locus-tag class description HQ400_00005 PF03006 Haemolysin-III related HQ400_00010 PF06826 Predicted Permease Membrane Region HQ400_00010 PF02080 TrkA-C domain HQ400_00050 PF00563 EAL domain HQ400_00050 PF00990 Diguanylate cyclase, GGDEF domain HQ400_00050 PF03707 Bacterial signalling protein N terminal repeat HQ400_00055 PF06877 Regulator of ribonuclease activity B HQ400_00075 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ400_00075 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ400_00090 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ400_00090 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ400_00125 PF07977 FabA-like domain HQ400_00130 PF13193 AMP-binding enzyme C-terminal domain HQ400_00130 PF00501 AMP-binding enzyme HQ400_00140 PF00550 Phosphopantetheine attachment site HQ400_00145 PF00550 Phosphopantetheine attachment site HQ400_00175 PF04227 Indigoidine synthase A like protein HQ400_00180 PF00294 pfkB family carbohydrate kinase HQ400_00195 PF01609 Transposase DDE domain HQ400_00205 PF00582 Universal stress protein family HQ400_00215 PF00267 Gram-negative porin HQ400_00220 PF08241 Methyltransferase domain HQ400_00225 PF00027 Cyclic nucleotide-binding domain HQ400_00225 PF13545 Crp-like helix-turn-helix domain HQ400_00230 PF02566 OsmC-like protein HQ400_00245 PF00485 Phosphoribulokinase / Uridine kinase family HQ400_00250 PF06794 Uncharacterised protein family (UPF0270) HQ400_00255 PF00563 EAL domain HQ400_00255 PF01590 GAF domain HQ400_00255 PF00990 Diguanylate cyclase, GGDEF domain HQ400_00255 PF00360 Phytochrome region HQ400_00260 PF00561 alpha/beta hydrolase fold HQ400_00265 PF01584 CheW-like domain HQ400_00265 PF00072 Response regulator receiver domain HQ400_00275 PF09526 Probable metal-binding protein (DUF2387) HQ400_00280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_00285 PF04102 SlyX HQ400_00295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_00295 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ400_00300 PF00072 Response regulator receiver domain HQ400_00300 PF02954 Bacterial regulatory protein, Fis family HQ400_00300 PF00158 Sigma-54 interaction domain HQ400_00320 PF00149 Calcineurin-like phosphoesterase HQ400_00320 PF02872 5'-nucleotidase, C-terminal domain HQ400_00330 PF03796 DnaB-like helicase C terminal domain HQ400_00330 PF00772 DnaB-like helicase N terminal domain HQ400_00335 PF00842 Alanine racemase, C-terminal domain HQ400_00335 PF01168 Alanine racemase, N-terminal domain HQ400_00340 PF01894 Uncharacterised protein family UPF0047 HQ400_00345 PF03575 Peptidase family S51 HQ400_00355 PF00072 Response regulator receiver domain HQ400_00355 PF04397 LytTr DNA-binding domain HQ400_00370 PF00005 ABC transporter HQ400_00375 PF01032 FecCD transport family HQ400_00385 PF06228 Haem utilisation ChuX/HutX HQ400_00390 PF01243 Pyridoxamine 5'-phosphate oxidase HQ400_00410 PF07715 TonB-dependent Receptor Plug Domain HQ400_00410 PF00593 TonB dependent receptor HQ400_00415 PF12832 MFS_1 like family HQ400_00425 PF13443 Cro/C1-type HTH DNA-binding domain HQ400_00440 PF00704 Glycosyl hydrolases family 18 HQ400_00440 PF08329 Chitinase A, N-terminal domain HQ400_00445 PF12561 ToxR activated gene A lipoprotein domain HQ400_00445 PF17945 Beta/Gamma crystallin HQ400_00450 PF18416 N-acetylglucosamine binding protein domain 2 HQ400_00450 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ400_00485 PF06483 Chitinase C HQ400_00485 PF00704 Glycosyl hydrolases family 18 HQ400_00490 PF00072 Response regulator receiver domain HQ400_00490 PF01584 CheW-like domain HQ400_00495 PF13472 GDSL-like Lipase/Acylhydrolase family HQ400_00500 PF00005 ABC transporter HQ400_00510 PF08338 Domain of unknown function (DUF1731) HQ400_00510 PF01370 NAD dependent epimerase/dehydratase family HQ400_00515 PF12792 CSS motif domain associated with EAL HQ400_00515 PF00563 EAL domain HQ400_00520 PF00155 Aminotransferase class I and II HQ400_00525 PF02390 Putative methyltransferase HQ400_00530 PF04320 Protein with unknown function (DUF469) HQ400_00535 PF04960 Glutaminase HQ400_00540 PF00581 Rhodanese-like domain HQ400_00545 PF06004 Bacterial protein of unknown function (DUF903) HQ400_00555 PF00994 Probable molybdopterin binding domain HQ400_00560 PF01609 Transposase DDE domain HQ400_00570 PF06738 Putative threonine/serine exporter HQ400_00575 PF12821 Threonine/Serine exporter, ThrE HQ400_00580 PF00186 Dihydrofolate reductase HQ400_00585 PF01507 Phosphoadenosine phosphosulfate reductase family HQ400_00590 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ400_00590 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ400_00595 PF00667 FAD binding domain HQ400_00595 PF00258 Flavodoxin HQ400_00595 PF00175 Oxidoreductase NAD-binding domain HQ400_00600 PF00152 tRNA synthetases class II (D, K and N) HQ400_00600 PF01336 OB-fold nucleic acid binding domain HQ400_00610 PF02743 Cache domain HQ400_00610 PF00672 HAMP domain HQ400_00610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_00615 PF03616 Sodium/glutamate symporter HQ400_00620 PF17763 Glutaminase/Asparaginase C-terminal domain HQ400_00620 PF00710 Asparaginase, N-terminal HQ400_00625 PF07023 Protein of unknown function (DUF1315) HQ400_00630 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ400_00630 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ400_00650 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family HQ400_00650 PF04055 Radical SAM superfamily HQ400_00655 PF03099 Biotin/lipoate A/B protein ligase family HQ400_00660 PF04359 Protein of unknown function (DUF493) HQ400_00665 PF07943 Penicillin-binding protein 5, C-terminal domain HQ400_00665 PF00768 D-alanyl-D-alanine carboxypeptidase HQ400_00670 PF03330 Lytic transglycolase HQ400_00670 PF05036 Sporulation related domain HQ400_00675 PF13406 Transglycosylase SLT domain HQ400_00680 PF01098 Cell cycle protein HQ400_00685 PF00905 Penicillin binding protein transpeptidase domain HQ400_00685 PF03717 Penicillin-binding Protein dimerisation domain HQ400_00690 PF02590 Predicted SPOUT methyltransferase HQ400_00700 PF01467 Cytidylyltransferase-like HQ400_00720 PF07295 Zinc-ribbon containing domain HQ400_00730 PF01523 Putative modulator of DNA gyrase HQ400_00735 PF01523 Putative modulator of DNA gyrase HQ400_00740 PF00258 Flavodoxin HQ400_00745 PF02899 Phage integrase, N-terminal SAM-like domain HQ400_00745 PF00589 Phage integrase family HQ400_00750 PF01741 Large-conductance mechanosensitive channel, MscL HQ400_00760 PF17768 RecJ OB domain HQ400_00760 PF02272 DHHA1 domain HQ400_00760 PF01368 DHH family HQ400_00765 PF00795 Carbon-nitrogen hydrolase HQ400_00770 PF00571 CBS domain HQ400_00770 PF03471 Transporter associated domain HQ400_00775 PF02130 Uncharacterized protein family UPF0054 HQ400_00780 PF02562 PhoH-like protein HQ400_00785 PF04055 Radical SAM superfamily HQ400_00785 PF01938 TRAM domain HQ400_00785 PF00919 Uncharacterized protein family UPF0004 HQ400_00790 PF01494 FAD binding domain HQ400_00795 PF00857 Isochorismatase family HQ400_00800 PF00313 'Cold-shock' DNA-binding domain HQ400_00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_00810 PF03466 LysR substrate binding domain HQ400_00820 PF13419 Haloacid dehalogenase-like hydrolase HQ400_00830 PF03606 C4-dicarboxylate anaerobic carrier HQ400_00835 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ400_00840 PF13382 Adenine deaminase C-terminal domain HQ400_00840 PF01979 Amidohydrolase family HQ400_00845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_00845 PF03466 LysR substrate binding domain HQ400_00865 PF08207 Elongation factor P (EF-P) KOW-like domain HQ400_00865 PF09285 Elongation factor P, C-terminal HQ400_00865 PF01132 Elongation factor P (EF-P) OB domain HQ400_00875 PF00478 IMP dehydrogenase / GMP reductase domain HQ400_00885 PF08521 Two-component sensor kinase N-terminal HQ400_00885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_00885 PF00512 His Kinase A (phospho-acceptor) domain HQ400_00890 PF00072 Response regulator receiver domain HQ400_00890 PF00486 Transcriptional regulatory protein, C terminal HQ400_00910 PF00501 AMP-binding enzyme HQ400_00910 PF13193 AMP-binding enzyme C-terminal domain HQ400_00925 PF01266 FAD dependent oxidoreductase HQ400_00935 PF00440 Bacterial regulatory proteins, tetR family HQ400_00935 PF17932 Tetracyclin repressor-like, C-terminal domain HQ400_00950 PF07687 Peptidase dimerisation domain HQ400_00950 PF01546 Peptidase family M20/M25/M40 HQ400_00955 PF07670 Nucleoside recognition HQ400_00960 PF07670 Nucleoside recognition HQ400_00965 PF02313 Fumarate reductase subunit D HQ400_00970 PF02300 Fumarate reductase subunit C HQ400_00975 PF13183 4Fe-4S dicluster domain HQ400_00975 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ400_00980 PF00890 FAD binding domain HQ400_00980 PF02910 Fumarate reductase flavoprotein C-term HQ400_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_00985 PF00672 HAMP domain HQ400_00985 PF02743 Cache domain HQ400_01005 PF01551 Peptidase family M23 HQ400_01005 PF01476 LysM domain HQ400_01005 PF08525 Opacity-associated protein A N-terminal motif HQ400_01015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_01015 PF03466 LysR substrate binding domain HQ400_01030 PF00672 HAMP domain HQ400_01030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_01030 PF02743 Cache domain HQ400_01040 PF17092 Penicillin-binding protein OB-like domain HQ400_01040 PF00905 Penicillin binding protein transpeptidase domain HQ400_01040 PF00912 Transglycosylase HQ400_01045 PF11104 Type IV pilus assembly protein PilM; HQ400_01055 PF04350 Pilus assembly protein, PilO HQ400_01070 PF01202 Shikimate kinase HQ400_01075 PF01761 3-dehydroquinate synthase HQ400_01085 PF02086 D12 class N6 adenine-specific DNA methyltransferase HQ400_01090 PF00834 Ribulose-phosphate 3 epimerase family HQ400_01095 PF13419 