locus-tag class description HQ399_00005 PF00253 Ribosomal protein S14p/S29e HQ399_00010 PF00281 Ribosomal protein L5 HQ399_00010 PF00673 ribosomal L5P family C-terminus HQ399_00015 PF00467 KOW motif HQ399_00015 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ399_00020 PF00238 Ribosomal protein L14p/L23e HQ399_00025 PF00366 Ribosomal protein S17 HQ399_00030 PF00831 Ribosomal L29 protein HQ399_00035 PF00252 Ribosomal protein L16p/L10e HQ399_00040 PF07650 KH domain HQ399_00040 PF00189 Ribosomal protein S3, C-terminal domain HQ399_00045 PF00237 Ribosomal protein L22p/L17e HQ399_00050 PF00203 Ribosomal protein S19 HQ399_00055 PF00181 Ribosomal Proteins L2, RNA binding domain HQ399_00055 PF03947 Ribosomal Proteins L2, C-terminal domain HQ399_00060 PF00276 Ribosomal protein L23 HQ399_00065 PF00573 Ribosomal protein L4/L1 family HQ399_00070 PF00297 Ribosomal protein L3 HQ399_00075 PF00338 Ribosomal protein S10p/S20e HQ399_00085 PF00672 HAMP domain HQ399_00085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_00085 PF00512 His Kinase A (phospho-acceptor) domain HQ399_00090 PF00072 Response regulator receiver domain HQ399_00090 PF00486 Transcriptional regulatory protein, C terminal HQ399_00095 PF03449 Transcription elongation factor, N-terminal HQ399_00095 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ399_00100 PF09371 Tex-like protein N-terminal domain HQ399_00100 PF00575 S1 RNA binding domain HQ399_00100 PF17674 HHH domain HQ399_00100 PF16921 Tex protein YqgF-like domain HQ399_00120 PF00561 alpha/beta hydrolase fold HQ399_00125 PF00156 Phosphoribosyl transferase domain HQ399_00130 PF01521 Iron-sulphur cluster biosynthesis HQ399_00130 PF01106 NifU-like domain HQ399_00135 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ399_00135 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ399_00140 PF02556 Preprotein translocase subunit SecB HQ399_00145 PF00581 Rhodanese-like domain HQ399_00150 PF01676 Metalloenzyme superfamily HQ399_00150 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ399_00155 PF01551 Peptidase family M23 HQ399_00165 PF00356 Bacterial regulatory proteins, lacI family HQ399_00165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ399_00180 PF01081 KDPG and KHG aldolase HQ399_00185 PF00920 Dehydratase family HQ399_00190 PF01202 Shikimate kinase HQ399_00195 PF02447 GntP family permease HQ399_00200 PF13091 PLD-like domain HQ399_00205 PF00271 Helicase conserved C-terminal domain HQ399_00205 PF00270 DEAD/DEAH box helicase HQ399_00205 PF17191 RecG wedge domain HQ399_00215 PF00583 Acetyltransferase (GNAT) family HQ399_00215 PF09500 Putative thioesterase (yiiD_Cterm) HQ399_00220 PF17284 Spermidine synthase tetramerisation domain HQ399_00225 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ399_00230 PF03631 Virulence factor BrkB HQ399_00235 PF00390 Malic enzyme, N-terminal domain HQ399_00235 PF03949 Malic enzyme, NAD binding domain HQ399_00240 PF03222 Tryptophan/tyrosine permease family HQ399_00245 PF11066 Protein of unknown function (DUF2867) HQ399_00245 PF13460 NAD(P)H-binding HQ399_00255 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ399_00255 PF18074 Primosomal protein N C-terminal domain HQ399_00255 PF17764 3′ DNA-binding domain (3′BD) HQ399_00255 PF00271 Helicase conserved C-terminal domain HQ399_00255 PF00270 DEAD/DEAH box helicase HQ399_00260 PF01197 Ribosomal protein L31 HQ399_00265 PF06206 CpeT/CpcT family (DUF1001) HQ399_00270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_00270 PF00672 HAMP domain HQ399_00275 PF03737 Aldolase/RraA HQ399_00280 PF02592 Putative vitamin uptake transporter HQ399_00290 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ399_00295 PF00034 Cytochrome c HQ399_00300 PF09382 RQC domain HQ399_00300 PF00271 Helicase conserved C-terminal domain HQ399_00300 PF00570 HRDC domain HQ399_00300 PF16124 RecQ zinc-binding HQ399_00300 PF00270 DEAD/DEAH box helicase HQ399_00305 PF03061 Thioesterase superfamily HQ399_00320 PF03473 MOSC domain HQ399_00320 PF03475 3-alpha domain HQ399_00325 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_00330 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_00335 PF08402 TOBE domain HQ399_00335 PF00005 ABC transporter HQ399_00340 PF13416 Bacterial extracellular solute-binding protein HQ399_00345 PF13416 Bacterial extracellular solute-binding protein HQ399_00350 PF00202 Aminotransferase class-III HQ399_00355 PF00120 Glutamine synthetase, catalytic domain HQ399_00360 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ399_00375 PF05981 CreA protein HQ399_00380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_00380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ399_00385 PF00012 Hsp70 protein HQ399_00400 PF00128 Alpha amylase, catalytic domain HQ399_00400 PF02903 Alpha amylase, N-terminal ig-like domain HQ399_00415 PF05958 tRNA (Uracil-5-)-methyltransferase HQ399_00420 PF02743 Cache domain HQ399_00420 PF00672 HAMP domain HQ399_00420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_00425 PF02653 Branched-chain amino acid transport system / permease component HQ399_00430 PF00005 ABC transporter HQ399_00435 PF13407 Periplasmic binding protein domain HQ399_00440 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ399_00440 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ399_00440 PF00703 Glycosyl hydrolases family 2 HQ399_00440 PF16353 Domain of unknown function(DUF4981) HQ399_00440 PF02929 Beta galactosidase small chain HQ399_00445 PF00356 Bacterial regulatory proteins, lacI family HQ399_00450 PF16363 GDP-mannose 4,6 dehydratase HQ399_00455 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ399_00455 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ399_00460 PF00288 GHMP kinases N terminal domain HQ399_00460 PF08544 GHMP kinases C terminal HQ399_00460 PF10509 Galactokinase galactose-binding signature HQ399_00465 PF01263 Aldose 1-epimerase HQ399_00470 PF02673 Bacitracin resistance protein BacA HQ399_00480 PF04545 Sigma-70, region 4 HQ399_00480 PF04542 Sigma-70 region 2 HQ399_00490 PF00750 tRNA synthetases class I (R) HQ399_00490 PF03485 Arginyl tRNA synthetase N terminal domain HQ399_00490 PF05746 DALR anticodon binding domain HQ399_00500 PF00227 Proteasome subunit HQ399_00505 PF07724 AAA domain (Cdc48 subfamily) HQ399_00505 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_00505 PF10431 C-terminal, D2-small domain, of ClpB protein HQ399_00515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_00520 PF00005 ABC transporter HQ399_00535 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ399_00535 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ399_00535 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ399_00535 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_00535 PF04324 BFD-like [2Fe-2S] binding domain HQ399_00540 PF13806 Rieske-like [2Fe-2S] domain HQ399_00545 PF01226 Formate/nitrite transporter HQ399_00550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ399_00550 PF14824 Sirohaem biosynthesis protein central HQ399_00550 PF10414 Sirohaem synthase dimerisation region HQ399_00555 PF03543 Yersinia/Haemophilus virulence surface antigen HQ399_00560 PF05932 Tir chaperone protein (CesT) family HQ399_00565 PF01769 Divalent cation transporter HQ399_00565 PF03448 MgtE intracellular N domain HQ399_00565 PF00571 CBS domain HQ399_00570 PF02653 Branched-chain amino acid transport system / permease component HQ399_00575 PF02653 Branched-chain amino acid transport system / permease component HQ399_00580 PF00005 ABC transporter HQ399_00585 PF02608 ABC transporter substrate-binding protein PnrA-like HQ399_00590 PF00580 UvrD/REP helicase N-terminal domain HQ399_00590 PF13361 UvrD-like helicase C-terminal domain HQ399_00610 PF14001 YdfZ protein HQ399_00645 PF01810 LysE type translocator HQ399_00650 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HQ399_00650 PF12833 Helix-turn-helix domain HQ399_00680 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ399_00685 PF00534 Glycosyl transferases group 1 HQ399_00705 PF01370 NAD dependent epimerase/dehydratase family HQ399_00710 PF08360 QacR-like protein, C-terminal region HQ399_00710 PF00440 Bacterial regulatory proteins, tetR family HQ399_00715 PF00155 Aminotransferase class I and II HQ399_00720 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_00720 PF00107 Zinc-binding dehydrogenase HQ399_00725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ399_00730 PF03707 Bacterial signalling protein N terminal repeat HQ399_00730 PF00563 EAL domain HQ399_00730 PF00990 Diguanylate cyclase, GGDEF domain HQ399_00735 PF00580 UvrD/REP helicase N-terminal domain HQ399_00735 PF13361 UvrD-like helicase C-terminal domain HQ399_00740 PF00266 Aminotransferase class-V HQ399_00745 PF02657 Fe-S metabolism associated domain HQ399_00750 PF00899 ThiF family HQ399_00780 PF01177 Asp/Glu/Hydantoin racemase HQ399_00785 PF07715 TonB-dependent Receptor Plug Domain HQ399_00785 PF00593 TonB dependent receptor HQ399_00790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_00790 PF03466 LysR substrate binding domain HQ399_00805 PF00731 AIR carboxylase HQ399_00810 PF02222 ATP-grasp domain HQ399_00810 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain HQ399_00815 PF07690 Major Facilitator Superfamily HQ399_00820 PF04397 LytTr DNA-binding domain HQ399_00820 PF00072 Response regulator receiver domain HQ399_00825 PF07694 5TMR of 5TMR-LYT HQ399_00825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_00825 PF06580 Histidine kinase HQ399_00835 PF00210 Ferritin-like domain HQ399_00840 PF07055 Enoyl reductase FAD binding domain HQ399_00840 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ399_00840 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ399_00845 PF00582 Universal stress protein family HQ399_00850 PF00579 tRNA synthetases class I (W and Y) HQ399_00855 PF03466 LysR substrate binding domain HQ399_00855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_00875 PF00892 EamA-like transporter family HQ399_00890 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ399_00895 PF00625 Guanylate kinase HQ399_00900 PF01192 RNA polymerase Rpb6 HQ399_00905 PF02824 TGS domain HQ399_00905 PF04607 Region found in RelA / SpoT proteins HQ399_00905 PF13291 ACT domain HQ399_00910 PF00588 SpoU rRNA Methylase family HQ399_00910 PF12105 SpoU, rRNA methylase, C-terminal HQ399_00915 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_00920 PF12146 Serine aminopeptidase, S33 HQ399_00960 PF00440 Bacterial regulatory proteins, tetR family HQ399_00965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_00970 PF00873 AcrB/AcrD/AcrF family HQ399_00975 PF00512 His Kinase A (phospho-acceptor) domain HQ399_00975 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_00980 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_00980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ399_00985 PF03814 Potassium-transporting ATPase A subunit HQ399_00995 PF02669 K+-transporting ATPase, c chain HQ399_01000 PF02702 Osmosensitive K+ channel His kinase sensor domain HQ399_01000 PF00512 His Kinase A (phospho-acceptor) domain HQ399_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_01000 PF13492 GAF domain HQ399_01000 PF13493 Domain of unknown function (DUF4118) HQ399_01005 PF00072 Response regulator receiver domain HQ399_01005 PF00486 Transcriptional regulatory protein, C terminal HQ399_01010 PF07690 Major Facilitator Superfamily HQ399_01025 PF00155 Aminotransferase class I and II HQ399_01030 PF00011 Hsp20/alpha crystallin family HQ399_01035 PF00011 Hsp20/alpha crystallin family HQ399_01045 PF12833 Helix-turn-helix domain HQ399_01045 PF01965 DJ-1/PfpI family HQ399_01050 PF13280 WYL domain HQ399_01050 PF08279 HTH domain HQ399_01065 PF00204 DNA gyrase B HQ399_01065 PF01751 Toprim domain HQ399_01065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_01065 PF18053 DNA gyrase B subunit insert domain HQ399_01065 PF00986 DNA gyrase B subunit, carboxyl terminus HQ399_01070 PF02463 RecF/RecN/SMC N terminal domain HQ399_01075 PF02767 DNA polymerase III beta subunit, central domain HQ399_01075 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ399_01075 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ399_01080 PF11638 DnaA N-terminal domain HQ399_01080 PF00308 Bacterial dnaA protein HQ399_01080 PF08299 Bacterial dnaA protein helix-turn-helix HQ399_01085 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_01090 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_01095 PF00005 ABC transporter HQ399_01100 PF00468 Ribosomal protein L34 HQ399_01105 PF00825 Ribonuclease P HQ399_01110 PF01809 Putative membrane protein insertion efficiency factor HQ399_01115 PF14849 YidC periplasmic domain HQ399_01115 PF02096 60Kd inner membrane protein HQ399_01120 PF10396 GTP-binding protein TrmE N-terminus HQ399_01120 PF12631 MnmE helical domain HQ399_01120 PF01926 50S ribosome-binding GTPase HQ399_01125 PF01032 FecCD transport family HQ399_01130 PF01497 Periplasmic binding protein HQ399_01135 PF00005 ABC transporter HQ399_01140 PF00005 ABC transporter HQ399_01145 PF07715 TonB-dependent Receptor Plug Domain HQ399_01145 PF00593 TonB dependent receptor HQ399_01150 PF00258 Flavodoxin HQ399_01155 PF01134 Glucose inhibited division protein A HQ399_01155 PF13932 GidA associated domain HQ399_01160 PF02527 rRNA small subunit methyltransferase G HQ399_01165 PF13614 AAA domain HQ399_01170 PF17762 HTH domain found in ParB protein HQ399_01170 PF02195 ParB-like nuclease domain HQ399_01180 PF00119 ATP synthase A chain HQ399_01185 PF00137 ATP synthase subunit C HQ399_01190 PF00430 ATP synthase B/B' CF(0) HQ399_01195 PF00213 ATP synthase delta (OSCP) subunit HQ399_01200 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ399_01200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_01200 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ399_01205 PF00231 ATP synthase HQ399_01210 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_01210 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ399_01215 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ399_01215 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ399_01220 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_01220 PF12804 MobA-like NTP transferase domain HQ399_01220 PF14602 Hexapeptide repeat of succinyl-transferase HQ399_01225 PF02397 Bacterial sugar transferase HQ399_01240 PF13807 G-rich domain on putative tyrosine kinase HQ399_01240 PF13614 AAA domain HQ399_01240 PF02706 Chain length determinant protein HQ399_01270 PF00534 Glycosyl transferases group 1 HQ399_01270 PF13439 Glycosyltransferase Family 4 HQ399_01285 PF06123 Inner membrane protein CreD HQ399_01295 PF00905 Penicillin binding protein transpeptidase domain HQ399_01300 PF00672 HAMP domain HQ399_01300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_01300 PF00512 His Kinase A (phospho-acceptor) domain HQ399_01305 PF00072 Response regulator receiver domain HQ399_01305 PF00486 Transcriptional regulatory protein, C terminal HQ399_01310 PF08220 DeoR-like helix-turn-helix domain HQ399_01310 PF00455 DeoR C terminal sensor domain HQ399_01315 PF01380 SIS domain HQ399_01320 PF00196 Bacterial regulatory proteins, luxR family HQ399_01320 PF03472 Autoinducer binding domain HQ399_01330 PF01618 MotA/TolQ/ExbB proton channel family HQ399_01335 PF01618 MotA/TolQ/ExbB proton channel family HQ399_01340 PF02472 Biopolymer transport protein ExbD/TolR HQ399_01345 PF03544 Gram-negative bacterial TonB protein C-terminal HQ399_01380 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HQ399_01385 PF07969 Amidohydrolase family HQ399_01395 PF01209 ubiE/COQ5 methyltransferase family HQ399_01400 PF02036 SCP-2 sterol transfer family HQ399_01405 PF03109 ABC1 family HQ399_01410 PF02416 mttA/Hcf106 family HQ399_01415 PF02416 mttA/Hcf106 family HQ399_01420 PF00902 Sec-independent protein translocase protein (TatC) HQ399_01425 PF01026 TatD related DNase HQ399_01430 PF00490 Delta-aminolevulinic acid dehydratase HQ399_01435 PF00704 Glycosyl hydrolases family 18 HQ399_01440 PF01432 Peptidase family M3 HQ399_01445 PF00563 EAL domain HQ399_01445 PF00990 Diguanylate cyclase, GGDEF domain HQ399_01445 PF03707 Bacterial signalling protein N terminal repeat HQ399_01450 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_01455 PF04445 Putative SAM-dependent methyltransferase HQ399_01465 PF02541 Ppx/GppA phosphatase family HQ399_01470 PF00271 Helicase conserved C-terminal domain HQ399_01470 PF00270 DEAD/DEAH box helicase HQ399_01475 PF00085 Thioredoxin HQ399_01480 PF07498 Rho termination factor, N-terminal domain HQ399_01480 PF07497 Rho termination factor, RNA-binding domain HQ399_01480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_01490 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ399_01495 PF00175 Oxidoreductase NAD-binding domain HQ399_01500 PF08448 PAS fold HQ399_01500 PF00563 EAL domain HQ399_01500 PF00990 Diguanylate cyclase, GGDEF domain HQ399_01505 PF04380 Membrane fusogenic activity HQ399_01510 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease HQ399_01510 PF01694 Rhomboid family HQ399_01515 PF00581 Rhodanese-like domain HQ399_01520 PF00005 ABC transporter HQ399_01525 PF00005 ABC transporter HQ399_01525 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ399_01530 PF02653 Branched-chain amino acid transport system / permease component HQ399_01530 PF11862 Domain of unknown function (DUF3382) HQ399_01535 PF02653 Branched-chain amino acid transport system / permease component HQ399_01540 PF13458 Periplasmic binding protein HQ399_01545 PF00356 Bacterial regulatory proteins, lacI family HQ399_01550 PF00672 HAMP domain HQ399_01550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_01550 PF17200 Single Cache domain 2 HQ399_01560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_01560 PF02743 Cache domain HQ399_01560 PF00672 HAMP domain HQ399_01565 PF00360 Phytochrome region HQ399_01565 PF00563 EAL domain HQ399_01565 PF01590 GAF domain HQ399_01565 PF00990 Diguanylate cyclase, GGDEF domain HQ399_01570 PF11008 Protein of unknown function (DUF2846) HQ399_01575 PF05746 DALR anticodon binding domain HQ399_01575 PF02092 Glycyl-tRNA synthetase beta subunit HQ399_01580 PF02091 Glycyl-tRNA synthetase alpha subunit HQ399_01585 PF03352 Methyladenine glycosylase HQ399_01590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_01590 PF17200 Single Cache domain 2 HQ399_01590 PF00672 HAMP domain HQ399_01595 PF13488 Glycine zipper HQ399_01595 PF00691 OmpA family HQ399_01600 PF01042 Endoribonuclease L-PSP HQ399_01605 PF01206 Sulfurtransferase TusA HQ399_01615 PF01547 Bacterial extracellular solute-binding protein HQ399_01620 PF00672 HAMP domain HQ399_01620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_01620 PF00512 His Kinase A (phospho-acceptor) domain HQ399_01625 PF00072 Response regulator receiver domain HQ399_01625 PF00486 Transcriptional regulatory protein, C terminal HQ399_01630 PF02803 Thiolase, C-terminal domain HQ399_01630 PF00108 Thiolase, N-terminal domain HQ399_01635 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ399_01635 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ399_01635 PF00378 Enoyl-CoA hydratase/isomerase HQ399_01640 PF00501 AMP-binding enzyme HQ399_01640 PF13193 AMP-binding enzyme C-terminal domain HQ399_01645 PF00557 Metallopeptidase family M24 HQ399_01650 PF09186 Domain of unknown function (DUF1949) HQ399_01650 PF01205 Uncharacterized protein family UPF0029 HQ399_01655 PF02386 Cation transport protein HQ399_01660 PF12724 Flavodoxin domain HQ399_01695 PF13380 CoA binding domain HQ399_01695 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ399_01695 PF00583 Acetyltransferase (GNAT) family HQ399_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_01710 PF03466 LysR substrate binding domain HQ399_01715 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ399_01715 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ399_01720 PF00342 Phosphoglucose isomerase HQ399_01725 PF00924 Mechanosensitive ion channel HQ399_01725 PF05552 Conserved TM helix HQ399_01730 PF00440 Bacterial regulatory proteins, tetR family HQ399_01735 PF00692 dUTPase HQ399_01740 PF04127 DNA / pantothenate metabolism flavoprotein HQ399_01740 PF02441 Flavoprotein HQ399_01745 PF04002 RadC-like JAB domain HQ399_01750 PF00830 Ribosomal L28 family HQ399_01755 PF00471 Ribosomal protein L33 HQ399_01765 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ399_01765 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ399_01765 PF06827 Zinc finger found in FPG and IleRS HQ399_01770 PF04393 Protein of unknown function (DUF535) HQ399_01775 PF01467 Cytidylyltransferase-like HQ399_01780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ399_01785 PF00535 Glycosyl transferase family 2 HQ399_01790 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ399_01795 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ399_01795 PF00534 Glycosyl transferases group 1 HQ399_01800 PF03611 PTS system sugar-specific permease component HQ399_01810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_01815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ399_01815 PF00356 Bacterial regulatory proteins, lacI family HQ399_01820 PF00107 Zinc-binding dehydrogenase HQ399_01820 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_01840 PF04345 Chorismate lyase HQ399_01845 PF01040 UbiA prenyltransferase family HQ399_01850 PF01553 Acyltransferase HQ399_01855 PF01726 LexA DNA binding domain HQ399_01855 PF00717 Peptidase S24-like HQ399_01865 PF02630 SCO1/SenC HQ399_01870 PF01554 MatE HQ399_01875 PF00588 SpoU rRNA Methylase family HQ399_01880 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ399_01880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_01880 PF00512 His Kinase A (phospho-acceptor) domain HQ399_01880 PF00672 HAMP domain HQ399_01885 PF00486 Transcriptional regulatory protein, C terminal HQ399_01885 PF00072 Response regulator receiver domain HQ399_01890 PF01545 Cation efflux family HQ399_01890 PF16916 Dimerisation domain of Zinc Transporter HQ399_01895 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_01895 PF06426 Serine acetyltransferase, N-terminal HQ399_01905 PF06005 Cell division protein ZapB HQ399_01915 PF01612 3'-5' exonuclease HQ399_01915 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ399_01915 PF00476 DNA polymerase family A HQ399_01915 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ399_01920 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_01955 PF00356 Bacterial regulatory proteins, lacI family HQ399_01960 PF00703 Glycosyl hydrolases family 2 HQ399_01960 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ399_01960 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ399_01960 PF02929 Beta galactosidase small chain HQ399_01960 PF16353 Domain of unknown function(DUF4981) HQ399_01965 PF04074 YhcH/YjgK/YiaL HQ399_01970 PF13520 Amino acid permease HQ399_01975 PF01588 Putative tRNA binding domain HQ399_01980 PF13520 Amino acid permease HQ399_01985 PF13593 SBF-like CPA transporter family (DUF4137) HQ399_01990 PF12867 DinB superfamily HQ399_01990 PF03781 Sulfatase-modifying factor enzyme 1 HQ399_02030 PF03466 LysR substrate binding domain HQ399_02030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_02035 PF00419 Fimbrial protein HQ399_02040 PF13953 PapC C-terminal domain HQ399_02040 PF13954 PapC N-terminal domain HQ399_02040 PF00577 Outer membrane usher protein HQ399_02045 PF02753 Pili assembly chaperone PapD, C-terminal domain HQ399_02045 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain HQ399_02050 PF00419 Fimbrial protein HQ399_02065 PF00529 HlyD membrane-fusion protein of T1SS HQ399_02065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_02075 PF03755 YicC-like family, N-terminal region HQ399_02075 PF08340 Domain of unknown function (DUF1732) HQ399_02080 PF01138 3' exoribonuclease family, domain 1 HQ399_02080 PF03725 3' exoribonuclease family, domain 2 HQ399_02085 PF00156 Phosphoribosyl transferase domain HQ399_02090 PF00403 Heavy-metal-associated domain HQ399_02095 PF13411 MerR HTH family regulatory protein HQ399_02100 PF01590 GAF domain HQ399_02100 PF00563 EAL domain HQ399_02100 PF00360 Phytochrome region HQ399_02100 PF00990 Diguanylate cyclase, GGDEF domain HQ399_02105 PF06288 Protein of unknown function (DUF1040) HQ399_02110 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ399_02110 PF12801 4Fe-4S binding domain HQ399_02110 PF13746 4Fe-4S dicluster domain HQ399_02115 PF01636 Phosphotransferase enzyme family HQ399_02120 PF01323 DSBA-like thioredoxin domain HQ399_02125 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain HQ399_02125 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family HQ399_02130 PF00857 Isochorismatase family HQ399_02140 PF04463 Protein of unknown function (DUF523) HQ399_02145 PF01553 Acyltransferase HQ399_02150 PF01553 Acyltransferase HQ399_02155 PF01078 Magnesium chelatase, subunit ChlI HQ399_02155 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ399_02160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_02160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ399_02160 PF00205 Thiamine pyrophosphate enzyme, central domain HQ399_02170 PF01063 Amino-transferase class IV HQ399_02175 PF00920 Dehydratase family HQ399_02180 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ399_02180 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_02185 PF00691 OmpA family HQ399_02185 PF01389 OmpA-like transmembrane domain HQ399_02195 PF00689 Cation transporting ATPase, C-terminus HQ399_02195 PF00690 Cation transporter/ATPase, N-terminus HQ399_02200 PF04143 Sulphur transport HQ399_02205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_02205 PF00672 HAMP domain HQ399_02205 PF12729 Four helix bundle sensory module for signal transduction HQ399_02210 PF00892 EamA-like transporter family HQ399_02220 PF00171 Aldehyde dehydrogenase family HQ399_02225 PF01381 Helix-turn-helix HQ399_02225 PF07883 Cupin domain HQ399_02230 PF00202 Aminotransferase class-III HQ399_02235 PF00171 Aldehyde dehydrogenase family HQ399_02240 PF00117 Glutamine amidotransferase class-I HQ399_02240 PF02540 NAD synthase HQ399_02240 PF00958 GMP synthase C terminal domain HQ399_02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_02245 PF03466 LysR substrate binding domain HQ399_02250 PF00294 pfkB family carbohydrate kinase HQ399_02255 PF02082 Transcriptional regulator HQ399_02270 PF02646 RmuC family HQ399_02275 PF00962 Adenosine/AMP deaminase HQ399_02280 PF00158 Sigma-54 interaction domain HQ399_02280 PF00072 Response regulator receiver domain HQ399_02280 PF02954 Bacterial regulatory protein, Fis family HQ399_02285 PF00989 PAS fold HQ399_02285 PF00512 His Kinase A (phospho-acceptor) domain HQ399_02285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_02295 PF03951 Glutamine synthetase, beta-Grasp domain HQ399_02295 PF00120 Glutamine synthetase, catalytic domain HQ399_02300 PF03144 Elongation factor Tu domain 2 HQ399_02300 PF00009 Elongation factor Tu GTP binding domain HQ399_02300 PF00679 Elongation factor G C-terminus HQ399_02305 PF02386 Cation transport protein HQ399_02310 PF02080 TrkA-C domain HQ399_02310 PF02254 TrkA-N domain HQ399_02315 PF01029 NusB family HQ399_02315 PF01189 16S rRNA methyltransferase RsmB/F HQ399_02320 PF02911 Formyl transferase, C-terminal domain HQ399_02320 PF00551 Formyl transferase HQ399_02325 PF01327 Polypeptide deformylase HQ399_02330 PF01476 LysM domain HQ399_02335 PF02481 DNA recombination-mediator protein A HQ399_02335 PF17782 DprA winged helix domain HQ399_02340 PF04361 Protein of unknown function (DUF494) HQ399_02345 PF01396 Topoisomerase DNA binding C4 zinc finger HQ399_02350 PF00731 AIR carboxylase HQ399_02355 PF01300 Telomere recombination HQ399_02360 PF01218 Coproporphyrinogen III oxidase HQ399_02365 PF18317 Shikimate 5'-dehydrogenase C-terminal domain HQ399_02365 PF01488 Shikimate / quinate 5-dehydrogenase HQ399_02365 PF08501 Shikimate dehydrogenase substrate binding domain HQ399_02370 PF07369 Protein of unknown function (DUF1488) HQ399_02375 PF01926 50S ribosome-binding GTPase HQ399_02380 PF00034 Cytochrome c HQ399_02385 PF04220 Der GTPase activator (YihI) HQ399_02390 PF10675 Protein of unknown function (DUF2489) HQ399_02395 PF06969 HemN C-terminal domain HQ399_02395 PF04055 Radical SAM superfamily HQ399_02420 PF00696 Amino acid kinase family