locus-tag class description HQ398_00005 PF00330 Aconitase family (aconitate hydratase) HQ398_00010 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_00040 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_00040 PF00205 Thiamine pyrophosphate enzyme, central domain HQ398_00040 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ398_00045 PF10369 Small subunit of acetolactate synthase HQ398_00050 PF01810 LysE type translocator HQ398_00060 PF01546 Peptidase family M20/M25/M40 HQ398_00090 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ398_00105 PF01609 Transposase DDE domain HQ398_00150 PF04002 RadC-like JAB domain HQ398_00180 PF01609 Transposase DDE domain HQ398_00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_00185 PF00512 His Kinase A (phospho-acceptor) domain HQ398_00185 PF00989 PAS fold HQ398_00185 PF16736 Single Cache-like HQ398_00190 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ398_00190 PF00072 Response regulator receiver domain HQ398_00190 PF01627 Hpt domain HQ398_00190 PF00512 His Kinase A (phospho-acceptor) domain HQ398_00190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_00190 PF00672 HAMP domain HQ398_00195 PF00486 Transcriptional regulatory protein, C terminal HQ398_00195 PF00072 Response regulator receiver domain HQ398_00200 PF00990 Diguanylate cyclase, GGDEF domain HQ398_00200 PF00072 Response regulator receiver domain HQ398_00205 PF02954 Bacterial regulatory protein, Fis family HQ398_00210 PF01207 Dihydrouridine synthase (Dus) HQ398_00215 PF02321 Outer membrane efflux protein HQ398_00220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_00250 PF00072 Response regulator receiver domain HQ398_00255 PF00854 POT family HQ398_00260 PF00483 Nucleotidyl transferase HQ398_00270 PF07085 DRTGG domain HQ398_00270 PF01515 Phosphate acetyl/butaryl transferase HQ398_00275 PF00871 Acetokinase family HQ398_00280 PF04217 Protein of unknown function, DUF412 HQ398_00285 PF03887 YfbU domain HQ398_00290 PF00578 AhpC/TSA family HQ398_00300 PF00701 Dihydrodipicolinate synthetase family HQ398_00305 PF06804 NlpB/DapX lipoprotein HQ398_00310 PF01259 SAICAR synthetase HQ398_00320 PF03466 LysR substrate binding domain HQ398_00320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_00325 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ398_00345 PF00512 His Kinase A (phospho-acceptor) domain HQ398_00345 PF00072 Response regulator receiver domain HQ398_00345 PF00989 PAS fold HQ398_00345 PF01627 Hpt domain HQ398_00345 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ398_00345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_00350 PF13286 Phosphohydrolase-associated domain HQ398_00350 PF01966 HD domain HQ398_00360 PF00512 His Kinase A (phospho-acceptor) domain HQ398_00360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_00360 PF00072 Response regulator receiver domain HQ398_00360 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ398_00365 PF00990 Diguanylate cyclase, GGDEF domain HQ398_00365 PF03707 Bacterial signalling protein N terminal repeat HQ398_00365 PF00563 EAL domain HQ398_00370 PF00672 HAMP domain HQ398_00370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_00375 PF02357 Transcription termination factor nusG HQ398_00380 PF03180 NLPA lipoprotein HQ398_00385 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_00390 PF00005 ABC transporter HQ398_00390 PF09383 NIL domain HQ398_00400 PF00480 ROK family HQ398_00405 PF08331 Domain of unknown function (DUF1730) HQ398_00410 PF01256 Carbohydrate kinase HQ398_00410 PF03853 YjeF-related protein N-terminus HQ398_00415 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ398_00420 PF01520 N-acetylmuramoyl-L-alanine amidase HQ398_00425 PF01119 DNA mismatch repair protein, C-terminal domain HQ398_00425 PF08676 MutL C terminal dimerisation domain HQ398_00435 PF17209 Hfq protein HQ398_00440 PF16360 GTP-binding GTPase Middle Region HQ398_00440 PF13167 GTP-binding GTPase N-terminal HQ398_00440 PF01926 50S ribosome-binding GTPase HQ398_00445 PF01145 SPFH domain / Band 7 family HQ398_00445 PF12221 Bacterial membrane protein N terminal HQ398_00450 PF01145 SPFH domain / Band 7 family HQ398_00455 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ398_00460 PF00348 Polyprenyl synthetase HQ398_00465 PF00829 Ribosomal prokaryotic L21 protein HQ398_00470 PF01016 Ribosomal L27 protein HQ398_00475 PF01018 GTP1/OBG HQ398_00475 PF01926 50S ribosome-binding GTPase HQ398_00480 PF07670 Nucleoside recognition HQ398_00485 PF00296 Luciferase-like monooxygenase HQ398_00495 PF00149 Calcineurin-like phosphoesterase HQ398_00500 PF04379 ApaG domain HQ398_00505 PF00398 Ribosomal RNA adenine dimethylase HQ398_00510 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ398_00515 PF09312 SurA N-terminal domain HQ398_00515 PF00639 PPIC-type PPIASE domain HQ398_00520 PF04453 LPS transport system D HQ398_00520 PF03968 OstA-like protein HQ398_00525 PF01636 Phosphotransferase enzyme family HQ398_00530 PF00483 Nucleotidyl transferase HQ398_00535 PF00226 DnaJ domain HQ398_00535 PF05099 Tellurite resistance protein TerB HQ398_00540 PF07687 Peptidase dimerisation domain HQ398_00540 PF01546 Peptidase family M20/M25/M40 HQ398_00545 PF00156 Phosphoribosyl transferase domain HQ398_00550 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ398_00555 PF07417 Sigma factor-binding transcriptional regulator Crl HQ398_00560 PF00696 Amino acid kinase family HQ398_00560 PF01472 PUA domain HQ398_00565 PF00171 Aldehyde dehydrogenase family HQ398_00580 PF09905 DNA-binding protein VF530 HQ398_00585 PF02666 Phosphatidylserine decarboxylase HQ398_00590 PF03193 RsgA GTPase HQ398_00595 PF00929 Exonuclease HQ398_00635 PF00313 'Cold-shock' DNA-binding domain HQ398_00645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_00645 PF00672 HAMP domain HQ398_00650 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_00655 PF00860 Permease family HQ398_00665 PF12848 ABC transporter HQ398_00665 PF00005 ABC transporter HQ398_00670 PF00589 Phage integrase family HQ398_00670 PF12167 Arm DNA-binding domain HQ398_00680 PF00436 Single-strand binding protein family HQ398_00865 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_00865 PF00589 Phage integrase family HQ398_00915 PF03472 Autoinducer binding domain HQ398_00915 PF00196 Bacterial regulatory proteins, luxR family HQ398_00950 PF03354 Phage Terminase HQ398_01005 PF04984 Phage tail sheath protein subtilisin-like domain HQ398_01005 PF17482 Phage tail sheath C-terminal domain HQ398_01050 PF04865 Baseplate J-like protein HQ398_01055 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) HQ398_01090 PF01048 Phosphorylase superfamily HQ398_01095 PF01464 Transglycosylase SLT domain HQ398_01105 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) HQ398_01110 PF01370 NAD dependent epimerase/dehydratase family HQ398_01115 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ398_01115 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ398_01115 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ398_01130 PF00005 ABC transporter HQ398_01130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_01135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_01135 PF00005 ABC transporter HQ398_01140 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_01140 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_01145 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_01150 PF03734 L,D-transpeptidase catalytic domain HQ398_01150 PF17969 L,D-transpeptidase C-terminal domain HQ398_01160 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_01160 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_01165 PF00881 Nitroreductase family HQ398_01170 PF12464 Maltose acetyltransferase HQ398_01170 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_01175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_01175 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_01185 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_01185 PF00107 Zinc-binding dehydrogenase HQ398_01190 PF03466 LysR substrate binding domain HQ398_01190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_01195 PF00367 phosphotransferase system, EIIB HQ398_01195 PF02378 Phosphotransferase system, EIIC HQ398_01195 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_01200 PF00474 Sodium:solute symporter family HQ398_01205 PF06196 Protein of unknown function (DUF997) HQ398_01210 PF02785 Biotin carboxylase C-terminal domain HQ398_01210 PF00289 Biotin carboxylase, N-terminal domain HQ398_01210 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ398_01215 PF00364 Biotin-requiring enzyme HQ398_01220 PF01220 Dehydroquinase class II HQ398_01225 PF00501 AMP-binding enzyme HQ398_01225 PF13193 AMP-binding enzyme C-terminal domain HQ398_01225 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ398_01240 PF01609 Transposase DDE domain HQ398_01255 PF02613 Nitrate reductase delta subunit HQ398_01270 PF00464 Serine hydroxymethyltransferase HQ398_01280 PF03477 ATP cone domain HQ398_01285 PF01872 RibD C-terminal domain HQ398_01285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_01290 PF00677 Lumazine binding domain HQ398_01295 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ398_01295 PF00925 GTP cyclohydrolase II HQ398_01300 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ398_01305 PF01029 NusB family HQ398_01310 PF02769 AIR synthase related protein, C-terminal domain HQ398_01310 PF00586 AIR synthase related protein, N-terminal domain HQ398_01315 PF04608 Phosphatidylglycerophosphatase A HQ398_01320 PF00005 ABC transporter HQ398_01320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_01325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_01330 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_01335 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_01335 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_01340 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ398_01340 PF02779 Transketolase, pyrimidine binding domain HQ398_01340 PF02780 Transketolase, C-terminal domain HQ398_01345 PF00348 Polyprenyl synthetase HQ398_01350 PF02609 Exonuclease VII small subunit HQ398_01355 PF01618 MotA/TolQ/ExbB proton channel family HQ398_01360 PF00691 OmpA family HQ398_01360 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_01360 PF00691 OmpA family HQ398_01360 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_01365 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_01365 PF03449 Transcription elongation factor, N-terminal HQ398_01375 PF01985 CRS1 / YhbY (CRM) domain HQ398_01380 PF01728 FtsJ-like methyltransferase HQ398_01385 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_01385 PF17862 AAA+ lid domain HQ398_01385 PF06480 FtsH Extracellular HQ398_01385 PF01434 Peptidase family M41 HQ398_01390 PF00809 Pterin binding enzyme HQ398_01395 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_01395 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_01395 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_01395 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_01400 PF00121 Triosephosphate isomerase HQ398_01405 PF03840 Preprotein translocase SecG subunit HQ398_01420 PF02576 RimP N-terminal domain HQ398_01420 PF17384 RimP C-terminal SH3 domain HQ398_01425 PF13184 NusA-like KH domain HQ398_01425 PF08529 NusA N-terminal domain HQ398_01425 PF00575 S1 RNA binding domain HQ398_01430 PF00009 Elongation factor Tu GTP binding domain HQ398_01430 PF11987 Translation-initiation factor 2 HQ398_01430 PF08364 Bacterial translation initiation factor IF-2 associated region HQ398_01430 PF04760 Translation initiation factor IF-2, N-terminal region HQ398_01435 PF02033 Ribosome-binding factor A HQ398_01440 PF09157 Pseudouridine synthase II TruB, C-terminal HQ398_01440 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ398_01440 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ398_01445 PF00312 Ribosomal protein S15 HQ398_01450 PF00575 S1 RNA binding domain HQ398_01450 PF03725 3' exoribonuclease family, domain 2 HQ398_01450 PF01138 3' exoribonuclease family, domain 1 HQ398_01450 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ398_01450 PF00013 KH domain HQ398_01455 PF01339 CheB methylesterase HQ398_01455 PF00072 Response regulator receiver domain HQ398_01460 PF03975 CheD chemotactic sensory transduction HQ398_01465 PF01739 CheR methyltransferase, SAM binding domain HQ398_01465 PF03705 CheR methyltransferase, all-alpha domain HQ398_01480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_01480 PF12729 Four helix bundle sensory module for signal transduction HQ398_01480 PF00672 HAMP domain HQ398_01485 PF07194 P2 response regulator binding domain HQ398_01485 PF01627 Hpt domain HQ398_01485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_01485 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_01485 PF01584 CheW-like domain HQ398_01495 PF00072 Response regulator receiver domain HQ398_01500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_01500 PF00672 HAMP domain HQ398_01500 PF02743 Cache domain HQ398_01505 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_01505 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_01510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_01510 PF03466 LysR substrate binding domain HQ398_01520 PF12392 Collagenase HQ398_01520 PF01136 Peptidase family U32 HQ398_01525 PF01609 Transposase DDE domain HQ398_01530 PF02872 5'-nucleotidase, C-terminal domain HQ398_01530 PF00149 Calcineurin-like phosphoesterase HQ398_01550 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ398_01575 PF00106 short chain dehydrogenase HQ398_01580 PF03573 outer membrane porin, OprD family HQ398_01585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_01615 PF13784 Fic/DOC family N-terminal HQ398_01615 PF02661 Fic/DOC family HQ398_01620 PF11798 IMS family HHH motif HQ398_01620 PF11799 impB/mucB/samB family C-terminal domain HQ398_01620 PF00817 impB/mucB/samB family HQ398_01620 PF13438 Domain of unknown function (DUF4113) HQ398_01625 PF00717 Peptidase S24-like HQ398_01640 PF02384 N-6 DNA Methylase HQ398_01640 PF12161 HsdM N-terminal domain HQ398_01660 PF13087 AAA domain HQ398_01660 PF13086 AAA domain HQ398_01660 PF13195 Protein of unknown function (DUF4011) HQ398_01660 PF13195 Protein of unknown function (DUF4011) HQ398_01660 PF13087 AAA domain HQ398_01660 PF13086 AAA domain HQ398_01665 PF18766 SWI2/SNF2 ATPase HQ398_01665 PF11867 Domain of unknown function (DUF3387) HQ398_01665 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) HQ398_01675 PF04002 RadC-like JAB domain HQ398_01720 PF09588 YqaJ-like viral recombinase domain HQ398_01750 PF01817 Chorismate mutase type II HQ398_01750 PF00800 Prephenate dehydratase HQ398_01765 PF06508 Queuosine biosynthesis protein QueC HQ398_01780 PF08349 Protein of unknown function (DUF1722) HQ398_01785 PF13411 MerR HTH family regulatory protein HQ398_01790 PF03441 FAD binding domain of DNA photolyase HQ398_01790 PF00875 DNA photolyase HQ398_01800 PF00106 short chain dehydrogenase HQ398_01845 PF02424 ApbE family HQ398_01850 PF00175 Oxidoreductase NAD-binding domain HQ398_01850 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_01850 PF00970 Oxidoreductase FAD-binding domain HQ398_01855 PF02508 Rnf-Nqr subunit, membrane protein HQ398_01860 PF02508 Rnf-Nqr subunit, membrane protein HQ398_01865 PF04205 FMN-binding domain HQ398_01870 PF03116 NQR2, RnfD, RnfE family HQ398_01875 PF11973 NQRA C-terminal domain HQ398_01875 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ398_01880 PF01722 BolA-like protein HQ398_01885 PF05175 Methyltransferase small domain HQ398_01895 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ398_01900 PF07690 Major Facilitator Superfamily HQ398_01905 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ398_01910 PF04461 Protein of unknown function (DUF520) HQ398_01915 PF02558 Ketopantoate reductase PanE/ApbA HQ398_01915 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ398_01920 PF01965 DJ-1/PfpI family HQ398_01930 PF00817 impB/mucB/samB family HQ398_01930 PF11798 IMS family HHH motif HQ398_01930 PF11799 impB/mucB/samB family C-terminal domain HQ398_01935 PF00672 HAMP domain HQ398_01935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_01940 PF03466 LysR substrate binding domain HQ398_01940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_01950 PF04241 Protein of unknown function (DUF423) HQ398_01955 PF18125 RlmM ferredoxin-like domain HQ398_01955 PF01728 FtsJ-like methyltransferase HQ398_01965 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_01965 PF18324 Hypothetical protein TT1725 HQ398_01970 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ398_01970 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ398_01975 PF03641 Possible lysine decarboxylase HQ398_01975 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ398_01975 PF11892 Domain of unknown function (DUF3412) HQ398_01980 PF00990 Diguanylate cyclase, GGDEF domain HQ398_01990 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ398_01990 PF14489 QueF-like protein HQ398_01995 PF07348 Syd protein (SUKH-2) HQ398_02000 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ398_02025 PF04287 tRNA pseudouridine synthase C HQ398_02030 PF00849 RNA pseudouridylate synthase HQ398_02045 PF01609 Transposase DDE domain HQ398_02050 PF02264 LamB porin HQ398_02055 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ398_02060 PF00367 phosphotransferase system, EIIB HQ398_02060 PF02378 Phosphotransferase system, EIIC HQ398_02065 PF11944 Protein of unknown function (DUF3461) HQ398_02070 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_02070 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_02070 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ398_02080 PF00557 Metallopeptidase family M24 HQ398_02085 PF00318 Ribosomal protein S2 HQ398_02090 PF00889 Elongation factor TS HQ398_02095 PF00696 Amino acid kinase family HQ398_02100 PF01765 Ribosome recycling factor HQ398_02105 PF01255 Putative undecaprenyl diphosphate synthase HQ398_02115 PF13288 DXP reductoisomerase C-terminal domain HQ398_02115 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ398_02115 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ398_02120 PF02163 Peptidase family M50 HQ398_02120 PF17820 PDZ domain HQ398_02125 PF01103 Surface antigen HQ398_02125 PF07244 Surface antigen variable number repeat HQ398_02130 PF03938 Outer membrane protein (OmpH-like) HQ398_02135 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_02135 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ398_02140 PF07977 FabA-like domain HQ398_02145 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ398_02145 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_02150 PF02684 Lipid-A-disaccharide synthetase HQ398_02155 PF01351 Ribonuclease HII HQ398_02160 PF01336 OB-fold nucleic acid binding domain HQ398_02160 PF02811 PHP domain HQ398_02160 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ398_02160 PF14579 Helix-hairpin-helix motif HQ398_02160 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ398_02165 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ398_02175 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ398_02180 PF01235 Sodium:alanine symporter family HQ398_02185 PF11992 Domain of unknown function (DUF3488) HQ398_02185 PF13559 Domain of unknown function (DUF4129) HQ398_02185 PF01841 Transglutaminase-like superfamily HQ398_02200 PF00144 Beta-lactamase HQ398_02205 PF07690 Major Facilitator Superfamily HQ398_02210 PF03466 LysR substrate binding domain HQ398_02210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02220 PF03466 LysR substrate binding domain HQ398_02230 PF03652 Holliday junction resolvase HQ398_02235 PF02622 Uncharacterized ACR, COG1678 HQ398_02240 PF12729 Four helix bundle sensory module for signal transduction HQ398_02240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_02240 PF00672 HAMP domain HQ398_02245 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ398_02245 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ398_02250 PF04452 RNA methyltransferase HQ398_02255 PF04231 Endonuclease I HQ398_02260 PF10263 SprT-like family HQ398_02260 PF17283 SprT-like zinc ribbon domain HQ398_02265 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ398_02265 PF02772 S-adenosylmethionine synthetase, central domain HQ398_02265 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ398_02270 PF02779 Transketolase, pyrimidine binding domain HQ398_02270 PF02780 Transketolase, C-terminal domain HQ398_02270 PF00456 Transketolase, thiamine diphosphate binding domain HQ398_02280 PF01042 Endoribonuclease L-PSP HQ398_02285 PF01609 Transposase DDE domain HQ398_02300 PF03702 Anhydro-N-acetylmuramic acid kinase HQ398_02305 PF08525 Opacity-associated protein A N-terminal motif HQ398_02305 PF01551 Peptidase family M23 HQ398_02305 PF01476 LysM domain HQ398_02310 PF00579 tRNA synthetases class I (W and Y) HQ398_02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02315 PF03466 LysR substrate binding domain HQ398_02320 PF03306 Alpha-acetolactate decarboxylase HQ398_02335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02335 PF03466 LysR substrate binding domain HQ398_02350 PF12706 Beta-lactamase superfamily domain HQ398_02355 PF03466 LysR substrate binding domain HQ398_02355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02365 PF13302 Acetyltransferase (GNAT) domain HQ398_02370 PF00005 ABC transporter HQ398_02370 PF16326 ABC transporter C-terminal domain HQ398_02370 PF12848 ABC transporter HQ398_02375 PF18500 CadC C-terminal domain 1 HQ398_02375 PF00486 Transcriptional regulatory protein, C terminal HQ398_02380 PF13520 Amino acid permease HQ398_02385 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ398_02385 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ398_02385 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ398_02390 PF08543 Phosphomethylpyrimidine kinase HQ398_02400 PF01431 Peptidase family M13 HQ398_02400 PF05649 Peptidase family M13 HQ398_02405 PF01171 PP-loop family HQ398_02405 PF09179 TilS substrate binding domain HQ398_02405 PF11734 TilS substrate C-terminal domain HQ398_02410 PF00990 Diguanylate cyclase, GGDEF domain HQ398_02415 PF00999 Sodium/hydrogen exchanger family HQ398_02415 PF02080 TrkA-C domain HQ398_02415 PF02254 TrkA-N domain HQ398_02435 PF00196 Bacterial regulatory proteins, luxR family HQ398_02435 PF00072 Response regulator receiver domain HQ398_02445 PF00128 Alpha amylase, catalytic domain HQ398_02460 PF00535 Glycosyl transferase family 2 HQ398_02475 PF03734 L,D-transpeptidase catalytic domain HQ398_02475 PF01471 Putative peptidoglycan binding domain HQ398_02480 PF05951 Bacterial protein of unknown function (DUF882) HQ398_02490 PF03458 UPF0126 domain HQ398_02500 PF06470 SMC proteins Flexible Hinge Domain HQ398_02500 PF02463 RecF/RecN/SMC N terminal domain HQ398_02505 PF04354 ZipA, C-terminal FtsZ-binding domain HQ398_02510 PF00533 BRCA1 C Terminus (BRCT) domain HQ398_02510 PF01653 NAD-dependent DNA ligase adenylation domain HQ398_02510 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ398_02510 PF12826 Helix-hairpin-helix motif HQ398_02510 PF03120 NAD-dependent DNA ligase OB-fold domain HQ398_02520 PF03477 ATP cone domain HQ398_02520 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ398_02550 PF00529 HlyD membrane-fusion protein of T1SS HQ398_02550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_02555 PF01047 MarR family HQ398_02570 PF00390 Malic enzyme, N-terminal domain HQ398_02570 PF03949 Malic enzyme, NAD binding domain HQ398_02575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_02575 PF17203 Single cache domain 3 HQ398_02575 PF00989 PAS fold HQ398_02575 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ398_02580 PF12431 Transcriptional regulator HQ398_02580 PF00072 Response regulator receiver domain HQ398_02585 PF00892 EamA-like transporter family HQ398_02595 PF00990 Diguanylate cyclase, GGDEF domain HQ398_02595 PF17158 Membrane-associated sensor, integral membrane domain HQ398_02600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_02605 PF00486 Transcriptional regulatory protein, C terminal HQ398_02605 PF00072 Response regulator receiver domain HQ398_02610 PF11808 Phosphate regulon sensor protein PhoR HQ398_02610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_02610 PF00512 His Kinase A (phospho-acceptor) domain HQ398_02610 PF00989 PAS fold HQ398_02615 PF12849 PBP superfamily domain HQ398_02620 PF01435 Peptidase family M48 HQ398_02630 PF00480 ROK family HQ398_02635 PF03932 CutC family HQ398_02640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_02640 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_02655 PF00293 NUDIX domain HQ398_02665 PF00462 Glutaredoxin HQ398_02665 PF08534 Redoxin HQ398_02670 PF01699 Sodium/calcium exchanger protein HQ398_02675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_02675 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ398_02680 PF01235 Sodium:alanine symporter family HQ398_02690 PF00990 Diguanylate cyclase, GGDEF domain HQ398_02695 PF10692 Protein of unknown function (DUF2498) HQ398_02700 PF01554 MatE HQ398_02705 PF12833 Helix-turn-helix domain HQ398_02710 PF00390 Malic enzyme, N-terminal domain HQ398_02710 PF03949 Malic enzyme, NAD binding domain HQ398_02720 PF00691 OmpA family HQ398_02720 PF01389 OmpA-like transmembrane domain HQ398_02725 PF00691 OmpA family HQ398_02725 PF01389 OmpA-like transmembrane domain HQ398_02740 PF00209 Sodium:neurotransmitter symporter family HQ398_02745 PF01734 Patatin-like phospholipase HQ398_02750 PF17158 Membrane-associated sensor, integral membrane domain HQ398_02750 PF00990 Diguanylate cyclase, GGDEF domain HQ398_02755 PF00529 HlyD membrane-fusion protein of T1SS HQ398_02755 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_02765 PF11842 Domain of unknown function (DUF3362) HQ398_02765 PF04055 Radical SAM superfamily HQ398_02765 PF08497 Radical SAM N-terminal HQ398_02780 PF04389 Peptidase family M28 HQ398_02780 PF04151 Bacterial pre-peptidase C-terminal domain HQ398_02800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_02800 PF03466 LysR substrate binding domain HQ398_02810 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ398_02815 PF04358 DsrC like protein HQ398_02820 PF12805 FUSC-like inner membrane protein yccS HQ398_02825 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ398_02835 PF04794 YdjC-like protein HQ398_02840 PF02056 Family 4 glycosyl hydrolase HQ398_02840 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ398_02845 PF07883 Cupin domain HQ398_02845 PF12833 Helix-turn-helix domain HQ398_02850 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit HQ398_02855 PF00232 Glycosyl hydrolase family 1 HQ398_02860 PF02378 Phosphotransferase system, EIIC HQ398_02865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_02870 PF01203 Type II secretion system (T2SS), protein N