Haloacid dehalogenase-like hydrolase HQ400_01100 PF00579 tRNA synthetases class I (W and Y) HQ400_01110 PF00117 Glutamine amidotransferase class-I HQ400_01115 PF00202 Aminotransferase class-III HQ400_01120 PF04958 Arginine N-succinyltransferase beta subunit HQ400_01125 PF00171 Aldehyde dehydrogenase family HQ400_01140 PF13419 Haloacid dehalogenase-like hydrolase HQ400_01145 PF07690 Major Facilitator Superfamily HQ400_01155 PF00128 Alpha amylase, catalytic domain HQ400_01155 PF16657 Maltogenic Amylase, C-terminal domain HQ400_01165 PF04266 ASCH domain HQ400_01175 PF01048 Phosphorylase superfamily HQ400_01180 PF04973 Nicotinamide mononucleotide transporter HQ400_01185 PF02080 TrkA-C domain HQ400_01185 PF03600 Citrate transporter HQ400_01230 PF03466 LysR substrate binding domain HQ400_01230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_01245 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_01250 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_01290 PF01609 Transposase DDE domain HQ400_01295 PF02661 Fic/DOC family HQ400_01295 PF13784 Fic/DOC family N-terminal HQ400_01300 PF13438 Domain of unknown function (DUF4113) HQ400_01300 PF11798 IMS family HHH motif HQ400_01300 PF00817 impB/mucB/samB family HQ400_01300 PF11799 impB/mucB/samB family C-terminal domain HQ400_01305 PF00717 Peptidase S24-like HQ400_01335 PF02463 RecF/RecN/SMC N terminal domain HQ400_01355 PF13099 Domain of unknown function (DUF3944) HQ400_01355 PF03981 Ubiquinol-cytochrome C chaperone HQ400_01370 PF04002 RadC-like JAB domain HQ400_01415 PF09588 YqaJ-like viral recombinase domain HQ400_01425 PF01926 50S ribosome-binding GTPase HQ400_01425 PF06071 Protein of unknown function (DUF933) HQ400_01430 PF01195 Peptidyl-tRNA hydrolase HQ400_01435 PF00149 Calcineurin-like phosphoesterase HQ400_01435 PF02872 5'-nucleotidase, C-terminal domain HQ400_01440 PF14572 Phosphoribosyl synthetase-associated domain HQ400_01440 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase HQ400_01450 PF08544 GHMP kinases C terminal HQ400_01450 PF00288 GHMP kinases N terminal domain HQ400_01455 PF03550 Outer membrane lipoprotein LolB HQ400_01460 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain HQ400_01460 PF01488 Shikimate / quinate 5-dehydrogenase HQ400_01460 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain HQ400_01465 PF03462 PCRF domain HQ400_01465 PF00472 RF-1 domain HQ400_01470 PF17827 PrmC N-terminal domain HQ400_01470 PF13847 Methyltransferase domain HQ400_01480 PF13369 Transglutaminase-like superfamily HQ400_01485 PF00793 DAHP synthetase I family HQ400_01490 PF00375 Sodium:dicarboxylate symporter family HQ400_01495 PF01228 Glycine radical HQ400_01505 PF03167 Uracil DNA glycosylase superfamily HQ400_01515 PF01204 Trehalase HQ400_01525 PF01161 Phosphatidylethanolamine-binding protein HQ400_01530 PF00709 Adenylosuccinate synthetase HQ400_01545 PF00155 Aminotransferase class I and II HQ400_01550 PF07690 Major Facilitator Superfamily HQ400_01560 PF00106 short chain dehydrogenase HQ400_01565 PF08496 Peptidase family S49 N-terminal HQ400_01565 PF01343 Peptidase family S49 HQ400_01570 PF07690 Major Facilitator Superfamily HQ400_01575 PF00990 Diguanylate cyclase, GGDEF domain HQ400_01580 PF02635 DsrE/DsrF-like family HQ400_01590 PF12838 4Fe-4S dicluster domain HQ400_01595 PF01136 Peptidase family U32 HQ400_01595 PF16325 Peptidase family U32 C-terminal domain HQ400_01600 PF00563 EAL domain HQ400_01600 PF01590 GAF domain HQ400_01600 PF00990 Diguanylate cyclase, GGDEF domain HQ400_01600 PF00989 PAS fold HQ400_01630 PF00196 Bacterial regulatory proteins, luxR family HQ400_01630 PF00072 Response regulator receiver domain HQ400_01635 PF00512 His Kinase A (phospho-acceptor) domain HQ400_01635 PF00672 HAMP domain HQ400_01635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_01635 PF01627 Hpt domain HQ400_01635 PF00072 Response regulator receiver domain HQ400_01635 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ400_01665 PF08272 Topoisomerase I zinc-ribbon-like HQ400_01665 PF01131 DNA topoisomerase HQ400_01665 PF01751 Toprim domain HQ400_01665 PF01396 Topoisomerase DNA binding C4 zinc finger HQ400_01695 PF00005 ABC transporter HQ400_01695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_01700 PF00005 ABC transporter HQ400_01700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_01715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_01720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_01720 PF09308 LuxQ, periplasmic HQ400_01720 PF00512 His Kinase A (phospho-acceptor) domain HQ400_01720 PF00072 Response regulator receiver domain HQ400_01740 PF10725 Protein of unknown function (DUF2517) HQ400_01750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_01750 PF08447 PAS fold HQ400_01750 PF13426 PAS domain HQ400_01770 PF03454 MoeA C-terminal region (domain IV) HQ400_01770 PF03453 MoeA N-terminal region (domain I and II) HQ400_01770 PF00994 Probable molybdopterin binding domain HQ400_01785 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_01790 PF12849 PBP superfamily domain HQ400_01795 PF02954 Bacterial regulatory protein, Fis family HQ400_01795 PF00072 Response regulator receiver domain HQ400_01795 PF00158 Sigma-54 interaction domain HQ400_01800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_01800 PF00989 PAS fold HQ400_01800 PF00512 His Kinase A (phospho-acceptor) domain HQ400_01810 PF02634 FdhD/NarQ family HQ400_01850 PF00384 Molybdopterin oxidoreductase HQ400_01850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ400_01850 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ400_01850 PF01568 Molydopterin dinucleotide binding domain HQ400_01850 PF00384 Molybdopterin oxidoreductase HQ400_01850 PF12838 4Fe-4S dicluster domain HQ400_01850 PF12838 4Fe-4S dicluster domain HQ400_01850 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ400_01850 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ400_01850 PF01568 Molydopterin dinucleotide binding domain HQ400_01855 PF13247 4Fe-4S dicluster domain HQ400_01865 PF00072 Response regulator receiver domain HQ400_01865 PF00486 Transcriptional regulatory protein, C terminal HQ400_01875 PF05433 Glycine zipper 2TM domain HQ400_01875 PF16998 17 kDa outer membrane surface antigen HQ400_01885 PF00860 Permease family HQ400_01890 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_01895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_01895 PF00672 HAMP domain HQ400_01920 PF02685 Glucokinase HQ400_01925 PF01418 Helix-turn-helix domain, rpiR family HQ400_01925 PF01380 SIS domain HQ400_01930 PF00224 Pyruvate kinase, barrel domain HQ400_01930 PF02887 Pyruvate kinase, alpha/beta domain HQ400_01940 PF02049 Flagellar hook-basal body complex protein FliE HQ400_01945 PF08345 Flagellar M-ring protein C-terminal HQ400_01945 PF01514 Secretory protein of YscJ/FliF family HQ400_01950 PF01706 FliG C-terminal domain HQ400_01950 PF14841 FliG middle domain HQ400_01950 PF14842 FliG N-terminal domain HQ400_01960 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_01960 PF18269 T3SS EscN ATPase C-terminal domain HQ400_01980 PF02154 Flagellar motor switch protein FliM HQ400_01980 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ400_01985 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ400_01990 PF04347 Flagellar biosynthesis protein, FliO HQ400_01995 PF00813 FliP family HQ400_02000 PF01313 Bacterial export proteins, family 3 HQ400_02005 PF01311 Bacterial export proteins, family 1 HQ400_02010 PF01312 FlhB HrpN YscU SpaS Family HQ400_02015 PF00771 FHIPEP family HQ400_02020 PF00448 SRP54-type protein, GTPase domain HQ400_02030 PF04545 Sigma-70, region 4 HQ400_02030 PF04542 Sigma-70 region 2 HQ400_02030 PF04539 Sigma-70 region 3 HQ400_02035 PF00072 Response regulator receiver domain HQ400_02040 PF04344 Chemotaxis phosphatase, CheZ HQ400_02045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_02045 PF00072 Response regulator receiver domain HQ400_02045 PF01627 Hpt domain HQ400_02045 PF02895 Signal transducing histidine kinase, homodimeric domain HQ400_02045 PF01584 CheW-like domain HQ400_02050 PF01339 CheB methylesterase HQ400_02050 PF00072 Response regulator receiver domain HQ400_02055 PF01618 MotA/TolQ/ExbB proton channel family HQ400_02060 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ400_02060 PF00691 OmpA family HQ400_02065 PF13614 AAA domain HQ400_02075 PF01584 CheW-like domain HQ400_02085 PF00005 ABC transporter HQ400_02095 PF01578 Cytochrome C assembly protein HQ400_02100 PF04995 Heme exporter protein D (CcmD) HQ400_02105 PF03100 CcmE HQ400_02115 PF08534 Redoxin HQ400_02120 PF03918 Cytochrome C biogenesis protein HQ400_02125 PF03918 Cytochrome C biogenesis protein HQ400_02130 PF04333 MlaA lipoprotein HQ400_02135 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain HQ400_02135 PF02777 Iron/manganese superoxide dismutases, C-terminal domain HQ400_02140 PF00462 Glutaredoxin HQ400_02150 PF03222 Tryptophan/tyrosine permease family HQ400_02155 PF00871 Acetokinase family HQ400_02160 PF02901 Pyruvate formate lyase-like HQ400_02160 PF01228 Glycine radical HQ400_02165 PF01042 Endoribonuclease L-PSP HQ400_02170 PF01029 NusB family HQ400_02170 PF01189 16S rRNA methyltransferase RsmB/F HQ400_02200 PF01243 Pyridoxamine 5'-phosphate oxidase HQ400_02200 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region HQ400_02205 PF13417 Glutathione S-transferase, N-terminal domain HQ400_02205 PF00043 Glutathione S-transferase, C-terminal domain HQ400_02225 PF00294 pfkB family carbohydrate kinase HQ400_02245 PF08007 Cupin superfamily protein HQ400_02250 PF00206 Lyase HQ400_02250 PF08328 Adenylosuccinate lyase C-terminal HQ400_02255 PF04356 Protein of unknown function (DUF489) HQ400_02265 PF00293 NUDIX domain HQ400_02280 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ400_02285 PF07690 Major Facilitator Superfamily