HQ399_02425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ399_02425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ399_02430 PF03606 C4-dicarboxylate anaerobic carrier HQ399_02435 PF01316 Arginine repressor, DNA binding domain HQ399_02435 PF02863 Arginine repressor, C-terminal domain HQ399_02440 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ399_02440 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ399_02445 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ399_02445 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ399_02460 PF02666 Phosphatidylserine decarboxylase HQ399_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_02465 PF03466 LysR substrate binding domain HQ399_02475 PF02743 Cache domain HQ399_02475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_02475 PF00672 HAMP domain HQ399_02485 PF01470 Pyroglutamyl peptidase HQ399_02500 PF08212 Lipocalin-like domain HQ399_02505 PF06719 AraC-type transcriptional regulator N-terminus HQ399_02505 PF12833 Helix-turn-helix domain HQ399_02510 PF00465 Iron-containing alcohol dehydrogenase HQ399_02515 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ399_02515 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ399_02515 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ399_02520 PF02233 NAD(P) transhydrogenase beta subunit HQ399_02590 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ399_02660 PF00929 Exonuclease HQ399_02735 PF00589 Phage integrase family HQ399_02735 PF02899 Phage integrase, N-terminal SAM-like domain HQ399_02745 PF03313 Serine dehydratase alpha chain HQ399_02750 PF00375 Sodium:dicarboxylate symporter family HQ399_02755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ399_02755 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_02760 PF00893 Small Multidrug Resistance protein HQ399_02765 PF00892 EamA-like transporter family HQ399_02770 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase HQ399_02775 PF01522 Polysaccharide deacetylase HQ399_02780 PF00551 Formyl transferase HQ399_02780 PF02911 Formyl transferase, C-terminal domain HQ399_02780 PF01370 NAD dependent epimerase/dehydratase family HQ399_02785 PF00535 Glycosyl transferase family 2 HQ399_02790 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ399_02795 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ399_02795 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ399_02795 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ399_02805 PF13525 Outer membrane lipoprotein HQ399_02810 PF00849 RNA pseudouridylate synthase HQ399_02810 PF01479 S4 domain HQ399_02815 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ399_02820 PF17871 AAA lid domain HQ399_02820 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_02820 PF07724 AAA domain (Cdc48 subfamily) HQ399_02820 PF02861 Clp amino terminal domain, pathogenicity island component HQ399_02820 PF10431 C-terminal, D2-small domain, of ClpB protein HQ399_02825 PF03590 Aspartate-ammonia ligase HQ399_02830 PF01037 Lrp/AsnC ligand binding domain HQ399_02840 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ399_02860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_02860 PF00512 His Kinase A (phospho-acceptor) domain HQ399_02870 PF00072 Response regulator receiver domain HQ399_02870 PF00158 Sigma-54 interaction domain HQ399_02875 PF06496 Protein of unknown function (DUF1097) HQ399_02880 PF00174 Oxidoreductase molybdopterin binding domain HQ399_02900 PF00072 Response regulator receiver domain HQ399_02900 PF00486 Transcriptional regulatory protein, C terminal HQ399_02905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_02915 PF00384 Molybdopterin oxidoreductase HQ399_02915 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ399_02915 PF01568 Molydopterin dinucleotide binding domain HQ399_02920 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ399_02925 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_02925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_02925 PF00512 His Kinase A (phospho-acceptor) domain HQ399_02935 PF01131 DNA topoisomerase HQ399_02935 PF01751 Toprim domain HQ399_02940 PF02386 Cation transport protein HQ399_02945 PF02254 TrkA-N domain HQ399_02945 PF02080 TrkA-C domain HQ399_02950 PF01565 FAD binding domain HQ399_02950 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ399_02955 PF08279 HTH domain HQ399_02955 PF03099 Biotin/lipoate A/B protein ligase family HQ399_02955 PF02237 Biotin protein ligase C terminal domain HQ399_02960 PF00485 Phosphoribulokinase / Uridine kinase family HQ399_02975 PF00009 Elongation factor Tu GTP binding domain HQ399_02975 PF03144 Elongation factor Tu domain 2 HQ399_02975 PF03143 Elongation factor Tu C-terminal domain HQ399_02985 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ399_02990 PF00467 KOW motif HQ399_02990 PF02357 Transcription termination factor nusG HQ399_02995 PF00298 Ribosomal protein L11, RNA binding domain HQ399_02995 PF03946 Ribosomal protein L11, N-terminal domain HQ399_03000 PF00687 Ribosomal protein L1p/L10e family HQ399_03005 PF00466 Ribosomal protein L10 HQ399_03010 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ399_03010 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ399_03015 PF00562 RNA polymerase Rpb2, domain 6 HQ399_03015 PF04560 RNA polymerase Rpb2, domain 7 HQ399_03015 PF04565 RNA polymerase Rpb2, domain 3 HQ399_03015 PF04563 RNA polymerase beta subunit HQ399_03015 PF10385 RNA polymerase beta subunit external 1 domain HQ399_03015 PF04561 RNA polymerase Rpb2, domain 2 HQ399_03020 PF04997 RNA polymerase Rpb1, domain 1 HQ399_03020 PF00623 RNA polymerase Rpb1, domain 2 HQ399_03020 PF04983 RNA polymerase Rpb1, domain 3 HQ399_03020 PF05000 RNA polymerase Rpb1, domain 4 HQ399_03020 PF04998 RNA polymerase Rpb1, domain 5 HQ399_03025 PF13309 HTH domain HQ399_03025 PF08348 YheO-like PAS domain HQ399_03030 PF01042 Endoribonuclease L-PSP HQ399_03035 PF02635 DsrE/DsrF-like family HQ399_03040 PF02635 DsrE/DsrF-like family HQ399_03045 PF04077 DsrH like protein HQ399_03050 PF00164 Ribosomal protein S12/S23 HQ399_03055 PF00177 Ribosomal protein S7p/S5e HQ399_03060 PF00679 Elongation factor G C-terminus HQ399_03060 PF14492 Elongation Factor G, domain II HQ399_03060 PF03764 Elongation factor G, domain IV HQ399_03060 PF00009 Elongation factor Tu GTP binding domain HQ399_03060 PF03144 Elongation factor Tu domain 2 HQ399_03065 PF00009 Elongation factor Tu GTP binding domain HQ399_03065 PF03143 Elongation factor Tu C-terminal domain HQ399_03065 PF03144 Elongation factor Tu domain 2 HQ399_03110 PF00440 Bacterial regulatory proteins, tetR family HQ399_03125 PF07947 YhhN family HQ399_03130 PF07690 Major Facilitator Superfamily HQ399_03135 PF13533 Biotin-lipoyl like HQ399_03140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_03140 PF03466 LysR substrate binding domain HQ399_03150 PF00375 Sodium:dicarboxylate symporter family HQ399_03155 PF10678 Protein of unknown function (DUF2492) HQ399_03160 PF01914 MarC family integral membrane protein HQ399_03165 PF03466 LysR substrate binding domain HQ399_03165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_03170 PF02416 mttA/Hcf106 family HQ399_03180 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_03180 PF01464 Transglycosylase SLT domain HQ399_03190 PF13091 PLD-like domain HQ399_03205 PF00326 Prolyl oligopeptidase family HQ399_03205 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ399_03220 PF00106 short chain dehydrogenase HQ399_03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_03225 PF03466 LysR substrate binding domain HQ399_03230 PF02525 Flavodoxin-like fold HQ399_03235 PF00999 Sodium/hydrogen exchanger family HQ399_03235 PF02254 TrkA-N domain HQ399_03260 PF02881 SRP54-type protein, helical bundle domain HQ399_03260 PF00448 SRP54-type protein, GTPase domain HQ399_03270 PF18075 FtsX extracellular domain HQ399_03275 PF04545 Sigma-70, region 4 HQ399_03275 PF04542 Sigma-70 region 2 HQ399_03275 PF00140 Sigma-70 factor, region 1.2 HQ399_03280 PF00484 Carbonic anhydrase HQ399_03285 PF00392 Bacterial regulatory proteins, gntR family HQ399_03285 PF07702 UTRA domain HQ399_03290 PF01979 Amidohydrolase family HQ399_03295 PF00491 Arginase family HQ399_03300 PF01175 Urocanase Rossmann-like domain HQ399_03300 PF17392 Urocanase C-terminal domain HQ399_03300 PF17391 Urocanase N-terminal domain HQ399_03305 PF00221 Aromatic amino acid lyase HQ399_03310 PF01699 Sodium/calcium exchanger protein HQ399_03320 PF12792 CSS motif domain associated with EAL HQ399_03320 PF00563 EAL domain HQ399_03325 PF00990 Diguanylate cyclase, GGDEF domain HQ399_03325 PF17157 Gammaproteobacterial periplasmic sensor domain HQ399_03325 PF00563 EAL domain HQ399_03355 PF03958 Bacterial type II/III secretion system short domain HQ399_03355 PF00263 Bacterial type II and III secretion system protein HQ399_03370 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ399_03370 PF00437 Type II/IV secretion system protein HQ399_03375 PF00482 Type II secretion system (T2SS), protein F HQ399_03390 PF07963 Prokaryotic N-terminal methylation motif HQ399_03395 PF14245 Type IV pilin PilA HQ399_03395 PF07963 Prokaryotic N-terminal methylation motif HQ399_03425 PF04085 rod shape-determining protein MreC HQ399_03430 PF04093 rod shape-determining protein MreD HQ399_03435 PF02545 Maf-like protein HQ399_03440 PF10150 Ribonuclease E/G family HQ399_03440 PF00575 S1 RNA binding domain HQ399_03445 PF13502 AsmA-like C-terminal region HQ399_03445 PF13116 Protein of unknown function HQ399_03460 PF00795 Carbon-nitrogen hydrolase HQ399_03465 PF01523 Putative modulator of DNA gyrase HQ399_03475 PF01914 MarC family integral membrane protein HQ399_03480 PF07690 Major Facilitator Superfamily HQ399_03490 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ399_03515 PF00999 Sodium/hydrogen exchanger family HQ399_03520 PF02574 Homocysteine S-methyltransferase HQ399_03520 PF00809 Pterin binding enzyme HQ399_03520 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ399_03520 PF02607 B12 binding domain HQ399_03520 PF02310 B12 binding domain HQ399_03525 PF08443 RimK-like ATP-grasp domain HQ399_03525 PF18030 RimK PreATP-grasp domain HQ399_03530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_03535 PF00486 Transcriptional regulatory protein, C terminal HQ399_03535 PF00072 Response regulator receiver domain HQ399_03550 PF03440 Aerolysin/Pertussis toxin (APT) domain HQ399_03550 PF01117 Aerolysin toxin HQ399_03555 PF13411 MerR HTH family regulatory protein HQ399_03560 PF13667 ThiC-associated domain HQ399_03560 PF01964 Radical SAM ThiC family HQ399_03565 PF02581 Thiamine monophosphate synthase HQ399_03570 PF00899 ThiF family HQ399_03580 PF05690 Thiazole biosynthesis protein ThiG HQ399_03585 PF04055 Radical SAM superfamily HQ399_03585 PF06968 Biotin and Thiamin Synthesis associated domain HQ399_03595 PF13036 Peptidoglycan-synthase activator LpoB HQ399_03600 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_03610 PF00990 Diguanylate cyclase, GGDEF domain HQ399_03620 PF06055 Exopolysaccharide synthesis, ExoD HQ399_03630 PF00990 Diguanylate cyclase, GGDEF domain HQ399_03635 PF00909 Ammonium Transporter Family HQ399_03640 PF05433 Glycine zipper 2TM domain HQ399_03645 PF00583 Acetyltransferase (GNAT) family HQ399_03655 PF11756 Nitrous oxide-stimulated promoter HQ399_03660 PF01321 Creatinase/Prolidase N-terminal domain HQ399_03660 PF00557 Metallopeptidase family M24 HQ399_03665 PF00392 Bacterial regulatory proteins, gntR family HQ399_03670 PF01293 Phosphoenolpyruvate carboxykinase HQ399_03675 PF01430 Hsp33 protein HQ399_03680 PF01479 S4 domain HQ399_03690 PF00293 NUDIX domain HQ399_03695 PF01594 AI-2E family transporter HQ399_03705 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ399_03710 PF13416 Bacterial extracellular solute-binding protein HQ399_03715 PF00795 Carbon-nitrogen hydrolase HQ399_03720 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ399_03725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_03725 PF03466 LysR substrate binding domain HQ399_03730 PF02954 Bacterial regulatory protein, Fis family HQ399_03730 PF00989 PAS fold HQ399_03730 PF00158 Sigma-54 interaction domain HQ399_03740 PF03610 PTS system fructose IIA component HQ399_03740 PF05524 PEP-utilising enzyme, N-terminal HQ399_03740 PF00391 PEP-utilising enzyme, mobile domain HQ399_03740 PF00381 PTS HPr component phosphorylation site HQ399_03745 PF02734 DAK2 domain HQ399_03750 PF02733 Dak1 domain HQ399_03755 PF00860 Permease family HQ399_03760 PF00313 'Cold-shock' DNA-binding domain HQ399_03775 PF00436 Single-strand binding protein family HQ399_03780 PF00005 ABC transporter HQ399_03780 PF17755 UvrA DNA-binding domain HQ399_03780 PF17760 UvrA interaction domain HQ399_03785 PF00990 Diguanylate cyclase, GGDEF domain HQ399_03790 PF03922 OmpW family HQ399_03795 PF00672 HAMP domain HQ399_03795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_03810 PF02219 Methylenetetrahydrofolate reductase HQ399_03820 PF03594 Benzoate membrane transport protein HQ399_03825 PF01381 Helix-turn-helix HQ399_03825 PF07883 Cupin domain HQ399_03860 PF00583 Acetyltransferase (GNAT) family HQ399_03860 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ399_03860 PF13380 CoA binding domain HQ399_03885 PF00202 Aminotransferase class-III HQ399_03890 PF00654 Voltage gated chloride channel HQ399_03900 PF01521 Iron-sulphur cluster biosynthesis HQ399_03905 PF03553 Na+/H+ antiporter family HQ399_03945 PF08323 Starch synthase catalytic domain HQ399_03945 PF00534 Glycosyl transferases group 1 HQ399_03950 PF00483 Nucleotidyl transferase HQ399_03955 PF05175 Methyltransferase small domain HQ399_03955 PF08468 Methyltransferase small domain N-terminal HQ399_03960 PF00701 Dihydrodipicolinate synthetase family HQ399_03965 PF01928 CYTH domain HQ399_03970 PF01865 Protein of unknown function DUF47 HQ399_03975 PF01384 Phosphate transporter family HQ399_03980 PF00696 Amino acid kinase family HQ399_03980 PF00742 Homoserine dehydrogenase HQ399_03980 PF03447 Homoserine dehydrogenase, NAD binding domain HQ399_03985 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ399_03990 PF01340 Met Apo-repressor, MetJ HQ399_03995 PF12833 Helix-turn-helix domain HQ399_03995 PF02311 AraC-like ligand binding domain HQ399_04000 PF01588 Putative tRNA binding domain HQ399_04005 PF03222 Tryptophan/tyrosine permease family HQ399_04010 PF00459 Inositol monophosphatase family HQ399_04015 PF00293 NUDIX domain HQ399_04020 PF13419 Haloacid dehalogenase-like hydrolase HQ399_04035 PF12464 Maltose acetyltransferase HQ399_04035 PF14602 Hexapeptide repeat of succinyl-transferase HQ399_04040 PF13194 Domain of unknown function (DUF4010) HQ399_04055 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04060 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04065 PF00005 ABC transporter HQ399_04065 PF12857 TOBE-like domain HQ399_04070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_04070 PF03466 LysR substrate binding domain HQ399_04075 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_04080 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04085 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04090 PF00005 ABC transporter HQ399_04095 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_04100 PF18416 N-acetylglucosamine binding protein domain 2 HQ399_04100 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ399_04105 PF00672 HAMP domain HQ399_04105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_04105 PF12729 Four helix bundle sensory module for signal transduction HQ399_04120 PF14883 Hypothetical glycosyl hydrolase family 13 HQ399_04120 PF01522 Polysaccharide deacetylase HQ399_04125 PF00535 Glycosyl transferase family 2 HQ399_04140 PF00970 Oxidoreductase FAD-binding domain HQ399_04140 PF00175 Oxidoreductase NAD-binding domain HQ399_04140 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_04155 PF11230 Protein of unknown function (DUF3029) HQ399_04160 PF04055 Radical SAM superfamily HQ399_04170 PF03466 LysR substrate binding domain HQ399_04170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_04175 PF00155 Aminotransferase class I and II HQ399_04180 PF02583 Metal-sensitive transcriptional repressor HQ399_04195 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ399_04195 PF11852 Domain of unknown function (DUF3372) HQ399_04195 PF03714 Bacterial pullanase-associated domain HQ399_04195 PF18494 Pullulanase Ins domain HQ399_04195 PF17967 Pullulanase N2 domain HQ399_04205 PF08534 Redoxin HQ399_04215 PF00271 Helicase conserved C-terminal domain HQ399_04215 PF00270 DEAD/DEAH box helicase HQ399_04225 PF03372 Endonuclease/Exonuclease/phosphatase family HQ399_04245 PF06062 Uncharacterised protein family (UPF0231) HQ399_04250 PF05651 Putative sugar diacid recognition HQ399_04250 PF17853 GGDEF-like domain HQ399_04250 PF13556 PucR C-terminal helix-turn-helix domain HQ399_04255 PF02447 GntP family permease HQ399_04260 PF02595 Glycerate kinase family HQ399_04270 PF00255 Glutathione peroxidase HQ399_04275 PF03466 LysR substrate binding domain HQ399_04275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_04280 PF07670 Nucleoside recognition HQ399_04280 PF01773 Na+ dependent nucleoside transporter N-terminus HQ399_04280 PF07662 Na+ dependent nucleoside transporter C-terminus HQ399_04290 PF02594 Uncharacterised ACR, YggU family COG1872 HQ399_04295 PF02325 YGGT family HQ399_04300 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ399_04300 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ399_04305 PF01168 Alanine racemase, N-terminal domain HQ399_04310 PF00437 Type II/IV secretion system protein HQ399_04315 PF00437 Type II/IV secretion system protein HQ399_04320 PF03883 Peroxide stress protein YaaA HQ399_04330 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ399_04330 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ399_04335 PF00472 RF-1 domain HQ399_04340 PF00543 Nitrogen regulatory protein P-II HQ399_04345 PF13416 Bacterial extracellular solute-binding protein HQ399_04355 PF00005 ABC transporter HQ399_04355 PF08402 TOBE domain HQ399_04360 PF04261 Dyp-type peroxidase family HQ399_04365 PF01316 Arginine repressor, DNA binding domain HQ399_04365 PF02863 Arginine repressor, C-terminal domain HQ399_04370 PF00005 ABC transporter HQ399_04375 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_04380 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04385 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_04390 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ399_04390 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ399_04395 PF08238 Sel1 repeat HQ399_04400 PF00970 Oxidoreductase FAD-binding domain HQ399_04400 PF00042 Globin HQ399_04400 PF00175 Oxidoreductase NAD-binding domain HQ399_04405 PF02082 Transcriptional regulator HQ399_04410 PF03471 Transporter associated domain HQ399_04410 PF00571 CBS domain HQ399_04410 PF01595 Cyclin M transmembrane N-terminal domain HQ399_04415 PF01578 Cytochrome C assembly protein HQ399_04420 PF02978 Signal peptide binding domain HQ399_04420 PF02881 SRP54-type protein, helical bundle domain HQ399_04420 PF00448 SRP54-type protein, GTPase domain HQ399_04425 PF00886 Ribosomal protein S16 HQ399_04430 PF05239 PRC-barrel domain HQ399_04430 PF01782 RimM N-terminal domain HQ399_04435 PF01746 tRNA (Guanine-1)-methyltransferase HQ399_04440 PF01245 Ribosomal protein L19 HQ399_04450 PF02976 DNA mismatch repair enzyme MutH HQ399_04455 PF00293 NUDIX domain HQ399_04460 PF02896 PEP-utilising enzyme, TIM barrel domain HQ399_04460 PF05524 PEP-utilising enzyme, N-terminal HQ399_04460 PF01590 GAF domain HQ399_04460 PF00391 PEP-utilising enzyme, mobile domain HQ399_04465 PF01790 Prolipoprotein diacylglyceryl transferase HQ399_04470 PF00303 Thymidylate synthase HQ399_04475 PF06965 Na+/H+ antiporter 1 HQ399_04485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_04485 PF03466 LysR substrate binding domain HQ399_04490 PF01022 Bacterial regulatory protein, arsR family HQ399_04495 PF01649 Ribosomal protein S20 HQ399_04500 PF03023 Lipid II flippase MurJ HQ399_04505 PF06574 FAD synthetase HQ399_04505 PF01687 Riboflavin kinase HQ399_04510 PF08264 Anticodon-binding domain of tRNA HQ399_04510 PF00133 tRNA synthetases class I (I, L, M and V) HQ399_04510 PF06827 Zinc finger found in FPG and IleRS HQ399_04515 PF01252 Signal peptidase (SPase) II HQ399_04520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_04525 PF02401 LytB protein HQ399_04560 PF07963 Prokaryotic N-terminal methylation motif HQ399_04565 PF00795 Carbon-nitrogen hydrolase HQ399_04565 PF02540 NAD synthase HQ399_04570 PF00543 Nitrogen regulatory protein P-II HQ399_04580 PF02664 S-Ribosylhomocysteinase (LuxS) HQ399_04590 PF07963 Prokaryotic N-terminal methylation motif HQ399_04595 PF01026 TatD related DNase HQ399_04600 PF01773 Na+ dependent nucleoside transporter N-terminus HQ399_04600 PF07670 Nucleoside recognition HQ399_04600 PF07662 Na+ dependent nucleoside transporter C-terminus HQ399_04610 PF01791 DeoC/LacD family aldolase HQ399_04615 PF00591 Glycosyl transferase family, a/b domain HQ399_04615 PF02885 Glycosyl transferase family, helical bundle domain HQ399_04615 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ399_04620 PF01676 Metalloenzyme superfamily HQ399_04625 PF01048 Phosphorylase superfamily HQ399_04635 PF18429 Domain of unknown function (DUF5609) HQ399_04650 PF18073 Rubredoxin metal binding domain HQ399_04655 PF07238 PilZ domain HQ399_04660 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ399_04665 PF00216 Bacterial DNA-binding protein HQ399_04680 PF01566 Natural resistance-associated macrophage protein HQ399_04685 PF01250 Ribosomal protein S6 HQ399_04690 PF01084 Ribosomal protein S18 HQ399_04695 PF03948 Ribosomal protein L9, C-terminal domain HQ399_04695 PF01281 Ribosomal protein L9, N-terminal domain HQ399_04700 PF00175 Oxidoreductase NAD-binding domain HQ399_04700 PF00970 Oxidoreductase FAD-binding domain HQ399_04725 PF00698 Acyl transferase domain HQ399_04725 PF14765 Polyketide synthase dehydratase HQ399_04725 PF00550 Phosphopantetheine attachment site HQ399_04725 PF08659 KR domain HQ399_04725 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_04730 PF09335 SNARE associated Golgi protein HQ399_04735 PF05193 Peptidase M16 inactive domain HQ399_04735 PF00675 Insulinase (Peptidase family M16) HQ399_04740 PF04262 Glutamate-cysteine ligase HQ399_04745 PF00501 AMP-binding enzyme HQ399_04750 PF00583 Acetyltransferase (GNAT) family HQ399_04750 PF13673 Acetyltransferase (GNAT) domain HQ399_04760 PF17868 AAA lid domain HQ399_04760 PF12592 Protein of unknown function (DUF3763) HQ399_04760 PF07728 AAA domain (dynein-related subfamily) HQ399_04765 PF05762 VWA domain containing CoxE-like protein HQ399_04770 PF00072 Response regulator receiver domain HQ399_04770 PF00990 Diguanylate cyclase, GGDEF domain HQ399_04775 PF00009 Elongation factor Tu GTP binding domain HQ399_04775 PF03144 Elongation factor Tu domain 2 HQ399_04775 PF16658 Class II release factor RF3, C-terminal domain HQ399_04780 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_04780 PF12804 MobA-like NTP transferase domain HQ399_04780 PF14602 Hexapeptide repeat of succinyl-transferase HQ399_04785 PF00583 Acetyltransferase (GNAT) family HQ399_04790 PF07690 Major Facilitator Superfamily HQ399_04795 PF03466 LysR substrate binding domain HQ399_04795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_04800 PF01447 Thermolysin metallopeptidase, catalytic domain HQ399_04800 PF03413 Peptidase propeptide and YPEB domain HQ399_04800 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ399_04800 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ399_04800 PF04151 Bacterial pre-peptidase C-terminal domain HQ399_04805 PF13302 Acetyltransferase (GNAT) domain HQ399_04810 PF13302 Acetyltransferase (GNAT) domain HQ399_04820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ399_04820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ399_04825 PF07690 Major Facilitator Superfamily HQ399_04830 PF01725 Ham1 family HQ399_04835 PF04055 Radical SAM superfamily HQ399_04835 PF06969 HemN C-terminal domain HQ399_04840 PF03889 Alternative ribosome-rescue factor A HQ399_04845 PF13411 MerR HTH family regulatory protein HQ399_04850 PF01808 AICARFT/IMPCHase bienzyme HQ399_04850 PF02142 MGS-like domain HQ399_04855 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ399_04855 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ399_04855 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ399_04920 PF08676 MutL C terminal dimerisation domain HQ399_04920 PF01119 DNA mismatch repair protein, C-terminal domain HQ399_04935 PF00140 Sigma-70 factor, region 1.2 HQ399_04935 PF03979 Sigma-70 factor, region 1.1 HQ399_04935 PF04545 Sigma-70, region 4 HQ399_04935 PF04546 Sigma-70, non-essential region HQ399_04935 PF04542 Sigma-70 region 2 HQ399_04935 PF04539 Sigma-70 region 3 HQ399_04940 PF08278 DNA primase DnaG DnaB-binding HQ399_04940 PF01807 CHC2 zinc finger HQ399_04940 PF10410 DnaB-helicase binding domain of primase HQ399_04940 PF08275 DNA primase catalytic core, N-terminal domain HQ399_04945 PF09424 Yqey-like protein HQ399_04950 PF01165 Ribosomal protein S21 HQ399_04955 PF00814 Glycoprotease family HQ399_04960 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ399_04965 PF10415 Fumarase C C-terminus HQ399_04965 PF00206 Lyase HQ399_04970 PF04186 FxsA cytoplasmic membrane protein HQ399_04975 PF01554 MatE HQ399_04980 PF00166 Chaperonin 10 Kd subunit HQ399_04985 PF00118 TCP-1/cpn60 chaperonin family HQ399_04995 PF03707 Bacterial signalling protein N terminal repeat HQ399_04995 PF00563 EAL domain HQ399_04995 PF00990 Diguanylate cyclase, GGDEF domain HQ399_05025 PF02867 Ribonucleotide reductase, barrel domain HQ399_05025 PF00317 Ribonucleotide reductase, all-alpha domain HQ399_05025 PF08343 Ribonucleotide reductase N-terminal HQ399_05035 PF13638 PIN domain HQ399_05035 PF02562 PhoH-like protein HQ399_05040 PF00005 ABC transporter HQ399_05045 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_05065 PF00694 Aconitase C-terminal domain HQ399_05070 PF00330 Aconitase family (aconitate hydratase) HQ399_05075 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ399_05080 PF00682 HMGL-like HQ399_05080 PF08502 LeuA allosteric (dimerisation) domain HQ399_05090 PF01569 PAP2 superfamily HQ399_05105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_05105 PF00205 Thiamine pyrophosphate enzyme, central domain HQ399_05105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ399_05110 PF10369 Small subunit of acetolactate synthase HQ399_05115 PF01810 LysE type translocator HQ399_05120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_05120 PF03466 LysR substrate binding domain HQ399_05125 PF01546 Peptidase family M20/M25/M40 HQ399_05145 PF02954 Bacterial regulatory protein, Fis family HQ399_05150 PF01207 Dihydrouridine synthase (Dus) HQ399_05155 PF02321 Outer membrane efflux protein HQ399_05160 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_05190 PF00072 Response regulator receiver domain HQ399_05195 PF00854 POT family HQ399_05200 PF00483 Nucleotidyl transferase HQ399_05210 PF07085 DRTGG domain HQ399_05210 PF01515 Phosphate acetyl/butaryl transferase HQ399_05215 PF00871 Acetokinase family HQ399_05220 PF04217 Protein of unknown function, DUF412 HQ399_05225 PF03887 YfbU domain HQ399_05230 PF00578 AhpC/TSA family HQ399_05235 PF01842 ACT domain HQ399_05240 PF00701 Dihydrodipicolinate synthetase family HQ399_05245 PF06804 NlpB/DapX lipoprotein HQ399_05250 PF01259 SAICAR synthetase HQ399_05260 PF03466 LysR substrate binding domain HQ399_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_05265 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ399_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_05285 PF00512 His Kinase A (phospho-acceptor) domain HQ399_05285 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ399_05285 PF01627 Hpt domain HQ399_05285 PF00989 PAS fold HQ399_05285 PF00072 Response regulator receiver domain HQ399_05290 PF01966 HD domain HQ399_05290 PF13286 Phosphohydrolase-associated domain HQ399_05300 PF00512 His Kinase A (phospho-acceptor) domain HQ399_05300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_05300 PF00072 Response regulator receiver domain HQ399_05300 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ399_05305 PF03707 Bacterial signalling protein N terminal repeat HQ399_05305 PF00990 Diguanylate cyclase, GGDEF domain HQ399_05305 