HQ398_02875 PF04612 Type II secretion system (T2SS), protein M HQ398_02880 PF05134 Type II secretion system (T2SS), protein L HQ398_02880 PF12693 GspL periplasmic domain HQ398_02885 PF03934 Type II secretion system (T2SS), protein K HQ398_02890 PF11612 Type II secretion system (T2SS), protein J HQ398_02890 PF07963 Prokaryotic N-terminal methylation motif HQ398_02895 PF07963 Prokaryotic N-terminal methylation motif HQ398_02895 PF02501 Type II secretion system (T2SS), protein I HQ398_02900 PF12019 Type II transport protein GspH HQ398_02900 PF07963 Prokaryotic N-terminal methylation motif HQ398_02905 PF07963 Prokaryotic N-terminal methylation motif HQ398_02905 PF08334 Type II secretion system (T2SS), protein G HQ398_02910 PF00482 Type II secretion system (T2SS), protein F HQ398_02915 PF00437 Type II/IV secretion system protein HQ398_02920 PF00263 Bacterial type II and III secretion system protein HQ398_02920 PF03958 Bacterial type II/III secretion system short domain HQ398_02925 PF11356 Type II secretion system protein C HQ398_02930 PF16537 Type II secretion system protein B HQ398_02935 PF13401 AAA domain HQ398_02935 PF01471 Putative peptidoglycan binding domain HQ398_02940 PF00672 HAMP domain HQ398_02940 PF01966 HD domain HQ398_02945 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_02945 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_02955 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_02955 PF01434 Peptidase family M41 HQ398_02955 PF17862 AAA+ lid domain HQ398_02960 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_02965 PF00381 PTS HPr component phosphorylation site HQ398_02970 PF05524 PEP-utilising enzyme, N-terminal HQ398_02970 PF00391 PEP-utilising enzyme, mobile domain HQ398_02970 PF02896 PEP-utilising enzyme, TIM barrel domain HQ398_02975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_02980 PF08448 PAS fold HQ398_02980 PF00990 Diguanylate cyclase, GGDEF domain HQ398_02985 PF00924 Mechanosensitive ion channel HQ398_02985 PF12795 Mechanosensitive ion channel porin domain HQ398_02985 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ398_02990 PF00224 Pyruvate kinase, barrel domain HQ398_02990 PF02887 Pyruvate kinase, alpha/beta domain HQ398_03000 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ398_03005 PF13476 AAA domain HQ398_03010 PF12320 Type 5 capsule protein repressor C-terminal domain HQ398_03010 PF00149 Calcineurin-like phosphoesterase HQ398_03020 PF04381 Putative exonuclease, RdgC HQ398_03025 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_03025 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_03030 PF02690 Na+/Pi-cotransporter HQ398_03040 PF00324 Amino acid permease HQ398_03050 PF00324 Amino acid permease HQ398_03055 PF00202 Aminotransferase class-III HQ398_03060 PF00171 Aldehyde dehydrogenase family HQ398_03065 PF07883 Cupin domain HQ398_03065 PF01381 Helix-turn-helix HQ398_03070 PF01266 FAD dependent oxidoreductase HQ398_03095 PF05656 Protein of unknown function (DUF805) HQ398_03100 PF01609 Transposase DDE domain HQ398_03115 PF00486 Transcriptional regulatory protein, C terminal HQ398_03115 PF00072 Response regulator receiver domain HQ398_03150 PF00664 ABC transporter transmembrane region HQ398_03150 PF00005 ABC transporter HQ398_03155 PF00005 ABC transporter HQ398_03155 PF00664 ABC transporter transmembrane region HQ398_03170 PF00072 Response regulator receiver domain HQ398_03170 PF00486 Transcriptional regulatory protein, C terminal HQ398_03180 PF03737 Aldolase/RraA HQ398_03195 PF01022 Bacterial regulatory protein, arsR family HQ398_03200 PF01758 Sodium Bile acid symporter family HQ398_03205 PF03960 ArsC family HQ398_03210 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_03210 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_03210 PF07670 Nucleoside recognition HQ398_03215 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ398_03220 PF01609 Transposase DDE domain HQ398_03225 PF01609 Transposase DDE domain HQ398_03235 PF00290 Tryptophan synthase alpha chain HQ398_03240 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_03245 PF00218 Indole-3-glycerol phosphate synthase HQ398_03245 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ398_03250 PF00591 Glycosyl transferase family, a/b domain HQ398_03250 PF02885 Glycosyl transferase family, helical bundle domain HQ398_03255 PF00117 Glutamine amidotransferase class-I HQ398_03255 PF02885 Glycosyl transferase family, helical bundle domain HQ398_03255 PF00591 Glycosyl transferase family, a/b domain HQ398_03260 PF04715 Anthranilate synthase component I, N terminal region HQ398_03260 PF00425 chorismate binding enzyme HQ398_03265 PF02811 PHP domain HQ398_03270 PF01300 Telomere recombination HQ398_03275 PF02616 Segregation and condensation protein ScpA HQ398_03280 PF04079 Segregation and condensation complex subunit ScpB HQ398_03285 PF00849 RNA pseudouridylate synthase HQ398_03285 PF01479 S4 domain HQ398_03290 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB HQ398_03290 PF17287 POTRA domain HQ398_03290 PF08479 POTRA domain, ShlB-type HQ398_03295 PF15526 Novel toxin 21 HQ398_03295 PF13332 Hemagglutinin repeat HQ398_03295 PF04829 Pre-toxin domain with VENN motif HQ398_03295 PF05594 Haemagluttinin repeat HQ398_03295 PF05860 haemagglutination activity domain HQ398_03320 PF02641 Uncharacterized ACR, COG1993 HQ398_03340 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ398_03345 PF00588 SpoU rRNA Methylase family HQ398_03350 PF01842 ACT domain HQ398_03350 PF03447 Homoserine dehydrogenase, NAD binding domain HQ398_03350 PF00696 Amino acid kinase family HQ398_03350 PF00742 Homoserine dehydrogenase HQ398_03350 PF13840 ACT domain HQ398_03360 PF14821 Threonine synthase N terminus HQ398_03360 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_03380 PF01048 Phosphorylase superfamily HQ398_03405 PF04055 Radical SAM superfamily HQ398_03405 PF00919 Uncharacterized protein family UPF0004 HQ398_03405 PF18693 TRAM domain HQ398_03410 PF00072 Response regulator receiver domain HQ398_03430 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ398_03430 PF00440 Bacterial regulatory proteins, tetR family HQ398_03435 PF00529 HlyD membrane-fusion protein of T1SS HQ398_03435 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_03445 PF16363 GDP-mannose 4,6 dehydratase HQ398_03450 PF00483 Nucleotidyl transferase HQ398_03455 PF05523 WxcM-like, C-terminal HQ398_03460 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_03465 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_03470 PF01531 Glycosyl transferase family 11 HQ398_03475 PF00535 Glycosyl transferase family 2 HQ398_03490 PF01757 Acyltransferase family HQ398_03495 PF03414 Glycosyltransferase family 6 HQ398_03505 PF16363 GDP-mannose 4,6 dehydratase HQ398_03510 PF01370 NAD dependent epimerase/dehydratase family HQ398_03515 PF00293 NUDIX domain HQ398_03520 PF00483 Nucleotidyl transferase HQ398_03520 PF01050 Mannose-6-phosphate isomerase HQ398_03525 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_03525 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_03525 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_03525 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_03530 PF00535 Glycosyl transferase family 2 HQ398_03535 PF02397 Bacterial sugar transferase HQ398_03540 PF04321 RmlD substrate binding domain HQ398_03545 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ398_03555 PF00816 H-NS histone family HQ398_03560 PF01609 Transposase DDE domain HQ398_03565 PF02321 Outer membrane efflux protein HQ398_03570 PF12704 MacB-like periplasmic core domain HQ398_03570 PF00005 ABC transporter HQ398_03570 PF02687 FtsX-like permease family HQ398_03575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_03580 PF01368 DHH family HQ398_03580 PF02833 DHHA2 domain HQ398_03585 PF02463 RecF/RecN/SMC N terminal domain HQ398_03590 PF02056 Family 4 glycosyl hydrolase HQ398_03590 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ398_03595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_03595 PF03466 LysR substrate binding domain HQ398_03600 PF01513 ATP-NAD kinase HQ398_03605 PF01025 GrpE HQ398_03610 PF00012 Hsp70 protein HQ398_03615 PF00226 DnaJ domain HQ398_03615 PF00684 DnaJ central domain HQ398_03615 PF01556 DnaJ C terminal domain HQ398_03640 PF04143 Sulphur transport HQ398_03655 PF00873 AcrB/AcrD/AcrF family HQ398_03660 PF00563 EAL domain HQ398_03660 PF00990 Diguanylate cyclase, GGDEF domain HQ398_03660 PF13426 PAS domain HQ398_03665 PF03099 Biotin/lipoate A/B protein ligase family HQ398_03665 PF10437 Bacterial lipoate protein ligase C-terminus HQ398_03675 PF13460 NAD(P)H-binding HQ398_03680 PF04355 SmpA / OmlA family HQ398_03685 PF00465 Iron-containing alcohol dehydrogenase HQ398_03690 PF01048 Phosphorylase superfamily HQ398_03695 PF00849 RNA pseudouridylate synthase HQ398_03700 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_03715 PF07509 Protein of unknown function (DUF1523) HQ398_03725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_03725 PF00672 HAMP domain HQ398_03725 PF12729 Four helix bundle sensory module for signal transduction HQ398_03730 PF01810 LysE type translocator HQ398_03735 PF03471 Transporter associated domain HQ398_03735 PF00999 Sodium/hydrogen exchanger family HQ398_03735 PF02080 TrkA-C domain HQ398_03745 PF02080 TrkA-C domain HQ398_03745 PF03471 Transporter associated domain HQ398_03745 PF00999 Sodium/hydrogen exchanger family HQ398_03755 PF02557 D-alanyl-D-alanine carboxypeptidase HQ398_03760 PF01546 Peptidase family M20/M25/M40 HQ398_03760 PF07687 Peptidase dimerisation domain HQ398_03765 PF03960 ArsC family HQ398_03775 PF01609 Transposase DDE domain HQ398_03780 PF03606 C4-dicarboxylate anaerobic carrier HQ398_03785 PF01546 Peptidase family M20/M25/M40 HQ398_03785 PF07687 Peptidase dimerisation domain HQ398_03795 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ398_03805 PF00152 tRNA synthetases class II (D, K and N) HQ398_03805 PF01336 OB-fold nucleic acid binding domain HQ398_03820 PF00202 Aminotransferase class-III HQ398_03825 PF04055 Radical SAM superfamily HQ398_03825 PF06968 Biotin and Thiamin Synthesis associated domain HQ398_03830 PF00155 Aminotransferase class I and II HQ398_03835 PF08241 Methyltransferase domain HQ398_03835 PF12697 Alpha/beta hydrolase family HQ398_03845 PF01435 Peptidase family M48 HQ398_03850 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_03850 PF03476 MOSC N-terminal beta barrel domain HQ398_03850 PF03473 MOSC domain HQ398_03850 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_03850 PF03473 MOSC domain HQ398_03850 PF03476 MOSC N-terminal beta barrel domain HQ398_03855 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_03855 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ398_03855 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_03860 PF10371 Domain of unknown function HQ398_03860 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ398_03860 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ398_03860 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ398_03860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_03870 PF01370 NAD dependent epimerase/dehydratase family HQ398_03875 PF03061 Thioesterase superfamily HQ398_03885 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_03890 PF00462 Glutaredoxin HQ398_03895 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ398_03900 PF00271 Helicase conserved C-terminal domain HQ398_03900 PF04851 Type III restriction enzyme, res subunit HQ398_03905 PF00529 HlyD membrane-fusion protein of T1SS HQ398_03905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_03910 PF11742 Protein of unknown function (DUF3302) HQ398_03915 PF02554 Carbon starvation protein CstA HQ398_03920 PF00072 Response regulator receiver domain HQ398_03920 PF04397 LytTr DNA-binding domain HQ398_03930 PF01966 HD domain HQ398_03935 PF00884 Sulfatase HQ398_03935 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_03940 PF00480 ROK family HQ398_03940 PF01047 MarR family HQ398_03945 PF01979 Amidohydrolase family HQ398_03950 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ398_03955 PF00367 phosphotransferase system, EIIB HQ398_03955 PF02378 Phosphotransferase system, EIIC HQ398_03955 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ398_03960 PF02838 Glycosyl hydrolase family 20, domain 2 HQ398_03960 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ398_03960 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ398_03960 PF03173 Putative carbohydrate binding domain HQ398_03965 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ398_03965 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_03970 PF01475 Ferric uptake regulator family HQ398_03980 PF00258 Flavodoxin HQ398_03985 PF01402 Ribbon-helix-helix protein, copG family HQ398_04000 PF17206 SeqA protein N-terminal domain HQ398_04000 PF03925 SeqA protein C-terminal domain HQ398_04005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ398_04005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ398_04005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ398_04005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ398_04010 PF13406 Transglycosylase SLT domain HQ398_04015 PF01066 CDP-alcohol phosphatidyltransferase HQ398_04020 PF00005 ABC transporter HQ398_04030 PF13416 Bacterial extracellular solute-binding protein HQ398_04035 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_04035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_04035 PF00403 Heavy-metal-associated domain HQ398_04040 PF02627 Carboxymuconolactone decarboxylase family HQ398_04060 PF01103 Surface antigen HQ398_04060 PF17243 POTRA domain TamA domain 1 HQ398_04060 PF07244 Surface antigen variable number repeat HQ398_04085 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ398_04095 PF01464 Transglycosylase SLT domain HQ398_04095 PF14718 Soluble lytic murein transglycosylase L domain HQ398_04100 PF00356 Bacterial regulatory proteins, lacI family HQ398_04105 PF00793 DAHP synthetase I family HQ398_04110 PF07715 TonB-dependent Receptor Plug Domain HQ398_04110 PF00593 TonB dependent receptor HQ398_04115 PF00425 chorismate binding enzyme HQ398_04120 PF00501 AMP-binding enzyme HQ398_04120 PF13193 AMP-binding enzyme C-terminal domain HQ398_04125 PF00550 Phosphopantetheine attachment site HQ398_04125 PF00857 Isochorismatase family HQ398_04145 PF00676 Dehydrogenase E1 component HQ398_04150 PF02780 Transketolase, C-terminal domain HQ398_04150 PF02779 Transketolase, pyrimidine binding domain HQ398_04155 PF02817 e3 binding domain HQ398_04155 PF00364 Biotin-requiring enzyme HQ398_04155 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_04160 PF00313 'Cold-shock' DNA-binding domain HQ398_04190 PF00892 EamA-like transporter family HQ398_04195 PF00455 DeoR C terminal sensor domain HQ398_04195 PF08220 DeoR-like helix-turn-helix domain HQ398_04200 PF02901 Pyruvate formate lyase-like HQ398_04200 PF01228 Glycine radical HQ398_04205 PF04055 Radical SAM superfamily HQ398_04210 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ398_04220 PF11871 Domain of unknown function (DUF3391) HQ398_04220 PF01966 HD domain HQ398_04225 PF01479 S4 domain HQ398_04225 PF00849 RNA pseudouridylate synthase HQ398_04235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_04240 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ398_04255 PF13144 Chaperone for flagella basal body P-ring formation HQ398_04260 PF00072 Response regulator receiver domain HQ398_04260 PF01584 CheW-like domain HQ398_04265 PF01739 CheR methyltransferase, SAM binding domain HQ398_04265 PF03705 CheR methyltransferase, all-alpha domain HQ398_04270 PF00460 Flagella basal body rod protein HQ398_04275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_04275 PF00460 Flagella basal body rod protein HQ398_04280 PF13860 FlgD Ig-like domain HQ398_04280 PF03963 Flagellar hook capping protein - N-terminal region HQ398_04280 PF13861 FlgD Tudor-like domain HQ398_04285 PF07559 Flagellar basal body protein FlaE HQ398_04285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_04285 PF00460 Flagella basal body rod protein HQ398_04290 PF00460 Flagella basal body rod protein HQ398_04290 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_04295 PF00460 Flagella basal body rod protein HQ398_04295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_04300 PF02107 Flagellar L-ring protein HQ398_04305 PF02119 Flagellar P-ring protein HQ398_04310 PF10135 Rod binding protein HQ398_04310 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HQ398_04315 PF07196 Flagellin hook IN motif HQ398_04315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_04320 PF00669 Bacterial flagellin N-terminal helical region HQ398_04325 PF00571 CBS domain HQ398_04325 PF01769 Divalent cation transporter HQ398_04325 PF03448 MgtE intracellular N domain HQ398_04330 PF02541 Ppx/GppA phosphatase family HQ398_04335 PF02503 Polyphosphate kinase middle domain HQ398_04335 PF13090 Polyphosphate kinase C-terminal domain 2 HQ398_04335 PF17941 Polyphosphate kinase C-terminal domain 1 HQ398_04335 PF13089 Polyphosphate kinase N-terminal domain HQ398_04340 PF01842 ACT domain HQ398_04350 PF00158 Sigma-54 interaction domain HQ398_04350 PF02954 Bacterial regulatory protein, Fis family HQ398_04350 PF06490 Flagellar regulatory protein FleQ HQ398_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_04355 PF00512 His Kinase A (phospho-acceptor) domain HQ398_04355 PF13188 PAS domain HQ398_04365 PF01784 NIF3 (NGG1p interacting factor 3) HQ398_04370 PF00551 Formyl transferase HQ398_04375 PF00586 AIR synthase related protein, N-terminal domain HQ398_04375 PF02769 AIR synthase related protein, C-terminal domain HQ398_04390 PF00308 Bacterial dnaA protein HQ398_04395 PF00463 Isocitrate lyase family HQ398_04400 PF01274 Malate synthase HQ398_04420 PF14437 MafB19-like deaminase HQ398_04425 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_04430 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_04435 PF00005 ABC transporter HQ398_04440 PF01895 PhoU domain HQ398_04445 PF00571 CBS domain HQ398_04445 PF03471 Transporter associated domain HQ398_04445 PF01595 Cyclin M transmembrane N-terminal domain HQ398_04455 PF04116 Fatty acid hydroxylase superfamily HQ398_04465 PF00005 ABC transporter HQ398_04470 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_04475 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_04480 PF00990 Diguanylate cyclase, GGDEF domain HQ398_04485 PF07690 Major Facilitator Superfamily HQ398_04490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_04490 PF07730 Histidine kinase HQ398_04490 PF05231 MASE1 HQ398_04495 PF00196 Bacterial regulatory proteins, luxR family HQ398_04495 PF00072 Response regulator receiver domain HQ398_04500 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_04500 PF14760 Rnk N-terminus HQ398_04515 PF00245 Alkaline phosphatase HQ398_04520 PF00245 Alkaline phosphatase HQ398_04525 PF01926 50S ribosome-binding GTPase HQ398_04530 PF07690 Major Facilitator Superfamily HQ398_04535 PF00850 Histone deacetylase domain HQ398_04545 PF06733 DEAD_2 HQ398_04545 PF13307 Helicase C-terminal domain HQ398_04555 PF01817 Chorismate mutase type II HQ398_04555 PF02153 Prephenate dehydrogenase HQ398_04560 PF00793 DAHP synthetase I family HQ398_04565 PF00483 Nucleotidyl transferase HQ398_04570 PF07549 SecD/SecF GG Motif HQ398_04570 PF02355 Protein export membrane protein HQ398_04575 PF07549 SecD/SecF GG Motif HQ398_04575 PF13721 SecD export protein N-terminal TM region HQ398_04575 PF02355 Protein export membrane protein HQ398_04610 PF01230 HIT domain HQ398_04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_04615 PF00672 HAMP domain HQ398_04625 PF01979 Amidohydrolase family HQ398_04640 PF00375 Sodium:dicarboxylate symporter family HQ398_04655 PF01432 Peptidase family M3 HQ398_04655 PF08439 Oligopeptidase F HQ398_04660 PF00860 Permease family HQ398_04665 PF05728 Uncharacterised protein family (UPF0227) HQ398_04670 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_04680 PF04055 Radical SAM superfamily HQ398_04685 PF00563 EAL domain HQ398_04685 PF03707 Bacterial signalling protein N terminal repeat HQ398_04685 PF00990 Diguanylate cyclase, GGDEF domain HQ398_04690 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_04690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_04705 PF00912 Transglycosylase HQ398_04705 PF06832 Penicillin-Binding Protein C-terminus Family HQ398_04705 PF00905 Penicillin binding protein transpeptidase domain HQ398_04715 PF02568 Thiamine biosynthesis protein (ThiI) HQ398_04715 PF02926 THUMP domain HQ398_04725 PF03458 UPF0126 domain HQ398_04730 PF00669 Bacterial flagellin N-terminal helical region HQ398_04730 PF00700 Bacterial flagellin C-terminal helical region HQ398_04735 PF07196 Flagellin hook IN motif HQ398_04735 PF00669 Bacterial flagellin N-terminal helical region HQ398_04735 PF00700 Bacterial flagellin C-terminal helical region HQ398_04745 PF07196 Flagellin hook IN motif HQ398_04745 PF07195 Flagellar hook-associated protein 2 C-terminus HQ398_04745 PF02465 Flagellar hook-associated protein 2 N-terminus HQ398_04750 PF02561 Flagellar protein FliS HQ398_04775 PF03102 NeuB family HQ398_04775 PF08666 SAF domain HQ398_04785 PF00202 Aminotransferase class-III HQ398_04790 PF02348 Cytidylyltransferase HQ398_04800 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_04805 PF02719 Polysaccharide biosynthesis protein HQ398_04810 PF01497 Periplasmic binding protein HQ398_04820 PF01048 Phosphorylase superfamily HQ398_04825 PF02535 ZIP Zinc transporter HQ398_04830 PF00672 HAMP domain HQ398_04830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_04835 PF00459 Inositol monophosphatase family HQ398_04845 PF00043 Glutathione S-transferase, C-terminal domain HQ398_04845 PF02798 Glutathione S-transferase, N-terminal domain HQ398_04850 PF07690 Major Facilitator Superfamily HQ398_04860 PF02634 FdhD/NarQ family HQ398_04865 PF00384 Molybdopterin oxidoreductase HQ398_04875 PF05164 Cell division protein ZapA HQ398_04880 PF03695 Uncharacterised protein family (UPF0149) HQ398_04885 PF01494 FAD binding domain HQ398_04890 PF01494 FAD binding domain HQ398_04895 PF01571 Aminomethyltransferase folate-binding domain HQ398_04895 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ398_04900 PF01597 Glycine cleavage H-protein HQ398_04905 PF02347 Glycine cleavage system P-protein HQ398_04915 PF09722 Protein of unknown function (DUF2384) HQ398_04935 PF12419 SNF2 Helicase protein HQ398_04935 PF00271 Helicase conserved C-terminal domain HQ398_04935 PF00176 SNF2 family N-terminal domain HQ398_04945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_04945 PF08447 PAS fold HQ398_04960 PF00324 Amino acid permease HQ398_04970 PF03618 Kinase/pyrophosphorylase HQ398_04975 PF00391 PEP-utilising enzyme, mobile domain HQ398_04975 PF02896 PEP-utilising enzyme, TIM barrel domain HQ398_04975 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ398_04985 PF01483 Proprotein convertase P-domain HQ398_04985 PF00082 Subtilase family HQ398_04990 PF03180 NLPA lipoprotein HQ398_04995 PF11893 Domain of unknown function (DUF3413) HQ398_04995 PF00884 Sulfatase HQ398_05000 PF07208 Protein of unknown function (DUF1414) HQ398_05005 PF04245 37-kD nucleoid-associated bacterial protein HQ398_05010 PF01547 Bacterial extracellular solute-binding protein HQ398_05015 PF14785 Maltose transport system permease protein MalF P2 domain HQ398_05015 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05020 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05025 PF00005 ABC transporter HQ398_05025 PF08402 TOBE domain HQ398_05035 PF00561 alpha/beta hydrolase fold HQ398_05045 PF01594 AI-2E family transporter HQ398_05050 PF01206 Sulfurtransferase TusA HQ398_05055 PF01435 Peptidase family M48 HQ398_05055 PF07720 Tetratricopeptide repeat HQ398_05060 PF00578 AhpC/TSA family HQ398_05065 PF03960 ArsC family HQ398_05075 PF04336 Acyl carrier protein phosphodiesterase HQ398_05080 PF01979 Amidohydrolase family HQ398_05085 PF03956 Lysine exporter LysO HQ398_05090 PF00005 ABC transporter HQ398_05095 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_05100 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05105 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05110 PF00849 RNA pseudouridylate synthase HQ398_05135 PF14497 Glutathione S-transferase, C-terminal domain HQ398_05135 PF02798 Glutathione S-transferase, N-terminal domain HQ398_05140 PF00733 Asparagine synthase HQ398_05140 PF13537 Glutamine amidotransferase domain HQ398_05150 PF02254 TrkA-N domain HQ398_05150 PF00999 Sodium/hydrogen exchanger family HQ398_05155 PF13344 Haloacid dehalogenase-like hydrolase HQ398_05160 PF00962 Adenosine/AMP deaminase HQ398_05165 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_05165 PF00107 Zinc-binding dehydrogenase HQ398_05170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_05185 PF02913 FAD linked oxidases, C-terminal domain HQ398_05185 PF01565 FAD binding domain HQ398_05185 PF13183 4Fe-4S dicluster domain HQ398_05195 PF03061 Thioesterase superfamily HQ398_05200 PF03880 DbpA RNA binding domain HQ398_05200 PF00271 Helicase conserved C-terminal domain HQ398_05200 PF00270 DEAD/DEAH box helicase HQ398_05210 PF00563 EAL domain HQ398_05210 PF00990 Diguanylate cyclase, GGDEF domain HQ398_05210 PF03707 Bacterial signalling protein N terminal repeat HQ398_05210 PF13188 PAS domain HQ398_05215 PF13726 Na+-H+ antiporter family HQ398_05215 PF03553 Na+/H+ antiporter family HQ398_05220 PF00929 Exonuclease HQ398_05225 PF01569 PAP2 superfamily HQ398_05235 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_05235 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_05245 PF01416 tRNA pseudouridine synthase HQ398_05250 PF01039 Carboxyl transferase domain HQ398_05250 PF17848 Acetyl-coA carboxylase zinc finger domain HQ398_05255 PF02875 Mur ligase family, glutamate ligase domain HQ398_05255 PF08245 Mur ligase middle domain HQ398_05260 PF05036 Sporulation related domain HQ398_05265 PF01906 Putative heavy-metal-binding HQ398_05275 PF10414 Sirohaem synthase dimerisation region HQ398_05275 PF14824 Sirohaem biosynthesis protein central HQ398_05275 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_05280 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_05280 PF13187 4Fe-4S dicluster domain HQ398_05280 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_05285 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ398_05285 PF00175 Oxidoreductase NAD-binding domain HQ398_05290 PF17179 4Fe-4S dicluster domain HQ398_05295 PF01734 Patatin-like phospholipase HQ398_05300 PF17676 LD-carboxypeptidase C-terminal domain HQ398_05300 PF02016 LD-carboxypeptidase N-terminal domain HQ398_05305 PF00884 Sulfatase HQ398_05315 PF00696 Amino acid kinase family HQ398_05315 PF01842 ACT domain HQ398_05325 PF01625 Peptide methionine sulfoxide reductase HQ398_05345 PF00561 alpha/beta