HQ400_02290 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ400_02290 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_02290 PF02378 Phosphotransferase system, EIIC HQ400_02320 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ400_02320 PF00356 Bacterial regulatory proteins, lacI family HQ400_02330 PF00155 Aminotransferase class I and II HQ400_02345 PF01312 FlhB HrpN YscU SpaS Family HQ400_02355 PF01313 Bacterial export proteins, family 3 HQ400_02370 PF02120 Flagellar hook-length control protein FliK HQ400_02385 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ400_02385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_02385 PF18269 T3SS EscN ATPase C-terminal domain HQ400_02395 PF09059 TyeA HQ400_02420 PF09621 Type III secretion system regulator (LcrR) HQ400_02425 PF07216 LcrG protein HQ400_02430 PF04792 V antigen (LcrV) protein HQ400_02435 PF07720 Tetratricopeptide repeat HQ400_02440 PF04888 Secretion system effector C (SseC) like family HQ400_02445 PF05844 YopD protein HQ400_02450 PF05932 Tir chaperone protein (CesT) family HQ400_02465 PF01609 Transposase DDE domain HQ400_02470 PF12833 Helix-turn-helix domain HQ400_02475 PF01609 Transposase DDE domain HQ400_02480 PF16806 Antiactivator protein ExsD HQ400_02485 PF05932 Tir chaperone protein (CesT) family HQ400_02495 PF16693 Inner membrane component of T3SS, periplasmic domain HQ400_02495 PF16697 Inner membrane component of T3SS, cytoplasmic domain HQ400_02500 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF HQ400_02505 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) HQ400_02510 PF09025 YopR, type III needle-polymerisation regulator HQ400_02515 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI HQ400_02520 PF01514 Secretory protein of YscJ/FliF family HQ400_02525 PF06578 YOP proteins translocation protein K (YscK) HQ400_02530 PF02108 Flagellar assembly protein FliH HQ400_02545 PF02075 Crossover junction endodeoxyribonuclease RuvC HQ400_02550 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ400_02550 PF09317 Domain of unknown function (DUF1974) HQ400_02550 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ400_02550 PF02770 Acyl-CoA dehydrogenase, middle domain HQ400_02570 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ400_02570 PF01568 Molydopterin dinucleotide binding domain HQ400_02570 PF00384 Molybdopterin oxidoreductase HQ400_02570 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ400_02570 PF12838 4Fe-4S dicluster domain HQ400_02575 PF00480 ROK family HQ400_02585 PF00083 Sugar (and other) transporter HQ400_02600 PF01668 SmpB protein HQ400_02605 PF03364 Polyketide cyclase / dehydrase and lipid transport HQ400_02610 PF03658 RnfH family Ubiquitin HQ400_02615 PF01546 Peptidase family M20/M25/M40 HQ400_02615 PF07687 Peptidase dimerisation domain HQ400_02620 PF09317 Domain of unknown function (DUF1974) HQ400_02620 PF02771 Acyl-CoA dehydrogenase, N-terminal domain HQ400_02620 PF02770 Acyl-CoA dehydrogenase, middle domain HQ400_02620 PF00441 Acyl-CoA dehydrogenase, C-terminal domain HQ400_02625 PF13580 SIS domain HQ400_02630 PF13230 Glutamine amidotransferases class-II HQ400_02640 PF01933 Uncharacterised protein family UPF0052 HQ400_02650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_02650 PF01627 Hpt domain HQ400_02650 PF00072 Response regulator receiver domain HQ400_02650 PF00672 HAMP domain HQ400_02650 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ400_02650 PF00512 His Kinase A (phospho-acceptor) domain HQ400_02660 PF00072 Response regulator receiver domain HQ400_02660 PF00196 Bacterial regulatory proteins, luxR family HQ400_02665 PF00672 HAMP domain HQ400_02665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_02665 PF07730 Histidine kinase HQ400_02665 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term HQ400_02670 PF06463 Molybdenum Cofactor Synthesis C HQ400_02670 PF04055 Radical SAM superfamily HQ400_02675 PF13187 4Fe-4S dicluster domain HQ400_02675 PF00037 4Fe-4S binding domain HQ400_02675 PF12800 4Fe-4S binding domain HQ400_02690 PF12838 4Fe-4S dicluster domain HQ400_02690 PF12800 4Fe-4S binding domain HQ400_02705 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ400_02710 PF00994 Probable molybdopterin binding domain HQ400_02720 PF02597 ThiS family HQ400_02725 PF02391 MoaE protein HQ400_02735 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_02745 PF00561 alpha/beta hydrolase fold HQ400_02750 PF06406 StbA protein HQ400_02760 PF00899 ThiF family HQ400_02770 PF01227 GTP cyclohydrolase I HQ400_02775 PF17200 Single Cache domain 2 HQ400_02775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_02775 PF00672 HAMP domain HQ400_02795 PF01609 Transposase DDE domain HQ400_02835 PF01609 Transposase DDE domain HQ400_02845 PF01609 Transposase DDE domain HQ400_02850 PF00149 Calcineurin-like phosphoesterase HQ400_02855 PF01609 Transposase DDE domain HQ400_02860 PF01268 Formate--tetrahydrofolate ligase HQ400_02875 PF04264 YceI-like domain HQ400_02900 PF07687 Peptidase dimerisation domain HQ400_02900 PF01546 Peptidase family M20/M25/M40 HQ400_02905 PF17810 Arginine decarboxylase helical bundle domain HQ400_02905 PF17944 Arginine decarboxylase C-terminal helical extension HQ400_02905 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ400_02920 PF12729 Four helix bundle sensory module for signal transduction HQ400_02920 PF00672 HAMP domain HQ400_02920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_02930 PF01042 Endoribonuclease L-PSP HQ400_02940 PF08348 YheO-like PAS domain HQ400_02940 PF13309 HTH domain HQ400_02945 PF00300 Histidine phosphatase superfamily (branch 1) HQ400_02960 PF13407 Periplasmic binding protein domain HQ400_02965 PF07055 Enoyl reductase FAD binding domain HQ400_02965 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ400_02965 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ400_02970 PF03606 C4-dicarboxylate anaerobic carrier HQ400_02975 PF00155 Aminotransferase class I and II HQ400_02985 PF00230 Major intrinsic protein HQ400_03005 PF13091 PLD-like domain HQ400_03005 PF13396 Phospholipase_D-nuclease N-terminal HQ400_03015 PF00551 Formyl transferase HQ400_03015 PF01842 ACT domain HQ400_03020 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase HQ400_03030 PF00085 Thioredoxin HQ400_03035 PF01648 4'-phosphopantetheinyl transferase superfamily HQ400_03040 PF00877 NlpC/P60 family HQ400_03045 PF05971 RNA methyltransferase HQ400_03050 PF01575 MaoC like domain HQ400_03055 PF00939 Sodium:sulfate symporter transmembrane region HQ400_03065 PF17969 L,D-transpeptidase C-terminal domain HQ400_03065 PF01476 LysM domain HQ400_03065 PF03734 L,D-transpeptidase catalytic domain HQ400_03075 PF00271 Helicase conserved C-terminal domain HQ400_03075 PF00176 SNF2 family N-terminal domain HQ400_03075 PF04434 SWIM zinc finger HQ400_03110 PF00075 RNase H HQ400_03115 PF00929 Exonuclease HQ400_03130 PF11849 Domain of unknown function (DUF3369) HQ400_03135 PF08021 Siderophore-interacting FAD-binding domain HQ400_03135 PF04954 Siderophore-interacting protein HQ400_03140 PF01032 FecCD transport family HQ400_03145 PF01032 FecCD transport family HQ400_03150 PF00005 ABC transporter HQ400_03155 PF01497 Periplasmic binding protein HQ400_03180 PF00873 AcrB/AcrD/AcrF family HQ400_03185 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_03190 PF03372 Endonuclease/Exonuclease/phosphatase family HQ400_03205 PF02424 ApbE family HQ400_03210 PF00127 Copper binding proteins, plastocyanin/azurin family HQ400_03220 PF04337 Protein of unknown function, DUF480 HQ400_03225 PF04325 Protein of unknown function (DUF465) HQ400_03255 PF00465 Iron-containing alcohol dehydrogenase HQ400_03265 PF08359 YsiA-like protein, C-terminal region HQ400_03265 PF00440 Bacterial regulatory proteins, tetR family HQ400_03270 PF00171 Aldehyde dehydrogenase family HQ400_03290 PF00034 Cytochrome c HQ400_03290 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ400_03300 PF06481 COX Aromatic Rich Motif HQ400_03300 PF00116 Cytochrome C oxidase subunit II, periplasmic domain HQ400_03305 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ400_03310 PF00510 Cytochrome c oxidase subunit III HQ400_03315 PF03626 Prokaryotic Cytochrome C oxidase subunit IV HQ400_03320 PF01040 UbiA prenyltransferase family HQ400_03325 PF07690 Major Facilitator Superfamily HQ400_03330 PF05656 Protein of unknown function (DUF805) HQ400_03360 PF01238 Phosphomannose isomerase type I HQ400_03370 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ400_03375 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_03380 PF02447 GntP family permease HQ400_03385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_03385 PF03466 LysR substrate binding domain HQ400_03395 PF00877 NlpC/P60 family HQ400_03400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_03400 PF03466 LysR substrate binding domain HQ400_03405 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ400_03405 PF00578 AhpC/TSA family HQ400_03425 PF08003 Protein of unknown function (DUF1698) HQ400_03430 PF13649 Methyltransferase domain HQ400_03435 PF01904 Protein of unknown function DUF72 HQ400_03445 PF02938 GAD domain HQ400_03445 PF00152 tRNA synthetases class II (D, K and N) HQ400_03445 PF01336 OB-fold nucleic acid binding domain HQ400_03450 PF01709 Transcriptional regulator HQ400_03460 PF01914 MarC family integral membrane protein HQ400_03465 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_03470 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_03475 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_03475 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ400_03480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_03480 PF00005 ABC transporter HQ400_03485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_03485 PF00005 ABC transporter HQ400_03490 PF03741 Integral membrane protein TerC