PF00563 EAL domain HQ399_05310 PF17200 Single Cache domain 2 HQ399_05310 PF00672 HAMP domain HQ399_05310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_05315 PF02357 Transcription termination factor nusG HQ399_05320 PF03180 NLPA lipoprotein HQ399_05325 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_05330 PF00005 ABC transporter HQ399_05330 PF09383 NIL domain HQ399_05340 PF00480 ROK family HQ399_05345 PF08331 Domain of unknown function (DUF1730) HQ399_05350 PF01256 Carbohydrate kinase HQ399_05350 PF03853 YjeF-related protein N-terminus HQ399_05355 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ399_05360 PF01520 N-acetylmuramoyl-L-alanine amidase HQ399_05365 PF01119 DNA mismatch repair protein, C-terminal domain HQ399_05365 PF08676 MutL C terminal dimerisation domain HQ399_05375 PF17209 Hfq protein HQ399_05380 PF01926 50S ribosome-binding GTPase HQ399_05380 PF13167 GTP-binding GTPase N-terminal HQ399_05380 PF16360 GTP-binding GTPase Middle Region HQ399_05385 PF01145 SPFH domain / Band 7 family HQ399_05385 PF12221 Bacterial membrane protein N terminal HQ399_05390 PF01145 SPFH domain / Band 7 family HQ399_05395 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ399_05400 PF00348 Polyprenyl synthetase HQ399_05405 PF00829 Ribosomal prokaryotic L21 protein HQ399_05410 PF01016 Ribosomal L27 protein HQ399_05415 PF01926 50S ribosome-binding GTPase HQ399_05415 PF01018 GTP1/OBG HQ399_05420 PF07670 Nucleoside recognition HQ399_05425 PF00296 Luciferase-like monooxygenase HQ399_05435 PF00149 Calcineurin-like phosphoesterase HQ399_05440 PF04379 ApaG domain HQ399_05445 PF00398 Ribosomal RNA adenine dimethylase HQ399_05450 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ399_05455 PF00639 PPIC-type PPIASE domain HQ399_05455 PF09312 SurA N-terminal domain HQ399_05460 PF04453 LPS transport system D HQ399_05460 PF03968 OstA-like protein HQ399_05465 PF01636 Phosphotransferase enzyme family HQ399_05470 PF00483 Nucleotidyl transferase HQ399_05475 PF00226 DnaJ domain HQ399_05475 PF05099 Tellurite resistance protein TerB HQ399_05480 PF07687 Peptidase dimerisation domain HQ399_05480 PF01546 Peptidase family M20/M25/M40 HQ399_05485 PF01757 Acyltransferase family HQ399_05530 PF07484 Phage Tail Collar Domain HQ399_05650 PF00145 C-5 cytosine-specific DNA methylase HQ399_05655 PF05840 Bacteriophage replication gene A protein (GPA) HQ399_05745 PF02899 Phage integrase, N-terminal SAM-like domain HQ399_05745 PF00589 Phage integrase family HQ399_05750 PF00156 Phosphoribosyl transferase domain HQ399_05755 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) HQ399_05760 PF07417 Sigma factor-binding transcriptional regulator Crl HQ399_05765 PF01472 PUA domain HQ399_05765 PF00696 Amino acid kinase family HQ399_05770 PF00171 Aldehyde dehydrogenase family HQ399_05785 PF09905 DNA-binding protein VF530 HQ399_05790 PF02666 Phosphatidylserine decarboxylase HQ399_05795 PF03193 RsgA GTPase HQ399_05800 PF00929 Exonuclease HQ399_05840 PF00313 'Cold-shock' DNA-binding domain HQ399_05850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_05850 PF00672 HAMP domain HQ399_05855 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ399_05860 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ399_05865 PF00860 Permease family HQ399_05875 PF12848 ABC transporter HQ399_05875 PF00005 ABC transporter HQ399_05890 PF01048 Phosphorylase superfamily HQ399_05895 PF01464 Transglycosylase SLT domain HQ399_05905 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) HQ399_05910 PF01370 NAD dependent epimerase/dehydratase family HQ399_05915 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ399_05915 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ399_05915 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ399_05925 PF00005 ABC transporter HQ399_05925 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_05930 PF00005 ABC transporter HQ399_05930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_05935 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_05935 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_05940 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_05945 PF03734 L,D-transpeptidase catalytic domain HQ399_05945 PF17969 L,D-transpeptidase C-terminal domain HQ399_05950 PF01343 Peptidase family S49 HQ399_05955 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ399_05955 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_05960 PF00881 Nitroreductase family HQ399_05965 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_05965 PF12464 Maltose acetyltransferase HQ399_05970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ399_05970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_05980 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_05980 PF00107 Zinc-binding dehydrogenase HQ399_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_05985 PF03466 LysR substrate binding domain HQ399_05990 PF02378 Phosphotransferase system, EIIC HQ399_05990 PF00367 phosphotransferase system, EIIB HQ399_05990 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ399_05995 PF00474 Sodium:solute symporter family HQ399_06000 PF06196 Protein of unknown function (DUF997) HQ399_06005 PF02785 Biotin carboxylase C-terminal domain HQ399_06005 PF00289 Biotin carboxylase, N-terminal domain HQ399_06005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ399_06010 PF00364 Biotin-requiring enzyme HQ399_06015 PF01220 Dehydroquinase class II HQ399_06020 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ399_06020 PF00501 AMP-binding enzyme HQ399_06020 PF13193 AMP-binding enzyme C-terminal domain HQ399_06030 PF00990 Diguanylate cyclase, GGDEF domain HQ399_06030 PF00563 EAL domain HQ399_06030 PF03707 Bacterial signalling protein N terminal repeat HQ399_06040 PF02613 Nitrate reductase delta subunit HQ399_06055 PF00464 Serine hydroxymethyltransferase HQ399_06065 PF03477 ATP cone domain HQ399_06070 PF01872 RibD C-terminal domain HQ399_06070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ399_06075 PF00677 Lumazine binding domain HQ399_06080 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ399_06080 PF00925 GTP cyclohydrolase II HQ399_06085 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ399_06090 PF01029 NusB family HQ399_06095 PF00586 AIR synthase related protein, N-terminal domain HQ399_06095 PF02769 AIR synthase related protein, C-terminal domain HQ399_06100 PF04608 Phosphatidylglycerophosphatase A HQ399_06105 PF00005 ABC transporter HQ399_06105 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_06110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_06115 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_06120 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_06120 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_06125 PF13292 1-deoxy-D-xylulose-5-phosphate synthase HQ399_06125 PF02780 Transketolase, C-terminal domain HQ399_06125 PF02779 Transketolase, pyrimidine binding domain HQ399_06130 PF00348 Polyprenyl synthetase HQ399_06135 PF02609 Exonuclease VII small subunit HQ399_06140 PF01618 MotA/TolQ/ExbB proton channel family HQ399_06145 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ399_06145 PF00691 OmpA family HQ399_06145 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ399_06145 PF00691 OmpA family HQ399_06150 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ399_06150 PF03449 Transcription elongation factor, N-terminal HQ399_06160 PF01985 CRS1 / YhbY (CRM) domain HQ399_06165 PF01728 FtsJ-like methyltransferase HQ399_06170 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_06170 PF17862 AAA+ lid domain HQ399_06170 PF06480 FtsH Extracellular HQ399_06170 PF01434 Peptidase family M41 HQ399_06175 PF00809 Pterin binding enzyme HQ399_06180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ399_06180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ399_06180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ399_06180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ399_06185 PF00121 Triosephosphate isomerase HQ399_06190 PF03840 Preprotein translocase SecG subunit HQ399_06205 PF02576 RimP N-terminal domain HQ399_06205 PF17384 RimP C-terminal SH3 domain HQ399_06210 PF08529 NusA N-terminal domain HQ399_06210 PF00575 S1 RNA binding domain HQ399_06210 PF13184 NusA-like KH domain HQ399_06215 PF04760 Translation initiation factor IF-2, N-terminal region HQ399_06215 PF00009 Elongation factor Tu GTP binding domain HQ399_06215 PF11987 Translation-initiation factor 2 HQ399_06215 PF08364 Bacterial translation initiation factor IF-2 associated region HQ399_06220 PF02033 Ribosome-binding factor A HQ399_06225 PF09157 Pseudouridine synthase II TruB, C-terminal HQ399_06225 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ399_06225 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ399_06230 PF00312 Ribosomal protein S15 HQ399_06235 PF00575 S1 RNA binding domain HQ399_06235 PF03725 3' exoribonuclease family, domain 2 HQ399_06235 PF00013 KH domain HQ399_06235 PF01138 3' exoribonuclease family, domain 1 HQ399_06235 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ399_06240 PF01339 CheB methylesterase HQ399_06240 PF00072 Response regulator receiver domain HQ399_06245 PF03975 CheD chemotactic sensory transduction HQ399_06250 PF01739 CheR methyltransferase, SAM binding domain HQ399_06250 PF03705 CheR methyltransferase, all-alpha domain HQ399_06255 PF00672 HAMP domain HQ399_06255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_06260 PF01584 CheW-like domain HQ399_06265 PF12729 Four helix bundle sensory module for signal transduction HQ399_06265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_06265 PF00672 HAMP domain HQ399_06270 PF01584 CheW-like domain HQ399_06270 PF02895 Signal transducing histidine kinase, homodimeric domain HQ399_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_06270 PF01627 Hpt domain HQ399_06270 PF07194 P2 response regulator binding domain HQ399_06280 PF00072 Response regulator receiver domain HQ399_06285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_06285 PF02743 Cache domain HQ399_06285 PF00672 HAMP domain HQ399_06290 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ399_06290 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ399_06295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06295 PF03466 LysR substrate binding domain HQ399_06300 PF01810 LysE type translocator HQ399_06305 PF12392 Collagenase HQ399_06305 PF01136 Peptidase family U32 HQ399_06310 PF02872 5'-nucleotidase, C-terminal domain HQ399_06310 PF00149 Calcineurin-like phosphoesterase HQ399_06315 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ399_06315 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ399_06320 PF02805 Metal binding domain of Ada HQ399_06320 PF06029 AlkA N-terminal domain HQ399_06320 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ399_06320 PF12833 Helix-turn-helix domain HQ399_06330 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ399_06355 PF00106 short chain dehydrogenase HQ399_06360 PF03573 outer membrane porin, OprD family HQ399_06365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_06365 PF16591 Helical bimodular sensor domain HQ399_06365 PF00672 HAMP domain HQ399_06395 PF00800 Prephenate dehydratase HQ399_06395 PF01817 Chorismate mutase type II HQ399_06410 PF06508 Queuosine biosynthesis protein QueC HQ399_06425 PF08349 Protein of unknown function (DUF1722) HQ399_06430 PF13411 MerR HTH family regulatory protein HQ399_06435 PF03441 FAD binding domain of DNA photolyase HQ399_06435 PF00875 DNA photolyase HQ399_06445 PF00106 short chain dehydrogenase HQ399_06490 PF02424 ApbE family HQ399_06495 PF00970 Oxidoreductase FAD-binding domain HQ399_06495 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_06495 PF00175 Oxidoreductase NAD-binding domain HQ399_06500 PF02508 Rnf-Nqr subunit, membrane protein HQ399_06505 PF02508 Rnf-Nqr subunit, membrane protein HQ399_06510 PF04205 FMN-binding domain HQ399_06515 PF03116 NQR2, RnfD, RnfE family HQ399_06520 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ399_06520 PF11973 NQRA C-terminal domain HQ399_06525 PF01722 BolA-like protein HQ399_06530 PF05175 Methyltransferase small domain HQ399_06540 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ399_06545 PF07690 Major Facilitator Superfamily HQ399_06550 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ399_06555 PF04461 Protein of unknown function (DUF520) HQ399_06560 PF02558 Ketopantoate reductase PanE/ApbA HQ399_06560 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ399_06565 PF01965 DJ-1/PfpI family HQ399_06575 PF00817 impB/mucB/samB family HQ399_06575 PF11799 impB/mucB/samB family C-terminal domain HQ399_06575 PF11798 IMS family HHH motif HQ399_06580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_06580 PF00672 HAMP domain HQ399_06585 PF03466 LysR substrate binding domain HQ399_06585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06595 PF04241 Protein of unknown function (DUF423) HQ399_06600 PF18125 RlmM ferredoxin-like domain HQ399_06600 PF01728 FtsJ-like methyltransferase HQ399_06610 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ399_06610 PF18324 Hypothetical protein TT1725 HQ399_06615 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ399_06615 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ399_06620 PF11892 Domain of unknown function (DUF3412) HQ399_06620 PF03641 Possible lysine decarboxylase HQ399_06620 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ399_06625 PF00990 Diguanylate cyclase, GGDEF domain HQ399_06635 PF14489 QueF-like protein HQ399_06635 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ399_06640 PF07348 Syd protein (SUKH-2) HQ399_06645 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ399_06670 PF04287 tRNA pseudouridine synthase C HQ399_06675 PF00849 RNA pseudouridylate synthase HQ399_06680 PF00258 Flavodoxin HQ399_06685 PF02264 LamB porin HQ399_06690 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ399_06695 PF00367 phosphotransferase system, EIIB HQ399_06695 PF02378 Phosphotransferase system, EIIC HQ399_06700 PF11944 Protein of unknown function (DUF3461) HQ399_06705 PF14602 Hexapeptide repeat of succinyl-transferase HQ399_06705 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ399_06705 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_06710 PF01842 ACT domain HQ399_06710 PF08335 GlnD PII-uridylyltransferase HQ399_06710 PF01966 HD domain HQ399_06710 PF01909 Nucleotidyltransferase domain HQ399_06715 PF00557 Metallopeptidase family M24 HQ399_06720 PF00318 Ribosomal protein S2 HQ399_06725 PF00889 Elongation factor TS HQ399_06730 PF00696 Amino acid kinase family HQ399_06735 PF01765 Ribosome recycling factor HQ399_06740 PF01255 Putative undecaprenyl diphosphate synthase HQ399_06750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ399_06750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ399_06750 PF13288 DXP reductoisomerase C-terminal domain HQ399_06755 PF02163 Peptidase family M50 HQ399_06755 PF17820 PDZ domain HQ399_06760 PF01103 Surface antigen HQ399_06760 PF07244 Surface antigen variable number repeat HQ399_06765 PF03938 Outer membrane protein (OmpH-like) HQ399_06770 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_06770 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ399_06775 PF07977 FabA-like domain HQ399_06780 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ399_06780 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_06785 PF02684 Lipid-A-disaccharide synthetase HQ399_06790 PF01351 Ribonuclease HII HQ399_06795 PF02811 PHP domain HQ399_06795 PF14579 Helix-hairpin-helix motif HQ399_06795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ399_06795 PF01336 OB-fold nucleic acid binding domain HQ399_06795 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ399_06800 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ399_06810 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ399_06815 PF01235 Sodium:alanine symporter family HQ399_06820 PF11992 Domain of unknown function (DUF3488) HQ399_06820 PF01841 Transglutaminase-like superfamily HQ399_06820 PF13559 Domain of unknown function (DUF4129) HQ399_06830 PF07726 ATPase family associated with various cellular activities (AAA) HQ399_06830 PF17863 AAA lid domain HQ399_06835 PF00144 Beta-lactamase HQ399_06840 PF07690 Major Facilitator Superfamily HQ399_06845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06845 PF03466 LysR substrate binding domain HQ399_06855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06855 PF03466 LysR substrate binding domain HQ399_06860 PF00854 POT family HQ399_06865 PF03652 Holliday junction resolvase HQ399_06870 PF02622 Uncharacterized ACR, COG1678 HQ399_06880 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ399_06880 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ399_06885 PF04452 RNA methyltransferase HQ399_06890 PF04231 Endonuclease I HQ399_06895 PF17283 SprT-like zinc ribbon domain HQ399_06895 PF10263 SprT-like family HQ399_06900 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ399_06900 PF02772 S-adenosylmethionine synthetase, central domain HQ399_06900 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ399_06905 PF00456 Transketolase, thiamine diphosphate binding domain HQ399_06905 PF02779 Transketolase, pyrimidine binding domain HQ399_06905 PF02780 Transketolase, C-terminal domain HQ399_06915 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_06915 PF00107 Zinc-binding dehydrogenase HQ399_06920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06920 PF03466 LysR substrate binding domain HQ399_06925 PF01965 DJ-1/PfpI family HQ399_06935 PF01042 Endoribonuclease L-PSP HQ399_06945 PF03702 Anhydro-N-acetylmuramic acid kinase HQ399_06950 PF08525 Opacity-associated protein A N-terminal motif HQ399_06950 PF01551 Peptidase family M23 HQ399_06950 PF01476 LysM domain HQ399_06955 PF00579 tRNA synthetases class I (W and Y) HQ399_06960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06960 PF03466 LysR substrate binding domain HQ399_06965 PF03306 Alpha-acetolactate decarboxylase HQ399_06970 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_06970 PF00205 Thiamine pyrophosphate enzyme, central domain HQ399_06970 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ399_06980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_06980 PF03466 LysR substrate binding domain HQ399_06995 PF12706 Beta-lactamase superfamily domain HQ399_07000 PF03466 LysR substrate binding domain HQ399_07000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_07005 PF13520 Amino acid permease HQ399_07010 PF13302 Acetyltransferase (GNAT) domain HQ399_07015 PF12848 ABC transporter HQ399_07015 PF00005 ABC transporter HQ399_07020 PF18500 CadC C-terminal domain 1 HQ399_07020 PF00486 Transcriptional regulatory protein, C terminal HQ399_07030 PF13520 Amino acid permease HQ399_07035 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ399_07035 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ399_07035 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ399_07040 PF08543 Phosphomethylpyrimidine kinase HQ399_07050 PF01431 Peptidase family M13 HQ399_07050 PF05649 Peptidase family M13 HQ399_07060 PF00990 Diguanylate cyclase, GGDEF domain HQ399_07065 PF02254 TrkA-N domain HQ399_07065 PF00999 Sodium/hydrogen exchanger family HQ399_07065 PF02080 TrkA-C domain HQ399_07085 PF00196 Bacterial regulatory proteins, luxR family HQ399_07085 PF00072 Response regulator receiver domain HQ399_07095 PF00128 Alpha amylase, catalytic domain HQ399_07110 PF00535 Glycosyl transferase family 2 HQ399_07125 PF01471 Putative peptidoglycan binding domain HQ399_07125 PF03734 L,D-transpeptidase catalytic domain HQ399_07130 PF05951 Bacterial protein of unknown function (DUF882) HQ399_07140 PF03458 UPF0126 domain HQ399_07150 PF02463 RecF/RecN/SMC N terminal domain HQ399_07150 PF06470 SMC proteins Flexible Hinge Domain HQ399_07155 PF04354 ZipA, C-terminal FtsZ-binding domain HQ399_07165 PF03120 NAD-dependent DNA ligase OB-fold domain HQ399_07165 PF00533 BRCA1 C Terminus (BRCT) domain HQ399_07165 PF01653 NAD-dependent DNA ligase adenylation domain HQ399_07225 PF00892 EamA-like transporter family HQ399_07230 PF00884 Sulfatase HQ399_07230 PF08019 Phosphoethanolamine transferase EptA/EptB HQ399_07235 PF08019 Phosphoethanolamine transferase EptA/EptB HQ399_07235 PF00884 Sulfatase HQ399_07240 PF01219 Prokaryotic diacylglycerol kinase HQ399_07245 PF09722 Protein of unknown function (DUF2384) HQ399_07260 PF00816 H-NS histone family HQ399_07335 PF03477 ATP cone domain HQ399_07335 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ399_07365 PF00529 HlyD membrane-fusion protein of T1SS HQ399_07365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_07370 PF01047 MarR family HQ399_07380 PF03390 2-hydroxycarboxylate transporter family HQ399_07385 PF03949 Malic enzyme, NAD binding domain HQ399_07385 PF00390 Malic enzyme, N-terminal domain HQ399_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_07390 PF00989 PAS fold HQ399_07390 PF17203 Single cache domain 3 HQ399_07390 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain HQ399_07395 PF12431 Transcriptional regulator HQ399_07395 PF00072 Response regulator receiver domain HQ399_07400 PF00892 EamA-like transporter family HQ399_07410 PF00990 Diguanylate cyclase, GGDEF domain HQ399_07410 PF17158 Membrane-associated sensor, integral membrane domain HQ399_07415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ399_07420 PF00486 Transcriptional regulatory protein, C terminal HQ399_07420 PF00072 Response regulator receiver domain HQ399_07425 PF00989 PAS fold HQ399_07425 PF00512 His Kinase A (phospho-acceptor) domain HQ399_07425 PF11808 Phosphate regulon sensor protein PhoR HQ399_07425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_07430 PF12849 PBP superfamily domain HQ399_07435 PF01435 Peptidase family M48 HQ399_07445 PF00480 ROK family HQ399_07450 PF03932 CutC family HQ399_07455 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ399_07455 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_07470 PF00293 NUDIX domain HQ399_07480 PF08534 Redoxin HQ399_07480 PF00462 Glutaredoxin HQ399_07485 PF01699 Sodium/calcium exchanger protein HQ399_07490 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ399_07490 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ399_07495 PF01235 Sodium:alanine symporter family HQ399_07500 PF00860 Permease family HQ399_07505 PF00990 Diguanylate cyclase, GGDEF domain HQ399_07510 PF10692 Protein of unknown function (DUF2498) HQ399_07515 PF01554 MatE HQ399_07520 PF12833 Helix-turn-helix domain HQ399_07525 PF03949 Malic enzyme, NAD binding domain HQ399_07525 PF00390 Malic enzyme, N-terminal domain HQ399_07535 PF00691 OmpA family HQ399_07535 PF01389 OmpA-like transmembrane domain HQ399_07540 PF00691 OmpA family HQ399_07540 PF01389 OmpA-like transmembrane domain HQ399_07555 PF13520 Amino acid permease HQ399_07560 PF01734 Patatin-like phospholipase HQ399_07565 PF17158 Membrane-associated sensor, integral membrane domain HQ399_07565 PF00990 Diguanylate cyclase, GGDEF domain HQ399_07570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_07570 PF00529 HlyD membrane-fusion protein of T1SS HQ399_07575 PF00873 AcrB/AcrD/AcrF family HQ399_07580 PF08497 Radical SAM N-terminal HQ399_07580 PF11842 Domain of unknown function (DUF3362) HQ399_07580 PF04055 Radical SAM superfamily HQ399_07595 PF04151 Bacterial pre-peptidase C-terminal domain HQ399_07595 PF04389 Peptidase family M28 HQ399_07610 PF03466 LysR substrate binding domain HQ399_07610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_07620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ399_07625 PF04358 DsrC like protein HQ399_07630 PF12805 FUSC-like inner membrane protein yccS HQ399_07635 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ399_07645 PF08220 DeoR-like helix-turn-helix domain HQ399_07645 PF00455 DeoR C terminal sensor domain HQ399_07650 PF01261 Xylose isomerase-like TIM barrel HQ399_07665 PF03611 PTS system sugar-specific permease component HQ399_07670 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_07675 PF00596 Class II Aldolase and Adducin N-terminal domain HQ399_07680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ399_07685 PF01203 Type II secretion system (T2SS), protein N HQ399_07690 PF04612 Type II secretion system (T2SS), protein M HQ399_07695 PF05134 Type II secretion system (T2SS), protein L HQ399_07695 PF12693 GspL periplasmic domain HQ399_07700 PF03934 Type II secretion system (T2SS), protein K HQ399_07705 PF11612 Type II secretion system (T2SS), protein J HQ399_07705 PF07963 Prokaryotic N-terminal methylation motif HQ399_07710 PF02501 Type II secretion system (T2SS), protein I HQ399_07710 PF07963 Prokaryotic N-terminal methylation motif HQ399_07715 PF07963 Prokaryotic N-terminal methylation motif HQ399_07715 PF12019 Type II transport protein GspH HQ399_07720 PF08334 Type II secretion system (T2SS), protein G HQ399_07720 PF07963 Prokaryotic N-terminal methylation motif HQ399_07725 PF00482 Type II secretion system (T2SS), protein F HQ399_07730 PF00437 Type II/IV secretion system protein HQ399_07735 PF00263 Bacterial type II and III secretion system protein HQ399_07735 PF03958 Bacterial type II/III secretion system short domain HQ399_07740 PF11356 Type II secretion system protein C HQ399_07745 PF16537 Type II secretion system protein B HQ399_07750 PF01471 Putative peptidoglycan binding domain HQ399_07750 PF13401 AAA domain HQ399_07755 PF00672 HAMP domain HQ399_07755 PF01966 HD domain HQ399_07760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ399_07760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ399_07770 PF17862 AAA+ lid domain HQ399_07770 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_07770 PF01434 Peptidase family M41 HQ399_07775 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_07780 PF00381 PTS HPr component phosphorylation site HQ399_07785 PF05524 PEP-utilising enzyme, N-terminal HQ399_07785 PF00391 PEP-utilising enzyme, mobile domain HQ399_07785 PF02896 PEP-utilising enzyme, TIM barrel domain HQ399_07790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ399_07795 PF08448 PAS fold HQ399_07795 PF00990 Diguanylate cyclase, GGDEF domain HQ399_07800 PF12795 Mechanosensitive ion channel porin domain HQ399_07800 PF00924 Mechanosensitive ion channel HQ399_07800 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ399_07805 PF02887 Pyruvate kinase, alpha/beta domain HQ399_07805 PF00224 Pyruvate kinase, barrel domain HQ399_07815 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ399_07820 PF13476 AAA domain HQ399_07825 PF12320 Type 5 capsule protein repressor C-terminal domain HQ399_07825 PF00149 Calcineurin-like phosphoesterase HQ399_07835 PF04381 Putative exonuclease, RdgC HQ399_07840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_07840 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ399_07845 PF02690 Na+/Pi-cotransporter HQ399_07855 PF00324 Amino acid permease HQ399_07865 PF00324 Amino acid permease HQ399_07870 PF00202 Aminotransferase class-III HQ399_07875 PF00171 Aldehyde dehydrogenase family HQ399_07880 PF01381 Helix-turn-helix HQ399_07880 PF07883 Cupin domain HQ399_07885 PF01266 FAD dependent oxidoreductase HQ399_07910 PF05656 Protein of unknown function (DUF805) HQ399_07925 PF00072 Response regulator receiver domain HQ399_07925 PF00486 Transcriptional regulatory protein, C terminal HQ399_07940 PF01980 tRNA-methyltransferase O HQ399_07940 PF18389 TrmO C-terminal domain HQ399_07960 PF00664 ABC transporter transmembrane region HQ399_07960 PF00005 ABC transporter HQ399_07965 PF00664 ABC transporter transmembrane region HQ399_07965 PF00005 ABC transporter HQ399_07980 PF00486 Transcriptional regulatory protein, C terminal HQ399_07980 PF00072 Response regulator receiver domain HQ399_07990 PF03737 Aldolase/RraA HQ399_08005 PF01022 Bacterial regulatory protein, arsR family HQ399_08010 PF06953 Arsenical resistance operon trans-acting repressor ArsD HQ399_08015 PF02374 Anion-transporting ATPase HQ399_08020 PF01758 Sodium Bile acid symporter family HQ399_08025 PF03960 ArsC family HQ399_08030 PF07670 Nucleoside recognition HQ399_08030 PF07662 Na+ dependent nucleoside transporter C-terminus HQ399_08030 PF01773 Na+ dependent nucleoside transporter N-terminus HQ399_08045 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ399_08090 PF00290 Tryptophan synthase