hydrolase fold HQ398_05350 PF08447 PAS fold HQ398_05350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_05355 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_05355 PF08447 PAS fold HQ398_05355 PF13426 PAS domain HQ398_05380 PF01593 Flavin containing amine oxidoreductase HQ398_05385 PF03239 Iron permease FTR1 family HQ398_05420 PF00916 Sulfate permease family HQ398_05420 PF01740 STAS domain HQ398_05430 PF05638 Type VI secretion system effector, Hcp HQ398_05435 PF04717 Type VI secretion system, phage-baseplate injector HQ398_05455 PF02132 RecR protein HQ398_05455 PF13662 Toprim domain HQ398_05460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_05460 PF00183 Hsp90 protein HQ398_05465 PF00005 ABC transporter HQ398_05470 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_05470 PF00005 ABC transporter HQ398_05475 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05475 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_05485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_05495 PF04012 PspA/IM30 family HQ398_05500 PF06667 Phage shock protein B HQ398_05515 PF05128 Domain of unknown function (DUF697) HQ398_05520 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ398_05525 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ398_05530 PF00158 Sigma-54 interaction domain HQ398_05530 PF18024 Helix-turn-helix domain HQ398_05540 PF00990 Diguanylate cyclase, GGDEF domain HQ398_05540 PF17152 Periplasmic sensor domain HQ398_05545 PF00691 OmpA family HQ398_05550 PF03741 Integral membrane protein TerC family HQ398_05560 PF08891 YfcL protein HQ398_05565 PF00501 AMP-binding enzyme HQ398_05570 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_05580 PF13460 NAD(P)H-binding HQ398_05585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_05585 PF03466 LysR substrate binding domain HQ398_05590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_05590 PF03466 LysR substrate binding domain HQ398_05595 PF08267 Cobalamin-independent synthase, N-terminal domain HQ398_05595 PF01717 Cobalamin-independent synthase, Catalytic domain HQ398_05610 PF03466 LysR substrate binding domain HQ398_05610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_05615 PF00232 Glycosyl hydrolase family 1 HQ398_05620 PF18381 YcaO cyclodehydratase C-terminal domain HQ398_05620 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ398_05625 PF01226 Formate/nitrite transporter HQ398_05630 PF01228 Glycine radical HQ398_05630 PF02901 Pyruvate formate lyase-like HQ398_05635 PF03692 Putative zinc- or iron-chelating domain HQ398_05650 PF00343 Carbohydrate phosphorylase HQ398_05655 PF00939 Sodium:sulfate symporter transmembrane region HQ398_05660 PF00085 Thioredoxin HQ398_05665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_05665 PF01627 Hpt domain HQ398_05665 PF00072 Response regulator receiver domain HQ398_05665 PF00512 His Kinase A (phospho-acceptor) domain HQ398_05665 PF00672 HAMP domain HQ398_05665 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_05670 PF00664 ABC transporter transmembrane region HQ398_05670 PF00005 ABC transporter HQ398_05675 PF00664 ABC transporter transmembrane region HQ398_05675 PF00005 ABC transporter HQ398_05700 PF08543 Phosphomethylpyrimidine kinase HQ398_05710 PF01928 CYTH domain HQ398_05720 PF13673 Acetyltransferase (GNAT) domain HQ398_05730 PF00285 Citrate synthase, C-terminal domain HQ398_05740 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ398_05745 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ398_05750 PF02910 Fumarate reductase flavoprotein C-term HQ398_05750 PF00890 FAD binding domain HQ398_05755 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ398_05760 PF00676 Dehydrogenase E1 component HQ398_05760 PF02779 Transketolase, pyrimidine binding domain HQ398_05760 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ398_05760 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ398_05765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_05765 PF00364 Biotin-requiring enzyme HQ398_05765 PF02817 e3 binding domain HQ398_05770 PF08442 ATP-grasp domain HQ398_05770 PF00549 CoA-ligase HQ398_05775 PF02629 CoA binding domain HQ398_05775 PF00549 CoA-ligase HQ398_05785 PF01609 Transposase DDE domain HQ398_05790 PF07969 Amidohydrolase family HQ398_05800 PF01266 FAD dependent oxidoreductase HQ398_05805 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_05810 PF00005 ABC transporter HQ398_05825 PF00392 Bacterial regulatory proteins, gntR family HQ398_05825 PF07702 UTRA domain HQ398_05830 PF00266 Aminotransferase class-V HQ398_05835 PF00202 Aminotransferase class-III HQ398_05845 PF03918 Cytochrome C biogenesis protein HQ398_05850 PF08534 Redoxin HQ398_05865 PF00037 4Fe-4S binding domain HQ398_05865 PF13247 4Fe-4S dicluster domain HQ398_05870 PF13435 Cytochrome c554 and c-prime HQ398_05870 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ398_05875 PF02335 Cytochrome c552 HQ398_05890 PF13183 4Fe-4S dicluster domain HQ398_05890 PF02754 Cysteine-rich domain HQ398_05895 PF00890 FAD binding domain HQ398_05900 PF01266 FAD dependent oxidoreductase HQ398_05900 PF04324 BFD-like [2Fe-2S] binding domain HQ398_05910 PF02810 SEC-C motif HQ398_05915 PF00672 HAMP domain HQ398_05915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_05915 PF17200 Single Cache domain 2 HQ398_05920 PF01047 MarR family HQ398_05920 PF00480 ROK family HQ398_05925 PF03942 DTW domain HQ398_05930 PF01925 Sulfite exporter TauE/SafE HQ398_05935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_05935 PF03466 LysR substrate binding domain HQ398_05945 PF14525 AraC-binding-like domain HQ398_05945 PF12833 Helix-turn-helix domain HQ398_05950 PF11398 Protein of unknown function (DUF2813) HQ398_05960 PF00128 Alpha amylase, catalytic domain HQ398_05960 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_05995 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_05995 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ398_06000 PF13419 Haloacid dehalogenase-like hydrolase HQ398_06005 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_06015 PF01207 Dihydrouridine synthase (Dus) HQ398_06020 PF04304 Protein of unknown function (DUF454) HQ398_06025 PF00156 Phosphoribosyl transferase domain HQ398_06030 PF12169 DNA polymerase III subunits gamma and tau domain III HQ398_06030 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ398_06030 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ398_06035 PF02575 YbaB/EbfC DNA-binding family HQ398_06045 PF01965 DJ-1/PfpI family HQ398_06050 PF01261 Xylose isomerase-like TIM barrel HQ398_06055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_06055 PF03466 LysR substrate binding domain HQ398_06065 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_06070 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_06090 PF00136 DNA polymerase family B HQ398_06090 PF03104 DNA polymerase family B, exonuclease domain HQ398_06105 PF01863 Protein of unknown function DUF45 HQ398_06120 PF03606 C4-dicarboxylate anaerobic carrier HQ398_06135 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ398_06135 PF01266 FAD dependent oxidoreductase HQ398_06140 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_06140 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_06170 PF09335 SNARE associated Golgi protein HQ398_06175 PF02600 Disulfide bond formation protein DsbB HQ398_06180 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ398_06185 PF07840 FadR C-terminal domain HQ398_06185 PF00392 Bacterial regulatory proteins, gntR family HQ398_06195 PF07152 YaeQ protein HQ398_06205 PF02954 Bacterial regulatory protein, Fis family HQ398_06205 PF13188 PAS domain HQ398_06205 PF00158 Sigma-54 interaction domain HQ398_06235 PF01554 MatE HQ398_06240 PF06786 Uncharacterised protein family (UPF0253) HQ398_06250 PF00677 Lumazine binding domain HQ398_06265 PF13419 Haloacid dehalogenase-like hydrolase HQ398_06270 PF01370 NAD dependent epimerase/dehydratase family HQ398_06270 PF02222 ATP-grasp domain HQ398_06275 PF00892 EamA-like transporter family HQ398_06280 PF02525 Flavodoxin-like fold HQ398_06305 PF17783 CvfB-like winged helix domain HQ398_06305 PF13509 S1 domain HQ398_06315 PF04269 Protein of unknown function, DUF440 HQ398_06320 PF00912 Transglycosylase HQ398_06325 PF04269 Protein of unknown function, DUF440 HQ398_06330 PF03776 Septum formation topological specificity factor MinE HQ398_06335 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ398_06340 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ398_06340 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ398_06345 PF05166 YcgL domain HQ398_06350 PF01609 Transposase DDE domain HQ398_06360 PF03831 PhnA domain HQ398_06360 PF08274 PhnA Zinc-Ribbon HQ398_06370 PF00704 Glycosyl hydrolases family 18 HQ398_06370 PF08329 Chitinase A, N-terminal domain HQ398_06375 PF04828 Glutathione-dependent formaldehyde-activating enzyme HQ398_06380 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_06385 PF00990 Diguanylate cyclase, GGDEF domain HQ398_06385 PF08448 PAS fold HQ398_06390 PF01713 Smr domain HQ398_06395 PF05175 Methyltransferase small domain HQ398_06400 PF01264 Chorismate synthase HQ398_06410 PF00270 DEAD/DEAH box helicase HQ398_06410 PF00271 Helicase conserved C-terminal domain HQ398_06415 PF01124 MAPEG family HQ398_06430 PF03222 Tryptophan/tyrosine permease family HQ398_06435 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_06435 PF00356 Bacterial regulatory proteins, lacI family HQ398_06440 PF00381 PTS HPr component phosphorylation site HQ398_06440 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_06445 PF00294 pfkB family carbohydrate kinase HQ398_06450 PF02378 Phosphotransferase system, EIIC HQ398_06450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_06455 PF06560 Glucose-6-phosphate isomerase (GPI) HQ398_06475 PF03610 PTS system fructose IIA component HQ398_06475 PF03830 PTS system sorbose subfamily IIB component HQ398_06485 PF03613 PTS system mannose/fructose/sorbose family IID component HQ398_06495 PF06945 Protein of unknown function (DUF1289) HQ398_06500 PF06725 3D domain HQ398_06500 PF03562 MltA specific insert domain HQ398_06505 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_06510 PF00268 Ribonucleotide reductase, small chain HQ398_06515 PF03477 ATP cone domain HQ398_06515 PF02867 Ribonucleotide reductase, barrel domain HQ398_06515 PF00317 Ribonucleotide reductase, all-alpha domain HQ398_06520 PF13419 Haloacid dehalogenase-like hydrolase HQ398_06530 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ398_06530 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ398_06535 PF00128 Alpha amylase, catalytic domain HQ398_06545 PF04055 Radical SAM superfamily HQ398_06555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ398_06555 PF03129 Anticodon binding domain HQ398_06555 PF02824 TGS domain HQ398_06555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_06560 PF00707 Translation initiation factor IF-3, C-terminal domain HQ398_06560 PF05198 Translation initiation factor IF-3, N-terminal domain HQ398_06565 PF01632 Ribosomal protein L35 HQ398_06570 PF00453 Ribosomal protein L20 HQ398_06575 PF01323 DSBA-like thioredoxin domain HQ398_06580 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ398_06580 PF01409 tRNA synthetases class II core domain (F) HQ398_06585 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ398_06585 PF03147 Ferredoxin-fold anticodon binding domain HQ398_06585 PF03484 tRNA synthetase B5 domain HQ398_06585 PF01588 Putative tRNA binding domain HQ398_06585 PF03483 B3/4 domain HQ398_06590 PF00216 Bacterial DNA-binding protein HQ398_06595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_06595 PF00512 His Kinase A (phospho-acceptor) domain HQ398_06595 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ398_06595 PF00072 Response regulator receiver domain HQ398_06610 PF02146 Sir2 family HQ398_06615 PF00356 Bacterial regulatory proteins, lacI family HQ398_06620 PF00294 pfkB family carbohydrate kinase HQ398_06625 PF13407 Periplasmic binding protein domain HQ398_06630 PF02653 Branched-chain amino acid transport system / permease component HQ398_06635 PF00005 ABC transporter HQ398_06640 PF05025 RbsD / FucU transport protein family HQ398_06645 PF02798 Glutathione S-transferase, N-terminal domain HQ398_06645 PF00043 Glutathione S-transferase, C-terminal domain HQ398_06650 PF13416 Bacterial extracellular solute-binding protein HQ398_06655 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_06660 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_06665 PF00005 ABC transporter HQ398_06665 PF08402 TOBE domain HQ398_06680 PF01171 PP-loop family HQ398_06685 PF00582 Universal stress protein family HQ398_06690 PF13545 Crp-like helix-turn-helix domain HQ398_06690 PF00027 Cyclic nucleotide-binding domain HQ398_06705 PF00403 Heavy-metal-associated domain HQ398_06715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_06715 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ398_06730 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ398_06740 PF13185 GAF domain HQ398_06745 PF17516 ProQ C-terminal domain HQ398_06745 PF04352 ProQ/FINO family HQ398_06750 PF17804 Tail specific protease N-terminal domain HQ398_06750 PF00595 PDZ domain HQ398_06750 PF03572 Peptidase family S41 HQ398_06750 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ398_06755 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ398_06755 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ398_06755 PF01433 Peptidase family M1 domain HQ398_06765 PF05088 Bacterial NAD-glutamate dehydrogenase HQ398_06770 PF01180 Dihydroorotate dehydrogenase HQ398_06775 PF07126 Cell-division protein ZapC HQ398_06790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_06790 PF00672 HAMP domain HQ398_06795 PF00563 EAL domain HQ398_06795 PF01590 GAF domain HQ398_06795 PF00990 Diguanylate cyclase, GGDEF domain HQ398_06795 PF00360 Phytochrome region HQ398_06800 PF01339 CheB methylesterase HQ398_06800 PF00072 Response regulator receiver domain HQ398_06805 PF01739 CheR methyltransferase, SAM binding domain HQ398_06805 PF03705 CheR methyltransferase, all-alpha domain HQ398_06810 PF01584 CheW-like domain HQ398_06820 PF01584 CheW-like domain HQ398_06820 PF09078 CheY binding HQ398_06820 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_06820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_06820 PF01627 Hpt domain HQ398_06830 PF00072 Response regulator receiver domain HQ398_06830 PF01627 Hpt domain HQ398_06830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_06830 PF01584 CheW-like domain HQ398_06835 PF10672 S-adenosylmethionine-dependent methyltransferase HQ398_06835 PF02926 THUMP domain HQ398_06835 PF01170 Putative RNA methylase family UPF0020 HQ398_06845 PF00005 ABC transporter HQ398_06845 PF16326 ABC transporter C-terminal domain HQ398_06845 PF12848 ABC transporter HQ398_06850 PF04957 Ribosome modulation factor HQ398_06855 PF07977 FabA-like domain HQ398_06860 PF13654 AAA domain HQ398_06860 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ398_06875 PF07130 YebG protein HQ398_06885 PF00106 short chain dehydrogenase HQ398_06900 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ398_06900 PF00440 Bacterial regulatory proteins, tetR family HQ398_06910 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ398_06910 PF06974 Protein of unknown function (DUF1298) HQ398_06925 PF03972 MmgE/PrpD family HQ398_06930 PF00285 Citrate synthase, C-terminal domain HQ398_06945 PF04403 Paraquat-inducible protein A HQ398_06950 PF02470 MlaD protein HQ398_06955 PF01189 16S rRNA methyltransferase RsmB/F HQ398_06955 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ398_06955 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ398_06965 PF00589 Phage integrase family HQ398_06970 PF01026 TatD related DNase HQ398_06975 PF09115 DNA polymerase III, delta subunit, C terminal HQ398_06980 PF02223 Thymidylate kinase HQ398_06985 PF02618 YceG-like family HQ398_06990 PF01063 Amino-transferase class IV HQ398_06995 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_06995 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_07000 PF00550 Phosphopantetheine attachment site HQ398_07010 PF00698 Acyl transferase domain HQ398_07015 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ398_07015 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ398_07020 PF02504 Fatty acid synthesis protein HQ398_07025 PF01783 Ribosomal L32p protein family HQ398_07030 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ398_07035 PF02545 Maf-like protein HQ398_07040 PF01609 Transposase DDE domain HQ398_07045 PF13419 Haloacid dehalogenase-like hydrolase HQ398_07050 PF00849 RNA pseudouridylate synthase HQ398_07050 PF01479 S4 domain HQ398_07055 PF12111 Polyribonucleotide phosphorylase C terminal HQ398_07055 PF10150 Ribonuclease E/G family HQ398_07055 PF00575 S1 RNA binding domain HQ398_07065 PF01384 Phosphate transporter family HQ398_07070 PF00692 dUTPase HQ398_07075 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_07080 PF10609 NUBPL iron-transfer P-loop NTPase HQ398_07085 PF08264 Anticodon-binding domain of tRNA HQ398_07085 PF09334 tRNA synthetases class I (M) HQ398_07085 PF01588 Putative tRNA binding domain HQ398_07095 PF00708 Acylphosphatase HQ398_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_07100 PF00672 HAMP domain HQ398_07105 PF17785 PUA-like domain HQ398_07105 PF10672 S-adenosylmethionine-dependent methyltransferase HQ398_07115 PF00586 AIR synthase related protein, N-terminal domain HQ398_07115 PF02769 AIR synthase related protein, C-terminal domain HQ398_07125 PF00753 Metallo-beta-lactamase superfamily HQ398_07130 PF00570 HRDC domain HQ398_07130 PF01612 3'-5' exonuclease HQ398_07135 PF00501 AMP-binding enzyme HQ398_07135 PF13193 AMP-binding enzyme C-terminal domain HQ398_07140 PF00561 alpha/beta hydrolase fold HQ398_07150 PF00814 Glycoprotease family HQ398_07155 PF13307 Helicase C-terminal domain HQ398_07155 PF04851 Type III restriction enzyme, res subunit HQ398_07165 PF01634 ATP phosphoribosyltransferase HQ398_07165 PF08029 HisG, C-terminal domain HQ398_07170 PF00815 Histidinol dehydrogenase HQ398_07175 PF00155 Aminotransferase class I and II HQ398_07180 PF00475 Imidazoleglycerol-phosphate dehydratase HQ398_07180 PF08645 Polynucleotide kinase 3 phosphatase HQ398_07185 PF00117 Glutamine amidotransferase class-I HQ398_07190 PF00977 Histidine biosynthesis protein HQ398_07195 PF00977 Histidine biosynthesis protein HQ398_07200 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ398_07200 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ398_07210 PF00990 Diguanylate cyclase, GGDEF domain HQ398_07210 PF08448 PAS fold HQ398_07220 PF03606 C4-dicarboxylate anaerobic carrier HQ398_07230 PF05433 Glycine zipper 2TM domain HQ398_07235 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_07235 PF01799 [2Fe-2S] binding domain HQ398_07240 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ398_07240 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ398_07245 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ398_07245 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ398_07255 PF00860 Permease family HQ398_07260 PF01979 Amidohydrolase family HQ398_07270 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ398_07270 PF01799 [2Fe-2S] binding domain HQ398_07270 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ398_07275 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ398_07280 PF01979 Amidohydrolase family HQ398_07285 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_07285 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_07295 PF12804 MobA-like NTP transferase domain HQ398_07305 PF13478 XdhC Rossmann domain HQ398_07305 PF02625 XdhC and CoxI family HQ398_07310 PF00892 EamA-like transporter family HQ398_07315 PF00696 Amino acid kinase family HQ398_07320 PF01979 Amidohydrolase family HQ398_07325 PF07687 Peptidase dimerisation domain HQ398_07325 PF01546 Peptidase family M20/M25/M40 HQ398_07330 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_07335 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_07335 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_07360 PF01327 Polypeptide deformylase HQ398_07370 PF03330 Lytic transglycolase HQ398_07375 PF16330 MukB hinge domain HQ398_07375 PF04310 MukB N-terminal HQ398_07380 PF04288 MukE-like family HQ398_07385 PF17192 MukF middle domain HQ398_07385 PF17193 MukF C-terminal domain HQ398_07385 PF03882 MukF winged-helix domain HQ398_07390 PF13847 Methyltransferase domain HQ398_07395 PF02698 DUF218 domain HQ398_07400 PF00121 Triosephosphate isomerase HQ398_07405 PF00365 Phosphofructokinase HQ398_07410 PF00375 Sodium:dicarboxylate symporter family HQ398_07415 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ398_07420 PF03315 Serine dehydratase beta chain HQ398_07420 PF03313 Serine dehydratase alpha chain HQ398_07425 PF03315 Serine dehydratase beta chain HQ398_07425 PF03313 Serine dehydratase alpha chain HQ398_07435 PF00425 chorismate binding enzyme HQ398_07435 PF04715 Anthranilate synthase component I, N terminal region HQ398_07440 PF00293 NUDIX domain HQ398_07445 PF03222 Tryptophan/tyrosine permease family HQ398_07450 PF00375 Sodium:dicarboxylate symporter family HQ398_07455 PF00570 HRDC domain HQ398_07455 PF16124 RecQ zinc-binding HQ398_07455 PF09382 RQC domain HQ398_07455 PF00270 DEAD/DEAH box helicase HQ398_07455 PF00271 Helicase conserved C-terminal domain HQ398_07460 PF08298 PrkA AAA domain HQ398_07460 PF06798 PrkA serine protein kinase C-terminal domain HQ398_07465 PF04285 Protein of unknown function (DUF444) HQ398_07470 PF04293 SpoVR like protein HQ398_07475 PF00378 Enoyl-CoA hydratase/isomerase HQ398_07475 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ398_07475 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ398_07480 PF00108 Thiolase, N-terminal domain HQ398_07480 PF02803 Thiolase, C-terminal domain HQ398_07485 PF07726 ATPase family associated with various cellular activities (AAA) HQ398_07485 PF17863 AAA lid domain HQ398_07505 PF13519 von Willebrand factor type A domain HQ398_07515 PF08281 Sigma-70, region 4 HQ398_07515 PF04542 Sigma-70 region 2 HQ398_07525 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ398_07530 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ398_07535 PF00563 EAL domain HQ398_07535 PF08668 HDOD domain HQ398_07540 PF00108 Thiolase, N-terminal domain HQ398_07540 PF02803 Thiolase, C-terminal domain HQ398_07545 PF00376 MerR family regulatory protein HQ398_07545 PF09278 MerR, DNA binding HQ398_07550 PF01386 Ribosomal L25p family HQ398_07560 PF00271 Helicase conserved C-terminal domain HQ398_07560 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ398_07560 PF11898 Domain of unknown function (DUF3418) HQ398_07560 PF00270 DEAD/DEAH box helicase HQ398_07560 PF04408 Helicase associated domain (HA2) HQ398_07565 PF00571 CBS domain HQ398_07565 PF01368 DHH family HQ398_07565 PF02272 DHHA1 domain HQ398_07565 PF01743 Poly A polymerase head domain HQ398_07570 PF01966 HD domain HQ398_07575 PF00929 Exonuclease HQ398_07575 PF08411 Exonuclease C-terminal HQ398_07590 PF03788 LrgA family HQ398_07595 PF04172 LrgB-like family HQ398_07600 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_07600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ398_07605 PF01212 Beta-eliminating lyase HQ398_07615 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ398_07625 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_07625 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_07630 PF02634 FdhD/NarQ family HQ398_07635 PF00158 Sigma-54 interaction domain HQ398_07635 PF02954 Bacterial regulatory protein, Fis family HQ398_07635 PF01590 GAF domain HQ398_07650 PF12800 4Fe-4S binding domain HQ398_07650 PF13247 4Fe-4S dicluster domain HQ398_07655 PF01609 Transposase DDE domain HQ398_07670 PF00583 Acetyltransferase (GNAT) family HQ398_07675 PF02705 K+ potassium transporter HQ398_07680 PF12798 4Fe-4S binding domain HQ398_07680 PF00037 4Fe-4S binding domain HQ398_07685 PF00361 Proton-conducting membrane transporter HQ398_07690 PF00146 NADH dehydrogenase HQ398_07695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ398_07695 PF00374 Nickel-dependent hydrogenase HQ398_07695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ398_07700 PF12838 4Fe-4S dicluster domain HQ398_07705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_07710 PF07450 Formate hydrogenlyase maturation protein HycH HQ398_07715 PF01750 Hydrogenase maturation protease HQ398_07725 PF12390 Selenocysteine synthase N terminal HQ398_07725 PF03841 L-seryl-tRNA selenium transferase HQ398_07730 PF00009 Elongation factor Tu GTP binding domain HQ398_07730 PF03144 Elongation factor Tu domain 2 HQ398_07730 PF09105 Elongation factor SelB, winged helix HQ398_07730 PF09106 Elongation factor SelB, winged helix HQ398_07730 PF09107 Elongation factor SelB, winged helix HQ398_07735 PF00708 Acylphosphatase HQ398_07735 PF07503 HypF finger HQ398_07735 PF01300 Telomere recombination HQ398_07735 PF17788 HypF Kae1-like domain HQ398_07740 PF01455 HupF/HypC family HQ398_07745 PF01924 Hydrogenase formation hypA family HQ398_07755 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ398_07760 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ398_07765 PF00005 ABC transporter HQ398_07765 PF08402 TOBE domain HQ398_07770 PF00005 ABC transporter HQ398_07775 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_07775 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_07785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_07790 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ398_07795 PF01750 Hydrogenase maturation protease HQ398_07800 PF00374 Nickel-dependent hydrogenase HQ398_07805 PF03916 Polysulphide reductase, NrfD HQ398_07810 PF13247 4Fe-4S dicluster domain HQ398_07815 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ398_07815 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_07850 PF00239 Resolvase, N terminal domain HQ398_07850 PF02796 Helix-turn-helix domain of resolvase HQ398_07865 PF04002 RadC-like JAB domain HQ398_07900 PF01609 Transposase DDE domain HQ398_07905 PF01420 Type I restriction modification DNA specificity domain HQ398_07910 PF02384 N-6 DNA Methylase HQ398_07930 PF01925 Sulfite exporter TauE/SafE HQ398_07935 PF13520 Amino acid permease HQ398_07945 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ398_07945 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ398_07950 PF00378 Enoyl-CoA hydratase/isomerase HQ398_07955 PF00378 Enoyl-CoA hydratase/isomerase HQ398_07960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_07960 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_07960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_07965 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_07965 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_07965 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_07970 PF01039 