850		AHA_2850	3200311	3201216	+	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene2848	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2850
AHA_2851	AHA_2851		AHA_2851	3201228	3201920	-	ribosomal small subunit pseudouridine synthase A	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene2849	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2851
AHA_2852	AHA_2852		AHA_2852	3203288	3203476	-	conserved hypothetical protein		gene	gene2851	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2852
AHA_2853	AHA_2853		AHA_2853	3202095	3203291	+	HD domain protein	identified by match to protein family HMM PF01966	gene	gene2850	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2853
AHA_2854	AHA_2854		AHA_2854	3203576	3204226	-	transaldolase%2C putative	identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00875	gene	gene2852	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2854
AHA_2855	AHA_2855		AHA_2855	3204355	3205251	+	pyruvate formate-lyase 2-activating enzyme	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR02494	gene	gene2853	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2855
AHA_2856	AHA_2856		AHA_2856	3205304	3207736	+	pyruvate formate-lyase	identified by match to protein family HMM PF01228%3B match to protein family HMM PF02901%3B match to protein family HMM TIGR01774	gene	gene2854	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2856
AHA_2857	AHA_2857		AHA_2857	3207829	3208575	+	putative HTH-type transcriptional regulator YciT	identified by match to protein family HMM PF00455%3B match to protein family HMM PF01022%3B match to protein family HMM PF08220	gene	gene2855	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2857
AHA_2858	AHA_2858		AHA_2858	3208505	3209596	+	transporter%2C 10 TMS drug/metabolite exporter (DME) family	identified by match to protein family HMM PF00892	gene	gene2856	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2858
AHA_2859	AHA_2859		AHA_2859	3209718	3211568	+	ABC-type oligopeptide transport system%2C periplasmic component	identified by match to protein family HMM PF00496	gene	gene2857	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2859
AHA_2860	AHA_2860		AHA_2860	3211665	3212057	-	conserved hypothetical protein		gene	gene2858	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2860
AHA_2861	AHA_2861		AHA_2861	3212151	3212708	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2859	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2861
AHA_2862	AHA_2862		AHA_2862	3213194	3213574	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2861	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2862
AHA_2863	AHA_2863		AHA_2863	3212959	3213207	+	conserved hypothetical protein	identified by match to protein family HMM TIGR02647	gene	gene2860	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2863
AHA_2864	AHA_2864		AHA_2864	3213623	3213832	-	conserved domain protein	identified by match to protein family HMM PF00313	gene	gene2862	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2864
AHA_2865	AHA_2865		AHA_2865	3214037	3215137	-	pyruvate/2-oxoglutarate dehydrogenase complex%2C dihydrolipoamide acyltransferase component	identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817	gene	gene2863	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2865
AHA_2866	AHA_2866		AHA_2866	3215134	3216120	-	pyruvate dehydrogenase E1 component%2C beta subunit	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780	gene	gene2864	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2866
AHA_2867	AHA_2867		AHA_2867	3216117	3217208	-	pyruvate dehydrogenase E1 component%2C alpha subunit	identified by match to protein family HMM PF00676	gene	gene2865	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2867
AHA_2868	AHA_2868		AHA_2868	3217490	3218515	-	succinylglutamate desuccinylase	identified by match to protein family HMM PF04952	gene	gene2866	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2868
AHA_2869	AHA_2869		AHA_2869	3218791	3219000	-	conserved hypothetical protein		gene	gene2867	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2869
AHA_2870	AHA_2870	tus	tus	3219523	3220416	+	DNA replication terminus site-binding protein	identified by match to protein family HMM PF05472%3B match to protein family HMM TIGR02648	gene	gene2868	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2870
AHA_2871	AHA_2871		AHA_2871	3220539	3224381	-	SNF2 family helicase	identified by match to protein family HMM PF00176%3B match to protein family HMM PF00271	gene	gene2869	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2871
AHA_2872	AHA_2872		AHA_2872	3224596	3225249	-	multidrug resistance protein A	identified by match to protein family HMM PF04337	gene	gene2870	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2872
AHA_2873	AHA_2873		AHA_2873	3225401	3227131	-	lipid A core - O-antigen ligase	identified by match to protein family HMM PF04932	gene	gene2871	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2873
AHA_2874	AHA_2874		AHA_2874	3227224	3229275	-	YjbH	identified by match to protein family HMM PF06082	gene	gene2872	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2874
AHA_2875	AHA_2875		AHA_2875	3229305	3230063	-	putative periplasmic protein		gene	gene2873	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2875
AHA_2876	AHA_2876		AHA_2876	3230060	3230749	-	conserved hypothetical protein		gene	gene2874	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2876
AHA_2877	AHA_2877		AHA_2877	3231196	3233370	-	tyrosine-protein kinase	identified by match to protein family HMM PF02706	gene	gene2875	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2877
AHA_2878	AHA_2878		AHA_2878	3233433	3233861	-	Low molecular weight protein-tyrosine-phosphatase ptp	identified by match to protein family HMM PF01451	gene	gene2876	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2878
AHA_2879	AHA_2879		AHA_2879	3234098	3235213	-	capsular polysaccharide transport protein	identified by match to protein family HMM PF02563	gene	gene2877	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2879
AHA_2880	AHA_2880		AHA_2880	3235549	3236715	-	UDP-glucose 6-dehydrogenase	identified by match to protein family HMM PF00984%3B match to protein family HMM PF01210%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene2878	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2880
AHA_2881	AHA_2881		AHA_2881	3236728	3237741	-	nucleotide sugar epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene2879	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2881
AHA_2882	AHA_2882		AHA_2882	3237765	3238838	-	putative membrane protein		gene	gene2880	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2882
AHA_2883	AHA_2883		AHA_2883	3238865	3239671	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene2881	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2883
AHA_2884	AHA_2884		AHA_2884	3239673	3240494	-	putative glycosyl transferase		gene	gene2882	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2884
AHA_2885	AHA_2885		AHA_2885	3240498	3241592	-	glycosyl transferase%2C group 1 family protein	identified by match to protein family HMM PF00534	gene	gene2883	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2885
AHA_2886	AHA_2886		AHA_2886	3241655	3242869	-	polysaccharide biosynthesis protein	identified by match to protein family HMM PF01943	gene	gene2884	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2886
AHA_2887	AHA_2887		AHA_2887	3242871	3243986	-	alanine dehydrogenase/pyridine nucleotide transhydrogenase domain protein	identified by match to protein family HMM PF01262	gene	gene2885	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2887
AHA_2888	AHA_2888		AHA_2888	3243979	3245001	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2886	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2888
AHA_2889	AHA_2889	wecA	wecA	3245060	3246139	-	undecaprenyl-phosphate alpha-N-acetylglucosaminyl 1-phosphatetransferase	identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR02380	gene	gene2887	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2889
AHA_2890	AHA_2890		AHA_2890	3246596	3247573	-	conserved hypothetical protein		gene	gene2888	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2890
AHA_2891	AHA_2891		AHA_2891	3247664	3249649	-	WbgZ	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF07993	gene	gene2889	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2891
AHA_2892	AHA_2892		AHA_2892	3249646	3250671	-	glycosyl transferase%2C group 4 family protein	identified by match to protein family HMM PF00953	gene	gene2890	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2892
AHA_2893	AHA_2893		AHA_2893	3250671	3251675	-	UDP-glucose 4-epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF03447%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene2891	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2893
AHA_2894	AHA_2894		AHA_2894	3251641	3252765	-	glycosyl transferase%2C group 1	identified by match to protein family HMM PF00534	gene	gene2892	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2894
AHA_2895	AHA_2895		AHA_2895	3252743	3253231	-	GDP-mannose mannosyl hydrolase	identified by match to protein family HMM PF00293	gene	gene2893	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2895
AHA_2896	AHA_2896		AHA_2896	3253246	3253863	-	acetyltransferase	identified by match to protein family HMM PF00132	gene	gene2894	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2896
AHA_2897	AHA_2897		AHA_2897	3253868	3255508	-	glycosyl transferase%2C group 1 family protein	identified by match to protein family HMM PF00534	gene	gene2895	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2897
AHA_2898	AHA_2898		AHA_2898	3255499	3257784	-	putative glycosytransferase		gene	gene2896	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2898
AHA_2899	AHA_2899		AHA_2899	3257781	3258539	-	RfbE%2C O-antigen export system ATP-binding protein RfbE	identified by match to protein family HMM PF00005	gene	gene2897	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2899
AHA_2900	AHA_2900		AHA_2900	3258536	3259321	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF01061	gene	gene2898	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2900
AHA_2901	AHA_2901		AHA_2901	3259386	3260474	-	perosamine synthetase%2C Per protein	identified by match to protein family HMM PF01041	gene	gene2899	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2901
AHA_2902	AHA_2902	gmd	gmd	3260477	3261598	-	GDP-mannose 4%2C6-dehydratase	identified by match to protein family HMM PF01370%3B match to protein family HMM TIGR01472	gene	gene2900	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2902
AHA_2903	AHA_2903		AHA_2903	3261613	3262977	-	phosphomannomutase	identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880	gene	gene2901	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2903
AHA_2904	AHA_2904		AHA_2904	3263008	3264405	-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	identified by match to protein family HMM PF00483%3B match to protein family HMM PF01050%3B match to protein family HMM PF07883%3B match to protein family HMM TIGR01479	gene	gene2902	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2904
AHA_2905	AHA_2905	rfbC-1	rfbC-1	3264408	3264971	-	dTDP-4-dehydrorhamnose 3%2C5-epimerase	identified by match to protein family HMM PF00908%3B match to protein family HMM TIGR01221	gene	gene2903	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2905
AHA_2906	AHA_2906	rfbA	rfbA	3265028	3265912	-	glucose-1-phosphate thymidylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01207	gene	gene2904	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2906
AHA_2907	AHA_2907	rfbD	rfbD	3266025	3266912	-	dTDP-4-dehydrorhamnose reductase	identified by match to protein family HMM PF01370%3B match to protein family HMM PF04321%3B match to protein family HMM TIGR01214	gene	gene2905	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2907
AHA_2908	AHA_2908	rfbB	rfbB	3266912	3267997	-	dTDP-glucose 4%2C6-dehydratase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01181	gene	gene2906	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2908
AHA_2909	AHA_2909		AHA_2909	3268759	3270174	-	outer membrane protein OprM	identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845	gene	gene2907	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2909
AHA_2910	AHA_2910		AHA_2910	3270167	3273316	-	AcrB protein	identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915	gene	gene2908	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2910
AHA_2911	AHA_2911	acrA	acrA	3273334	3274527	-	acriflavin resistance protein A	identified by similarity to SP:P31223%3B match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene2909	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2911
AHA_2912	AHA_2912		AHA_2912	3274670	3275311	+	TetR family regulatory protein	identified by match to protein family HMM PF00440	gene	gene2910	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2912
AHA_2913	AHA_2913		AHA_2913	3274867	3276066	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2911	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2913
AHA_2914	AHA_2914		AHA_2914	3276262	3277440	+	proton/sodium-glutamate symport protein	identified by match to protein family HMM PF00375	gene	gene2912	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2914
AHA_2915	AHA_2915		AHA_2915	3277489	3277857	-	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene2913	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2915
AHA_2916	AHA_2916	tesB	tesB	3277971	3278843	-	acyl-CoA thioesterase II	identified by match to protein family HMM PF02551%3B match to protein family HMM TIGR00189	gene	gene2914	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2916
AHA_2917	AHA_2917		AHA_2917	3279044	3279967	-	ribosomal large subunit pseudouridine synthase B	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00093	gene	gene2915	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2917
AHA_2918	AHA_2918	scpB	scpB	3279960	3280556	-	segregation and condensation protein B	identified by match to protein family HMM PF04079%3B match to protein family HMM TIGR00281	gene	gene2916	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2918
AHA_2919	AHA_2919		AHA_2919	3280592	3281548	-	segregation and condensation protein A	identified by match to protein family HMM PF02616	gene	gene2917	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2919
AHA_2920	AHA_2920		AHA_2920	3281496	3282185	-	Sua5/YciO/YrdC/YwlC family protein	identified by match to protein family HMM PF01300%3B match to protein family HMM TIGR00057	gene	gene2918	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2920
AHA_2921	AHA_2921		AHA_2921	3282219	3283100	-	PHP domain containing protein	identified by match to protein family HMM PF02811	gene	gene2919	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2921
AHA_2922	AHA_2922		AHA_2922	3283240	3283287	+	putative trp operon leader peptide		gene	gene2920	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2922
AHA_2923	AHA_2923	trpE	trpE	3283538	3285172	+	anthranilate synthase component I	identified by match to protein family HMM PF00425%3B match to protein family HMM PF04715%3B match to protein family HMM TIGR00565	gene	gene2921	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2923
AHA_2924	AHA_2924		AHA_2924	3285165	3285764	+	anthranilate synthase component II	identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566	gene	gene2922	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2924
AHA_2925	AHA_2925	trpD	trpD	3285775	3286803	+	anthranilate phosphoribosyltransferase	identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM TIGR01245	gene	gene2923	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2925
AHA_2926	AHA_2926	trpCF	trpCF	3286914	3288299	+	indole-3-glycerol phosphate synthase/N-(5'phosphoribosyl)anthranilate isomerase	identified by match to protein family HMM PF00218%3B match to protein family HMM PF00697	gene	gene2924	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2926
AHA_2927	AHA_2927	trpB	trpB	3288380	3289573	+	tryptophan synthase%2C beta subunit	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00263	gene	gene2925	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2927
AHA_2928	AHA_2928	trpA	trpA	3289570	3290376	+	tryptophan synthase%2C alpha subunit	identified by match to protein family HMM PF00290%3B match to protein family HMM TIGR00262	gene	gene2926	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2928
AHA_2929	AHA_2929		AHA_2929	3291480	3292478	+	patatin	identified by match to protein family HMM PF01734	gene	gene2927	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2929
AHA_2930	AHA_2930		AHA_2930	3293338	3293943	-	conserved hypothetical protein	identified by match to protein family HMM PF04307	gene	gene2928	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2930
AHA_2931	AHA_2931		AHA_2931	3294085	3294327	+	conserved hypothetical protein		gene	gene2929	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2931
AHA_2932	AHA_2932		AHA_2932	3294525	3295067	+	conserved hypothetical protein		gene	gene2930	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2932
AHA_2933	AHA_2933		AHA_2933	3295137	3295580	-	inhibitor of vertebrate lysozyme		gene	gene2931	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2933
AHA_2934	AHA_2934		AHA_2934	3295763	3296974	-	nucleoside permease NupC	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804	gene	gene2932	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2934
AHA_2935	AHA_2935		AHA_2935	3297650	3298612	+	transporter	identified by match to protein family HMM PF02698%3B match to protein family HMM PF07719	gene	gene2933	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2935
AHA_2936	AHA_2936	tauA	tauA	3298985	3299959	+	taurine ABC transporter%2C periplasmic binding protein	identified by match to protein family HMM PF04069%3B match to protein family HMM TIGR01729	gene	gene2934	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2936
AHA_2937	AHA_2937		AHA_2937	3299983	3300750	+	taurine ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene2935	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2937
AHA_2938	AHA_2938	tauC	tauC	3300747	3301577	+	taurine uptake ABC transporter%2C permease protein	identified by similarity to Q47539%3B match to protein family HMM PF00528	gene	gene2936	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2938
AHA_2939	AHA_2939		AHA_2939	3301574	3302428	+	alpha-ketoglutarate-dependent taurine dioxygenase	identified by match to protein family HMM PF02668	gene	gene2937	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2939
AHA_2940	AHA_2940		AHA_2940	3302680	3304344	+	secretory tripeptidyl aminopeptidase%2C putative	identified by match to protein family HMM PF00561	gene	gene2938	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2940
AHA_2941	AHA_2941		AHA_2941	3304433	3305794	-	inner membrane transport protein YajR	identified by match to protein family HMM PF07690	gene	gene2939	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2941
AHA_2942	AHA_2942	cyoE	cyoE	3305984	3306880	-	protoheme IX farnesyltransferase	identified by match to protein family HMM PF01040%3B match to protein family HMM TIGR01473	gene	gene2940	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2942
AHA_2943	AHA_2943		AHA_2943	3306892	3307224	-	cytochrome O ubiquinol oxidase protein CyoD	identified by match to protein family HMM PF03626%3B match to protein family HMM TIGR02847	gene	gene2941	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2943
AHA_2944	AHA_2944	cyoC	cyoC	3307225	3307836	-	cytochrome o ubiquinol oxidase%2C subunit III	identified by match to protein family HMM PF00510%3B match to protein family HMM TIGR02842	gene	gene2942	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2944
AHA_2945	AHA_2945		AHA_2945	3307841	3309817	-	ubiquinol oxidase polypeptide I	identified by match to protein family HMM PF00115%3B match to protein family HMM TIGR02843	gene	gene2943	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2945
AHA_2946	AHA_2946		AHA_2946	3309817	3310860	-	ubiquinol oxidase polypeptide II	identified by match to protein family HMM PF00116%3B match to protein family HMM PF06481%3B match to protein family HMM TIGR01433	gene	gene2944	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2946
AHA_2947	AHA_2947		AHA_2947	3311497	3313422	+	twin-arginine translocation pathway signal	identified by match to protein family HMM TIGR01409	gene	gene2945	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2947
AHA_2948	AHA_2948		AHA_2948	3313419	3314618	+	cytochrome c family protein		gene	gene2946	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2948
AHA_2949	AHA_2949		AHA_2949	3314681	3315001	-	conserved hypothetical protein		gene	gene2947	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2949
AHA_2950	AHA_2950		AHA_2950	3315138	3316106	-	inosine-uridine preferring nucleoside hydrolase superfamily	identified by match to protein family HMM PF01156	gene	gene2948	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2950
AHA_2951	AHA_2951		AHA_2951	3316318	3316947	+	conserved hypothetical protein	identified by match to protein family HMM PF05962	gene	gene2949	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2951
AHA_2952	AHA_2952		AHA_2952	3316973	3317176	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2950	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2952
AHA_2953	AHA_2953	azu	azu	3317368	3317808	-	azurin	identified by match to protein family HMM PF00127%3B match to protein family HMM TIGR02695	gene	gene2951	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2953
AHA_2954	AHA_2954		AHA_2954	3318138	3319172	+	thiamine biosynthesis lipoprotein ApbE	identified by match to protein family HMM PF02424	gene	gene2952	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2954
AHA_2955	AHA_2955		AHA_2955	3319283	3320488	-	major facilitator family transporter	identified by match to protein family HMM PF07690	gene	gene2953	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2955
AHA_2956	AHA_2956		AHA_2956	3320617	3322461	+	response regulator with TPR repeat%2C putative	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00515%3B match to protein family HMM PF07719%3B match to protein family HMM PF07721	gene	gene2954	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2956
AHA_2957	AHA_2957		AHA_2957	3322516	3323478	+	putative potassium channel protein	identified by match to protein family HMM PF00805%3B match to protein family HMM PF07885	gene	gene2955	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2957
AHA_2958	AHA_2958	xth	xth	3323590	3324396	+	exodeoxyribonuclease III	identified by similarity to SP:P09030%3B match to protein family HMM PF03372%3B match to protein family HMM TIGR00195%3B match to protein family HMM TIGR00633	gene	gene2956	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2958
AHA_2959	AHA_2959		AHA_2959	3324735	3325934	+	acriflavin resistance protein A	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene2957	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2959
AHA_2960	AHA_2960		AHA_2960	3325944	3329072	+	RND transporter%2C hydrophobe/amphiphile efflux-1 (HAE1) family	identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00915	gene	gene2958	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2960
AHA_2961	AHA_2961		AHA_2961	3329088	3329684	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2959	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2961
AHA_2962	AHA_2962		AHA_2962	3329986	3331485	+	copper/silver resistance periplasmic protein	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene2960	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2962
AHA_2963	AHA_2963		AHA_2963	3331559	3334687	+	cation efflux system protein CusA	identified by match to protein family HMM PF00873%3B match to protein family HMM TIGR00914	gene	gene2961	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2963
AHA_2964	AHA_2964		AHA_2964	3334692	3335108	+	secretion protein HlyD		gene	gene2962	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2964
AHA_2965	AHA_2965		AHA_2965	3335215	3336003	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2963	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2965
AHA_2966	AHA_2966		AHA_2966	3336231	3337925	-	decarboxylase%2C group II	identified by match to protein family HMM PF00282	gene	gene2964	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2966
AHA_2967	AHA_2967		AHA_2967	3338114	3339130	-	lipoate-protein ligase A	identified by match to protein family HMM PF03099%3B match to protein family HMM TIGR00545	gene	gene2965	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2967
AHA_2968	AHA_2968		AHA_2968	3339575	3342004	+	PAS:GGDEF domain protein	identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01814%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254%3B match to protein family HMM TIGR02481	gene	gene2966	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2968
AHA_2969	AHA_2969		AHA_2969	3342065	3345274	-	transporter%2C AcrB/D/F family	identified by match to protein family HMM PF00873	gene	gene2967	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2969
AHA_2970	AHA_2970		AHA_2970	3345267	3346304	-	AcrA/AcrE family protein	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene2968	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2970
AHA_2971	AHA_2971		AHA_2971	3346341	3346796	-	YeeE/YedE family protein	identified by match to protein family HMM PF04143	gene	gene2969	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2971
AHA_2972	AHA_2972		AHA_2972	3346801	3347211	-	YeeE/YedE	identified by match to protein family HMM PF04143	gene	gene2970	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2972
AHA_2973	AHA_2973		AHA_2973	3347211	3347528	-	nodulation protein NolR	identified by match to protein family HMM PF01022	gene	gene2971	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2973
AHA_2974	AHA_2974		AHA_2974	3347616	3347801	+	inner membrane protein YgaP		gene	gene2972	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2974
AHA_2975	AHA_2975		AHA_2975	3348219	3348593	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2973	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2975
AHA_2976	AHA_2976		AHA_2976	3348797	3349525	+	putative transporter%2C putative Mg2+ transporter-C (MgtC) family	identified by match to protein family HMM PF02308	gene	gene2974	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2976
AHA_2977	AHA_2977		AHA_2977	3349602	3350627	-	fructose repressor	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene2975	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2977
AHA_2978	AHA_2978		AHA_2978	3350655	3352070	-	sucrose-6-phosphate hydrolase	identified by match to protein family HMM PF00251%3B match to protein family HMM TIGR01322	gene	gene2976	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2978
AHA_2979	AHA_2979		AHA_2979	3352070	3353434	-	pts system%2C sucrose-specific iibc component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR00852%3B match to protein family HMM TIGR01996	gene	gene2977	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2979
AHA_2980	AHA_2980		AHA_2980	3353518	3354474	-	fructokinase	identified by match to protein family HMM PF00294	gene	gene2978	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2980
AHA_2981	AHA_2981		AHA_2981	3354590	3356080	-	sucrose porin	identified by match to protein family HMM PF02264	gene	gene2979	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2981
AHA_2982	AHA_2982	dnaJ	dnaJ	3356344	3357486	-	chaperone protein DnaJ	identified by similarity to SP:P08622%3B match to protein family HMM PF00226%3B match to protein family HMM PF00684%3B match to protein family HMM PF01556%3B match to protein family HMM TIGR02349	gene	gene2980	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2982
AHA_2983	AHA_2983	dnaK	dnaK	3357741	3359669	-	chaperone protein DnaK	identified by match to protein family HMM PF00012%3B match to protein family HMM TIGR02350	gene	gene2981	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2983
AHA_2984	AHA_2984	grpE	grpE	3359973	3360548	-	co-chaperone GrpE	identified by similarity to SP:P09372%3B match to protein family HMM PF01025	gene	gene2982	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2984
AHA_2985	AHA_2985		AHA_2985	3360638	3361702	+	probable inorganic polyphosphate/ATP-NAD kinase (Poly(P)/ATP NAD kinase)	identified by match to protein family HMM PF01513	gene	gene2983	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2985
AHA_2986	AHA_2986	recN	recN	3361814	3363478	+	DNA repair protein RecN	identified by match to protein family HMM PF02463%3B match to protein family HMM TIGR00634	gene	gene2984	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2986
AHA_2987	AHA_2987		AHA_2987	3364060	3364953	+	probable manganese-dependent inorganic pyrophosphatase	identified by match to protein family HMM PF01368	gene	gene2985	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2987
AHA_2988	AHA_2988		AHA_2988	3365314	3365754	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2986	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2988
AHA_2989	AHA_2989		AHA_2989	3365969	3367132	+	macrolide-specific efflux protein MacA	identified by match to protein family HMM PF00529%3B match to protein family HMM TIGR01730	gene	gene2987	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2989
AHA_2990	AHA_2990		AHA_2990	3367129	3369072	+	macrolide-specific ABC-type efflux carrier	identified by match to protein family HMM PF00005%3B match to protein family HMM PF02687	gene	gene2988	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2990
AHA_2991	AHA_2991		AHA_2991	3369069	3370442	+	outer membrane efflux protein	identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01845	gene	gene2989	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2991
AHA_2992	AHA_2992		AHA_2992	3370614	3371420	+	vibriobactin utilization protein ViuB	identified by match to protein family HMM PF04954%3B match to protein family HMM PF08021	gene	gene2990	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2992
AHA_2993	AHA_2993		AHA_2993	3371634	3372788	+	phospho-2-dehydro-3-deoxyheptonate aldolase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR00034	gene	gene2991	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2993
AHA_2994	AHA_2994		AHA_2994	3373371	3373781	-	DNA-binding protein StpA	identified by match to protein family HMM PF00816	gene	gene2992	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2994
AHA_2995	AHA_2995		AHA_2995	3374198	3374656	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene2993	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2995
AHA_2996	AHA_2996		AHA_2996	3374807	3375307	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene2994	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2996
AHA_2997	AHA_2997		AHA_2997	3375377	3375718	-	inner membrane protein YhaI	identified by match to protein family HMM PF05656	gene	gene2995	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2997
AHA_2998	AHA_2998		AHA_2998	3376442	3377380	+	transcriptional regulatory protein%2C C terminal	identified by match to protein family HMM PF00486	gene	gene2996	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2998
AHA_2999	AHA_2999		AHA_2999	3377952	3379229	-	FAD dependent oxidoreductase	identified by match to protein family HMM PF01266	gene	gene2997	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_2999
AHA_3000	AHA_3000		AHA_3000	3379281	3379892	-	transcriptional regulator%2C Cro/CI family	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene2998	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3000
AHA_3001	AHA_3001		AHA_3001	3380203	3381666	+	succinate-semialdehyde dehydrogenase (NADP+)	identified by match to protein family HMM PF00171%3B match to protein family HMM TIGR01780	gene	gene2999	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3001
AHA_3002	AHA_3002	gabT	gabT	3381816	3383105	+	4-aminobutyrate transaminase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM TIGR00700	gene	gene3000	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3002
AHA_3003	AHA_3003		AHA_3003	3383463	3384806	+	amino acid permease	identified by match to protein family HMM PF00324	gene	gene3001	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3003
AHA_3004	AHA_3004		AHA_3004	3385313	3386656	+	amino acid permease	identified by match to protein family HMM PF00324	gene	gene3002	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3004
AHA_3005	AHA_3005		AHA_3005	3386755	3387264	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3003	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3005
AHA_3006	AHA_3006		AHA_3006	3387384	3388538	+	sodium dependent phosphate pump	identified by match to protein family HMM PF02690	gene	gene3004	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3006
AHA_3007	AHA_3007		AHA_3007	3388706	3389176	+	fkbp-type peptidyl-prolyl cis-trans isomerase fkpa	identified by match to protein family HMM PF00254	gene	gene3005	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3007
AHA_3008	AHA_3008		AHA_3008	3389563	3390330	+	extradiol ring-cleavage dioxygenase%2C class III enzyme%2C subunit B	identified by match to protein family HMM PF02900	gene	gene3006	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3008
AHA_3009	AHA_3009		AHA_3009	3390494	3393763	+	virulence sensor protein BvgS	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00989%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR00229	gene	gene3007	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3009
AHA_3010	AHA_3010	deoD-1	deoD-1	3394220	3394921	-	purine nucleoside phosphorylase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR00107	gene	gene3008	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3010
AHA_3011	AHA_3011		AHA_3011	3395208	3395618	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3009	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3011
AHA_3012	AHA_3012		AHA_3012	3396182	3397264	+	region found in RelA / SpoT proteins	identified by match to protein family HMM PF04607	gene	gene3010	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3012
AHA_3013	AHA_3013		AHA_3013	3397606	3399177	-	ATPase component of ABC transporters with duplicated ATPase domains	identified by match to protein family HMM PF00005	gene	gene3011	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3013
AHA_3014	AHA_3014		AHA_3014	3399584	3400486	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3012	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3014
AHA_3015	AHA_3015		AHA_3015	3401253	3403058	-	exoenzymes regulatory protein AepA	identified by match to protein family HMM PF07969	gene	gene3013	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3015
AHA_3016	AHA_3016	thrC	thrC	3403482	3404756	-	threonine synthase	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR00260	gene	gene3014	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3016
AHA_3017	AHA_3017	thrB	thrB	3404753	3405733	-	homoserine kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00191	gene	gene3015	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3017
AHA_3018	AHA_3018		AHA_3018	3405736	3408195	-	bifunctional aspartokinase/homoserine dehydrogenase I (AKI-HDI)	identified by match to protein family HMM PF00696%3B match to protein family HMM PF00742%3B match to protein family HMM PF01842%3B match to protein family HMM PF03447%3B match to protein family HMM TIGR00657	gene	gene3016	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3018
AHA_3019	AHA_3019		AHA_3019	3408319	3408402	-	thr operon leader peptide		gene	gene3017	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3019
AHA_3020	AHA_3020		AHA_3020	3408456	3409148	-	RNA methyltransferase%2C TrmH family%2C group 1	identified by match to protein family HMM PF00588%3B match to protein family HMM TIGR00050	gene	gene3018	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3020
AHA_3021	AHA_3021	aceK	aceK	3409344	3411071	+	isocitrate dehydrogenase kinase/phosphatase	identified by match to protein family HMM PF06315	gene	gene3019	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3021
AHA_3022	AHA_3022		AHA_3022	3411187	3411534	-	domain of unknown function (306) superfamily	identified by match to protein family HMM PF03724	gene	gene3020	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3022
AHA_3023	AHA_3023		AHA_3023	3411758	3412234	+	conserved hypothetical protein		gene	gene3021	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3023
AHA_3024	AHA_3024	rraA-1	rraA-1	3412240	3412719	-	regulator of ribonuclease activity A	identified by match to protein family HMM PF03737%3B match to protein family HMM TIGR01935	gene	gene3022	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3024
AHA_3025	AHA_3025		AHA_3025	3412762	3413178	-	conserved hypothetical protein		gene	gene3023	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3025
AHA_3026	AHA_3026	arcA-1	arcA-1	3413555	3414274	+	aerobic respiration control protein ArcA	identified by similarity to SP:P0A9Q1%3B match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene3024	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3026
AHA_3027	AHA_3027		AHA_3027	3414420	3414494	-	tRNA-Gly		tRNA	gene3025	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3027
AHA_3028	AHA_3028		AHA_3028	3414589	3414662	-	tRNA-Gly		tRNA	gene3026	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3028
AHA_3029	AHA_3029		AHA_3029	3414864	3416633	+	ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydD	identified by similarity to SP:P29018%3B match to protein family HMM PF00005%3B match to protein family HMM PF00664%3B match to protein family HMM TIGR02857	gene	gene3027	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3029