alpha chain HQ399_08095 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_08100 PF00218 Indole-3-glycerol phosphate synthase HQ399_08100 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ399_08105 PF02885 Glycosyl transferase family, helical bundle domain HQ399_08105 PF00591 Glycosyl transferase family, a/b domain HQ399_08110 PF00591 Glycosyl transferase family, a/b domain HQ399_08110 PF02885 Glycosyl transferase family, helical bundle domain HQ399_08110 PF00117 Glutamine amidotransferase class-I HQ399_08115 PF04715 Anthranilate synthase component I, N terminal region HQ399_08115 PF00425 chorismate binding enzyme HQ399_08120 PF02811 PHP domain HQ399_08125 PF01300 Telomere recombination HQ399_08130 PF02616 Segregation and condensation protein ScpA HQ399_08135 PF04079 Segregation and condensation complex subunit ScpB HQ399_08140 PF01479 S4 domain HQ399_08140 PF00849 RNA pseudouridylate synthase HQ399_08165 PF02641 Uncharacterized ACR, COG1993 HQ399_08170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HQ399_08185 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) HQ399_08190 PF00588 SpoU rRNA Methylase family HQ399_08195 PF00742 Homoserine dehydrogenase HQ399_08195 PF03447 Homoserine dehydrogenase, NAD binding domain HQ399_08195 PF00696 Amino acid kinase family HQ399_08195 PF13840 ACT domain HQ399_08195 PF01842 ACT domain HQ399_08200 PF00288 GHMP kinases N terminal domain HQ399_08200 PF08544 GHMP kinases C terminal HQ399_08205 PF14821 Threonine synthase N terminus HQ399_08205 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_08215 PF01797 Transposase IS200 like HQ399_08230 PF00919 Uncharacterized protein family UPF0004 HQ399_08230 PF18693 TRAM domain HQ399_08230 PF04055 Radical SAM superfamily HQ399_08235 PF00072 Response regulator receiver domain HQ399_08255 PF00440 Bacterial regulatory proteins, tetR family HQ399_08255 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ399_08260 PF00529 HlyD membrane-fusion protein of T1SS HQ399_08260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_08265 PF00873 AcrB/AcrD/AcrF family HQ399_08300 PF00534 Glycosyl transferases group 1 HQ399_08305 PF08485 Polysaccharide biosynthesis protein C-terminal HQ399_08305 PF02719 Polysaccharide biosynthesis protein HQ399_08315 PF02350 UDP-N-acetylglucosamine 2-epimerase HQ399_08330 PF08241 Methyltransferase domain HQ399_08350 PF00535 Glycosyl transferase family 2 HQ399_08365 PF01370 NAD dependent epimerase/dehydratase family HQ399_08370 PF02397 Bacterial sugar transferase HQ399_08375 PF02719 Polysaccharide biosynthesis protein HQ399_08380 PF16363 GDP-mannose 4,6 dehydratase HQ399_08385 PF04321 RmlD substrate binding domain HQ399_08390 PF00483 Nucleotidyl transferase HQ399_08395 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ399_08410 PF00816 H-NS histone family HQ399_08415 PF02321 Outer membrane efflux protein HQ399_08420 PF00005 ABC transporter HQ399_08420 PF02687 FtsX-like permease family HQ399_08420 PF12704 MacB-like periplasmic core domain HQ399_08425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_08430 PF01368 DHH family HQ399_08430 PF02833 DHHA2 domain HQ399_08435 PF02463 RecF/RecN/SMC N terminal domain HQ399_08440 PF01513 ATP-NAD kinase HQ399_08445 PF01025 GrpE HQ399_08450 PF00012 Hsp70 protein HQ399_08455 PF01556 DnaJ C terminal domain HQ399_08455 PF00684 DnaJ central domain HQ399_08455 PF00226 DnaJ domain HQ399_08460 PF02308 MgtC family HQ399_08480 PF04143 Sulphur transport HQ399_08495 PF00873 AcrB/AcrD/AcrF family HQ399_08500 PF00563 EAL domain HQ399_08500 PF00990 Diguanylate cyclase, GGDEF domain HQ399_08500 PF13426 PAS domain HQ399_08505 PF10437 Bacterial lipoate protein ligase C-terminus HQ399_08505 PF03099 Biotin/lipoate A/B protein ligase family HQ399_08515 PF13460 NAD(P)H-binding HQ399_08520 PF04355 SmpA / OmlA family HQ399_08525 PF00465 Iron-containing alcohol dehydrogenase HQ399_08530 PF01048 Phosphorylase superfamily HQ399_08535 PF00849 RNA pseudouridylate synthase HQ399_08540 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ399_08555 PF07509 Protein of unknown function (DUF1523) HQ399_08560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_08560 PF12729 Four helix bundle sensory module for signal transduction HQ399_08560 PF00672 HAMP domain HQ399_08565 PF01810 LysE type translocator HQ399_08570 PF03471 Transporter associated domain HQ399_08570 PF00999 Sodium/hydrogen exchanger family HQ399_08570 PF02080 TrkA-C domain HQ399_08580 PF00999 Sodium/hydrogen exchanger family HQ399_08580 PF02080 TrkA-C domain HQ399_08580 PF03471 Transporter associated domain HQ399_08590 PF02557 D-alanyl-D-alanine carboxypeptidase HQ399_08595 PF07687 Peptidase dimerisation domain HQ399_08595 PF01546 Peptidase family M20/M25/M40 HQ399_08600 PF03960 ArsC family HQ399_08610 PF03606 C4-dicarboxylate anaerobic carrier HQ399_08615 PF07687 Peptidase dimerisation domain HQ399_08615 PF01546 Peptidase family M20/M25/M40 HQ399_08625 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ399_08635 PF01336 OB-fold nucleic acid binding domain HQ399_08635 PF00152 tRNA synthetases class II (D, K and N) HQ399_08650 PF00202 Aminotransferase class-III HQ399_08655 PF04055 Radical SAM superfamily HQ399_08655 PF06968 Biotin and Thiamin Synthesis associated domain HQ399_08660 PF00155 Aminotransferase class I and II HQ399_08665 PF08241 Methyltransferase domain HQ399_08665 PF12697 Alpha/beta hydrolase family HQ399_08675 PF01435 Peptidase family M48 HQ399_08680 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_08680 PF03473 MOSC domain HQ399_08680 PF03476 MOSC N-terminal beta barrel domain HQ399_08680 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_08680 PF03476 MOSC N-terminal beta barrel domain HQ399_08680 PF03473 MOSC domain HQ399_08685 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_08685 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ399_08685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ399_08690 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ399_08690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_08690 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ399_08690 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ399_08690 PF10371 Domain of unknown function HQ399_08700 PF01370 NAD dependent epimerase/dehydratase family HQ399_08705 PF03061 Thioesterase superfamily HQ399_08715 PF03372 Endonuclease/Exonuclease/phosphatase family HQ399_08720 PF00462 Glutaredoxin HQ399_08725 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family HQ399_08730 PF00271 Helicase conserved C-terminal domain HQ399_08730 PF04851 Type III restriction enzyme, res subunit HQ399_08735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_08735 PF00529 HlyD membrane-fusion protein of T1SS HQ399_08740 PF11742 Protein of unknown function (DUF3302) HQ399_08745 PF02554 Carbon starvation protein CstA HQ399_08750 PF04397 LytTr DNA-binding domain HQ399_08750 PF00072 Response regulator receiver domain HQ399_08755 PF07694 5TMR of 5TMR-LYT HQ399_08755 PF06580 Histidine kinase HQ399_08760 PF01966 HD domain HQ399_08765 PF08019 Phosphoethanolamine transferase EptA/EptB HQ399_08765 PF00884 Sulfatase HQ399_08770 PF01047 MarR family HQ399_08770 PF00480 ROK family HQ399_08775 PF01979 Amidohydrolase family HQ399_08780 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ399_08785 PF02378 Phosphotransferase system, EIIC HQ399_08785 PF00367 phosphotransferase system, EIIB HQ399_08785 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ399_08790 PF03173 Putative carbohydrate binding domain HQ399_08790 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ399_08790 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ399_08790 PF02838 Glycosyl hydrolase family 20, domain 2 HQ399_08795 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ399_08795 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ399_08800 PF01475 Ferric uptake regulator family HQ399_08810 PF00258 Flavodoxin HQ399_08815 PF01402 Ribbon-helix-helix protein, copG family HQ399_08825 PF12697 Alpha/beta hydrolase family HQ399_08830 PF03925 SeqA protein C-terminal domain HQ399_08830 PF17206 SeqA protein N-terminal domain HQ399_08835 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ399_08835 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ399_08835 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ399_08835 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ399_08840 PF13406 Transglycosylase SLT domain HQ399_08845 PF01066 CDP-alcohol phosphatidyltransferase HQ399_08850 PF00005 ABC transporter HQ399_08855 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_08860 PF13416 Bacterial extracellular solute-binding protein HQ399_08865 PF00403 Heavy-metal-associated domain HQ399_08865 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_08865 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ399_08870 PF02627 Carboxymuconolactone decarboxylase family HQ399_08890 PF01103 Surface antigen HQ399_08890 PF07244 Surface antigen variable number repeat HQ399_08890 PF17243 POTRA domain TamA domain 1 HQ399_08895 PF04357 TamB, inner membrane protein subunit of TAM complex HQ399_08915 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ399_08920 PF00563 EAL domain HQ399_08920 PF00990 Diguanylate cyclase, GGDEF domain HQ399_08920 PF03707 Bacterial signalling protein N terminal repeat HQ399_08925 PF14718 Soluble lytic murein transglycosylase L domain HQ399_08925 PF01464 Transglycosylase SLT domain HQ399_08930 PF00356 Bacterial regulatory proteins, lacI family HQ399_08935 PF00793 DAHP synthetase I family HQ399_08940 PF00593 TonB dependent receptor HQ399_08940 PF07715 TonB-dependent Receptor Plug Domain HQ399_08945 PF00425 chorismate binding enzyme HQ399_08950 PF00501 AMP-binding enzyme HQ399_08950 PF13193 AMP-binding enzyme C-terminal domain HQ399_08955 PF00857 Isochorismatase family HQ399_08955 PF00550 Phosphopantetheine attachment site HQ399_08965 PF00975 Thioesterase domain HQ399_08965 PF00501 AMP-binding enzyme HQ399_08965 PF00668 Condensation domain HQ399_08965 PF00550 Phosphopantetheine attachment site HQ399_08975 PF00676 Dehydrogenase E1 component HQ399_08980 PF02779 Transketolase, pyrimidine binding domain HQ399_08980 PF02780 Transketolase, C-terminal domain HQ399_08985 PF02817 e3 binding domain HQ399_08985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ399_08985 PF00364 Biotin-requiring enzyme HQ399_08990 PF00313 'Cold-shock' DNA-binding domain HQ399_09015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_09020 PF00892 EamA-like transporter family HQ399_09025 PF08220 DeoR-like helix-turn-helix domain HQ399_09025 PF00455 DeoR C terminal sensor domain HQ399_09030 PF01228 Glycine radical HQ399_09030 PF02901 Pyruvate formate lyase-like HQ399_09035 PF04055 Radical SAM superfamily HQ399_09040 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ399_09050 PF11871 Domain of unknown function (DUF3391) HQ399_09050 PF01966 HD domain HQ399_09055 PF00849 RNA pseudouridylate synthase HQ399_09055 PF01479 S4 domain HQ399_09065 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_09070 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ399_09085 PF13144 Chaperone for flagella basal body P-ring formation HQ399_09090 PF01584 CheW-like domain HQ399_09090 PF00072 Response regulator receiver domain HQ399_09095 PF01739 CheR methyltransferase, SAM binding domain HQ399_09095 PF03705 CheR methyltransferase, all-alpha domain HQ399_09100 PF00460 Flagella basal body rod protein HQ399_09105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_09105 PF00460 Flagella basal body rod protein HQ399_09110 PF13861 FlgD Tudor-like domain HQ399_09110 PF13860 FlgD Ig-like domain HQ399_09110 PF03963 Flagellar hook capping protein - N-terminal region HQ399_09115 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_09115 PF00460 Flagella basal body rod protein HQ399_09115 PF07559 Flagellar basal body protein FlaE HQ399_09120 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_09120 PF00460 Flagella basal body rod protein HQ399_09125 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_09125 PF00460 Flagella basal body rod protein HQ399_09130 PF02107 Flagellar L-ring protein HQ399_09135 PF02119 Flagellar P-ring protein HQ399_09140 PF10135 Rod binding protein HQ399_09140 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HQ399_09145 PF07196 Flagellin hook IN motif HQ399_09145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_09150 PF00669 Bacterial flagellin N-terminal helical region HQ399_09155 PF00571 CBS domain HQ399_09155 PF01769 Divalent cation transporter HQ399_09155 PF03448 MgtE intracellular N domain HQ399_09160 PF02541 Ppx/GppA phosphatase family HQ399_09165 PF13089 Polyphosphate kinase N-terminal domain HQ399_09165 PF17941 Polyphosphate kinase C-terminal domain 1 HQ399_09165 PF13090 Polyphosphate kinase C-terminal domain 2 HQ399_09165 PF02503 Polyphosphate kinase middle domain HQ399_09170 PF01842 ACT domain HQ399_09180 PF00158 Sigma-54 interaction domain HQ399_09180 PF02954 Bacterial regulatory protein, Fis family HQ399_09180 PF06490 Flagellar regulatory protein FleQ HQ399_09185 PF00512 His Kinase A (phospho-acceptor) domain HQ399_09185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_09185 PF13188 PAS domain HQ399_09190 PF00158 Sigma-54 interaction domain HQ399_09190 PF00072 Response regulator receiver domain HQ399_09190 PF02954 Bacterial regulatory protein, Fis family HQ399_09195 PF01784 NIF3 (NGG1p interacting factor 3) HQ399_09200 PF00551 Formyl transferase HQ399_09205 PF02769 AIR synthase related protein, C-terminal domain HQ399_09205 PF00586 AIR synthase related protein, N-terminal domain HQ399_09220 PF00308 Bacterial dnaA protein HQ399_09225 PF00463 Isocitrate lyase family HQ399_09230 PF01274 Malate synthase HQ399_09250 PF14437 MafB19-like deaminase HQ399_09255 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09260 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09265 PF00005 ABC transporter HQ399_09270 PF01895 PhoU domain HQ399_09275 PF01595 Cyclin M transmembrane N-terminal domain HQ399_09275 PF03471 Transporter associated domain HQ399_09275 PF00571 CBS domain HQ399_09285 PF02574 Homocysteine S-methyltransferase HQ399_09285 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ399_09285 PF02607 B12 binding domain HQ399_09285 PF02310 B12 binding domain HQ399_09285 PF00809 Pterin binding enzyme HQ399_09290 PF13520 Amino acid permease HQ399_09295 PF04116 Fatty acid hydroxylase superfamily HQ399_09305 PF00005 ABC transporter HQ399_09310 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09315 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_09320 PF08448 PAS fold HQ399_09320 PF00990 Diguanylate cyclase, GGDEF domain HQ399_09325 PF07690 Major Facilitator Superfamily HQ399_09330 PF05231 MASE1 HQ399_09330 PF07730 Histidine kinase HQ399_09330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_09340 PF14760 Rnk N-terminus HQ399_09340 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ399_09355 PF00245 Alkaline phosphatase HQ399_09360 PF00245 Alkaline phosphatase HQ399_09365 PF01926 50S ribosome-binding GTPase HQ399_09370 PF07690 Major Facilitator Superfamily HQ399_09375 PF00850 Histone deacetylase domain HQ399_09385 PF06733 DEAD_2 HQ399_09385 PF13307 Helicase C-terminal domain HQ399_09395 PF01817 Chorismate mutase type II HQ399_09395 PF02153 Prephenate dehydrogenase HQ399_09400 PF00793 DAHP synthetase I family HQ399_09405 PF00483 Nucleotidyl transferase HQ399_09410 PF02355 Protein export membrane protein HQ399_09410 PF07549 SecD/SecF GG Motif HQ399_09415 PF02355 Protein export membrane protein HQ399_09415 PF13721 SecD export protein N-terminal TM region HQ399_09415 PF07549 SecD/SecF GG Motif HQ399_09450 PF01230 HIT domain HQ399_09455 PF00672 HAMP domain HQ399_09455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_09465 PF01979 Amidohydrolase family HQ399_09480 PF00375 Sodium:dicarboxylate symporter family HQ399_09490 PF05661 Protein of unknown function (DUF808) HQ399_09495 PF08439 Oligopeptidase F HQ399_09495 PF01432 Peptidase family M3 HQ399_09500 PF00860 Permease family HQ399_09505 PF05728 Uncharacterised protein family (UPF0227) HQ399_09510 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_09520 PF04055 Radical SAM superfamily HQ399_09525 PF00990 Diguanylate cyclase, GGDEF domain HQ399_09525 PF03707 Bacterial signalling protein N terminal repeat HQ399_09525 PF00563 EAL domain HQ399_09530 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ399_09530 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_09540 PF17962 Bacterial macroglobulin domain 6 HQ399_09540 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HQ399_09540 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HQ399_09540 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HQ399_09540 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HQ399_09540 PF07703 Alpha-2-macroglobulin bait region domain HQ399_09540 PF00207 Alpha-2-macroglobulin family HQ399_09540 PF07678 A-macroglobulin TED domain HQ399_09540 PF01835 MG2 domain HQ399_09545 PF06832 Penicillin-Binding Protein C-terminus Family HQ399_09545 PF00912 Transglycosylase HQ399_09545 PF00905 Penicillin binding protein transpeptidase domain HQ399_09555 PF02926 THUMP domain HQ399_09555 PF02568 Thiamine biosynthesis protein (ThiI) HQ399_09565 PF03458 UPF0126 domain HQ399_09570 PF00669 Bacterial flagellin N-terminal helical region HQ399_09570 PF07196 Flagellin hook IN motif HQ399_09570 PF00700 Bacterial flagellin C-terminal helical region HQ399_09575 PF00669 Bacterial flagellin N-terminal helical region HQ399_09575 PF07196 Flagellin hook IN motif HQ399_09575 PF00700 Bacterial flagellin C-terminal helical region HQ399_09580 PF00700 Bacterial flagellin C-terminal helical region HQ399_09580 PF07196 Flagellin hook IN motif HQ399_09580 PF00669 Bacterial flagellin N-terminal helical region HQ399_09590 PF02465 Flagellar hook-associated protein 2 N-terminus HQ399_09590 PF07196 Flagellin hook IN motif HQ399_09590 PF07195 Flagellar hook-associated protein 2 C-terminus HQ399_09595 PF02561 Flagellar protein FliS HQ399_09615 PF03102 NeuB family HQ399_09615 PF08666 SAF domain HQ399_09630 PF13419 Haloacid dehalogenase-like hydrolase HQ399_09635 PF00202 Aminotransferase class-III HQ399_09640 PF02348 Cytidylyltransferase HQ399_09650 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ399_09655 PF02719 Polysaccharide biosynthesis protein HQ399_09660 PF01497 Periplasmic binding protein HQ399_09670 PF01048 Phosphorylase superfamily HQ399_09675 PF02535 ZIP Zinc transporter HQ399_09680 PF00672 HAMP domain HQ399_09680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_09685 PF00459 Inositol monophosphatase family HQ399_09695 PF02798 Glutathione S-transferase, N-terminal domain HQ399_09695 PF00043 Glutathione S-transferase, C-terminal domain HQ399_09700 PF07690 Major Facilitator Superfamily HQ399_09705 PF03466 LysR substrate binding domain HQ399_09705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_09710 PF02634 FdhD/NarQ family HQ399_09715 PF00384 Molybdopterin oxidoreductase HQ399_09725 PF05164 Cell division protein ZapA HQ399_09730 PF03695 Uncharacterised protein family (UPF0149) HQ399_09735 PF01494 FAD binding domain HQ399_09740 PF01494 FAD binding domain HQ399_09745 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ399_09745 PF01571 Aminomethyltransferase folate-binding domain HQ399_09750 PF01597 Glycine cleavage H-protein HQ399_09755 PF02347 Glycine cleavage system P-protein HQ399_09760 PF08447 PAS fold HQ399_09760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_09765 PF13419 Haloacid dehalogenase-like hydrolase HQ399_09780 PF00324 Amino acid permease HQ399_09790 PF03618 Kinase/pyrophosphorylase HQ399_09795 PF00391 PEP-utilising enzyme, mobile domain HQ399_09795 PF02896 PEP-utilising enzyme, TIM barrel domain HQ399_09795 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain HQ399_09805 PF00082 Subtilase family HQ399_09805 PF01483 Proprotein convertase P-domain HQ399_09815 PF03180 NLPA lipoprotein HQ399_09820 PF11893 Domain of unknown function (DUF3413) HQ399_09820 PF00884 Sulfatase HQ399_09825 PF07208 Protein of unknown function (DUF1414) HQ399_09830 PF04245 37-kD nucleoid-associated bacterial protein HQ399_09835 PF01547 Bacterial extracellular solute-binding protein HQ399_09840 PF14785 Maltose transport system permease protein MalF P2 domain HQ399_09840 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09845 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09850 PF08402 TOBE domain HQ399_09850 PF00005 ABC transporter HQ399_09855 PF03976 Polyphosphate kinase 2 (PPK2) HQ399_09860 PF00561 alpha/beta hydrolase fold HQ399_09870 PF01594 AI-2E family transporter HQ399_09875 PF01206 Sulfurtransferase TusA HQ399_09880 PF01435 Peptidase family M48 HQ399_09880 PF07720 Tetratricopeptide repeat HQ399_09885 PF00578 AhpC/TSA family HQ399_09890 PF03960 ArsC family HQ399_09900 PF04336 Acyl carrier protein phosphodiesterase HQ399_09905 PF01979 Amidohydrolase family HQ399_09910 PF03956 Lysine exporter LysO HQ399_09915 PF00005 ABC transporter HQ399_09925 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09930 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_09935 PF00849 RNA pseudouridylate synthase HQ399_09945 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ399_09950 PF04209 homogentisate 1,2-dioxygenase HQ399_09960 PF14497 Glutathione S-transferase, C-terminal domain HQ399_09960 PF02798 Glutathione S-transferase, N-terminal domain HQ399_09970 PF00733 Asparagine synthase HQ399_09970 PF13537 Glutamine amidotransferase domain HQ399_09980 PF00999 Sodium/hydrogen exchanger family HQ399_09980 PF02254 TrkA-N domain HQ399_09985 PF13344 Haloacid dehalogenase-like hydrolase HQ399_09990 PF00962 Adenosine/AMP deaminase HQ399_09995 PF00107 Zinc-binding dehydrogenase HQ399_09995 PF08240 Alcohol dehydrogenase GroES-like domain HQ399_10000 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ399_10005 PF03471 Transporter associated domain HQ399_10005 PF03741 Integral membrane protein TerC family HQ399_10015 PF02913 FAD linked oxidases, C-terminal domain HQ399_10015 PF01565 FAD binding domain HQ399_10015 PF13183 4Fe-4S dicluster domain HQ399_10025 PF03061 Thioesterase superfamily HQ399_10030 PF00271 Helicase conserved C-terminal domain HQ399_10030 PF03880 DbpA RNA binding domain HQ399_10030 PF00270 DEAD/DEAH box helicase HQ399_10040 PF03707 Bacterial signalling protein N terminal repeat HQ399_10040 PF00990 Diguanylate cyclase, GGDEF domain HQ399_10040 PF00563 EAL domain HQ399_10040 PF13188 PAS domain HQ399_10045 PF03553 Na+/H+ antiporter family HQ399_10045 PF13726 Na+-H+ antiporter family HQ399_10050 PF00929 Exonuclease HQ399_10055 PF01569 PAP2 superfamily HQ399_10060 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ399_10060 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_10060 PF11890 Domain of unknown function (DUF3410) HQ399_10065 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ399_10065 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ399_10075 PF01416 tRNA pseudouridine synthase HQ399_10080 PF01039 Carboxyl transferase domain HQ399_10080 PF17848 Acetyl-coA carboxylase zinc finger domain HQ399_10085 PF08245 Mur ligase middle domain HQ399_10085 PF02875 Mur ligase family, glutamate ligase domain HQ399_10090 PF05036 Sporulation related domain HQ399_10095 PF01906 Putative heavy-metal-binding HQ399_10105 PF10414 Sirohaem synthase dimerisation region HQ399_10105 PF14824 Sirohaem biosynthesis protein central HQ399_10105 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ399_10110 PF13187 4Fe-4S dicluster domain HQ399_10110 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ399_10110 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ399_10115 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ399_10115 PF00175 Oxidoreductase NAD-binding domain HQ399_10120 PF17179 4Fe-4S dicluster domain HQ399_10125 PF01734 Patatin-like phospholipase HQ399_10130 PF02016 LD-carboxypeptidase N-terminal domain HQ399_10130 PF17676 LD-carboxypeptidase C-terminal domain HQ399_10135 PF00884 Sulfatase HQ399_10145 PF00696 Amino acid kinase family HQ399_10145 PF01842 ACT domain HQ399_10150 PF00696 Amino acid kinase family HQ399_10150 PF00583 Acetyltransferase (GNAT) family HQ399_10155 PF01625 Peptide methionine sulfoxide reductase HQ399_10175 PF00561 alpha/beta hydrolase fold HQ399_10195 PF07690 Major Facilitator Superfamily HQ399_10210 PF01593 Flavin containing amine oxidoreductase HQ399_10215 PF03239 Iron permease FTR1 family HQ399_10245 PF01740 STAS domain HQ399_10245 PF00916 Sulfate permease family HQ399_10255 PF05638 Type VI secretion system effector, Hcp HQ399_10275 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath HQ399_10285 PF05947 Type VI secretion system, TssF HQ399_10305 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE HQ399_10315 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_10315 PF07724 AAA domain (Cdc48 subfamily) HQ399_10315 PF17871 AAA lid domain HQ399_10315 PF10431 C-terminal, D2-small domain, of ClpB protein HQ399_10320 PF02954 Bacterial regulatory protein, Fis family HQ399_10320 PF00158 Sigma-54 interaction domain HQ399_10335 PF06744 Type VI secretion protein IcmF C-terminal HQ399_10335 PF06761 Intracellular multiplication and human macrophage-killing HQ399_10335 PF14331 ImcF-related N-terminal domain HQ399_10350 PF04717 Type VI secretion system, phage-baseplate injector HQ399_10355 PF13503 Domain of unknown function (DUF4123) HQ399_10380 PF13662 Toprim domain HQ399_10380 PF02132 RecR protein HQ399_10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_10385 PF00183 Hsp90 protein HQ399_10390 PF00005 ABC transporter HQ399_10395 PF00005 ABC transporter HQ399_10395 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_10400 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_10400 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_10405 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_10410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_10420 PF04012 PspA/IM30 family HQ399_10425 PF06667 Phage shock protein B HQ399_10435 PF04317 YcjX-like family, DUF463 HQ399_10440 PF05128 Domain of unknown function (DUF697) HQ399_10445 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ399_10450 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ399_10455 PF00158 Sigma-54 interaction domain HQ399_10455 PF18024 Helix-turn-helix domain HQ399_10470 PF00691 OmpA family HQ399_10475 PF03741 Integral membrane protein TerC family HQ399_10485 PF08891 YfcL protein HQ399_10490 PF00501 AMP-binding enzyme HQ399_10495 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ399_10505 PF13460 NAD(P)H-binding HQ399_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_10510 PF03466 LysR substrate binding domain HQ399_10515 PF07690 Major Facilitator Superfamily HQ399_10520 PF02678 Pirin HQ399_10520 PF05726 Pirin C-terminal cupin domain HQ399_10525 PF00857 Isochorismatase family HQ399_10530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_10530 PF03466 LysR substrate binding domain HQ399_10535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_10535 PF03466 LysR substrate binding domain HQ399_10540 PF08267 Cobalamin-independent synthase, N-terminal domain HQ399_10540 PF01717 Cobalamin-independent synthase, Catalytic domain HQ399_10550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_10550 PF03466 LysR substrate binding domain HQ399_10555 PF00232 Glycosyl hydrolase family 1 HQ399_10560 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ399_10560 PF18381 YcaO cyclodehydratase C-terminal domain HQ399_10565 PF01226 Formate/nitrite transporter HQ399_10570 PF01228 Glycine radical HQ399_10570 PF02901 Pyruvate formate lyase-like HQ399_10575 PF03692 Putative zinc- or iron-chelating domain HQ399_10590 PF00343 Carbohydrate phosphorylase HQ399_10595 PF00939 Sodium:sulfate symporter transmembrane region HQ399_10600 PF00085 Thioredoxin HQ399_10605 PF01627 Hpt domain HQ399_10605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ399_10605 PF00672 HAMP domain HQ399_10605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_10605 PF00512 His Kinase A (phospho-acceptor) domain HQ399_10605 PF00072 Response regulator receiver domain HQ399_10610 PF00664 ABC transporter transmembrane region HQ399_10610 PF00005 ABC transporter HQ399_10615 PF00664 ABC transporter transmembrane region