Carboxyl transferase domain HQ398_07975 PF00378 Enoyl-CoA hydratase/isomerase HQ398_07980 PF02785 Biotin carboxylase C-terminal domain HQ398_07980 PF00289 Biotin carboxylase, N-terminal domain HQ398_07980 PF00364 Biotin-requiring enzyme HQ398_07980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ398_07985 PF00682 HMGL-like HQ398_07990 PF09278 MerR, DNA binding HQ398_07990 PF00376 MerR family regulatory protein HQ398_08005 PF01184 GPR1/FUN34/yaaH family HQ398_08010 PF06167 Glucose-regulated metallo-peptidase M90 HQ398_08015 PF00583 Acetyltransferase (GNAT) family HQ398_08020 PF01235 Sodium:alanine symporter family HQ398_08025 PF00378 Enoyl-CoA hydratase/isomerase HQ398_08040 PF04341 Protein of unknown function, DUF485 HQ398_08045 PF00474 Sodium:solute symporter family HQ398_08050 PF00005 ABC transporter HQ398_08050 PF12848 ABC transporter HQ398_08055 PF13145 PPIC-type PPIASE domain HQ398_08060 PF00216 Bacterial DNA-binding protein HQ398_08065 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ398_08065 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_08065 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ398_08070 PF07724 AAA domain (Cdc48 subfamily) HQ398_08070 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_08070 PF06689 ClpX C4-type zinc finger HQ398_08075 PF00574 Clp protease HQ398_08080 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_08080 PF05697 Bacterial trigger factor protein (TF) HQ398_08080 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ398_08095 PF12704 MacB-like periplasmic core domain HQ398_08095 PF02687 FtsX-like permease family HQ398_08100 PF00005 ABC transporter HQ398_08105 PF02687 FtsX-like permease family HQ398_08105 PF12704 MacB-like periplasmic core domain HQ398_08115 PF02559 CarD-like/TRCF domain HQ398_08115 PF17757 UvrB interaction domain HQ398_08115 PF03461 TRCF domain HQ398_08115 PF00271 Helicase conserved C-terminal domain HQ398_08115 PF00270 DEAD/DEAH box helicase HQ398_08120 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ398_08125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_08130 PF00892 EamA-like transporter family HQ398_08140 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_08145 PF00675 Insulinase (Peptidase family M16) HQ398_08145 PF05193 Peptidase M16 inactive domain HQ398_08150 PF05724 Thiopurine S-methyltransferase (TPMT) HQ398_08170 PF01609 Transposase DDE domain HQ398_08180 PF00117 Glutamine amidotransferase class-I HQ398_08180 PF02540 NAD synthase HQ398_08180 PF00958 GMP synthase C terminal domain HQ398_08185 PF00478 IMP dehydrogenase / GMP reductase domain HQ398_08185 PF00571 CBS domain HQ398_08200 PF02705 K+ potassium transporter HQ398_08210 PF01618 MotA/TolQ/ExbB proton channel family HQ398_08215 PF02472 Biopolymer transport protein ExbD/TolR HQ398_08220 PF13742 OB-fold nucleic acid binding domain HQ398_08220 PF02601 Exonuclease VII, large subunit HQ398_08225 PF00392 Bacterial regulatory proteins, gntR family HQ398_08225 PF07702 UTRA domain HQ398_08230 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_08230 PF02378 Phosphotransferase system, EIIC HQ398_08230 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_08235 PF09261 Alpha mannosidase middle domain HQ398_08235 PF01074 Glycosyl hydrolases family 38 N-terminal domain HQ398_08235 PF07748 Glycosyl hydrolases family 38 C-terminal domain HQ398_08240 PF07478 D-ala D-ala ligase C-terminus HQ398_08240 PF01820 D-ala D-ala ligase N-terminus HQ398_08250 PF00255 Glutathione peroxidase HQ398_08255 PF00271 Helicase conserved C-terminal domain HQ398_08255 PF00270 DEAD/DEAH box helicase HQ398_08260 PF04055 Radical SAM superfamily HQ398_08265 PF00672 HAMP domain HQ398_08265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_08270 PF00793 DAHP synthetase I family HQ398_08275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ398_08280 PF00266 Aminotransferase class-V HQ398_08290 PF01012 Electron transfer flavoprotein domain HQ398_08300 PF01544 CorA-like Mg2+ transporter protein HQ398_08305 PF11143 Protein of unknown function (DUF2919) HQ398_08315 PF07273 Protein of unknown function (DUF1439) HQ398_08325 PF00483 Nucleotidyl transferase HQ398_08345 PF00294 pfkB family carbohydrate kinase HQ398_08355 PF00762 Ferrochelatase HQ398_08360 PF05191 Adenylate kinase, active site lid HQ398_08365 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ398_08370 PF00156 Phosphoribosyl transferase domain HQ398_08375 PF02674 Colicin V production protein HQ398_08380 PF02403 Seryl-tRNA synthetase N-terminal domain HQ398_08380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_08390 PF03548 Outer membrane lipoprotein carrier protein LolA HQ398_08395 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ398_08395 PF17854 FtsK alpha domain HQ398_08395 PF09397 Ftsk gamma domain HQ398_08395 PF01580 FtsK/SpoIIIE family HQ398_08400 PF01037 Lrp/AsnC ligand binding domain HQ398_08410 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_08415 PF00990 Diguanylate cyclase, GGDEF domain HQ398_08420 PF05433 Glycine zipper 2TM domain HQ398_08425 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ398_08430 PF04377 Arginine-tRNA-protein transferase, C terminus HQ398_08430 PF04376 Arginine-tRNA-protein transferase, N terminus HQ398_08435 PF01176 Translation initiation factor 1A / IF-1 HQ398_08440 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_08440 PF17871 AAA lid domain HQ398_08440 PF02861 Clp amino terminal domain, pathogenicity island component HQ398_08440 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_08440 PF07724 AAA domain (Cdc48 subfamily) HQ398_08445 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ398_08450 PF00313 'Cold-shock' DNA-binding domain HQ398_08455 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ398_08455 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ398_08475 PF00486 Transcriptional regulatory protein, C terminal HQ398_08475 PF00072 Response regulator receiver domain HQ398_08480 PF00672 HAMP domain HQ398_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_08480 PF00512 His Kinase A (phospho-acceptor) domain HQ398_08490 PF09924 Uncharacterised conserved protein (DUF2156) HQ398_08490 PF03706 Lysylphosphatidylglycerol synthase TM region HQ398_08500 PF01219 Prokaryotic diacylglycerol kinase HQ398_08505 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_08505 PF00884 Sulfatase HQ398_08520 PF10722 Putative bacterial sensory transduction regulator HQ398_08530 PF00265 Thymidine kinase HQ398_08535 PF03553 Na+/H+ antiporter family HQ398_08540 PF00816 H-NS histone family HQ398_08545 PF01923 Cobalamin adenosyltransferase HQ398_08550 PF12843 Putative quorum-sensing-regulated virulence factor HQ398_08555 PF04055 Radical SAM superfamily HQ398_08560 PF06508 Queuosine biosynthesis protein QueC HQ398_08575 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ398_08580 PF18073 Rubredoxin metal binding domain HQ398_08590 PF00216 Bacterial DNA-binding protein HQ398_08595 PF00575 S1 RNA binding domain HQ398_08600 PF02224 Cytidylate kinase HQ398_08605 PF00925 GTP cyclohydrolase II HQ398_08610 PF03466 LysR substrate binding domain HQ398_08610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_08615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_08615 PF03466 LysR substrate binding domain HQ398_08620 PF07690 Major Facilitator Superfamily HQ398_08635 PF00881 Nitroreductase family HQ398_08640 PF03806 AbgT putative transporter family HQ398_08645 PF00990 Diguanylate cyclase, GGDEF domain HQ398_08645 PF00563 EAL domain HQ398_08645 PF03707 Bacterial signalling protein N terminal repeat HQ398_08645 PF13188 PAS domain HQ398_08650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_08650 PF03466 LysR substrate binding domain HQ398_08655 PF00072 Response regulator receiver domain HQ398_08665 PF01212 Beta-eliminating lyase HQ398_08670 PF00106 short chain dehydrogenase HQ398_08680 PF00248 Aldo/keto reductase family HQ398_08685 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ398_08695 PF00005 ABC transporter HQ398_08700 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_08705 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_08710 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_08715 PF03411 Penicillin-insensitive murein endopeptidase HQ398_08725 PF04536 TPM domain HQ398_08740 PF01618 MotA/TolQ/ExbB proton channel family HQ398_08745 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_08745 PF00691 OmpA family HQ398_08750 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ398_08755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ398_08760 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ398_08760 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ398_08770 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ398_08770 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ398_08775 PF00384 Molybdopterin oxidoreductase HQ398_08775 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_08775 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_08780 PF00146 NADH dehydrogenase HQ398_08785 PF12838 4Fe-4S dicluster domain HQ398_08790 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ398_08795 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ398_08800 PF00361 Proton-conducting membrane transporter HQ398_08800 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ398_08805 PF00361 Proton-conducting membrane transporter HQ398_08810 PF00361 Proton-conducting membrane transporter HQ398_08815 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ398_08815 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ398_08815 PF02769 AIR synthase related protein, C-terminal domain HQ398_08820 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_08820 PF01464 Transglycosylase SLT domain HQ398_08825 PF07191 zinc-ribbons HQ398_08830 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ398_08830 PF01926 50S ribosome-binding GTPase HQ398_08835 PF13360 PQQ-like domain HQ398_08840 PF09976 Tetratricopeptide repeat-like domain HQ398_08845 PF03129 Anticodon binding domain HQ398_08845 PF13393 Histidyl-tRNA synthetase HQ398_08850 PF04551 GcpE protein HQ398_08855 PF13464 Domain of unknown function (DUF4115) HQ398_08865 PF04055 Radical SAM superfamily HQ398_08870 PF00334 Nucleoside diphosphate kinase HQ398_08875 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_08875 PF12404 Peptidase HQ398_08880 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_08880 PF12404 Peptidase HQ398_08885 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_08890 PF00012 Hsp70 protein HQ398_08895 PF07743 HSCB C-terminal oligomerisation domain HQ398_08900 PF01521 Iron-sulphur cluster biosynthesis HQ398_08905 PF01592 NifU-like N terminal domain HQ398_08910 PF00266 Aminotransferase class-V HQ398_08915 PF02082 Transcriptional regulator HQ398_08920 PF00588 SpoU rRNA Methylase family HQ398_08930 PF02036 SCP-2 sterol transfer family HQ398_08935 PF01136 Peptidase family U32 HQ398_08940 PF01136 Peptidase family U32 HQ398_08945 PF07719 Tetratricopeptide repeat HQ398_08945 PF13181 Tetratricopeptide repeat HQ398_08955 PF07549 SecD/SecF GG Motif HQ398_08955 PF02355 Protein export membrane protein HQ398_08960 PF07549 SecD/SecF GG Motif HQ398_08960 PF13721 SecD export protein N-terminal TM region HQ398_08960 PF02355 Protein export membrane protein HQ398_08965 PF02699 Preprotein translocase subunit HQ398_08970 PF01702 Queuine tRNA-ribosyltransferase HQ398_08975 PF02547 Queuosine biosynthesis protein HQ398_08980 PF00005 ABC transporter HQ398_08980 PF00571 CBS domain HQ398_08985 PF00578 AhpC/TSA family HQ398_08985 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ398_08990 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_08990 PF13192 Thioredoxin domain HQ398_09035 PF16199 Radical_SAM C-terminal domain HQ398_09035 PF04055 Radical SAM superfamily HQ398_09045 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ398_09045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_09050 PF00005 ABC transporter HQ398_09055 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_09060 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_09075 PF00271 Helicase conserved C-terminal domain HQ398_09075 PF00270 DEAD/DEAH box helicase HQ398_09090 PF07664 Ferrous iron transport protein B C terminus HQ398_09090 PF17910 FeoB cytosolic helical domain HQ398_09090 PF02421 Ferrous iron transport protein B HQ398_09090 PF07670 Nucleoside recognition HQ398_09105 PF01169 Uncharacterized protein family UPF0016 HQ398_09135 PF01979 Amidohydrolase family HQ398_09155 PF01406 tRNA synthetases class I (C) catalytic domain HQ398_09155 PF09190 DALR domain HQ398_09160 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ398_09170 PF00149 Calcineurin-like phosphoesterase HQ398_09175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_09175 PF00672 HAMP domain HQ398_09180 PF04226 Transglycosylase associated protein HQ398_09185 PF00512 His Kinase A (phospho-acceptor) domain HQ398_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_09185 PF08521 Two-component sensor kinase N-terminal HQ398_09225 PF04717 Type VI secretion system, phage-baseplate injector HQ398_09235 PF05638 Type VI secretion system effector, Hcp HQ398_09265 PF00936 BMC domain HQ398_09270 PF00936 BMC domain HQ398_09275 PF00936 BMC domain HQ398_09280 PF00171 Aldehyde dehydrogenase family HQ398_09280 PF00465 Iron-containing alcohol dehydrogenase HQ398_09290 PF00465 Iron-containing alcohol dehydrogenase HQ398_09295 PF02901 Pyruvate formate lyase-like HQ398_09295 PF01228 Glycine radical HQ398_09300 PF13187 4Fe-4S dicluster domain HQ398_09300 PF04055 Radical SAM superfamily HQ398_09305 PF00936 BMC domain HQ398_09310 PF06130 Phosphate propanoyltransferase HQ398_09320 PF00893 Small Multidrug Resistance protein HQ398_09325 PF00893 Small Multidrug Resistance protein HQ398_09350 PF01066 CDP-alcohol phosphatidyltransferase HQ398_09355 PF01541 GIY-YIG catalytic domain HQ398_09355 PF02151 UvrB/uvrC motif HQ398_09355 PF08459 UvrC Helix-hairpin-helix N-terminal HQ398_09360 PF00072 Response regulator receiver domain HQ398_09360 PF00196 Bacterial regulatory proteins, luxR family HQ398_09365 PF02348 Cytidylyltransferase HQ398_09370 PF03966 Trm112p-like protein HQ398_09375 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ398_09380 PF00664 ABC transporter transmembrane region HQ398_09380 PF00005 ABC transporter HQ398_09400 PF00155 Aminotransferase class I and II HQ398_09410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_09410 PF03466 LysR substrate binding domain HQ398_09415 PF04219 Protein of unknown function, DUF HQ398_09420 PF03974 Ecotin HQ398_09425 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ398_09430 PF01266 FAD dependent oxidoreductase HQ398_09430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ398_09435 PF00455 DeoR C terminal sensor domain HQ398_09435 PF08220 DeoR-like helix-turn-helix domain HQ398_09440 PF07690 Major Facilitator Superfamily HQ398_09445 PF00230 Major intrinsic protein HQ398_09450 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ398_09450 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ398_09455 PF00672 HAMP domain HQ398_09455 PF02743 Cache domain HQ398_09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_09465 PF03466 LysR substrate binding domain HQ398_09490 PF00248 Aldo/keto reductase family HQ398_09495 PF07690 Major Facilitator Superfamily HQ398_09500 PF02525 Flavodoxin-like fold HQ398_09515 PF05114 Protein of unknown function (DUF692) HQ398_09535 PF02322 Cytochrome bd terminal oxidase subunit II HQ398_09540 PF01654 Cytochrome bd terminal oxidase subunit I HQ398_09545 PF00155 Aminotransferase class I and II HQ398_09545 PF00392 Bacterial regulatory proteins, gntR family HQ398_09555 PF03061 Thioesterase superfamily HQ398_09560 PF10689 Protein of unknown function (DUF2496) HQ398_09565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_09565 PF03466 LysR substrate binding domain HQ398_09575 PF07690 Major Facilitator Superfamily HQ398_09580 PF00849 RNA pseudouridylate synthase HQ398_09580 PF01479 S4 domain HQ398_09585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_09595 PF01844 HNH endonuclease HQ398_09600 PF02508 Rnf-Nqr subunit, membrane protein HQ398_09605 PF04060 Putative Fe-S cluster HQ398_09610 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ398_09610 PF13375 RnfC Barrel sandwich hybrid domain HQ398_09610 PF10531 SLBB domain HQ398_09610 PF12838 4Fe-4S dicluster domain HQ398_09615 PF03116 NQR2, RnfD, RnfE family HQ398_09620 PF04205 FMN-binding domain HQ398_09625 PF02508 Rnf-Nqr subunit, membrane protein HQ398_09630 PF10576 Iron-sulfur binding domain of endonuclease III HQ398_09630 PF00633 Helix-hairpin-helix motif HQ398_09630 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ398_09635 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_09640 PF18393 MotY N-terminal domain HQ398_09640 PF00691 OmpA family HQ398_09650 PF00141 Peroxidase HQ398_09660 PF07759 Protein of unknown function (DUF1615) HQ398_09670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ398_09670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ398_09670 PF02142 MGS-like domain HQ398_09675 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ398_09675 PF00117 Glutamine amidotransferase class-I HQ398_09680 PF01113 Dihydrodipicolinate reductase, N-terminus HQ398_09680 PF05173 Dihydrodipicolinate reductase, C-terminus HQ398_09690 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ398_09695 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ398_09700 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_09700 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_09700 PF01842 ACT domain HQ398_09705 PF01219 Prokaryotic diacylglycerol kinase HQ398_09710 PF00793 DAHP synthetase I family HQ398_09715 PF00005 ABC transporter HQ398_09720 PF01032 FecCD transport family HQ398_09735 PF00437 Type II/IV secretion system protein HQ398_09745 PF01168 Alanine racemase, N-terminal domain HQ398_09745 PF00842 Alanine racemase, C-terminal domain HQ398_09750 PF03741 Integral membrane protein TerC family HQ398_09755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_09755 PF00005 ABC transporter HQ398_09760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_09760 PF00005 ABC transporter HQ398_09775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_09780 PF01914 MarC family integral membrane protein HQ398_09785 PF00465 Iron-containing alcohol dehydrogenase HQ398_09785 PF00171 Aldehyde dehydrogenase family HQ398_09790 PF00892 EamA-like transporter family HQ398_09795 PF01609 Transposase DDE domain HQ398_09800 PF08019 Phosphoethanolamine transferase EptA/EptB HQ398_09800 PF00884 Sulfatase HQ398_09805 PF01709 Transcriptional regulator HQ398_09810 PF02938 GAD domain HQ398_09810 PF00152 tRNA synthetases class II (D, K and N) HQ398_09810 PF01336 OB-fold nucleic acid binding domain HQ398_09820 PF01904 Protein of unknown function DUF72 HQ398_09825 PF13649 Methyltransferase domain HQ398_09830 PF08003 Protein of unknown function (DUF1698) HQ398_09850 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ398_09850 PF00578 AhpC/TSA family HQ398_09855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_09855 PF03466 LysR substrate binding domain HQ398_09860 PF00877 NlpC/P60 family HQ398_09870 PF03466 LysR substrate binding domain HQ398_09870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_09875 PF02447 GntP family permease HQ398_09880 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_09885 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ398_09890 PF12833 Helix-turn-helix domain HQ398_09895 PF01238 Phosphomannose isomerase type I HQ398_09930 PF04069 Substrate binding domain of ABC-type glycine betaine transport system HQ398_09935 PF00005 ABC transporter HQ398_09945 PF02668 Taurine catabolism dioxygenase TauD, TfdA family HQ398_09950 PF05656 Protein of unknown function (DUF805) HQ398_09955 PF07690 Major Facilitator Superfamily HQ398_09960 PF01040 UbiA prenyltransferase family HQ398_09965 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ398_09970 PF00510 Cytochrome c oxidase subunit III HQ398_09980 PF06481 COX Aromatic Rich Motif HQ398_09980 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ398_09990 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_09990 PF00034 Cytochrome c HQ398_10000 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_10010 PF00171 Aldehyde dehydrogenase family HQ398_10015 PF08359 YsiA-like protein, C-terminal region HQ398_10015 PF00440 Bacterial regulatory proteins, tetR family HQ398_10025 PF00465 Iron-containing alcohol dehydrogenase HQ398_10040 PF01740 STAS domain HQ398_10040 PF00916 Sulfate permease family HQ398_10045 PF01554 MatE HQ398_10060 PF04325 Protein of unknown function (DUF465) HQ398_10065 PF04337 Protein of unknown function, DUF480 HQ398_10075 PF00127 Copper binding proteins, plastocyanin/azurin family HQ398_10080 PF02424 ApbE family HQ398_10095 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_10115 PF00005 ABC transporter HQ398_10120 PF00005 ABC transporter HQ398_10125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_10130 PF00873 AcrB/AcrD/AcrF family HQ398_10140 PF00529 HlyD membrane-fusion protein of T1SS HQ398_10140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_10145 PF00873 AcrB/AcrD/AcrF family HQ398_10155 PF01497 Periplasmic binding protein HQ398_10160 PF00005 ABC transporter HQ398_10165 PF01032 FecCD transport family HQ398_10170 PF01032 FecCD transport family HQ398_10175 PF08021 Siderophore-interacting FAD-binding domain HQ398_10175 PF04954 Siderophore-interacting protein HQ398_10180 PF11849 Domain of unknown function (DUF3369) HQ398_10190 PF00929 Exonuclease HQ398_10195 PF00075 RNase H HQ398_10200 PF08241 Methyltransferase domain HQ398_10205 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ398_10205 PF00753 Metallo-beta-lactamase superfamily HQ398_10210 PF01464 Transglycosylase SLT domain HQ398_10210 PF01476 LysM domain HQ398_10215 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ398_10230 PF04434 SWIM zinc finger HQ398_10230 PF00176 SNF2 family N-terminal domain HQ398_10230 PF00271 Helicase conserved C-terminal domain HQ398_10240 PF03734 L,D-transpeptidase catalytic domain HQ398_10240 PF01476 LysM domain HQ398_10240 PF17969 L,D-transpeptidase C-terminal domain HQ398_10250 PF00939 Sodium:sulfate symporter transmembrane region HQ398_10255 PF01575 MaoC like domain HQ398_10260 PF05971 RNA methyltransferase HQ398_10265 PF00877 NlpC/P60 family HQ398_10270 PF01648 4'-phosphopantetheinyl transferase superfamily HQ398_10275 PF00085 Thioredoxin HQ398_10285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ398_10290 PF00551 Formyl transferase HQ398_10290 PF01842 ACT domain HQ398_10300 PF13396 Phospholipase_D-nuclease N-terminal HQ398_10300 PF13091 PLD-like domain HQ398_10315 PF01551 Peptidase family M23 HQ398_10315 PF10145 Phage-related minor tail protein HQ398_10315 PF01464 Transglycosylase SLT domain HQ398_10320 PF00230 Major intrinsic protein HQ398_10330 PF00155 Aminotransferase class I and II HQ398_10335 PF03606 C4-dicarboxylate anaerobic carrier HQ398_10340 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ398_10340 PF07055 Enoyl reductase FAD binding domain HQ398_10340 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ398_10345 PF13407 Periplasmic binding protein domain HQ398_10355 PF00300 Histidine phosphatase superfamily (branch 1) HQ398_10360 PF13309 HTH domain HQ398_10360 PF08348 YheO-like PAS domain HQ398_10365 PF03313 Serine dehydratase alpha chain HQ398_10370 PF01042 Endoribonuclease L-PSP HQ398_10395 PF17810 Arginine decarboxylase helical bundle domain HQ398_10395 PF17944 Arginine decarboxylase C-terminal helical extension HQ398_10395 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_10400 PF01546 Peptidase family M20/M25/M40 HQ398_10400 PF07687 Peptidase dimerisation domain HQ398_10425 PF04264 YceI-like domain HQ398_10430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_10430 PF03466 LysR substrate binding domain HQ398_10445 PF00672 HAMP domain HQ398_10445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_10445 PF17200 Single Cache domain 2 HQ398_10450 PF01227 GTP cyclohydrolase I HQ398_10455 PF00994 Probable molybdopterin binding domain HQ398_10455 PF03454 MoeA C-terminal region (domain IV) HQ398_10455 PF03453 MoeA N-terminal region (domain I and II) HQ398_10460 PF00899 ThiF family HQ398_10470 PF06406 StbA protein HQ398_10475 PF00561 alpha/beta hydrolase fold HQ398_10480 PF00005 ABC transporter HQ398_10480 PF03459 TOBE domain HQ398_10485 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_10495 PF02391 MoaE protein HQ398_10500 PF02597 ThiS family HQ398_10505 PF01967 MoaC family HQ398_10515 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ398_10520 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ398_10525 PF12801 4Fe-4S binding domain HQ398_10525 PF12837 4Fe-4S binding domain HQ398_10530 PF12800 4Fe-4S binding domain HQ398_10530 PF12838 4Fe-4S dicluster domain HQ398_10535 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ398_10535 PF01568 Molydopterin dinucleotide binding domain HQ398_10535 PF00384 Molybdopterin oxidoreductase HQ398_10535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_10545 PF00037 4Fe-4S binding domain HQ398_10545 PF12800 4Fe-4S binding domain HQ398_10545 PF13187 4Fe-4S dicluster domain HQ398_10550 PF06463 Molybdenum Cofactor Synthesis C HQ398_10550 PF04055 Radical SAM superfamily HQ398_10555 PF07730 Histidine kinase HQ398_10555 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ398_10555 PF00672 HAMP domain HQ398_10555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_10560 PF00196 Bacterial regulatory proteins, luxR family HQ398_10560 PF00072 Response regulator receiver domain HQ398_10570 PF00672 HAMP domain HQ398_10570 PF00072 Response regulator receiver domain HQ398_10570 PF01627 Hpt domain HQ398_10570 PF00512 His Kinase A (phospho-acceptor) domain HQ398_10570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_10570 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ398_10580 PF01933 Uncharacterised protein family UPF0052 HQ398_10590 PF13230 Glutamine amidotransferases class-II HQ398_10595 PF13580 SIS domain HQ398_10600 PF09317 Domain of unknown function (DUF1974) HQ398_10600 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_10600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_10600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_10605 PF01546 Peptidase family M20/M25/M40 HQ398_10605 PF07687 Peptidase dimerisation domain HQ398_10610 PF03658 RnfH family Ubiquitin HQ398_10615 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ398_10620 PF01668 SmpB protein HQ398_10630 PF13356 Arm DNA-binding domain HQ398_10630 PF00589 Phage integrase family HQ398_10645 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ398_10655 PF09588 YqaJ-like viral recombinase domain HQ398_10700 PF04002 RadC-like JAB