AHA_3030	AHA_3030		AHA_3030	3416626	3418371	+	ABC transporter%2C CydDC cysteine exporter (CydDC-E) family%2C permease/ATP-binding protein CydC	identified by similarity to SP:P23886%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02868	gene	gene3028	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3030
AHA_3031	AHA_3031		AHA_3031	3418625	3418996	+	exopolysaccharide synthesis regulator RcsF		gene	gene3029	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3031
AHA_3032	AHA_3032		AHA_3032	3419019	3419411	+	conserved hypothetical protein		gene	gene3030	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3032
AHA_3033	AHA_3033		AHA_3033	3419482	3420462	-	isoflavone reductase	identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993	gene	gene3031	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3033
AHA_3034	AHA_3034		AHA_3034	3420710	3421417	+	conserved hypothetical protein%2C putative	identified by match to protein family HMM PF01980%3B match to protein family HMM TIGR00104	gene	gene3032	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3034
AHA_3035	AHA_3035		AHA_3035	3421481	3422602	-	3-oxoacyl-[acyl-carrier-protein] synthase III	identified by match to protein family HMM PF00109	gene	gene3033	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3035
AHA_3036	AHA_3036		AHA_3036	3422658	3423821	-	conserved hypothetical protein		gene	gene3034	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3036
AHA_3037	AHA_3037		AHA_3037	3423825	3424667	-	AAA ATPase	identified by match to protein family HMM PF00004%3B match to protein family HMM PF07728	gene	gene3035	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3037
AHA_3038	AHA_3038	cysK	cysK	3424835	3425803	+	cysteine synthase A	identified by match to protein family HMM PF00291%3B match to protein family HMM TIGR01136%3B match to protein family HMM TIGR01139	gene	gene3036	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3038
AHA_3039	AHA_3039	ptsH	ptsH	3426246	3426503	+	phosphocarrier protein PtsH	identified by similarity to SP:P16481%3B match to protein family HMM PF00381%3B match to protein family HMM TIGR01003	gene	gene3037	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3039
AHA_3040	AHA_3040	ptsI-2	ptsI-2	3426548	3428275	+	phosphoenolpyruvate-protein phosphotransferase	identified by similarity to SP:P08839%3B match to protein family HMM PF00391%3B match to protein family HMM PF02896%3B match to protein family HMM PF05524%3B match to protein family HMM TIGR01417	gene	gene3038	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3040
AHA_3041	AHA_3041	crr	crr	3428319	3428828	+	PTS system%2C glucose-specific IIA component	identified by similarity to SP:P69783%3B match to protein family HMM PF00358%3B match to protein family HMM TIGR00830	gene	gene3039	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3041
AHA_3042	AHA_3042		AHA_3042	3428907	3429965	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3040	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3042
AHA_3043	AHA_3043		AHA_3043	3429931	3430749	-	conserved hypothetical protein		gene	gene3041	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3043
AHA_3044	AHA_3044		AHA_3044	3430969	3431514	+	cytochrome b561	identified by match to protein family HMM PF01292	gene	gene3042	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3044
AHA_3045	AHA_3045		AHA_3045	3431598	3435353	-	exonuclease SbcC	identified by match to protein family HMM PF02463	gene	gene3043	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3045
AHA_3046	AHA_3046		AHA_3046	3435436	3436662	-	nuclease sbcCD subunit D	identified by match to protein family HMM PF00149%3B match to protein family HMM TIGR00619	gene	gene3044	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3046
AHA_3047	AHA_3047		AHA_3047	3436764	3437192	-	acetyltransferase YjaB	identified by match to protein family HMM PF00583	gene	gene3045	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3047
AHA_3048	AHA_3048		AHA_3048	3437373	3438284	+	recombination associated protein RdgC	identified by match to protein family HMM PF04381	gene	gene3046	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3048
AHA_3049	AHA_3049		AHA_3049	3438464	3440242	+	gamma-glutamyltranspeptidase	identified by match to protein family HMM PF01019	gene	gene3047	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3049
AHA_3050	AHA_3050		AHA_3050	3440629	3442272	+	transporter%2C monovalent cation:proton antiporter family	identified by match to protein family HMM PF00999%3B match to protein family HMM PF02254	gene	gene3048	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3050
AHA_3051	AHA_3051		AHA_3051	3442315	3443853	+	bacterial leucyl aminopeptidase	identified by match to protein family HMM PF01546%3B match to protein family HMM PF04389	gene	gene3049	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3051
AHA_3052	AHA_3052	pyk-3	pyk-3	3444421	3445869	+	pyruvate kinase	identified by match to protein family HMM PF00224%3B match to protein family HMM PF02887%3B match to protein family HMM TIGR01064	gene	gene3050	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3052
AHA_3053	AHA_3053	kefA	kefA	3446019	3449342	+	potassium efflux system KefA	identified by similarity to SP:P77338%3B match to protein family HMM PF00924	gene	gene3051	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3053
AHA_3054	AHA_3054		AHA_3054	3449552	3450385	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3052	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3054
AHA_3055	AHA_3055		AHA_3055	3450450	3451457	+	6-phosphogluconolactonase		gene	gene3053	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3055
AHA_3056	AHA_3056	uraA	uraA	3451559	3452854	-	uracil permease	identified by match to protein family HMM PF00860%3B match to protein family HMM TIGR00801	gene	gene3054	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3056
AHA_3057	AHA_3057		AHA_3057	3453103	3454422	+	intein-containing protein	identified by match to protein family HMM TIGR01443	gene	gene3055	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3057
AHA_3058	AHA_3058		AHA_3058	3454419	3454760	+	17 kDa antigen		gene	gene3056	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3058
AHA_3059	AHA_3059		AHA_3059	3454830	3456545	-	malate oxidoreductase	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene3057	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3059
AHA_3060	AHA_3060		AHA_3060	3456786	3457916	+	two-component hybrid sensor and regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene3058	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3060
AHA_3061	AHA_3061		AHA_3061	3457985	3458956	-	formate dehydrogenase%2C cytochrome b556 subunit	identified by match to protein family HMM TIGR01583	gene	gene3059	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3061
AHA_3062	AHA_3062		AHA_3062	3458953	3459576	-	formate dehydrogenase iron-sulfur subunit	identified by match to protein family HMM PF00037	gene	gene3060	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3062
AHA_3063	AHA_3063		AHA_3063	3459581	3462481	-	formate dehydrogenase	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04879%3B match to protein family HMM TIGR01409	gene	gene3061	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3063
AHA_3064	AHA_3064		AHA_3064	3462505	3462708	-	Tat (twin-arginine translocation) pathway signal sequence domain protein	identified by match to protein family HMM TIGR01409%3B match to protein family HMM TIGR02811	gene	gene3062	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3064
AHA_3065	AHA_3065		AHA_3065	3462778	3463398	-	cytoplasmic 'private chaperone' of TorD family%2C probably for assembly of Mo-cofactor in formate dehydrogenase	identified by match to protein family HMM PF06192	gene	gene3063	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3065
AHA_3066	AHA_3066		AHA_3066	3463409	3465139	-	iron-sulfur cluster-binding protein	identified by match to protein family HMM PF00037	gene	gene3064	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3066
AHA_3067	AHA_3067		AHA_3067	3465244	3465921	-	conserved hypothetical protein		gene	gene3065	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3067
AHA_3068	AHA_3068		AHA_3068	3465839	3466429	-	conserved hypothetical protein		gene	gene3066	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3068
AHA_3069	AHA_3069		AHA_3069	3466704	3467702	-	type I restriction enzyme r protein n terminus (hsdr_n)	identified by match to protein family HMM PF04313	gene	gene3067	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3069
AHA_3070	AHA_3070		AHA_3070	3467969	3468826	+	formate dehydrogenase accessory protein	identified by match to protein family HMM PF02634	gene	gene3068	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3070
AHA_3071	AHA_3071		AHA_3071	3468922	3469782	+	conserved hypothetical protein		gene	gene3069	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3071
AHA_3072	AHA_3072	atoS	atoS	3470007	3472100	-	sensory box sensor histidine kinase AtoS	identified by similarity to SP:Q06067%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3070	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3072
AHA_3073	AHA_3073		AHA_3073	3472132	3473487	-	acetoacetate metabolism regulatory protein AtoC	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954%3B match to protein family HMM PF07728	gene	gene3071	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3073
AHA_3074	AHA_3074		AHA_3074	3473736	3474578	+	extracellular tungstate binding protein		gene	gene3072	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3074
AHA_3075	AHA_3075		AHA_3075	3474646	3475347	+	molybdenum transport system permease protein ModB	identified by match to protein family HMM PF00528	gene	gene3073	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3075
AHA_3076	AHA_3076		AHA_3076	3475463	3476158	+	molybdenum transport ATP-binding protein ModC	identified by match to protein family HMM PF00005	gene	gene3074	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3076
AHA_3077	AHA_3077	mobA	mobA	3476130	3476768	+	molybdopterin-guanine dinucleotide biosynthesis protein A	identified by similarity to SP:P32173%3B match to protein family HMM TIGR02665	gene	gene3075	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3077
AHA_3078	AHA_3078		AHA_3078	3476765	3478510	+	molybdopterin biosynthesis MoeA protein	identified by match to protein family HMM PF00994%3B match to protein family HMM PF03205%3B match to protein family HMM PF03453%3B match to protein family HMM PF03454%3B match to protein family HMM TIGR00176%3B match to protein family HMM TIGR00177	gene	gene3076	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3078
AHA_3079	AHA_3079		AHA_3079	3478574	3479632	+	inner membrane protein YeeA		gene	gene3077	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3079
AHA_3080	AHA_3080		AHA_3080	3479703	3481076	-	metal-dependent phosphohydrolase%2C HD subdomain	identified by match to protein family HMM PF01966	gene	gene3078	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3080
AHA_3081	AHA_3081		AHA_3081	3481164	3481784	-	ABC-type multidrug transport system%2C ATPase and permease component		gene	gene3079	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3081
AHA_3082	AHA_3082		AHA_3082	3481913	3483181	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229	gene	gene3080	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3082
AHA_3083	AHA_3083		AHA_3083	3483402	3483863	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3081	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3083
AHA_3084	AHA_3084		AHA_3084	3483942	3484385	-	DoxX	identified by match to protein family HMM PF07681	gene	gene3082	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3084
AHA_3085	AHA_3085		AHA_3085	3484391	3485146	-	conserved hypothetical protein		gene	gene3083	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3085
AHA_3086	AHA_3086		AHA_3086	3485139	3485987	-	conserved hypothetical protein	identified by match to protein family HMM PF05114	gene	gene3084	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3086
AHA_3087	AHA_3087		AHA_3087	3486059	3486322	-	signal peptide protein		gene	gene3085	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3087
AHA_3088	AHA_3088		AHA_3088	3486681	3486881	-	conserved hypothetical protein	identified by similarity to GB:CAH22153.1	gene	gene3086	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3088
AHA_3089	AHA_3089		AHA_3089	3487096	3487389	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3087	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3089
AHA_3090	AHA_3090		AHA_3090	3487450	3487523	-	tRNA-Cys		tRNA	gene3088	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3090
AHA_3091	AHA_3091		AHA_3091	3487579	3487654	-	tRNA-Gly		tRNA	gene3089	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3091
AHA_3092	AHA_3092		AHA_3092	3487862	3491341	+	sensory box sensor histidine kinase/response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3090	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3092
AHA_3093	AHA_3093		AHA_3093	3491744	3493429	+	peptide ABC transporter%2C periplasmic peptide-binding protein	identified by match to protein family HMM PF00496	gene	gene3091	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3093
AHA_3094	AHA_3094		AHA_3094	3493549	3494532	+	peptide ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3092	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3094
AHA_3095	AHA_3095		AHA_3095	3494534	3495454	+	chitooligosaccharide transport system permease protein	identified by match to protein family HMM PF00528	gene	gene3093	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3095
AHA_3096	AHA_3096		AHA_3096	3495451	3496473	+	peptide ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene3094	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3096
AHA_3097	AHA_3097		AHA_3097	3496485	3497477	+	oligopeptide transport ATP-binding protein AppF	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene3095	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3097
AHA_3098	AHA_3098		AHA_3098	3497580	3499313	+	endochitinase	identified by match to protein family HMM PF00759	gene	gene3096	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3098
AHA_3099	AHA_3099		AHA_3099	3499306	3500178	+	N-acetylglucosamine kinase	identified by match to protein family HMM PF01869	gene	gene3097	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3099
AHA_3100	AHA_3100		AHA_3100	3500339	3502207	+	beta-hexosaminidase	identified by match to protein family HMM PF00728	gene	gene3098	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3100
AHA_3101	AHA_3101		AHA_3101	3502424	3503977	+	aerotaxis receptor Aer	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00989%3B match to protein family HMM TIGR00229	gene	gene3099	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3101
AHA_3102	AHA_3102		AHA_3102	3504045	3504401	+	putative methylated-DNA binding protein	identified by match to protein family HMM PF01035	gene	gene3100	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3102
AHA_3103	AHA_3103		AHA_3103	3504417	3504698	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3101	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3103
AHA_3104	AHA_3104	topA	topA	3504699	3507320	-	DNA topoisomerase I	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01396%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01051	gene	gene3102	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3104
AHA_3105	AHA_3105	astB	astB	3507682	3509019	+	succinylarginine dihydrolase	identified by match to protein family HMM PF04996	gene	gene3103	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3105
AHA_3106	AHA_3106	sohB	sohB	3509106	3510113	-	peptidase%2C S49 (protease IV) family	identified by similarity to SP:P24213%3B match to protein family HMM PF01343	gene	gene3104	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3106
AHA_3107	AHA_3107		AHA_3107	3510347	3511102	+	oxidoreductase%2C short-chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene3105	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3107
AHA_3108	AHA_3108		AHA_3108	3511202	3512086	+	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3106	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3108
AHA_3109	AHA_3109		AHA_3109	3512153	3513325	-	sugar efflux transporter	identified by match to protein family HMM PF07690	gene	gene3107	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3109
AHA_3110	AHA_3110		AHA_3110	3513487	3514623	+	putative aminotransferase B	identified by match to protein family HMM PF00155	gene	gene3108	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3110
AHA_3111	AHA_3111		AHA_3111	3514517	3516274	+	immunogenic protein	identified by match to protein family HMM TIGR02122	gene	gene3109	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3111
AHA_3112	AHA_3112		AHA_3112	3516345	3517253	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3110	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3112
AHA_3113	AHA_3113	purA	purA	3517441	3518697	+	adenylosuccinate synthetase	identified by match to protein family HMM PF00709	gene	gene3111	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3113
AHA_3114	AHA_3114		AHA_3114	3518912	3519448	+	putative phosphatidylethanolamine-binding protein	identified by match to protein family HMM PF01161%3B match to protein family HMM TIGR00481	gene	gene3112	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3114
AHA_3115	AHA_3115		AHA_3115	3519460	3520272	+	transcriptional regulator%2C AraC/XylS family	identified by match to protein family HMM PF00165	gene	gene3113	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3115
AHA_3116	AHA_3116		AHA_3116	3520457	3522937	+	conserved hypothetical protein		gene	gene3114	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3116
AHA_3117	AHA_3117	tyrS-2	tyrS-2	3523016	3524215	-	tyrosyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00234	gene	gene3115	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3117
AHA_3118	AHA_3118		AHA_3118	3524330	3525640	+	cell wall endopeptidase%2C family M23/M37	identified by match to protein family HMM PF01551	gene	gene3116	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3118
AHA_3119	AHA_3119		AHA_3119	3525781	3526884	+	conserved hypothetical protein	identified by match to protein family HMM PF03702	gene	gene3117	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3119
AHA_3120	AHA_3120	hchA	hchA	3526974	3527837	-	chaperone protein HchA	identified by match to protein family HMM PF01965	gene	gene3118	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3120
AHA_3121	AHA_3121		AHA_3121	3527987	3528094	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3119	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3121
AHA_3122	AHA_3122		AHA_3122	3528663	3529928	+	hypothetical endoribonuclease L-PSP	identified by match to protein family HMM PF01042	gene	gene3120	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3122
AHA_3123	AHA_3123	tkt	tkt	3530898	3532889	-	transketolase	identified by match to protein family HMM PF00456%3B match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00232	gene	gene3121	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3123
AHA_3124	AHA_3124	metK	metK	3533232	3534383	+	S-adenosylmethionine synthetase	identified by match to protein family HMM PF00438%3B match to protein family HMM PF02772%3B match to protein family HMM PF02773%3B match to protein family HMM TIGR01034	gene	gene3122	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3124
AHA_3125	AHA_3125	sprT	sprT	3534453	3534986	+	SprT protein	identified by match to protein family HMM PF03926	gene	gene3123	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3125
AHA_3126	AHA_3126		AHA_3126	3534995	3535747	+	extracellular deoxyribonuclease	identified by match to protein family HMM PF04231	gene	gene3124	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3126
AHA_3127	AHA_3127		AHA_3127	3535811	3536542	+	conserved hypothetical protein	identified by match to protein family HMM PF04452%3B match to protein family HMM TIGR00046	gene	gene3125	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3127
AHA_3128	AHA_3128	gshB	gshB	3536657	3537610	+	glutathione synthase	identified by match to protein family HMM PF02951%3B match to protein family HMM PF02955%3B match to protein family HMM TIGR01380	gene	gene3126	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3128
AHA_3129	AHA_3129		AHA_3129	3537722	3539347	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3127	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3129
AHA_3130	AHA_3130		AHA_3130	3539433	3540020	+	conserved hypothetical protein	identified by match to protein family HMM PF02622	gene	gene3128	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3130
AHA_3131	AHA_3131		AHA_3131	3540067	3540489	+	conserved hypothetical protein	identified by match to protein family HMM PF03652%3B match to protein family HMM TIGR00250	gene	gene3129	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3131
AHA_3132	AHA_3132		AHA_3132	3540536	3542041	-	inner membrane transporter YhiP	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene3130	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3132
AHA_3133	AHA_3133		AHA_3133	3542593	3543564	-	HTH-type transcriptional regulator YidZ	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3131	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3133
AHA_3134	AHA_3134		AHA_3134	3543741	3544523	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3132	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3134
AHA_3135	AHA_3135		AHA_3135	3545770	3547041	-	beta-lactamase	identified by match to protein family HMM PF00144	gene	gene3133	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3135
AHA_3136	AHA_3136		AHA_3136	3547109	3548029	+	MoxR protein	identified by match to protein family HMM PF07726%3B match to protein family HMM PF07728	gene	gene3134	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3136
AHA_3137	AHA_3137		AHA_3137	3548029	3549015	+	conserved hypothetical protein	identified by similarity to GB:BAD80406.1%3B match to protein family HMM PF01882	gene	gene3135	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3137
AHA_3138	AHA_3138		AHA_3138	3549002	3550975	+	membrane protein%2C putative	identified by match to protein family HMM PF01841	gene	gene3136	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3138
AHA_3139	AHA_3139	agcS-2	agcS-2	3551218	3552660	-	amino acid carrier protein	identified by match to protein family HMM PF01235%3B match to protein family HMM TIGR00835	gene	gene3137	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3139
AHA_3140	AHA_3140	tal	tal	3553392	3554354	+	transaldolase	identified by match to protein family HMM PF00923%3B match to protein family HMM TIGR00874	gene	gene3138	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3140
AHA_3141	AHA_3141		AHA_3141	3554748	3555296	-	hemerythrin HHE cation binding domain subfamily%2C putative	identified by match to protein family HMM PF01814	gene	gene3139	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3141
AHA_3142	AHA_3142	ung	ung	3555454	3556122	-	uracil-DNA glycosylase	identified by similarity to SP:P12295%3B match to protein family HMM PF03167%3B match to protein family HMM TIGR00628	gene	gene3140	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3142
AHA_3143	AHA_3143		AHA_3143	3556958	3557338	+	autonomous glycyl radical cofactor	identified by match to protein family HMM PF01228	gene	gene3141	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3143
AHA_3144	AHA_3144		AHA_3144	3557469	3558749	-	C4-dicarboxylate transport protein	identified by match to protein family HMM PF00375	gene	gene3142	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3144
AHA_3145	AHA_3145	kdsA	kdsA	3559056	3559910	-	3-deoxy-8-phosphooctulonate synthase	identified by match to protein family HMM PF00793%3B match to protein family HMM TIGR01362	gene	gene3143	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3145
AHA_3146	AHA_3146		AHA_3146	3560086	3560886	-	conserved hypothetical protein		gene	gene3144	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3146
AHA_3147	AHA_3147		AHA_3147	3560898	3561281	-	invasion gene expression up-regulator%2C SirB superfamily	identified by match to protein family HMM PF04247	gene	gene3145	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3147
AHA_3148	AHA_3148		AHA_3148	3561325	3562173	-	protein methyltransferase HemK	identified by match to protein family HMM PF05175%3B match to protein family HMM TIGR00536	gene	gene3146	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3148
AHA_3149	AHA_3149	prfA	prfA	3562173	3563261	-	peptide chain release factor 1	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00019	gene	gene3147	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3149
AHA_3150	AHA_3150	hemA	hemA	3563313	3564650	-	glutamyl-tRNA reductase	identified by match to protein family HMM PF00745%3B match to protein family HMM PF01488%3B match to protein family HMM PF05201%3B match to protein family HMM TIGR01035	gene	gene3148	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3150
AHA_3151	AHA_3151	lolB	lolB	3564694	3565278	+	outer membrane lipoprotein LolB	identified by match to protein family HMM PF03550%3B match to protein family HMM TIGR00548	gene	gene3149	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3151
AHA_3152	AHA_3152	ispE	ispE	3565305	3566174	+	4-diphosphocytidyl-2C-methyl-D-erythritol kinase	identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00154	gene	gene3150	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3152
AHA_3153	AHA_3153		AHA_3153	3566154	3566228	+	tRNA-Gln		tRNA	gene3151	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3153
AHA_3154	AHA_3154		AHA_3154	3566469	3567485	+	ribose-phosphate pyrophosphokinase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01251	gene	gene3152	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3154
AHA_3155	AHA_3155		AHA_3155	3567588	3569579	+	5'-nucleotidase/2'%2C3'-cyclic phosphodiesterase	identified by match to protein family HMM PF00149%3B match to protein family HMM PF02872	gene	gene3153	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3155
AHA_3156	AHA_3156	pth	pth	3569777	3570373	+	peptidyl-tRNA hydrolase	identified by match to protein family HMM PF01195%3B match to protein family HMM TIGR00447	gene	gene3154	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3156
AHA_3157	AHA_3157	ychF	ychF	3570608	3571699	+	GTP-binding protein YchF	identified by match to protein family HMM PF01926%3B match to protein family HMM PF06071%3B match to protein family HMM TIGR00092	gene	gene3155	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3157
AHA_3158	AHA_3158		AHA_3158	3571935	3572011	+	tRNA-Met		tRNA	gene3156	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3158
AHA_3159	AHA_3159		AHA_3159	3572020	3572094	+	tRNA-Gln		tRNA	gene3157	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3159
AHA_3160	AHA_3160		AHA_3160	3572241	3572315	+	tRNA-Gln		tRNA	gene3158	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3160
AHA_3161	AHA_3161		AHA_3161	3572357	3572431	+	tRNA-Gln		tRNA	gene3159	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3161
AHA_3162	AHA_3162		AHA_3162	3572470	3572546	+	tRNA-Met		tRNA	gene3160	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3162
AHA_3163	AHA_3163		AHA_3163	3572592	3572666	+	tRNA-Gln		tRNA	gene3161	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3163
AHA_3164	AHA_3164		AHA_3164	3572703	3572779	+	tRNA-Met		tRNA	gene3162	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3164
AHA_3165	AHA_3165		AHA_3165	3572788	3572871	+	tRNA-Leu		tRNA	gene3163	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3165
AHA_3166	AHA_3166		AHA_3166	3573107	3574939	-	citrate transporter	identified by match to protein family HMM PF02080%3B match to protein family HMM PF03600%3B match to protein family HMM PF06808	gene	gene3164	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3166
AHA_3167	AHA_3167		AHA_3167	3575202	3575924	+	nicotinamide mononucleotide transporter PnuC	identified by similarity to SP:P31215%3B match to protein family HMM PF04973%3B match to protein family HMM TIGR01528	gene	gene3165	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3167
AHA_3168	AHA_3168		AHA_3168	3575921	3576646	+	uridine phosphorylase	identified by match to protein family HMM PF01048	gene	gene3166	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3168
AHA_3169	AHA_3169		AHA_3169	3576735	3577445	+	cAMP-binding protein	identified by match to protein family HMM PF00027	gene	gene3167	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3169
AHA_3170	AHA_3170		AHA_3170	3577489	3577806	+	conserved hypothetical protein		gene	gene3168	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3170
AHA_3171	AHA_3171		AHA_3171	3577904	3578275	+	conserved hypothetical protein	identified by match to protein family HMM PF07784	gene	gene3169	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3171
AHA_3172	AHA_3172		AHA_3172	3578305	3580116	+	trehalose-6-phosphate hydrolase	identified by match to protein family HMM PF00128	gene	gene3170	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3172
AHA_3173	AHA_3173		AHA_3173	3580526	3582316	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3171	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3173
AHA_3174	AHA_3174	nifJ-2	nifJ-2	3582804	3586349	+	pyruvate:ferredoxin (flavodoxin) oxidoreductase	identified by match to protein family HMM PF00037%3B match to protein family HMM PF01558%3B match to protein family HMM PF01855%3B match to protein family HMM TIGR02176	gene	gene3172	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3174
AHA_3175	AHA_3175		AHA_3175	3586417	3587904	-	drug resistance transporter%2C EmrB/QacA family	identified by match to protein family HMM PF07690	gene	gene3173	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3175
AHA_3176	AHA_3176		AHA_3176	3587959	3588555	+	phosphatase YqaB	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549%3B match to protein family HMM TIGR02009	gene	gene3174	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3176
AHA_3177	AHA_3177		AHA_3177	3588641	3589438	-	conserved hypothetical protein		gene	gene3175	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3177
AHA_3178	AHA_3178		AHA_3178	3589548	3591017	-	succinylglutamic semialdehyde dehydrogenase	identified by match to protein family HMM PF00171	gene	gene3176	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3178
AHA_3179	AHA_3179	astA	astA	3591088	3592107	-	arginine N-succinyltransferase beta subunit	identified by match to protein family HMM PF04958	gene	gene3177	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3179
AHA_3180	AHA_3180		AHA_3180	3592183	3593400	-	acetylornithine/succinyldiaminopimelate aminotransferase	identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00707	gene	gene3178	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3180
AHA_3181	AHA_3181		AHA_3181	3593678	3594259	-	para-aminobenzoate synthase glutamine amidotransferase component II	identified by match to protein family HMM PF00117%3B match to protein family HMM TIGR00566	gene	gene3179	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3181
AHA_3182	AHA_3182		AHA_3182	3594280	3594495	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3180	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3182
AHA_3183	AHA_3183	trpS-2	trpS-2	3594619	3595623	-	tryptophanyl-tRNA synthetase	identified by match to protein family HMM PF00579%3B match to protein family HMM TIGR00233	gene	gene3181	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3183
AHA_3184	AHA_3184	gph-2	gph-2	3595663	3596331	-	phosphoglycolate phosphatase%2C bacterial	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01449%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene3182	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3184
AHA_3185	AHA_3185	rpe	rpe	3596318	3597130	-	ribulose-phosphate 3-epimerase	identified by match to protein family HMM PF00834%3B match to protein family HMM TIGR01163	gene	gene3183	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3185
AHA_3186	AHA_3186		AHA_3186	3597382	3598254	-	DNA adenine methylase	identified by match to protein family HMM PF02086%3B match to protein family HMM TIGR00571	gene	gene3184	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3186
AHA_3187	AHA_3187		AHA_3187	3598325	3599932	-	DamX-related protein	identified by match to protein family HMM PF05036	gene	gene3185	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3187
AHA_3188	AHA_3188	aroB	aroB	3599922	3601004	-	3-dehydroquinate synthase	identified by match to protein family HMM PF01761%3B match to protein family HMM TIGR01357	gene	gene3186	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3188
AHA_3189	AHA_3189	aroK-2	aroK-2	3601019	3601537	-	shikimate kinase	identified by match to protein family HMM PF01202	gene	gene3187	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3189
AHA_3190	AHA_3190	pilQ	pilQ	3601729	3603930	-	type IV pilus secretin PilQ	identified by match to protein family HMM PF00263%3B match to protein family HMM PF03958%3B match to protein family HMM PF07660%3B match to protein family HMM TIGR02515	gene	gene3188	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3190
AHA_3191	AHA_3191		AHA_3191	3603945	3604475	-	type IV pilus biogenesis protein PilP	identified by match to protein family HMM PF04351	gene	gene3189	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3191
AHA_3192	AHA_3192	pilO	pilO	3604472	3605071	-	type IV pilus biogenesis protein PilO	identified by match to protein family HMM PF04350	gene	gene3190	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3192
AHA_3193	AHA_3193	pilN	pilN	3605068	3605646	-	type IV pilus biogenesis PilN	identified by match to protein family HMM PF05137	gene	gene3191	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3193
AHA_3194	AHA_3194	pilM	pilM	3605634	3606704	-	type IV pilus biogenesis protein PilM	identified by match to protein family HMM TIGR01175	gene	gene3192	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3194
AHA_3195	AHA_3195	mrcA	mrcA	3606991	3609480	+	penicillin-binding protein 1A	identified by similarity to SP:P02918%3B match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02074	gene	gene3193	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3195
AHA_3196	AHA_3196		AHA_3196	3609556	3610587	-	hydrogen peroxide-inducible genes activator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3194	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3196
AHA_3197	AHA_3197		AHA_3197	3610608	3612248	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3195	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3197
AHA_3198	AHA_3198		AHA_3198	3612471	3613106	-	thioredoxin domain protein%2C DsbA family		gene	gene3196	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3198
AHA_3199	AHA_3199		AHA_3199	3613187	3614047	-	Zn-dependent hydrolase	identified by match to protein family HMM PF00753	gene	gene3197	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3199
AHA_3200	AHA_3200		AHA_3200	3614174	3615073	+	LysR-family transcriptional regulatory protein	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3198	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3200
AHA_3201	AHA_3201		AHA_3201	3615156	3615932	-	conserved hypothetical protein		gene	gene3199	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3201
AHA_3202	AHA_3202		AHA_3202	3616109	3616966	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3200	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3202
AHA_3203	AHA_3203		AHA_3203	3617115	3617834	+	peptidase%2C M23/M37 family	identified by match to protein family HMM PF01551	gene	gene3201	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3203
AHA_3204	AHA_3204		AHA_3204	3617912	3619327	-	mate efflux family protein	identified by match to protein family HMM PF01554	gene	gene3202	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3204
AHA_3205	AHA_3205		AHA_3205	3619402	3622680	+	small Conductance Mechanosensitive Ion Channel (MscS) Family Protein	identified by match to protein family HMM PF00924	gene	gene3203	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3205
AHA_3206	AHA_3206		AHA_3206	3622703	3623422	+	glycerophosphoryl diester phosphodiesterase family protein	identified by match to protein family HMM PF03009	gene	gene3204	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3206
AHA_3207	AHA_3207		AHA_3207	3623548	3625425	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene3205	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3207
AHA_3208	AHA_3208	frdA	frdA	3625943	3627727	+	fumarate reductase%2C flavoprotein subunit	identified by match to protein family HMM PF00890%3B match to protein family HMM PF02910%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01176%3B match to protein family HMM TIGR01812	gene	gene3206	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3208
AHA_3209	AHA_3209		AHA_3209	3627720	3628454	+	fumarate reductase iron-sulfur protein	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR00384	gene	gene3207	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3209
AHA_3210	AHA_3210		AHA_3210	3628471	3628869	+	Fumarate reductase subunit C	identified by match to protein family HMM PF02300	gene	gene3208	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3210
AHA_3211	AHA_3211		AHA_3211	3628982	3629338	+	fumarate reductase subunit D	identified by match to protein family HMM PF02313	gene	gene3209	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3211
AHA_3212	AHA_3212		AHA_3212	3629484	3630182	-	conserved hypothetical protein		gene	gene3210	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3212