HQ399_10615 PF00005 ABC transporter HQ399_10640 PF08543 Phosphomethylpyrimidine kinase HQ399_10645 PF00465 Iron-containing alcohol dehydrogenase HQ399_10655 PF13673 Acetyltransferase (GNAT) domain HQ399_10665 PF01928 CYTH domain HQ399_10675 PF13673 Acetyltransferase (GNAT) domain HQ399_10685 PF00285 Citrate synthase, C-terminal domain HQ399_10695 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ399_10700 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ399_10705 PF00890 FAD binding domain HQ399_10705 PF02910 Fumarate reductase flavoprotein C-term HQ399_10710 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ399_10715 PF02779 Transketolase, pyrimidine binding domain HQ399_10715 PF00676 Dehydrogenase E1 component HQ399_10715 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ399_10715 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ399_10720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ399_10720 PF00364 Biotin-requiring enzyme HQ399_10720 PF02817 e3 binding domain HQ399_10725 PF08442 ATP-grasp domain HQ399_10725 PF00549 CoA-ligase HQ399_10730 PF02629 CoA binding domain HQ399_10730 PF00549 CoA-ligase HQ399_10740 PF00106 short chain dehydrogenase HQ399_10745 PF07969 Amidohydrolase family HQ399_10755 PF01266 FAD dependent oxidoreductase HQ399_10760 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_10765 PF00005 ABC transporter HQ399_10780 PF00392 Bacterial regulatory proteins, gntR family HQ399_10780 PF07702 UTRA domain HQ399_10785 PF00266 Aminotransferase class-V HQ399_10790 PF00202 Aminotransferase class-III HQ399_10800 PF03918 Cytochrome C biogenesis protein HQ399_10805 PF08534 Redoxin HQ399_10810 PF01578 Cytochrome C assembly protein HQ399_10810 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ399_10815 PF03916 Polysulphide reductase, NrfD HQ399_10820 PF13247 4Fe-4S dicluster domain HQ399_10820 PF00037 4Fe-4S binding domain HQ399_10825 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) HQ399_10825 PF13435 Cytochrome c554 and c-prime HQ399_10830 PF02335 Cytochrome c552 HQ399_10840 PF02754 Cysteine-rich domain HQ399_10840 PF13183 4Fe-4S dicluster domain HQ399_10845 PF00890 FAD binding domain HQ399_10850 PF04324 BFD-like [2Fe-2S] binding domain HQ399_10850 PF01266 FAD dependent oxidoreductase HQ399_10860 PF02810 SEC-C motif HQ399_10865 PF00672 HAMP domain HQ399_10865 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_10865 PF02743 Cache domain HQ399_10875 PF03942 DTW domain HQ399_10880 PF01925 Sulfite exporter TauE/SafE HQ399_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_10885 PF03466 LysR substrate binding domain HQ399_10895 PF14525 AraC-binding-like domain HQ399_10895 PF12833 Helix-turn-helix domain HQ399_10900 PF11398 Protein of unknown function (DUF2813) HQ399_10910 PF00128 Alpha amylase, catalytic domain HQ399_10910 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ399_10960 PF13419 Haloacid dehalogenase-like hydrolase HQ399_10975 PF01207 Dihydrouridine synthase (Dus) HQ399_10980 PF04304 Protein of unknown function (DUF454) HQ399_10985 PF00156 Phosphoribosyl transferase domain HQ399_10990 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ399_10990 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ399_10990 PF12169 DNA polymerase III subunits gamma and tau domain III HQ399_10995 PF02575 YbaB/EbfC DNA-binding family HQ399_11015 PF01261 Xylose isomerase-like TIM barrel HQ399_11020 PF03466 LysR substrate binding domain HQ399_11020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_11030 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ399_11035 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ399_11055 PF00136 DNA polymerase family B HQ399_11055 PF03104 DNA polymerase family B, exonuclease domain HQ399_11070 PF01863 Protein of unknown function DUF45 HQ399_11085 PF03606 C4-dicarboxylate anaerobic carrier HQ399_11100 PF01266 FAD dependent oxidoreductase HQ399_11100 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ399_11105 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ399_11105 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ399_11110 PF02080 TrkA-C domain HQ399_11110 PF06826 Predicted Permease Membrane Region HQ399_11120 PF04851 Type III restriction enzyme, res subunit HQ399_11120 PF02151 UvrB/uvrC motif HQ399_11120 PF12344 Ultra-violet resistance protein B HQ399_11120 PF17757 UvrB interaction domain HQ399_11120 PF00271 Helicase conserved C-terminal domain HQ399_11130 PF09335 SNARE associated Golgi protein HQ399_11135 PF02600 Disulfide bond formation protein DsbB HQ399_11140 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ399_11145 PF07840 FadR C-terminal domain HQ399_11145 PF00392 Bacterial regulatory proteins, gntR family HQ399_11155 PF07152 YaeQ protein HQ399_11165 PF02954 Bacterial regulatory protein, Fis family HQ399_11165 PF13188 PAS domain HQ399_11165 PF00158 Sigma-54 interaction domain HQ399_11195 PF01554 MatE HQ399_11200 PF06786 Uncharacterised protein family (UPF0253) HQ399_11210 PF00677 Lumazine binding domain HQ399_11225 PF13419 Haloacid dehalogenase-like hydrolase HQ399_11230 PF01370 NAD dependent epimerase/dehydratase family HQ399_11230 PF02222 ATP-grasp domain HQ399_11235 PF00892 EamA-like transporter family HQ399_11240 PF02525 Flavodoxin-like fold HQ399_11270 PF04269 Protein of unknown function, DUF440 HQ399_11275 PF00912 Transglycosylase HQ399_11280 PF04269 Protein of unknown function, DUF440 HQ399_11285 PF03776 Septum formation topological specificity factor MinE HQ399_11290 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ399_11295 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ399_11295 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ399_11300 PF05166 YcgL domain HQ399_11310 PF03831 PhnA domain HQ399_11310 PF08274 PhnA Zinc-Ribbon HQ399_11320 PF08329 Chitinase A, N-terminal domain HQ399_11320 PF00704 Glycosyl hydrolases family 18 HQ399_11325 PF08448 PAS fold HQ399_11325 PF00990 Diguanylate cyclase, GGDEF domain HQ399_11330 PF01713 Smr domain HQ399_11335 PF05175 Methyltransferase small domain HQ399_11340 PF01264 Chorismate synthase HQ399_11350 PF00271 Helicase conserved C-terminal domain HQ399_11350 PF00270 DEAD/DEAH box helicase HQ399_11355 PF01124 MAPEG family HQ399_11370 PF03222 Tryptophan/tyrosine permease family HQ399_11375 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ399_11375 PF00356 Bacterial regulatory proteins, lacI family HQ399_11380 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_11380 PF00381 PTS HPr component phosphorylation site HQ399_11385 PF00294 pfkB family carbohydrate kinase HQ399_11390 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ399_11390 PF02378 Phosphotransferase system, EIIC HQ399_11395 PF06945 Protein of unknown function (DUF1289) HQ399_11400 PF06725 3D domain HQ399_11400 PF03562 MltA specific insert domain HQ399_11405 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_11410 PF00268 Ribonucleotide reductase, small chain HQ399_11415 PF00317 Ribonucleotide reductase, all-alpha domain HQ399_11415 PF03477 ATP cone domain HQ399_11415 PF02867 Ribonucleotide reductase, barrel domain HQ399_11420 PF13419 Haloacid dehalogenase-like hydrolase HQ399_11430 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ399_11430 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ399_11435 PF00128 Alpha amylase, catalytic domain HQ399_11445 PF04055 Radical SAM superfamily HQ399_11455 PF02824 TGS domain HQ399_11455 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ399_11455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ399_11455 PF03129 Anticodon binding domain HQ399_11460 PF00707 Translation initiation factor IF-3, C-terminal domain HQ399_11460 PF05198 Translation initiation factor IF-3, N-terminal domain HQ399_11465 PF01632 Ribosomal protein L35 HQ399_11470 PF00453 Ribosomal protein L20 HQ399_11475 PF01323 DSBA-like thioredoxin domain HQ399_11480 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ399_11480 PF01409 tRNA synthetases class II core domain (F) HQ399_11485 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ399_11485 PF03147 Ferredoxin-fold anticodon binding domain HQ399_11485 PF03483 B3/4 domain HQ399_11485 PF03484 tRNA synthetase B5 domain HQ399_11485 PF01588 Putative tRNA binding domain HQ399_11490 PF00216 Bacterial DNA-binding protein HQ399_11495 PF00512 His Kinase A (phospho-acceptor) domain HQ399_11495 PF09456 RcsC Alpha-Beta-Loop (ABL) HQ399_11495 PF00072 Response regulator receiver domain HQ399_11495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_11510 PF02146 Sir2 family HQ399_11515 PF00356 Bacterial regulatory proteins, lacI family HQ399_11520 PF00294 pfkB family carbohydrate kinase HQ399_11525 PF13407 Periplasmic binding protein domain HQ399_11530 PF02653 Branched-chain amino acid transport system / permease component HQ399_11535 PF00005 ABC transporter HQ399_11540 PF05025 RbsD / FucU transport protein family HQ399_11545 PF02798 Glutathione S-transferase, N-terminal domain HQ399_11545 PF00043 Glutathione S-transferase, C-terminal domain HQ399_11550 PF13416 Bacterial extracellular solute-binding protein HQ399_11555 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_11560 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_11565 PF00005 ABC transporter HQ399_11565 PF08402 TOBE domain HQ399_11580 PF01171 PP-loop family HQ399_11585 PF00582 Universal stress protein family HQ399_11590 PF13545 Crp-like helix-turn-helix domain HQ399_11590 PF00027 Cyclic nucleotide-binding domain HQ399_11605 PF00403 Heavy-metal-associated domain HQ399_11615 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ399_11615 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ399_11630 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ399_11645 PF13185 GAF domain HQ399_11650 PF04352 ProQ/FINO family HQ399_11650 PF17516 ProQ C-terminal domain HQ399_11655 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ399_11655 PF00595 PDZ domain HQ399_11655 PF03572 Peptidase family S41 HQ399_11655 PF17804 Tail specific protease N-terminal domain HQ399_11660 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ399_11660 PF01433 Peptidase family M1 domain HQ399_11660 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ399_11670 PF05088 Bacterial NAD-glutamate dehydrogenase HQ399_11675 PF01180 Dihydroorotate dehydrogenase HQ399_11680 PF07126 Cell-division protein ZapC HQ399_11685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_11685 PF12729 Four helix bundle sensory module for signal transduction HQ399_11685 PF00672 HAMP domain HQ399_11690 PF00360 Phytochrome region HQ399_11690 PF00990 Diguanylate cyclase, GGDEF domain HQ399_11690 PF00563 EAL domain HQ399_11690 PF01590 GAF domain HQ399_11695 PF00072 Response regulator receiver domain HQ399_11695 PF01339 CheB methylesterase HQ399_11700 PF03705 CheR methyltransferase, all-alpha domain HQ399_11700 PF01739 CheR methyltransferase, SAM binding domain HQ399_11705 PF01584 CheW-like domain HQ399_11710 PF00672 HAMP domain HQ399_11710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_11710 PF17202 Single cache domain 3 HQ399_11715 PF02895 Signal transducing histidine kinase, homodimeric domain HQ399_11715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_11715 PF01627 Hpt domain HQ399_11715 PF01584 CheW-like domain HQ399_11715 PF09078 CheY binding HQ399_11725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_11725 PF01584 CheW-like domain HQ399_11725 PF01627 Hpt domain HQ399_11725 PF00072 Response regulator receiver domain HQ399_11730 PF01170 Putative RNA methylase family UPF0020 HQ399_11730 PF10672 S-adenosylmethionine-dependent methyltransferase HQ399_11730 PF02926 THUMP domain HQ399_11740 PF00005 ABC transporter HQ399_11740 PF16326 ABC transporter C-terminal domain HQ399_11740 PF12848 ABC transporter HQ399_11745 PF04957 Ribosome modulation factor HQ399_11750 PF07977 FabA-like domain HQ399_11755 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ399_11755 PF13654 AAA domain HQ399_11770 PF07130 YebG protein HQ399_11780 PF00106 short chain dehydrogenase HQ399_11795 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ399_11795 PF00440 Bacterial regulatory proteins, tetR family HQ399_11805 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ399_11805 PF06974 Protein of unknown function (DUF1298) HQ399_11820 PF03972 MmgE/PrpD family HQ399_11825 PF00285 Citrate synthase, C-terminal domain HQ399_11840 PF04403 Paraquat-inducible protein A HQ399_11845 PF02470 MlaD protein HQ399_11850 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF HQ399_11850 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF HQ399_11850 PF01189 16S rRNA methyltransferase RsmB/F HQ399_11860 PF00589 Phage integrase family HQ399_11865 PF01026 TatD related DNase HQ399_11870 PF09115 DNA polymerase III, delta subunit, C terminal HQ399_11875 PF02223 Thymidylate kinase HQ399_11880 PF02618 YceG-like family HQ399_11885 PF01063 Amino-transferase class IV HQ399_11890 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ399_11890 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ399_11895 PF00550 Phosphopantetheine attachment site HQ399_11905 PF00698 Acyl transferase domain HQ399_11910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ399_11910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ399_11915 PF02504 Fatty acid synthesis protein HQ399_11920 PF01783 Ribosomal L32p protein family HQ399_11925 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ399_11930 PF02545 Maf-like protein HQ399_11935 PF13419 Haloacid dehalogenase-like hydrolase HQ399_11940 PF00849 RNA pseudouridylate synthase HQ399_11940 PF01479 S4 domain HQ399_11945 PF10150 Ribonuclease E/G family HQ399_11945 PF12111 Polyribonucleotide phosphorylase C terminal HQ399_11945 PF00575 S1 RNA binding domain HQ399_11950 PF01384 Phosphate transporter family HQ399_11955 PF00692 dUTPase HQ399_11960 PF00485 Phosphoribulokinase / Uridine kinase family HQ399_11965 PF10609 NUBPL iron-transfer P-loop NTPase HQ399_11970 PF08264 Anticodon-binding domain of tRNA HQ399_11970 PF09334 tRNA synthetases class I (M) HQ399_11970 PF01588 Putative tRNA binding domain HQ399_11980 PF00708 Acylphosphatase HQ399_11985 PF00672 HAMP domain HQ399_11985 PF12729 Four helix bundle sensory module for signal transduction HQ399_11985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_11990 PF10672 S-adenosylmethionine-dependent methyltransferase HQ399_11990 PF17785 PUA-like domain HQ399_12000 PF00586 AIR synthase related protein, N-terminal domain HQ399_12000 PF02769 AIR synthase related protein, C-terminal domain HQ399_12010 PF00753 Metallo-beta-lactamase superfamily HQ399_12015 PF01612 3'-5' exonuclease HQ399_12015 PF00570 HRDC domain HQ399_12020 PF00501 AMP-binding enzyme HQ399_12020 PF13193 AMP-binding enzyme C-terminal domain HQ399_12025 PF12697 Alpha/beta hydrolase family HQ399_12035 PF00814 Glycoprotease family HQ399_12040 PF13307 Helicase C-terminal domain HQ399_12040 PF04851 Type III restriction enzyme, res subunit HQ399_12050 PF08029 HisG, C-terminal domain HQ399_12050 PF01634 ATP phosphoribosyltransferase HQ399_12055 PF00815 Histidinol dehydrogenase HQ399_12060 PF00155 Aminotransferase class I and II HQ399_12065 PF00475 Imidazoleglycerol-phosphate dehydratase HQ399_12065 PF08645 Polynucleotide kinase 3 phosphatase HQ399_12070 PF00117 Glutamine amidotransferase class-I HQ399_12075 PF00977 Histidine biosynthesis protein HQ399_12080 PF00977 Histidine biosynthesis protein HQ399_12085 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ399_12085 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ399_12090 PF00990 Diguanylate cyclase, GGDEF domain HQ399_12090 PF08448 PAS fold HQ399_12095 PF00501 AMP-binding enzyme HQ399_12095 PF13193 AMP-binding enzyme C-terminal domain HQ399_12100 PF03606 C4-dicarboxylate anaerobic carrier HQ399_12110 PF05433 Glycine zipper 2TM domain HQ399_12115 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_12115 PF01799 [2Fe-2S] binding domain HQ399_12120 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ399_12120 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ399_12125 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ399_12125 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ399_12130 PF00860 Permease family HQ399_12135 PF01979 Amidohydrolase family HQ399_12145 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ399_12145 PF01799 [2Fe-2S] binding domain HQ399_12145 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ399_12150 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ399_12155 PF01979 Amidohydrolase family HQ399_12160 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ399_12160 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_12170 PF12804 MobA-like NTP transferase domain HQ399_12180 PF13478 XdhC Rossmann domain HQ399_12180 PF02625 XdhC and CoxI family HQ399_12185 PF00892 EamA-like transporter family HQ399_12190 PF00696 Amino acid kinase family HQ399_12195 PF01979 Amidohydrolase family HQ399_12200 PF01546 Peptidase family M20/M25/M40 HQ399_12200 PF07687 Peptidase dimerisation domain HQ399_12205 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_12210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ399_12210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ399_12235 PF01327 Polypeptide deformylase HQ399_12245 PF03330 Lytic transglycolase HQ399_12250 PF16330 MukB hinge domain HQ399_12250 PF04310 MukB N-terminal HQ399_12255 PF04288 MukE-like family HQ399_12260 PF03882 MukF winged-helix domain HQ399_12260 PF17193 MukF C-terminal domain HQ399_12260 PF17192 MukF middle domain HQ399_12265 PF13847 Methyltransferase domain HQ399_12270 PF02698 DUF218 domain HQ399_12275 PF00121 Triosephosphate isomerase HQ399_12280 PF00365 Phosphofructokinase HQ399_12285 PF00375 Sodium:dicarboxylate symporter family HQ399_12290 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ399_12295 PF03313 Serine dehydratase alpha chain HQ399_12295 PF03315 Serine dehydratase beta chain HQ399_12300 PF03315 Serine dehydratase beta chain HQ399_12300 PF03313 Serine dehydratase alpha chain HQ399_12310 PF04715 Anthranilate synthase component I, N terminal region HQ399_12310 PF00425 chorismate binding enzyme HQ399_12315 PF00293 NUDIX domain HQ399_12320 PF03222 Tryptophan/tyrosine permease family HQ399_12325 PF00375 Sodium:dicarboxylate symporter family HQ399_12330 PF00270 DEAD/DEAH box helicase HQ399_12330 PF00271 Helicase conserved C-terminal domain HQ399_12330 PF00570 HRDC domain HQ399_12330 PF16124 RecQ zinc-binding HQ399_12330 PF09382 RQC domain HQ399_12335 PF08298 PrkA AAA domain HQ399_12335 PF06798 PrkA serine protein kinase C-terminal domain HQ399_12340 PF04285 Protein of unknown function (DUF444) HQ399_12345 PF04293 SpoVR like protein HQ399_12350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ399_12350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ399_12350 PF00378 Enoyl-CoA hydratase/isomerase HQ399_12355 PF02803 Thiolase, C-terminal domain HQ399_12355 PF00108 Thiolase, N-terminal domain HQ399_12360 PF17863 AAA lid domain HQ399_12360 PF07726 ATPase family associated with various cellular activities (AAA) HQ399_12365 PF01882 Protein of unknown function DUF58 HQ399_12380 PF13519 von Willebrand factor type A domain HQ399_12390 PF08281 Sigma-70, region 4 HQ399_12390 PF04542 Sigma-70 region 2 HQ399_12400 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ399_12405 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ399_12410 PF00563 EAL domain HQ399_12410 PF08668 HDOD domain HQ399_12415 PF02803 Thiolase, C-terminal domain HQ399_12415 PF00108 Thiolase, N-terminal domain HQ399_12420 PF00376 MerR family regulatory protein HQ399_12420 PF09278 MerR, DNA binding HQ399_12425 PF01386 Ribosomal L25p family HQ399_12435 PF00270 DEAD/DEAH box helicase HQ399_12435 PF11898 Domain of unknown function (DUF3418) HQ399_12435 PF04408 Helicase associated domain (HA2) HQ399_12435 PF00271 Helicase conserved C-terminal domain HQ399_12435 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold HQ399_12440 PF01743 Poly A polymerase head domain HQ399_12440 PF02272 DHHA1 domain HQ399_12440 PF00571 CBS domain HQ399_12440 PF01368 DHH family HQ399_12445 PF01966 HD domain HQ399_12455 PF00534 Glycosyl transferases group 1 HQ399_12455 PF00862 Sucrose synthase HQ399_12460 PF13439 Glycosyltransferase Family 4 HQ399_12460 PF00534 Glycosyl transferases group 1 HQ399_12475 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_12475 PF12464 Maltose acetyltransferase HQ399_12515 PF10137 Predicted nucleotide-binding protein containing TIR-like domain HQ399_12525 PF13439 Glycosyltransferase Family 4 HQ399_12525 PF00534 Glycosyl transferases group 1 HQ399_12530 PF03552 Cellulose synthase HQ399_12530 PF00535 Glycosyl transferase family 2 HQ399_12530 PF07238 PilZ domain HQ399_12535 PF02397 Bacterial sugar transferase HQ399_12540 PF00534 Glycosyl transferases group 1 HQ399_12545 PF00211 Adenylate and Guanylate cyclase catalytic domain HQ399_12545 PF00072 Response regulator receiver domain HQ399_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_12575 PF00512 His Kinase A (phospho-acceptor) domain HQ399_12575 PF09308 LuxQ, periplasmic HQ399_12575 PF00072 Response regulator receiver domain HQ399_12580 PF00929 Exonuclease HQ399_12580 PF08411 Exonuclease C-terminal HQ399_12595 PF03788 LrgA family HQ399_12600 PF04172 LrgB-like family HQ399_12605 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ399_12605 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ399_12610 PF01212 Beta-eliminating lyase HQ399_12620 PF04244 Deoxyribodipyrimidine photo-lyase-related protein HQ399_12625 PF01266 FAD dependent oxidoreductase HQ399_12635 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ399_12635 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ399_12640 PF02634 FdhD/NarQ family HQ399_12645 PF01590 GAF domain HQ399_12645 PF02954 Bacterial regulatory protein, Fis family HQ399_12645 PF00158 Sigma-54 interaction domain HQ399_12660 PF13247 4Fe-4S dicluster domain HQ399_12660 PF12800 4Fe-4S binding domain HQ399_12675 PF02705 K+ potassium transporter HQ399_12680 PF12798 4Fe-4S binding domain HQ399_12680 PF00037 4Fe-4S binding domain HQ399_12685 PF00361 Proton-conducting membrane transporter HQ399_12690 PF00146 NADH dehydrogenase HQ399_12695 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ399_12695 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ399_12695 PF00374 Nickel-dependent hydrogenase HQ399_12700 PF12838 4Fe-4S dicluster domain HQ399_12705 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ399_12710 PF07450 Formate hydrogenlyase maturation protein HycH HQ399_12725 PF12390 Selenocysteine synthase N terminal HQ399_12725 PF03841 L-seryl-tRNA selenium transferase HQ399_12730 PF03144 Elongation factor Tu domain 2 HQ399_12730 PF09105 Elongation factor SelB, winged helix HQ399_12730 PF09107 Elongation factor SelB, winged helix HQ399_12730 PF09106 Elongation factor SelB, winged helix HQ399_12730 PF00009 Elongation factor Tu GTP binding domain HQ399_12735 PF17788 HypF Kae1-like domain HQ399_12735 PF00708 Acylphosphatase HQ399_12735 PF07503 HypF finger HQ399_12735 PF01300 Telomere recombination HQ399_12740 PF01455 HupF/HypC family HQ399_12745 PF01924 Hydrogenase formation hypA family HQ399_12750 PF00586 AIR synthase related protein, N-terminal domain HQ399_12750 PF02769 AIR synthase related protein, C-terminal domain HQ399_12755 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA HQ399_12760 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ399_12765 PF00005 ABC transporter HQ399_12765 PF08402 TOBE domain HQ399_12770 PF00005 ABC transporter HQ399_12775 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_12775 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_12780 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_12785 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_12790 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE HQ399_12795 PF01750 Hydrogenase maturation protease HQ399_12800 PF00374 Nickel-dependent hydrogenase HQ399_12805 PF03916 Polysulphide reductase, NrfD HQ399_12810 PF13247 4Fe-4S dicluster domain HQ399_12815 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ399_12815 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal HQ399_12835 PF01925 Sulfite exporter TauE/SafE HQ399_12840 PF13520 Amino acid permease HQ399_12850 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ399_12850 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ399_12855 PF00378 Enoyl-CoA hydratase/isomerase HQ399_12860 PF00378 Enoyl-CoA hydratase/isomerase HQ399_12865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ399_12865 PF02770 Acyl-CoA dehydrogenase, middle domain HQ399_12865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ399_12870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ399_12870 PF02770 Acyl-CoA dehydrogenase, middle domain HQ399_12870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ399_12875 PF01039 Carboxyl transferase domain HQ399_12880 PF00378 Enoyl-CoA hydratase/isomerase HQ399_12885 PF02785 Biotin carboxylase C-terminal domain HQ399_12885 PF00289 Biotin carboxylase, N-terminal domain HQ399_12885 PF00364 Biotin-requiring enzyme HQ399_12885 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ399_12890 PF00682 HMGL-like HQ399_12895 PF09278 MerR, DNA binding HQ399_12895 PF00376 MerR family regulatory protein HQ399_12910 PF01184 GPR1/FUN34/yaaH family HQ399_12915 PF06167 Glucose-regulated metallo-peptidase M90 HQ399_12920 PF00583 Acetyltransferase (GNAT) family HQ399_12925 PF01235 Sodium:alanine symporter family HQ399_12930 PF00378 Enoyl-CoA hydratase/isomerase HQ399_12945 PF04341 Protein of unknown function, DUF485 HQ399_12950 PF00474 Sodium:solute symporter family HQ399_12955 PF00005 ABC transporter HQ399_12955 PF12848 ABC transporter HQ399_12960 PF13145 PPIC-type PPIASE domain HQ399_12965 PF00216 Bacterial DNA-binding protein HQ399_12970 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_12970 PF02190 ATP-dependent protease La (LON) substrate-binding domain HQ399_12970 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ399_12975 PF10431 C-terminal, D2-small domain, of ClpB protein HQ399_12975 PF06689 ClpX C4-type zinc finger HQ399_12975 PF07724 AAA domain (Cdc48 subfamily) HQ399_12980 PF00574 Clp protease HQ399_12985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_12985 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ399_12985 PF05697 Bacterial trigger factor protein (TF) HQ399_13000 PF02687 FtsX-like permease family HQ399_13000 PF12704 MacB-like periplasmic core domain HQ399_13005 PF00005 ABC transporter HQ399_13010 PF12704 MacB-like periplasmic core domain HQ399_13010 PF02687 FtsX-like permease family HQ399_13020 PF00270 DEAD/DEAH box helicase HQ399_13020 PF02559 CarD-like/TRCF domain HQ399_13020 PF00271 Helicase conserved C-terminal domain HQ399_13020 PF03461 TRCF domain HQ399_13020 PF17757 UvrB interaction domain HQ399_13025 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ399_13030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_13035 PF00892 EamA-like transporter family HQ399_13045 PF00300 Histidine phosphatase superfamily (branch 1) HQ399_13050 PF00675 Insulinase (Peptidase family M16) HQ399_13050 PF05193 Peptidase M16 inactive domain HQ399_13055 PF05724 Thiopurine S-methyltransferase (TPMT) HQ399_13080 PF02540 NAD synthase HQ399_13080 PF00117 Glutamine amidotransferase class-I HQ399_13080 PF00958 GMP synthase C terminal domain HQ399_13085 PF00571 CBS domain HQ399_13085 PF00478 IMP dehydrogenase / GMP reductase domain HQ399_13095 PF02601 Exonuclease VII, large subunit HQ399_13095 PF13742 OB-fold nucleic acid binding domain HQ399_13100 PF00392 Bacterial regulatory proteins, gntR family HQ399_13100 PF07702 UTRA domain HQ399_13105 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ399_13105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_13105 PF02378 Phosphotransferase system, EIIC HQ399_13110 PF01074 Glycosyl hydrolases family 38 N-terminal domain HQ399_13110 PF07748 Glycosyl hydrolases family 38 C-terminal domain HQ399_13110 PF09261 Alpha mannosidase middle domain HQ399_13115 PF01820 D-ala D-ala ligase N-terminus HQ399_13115 PF07478 D-ala D-ala ligase C-terminus HQ399_13125 PF00255 Glutathione peroxidase HQ399_13130 PF00271 Helicase conserved C-terminal domain HQ399_13130 PF00270 DEAD/DEAH box helicase HQ399_13135 PF04055 Radical SAM superfamily HQ399_13140 