domain HQ398_10720 PF01609 Transposase DDE domain HQ398_10775 PF00717 Peptidase S24-like HQ398_10780 PF13438 Domain of unknown function (DUF4113) HQ398_10780 PF11798 IMS family HHH motif HQ398_10780 PF00817 impB/mucB/samB family HQ398_10780 PF11799 impB/mucB/samB family C-terminal domain HQ398_10820 PF14338 Mrr N-terminal domain HQ398_10820 PF04471 Restriction endonuclease HQ398_10830 PF02384 N-6 DNA Methylase HQ398_10830 PF12161 HsdM N-terminal domain HQ398_10885 PF00083 Sugar (and other) transporter HQ398_10890 PF17128 Domain of unknown function (DUF5107) HQ398_10890 PF13181 Tetratricopeptide repeat HQ398_10895 PF00480 ROK family HQ398_10900 PF12838 4Fe-4S dicluster domain HQ398_10900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_10900 PF00384 Molybdopterin oxidoreductase HQ398_10900 PF01568 Molydopterin dinucleotide binding domain HQ398_10900 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_10915 PF00440 Bacterial regulatory proteins, tetR family HQ398_10920 PF09317 Domain of unknown function (DUF1974) HQ398_10920 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ398_10920 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ398_10920 PF02770 Acyl-CoA dehydrogenase, middle domain HQ398_10925 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ398_10940 PF02108 Flagellar assembly protein FliH HQ398_10945 PF06578 YOP proteins translocation protein K (YscK) HQ398_10950 PF01514 Secretory protein of YscJ/FliF family HQ398_10955 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ398_10960 PF09025 YopR, type III needle-polymerisation regulator HQ398_10965 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ398_10970 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ398_10980 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ398_10980 PF16693 Inner membrane component of T3SS, periplasmic domain HQ398_10985 PF00263 Bacterial type II and III secretion system protein HQ398_10985 PF03958 Bacterial type II/III secretion system short domain HQ398_10990 PF05932 Tir chaperone protein (CesT) family HQ398_10995 PF01609 Transposase DDE domain HQ398_11000 PF16806 Antiactivator protein ExsD HQ398_11005 PF12833 Helix-turn-helix domain HQ398_11020 PF05932 Tir chaperone protein (CesT) family HQ398_11025 PF05844 YopD protein HQ398_11030 PF04888 Secretion system effector C (SseC) like family HQ398_11035 PF07720 Tetratricopeptide repeat HQ398_11040 PF04792 V antigen (LcrV) protein HQ398_11045 PF07216 LcrG protein HQ398_11055 PF00771 FHIPEP family HQ398_11075 PF09059 TyeA HQ398_11080 PF07201 HrpJ-like domain HQ398_11085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_11085 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_11085 PF18269 T3SS EscN ATPase C-terminal domain HQ398_11095 PF02120 Flagellar hook-length control protein FliK HQ398_11100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_11105 PF00813 FliP family HQ398_11110 PF01313 Bacterial export proteins, family 3 HQ398_11115 PF01311 Bacterial export proteins, family 1 HQ398_11120 PF01312 FlhB HrpN YscU SpaS Family HQ398_11135 PF00155 Aminotransferase class I and II HQ398_11140 PF00367 phosphotransferase system, EIIB HQ398_11140 PF02378 Phosphotransferase system, EIIC HQ398_11145 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_11145 PF00356 Bacterial regulatory proteins, lacI family HQ398_11155 PF13580 SIS domain HQ398_11165 PF02378 Phosphotransferase system, EIIC HQ398_11165 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_11165 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_11170 PF07690 Major Facilitator Superfamily HQ398_11175 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_11185 PF00849 RNA pseudouridylate synthase HQ398_11190 PF00293 NUDIX domain HQ398_11200 PF04356 Protein of unknown function (DUF489) HQ398_11205 PF00206 Lyase HQ398_11205 PF08328 Adenylosuccinate lyase C-terminal HQ398_11210 PF08007 Cupin superfamily protein HQ398_11230 PF00294 pfkB family carbohydrate kinase HQ398_11250 PF00043 Glutathione S-transferase, C-terminal domain HQ398_11250 PF13417 Glutathione S-transferase, N-terminal domain HQ398_11255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ398_11255 PF01243 Pyridoxamine 5'-phosphate oxidase HQ398_11260 PF01189 16S rRNA methyltransferase RsmB/F HQ398_11260 PF01029 NusB family HQ398_11265 PF01042 Endoribonuclease L-PSP HQ398_11270 PF01228 Glycine radical HQ398_11270 PF02901 Pyruvate formate lyase-like HQ398_11275 PF00871 Acetokinase family HQ398_11280 PF03222 Tryptophan/tyrosine permease family HQ398_11290 PF00462 Glutaredoxin HQ398_11295 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ398_11295 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ398_11300 PF04333 MlaA lipoprotein HQ398_11305 PF03918 Cytochrome C biogenesis protein HQ398_11315 PF08534 Redoxin HQ398_11320 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ398_11320 PF01578 Cytochrome C assembly protein HQ398_11325 PF03100 CcmE HQ398_11330 PF04995 Heme exporter protein D (CcmD) HQ398_11335 PF01578 Cytochrome C assembly protein HQ398_11340 PF03379 CcmB protein HQ398_11345 PF00005 ABC transporter HQ398_11355 PF01584 CheW-like domain HQ398_11365 PF13614 AAA domain HQ398_11370 PF00691 OmpA family HQ398_11370 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ398_11375 PF01618 MotA/TolQ/ExbB proton channel family HQ398_11380 PF00072 Response regulator receiver domain HQ398_11380 PF01339 CheB methylesterase HQ398_11385 PF01584 CheW-like domain HQ398_11385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_11385 PF01627 Hpt domain HQ398_11385 PF02895 Signal transducing histidine kinase, homodimeric domain HQ398_11385 PF00072 Response regulator receiver domain HQ398_11390 PF04344 Chemotaxis phosphatase, CheZ HQ398_11395 PF00072 Response regulator receiver domain HQ398_11400 PF04539 Sigma-70 region 3 HQ398_11400 PF04545 Sigma-70, region 4 HQ398_11400 PF04542 Sigma-70 region 2 HQ398_11405 PF10609 NUBPL iron-transfer P-loop NTPase HQ398_11410 PF00448 SRP54-type protein, GTPase domain HQ398_11415 PF00771 FHIPEP family HQ398_11430 PF01313 Bacterial export proteins, family 3 HQ398_11435 PF00813 FliP family HQ398_11440 PF04347 Flagellar biosynthesis protein, FliO HQ398_11445 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_11450 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_11450 PF02154 Flagellar motor switch protein FliM HQ398_11470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_11470 PF18269 T3SS EscN ATPase C-terminal domain HQ398_11480 PF01706 FliG C-terminal domain HQ398_11480 PF14841 FliG middle domain HQ398_11480 PF14842 FliG N-terminal domain HQ398_11485 PF01514 Secretory protein of YscJ/FliF family HQ398_11485 PF08345 Flagellar M-ring protein C-terminal HQ398_11490 PF02049 Flagellar hook-basal body complex protein FliE HQ398_11500 PF02887 Pyruvate kinase, alpha/beta domain HQ398_11500 PF00224 Pyruvate kinase, barrel domain HQ398_11505 PF01418 Helix-turn-helix domain, rpiR family HQ398_11505 PF01380 SIS domain HQ398_11510 PF02685 Glucokinase HQ398_11535 PF00672 HAMP domain HQ398_11535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_11540 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_11545 PF00860 Permease family HQ398_11550 PF00390 Malic enzyme, N-terminal domain HQ398_11550 PF03949 Malic enzyme, NAD binding domain HQ398_11555 PF00072 Response regulator receiver domain HQ398_11555 PF00486 Transcriptional regulatory protein, C terminal HQ398_11565 PF13247 4Fe-4S dicluster domain HQ398_11570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_11570 PF01568 Molydopterin dinucleotide binding domain HQ398_11570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_11570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ398_11570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ398_11570 PF01568 Molydopterin dinucleotide binding domain HQ398_11570 PF00384 Molybdopterin oxidoreductase HQ398_11570 PF00384 Molybdopterin oxidoreductase HQ398_11570 PF12838 4Fe-4S dicluster domain HQ398_11570 PF12838 4Fe-4S dicluster domain HQ398_11610 PF02634 FdhD/NarQ family HQ398_11620 PF00512 His Kinase A (phospho-acceptor) domain HQ398_11620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_11620 PF00989 PAS fold HQ398_11625 PF02954 Bacterial regulatory protein, Fis family HQ398_11625 PF00072 Response regulator receiver domain HQ398_11625 PF00158 Sigma-54 interaction domain HQ398_11630 PF12849 PBP superfamily domain HQ398_11635 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_11640 PF00005 ABC transporter HQ398_11650 PF00994 Probable molybdopterin binding domain HQ398_11650 PF03454 MoeA C-terminal region (domain IV) HQ398_11650 PF03453 MoeA N-terminal region (domain I and II) HQ398_11655 PF04632 Fusaric acid resistance protein family HQ398_11670 PF13426 PAS domain HQ398_11670 PF08447 PAS fold HQ398_11670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_11680 PF10725 Protein of unknown function (DUF2517) HQ398_11700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_11700 PF00512 His Kinase A (phospho-acceptor) domain HQ398_11700 PF09308 LuxQ, periplasmic HQ398_11700 PF00072 Response regulator receiver domain HQ398_11705 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_11710 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_11715 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ398_11715 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_11720 PF00005 ABC transporter HQ398_11720 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_11725 PF00005 ABC transporter HQ398_11725 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ398_11740 PF02838 Glycosyl hydrolase family 20, domain 2 HQ398_11740 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ398_11755 PF01131 DNA topoisomerase HQ398_11755 PF08272 Topoisomerase I zinc-ribbon-like HQ398_11755 PF01396 Topoisomerase DNA binding C4 zinc finger HQ398_11755 PF01751 Toprim domain HQ398_11760 PF04996 Succinylarginine dihydrolase HQ398_11785 PF00512 His Kinase A (phospho-acceptor) domain HQ398_11785 PF01627 Hpt domain HQ398_11785 PF00072 Response regulator receiver domain HQ398_11785 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_11785 PF00672 HAMP domain HQ398_11785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_11790 PF00072 Response regulator receiver domain HQ398_11790 PF00196 Bacterial regulatory proteins, luxR family HQ398_11800 PF15976 CS1-pili formation C-terminal HQ398_11800 PF16967 E-set like domain HQ398_11815 PF00563 EAL domain HQ398_11815 PF01590 GAF domain HQ398_11815 PF00990 Diguanylate cyclase, GGDEF domain HQ398_11815 PF00989 PAS fold HQ398_11820 PF16325 Peptidase family U32 C-terminal domain HQ398_11820 PF01136 Peptidase family U32 HQ398_11825 PF12838 4Fe-4S dicluster domain HQ398_11835 PF02635 DsrE/DsrF-like family HQ398_11840 PF00990 Diguanylate cyclase, GGDEF domain HQ398_11845 PF07690 Major Facilitator Superfamily HQ398_11850 PF01343 Peptidase family S49 HQ398_11850 PF08496 Peptidase family S49 N-terminal HQ398_11855 PF00106 short chain dehydrogenase HQ398_11860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_11860 PF03466 LysR substrate binding domain HQ398_11865 PF07690 Major Facilitator Superfamily HQ398_11870 PF00155 Aminotransferase class I and II HQ398_11885 PF00709 Adenylosuccinate synthetase HQ398_11890 PF01161 Phosphatidylethanolamine-binding protein HQ398_11910 PF03167 Uracil DNA glycosylase superfamily HQ398_11920 PF01228 Glycine radical HQ398_11925 PF00375 Sodium:dicarboxylate symporter family HQ398_11930 PF00793 DAHP synthetase I family HQ398_11935 PF13369 Transglutaminase-like superfamily HQ398_11945 PF13847 Methyltransferase domain HQ398_11945 PF17827 PrmC N-terminal domain HQ398_11950 PF00472 RF-1 domain HQ398_11950 PF03462 PCRF domain HQ398_11955 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ398_11955 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ398_11955 PF01488 Shikimate / quinate 5-dehydrogenase HQ398_11960 PF03550 Outer membrane lipoprotein LolB HQ398_11965 PF08544 GHMP kinases C terminal HQ398_11965 PF00288 GHMP kinases N terminal domain HQ398_11975 PF14572 Phosphoribosyl synthetase-associated domain HQ398_11975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ398_11980 PF02872 5'-nucleotidase, C-terminal domain HQ398_11980 PF00149 Calcineurin-like phosphoesterase HQ398_11985 PF01195 Peptidyl-tRNA hydrolase HQ398_11990 PF01926 50S ribosome-binding GTPase HQ398_11990 PF06071 Protein of unknown function (DUF933) HQ398_11995 PF00171 Aldehyde dehydrogenase family HQ398_12000 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_12005 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_12010 PF08402 TOBE domain HQ398_12010 PF00005 ABC transporter HQ398_12015 PF13416 Bacterial extracellular solute-binding protein HQ398_12020 PF03466 LysR substrate binding domain HQ398_12020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_12065 PF02080 TrkA-C domain HQ398_12065 PF03600 Citrate transporter HQ398_12070 PF04973 Nicotinamide mononucleotide transporter HQ398_12075 PF01048 Phosphorylase superfamily HQ398_12085 PF04266 ASCH domain HQ398_12095 PF00128 Alpha amylase, catalytic domain HQ398_12095 PF11941 Domain of unknown function (DUF3459) HQ398_12100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_12100 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ398_12100 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ398_12100 PF10371 Domain of unknown function HQ398_12100 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ398_12105 PF07690 Major Facilitator Superfamily HQ398_12110 PF13419 Haloacid dehalogenase-like hydrolase HQ398_12125 PF00171 Aldehyde dehydrogenase family HQ398_12130 PF04958 Arginine N-succinyltransferase beta subunit HQ398_12140 PF00117 Glutamine amidotransferase class-I HQ398_12150 PF00579 tRNA synthetases class I (W and Y) HQ398_12155 PF13419 Haloacid dehalogenase-like hydrolase HQ398_12160 PF00834 Ribulose-phosphate 3 epimerase family HQ398_12165 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ398_12175 PF01761 3-dehydroquinate synthase HQ398_12180 PF01202 Shikimate kinase HQ398_12185 PF11741 AMIN domain HQ398_12185 PF00263 Bacterial type II and III secretion system protein HQ398_12185 PF03958 Bacterial type II/III secretion system short domain HQ398_12185 PF07660 Secretin and TonB N terminus short domain HQ398_12195 PF04350 Pilus assembly protein, PilO HQ398_12205 PF11104 Type IV pilus assembly protein PilM; HQ398_12210 PF17092 Penicillin-binding protein OB-like domain HQ398_12210 PF00912 Transglycosylase HQ398_12210 PF00905 Penicillin binding protein transpeptidase domain HQ398_12215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_12215 PF03466 LysR substrate binding domain HQ398_12220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_12220 PF00672 HAMP domain HQ398_12220 PF02743 Cache domain HQ398_12245 PF01551 Peptidase family M23 HQ398_12245 PF08525 Opacity-associated protein A N-terminal motif HQ398_12245 PF01476 LysM domain HQ398_12255 PF00924 Mechanosensitive ion channel HQ398_12255 PF12795 Mechanosensitive ion channel porin domain HQ398_12255 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ398_12260 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ398_12265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_12265 PF00672 HAMP domain HQ398_12265 PF02743 Cache domain HQ398_12270 PF00890 FAD binding domain HQ398_12270 PF02910 Fumarate reductase flavoprotein C-term HQ398_12275 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ398_12275 PF13183 4Fe-4S dicluster domain HQ398_12280 PF02300 Fumarate reductase subunit C HQ398_12285 PF02313 Fumarate reductase subunit D HQ398_12290 PF07670 Nucleoside recognition HQ398_12295 PF07670 Nucleoside recognition HQ398_12300 PF01546 Peptidase family M20/M25/M40 HQ398_12300 PF07687 Peptidase dimerisation domain HQ398_12310 PF06224 Winged helix DNA-binding domain HQ398_12315 PF17932 Tetracyclin repressor-like, C-terminal domain HQ398_12315 PF00440 Bacterial regulatory proteins, tetR family HQ398_12325 PF01266 FAD dependent oxidoreductase HQ398_12340 PF00501 AMP-binding enzyme HQ398_12340 PF13193 AMP-binding enzyme C-terminal domain HQ398_12365 PF08521 Two-component sensor kinase N-terminal HQ398_12365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_12365 PF00512 His Kinase A (phospho-acceptor) domain HQ398_12375 PF00478 IMP dehydrogenase / GMP reductase domain HQ398_12385 PF01132 Elongation factor P (EF-P) OB domain HQ398_12385 PF08207 Elongation factor P (EF-P) KOW-like domain HQ398_12385 PF09285 Elongation factor P, C-terminal HQ398_12395 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_12395 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_12405 PF03466 LysR substrate binding domain HQ398_12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_12415 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ398_12420 PF03606 C4-dicarboxylate anaerobic carrier HQ398_12430 PF13419 Haloacid dehalogenase-like hydrolase HQ398_12440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_12440 PF03466 LysR substrate binding domain HQ398_12445 PF00990 Diguanylate cyclase, GGDEF domain HQ398_12450 PF00857 Isochorismatase family HQ398_12460 PF01494 FAD binding domain HQ398_12465 PF04055 Radical SAM superfamily HQ398_12465 PF01938 TRAM domain HQ398_12465 PF00919 Uncharacterized protein family UPF0004 HQ398_12470 PF02562 PhoH-like protein HQ398_12475 PF02130 Uncharacterized protein family UPF0054 HQ398_12480 PF00571 CBS domain HQ398_12480 PF03471 Transporter associated domain HQ398_12490 PF02508 Rnf-Nqr subunit, membrane protein HQ398_12500 PF01368 DHH family HQ398_12500 PF02272 DHHA1 domain HQ398_12500 PF17768 RecJ OB domain HQ398_12510 PF01741 Large-conductance mechanosensitive channel, MscL HQ398_12515 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_12515 PF00589 Phage integrase family HQ398_12520 PF00258 Flavodoxin HQ398_12525 PF01523 Putative modulator of DNA gyrase HQ398_12530 PF01523 Putative modulator of DNA gyrase HQ398_12535 PF02463 RecF/RecN/SMC N terminal domain HQ398_12540 PF07295 Zinc-ribbon containing domain HQ398_12545 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ398_12545 PF08264 Anticodon-binding domain of tRNA HQ398_12545 PF00133 tRNA synthetases class I (I, L, M and V) HQ398_12560 PF01467 Cytidylyltransferase-like HQ398_12575 PF03717 Penicillin-binding Protein dimerisation domain HQ398_12575 PF00905 Penicillin binding protein transpeptidase domain HQ398_12580 PF01098 Cell cycle protein HQ398_12585 PF13406 Transglycosylase SLT domain HQ398_12595 PF07943 Penicillin-binding protein 5, C-terminal domain HQ398_12595 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_12600 PF04359 Protein of unknown function (DUF493) HQ398_12605 PF03099 Biotin/lipoate A/B protein ligase family HQ398_12610 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ398_12610 PF04055 Radical SAM superfamily HQ398_12630 PF07023 Protein of unknown function (DUF1315) HQ398_12635 PF00710 Asparaginase, N-terminal HQ398_12635 PF17763 Glutaminase/Asparaginase C-terminal domain HQ398_12640 PF03616 Sodium/glutamate symporter HQ398_12645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_12645 PF00672 HAMP domain HQ398_12645 PF02743 Cache domain HQ398_12655 PF00152 tRNA synthetases class II (D, K and N) HQ398_12655 PF01336 OB-fold nucleic acid binding domain HQ398_12660 PF00667 FAD binding domain HQ398_12660 PF00258 Flavodoxin HQ398_12660 PF00175 Oxidoreductase NAD-binding domain HQ398_12665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_12665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_12670 PF01507 Phosphoadenosine phosphosulfate reductase family HQ398_12675 PF00186 Dihydrofolate reductase HQ398_12680 PF12821 Threonine/Serine exporter, ThrE HQ398_12685 PF06738 Putative threonine/serine exporter HQ398_12695 PF00994 Probable molybdopterin binding domain HQ398_12705 PF06004 Bacterial protein of unknown function (DUF903) HQ398_12710 PF00581 Rhodanese-like domain HQ398_12715 PF04960 Glutaminase HQ398_12720 PF04320 Protein with unknown function (DUF469) HQ398_12725 PF02390 Putative methyltransferase HQ398_12730 PF00155 Aminotransferase class I and II HQ398_12735 PF12792 CSS motif domain associated with EAL HQ398_12735 PF00563 EAL domain HQ398_12750 PF00005 ABC transporter HQ398_12755 PF13472 GDSL-like Lipase/Acylhydrolase family HQ398_12760 PF01584 CheW-like domain HQ398_12760 PF00072 Response regulator receiver domain HQ398_12765 PF00704 Glycosyl hydrolases family 18 HQ398_12765 PF06483 Chitinase C HQ398_12800 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ398_12800 PF18416 N-acetylglucosamine binding protein domain 2 HQ398_12805 PF12561 ToxR activated gene A lipoprotein domain HQ398_12805 PF17945 Beta/Gamma crystallin HQ398_12810 PF00704 Glycosyl hydrolases family 18 HQ398_12810 PF08329 Chitinase A, N-terminal domain HQ398_12825 PF13443 Cro/C1-type HTH DNA-binding domain HQ398_12835 PF12832 MFS_1 like family HQ398_12840 PF01609 Transposase DDE domain HQ398_12870 PF05638 Type VI secretion system effector, Hcp HQ398_12875 PF00196 Bacterial regulatory proteins, luxR family HQ398_12875 PF03472 Autoinducer binding domain HQ398_12900 PF01243 Pyridoxamine 5'-phosphate oxidase HQ398_12905 PF06228 Haem utilisation ChuX/HutX HQ398_12915 PF01032 FecCD transport family HQ398_12920 PF00005 ABC transporter HQ398_12930 PF07694 5TMR of 5TMR-LYT HQ398_12930 PF06580 Histidine kinase HQ398_12935 PF04397 LytTr DNA-binding domain HQ398_12935 PF00072 Response regulator receiver domain HQ398_12940 PF02554 Carbon starvation protein CstA HQ398_12940 PF13722 5TM C-terminal transporter carbon starvation CstA HQ398_12945 PF03575 Peptidase family S51 HQ398_12950 PF01894 Uncharacterised protein family UPF0047 HQ398_12955 PF00842 Alanine racemase, C-terminal domain HQ398_12955 PF01168 Alanine racemase, N-terminal domain HQ398_12960 PF00772 DnaB-like helicase N terminal domain HQ398_12960 PF03796 DnaB-like helicase C terminal domain HQ398_12970 PF00149 Calcineurin-like phosphoesterase HQ398_12970 PF02872 5'-nucleotidase, C-terminal domain HQ398_12995 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ398_12995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_13005 PF04102 SlyX HQ398_13010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_13015 PF09526 Probable metal-binding protein (DUF2387) HQ398_13025 PF01584 CheW-like domain HQ398_13025 PF00072 Response regulator receiver domain HQ398_13035 PF00360 Phytochrome region HQ398_13035 PF00990 Diguanylate cyclase, GGDEF domain HQ398_13035 PF00563 EAL domain HQ398_13035 PF01590 GAF domain HQ398_13040 PF06794 Uncharacterised protein family (UPF0270) HQ398_13045 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_13060 PF02566 OsmC-like protein HQ398_13065 PF00027 Cyclic nucleotide-binding domain HQ398_13065 PF13545 Crp-like helix-turn-helix domain HQ398_13075 PF00267 Gram-negative porin HQ398_13085 PF00582 Universal stress protein family HQ398_13110 PF04227 Indigoidine synthase A like protein HQ398_13140 PF00550 Phosphopantetheine attachment site HQ398_13145 PF00550 Phosphopantetheine attachment site HQ398_13155 PF00501 AMP-binding enzyme HQ398_13155 PF13193 AMP-binding enzyme C-terminal domain HQ398_13160 PF07977 FabA-like domain HQ398_13170 PF00221 Aromatic amino acid lyase HQ398_13195 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ398_13195 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ398_13200 PF07977 FabA-like domain HQ398_13215 PF00561 alpha/beta hydrolase fold HQ398_13230 PF06877 Regulator of ribonuclease activity B HQ398_13235 PF03707 Bacterial signalling protein N terminal repeat HQ398_13235 PF00563 EAL domain HQ398_13235 PF00990 Diguanylate cyclase, GGDEF domain HQ398_13300 PF06826 Predicted Permease Membrane Region HQ398_13300 PF02080 TrkA-C domain HQ398_13310 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ398_13315 PF04279 Intracellular septation protein A HQ398_13320 PF03795 YCII-related domain HQ398_13325 PF00459 Inositol monophosphatase family HQ398_13330 PF00455 DeoR C terminal sensor domain HQ398_13330 PF08220 DeoR-like helix-turn-helix domain HQ398_13335 PF08013 Tagatose 6 phosphate kinase HQ398_13340 PF01380 SIS domain HQ398_13345 PF03830 PTS system sorbose subfamily IIB component HQ398_13350 PF03609 PTS system sorbose-specific iic component HQ398_13355 PF03613 PTS system mannose/fructose/sorbose family IID component HQ398_13360 PF03610 PTS system fructose IIA component HQ398_13365 PF01979 Amidohydrolase family HQ398_13370 PF01116 Fructose-bisphosphate aldolase class-II HQ398_13375 PF00367 phosphotransferase system, EIIB HQ398_13375 PF02378 Phosphotransferase system, EIIC HQ398_13380 PF00155 Aminotransferase class I and II HQ398_13385 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ398_13390 PF02565 Recombination protein O C terminal HQ398_13390 PF11967 Recombination protein O N terminal HQ398_13395 PF07650 KH domain HQ398_13395 PF01926 50S ribosome-binding GTPase HQ398_13400 PF00035 Double-stranded RNA binding motif HQ398_13400 PF14622 Ribonuclease-III-like HQ398_13405 PF10502 Signal peptidase, peptidase S26 HQ398_13410 PF00679 Elongation factor G C-terminus HQ398_13410 PF06421 GTP-binding protein LepA C-terminus HQ398_13410 PF03144 Elongation factor Tu domain 2 HQ398_13410 PF00009 Elongation factor Tu GTP binding domain HQ398_13420 PF03888 MucB/RseB N-terminal domain HQ398_13420 PF17188 MucB/RseB C-terminal domain HQ398_13425 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ398_13425 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ398_13430 PF04542 Sigma-70 region 2 HQ398_13430 PF08281 Sigma-70, region 4 HQ398_13435 PF00890 FAD binding domain HQ398_13435 PF02910 Fumarate reductase flavoprotein C-term HQ398_13445 PF03937 Flavinator of succinate dehydrogenase HQ398_13455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_13455 PF03466 LysR substrate binding domain HQ398_13470 PF03091 CutA1 divalent ion tolerance protein HQ398_13475 PF02683 Cytochrome C biogenesis protein transmembrane region HQ398_13475 PF11412 Disulphide bond corrector protein DsbC HQ398_13495 PF01266 FAD dependent oxidoreductase HQ398_13500 PF01116 Fructose-bisphosphate aldolase class-II HQ398_13505 PF00162 Phosphoglycerate kinase HQ398_13510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ398_13510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ398_13515 PF00480 ROK family HQ398_13520 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ398_13525 PF00293 NUDIX domain HQ398_13525 PF09297 NADH pyrophosphatase zinc ribbon domain HQ398_13530 PF14850 DNA-binding domain of Proline dehydrogenase HQ398_13530 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ398_13530 PF00171 Aldehyde dehydrogenase family HQ398_13530 PF01619 Proline dehydrogenase HQ398_13535 PF08239 Bacterial SH3 domain HQ398_13540 PF00027 Cyclic nucleotide-binding domain HQ398_13540 PF00520 Ion transport protein HQ398_13545 