AHA_3213	AHA_3213		AHA_3213	3630276	3630917	+	probable transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene3211	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3213
AHA_3214	AHA_3214		AHA_3214	3631058	3631834	-	conserved hypothetical protein		gene	gene3212	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3214
AHA_3215	AHA_3215		AHA_3215	3631891	3633111	-	conserved hypothetical protein	identified by match to protein family HMM PF06224	gene	gene3213	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3215
AHA_3216	AHA_3216		AHA_3216	3633245	3633883	-	methyltransferase domain protein		gene	gene3214	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3216
AHA_3217	AHA_3217		AHA_3217	3634101	3634745	+	thermostable hemolysin		gene	gene3215	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3217
AHA_3218	AHA_3218		AHA_3218	3634742	3636208	+	long-chain acyl-CoA synthetases	identified by match to protein family HMM PF00501	gene	gene3216	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3218
AHA_3219	AHA_3219		AHA_3219	3636205	3636864	+	long-chain acyl-CoA synthetase		gene	gene3217	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3219
AHA_3220	AHA_3220		AHA_3220	3636861	3637706	+	oxidoreductase%2C short-chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106%3B match to protein family HMM PF07993	gene	gene3218	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3220
AHA_3221	AHA_3221		AHA_3221	3637708	3638346	+	TPR repeats containing protein		gene	gene3219	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3221
AHA_3222	AHA_3222		AHA_3222	3638429	3639118	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene3220	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3222
AHA_3223	AHA_3223		AHA_3223	3639115	3640554	+	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3221	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3223
AHA_3224	AHA_3224		AHA_3224	3640610	3641116	-	ATP-dependent Zn proteases	identified by match to protein family HMM PF05618	gene	gene3222	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3224
AHA_3225	AHA_3225	guaC	guaC	3641522	3642565	+	guanosine monophosphate reductase	identified by match to protein family HMM PF00478%3B match to protein family HMM TIGR01305	gene	gene3223	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3225
AHA_3226	AHA_3226		AHA_3226	3642660	3643868	+	conserved hypothetical protein		gene	gene3224	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3226
AHA_3227	AHA_3227	efp	efp	3643912	3644478	+	translation elongation factor P	identified by match to protein family HMM PF01132%3B match to protein family HMM PF08207%3B match to protein family HMM TIGR00038	gene	gene3225	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3227
AHA_3228	AHA_3228		AHA_3228	3644620	3645246	+	inner membrane protein YjdF		gene	gene3226	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3228
AHA_3229	AHA_3229		AHA_3229	3645314	3646066	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3227	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3229
AHA_3230	AHA_3230		AHA_3230	3646184	3647140	+	glycerate dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene3228	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3230
AHA_3231	AHA_3231		AHA_3231	3647202	3647672	-	surface antigen family protein	identified by match to protein family HMM PF05433	gene	gene3229	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3231
AHA_3232	AHA_3232		AHA_3232	3647882	3649435	-	GGDEF%2C putative	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3230	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3232
AHA_3233	AHA_3233		AHA_3233	3649724	3650326	+	nitroreductase family protein		gene	gene3231	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3233
AHA_3234	AHA_3234		AHA_3234	3650375	3651025	-	phosphatase YfbT	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR01549	gene	gene3232	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3234
AHA_3235	AHA_3235		AHA_3235	3651022	3651267	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3233	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3235
AHA_3236	AHA_3236		AHA_3236	3651385	3652293	+	isoleucine biosynthesis transcriptional activator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3234	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3236
AHA_3237	AHA_3237		AHA_3237	3652365	3653321	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene3235	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3237
AHA_3238	AHA_3238		AHA_3238	3653483	3654127	-	cold-shock protein%2C DNA-binding	identified by match to protein family HMM PF00313	gene	gene3236	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3238
AHA_3239	AHA_3239		AHA_3239	3654244	3654810	-	isochorismatase family protein	identified by match to protein family HMM PF00857	gene	gene3237	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3239
AHA_3240	AHA_3240		AHA_3240	3654844	3656007	-	2-octaprenyl-3-methyl-6-methoxy-1%2C4-benzoquinol hydroxylase	identified by match to protein family HMM PF01266%3B match to protein family HMM PF01494%3B match to protein family HMM TIGR01988	gene	gene3238	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3240
AHA_3241	AHA_3241	miaB	miaB	3656275	3657708	+	tRNA-I(6)A37 thiotransferase enzyme MiaB	identified by match to protein family HMM PF00919%3B match to protein family HMM PF01938%3B match to protein family HMM PF04055%3B match to protein family HMM TIGR00089%3B match to protein family HMM TIGR01574	gene	gene3239	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3241
AHA_3242	AHA_3242		AHA_3242	3657764	3658807	+	PhoH family protein	identified by match to protein family HMM PF00013%3B match to protein family HMM PF02562	gene	gene3240	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3242
AHA_3243	AHA_3243		AHA_3243	3658804	3659268	+	conserved hypothetical protein	identified by match to protein family HMM PF02130%3B match to protein family HMM TIGR00043	gene	gene3241	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3243
AHA_3244	AHA_3244	corC	corC	3659364	3660248	+	magnesium and cobalt efflux protein CorC	identified by similarity to SP:P0A2L3%3B match to protein family HMM PF00571%3B match to protein family HMM PF03471	gene	gene3242	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3244
AHA_3245	AHA_3245	lnt	lnt	3660468	3662012	+	apolipoprotein N-acyltransferase	identified by similarity to SP:P23930%3B match to protein family HMM PF00795%3B match to protein family HMM TIGR00546	gene	gene3243	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3245
AHA_3246	AHA_3246		AHA_3246	3662228	3662716	-	conserved hypothetical protein	identified by similarity to GB:AAF94119.1%3B match to protein family HMM PF07295	gene	gene3244	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3246
AHA_3247	AHA_3247	leuS	leuS	3662709	3665441	+	leucyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00396	gene	gene3245	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3247
AHA_3248	AHA_3248	rlpB	rlpB	3665541	3666041	+	rare lipoprotein B	identified by match to protein family HMM PF04390	gene	gene3246	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3248
AHA_3249	AHA_3249		AHA_3249	3666066	3666212	+	DNA polymerase III%2C delta subunit		gene	gene3247	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3249
AHA_3250	AHA_3250	holA	holA	3666212	3667243	+	DNA polymerase III%2C delta subunit	identified by match to protein family HMM PF06144%3B match to protein family HMM TIGR01128	gene	gene3248	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3250
AHA_3251	AHA_3251	nadD	nadD	3667284	3667928	+	nicotinate (nicotinamide) nucleotide adenylyltransferase	identified by match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR00482	gene	gene3249	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3251
AHA_3252	AHA_3252		AHA_3252	3668114	3668455	+	iojap protein family	identified by match to protein family HMM PF02410%3B match to protein family HMM TIGR00090	gene	gene3250	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3252
AHA_3253	AHA_3253		AHA_3253	3668478	3668945	+	conserved hypothetical protein	identified by match to protein family HMM PF02590%3B match to protein family HMM TIGR00246	gene	gene3251	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3253
AHA_3254	AHA_3254		AHA_3254	3669051	3670967	+	penicillin-binding protein 2	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717	gene	gene3252	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3254
AHA_3255	AHA_3255	mrdB	mrdB	3670882	3672063	+	rod shape-determining protein RodA	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02210	gene	gene3253	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3255
AHA_3256	AHA_3256		AHA_3256	3672060	3672197	+	rod shape-determining protein RodA		gene	gene3254	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3256
AHA_3257	AHA_3257	mltB-2	mltB-2	3672293	3673195	+	lytic murein transglycosylase B	identified by match to protein family HMM TIGR02282	gene	gene3255	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3257
AHA_3258	AHA_3258	rlpA	rlpA	3673137	3674102	+	rare lipoprotein A	identified by match to protein family HMM PF03330%3B match to protein family HMM PF05036%3B match to protein family HMM TIGR00413	gene	gene3256	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3258
AHA_3259	AHA_3259		AHA_3259	3674297	3675487	+	penicillin-binding protein	identified by match to protein family HMM PF00768%3B match to protein family HMM PF07943	gene	gene3257	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3259
AHA_3260	AHA_3260		AHA_3260	3675780	3676043	+	conserved hypothetical protein	identified by match to protein family HMM PF04359	gene	gene3258	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3260
AHA_3261	AHA_3261	lipB	lipB	3676140	3676844	+	lipoate-protein ligase B	identified by similarity to SP:P60720%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00214	gene	gene3259	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3261
AHA_3262	AHA_3262		AHA_3262	3676841	3676933	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3260	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3262
AHA_3263	AHA_3263	lipA	lipA	3676930	3677895	+	lipoic acid synthetase	identified by match to protein family HMM PF04055%3B match to protein family HMM TIGR00510	gene	gene3261	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3263
AHA_3264	AHA_3264		AHA_3264	3678047	3678556	+	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene3262	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3264
AHA_3265	AHA_3265		AHA_3265	3678695	3679264	+	conserved hypothetical protein	identified by match to protein family HMM PF06821	gene	gene3263	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3265
AHA_3266	AHA_3266	nqrE-2	nqrE-2	3679309	3679908	-	NADH:ubiquinone oxidoreductase%2C na(+)-translocating%2C e subunit	identified by match to protein family HMM PF02508%3B match to protein family HMM TIGR01940	gene	gene3264	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3266
AHA_3267	AHA_3267		AHA_3267	3680063	3680590	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3265	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3267
AHA_3268	AHA_3268		AHA_3268	3680692	3681195	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3266	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3268
AHA_3269	AHA_3269		AHA_3269	3681235	3682626	-	methyltransferase	identified by match to protein family HMM PF00376	gene	gene3267	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3269
AHA_3270	AHA_3270	recJ	recJ	3682566	3684296	-	single-stranded-DNA-specific exonuclease RecJ	identified by match to protein family HMM PF01368%3B match to protein family HMM PF02272%3B match to protein family HMM TIGR00644	gene	gene3268	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3270
AHA_3271	AHA_3271	dsbC	dsbC	3684262	3684978	-	thiol:disulfide interchange protein DsbC	identified by similarity to SP:P21892	gene	gene3269	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3271
AHA_3272	AHA_3272	mscL	mscL	3685239	3685646	+	large conductance mechanosensitive channel protein	identified by match to protein family HMM PF01741%3B match to protein family HMM TIGR00220	gene	gene3270	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3272
AHA_3273	AHA_3273	xerD	xerD	3687378	3688277	-	tyrosine recombinase XerD	identified by match to protein family HMM PF00589%3B match to protein family HMM PF02899%3B match to protein family HMM TIGR02225	gene	gene3272	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3273
AHA_3274	AHA_3274		AHA_3274	3685975	3687381	+	GGDEF family protein	identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254	gene	gene3271	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3274
AHA_3275	AHA_3275		AHA_3275	3688465	3688983	+	flavodoxin	identified by match to protein family HMM PF00258%3B match to protein family HMM TIGR01752	gene	gene3273	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3275
AHA_3276	AHA_3276		AHA_3276	3689296	3690696	+	TldD protein	identified by match to protein family HMM PF01523	gene	gene3274	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3276
AHA_3277	AHA_3277		AHA_3277	3690696	3692036	+	putative PmbA-related protein	identified by match to protein family HMM PF01523	gene	gene3275	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3277
AHA_3278	AHA_3278		AHA_3278	3692230	3692604	+	putative glyoxalase	identified by match to protein family HMM PF00903	gene	gene3276	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3278
AHA_3279	AHA_3279		AHA_3279	3692680	3693606	-	LysM domain protein	identified by match to protein family HMM PF03734	gene	gene3277	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3279
AHA_3280	AHA_3280		AHA_3280	3693885	3695168	-	glycosyltransferase%2C MGT family	identified by match to protein family HMM PF00201%3B match to protein family HMM TIGR01426	gene	gene3278	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3280
AHA_3281	AHA_3281		AHA_3281	3695168	3696043	-	pyoverdine chromophore biosynthetic protein PvcB	identified by similarity to GB:AAC21672.1%3B match to protein family HMM PF02668	gene	gene3279	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3281
AHA_3282	AHA_3282		AHA_3282	3696054	3697028	-	pyoverdine chromophore biosynthetic protein PvcA	identified by similarity to GB:AAC21671.1%3B match to protein family HMM PF05141	gene	gene3280	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3282
AHA_3283	AHA_3283		AHA_3283	3697584	3698420	-	alpha-beta superfamily hydrolase	identified by match to protein family HMM PF01734	gene	gene3281	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3283
AHA_3284	AHA_3284		AHA_3284	3698541	3699923	+	succinyl-CoA synthetase%2C alpha subunit		gene	gene3282	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3284
AHA_3285	AHA_3285		AHA_3285	3699980	3703087	-	TtrA	identified by match to protein family HMM PF01568	gene	gene3283	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3285
AHA_3286	AHA_3286		AHA_3286	3703087	3704193	-	tetrathionate reductase subunit C	identified by match to protein family HMM PF03916	gene	gene3284	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3286
AHA_3287	AHA_3287		AHA_3287	3704183	3704971	-	tetrathionate reductase%2C subunit B	identified by match to protein family HMM PF00037	gene	gene3285	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3287
AHA_3288	AHA_3288		AHA_3288	3705108	3707192	+	two component system histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF02518	gene	gene3286	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3288
AHA_3289	AHA_3289		AHA_3289	3707189	3707800	+	transcriptional regulatory protein FixJ	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00196	gene	gene3287	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3289
AHA_3290	AHA_3290	lytS	lytS	3708025	3709719	+	sensor protein LytS	identified by similarity to SP:P94513%3B match to protein family HMM PF01590%3B match to protein family HMM PF02518%3B match to protein family HMM PF06580%3B match to protein family HMM PF07694	gene	gene3288	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3290
AHA_3291	AHA_3291		AHA_3291	3709713	3710450	+	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF04397	gene	gene3289	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3291
AHA_3292	AHA_3292		AHA_3292	3710666	3712474	+	carbon starvation protein A	identified by match to protein family HMM PF02554	gene	gene3290	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3292
AHA_3293	AHA_3293	pepE	pepE	3712667	3713395	+	dipeptidase E	identified by similarity to SP:P36936%3B match to protein family HMM PF03575	gene	gene3291	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3293
AHA_3294	AHA_3294	fumC	fumC	3713469	3714863	+	fumarate hydratase%2C class II	identified by match to protein family HMM PF00206%3B match to protein family HMM TIGR00979	gene	gene3292	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3294
AHA_3295	AHA_3295		AHA_3295	3714933	3715307	-	conserved hypothetical protein	identified by match to protein family HMM PF06476	gene	gene3293	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3295
AHA_3296	AHA_3296		AHA_3296	3715486	3715839	+	DsrE/DsrF-like family	identified by match to protein family HMM PF02635	gene	gene3294	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3296
AHA_3297	AHA_3297		AHA_3297	3715974	3717056	+	sensor histidine kinase	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3295	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3297
AHA_3298	AHA_3298		AHA_3298	3717060	3718274	-	transporter%2C MFS superfamily	identified by match to protein family HMM PF07690	gene	gene3296	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3298
AHA_3299	AHA_3299		AHA_3299	3718404	3720542	-	polyribonucleotide nucleotidyltransferase	identified by match to protein family HMM PF00013%3B match to protein family HMM PF00575%3B match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM PF03726	gene	gene3297	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3299
AHA_3300	AHA_3300	rpsO	rpsO	3720710	3720979	-	ribosomal protein S15	identified by match to protein family HMM PF00312%3B match to protein family HMM TIGR00952	gene	gene3298	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3300
AHA_3301	AHA_3301		AHA_3301	3721124	3722122	-	tRNA pseudouridine synthase B	identified by match to protein family HMM PF01509%3B match to protein family HMM TIGR00431	gene	gene3299	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3301
AHA_3302	AHA_3302	rbfA	rbfA	3722085	3722519	-	ribosome-binding factor A	identified by match to protein family HMM PF02033%3B match to protein family HMM TIGR00082	gene	gene3300	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3302
AHA_3303	AHA_3303		AHA_3303	3722575	3725268	-	translation initiation factor IF-2	identified by match to protein family HMM PF00009%3B match to protein family HMM PF01926%3B match to protein family HMM PF03144%3B match to protein family HMM PF04760%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00487	gene	gene3301	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3303
AHA_3304	AHA_3304		AHA_3304	3725289	3726791	-	transcription elongation protein NusA	identified by match to protein family HMM PF00575%3B match to protein family HMM TIGR01953%3B match to protein family HMM TIGR01954	gene	gene3302	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3304
AHA_3305	AHA_3305		AHA_3305	3726806	3727333	-	15 kDa protein	identified by match to protein family HMM PF02576	gene	gene3303	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3305
AHA_3306	AHA_3306		AHA_3306	3727432	3727508	-	tRNA-Met		tRNA	gene3304	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3306
AHA_3307	AHA_3307		AHA_3307	3727601	3727685	-	tRNA-Leu		tRNA	gene3305	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3307
AHA_3308	AHA_3308	secG	secG	3727693	3728019	-	preprotein translocase%2C SecG subunit	identified by similarity to SP:P33582%3B match to protein family HMM PF03840%3B match to protein family HMM TIGR00810	gene	gene3306	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3308
AHA_3309	AHA_3309	tpiA-2	tpiA-2	3728020	3728784	-	triosephosphate isomerase	identified by match to protein family HMM PF00121%3B match to protein family HMM TIGR00419	gene	gene3307	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3309
AHA_3310	AHA_3310	glmM	glmM	3728916	3730250	-	phosphoglucosamine mutase	identified by match to protein family HMM PF00408%3B match to protein family HMM PF02878%3B match to protein family HMM PF02879%3B match to protein family HMM PF02880%3B match to protein family HMM TIGR01455	gene	gene3308	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3310
AHA_3311	AHA_3311	folP	folP	3730268	3731113	-	dihydropteroate synthase	identified by similarity to SP:P26282%3B match to protein family HMM PF00809%3B match to protein family HMM TIGR01496	gene	gene3309	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3311
AHA_3312	AHA_3312	hflB	hflB	3731176	3733125	-	ATP-dependent metallopeptidase HflB	identified by similarity to SP:P0AAI3%3B match to protein family HMM PF00004%3B match to protein family HMM PF01434%3B match to protein family HMM PF06480%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR01241	gene	gene3310	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3312
AHA_3313	AHA_3313	rrmJ	rrmJ	3733171	3733800	-	ribosomal RNA large subunit methyltransferase J	identified by match to protein family HMM PF01728	gene	gene3311	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3313
AHA_3314	AHA_3314		AHA_3314	3733898	3734194	+	conserved hypothetical protein	identified by match to protein family HMM PF01985%3B match to protein family HMM TIGR00253	gene	gene3312	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3314
AHA_3315	AHA_3315		AHA_3315	3734299	3734892	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3313	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3315
AHA_3316	AHA_3316		AHA_3316	3734940	3735416	-	transcription elongation factor GreA	identified by match to protein family HMM PF01272%3B match to protein family HMM PF03449%3B match to protein family HMM TIGR01462	gene	gene3314	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3316
AHA_3317	AHA_3317		AHA_3317	3735571	3736470	-	sodium-driven polar flagellar protein	identified by match to protein family HMM PF00691	gene	gene3315	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3317
AHA_3318	AHA_3318		AHA_3318	3736479	3737237	-	chemotaxis protein PomA	identified by match to protein family HMM PF01618	gene	gene3316	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3318
AHA_3319	AHA_3319		AHA_3319	3737212	3737709	+	exodeoxyribonuclease VII%2C small subunit	identified by match to protein family HMM PF02609%3B match to protein family HMM TIGR01280	gene	gene3317	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3319
AHA_3320	AHA_3320		AHA_3320	3737710	3738600	+	geranyltranstransferase	identified by match to protein family HMM PF00348	gene	gene3318	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3320
AHA_3321	AHA_3321	dxs	dxs	3738622	3740487	+	1-deoxy-D-xylulose-5-phosphate synthase	identified by match to protein family HMM PF02779%3B match to protein family HMM PF02780%3B match to protein family HMM TIGR00204	gene	gene3319	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3321
AHA_3322	AHA_3322		AHA_3322	3740562	3741503	-	dipeptide transport system permease protein DppC	identified by match to protein family HMM PF00528	gene	gene3320	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3322
AHA_3323	AHA_3323		AHA_3323	3741507	3742481	-	dipeptide transport system permease protein DppB	identified by match to protein family HMM PF00528	gene	gene3321	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3323
AHA_3324	AHA_3324		AHA_3324	3742581	3744137	-	peptide ABC transporter%2C periplasmic peptide-binding protein	identified by match to protein family HMM PF00496	gene	gene3322	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3324
AHA_3325	AHA_3325		AHA_3325	3744208	3745932	-	dipeptide transport ATP-binding protein DppD	identified by match to protein family HMM PF00005	gene	gene3323	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3325
AHA_3326	AHA_3326		AHA_3326	3746443	3746937	-	phosphatidylglycerophosphatase A	identified by match to protein family HMM PF04608	gene	gene3324	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3326
AHA_3327	AHA_3327	thiL	thiL	3746934	3747893	-	thiamine-monophosphate kinase	identified by match to protein family HMM PF02769%3B match to protein family HMM TIGR01379	gene	gene3325	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3327
AHA_3328	AHA_3328	nusB	nusB	3747954	3748367	-	transcription antitermination factor NusB	identified by match to protein family HMM PF01029%3B match to protein family HMM TIGR01951	gene	gene3326	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3328
AHA_3329	AHA_3329	ribE-2	ribE-2	3748382	3748966	-	6%2C7-dimethyl-8-ribityllumazine synthase	identified by match to protein family HMM PF00885%3B match to protein family HMM TIGR00114	gene	gene3327	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3329
AHA_3330	AHA_3330		AHA_3330	3749050	3750249	+	tonin	identified by match to protein family HMM PF00089	gene	gene3328	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3330
AHA_3331	AHA_3331		AHA_3331	3750313	3751422	-	riboflavin biosynthesis protein RibA	identified by match to protein family HMM PF00925%3B match to protein family HMM PF00926%3B match to protein family HMM TIGR00506	gene	gene3329	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3331
AHA_3332	AHA_3332	ribE-3	ribE-3	3751564	3752217	-	riboflavin synthase%2C alpha subunit	identified by match to protein family HMM PF00677%3B match to protein family HMM TIGR00187	gene	gene3330	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3332
AHA_3333	AHA_3333	ribD	ribD	3752272	3753381	-	riboflavin biosynthesis protein RibD	identified by similarity to SP:P25539%3B match to protein family HMM PF00383%3B match to protein family HMM PF01872%3B match to protein family HMM TIGR00227%3B match to protein family HMM TIGR00326	gene	gene3331	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3333
AHA_3334	AHA_3334	nrdR	nrdR	3753478	3753927	-	transcriptional regulator%2C NrdR family	identified by match to protein family HMM PF03477%3B match to protein family HMM TIGR00244	gene	gene3332	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3334
AHA_3335	AHA_3335		AHA_3335	3754061	3754540	-	conserved hypothetical protein		gene	gene3333	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3335
AHA_3336	AHA_3336	glyA	glyA	3754625	3755878	-	serine hydroxymethyltransferase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00464%3B match to protein family HMM PF01212%3B match to protein family HMM PF01276	gene	gene3334	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3336
AHA_3337	AHA_3337		AHA_3337	3756365	3757027	+	ADP-ribosylglycohydrolase family protein	identified by match to protein family HMM PF04828	gene	gene3335	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3337
AHA_3338	AHA_3338		AHA_3338	3757176	3757820	+	chaperone protein TorD	identified by match to protein family HMM PF06192	gene	gene3336	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3338
AHA_3339	AHA_3339		AHA_3339	3757828	3758196	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3337	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3339
AHA_3340	AHA_3340		AHA_3340	3758366	3759505	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3338	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3340
AHA_3341	AHA_3341		AHA_3341	3759477	3760127	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3339	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3341
AHA_3342	AHA_3342		AHA_3342	3760233	3762683	+	MorA	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene3340	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3342
AHA_3343	AHA_3343		AHA_3343	3762730	3763026	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3341	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3343
AHA_3344	AHA_3344	acsA	acsA	3763195	3765141	+	acetate--CoA ligase	identified by match to protein family HMM PF00501%3B match to protein family HMM TIGR02188	gene	gene3342	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3344
AHA_3345	AHA_3345	aroQ	aroQ	3765408	3765857	+	3-dehydroquinate dehydratase%2C type II	identified by match to protein family HMM PF01220%3B match to protein family HMM TIGR01088	gene	gene3343	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3345
AHA_3346	AHA_3346	accB	accB	3765894	3766349	+	acetyl-CoA carboxylase%2C biotin carboxyl carrier protein	identified by match to protein family HMM PF00364%3B match to protein family HMM TIGR00531	gene	gene3344	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3346
AHA_3347	AHA_3347	accC	accC	3766365	3767705	+	acetyl-CoA carboxylase%2C biotin carboxylase	identified by match to protein family HMM PF00289%3B match to protein family HMM PF01071%3B match to protein family HMM PF02785%3B match to protein family HMM PF02786%3B match to protein family HMM TIGR00514	gene	gene3345	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3347
AHA_3348	AHA_3348		AHA_3348	3767833	3768096	+	conserved hypothetical protein		gene	gene3346	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3348
AHA_3349	AHA_3349	panF	panF	3768086	3769564	+	sodium/pantothenate symporter	identified by similarity to SP:P16256%3B match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02119	gene	gene3347	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3349
AHA_3350	AHA_3350		AHA_3350	3769642	3771069	+	pts system N-acetylglucosamine-specific eiicba component (eiicba-nag)(eii-nag)	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378	gene	gene3348	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3350
AHA_3351	AHA_3351		AHA_3351	3771072	3771920	-	LysR-family transcriptional activator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3349	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3351
AHA_3352	AHA_3352		AHA_3352	3772045	3773061	+	zinc-containing alcohol dehydrogenase superfamily	identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR02817	gene	gene3350	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3352
AHA_3353	AHA_3353	prmA	prmA	3773577	3774455	+	ribosomal protein L11 methyltransferase	identified by match to protein family HMM PF05175%3B match to protein family HMM PF06325%3B match to protein family HMM TIGR00406	gene	gene3351	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3353
AHA_3354	AHA_3354		AHA_3354	3774651	3775628	+	glyoxylate reductase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene3352	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3354
AHA_3355	AHA_3355		AHA_3355	3775702	3776265	+	nodulation protein L	identified by match to protein family HMM PF00132	gene	gene3353	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3355
AHA_3356	AHA_3356		AHA_3356	3776814	3777362	-	nitroreductase family protein	identified by match to protein family HMM PF00881	gene	gene3354	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3356
AHA_3357	AHA_3357		AHA_3357	3777469	3779484	-	2%2C4-dienoyl-coa reductase (nadph)	identified by match to protein family HMM PF00070%3B match to protein family HMM PF00724%3B match to protein family HMM PF07992	gene	gene3355	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3357
AHA_3358	AHA_3358	sppA	sppA	3779795	3781639	+	signal peptide peptidase SppA%2C 67K type	identified by match to protein family HMM PF01343%3B match to protein family HMM TIGR00705%3B match to protein family HMM TIGR00706	gene	gene3356	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3358
AHA_3359	AHA_3359		AHA_3359	3781707	3782264	-	MutT/nudix family protein	identified by match to protein family HMM PF00293	gene	gene3357	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3359
AHA_3360	AHA_3360		AHA_3360	3782271	3783071	-	conserved hypothetical protein		gene	gene3358	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3360
AHA_3361	AHA_3361	gap-1	gap-1	3783326	3784699	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534	gene	gene3359	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3361
AHA_3362	AHA_3362		AHA_3362	3784740	3785033	+	general negative regulator of transcription subunit 1	identified by match to protein family HMM PF07023	gene	gene3360	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3362
AHA_3363	AHA_3363		AHA_3363	3785130	3786788	-	conserved hypothetical protein		gene	gene3361	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3363
AHA_3364	AHA_3364		AHA_3364	3786797	3788911	-	MoxR-related protein	identified by match to protein family HMM PF07728	gene	gene3362	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3364
AHA_3365	AHA_3365		AHA_3365	3789179	3790186	-	L-asparaginase I	identified by match to protein family HMM PF00710%3B match to protein family HMM TIGR00519	gene	gene3363	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3365
AHA_3366	AHA_3366	gltS	gltS	3790701	3791900	+	sodium/glutamate symporter	identified by similarity to SP:P19933%3B match to protein family HMM PF03616%3B match to protein family HMM TIGR00210	gene	gene3364	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3366
AHA_3367	AHA_3367		AHA_3367	3792087	3793958	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene3365	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3367
AHA_3368	AHA_3368	prfB	prfB	3794212	3795310	+	peptide chain release factor 2 (programmed frameshift)	identified by match to protein family HMM PF00472%3B match to protein family HMM PF03462%3B match to protein family HMM TIGR00020	gene	gene3366	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3368
AHA_3369	AHA_3369	lysS	lysS	3795335	3796870	+	lysyl-tRNA synthetase	identified by match to protein family HMM PF00152%3B match to protein family HMM PF01336%3B match to protein family HMM TIGR00499	gene	gene3367	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3369
AHA_3370	AHA_3370		AHA_3370	3797000	3797803	-	phenazine biosynthesis protein PhzF family	identified by match to protein family HMM PF02567%3B match to protein family HMM TIGR00654	gene	gene3368	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3370
AHA_3371	AHA_3371		AHA_3371	3797999	3799792	+	sulfite reductase [NADPH] flavoprotein%2C alpha-component	identified by match to protein family HMM PF00175%3B match to protein family HMM PF00258%3B match to protein family HMM PF00667%3B match to protein family HMM TIGR01931	gene	gene3369	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3371
AHA_3372	AHA_3372	cysI	cysI	3799792	3801504	+	sulfite reductase (NADPH) hemoprotein%2C beta-component	identified by match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM TIGR02041	gene	gene3370	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3372
AHA_3373	AHA_3373	cysH	cysH	3801494	3802300	+	phosphoadenosine phosphosulfate reductase	identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR00434%3B match to protein family HMM TIGR02057	gene	gene3371	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3373
AHA_3374	AHA_3374		AHA_3374	3802393	3803394	-	glycine betaine/L-proline ABC transporter%2C periplasmic glycine betaine-binding protein	identified by match to protein family HMM PF04069	gene	gene3372	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3374
AHA_3375	AHA_3375		AHA_3375	3803391	3804542	-	glycine betaine/L-proline ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3373	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3375
AHA_3376	AHA_3376		AHA_3376	3804539	3805735	-	glycine betaine/L-proline ABC transporter%2C ATP binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00571%3B match to protein family HMM TIGR01186	gene	gene3374	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3376
AHA_3377	AHA_3377	folA	folA	3806237	3806728	-	dihydrofolate reductase	identified by similarity to SP:P00379%3B match to protein family HMM PF00186	gene	gene3375	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3377
AHA_3378	AHA_3378		AHA_3378	3806753	3807220	-	putative membrane protein		gene	gene3376	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3378
AHA_3379	AHA_3379		AHA_3379	3807217	3808014	-	putative membrane protein	identified by match to protein family HMM PF06738	gene	gene3377	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3379
AHA_3380	AHA_3380		AHA_3380	3808250	3808591	-	conserved hypothetical protein		gene	gene3378	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3380
AHA_3381	AHA_3381	mog	mog	3808990	3809520	+	molybdopterin biosynthesis mog protein	identified by similarity to SP:P28694%3B match to protein family HMM PF00994%3B match to protein family HMM TIGR00177	gene	gene3379	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3381
AHA_3382	AHA_3382		AHA_3382	3810055	3811281	-	3-oxoacyl-[acyl-carrier-protein] synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801	gene	gene3380	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3382
AHA_3383	AHA_3383		AHA_3383	3811278	3812003	-	3-oxoacyl-(acyl-carrier-protein) reductase%2C putative	identified by match to protein family HMM PF00106%3B match to protein family HMM TIGR01831	gene	gene3381	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3383
AHA_3384	AHA_3384		AHA_3384	3812013	3812474	-	thioester dehydrase family protein	identified by match to protein family HMM PF07977	gene	gene3382	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3384