PF00672 HAMP domain HQ399_13140 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_13145 PF00793 DAHP synthetase I family HQ399_13150 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ399_13155 PF00266 Aminotransferase class-V HQ399_13160 PF00766 Electron transfer flavoprotein FAD-binding domain HQ399_13160 PF01012 Electron transfer flavoprotein domain HQ399_13165 PF01012 Electron transfer flavoprotein domain HQ399_13175 PF01544 CorA-like Mg2+ transporter protein HQ399_13180 PF11143 Protein of unknown function (DUF2919) HQ399_13190 PF07273 Protein of unknown function (DUF1439) HQ399_13200 PF00483 Nucleotidyl transferase HQ399_13205 PF03707 Bacterial signalling protein N terminal repeat HQ399_13205 PF00563 EAL domain HQ399_13205 PF00990 Diguanylate cyclase, GGDEF domain HQ399_13220 PF00294 pfkB family carbohydrate kinase HQ399_13230 PF00762 Ferrochelatase HQ399_13235 PF05191 Adenylate kinase, active site lid HQ399_13240 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ399_13245 PF00156 Phosphoribosyl transferase domain HQ399_13250 PF02674 Colicin V production protein HQ399_13255 PF02403 Seryl-tRNA synthetase N-terminal domain HQ399_13255 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ399_13260 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_13260 PF12002 MgsA AAA+ ATPase C terminal HQ399_13260 PF16193 AAA C-terminal domain HQ399_13265 PF03548 Outer membrane lipoprotein carrier protein LolA HQ399_13270 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ399_13270 PF09397 Ftsk gamma domain HQ399_13270 PF01580 FtsK/SpoIIIE family HQ399_13270 PF17854 FtsK alpha domain HQ399_13275 PF01037 Lrp/AsnC ligand binding domain HQ399_13280 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ399_13280 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ399_13285 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_13290 PF00990 Diguanylate cyclase, GGDEF domain HQ399_13295 PF05433 Glycine zipper 2TM domain HQ399_13300 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ399_13305 PF04377 Arginine-tRNA-protein transferase, C terminus HQ399_13305 PF04376 Arginine-tRNA-protein transferase, N terminus HQ399_13310 PF01176 Translation initiation factor 1A / IF-1 HQ399_13315 PF17871 AAA lid domain HQ399_13315 PF00004 ATPase family associated with various cellular activities (AAA) HQ399_13315 PF07724 AAA domain (Cdc48 subfamily) HQ399_13315 PF02861 Clp amino terminal domain, pathogenicity island component HQ399_13315 PF10431 C-terminal, D2-small domain, of ClpB protein HQ399_13320 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ399_13325 PF00313 'Cold-shock' DNA-binding domain HQ399_13330 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain HQ399_13330 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain HQ399_13350 PF00072 Response regulator receiver domain HQ399_13350 PF00486 Transcriptional regulatory protein, C terminal HQ399_13355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_13355 PF00512 His Kinase A (phospho-acceptor) domain HQ399_13355 PF00672 HAMP domain HQ399_13365 PF03706 Lysylphosphatidylglycerol synthase TM region HQ399_13365 PF09924 Uncharacterised conserved protein (DUF2156) HQ399_13375 PF01219 Prokaryotic diacylglycerol kinase HQ399_13380 PF08019 Phosphoethanolamine transferase EptA/EptB HQ399_13380 PF00884 Sulfatase HQ399_13395 PF10722 Putative bacterial sensory transduction regulator HQ399_13405 PF00265 Thymidine kinase HQ399_13410 PF03553 Na+/H+ antiporter family HQ399_13415 PF00816 H-NS histone family HQ399_13420 PF01923 Cobalamin adenosyltransferase HQ399_13425 PF12843 Putative quorum-sensing-regulated virulence factor HQ399_13430 PF04055 Radical SAM superfamily HQ399_13435 PF06508 Queuosine biosynthesis protein QueC HQ399_13450 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ399_13455 PF18073 Rubredoxin metal binding domain HQ399_13465 PF00216 Bacterial DNA-binding protein HQ399_13470 PF00575 S1 RNA binding domain HQ399_13475 PF02224 Cytidylate kinase HQ399_13480 PF00925 GTP cyclohydrolase II HQ399_13485 PF03466 LysR substrate binding domain HQ399_13485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_13490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_13490 PF03466 LysR substrate binding domain HQ399_13495 PF07690 Major Facilitator Superfamily HQ399_13510 PF00881 Nitroreductase family HQ399_13515 PF03806 AbgT putative transporter family HQ399_13520 PF00990 Diguanylate cyclase, GGDEF domain HQ399_13520 PF03707 Bacterial signalling protein N terminal repeat HQ399_13520 PF13188 PAS domain HQ399_13520 PF00563 EAL domain HQ399_13525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_13525 PF03466 LysR substrate binding domain HQ399_13530 PF00072 Response regulator receiver domain HQ399_13540 PF01212 Beta-eliminating lyase HQ399_13545 PF00106 short chain dehydrogenase HQ399_13555 PF00248 Aldo/keto reductase family HQ399_13560 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ399_13570 PF00005 ABC transporter HQ399_13575 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_13580 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_13585 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_13590 PF03411 Penicillin-insensitive murein endopeptidase HQ399_13600 PF04536 TPM domain HQ399_13615 PF01618 MotA/TolQ/ExbB proton channel family HQ399_13625 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ399_13630 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ399_13635 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ399_13635 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ399_13645 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ399_13645 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ399_13650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ399_13650 PF00384 Molybdopterin oxidoreductase HQ399_13650 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ399_13655 PF00146 NADH dehydrogenase HQ399_13660 PF12838 4Fe-4S dicluster domain HQ399_13665 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ399_13670 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ399_13675 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ399_13675 PF00361 Proton-conducting membrane transporter HQ399_13680 PF00361 Proton-conducting membrane transporter HQ399_13685 PF00361 Proton-conducting membrane transporter HQ399_13695 PF00072 Response regulator receiver domain HQ399_13700 PF01966 HD domain HQ399_13705 PF02769 AIR synthase related protein, C-terminal domain HQ399_13705 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ399_13705 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ399_13710 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_13710 PF01464 Transglycosylase SLT domain HQ399_13715 PF07191 zinc-ribbons HQ399_13720 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ399_13720 PF01926 50S ribosome-binding GTPase HQ399_13725 PF13360 PQQ-like domain HQ399_13730 PF09976 Tetratricopeptide repeat-like domain HQ399_13735 PF13393 Histidyl-tRNA synthetase HQ399_13735 PF03129 Anticodon binding domain HQ399_13740 PF04551 GcpE protein HQ399_13745 PF13464 Domain of unknown function (DUF4115) HQ399_13755 PF04055 Radical SAM superfamily HQ399_13760 PF00334 Nucleoside diphosphate kinase HQ399_13765 PF12404 Peptidase HQ399_13765 PF00883 Cytosol aminopeptidase family, catalytic domain HQ399_13770 PF12404 Peptidase HQ399_13770 PF00883 Cytosol aminopeptidase family, catalytic domain HQ399_13775 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_13780 PF00012 Hsp70 protein HQ399_13785 PF07743 HSCB C-terminal oligomerisation domain HQ399_13790 PF01521 Iron-sulphur cluster biosynthesis HQ399_13795 PF01592 NifU-like N terminal domain HQ399_13800 PF00266 Aminotransferase class-V HQ399_13805 PF02082 Transcriptional regulator HQ399_13810 PF00588 SpoU rRNA Methylase family HQ399_13820 PF02036 SCP-2 sterol transfer family HQ399_13825 PF01136 Peptidase family U32 HQ399_13830 PF01136 Peptidase family U32 HQ399_13835 PF13181 Tetratricopeptide repeat HQ399_13835 PF07719 Tetratricopeptide repeat HQ399_13845 PF07549 SecD/SecF GG Motif HQ399_13845 PF02355 Protein export membrane protein HQ399_13850 PF07549 SecD/SecF GG Motif HQ399_13850 PF13721 SecD export protein N-terminal TM region HQ399_13850 PF02355 Protein export membrane protein HQ399_13855 PF02699 Preprotein translocase subunit HQ399_13860 PF01702 Queuine tRNA-ribosyltransferase HQ399_13865 PF02547 Queuosine biosynthesis protein HQ399_13870 PF00005 ABC transporter HQ399_13870 PF00571 CBS domain HQ399_13875 PF00578 AhpC/TSA family HQ399_13875 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ399_13880 PF13192 Thioredoxin domain HQ399_13880 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_13920 PF00664 ABC transporter transmembrane region HQ399_13920 PF00005 ABC transporter HQ399_13920 PF03412 Peptidase C39 family HQ399_13925 PF04055 Radical SAM superfamily HQ399_13925 PF16199 Radical_SAM C-terminal domain HQ399_13930 PF01493 GXGXG motif HQ399_13930 PF00310 Glutamine amidotransferases class-II HQ399_13930 PF04898 Glutamate synthase central domain HQ399_13930 PF01645 Conserved region in glutamate synthase HQ399_13935 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_13935 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ399_13940 PF00005 ABC transporter HQ399_13945 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_13950 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_13965 PF00271 Helicase conserved C-terminal domain HQ399_13965 PF00270 DEAD/DEAH box helicase HQ399_13980 PF07664 Ferrous iron transport protein B C terminus HQ399_13980 PF17910 FeoB cytosolic helical domain HQ399_13980 PF02421 Ferrous iron transport protein B HQ399_13980 PF07670 Nucleoside recognition HQ399_13990 PF01253 Translation initiation factor SUI1 HQ399_13995 PF01169 Uncharacterized protein family UPF0016 HQ399_14025 PF01979 Amidohydrolase family HQ399_14035 PF14581 SseB protein C-terminal domain HQ399_14035 PF07179 SseB protein N-terminal domain HQ399_14050 PF01406 tRNA synthetases class I (C) catalytic domain HQ399_14050 PF09190 DALR domain HQ399_14055 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ399_14065 PF00149 Calcineurin-like phosphoesterase HQ399_14070 PF00672 HAMP domain HQ399_14070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_14075 PF04226 Transglycosylase associated protein HQ399_14080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_14080 PF00512 His Kinase A (phospho-acceptor) domain HQ399_14080 PF08521 Two-component sensor kinase N-terminal HQ399_14085 PF00072 Response regulator receiver domain HQ399_14085 PF00486 Transcriptional regulatory protein, C terminal HQ399_14100 PF01970 Tripartite tricarboxylate transporter TctA family HQ399_14120 PF01066 CDP-alcohol phosphatidyltransferase HQ399_14125 PF01541 GIY-YIG catalytic domain HQ399_14125 PF02151 UvrB/uvrC motif HQ399_14125 PF08459 UvrC Helix-hairpin-helix N-terminal HQ399_14130 PF00196 Bacterial regulatory proteins, luxR family HQ399_14130 PF00072 Response regulator receiver domain HQ399_14135 PF02348 Cytidylyltransferase HQ399_14140 PF03966 Trm112p-like protein HQ399_14145 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ399_14150 PF00664 ABC transporter transmembrane region HQ399_14150 PF00005 ABC transporter HQ399_14170 PF00155 Aminotransferase class I and II HQ399_14180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_14180 PF03466 LysR substrate binding domain HQ399_14185 PF04219 Protein of unknown function, DUF HQ399_14190 PF03974 Ecotin HQ399_14195 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ399_14200 PF01266 FAD dependent oxidoreductase HQ399_14200 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ399_14205 PF00455 DeoR C terminal sensor domain HQ399_14205 PF08220 DeoR-like helix-turn-helix domain HQ399_14210 PF07690 Major Facilitator Superfamily HQ399_14215 PF00230 Major intrinsic protein HQ399_14220 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ399_14220 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ399_14225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_14225 PF12729 Four helix bundle sensory module for signal transduction HQ399_14225 PF00672 HAMP domain HQ399_14235 PF03466 LysR substrate binding domain HQ399_14235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_14255 PF00248 Aldo/keto reductase family HQ399_14260 PF07690 Major Facilitator Superfamily HQ399_14265 PF02525 Flavodoxin-like fold HQ399_14280 PF05114 Protein of unknown function (DUF692) HQ399_14300 PF02322 Cytochrome bd terminal oxidase subunit II HQ399_14305 PF01654 Cytochrome bd terminal oxidase subunit I HQ399_14310 PF00392 Bacterial regulatory proteins, gntR family HQ399_14310 PF00155 Aminotransferase class I and II HQ399_14315 PF04391 Protein of unknown function (DUF533) HQ399_14320 PF03061 Thioesterase superfamily HQ399_14325 PF10689 Protein of unknown function (DUF2496) HQ399_14330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_14330 PF03466 LysR substrate binding domain HQ399_14340 PF07690 Major Facilitator Superfamily HQ399_14345 PF00849 RNA pseudouridylate synthase HQ399_14345 PF01479 S4 domain HQ399_14350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ399_14360 PF01844 HNH endonuclease HQ399_14365 PF02508 Rnf-Nqr subunit, membrane protein HQ399_14370 PF04060 Putative Fe-S cluster HQ399_14375 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ399_14375 PF12838 4Fe-4S dicluster domain HQ399_14375 PF13375 RnfC Barrel sandwich hybrid domain HQ399_14375 PF10531 SLBB domain HQ399_14380 PF03116 NQR2, RnfD, RnfE family HQ399_14385 PF04205 FMN-binding domain HQ399_14390 PF02508 Rnf-Nqr subunit, membrane protein HQ399_14395 PF00633 Helix-hairpin-helix motif HQ399_14395 PF10576 Iron-sulfur binding domain of endonuclease III HQ399_14395 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ399_14400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ399_14405 PF18393 MotY N-terminal domain HQ399_14405 PF00691 OmpA family HQ399_14415 PF00141 Peroxidase HQ399_14420 PF07759 Protein of unknown function (DUF1615) HQ399_14430 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ399_14430 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ399_14430 PF02142 MGS-like domain HQ399_14435 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ399_14435 PF00117 Glutamine amidotransferase class-I HQ399_14440 PF01113 Dihydrodipicolinate reductase, N-terminus HQ399_14440 PF05173 Dihydrodipicolinate reductase, C-terminus HQ399_14450 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ399_14455 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ399_14460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ399_14460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_14460 PF01842 ACT domain HQ399_14465 PF01219 Prokaryotic diacylglycerol kinase HQ399_14470 PF00793 DAHP synthetase I family HQ399_14475 PF00005 ABC transporter HQ399_14480 PF01032 FecCD transport family HQ399_14495 PF00437 Type II/IV secretion system protein HQ399_14505 PF01168 Alanine racemase, N-terminal domain HQ399_14505 PF00842 Alanine racemase, C-terminal domain HQ399_14510 PF03741 Integral membrane protein TerC family HQ399_14515 PF00005 ABC transporter HQ399_14515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_14520 PF00005 ABC transporter HQ399_14520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_14525 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_14525 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_14530 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_14535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_14540 PF01914 MarC family integral membrane protein HQ399_14545 PF00171 Aldehyde dehydrogenase family HQ399_14545 PF00465 Iron-containing alcohol dehydrogenase HQ399_14550 PF01709 Transcriptional regulator HQ399_14555 PF02938 GAD domain HQ399_14555 PF00152 tRNA synthetases class II (D, K and N) HQ399_14555 PF01336 OB-fold nucleic acid binding domain HQ399_14565 PF01904 Protein of unknown function DUF72 HQ399_14570 PF13649 Methyltransferase domain HQ399_14575 PF08003 Protein of unknown function (DUF1698) HQ399_14595 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ399_14595 PF00578 AhpC/TSA family HQ399_14600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_14600 PF03466 LysR substrate binding domain HQ399_14605 PF00877 NlpC/P60 family HQ399_14615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_14615 PF03466 LysR substrate binding domain HQ399_14620 PF02447 GntP family permease HQ399_14625 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_14630 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ399_14635 PF12833 Helix-turn-helix domain HQ399_14640 PF01238 Phosphomannose isomerase type I HQ399_14650 PF00672 HAMP domain HQ399_14650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_14675 PF05656 Protein of unknown function (DUF805) HQ399_14680 PF07690 Major Facilitator Superfamily HQ399_14685 PF01040 UbiA prenyltransferase family HQ399_14690 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ399_14695 PF00510 Cytochrome c oxidase subunit III HQ399_14700 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ399_14705 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ399_14705 PF06481 COX Aromatic Rich Motif HQ399_14715 PF00034 Cytochrome c HQ399_14715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ399_14725 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ399_14735 PF00171 Aldehyde dehydrogenase family HQ399_14740 PF08359 YsiA-like protein, C-terminal region HQ399_14740 PF00440 Bacterial regulatory proteins, tetR family HQ399_14750 PF00465 Iron-containing alcohol dehydrogenase HQ399_14765 PF01740 STAS domain HQ399_14765 PF00916 Sulfate permease family HQ399_14770 PF01554 MatE HQ399_14780 PF04325 Protein of unknown function (DUF465) HQ399_14785 PF04337 Protein of unknown function, DUF480 HQ399_14795 PF00127 Copper binding proteins, plastocyanin/azurin family HQ399_14800 PF02424 ApbE family HQ399_14815 PF03372 Endonuclease/Exonuclease/phosphatase family HQ399_14835 PF00005 ABC transporter HQ399_14840 PF00005 ABC transporter HQ399_14845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_14850 PF00873 AcrB/AcrD/AcrF family HQ399_14860 PF00529 HlyD membrane-fusion protein of T1SS HQ399_14860 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_14865 PF00873 AcrB/AcrD/AcrF family HQ399_14875 PF01497 Periplasmic binding protein HQ399_14880 PF00005 ABC transporter HQ399_14885 PF01032 FecCD transport family HQ399_14890 PF01032 FecCD transport family HQ399_14895 PF08021 Siderophore-interacting FAD-binding domain HQ399_14895 PF04954 Siderophore-interacting protein HQ399_14900 PF11849 Domain of unknown function (DUF3369) HQ399_14910 PF00929 Exonuclease HQ399_14915 PF00075 RNase H HQ399_14920 PF08241 Methyltransferase domain HQ399_14925 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ399_14925 PF00753 Metallo-beta-lactamase superfamily HQ399_14930 PF01476 LysM domain HQ399_14930 PF01464 Transglycosylase SLT domain HQ399_14935 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family HQ399_14950 PF00271 Helicase conserved C-terminal domain HQ399_14950 PF00176 SNF2 family N-terminal domain HQ399_14950 PF04434 SWIM zinc finger HQ399_14955 PF13426 PAS domain HQ399_14955 PF00512 His Kinase A (phospho-acceptor) domain HQ399_14955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_14955 PF00672 HAMP domain HQ399_14960 PF00486 Transcriptional regulatory protein, C terminal HQ399_14960 PF00072 Response regulator receiver domain HQ399_14965 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_14965 PF00529 HlyD membrane-fusion protein of T1SS HQ399_14970 PF00873 AcrB/AcrD/AcrF family HQ399_14980 PF17969 L,D-transpeptidase C-terminal domain HQ399_14980 PF01476 LysM domain HQ399_14980 PF03734 L,D-transpeptidase catalytic domain HQ399_14990 PF00939 Sodium:sulfate symporter transmembrane region HQ399_14995 PF01575 MaoC like domain HQ399_15000 PF05971 RNA methyltransferase HQ399_15005 PF00877 NlpC/P60 family HQ399_15010 PF01648 4'-phosphopantetheinyl transferase superfamily HQ399_15015 PF00085 Thioredoxin HQ399_15025 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ399_15030 PF00551 Formyl transferase HQ399_15030 PF01842 ACT domain HQ399_15040 PF13091 PLD-like domain HQ399_15040 PF13396 Phospholipase_D-nuclease N-terminal HQ399_15055 PF01551 Peptidase family M23 HQ399_15055 PF10145 Phage-related minor tail protein HQ399_15055 PF01464 Transglycosylase SLT domain HQ399_15060 PF00230 Major intrinsic protein HQ399_15070 PF00155 Aminotransferase class I and II HQ399_15075 PF03606 C4-dicarboxylate anaerobic carrier HQ399_15080 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ399_15080 PF07055 Enoyl reductase FAD binding domain HQ399_15080 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ399_15085 PF13407 Periplasmic binding protein domain HQ399_15095 PF00300 Histidine phosphatase superfamily (branch 1) HQ399_15100 PF08348 YheO-like PAS domain HQ399_15100 PF13309 HTH domain HQ399_15105 PF03313 Serine dehydratase alpha chain HQ399_15110 PF01042 Endoribonuclease L-PSP HQ399_15120 PF00672 HAMP domain HQ399_15120 PF12729 Four helix bundle sensory module for signal transduction HQ399_15120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_15135 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ399_15135 PF17810 Arginine decarboxylase helical bundle domain HQ399_15135 PF17944 Arginine decarboxylase C-terminal helical extension HQ399_15140 PF01546 Peptidase family M20/M25/M40 HQ399_15140 PF07687 Peptidase dimerisation domain HQ399_15165 PF04264 YceI-like domain HQ399_15170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_15170 PF03466 LysR substrate binding domain HQ399_15180 PF01268 Formate--tetrahydrofolate ligase HQ399_15185 PF00672 HAMP domain HQ399_15185 PF17200 Single Cache domain 2 HQ399_15185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_15190 PF01227 GTP cyclohydrolase I HQ399_15195 PF00994 Probable molybdopterin binding domain HQ399_15195 PF03454 MoeA C-terminal region (domain IV) HQ399_15195 PF03453 MoeA N-terminal region (domain I and II) HQ399_15200 PF00899 ThiF family HQ399_15210 PF06406 StbA protein HQ399_15215 PF00561 alpha/beta hydrolase fold HQ399_15220 PF03459 TOBE domain HQ399_15220 PF00005 ABC transporter HQ399_15225 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_15235 PF02391 MoaE protein HQ399_15240 PF02597 ThiS family HQ399_15245 PF01967 MoaC family HQ399_15250 PF00994 Probable molybdopterin binding domain HQ399_15255 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ399_15260 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) HQ399_15265 PF12801 4Fe-4S binding domain HQ399_15265 PF12837 4Fe-4S binding domain HQ399_15270 PF12800 4Fe-4S binding domain HQ399_15270 PF12838 4Fe-4S dicluster domain HQ399_15275 PF10518 TAT (twin-arginine translocation) pathway signal sequence HQ399_15275 PF00384 Molybdopterin oxidoreductase HQ399_15275 PF01568 Molydopterin dinucleotide binding domain HQ399_15275 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ399_15285 PF12838 4Fe-4S dicluster domain HQ399_15285 PF13187 4Fe-4S dicluster domain HQ399_15290 PF06463 Molybdenum Cofactor Synthesis C HQ399_15290 PF04055 Radical SAM superfamily HQ399_15295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_15295 PF00672 HAMP domain HQ399_15295 PF07730 Histidine kinase HQ399_15295 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ399_15300 PF00196 Bacterial regulatory proteins, luxR family HQ399_15300 PF00072 Response regulator receiver domain HQ399_15310 PF00672 HAMP domain HQ399_15310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_15310 PF00512 His Kinase A (phospho-acceptor) domain HQ399_15310 PF01627 Hpt domain HQ399_15310 PF00072 Response regulator receiver domain HQ399_15310 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ399_15320 PF01933 Uncharacterised protein family UPF0052 HQ399_15330 PF13230 Glutamine amidotransferases class-II HQ399_15335 PF13580 SIS domain HQ399_15340 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ399_15340 PF02770 Acyl-CoA dehydrogenase, middle domain HQ399_15340 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ399_15340 PF09317 Domain of unknown function (DUF1974) HQ399_15345 PF07687 Peptidase dimerisation domain HQ399_15345 PF01546 Peptidase family M20/M25/M40 HQ399_15350 PF03658 RnfH family Ubiquitin HQ399_15355 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ399_15360 PF01668 SmpB protein HQ399_15370 PF02899 Phage integrase, N-terminal SAM-like domain HQ399_15370 PF00589 Phage integrase family HQ399_15405 PF02796 Helix-turn-helix domain of resolvase HQ399_15405 PF00239 Resolvase, N terminal domain HQ399_15410 PF09570 SinI restriction endonuclease HQ399_15415 PF12728 Helix-turn-helix domain HQ399_15415 PF00145 C-5 cytosine-specific DNA methylase HQ399_15425 PF00083 Sugar (and other) transporter HQ399_15430 PF13181 Tetratricopeptide repeat HQ399_15430 PF17128 Domain of unknown function (DUF5107) HQ399_15435 PF00480 ROK family HQ399_15440 PF12838 4Fe-4S dicluster domain HQ399_15440 PF00384 Molybdopterin oxidoreductase HQ399_15440 PF01568 Molydopterin dinucleotide binding domain HQ399_15440 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ399_15440 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ399_15490 PF00440 Bacterial regulatory proteins, tetR family HQ399_15495 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ399_15495 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ399_15495 PF09317 Domain of unknown function (DUF1974) HQ399_15495 PF02770 Acyl-CoA dehydrogenase, middle domain HQ399_15500 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ399_15515 PF02108 Flagellar assembly protein FliH HQ399_15520 PF06578 YOP proteins translocation protein K (YscK) HQ399_15525 PF01514 Secretory protein of YscJ/FliF family HQ399_15530 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ399_15535 PF09025 YopR, type III needle-polymerisation regulator HQ399_15540 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ399_15545 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ399_15555 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ399_15555 PF16693 Inner membrane component of T3SS, periplasmic domain HQ399_15560 PF00263 Bacterial type II and III secretion system protein HQ399_15560 PF03958 Bacterial type II/III secretion system short domain HQ399_15565 PF05932 Tir chaperone protein (CesT) family HQ399_15570 PF16806 Antiactivator protein ExsD HQ399_15575 PF12833 Helix-turn-helix domain HQ399_15590 PF05932 Tir chaperone protein (CesT) family HQ399_15595 PF05844 YopD protein HQ399_15600 PF04888 Secretion system effector C (SseC) like family HQ399_15605 PF07720 Tetratricopeptide repeat HQ399_15610 PF04792 V antigen (LcrV) protein HQ399_15615 PF07216 LcrG protein HQ399_15620 PF09621 Type III secretion system regulator (LcrR) HQ399_15625 PF00771 FHIPEP family HQ399_15645 PF09059 TyeA HQ399_15650 PF07201 HrpJ-like domain HQ399_15655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_15655 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ399_15655 PF18269 T3SS EscN ATPase C-terminal domain HQ399_15665 PF02120 Flagellar hook-length control protein FliK HQ399_15670 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ399_15675 PF00813 FliP family HQ399_15680 PF01313 Bacterial export proteins, family 3 HQ399_15685 PF01311 Bacterial export proteins, family 1 HQ399_15690 PF01312 FlhB HrpN YscU SpaS Family HQ399_15705 PF00155 Aminotransferase class I and II HQ399_15710 PF00367 phosphotransferase system, EIIB HQ399_15710 PF02378 Phosphotransferase system, EIIC HQ399_15715 PF00356 Bacterial regulatory proteins, lacI family HQ399_15715 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ399_15725 PF13580 SIS domain HQ399_15740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_15740 PF02378 Phosphotransferase system, EIIC HQ399_15740 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ399_15745 PF07690 Major Facilitator Superfamily HQ399_15750 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ399_15760 PF00849 RNA pseudouridylate synthase HQ399_15765 PF00293 NUDIX domain HQ399_15775 PF04356 Protein of unknown function (DUF489) HQ399_15780 PF08328 Adenylosuccinate lyase C-terminal HQ399_15780 PF00206 Lyase HQ399_15785 PF08007 Cupin superfamily protein HQ399_15805 PF01593 Flavin containing amine oxidoreductase HQ399_15815 PF03747 