PF00672 HAMP domain HQ398_13545 PF02743 Cache domain HQ398_13545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_13550 PF08335 GlnD PII-uridylyltransferase HQ398_13550 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ398_13570 PF00072 Response regulator receiver domain HQ398_13570 PF00486 Transcriptional regulatory protein, C terminal HQ398_13585 PF00293 NUDIX domain HQ398_13585 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ398_13585 PF09297 NADH pyrophosphatase zinc ribbon domain HQ398_13615 PF00445 Ribonuclease T2 family HQ398_13625 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ398_13635 PF00990 Diguanylate cyclase, GGDEF domain HQ398_13640 PF00271 Helicase conserved C-terminal domain HQ398_13640 PF00270 DEAD/DEAH box helicase HQ398_13645 PF00939 Sodium:sulfate symporter transmembrane region HQ398_13650 PF00753 Metallo-beta-lactamase superfamily HQ398_13655 PF01609 Transposase DDE domain HQ398_13665 PF01425 Amidase HQ398_13670 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ398_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_13675 PF03466 LysR substrate binding domain HQ398_13685 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ398_13690 PF00140 Sigma-70 factor, region 1.2 HQ398_13690 PF04542 Sigma-70 region 2 HQ398_13690 PF04539 Sigma-70 region 3 HQ398_13690 PF04545 Sigma-70, region 4 HQ398_13695 PF01551 Peptidase family M23 HQ398_13695 PF01476 LysM domain HQ398_13700 PF09335 SNARE associated Golgi protein HQ398_13710 PF01975 Survival protein SurE HQ398_13715 PF01142 tRNA pseudouridine synthase D (TruD) HQ398_13720 PF02542 YgbB family HQ398_13730 PF04977 Septum formation initiator HQ398_13735 PF00474 Sodium:solute symporter family HQ398_13745 PF17969 L,D-transpeptidase C-terminal domain HQ398_13745 PF03734 L,D-transpeptidase catalytic domain HQ398_13750 PF00924 Mechanosensitive ion channel HQ398_13755 PF00871 Acetokinase family HQ398_13760 PF04074 YhcH/YjgK/YiaL HQ398_13770 PF01177 Asp/Glu/Hydantoin racemase HQ398_13775 PF01810 LysE type translocator HQ398_13800 PF01380 SIS domain HQ398_13800 PF00571 CBS domain HQ398_13805 PF12848 ABC transporter HQ398_13805 PF00005 ABC transporter HQ398_13815 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ398_13825 PF01609 Transposase DDE domain HQ398_13830 PF00561 alpha/beta hydrolase fold HQ398_13840 PF03952 Enolase, N-terminal domain HQ398_13840 PF00113 Enolase, C-terminal TIM barrel domain HQ398_13845 PF00117 Glutamine amidotransferase class-I HQ398_13845 PF06418 CTP synthase N-terminus HQ398_13850 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ398_13855 PF13291 ACT domain HQ398_13855 PF04607 Region found in RelA / SpoT proteins HQ398_13855 PF02824 TGS domain HQ398_13865 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ398_13865 PF00672 HAMP domain HQ398_13865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_13865 PF00072 Response regulator receiver domain HQ398_13865 PF01627 Hpt domain HQ398_13865 PF00512 His Kinase A (phospho-acceptor) domain HQ398_13870 PF07308 Protein of unknown function (DUF1456) HQ398_13875 PF01510 N-acetylmuramoyl-L-alanine amidase HQ398_13880 PF00210 Ferritin-like domain HQ398_13885 PF03063 Prismane/CO dehydrogenase family HQ398_13890 PF00175 Oxidoreductase NAD-binding domain HQ398_13890 PF00970 Oxidoreductase FAD-binding domain HQ398_13890 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ398_13895 PF16363 GDP-mannose 4,6 dehydratase HQ398_13900 PF01569 PAP2 superfamily HQ398_13905 PF01225 Mur ligase family, catalytic domain HQ398_13905 PF02875 Mur ligase family, glutamate ligase domain HQ398_13905 PF08245 Mur ligase middle domain HQ398_13910 PF02441 Flavoprotein HQ398_13915 PF00440 Bacterial regulatory proteins, tetR family HQ398_13920 PF00156 Phosphoribosyl transferase domain HQ398_13925 PF00005 ABC transporter HQ398_13930 PF01061 ABC-2 type transporter HQ398_13935 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ398_13940 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ398_13960 PF00375 Sodium:dicarboxylate symporter family HQ398_13970 PF02569 Pantoate-beta-alanine ligase HQ398_13975 PF02548 Ketopantoate hydroxymethyltransferase HQ398_13980 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ398_13985 PF01743 Poly A polymerase head domain HQ398_13985 PF12626 Polymerase A arginine-rich C-terminus HQ398_13985 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ398_13990 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ398_13995 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ398_14000 PF03749 Sugar fermentation stimulation protein RE domain HQ398_14000 PF17746 SfsA N-terminal OB domain HQ398_14010 PF04408 Helicase associated domain (HA2) HQ398_14010 PF08482 ATP-dependent helicase C-terminal HQ398_14010 PF00270 DEAD/DEAH box helicase HQ398_14010 PF00271 Helicase conserved C-terminal domain HQ398_14015 PF00912 Transglycosylase HQ398_14015 PF00905 Penicillin binding protein transpeptidase domain HQ398_14015 PF14814 Bifunctional transglycosylase second domain HQ398_14020 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_14025 PF00893 Small Multidrug Resistance protein HQ398_14030 PF00893 Small Multidrug Resistance protein HQ398_14040 PF11849 Domain of unknown function (DUF3369) HQ398_14045 PF00719 Inorganic pyrophosphatase HQ398_14060 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ398_14075 PF00005 ABC transporter HQ398_14095 PF00672 HAMP domain HQ398_14095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_14095 PF17200 Single Cache domain 2 HQ398_14115 PF00009 Elongation factor Tu GTP binding domain HQ398_14120 PF01507 Phosphoadenosine phosphosulfate reductase family HQ398_14125 PF14824 Sirohaem biosynthesis protein central HQ398_14125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_14125 PF10414 Sirohaem synthase dimerisation region HQ398_14130 PF01145 SPFH domain / Band 7 family HQ398_14130 PF16200 C-terminal region of band_7 HQ398_14135 PF01957 NfeD-like C-terminal, partner-binding HQ398_14140 PF00672 HAMP domain HQ398_14140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_14145 PF02445 Quinolinate synthetase A protein HQ398_14150 PF01263 Aldose 1-epimerase HQ398_14155 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ398_14155 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ398_14160 PF02446 4-alpha-glucanotransferase HQ398_14165 PF00128 Alpha amylase, catalytic domain HQ398_14165 PF02806 Alpha amylase, C-terminal all-beta domain HQ398_14165 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_14170 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_14170 PF00128 Alpha amylase, catalytic domain HQ398_14175 PF01641 SelR domain HQ398_14185 PF00293 NUDIX domain HQ398_14195 PF01037 Lrp/AsnC ligand binding domain HQ398_14205 PF07690 Major Facilitator Superfamily HQ398_14225 PF00209 Sodium:neurotransmitter symporter family HQ398_14235 PF00209 Sodium:neurotransmitter symporter family HQ398_14300 PF16331 TolA binding protein trimerisation HQ398_14300 PF13174 Tetratricopeptide repeat HQ398_14305 PF00691 OmpA family HQ398_14310 PF04052 TolB amino-terminal domain HQ398_14310 PF07676 WD40-like Beta Propeller Repeat HQ398_14320 PF02472 Biopolymer transport protein ExbD/TolR HQ398_14325 PF01618 MotA/TolQ/ExbB proton channel family HQ398_14330 PF03061 Thioesterase superfamily HQ398_14335 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ398_14340 PF08173 Membrane bound YbgT-like protein HQ398_14345 PF02322 Cytochrome bd terminal oxidase subunit II HQ398_14350 PF01654 Cytochrome bd terminal oxidase subunit I HQ398_14355 PF05491 RuvB C-terminal winged helix domain HQ398_14355 PF17864 RuvB AAA lid domain HQ398_14355 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ398_14360 PF07499 RuvA, C-terminal domain HQ398_14360 PF01330 RuvA N terminal domain HQ398_14365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_14365 PF12729 Four helix bundle sensory module for signal transduction HQ398_14365 PF00672 HAMP domain HQ398_14370 PF01810 LysE type translocator HQ398_14375 PF00196 Bacterial regulatory proteins, luxR family HQ398_14375 PF03472 Autoinducer binding domain HQ398_14380 PF00765 Autoinducer synthase HQ398_14385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_14385 PF03466 LysR substrate binding domain HQ398_14390 PF00773 RNB domain HQ398_14390 PF17876 Cold shock domain HQ398_14390 PF08206 Ribonuclease B OB domain HQ398_14395 PF00563 EAL domain HQ398_14395 PF00990 Diguanylate cyclase, GGDEF domain HQ398_14395 PF01590 GAF domain HQ398_14395 PF00360 Phytochrome region HQ398_14405 PF13419 Haloacid dehalogenase-like hydrolase HQ398_14410 PF17209 Hfq protein HQ398_14415 PF04403 Paraquat-inducible protein A HQ398_14420 PF02470 MlaD protein HQ398_14425 PF03886 ABC-type transport auxiliary lipoprotein component HQ398_14430 PF05958 tRNA (Uracil-5-)-methyltransferase HQ398_14430 PF01938 TRAM domain HQ398_14435 PF03129 Anticodon binding domain HQ398_14435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ398_14435 PF04073 Aminoacyl-tRNA editing domain HQ398_14445 PF00440 Bacterial regulatory proteins, tetR family HQ398_14455 PF00873 AcrB/AcrD/AcrF family HQ398_14460 PF00106 short chain dehydrogenase HQ398_14475 PF00378 Enoyl-CoA hydratase/isomerase HQ398_14480 PF10952 Protein of unknown function (DUF2753) HQ398_14485 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_14495 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_14505 PF01207 Dihydrouridine synthase (Dus) HQ398_14510 PF01475 Ferric uptake regulator family HQ398_14525 PF05525 Branched-chain amino acid transport protein HQ398_14530 PF05525 Branched-chain amino acid transport protein HQ398_14540 PF00270 DEAD/DEAH box helicase HQ398_14540 PF00271 Helicase conserved C-terminal domain HQ398_14545 PF13673 Acetyltransferase (GNAT) domain HQ398_14560 PF00588 SpoU rRNA Methylase family HQ398_14560 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ398_14565 PF00575 S1 RNA binding domain HQ398_14565 PF00773 RNB domain HQ398_14565 PF08206 Ribonuclease B OB domain HQ398_14565 PF08461 Ribonuclease R winged-helix domain HQ398_14565 PF17876 Cold shock domain HQ398_14570 PF00990 Diguanylate cyclase, GGDEF domain HQ398_14575 PF00691 OmpA family HQ398_14575 PF01389 OmpA-like transmembrane domain HQ398_14580 PF00657 GDSL-like Lipase/Acylhydrolase HQ398_14590 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ398_14590 PF01464 Transglycosylase SLT domain HQ398_14595 PF04362 Bacterial Fe(2+) trafficking HQ398_14600 PF14815 NUDIX domain HQ398_14600 PF10576 Iron-sulfur binding domain of endonuclease III HQ398_14600 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ398_14600 PF00633 Helix-hairpin-helix motif HQ398_14605 PF01966 HD domain HQ398_14605 PF01743 Poly A polymerase head domain HQ398_14605 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ398_14610 PF02028 BCCT, betaine/carnitine/choline family transporter HQ398_14625 PF04222 Protein of unknown function (DUF416) HQ398_14630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_14635 PF01476 LysM domain HQ398_14635 PF01551 Peptidase family M23 HQ398_14635 PF08525 Opacity-associated protein A N-terminal motif HQ398_14655 PF01297 Zinc-uptake complex component A periplasmic HQ398_14660 PF00005 ABC transporter HQ398_14665 PF00950 ABC 3 transport family HQ398_14670 PF03466 LysR substrate binding domain HQ398_14670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_14675 PF00892 EamA-like transporter family HQ398_14680 PF03167 Uracil DNA glycosylase superfamily HQ398_14685 PF00892 EamA-like transporter family HQ398_14695 PF01541 GIY-YIG catalytic domain HQ398_14710 PF04012 PspA/IM30 family HQ398_14715 PF01553 Acyltransferase HQ398_14735 PF00578 AhpC/TSA family HQ398_14740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_14740 PF03466 LysR substrate binding domain HQ398_14745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ398_14745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ398_14755 PF00684 DnaJ central domain HQ398_14755 PF00226 DnaJ domain HQ398_14755 PF01556 DnaJ C terminal domain HQ398_14775 PF00854 POT family HQ398_14785 PF02600 Disulfide bond formation protein DsbB HQ398_14795 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ398_14795 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ398_14800 PF01751 Toprim domain HQ398_14800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_14800 PF00986 DNA gyrase B subunit, carboxyl terminus HQ398_14800 PF00204 DNA gyrase B HQ398_14805 PF04632 Fusaric acid resistance protein family HQ398_14810 PF00529 HlyD membrane-fusion protein of T1SS HQ398_14810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_14815 PF07869 Protein of unknown function (DUF1656) HQ398_14820 PF00293 NUDIX domain HQ398_14825 PF05728 Uncharacterised protein family (UPF0227) HQ398_14830 PF00149 Calcineurin-like phosphoesterase HQ398_14835 PF06853 Protein of unknown function (DUF1249) HQ398_14840 PF00293 NUDIX domain HQ398_14845 PF02321 Outer membrane efflux protein HQ398_14850 PF00294 pfkB family carbohydrate kinase HQ398_14850 PF01467 Cytidylyltransferase-like HQ398_14855 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ398_14860 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_14860 PF02378 Phosphotransferase system, EIIC HQ398_14860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ398_14865 PF01232 Mannitol dehydrogenase Rossmann domain HQ398_14865 PF08125 Mannitol dehydrogenase C-terminal domain HQ398_14870 PF05068 Mannitol repressor HQ398_14890 PF01544 CorA-like Mg2+ transporter protein HQ398_14895 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ398_14910 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ398_14915 PF07670 Nucleoside recognition HQ398_14915 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_14915 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_14920 PF00271 Helicase conserved C-terminal domain HQ398_14920 PF00270 DEAD/DEAH box helicase HQ398_14920 PF03880 DbpA RNA binding domain HQ398_14940 PF01040 UbiA prenyltransferase family HQ398_14945 PF00425 chorismate binding enzyme HQ398_14955 PF12697 Alpha/beta hydrolase family HQ398_14960 PF00378 Enoyl-CoA hydratase/isomerase HQ398_14965 PF13378 Enolase C-terminal domain-like HQ398_14970 PF00501 AMP-binding enzyme HQ398_14975 PF01752 Collagenase HQ398_14975 PF08453 Peptidase family M9 N-terminal HQ398_14980 PF02698 DUF218 domain HQ398_14985 PF00072 Response regulator receiver domain HQ398_14985 PF01584 CheW-like domain HQ398_14990 PF00106 short chain dehydrogenase HQ398_14995 PF13718 GNAT acetyltransferase 2 HQ398_14995 PF08351 Domain of unknown function (DUF1726) HQ398_14995 PF05127 Helicase HQ398_14995 PF17176 tRNA-binding domain HQ398_15010 PF00210 Ferritin-like domain HQ398_15015 PF02142 MGS-like domain HQ398_15020 PF00465 Iron-containing alcohol dehydrogenase HQ398_15030 PF03577 Peptidase family C69 HQ398_15035 PF00106 short chain dehydrogenase HQ398_15055 PF02308 MgtC family HQ398_15060 PF16657 Maltogenic Amylase, C-terminal domain HQ398_15060 PF00128 Alpha amylase, catalytic domain HQ398_15060 PF02903 Alpha amylase, N-terminal ig-like domain HQ398_15075 PF00884 Sulfatase HQ398_15080 PF01037 Lrp/AsnC ligand binding domain HQ398_15090 PF04204 Homoserine O-succinyltransferase HQ398_15095 PF01966 HD domain HQ398_15095 PF00013 KH domain HQ398_15095 PF12072 Domain of unknown function (DUF3552) HQ398_15100 PF00994 Probable molybdopterin binding domain HQ398_15100 PF02464 Competence-damaged protein HQ398_15120 PF04363 Protein of unknown function (DUF496) HQ398_15150 PF18337 RapA N-terminal Tudor like domain HQ398_15150 PF18339 RapA N-terminal Tudor like domain 1 HQ398_15150 PF00176 SNF2 family N-terminal domain HQ398_15150 PF12137 RNA polymerase recycling family C-terminal HQ398_15150 PF00271 Helicase conserved C-terminal domain HQ398_15155 PF00849 RNA pseudouridylate synthase HQ398_15165 PF12464 Maltose acetyltransferase HQ398_15165 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_15170 PF11941 Domain of unknown function (DUF3459) HQ398_15170 PF00128 Alpha amylase, catalytic domain HQ398_15175 PF02378 Phosphotransferase system, EIIC HQ398_15175 PF00367 phosphotransferase system, EIIB HQ398_15180 PF00356 Bacterial regulatory proteins, lacI family HQ398_15195 PF17763 Glutaminase/Asparaginase C-terminal domain HQ398_15195 PF00710 Asparaginase, N-terminal HQ398_15200 PF01595 Cyclin M transmembrane N-terminal domain HQ398_15200 PF03471 Transporter associated domain HQ398_15200 PF00571 CBS domain HQ398_15205 PF09335 SNARE associated Golgi protein HQ398_15210 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_15245 PF02599 Global regulator protein family HQ398_15250 PF01842 ACT domain HQ398_15250 PF00696 Amino acid kinase family HQ398_15250 PF13840 ACT domain HQ398_15255 PF01411 tRNA synthetases class II (A) HQ398_15255 PF02272 DHHA1 domain HQ398_15255 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ398_15260 PF02631 RecX family HQ398_15265 PF00154 recA bacterial DNA recombination protein HQ398_15270 PF02464 Competence-damaged protein HQ398_15275 PF01624 MutS domain I HQ398_15275 PF05188 MutS domain II HQ398_15275 PF05192 MutS domain III HQ398_15275 PF05190 MutS family domain IV HQ398_15275 PF00488 MutS domain V HQ398_15280 PF01734 Patatin-like phospholipase HQ398_15290 PF04172 LrgB-like family HQ398_15295 PF03788 LrgA family HQ398_15300 PF00155 Aminotransferase class I and II HQ398_15300 PF00392 Bacterial regulatory proteins, gntR family HQ398_15315 PF03466 LysR substrate binding domain HQ398_15315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_15330 PF04073 Aminoacyl-tRNA editing domain HQ398_15340 PF00311 Phosphoenolpyruvate carboxylase HQ398_15345 PF01546 Peptidase family M20/M25/M40 HQ398_15345 PF07687 Peptidase dimerisation domain HQ398_15350 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ398_15350 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ398_15355 PF00696 Amino acid kinase family HQ398_15360 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_15360 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_15365 PF00764 Arginosuccinate synthase HQ398_15370 PF14698 Argininosuccinate lyase C-terminal HQ398_15370 PF00206 Lyase HQ398_15385 PF07670 Nucleoside recognition HQ398_15410 PF02660 Glycerol-3-phosphate acyltransferase HQ398_15415 PF02152 Dihydroneopterin aldolase HQ398_15420 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ398_15430 PF07690 Major Facilitator Superfamily HQ398_15435 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ398_15435 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ398_15445 PF12792 CSS motif domain associated with EAL HQ398_15445 PF00563 EAL domain HQ398_15450 PF06434 Aconitate hydratase 2 N-terminus HQ398_15450 PF11791 Aconitate B N-terminal domain HQ398_15450 PF00330 Aconitase family (aconitate hydratase) HQ398_15455 PF01734 Patatin-like phospholipase HQ398_15460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_15460 PF00672 HAMP domain HQ398_15460 PF12729 Four helix bundle sensory module for signal transduction HQ398_15470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_15470 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_15475 PF02817 e3 binding domain HQ398_15475 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ398_15475 PF00364 Biotin-requiring enzyme HQ398_15480 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ398_15480 PF00456 Transketolase, thiamine diphosphate binding domain HQ398_15485 PF07729 FCD domain HQ398_15485 PF00392 Bacterial regulatory proteins, gntR family HQ398_15490 PF01510 N-acetylmuramoyl-L-alanine amidase HQ398_15500 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ398_15500 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ398_15505 PF07963 Prokaryotic N-terminal methylation motif HQ398_15510 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ398_15510 PF00437 Type II/IV secretion system protein HQ398_15515 PF00482 Type II secretion system (T2SS), protein F HQ398_15525 PF01121 Dephospho-CoA kinase HQ398_15530 PF07072 Cell division protein HQ398_15535 PF03884 DNA gyrase inhibitor YacG HQ398_15540 PF00293 NUDIX domain HQ398_15545 PF01043 SecA preprotein cross-linking domain HQ398_15545 PF07517 SecA DEAD-like domain HQ398_15545 PF07516 SecA Wing and Scaffold domain HQ398_15545 PF02810 SEC-C motif HQ398_15555 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ398_15560 PF12327 FtsZ family, C-terminal domain HQ398_15560 PF00091 Tubulin/FtsZ family, GTPase domain HQ398_15565 PF02491 SHS2 domain inserted in FTSA HQ398_15570 PF03799 Cell division protein FtsQ HQ398_15570 PF08478 POTRA domain, FtsQ-type HQ398_15575 PF01225 Mur ligase family, catalytic domain HQ398_15575 PF02875 Mur ligase family, glutamate ligase domain HQ398_15575 PF08245 Mur ligase middle domain HQ398_15580 PF04101 Glycosyltransferase family 28 C-terminal domain HQ398_15580 PF03033 Glycosyltransferase family 28 N-terminal domain HQ398_15585 PF01098 Cell cycle protein HQ398_15590 PF08245 Mur ligase middle domain HQ398_15590 PF02875 Mur ligase family, glutamate ligase domain HQ398_15595 PF00953 Glycosyl transferase family 4 HQ398_15595 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ398_15600 PF01225 Mur ligase family, catalytic domain HQ398_15600 PF02875 Mur ligase family, glutamate ligase domain HQ398_15600 PF08245 Mur ligase middle domain HQ398_15605 PF01225 Mur ligase family, catalytic domain HQ398_15605 PF02875 Mur ligase family, glutamate ligase domain HQ398_15605 PF08245 Mur ligase middle domain HQ398_15610 PF03717 Penicillin-binding Protein dimerisation domain HQ398_15610 PF00905 Penicillin binding protein transpeptidase domain HQ398_15615 PF04999 Cell division protein FtsL HQ398_15620 PF01795 MraW methylase family HQ398_15625 PF02381 MraZ protein, putative antitoxin-like HQ398_15635 PF01476 LysM domain HQ398_15635 PF01464 Transglycosylase SLT domain HQ398_15650 PF01618 MotA/TolQ/ExbB proton channel family HQ398_15655 PF04545 Sigma-70, region 4 HQ398_15655 PF04542 Sigma-70 region 2 HQ398_15675 PF02561 Flagellar protein FliS HQ398_15680 PF07196 Flagellin hook IN motif HQ398_15680 PF02465 Flagellar hook-associated protein 2 N-terminus HQ398_15680 PF07195 Flagellar hook-associated protein 2 C-terminus HQ398_15685 PF00700 Bacterial flagellin C-terminal helical region HQ398_15685 PF00669 Bacterial flagellin N-terminal helical region HQ398_15690 PF00700 Bacterial flagellin C-terminal helical region HQ398_15690 PF00669 Bacterial flagellin N-terminal helical region HQ398_15705 PF00669 Bacterial flagellin N-terminal helical region HQ398_15710 PF00460 Flagella basal body rod protein HQ398_15710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_15720 PF02119 Flagellar P-ring protein HQ398_15725 PF02107 Flagellar L-ring protein HQ398_15730 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_15730 PF00460 Flagella basal body rod protein HQ398_15735 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_15735 PF00460 Flagella basal body rod protein HQ398_15740 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_15740 PF07559 Flagellar basal body protein FlaE HQ398_15740 PF00460 Flagella basal body rod protein HQ398_15745 PF03963 Flagellar hook capping protein - N-terminal region HQ398_15745 PF13860 FlgD Ig-like domain HQ398_15745 PF13861 FlgD Tudor-like domain HQ398_15750 PF00460 Flagella basal body rod protein HQ398_15750 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ398_15755 PF00460 Flagella basal body rod protein HQ398_15765 PF04316 Anti-sigma-28 factor, FlgM HQ398_15790 PF01706 FliG C-terminal domain HQ398_15790 PF14841 FliG middle domain HQ398_15790 PF14842 FliG N-terminal domain HQ398_15795 PF01514 Secretory protein of YscJ/FliF family HQ398_15795 PF08345 Flagellar M-ring protein C-terminal HQ398_15800 PF02049 Flagellar hook-basal body complex protein FliE HQ398_15810 PF00771 FHIPEP family HQ398_15815 PF01312 FlhB HrpN YscU SpaS Family HQ398_15820 PF01311 Bacterial export proteins, family 1 HQ398_15825 PF01313 Bacterial export proteins, family 3 HQ398_15830 PF00813 FliP family HQ398_15835 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ398_15850 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_15855 PF04348 LppC putative lipoprotein HQ398_15860 PF02021 Uncharacterised protein family UPF0102 HQ398_15865 PF13580 SIS domain HQ398_15875 PF04386 Stringent starvation protein B HQ398_15880 PF02798 Glutathione S-transferase, N-terminal domain HQ398_15880 PF00043 Glutathione S-transferase, C-terminal domain HQ398_15885 PF02167 Cytochrome C1 family HQ398_15890 PF00032 Cytochrome b(C-terminal)/b6/petD HQ398_15890 PF00033 Cytochrome b/b6/petB HQ398_15900 PF00380 Ribosomal protein S9/S16 HQ398_15905 PF00572 Ribosomal protein L13 HQ398_15910 PF03969 AFG1-like ATPase HQ398_15920 PF13180 PDZ domain HQ398_15920 PF00595 PDZ domain HQ398_15925 PF13180 PDZ domain HQ398_15955 PF01979 Amidohydrolase family HQ398_15960 PF03841 L-seryl-tRNA selenium transferase HQ398_15965 PF07071 KDGP aldolase HQ398_15970 PF05043 Mga helix-turn-helix domain HQ398_15970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_15970 PF00874 PRD domain HQ398_15970 PF08279 HTH domain HQ398_15975 PF00381 PTS HPr component phosphorylation site HQ398_15980 PF03668 P-loop ATPase protein family HQ398_15985 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_15990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ398_15995 PF04552 Sigma-54, DNA binding domain HQ398_15995 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ398_15995 PF04963 Sigma-54 factor, core binding domain HQ398_16000 PF00005 ABC transporter HQ398_16000 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ398_16005 PF03968 OstA-like protein HQ398_16020 PF00571 CBS domain HQ398_16020 PF01380 SIS domain HQ398_16025 PF00005 ABC transporter HQ398_16030 PF02405 Permease MlaE HQ398_16035 PF02470 MlaD protein HQ398_16040 PF05494 MlaC protein HQ398_16050 PF01722 BolA-like protein HQ398_16055 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ398_16060 PF01523 Putative modulator of DNA gyrase HQ398_16065 PF04751 Protein of unknown function (DUF615) HQ398_16070 PF07722 Peptidase C26 HQ398_16080 PF07885 Ion channel HQ398_16080 PF00027 Cyclic nucleotide-binding domain HQ398_16085 PF13419 Haloacid dehalogenase-like hydrolase HQ398_16090 PF02899 Phage integrase, N-terminal SAM-like domain HQ398_16090 PF00589 Phage integrase family HQ398_16100 PF01678 Diaminopimelate epimerase HQ398_16105 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ398_16105 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ398_16115 PF01491 Frataxin-like domain HQ398_16120 PF02230 Phospholipase/Carboxylesterase HQ398_16125 PF12633 Adenylate cyclase NT domain HQ398_16125 PF01295 Adenylate cyclase, class-I HQ398_16130 PF03900 Porphobilinogen deaminase, C-terminal domain HQ398_16130 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ398_16135 PF02602 Uroporphyrinogen-III synthase HemD HQ398_16140 