AHA_3385	AHA_3385		AHA_3385	3812467	3813651	-	3-oxoacyl-(acyl-carrier-protein) synthase II	identified by match to protein family HMM PF00109%3B match to protein family HMM PF02801	gene	gene3383	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3385
AHA_3386	AHA_3386		AHA_3386	3813648	3814205	-	conserved hypothetical protein		gene	gene3384	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3386
AHA_3387	AHA_3387		AHA_3387	3814202	3816562	-	putative membrane protein		gene	gene3385	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3387
AHA_3388	AHA_3388		AHA_3388	3816613	3817227	-	putative exported protein		gene	gene3386	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3388
AHA_3389	AHA_3389		AHA_3389	3817224	3817649	-	4-hydroxybenzoyl-CoA thioesterase domain protein		gene	gene3387	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3389
AHA_3390	AHA_3390		AHA_3390	3817678	3819240	-	phenylalanine and histidine ammonia-lyase	identified by match to protein family HMM PF00221	gene	gene3388	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3390
AHA_3391	AHA_3391		AHA_3391	3819227	3820930	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene3389	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3391
AHA_3392	AHA_3392		AHA_3392	3820927	3821298	-	3-hydroxymyristoyl/3-hydroxydecanoyl-(acyl carrier protein) dehydratase	identified by match to protein family HMM PF07977	gene	gene3390	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3392
AHA_3393	AHA_3393		AHA_3393	3821282	3822652	-	acyl-coenzyme A synthetase	identified by match to protein family HMM PF00501	gene	gene3391	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3393
AHA_3394	AHA_3394		AHA_3394	3822649	3823287	-	DNA gyrase subunit B		gene	gene3392	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3394
AHA_3395	AHA_3395		AHA_3395	3823256	3823504	-	acyl carrier protein	identified by match to protein family HMM PF00550	gene	gene3393	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3395
AHA_3396	AHA_3396		AHA_3396	3823508	3823795	-	putative acyl carrier protein		gene	gene3394	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3396
AHA_3397	AHA_3397		AHA_3397	3823792	3824550	-	1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553	gene	gene3395	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3397
AHA_3398	AHA_3398		AHA_3398	3824535	3825248	-	beta-ketoacyl synthase domain protein		gene	gene3396	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3398
AHA_3399	AHA_3399		AHA_3399	3825425	3825889	+	conserved hypothetical protein		gene	gene3397	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3399
AHA_3400	AHA_3400		AHA_3400	3825908	3826984	+	SAM-dependent methyltransferase	identified by match to protein family HMM PF00891	gene	gene3398	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3400
AHA_3401	AHA_3401		AHA_3401	3827032	3827247	+	conserved hypothetical protein		gene	gene3399	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3401
AHA_3402	AHA_3402		AHA_3402	3827293	3828048	-	DNA/RNA non-specific endonuclease	identified by match to protein family HMM PF01223	gene	gene3400	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3402
AHA_3403	AHA_3403		AHA_3403	3828292	3829269	-	cytochrome c551 peroxidase	identified by match to protein family HMM PF00034%3B match to protein family HMM PF03150	gene	gene3401	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3403
AHA_3404	AHA_3404		AHA_3404	3829719	3830444	+	carbonic anhydrase	identified by match to protein family HMM PF00194	gene	gene3402	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3404
AHA_3405	AHA_3405		AHA_3405	3830519	3831427	-	indigoidine synthase A like protein	identified by match to protein family HMM PF04227	gene	gene3403	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3405
AHA_3406	AHA_3406		AHA_3406	3831421	3832356	-	kinase%2C pfkB family	identified by match to protein family HMM PF00294	gene	gene3404	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3406
AHA_3407	AHA_3407		AHA_3407	3832658	3833170	-	nitrite reductase [NAD(P)H] large subunit	identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR02378	gene	gene3405	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3407
AHA_3408	AHA_3408	nirB-1	nirB-1	3833218	3835803	-	nitrite reductase [NAD(P)H]%2C large subunit	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM PF04324%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02374	gene	gene3406	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3408
AHA_3409	AHA_3409		AHA_3409	3835829	3836650	-	nitrate transport ATP-binding protein NrtC	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01184	gene	gene3407	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3409
AHA_3410	AHA_3410		AHA_3410	3836682	3837626	-	nitrate transporter component	identified by match to protein family HMM PF00528	gene	gene3408	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3410
AHA_3411	AHA_3411		AHA_3411	3837641	3839140	-	ABC-type nitrate/sulfonate/bicarbonate transport system%2C periplasmic component		gene	gene3409	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3411
AHA_3412	AHA_3412		AHA_3412	3839437	3840021	-	response regulator NasT%2C putative	identified by match to protein family HMM PF03861	gene	gene3410	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3412
AHA_3413	AHA_3413	cobA	cobA	3840161	3840919	-	uroporphyrin-III C-methyltransferase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469	gene	gene3411	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3413
AHA_3414	AHA_3414		AHA_3414	3841089	3843725	-	nitrate reductase	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM PF04324%3B match to protein family HMM PF04879	gene	gene3412	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3414
AHA_3415	AHA_3415		AHA_3415	3844029	3844535	+	23S rRNA methyltransferase	identified by match to protein family HMM PF00588	gene	gene3413	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3415
AHA_3416	AHA_3416		AHA_3416	3844525	3844641	+	RNA methyltransferase%2C TrmH family		gene	gene3414	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3416
AHA_3417	AHA_3417		AHA_3417	3844801	3845541	-	conserved hypothetical protein		gene	gene3415	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3417
AHA_3418	AHA_3418		AHA_3418	3845728	3846159	+	universal stress protein family	identified by match to protein family HMM PF00582	gene	gene3416	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3418
AHA_3419	AHA_3419		AHA_3419	3846229	3846864	-	conserved hypothetical protein		gene	gene3417	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3419
AHA_3420	AHA_3420	proA	proA	3847018	3848271	-	gamma-glutamyl phosphate reductase	identified by match to protein family HMM TIGR00407	gene	gene3418	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3420
AHA_3421	AHA_3421	proB	proB	3848364	3849467	-	glutamate 5-kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM PF01472%3B match to protein family HMM TIGR01027	gene	gene3419	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3421
AHA_3422	AHA_3422	crl	crl	3849628	3850020	-	curlin genes transcriptional activatory protein	identified by similarity to SP:P24251%3B match to protein family HMM PF07417	gene	gene3420	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3422
AHA_3423	AHA_3423		AHA_3423	3850082	3851350	-	esterase YafA	identified by match to protein family HMM PF06500	gene	gene3421	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3423
AHA_3424	AHA_3424	gpt	gpt	3851470	3851937	-	xanthine-guanine phosphoribosyltransferase	identified by similarity to SP:P0A9M5%3B match to protein family HMM PF00156	gene	gene3422	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3424
AHA_3425	AHA_3425		AHA_3425	3852374	3852487	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3423	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3425
AHA_3426	AHA_3426	pepD	pepD	3852857	3854308	+	aminoacyl-histidine dipeptidase	identified by similarity to SP:P15288%3B match to protein family HMM PF01546%3B match to protein family HMM PF07687%3B match to protein family HMM TIGR01893	gene	gene3424	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3426
AHA_3427	AHA_3427		AHA_3427	3854650	3854769	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3425	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3427
AHA_3428	AHA_3428		AHA_3428	3854994	3855995	-	oligopeptide transport ATP-binding protein AppF	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene3426	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3428
AHA_3429	AHA_3429		AHA_3429	3855992	3857035	-	oligopeptide transport ATP-binding protein OppD	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01727	gene	gene3427	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3429
AHA_3430	AHA_3430		AHA_3430	3857061	3858878	-	oligopeptide-binding protein OppA	identified by match to protein family HMM PF00496	gene	gene3428	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3430
AHA_3431	AHA_3431		AHA_3431	3858961	3859998	-	inner membrane ABC transporter permease protein YejE	identified by match to protein family HMM PF00528	gene	gene3429	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3431
AHA_3432	AHA_3432		AHA_3432	3860001	3861026	-	oligopeptide transport system permease protein OppB	identified by match to protein family HMM PF00528	gene	gene3430	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3432
AHA_3433	AHA_3433		AHA_3433	3861765	3864320	+	outer membrane protein	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715	gene	gene3431	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3433
AHA_3434	AHA_3434		AHA_3434	3864431	3865195	+	TonB system biopolymer transport component		gene	gene3432	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3434
AHA_3435	AHA_3435		AHA_3435	3865192	3866565	+	TolR	identified by match to protein family HMM PF01618	gene	gene3433	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3435
AHA_3436	AHA_3436		AHA_3436	3866576	3867103	+	TonB system transport protein ExbB2	identified by match to protein family HMM PF01618	gene	gene3434	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3436
AHA_3437	AHA_3437		AHA_3437	3867171	3867578	+	biopolymer transport exbD2 protein	identified by match to protein family HMM PF02472	gene	gene3435	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3437
AHA_3438	AHA_3438		AHA_3438	3867712	3868230	+	periplasmic protein TonB2	identified by match to protein family HMM TIGR01352	gene	gene3436	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3438
AHA_3439	AHA_3439		AHA_3439	3868242	3869477	+	TPR-repeat-containing protein	identified by match to protein family HMM PF00515%3B match to protein family HMM PF07719	gene	gene3437	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3439
AHA_3440	AHA_3440		AHA_3440	3869902	3872904	-	chitodextrinase	identified by match to protein family HMM PF00704%3B match to protein family HMM PF02839%3B match to protein family HMM PF06483	gene	gene3438	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3440
AHA_3441	AHA_3441		AHA_3441	3873435	3875579	+	nuclease	identified by match to protein family HMM PF03372	gene	gene3439	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3441
AHA_3442	AHA_3442		AHA_3442	3875715	3875790	-	tRNA-Ala		tRNA	gene3440	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3442
AHA_3443	AHA_3443		AHA_3443	3875825	3875900	-	tRNA-Ala		tRNA	gene3441	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3443
AHA_3444	AHA_3444		AHA_3444	3875949	3876024	-	tRNA-Ala		tRNA	gene3442	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3444
AHA_3445	AHA_3445		AHA_3445	3876088	3876163	-	tRNA-Ala		tRNA	gene3443	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3445
AHA_3446	AHA_3446		AHA_3446	3876192	3876267	-	tRNA-Ala		tRNA	gene3444	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3446
AHA_3447	AHA_3447	gltX	gltX	3876505	3877920	-	glutamyl-tRNA synthetase	identified by match to protein family HMM PF00749%3B match to protein family HMM TIGR00464	gene	gene3445	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3447
AHA_3448	AHA_3448		AHA_3448	3878112	3880283	+	methyl-accepting chemotaxis transducer	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3446	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3448
AHA_3449	AHA_3449		AHA_3449	3880382	3881050	+	opacity-associated protein A	identified by match to protein family HMM PF04225	gene	gene3447	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3449
AHA_3450	AHA_3450		AHA_3450	3881323	3881532	+	conserved domain protein	identified by match to protein family HMM PF00313	gene	gene3448	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3450
AHA_3451	AHA_3451		AHA_3451	3881802	3881881	-	tRNA-OTHER		pseudogenic_tRNA	gene3449	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3451
AHA_3452	AHA_3452		AHA_3452	3881945	3882020	-	tRNA-Gly		tRNA	gene3450	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3452
AHA_3453	AHA_3453		AHA_3453	3882045	3882120	-	tRNA-Gly		tRNA	gene3451	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3453
AHA_3454	AHA_3454		AHA_3454	3882145	3882220	-	tRNA-Gly		tRNA	gene3452	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3454
AHA_3455	AHA_3455		AHA_3455	3882245	3882320	-	tRNA-Gly		tRNA	gene3453	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3455
AHA_3456	AHA_3456		AHA_3456	3882345	3882420	-	tRNA-Gly		tRNA	gene3454	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3456
AHA_3457	AHA_3457		AHA_3457	3882454	3882529	-	tRNA-Gly		tRNA	gene3455	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3457
AHA_3458	AHA_3458		AHA_3458	3882555	3882630	-	tRNA-Gly		tRNA	gene3456	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3458
AHA_3459	AHA_3459	orn	orn	3882808	3883353	-	oligoribonuclease	identified by match to protein family HMM PF00929	gene	gene3457	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3459
AHA_3460	AHA_3460	rsgA	rsgA	3883400	3884479	+	ribosome small subunit-dependent GTPase A	identified by match to protein family HMM PF03193%3B match to protein family HMM TIGR00157	gene	gene3458	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3460
AHA_3461	AHA_3461	psd	psd	3884385	3885380	+	phosphatidylserine decarboxylase	identified by match to protein family HMM PF02666%3B match to protein family HMM TIGR00163	gene	gene3459	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3461
AHA_3462	AHA_3462		AHA_3462	3885377	3885628	+	conserved hypothetical protein	identified by similarity to GB:CAG21999.1	gene	gene3460	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3462
AHA_3463	AHA_3463		AHA_3463	3885633	3885884	+	conserved hypothetical protein		gene	gene3461	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3463
AHA_3464	AHA_3464		AHA_3464	3885887	3886285	+	conserved hypothetical protein		gene	gene3462	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3464
AHA_3465	AHA_3465		AHA_3465	3886398	3886967	-	conserved hypothetical protein	identified by match to protein family HMM PF04224	gene	gene3463	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3465
AHA_3466	AHA_3466		AHA_3466	3887010	3887444	-	carboxymuconolactone decarboxylase family protein	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene3464	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3466
AHA_3467	AHA_3467		AHA_3467	3887567	3888370	+	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene3465	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3467
AHA_3468	AHA_3468		AHA_3468	3888431	3888889	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3466	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3468
AHA_3469	AHA_3469		AHA_3469	3889097	3891070	+	sensory box/GGDEF domain/eal domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene3467	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3469
AHA_3470	AHA_3470		AHA_3470	3891139	3891645	-	conserved hypothetical protein	identified by match to protein family HMM PF06877	gene	gene3468	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3470
AHA_3471	AHA_3471		AHA_3471	3891909	3894185	+	immune inhibitor A	identified by match to protein family HMM PF05547	gene	gene3469	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3471
AHA_3472	AHA_3472		AHA_3472	3894370	3894445	+	tRNA-Phe		tRNA	gene3470	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3472
AHA_3473	AHA_3473		AHA_3473	3894450	3894525	+	tRNA-Asn		tRNA	gene3471	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3473
AHA_3474	AHA_3474		AHA_3474	3894569	3894703	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3472	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3474
AHA_3475	AHA_3475		AHA_3475	3894929	3896206	+	proline iminopeptidase	identified by match to protein family HMM PF00561	gene	gene3473	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3475
AHA_3476	AHA_3476		AHA_3476	3896306	3899866	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005%3B match to protein family HMM PF00664	gene	gene3474	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3476
AHA_3477	AHA_3477		AHA_3477	3899922	3900164	-	conserved domain protein	identified by match to protein family HMM PF06004	gene	gene3475	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3477
AHA_3478	AHA_3478		AHA_3478	3900246	3901421	-	extracellular alkaline serine protease	identified by match to protein family HMM PF00082	gene	gene3476	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3478
AHA_3479	AHA_3479		AHA_3479	3901541	3902833	-	putative thiosulfate sulfurtransferase		gene	gene3477	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3479
AHA_3480	AHA_3480		AHA_3480	3902862	3903794	-	thermolabile glutaminase	identified by match to protein family HMM PF04960	gene	gene3478	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3480
AHA_3481	AHA_3481		AHA_3481	3903907	3904239	-	conserved hypothetical protein	identified by match to protein family HMM PF04320	gene	gene3479	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3481
AHA_3482	AHA_3482	trmB	trmB	3904254	3904949	-	tRNA (guanine-N(7)-)-methyltransferase	identified by match to protein family HMM PF02390%3B match to protein family HMM TIGR00091	gene	gene3480	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3482
AHA_3483	AHA_3483		AHA_3483	3905316	3906383	+	aminopeptidase Y	identified by match to protein family HMM PF01546%3B match to protein family HMM PF04389	gene	gene3481	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3483
AHA_3484	AHA_3484		AHA_3484	3906566	3907747	+	aminotransferase%2C classes I and II	identified by match to protein family HMM PF00155	gene	gene3482	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3484
AHA_3485	AHA_3485		AHA_3485	3907812	3909344	-	Rtn protein	identified by match to protein family HMM PF00563	gene	gene3483	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3485
AHA_3486	AHA_3486		AHA_3486	3909647	3910552	+	conserved hypothetical protein	identified by match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01777	gene	gene3484	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3486
AHA_3487	AHA_3487		AHA_3487	3910646	3913093	-	ABC-type transport system%2C permease component	identified by match to protein family HMM PF02687	gene	gene3485	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3487
AHA_3488	AHA_3488		AHA_3488	3913090	3913815	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3486	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3488
AHA_3489	AHA_3489		AHA_3489	3913814	3914413	+	acyl-CoA thioesterase I	identified by match to protein family HMM PF00657	gene	gene3487	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3489
AHA_3490	AHA_3490		AHA_3490	3914497	3915441	-	chemotaxis protein CheV	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584	gene	gene3488	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3490
AHA_3491	AHA_3491		AHA_3491	3915737	3930880	-	flagellin hook IN motif family	identified by match to protein family HMM PF00092%3B match to protein family HMM PF00353%3B match to protein family HMM TIGR01965	gene	gene3489	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3491
AHA_3492	AHA_3492		AHA_3492	3931109	3932770	-	putative membrane protein	identified by match to protein family HMM PF02080%3B match to protein family HMM PF06826%3B match to protein family HMM TIGR01625	gene	gene3490	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3492
AHA_3493	AHA_3493		AHA_3493	3932889	3933524	-	hemolysin III	identified by match to protein family HMM PF03006%3B match to protein family HMM TIGR01065	gene	gene3491	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3493
AHA_3494	AHA_3494		AHA_3494	3933748	3935253	+	group II decarboxylase	identified by match to protein family HMM PF00282	gene	gene3492	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3494
AHA_3495	AHA_3495	ispZ	ispZ	3935358	3935909	+	intracellular septation protein A	identified by match to protein family HMM PF04279%3B match to protein family HMM TIGR00997	gene	gene3493	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3495
AHA_3496	AHA_3496		AHA_3496	3935935	3936231	+	YciI domain protein	identified by match to protein family HMM PF03795	gene	gene3494	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3496
AHA_3497	AHA_3497	cysQ-2	cysQ-2	3936313	3937104	-	3'(2')%2C5'-bisphosphate nucleotidase	identified by match to protein family HMM PF00459%3B match to protein family HMM TIGR01331	gene	gene3495	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3497
AHA_3498	AHA_3498		AHA_3498	3937251	3937571	+	ComEA protein	identified by match to protein family HMM PF00633%3B match to protein family HMM TIGR00426	gene	gene3496	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3498
AHA_3499	AHA_3499	galU	galU	3937685	3938578	+	UTP-glucose-1-phosphate uridylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR01099	gene	gene3497	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3499
AHA_3500	AHA_3500		AHA_3500	3938792	3940189	+	dipeptide/tripeptide permease	identified by match to protein family HMM PF00854%3B match to protein family HMM PF07690%3B match to protein family HMM TIGR00924	gene	gene3498	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3500
AHA_3501	AHA_3501		AHA_3501	3940263	3941234	-	response regulator receiver domain	identified by match to protein family HMM PF00072	gene	gene3499	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3501
AHA_3502	AHA_3502		AHA_3502	3941560	3943155	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3500	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3502
AHA_3503	AHA_3503		AHA_3503	3941575	3942252	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3501	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3503
AHA_3504	AHA_3504		AHA_3504	3942322	3943176	+	DNA replication protein%2C putative		gene	gene3502	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3504
AHA_3505	AHA_3505		AHA_3505	3943305	3943940	+	NAD dependent epimerase/dehydratase family	identified by match to protein family HMM PF01370	gene	gene3503	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3505
AHA_3506	AHA_3506		AHA_3506	3944051	3945247	-	ABC-type multidrug transport system%2C permease component	identified by match to protein family HMM PF01061	gene	gene3504	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3506
AHA_3507	AHA_3507		AHA_3507	3945351	3946487	-	ABC-type multidrug transport system%2C permease component		gene	gene3505	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3507
AHA_3508	AHA_3508		AHA_3508	3946487	3947491	-	membrane-fusion protein	identified by match to protein family HMM PF00529	gene	gene3506	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3508
AHA_3509	AHA_3509		AHA_3509	3947565	3948923	-	outer membrane efflux protein	identified by match to protein family HMM PF02321	gene	gene3507	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3509
AHA_3510	AHA_3510		AHA_3510	3949262	3950227	+	tRNA-dihydrouridine synthase B	identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00737	gene	gene3508	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3510
AHA_3511	AHA_3511	fis	fis	3950253	3950549	+	DNA-binding protein Fis	identified by similarity to SP:P0A6R3%3B match to protein family HMM PF02954	gene	gene3509	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3511
AHA_3512	AHA_3512		AHA_3512	3950619	3951251	-	transporter%2C LysE family	identified by match to protein family HMM PF01810	gene	gene3510	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3512
AHA_3513	AHA_3513	rrfG	rrfG	3951574	3951691	-	5S ribosomal RNA		rRNA	gene3511	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3513
AHA_3514	AHA_3514	rrlG	rrlG	3951807	3954702	-	23S ribosomal RNA		rRNA	gene3512	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3514
AHA_3515	AHA_3515		AHA_3515	3954933	3955008	-	tRNA-Glu		tRNA	gene3513	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3515
AHA_3516	AHA_3516	rrsG	rrsG	3955213	3956749	-	16S ribosomal RNA		rRNA	gene3514	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3516
AHA_3517	AHA_3517		AHA_3517	3957236	3957640	-	HesB family protein	identified by match to protein family HMM PF01521%3B match to protein family HMM TIGR00049	gene	gene3515	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3517
AHA_3518	AHA_3518		AHA_3518	3957677	3958372	-	conserved hypothetical protein		gene	gene3516	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3518
AHA_3519	AHA_3519		AHA_3519	3958459	3959853	-	H(+)/Cl(-) exchange transporter ClcA	identified by match to protein family HMM PF00654	gene	gene3517	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3519
AHA_3520	AHA_3520	hemL	hemL	3960076	3961362	+	glutamate-1-semialdehyde-2%2C1-aminomutase	identified by match to protein family HMM PF00202%3B match to protein family HMM TIGR00713	gene	gene3518	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3520
AHA_3521	AHA_3521		AHA_3521	3961572	3962387	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3519	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3521
AHA_3522	AHA_3522		AHA_3522	3962448	3963350	-	putative membrane protein		gene	gene3520	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3522
AHA_3523	AHA_3523		AHA_3523	3963607	3964329	-	PAP2 family protein	identified by match to protein family HMM PF01569	gene	gene3521	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3523
AHA_3524	AHA_3524		AHA_3524	3964517	3965032	+	conserved hypothetical protein		gene	gene3522	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3524
AHA_3525	AHA_3525		AHA_3525	3965108	3966688	-	response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01966	gene	gene3523	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3525
AHA_3526	AHA_3526		AHA_3526	3966803	3967684	-	transcriptional regulators%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3524	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3526
AHA_3527	AHA_3527		AHA_3527	3967841	3968305	+	multidrug resistance protein%2C SMR family	identified by match to protein family HMM PF00893	gene	gene3525	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3527
AHA_3528	AHA_3528		AHA_3528	3968293	3968613	+	multidrug resistance protein%2C SMR family	identified by match to protein family HMM PF00893	gene	gene3526	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3528
AHA_3529	AHA_3529		AHA_3529	3968713	3969114	-	glyoxylase I family protein	identified by match to protein family HMM PF00903	gene	gene3527	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3529
AHA_3530	AHA_3530	mrcB	mrcB	3969157	3971478	-	penicillin-binding protein 1B	identified by match to protein family HMM PF00905%3B match to protein family HMM PF00912%3B match to protein family HMM TIGR02071	gene	gene3528	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3530
AHA_3531	AHA_3531	hrpB	hrpB	3971730	3974900	-	ATP-dependent helicase HrpB	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04408%3B match to protein family HMM TIGR01970	gene	gene3529	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3531
AHA_3532	AHA_3532		AHA_3532	3974322	3974861	+	2'-5' RNA ligase	identified by match to protein family HMM PF02834%3B match to protein family HMM TIGR02258	gene	gene3530	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3532
AHA_3533	AHA_3533	sfsA	sfsA	3974904	3975647	+	sugar fermentation stimulation protein	identified by match to protein family HMM PF03749%3B match to protein family HMM TIGR00230	gene	gene3531	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3533
AHA_3534	AHA_3534	dksA	dksA	3975767	3976216	+	RNA polymerase-binding protein DksA	identified by match to protein family HMM PF01258%3B match to protein family HMM TIGR02420	gene	gene3532	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3534
AHA_3535	AHA_3535		AHA_3535	3976336	3977238	+	glutamyl-Q tRNA(Asp) synthetase	identified by match to protein family HMM PF00749	gene	gene3533	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3535
AHA_3536	AHA_3536		AHA_3536	3977560	3979059	+	poly(A) polymerase	identified by match to protein family HMM PF01743%3B match to protein family HMM TIGR01942	gene	gene3534	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3536
AHA_3537	AHA_3537	folK-1	folK-1	3979071	3979580	+	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	identified by similarity to SP:P26281%3B match to protein family HMM PF01288%3B match to protein family HMM TIGR01498	gene	gene3535	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3537
AHA_3538	AHA_3538	panB	panB	3979577	3980371	+	3-methyl-2-oxobutanoate hydroxymethyltransferase	identified by match to protein family HMM PF02548%3B match to protein family HMM TIGR00222	gene	gene3536	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3538
AHA_3539	AHA_3539	panC	panC	3980559	3981416	+	pantoate--beta-alanine ligase	identified by match to protein family HMM PF02569%3B match to protein family HMM TIGR00018%3B match to protein family HMM TIGR00125	gene	gene3537	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3539
AHA_3540	AHA_3540		AHA_3540	3981481	3982008	-	conserved hypothetical protein	identified by match to protein family HMM PF00581	gene	gene3538	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3540
AHA_3541	AHA_3541		AHA_3541	3982010	3982450	-	methylamine utilization protein-like protein		gene	gene3539	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3541
AHA_3542	AHA_3542		AHA_3542	3982752	3983534	-	activator of (R)-2-hydroxyglutaryl-CoA dehydratase	identified by match to protein family HMM PF01869%3B match to protein family HMM TIGR00241	gene	gene3540	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3542
AHA_3543	AHA_3543		AHA_3543	3983544	3984620	-	2-hydroxyglutaryl-CoA dehydratase%2C D-component	identified by match to protein family HMM PF06050	gene	gene3541	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3543
AHA_3544	AHA_3544		AHA_3544	3984930	3985703	-	ABC transporter%2C permease protein	identified by match to protein family HMM PF01061	gene	gene3542	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3544
AHA_3545	AHA_3545		AHA_3545	3985700	3986617	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3543	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3545
AHA_3546	AHA_3546	hpt	hpt	3986729	3987259	-	hypoxanthine phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR01203	gene	gene3544	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3546
AHA_3547	AHA_3547		AHA_3547	3987460	3988074	+	LitR%2C transcriptional regulator	identified by match to protein family HMM PF00440	gene	gene3545	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3547
AHA_3548	AHA_3548		AHA_3548	3988149	3988760	-	3-octaprenyl-4-hydroxybenzoate decarboxylase UbiX	identified by match to protein family HMM PF02441%3B match to protein family HMM TIGR00421	gene	gene3546	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3548
AHA_3549	AHA_3549	mpl	mpl	3988757	3990127	-	UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01081	gene	gene3547	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3549
AHA_3550	AHA_3550	ppa	ppa	3990306	3990836	+	inorganic pyrophosphatase	identified by match to protein family HMM PF00719	gene	gene3548	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3550
AHA_3551	AHA_3551		AHA_3551	3990862	3991170	-	conserved hypothetical protein		gene	gene3549	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3551
AHA_3552	AHA_3552		AHA_3552	3991145	3991243	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3550	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3552
AHA_3553	AHA_3553		AHA_3553	3991349	3992227	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3551	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3553
AHA_3554	AHA_3554		AHA_3554	3992485	3993027	+	conserved hypothetical protein	identified by match to protein family HMM TIGR01626	gene	gene3552	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3554
AHA_3555	AHA_3555		AHA_3555	3993072	3993362	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3553	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3555
AHA_3556	AHA_3556		AHA_3556	3993398	3993964	+	conserved hypothetical protein		gene	gene3554	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3556
AHA_3557	AHA_3557		AHA_3557	3993969	3994658	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3555	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3557
AHA_3558	AHA_3558		AHA_3558	3994652	3995899	+	ABC-type antimicrobial peptide transport system%2C permease component	identified by match to protein family HMM PF02687	gene	gene3556	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3558
AHA_3559	AHA_3559		AHA_3559	3995929	3996408	+	conserved hypothetical protein		gene	gene3557	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3559
AHA_3560	AHA_3560		AHA_3560	3996641	3997414	+	conserved hypothetical protein		gene	gene3558	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3560
AHA_3561	AHA_3561		AHA_3561	3997678	3999306	+	aerotaxis receptor Aer	identified by similarity to GB:AAD22405.1%3B match to protein family HMM PF00015%3B match to protein family HMM TIGR00229	gene	gene3559	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3561
AHA_3562	AHA_3562		AHA_3562	4000360	4001250	+	alpha/beta superfamily hydrolase		gene	gene3560	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3562
AHA_3563	AHA_3563		AHA_3563	4001682	4003133	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3561	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3563
AHA_3564	AHA_3564	cysC	cysC	4003214	4003807	-	adenylylsulfate kinase	identified by match to protein family HMM PF01583%3B match to protein family HMM TIGR00455	gene	gene3562	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3564
AHA_3565	AHA_3565		AHA_3565	4003954	4005678	-	transporter%2C divalent anion:sodium symporter family	identified by match to protein family HMM PF02080%3B match to protein family HMM PF03600	gene	gene3563	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3565
AHA_3566	AHA_3566		AHA_3566	4005683	4007110	-	sulfate adenylyltransferase subunit 1	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR02034	gene	gene3564	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3566
AHA_3567	AHA_3567		AHA_3567	4007135	4008043	-	sulfate adenylyltransferase subunit 2	identified by match to protein family HMM PF01507%3B match to protein family HMM TIGR02039	gene	gene3565	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3567
AHA_3568	AHA_3568		AHA_3568	4008152	4009564	-	siroheme synthase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470	gene	gene3566	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3568
AHA_3569	AHA_3569		AHA_3569	4009762	4010682	+	membrane protease subunits	identified by match to protein family HMM PF01145	gene	gene3567	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3569
AHA_3570	AHA_3570		AHA_3570	4010679	4011134	+	nodulation efficiency family protein	identified by match to protein family HMM PF01957	gene	gene3568	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3570
AHA_3571	AHA_3571		AHA_3571	4011217	4011627	-	CBS domains protein	identified by match to protein family HMM PF00571	gene	gene3569	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3571
AHA_3572	AHA_3572		AHA_3572	4011781	4013691	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3570	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3572
AHA_3573	AHA_3573		AHA_3573	4013702	4014145	+	conserved hypothetical protein		gene	gene3571	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3573
AHA_3574	AHA_3574		AHA_3574	4014139	4014993	+	protein involved in external DNA uptake	identified by match to protein family HMM PF04378	gene	gene3572	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3574
AHA_3575	AHA_3575		AHA_3575	4015044	4015973	-	transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3573	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3575
AHA_3576	AHA_3576		AHA_3576	4016083	4016682	+	acyl carrier protein phosphodiesterase	identified by match to protein family HMM PF02525%3B match to protein family HMM PF03358	gene	gene3574	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3576
AHA_3577	AHA_3577		AHA_3577	4016779	4017054	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3575	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3577
AHA_3578	AHA_3578		AHA_3578	4017172	4017534	+	hypothetical membrane protein		gene	gene3576	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3578
AHA_3579	AHA_3579		AHA_3579	4017870	4018298	+	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene3577	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3579