ADP-ribosylglycohydrolase HQ399_15825 PF00294 pfkB family carbohydrate kinase HQ399_15845 PF00043 Glutathione S-transferase, C-terminal domain HQ399_15845 PF13417 Glutathione S-transferase, N-terminal domain HQ399_15850 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ399_15850 PF01243 Pyridoxamine 5'-phosphate oxidase HQ399_15855 PF01189 16S rRNA methyltransferase RsmB/F HQ399_15855 PF01029 NusB family HQ399_15860 PF01042 Endoribonuclease L-PSP HQ399_15865 PF01228 Glycine radical HQ399_15865 PF02901 Pyruvate formate lyase-like HQ399_15870 PF00871 Acetokinase family HQ399_15875 PF03222 Tryptophan/tyrosine permease family HQ399_15880 PF00291 Pyridoxal-phosphate dependent enzyme HQ399_15885 PF00462 Glutaredoxin HQ399_15890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ399_15890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ399_15895 PF04333 MlaA lipoprotein HQ399_15900 PF03918 Cytochrome C biogenesis protein HQ399_15905 PF03918 Cytochrome C biogenesis protein HQ399_15910 PF08534 Redoxin HQ399_15915 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal HQ399_15915 PF01578 Cytochrome C assembly protein HQ399_15920 PF03100 CcmE HQ399_15925 PF04995 Heme exporter protein D (CcmD) HQ399_15930 PF01578 Cytochrome C assembly protein HQ399_15935 PF03379 CcmB protein HQ399_15940 PF00005 ABC transporter HQ399_15950 PF01584 CheW-like domain HQ399_15960 PF13614 AAA domain HQ399_15965 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ399_15965 PF00691 OmpA family HQ399_15970 PF01618 MotA/TolQ/ExbB proton channel family HQ399_15975 PF00072 Response regulator receiver domain HQ399_15975 PF01339 CheB methylesterase HQ399_15980 PF01584 CheW-like domain HQ399_15980 PF02895 Signal transducing histidine kinase, homodimeric domain HQ399_15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_15980 PF01627 Hpt domain HQ399_15980 PF00072 Response regulator receiver domain HQ399_15985 PF04344 Chemotaxis phosphatase, CheZ HQ399_15990 PF00072 Response regulator receiver domain HQ399_15995 PF04542 Sigma-70 region 2 HQ399_15995 PF04539 Sigma-70 region 3 HQ399_15995 PF04545 Sigma-70, region 4 HQ399_16000 PF10609 NUBPL iron-transfer P-loop NTPase HQ399_16005 PF00448 SRP54-type protein, GTPase domain HQ399_16010 PF00771 FHIPEP family HQ399_16015 PF01312 FlhB HrpN YscU SpaS Family HQ399_16020 PF01311 Bacterial export proteins, family 1 HQ399_16025 PF01313 Bacterial export proteins, family 3 HQ399_16030 PF00813 FliP family HQ399_16035 PF04347 Flagellar biosynthesis protein, FliO HQ399_16040 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ399_16045 PF02154 Flagellar motor switch protein FliM HQ399_16045 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ399_16065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_16065 PF18269 T3SS EscN ATPase C-terminal domain HQ399_16075 PF14842 FliG N-terminal domain HQ399_16075 PF01706 FliG C-terminal domain HQ399_16075 PF14841 FliG middle domain HQ399_16080 PF01514 Secretory protein of YscJ/FliF family HQ399_16080 PF08345 Flagellar M-ring protein C-terminal HQ399_16085 PF02049 Flagellar hook-basal body complex protein FliE HQ399_16095 PF00224 Pyruvate kinase, barrel domain HQ399_16095 PF02887 Pyruvate kinase, alpha/beta domain HQ399_16100 PF01418 Helix-turn-helix domain, rpiR family HQ399_16100 PF01380 SIS domain HQ399_16105 PF02685 Glucokinase HQ399_16130 PF00672 HAMP domain HQ399_16130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_16135 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ399_16140 PF00860 Permease family HQ399_16150 PF16998 17 kDa outer membrane surface antigen HQ399_16150 PF05433 Glycine zipper 2TM domain HQ399_16155 PF00390 Malic enzyme, N-terminal domain HQ399_16155 PF03949 Malic enzyme, NAD binding domain HQ399_16160 PF00072 Response regulator receiver domain HQ399_16160 PF00486 Transcriptional regulatory protein, C terminal HQ399_16170 PF13247 4Fe-4S dicluster domain HQ399_16175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ399_16175 PF01568 Molydopterin dinucleotide binding domain HQ399_16175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ399_16175 PF12838 4Fe-4S dicluster domain HQ399_16175 PF00384 Molybdopterin oxidoreductase HQ399_16175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ399_16175 PF12838 4Fe-4S dicluster domain HQ399_16175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ399_16175 PF01568 Molydopterin dinucleotide binding domain HQ399_16175 PF00384 Molybdopterin oxidoreductase HQ399_16210 PF02634 FdhD/NarQ family HQ399_16220 PF00512 His Kinase A (phospho-acceptor) domain HQ399_16220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_16220 PF00989 PAS fold HQ399_16225 PF02954 Bacterial regulatory protein, Fis family HQ399_16225 PF00072 Response regulator receiver domain HQ399_16225 PF00158 Sigma-54 interaction domain HQ399_16230 PF12849 PBP superfamily domain HQ399_16235 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_16240 PF00005 ABC transporter HQ399_16245 PF12804 MobA-like NTP transferase domain HQ399_16250 PF03453 MoeA N-terminal region (domain I and II) HQ399_16250 PF00994 Probable molybdopterin binding domain HQ399_16250 PF03454 MoeA C-terminal region (domain IV) HQ399_16255 PF04632 Fusaric acid resistance protein family HQ399_16270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_16270 PF08447 PAS fold HQ399_16270 PF13426 PAS domain HQ399_16280 PF10725 Protein of unknown function (DUF2517) HQ399_16300 PF00512 His Kinase A (phospho-acceptor) domain HQ399_16300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_16300 PF00072 Response regulator receiver domain HQ399_16300 PF09308 LuxQ, periplasmic HQ399_16305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_16310 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_16315 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_16315 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ399_16320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_16320 PF00005 ABC transporter HQ399_16325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ399_16325 PF00005 ABC transporter HQ399_16335 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ399_16340 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ399_16340 PF02838 Glycosyl hydrolase family 20, domain 2 HQ399_16355 PF01396 Topoisomerase DNA binding C4 zinc finger HQ399_16355 PF01751 Toprim domain HQ399_16355 PF08272 Topoisomerase I zinc-ribbon-like HQ399_16355 PF01131 DNA topoisomerase HQ399_16360 PF04996 Succinylarginine dihydrolase HQ399_16385 PF00672 HAMP domain HQ399_16385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_16385 PF00512 His Kinase A (phospho-acceptor) domain HQ399_16385 PF01627 Hpt domain HQ399_16385 PF00072 Response regulator receiver domain HQ399_16385 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ399_16390 PF00196 Bacterial regulatory proteins, luxR family HQ399_16390 PF00072 Response regulator receiver domain HQ399_16395 PF00563 EAL domain HQ399_16395 PF01590 GAF domain HQ399_16395 PF00990 Diguanylate cyclase, GGDEF domain HQ399_16395 PF00989 PAS fold HQ399_16400 PF16325 Peptidase family U32 C-terminal domain HQ399_16400 PF01136 Peptidase family U32 HQ399_16405 PF12838 4Fe-4S dicluster domain HQ399_16415 PF02635 DsrE/DsrF-like family HQ399_16420 PF00990 Diguanylate cyclase, GGDEF domain HQ399_16425 PF07690 Major Facilitator Superfamily HQ399_16430 PF01343 Peptidase family S49 HQ399_16430 PF08496 Peptidase family S49 N-terminal HQ399_16435 PF00106 short chain dehydrogenase HQ399_16440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_16440 PF03466 LysR substrate binding domain HQ399_16445 PF07690 Major Facilitator Superfamily HQ399_16450 PF00155 Aminotransferase class I and II HQ399_16465 PF00709 Adenylosuccinate synthetase HQ399_16470 PF01161 Phosphatidylethanolamine-binding protein HQ399_16480 PF01204 Trehalase HQ399_16490 PF03167 Uracil DNA glycosylase superfamily HQ399_16500 PF01228 Glycine radical HQ399_16505 PF00375 Sodium:dicarboxylate symporter family HQ399_16510 PF00793 DAHP synthetase I family HQ399_16515 PF13369 Transglutaminase-like superfamily HQ399_16525 PF13847 Methyltransferase domain HQ399_16525 PF17827 PrmC N-terminal domain HQ399_16530 PF03462 PCRF domain HQ399_16530 PF00472 RF-1 domain HQ399_16535 PF01488 Shikimate / quinate 5-dehydrogenase HQ399_16535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ399_16535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ399_16540 PF03550 Outer membrane lipoprotein LolB HQ399_16545 PF08544 GHMP kinases C terminal HQ399_16545 PF00288 GHMP kinases N terminal domain HQ399_16555 PF14572 Phosphoribosyl synthetase-associated domain HQ399_16555 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ399_16560 PF02872 5'-nucleotidase, C-terminal domain HQ399_16560 PF00149 Calcineurin-like phosphoesterase HQ399_16565 PF01195 Peptidyl-tRNA hydrolase HQ399_16570 PF06071 Protein of unknown function (DUF933) HQ399_16570 PF01926 50S ribosome-binding GTPase HQ399_16575 PF00171 Aldehyde dehydrogenase family HQ399_16580 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_16585 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_16590 PF00005 ABC transporter HQ399_16590 PF08402 TOBE domain HQ399_16595 PF13416 Bacterial extracellular solute-binding protein HQ399_16600 PF03466 LysR substrate binding domain HQ399_16600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_16645 PF03600 Citrate transporter HQ399_16645 PF02080 TrkA-C domain HQ399_16650 PF04973 Nicotinamide mononucleotide transporter HQ399_16655 PF01048 Phosphorylase superfamily HQ399_16665 PF04266 ASCH domain HQ399_16670 PF07859 alpha/beta hydrolase fold HQ399_16680 PF16657 Maltogenic Amylase, C-terminal domain HQ399_16680 PF00128 Alpha amylase, catalytic domain HQ399_16685 PF10371 Domain of unknown function HQ399_16685 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ399_16685 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ399_16685 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ399_16685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_16690 PF07690 Major Facilitator Superfamily HQ399_16695 PF13419 Haloacid dehalogenase-like hydrolase HQ399_16710 PF00171 Aldehyde dehydrogenase family HQ399_16715 PF04958 Arginine N-succinyltransferase beta subunit HQ399_16720 PF00202 Aminotransferase class-III HQ399_16725 PF00117 Glutamine amidotransferase class-I HQ399_16735 PF00579 tRNA synthetases class I (W and Y) HQ399_16740 PF13419 Haloacid dehalogenase-like hydrolase HQ399_16745 PF00834 Ribulose-phosphate 3 epimerase family HQ399_16750 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ399_16760 PF01761 3-dehydroquinate synthase HQ399_16765 PF01202 Shikimate kinase HQ399_16770 PF07660 Secretin and TonB N terminus short domain HQ399_16770 PF11741 AMIN domain HQ399_16770 PF00263 Bacterial type II and III secretion system protein HQ399_16770 PF03958 Bacterial type II/III secretion system short domain HQ399_16780 PF04350 Pilus assembly protein, PilO HQ399_16790 PF11104 Type IV pilus assembly protein PilM; HQ399_16795 PF17092 Penicillin-binding protein OB-like domain HQ399_16795 PF00912 Transglycosylase HQ399_16795 PF00905 Penicillin binding protein transpeptidase domain HQ399_16800 PF03466 LysR substrate binding domain HQ399_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_16805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_16805 PF00672 HAMP domain HQ399_16805 PF02743 Cache domain HQ399_16820 PF03466 LysR substrate binding domain HQ399_16820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_16830 PF01551 Peptidase family M23 HQ399_16830 PF01476 LysM domain HQ399_16830 PF08525 Opacity-associated protein A N-terminal motif HQ399_16840 PF00924 Mechanosensitive ion channel HQ399_16840 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ399_16840 PF12795 Mechanosensitive ion channel porin domain HQ399_16845 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ399_16850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_16850 PF00672 HAMP domain HQ399_16850 PF02743 Cache domain HQ399_16855 PF02910 Fumarate reductase flavoprotein C-term HQ399_16855 PF00890 FAD binding domain HQ399_16860 PF13183 4Fe-4S dicluster domain HQ399_16860 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ399_16865 PF02300 Fumarate reductase subunit C HQ399_16870 PF02313 Fumarate reductase subunit D HQ399_16875 PF07670 Nucleoside recognition HQ399_16880 PF07670 Nucleoside recognition HQ399_16885 PF01546 Peptidase family M20/M25/M40 HQ399_16885 PF07687 Peptidase dimerisation domain HQ399_16895 PF06224 Winged helix DNA-binding domain HQ399_16900 PF17932 Tetracyclin repressor-like, C-terminal domain HQ399_16900 PF00440 Bacterial regulatory proteins, tetR family HQ399_16910 PF01266 FAD dependent oxidoreductase HQ399_16925 PF13193 AMP-binding enzyme C-terminal domain HQ399_16925 PF00501 AMP-binding enzyme HQ399_16945 PF00486 Transcriptional regulatory protein, C terminal HQ399_16945 PF00072 Response regulator receiver domain HQ399_16950 PF00512 His Kinase A (phospho-acceptor) domain HQ399_16950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_16950 PF08521 Two-component sensor kinase N-terminal HQ399_16960 PF00478 IMP dehydrogenase / GMP reductase domain HQ399_16970 PF09285 Elongation factor P, C-terminal HQ399_16970 PF08207 Elongation factor P (EF-P) KOW-like domain HQ399_16970 PF01132 Elongation factor P (EF-P) OB domain HQ399_16980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_16980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ399_16990 PF03466 LysR substrate binding domain HQ399_16990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_16995 PF01979 Amidohydrolase family HQ399_16995 PF13382 Adenine deaminase C-terminal domain HQ399_17000 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ399_17005 PF03606 C4-dicarboxylate anaerobic carrier HQ399_17015 PF13419 Haloacid dehalogenase-like hydrolase HQ399_17025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_17025 PF03466 LysR substrate binding domain HQ399_17030 PF00990 Diguanylate cyclase, GGDEF domain HQ399_17030 PF05230 MASE2 domain HQ399_17040 PF00857 Isochorismatase family HQ399_17045 PF01494 FAD binding domain HQ399_17050 PF04055 Radical SAM superfamily HQ399_17050 PF01938 TRAM domain HQ399_17050 PF00919 Uncharacterized protein family UPF0004 HQ399_17055 PF02562 PhoH-like protein HQ399_17060 PF02130 Uncharacterized protein family UPF0054 HQ399_17065 PF00571 CBS domain HQ399_17065 PF03471 Transporter associated domain HQ399_17070 PF00795 Carbon-nitrogen hydrolase HQ399_17075 PF02272 DHHA1 domain HQ399_17075 PF17768 RecJ OB domain HQ399_17075 PF01368 DHH family HQ399_17085 PF01741 Large-conductance mechanosensitive channel, MscL HQ399_17090 PF02899 Phage integrase, N-terminal SAM-like domain HQ399_17090 PF00589 Phage integrase family HQ399_17095 PF00258 Flavodoxin HQ399_17100 PF01523 Putative modulator of DNA gyrase HQ399_17105 PF01523 Putative modulator of DNA gyrase HQ399_17110 PF02463 RecF/RecN/SMC N terminal domain HQ399_17115 PF07295 Zinc-ribbon containing domain HQ399_17120 PF00133 tRNA synthetases class I (I, L, M and V) HQ399_17120 PF13603 Leucyl-tRNA synthetase, Domain 2 HQ399_17120 PF08264 Anticodon-binding domain of tRNA HQ399_17135 PF01467 Cytidylyltransferase-like HQ399_17145 PF02590 Predicted SPOUT methyltransferase HQ399_17150 PF03717 Penicillin-binding Protein dimerisation domain HQ399_17150 PF00905 Penicillin binding protein transpeptidase domain HQ399_17155 PF01098 Cell cycle protein HQ399_17160 PF13406 Transglycosylase SLT domain HQ399_17165 PF03330 Lytic transglycolase HQ399_17165 PF05036 Sporulation related domain HQ399_17170 PF07943 Penicillin-binding protein 5, C-terminal domain HQ399_17170 PF00768 D-alanyl-D-alanine carboxypeptidase HQ399_17175 PF04359 Protein of unknown function (DUF493) HQ399_17180 PF03099 Biotin/lipoate A/B protein ligase family HQ399_17185 PF04055 Radical SAM superfamily HQ399_17185 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ399_17200 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ399_17200 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ399_17205 PF07023 Protein of unknown function (DUF1315) HQ399_17210 PF00710 Asparaginase, N-terminal HQ399_17210 PF17763 Glutaminase/Asparaginase C-terminal domain HQ399_17215 PF03616 Sodium/glutamate symporter HQ399_17220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_17220 PF02743 Cache domain HQ399_17220 PF00672 HAMP domain HQ399_17230 PF01336 OB-fold nucleic acid binding domain HQ399_17230 PF00152 tRNA synthetases class II (D, K and N) HQ399_17235 PF00667 FAD binding domain HQ399_17235 PF00258 Flavodoxin HQ399_17235 PF00175 Oxidoreductase NAD-binding domain HQ399_17240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ399_17240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ399_17245 PF01507 Phosphoadenosine phosphosulfate reductase family HQ399_17250 PF00186 Dihydrofolate reductase HQ399_17255 PF12821 Threonine/Serine exporter, ThrE HQ399_17260 PF06738 Putative threonine/serine exporter HQ399_17270 PF00994 Probable molybdopterin binding domain HQ399_17280 PF06004 Bacterial protein of unknown function (DUF903) HQ399_17285 PF00581 Rhodanese-like domain HQ399_17290 PF04960 Glutaminase HQ399_17295 PF04320 Protein with unknown function (DUF469) HQ399_17300 PF02390 Putative methyltransferase HQ399_17305 PF00155 Aminotransferase class I and II HQ399_17310 PF00563 EAL domain HQ399_17310 PF12792 CSS motif domain associated with EAL HQ399_17315 PF08338 Domain of unknown function (DUF1731) HQ399_17315 PF01370 NAD dependent epimerase/dehydratase family HQ399_17325 PF00005 ABC transporter HQ399_17330 PF13472 GDSL-like Lipase/Acylhydrolase family HQ399_17335 PF01584 CheW-like domain HQ399_17335 PF00072 Response regulator receiver domain HQ399_17340 PF06483 Chitinase C HQ399_17340 PF00704 Glycosyl hydrolases family 18 HQ399_17375 PF18416 N-acetylglucosamine binding protein domain 2 HQ399_17375 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ399_17380 PF17945 Beta/Gamma crystallin HQ399_17380 PF12561 ToxR activated gene A lipoprotein domain HQ399_17385 PF08329 Chitinase A, N-terminal domain HQ399_17385 PF00704 Glycosyl hydrolases family 18 HQ399_17390 PF00072 Response regulator receiver domain HQ399_17390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ399_17390 PF00672 HAMP domain HQ399_17390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_17390 PF00512 His Kinase A (phospho-acceptor) domain HQ399_17390 PF01627 Hpt domain HQ399_17395 PF12832 MFS_1 like family HQ399_17415 PF04717 Type VI secretion system, phage-baseplate injector HQ399_17420 PF05638 Type VI secretion system effector, Hcp HQ399_17425 PF00196 Bacterial regulatory proteins, luxR family HQ399_17425 PF03472 Autoinducer binding domain HQ399_17430 PF07715 TonB-dependent Receptor Plug Domain HQ399_17430 PF00593 TonB dependent receptor HQ399_17450 PF01243 Pyridoxamine 5'-phosphate oxidase HQ399_17455 PF06228 Haem utilisation ChuX/HutX HQ399_17465 PF01032 FecCD transport family HQ399_17470 PF00005 ABC transporter HQ399_17485 PF04397 LytTr DNA-binding domain HQ399_17485 PF00072 Response regulator receiver domain HQ399_17490 PF02554 Carbon starvation protein CstA HQ399_17490 PF13722 5TM C-terminal transporter carbon starvation CstA HQ399_17495 PF03575 Peptidase family S51 HQ399_17500 PF01894 Uncharacterised protein family UPF0047 HQ399_17505 PF00842 Alanine racemase, C-terminal domain HQ399_17505 PF01168 Alanine racemase, N-terminal domain HQ399_17510 PF00772 DnaB-like helicase N terminal domain HQ399_17510 PF03796 DnaB-like helicase C terminal domain HQ399_17525 PF02872 5'-nucleotidase, C-terminal domain HQ399_17525 PF00149 Calcineurin-like phosphoesterase HQ399_17545 PF02954 Bacterial regulatory protein, Fis family HQ399_17545 PF00072 Response regulator receiver domain HQ399_17545 PF00158 Sigma-54 interaction domain HQ399_17550 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ399_17550 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_17560 PF04102 SlyX HQ399_17565 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ399_17570 PF09526 Probable metal-binding protein (DUF2387) HQ399_17580 PF00072 Response regulator receiver domain HQ399_17580 PF01584 CheW-like domain HQ399_17585 PF00561 alpha/beta hydrolase fold HQ399_17590 PF00990 Diguanylate cyclase, GGDEF domain HQ399_17590 PF01590 GAF domain HQ399_17590 PF00563 EAL domain HQ399_17590 PF00360 Phytochrome region HQ399_17595 PF06794 Uncharacterised protein family (UPF0270) HQ399_17600 PF00485 Phosphoribulokinase / Uridine kinase family HQ399_17615 PF02566 OsmC-like protein HQ399_17620 PF00027 Cyclic nucleotide-binding domain HQ399_17620 PF13545 Crp-like helix-turn-helix domain HQ399_17625 PF08241 Methyltransferase domain HQ399_17630 PF00267 Gram-negative porin HQ399_17640 PF00582 Universal stress protein family HQ399_17655 PF00294 pfkB family carbohydrate kinase HQ399_17660 PF04227 Indigoidine synthase A like protein HQ399_17690 PF00550 Phosphopantetheine attachment site HQ399_17695 PF00550 Phosphopantetheine attachment site HQ399_17705 PF00501 AMP-binding enzyme HQ399_17705 PF13193 AMP-binding enzyme C-terminal domain HQ399_17710 PF07977 FabA-like domain HQ399_17720 PF00221 Aromatic amino acid lyase HQ399_17745 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ399_17745 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ399_17750 PF07977 FabA-like domain HQ399_17760 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ399_17760 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ399_17765 PF00561 alpha/beta hydrolase fold HQ399_17780 PF06877 Regulator of ribonuclease activity B HQ399_17785 PF03707 Bacterial signalling protein N terminal repeat HQ399_17785 PF00990 Diguanylate cyclase, GGDEF domain HQ399_17785 PF00563 EAL domain HQ399_17860 PF06826 Predicted Permease Membrane Region HQ399_17860 PF02080 TrkA-C domain HQ399_17865 PF03006 Haemolysin-III related HQ399_17870 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ399_17875 PF04279 Intracellular septation protein A HQ399_17880 PF03795 YCII-related domain HQ399_17885 PF00459 Inositol monophosphatase family HQ399_17890 PF00455 DeoR C terminal sensor domain HQ399_17890 PF08220 DeoR-like helix-turn-helix domain HQ399_17895 PF08013 Tagatose 6 phosphate kinase HQ399_17900 PF01380 SIS domain HQ399_17905 PF03830 PTS system sorbose subfamily IIB component HQ399_17910 PF03609 PTS system sorbose-specific iic component HQ399_17915 PF03613 PTS system mannose/fructose/sorbose family IID component HQ399_17920 PF03610 PTS system fructose IIA component HQ399_17925 PF01979 Amidohydrolase family HQ399_17930 PF01116 Fructose-bisphosphate aldolase class-II HQ399_17935 PF00367 phosphotransferase system, EIIB HQ399_17935 PF02378 Phosphotransferase system, EIIC HQ399_17940 PF00155 Aminotransferase class I and II HQ399_17945 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ399_17950 PF02565 Recombination protein O C terminal HQ399_17950 PF11967 Recombination protein O N terminal HQ399_17955 PF07650 KH domain HQ399_17955 PF01926 50S ribosome-binding GTPase HQ399_17960 PF14622 Ribonuclease-III-like HQ399_17960 PF00035 Double-stranded RNA binding motif HQ399_17965 PF10502 Signal peptidase, peptidase S26 HQ399_17970 PF00679 Elongation factor G C-terminus HQ399_17970 PF00009 Elongation factor Tu GTP binding domain HQ399_17970 PF03144 Elongation factor Tu domain 2 HQ399_17970 PF06421 GTP-binding protein LepA C-terminus HQ399_17980 PF17188 MucB/RseB C-terminal domain HQ399_17980 PF03888 MucB/RseB N-terminal domain HQ399_17985 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ399_17985 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ399_17990 PF08281 Sigma-70, region 4 HQ399_17990 PF04542 Sigma-70 region 2 HQ399_17995 PF00890 FAD binding domain HQ399_17995 PF02910 Fumarate reductase flavoprotein C-term HQ399_18005 PF03937 Flavinator of succinate dehydrogenase HQ399_18015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_18015 PF03466 LysR substrate binding domain HQ399_18030 PF03091 CutA1 divalent ion tolerance protein HQ399_18035 PF11412 Disulphide bond corrector protein DsbC HQ399_18035 PF02683 Cytochrome C biogenesis protein transmembrane region HQ399_18055 PF01266 FAD dependent oxidoreductase HQ399_18060 PF01116 Fructose-bisphosphate aldolase class-II HQ399_18065 PF00162 Phosphoglycerate kinase HQ399_18070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ399_18070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ399_18075 PF00480 ROK family HQ399_18080 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ399_18085 PF09297 NADH pyrophosphatase zinc ribbon domain HQ399_18085 PF00293 NUDIX domain HQ399_18090 PF00171 Aldehyde dehydrogenase family HQ399_18090 PF01619 Proline dehydrogenase HQ399_18090 PF14850 DNA-binding domain of Proline dehydrogenase HQ399_18090 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ399_18095 PF08239 Bacterial SH3 domain HQ399_18100 PF00027 Cyclic nucleotide-binding domain HQ399_18100 PF00520 Ion transport protein HQ399_18105 PF02743 Cache domain HQ399_18105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_18105 PF00672 HAMP domain HQ399_18115 PF08335 GlnD PII-uridylyltransferase HQ399_18115 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ399_18135 PF00072 Response regulator receiver domain HQ399_18135 PF00486 Transcriptional regulatory protein, C terminal HQ399_18140 PF00512 His Kinase A (phospho-acceptor) domain HQ399_18140 PF00672 HAMP domain HQ399_18140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_18150 PF00293 NUDIX domain HQ399_18150 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ399_18150 PF09297 NADH pyrophosphatase zinc ribbon domain HQ399_18180 PF00445 Ribonuclease T2 family HQ399_18190 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ399_18200 PF00990 Diguanylate cyclase, GGDEF domain HQ399_18205 PF00271 Helicase conserved C-terminal domain HQ399_18205 PF00270 DEAD/DEAH box helicase HQ399_18215 PF00939 Sodium:sulfate symporter transmembrane region HQ399_18220 PF00753 Metallo-beta-lactamase superfamily HQ399_18230 PF01425 Amidase HQ399_18235 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ399_18240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_18240 PF03466 LysR substrate binding domain HQ399_18245 PF04480 Protein of unknown function (DUF559) HQ399_18255 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ399_18260 PF04542 Sigma-70 region 2 HQ399_18260 PF00140 Sigma-70 factor, region 1.2 HQ399_18260 PF04539 Sigma-70 region 3 HQ399_18260 PF04545 Sigma-70, region 4 HQ399_18265 PF01476 LysM domain HQ399_18265 PF01551 Peptidase family M23 HQ399_18270 PF09335 SNARE associated Golgi protein HQ399_18280 PF01975 Survival protein SurE HQ399_18285 PF01142 tRNA pseudouridine synthase D (TruD) HQ399_18290 PF02542 YgbB family HQ399_18295 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ399_18300 PF04977 Septum formation initiator HQ399_18305 PF00474 Sodium:solute symporter family HQ399_18315 PF03734 L,D-transpeptidase catalytic domain HQ399_18315 PF17969 L,D-transpeptidase C-terminal domain HQ399_18320 PF00924 Mechanosensitive ion channel HQ399_18325 PF00871 Acetokinase family HQ399_18330 PF04074 YhcH/YjgK/YiaL HQ399_18340 PF01177 Asp/Glu/Hydantoin racemase HQ399_18345 PF01810 LysE type translocator HQ399_18355 PF00155 Aminotransferase class I and II HQ399_18355 PF00392 Bacterial regulatory proteins, gntR family HQ399_18375 PF00005 ABC transporter HQ399_18375 PF12848 ABC transporter HQ399_18385 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ399_18395 PF00561 alpha/beta hydrolase fold HQ399_18410 PF03952 Enolase, N-terminal domain HQ399_18410 PF00113 Enolase, C-terminal TIM barrel domain HQ399_18415 PF06418 CTP synthase N-terminus HQ399_18415 PF00117 Glutamine amidotransferase class-I HQ399_18420 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ399_18425 PF13291 ACT domain HQ399_18425 PF04607 Region found in RelA / SpoT proteins HQ399_18425 PF02824 TGS domain HQ399_18430 PF01938 TRAM domain HQ399_18430 PF05958 tRNA (Uracil-5-)-methyltransferase HQ399_18435 PF00672 HAMP domain HQ399_18435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_18435 PF01627 Hpt domain HQ399_18435 PF00512 His Kinase A (phospho-acceptor) domain HQ399_18435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ399_18435 PF00072 Response regulator receiver domain HQ399_18440 PF07308 Protein