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ398_16150 PF03692 Putative zinc- or iron-chelating domain HQ398_16155 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ398_16175 PF13520 Amino acid permease HQ398_16180 PF00768 D-alanyl-D-alanine carboxypeptidase HQ398_16190 PF07715 TonB-dependent Receptor Plug Domain HQ398_16190 PF00593 TonB dependent receptor HQ398_16210 PF00717 Peptidase S24-like HQ398_16210 PF01381 Helix-turn-helix HQ398_16220 PF06892 Phage regulatory protein CII (CP76) HQ398_16405 PF07484 Phage Tail Collar Domain HQ398_16410 PF02413 Caudovirales tail fibre assembly protein, lambda gpK HQ398_16445 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ398_16450 PF00883 Cytosol aminopeptidase family, catalytic domain HQ398_16450 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ398_16455 PF04364 DNA polymerase III chi subunit, HolC HQ398_16460 PF08264 Anticodon-binding domain of tRNA HQ398_16460 PF00133 tRNA synthetases class I (I, L, M and V) HQ398_16460 PF10458 Valyl tRNA synthetase tRNA binding arm HQ398_16480 PF00583 Acetyltransferase (GNAT) family HQ398_16500 PF00196 Bacterial regulatory proteins, luxR family HQ398_16505 PF00579 tRNA synthetases class I (W and Y) HQ398_16505 PF01479 S4 domain HQ398_16510 PF00561 alpha/beta hydrolase fold HQ398_16515 PF03280 Proteobacterial lipase chaperone protein HQ398_16530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ398_16530 PF12793 Sugar transport-related sRNA regulator N-term HQ398_16540 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_16560 PF00990 Diguanylate cyclase, GGDEF domain HQ398_16570 PF00005 ABC transporter HQ398_16570 PF08402 TOBE domain HQ398_16580 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_16595 PF07702 UTRA domain HQ398_16595 PF00392 Bacterial regulatory proteins, gntR family HQ398_16605 PF03606 C4-dicarboxylate anaerobic carrier HQ398_16620 PF00990 Diguanylate cyclase, GGDEF domain HQ398_16635 PF12705 PD-(D/E)XK nuclease superfamily HQ398_16635 PF00580 UvrD/REP helicase N-terminal domain HQ398_16635 PF13361 UvrD-like helicase C-terminal domain HQ398_16645 PF07681 DoxX HQ398_16650 PF02678 Pirin HQ398_16650 PF17954 Quercetinase C-terminal cupin domain HQ398_16660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_16660 PF03466 LysR substrate binding domain HQ398_16670 PF00486 Transcriptional regulatory protein, C terminal HQ398_16670 PF00072 Response regulator receiver domain HQ398_16675 PF00512 His Kinase A (phospho-acceptor) domain HQ398_16675 PF00672 HAMP domain HQ398_16675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_16685 PF07715 TonB-dependent Receptor Plug Domain HQ398_16685 PF00593 TonB dependent receptor HQ398_16725 PF01196 Ribosomal protein L17 HQ398_16730 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ398_16730 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ398_16730 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ398_16735 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ398_16735 PF01479 S4 domain HQ398_16740 PF00411 Ribosomal protein S11 HQ398_16745 PF00416 Ribosomal protein S13/S18 HQ398_16750 PF00444 Ribosomal protein L36 HQ398_16755 PF00344 SecY translocase HQ398_16760 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ398_16765 PF00327 Ribosomal protein L30p/L7e HQ398_16770 PF00333 Ribosomal protein S5, N-terminal domain HQ398_16770 PF03719 Ribosomal protein S5, C-terminal domain HQ398_16775 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ398_16780 PF00347 Ribosomal protein L6 HQ398_16785 PF00410 Ribosomal protein S8 HQ398_16790 PF00253 Ribosomal protein S14p/S29e HQ398_16795 PF00281 Ribosomal protein L5 HQ398_16795 PF00673 ribosomal L5P family C-terminus HQ398_16800 PF00467 KOW motif HQ398_16800 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ398_16805 PF00238 Ribosomal protein L14p/L23e HQ398_16810 PF00366 Ribosomal protein S17 HQ398_16815 PF00831 Ribosomal L29 protein HQ398_16820 PF00252 Ribosomal protein L16p/L10e HQ398_16825 PF00189 Ribosomal protein S3, C-terminal domain HQ398_16825 PF07650 KH domain HQ398_16830 PF00237 Ribosomal protein L22p/L17e HQ398_16835 PF00203 Ribosomal protein S19 HQ398_16840 PF03947 Ribosomal Proteins L2, C-terminal domain HQ398_16840 PF00181 Ribosomal Proteins L2, RNA binding domain HQ398_16845 PF00276 Ribosomal protein L23 HQ398_16850 PF00573 Ribosomal protein L4/L1 family HQ398_16855 PF00297 Ribosomal protein L3 HQ398_16860 PF00338 Ribosomal protein S10p/S20e HQ398_16870 PF00512 His Kinase A (phospho-acceptor) domain HQ398_16870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_16870 PF00672 HAMP domain HQ398_16875 PF00486 Transcriptional regulatory protein, C terminal HQ398_16875 PF00072 Response regulator receiver domain HQ398_16880 PF03449 Transcription elongation factor, N-terminal HQ398_16880 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ398_16885 PF16921 Tex protein YqgF-like domain HQ398_16885 PF09371 Tex-like protein N-terminal domain HQ398_16885 PF00575 S1 RNA binding domain HQ398_16885 PF17674 HHH domain HQ398_16905 PF00561 alpha/beta hydrolase fold HQ398_16910 PF00156 Phosphoribosyl transferase domain HQ398_16915 PF01106 NifU-like domain HQ398_16915 PF01521 Iron-sulphur cluster biosynthesis HQ398_16920 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ398_16920 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ398_16925 PF02556 Preprotein translocase subunit SecB HQ398_16930 PF00581 Rhodanese-like domain HQ398_16935 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ398_16935 PF01676 Metalloenzyme superfamily HQ398_16940 PF01551 Peptidase family M23 HQ398_16965 PF01081 KDPG and KHG aldolase HQ398_16970 PF00920 Dehydratase family HQ398_16975 PF01202 Shikimate kinase HQ398_16980 PF02447 GntP family permease HQ398_16985 PF13091 PLD-like domain HQ398_16990 PF00270 DEAD/DEAH box helicase HQ398_16990 PF00271 Helicase conserved C-terminal domain HQ398_16990 PF17191 RecG wedge domain HQ398_17000 PF00583 Acetyltransferase (GNAT) family HQ398_17000 PF09500 Putative thioesterase (yiiD_Cterm) HQ398_17005 PF17284 Spermidine synthase tetramerisation domain HQ398_17010 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ398_17020 PF01757 Acyltransferase family HQ398_17025 PF01609 Transposase DDE domain HQ398_17030 PF01609 Transposase DDE domain HQ398_17040 PF03631 Virulence factor BrkB HQ398_17050 PF03222 Tryptophan/tyrosine permease family HQ398_17055 PF11066 Protein of unknown function (DUF2867) HQ398_17055 PF13460 NAD(P)H-binding HQ398_17065 PF17764 3′ DNA-binding domain (3′BD) HQ398_17065 PF18074 Primosomal protein N C-terminal domain HQ398_17065 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ398_17065 PF00270 DEAD/DEAH box helicase HQ398_17065 PF00271 Helicase conserved C-terminal domain HQ398_17070 PF01197 Ribosomal protein L31 HQ398_17075 PF06206 CpeT/CpcT family (DUF1001) HQ398_17080 PF00672 HAMP domain HQ398_17080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_17085 PF03737 Aldolase/RraA HQ398_17090 PF02592 Putative vitamin uptake transporter HQ398_17100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ398_17105 PF00034 Cytochrome c HQ398_17110 PF00270 DEAD/DEAH box helicase HQ398_17110 PF00271 Helicase conserved C-terminal domain HQ398_17110 PF00570 HRDC domain HQ398_17110 PF16124 RecQ zinc-binding HQ398_17110 PF09382 RQC domain HQ398_17115 PF03061 Thioesterase superfamily HQ398_17130 PF03475 3-alpha domain HQ398_17130 PF03473 MOSC domain HQ398_17135 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_17140 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_17145 PF00005 ABC transporter HQ398_17145 PF08402 TOBE domain HQ398_17150 PF13416 Bacterial extracellular solute-binding protein HQ398_17155 PF13416 Bacterial extracellular solute-binding protein HQ398_17160 PF00202 Aminotransferase class-III HQ398_17165 PF00120 Glutamine synthetase, catalytic domain HQ398_17170 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ398_17185 PF05981 CreA protein HQ398_17190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ398_17190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ398_17195 PF00012 Hsp70 protein HQ398_17210 PF00128 Alpha amylase, catalytic domain HQ398_17210 PF02903 Alpha amylase, N-terminal ig-like domain HQ398_17225 PF05958 tRNA (Uracil-5-)-methyltransferase HQ398_17230 PF00672 HAMP domain HQ398_17230 PF02743 Cache domain HQ398_17230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_17235 PF02653 Branched-chain amino acid transport system / permease component HQ398_17240 PF00005 ABC transporter HQ398_17245 PF13407 Periplasmic binding protein domain HQ398_17250 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ398_17250 PF16353 Domain of unknown function(DUF4981) HQ398_17250 PF02929 Beta galactosidase small chain HQ398_17250 PF00703 Glycosyl hydrolases family 2 HQ398_17250 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ398_17255 PF00356 Bacterial regulatory proteins, lacI family HQ398_17260 PF16363 GDP-mannose 4,6 dehydratase HQ398_17265 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ398_17265 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ398_17270 PF00288 GHMP kinases N terminal domain HQ398_17270 PF10509 Galactokinase galactose-binding signature HQ398_17270 PF08544 GHMP kinases C terminal HQ398_17275 PF01263 Aldose 1-epimerase HQ398_17280 PF02673 Bacitracin resistance protein BacA HQ398_17290 PF04542 Sigma-70 region 2 HQ398_17290 PF04545 Sigma-70, region 4 HQ398_17300 PF03485 Arginyl tRNA synthetase N terminal domain HQ398_17300 PF05746 DALR anticodon binding domain HQ398_17300 PF00750 tRNA synthetases class I (R) HQ398_17310 PF00227 Proteasome subunit HQ398_17315 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_17315 PF07724 AAA domain (Cdc48 subfamily) HQ398_17315 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_17325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_17345 PF04324 BFD-like [2Fe-2S] binding domain HQ398_17345 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ398_17345 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ398_17345 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_17345 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ398_17350 PF13806 Rieske-like [2Fe-2S] domain HQ398_17355 PF01226 Formate/nitrite transporter HQ398_17360 PF10414 Sirohaem synthase dimerisation region HQ398_17360 PF14824 Sirohaem biosynthesis protein central HQ398_17360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ398_17365 PF03543 Yersinia/Haemophilus virulence surface antigen HQ398_17370 PF05932 Tir chaperone protein (CesT) family HQ398_17375 PF00571 CBS domain HQ398_17375 PF03448 MgtE intracellular N domain HQ398_17375 PF01769 Divalent cation transporter HQ398_17380 PF02653 Branched-chain amino acid transport system / permease component HQ398_17385 PF02653 Branched-chain amino acid transport system / permease component HQ398_17390 PF00005 ABC transporter HQ398_17395 PF02608 ABC transporter substrate-binding protein PnrA-like HQ398_17400 PF13361 UvrD-like helicase C-terminal domain HQ398_17400 PF00580 UvrD/REP helicase N-terminal domain HQ398_17425 PF14001 YdfZ protein HQ398_17455 PF01810 LysE type translocator HQ398_17460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HQ398_17460 PF12833 Helix-turn-helix domain HQ398_17480 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ398_17500 PF01370 NAD dependent epimerase/dehydratase family HQ398_17505 PF08360 QacR-like protein, C-terminal region HQ398_17505 PF00440 Bacterial regulatory proteins, tetR family HQ398_17510 PF00155 Aminotransferase class I and II HQ398_17515 PF00107 Zinc-binding dehydrogenase HQ398_17515 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_17520 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ398_17530 PF00580 UvrD/REP helicase N-terminal domain HQ398_17530 PF13361 UvrD-like helicase C-terminal domain HQ398_17535 PF00266 Aminotransferase class-V HQ398_17540 PF02657 Fe-S metabolism associated domain HQ398_17545 PF00899 ThiF family HQ398_17590 PF03466 LysR substrate binding domain HQ398_17590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_17605 PF00731 AIR carboxylase HQ398_17610 PF02222 ATP-grasp domain HQ398_17610 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ398_17615 PF07690 Major Facilitator Superfamily HQ398_17620 PF04397 LytTr DNA-binding domain HQ398_17620 PF00072 Response regulator receiver domain HQ398_17625 PF07694 5TMR of 5TMR-LYT HQ398_17625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_17625 PF06580 Histidine kinase HQ398_17635 PF00210 Ferritin-like domain HQ398_17640 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ398_17640 PF07055 Enoyl reductase FAD binding domain HQ398_17640 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ398_17645 PF00582 Universal stress protein family HQ398_17650 PF00579 tRNA synthetases class I (W and Y) HQ398_17655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_17655 PF03466 LysR substrate binding domain HQ398_17675 PF00892 EamA-like transporter family HQ398_17690 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_17695 PF00625 Guanylate kinase HQ398_17700 PF01192 RNA polymerase Rpb6 HQ398_17705 PF13291 ACT domain HQ398_17705 PF04607 Region found in RelA / SpoT proteins HQ398_17705 PF02824 TGS domain HQ398_17710 PF00588 SpoU rRNA Methylase family HQ398_17710 PF12105 SpoU, rRNA methylase, C-terminal HQ398_17715 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_17760 PF00440 Bacterial regulatory proteins, tetR family HQ398_17765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ398_17770 PF00873 AcrB/AcrD/AcrF family HQ398_17775 PF00512 His Kinase A (phospho-acceptor) domain HQ398_17775 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_17780 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_17780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_17785 PF03814 Potassium-transporting ATPase A subunit HQ398_17795 PF02669 K+-transporting ATPase, c chain HQ398_17800 PF00512 His Kinase A (phospho-acceptor) domain HQ398_17800 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ398_17800 PF13492 GAF domain HQ398_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_17800 PF13493 Domain of unknown function (DUF4118) HQ398_17805 PF00072 Response regulator receiver domain HQ398_17805 PF00486 Transcriptional regulatory protein, C terminal HQ398_17810 PF07690 Major Facilitator Superfamily HQ398_17820 PF00155 Aminotransferase class I and II HQ398_17825 PF00011 Hsp20/alpha crystallin family HQ398_17830 PF00011 Hsp20/alpha crystallin family HQ398_17835 PF12706 Beta-lactamase superfamily domain HQ398_17840 PF01965 DJ-1/PfpI family HQ398_17840 PF12833 Helix-turn-helix domain HQ398_17845 PF08279 HTH domain HQ398_17845 PF13280 WYL domain HQ398_17855 PF01751 Toprim domain HQ398_17855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_17855 PF18053 DNA gyrase B subunit insert domain HQ398_17855 PF00204 DNA gyrase B HQ398_17855 PF00986 DNA gyrase B subunit, carboxyl terminus HQ398_17865 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ398_17865 PF02767 DNA polymerase III beta subunit, central domain HQ398_17865 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ398_17870 PF08299 Bacterial dnaA protein helix-turn-helix HQ398_17870 PF00308 Bacterial dnaA protein HQ398_17870 PF11638 DnaA N-terminal domain HQ398_17875 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_17880 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_17885 PF00005 ABC transporter HQ398_17890 PF00468 Ribosomal protein L34 HQ398_17895 PF00825 Ribonuclease P HQ398_17900 PF01809 Putative membrane protein insertion efficiency factor HQ398_17905 PF02096 60Kd inner membrane protein HQ398_17905 PF14849 YidC periplasmic domain HQ398_17910 PF01926 50S ribosome-binding GTPase HQ398_17910 PF12631 MnmE helical domain HQ398_17910 PF10396 GTP-binding protein TrmE N-terminus HQ398_17915 PF00258 Flavodoxin HQ398_17920 PF01134 Glucose inhibited division protein A HQ398_17920 PF13932 GidA associated domain HQ398_17925 PF02527 rRNA small subunit methyltransferase G HQ398_17930 PF13614 AAA domain HQ398_17935 PF17762 HTH domain found in ParB protein HQ398_17935 PF02195 ParB-like nuclease domain HQ398_17945 PF00119 ATP synthase A chain HQ398_17950 PF00137 ATP synthase subunit C HQ398_17955 PF00430 ATP synthase B/B' CF(0) HQ398_17960 PF00213 ATP synthase delta (OSCP) subunit HQ398_17965 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_17965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_17965 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ398_17970 PF00231 ATP synthase HQ398_17975 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_17975 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ398_17980 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ398_17980 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ398_17985 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_17985 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_17985 PF12804 MobA-like NTP transferase domain HQ398_17990 PF02397 Bacterial sugar transferase HQ398_18005 PF13614 AAA domain HQ398_18005 PF13807 G-rich domain on putative tyrosine kinase HQ398_18005 PF02706 Chain length determinant protein HQ398_18035 PF13439 Glycosyltransferase Family 4 HQ398_18035 PF00534 Glycosyl transferases group 1 HQ398_18050 PF06123 Inner membrane protein CreD HQ398_18060 PF00905 Penicillin binding protein transpeptidase domain HQ398_18070 PF00072 Response regulator receiver domain HQ398_18070 PF00486 Transcriptional regulatory protein, C terminal HQ398_18075 PF00455 DeoR C terminal sensor domain HQ398_18075 PF08220 DeoR-like helix-turn-helix domain HQ398_18080 PF01380 SIS domain HQ398_18085 PF03472 Autoinducer binding domain HQ398_18085 PF00196 Bacterial regulatory proteins, luxR family HQ398_18095 PF01618 MotA/TolQ/ExbB proton channel family HQ398_18100 PF01618 MotA/TolQ/ExbB proton channel family HQ398_18105 PF02472 Biopolymer transport protein ExbD/TolR HQ398_18110 PF03544 Gram-negative bacterial TonB protein C-terminal HQ398_18145 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HQ398_18150 PF07969 Amidohydrolase family HQ398_18155 PF01209 ubiE/COQ5 methyltransferase family HQ398_18160 PF02036 SCP-2 sterol transfer family HQ398_18165 PF03109 ABC1 family HQ398_18170 PF02416 mttA/Hcf106 family HQ398_18175 PF02416 mttA/Hcf106 family HQ398_18180 PF00902 Sec-independent protein translocase protein (TatC) HQ398_18185 PF01026 TatD related DNase HQ398_18190 PF00490 Delta-aminolevulinic acid dehydratase HQ398_18195 PF00704 Glycosyl hydrolases family 18 HQ398_18200 PF01432 Peptidase family M3 HQ398_18205 PF00990 Diguanylate cyclase, GGDEF domain HQ398_18205 PF03707 Bacterial signalling protein N terminal repeat HQ398_18205 PF00563 EAL domain HQ398_18210 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_18215 PF04445 Putative SAM-dependent methyltransferase HQ398_18225 PF02541 Ppx/GppA phosphatase family HQ398_18230 PF00270 DEAD/DEAH box helicase HQ398_18230 PF00271 Helicase conserved C-terminal domain HQ398_18235 PF00085 Thioredoxin HQ398_18240 PF07497 Rho termination factor, RNA-binding domain HQ398_18240 PF07498 Rho termination factor, N-terminal domain HQ398_18240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ398_18250 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ398_18265 PF04380 Membrane fusogenic activity HQ398_18270 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ398_18270 PF01694 Rhomboid family HQ398_18275 PF00581 Rhodanese-like domain HQ398_18280 PF00005 ABC transporter HQ398_18285 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ398_18285 PF00005 ABC transporter HQ398_18290 PF11862 Domain of unknown function (DUF3382) HQ398_18290 PF02653 Branched-chain amino acid transport system / permease component HQ398_18295 PF02653 Branched-chain amino acid transport system / permease component HQ398_18300 PF13458 Periplasmic binding protein HQ398_18305 PF00356 Bacterial regulatory proteins, lacI family HQ398_18315 PF02743 Cache domain HQ398_18315 PF00672 HAMP domain HQ398_18315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_18320 PF01590 GAF domain HQ398_18320 PF00990 Diguanylate cyclase, GGDEF domain HQ398_18320 PF00360 Phytochrome region HQ398_18320 PF00563 EAL domain HQ398_18330 PF05746 DALR anticodon binding domain HQ398_18330 PF02092 Glycyl-tRNA synthetase beta subunit HQ398_18335 PF02091 Glycyl-tRNA synthetase alpha subunit HQ398_18340 PF03352 Methyladenine glycosylase HQ398_18345 PF17200 Single Cache domain 2 HQ398_18345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_18345 PF00672 HAMP domain HQ398_18350 PF00691 OmpA family HQ398_18350 PF13488 Glycine zipper HQ398_18355 PF01042 Endoribonuclease L-PSP HQ398_18360 PF01206 Sulfurtransferase TusA HQ398_18370 PF01547 Bacterial extracellular solute-binding protein HQ398_18375 PF00672 HAMP domain HQ398_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_18375 PF00512 His Kinase A (phospho-acceptor) domain HQ398_18380 PF00486 Transcriptional regulatory protein, C terminal HQ398_18380 PF00072 Response regulator receiver domain HQ398_18385 PF02803 Thiolase, C-terminal domain HQ398_18385 PF00108 Thiolase, N-terminal domain HQ398_18390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ398_18390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ398_18390 PF00378 Enoyl-CoA hydratase/isomerase HQ398_18395 PF00501 AMP-binding enzyme HQ398_18395 PF13193 AMP-binding enzyme C-terminal domain HQ398_18400 PF00557 Metallopeptidase family M24 HQ398_18405 PF09186 Domain of unknown function (DUF1949) HQ398_18405 PF01205 Uncharacterized protein family UPF0029 HQ398_18410 PF02386 Cation transport protein HQ398_18415 PF12724 Flavodoxin domain HQ398_18445 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ398_18445 PF00583 Acetyltransferase (GNAT) family HQ398_18445 PF13380 CoA binding domain HQ398_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_18460 PF03466 LysR substrate binding domain HQ398_18465 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ398_18465 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ398_18470 PF00342 Phosphoglucose isomerase HQ398_18475 PF00924 Mechanosensitive ion channel HQ398_18475 PF05552 Conserved TM helix HQ398_18480 PF00440 Bacterial regulatory proteins, tetR family HQ398_18485 PF00692 dUTPase HQ398_18490 PF04127 DNA / pantothenate metabolism flavoprotein HQ398_18490 PF02441 Flavoprotein HQ398_18495 PF04002 RadC-like JAB domain HQ398_18500 PF00830 Ribosomal L28 family HQ398_18505 PF00471 Ribosomal protein L33 HQ398_18515 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ398_18515 PF06827 Zinc finger found in FPG and IleRS HQ398_18515 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ398_18520 PF04393 Protein of unknown function (DUF535) HQ398_18525 PF01467 Cytidylyltransferase-like HQ398_18530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_18535 PF00535 Glycosyl transferase family 2 HQ398_18540 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ398_18545 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ398_18550 PF03611 PTS system sugar-specific permease component HQ398_18560 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ398_18565 PF00356 Bacterial regulatory proteins, lacI family HQ398_18565 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ398_18570 PF00107 Zinc-binding dehydrogenase HQ398_18570 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_18585 PF03748 Flagellar basal body-associated protein FliL HQ398_18590 PF04345 Chorismate lyase HQ398_18595 PF01040 UbiA prenyltransferase family HQ398_18600 PF01553 Acyltransferase HQ398_18605 PF01726 LexA DNA binding domain HQ398_18605 PF00717 Peptidase S24-like HQ398_18615 PF02630 SCO1/SenC HQ398_18620 PF01554 MatE HQ398_18625 PF00588 SpoU rRNA Methylase family HQ398_18630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_18630 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ398_18630 PF00672 HAMP domain HQ398_18630 PF00512 His Kinase A (phospho-acceptor) domain HQ398_18635 PF00072 Response regulator receiver domain HQ398_18635 PF00486 Transcriptional regulatory protein, C terminal HQ398_18640 PF01545 Cation efflux family HQ398_18640 PF16916 Dimerisation domain of Zinc Transporter HQ398_18645 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_18645 PF06426 Serine acetyltransferase, N-terminal HQ398_18655 PF06005 Cell division protein ZapB HQ398_18670 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_18705 PF00356 Bacterial regulatory proteins, lacI family HQ398_18710 PF02929 Beta galactosidase small chain HQ398_18710 PF16353 Domain of unknown function(DUF4981) HQ398_18710 PF00703 Glycosyl hydrolases family 2 HQ398_18710 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ398_18710 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ398_18715 PF04074 YhcH/YjgK/YiaL HQ398_18720 PF13520 Amino acid permease HQ398_18725 PF01588 Putative tRNA binding domain HQ398_18730 PF13520 Amino acid permease HQ398_18735 PF13593 SBF-like CPA transporter family (DUF4137) HQ398_18775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_18775 PF03466 LysR substrate binding domain HQ398_18780 PF00756 Putative esterase HQ398_18785 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_18785 PF00107 Zinc-binding dehydrogenase HQ398_18790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_18790 PF03466 LysR substrate binding domain HQ398_18795 PF08340 Domain of unknown function (DUF1732) HQ398_18795 PF03755 YicC-like family, N-terminal region HQ398_18800 PF03725 3' exoribonuclease family, domain 2 HQ398_18800 PF01138 3' exoribonuclease family, domain 1 HQ398_18805 PF00156 Phosphoribosyl transferase domain HQ398_18815 PF13411 MerR HTH family regulatory protein HQ398_18820 PF00563 EAL domain HQ398_18820 PF01590 GAF domain HQ398_18820 PF00990 Diguanylate cyclase, GGDEF domain HQ398_18820 PF00360 Phytochrome region HQ398_18825 PF06288 Protein of unknown function (DUF1040) HQ398_18830 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ398_18830 PF13746 4Fe-4S dicluster domain HQ398_18830 PF12801 4Fe-4S binding domain HQ398_18835 PF01636 Phosphotransferase enzyme family HQ398_18840 PF01323 DSBA-like thioredoxin domain HQ398_18845 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ398_18845 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ398_18850 PF00857 Isochorismatase family HQ398_18860 PF04463 Protein of unknown function (DUF523) HQ398_18865 PF01553 Acyltransferase HQ398_18870 PF01553 Acyltransferase HQ398_18875 PF01078 Magnesium chelatase, subunit ChlI HQ398_18875 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ398_18880 PF00205 Thiamine pyrophosphate enzyme, central domain HQ398_18880 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ398_18880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ398_18890 PF01063 Amino-transferase class IV HQ398_18895 PF00920 Dehydratase family HQ398_18900 PF00291 