AHA_3580	AHA_3580		AHA_3580	4018374	4020203	+	ATP-dependent DNA helicase RecG	identified by match to protein family HMM PF04326	gene	gene3578	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3580
AHA_3581	AHA_3581		AHA_3581	4020513	4021343	+	probable hydrolase protein%2C putative	identified by match to protein family HMM PF00561	gene	gene3579	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3581
AHA_3582	AHA_3582		AHA_3582	4021377	4022486	-	conserved hypothetical protein		gene	gene3580	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3582
AHA_3583	AHA_3583	putP	putP	4022787	4024304	-	sodium/proline symporter	identified by match to protein family HMM PF00474%3B match to protein family HMM TIGR00813%3B match to protein family HMM TIGR02121	gene	gene3581	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3583
AHA_3584	AHA_3584		AHA_3584	4024593	4025627	-	LysM domain protein	identified by match to protein family HMM PF03734	gene	gene3582	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3584
AHA_3585	AHA_3585		AHA_3585	4025707	4026948	-	mechanosensitive ion channel	identified by match to protein family HMM PF00924	gene	gene3583	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3585
AHA_3586	AHA_3586	ackA-2	ackA-2	4027082	4028281	-	acetate kinase	identified by match to protein family HMM PF00871%3B match to protein family HMM TIGR00016	gene	gene3584	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3586
AHA_3587	AHA_3587		AHA_3587	4028456	4028926	-	conserved hypothetical protein	identified by similarity to GB:CAG73302.1%3B match to protein family HMM PF04074%3B match to protein family HMM TIGR00022	gene	gene3585	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3587
AHA_3588	AHA_3588		AHA_3588	4029237	4030343	-	acyltransferase family protein	identified by match to protein family HMM PF01553	gene	gene3586	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3588
AHA_3589	AHA_3589		AHA_3589	4030504	4032153	-	blue copper oxidase CueO	identified by match to protein family HMM PF07731%3B match to protein family HMM PF07732%3B match to protein family HMM TIGR01409	gene	gene3587	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3589
AHA_3590	AHA_3590		AHA_3590	4032410	4033102	-	aspartate racemase	identified by match to protein family HMM PF01177%3B match to protein family HMM TIGR00035	gene	gene3588	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3590
AHA_3591	AHA_3591		AHA_3591	4033247	4033837	-	lysine exporter protein	identified by match to protein family HMM PF01810	gene	gene3589	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3591
AHA_3592	AHA_3592		AHA_3592	4033899	4036052	+	transcriptional regulator%2C GntR family/aminotransferase%2C classes I and II family protein	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene3590	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3592
AHA_3593	AHA_3593		AHA_3593	4036095	4036559	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3591	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3593
AHA_3594	AHA_3594		AHA_3594	4036620	4038719	+	putative exported protein		gene	gene3592	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3594
AHA_3595	AHA_3595		AHA_3595	4039411	4041048	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3594	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3595
AHA_3596	AHA_3596		AHA_3596	4038689	4039414	+	putative exported protein		gene	gene3593	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3596
AHA_3597	AHA_3597		AHA_3597	4039525	4041150	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3595	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3597
AHA_3598	AHA_3598		AHA_3598	4041171	4042484	-	sodium-dependent symporter family protein	identified by match to protein family HMM PF00209	gene	gene3596	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3598
AHA_3599	AHA_3599		AHA_3599	4042708	4043655	+	conserved hypothetical protein		gene	gene3597	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3599
AHA_3600	AHA_3600		AHA_3600	4043656	4044969	-	sodium-dependent transporter	identified by match to protein family HMM PF00209	gene	gene3598	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3600
AHA_3601	AHA_3601		AHA_3601	4045184	4046023	-	isopenicillin N synthase	identified by match to protein family HMM PF03171	gene	gene3599	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3601
AHA_3602	AHA_3602		AHA_3602	4046232	4046795	+	ATPase involved in DNA repair		gene	gene3600	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3602
AHA_3603	AHA_3603		AHA_3603	4046848	4047669	-	phosphatase YbhA	identified by match to protein family HMM PF00702%3B match to protein family HMM PF05116%3B match to protein family HMM TIGR00099%3B match to protein family HMM TIGR01484	gene	gene3601	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3603
AHA_3604	AHA_3604		AHA_3604	4047972	4049213	-	probable MFS transporter%2C putative	identified by match to protein family HMM PF07690	gene	gene3602	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3604
AHA_3605	AHA_3605		AHA_3605	4049380	4050000	+	conserved hypothetical protein		gene	gene3603	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3605
AHA_3606	AHA_3606		AHA_3606	4050309	4050785	+	Bkd operon transcriptional regulator	identified by match to protein family HMM PF01037	gene	gene3604	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3606
AHA_3607	AHA_3607		AHA_3607	4050875	4051192	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3605	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3607
AHA_3608	AHA_3608		AHA_3608	4051338	4051565	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3606	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3608
AHA_3609	AHA_3609		AHA_3609	4051599	4052093	-	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene3607	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3609
AHA_3610	AHA_3610		AHA_3610	4052137	4052613	+	organic hydroperoxide reductase	identified by match to protein family HMM PF02566	gene	gene3608	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3610
AHA_3611	AHA_3611		AHA_3611	4052696	4053700	+	probable NADP-dependent oxidoreductase p1	identified by match to protein family HMM PF00107	gene	gene3609	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3611
AHA_3612	AHA_3612		AHA_3612	4053807	4054250	+	nudix hydrolase 1	identified by match to protein family HMM PF00293	gene	gene3610	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3612
AHA_3613	AHA_3613		AHA_3613	4054477	4055628	+	chromate transport protein ChrA	identified by match to protein family HMM PF02417%3B match to protein family HMM TIGR00937	gene	gene3611	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3613
AHA_3614	AHA_3614	msrB	msrB	4055709	4056101	-	methionine-R-sulfoxide reductase	identified by match to protein family HMM PF01641%3B match to protein family HMM TIGR00357	gene	gene3612	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3614
AHA_3615	AHA_3615	glgX-2	glgX-2	4056158	4058299	-	glycogen debranching enzyme GlgX	identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR02100	gene	gene3613	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3615
AHA_3616	AHA_3616	glgB	glgB	4058299	4060476	-	1%2C4-alpha-glucan branching enzyme	identified by match to protein family HMM PF00128%3B match to protein family HMM PF02922%3B match to protein family HMM TIGR01515	gene	gene3614	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3616
AHA_3617	AHA_3617	malQ	malQ	4060559	4062835	-	4-alpha-glucanotransferase	identified by match to protein family HMM PF02446%3B match to protein family HMM TIGR00217	gene	gene3615	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3617
AHA_3618	AHA_3618	gap-2	gap-2	4063095	4064090	+	glyceraldehyde-3-phosphate dehydrogenase%2C type I	identified by match to protein family HMM PF00044%3B match to protein family HMM PF02800%3B match to protein family HMM TIGR01534	gene	gene3616	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3618
AHA_3619	AHA_3619		AHA_3619	4064206	4065072	+	aldose 1-epimerase family protein	identified by match to protein family HMM PF01263	gene	gene3617	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3619
AHA_3620	AHA_3620	nadA	nadA	4065142	4066176	-	quinolinate synthetase complex%2C A subunit	identified by match to protein family HMM PF02445%3B match to protein family HMM TIGR00550	gene	gene3618	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3620
AHA_3621	AHA_3621		AHA_3621	4066356	4068461	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3619	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3621
AHA_3622	AHA_3622		AHA_3622	4068512	4068587	-	tRNA-Val		tRNA	gene3620	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3622
AHA_3623	AHA_3623		AHA_3623	4068605	4068680	-	tRNA-Lys		tRNA	gene3621	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3623
AHA_3624	AHA_3624		AHA_3624	4068703	4068778	-	tRNA-Val		tRNA	gene3622	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3624
AHA_3625	AHA_3625		AHA_3625	4068796	4068871	-	tRNA-Lys		tRNA	gene3623	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3625
AHA_3626	AHA_3626		AHA_3626	4068895	4068970	-	tRNA-Val		tRNA	gene3624	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3626
AHA_3627	AHA_3627		AHA_3627	4068987	4069062	-	tRNA-Lys		tRNA	gene3625	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3627
AHA_3628	AHA_3628		AHA_3628	4069087	4069162	-	tRNA-Val		tRNA	gene3626	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3628
AHA_3629	AHA_3629		AHA_3629	4069179	4069254	-	tRNA-Lys		tRNA	gene3627	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3629
AHA_3630	AHA_3630		AHA_3630	4069277	4069352	-	tRNA-Val		tRNA	gene3628	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3630
AHA_3631	AHA_3631		AHA_3631	4069370	4069445	-	tRNA-Lys		tRNA	gene3629	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3631
AHA_3632	AHA_3632		AHA_3632	4069469	4069544	-	tRNA-Val		tRNA	gene3630	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3632
AHA_3633	AHA_3633		AHA_3633	4069566	4069641	-	tRNA-Lys		tRNA	gene3631	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3633
AHA_3634	AHA_3634		AHA_3634	4069690	4069765	-	tRNA-Val		tRNA	gene3632	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3634
AHA_3635	AHA_3635		AHA_3635	4069797	4069872	-	tRNA-Lys		tRNA	gene3633	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3635
AHA_3636	AHA_3636		AHA_3636	4070047	4070859	-	TPR domain protein	identified by match to protein family HMM TIGR02795	gene	gene3634	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3636
AHA_3637	AHA_3637	pal	pal	4071009	4071533	-	peptidoglycan-associated lipoprotein	identified by match to protein family HMM PF00691%3B match to protein family HMM TIGR02802	gene	gene3635	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3637
AHA_3638	AHA_3638	tolB	tolB	4071583	4072908	-	Tol-Pal system beta propeller repeat protein TolB	identified by similarity to SP:P0A855%3B match to protein family HMM PF04052%3B match to protein family HMM PF07676%3B match to protein family HMM TIGR02800	gene	gene3636	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3638
AHA_3639	AHA_3639	tolA	tolA	4073003	4074166	-	protein TolA	identified by match to protein family HMM PF06519%3B match to protein family HMM TIGR02794	gene	gene3637	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3639
AHA_3640	AHA_3640	tolR	tolR	4074172	4074618	-	protein TolR	identified by match to protein family HMM PF02472%3B match to protein family HMM TIGR02801	gene	gene3638	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3640
AHA_3641	AHA_3641	tolQ	tolQ	4074618	4075307	-	protein TolQ	identified by match to protein family HMM PF01618%3B match to protein family HMM TIGR02796	gene	gene3639	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3641
AHA_3642	AHA_3642		AHA_3642	4075297	4075704	-	acyl-CoA thioester hydrolase YbgC	identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00051%3B match to protein family HMM TIGR02799	gene	gene3640	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3642
AHA_3643	AHA_3643		AHA_3643	4075810	4076166	-	protein YbgE		gene	gene3641	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3643
AHA_3644	AHA_3644		AHA_3644	4076108	4076224	-	cyd operon protein YbgT	identified by match to protein family HMM PF08173%3B match to protein family HMM TIGR02106	gene	gene3642	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3644
AHA_3645	AHA_3645	cydB-2	cydB-2	4076239	4077375	-	cytochrome d ubiquinol oxidase%2C subunit II	identified by match to protein family HMM PF02322%3B match to protein family HMM TIGR00203	gene	gene3643	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3645
AHA_3646	AHA_3646	cydA	cydA	4077388	4078944	-	cytochrome d ubiquinol oxidase%2C subunit I	identified by match to protein family HMM PF01654	gene	gene3644	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3646
AHA_3647	AHA_3647	ruvB	ruvB	4079881	4080891	-	Holliday junction DNA helicase RuvB	identified by match to protein family HMM PF00004%3B match to protein family HMM PF05491%3B match to protein family HMM PF05496%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00635	gene	gene3645	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3647
AHA_3648	AHA_3648	ruvA	ruvA	4080900	4081514	-	Holliday junction DNA helicase RuvA	identified by match to protein family HMM PF01330%3B match to protein family HMM PF07499%3B match to protein family HMM TIGR00084	gene	gene3646	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3648
AHA_3649	AHA_3649		AHA_3649	4081753	4083762	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3647	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3649
AHA_3650	AHA_3650	proS	proS	4083898	4085622	+	prolyl-tRNA synthetase	identified by match to protein family HMM PF00587%3B match to protein family HMM PF03129%3B match to protein family HMM PF04073%3B match to protein family HMM TIGR00409	gene	gene3648	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3650
AHA_3651	AHA_3651		AHA_3651	4085709	4086386	-	oxidoreductase%2C short-chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene3649	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3651
AHA_3652	AHA_3652		AHA_3652	4086451	4087080	-	conserved hypothetical protein		gene	gene3650	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3652
AHA_3653	AHA_3653		AHA_3653	4087176	4087616	-	transporter	identified by match to protein family HMM PF04314	gene	gene3651	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3653
AHA_3654	AHA_3654		AHA_3654	4087676	4088455	+	enoyl-CoA hydratase/isomerase family protein	identified by match to protein family HMM PF00378	gene	gene3652	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3654
AHA_3655	AHA_3655		AHA_3655	4088459	4088887	-	conserved hypothetical protein		gene	gene3653	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3655
AHA_3656	AHA_3656		AHA_3656	4089178	4089843	+	chloramphenicol acetyltransferase	identified by match to protein family HMM PF00132	gene	gene3654	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3656
AHA_3657	AHA_3657		AHA_3657	4089895	4090602	-	conserved hypothetical protein		gene	gene3655	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3657
AHA_3658	AHA_3658		AHA_3658	4090775	4092379	+	periplasmic murein peptide-binding protein	identified by match to protein family HMM PF00496	gene	gene3656	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3658
AHA_3659	AHA_3659		AHA_3659	4092384	4092803	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3657	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3659
AHA_3660	AHA_3660		AHA_3660	4092858	4093277	-	conserved hypothetical protein		gene	gene3658	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3660
AHA_3661	AHA_3661		AHA_3661	4093296	4093595	-	conserved hypothetical protein	identified by match to protein family HMM PF02594%3B match to protein family HMM TIGR00251	gene	gene3659	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3661
AHA_3662	AHA_3662		AHA_3662	4093595	4094146	-	integral membrane protein	identified by match to protein family HMM PF02325	gene	gene3660	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3662
AHA_3663	AHA_3663	proC	proC	4094187	4095011	-	pyrroline-5-carboxylate reductase	identified by match to protein family HMM PF01210%3B match to protein family HMM PF03446%3B match to protein family HMM PF03807%3B match to protein family HMM TIGR00112	gene	gene3661	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3663
AHA_3664	AHA_3664		AHA_3664	4095070	4095771	-	conserved hypothetical protein TIGR00044	identified by match to protein family HMM PF01168%3B match to protein family HMM TIGR00044	gene	gene3662	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3664
AHA_3665	AHA_3665		AHA_3665	4095811	4096845	+	twitching mobility protein	identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420	gene	gene3663	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3665
AHA_3666	AHA_3666		AHA_3666	4096874	4097983	+	twitching motility protein PilU	identified by match to protein family HMM PF00437%3B match to protein family HMM TIGR01420	gene	gene3664	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3666
AHA_3667	AHA_3667		AHA_3667	4098015	4098788	+	conserved hypothetical protein	identified by match to protein family HMM PF03883	gene	gene3665	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3667
AHA_3668	AHA_3668		AHA_3668	4098965	4100188	-	ATP-dependent RNA helicase SrmB	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271	gene	gene3666	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3668
AHA_3669	AHA_3669		AHA_3669	4100317	4101027	+	SmtA protein	identified by match to protein family HMM PF05175	gene	gene3667	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3669
AHA_3670	AHA_3670	brnQ-2	brnQ-2	4101219	4102526	+	branched-chain amino acid transport system II carrier protein	identified by match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene3668	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3670
AHA_3671	AHA_3671	brnQ-3	brnQ-3	4102863	4104197	+	branched-chain amino acid transport system II carrier protein	identified by similarity to SP:P37011%3B match to protein family HMM PF05525%3B match to protein family HMM TIGR00796	gene	gene3669	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3671
AHA_3672	AHA_3672		AHA_3672	4104268	4104531	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3670	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3672
AHA_3673	AHA_3673		AHA_3673	4104503	4104964	-	chemotaxis protein CheX	identified by match to protein family HMM PF04509	gene	gene3671	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3673
AHA_3674	AHA_3674	zur	zur	4104954	4105412	-	zinc uptake regulation protein	identified by similarity to SP:P32692%3B match to protein family HMM PF01475	gene	gene3672	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3674
AHA_3675	AHA_3675	dusA	dusA	4105551	4106537	+	tRNA-dihydrouridine synthase A	identified by match to protein family HMM PF01207%3B match to protein family HMM TIGR00742	gene	gene3673	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3675
AHA_3676	AHA_3676		AHA_3676	4106540	4106689	+	conserved hypothetical protein		gene	gene3674	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3676
AHA_3677	AHA_3677		AHA_3677	4106764	4107189	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3675	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3677
AHA_3678	AHA_3678		AHA_3678	4107291	4107587	-	DNA-binding protein HU-alpha	identified by match to protein family HMM PF00216	gene	gene3676	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3678
AHA_3679	AHA_3679	algQ	algQ	4107905	4108387	+	transcriptional regulatory protein AlgQ	identified by similarity to SP:P15275%3B match to protein family HMM PF04353	gene	gene3677	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3679
AHA_3680	AHA_3680		AHA_3680	4108489	4108869	+	type IV pilus assembly protein PilZ	identified by match to protein family HMM PF07238	gene	gene3678	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3680
AHA_3681	AHA_3681	radA	radA	4108941	4110305	-	DNA repair protein RadA	identified by match to protein family HMM TIGR00416	gene	gene3679	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3681
AHA_3682	AHA_3682		AHA_3682	4110406	4111956	+		type IV pilus assembly protein PilZ%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error%3B identified by match to protein family HMM PF07238	pseudogene	gene3680	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3682
AHA_3683	AHA_3683		AHA_3683	4111911	4112678	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3681	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3683
AHA_3684	AHA_3684		AHA_3684	4112807	4113712	-	esterase/lipase		gene	gene3682	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3684
AHA_3685	AHA_3685		AHA_3685	4113762	4115468	-	phosphoserine phosphatase	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR00338%3B match to protein family HMM TIGR01488	gene	gene3683	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3685
AHA_3686	AHA_3686		AHA_3686	4115555	4117801	+	histidine kinase-response regulator hybrid protein	identified by match to protein family HMM PF00989%3B match to protein family HMM PF00990%3B match to protein family HMM PF01590%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene3684	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3686
AHA_3687	AHA_3687	deoD-2	deoD-2	4117871	4118587	-	purine nucleoside phosphorylase	identified by match to protein family HMM PF01048%3B match to protein family HMM TIGR00107	gene	gene3685	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3687
AHA_3688	AHA_3688	deoB	deoB	4118665	4119873	-	phosphopentomutase	identified by match to protein family HMM PF01676%3B match to protein family HMM TIGR01696	gene	gene3686	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3688
AHA_3689	AHA_3689	deoA	deoA	4119888	4121219	-	thymidine phosphorylase	identified by match to protein family HMM PF00591%3B match to protein family HMM PF02885%3B match to protein family HMM PF07831%3B match to protein family HMM TIGR02643%3B match to protein family HMM TIGR02644	gene	gene3687	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3689
AHA_3690	AHA_3690	deoC-2	deoC-2	4121329	4122102	-	deoxyribose-phosphate aldolase	identified by match to protein family HMM PF01791%3B match to protein family HMM TIGR00126	gene	gene3688	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3690
AHA_3691	AHA_3691		AHA_3691	4122788	4124062	-	nucleoside transporter%2C NupC family	identified by match to protein family HMM PF01773%3B match to protein family HMM PF07662%3B match to protein family HMM PF07670%3B match to protein family HMM TIGR00804	gene	gene3689	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3691
AHA_3692	AHA_3692		AHA_3692	4124276	4125064	-	putative deoxyribonuclease	identified by match to protein family HMM PF01026	gene	gene3690	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3692
AHA_3693	AHA_3693		AHA_3693	4125105	4125722	+	prokaryotic N-terminal methylation motif family	identified by match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene3691	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3693
AHA_3694	AHA_3694	rumA-2	rumA-2	4126088	4127440	-	23S rRNA (uracil-5-)-methyltransferase RumA	identified by match to protein family HMM PF01938%3B match to protein family HMM PF05958%3B match to protein family HMM TIGR00479	gene	gene3692	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3694
AHA_3695	AHA_3695	amt	amt	4127775	4129211	-	ammonium transporter	identified by match to protein family HMM PF00909%3B match to protein family HMM TIGR00836	gene	gene3693	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3695
AHA_3696	AHA_3696		AHA_3696	4129664	4129749	-	tRNA-Leu		tRNA	gene3694	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3696
AHA_3697	AHA_3697		AHA_3697	4129799	4130413	+	proline-rich antigen	identified by match to protein family HMM PF06271	gene	gene3695	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3697
AHA_3698	AHA_3698		AHA_3698	4130568	4131638	-	putative permease	identified by match to protein family HMM PF03739	gene	gene3696	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3698
AHA_3699	AHA_3699		AHA_3699	4131780	4132886	-	putative permease	identified by match to protein family HMM PF03739	gene	gene3697	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3699
AHA_3700	AHA_3700	pepA	pepA	4133065	4134573	+	leucyl aminopeptidase	synonym: cytosol aminopeptidase%3B identified by similarity to SP:P68767%3B match to protein family HMM PF00883%3B match to protein family HMM PF02789	gene	gene3698	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3700
AHA_3701	AHA_3701		AHA_3701	4134736	4135191	+	DNA polymerase III%2C chi subunit	identified by match to protein family HMM PF04364	gene	gene3699	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3701
AHA_3702	AHA_3702	valS	valS	4135194	4138109	+	valyl-tRNA synthetase	identified by match to protein family HMM PF00133%3B match to protein family HMM TIGR00422	gene	gene3700	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3702
AHA_3703	AHA_3703		AHA_3703	4138122	4139588	+	CBS domain protein	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01595%3B match to protein family HMM PF03471	gene	gene3701	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3703
AHA_3704	AHA_3704		AHA_3704	4139607	4140272	+	DedA family protein		gene	gene3702	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3704
AHA_3705	AHA_3705		AHA_3705	4140412	4141239	+	D-alanyl-D-alanine carboxypeptidase family protein	identified by match to protein family HMM PF00768	gene	gene3703	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3705
AHA_3706	AHA_3706		AHA_3706	4141607	4141683	-	tRNA-Arg		tRNA	gene3704	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3706
AHA_3707	AHA_3707		AHA_3707	4141712	4141788	-	tRNA-Arg		tRNA	gene3705	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3707
AHA_3708	AHA_3708		AHA_3708	4141817	4141893	-	tRNA-Arg		tRNA	gene3706	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3708
AHA_3709	AHA_3709		AHA_3709	4141920	4141996	-	tRNA-Arg		tRNA	gene3707	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3709
AHA_3710	AHA_3710		AHA_3710	4142096	4142172	-	tRNA-Arg		tRNA	gene3708	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3710
AHA_3711	AHA_3711		AHA_3711	4142176	4142268	-	tRNA-Ser		tRNA	gene3709	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3711
AHA_3712	AHA_3712	csrA	csrA	4142483	4142671	-	carbon storage regulator	identified by similarity to SP:P69913%3B match to protein family HMM PF02599%3B match to protein family HMM TIGR00202	gene	gene3710	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3712
AHA_3713	AHA_3713		AHA_3713	4142765	4144012	-	asparate kinase%2C monofunctional class	identified by match to protein family HMM PF00696%3B match to protein family HMM PF01842%3B match to protein family HMM TIGR00656%3B match to protein family HMM TIGR00657	gene	gene3711	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3713
AHA_3714	AHA_3714	alaS	alaS	4144029	4146653	-	alanyl-tRNA synthetase	identified by match to protein family HMM PF01411%3B match to protein family HMM PF02272%3B match to protein family HMM PF07973%3B match to protein family HMM TIGR00344	gene	gene3712	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3714
AHA_3715	AHA_3715	recX	recX	4147104	4147604	-	regulatory protein RecX	identified by similarity to SP:P33596%3B match to protein family HMM PF02631	gene	gene3713	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3715
AHA_3716	AHA_3716	recA	recA	4147646	4148710	-	recA protein	identified by match to protein family HMM PF00154%3B match to protein family HMM TIGR02012	gene	gene3714	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3716
AHA_3717	AHA_3717		AHA_3717	4148790	4149281	-	CinA%2C C-terminal	identified by match to protein family HMM PF02464%3B match to protein family HMM TIGR00199	gene	gene3715	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3717
AHA_3718	AHA_3718	mutS	mutS	4149516	4152098	+	DNA mismatch repair protein MutS	identified by match to protein family HMM PF00488%3B match to protein family HMM PF01624%3B match to protein family HMM PF05188%3B match to protein family HMM PF05190%3B match to protein family HMM PF05192%3B match to protein family HMM TIGR01070	gene	gene3716	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3718
AHA_3719	AHA_3719		AHA_3719	4152192	4153790	-	transporter%2C betaine/carnitine/choline transporter (BCCT) family	identified by match to protein family HMM PF02028%3B match to protein family HMM TIGR00842	gene	gene3717	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3719
AHA_3720	AHA_3720		AHA_3720	4153800	4154327	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3718	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3720
AHA_3721	AHA_3721		AHA_3721	4154491	4154970	+	transcriptional regulator%2C MarR family	identified by match to protein family HMM PF01047	gene	gene3719	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3721
AHA_3722	AHA_3722		AHA_3722	4155019	4155600	-	protein of unknown function%2C DUF	identified by match to protein family HMM PF04222	gene	gene3720	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3722
AHA_3723	AHA_3723		AHA_3723	4155763	4156707	+	D-isomer specific 2-hydroxyacid dehydrogenase family protein	identified by match to protein family HMM PF02826	gene	gene3721	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3723
AHA_3724	AHA_3724		AHA_3724	4156774	4158111	-	metalloprotease%2C opacity-associated protein A family	identified by match to protein family HMM PF01551%3B match to protein family HMM PF04225	gene	gene3722	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3724
AHA_3725	AHA_3725		AHA_3725	4158372	4159664	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3723	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3725
AHA_3726	AHA_3726		AHA_3726	4160600	4161274	-	periplasmic protein		gene	gene3725	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3726
AHA_3727	AHA_3727		AHA_3727	4159664	4160605	+	immunogenic protein	identified by match to protein family HMM TIGR02122	gene	gene3724	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3727
AHA_3728	AHA_3728	znuA	znuA	4161360	4162274	-	zinc ABC transporter%2C periplasmic zinc-binding protein	identified by similarity to SP:P39172%3B match to protein family HMM PF01297	gene	gene3726	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3728
AHA_3729	AHA_3729	znuC	znuC	4162369	4163133	+	high-affinity zinc uptake ABC transporter%2C ATP-binding protein ZnuC	identified by similarity to SP:P0A9X1%3B match to protein family HMM PF00005	gene	gene3727	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3729
AHA_3730	AHA_3730	znuB	znuB	4163155	4163934	+	zinc uptake ABC transporter%2C permease protein ZnuB	identified by similarity to SP:P39832%3B match to protein family HMM PF00950%3B match to protein family HMM PF01032	gene	gene3728	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3730
AHA_3731	AHA_3731		AHA_3731	4164025	4164942	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3729	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3731
AHA_3732	AHA_3732		AHA_3732	4165034	4165891	+	transporter%2C drug/metabolite exporter family	identified by match to protein family HMM PF00892	gene	gene3730	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3732
AHA_3733	AHA_3733		AHA_3733	4165902	4166483	-	uracil-DNA glycosylase		gene	gene3731	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3733
AHA_3734	AHA_3734		AHA_3734	4167470	4168204	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3733	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3734
AHA_3735	AHA_3735	rarD-2	rarD-2	4166586	4167488	+	RarD protein	identified by match to protein family HMM PF00892%3B match to protein family HMM TIGR00688	gene	gene3732	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3735
AHA_3736	AHA_3736		AHA_3736	4168249	4168659	+	endo/excinuclease domain protein	identified by match to protein family HMM PF01541	gene	gene3734	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3736
AHA_3737	AHA_3737		AHA_3737	4168744	4168962	-	putative exported protein	identified by match to protein family HMM TIGR02975	gene	gene3735	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3737
AHA_3738	AHA_3738		AHA_3738	4169005	4169211	-	conserved domain protein	identified by match to protein family HMM PF04024	gene	gene3736	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3738
AHA_3739	AHA_3739		AHA_3739	4169214	4169876	-	phage shock protein A	identified by match to protein family HMM PF04012%3B match to protein family HMM TIGR02977	gene	gene3737	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3739
AHA_3740	AHA_3740	plsC	plsC	4170084	4170812	-	1-acyl-sn-glycerol-3-phosphate acyltransferase	identified by match to protein family HMM PF01553%3B match to protein family HMM TIGR00530	gene	gene3738	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3740
AHA_3741	AHA_3741		AHA_3741	4170989	4171369	+	membrane protein%2C suppressor for copper-sensitivity A		gene	gene3739	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3741
AHA_3742	AHA_3742		AHA_3742	4171353	4173467	+	membrane protein%2C suppressor for copper-sensitivity B	identified by match to protein family HMM PF02683	gene	gene3740	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3742
AHA_3743	AHA_3743		AHA_3743	4173478	4174233	+	secreted protein%2C suppressor for copper-sensitivity C	identified by match to protein family HMM PF01323	gene	gene3741	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3743
AHA_3744	AHA_3744		AHA_3744	4174245	4174397	+	suppression of copper sensitivity: lipoprotein modification in lgt mutants of E. coli		gene	gene3742	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3744
AHA_3745	AHA_3745		AHA_3745	4174473	4174928	+	suppressor for copper-sensitivity D	identified by match to protein family HMM PF00085	gene	gene3743	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3745
AHA_3746	AHA_3746		AHA_3746	4175115	4175492	+	DnaJ domain protein	identified by match to protein family HMM PF00226	gene	gene3744	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3746
AHA_3747	AHA_3747		AHA_3747	4175516	4176058	+	conserved hypothetical protein		gene	gene3745	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3747
AHA_3748	AHA_3748		AHA_3748	4176071	4176838	+	conserved hypothetical protein		gene	gene3746	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3748
AHA_3749	AHA_3749		AHA_3749	4176850	4177752	+	conserved hypothetical protein		gene	gene3747	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3749
AHA_3750	AHA_3750		AHA_3750	4177959	4178240	+	conserved hypothetical protein		gene	gene3748	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3750
AHA_3751	AHA_3751		AHA_3751	4178299	4178673	+	conserved hypothetical protein		gene	gene3749	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3751
AHA_3752	AHA_3752		AHA_3752	4178866	4180110	-	multidrug transporter homolog	identified by match to protein family HMM PF07690	gene	gene3750	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3752
AHA_3753	AHA_3753		AHA_3753	4180198	4181106	+	LysR-family transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3751	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3753
AHA_3754	AHA_3754		AHA_3754	4181200	4182282	-	conserved hypothetical protein		gene	gene3752	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3754
AHA_3755	AHA_3755	parC	parC	4182339	4184633	-	DNA topoisomerase IV%2C A subunit	identified by match to protein family HMM PF00521%3B match to protein family HMM PF03989%3B match to protein family HMM TIGR01062	gene	gene3753	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3755
AHA_3756	AHA_3756	parE	parE	4184717	4186612	-	DNA topoisomerase IV%2C B subunit	identified by match to protein family HMM PF00204%3B match to protein family HMM PF00986%3B match to protein family HMM PF02518%3B match to protein family HMM TIGR01055	gene	gene3754	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3756
AHA_3757	AHA_3757		AHA_3757	4186727	4188736	-	hypothetical transport protein YdhK	identified by match to protein family HMM PF04632	gene	gene3755	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3757
AHA_3758	AHA_3758		AHA_3758	4188738	4189604	-	HlyD family secretion protein%2C putative	identified by match to protein family HMM PF00529	gene	gene3756	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3758
AHA_3759	AHA_3759		AHA_3759	4189597	4189866	-	conserved hypothetical protein	identified by match to protein family HMM PF07869	gene	gene3757	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3759
AHA_3760	AHA_3760		AHA_3760	4189933	4190334	-	glutathione-dependent formaldehyde-activating%2C GFA	identified by match to protein family HMM PF04828	gene	gene3758	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3760
AHA_3761	AHA_3761		AHA_3761	4190372	4190995	-	mutator MutT protein	identified by match to protein family HMM PF00293	gene	gene3759	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3761
AHA_3762	AHA_3762		AHA_3762	4190998	4191585	-	esterase YqiA	identified by match to protein family HMM PF05728	gene	gene3760	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3762
AHA_3763	AHA_3763		AHA_3763	4191595	4192413	-	Icc protein	identified by match to protein family HMM PF00149	gene	gene3761	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3763
AHA_3764	AHA_3764		AHA_3764	4192440	4192886	-	phosphohydrolase	identified by match to protein family HMM PF06853	gene	gene3762	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3764