family HQ400_03495 PF00842 Alanine racemase, C-terminal domain HQ400_03495 PF01168 Alanine racemase, N-terminal domain HQ400_03505 PF00437 Type II/IV secretion system protein HQ400_03520 PF01032 FecCD transport family HQ400_03530 PF00793 DAHP synthetase I family HQ400_03535 PF01219 Prokaryotic diacylglycerol kinase HQ400_03540 PF01842 ACT domain HQ400_03540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ400_03540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ400_03545 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) HQ400_03550 PF01812 5-formyltetrahydrofolate cyclo-ligase family HQ400_03560 PF05173 Dihydrodipicolinate reductase, C-terminus HQ400_03560 PF01113 Dihydrodipicolinate reductase, N-terminus HQ400_03565 PF00117 Glutamine amidotransferase class-I HQ400_03565 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain HQ400_03570 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HQ400_03570 PF02142 MGS-like domain HQ400_03570 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ400_03580 PF07759 Protein of unknown function (DUF1615) HQ400_03600 PF18393 MotY N-terminal domain HQ400_03600 PF00691 OmpA family HQ400_03605 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_03610 PF10576 Iron-sulfur binding domain of endonuclease III HQ400_03610 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ400_03610 PF00633 Helix-hairpin-helix motif HQ400_03620 PF04205 FMN-binding domain HQ400_03625 PF03116 NQR2, RnfD, RnfE family HQ400_03635 PF04060 Putative Fe-S cluster HQ400_03640 PF02508 Rnf-Nqr subunit, membrane protein HQ400_03655 PF01609 Transposase DDE domain HQ400_03670 PF01609 Transposase DDE domain HQ400_03675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_03680 PF00849 RNA pseudouridylate synthase HQ400_03680 PF01479 S4 domain HQ400_03685 PF07690 Major Facilitator Superfamily HQ400_03695 PF03466 LysR substrate binding domain HQ400_03695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_03700 PF10689 Protein of unknown function (DUF2496) HQ400_03705 PF03061 Thioesterase superfamily HQ400_03710 PF04391 Protein of unknown function (DUF533) HQ400_03715 PF00155 Aminotransferase class I and II HQ400_03715 PF00392 Bacterial regulatory proteins, gntR family HQ400_03745 PF05114 Protein of unknown function (DUF692) HQ400_03760 PF02525 Flavodoxin-like fold HQ400_03770 PF00248 Aldo/keto reductase family HQ400_03785 PF01965 DJ-1/PfpI family HQ400_03790 PF16123 Hydroxyacylglutathione hydrolase C-terminus HQ400_03790 PF00753 Metallo-beta-lactamase superfamily HQ400_03800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_03815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_03815 PF03466 LysR substrate binding domain HQ400_03825 PF00672 HAMP domain HQ400_03825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_03825 PF02743 Cache domain HQ400_03830 PF00370 FGGY family of carbohydrate kinases, N-terminal domain HQ400_03830 PF02782 FGGY family of carbohydrate kinases, C-terminal domain HQ400_03835 PF00230 Major intrinsic protein HQ400_03840 PF07690 Major Facilitator Superfamily HQ400_03845 PF00455 DeoR C terminal sensor domain HQ400_03845 PF08220 DeoR-like helix-turn-helix domain HQ400_03850 PF01266 FAD dependent oxidoreductase HQ400_03850 PF16901 C-terminal domain of alpha-glycerophosphate oxidase HQ400_03855 PF03009 Glycerophosphoryl diester phosphodiesterase family HQ400_03860 PF03974 Ecotin HQ400_03865 PF04219 Protein of unknown function, DUF HQ400_03870 PF03466 LysR substrate binding domain HQ400_03870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_03880 PF00155 Aminotransferase class I and II HQ400_03895 PF03772 Competence protein HQ400_03895 PF00753 Metallo-beta-lactamase superfamily HQ400_03900 PF00664 ABC transporter transmembrane region HQ400_03900 PF00005 ABC transporter HQ400_03905 PF02606 Tetraacyldisaccharide-1-P 4'-kinase HQ400_03910 PF03966 Trm112p-like protein HQ400_03915 PF02348 Cytidylyltransferase HQ400_03920 PF00072 Response regulator receiver domain HQ400_03920 PF00196 Bacterial regulatory proteins, luxR family HQ400_03925 PF08459 UvrC Helix-hairpin-helix N-terminal HQ400_03925 PF02151 UvrB/uvrC motif HQ400_03925 PF01541 GIY-YIG catalytic domain HQ400_03930 PF01066 CDP-alcohol phosphatidyltransferase HQ400_03955 PF00589 Phage integrase family HQ400_03955 PF14659 Phage integrase, N-terminal SAM-like domain HQ400_03975 PF01609 Transposase DDE domain HQ400_03995 PF01609 Transposase DDE domain HQ400_04020 PF02661 Fic/DOC family HQ400_04020 PF13784 Fic/DOC family N-terminal HQ400_04030 PF01970 Tripartite tricarboxylate transporter TctA family HQ400_04045 PF00072 Response regulator receiver domain HQ400_04045 PF00486 Transcriptional regulatory protein, C terminal HQ400_04050 PF08521 Two-component sensor kinase N-terminal HQ400_04050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_04050 PF00512 His Kinase A (phospho-acceptor) domain HQ400_04055 PF04226 Transglycosylase associated protein HQ400_04060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_04060 PF00672 HAMP domain HQ400_04065 PF00149 Calcineurin-like phosphoesterase HQ400_04075 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ400_04080 PF01406 tRNA synthetases class I (C) catalytic domain HQ400_04080 PF09190 DALR domain HQ400_04090 PF13304 AAA domain, putative AbiEii toxin, Type IV TA system HQ400_04105 PF01609 Transposase DDE domain HQ400_04110 PF01979 Amidohydrolase family HQ400_04140 PF01169 Uncharacterized protein family UPF0016 HQ400_04145 PF01253 Translation initiation factor SUI1 HQ400_04155 PF17910 FeoB cytosolic helical domain HQ400_04155 PF07670 Nucleoside recognition HQ400_04155 PF02421 Ferrous iron transport protein B HQ400_04155 PF07664 Ferrous iron transport protein B C terminus HQ400_04170 PF00270 DEAD/DEAH box helicase HQ400_04170 PF00271 Helicase conserved C-terminal domain HQ400_04185 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_04190 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_04195 PF00005 ABC transporter HQ400_04200 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ400_04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_04210 PF04055 Radical SAM superfamily HQ400_04210 PF16199 Radical_SAM C-terminal domain HQ400_04215 PF00005 ABC transporter HQ400_04215 PF00664 ABC transporter transmembrane region HQ400_04215 PF03412 Peptidase C39 family HQ400_04255 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_04255 PF13192 Thioredoxin domain HQ400_04260 PF00578 AhpC/TSA family HQ400_04260 PF10417 C-terminal domain of 1-Cys peroxiredoxin HQ400_04270 PF00005 ABC transporter HQ400_04270 PF00571 CBS domain HQ400_04275 PF02547 Queuosine biosynthesis protein HQ400_04280 PF01702 Queuine tRNA-ribosyltransferase HQ400_04285 PF02699 Preprotein translocase subunit HQ400_04290 PF13721 SecD export protein N-terminal TM region HQ400_04290 PF07549 SecD/SecF GG Motif HQ400_04290 PF02355 Protein export membrane protein HQ400_04295 PF02355 Protein export membrane protein HQ400_04295 PF07549 SecD/SecF GG Motif HQ400_04305 PF07719 Tetratricopeptide repeat HQ400_04305 PF13181 Tetratricopeptide repeat HQ400_04310 PF01136 Peptidase family U32 HQ400_04315 PF01136 Peptidase family U32 HQ400_04320 PF02036 SCP-2 sterol transfer family HQ400_04330 PF00588 SpoU rRNA Methylase family HQ400_04335 PF02082 Transcriptional regulator HQ400_04340 PF00266 Aminotransferase class-V HQ400_04345 PF01592 NifU-like N terminal domain HQ400_04350 PF01521 Iron-sulphur cluster biosynthesis HQ400_04355 PF07743 HSCB C-terminal oligomerisation domain HQ400_04360 PF00012 Hsp70 protein HQ400_04365 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_04370 PF00883 Cytosol aminopeptidase family, catalytic domain HQ400_04370 PF12404 Peptidase HQ400_04375 PF00883 Cytosol aminopeptidase family, catalytic domain HQ400_04375 PF12404 Peptidase HQ400_04380 PF00334 Nucleoside diphosphate kinase HQ400_04385 PF04055 Radical SAM superfamily HQ400_04395 PF13464 Domain of unknown function (DUF4115) HQ400_04400 PF04551 GcpE protein HQ400_04405 PF03129 Anticodon binding domain HQ400_04405 PF13393 Histidyl-tRNA synthetase HQ400_04410 PF09976 Tetratricopeptide repeat-like domain HQ400_04415 PF13360 PQQ-like domain HQ400_04420 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal HQ400_04420 PF01926 50S ribosome-binding GTPase HQ400_04425 PF07191 zinc-ribbons HQ400_04430 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_04430 PF01464 Transglycosylase SLT domain HQ400_04435 PF02769 AIR synthase related protein, C-terminal domain HQ400_04435 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal HQ400_04435 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain HQ400_04440 PF00361 Proton-conducting membrane transporter HQ400_04445 PF00361 Proton-conducting membrane transporter HQ400_04450 PF00361 Proton-conducting membrane transporter HQ400_04450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus HQ400_04455 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L HQ400_04460 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 HQ400_04465 PF12838 4Fe-4S dicluster domain HQ400_04470 PF00146 NADH dehydrogenase HQ400_04475 PF00384 Molybdopterin oxidoreductase HQ400_04475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain HQ400_04475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region HQ400_04480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit HQ400_04480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ400_04490 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit HQ400_04490 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit HQ400_04495 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit HQ400_04500 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 HQ400_04505 PF00691 OmpA family HQ400_04505 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ400_04510 PF01618 MotA/TolQ/ExbB proton channel family