Pyridoxal-phosphate dependent enzyme HQ398_18900 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ398_18905 PF07728 AAA domain (dynein-related subfamily) HQ398_18905 PF12102 Domain of unknown function (DUF3578) HQ398_18910 PF12102 Domain of unknown function (DUF3578) HQ398_18910 PF07728 AAA domain (dynein-related subfamily) HQ398_18935 PF01389 OmpA-like transmembrane domain HQ398_18935 PF00691 OmpA family HQ398_18945 PF00690 Cation transporter/ATPase, N-terminus HQ398_18945 PF00689 Cation transporting ATPase, C-terminus HQ398_18950 PF04143 Sulphur transport HQ398_18955 PF00892 EamA-like transporter family HQ398_18965 PF00171 Aldehyde dehydrogenase family HQ398_18980 PF00171 Aldehyde dehydrogenase family HQ398_18990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_18990 PF03466 LysR substrate binding domain HQ398_19000 PF02082 Transcriptional regulator HQ398_19015 PF02646 RmuC family HQ398_19025 PF00962 Adenosine/AMP deaminase HQ398_19035 PF00989 PAS fold HQ398_19035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_19035 PF00512 His Kinase A (phospho-acceptor) domain HQ398_19045 PF00120 Glutamine synthetase, catalytic domain HQ398_19045 PF03951 Glutamine synthetase, beta-Grasp domain HQ398_19050 PF00679 Elongation factor G C-terminus HQ398_19050 PF00009 Elongation factor Tu GTP binding domain HQ398_19050 PF03144 Elongation factor Tu domain 2 HQ398_19055 PF02386 Cation transport protein HQ398_19060 PF02080 TrkA-C domain HQ398_19060 PF02254 TrkA-N domain HQ398_19065 PF01189 16S rRNA methyltransferase RsmB/F HQ398_19065 PF01029 NusB family HQ398_19070 PF00551 Formyl transferase HQ398_19070 PF02911 Formyl transferase, C-terminal domain HQ398_19075 PF01327 Polypeptide deformylase HQ398_19080 PF01476 LysM domain HQ398_19085 PF02481 DNA recombination-mediator protein A HQ398_19085 PF17782 DprA winged helix domain HQ398_19090 PF04361 Protein of unknown function (DUF494) HQ398_19095 PF01396 Topoisomerase DNA binding C4 zinc finger HQ398_19100 PF00731 AIR carboxylase HQ398_19105 PF01300 Telomere recombination HQ398_19110 PF01218 Coproporphyrinogen III oxidase HQ398_19115 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ398_19115 PF01488 Shikimate / quinate 5-dehydrogenase HQ398_19115 PF08501 Shikimate dehydrogenase substrate binding domain HQ398_19120 PF07369 Protein of unknown function (DUF1488) HQ398_19125 PF01926 50S ribosome-binding GTPase HQ398_19130 PF00034 Cytochrome c HQ398_19135 PF04220 Der GTPase activator (YihI) HQ398_19140 PF10675 Protein of unknown function (DUF2489) HQ398_19145 PF06969 HemN C-terminal domain HQ398_19145 PF04055 Radical SAM superfamily HQ398_19170 PF00696 Amino acid kinase family HQ398_19175 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_19175 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_19180 PF03606 C4-dicarboxylate anaerobic carrier HQ398_19185 PF01316 Arginine repressor, DNA binding domain HQ398_19185 PF02863 Arginine repressor, C-terminal domain HQ398_19190 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ398_19190 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ398_19195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ398_19195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ398_19210 PF02666 Phosphatidylserine decarboxylase HQ398_19215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_19215 PF03466 LysR substrate binding domain HQ398_19220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ398_19225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_19225 PF00672 HAMP domain HQ398_19225 PF02743 Cache domain HQ398_19235 PF01470 Pyroglutamyl peptidase HQ398_19250 PF08212 Lipocalin-like domain HQ398_19255 PF06719 AraC-type transcriptional regulator N-terminus HQ398_19255 PF12833 Helix-turn-helix domain HQ398_19260 PF00465 Iron-containing alcohol dehydrogenase HQ398_19265 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ398_19265 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ398_19265 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ398_19270 PF02233 NAD(P) transhydrogenase beta subunit HQ398_19280 PF03313 Serine dehydratase alpha chain HQ398_19285 PF00375 Sodium:dicarboxylate symporter family HQ398_19290 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ398_19290 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ398_19295 PF00893 Small Multidrug Resistance protein HQ398_19300 PF00892 EamA-like transporter family HQ398_19305 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ398_19310 PF01522 Polysaccharide deacetylase HQ398_19325 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ398_19330 PF01609 Transposase DDE domain HQ398_19335 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ398_19335 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ398_19335 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ398_19350 PF13525 Outer membrane lipoprotein HQ398_19355 PF00849 RNA pseudouridylate synthase HQ398_19355 PF01479 S4 domain HQ398_19360 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ398_19365 PF17871 AAA lid domain HQ398_19365 PF02861 Clp amino terminal domain, pathogenicity island component HQ398_19365 PF00004 ATPase family associated with various cellular activities (AAA) HQ398_19365 PF10431 C-terminal, D2-small domain, of ClpB protein HQ398_19365 PF07724 AAA domain (Cdc48 subfamily) HQ398_19370 PF03590 Aspartate-ammonia ligase HQ398_19375 PF01037 Lrp/AsnC ligand binding domain HQ398_19385 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ398_19405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_19405 PF00512 His Kinase A (phospho-acceptor) domain HQ398_19415 PF00158 Sigma-54 interaction domain HQ398_19415 PF00072 Response regulator receiver domain HQ398_19420 PF06496 Protein of unknown function (DUF1097) HQ398_19425 PF00174 Oxidoreductase molybdopterin binding domain HQ398_19430 PF01794 Ferric reductase like transmembrane component HQ398_19445 PF00072 Response regulator receiver domain HQ398_19445 PF00486 Transcriptional regulatory protein, C terminal HQ398_19450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_19460 PF00384 Molybdopterin oxidoreductase HQ398_19460 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ398_19460 PF01568 Molydopterin dinucleotide binding domain HQ398_19465 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ398_19470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_19470 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_19470 PF00512 His Kinase A (phospho-acceptor) domain HQ398_19480 PF01751 Toprim domain HQ398_19480 PF01131 DNA topoisomerase HQ398_19485 PF02386 Cation transport protein HQ398_19490 PF02254 TrkA-N domain HQ398_19490 PF02080 TrkA-C domain HQ398_19495 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ398_19495 PF01565 FAD binding domain HQ398_19500 PF02237 Biotin protein ligase C terminal domain HQ398_19500 PF03099 Biotin/lipoate A/B protein ligase family HQ398_19500 PF08279 HTH domain HQ398_19505 PF00485 Phosphoribulokinase / Uridine kinase family HQ398_19520 PF00009 Elongation factor Tu GTP binding domain HQ398_19520 PF03144 Elongation factor Tu domain 2 HQ398_19520 PF03143 Elongation factor Tu C-terminal domain HQ398_19530 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ398_19535 PF02357 Transcription termination factor nusG HQ398_19535 PF00467 KOW motif HQ398_19540 PF00298 Ribosomal protein L11, RNA binding domain HQ398_19540 PF03946 Ribosomal protein L11, N-terminal domain HQ398_19545 PF00687 Ribosomal protein L1p/L10e family HQ398_19550 PF00466 Ribosomal protein L10 HQ398_19555 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ398_19555 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ398_19560 PF04563 RNA polymerase beta subunit HQ398_19560 PF04561 RNA polymerase Rpb2, domain 2 HQ398_19560 PF04565 RNA polymerase Rpb2, domain 3 HQ398_19560 PF10385 RNA polymerase beta subunit external 1 domain HQ398_19560 PF00562 RNA polymerase Rpb2, domain 6 HQ398_19560 PF04560 RNA polymerase Rpb2, domain 7 HQ398_19565 PF04997 RNA polymerase Rpb1, domain 1 HQ398_19565 PF00623 RNA polymerase Rpb1, domain 2 HQ398_19565 PF04983 RNA polymerase Rpb1, domain 3 HQ398_19565 PF05000 RNA polymerase Rpb1, domain 4 HQ398_19565 PF04998 RNA polymerase Rpb1, domain 5 HQ398_19570 PF08348 YheO-like PAS domain HQ398_19570 PF13309 HTH domain HQ398_19575 PF01042 Endoribonuclease L-PSP HQ398_19580 PF02635 DsrE/DsrF-like family HQ398_19585 PF02635 DsrE/DsrF-like family HQ398_19590 PF04077 DsrH like protein HQ398_19595 PF00164 Ribosomal protein S12/S23 HQ398_19600 PF00177 Ribosomal protein S7p/S5e HQ398_19605 PF00009 Elongation factor Tu GTP binding domain HQ398_19605 PF00679 Elongation factor G C-terminus HQ398_19605 PF03144 Elongation factor Tu domain 2 HQ398_19605 PF03764 Elongation factor G, domain IV HQ398_19605 PF14492 Elongation Factor G, domain II HQ398_19610 PF03143 Elongation factor Tu C-terminal domain HQ398_19610 PF03144 Elongation factor Tu domain 2 HQ398_19610 PF00009 Elongation factor Tu GTP binding domain HQ398_19655 PF00440 Bacterial regulatory proteins, tetR family HQ398_19675 PF07690 Major Facilitator Superfamily HQ398_19685 PF03466 LysR substrate binding domain HQ398_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_19695 PF00375 Sodium:dicarboxylate symporter family HQ398_19700 PF10678 Protein of unknown function (DUF2492) HQ398_19705 PF01914 MarC family integral membrane protein HQ398_19710 PF03466 LysR substrate binding domain HQ398_19710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_19715 PF02416 mttA/Hcf106 family HQ398_19735 PF13091 PLD-like domain HQ398_19750 PF00326 Prolyl oligopeptidase family HQ398_19750 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ398_19765 PF00106 short chain dehydrogenase HQ398_19770 PF03466 LysR substrate binding domain HQ398_19770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_19775 PF02525 Flavodoxin-like fold HQ398_19780 PF00999 Sodium/hydrogen exchanger family HQ398_19780 PF02254 TrkA-N domain HQ398_19805 PF00448 SRP54-type protein, GTPase domain HQ398_19805 PF02881 SRP54-type protein, helical bundle domain HQ398_19810 PF00005 ABC transporter HQ398_19815 PF18075 FtsX extracellular domain HQ398_19820 PF04545 Sigma-70, region 4 HQ398_19820 PF04542 Sigma-70 region 2 HQ398_19820 PF00140 Sigma-70 factor, region 1.2 HQ398_19825 PF00484 Carbonic anhydrase HQ398_19830 PF00392 Bacterial regulatory proteins, gntR family HQ398_19830 PF07702 UTRA domain HQ398_19835 PF01979 Amidohydrolase family HQ398_19840 PF00491 Arginase family HQ398_19845 PF17391 Urocanase N-terminal domain HQ398_19845 PF17392 Urocanase C-terminal domain HQ398_19845 PF01175 Urocanase Rossmann-like domain HQ398_19850 PF00221 Aromatic amino acid lyase HQ398_19855 PF01699 Sodium/calcium exchanger protein HQ398_19865 PF12792 CSS motif domain associated with EAL HQ398_19865 PF00563 EAL domain HQ398_19870 PF17157 Gammaproteobacterial periplasmic sensor domain HQ398_19870 PF00990 Diguanylate cyclase, GGDEF domain HQ398_19870 PF00563 EAL domain HQ398_19900 PF00263 Bacterial type II and III secretion system protein HQ398_19900 PF03958 Bacterial type II/III secretion system short domain HQ398_19915 PF00437 Type II/IV secretion system protein HQ398_19915 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ398_19920 PF00482 Type II secretion system (T2SS), protein F HQ398_19935 PF07963 Prokaryotic N-terminal methylation motif HQ398_19940 PF00114 Pilin (bacterial filament) HQ398_19940 PF07963 Prokaryotic N-terminal methylation motif HQ398_19970 PF04085 rod shape-determining protein MreC HQ398_19975 PF04093 rod shape-determining protein MreD HQ398_19980 PF02545 Maf-like protein HQ398_19985 PF00575 S1 RNA binding domain HQ398_19985 PF10150 Ribonuclease E/G family HQ398_19990 PF13502 AsmA-like C-terminal region HQ398_19990 PF13116 Protein of unknown function HQ398_20000 PF00795 Carbon-nitrogen hydrolase HQ398_20005 PF01523 Putative modulator of DNA gyrase HQ398_20015 PF01914 MarC family integral membrane protein HQ398_20020 PF07690 Major Facilitator Superfamily HQ398_20030 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ398_20055 PF00999 Sodium/hydrogen exchanger family HQ398_20060 PF02310 B12 binding domain HQ398_20060 PF02607 B12 binding domain HQ398_20060 PF00809 Pterin binding enzyme HQ398_20060 PF02574 Homocysteine S-methyltransferase HQ398_20060 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ398_20065 PF08443 RimK-like ATP-grasp domain HQ398_20065 PF18030 RimK PreATP-grasp domain HQ398_20070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ398_20075 PF00072 Response regulator receiver domain HQ398_20075 PF00486 Transcriptional regulatory protein, C terminal HQ398_20090 PF13411 MerR HTH family regulatory protein HQ398_20095 PF13667 ThiC-associated domain HQ398_20095 PF01964 Radical SAM ThiC family HQ398_20100 PF02581 Thiamine monophosphate synthase HQ398_20105 PF00899 ThiF family HQ398_20115 PF05690 Thiazole biosynthesis protein ThiG HQ398_20120 PF06968 Biotin and Thiamin Synthesis associated domain HQ398_20120 PF04055 Radical SAM superfamily HQ398_20145 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_20155 PF00990 Diguanylate cyclase, GGDEF domain HQ398_20165 PF06055 Exopolysaccharide synthesis, ExoD HQ398_20175 PF00990 Diguanylate cyclase, GGDEF domain HQ398_20180 PF00909 Ammonium Transporter Family HQ398_20185 PF05433 Glycine zipper 2TM domain HQ398_20190 PF00583 Acetyltransferase (GNAT) family HQ398_20200 PF11756 Nitrous oxide-stimulated promoter HQ398_20205 PF01321 Creatinase/Prolidase N-terminal domain HQ398_20205 PF00557 Metallopeptidase family M24 HQ398_20210 PF00392 Bacterial regulatory proteins, gntR family HQ398_20215 PF01293 Phosphoenolpyruvate carboxykinase HQ398_20220 PF01430 Hsp33 protein HQ398_20225 PF01479 S4 domain HQ398_20235 PF01569 PAP2 superfamily HQ398_20240 PF01594 AI-2E family transporter HQ398_20250 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ398_20255 PF02954 Bacterial regulatory protein, Fis family HQ398_20255 PF00989 PAS fold HQ398_20255 PF00158 Sigma-54 interaction domain HQ398_20260 PF00465 Iron-containing alcohol dehydrogenase HQ398_20265 PF03610 PTS system fructose IIA component HQ398_20265 PF05524 PEP-utilising enzyme, N-terminal HQ398_20265 PF00391 PEP-utilising enzyme, mobile domain HQ398_20265 PF00381 PTS HPr component phosphorylation site HQ398_20270 PF02734 DAK2 domain HQ398_20275 PF02733 Dak1 domain HQ398_20280 PF00860 Permease family HQ398_20285 PF00313 'Cold-shock' DNA-binding domain HQ398_20300 PF00436 Single-strand binding protein family HQ398_20305 PF17755 UvrA DNA-binding domain HQ398_20305 PF17760 UvrA interaction domain HQ398_20305 PF00005 ABC transporter HQ398_20310 PF00990 Diguanylate cyclase, GGDEF domain HQ398_20315 PF03922 OmpW family HQ398_20320 PF00672 HAMP domain HQ398_20320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_20335 PF02219 Methylenetetrahydrofolate reductase HQ398_20345 PF03594 Benzoate membrane transport protein HQ398_20350 PF07883 Cupin domain HQ398_20350 PF01381 Helix-turn-helix HQ398_20385 PF13380 CoA binding domain HQ398_20385 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ398_20385 PF00583 Acetyltransferase (GNAT) family HQ398_20410 PF00202 Aminotransferase class-III HQ398_20415 PF00654 Voltage gated chloride channel HQ398_20425 PF01521 Iron-sulphur cluster biosynthesis HQ398_20430 PF03553 Na+/H+ antiporter family HQ398_20470 PF00534 Glycosyl transferases group 1 HQ398_20470 PF08323 Starch synthase catalytic domain HQ398_20475 PF00483 Nucleotidyl transferase HQ398_20485 PF00701 Dihydrodipicolinate synthetase family HQ398_20490 PF01928 CYTH domain HQ398_20495 PF01865 Protein of unknown function DUF47 HQ398_20500 PF01384 Phosphate transporter family HQ398_20505 PF03447 Homoserine dehydrogenase, NAD binding domain HQ398_20505 PF00742 Homoserine dehydrogenase HQ398_20505 PF00696 Amino acid kinase family HQ398_20510 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ398_20515 PF01340 Met Apo-repressor, MetJ HQ398_20520 PF02311 AraC-like ligand binding domain HQ398_20520 PF12833 Helix-turn-helix domain HQ398_20525 PF01588 Putative tRNA binding domain HQ398_20530 PF03222 Tryptophan/tyrosine permease family HQ398_20535 PF00459 Inositol monophosphatase family HQ398_20540 PF00293 NUDIX domain HQ398_20545 PF13419 Haloacid dehalogenase-like hydrolase HQ398_20560 PF12464 Maltose acetyltransferase HQ398_20560 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_20580 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20585 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20590 PF00005 ABC transporter HQ398_20590 PF12857 TOBE-like domain HQ398_20595 PF03466 LysR substrate binding domain HQ398_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_20605 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20610 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20615 PF00005 ABC transporter HQ398_20620 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_20625 PF18416 N-acetylglucosamine binding protein domain 2 HQ398_20625 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ398_20630 PF00672 HAMP domain HQ398_20630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ398_20630 PF17200 Single Cache domain 2 HQ398_20645 PF14883 Hypothetical glycosyl hydrolase family 13 HQ398_20645 PF01522 Polysaccharide deacetylase HQ398_20650 PF00535 Glycosyl transferase family 2 HQ398_20680 PF11230 Protein of unknown function (DUF3029) HQ398_20685 PF04055 Radical SAM superfamily HQ398_20695 PF03466 LysR substrate binding domain HQ398_20695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_20700 PF00155 Aminotransferase class I and II HQ398_20705 PF11658 Cellulose biosynthesis protein BcsG HQ398_20715 PF06564 Cellulose biosynthesis protein BcsQ HQ398_20725 PF03170 Bacterial cellulose synthase subunit HQ398_20730 PF01270 Glycosyl hydrolases family 8 HQ398_20735 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) HQ398_20740 PF02583 Metal-sensitive transcriptional repressor HQ398_20755 PF17967 Pullulanase N2 domain HQ398_20755 PF18494 Pullulanase Ins domain HQ398_20755 PF03714 Bacterial pullanase-associated domain HQ398_20755 PF11852 Domain of unknown function (DUF3372) HQ398_20755 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ398_20760 PF00403 Heavy-metal-associated domain HQ398_20765 PF08534 Redoxin HQ398_20775 PF00271 Helicase conserved C-terminal domain HQ398_20775 PF00270 DEAD/DEAH box helicase HQ398_20785 PF03372 Endonuclease/Exonuclease/phosphatase family HQ398_20805 PF06062 Uncharacterised protein family (UPF0231) HQ398_20810 PF05651 Putative sugar diacid recognition HQ398_20810 PF13556 PucR C-terminal helix-turn-helix domain HQ398_20810 PF17853 GGDEF-like domain HQ398_20815 PF02447 GntP family permease HQ398_20820 PF02595 Glycerate kinase family HQ398_20830 PF00255 Glutathione peroxidase HQ398_20835 PF03466 LysR substrate binding domain HQ398_20835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_20840 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_20840 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_20840 PF07670 Nucleoside recognition HQ398_20850 PF02594 Uncharacterised ACR, YggU family COG1872 HQ398_20855 PF02325 YGGT family HQ398_20860 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ398_20860 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ398_20865 PF01168 Alanine racemase, N-terminal domain HQ398_20870 PF00437 Type II/IV secretion system protein HQ398_20880 PF03883 Peroxide stress protein YaaA HQ398_20890 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ398_20890 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ398_20895 PF00472 RF-1 domain HQ398_20900 PF00543 Nitrogen regulatory protein P-II HQ398_20905 PF13416 Bacterial extracellular solute-binding protein HQ398_20915 PF00005 ABC transporter HQ398_20915 PF08402 TOBE domain HQ398_20920 PF04261 Dyp-type peroxidase family HQ398_20925 PF01316 Arginine repressor, DNA binding domain HQ398_20925 PF02863 Arginine repressor, C-terminal domain HQ398_20930 PF00005 ABC transporter HQ398_20935 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ398_20940 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20945 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_20950 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ398_20950 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ398_20965 PF00970 Oxidoreductase FAD-binding domain HQ398_20965 PF00175 Oxidoreductase NAD-binding domain HQ398_20965 PF00042 Globin HQ398_20970 PF02082 Transcriptional regulator HQ398_20975 PF01595 Cyclin M transmembrane N-terminal domain HQ398_20975 PF03471 Transporter associated domain HQ398_20975 PF00571 CBS domain HQ398_20980 PF01578 Cytochrome C assembly protein HQ398_20985 PF02978 Signal peptide binding domain HQ398_20985 PF02881 SRP54-type protein, helical bundle domain HQ398_20985 PF00448 SRP54-type protein, GTPase domain HQ398_20990 PF00886 Ribosomal protein S16 HQ398_20995 PF01782 RimM N-terminal domain HQ398_20995 PF05239 PRC-barrel domain HQ398_21000 PF01746 tRNA (Guanine-1)-methyltransferase HQ398_21005 PF01245 Ribosomal protein L19 HQ398_21015 PF02976 DNA mismatch repair enzyme MutH HQ398_21020 PF00293 NUDIX domain HQ398_21030 PF01790 Prolipoprotein diacylglyceryl transferase HQ398_21035 PF00303 Thymidylate synthase HQ398_21040 PF06965 Na+/H+ antiporter 1 HQ398_21050 PF03466 LysR substrate binding domain HQ398_21050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_21055 PF01022 Bacterial regulatory protein, arsR family HQ398_21060 PF01649 Ribosomal protein S20 HQ398_21070 PF01687 Riboflavin kinase HQ398_21070 PF06574 FAD synthetase HQ398_21080 PF01252 Signal peptidase (SPase) II HQ398_21085 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ398_21090 PF02401 LytB protein HQ398_21125 PF07963 Prokaryotic N-terminal methylation motif HQ398_21130 PF02540 NAD synthase HQ398_21130 PF00795 Carbon-nitrogen hydrolase HQ398_21135 PF00543 Nitrogen regulatory protein P-II HQ398_21145 PF02664 S-Ribosylhomocysteinase (LuxS) HQ398_21155 PF07963 Prokaryotic N-terminal methylation motif HQ398_21160 PF01026 TatD related DNase HQ398_21165 PF07662 Na+ dependent nucleoside transporter C-terminus HQ398_21165 PF07670 Nucleoside recognition HQ398_21165 PF01773 Na+ dependent nucleoside transporter N-terminus HQ398_21175 PF01791 DeoC/LacD family aldolase HQ398_21180 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ398_21180 PF00591 Glycosyl transferase family, a/b domain HQ398_21180 PF02885 Glycosyl transferase family, helical bundle domain HQ398_21185 PF01676 Metalloenzyme superfamily HQ398_21190 PF01048 Phosphorylase superfamily HQ398_21215 PF18073 Rubredoxin metal binding domain HQ398_21220 PF07238 PilZ domain HQ398_21225 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ398_21230 PF00216 Bacterial DNA-binding protein HQ398_21245 PF01566 Natural resistance-associated macrophage protein HQ398_21250 PF01250 Ribosomal protein S6 HQ398_21255 PF01084 Ribosomal protein S18 HQ398_21260 PF03948 Ribosomal protein L9, C-terminal domain HQ398_21260 PF01281 Ribosomal protein L9, N-terminal domain HQ398_21265 PF00175 Oxidoreductase NAD-binding domain HQ398_21265 PF00970 Oxidoreductase FAD-binding domain HQ398_21285 PF08659 KR domain HQ398_21285 PF08240 Alcohol dehydrogenase GroES-like domain HQ398_21285 PF00698 Acyl transferase domain HQ398_21285 PF14765 Polyketide synthase dehydratase HQ398_21285 PF00550 Phosphopantetheine attachment site HQ398_21290 PF09335 SNARE associated Golgi protein HQ398_21295 PF00675 Insulinase (Peptidase family M16) HQ398_21295 PF05193 Peptidase M16 inactive domain HQ398_21300 PF04262 Glutamate-cysteine ligase HQ398_21305 PF00501 AMP-binding enzyme HQ398_21310 PF00583 Acetyltransferase (GNAT) family HQ398_21310 PF13673 Acetyltransferase (GNAT) domain HQ398_21320 PF17868 AAA lid domain HQ398_21320 PF12592 Protein of unknown function (DUF3763) HQ398_21320 PF07728 AAA domain (dynein-related subfamily) HQ398_21325 PF05762 VWA domain containing CoxE-like protein HQ398_21330 PF00990 Diguanylate cyclase, GGDEF domain HQ398_21330 PF00072 Response regulator receiver domain HQ398_21335 PF00009 Elongation factor Tu GTP binding domain HQ398_21335 PF03144 Elongation factor Tu domain 2 HQ398_21335 PF16658 Class II release factor RF3, C-terminal domain HQ398_21340 PF12804 MobA-like NTP transferase domain HQ398_21340 PF00132 Bacterial transferase hexapeptide (six repeats) HQ398_21340 PF14602 Hexapeptide repeat of succinyl-transferase HQ398_21345 PF00583 Acetyltransferase (GNAT) family HQ398_21350 PF07690 Major Facilitator Superfamily HQ398_21355 PF03466 LysR substrate binding domain HQ398_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ398_21365 PF13302 Acetyltransferase (GNAT) domain HQ398_21370 PF13302 Acetyltransferase (GNAT) domain HQ398_21380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ398_21380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ398_21385 PF07690 Major Facilitator Superfamily HQ398_21390 PF01725 Ham1 family HQ398_21395 PF06969 HemN C-terminal domain HQ398_21395 PF04055 Radical SAM superfamily HQ398_21400 PF03889 Alternative ribosome-rescue factor A HQ398_21405 PF13411 MerR HTH family regulatory protein HQ398_21415 PF02142 MGS-like domain HQ398_21415 PF01808 AICARFT/IMPCHase bienzyme HQ398_21420 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ398_21420 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ398_21420 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ398_21440 PF04546 Sigma-70, non-essential region HQ398_21440 PF03979 Sigma-70 factor, region 1.1 HQ398_21440 PF00140 Sigma-70 factor, region 1.2 HQ398_21440 PF04542 Sigma-70 region 2 HQ398_21440 PF04539 Sigma-70 region 3 HQ398_21440 PF04545 Sigma-70, region 4 HQ398_21445 PF10410 DnaB-helicase binding domain of primase HQ398_21445 PF08278 DNA primase DnaG DnaB-binding HQ398_21445 PF08275 DNA primase catalytic core, N-terminal domain HQ398_21445 PF01807 CHC2 zinc finger HQ398_21450 PF09424 Yqey-like protein HQ398_21455 PF01165 Ribosomal protein S21 HQ398_21460 PF00814 Glycoprotease family HQ398_21465 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ398_21470 PF10415 Fumarase C C-terminus HQ398_21470 PF00206 Lyase HQ398_21475 PF04186 FxsA cytoplasmic membrane protein HQ398_21480 PF01554 MatE HQ398_21485 PF00166 Chaperonin 10 Kd subunit HQ398_21490 PF00118 TCP-1/cpn60 chaperonin family HQ398_21500 PF03707 Bacterial signalling protein N terminal repeat HQ398_21500 PF00563 EAL domain HQ398_21500 PF00990 Diguanylate cyclase, GGDEF domain HQ398_21530 PF02867 Ribonucleotide reductase, barrel domain HQ398_21530 PF00317 Ribonucleotide reductase, all-alpha domain HQ398_21530 PF08343 Ribonucleotide reductase N-terminal HQ398_21540 PF02562 PhoH-like protein HQ398_21540 PF13638 PIN domain HQ398_21545 PF00005 ABC transporter HQ398_21550 PF00528 Binding-protein-dependent transport system inner membrane component HQ398_21570 PF00694 Aconitase C-terminal domain