AHA_3765	AHA_3765		AHA_3765	4192888	4193598	-	conserved hypothetical protein	identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00052	gene	gene3763	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3765
AHA_3766	AHA_3766		AHA_3766	4193783	4195159	+	HAS ABC exporter outer membrane component	identified by match to protein family HMM PF02321%3B match to protein family HMM TIGR01844	gene	gene3764	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3766
AHA_3767	AHA_3767	hldE	hldE	4195263	4196690	-	bifunctional protein HldE	identified by similarity to SP:P76658%3B match to protein family HMM PF00294%3B match to protein family HMM PF01467%3B match to protein family HMM TIGR00125%3B match to protein family HMM TIGR02198%3B match to protein family HMM TIGR02199	gene	gene3765	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3767
AHA_3768	AHA_3768	htrB	htrB	4196996	4197919	+	lipid A biosynthesis lauroyl acyltransferase	identified by match to protein family HMM PF03279%3B match to protein family HMM TIGR02207	gene	gene3766	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3768
AHA_3769	AHA_3769		AHA_3769	4198072	4198539	+	TonB domain protein%2C putative	identified by match to protein family HMM TIGR01352	gene	gene3767	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3769
AHA_3770	AHA_3770		AHA_3770	4198649	4199608	-	adenylate cyclase	identified by match to protein family HMM PF01928	gene	gene3768	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3770
AHA_3771	AHA_3771		AHA_3771	4199773	4200459	+	conserved hypothetical protein	identified by match to protein family HMM PF01865%3B match to protein family HMM TIGR00153	gene	gene3769	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3771
AHA_3772	AHA_3772		AHA_3772	4200483	4201748	+	Pho4 family protein	identified by match to protein family HMM PF01384	gene	gene3770	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3772
AHA_3773	AHA_3773		AHA_3773	4201896	4202357	+	ybaK/ebsC protein	identified by match to protein family HMM PF04073%3B match to protein family HMM TIGR00011	gene	gene3771	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3773
AHA_3774	AHA_3774		AHA_3774	4202397	4203659	-	conserved hypothetical protein	identified by match to protein family HMM PF07350	gene	gene3772	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3774
AHA_3775	AHA_3775		AHA_3775	4203884	4204606	-	ribosomal protein serine acetyltransferase	identified by match to protein family HMM PF00583	gene	gene3773	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3775
AHA_3776	AHA_3776		AHA_3776	4204596	4205033	-	conserved hypothetical protein	identified by match to protein family HMM PF00581	gene	gene3774	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3776
AHA_3777	AHA_3777		AHA_3777	4205051	4205518	-	OsmC/Ohr family protein	identified by match to protein family HMM PF02566	gene	gene3775	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3777
AHA_3778	AHA_3778		AHA_3778	4205647	4207083	+	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00392	gene	gene3776	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3778
AHA_3779	AHA_3779		AHA_3779	4207099	4207992	-	transcriptional regulator%2C LysR family	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3777	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3779
AHA_3780	AHA_3780		AHA_3780	4208120	4208521	+	murein hydrolase exporter	identified by match to protein family HMM PF03788	gene	gene3778	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3780
AHA_3781	AHA_3781		AHA_3781	4208514	4209203	+	LrgB family protein	identified by match to protein family HMM PF04172	gene	gene3779	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3781
AHA_3782	AHA_3782		AHA_3782	4209300	4210214	+	conserved hypothetical protein		gene	gene3780	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3782
AHA_3783	AHA_3783		AHA_3783	4210291	4211169	+	conserved hypothetical protein	identified by similarity to GB:AAG04993.1	gene	gene3781	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3783
AHA_3784	AHA_3784		AHA_3784	4211256	4212494	-	multifunctional CCA protein	identified by match to protein family HMM PF01743%3B match to protein family HMM PF01966	gene	gene3782	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3784
AHA_3785	AHA_3785	exeA	exeA	4212835	4214412	+	general secretion pathway protein A	identified by similarity to SP:P45754%3B match to protein family HMM PF01471	gene	gene3783	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3785
AHA_3786	AHA_3786		AHA_3786	4214412	4215095	+	general secretion pathway protein B		gene	gene3784	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3786
AHA_3787	AHA_3787	mutY	mutY	4215293	4216354	+	A/G-specific adenine glycosylase	identified by similarity to SP:P17802%3B match to protein family HMM PF00633%3B match to protein family HMM PF00730%3B match to protein family HMM TIGR01084	gene	gene3785	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3787
AHA_3788	AHA_3788		AHA_3788	4216363	4216635	+	protein YggX	identified by match to protein family HMM PF04362	gene	gene3786	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3788
AHA_3789	AHA_3789		AHA_3789	4216639	4217829	+	membrane-bound lytic murein transglycosylase C	identified by match to protein family HMM PF01464	gene	gene3787	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3789
AHA_3790	AHA_3790		AHA_3790	4217896	4218276	-	OB-fold nucleic acid binding domain protein	identified by match to protein family HMM PF01336%3B match to protein family HMM PF04076	gene	gene3788	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3790
AHA_3791	AHA_3791		AHA_3791	4218430	4219530	+	phosphatidylcholine-sterol acyltransferase	identified by match to protein family HMM PF00657	gene	gene3789	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3791
AHA_3792	AHA_3792		AHA_3792	4219591	4220292	-	conserved hypothetical protein		gene	gene3790	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3792
AHA_3793	AHA_3793		AHA_3793	4220559	4221617	+	outer membrane protein P5	identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389	gene	gene3791	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3793
AHA_3794	AHA_3794		AHA_3794	4221703	4222272	-	conserved hypothetical protein	identified by match to protein family HMM PF03886	gene	gene3792	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3794
AHA_3795	AHA_3795		AHA_3795	4222272	4223918	-	paraquat-inducible protein B	identified by match to protein family HMM PF02470	gene	gene3793	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3795
AHA_3796	AHA_3796		AHA_3796	4223911	4225191	-	paraquat-inducible protein A	identified by match to protein family HMM PF04403%3B match to protein family HMM TIGR00155	gene	gene3794	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3796
AHA_3797	AHA_3797		AHA_3797	4225369	4225731	+	Hfq protein	identified by match to protein family HMM PF01423%3B match to protein family HMM TIGR02383	gene	gene3795	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3797
AHA_3798	AHA_3798		AHA_3798	4225871	4226554	-	CbbY family protein	identified by match to protein family HMM PF00702%3B match to protein family HMM TIGR01509%3B match to protein family HMM TIGR02009	gene	gene3796	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3798
AHA_3799	AHA_3799		AHA_3799	4226527	4227630	-	sensory box/GGDEF family protein%2C putative		gene	gene3797	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3799
AHA_3800	AHA_3800		AHA_3800	4227635	4229275	-	GGDEF family protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3798	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3800
AHA_3801	AHA_3801	dapA-2	dapA-2	4229370	4230242	-	dihydrodipicolinate synthase	identified by match to protein family HMM PF00701%3B match to protein family HMM TIGR00674	gene	gene3799	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3801
AHA_3802	AHA_3802		AHA_3802	4230523	4231551	+	ribosomal RNA small subunit methyltransferase C (rRNA(guanine-N(2)-)-methyltransferase)	identified by match to protein family HMM PF05175	gene	gene3800	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3802
AHA_3803	AHA_3803	glgC-3	glgC-3	4231701	4232918	+	glucose-1-phosphate adenylyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR02091	gene	gene3801	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3803
AHA_3804	AHA_3804		AHA_3804	4232908	4234368	+	glycogen synthase	identified by match to protein family HMM PF00534%3B match to protein family HMM TIGR02095	gene	gene3802	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3804
AHA_3805	AHA_3805		AHA_3805	4234485	4234570	+	tRNA-Leu		tRNA	gene3803	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3805
AHA_3806	AHA_3806		AHA_3806	4234626	4234711	+	tRNA-Leu		tRNA	gene3804	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3806
AHA_3807	AHA_3807		AHA_3807	4234756	4234841	+	tRNA-Leu		tRNA	gene3805	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3807
AHA_3808	AHA_3808		AHA_3808	4234887	4234972	+	tRNA-Leu		tRNA	gene3806	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3808
AHA_3809	AHA_3809		AHA_3809	4235044	4235129	+	tRNA-Leu		tRNA	gene3807	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3809
AHA_3810	AHA_3810		AHA_3810	4235506	4235715	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3809	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3810
AHA_3811	AHA_3811		AHA_3811	4235158	4235511	+	conserved hypothetical protein		gene	gene3808	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3811
AHA_3812	AHA_3812	nhaC	nhaC	4236015	4237424	+	Na+/H+ antiporter NhaC	identified by match to protein family HMM PF03553%3B match to protein family HMM TIGR00931	gene	gene3810	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3812
AHA_3813	AHA_3813		AHA_3813	4237530	4238453	+	transcriptional regulator	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3811	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3813
AHA_3814	AHA_3814		AHA_3814	4238653	4239798	+	ABC transporter%2C periplasmic substrate-binding protein	identified by match to protein family HMM PF01547	gene	gene3812	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3814
AHA_3815	AHA_3815		AHA_3815	4239871	4240884	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3813	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3815
AHA_3816	AHA_3816		AHA_3816	4240881	4241849	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3814	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3816
AHA_3817	AHA_3817		AHA_3817	4241948	4242763	+	ABC transporter%2C permease protein	identified by match to protein family HMM PF00528	gene	gene3815	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3817
AHA_3818	AHA_3818		AHA_3818	4242793	4244223	+	aldehyde dehydrogenase	identified by match to protein family HMM PF00171	gene	gene3816	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3818
AHA_3819	AHA_3819		AHA_3819	4244380	4244712	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3817	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3819
AHA_3820	AHA_3820		AHA_3820	4245048	4245923	-	transporter%2C 10 TMS drug/metabolite exporter (DME) family	identified by match to protein family HMM PF00892	gene	gene3818	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3820
AHA_3821	AHA_3821		AHA_3821	4246018	4246476	+	transcriptional regulator%2C AsnC family	identified by match to protein family HMM PF01037	gene	gene3819	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3821
AHA_3822	AHA_3822		AHA_3822	4246595	4247200	-	maltose O-acetyltransferase	identified by match to protein family HMM PF00132	gene	gene3820	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3822
AHA_3823	AHA_3823	treC	treC	4247204	4248865	-	alpha%2Calpha-phosphotrehalase	identified by match to protein family HMM PF00128%3B match to protein family HMM TIGR02403	gene	gene3821	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3823
AHA_3824	AHA_3824	treP	treP	4248934	4250454	-	pts system%2C trehalose-specific iibc component	identified by match to protein family HMM PF00367%3B match to protein family HMM PF02378%3B match to protein family HMM TIGR00826%3B match to protein family HMM TIGR01992	gene	gene3822	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3824
AHA_3825	AHA_3825	treR	treR	4250556	4251503	-	trehalose operon repressor	identified by match to protein family HMM PF00356%3B match to protein family HMM PF00532%3B match to protein family HMM TIGR02405	gene	gene3823	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3825
AHA_3826	AHA_3826		AHA_3826	4251714	4252664	+	transporter	identified by match to protein family HMM PF03547	gene	gene3824	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3826
AHA_3827	AHA_3827		AHA_3827	4252732	4252926	+	mercuric reductase (Hg(II) reductase)	identified by match to protein family HMM PF00403	gene	gene3825	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3827
AHA_3828	AHA_3828		AHA_3828	4253059	4254117	+	L-asparaginase%2C type II	identified by match to protein family HMM PF00710%3B match to protein family HMM TIGR00520	gene	gene3826	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3828
AHA_3829	AHA_3829		AHA_3829	4254208	4255341	-	putative Ca2+/Na+ antiporter	identified by match to protein family HMM PF01699	gene	gene3827	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3829
AHA_3830	AHA_3830		AHA_3830	4255585	4256172	+	conserved hypothetical protein		gene	gene3828	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3830
AHA_3831	AHA_3831	mgsA	mgsA	4256233	4256796	-	methylglyoxal synthase	identified by match to protein family HMM PF02142%3B match to protein family HMM TIGR00160	gene	gene3829	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3831
AHA_3832	AHA_3832		AHA_3832	4256780	4258885	-	conserved hypothetical protein	identified by match to protein family HMM PF05960	gene	gene3830	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3832
AHA_3833	AHA_3833	bfr	bfr	4259088	4259567	-	bacterioferritin	identified by match to protein family HMM PF00210%3B match to protein family HMM TIGR00754	gene	gene3831	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3833
AHA_3834	AHA_3834		AHA_3834	4259710	4260012	-	conserved domain protein	identified by match to protein family HMM PF04324	gene	gene3832	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3834
AHA_3835	AHA_3835		AHA_3835	4260054	4260365	+	transcriptional activator HlyU		gene	gene3833	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3835
AHA_3836	AHA_3836		AHA_3836	4262415	4263134	-	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene3835	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3836
AHA_3837	AHA_3837		AHA_3837	4260362	4262428	+	conserved hypothetical protein	identified by match to protein family HMM PF00583%3B match to protein family HMM PF05127	gene	gene3834	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3837
AHA_3838	AHA_3838		AHA_3838	4263341	4264354	+	chemotaxis protein CheV	identified by match to protein family HMM PF00072%3B match to protein family HMM PF01584	gene	gene3836	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3838
AHA_3839	AHA_3839		AHA_3839	4264415	4265854	-	transporter gate domain protein	identified by match to protein family HMM PF07670	gene	gene3837	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3839
AHA_3840	AHA_3840		AHA_3840	4265931	4266446	-	conserved hypothetical protein	identified by match to protein family HMM PF08020	gene	gene3838	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3840
AHA_3841	AHA_3841		AHA_3841	4266919	4268262	-	Ion channel family	identified by match to protein family HMM PF07885	gene	gene3839	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3841
AHA_3842	AHA_3842		AHA_3842	4268521	4268596	-	tRNA-Asn		tRNA	gene3840	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3842
AHA_3843	AHA_3843		AHA_3843	4268642	4268717	-	tRNA-Phe		tRNA	gene3841	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3843
AHA_3844	AHA_3844		AHA_3844	4268721	4268796	-	tRNA-Thr		tRNA	gene3842	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3844
AHA_3845	AHA_3845		AHA_3845	4268849	4268924	-	tRNA-Phe		tRNA	gene3843	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3845
AHA_3846	AHA_3846		AHA_3846	4268972	4269739	-	conserved hypothetical protein	identified by match to protein family HMM PF02660%3B match to protein family HMM TIGR00023	gene	gene3844	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3846
AHA_3847	AHA_3847	folB	folB	4269811	4270182	+	dihydroneopterin aldolase	identified by similarity to SP:P31055%3B match to protein family HMM PF02152%3B match to protein family HMM TIGR00525%3B match to protein family HMM TIGR00526	gene	gene3845	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3847
AHA_3848	AHA_3848	folK-2	folK-2	4270182	4270691	+	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase	identified by match to protein family HMM PF01288%3B match to protein family HMM TIGR01498	gene	gene3846	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3848
AHA_3849	AHA_3849		AHA_3849	4270813	4271295	+	DNA-binding protein	identified by match to protein family HMM PF04073	gene	gene3847	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3849
AHA_3850	AHA_3850		AHA_3850	4271305	4272693	-	transporter%2C major facilitator family	identified by match to protein family HMM PF07690	gene	gene3848	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3850
AHA_3851	AHA_3851		AHA_3851	4272755	4273873	-	cobalamin synthesis protein/P47K family protein	identified by match to protein family HMM PF02492%3B match to protein family HMM PF07683	gene	gene3849	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3851
AHA_3852	AHA_3852		AHA_3852	4273892	4275286	-	FAD binding domain protein	identified by match to protein family HMM PF01565	gene	gene3850	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3852
AHA_3853	AHA_3853		AHA_3853	4275410	4276027	-	transporter%2C LysE family	identified by match to protein family HMM PF01810	gene	gene3851	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3853
AHA_3854	AHA_3854		AHA_3854	4276104	4277012	+	HTH-type transcriptional regulator TrpI	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3852	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3854
AHA_3855	AHA_3855		AHA_3855	4277017	4278591	-	Rtn protein	identified by match to protein family HMM PF00563	gene	gene3853	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3855
AHA_3856	AHA_3856	acnB	acnB	4278756	4281392	-	aconitate hydratase 2	identified by match to protein family HMM PF00330%3B match to protein family HMM PF06434%3B match to protein family HMM TIGR00117	gene	gene3854	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3856
AHA_3857	AHA_3857		AHA_3857	4281582	4283840	-	serine protease	identified by match to protein family HMM PF01734%3B match to protein family HMM PF07244	gene	gene3855	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3857
AHA_3858	AHA_3858		AHA_3858	4284039	4285985	+	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3856	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3858
AHA_3859	AHA_3859		AHA_3859	4286011	4287765	+	hemolysin secretion protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3857	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3859
AHA_3860	AHA_3860		AHA_3860	4287909	4288091	+	conserved hypothetical protein		gene	gene3858	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3860
AHA_3861	AHA_3861	lpdA	lpdA	4288159	4289586	-	dihydrolipoamide dehydrogenase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01134%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR01350	gene	gene3859	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3861
AHA_3862	AHA_3862	aceF	aceF	4289736	4291631	-	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	identified by match to protein family HMM PF00198%3B match to protein family HMM PF00364%3B match to protein family HMM PF02817%3B match to protein family HMM TIGR01348	gene	gene3860	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3862
AHA_3863	AHA_3863		AHA_3863	4291745	4294405	-	pyruvate dehydrogenase E1 component	identified by match to protein family HMM TIGR00759	gene	gene3861	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3863
AHA_3864	AHA_3864		AHA_3864	4294485	4295249	-	pyruvate dehydrogenase complex repressor	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07729	gene	gene3862	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3864
AHA_3865	AHA_3865		AHA_3865	4295525	4296097	-	N-acetyl-anhydromuramyl-L-alanine amidase	identified by match to protein family HMM PF01510	gene	gene3863	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3865
AHA_3866	AHA_3866		AHA_3866	4296188	4296715	+	conserved hypothetical protein	identified by similarity to GB:AAZ24736.1	gene	gene3864	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3866
AHA_3867	AHA_3867	nadC	nadC	4296721	4297578	+	nicotinate-nucleotide pyrophosphorylase	identified by match to protein family HMM PF01729%3B match to protein family HMM PF02749%3B match to protein family HMM TIGR00078	gene	gene3865	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3867
AHA_3868	AHA_3868		AHA_3868	4297901	4298383	+	pilin family protein	identified by similarity to GB:AAX12396.1%3B match to protein family HMM PF07963%3B match to protein family HMM TIGR02532	gene	gene3866	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3868
AHA_3869	AHA_3869	pilB	pilB	4298377	4300092	+	type IV-A pilus assembly ATPase PilB	identified by match to protein family HMM PF00437%3B match to protein family HMM PF05157%3B match to protein family HMM TIGR02538	gene	gene3867	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3869
AHA_3870	AHA_3870	pilC	pilC	4300208	4301449	+	type 4 fimbrial assembly protein PilC	identified by match to protein family HMM PF00482	gene	gene3868	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3870
AHA_3871	AHA_3871	gspO	gspO	4301472	4302344	+	prepilin peptidase	identified by similarity to SP:P45794%3B match to protein family HMM PF01478%3B match to protein family HMM PF06750	gene	gene3869	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3871
AHA_3872	AHA_3872	coaE	coaE	4302364	4302978	+	dephospho-CoA kinase	identified by similarity to SP:P0A6I9%3B match to protein family HMM PF01121%3B match to protein family HMM TIGR00152	gene	gene3870	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3872
AHA_3873	AHA_3873		AHA_3873	4302950	4303738	+	conserved hypothetical protein	identified by match to protein family HMM PF07072	gene	gene3871	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3873
AHA_3874	AHA_3874		AHA_3874	4303748	4303942	+	conserved domain protein	identified by match to protein family HMM PF03884	gene	gene3872	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3874
AHA_3875	AHA_3875		AHA_3875	4304003	4304419	-	mutator MutT protein	identified by match to protein family HMM PF00293%3B match to protein family HMM TIGR00586	gene	gene3873	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3875
AHA_3876	AHA_3876		AHA_3876	4304425	4305609	-	tetratricopeptide repeat domain protein		gene	gene3874	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3876
AHA_3877	AHA_3877	secA	secA	4305684	4308404	-	preprotein translocase%2C SecA subunit	identified by similarity to SP:P10408%3B match to protein family HMM PF01043%3B match to protein family HMM PF02810%3B match to protein family HMM PF07516%3B match to protein family HMM PF07517%3B match to protein family HMM TIGR00963	gene	gene3875	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3877
AHA_3878	AHA_3878		AHA_3878	4308464	4309369	-	M23/M37 peptidase domain protein	identified by match to protein family HMM PF01551	gene	gene3876	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3878
AHA_3879	AHA_3879	lpxC	lpxC	4309510	4310433	-	UDP-3-0-acyl N-acetylglucosamine deacetylase	identified by match to protein family HMM PF03331%3B match to protein family HMM TIGR00325	gene	gene3877	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3879
AHA_3880	AHA_3880	ftsZ	ftsZ	4310535	4311686	-	cell division protein FtsZ	identified by match to protein family HMM PF00091%3B match to protein family HMM PF03953%3B match to protein family HMM TIGR00065	gene	gene3878	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3880
AHA_3881	AHA_3881	ftsA	ftsA	4311727	4312986	-	cell division protein FtsA	identified by match to protein family HMM PF02491%3B match to protein family HMM TIGR01174	gene	gene3879	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3881
AHA_3882	AHA_3882	ftsQ	ftsQ	4312967	4313650	-	cell division protein FtsQ	identified by similarity to SP:P06136%3B match to protein family HMM PF03799	gene	gene3880	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3882
AHA_3883	AHA_3883	murC	murC	4313817	4315271	-	UDP-N-acetylmuramate--alanine ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01082	gene	gene3881	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3883
AHA_3884	AHA_3884	murG	murG	4315268	4316353	-	undecaprenyldiphospho-muramoylpentapeptide beta-N-acetylglucosaminyltransferase	identified by match to protein family HMM PF03033%3B match to protein family HMM PF04101%3B match to protein family HMM TIGR01133	gene	gene3882	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3884
AHA_3885	AHA_3885	ftsW	ftsW	4316353	4317489	-	cell division protein FtsW	identified by match to protein family HMM PF01098%3B match to protein family HMM TIGR02614	gene	gene3883	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3885
AHA_3886	AHA_3886	murD	murD	4317531	4318814	-	UDP-N-acetylmuramoylalanine--D-glutamate ligase	identified by match to protein family HMM PF02875%3B match to protein family HMM TIGR01087	gene	gene3884	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3886
AHA_3887	AHA_3887	mraY	mraY	4318818	4319900	-	phospho-N-acetylmuramoyl-pentapeptide-transferase	identified by match to protein family HMM PF00953%3B match to protein family HMM TIGR00445	gene	gene3885	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3887
AHA_3888	AHA_3888	murF	murF	4319894	4321249	-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01143	gene	gene3886	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3888
AHA_3889	AHA_3889	murE	murE	4321246	4322730	-	UDP-N-acetylmuramoylalanyl-D-glutamate--2%2C6-diaminopimelate ligase	identified by match to protein family HMM PF01225%3B match to protein family HMM PF02875%3B match to protein family HMM TIGR01085	gene	gene3887	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3889
AHA_3890	AHA_3890	ftsI	ftsI	4322711	4324465	-	peptidoglycan synthetase FtsI	identified by match to protein family HMM PF00905%3B match to protein family HMM PF03717	gene	gene3888	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3890
AHA_3891	AHA_3891	ftsL	ftsL	4324462	4324776	-	cell division protein FtsL	identified by match to protein family HMM PF04999%3B match to protein family HMM TIGR02209	gene	gene3889	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3891
AHA_3892	AHA_3892	mraW	mraW	4324780	4325718	-	S-adenosyl-methyltransferase MraW	identified by match to protein family HMM PF01795%3B match to protein family HMM TIGR00006	gene	gene3890	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3892
AHA_3893	AHA_3893	mraZ	mraZ	4325719	4326177	-	MraZ protein	identified by match to protein family HMM PF02381%3B match to protein family HMM TIGR00242	gene	gene3891	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3893
AHA_3894	AHA_3894		AHA_3894	4327140	4327973	-	tetrapyrrole methylase family protein	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR00096	gene	gene3892	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3894
AHA_3895	AHA_3895		AHA_3895	4327948	4329960	+	LppC superfamily	identified by match to protein family HMM PF04348	gene	gene3893	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3895
AHA_3896	AHA_3896		AHA_3896	4329881	4330273	+	conserved hypothetical protein	identified by match to protein family HMM PF02021%3B match to protein family HMM TIGR00252	gene	gene3894	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3896
AHA_3897	AHA_3897	gmhA-2	gmhA-2	4330283	4330873	+	phosphoheptose isomerase	identified by match to protein family HMM TIGR00441	gene	gene3895	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3897
AHA_3898	AHA_3898		AHA_3898	4330830	4331456	+	secreted protein	identified by match to protein family HMM PF04972	gene	gene3896	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3898
AHA_3899	AHA_3899	sspB	sspB	4331509	4331928	-	stringent starvation protein B	identified by similarity to SP:P25663%3B match to protein family HMM PF04386	gene	gene3897	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3899
AHA_3900	AHA_3900		AHA_3900	4331931	4332560	-	stringent starvation protein A	identified by match to protein family HMM PF00043%3B match to protein family HMM PF00462%3B match to protein family HMM PF02798	gene	gene3898	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3900
AHA_3901	AHA_3901		AHA_3901	4332648	4333382	-	ubiquinol--cytochrome c reductase%2C cytochrome c1	identified by match to protein family HMM PF02167	gene	gene3899	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3901
AHA_3902	AHA_3902	petB	petB	4333379	4334596	-	ubiquinol-cytochrome c reductase%2C cytochrome b subunit	identified by match to protein family HMM PF00032%3B match to protein family HMM PF00033	gene	gene3900	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3902
AHA_3903	AHA_3903	petA	petA	4334599	4335189	-	ubiquinol-cytochrome c reductase%2C iron-sulfur subunit	identified by match to protein family HMM PF00355%3B match to protein family HMM TIGR01416	gene	gene3901	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3903
AHA_3904	AHA_3904	rpsI	rpsI	4335485	4335877	-	ribosomal protein S9	identified by match to protein family HMM PF00380	gene	gene3902	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3904
AHA_3905	AHA_3905	rplM	rplM	4335893	4336321	-	ribosomal protein L13	identified by match to protein family HMM PF00572%3B match to protein family HMM TIGR01066	gene	gene3903	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3905
AHA_3906	AHA_3906		AHA_3906	4336588	4337682	-	ATPase%2C AFG1 family	identified by match to protein family HMM PF03969	gene	gene3904	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3906
AHA_3907	AHA_3907		AHA_3907	4337823	4338203	+	conserved hypothetical protein	identified by match to protein family HMM PF06295	gene	gene3905	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3907
AHA_3908	AHA_3908	degQ	degQ	4338285	4339646	+	serine peptidase DegQ	identified by similarity to SP:P39099%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02037	gene	gene3906	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3908
AHA_3909	AHA_3909	degS	degS	4339736	4340857	+	periplasmic serine peptidase DegS	identified by similarity to SP:P31137%3B match to protein family HMM PF00089%3B match to protein family HMM PF00595%3B match to protein family HMM TIGR02038	gene	gene3907	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3909
AHA_3910	AHA_3910		AHA_3910	4341166	4341528	+	transcriptional regulator	identified by match to protein family HMM PF00874	gene	gene3908	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3910
AHA_3911	AHA_3911		AHA_3911	4341529	4341894	+	transcriptional regulator		gene	gene3909	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3911
AHA_3912	AHA_3912		AHA_3912	4341894	4342190	+	hypothetical cytosolic protein		gene	gene3910	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3912
AHA_3913	AHA_3913		AHA_3913	4342336	4343007	+	permease		gene	gene3911	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3913
AHA_3914	AHA_3914		AHA_3914	4343019	4343669	+	conserved hypothetical protein		gene	gene3912	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3914
AHA_3915	AHA_3915		AHA_3915	4343713	4344852	+	dihydroorotase	identified by match to protein family HMM PF01979	gene	gene3913	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3915
AHA_3916	AHA_3916		AHA_3916	4344836	4345951	+	pyridoxal phosphate-dependent enzyme%2C putative	identified by match to protein family HMM PF01212%3B match to protein family HMM PF03841%3B match to protein family HMM TIGR01437	gene	gene3914	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3916
AHA_3917	AHA_3917		AHA_3917	4345951	4346691	+	4-hydroxy-2-oxoglutarate aldolase	identified by match to protein family HMM PF07071	gene	gene3915	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3917
AHA_3918	AHA_3918		AHA_3918	4346796	4348700	+	transcription antiterminator%2C BglG family	identified by match to protein family HMM PF00359%3B match to protein family HMM PF00874%3B match to protein family HMM PF05043	gene	gene3916	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3918
AHA_3919	AHA_3919		AHA_3919	4348716	4348988	-	multiphosphoryl transfer protein (MTP)	identified by match to protein family HMM PF00381%3B match to protein family HMM TIGR01003	gene	gene3917	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3919
AHA_3920	AHA_3920		AHA_3920	4349009	4349875	-	conserved hypothetical protein	identified by match to protein family HMM PF03668	gene	gene3918	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3920
AHA_3921	AHA_3921		AHA_3921	4349918	4350364	-	conserved hypothetical protein	identified by match to protein family HMM PF00359%3B match to protein family HMM TIGR01419	gene	gene3919	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3921
AHA_3922	AHA_3922	yfiA-2	yfiA-2	4350367	4350654	-	ribosomal subunit interface protein	identified by match to protein family HMM PF02482%3B match to protein family HMM TIGR00741	gene	gene3920	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3922
AHA_3923	AHA_3923	rpoN	rpoN	4350676	4352115	-	RNA polymerase sigma-54 factor	identified by match to protein family HMM PF00309%3B match to protein family HMM PF04552%3B match to protein family HMM PF04963%3B match to protein family HMM TIGR02395	gene	gene3921	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3923
AHA_3924	AHA_3924		AHA_3924	4352181	4352906	-	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3922	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3924
AHA_3925	AHA_3925		AHA_3925	4352910	4353473	-	protein YhbN	identified by match to protein family HMM PF03968%3B match to protein family HMM TIGR03002	gene	gene3923	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3925
AHA_3926	AHA_3926		AHA_3926	4353424	4353984	-	conserved hypothetical protein	identified by match to protein family HMM PF06835	gene	gene3924	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3926
AHA_3927	AHA_3927		AHA_3927	4353981	4354535	-	3-deoxy-D-manno-octulosonate 8-phosphate phosphatase	identified by match to protein family HMM TIGR01662%3B match to protein family HMM TIGR01670	gene	gene3925	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3927
AHA_3928	AHA_3928	kdsD	kdsD	4354535	4355530	-	arabinose 5-phosphate isomerase	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR00393	gene	gene3926	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3928
AHA_3929	AHA_3929		AHA_3929	4355738	4356538	+	ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene3927	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3929
AHA_3930	AHA_3930		AHA_3930	4356538	4357317	+	putative ABC transporter%2C permease protein	identified by match to protein family HMM PF02405%3B match to protein family HMM TIGR00056	gene	gene3928	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3930
AHA_3931	AHA_3931		AHA_3931	4357325	4357816	+	Mce family protein	identified by match to protein family HMM PF02470	gene	gene3929	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3931
AHA_3932	AHA_3932	ttg2D	ttg2D	4357826	4358458	+	toluene tolerance protein Ttg2D	identified by match to protein family HMM PF05494	gene	gene3930	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3932
AHA_3933	AHA_3933		AHA_3933	4358308	4358727	+	anti-anti-sigma factor family protein	identified by match to protein family HMM PF01740	gene	gene3931	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3933
AHA_3934	AHA_3934		AHA_3934	4358727	4358984	+	BolA/YrbA family protein	identified by match to protein family HMM PF01722	gene	gene3932	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3934
AHA_3935	AHA_3935	murA	murA	4359002	4360258	+	UDP-N-acetylglucosamine 1-carboxyvinyltransferase	identified by match to protein family HMM PF00275%3B match to protein family HMM TIGR01072	gene	gene3933	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3935
AHA_3936	AHA_3936		AHA_3936	4360344	4361687	-	protein PmbA	identified by match to protein family HMM PF01523	gene	gene3934	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3936
AHA_3937	AHA_3937		AHA_3937	4361780	4362325	+	conserved hypothetical protein	identified by match to protein family HMM PF04751	gene	gene3935	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3937
AHA_3938	AHA_3938		AHA_3938	4362411	4365494	-	conserved hypothetical protein		gene	gene3936	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3938
AHA_3939	AHA_3939		AHA_3939	4365711	4366067	-	conserved hypothetical protein	identified by match to protein family HMM PF04363	gene	gene3937	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3939
AHA_3940	AHA_3940	rrfH	rrfH	4366322	4366439	-	5S ribosomal RNA		rRNA	gene3938	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3940
AHA_3941	AHA_3941	rrlH	rrlH	4366516	4369411	-	23S ribosomal RNA		rRNA	gene3939	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3941