HQ400_04525 PF04536 TPM domain HQ400_04535 PF03411 Penicillin-insensitive murein endopeptidase HQ400_04545 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_04550 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_04555 PF00005 ABC transporter HQ400_04565 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) HQ400_04570 PF00248 Aldo/keto reductase family HQ400_04580 PF00106 short chain dehydrogenase HQ400_04585 PF01212 Beta-eliminating lyase HQ400_04595 PF00072 Response regulator receiver domain HQ400_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_04600 PF03466 LysR substrate binding domain HQ400_04605 PF00563 EAL domain HQ400_04605 PF00990 Diguanylate cyclase, GGDEF domain HQ400_04605 PF03707 Bacterial signalling protein N terminal repeat HQ400_04605 PF13188 PAS domain HQ400_04610 PF03806 AbgT putative transporter family HQ400_04615 PF00881 Nitroreductase family HQ400_04630 PF07690 Major Facilitator Superfamily HQ400_04635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_04635 PF03466 LysR substrate binding domain HQ400_04640 PF03466 LysR substrate binding domain HQ400_04640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_04645 PF00925 GTP cyclohydrolase II HQ400_04650 PF02224 Cytidylate kinase HQ400_04655 PF00575 S1 RNA binding domain HQ400_04660 PF00216 Bacterial DNA-binding protein HQ400_04670 PF18073 Rubredoxin metal binding domain HQ400_04675 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family HQ400_04690 PF06508 Queuosine biosynthesis protein QueC HQ400_04695 PF04055 Radical SAM superfamily HQ400_04700 PF12843 Putative quorum-sensing-regulated virulence factor HQ400_04705 PF01923 Cobalamin adenosyltransferase HQ400_04710 PF00816 H-NS histone family HQ400_04715 PF03553 Na+/H+ antiporter family HQ400_04720 PF00265 Thymidine kinase HQ400_04730 PF10722 Putative bacterial sensory transduction regulator HQ400_04745 PF08019 Phosphoethanolamine transferase EptA/EptB HQ400_04745 PF00884 Sulfatase HQ400_04750 PF01219 Prokaryotic diacylglycerol kinase HQ400_04770 PF00672 HAMP domain HQ400_04770 PF00512 His Kinase A (phospho-acceptor) domain HQ400_04770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_04775 PF00072 Response regulator receiver domain HQ400_04775 PF00486 Transcriptional regulatory protein, C terminal HQ400_04800 PF00313 'Cold-shock' DNA-binding domain HQ400_04805 PF02617 ATP-dependent Clp protease adaptor protein ClpS HQ400_04810 PF17871 AAA lid domain HQ400_04810 PF02861 Clp amino terminal domain, pathogenicity island component HQ400_04810 PF10431 C-terminal, D2-small domain, of ClpB protein HQ400_04810 PF07724 AAA domain (Cdc48 subfamily) HQ400_04810 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_04815 PF01176 Translation initiation factor 1A / IF-1 HQ400_04820 PF04377 Arginine-tRNA-protein transferase, C terminus HQ400_04820 PF04376 Arginine-tRNA-protein transferase, N terminus HQ400_04825 PF03588 Leucyl/phenylalanyl-tRNA protein transferase HQ400_04830 PF05433 Glycine zipper 2TM domain HQ400_04835 PF00990 Diguanylate cyclase, GGDEF domain HQ400_04840 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_04845 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ400_04845 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ400_04850 PF01037 Lrp/AsnC ligand binding domain HQ400_04855 PF17854 FtsK alpha domain HQ400_04855 PF01580 FtsK/SpoIIIE family HQ400_04855 PF09397 Ftsk gamma domain HQ400_04855 PF13491 4TM region of DNA translocase FtsK/SpoIIIE HQ400_04860 PF03548 Outer membrane lipoprotein carrier protein LolA HQ400_04865 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_04865 PF12002 MgsA AAA+ ATPase C terminal HQ400_04865 PF16193 AAA C-terminal domain HQ400_04870 PF02403 Seryl-tRNA synthetase N-terminal domain HQ400_04870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ400_04875 PF02674 Colicin V production protein HQ400_04880 PF00156 Phosphoribosyl transferase domain HQ400_04885 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) HQ400_04890 PF05191 Adenylate kinase, active site lid HQ400_04895 PF00762 Ferrochelatase HQ400_04905 PF00294 pfkB family carbohydrate kinase HQ400_04920 PF00563 EAL domain HQ400_04920 PF00990 Diguanylate cyclase, GGDEF domain HQ400_04920 PF03707 Bacterial signalling protein N terminal repeat HQ400_04925 PF00483 Nucleotidyl transferase HQ400_04935 PF07273 Protein of unknown function (DUF1439) HQ400_04945 PF11143 Protein of unknown function (DUF2919) HQ400_04950 PF01544 CorA-like Mg2+ transporter protein HQ400_04960 PF01012 Electron transfer flavoprotein domain HQ400_04965 PF00766 Electron transfer flavoprotein FAD-binding domain HQ400_04965 PF01012 Electron transfer flavoprotein domain HQ400_04970 PF00266 Aminotransferase class-V HQ400_04975 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ400_04980 PF00793 DAHP synthetase I family HQ400_04985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_04985 PF00672 HAMP domain HQ400_04995 PF00270 DEAD/DEAH box helicase HQ400_04995 PF00271 Helicase conserved C-terminal domain HQ400_05010 PF07478 D-ala D-ala ligase C-terminus HQ400_05010 PF01820 D-ala D-ala ligase N-terminus HQ400_05015 PF01074 Glycosyl hydrolases family 38 N-terminal domain HQ400_05015 PF07748 Glycosyl hydrolases family 38 C-terminal domain HQ400_05015 PF09261 Alpha mannosidase middle domain HQ400_05020 PF02378 Phosphotransferase system, EIIC HQ400_05020 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_05020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ400_05025 PF00392 Bacterial regulatory proteins, gntR family HQ400_05025 PF07702 UTRA domain HQ400_05030 PF13742 OB-fold nucleic acid binding domain HQ400_05030 PF02601 Exonuclease VII, large subunit HQ400_05040 PF01609 Transposase DDE domain HQ400_05060 PF00478 IMP dehydrogenase / GMP reductase domain HQ400_05060 PF00571 CBS domain HQ400_05065 PF00117 Glutamine amidotransferase class-I HQ400_05065 PF02540 NAD synthase HQ400_05065 PF00958 GMP synthase C terminal domain HQ400_05085 PF01609 Transposase DDE domain HQ400_05095 PF05724 Thiopurine S-methyltransferase (TPMT) HQ400_05105 PF00300 Histidine phosphatase superfamily (branch 1) HQ400_05115 PF00892 EamA-like transporter family HQ400_05125 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain HQ400_05140 PF02687 FtsX-like permease family HQ400_05140 PF12704 MacB-like periplasmic core domain HQ400_05145 PF00005 ABC transporter HQ400_05150 PF02687 FtsX-like permease family HQ400_05150 PF12704 MacB-like periplasmic core domain HQ400_05165 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_05165 PF05698 Bacterial trigger factor protein (TF) C-terminus HQ400_05165 PF05697 Bacterial trigger factor protein (TF) HQ400_05170 PF00574 Clp protease HQ400_05175 PF06689 ClpX C4-type zinc finger HQ400_05175 PF07724 AAA domain (Cdc48 subfamily) HQ400_05175 PF10431 C-terminal, D2-small domain, of ClpB protein HQ400_05185 PF00216 Bacterial DNA-binding protein HQ400_05190 PF13145 PPIC-type PPIASE domain HQ400_05200 PF00474 Sodium:solute symporter family HQ400_05205 PF04341 Protein of unknown function, DUF485 HQ400_05220 PF00378 Enoyl-CoA hydratase/isomerase HQ400_05230 PF00583 Acetyltransferase (GNAT) family HQ400_05235 PF06167 Glucose-regulated metallo-peptidase M90 HQ400_05240 PF01184 GPR1/FUN34/yaaH family HQ400_05255 PF00376 MerR family regulatory protein HQ400_05255 PF09278 MerR, DNA binding HQ400_05260 PF00682 HMGL-like HQ400_05265 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ400_05265 PF00364 Biotin-requiring enzyme HQ400_05265 PF02785 Biotin carboxylase C-terminal domain HQ400_05265 PF00289 Biotin carboxylase, N-terminal domain HQ400_05270 PF00378 Enoyl-CoA hydratase/isomerase HQ400_05275 PF01039 Carboxyl transferase domain HQ400_05290 PF00378 Enoyl-CoA hydratase/isomerase HQ400_05295 PF00378 Enoyl-CoA hydratase/isomerase HQ400_05310 PF13520 Amino acid permease HQ400_05315 PF01925 Sulfite exporter TauE/SafE HQ400_05335 PF01609 Transposase DDE domain HQ400_05350 PF02634 FdhD/NarQ family HQ400_05355 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ400_05355 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ400_05360 PF01266 FAD dependent oxidoreductase HQ400_05380 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region HQ400_05380 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region HQ400_05385 PF04172 LrgB-like family HQ400_05390 PF03788 LrgA family HQ400_05405 PF08411 Exonuclease C-terminal HQ400_05405 PF00929 Exonuclease HQ400_05415 PF00990 Diguanylate cyclase, GGDEF domain HQ400_05415 PF08448 PAS fold HQ400_05420 PF01713 Smr domain HQ400_05425 PF05175 Methyltransferase small domain HQ400_05440 PF00271 Helicase conserved C-terminal domain HQ400_05440 PF00270 DEAD/DEAH box helicase HQ400_05445 PF01124 MAPEG family HQ400_05455 PF04293 SpoVR like protein HQ400_05460 PF04285 Protein of unknown function (DUF444) HQ400_05470 PF00270 DEAD/DEAH box helicase HQ400_05470 PF00271 Helicase conserved C-terminal domain HQ400_05470 PF00570 HRDC domain HQ400_05470 PF16124 RecQ zinc-binding HQ400_05470 PF09382 RQC domain HQ400_05475 PF00375 Sodium:dicarboxylate symporter family HQ400_05480 PF03222 Tryptophan/tyrosine permease family HQ400_05485 PF00293 NUDIX domain HQ400_05490 PF04715 Anthranilate synthase component I, N terminal region HQ400_05490 PF00425 chorismate binding enzyme HQ400_05500 PF03313 Serine dehydratase alpha chain HQ400_05500 PF03315 Serine dehydratase beta chain HQ400_05510 PF06865 Pyrimidine/purine nucleoside phosphorylase HQ400_05520 PF00365 Phosphofructokinase HQ400_05525 PF00121 Triosephosphate isomerase HQ400_05530 PF02698 DUF218 domain HQ400_05535 PF13847 Methyltransferase domain HQ400_05545 PF04288 MukE-like family HQ400_05555 PF03330 Lytic transglycolase HQ400_05555 PF05036 Sporulation related domain HQ400_05565 PF01327 Polypeptide deformylase HQ400_05585 