of unknown function (DUF1456) HQ399_18445 PF01510 N-acetylmuramoyl-L-alanine amidase HQ399_18450 PF00210 Ferritin-like domain HQ399_18455 PF03063 Prismane/CO dehydrogenase family HQ399_18460 PF00970 Oxidoreductase FAD-binding domain HQ399_18460 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ399_18460 PF00175 Oxidoreductase NAD-binding domain HQ399_18465 PF01370 NAD dependent epimerase/dehydratase family HQ399_18470 PF01569 PAP2 superfamily HQ399_18475 PF08245 Mur ligase middle domain HQ399_18475 PF02875 Mur ligase family, glutamate ligase domain HQ399_18475 PF01225 Mur ligase family, catalytic domain HQ399_18480 PF02441 Flavoprotein HQ399_18485 PF00440 Bacterial regulatory proteins, tetR family HQ399_18490 PF00156 Phosphoribosyl transferase domain HQ399_18495 PF00005 ABC transporter HQ399_18500 PF01061 ABC-2 type transporter HQ399_18505 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component HQ399_18510 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ399_18530 PF00375 Sodium:dicarboxylate symporter family HQ399_18540 PF02569 Pantoate-beta-alanine ligase HQ399_18545 PF02548 Ketopantoate hydroxymethyltransferase HQ399_18550 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ399_18555 PF01743 Poly A polymerase head domain HQ399_18555 PF12626 Polymerase A arginine-rich C-terminus HQ399_18555 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ399_18560 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ399_18565 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ399_18570 PF03749 Sugar fermentation stimulation protein RE domain HQ399_18570 PF17746 SfsA N-terminal OB domain HQ399_18580 PF00270 DEAD/DEAH box helicase HQ399_18580 PF04408 Helicase associated domain (HA2) HQ399_18580 PF00271 Helicase conserved C-terminal domain HQ399_18580 PF08482 ATP-dependent helicase C-terminal HQ399_18585 PF00912 Transglycosylase HQ399_18585 PF00905 Penicillin binding protein transpeptidase domain HQ399_18585 PF14814 Bifunctional transglycosylase second domain HQ399_18590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ399_18595 PF00893 Small Multidrug Resistance protein HQ399_18600 PF00893 Small Multidrug Resistance protein HQ399_18610 PF11849 Domain of unknown function (DUF3369) HQ399_18615 PF00719 Inorganic pyrophosphatase HQ399_18630 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ399_18645 PF00005 ABC transporter HQ399_18665 PF17200 Single Cache domain 2 HQ399_18665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_18665 PF00672 HAMP domain HQ399_18685 PF00009 Elongation factor Tu GTP binding domain HQ399_18690 PF01507 Phosphoadenosine phosphosulfate reductase family HQ399_18695 PF10414 Sirohaem synthase dimerisation region HQ399_18695 PF14824 Sirohaem biosynthesis protein central HQ399_18695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ399_18700 PF01145 SPFH domain / Band 7 family HQ399_18700 PF16200 C-terminal region of band_7 HQ399_18705 PF01957 NfeD-like C-terminal, partner-binding HQ399_18710 PF00672 HAMP domain HQ399_18710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_18715 PF02445 Quinolinate synthetase A protein HQ399_18720 PF01263 Aldose 1-epimerase HQ399_18725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ399_18725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ399_18730 PF02446 4-alpha-glucanotransferase HQ399_18735 PF00128 Alpha amylase, catalytic domain HQ399_18735 PF02806 Alpha amylase, C-terminal all-beta domain HQ399_18735 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ399_18740 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ399_18740 PF00128 Alpha amylase, catalytic domain HQ399_18745 PF01641 SelR domain HQ399_18755 PF00293 NUDIX domain HQ399_18765 PF01037 Lrp/AsnC ligand binding domain HQ399_18775 PF07690 Major Facilitator Superfamily HQ399_18795 PF00209 Sodium:neurotransmitter symporter family HQ399_18805 PF00209 Sodium:neurotransmitter symporter family HQ399_18870 PF13174 Tetratricopeptide repeat HQ399_18870 PF16331 TolA binding protein trimerisation HQ399_18875 PF00691 OmpA family HQ399_18880 PF07676 WD40-like Beta Propeller Repeat HQ399_18880 PF04052 TolB amino-terminal domain HQ399_18890 PF02472 Biopolymer transport protein ExbD/TolR HQ399_18895 PF01618 MotA/TolQ/ExbB proton channel family HQ399_18900 PF03061 Thioesterase superfamily HQ399_18905 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ399_18910 PF08173 Membrane bound YbgT-like protein HQ399_18915 PF02322 Cytochrome bd terminal oxidase subunit II HQ399_18920 PF01654 Cytochrome bd terminal oxidase subunit I HQ399_18925 PF05491 RuvB C-terminal winged helix domain HQ399_18925 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ399_18925 PF17864 RuvB AAA lid domain HQ399_18930 PF07499 RuvA, C-terminal domain HQ399_18930 PF01330 RuvA N terminal domain HQ399_18935 PF12729 Four helix bundle sensory module for signal transduction HQ399_18935 PF00672 HAMP domain HQ399_18935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_18940 PF01810 LysE type translocator HQ399_18945 PF03472 Autoinducer binding domain HQ399_18945 PF00196 Bacterial regulatory proteins, luxR family HQ399_18950 PF00765 Autoinducer synthase HQ399_18955 PF03466 LysR substrate binding domain HQ399_18955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_18960 PF00773 RNB domain HQ399_18960 PF17876 Cold shock domain HQ399_18960 PF08206 Ribonuclease B OB domain HQ399_18965 PF00990 Diguanylate cyclase, GGDEF domain HQ399_18965 PF00563 EAL domain HQ399_18965 PF01590 GAF domain HQ399_18965 PF00360 Phytochrome region HQ399_18975 PF13419 Haloacid dehalogenase-like hydrolase HQ399_18980 PF17209 Hfq protein HQ399_18985 PF04403 Paraquat-inducible protein A HQ399_18990 PF02470 MlaD protein HQ399_18995 PF03886 ABC-type transport auxiliary lipoprotein component HQ399_19000 PF05958 tRNA (Uracil-5-)-methyltransferase HQ399_19000 PF01938 TRAM domain HQ399_19005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ399_19005 PF04073 Aminoacyl-tRNA editing domain HQ399_19005 PF03129 Anticodon binding domain HQ399_19010 PF00106 short chain dehydrogenase HQ399_19025 PF00378 Enoyl-CoA hydratase/isomerase HQ399_19030 PF10952 Protein of unknown function (DUF2753) HQ399_19035 PF00132 Bacterial transferase hexapeptide (six repeats) HQ399_19045 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_19055 PF08447 PAS fold HQ399_19055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_19060 PF01207 Dihydrouridine synthase (Dus) HQ399_19065 PF01475 Ferric uptake regulator family HQ399_19080 PF05525 Branched-chain amino acid transport protein HQ399_19085 PF05525 Branched-chain amino acid transport protein HQ399_19095 PF00271 Helicase conserved C-terminal domain HQ399_19095 PF00270 DEAD/DEAH box helicase HQ399_19100 PF13673 Acetyltransferase (GNAT) domain HQ399_19110 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ399_19110 PF00588 SpoU rRNA Methylase family HQ399_19115 PF08206 Ribonuclease B OB domain HQ399_19115 PF08461 Ribonuclease R winged-helix domain HQ399_19115 PF17876 Cold shock domain HQ399_19115 PF00575 S1 RNA binding domain HQ399_19115 PF00773 RNB domain HQ399_19120 PF00990 Diguanylate cyclase, GGDEF domain HQ399_19125 PF01389 OmpA-like transmembrane domain HQ399_19125 PF00691 OmpA family HQ399_19130 PF00657 GDSL-like Lipase/Acylhydrolase HQ399_19140 PF01464 Transglycosylase SLT domain HQ399_19140 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ399_19145 PF04362 Bacterial Fe(2+) trafficking HQ399_19150 PF10576 Iron-sulfur binding domain of endonuclease III HQ399_19150 PF00633 Helix-hairpin-helix motif HQ399_19150 PF14815 NUDIX domain HQ399_19150 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ399_19155 PF01743 Poly A polymerase head domain HQ399_19155 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ399_19155 PF01966 HD domain HQ399_19160 PF02028 BCCT, betaine/carnitine/choline family transporter HQ399_19175 PF04222 Protein of unknown function (DUF416) HQ399_19180 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ399_19185 PF01476 LysM domain HQ399_19185 PF08525 Opacity-associated protein A N-terminal motif HQ399_19185 PF01551 Peptidase family M23 HQ399_19205 PF01297 Zinc-uptake complex component A periplasmic HQ399_19210 PF00005 ABC transporter HQ399_19215 PF00950 ABC 3 transport family HQ399_19220 PF03466 LysR substrate binding domain HQ399_19220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_19225 PF00892 EamA-like transporter family HQ399_19230 PF03167 Uracil DNA glycosylase superfamily HQ399_19235 PF00892 EamA-like transporter family HQ399_19245 PF01541 GIY-YIG catalytic domain HQ399_19260 PF04012 PspA/IM30 family HQ399_19265 PF01553 Acyltransferase HQ399_19285 PF00578 AhpC/TSA family HQ399_19290 PF03466 LysR substrate binding domain HQ399_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_19295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase HQ399_19295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase HQ399_19305 PF00226 DnaJ domain HQ399_19305 PF01556 DnaJ C terminal domain HQ399_19305 PF00684 DnaJ central domain HQ399_19325 PF00854 POT family HQ399_19335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_19335 PF03466 LysR substrate binding domain HQ399_19345 PF02600 Disulfide bond formation protein DsbB HQ399_19360 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ399_19360 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ399_19365 PF03992 Antibiotic biosynthesis monooxygenase HQ399_19370 PF01751 Toprim domain HQ399_19370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_19370 PF00204 DNA gyrase B HQ399_19370 PF00986 DNA gyrase B subunit, carboxyl terminus HQ399_19375 PF04632 Fusaric acid resistance protein family HQ399_19380 PF00529 HlyD membrane-fusion protein of T1SS HQ399_19380 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ399_19385 PF07869 Protein of unknown function (DUF1656) HQ399_19395 PF00293 NUDIX domain HQ399_19400 PF05728 Uncharacterised protein family (UPF0227) HQ399_19405 PF00149 Calcineurin-like phosphoesterase HQ399_19410 PF06853 Protein of unknown function (DUF1249) HQ399_19415 PF00293 NUDIX domain HQ399_19420 PF02321 Outer membrane efflux protein HQ399_19425 PF01467 Cytidylyltransferase-like HQ399_19425 PF00294 pfkB family carbohydrate kinase HQ399_19430 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ399_19435 PF02378 Phosphotransferase system, EIIC HQ399_19435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ399_19435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_19440 PF01232 Mannitol dehydrogenase Rossmann domain HQ399_19440 PF08125 Mannitol dehydrogenase C-terminal domain HQ399_19445 PF05068 Mannitol repressor HQ399_19465 PF01544 CorA-like Mg2+ transporter protein HQ399_19470 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ399_19485 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ399_19490 PF07670 Nucleoside recognition HQ399_19490 PF07662 Na+ dependent nucleoside transporter C-terminus HQ399_19490 PF01773 Na+ dependent nucleoside transporter N-terminus HQ399_19495 PF03880 DbpA RNA binding domain HQ399_19495 PF00270 DEAD/DEAH box helicase HQ399_19495 PF00271 Helicase conserved C-terminal domain HQ399_19515 PF01040 UbiA prenyltransferase family HQ399_19520 PF00425 chorismate binding enzyme HQ399_19525 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ399_19525 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ399_19525 PF16582 Middle domain of thiamine pyrophosphate HQ399_19530 PF12697 Alpha/beta hydrolase family HQ399_19535 PF00378 Enoyl-CoA hydratase/isomerase HQ399_19540 PF13378 Enolase C-terminal domain-like HQ399_19545 PF00501 AMP-binding enzyme HQ399_19550 PF01752 Collagenase HQ399_19550 PF08453 Peptidase family M9 N-terminal HQ399_19555 PF02698 DUF218 domain HQ399_19560 PF00072 Response regulator receiver domain HQ399_19560 PF01584 CheW-like domain HQ399_19570 PF08351 Domain of unknown function (DUF1726) HQ399_19570 PF13718 GNAT acetyltransferase 2 HQ399_19570 PF05127 Helicase HQ399_19570 PF17176 tRNA-binding domain HQ399_19585 PF00210 Ferritin-like domain HQ399_19590 PF02142 MGS-like domain HQ399_19595 PF00465 Iron-containing alcohol dehydrogenase HQ399_19605 PF03577 Peptidase family C69 HQ399_19610 PF00106 short chain dehydrogenase HQ399_19630 PF02308 MgtC family HQ399_19635 PF00128 Alpha amylase, catalytic domain HQ399_19635 PF02903 Alpha amylase, N-terminal ig-like domain HQ399_19635 PF16657 Maltogenic Amylase, C-terminal domain HQ399_19650 PF00884 Sulfatase HQ399_19655 PF01037 Lrp/AsnC ligand binding domain HQ399_19665 PF04204 Homoserine O-succinyltransferase HQ399_19670 PF00013 KH domain HQ399_19670 PF01966 HD domain HQ399_19670 PF12072 Domain of unknown function (DUF3552) HQ399_19675 PF02464 Competence-damaged protein HQ399_19675 PF00994 Probable molybdopterin binding domain HQ399_19695 PF04363 Protein of unknown function (DUF496) HQ399_19725 PF00271 Helicase conserved C-terminal domain HQ399_19725 PF12137 RNA polymerase recycling family C-terminal HQ399_19725 PF00176 SNF2 family N-terminal domain HQ399_19725 PF18339 RapA N-terminal Tudor like domain 1 HQ399_19725 PF18337 RapA N-terminal Tudor like domain HQ399_19730 PF00849 RNA pseudouridylate synthase HQ399_19740 PF14602 Hexapeptide repeat of succinyl-transferase HQ399_19740 PF12464 Maltose acetyltransferase HQ399_19745 PF00128 Alpha amylase, catalytic domain HQ399_19745 PF11941 Domain of unknown function (DUF3459) HQ399_19750 PF00367 phosphotransferase system, EIIB HQ399_19750 PF02378 Phosphotransferase system, EIIC HQ399_19755 PF00356 Bacterial regulatory proteins, lacI family HQ399_19770 PF17763 Glutaminase/Asparaginase C-terminal domain HQ399_19770 PF00710 Asparaginase, N-terminal HQ399_19775 PF03471 Transporter associated domain HQ399_19775 PF01595 Cyclin M transmembrane N-terminal domain HQ399_19775 PF00571 CBS domain HQ399_19780 PF09335 SNARE associated Golgi protein HQ399_19785 PF00768 D-alanyl-D-alanine carboxypeptidase HQ399_19825 PF02599 Global regulator protein family HQ399_19830 PF00696 Amino acid kinase family HQ399_19830 PF01842 ACT domain HQ399_19830 PF13840 ACT domain HQ399_19835 PF02272 DHHA1 domain HQ399_19835 PF01411 tRNA synthetases class II (A) HQ399_19835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ399_19840 PF02631 RecX family HQ399_19845 PF00154 recA bacterial DNA recombination protein HQ399_19850 PF02464 Competence-damaged protein HQ399_19855 PF05190 MutS family domain IV HQ399_19855 PF05192 MutS domain III HQ399_19855 PF05188 MutS domain II HQ399_19855 PF01624 MutS domain I HQ399_19855 PF00488 MutS domain V HQ399_19860 PF01734 Patatin-like phospholipase HQ399_19870 PF04172 LrgB-like family HQ399_19875 PF03788 LrgA family HQ399_19880 PF00155 Aminotransferase class I and II HQ399_19880 PF00392 Bacterial regulatory proteins, gntR family HQ399_19895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_19895 PF03466 LysR substrate binding domain HQ399_19910 PF04073 Aminoacyl-tRNA editing domain HQ399_19925 PF00311 Phosphoenolpyruvate carboxylase HQ399_19930 PF07687 Peptidase dimerisation domain HQ399_19930 PF01546 Peptidase family M20/M25/M40 HQ399_19935 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ399_19935 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ399_19940 PF00696 Amino acid kinase family HQ399_19945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ399_19945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ399_19950 PF00764 Arginosuccinate synthase HQ399_19955 PF00206 Lyase HQ399_19955 PF14698 Argininosuccinate lyase C-terminal HQ399_19970 PF07670 Nucleoside recognition HQ399_19995 PF02660 Glycerol-3-phosphate acyltransferase HQ399_20000 PF02152 Dihydroneopterin aldolase HQ399_20005 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ399_20010 PF07690 Major Facilitator Superfamily HQ399_20015 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ399_20015 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ399_20025 PF12792 CSS motif domain associated with EAL HQ399_20025 PF00563 EAL domain HQ399_20030 PF00330 Aconitase family (aconitate hydratase) HQ399_20030 PF11791 Aconitate B N-terminal domain HQ399_20030 PF06434 Aconitate hydratase 2 N-terminus HQ399_20035 PF01734 Patatin-like phospholipase HQ399_20040 PF00672 HAMP domain HQ399_20040 PF12729 Four helix bundle sensory module for signal transduction HQ399_20040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ399_20045 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ399_20045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ399_20050 PF00364 Biotin-requiring enzyme HQ399_20050 PF02817 e3 binding domain HQ399_20050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ399_20055 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ399_20055 PF00456 Transketolase, thiamine diphosphate binding domain HQ399_20060 PF07729 FCD domain HQ399_20060 PF00392 Bacterial regulatory proteins, gntR family HQ399_20065 PF01510 N-acetylmuramoyl-L-alanine amidase HQ399_20075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ399_20075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ399_20080 PF07963 Prokaryotic N-terminal methylation motif HQ399_20085 PF00437 Type II/IV secretion system protein HQ399_20085 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ399_20090 PF00482 Type II secretion system (T2SS), protein F HQ399_20095 PF06750 Bacterial Peptidase A24 N-terminal domain HQ399_20095 PF01478 Type IV leader peptidase family HQ399_20100 PF01121 Dephospho-CoA kinase HQ399_20105 PF07072 Cell division protein HQ399_20110 PF03884 DNA gyrase inhibitor YacG HQ399_20115 PF00293 NUDIX domain HQ399_20120 PF02810 SEC-C motif HQ399_20120 PF07517 SecA DEAD-like domain HQ399_20120 PF01043 SecA preprotein cross-linking domain HQ399_20120 PF07516 SecA Wing and Scaffold domain HQ399_20130 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ399_20135 PF12327 FtsZ family, C-terminal domain HQ399_20135 PF00091 Tubulin/FtsZ family, GTPase domain HQ399_20140 PF02491 SHS2 domain inserted in FTSA HQ399_20145 PF03799 Cell division protein FtsQ HQ399_20145 PF08478 POTRA domain, FtsQ-type HQ399_20150 PF01225 Mur ligase family, catalytic domain HQ399_20150 PF08245 Mur ligase middle domain HQ399_20150 PF02875 Mur ligase family, glutamate ligase domain HQ399_20155 PF04101 Glycosyltransferase family 28 C-terminal domain HQ399_20155 PF03033 Glycosyltransferase family 28 N-terminal domain HQ399_20160 PF01098 Cell cycle protein HQ399_20165 PF02875 Mur ligase family, glutamate ligase domain HQ399_20165 PF08245 Mur ligase middle domain HQ399_20170 PF00953 Glycosyl transferase family 4 HQ399_20170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ399_20175 PF01225 Mur ligase family, catalytic domain HQ399_20175 PF02875 Mur ligase family, glutamate ligase domain HQ399_20175 PF08245 Mur ligase middle domain HQ399_20180 PF02875 Mur ligase family, glutamate ligase domain HQ399_20180 PF08245 Mur ligase middle domain HQ399_20180 PF01225 Mur ligase family, catalytic domain HQ399_20185 PF00905 Penicillin binding protein transpeptidase domain HQ399_20185 PF03717 Penicillin-binding Protein dimerisation domain HQ399_20190 PF04999 Cell division protein FtsL HQ399_20195 PF01795 MraW methylase family HQ399_20200 PF02381 MraZ protein, putative antitoxin-like HQ399_20210 PF01464 Transglycosylase SLT domain HQ399_20210 PF01476 LysM domain HQ399_20215 PF00691 OmpA family HQ399_20215 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ399_20220 PF01618 MotA/TolQ/ExbB proton channel family HQ399_20225 PF04542 Sigma-70 region 2 HQ399_20225 PF04545 Sigma-70, region 4 HQ399_20245 PF02561 Flagellar protein FliS HQ399_20250 PF07196 Flagellin hook IN motif HQ399_20250 PF07195 Flagellar hook-associated protein 2 C-terminus HQ399_20250 PF02465 Flagellar hook-associated protein 2 N-terminus HQ399_20255 PF00669 Bacterial flagellin N-terminal helical region HQ399_20255 PF00700 Bacterial flagellin C-terminal helical region HQ399_20270 PF00669 Bacterial flagellin N-terminal helical region HQ399_20275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_20275 PF00460 Flagella basal body rod protein HQ399_20285 PF02119 Flagellar P-ring protein HQ399_20290 PF02107 Flagellar L-ring protein HQ399_20295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_20295 PF00460 Flagella basal body rod protein HQ399_20300 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_20300 PF00460 Flagella basal body rod protein HQ399_20305 PF00460 Flagella basal body rod protein HQ399_20305 PF07559 Flagellar basal body protein FlaE HQ399_20305 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_20310 PF13861 FlgD Tudor-like domain HQ399_20310 PF13860 FlgD Ig-like domain HQ399_20310 PF03963 Flagellar hook capping protein - N-terminal region HQ399_20315 PF00460 Flagella basal body rod protein HQ399_20315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ399_20320 PF00460 Flagella basal body rod protein HQ399_20330 PF04316 Anti-sigma-28 factor, FlgM HQ399_20345 PF18269 T3SS EscN ATPase C-terminal domain HQ399_20345 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ399_20355 PF14842 FliG N-terminal domain HQ399_20355 PF14841 FliG middle domain HQ399_20355 PF01706 FliG C-terminal domain HQ399_20360 PF08345 Flagellar M-ring protein C-terminal HQ399_20360 PF01514 Secretory protein of YscJ/FliF family HQ399_20365 PF02049 Flagellar hook-basal body complex protein FliE HQ399_20370 PF00072 Response regulator receiver domain HQ399_20370 PF02954 Bacterial regulatory protein, Fis family HQ399_20370 PF00158 Sigma-54 interaction domain HQ399_20375 PF00771 FHIPEP family HQ399_20380 PF01312 FlhB HrpN YscU SpaS Family HQ399_20385 PF01311 Bacterial export proteins, family 1 HQ399_20390 PF01313 Bacterial export proteins, family 3 HQ399_20395 PF00813 FliP family HQ399_20400 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ399_20415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ399_20420 PF04348 LppC putative lipoprotein HQ399_20425 PF02021 Uncharacterised protein family UPF0102 HQ399_20430 PF13580 SIS domain HQ399_20440 PF04386 Stringent starvation protein B HQ399_20445 PF02798 Glutathione S-transferase, N-terminal domain HQ399_20445 PF00043 Glutathione S-transferase, C-terminal domain HQ399_20450 PF02167 Cytochrome C1 family HQ399_20455 PF00033 Cytochrome b/b6/petB HQ399_20455 PF00032 Cytochrome b(C-terminal)/b6/petD HQ399_20460 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ399_20460 PF00355 Rieske [2Fe-2S] domain HQ399_20465 PF00380 Ribosomal protein S9/S16 HQ399_20470 PF00572 Ribosomal protein L13 HQ399_20475 PF03969 AFG1-like ATPase HQ399_20485 PF00595 PDZ domain HQ399_20485 PF13180 PDZ domain HQ399_20490 PF13180 PDZ domain HQ399_20520 PF01979 Amidohydrolase family HQ399_20525 PF03841 L-seryl-tRNA selenium transferase HQ399_20530 PF07071 KDGP aldolase HQ399_20535 PF00874 PRD domain HQ399_20535 PF05043 Mga helix-turn-helix domain HQ399_20535 PF08279 HTH domain HQ399_20535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_20540 PF00381 PTS HPr component phosphorylation site HQ399_20545 PF03668 P-loop ATPase protein family HQ399_20550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ399_20555 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ399_20560 PF04552 Sigma-54, DNA binding domain HQ399_20560 PF04963 Sigma-54 factor, core binding domain HQ399_20560 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ399_20565 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ399_20565 PF00005 ABC transporter HQ399_20570 PF03968 OstA-like protein HQ399_20585 PF01380 SIS domain HQ399_20585 PF00571 CBS domain HQ399_20590 PF00005 ABC transporter HQ399_20595 PF02405 Permease MlaE HQ399_20600 PF02470 MlaD protein HQ399_20605 PF05494 MlaC protein HQ399_20615 PF01722 BolA-like protein HQ399_20620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ399_20625 PF01523 Putative modulator of DNA gyrase HQ399_20630 PF04751 Protein of unknown function (DUF615) HQ399_20640 PF07722 Peptidase C26 HQ399_20650 PF07885 Ion channel HQ399_20650 PF00027 Cyclic nucleotide-binding domain HQ399_20655 PF13419 Haloacid dehalogenase-like hydrolase HQ399_20660 PF02899 Phage integrase, N-terminal SAM-like domain HQ399_20660 PF00589 Phage integrase family HQ399_20670 PF01678 Diaminopimelate epimerase HQ399_20675 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ399_20675 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ399_20685 PF01491 Frataxin-like domain HQ399_20690 PF02230 Phospholipase/Carboxylesterase HQ399_20695 PF01295 Adenylate cyclase, class-I HQ399_20695 PF12633 Adenylate cyclase NT domain HQ399_20700 PF03900 Porphobilinogen deaminase, C-terminal domain HQ399_20700 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ399_20705 PF02602 Uroporphyrinogen-III synthase HemD HQ399_20710 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ399_20720 PF03692 Putative zinc- or iron-chelating domain HQ399_20725 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ399_20745 PF13520 Amino acid permease HQ399_20750 PF00768 D-alanyl-D-alanine carboxypeptidase HQ399_20760 PF07715 TonB-dependent Receptor Plug Domain HQ399_20760 PF00593 TonB dependent receptor HQ399_20780 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ399_20785 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ399_20790 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ399_20790 PF00883 Cytosol aminopeptidase family, catalytic domain HQ399_20795 PF04364 DNA polymerase III chi subunit, HolC HQ399_20800 PF10458 Valyl tRNA synthetase tRNA binding arm HQ399_20800 PF00133 tRNA synthetases class I (I, L, M and V) HQ399_20800 PF08264 Anticodon-binding domain of tRNA HQ399_20820 PF00583 Acetyltransferase (GNAT) family HQ399_20825 PF04229 GrpB protein HQ399_20825 PF13673 Acetyltransferase (GNAT) domain HQ399_20845 PF00196 Bacterial regulatory proteins, luxR family HQ399_20850 PF00579 tRNA synthetases class I (W and Y) HQ399_20850 PF01479 S4 domain HQ399_20855 PF00561 alpha/beta hydrolase fold HQ399_20860 PF03280 Proteobacterial lipase chaperone protein HQ399_20875 PF12793 Sugar transport-related sRNA regulator N-term HQ399_20875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ399_20885 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ399_20905 PF00990 Diguanylate cyclase, GGDEF domain HQ399_20915 PF08402 TOBE domain HQ399_20915 PF00005 ABC transporter HQ399_20925 PF00528 Binding-protein-dependent transport system inner membrane component HQ399_20940 PF07702 UTRA domain HQ399_20940 PF00392 Bacterial regulatory proteins, gntR family HQ399_20950 PF03606 C4-dicarboxylate anaerobic carrier HQ399_20965 PF00990 Diguanylate cyclase, GGDEF domain HQ399_20980 PF13538 UvrD-like helicase C-terminal domain HQ399_20985 PF12705 PD-(D/E)XK nuclease superfamily HQ399_20985 PF00580 UvrD/REP helicase N-terminal domain HQ399_20985 PF13361 UvrD-like helicase C-terminal domain HQ399_20995 PF07681 DoxX HQ399_21000 PF02678 Pirin HQ399_21000 PF17954 Quercetinase C-terminal cupin domain HQ399_21010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ399_21010 PF03466 LysR substrate binding domain HQ399_21020 PF00486 Transcriptional regulatory protein, C terminal HQ399_21020 PF00072 Response regulator receiver domain HQ399_21025 PF00512 His Kinase A (phospho-acceptor) domain HQ399_21025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ399_21025 PF00672 HAMP domain HQ399_21030 PF00990 Diguanylate cyclase, GGDEF domain HQ399_21030 PF17158 Membrane-associated sensor, integral membrane domain HQ399_21035 PF00593 TonB dependent receptor HQ399_21035 PF07715 TonB-dependent Receptor Plug Domain HQ399_21070 PF01196 Ribosomal protein L17 HQ399_21075 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ399_21075 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ399_21075 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ399_21080 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ399_21080 PF01479 S4 domain HQ399_21085 PF00411 Ribosomal protein S11 HQ399_21090 PF00416 Ribosomal protein S13/S18 HQ399_21095 PF00444 Ribosomal protein L36 HQ399_21100 PF00344 SecY translocase HQ399_21105 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ399_21110 PF00327 Ribosomal protein L30p/L7e HQ399_21115 PF00333 Ribosomal protein S5, N-terminal domain HQ399_21115 PF03719 Ribosomal protein S5, C-terminal domain HQ399_21120 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ399_21125 PF00347 Ribosomal protein L6 HQ399_21130 PF00410 Ribosomal protein S8