AHA_3942	AHA_3942		AHA_3942	4369644	4369719	-	tRNA-Ala		tRNA	gene3940	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3942
AHA_3943	AHA_3943		AHA_3943	4369730	4369806	-	tRNA-Ile		tRNA	gene3941	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3943
AHA_3944	AHA_3944	rrsH	rrsH	4369880	4371416	-	16S ribosomal RNA		rRNA	gene3942	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3944
AHA_3945	AHA_3945		AHA_3945	4371918	4373114	+	heme/copper membrane protein	identified by match to protein family HMM PF05940	gene	gene3943	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3945
AHA_3946	AHA_3946		AHA_3946	4373123	4373815	-	DNA-binding protein	identified by match to protein family HMM PF01381%3B match to protein family HMM PF07883	gene	gene3944	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3946
AHA_3947	AHA_3947		AHA_3947	4373814	4374965	+	benzoate transporter	identified by match to protein family HMM PF00860%3B match to protein family HMM PF03594%3B match to protein family HMM TIGR00843	gene	gene3945	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3947
AHA_3948	AHA_3948		AHA_3948	4375116	4376180	+	conserved hypothetical protein		gene	gene3946	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3948
AHA_3949	AHA_3949	metF	metF	4376243	4377139	-	5%2C10-methylenetetrahydrofolate reductase	identified by match to protein family HMM PF02219%3B match to protein family HMM TIGR00676	gene	gene3947	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3949
AHA_3950	AHA_3950		AHA_3950	4377468	4378259	+	putative acetyltransferase	identified by match to protein family HMM PF00583	gene	gene3948	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3950
AHA_3951	AHA_3951		AHA_3951	4378323	4379807	-	ABC-type sugar transport system%2C periplasmic component	identified by match to protein family HMM PF01547	gene	gene3949	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3951
AHA_3952	AHA_3952		AHA_3952	4379816	4381795	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene3950	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3952
AHA_3953	AHA_3953		AHA_3953	4382015	4382626	-	outer membrane protein W	identified by match to protein family HMM PF03922	gene	gene3951	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3953
AHA_3954	AHA_3954		AHA_3954	4383073	4384620	-	PAS:GGDEF domain protein	identified by match to protein family HMM PF00672%3B match to protein family HMM PF00990%3B match to protein family HMM PF05228%3B match to protein family HMM TIGR00254	gene	gene3952	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3954
AHA_3955	AHA_3955	uvrA	uvrA	4384899	4387727	-	excinuclease ABC%2C A subunit	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR00630	gene	gene3953	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3955
AHA_3956	AHA_3956		AHA_3956	4387822	4388481	-	probable csgAB operon transcriptional regulatory protein	identified by match to protein family HMM PF00196	gene	gene3954	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3956
AHA_3957	AHA_3957	ssb	ssb	4389006	4389584	+	single-strand binding protein	identified by match to protein family HMM PF00436%3B match to protein family HMM TIGR00621	gene	gene3955	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3957
AHA_3958	AHA_3958		AHA_3958	4389752	4390510	+	ABC polar amino acid transport system%2C putative		gene	gene3956	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3958
AHA_3959	AHA_3959		AHA_3959	4390591	4390713	-	conserved hypothetical protein		gene	gene3957	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3959
AHA_3960	AHA_3960		AHA_3960	4391167	4392045	+	cation efflux family protein	identified by match to protein family HMM PF01545%3B match to protein family HMM TIGR01297	gene	gene3958	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3960
AHA_3961	AHA_3961		AHA_3961	4392210	4392479	+	conserved hypothetical protein		gene	gene3959	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3961
AHA_3962	AHA_3962		AHA_3962	4392879	4393091	+	conserved domain protein	identified by match to protein family HMM PF00313	gene	gene3960	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3962
AHA_3963	AHA_3963		AHA_3963	4393500	4395446	+	colicin I receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715	gene	gene3961	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3963
AHA_3964	AHA_3964		AHA_3964	4395481	4396968	-	fog: GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene3962	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3964
AHA_3965	AHA_3965		AHA_3965	4397072	4398463	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene3963	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3965
AHA_3966	AHA_3966		AHA_3966	4398468	4399190	-	DNA-binding response regulator	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene3964	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3966
AHA_3967	AHA_3967		AHA_3967	4399633	4399959	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3965	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3967
AHA_3968	AHA_3968		AHA_3968	4400179	4400529	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3966	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3968
AHA_3969	AHA_3969		AHA_3969	4400588	4401007	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3967	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3969
AHA_3970	AHA_3970		AHA_3970	4401167	4402168	-	sensory box protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00229%3B match to protein family HMM TIGR00254	gene	gene3968	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3970
AHA_3971	AHA_3971		AHA_3971	4402357	4403262	-	putative AraC-family transcriptional regulatory protein	identified by match to protein family HMM PF00165	gene	gene3969	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3971
AHA_3972	AHA_3972		AHA_3972	4403341	4403739	+	lactoylglutathione lyase	identified by match to protein family HMM PF00903	gene	gene3970	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3972
AHA_3973	AHA_3973		AHA_3973	4403945	4404991	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3971	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3973
AHA_3974	AHA_3974	recD	recD	4405048	4407102	-	exodeoxyribonuclease V%2C alpha subunit	identified by match to protein family HMM TIGR01447	gene	gene3972	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3974
AHA_3975	AHA_3975	recB	recB	4407099	4410716	-	exodeoxyribonuclease V%2C beta subunit	identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR00609	gene	gene3973	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3975
AHA_3976	AHA_3976	recC	recC	4410716	4414066	-	exodeoxyribonuclease V%2C gamma subunit	identified by match to protein family HMM PF04257%3B match to protein family HMM TIGR01450	gene	gene3974	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3976
AHA_3977	AHA_3977		AHA_3977	4414295	4414762	-	inner membrane protein YqjF	identified by match to protein family HMM PF07681	gene	gene3975	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3977
AHA_3978	AHA_3978		AHA_3978	4414728	4415414	-	cupin domain protein	identified by match to protein family HMM PF02678%3B match to protein family HMM PF07883	gene	gene3976	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3978
AHA_3979	AHA_3979		AHA_3979	4415445	4415777	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3977	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3979
AHA_3980	AHA_3980		AHA_3980	4416035	4416949	+	putative HTH-type transcriptional regulator YeeY	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene3978	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3980
AHA_3981	AHA_3981		AHA_3981	4417401	4418165	+	conserved hypothetical protein		gene	gene3979	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3981
AHA_3982	AHA_3982		AHA_3982	4418232	4419038	-	transcriptional regulator%2C GntR family	identified by match to protein family HMM PF00392%3B match to protein family HMM PF07702	gene	gene3980	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3982
AHA_3983	AHA_3983		AHA_3983	4419389	4420312	+	ABC transporter substrate-binding protein		gene	gene3981	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3983
AHA_3984	AHA_3984		AHA_3984	4420383	4421156	+	conserved hypothetical protein		gene	gene3982	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3984
AHA_3985	AHA_3985		AHA_3985	4421156	4422055	+	ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene3983	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3985
AHA_3986	AHA_3986		AHA_3986	4422048	4422824	+	ABC transporter permease protein	identified by match to protein family HMM PF00528	gene	gene3984	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3986
AHA_3987	AHA_3987		AHA_3987	4422831	4423838	+	sulfate/thiosulfate import ATP-binding protein CysA	identified by match to protein family HMM PF00005	gene	gene3985	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3987
AHA_3988	AHA_3988		AHA_3988	4423878	4424537	+	HAD-superfamily subfamily IB hydrolase	identified by match to protein family HMM TIGR01488%3B match to protein family HMM TIGR01490	gene	gene3986	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3988
AHA_3989	AHA_3989		AHA_3989	4424553	4426163	-	pas:GGDEF%2C putative	identified by match to protein family HMM PF00990%3B match to protein family HMM PF02743%3B match to protein family HMM TIGR00254	gene	gene3987	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3989
AHA_3990	AHA_3990		AHA_3990	4426273	4426713	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3988	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3990
AHA_3991	AHA_3991		AHA_3991	4426861	4427760	+	transporter	identified by match to protein family HMM PF00892	gene	gene3989	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3991
AHA_3992	AHA_3992		AHA_3992	4427953	4428810	-	DNA gyrase inhibitor	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06445	gene	gene3990	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3992
AHA_3993	AHA_3993		AHA_3993	4428807	4429292	-	acetyltransferase%2C GNAT family	identified by match to protein family HMM PF00583	gene	gene3991	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3993
AHA_3994	AHA_3994		AHA_3994	4429456	4430904	+	catalase	identified by match to protein family HMM PF00199	gene	gene3992	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3994
AHA_3995	AHA_3995		AHA_3995	4431375	4431701	-	conserved hypothetical protein		gene	gene3993	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3995
AHA_3996	AHA_3996		AHA_3996	4431917	4433155	+	conserved hypothetical protein	identified by similarity to GB:AAN54257.1	gene	gene3994	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3996
AHA_3997	AHA_3997		AHA_3997	4433315	4434088	+	ABC-type amino acid transport%2C signal transduction systems%2C periplasmic component/domain%2C putative		gene	gene3995	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3997
AHA_3998	AHA_3998		AHA_3998	4434143	4434595	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3996	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3998
AHA_3999	AHA_3999		AHA_3999	4434721	4436100	+	PAP2 superfamily protein	identified by match to protein family HMM PF00293%3B match to protein family HMM PF01569	gene	gene3997	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_3999
AHA_4000	AHA_4000		AHA_4000	4436103	4437182	+	putative membrane protein	identified by match to protein family HMM PF01594	gene	gene3998	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4000
AHA_4001	AHA_4001		AHA_4001	4437421	4438632	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene3999	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4001
AHA_4002	AHA_4002		AHA_4002	4439021	4440139	-	agmatine deiminase	identified by match to protein family HMM PF04371%3B match to protein family HMM TIGR01409	gene	gene4000	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4002
AHA_4003	AHA_4003		AHA_4003	4440307	4441200	+	regulatory protein%2C LysR:LysR%2C substrate-binding	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene4001	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4003
AHA_4004	AHA_4004		AHA_4004	4441289	4443178	+	PTS-dependent dihydroxyacetone kinase operon regulatory protein	identified by match to protein family HMM PF00158%3B match to protein family HMM PF00989%3B match to protein family HMM PF01590%3B match to protein family HMM PF02954	gene	gene4002	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4004
AHA_4005	AHA_4005	gldA	gldA	4443274	4444356	-	glycerol dehydrogenase	identified by match to protein family HMM PF00465	gene	gene4003	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4005
AHA_4006	AHA_4006		AHA_4006	4444495	4445211	-	PTS-dependent dihydroxyacetone kinase%2C phosphotransferase subunit DhaM	identified by match to protein family HMM PF00381%3B match to protein family HMM PF03610%3B match to protein family HMM TIGR01003%3B match to protein family HMM TIGR02364	gene	gene4004	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4006
AHA_4007	AHA_4007		AHA_4007	4445213	4445842	-	dihydroxyacetone kinase%2C L subunit	identified by match to protein family HMM PF02734%3B match to protein family HMM TIGR02365	gene	gene4005	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4007
AHA_4008	AHA_4008	dhaK	dhaK	4445858	4446928	-	dihydroxyacetone kinase%2C DhaK subunit	identified by match to protein family HMM PF02733%3B match to protein family HMM TIGR02363	gene	gene4006	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4008
AHA_4009	AHA_4009		AHA_4009	4447160	4448503	-	inner membrane protein YjcD	identified by match to protein family HMM PF00860%3B match to protein family HMM PF00916	gene	gene4007	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4009
AHA_4010	AHA_4010		AHA_4010	4448745	4449077	+	phosphoribosylaminoimidazole carboxylase ATPase subunit	identified by match to protein family HMM PF07883	gene	gene4008	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4010
AHA_4011	AHA_4011		AHA_4011	4449170	4449246	-	tRNA-Asp		tRNA	gene4009	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4011
AHA_4012	AHA_4012	rrfI	rrfI	4449344	4449461	-	5S ribosomal RNA		rRNA	gene4010	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4012
AHA_4013	AHA_4013	rrlI	rrlI	4449538	4452433	-	23S ribosomal RNA		rRNA	gene4011	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4013
AHA_4014	AHA_4014		AHA_4014	4452666	4452741	-	tRNA-Ala		tRNA	gene4012	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4014
AHA_4015	AHA_4015		AHA_4015	4452752	4452828	-	tRNA-Ile		tRNA	gene4013	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4015
AHA_4016	AHA_4016	rrsI	rrsI	4452902	4454438	-	16S ribosomal RNA		rRNA	gene4014	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4016
AHA_4017	AHA_4017		AHA_4017	4454846	4455427	-	D%2CD-heptose 1%2C7-bisphosphate phosphatase	identified by match to protein family HMM TIGR00213%3B match to protein family HMM TIGR01656%3B match to protein family HMM TIGR01662	gene	gene4015	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4017
AHA_4018	AHA_4018	tuf-1	tuf-1	4455501	4456685	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene4016	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4018
AHA_4019	AHA_4019	fusA	fusA	4456740	4458845	-	translation elongation factor G	identified by match to protein family HMM PF00009%3B match to protein family HMM PF00679%3B match to protein family HMM PF03144%3B match to protein family HMM PF03764%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00484	gene	gene4017	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4019
AHA_4020	AHA_4020	rpsG	rpsG	4458921	4459391	-	ribosomal protein S7	identified by match to protein family HMM PF00177%3B match to protein family HMM TIGR01029	gene	gene4018	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4020
AHA_4021	AHA_4021	rpsL	rpsL	4459485	4459859	-	ribosomal protein S12	identified by match to protein family HMM PF00164%3B match to protein family HMM TIGR00981	gene	gene4019	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4021
AHA_4022	AHA_4022		AHA_4022	4460043	4460351	-	conserved hypothetical protein	identified by match to protein family HMM TIGR03011	gene	gene4020	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4022
AHA_4023	AHA_4023		AHA_4023	4460329	4460685	-	DsrF protein	identified by match to protein family HMM PF02635%3B match to protein family HMM TIGR03010	gene	gene4021	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4023
AHA_4024	AHA_4024		AHA_4024	4460695	4461087	-	intracellular sulfur oxidation protein DsrE	identified by match to protein family HMM PF02635%3B match to protein family HMM TIGR03012	gene	gene4022	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4024
AHA_4025	AHA_4025		AHA_4025	4461174	4461554	-	endoribonuclease L-PSP%2C putative	identified by match to protein family HMM PF01042%3B match to protein family HMM TIGR00004	gene	gene4023	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4025
AHA_4026	AHA_4026		AHA_4026	4461580	4462296	-	MukF protein		gene	gene4024	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4026
AHA_4027	AHA_4027	rpoC	rpoC	4462494	4466798	-	DNA-directed RNA polymerase%2C beta' subunit	identified by match to protein family HMM PF00623%3B match to protein family HMM PF04983%3B match to protein family HMM PF04997%3B match to protein family HMM PF04998%3B match to protein family HMM PF05000%3B match to protein family HMM TIGR02386	gene	gene4025	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4027
AHA_4028	AHA_4028	rpoB	rpoB	4466890	4470981	-	DNA-directed RNA polymerase%2C beta subunit	identified by match to protein family HMM PF00562%3B match to protein family HMM PF04560%3B match to protein family HMM PF04561%3B match to protein family HMM PF04563%3B match to protein family HMM PF04565%3B match to protein family HMM TIGR02013	gene	gene4026	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4028
AHA_4029	AHA_4029	rplL	rplL	4471143	4471508	-	ribosomal protein L7/L12	identified by match to protein family HMM PF00542%3B match to protein family HMM TIGR00855	gene	gene4027	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4029
AHA_4030	AHA_4030		AHA_4030	4471560	4472060	-	50S ribosomal subunit protein L10	identified by match to protein family HMM PF00466	gene	gene4028	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4030
AHA_4031	AHA_4031	rplA	rplA	4472317	4473018	-	ribosomal protein L1	identified by match to protein family HMM PF00687%3B match to protein family HMM TIGR01169	gene	gene4029	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4031
AHA_4032	AHA_4032	rplK	rplK	4473023	4473451	-	ribosomal protein L11	identified by match to protein family HMM PF00298%3B match to protein family HMM PF03946%3B match to protein family HMM TIGR01632	gene	gene4030	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4032
AHA_4033	AHA_4033	nusG	nusG	4473585	4474136	-	transcription termination/antitermination factor NusG	identified by match to protein family HMM PF00467%3B match to protein family HMM PF02357%3B match to protein family HMM TIGR00922	gene	gene4031	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4033
AHA_4034	AHA_4034	secE	secE	4474146	4474517	-	preprotein translocase%2C SecE subunit	identified by similarity to SP:P16920%3B match to protein family HMM PF00584%3B match to protein family HMM TIGR00964	gene	gene4032	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4034
AHA_4035	AHA_4035		AHA_4035	4474578	4474654	-	tRNA-Trp		tRNA	gene4033	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4035
AHA_4036	AHA_4036	tuf-2	tuf-2	4474708	4475892	-	translation elongation factor Tu	identified by match to protein family HMM PF00009%3B match to protein family HMM PF03143%3B match to protein family HMM PF03144%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00485	gene	gene4034	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4036
AHA_4037	AHA_4037		AHA_4037	4476064	4476138	-	tRNA-Gly		tRNA	gene4035	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4037
AHA_4038	AHA_4038		AHA_4038	4476177	4476261	-	tRNA-Tyr		tRNA	gene4036	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4038
AHA_4039	AHA_4039	coaA	coaA	4476523	4477461	+	pantothenate kinase	identified by similarity to SP:P0A6I3%3B match to protein family HMM PF00485%3B match to protein family HMM TIGR00554	gene	gene4037	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4039
AHA_4040	AHA_4040		AHA_4040	4477537	4478502	-	BirA bifunctional protein	identified by similarity to SP:P06709%3B match to protein family HMM PF01022%3B match to protein family HMM PF02082%3B match to protein family HMM PF02237%3B match to protein family HMM PF03099%3B match to protein family HMM TIGR00121	gene	gene4038	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4040
AHA_4041	AHA_4041	murB	murB	4478499	4479536	-	UDP-N-acetylenolpyruvoylglucosamine reductase	identified by match to protein family HMM PF01565%3B match to protein family HMM PF02873%3B match to protein family HMM TIGR00179	gene	gene4039	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4041
AHA_4042	AHA_4042		AHA_4042	4479664	4480317	+	KtrA	identified by match to protein family HMM PF02080%3B match to protein family HMM PF02254	gene	gene4040	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4042
AHA_4043	AHA_4043		AHA_4043	4480314	4481669	+	KtrB	identified by match to protein family HMM PF02386%3B match to protein family HMM TIGR00933	gene	gene4041	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4043
AHA_4044	AHA_4044		AHA_4044	4481697	4482524	-	transcriptional regulator%2C AraC family	identified by match to protein family HMM PF00165	gene	gene4042	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4044
AHA_4045	AHA_4045		AHA_4045	4482625	4483158	+	alkylhydroperoxidase AhpD domain protein	identified by match to protein family HMM PF02627%3B match to protein family HMM TIGR00778	gene	gene4043	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4045
AHA_4046	AHA_4046		AHA_4046	4483172	4483606	+	MC21 protein	identified by match to protein family HMM PF04224	gene	gene4044	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4046
AHA_4047	AHA_4047	topB	topB	4483649	4485619	-	DNA topoisomerase III	identified by match to protein family HMM PF01131%3B match to protein family HMM PF01751%3B match to protein family HMM TIGR01056	gene	gene4045	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4047
AHA_4048	AHA_4048		AHA_4048	4485984	4487114	+	cytochrome c-type protein TorC	identified by match to protein family HMM PF03264	gene	gene4046	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4048
AHA_4049	AHA_4049		AHA_4049	4487137	4489617	+	molybdopterin guanine dinucleotide-containing S/N-oxide reductase family protein	identified by match to protein family HMM PF00384%3B match to protein family HMM PF01568%3B match to protein family HMM TIGR00509%3B match to protein family HMM TIGR01409	gene	gene4047	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4049
AHA_4050	AHA_4050		AHA_4050	4489760	4490221	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4048	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4050
AHA_4051	AHA_4051		AHA_4051	4490263	4491612	-	sensor histidine kinase	identified by match to protein family HMM PF02518	gene	gene4049	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4051
AHA_4052	AHA_4052		AHA_4052	4491650	4492306	-	two-component system%2C regulatory protein	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene4050	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4052
AHA_4053	AHA_4053		AHA_4053	4492393	4492725	-	conserved hypothetical protein		gene	gene4051	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4053
AHA_4054	AHA_4054		AHA_4054	4492789	4493034	+	conserved hypothetical protein		gene	gene4052	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4054
AHA_4055	AHA_4055		AHA_4055	4493079	4493711	-	membrane protein YedZ	identified by match to protein family HMM PF01794	gene	gene4053	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4055
AHA_4056	AHA_4056		AHA_4056	4493731	4494732	-	molybdopterin oxidoreductase family protein	identified by match to protein family HMM PF00174%3B match to protein family HMM TIGR01409	gene	gene4054	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4056
AHA_4057	AHA_4057		AHA_4057	4494804	4494899	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4055	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4057
AHA_4058	AHA_4058		AHA_4058	4495103	4495585	+	chloride channel protein EriC	identified by match to protein family HMM PF06496	gene	gene4056	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4058
AHA_4059	AHA_4059		AHA_4059	4495658	4496938	-	transcriptional regulatory protein ZraR	identified by similarity to SP:P14375%3B match to protein family HMM PF00072%3B match to protein family HMM PF00158%3B match to protein family HMM PF02954	gene	gene4057	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4059
AHA_4060	AHA_4060		AHA_4060	4496935	4497450	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4058	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4060
AHA_4061	AHA_4061		AHA_4061	4497459	4498859	-	sensor histidine kinase	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene4059	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4061
AHA_4062	AHA_4062		AHA_4062	4499180	4499695	+	7%2C 8-dihydro-6-hydroxymethylpterin-pyrophosphokinase	identified by match to protein family HMM TIGR01498	gene	gene4060	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4062
AHA_4063	AHA_4063		AHA_4063	4499699	4500403	-	pteridine reductase 1	identified by match to protein family HMM PF00106	gene	gene4061	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4063
AHA_4064	AHA_4064		AHA_4064	4500924	4501460	-	conserved hypothetical protein		gene	gene4063	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4064
AHA_4065	AHA_4065		AHA_4065	4500523	4500927	+	CBS domain protein	identified by match to protein family HMM PF00571	gene	gene4062	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4065
AHA_4066	AHA_4066		AHA_4066	4501546	4502310	+	glutamine transport system substrate-binding protein%2C putative		gene	gene4064	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4066
AHA_4067	AHA_4067	asnC	asnC	4502405	4502866	-	regulatory protein AsnC	identified by similarity to SP:P03809%3B match to protein family HMM PF01037	gene	gene4065	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4067
AHA_4068	AHA_4068	asnA	asnA	4502900	4504012	+	aspartate--ammonia ligase	identified by match to protein family HMM PF03590%3B match to protein family HMM TIGR00669	gene	gene4066	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4068
AHA_4069	AHA_4069		AHA_4069	4504023	4504136	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4067	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4069
AHA_4070	AHA_4070		AHA_4070	4504222	4505046	-	metallo-beta-lactamase superfamily protein	identified by match to protein family HMM PF00753	gene	gene4068	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4070
AHA_4071	AHA_4071	clpB	clpB	4505107	4507680	-	ATP-dependent chaperone protein ClpB	identified by similarity to SP:P63284%3B match to protein family HMM PF00004%3B match to protein family HMM PF02861%3B match to protein family HMM PF07724%3B match to protein family HMM PF07728	gene	gene4069	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4071
AHA_4072	AHA_4072		AHA_4072	4507852	4508589	-	conserved hypothetical protein	identified by match to protein family HMM PF02578%3B match to protein family HMM TIGR00726	gene	gene4070	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4072
AHA_4073	AHA_4073		AHA_4073	4508708	4509688	-	ribosomal large subunit pseudouridine synthase D	identified by match to protein family HMM PF00849%3B match to protein family HMM PF01479%3B match to protein family HMM TIGR00005	gene	gene4071	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4073
AHA_4074	AHA_4074		AHA_4074	4509644	4510561	+	lipoprotein%2C ComL family		gene	gene4072	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4074
AHA_4075	AHA_4075		AHA_4075	4510710	4512038	-	coenzyme A disulfide reductase	identified by match to protein family HMM PF00070%3B match to protein family HMM PF01266%3B match to protein family HMM PF02852%3B match to protein family HMM PF07992	gene	gene4073	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4075
AHA_4076	AHA_4076		AHA_4076	4512132	4513532	-	sodium:dicarboxylate symporter family	identified by match to protein family HMM PF00375	gene	gene4074	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4076
AHA_4077	AHA_4077		AHA_4077	4513698	4515011	-	conserved protein	identified by match to protein family HMM PF06354	gene	gene4075	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4077
AHA_4078	AHA_4078		AHA_4078	4515317	4516069	-	periplasmic binding protein%2C putative		gene	gene4076	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4078
AHA_4079	AHA_4079	pntB	pntB	4516166	4517650	-	NAD(P) transhydrogenase%2C beta subunit	identified by match to protein family HMM PF02233	gene	gene4077	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4079
AHA_4080	AHA_4080	pntA	pntA	4517662	4519188	-	NAD(P) transhydrogenase%2C alpha subunit	identified by match to protein family HMM PF01262%3B match to protein family HMM PF05222%3B match to protein family HMM TIGR00561	gene	gene4078	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4080
AHA_4081	AHA_4081		AHA_4081	4519696	4520898	-	alcohol dehydrogenase%2C iron-containing	identified by match to protein family HMM PF00465	gene	gene4079	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4081
AHA_4082	AHA_4082		AHA_4082	4521006	4521908	+	putative HTH-type transcriptional regulator YqhC	identified by match to protein family HMM PF00165%3B match to protein family HMM PF06719	gene	gene4080	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4082
AHA_4083	AHA_4083		AHA_4083	4522504	4524396	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672%3B match to protein family HMM PF02743	gene	gene4081	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4083
AHA_4084	AHA_4084		AHA_4084	4524647	4526017	-	phosphatidylserine decarboxylase	identified by match to protein family HMM PF02666	gene	gene4082	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4084
AHA_4085	AHA_4085		AHA_4085	4526310	4526386	-	tRNA-Trp		tRNA	gene4083	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4085
AHA_4086	AHA_4086		AHA_4086	4526595	4527137	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4084	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4086
AHA_4087	AHA_4087	pyrB	pyrB	4527403	4528332	+	aspartate carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00670	gene	gene4085	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4087
AHA_4088	AHA_4088	pyrI	pyrI	4528349	4528813	+	aspartate carbamoyltransferase%2C regulatory subunit	identified by match to protein family HMM PF01948%3B match to protein family HMM PF02748%3B match to protein family HMM TIGR00240	gene	gene4086	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4088
AHA_4089	AHA_4089		AHA_4089	4528950	4529522	+	arginine repressor	identified by match to protein family HMM PF01316%3B match to protein family HMM PF02863	gene	gene4087	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4089
AHA_4090	AHA_4090		AHA_4090	4529701	4531104	-	putative transporter	identified by match to protein family HMM PF03606	gene	gene4088	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4090
AHA_4091	AHA_4091	argF-2	argF-2	4531228	4532232	-	ornithine carbamoyltransferase	identified by match to protein family HMM PF00185%3B match to protein family HMM PF02729%3B match to protein family HMM TIGR00658	gene	gene4089	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4091
AHA_4092	AHA_4092	arcC-2	arcC-2	4532363	4533289	-	carbamate kinase	identified by match to protein family HMM PF00696%3B match to protein family HMM TIGR00746	gene	gene4090	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4092
AHA_4093	AHA_4093	arcA-2	arcA-2	4533353	4534573	-	arginine deiminase	identified by match to protein family HMM PF02274%3B match to protein family HMM TIGR01078	gene	gene4091	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4093
AHA_4094	AHA_4094		AHA_4094	4535244	4535495	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4092	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4094
AHA_4095	AHA_4095		AHA_4095	4535596	4536243	+	ParA family protein		gene	gene4093	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4095
AHA_4096	AHA_4096		AHA_4096	4536245	4536613	+	transcriptional regulator%2C CopG family		gene	gene4094	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4096
AHA_4097	AHA_4097		AHA_4097	4537215	4538948	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene4095	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4097
AHA_4098	AHA_4098	mglC	mglC	4539000	4540010	-	galactoside ABC transporter%2C permease protein MglC	identified by similarity to SP:P23200%3B match to protein family HMM PF02653	gene	gene4096	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4098
AHA_4099	AHA_4099	mglA	mglA	4540027	4541547	-	galactoside ABC transporter%2C ATP-binding protein	identified by similarity to SP:P0AAG9%3B match to protein family HMM PF00005	gene	gene4097	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4099
AHA_4100	AHA_4100	mglB	mglB	4541602	4542588	-	galactose ABC transporter%2C periplasmic galactose-binding protein	identified by similarity to SP:P02927%3B match to protein family HMM PF00532	gene	gene4098	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4100
AHA_4101	AHA_4101		AHA_4101	4542823	4545900	-	beta-galactosidase	identified by match to protein family HMM PF00703%3B match to protein family HMM PF02836%3B match to protein family HMM PF02837%3B match to protein family HMM PF02929	gene	gene4099	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4101
AHA_4102	AHA_4102	galR	galR	4546119	4547123	-	transcriptional regulator GalR	identified by similarity to SP:P03024%3B match to protein family HMM PF00356%3B match to protein family HMM PF00532	gene	gene4100	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4102
AHA_4103	AHA_4103	galE-2	galE-2	4547328	4548341	+	UDP-glucose 4-epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR01179	gene	gene4101	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4103
AHA_4104	AHA_4104	galT	galT	4548448	4549506	+	galactose-1-phosphate uridylyltransferase	identified by match to protein family HMM PF01087%3B match to protein family HMM PF02744%3B match to protein family HMM TIGR00209	gene	gene4102	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4104
AHA_4105	AHA_4105	galK	galK	4549503	4550651	+	galactokinase	identified by match to protein family HMM PF00288%3B match to protein family HMM TIGR00131	gene	gene4103	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4105
AHA_4106	AHA_4106	galM	galM	4550572	4551708	+	galactose mutarotase	identified by match to protein family HMM PF01263%3B match to protein family HMM TIGR02636	gene	gene4104	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4106
AHA_4107	AHA_4107		AHA_4107	4551894	4552904	+	oxidoreductase%2C aldo/keto reductase family	identified by match to protein family HMM PF00248	gene	gene4105	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4107
AHA_4108	AHA_4108		AHA_4108	4553085	4553900	+	undecaprenol kinase%2C putative	identified by match to protein family HMM PF02673%3B match to protein family HMM TIGR00753	gene	gene4106	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4108
AHA_4109	AHA_4109		AHA_4109	4553962	4554627	-	transcriptional activator ChrR	identified by match to protein family HMM TIGR02451	gene	gene4107	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4109
AHA_4110	AHA_4110		AHA_4110	4554620	4555300	-	RNA polymerase sigma-70 factor%2C ECF subfamily	identified by match to protein family HMM PF04542%3B match to protein family HMM PF04545%3B match to protein family HMM TIGR02937	gene	gene4108	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4110
AHA_4111	AHA_4111		AHA_4111	4555322	4555981	-	ATP-dependent protease La (LON) domain protein	identified by match to protein family HMM PF02190	gene	gene4109	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4111
AHA_4112	AHA_4112	argS	argS	4556202	4557947	+	arginyl-tRNA synthetase	identified by match to protein family HMM PF00750%3B match to protein family HMM PF03485%3B match to protein family HMM PF05746%3B match to protein family HMM TIGR00456	gene	gene4110	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4112
AHA_4113	AHA_4113		AHA_4113	4557951	4558790	+	cell division protein	identified by match to protein family HMM PF05036	gene	gene4111	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4113
AHA_4114	AHA_4114	hslV	hslV	4558979	4559512	+	ATP-dependent protease HslV	identified by similarity to SP:P43772%3B match to protein family HMM PF00227	gene	gene4112	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4114
AHA_4115	AHA_4115	hslU	hslU	4559605	4560933	+	heat shock protein HslVU%2C ATPase subunit HslU	identified by match to protein family HMM PF07724%3B match to protein family HMM TIGR00390	gene	gene4113	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4115
AHA_4116	AHA_4116		AHA_4116	4561026	4562450	-	transporter%2C major facilitator family	identified by match to protein family HMM PF07690	gene	gene4114	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4116
AHA_4117	AHA_4117		AHA_4117	4562573	4563529	+	regulatory protein%2C LysR:LysR%2C substrate-binding	identified by match to protein family HMM PF00126%3B match to protein family HMM PF03466	gene	gene4115	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4117