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ400_05585 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ400_05590 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_05595 PF01546 Peptidase family M20/M25/M40 HQ400_05595 PF07687 Peptidase dimerisation domain HQ400_05600 PF01979 Amidohydrolase family HQ400_05605 PF00696 Amino acid kinase family HQ400_05610 PF00892 EamA-like transporter family HQ400_05615 PF02625 XdhC and CoxI family HQ400_05615 PF13478 XdhC Rossmann domain HQ400_05625 PF12804 MobA-like NTP transferase domain HQ400_05635 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ400_05635 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_05640 PF01979 Amidohydrolase family HQ400_05660 PF01979 Amidohydrolase family HQ400_05665 PF00860 Permease family HQ400_05670 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain HQ400_05670 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase HQ400_05675 PF03450 CO dehydrogenase flavoprotein C-terminal domain HQ400_05675 PF00941 FAD binding domain in molybdopterin dehydrogenase HQ400_05680 PF01799 [2Fe-2S] binding domain HQ400_05680 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_05685 PF05433 Glycine zipper 2TM domain HQ400_05700 PF00990 Diguanylate cyclase, GGDEF domain HQ400_05700 PF08448 PAS fold HQ400_05730 PF01502 Phosphoribosyl-AMP cyclohydrolase HQ400_05730 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase HQ400_05735 PF00977 Histidine biosynthesis protein HQ400_05740 PF00977 Histidine biosynthesis protein HQ400_05745 PF00117 Glutamine amidotransferase class-I HQ400_05755 PF00155 Aminotransferase class I and II HQ400_05760 PF00815 Histidinol dehydrogenase HQ400_05765 PF01634 ATP phosphoribosyltransferase HQ400_05765 PF08029 HisG, C-terminal domain HQ400_05775 PF04851 Type III restriction enzyme, res subunit HQ400_05775 PF13307 Helicase C-terminal domain HQ400_05780 PF00814 Glycoprotease family HQ400_05790 PF00561 alpha/beta hydrolase fold HQ400_05795 PF00501 AMP-binding enzyme HQ400_05795 PF13193 AMP-binding enzyme C-terminal domain HQ400_05800 PF00570 HRDC domain HQ400_05800 PF01612 3'-5' exonuclease HQ400_05805 PF00753 Metallo-beta-lactamase superfamily HQ400_05815 PF00586 AIR synthase related protein, N-terminal domain HQ400_05815 PF02769 AIR synthase related protein, C-terminal domain HQ400_05825 PF10672 S-adenosylmethionine-dependent methyltransferase HQ400_05825 PF17785 PUA-like domain HQ400_05830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_05830 PF12729 Four helix bundle sensory module for signal transduction HQ400_05830 PF00672 HAMP domain HQ400_05835 PF00708 Acylphosphatase HQ400_05845 PF08264 Anticodon-binding domain of tRNA HQ400_05845 PF09334 tRNA synthetases class I (M) HQ400_05845 PF01588 Putative tRNA binding domain HQ400_05850 PF10609 NUBPL iron-transfer P-loop NTPase HQ400_05855 PF00485 Phosphoribulokinase / Uridine kinase family HQ400_05860 PF00692 dUTPase HQ400_05865 PF01384 Phosphate transporter family HQ400_05875 PF00575 S1 RNA binding domain HQ400_05875 PF12111 Polyribonucleotide phosphorylase C terminal HQ400_05875 PF10150 Ribonuclease E/G family HQ400_05880 PF00849 RNA pseudouridylate synthase HQ400_05880 PF01479 S4 domain HQ400_05890 PF02545 Maf-like protein HQ400_05895 PF02620 Large ribosomal RNA subunit accumulation protein YceD HQ400_05900 PF01783 Ribosomal L32p protein family HQ400_05905 PF02504 Fatty acid synthesis protein HQ400_05910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ400_05910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ400_05925 PF00550 Phosphopantetheine attachment site HQ400_05930 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ400_05930 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ400_05935 PF01063 Amino-transferase class IV HQ400_05940 PF02618 YceG-like family HQ400_05945 PF02223 Thymidylate kinase HQ400_05950 PF09115 DNA polymerase III, delta subunit, C terminal HQ400_05955 PF01026 TatD related DNase HQ400_05960 PF00589 Phage integrase family HQ400_05975 PF02470 MlaD protein HQ400_05980 PF04403 Paraquat-inducible protein A HQ400_05995 PF00285 Citrate synthase, C-terminal domain HQ400_06000 PF03972 MmgE/PrpD family HQ400_06020 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain HQ400_06020 PF06974 Protein of unknown function (DUF1298) HQ400_06035 PF01609 Transposase DDE domain HQ400_06040 PF00106 short chain dehydrogenase HQ400_06050 PF07130 YebG protein HQ400_06070 PF13654 AAA domain HQ400_06070 PF05362 Lon protease (S16) C-terminal proteolytic domain HQ400_06080 PF04957 Ribosome modulation factor HQ400_06085 PF00005 ABC transporter HQ400_06085 PF16326 ABC transporter C-terminal domain HQ400_06085 PF12848 ABC transporter HQ400_06095 PF10672 S-adenosylmethionine-dependent methyltransferase HQ400_06095 PF02926 THUMP domain HQ400_06095 PF01170 Putative RNA methylase family UPF0020 HQ400_06100 PF01584 CheW-like domain HQ400_06100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_06100 PF01627 Hpt domain HQ400_06100 PF00072 Response regulator receiver domain HQ400_06115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_06115 PF00672 HAMP domain HQ400_06115 PF02743 Cache domain HQ400_06120 PF01584 CheW-like domain HQ400_06125 PF01739 CheR methyltransferase, SAM binding domain HQ400_06125 PF03705 CheR methyltransferase, all-alpha domain HQ400_06130 PF01339 CheB methylesterase HQ400_06130 PF00072 Response regulator receiver domain HQ400_06135 PF00360 Phytochrome region HQ400_06135 PF00990 Diguanylate cyclase, GGDEF domain HQ400_06135 PF01590 GAF domain HQ400_06135 PF00563 EAL domain HQ400_06145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_06145 PF00672 HAMP domain HQ400_06150 PF07126 Cell-division protein ZapC HQ400_06155 PF01180 Dihydroorotate dehydrogenase HQ400_06170 PF11940 Domain of unknown function (DUF3458) Ig-like fold HQ400_06170 PF17432 Domain of unknown function (DUF3458_C) ARM repeats HQ400_06170 PF01433 Peptidase family M1 domain HQ400_06175 PF11818 C-terminal domain of tail specific protease (DUF3340) HQ400_06175 PF00595 PDZ domain HQ400_06175 PF03572 Peptidase family S41 HQ400_06175 PF17804 Tail specific protease N-terminal domain HQ400_06180 PF17516 ProQ C-terminal domain HQ400_06180 PF04352 ProQ/FINO family HQ400_06185 PF13185 GAF domain HQ400_06195 PF00115 Cytochrome C and Quinol oxidase polypeptide I HQ400_06210 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP HQ400_06210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ400_06220 PF00403 Heavy-metal-associated domain HQ400_06235 PF00027 Cyclic nucleotide-binding domain HQ400_06235 PF13545 Crp-like helix-turn-helix domain HQ400_06240 PF00582 Universal stress protein family HQ400_06245 PF01171 PP-loop family HQ400_06260 PF00005 ABC transporter HQ400_06260 PF08402 TOBE domain HQ400_06265 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_06270 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_06280 PF00043 Glutathione S-transferase, C-terminal domain HQ400_06280 PF02798 Glutathione S-transferase, N-terminal domain HQ400_06285 PF05025 RbsD / FucU transport protein family HQ400_06290 PF00005 ABC transporter HQ400_06305 PF00294 pfkB family carbohydrate kinase HQ400_06310 PF00356 Bacterial regulatory proteins, lacI family HQ400_06335 PF00216 Bacterial DNA-binding protein HQ400_06340 PF03147 Ferredoxin-fold anticodon binding domain HQ400_06340 PF03484 tRNA synthetase B5 domain HQ400_06340 PF03483 B3/4 domain HQ400_06340 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain HQ400_06340 PF01588 Putative tRNA binding domain HQ400_06345 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain HQ400_06345 PF01409 tRNA synthetases class II core domain (F) HQ400_06355 PF00453 Ribosomal protein L20 HQ400_06360 PF01632 Ribosomal protein L35 HQ400_06365 PF05198 Translation initiation factor IF-3, N-terminal domain HQ400_06365 PF00707 Translation initiation factor IF-3, C-terminal domain HQ400_06370 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ400_06370 PF03129 Anticodon binding domain HQ400_06370 PF02824 TGS domain HQ400_06370 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ400_06380 PF04055 Radical SAM superfamily HQ400_06390 PF00128 Alpha amylase, catalytic domain HQ400_06395 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ400_06395 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ400_06405 PF13419 Haloacid dehalogenase-like hydrolase HQ400_06410 PF00317 Ribonucleotide reductase, all-alpha domain HQ400_06410 PF02867 Ribonucleotide reductase, barrel domain HQ400_06410 PF03477 ATP cone domain HQ400_06420 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_06425 PF03562 MltA specific insert domain HQ400_06425 PF06725 3D domain HQ400_06430 PF06945 Protein of unknown function (DUF1289) HQ400_06440 PF00294 pfkB family carbohydrate kinase HQ400_06445 PF00381 PTS HPr component phosphorylation site HQ400_06445 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_06450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ400_06450 PF00356 Bacterial regulatory proteins, lacI family HQ400_06455 PF03222 Tryptophan/tyrosine permease family HQ400_06465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain HQ400_06465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain HQ400_06465 PF00378 Enoyl-CoA hydratase/isomerase HQ400_06470 PF00108 Thiolase, N-terminal domain HQ400_06470 PF02803 Thiolase, C-terminal domain HQ400_06475 PF07726 ATPase family associated with various cellular activities (AAA) HQ400_06475 PF17863 AAA lid domain HQ400_06505 PF04542 Sigma-70 region 2 HQ400_06505 PF08281 Sigma-70, region 4 HQ400_06515 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ400_06520 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) HQ400_06525 PF00563 EAL domain HQ400_06525 PF08668 HDOD domain HQ400_06535 PF09278 MerR, DNA binding HQ400_06535 PF00376 MerR family regulatory protein HQ400_06555 PF01743 Poly A polymerase head domain HQ400_06555 PF02272 DHHA1 domain HQ400_06555 PF01368 DHH family HQ400_06555 PF00571 CBS domain HQ400_06560 PF01966 HD domain HQ400_06575 PF01609 Transposase DDE domain HQ400_06580 PF01609 Transposase DDE domain HQ400_06615 PF01609 Transposase DDE domain HQ400_06620 PF08329 Chitinase A, N-terminal domain HQ400_06620 PF00704 Glycosyl hydrolases family 18 HQ400_06625 PF01609 Transposase DDE domain HQ400_06635 PF03831 PhnA domain HQ400_06635 PF08274 PhnA Zinc-Ribbon HQ400_06640 PF05166 YcgL domain HQ400_06645 PF03775 Septum formation inhibitor MinC, C-terminal domain HQ400_06645 PF05209 Septum formation inhibitor MinC, N-terminal domain HQ400_06650 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain HQ400_06655 PF03776 Septum formation topological specificity factor MinE HQ400_06660 PF04269 Protein of unknown function, DUF440 HQ400_06665 PF00912 Transglycosylase HQ400_06670 PF04269 Protein of unknown function, DUF440 HQ400_06680 PF17783 CvfB-like winged helix domain HQ400_06680 PF13509 S1 domain HQ400_06705 PF02525 Flavodoxin-like fold HQ400_06710 PF00892 EamA-like transporter family HQ400_06720 PF13419 Haloacid dehalogenase-like hydrolase HQ400_06735 PF00677 Lumazine binding domain HQ400_06745 PF06786 Uncharacterised protein family (UPF0253) HQ400_06750 PF01554 MatE HQ400_06790 PF07152 YaeQ protein HQ400_06800 PF07840 FadR C-terminal domain HQ400_06800 PF00392 Bacterial regulatory proteins, gntR family HQ400_06805 PF06450 Bacterial Na+/H+ antiporter B (NhaB) HQ400_06810 PF02600 Disulfide bond formation protein DsbB HQ400_06840 PF02801 Beta-ketoacyl synthase, C-terminal domain HQ400_06840 PF00109 Beta-ketoacyl synthase, N-terminal domain HQ400_06845 PF05430 S-adenosyl-L-methionine-dependent methyltransferase HQ400_06845 PF01266 FAD dependent oxidoreductase HQ400_06860 PF03606 C4-dicarboxylate anaerobic carrier HQ400_06890 PF00136 DNA polymerase family B HQ400_06890 PF03104 DNA polymerase family B, exonuclease domain HQ400_06915 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ400_06930 PF01261 Xylose isomerase-like TIM barrel HQ400_06935 PF01965 DJ-1/PfpI family HQ400_06945 PF02575 YbaB/EbfC DNA-binding family HQ400_06950 PF12169 DNA polymerase III subunits gamma and tau domain III HQ400_06950 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding HQ400_06950 PF12170 DNA polymerase III tau subunit V interacting with alpha HQ400_06955 PF00156 Phosphoribosyl transferase domain HQ400_06960 PF04304 Protein of unknown function (DUF454) HQ400_06965 PF01207 Dihydrouridine synthase (Dus) HQ400_06975 PF07508 Recombinase HQ400_06975 PF00239 Resolvase, N terminal domain HQ400_06975 PF13408 Recombinase zinc beta ribbon domain HQ400_07065 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ400_07065 PF00883 Cytosol aminopeptidase family, catalytic domain HQ400_07115 PF11398 Protein of unknown function (DUF2813) HQ400_07130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_07130 PF03466 LysR substrate binding domain HQ400_07135 PF01925 Sulfite exporter TauE/SafE HQ400_07140 PF03942 DTW domain HQ400_07145 PF01047 MarR family HQ400_07145 PF00480 ROK family HQ400_07150 PF00672 HAMP domain HQ400_07150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_07150 PF17200 Single Cache domain 2 HQ400_07155 PF02810 SEC-C motif HQ400_07165 PF04324 BFD-like [2Fe-2S] binding domain HQ400_07165 PF01266 FAD dependent oxidoreductase HQ400_07170 PF00890 FAD binding domain HQ400_07175 PF02754 Cysteine-rich domain HQ400_07175 PF13183 4Fe-4S dicluster domain HQ400_07195 PF00202 Aminotransferase class-III HQ400_07200 PF00266 Aminotransferase class-V HQ400_07205 PF00392 Bacterial regulatory proteins, gntR family HQ400_07205 PF07702 UTRA domain HQ400_07215 PF00005 ABC transporter HQ400_07220 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_07225 PF01266 FAD dependent oxidoreductase HQ400_07255 PF01609 Transposase DDE domain HQ400_07265 PF01609 Transposase DDE domain HQ400_07275 PF00549 CoA-ligase HQ400_07275 PF08442 ATP-grasp domain HQ400_07280 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ400_07280 PF00364 Biotin-requiring enzyme HQ400_07280 PF02817 e3 binding domain HQ400_07285 PF00676 Dehydrogenase E1 component HQ400_07285 PF02779 Transketolase, pyrimidine binding domain HQ400_07285 PF16870 2-oxoglutarate dehydrogenase C-terminal HQ400_07285 PF16078 2-oxoglutarate dehydrogenase N-terminus HQ400_07290 PF13085 2Fe-2S iron-sulfur cluster binding domain HQ400_07295 PF02910 Fumarate reductase flavoprotein C-term HQ400_07295 PF00890 FAD binding domain HQ400_07300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ400_07305 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit HQ400_07315 PF00285 Citrate synthase, C-terminal domain HQ400_07325 PF13673 Acetyltransferase (GNAT) domain HQ400_07345 PF13673 Acetyltransferase (GNAT) domain HQ400_07350 PF00465 Iron-containing alcohol dehydrogenase HQ400_07355 PF08543 Phosphomethylpyrimidine kinase HQ400_07380 PF00664 ABC transporter transmembrane region HQ400_07380 PF00005 ABC transporter HQ400_07385 PF00005 ABC transporter HQ400_07385 PF00664 ABC transporter transmembrane region HQ400_07390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ400_07390 PF00512 His Kinase A (phospho-acceptor) domain HQ400_07390 PF00072 Response regulator receiver domain HQ400_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_07390 PF00672 HAMP domain HQ400_07390 PF01627 Hpt domain HQ400_07395 PF00085 Thioredoxin HQ400_07400 PF00939 Sodium:sulfate symporter transmembrane region HQ400_07405 PF00343 Carbohydrate phosphorylase HQ400_07420 PF03692 Putative zinc- or iron-chelating domain HQ400_07425 PF01228 Glycine radical HQ400_07425 PF02901 Pyruvate formate lyase-like HQ400_07430 PF01226 Formate/nitrite transporter HQ400_07435 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding HQ400_07435 PF18381 YcaO cyclodehydratase C-terminal domain HQ400_07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_07445 PF03466 LysR substrate binding domain HQ400_07460 PF08267 Cobalamin-independent synthase, N-terminal domain HQ400_07460 PF01717 Cobalamin-independent synthase, Catalytic domain HQ400_07465 PF03466 LysR substrate binding domain HQ400_07465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_07470 PF03466 LysR substrate binding domain HQ400_07470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_07475 PF13460 NAD(P)H-binding HQ400_07485 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ400_07490 PF00501 AMP-binding enzyme HQ400_07495 PF08891 YfcL protein HQ400_07505 PF03741 Integral membrane protein TerC family HQ400_07510 PF00691 OmpA family HQ400_07525 PF18024 Helix-turn-helix domain HQ400_07525 PF00158 Sigma-54 interaction domain HQ400_07530 PF01329 Pterin 4 alpha carbinolamine dehydratase HQ400_07535 PF00351 Biopterin-dependent aromatic amino acid hydroxylase HQ400_07540 PF05128 Domain of unknown function (DUF697) HQ400_07555 PF06667 Phage shock protein B HQ400_07560 PF04012 PspA/IM30 family HQ400_07565 PF02954 Bacterial regulatory protein, Fis family HQ400_07565 PF00158 Sigma-54 interaction domain HQ400_07570 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_07575 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_07580 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_07580 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ400_07585 PF00005 ABC transporter HQ400_07585 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_07590 PF00005 ABC transporter HQ400_07595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_07595 PF00183 Hsp90 protein HQ400_07600 PF13662 Toprim domain HQ400_07600 PF02132 RecR protein HQ400_07640 PF03239 Iron permease FTR1 family HQ400_07645 PF01593 Flavin containing amine oxidoreductase HQ400_07660 PF07690 Major Facilitator Superfamily HQ400_07670 PF13426 PAS domain HQ400_07670 PF08447 PAS fold HQ400_07670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_07675 PF08447 PAS fold HQ400_07675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_07680 PF00561 alpha/beta hydrolase fold HQ400_07860 PF10549 ORF11CD3 domain HQ400_07860 PF09669 Phage regulatory protein Rha (Phage_pRha) HQ400_07920 PF01625 Peptide methionine sulfoxide reductase HQ400_07930 PF00696 Amino acid kinase family HQ400_07930 PF01842 ACT domain HQ400_07945 PF02016 LD-carboxypeptidase N-terminal domain HQ400_07945 PF17676 LD-carboxypeptidase C-terminal domain HQ400_07950 PF01734 Patatin-like phospholipase HQ400_07960 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B HQ400_07960 PF00175 Oxidoreductase NAD-binding domain HQ400_07965 PF13187 4Fe-4S dicluster domain HQ400_07965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ400_07965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ400_07980 PF01906 Putative heavy-metal-binding HQ400_07985 PF05036 Sporulation related domain HQ400_07990 PF02875 Mur ligase family, glutamate ligase domain HQ400_07990 PF08245 Mur ligase middle domain HQ400_07995 PF01039 Carboxyl transferase domain HQ400_07995 PF17848 Acetyl-coA carboxylase zinc finger domain HQ400_08000 PF01416 tRNA pseudouridine synthase HQ400_08010 PF01118 Semialdehyde dehydrogenase, NAD binding domain HQ400_08010 PF02774 Semialdehyde dehydrogenase, dimerisation domain HQ400_08015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ400_08015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ400_08015 PF11890 Domain of unknown function (DUF3410) HQ400_08020 PF01569 PAP2 superfamily HQ400_08025 PF00929 Exonuclease HQ400_08030 PF13726 Na+-H+ antiporter family HQ400_08030 PF03553 Na+/H+ antiporter family HQ400_08035 PF03707 Bacterial signalling protein N terminal repeat HQ400_08035 PF13188 PAS domain HQ400_08035 PF00563 EAL domain HQ400_08035 PF00990 Diguanylate cyclase, GGDEF domain HQ400_08045 PF00271 Helicase conserved C-terminal domain