AHA_4118	AHA_4118	nirB-2	nirB-2	4563784	4566363	+	nitrite reductase [NAD(P)H]%2C large subunit	identified by similarity to SP:P08201%3B match to protein family HMM PF00070%3B match to protein family HMM PF01077%3B match to protein family HMM PF03460%3B match to protein family HMM PF04324%3B match to protein family HMM PF07992%3B match to protein family HMM TIGR02374	gene	gene4116	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4118
AHA_4119	AHA_4119	nirD	nirD	4566470	4566787	+	nitrite reductase [NAD(P)H]%2C small subunit	identified by match to protein family HMM TIGR02378	gene	gene4117	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4119
AHA_4120	AHA_4120		AHA_4120	4566839	4567651	+	probable nitrite transporter	identified by match to protein family HMM PF01226%3B match to protein family HMM TIGR00790	gene	gene4118	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4120
AHA_4121	AHA_4121		AHA_4121	4567664	4569070	+	siroheme synthase	identified by match to protein family HMM PF00590%3B match to protein family HMM TIGR01469%3B match to protein family HMM TIGR01470	gene	gene4119	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4121
AHA_4122	AHA_4122	mgtE-2	mgtE-2	4569143	4570627	+	magnesium transporter	identified by match to protein family HMM PF00571%3B match to protein family HMM PF01769%3B match to protein family HMM PF03448%3B match to protein family HMM TIGR00400	gene	gene4120	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4122
AHA_4123	AHA_4123		AHA_4123	4570685	4572538	-	methyl-accepting chemotaxis protein	identified by match to protein family HMM PF00015%3B match to protein family HMM PF00672	gene	gene4121	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4123
AHA_4124	AHA_4124	rraA-2	rraA-2	4572685	4573170	+	regulator of ribonuclease activity A	identified by similarity to SP:P0A8R0%3B match to protein family HMM PF03737%3B match to protein family HMM TIGR01935	gene	gene4122	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4124
AHA_4125	AHA_4125		AHA_4125	4573439	4574113	-	putative membrane protein	identified by match to protein family HMM PF02592%3B match to protein family HMM TIGR00697	gene	gene4123	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4125
AHA_4126	AHA_4126		AHA_4126	4574246	4574569	-	conserved hypothetical protein		gene	gene4124	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4126
AHA_4127	AHA_4127		AHA_4127	4574544	4575971	-	YdiU family protein	identified by match to protein family HMM PF02696	gene	gene4125	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4127
AHA_4128	AHA_4128		AHA_4128	4576075	4576374	+	cytochrome c-552	identified by match to protein family HMM PF00034	gene	gene4126	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4128
AHA_4129	AHA_4129	recQ	recQ	4576443	4578278	-	ATP-dependent DNA helicase RecQ	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF00570%3B match to protein family HMM TIGR00614%3B match to protein family HMM TIGR01389	gene	gene4127	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4129
AHA_4130	AHA_4130		AHA_4130	4578421	4578876	+	thioesterase (4HBT) superfamily enzyme	identified by match to protein family HMM PF03061%3B match to protein family HMM TIGR00369	gene	gene4128	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4130
AHA_4131	AHA_4131		AHA_4131	4579001	4579528	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4129	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4131
AHA_4132	AHA_4132		AHA_4132	4579858	4579934	-	tRNA-Pro		tRNA	gene4130	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4132
AHA_4133	AHA_4133		AHA_4133	4580082	4580792	-	mosc domain protein	identified by match to protein family HMM PF03473%3B match to protein family HMM PF03475	gene	gene4131	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4133
AHA_4134	AHA_4134	potI	potI	4580838	4581680	-	putrescine ABC transporter%2C permease protein PotI	identified by similarity to SP:P31136%3B match to protein family HMM PF00528	gene	gene4132	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4134
AHA_4135	AHA_4135	potH	potH	4581677	4582579	-	putrescine ABC transporter%2C permease protein PotH	identified by similarity to SP:P31135%3B match to protein family HMM PF00528	gene	gene4133	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4135
AHA_4136	AHA_4136		AHA_4136	4582579	4583733	-	putrescine transport ATP-binding protein PotG	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01187	gene	gene4134	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4136
AHA_4137	AHA_4137	potD	potD	4583809	4584894	-	spermidine/putrescine ABC transporter%2C periplasmic spermidine/putrescine-binding protein	identified by match to protein family HMM PF01547	gene	gene4135	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4137
AHA_4138	AHA_4138	potF	potF	4585012	4586109	-	putrescine ABC transporter%2C periplasmic putrescine-binding protein	identified by similarity to SP:P31133%3B match to protein family HMM PF01547	gene	gene4136	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4138
AHA_4139	AHA_4139		AHA_4139	4586164	4587525	-	aminotransferase%2C class III	identified by match to protein family HMM PF00202	gene	gene4137	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4139
AHA_4140	AHA_4140		AHA_4140	4587713	4589044	-	glutamine synthetase	identified by match to protein family HMM PF00120	gene	gene4138	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4140
AHA_4141	AHA_4141		AHA_4141	4589513	4589899	+	putative RNA polymerase-binding protein DksA	identified by match to protein family HMM PF01258	gene	gene4139	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4141
AHA_4142	AHA_4142		AHA_4142	4590070	4590927	+	conserved hypothetical protein		gene	gene4140	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4142
AHA_4143	AHA_4143		AHA_4143	4590979	4591425	+	conserved hypothetical protein	identified by similarity to GB:AAS70268.1%3B match to protein family HMM PF06127	gene	gene4141	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4143
AHA_4144	AHA_4144		AHA_4144	4591447	4591926	+	CreA	identified by match to protein family HMM PF05981	gene	gene4142	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4144
AHA_4145	AHA_4145		AHA_4145	4592004	4592993	+	D-lactate dehydrogenase	identified by match to protein family HMM PF00389%3B match to protein family HMM PF02826	gene	gene4143	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4145
AHA_4146	AHA_4146		AHA_4146	4593085	4594464	+	hypothetical chaperone protein YegD		gene	gene4144	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4146
AHA_4147	AHA_4147		AHA_4147	4594436	4595038	+	heat shock protein HslJ	identified by match to protein family HMM PF03724	gene	gene4145	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4147
AHA_4148	AHA_4148		AHA_4148	4595109	4595957	+	conserved hypothetical protein		gene	gene4146	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4148
AHA_4149	AHA_4149		AHA_4149	4596071	4597792	+	maltodextrin glucosidase	identified by match to protein family HMM PF00128	gene	gene4147	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4149
AHA_4150	AHA_4150		AHA_4150	4598015	4599019	+	lipopolysaccharide O-Ag biosynthesis protein FlmA	identified by similarity to GB:AAD45656.2%3B match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF02719%3B match to protein family HMM PF04321%3B match to protein family HMM PF07993	gene	gene4148	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4150
AHA_4151	AHA_4151	flmB	flmB	4599016	4600149	+	lipopolysaccharide O-Ag biosynthesis protein FlmB	identified by similarity to GB:AAD45657.1%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212	gene	gene4149	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4151
AHA_4152	AHA_4152		AHA_4152	4600278	4601033	-	transferase%2C putative	identified by match to protein family HMM PF00483	gene	gene4150	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4152
AHA_4153	AHA_4153		AHA_4153	4601040	4601678	-	conserved hypothetical protein		gene	gene4151	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4153
AHA_4154	AHA_4154		AHA_4154	4601675	4604071	-	conserved hypothetical protein	identified by similarity to GB:AAP78033.1	gene	gene4152	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4154
AHA_4155	AHA_4155		AHA_4155	4604068	4604790	-	methionyl-tRNA formyltransferase homolog		gene	gene4153	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4155
AHA_4156	AHA_4156		AHA_4156	4604787	4605362	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4154	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4156
AHA_4157	AHA_4157		AHA_4157	4605362	4605883	-	adenylyl-sulfate kinase	identified by match to protein family HMM PF01583	gene	gene4155	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4157
AHA_4158	AHA_4158		AHA_4158	4605931	4606887	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4156	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4158
AHA_4159	AHA_4159		AHA_4159	4606989	4608884	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4157	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4159
AHA_4160	AHA_4160		AHA_4160	4608995	4610074	-	conserved hypothetical protein		gene	gene4158	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4160
AHA_4161	AHA_4161		AHA_4161	4610187	4610966	-	cephalosporin hydroxylase superfamily	identified by match to protein family HMM PF04989	gene	gene4159	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4161
AHA_4162	AHA_4162		AHA_4162	4610986	4612092	-	spore coat polysaccharide biosynthesis protein SpsC	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01041%3B match to protein family HMM PF01212	gene	gene4160	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4162
AHA_4163	AHA_4163		AHA_4163	4612089	4613312	-	conserved hypothetical protein	identified by similarity to GB:BAA16904.1	gene	gene4161	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4163
AHA_4164	AHA_4164	rfbC-2	rfbC-2	4613309	4613872	-	dTDP-4-dehydrorhamnose 3%2C5-epimerase	identified by match to protein family HMM PF00908	gene	gene4162	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4164
AHA_4165	AHA_4165	rfbG	rfbG	4613869	4614936	-	CDP-glucose 4%2C6-dehydratase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02622	gene	gene4163	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4165
AHA_4166	AHA_4166	rfbF	rfbF	4614933	4615706	-	glucose-1-phosphate cytidylyltransferase	identified by match to protein family HMM PF00483%3B match to protein family HMM TIGR02623	gene	gene4164	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4166
AHA_4167	AHA_4167		AHA_4167	4615748	4616581	-	glycosyl transferase%2C group 2 family protein	identified by match to protein family HMM PF00535	gene	gene4165	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4167
AHA_4168	AHA_4168		AHA_4168	4616605	4617909	-	UDP-N-acetyl-D-mannosamine dehydrogenase	identified by match to protein family HMM PF00984%3B match to protein family HMM PF03446%3B match to protein family HMM PF03720%3B match to protein family HMM PF03721%3B match to protein family HMM TIGR03026	gene	gene4166	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4168
AHA_4169	AHA_4169		AHA_4169	4617943	4619079	-	glycosyl transferase%2C group 1 family protein	identified by match to protein family HMM PF00534	gene	gene4167	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4169
AHA_4170	AHA_4170		AHA_4170	4620296	4621396	-	glycosyl transferase%2C family 8	identified by match to protein family HMM PF01501	gene	gene4168	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4170
AHA_4171	AHA_4171		AHA_4171	4621433	4622389	-	putative glycosyltransferase	identified by match to protein family HMM PF00535	gene	gene4169	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4171
AHA_4172	AHA_4172		AHA_4172	4622548	4623735	-	putative acyl-CoA reductase LuxC		gene	gene4170	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4172
AHA_4173	AHA_4173		AHA_4173	4623732	4624790	-	long-chain-fatty-acid--luciferin-component ligase%2C Acyl-protein synthase		gene	gene4171	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4173
AHA_4174	AHA_4174		AHA_4174	4624790	4626160	-	long-chain fatty acid-CoA ligase	identified by match to protein family HMM PF00501	gene	gene4172	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4174
AHA_4175	AHA_4175		AHA_4175	4626160	4626909	-	oxidoreductase%2C short chain dehydrogenase/reductase family	identified by match to protein family HMM PF00106	gene	gene4173	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4175
AHA_4176	AHA_4176		AHA_4176	4626909	4627142	-	conserved hypothetical protein	identified by similarity to GB:2203284A	gene	gene4174	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4176
AHA_4177	AHA_4177		AHA_4177	4627139	4627675	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4175	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4177
AHA_4178	AHA_4178		AHA_4178	4627840	4628535	+	NeuA protein	identified by match to protein family HMM PF02348	gene	gene4176	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4178
AHA_4179	AHA_4179		AHA_4179	4628525	4629781	+	putative FlmD	identified by similarity to GB:AAD45659.1	gene	gene4177	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4179
AHA_4180	AHA_4180	nueB	nueB	4629788	4630834	+	pseudaminic acid synthase%2C NeuB	identified by similarity to GB:AAD45660.1%3B match to protein family HMM PF01354%3B match to protein family HMM PF03102	gene	gene4178	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4180
AHA_4181	AHA_4181		AHA_4181	4630827	4632122	+	conserved hypothetical protein	identified by similarity to GB:AAY90924.1	gene	gene4179	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4181
AHA_4182	AHA_4182		AHA_4182	4632119	4632379	+	conserved hypothetical protein		gene	gene4180	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4182
AHA_4183	AHA_4183		AHA_4183	4632497	4633858	-	conserved hypothetical protein	identified by similarity to GB:AAR35342.1	gene	gene4182	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4183
AHA_4184	AHA_4184		AHA_4184	4632415	4632507	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4181	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4184
AHA_4185	AHA_4185		AHA_4185	4633855	4634259	-	glyoxalase family protein	identified by match to protein family HMM PF00903	gene	gene4183	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4185
AHA_4186	AHA_4186		AHA_4186	4634249	4635013	-	aminoglycoside 3-N-acetyltransferase family protein		gene	gene4184	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4186
AHA_4187	AHA_4187		AHA_4187	4635010	4635234	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4185	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4187
AHA_4188	AHA_4188		AHA_4188	4635227	4636903	-	FkbH domain protein	identified by match to protein family HMM TIGR01681%3B match to protein family HMM TIGR01686	gene	gene4186	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4188
AHA_4189	AHA_4189		AHA_4189	4637007	4637540	-	ATP:cob(I)alamin adenosyltransferase%2C putative	identified by match to protein family HMM PF01923	gene	gene4187	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4189
AHA_4190	AHA_4190		AHA_4190	4637628	4638770	-	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4188	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4190
AHA_4191	AHA_4191	trmA	trmA	4638941	4640074	+	tRNA (uracil-5-)-methyltransferase	identified by match to protein family HMM PF05958%3B match to protein family HMM TIGR02143	gene	gene4189	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4191
AHA_4192	AHA_4192		AHA_4192	4640264	4641022	+	transcriptional regulatory protein RstA	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene4190	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4192
AHA_4193	AHA_4193		AHA_4193	4641139	4642464	+	sensor protein RstB	identified by match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene4191	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4193
AHA_4194	AHA_4194		AHA_4194	4642474	4642701	+	hypothetical protein	identified by Glimmer2%3B putative	gene	gene4192	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4194
AHA_4195	AHA_4195		AHA_4195	4642778	4644034	-	NADP-dependent malic enzyme	identified by match to protein family HMM PF00390%3B match to protein family HMM PF03949	gene	gene4193	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4195
AHA_4196	AHA_4196		AHA_4196	4644216	4645673	-	nucleoside-diphosphate-sugar epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF05368	gene	gene4194	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4196
AHA_4197	AHA_4197	rpmE-2	rpmE-2	4645817	4646044	-	ribosomal protein L31	identified by match to protein family HMM PF01197%3B match to protein family HMM TIGR00105	gene	gene4195	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4197
AHA_4198	AHA_4198	priA	priA	4646180	4648387	+	primosomal protein N'	identified by match to protein family HMM PF00270%3B match to protein family HMM PF00271%3B match to protein family HMM PF04851%3B match to protein family HMM TIGR00595	gene	gene4196	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4198
AHA_4199	AHA_4199		AHA_4199	4648467	4649567	-	conserved hypothetical protein		gene	gene4197	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4199
AHA_4200	AHA_4200		AHA_4200	4649744	4650850	-	outer-membrane protein A	identified by match to protein family HMM PF00691%3B match to protein family HMM PF01389	gene	gene4198	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4200
AHA_4201	AHA_4201	ilvA	ilvA	4651098	4652618	-	threonine ammonia-lyase%2C biosynthetic	identified by match to protein family HMM PF00291%3B match to protein family HMM PF00585%3B match to protein family HMM TIGR01124	gene	gene4199	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4201
AHA_4202	AHA_4202	ilvD	ilvD	4652622	4654589	-	dihydroxy-acid dehydratase	identified by match to protein family HMM PF00920%3B match to protein family HMM TIGR00110	gene	gene4200	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4202
AHA_4203	AHA_4203	ilvE	ilvE	4654608	4655552	-	branched-chain amino acid aminotransferase	identified by match to protein family HMM PF01063%3B match to protein family HMM TIGR01122	gene	gene4201	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4203
AHA_4204	AHA_4204	ilvB-2	ilvB-2	4655813	4657459	-	acetolactate synthase%2C large subunit%2C biosynthetic type	identified by match to protein family HMM PF00205%3B match to protein family HMM PF02775%3B match to protein family HMM PF02776%3B match to protein family HMM TIGR00118	gene	gene4202	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4204
AHA_4205	AHA_4205		AHA_4205	4657546	4657644	-	ilvBEDA operon leader peptide		gene	gene4203	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4205
AHA_4206	AHA_4206		AHA_4206	4657843	4659357	+	putative Mg chelatase homolog	identified by match to protein family HMM PF01078%3B match to protein family HMM PF07728%3B match to protein family HMM TIGR00368	gene	gene4204	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4206
AHA_4207	AHA_4207		AHA_4207	4659478	4660392	+	acetyltransferase	identified by match to protein family HMM PF01553	gene	gene4205	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4207
AHA_4208	AHA_4208		AHA_4208	4661288	4661773	-	hypothetical protein	identified by match to protein family HMM PF04463	gene	gene4207	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4208
AHA_4209	AHA_4209		AHA_4209	4660308	4661342	+	phosphate acyltransferase family protein	identified by match to protein family HMM PF01553	gene	gene4206	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4209
AHA_4210	AHA_4210		AHA_4210	4661871	4662521	-	MutT/nudix family protein	identified by match to protein family HMM PF00293	gene	gene4208	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4210
AHA_4211	AHA_4211		AHA_4211	4662597	4663232	+	pyrazinamidase/nicotinamidase	identified by match to protein family HMM PF00857	gene	gene4209	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4211
AHA_4212	AHA_4212	pncB	pncB	4663334	4664512	+	nicotinate phosphoribosyltransferase	identified by match to protein family HMM PF04095%3B match to protein family HMM TIGR01514	gene	gene4210	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4212
AHA_4213	AHA_4213	phnD	phnD	4664637	4665482	+	phosphonate ABC transporter%2C periplasmic phosphonate-binding protein	identified by match to protein family HMM TIGR01098	gene	gene4211	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4213
AHA_4214	AHA_4214	phnC	phnC	4665479	4666240	+	phosphonate ABC transporter%2C ATP-binding protein	identified by similarity to SP:Q88PM5%3B match to protein family HMM PF00005%3B match to protein family HMM TIGR02315	gene	gene4212	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4214
AHA_4215	AHA_4215	phnE	phnE	4666240	4667775	+	phosphonate ABC transporter%2C permease protein	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01097	gene	gene4213	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4215
AHA_4216	AHA_4216	dsbA	dsbA	4667879	4668487	-	thiol:disulfide interchange protein DsbA	identified by similarity to SP:P24991%3B match to protein family HMM PF01323	gene	gene4214	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4216
AHA_4217	AHA_4217		AHA_4217	4668625	4669614	-	Phosphotransferase enzyme family	identified by match to protein family HMM PF01636	gene	gene4215	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4217
AHA_4218	AHA_4218	ccoG	ccoG	4669706	4671154	-	cytochrome c oxidase accessory protein CcoG	identified by match to protein family HMM PF00037%3B match to protein family HMM TIGR02745	gene	gene4216	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4218
AHA_4219	AHA_4219		AHA_4219	4671354	4671617	-	conserved hypothetical protein	identified by match to protein family HMM PF06288	gene	gene4217	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4219
AHA_4220	AHA_4220		AHA_4220	4671648	4672763	-	GGDEF domain protein	identified by match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene4218	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4220
AHA_4221	AHA_4221	cueR	cueR	4672929	4673318	-	Cu(I)-responsive transcriptional regulator	identified by similarity to SP:P0A9G4%3B match to protein family HMM PF00376%3B match to protein family HMM TIGR02044	gene	gene4219	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4221
AHA_4222	AHA_4222	copA	copA	4673329	4675749	-	copper-exporting ATPase	identified by match to protein family HMM PF00122%3B match to protein family HMM PF00403%3B match to protein family HMM PF00702%3B match to protein family HMM TIGR01494%3B match to protein family HMM TIGR01511%3B match to protein family HMM TIGR01525	gene	gene4220	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4222
AHA_4223	AHA_4223	pyrE	pyrE	4675930	4676583	-	orotate phosphoribosyltransferase	identified by match to protein family HMM PF00156%3B match to protein family HMM TIGR00336	gene	gene4221	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4223
AHA_4224	AHA_4224	rph	rph	4676658	4677431	-	ribonuclease PH	identified by match to protein family HMM PF01138%3B match to protein family HMM PF03725%3B match to protein family HMM TIGR01966	gene	gene4222	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4224
AHA_4225	AHA_4225		AHA_4225	4677521	4678384	+	conserved hypothetical protein	identified by match to protein family HMM PF03755%3B match to protein family HMM TIGR00255	gene	gene4223	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4225
AHA_4226	AHA_4226		AHA_4226	4679459	4680577	-		putative D-glycero-D-manno-heptosyltransferase%2C authentic frameshift%3B this gene contains a frame shift which is not the result of sequencing error	pseudogene	gene4225	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4226
AHA_4227	AHA_4227		AHA_4227	4678551	4679618	+	putative ADP-heptose:LPS	identified by match to protein family HMM PF01075	gene	gene4224	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4227
AHA_4228	AHA_4228		AHA_4228	4680633	4681571	-	putative heptosyltransferase III		gene	gene4226	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4228
AHA_4229	AHA_4229		AHA_4229	4681750	4682415	-	putative lipooligosaccharide biosynthesis protein LpsA	identified by match to protein family HMM PF01755	gene	gene4227	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4229
AHA_4230	AHA_4230		AHA_4230	4682412	4683626	-	O-antigen polymerase	identified by match to protein family HMM PF04932	gene	gene4228	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4230
AHA_4231	AHA_4231		AHA_4231	4683630	4685480	-	WavL	identified by match to protein family HMM PF01522	gene	gene4229	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4231
AHA_4232	AHA_4232	rfaD	rfaD	4685503	4686459	-	ADP-L-glycero-D-manno-heptose-6-epimerase	identified by match to protein family HMM PF01073%3B match to protein family HMM PF01370%3B match to protein family HMM PF07993%3B match to protein family HMM TIGR02197	gene	gene4230	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4232
AHA_4233	AHA_4233		AHA_4233	4686616	4687260	+	transcriptional regulator%2C TetR family	identified by match to protein family HMM PF00440	gene	gene4231	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4233
AHA_4234	AHA_4234	kbl	kbl	4687376	4688566	+	2-amino-3-ketobutyrate coenzyme A ligase	identified by match to protein family HMM PF00155%3B match to protein family HMM PF00202%3B match to protein family HMM PF00266%3B match to protein family HMM PF00464%3B match to protein family HMM TIGR01822	gene	gene4232	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4234
AHA_4235	AHA_4235	tdh	tdh	4688623	4689651	+	L-threonine 3-dehydrogenase	identified by match to protein family HMM PF00107%3B match to protein family HMM TIGR00692	gene	gene4233	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4235
AHA_4236	AHA_4236		AHA_4236	4689894	4690307	+	cytochrome c5	identified by match to protein family HMM PF00034	gene	gene4234	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4236
AHA_4237	AHA_4237		AHA_4237	4690393	4692678	+	gaf domain/GGDEF domain/eal domain protein	identified by match to protein family HMM PF00563%3B match to protein family HMM PF00990%3B match to protein family HMM TIGR00254	gene	gene4235	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4237
AHA_4238	AHA_4238	rep	rep	4692686	4694698	-	ATP-dependent DNA helicase Rep	identified by match to protein family HMM PF00580%3B match to protein family HMM TIGR01074	gene	gene4236	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4238
AHA_4239	AHA_4239		AHA_4239	4694851	4696071	+	cysteine desulfurase	identified by match to protein family HMM PF00266%3B match to protein family HMM PF01212%3B match to protein family HMM TIGR01979	gene	gene4237	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4239
AHA_4240	AHA_4240		AHA_4240	4696022	4696519	+	SufE protein	identified by match to protein family HMM PF02657	gene	gene4238	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4240
AHA_4241	AHA_4241		AHA_4241	4696537	4697373	-	ThiF domain protein	identified by match to protein family HMM PF00899	gene	gene4239	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4241
AHA_4242	AHA_4242		AHA_4242	4697520	4697596	-	tRNA-Asp		tRNA	gene4240	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4242
AHA_4243	AHA_4243	rrfJ	rrfJ	4697694	4697811	-	5S ribosomal RNA		rRNA	gene4241	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4243
AHA_4244	AHA_4244	rrlJ	rrlJ	4697927	4700822	-	23S ribosomal RNA		rRNA	gene4242	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4244
AHA_4245	AHA_4245		AHA_4245	4701054	4701129	-	tRNA-Glu		tRNA	gene4243	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4245
AHA_4246	AHA_4246	rrsJ	rrsJ	4701331	4702867	-	16S ribosomal RNA		rRNA	gene4244	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4246
AHA_4247	AHA_4247		AHA_4247	4703283	4704401	-	tetratricopeptide repeat domain protein		gene	gene4245	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4247
AHA_4248	AHA_4248	tonB-2	tonB-2	4704464	4705126	-	outer membrane receptor-mediated transport energizer protein TonB	identified by similarity to SP:Q51368%3B match to protein family HMM PF03544%3B match to protein family HMM TIGR01352	gene	gene4246	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4248
AHA_4249	AHA_4249		AHA_4249	4705123	4705524	-	biopolymer transport exbD2 protein	identified by match to protein family HMM PF02472	gene	gene4247	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4249
AHA_4250	AHA_4250		AHA_4250	4705521	4706051	-	TonB system biopolymer transport component	identified by match to protein family HMM PF01618	gene	gene4248	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4250
AHA_4251	AHA_4251		AHA_4251	4706048	4707355	-	TonB system biopolymer transport component	identified by match to protein family HMM PF01618	gene	gene4249	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4251
AHA_4252	AHA_4252		AHA_4252	4707352	4708089	-	chromosome segregation ATPase		gene	gene4250	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4252
AHA_4253	AHA_4253		AHA_4253	4708323	4708934	+	transcriptional activator protein AhyR/asaR	identified by match to protein family HMM PF00196%3B match to protein family HMM PF03472	gene	gene4251	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4253
AHA_4254	AHA_4254	glmS	glmS	4708999	4710831	-	glucosamine--fructose-6-phosphate aminotransferase%2C isomerizing	identified by match to protein family HMM PF00310%3B match to protein family HMM PF01380%3B match to protein family HMM TIGR01135	gene	gene4252	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4254
AHA_4255	AHA_4255	srlR	srlR	4710888	4711661	-	glucitol operon repressor	identified by similarity to SP:P15082%3B match to protein family HMM PF00455%3B match to protein family HMM PF08220	gene	gene4253	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4255
AHA_4256	AHA_4256		AHA_4256	4711784	4712458	+	transcriptional regulatory protein CreB	identified by match to protein family HMM PF00072%3B match to protein family HMM PF00486	gene	gene4254	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4256
AHA_4257	AHA_4257		AHA_4257	4712455	4713876	+	sensor histidine kinase	identified by similarity to SP:P08401%3B match to protein family HMM PF00512%3B match to protein family HMM PF00672%3B match to protein family HMM PF02518	gene	gene4255	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4257
AHA_4258	AHA_4258		AHA_4258	4713960	4714754	+	beta-lactamase	identified by match to protein family HMM PF00905	gene	gene4256	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4258
AHA_4259	AHA_4259		AHA_4259	4714873	4716234	+	inner membrane protein CreD	identified by match to protein family HMM PF06123	gene	gene4257	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4259
AHA_4260	AHA_4260	glmU	glmU	4716285	4717646	-	UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase	identified by match to protein family HMM PF00132%3B match to protein family HMM PF00483%3B match to protein family HMM TIGR01173	gene	gene4258	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4260
AHA_4261	AHA_4261	atpC	atpC	4717741	4718160	-	ATP synthase F1%2C epsilon subunit	identified by match to protein family HMM PF00401%3B match to protein family HMM PF02823%3B match to protein family HMM TIGR01216	gene	gene4259	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4261
AHA_4262	AHA_4262	atpD	atpD	4718188	4719576	-	ATP synthase F1%2C beta subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR01039	gene	gene4260	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4262
AHA_4263	AHA_4263	atpG	atpG	4719610	4720476	-	ATP synthase F1%2C gamma subunit	identified by match to protein family HMM PF00231%3B match to protein family HMM TIGR01146	gene	gene4261	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4263
AHA_4264	AHA_4264	atpA	atpA	4720520	4722061	-	ATP synthase F1%2C alpha subunit	identified by match to protein family HMM PF00006%3B match to protein family HMM PF00306%3B match to protein family HMM PF02874%3B match to protein family HMM TIGR00962	gene	gene4262	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4264
AHA_4265	AHA_4265	atpH	atpH	4722077	4722610	-	ATP synthase F1%2C delta subunit	identified by match to protein family HMM PF00213%3B match to protein family HMM TIGR01145	gene	gene4263	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4265
AHA_4266	AHA_4266	atpF	atpF	4722624	4723094	-	ATP synthase F0%2C B subunit	identified by match to protein family HMM PF00430%3B match to protein family HMM TIGR01144	gene	gene4264	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4266
AHA_4267	AHA_4267	atpE	atpE	4723147	4723389	-	ATP synthase F0%2C C subunit	identified by match to protein family HMM PF00137%3B match to protein family HMM TIGR01260	gene	gene4265	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4267
AHA_4268	AHA_4268	atpB	atpB	4723448	4724230	-	ATP synthase F0%2C A subunit	identified by match to protein family HMM PF00119%3B match to protein family HMM TIGR01131	gene	gene4266	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4268
AHA_4269	AHA_4269	atpI	atpI	4724239	4724631	-	ATP synthase F0%2C I subunit	identified by match to protein family HMM PF03899	gene	gene4267	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4269
AHA_4270	AHA_4270		AHA_4270	4724840	4725748	-	chromosome partitioning protein ParB	identified by match to protein family HMM PF02195%3B match to protein family HMM TIGR00180	gene	gene4268	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4270
AHA_4271	AHA_4271		AHA_4271	4725745	4726548	-	Soj protein	identified by match to protein family HMM PF01656	gene	gene4269	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4271
AHA_4272	AHA_4272	gidB	gidB	4726557	4727201	-	methyltransferase GidB	identified by match to protein family HMM PF02527%3B match to protein family HMM TIGR00138	gene	gene4270	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4272
AHA_4273	AHA_4273	gidA	gidA	4727222	4729111	-	glucose-inhibited division protein A	identified by match to protein family HMM PF01134%3B match to protein family HMM TIGR00136	gene	gene4271	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4273
AHA_4274	AHA_4274		AHA_4274	4729621	4730184	-	protein MioC	identified by match to protein family HMM PF00258	gene	gene4272	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4274
AHA_4275	AHA_4275		AHA_4275	4730433	4732562	+	ferrichrome receptor	identified by match to protein family HMM PF00593%3B match to protein family HMM PF07715%3B match to protein family HMM TIGR01783	gene	gene4273	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4275
AHA_4276	AHA_4276		AHA_4276	4732642	4734300	+	ABC transporter ATP-binding protein YojI	identified by match to protein family HMM PF00005%3B match to protein family HMM TIGR01194	gene	gene4274	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4276
AHA_4277	AHA_4277		AHA_4277	4734323	4735087	+	ferrichrome ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene4275	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4277
AHA_4278	AHA_4278		AHA_4278	4735106	4736032	+	ferrichrome-binding periplasmic protein	identified by match to protein family HMM PF01497	gene	gene4276	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4278
AHA_4279	AHA_4279		AHA_4279	4736029	4738011	+	ferrichrome ABC transporter%2C permease protein FhuB	identified by match to protein family HMM PF01032%3B match to protein family HMM PF02653	gene	gene4277	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4279
AHA_4280	AHA_4280	trmE	trmE	4738082	4739443	-	tRNA modification GTPase TrmE	identified by match to protein family HMM PF01926%3B match to protein family HMM TIGR00231%3B match to protein family HMM TIGR00450%3B match to protein family HMM TIGR00650	gene	gene4278	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4280
AHA_4281	AHA_4281		AHA_4281	4739553	4741199	-	membrane protein OxaA	identified by match to protein family HMM PF02096	gene	gene4279	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4281
AHA_4282	AHA_4282		AHA_4282	4741205	4741432	-	conserved hypothetical protein	identified by match to protein family HMM PF01809%3B match to protein family HMM TIGR00278	gene	gene4280	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4282
AHA_4283	AHA_4283	rnpA	rnpA	4741420	4741779	-	ribonuclease P protein component	identified by match to protein family HMM PF00825%3B match to protein family HMM TIGR00188	gene	gene4281	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4283
AHA_4284	AHA_4284	rpmH	rpmH	4741779	4741913	-	ribosomal protein L34	identified by match to protein family HMM PF00468%3B match to protein family HMM TIGR01030	gene	gene4282	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4284
AHA_4285	AHA_4285		AHA_4285	4742183	4742917	-	L-cystine ABC transporter%2C ATP-binding protein	identified by match to protein family HMM PF00005	gene	gene4283	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4285
AHA_4286	AHA_4286		AHA_4286	4742930	4743598	-	probable amino-acid ABC transporter permease protein YckJ	identified by match to protein family HMM PF00528%3B match to protein family HMM TIGR01726	gene	gene4284	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4286
AHA_4287	AHA_4287		AHA_4287	4743599	4744357	-	cystine-binding periplasmic protein	identified by match to protein family HMM PF00497	gene	gene4285	http://www.ncbi.nlm.nih.gov/gene/?term=AHA_4287