HQ400_08045 PF00270 DEAD/DEAH box helicase HQ400_08045 PF03880 DbpA RNA binding domain HQ400_08050 PF03061 Thioesterase superfamily HQ400_08060 PF02913 FAD linked oxidases, C-terminal domain HQ400_08060 PF13183 4Fe-4S dicluster domain HQ400_08060 PF01565 FAD binding domain HQ400_08070 PF03741 Integral membrane protein TerC family HQ400_08070 PF03471 Transporter associated domain HQ400_08075 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ400_08080 PF00107 Zinc-binding dehydrogenase HQ400_08080 PF08240 Alcohol dehydrogenase GroES-like domain HQ400_08085 PF00962 Adenosine/AMP deaminase HQ400_08090 PF13344 Haloacid dehalogenase-like hydrolase HQ400_08120 PF14497 Glutathione S-transferase, C-terminal domain HQ400_08120 PF02798 Glutathione S-transferase, N-terminal domain HQ400_08130 PF04209 homogentisate 1,2-dioxygenase HQ400_08135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_08145 PF00849 RNA pseudouridylate synthase HQ400_08150 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08155 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08160 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_08165 PF00005 ABC transporter HQ400_08170 PF03956 Lysine exporter LysO HQ400_08175 PF01979 Amidohydrolase family HQ400_08180 PF04336 Acyl carrier protein phosphodiesterase HQ400_08190 PF03960 ArsC family HQ400_08200 PF01435 Peptidase family M48 HQ400_08200 PF07720 Tetratricopeptide repeat HQ400_08205 PF01206 Sulfurtransferase TusA HQ400_08220 PF00561 alpha/beta hydrolase fold HQ400_08230 PF00005 ABC transporter HQ400_08230 PF08402 TOBE domain HQ400_08235 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08240 PF14785 Maltose transport system permease protein MalF P2 domain HQ400_08240 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08245 PF01547 Bacterial extracellular solute-binding protein HQ400_08255 PF07208 Protein of unknown function (DUF1414) HQ400_08265 PF03180 NLPA lipoprotein HQ400_08270 PF01483 Proprotein convertase P-domain HQ400_08270 PF00082 Subtilase family HQ400_08295 PF00324 Amino acid permease HQ400_08320 PF01597 Glycine cleavage H-protein HQ400_08325 PF08669 Glycine cleavage T-protein C-terminal barrel domain HQ400_08325 PF01571 Aminomethyltransferase folate-binding domain HQ400_08330 PF01494 FAD binding domain HQ400_08335 PF01494 FAD binding domain HQ400_08340 PF03695 Uncharacterised protein family (UPF0149) HQ400_08345 PF05164 Cell division protein ZapA HQ400_08355 PF00384 Molybdopterin oxidoreductase HQ400_08360 PF02634 FdhD/NarQ family HQ400_08365 PF03466 LysR substrate binding domain HQ400_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_08375 PF00043 Glutathione S-transferase, C-terminal domain HQ400_08375 PF02798 Glutathione S-transferase, N-terminal domain HQ400_08385 PF00459 Inositol monophosphatase family HQ400_08390 PF00672 HAMP domain HQ400_08390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_08395 PF02535 ZIP Zinc transporter HQ400_08400 PF01048 Phosphorylase superfamily HQ400_08410 PF01497 Periplasmic binding protein HQ400_08415 PF02719 Polysaccharide biosynthesis protein HQ400_08430 PF02348 Cytidylyltransferase HQ400_08435 PF00202 Aminotransferase class-III HQ400_08445 PF02585 GlcNAc-PI de-N-acetylase HQ400_08460 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ400_08460 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ400_08470 PF02561 Flagellar protein FliS HQ400_08475 PF07196 Flagellin hook IN motif HQ400_08475 PF07195 Flagellar hook-associated protein 2 C-terminus HQ400_08475 PF02465 Flagellar hook-associated protein 2 N-terminus HQ400_08485 PF00700 Bacterial flagellin C-terminal helical region HQ400_08485 PF00669 Bacterial flagellin N-terminal helical region HQ400_08485 PF07196 Flagellin hook IN motif HQ400_08490 PF07196 Flagellin hook IN motif HQ400_08490 PF00700 Bacterial flagellin C-terminal helical region HQ400_08490 PF00669 Bacterial flagellin N-terminal helical region HQ400_08495 PF00669 Bacterial flagellin N-terminal helical region HQ400_08495 PF07196 Flagellin hook IN motif HQ400_08495 PF00700 Bacterial flagellin C-terminal helical region HQ400_08500 PF03458 UPF0126 domain HQ400_08510 PF02926 THUMP domain HQ400_08510 PF02568 Thiamine biosynthesis protein (ThiI) HQ400_08530 PF01835 MG2 domain HQ400_08530 PF17962 Bacterial macroglobulin domain 6 HQ400_08530 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain HQ400_08530 PF07703 Alpha-2-macroglobulin bait region domain HQ400_08530 PF00207 Alpha-2-macroglobulin family HQ400_08530 PF11974 Bacterial alpha-2-macroglobulin MG3 domain HQ400_08530 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain HQ400_08530 PF07678 A-macroglobulin TED domain HQ400_08530 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain HQ400_08550 PF04055 Radical SAM superfamily HQ400_08560 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_08565 PF05728 Uncharacterised protein family (UPF0227) HQ400_08570 PF00860 Permease family HQ400_08575 PF01432 Peptidase family M3 HQ400_08575 PF08439 Oligopeptidase F HQ400_08580 PF05661 Protein of unknown function (DUF808) HQ400_08590 PF00375 Sodium:dicarboxylate symporter family HQ400_08605 PF01979 Amidohydrolase family HQ400_08615 PF00672 HAMP domain HQ400_08615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_08620 PF01230 HIT domain HQ400_08655 PF07549 SecD/SecF GG Motif HQ400_08655 PF13721 SecD export protein N-terminal TM region HQ400_08655 PF02355 Protein export membrane protein HQ400_08660 PF07549 SecD/SecF GG Motif HQ400_08660 PF02355 Protein export membrane protein HQ400_08665 PF00483 Nucleotidyl transferase HQ400_08670 PF00793 DAHP synthetase I family HQ400_08685 PF13609 Gram-negative porin HQ400_08700 PF00850 Histone deacetylase domain HQ400_08705 PF07690 Major Facilitator Superfamily HQ400_08715 PF00245 Alkaline phosphatase HQ400_08720 PF00245 Alkaline phosphatase HQ400_08735 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ400_08735 PF14760 Rnk N-terminus HQ400_08740 PF00196 Bacterial regulatory proteins, luxR family HQ400_08740 PF00072 Response regulator receiver domain HQ400_08750 PF07690 Major Facilitator Superfamily HQ400_08760 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_08765 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08780 PF04116 Fatty acid hydroxylase superfamily HQ400_08785 PF13520 Amino acid permease HQ400_08790 PF02574 Homocysteine S-methyltransferase HQ400_08790 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ400_08790 PF00809 Pterin binding enzyme HQ400_08790 PF02310 B12 binding domain HQ400_08790 PF02607 B12 binding domain HQ400_08800 PF00571 CBS domain HQ400_08800 PF03471 Transporter associated domain HQ400_08800 PF01595 Cyclin M transmembrane N-terminal domain HQ400_08805 PF01895 PhoU domain HQ400_08810 PF00005 ABC transporter HQ400_08815 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08820 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_08825 PF14437 MafB19-like deaminase HQ400_08845 PF01274 Malate synthase HQ400_08850 PF00463 Isocitrate lyase family HQ400_08855 PF00308 Bacterial dnaA protein HQ400_08870 PF00586 AIR synthase related protein, N-terminal domain HQ400_08870 PF02769 AIR synthase related protein, C-terminal domain HQ400_08875 PF00551 Formyl transferase HQ400_08880 PF01784 NIF3 (NGG1p interacting factor 3) HQ400_08890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_08890 PF00512 His Kinase A (phospho-acceptor) domain HQ400_08890 PF13188 PAS domain HQ400_08895 PF06490 Flagellar regulatory protein FleQ HQ400_08895 PF02954 Bacterial regulatory protein, Fis family HQ400_08895 PF00158 Sigma-54 interaction domain HQ400_08905 PF01842 ACT domain HQ400_08910 PF13090 Polyphosphate kinase C-terminal domain 2 HQ400_08910 PF13089 Polyphosphate kinase N-terminal domain HQ400_08910 PF17941 Polyphosphate kinase C-terminal domain 1 HQ400_08910 PF02503 Polyphosphate kinase middle domain HQ400_08915 PF02541 Ppx/GppA phosphatase family HQ400_08920 PF03448 MgtE intracellular N domain HQ400_08920 PF01769 Divalent cation transporter HQ400_08920 PF00571 CBS domain HQ400_08925 PF00669 Bacterial flagellin N-terminal helical region HQ400_08935 PF10135 Rod binding protein HQ400_08935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase HQ400_08940 PF02119 Flagellar P-ring protein HQ400_08945 PF02107 Flagellar L-ring protein HQ400_08950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_08950 PF00460 Flagella basal body rod protein HQ400_08955 PF00460 Flagella basal body rod protein HQ400_08955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_08960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_08960 PF07559 Flagellar basal body protein FlaE HQ400_08960 PF00460 Flagella basal body rod protein HQ400_08965 PF13861 FlgD Tudor-like domain HQ400_08965 PF13860 FlgD Ig-like domain HQ400_08965 PF03963 Flagellar hook capping protein - N-terminal region HQ400_08970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_08970 PF00460 Flagella basal body rod protein HQ400_08975 PF00460 Flagella basal body rod protein HQ400_08980 PF03705 CheR methyltransferase, all-alpha domain HQ400_08980 PF01739 CheR methyltransferase, SAM binding domain HQ400_08985 PF01584 CheW-like domain HQ400_08985 PF00072 Response regulator receiver domain HQ400_08990 PF13144 Chaperone for flagella basal body P-ring formation HQ400_09005 PF12850 Calcineurin-like phosphoesterase superfamily domain HQ400_09010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_09020 PF01479 S4 domain HQ400_09020 PF00849 RNA pseudouridylate synthase HQ400_09025 PF11871 Domain of unknown function (DUF3391) HQ400_09025 PF01966 HD domain HQ400_09035 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ400_09040 PF04055 Radical SAM superfamily HQ400_09050 PF08220 DeoR-like helix-turn-helix domain HQ400_09050 PF00455 DeoR C terminal sensor domain HQ400_09085 PF00313 'Cold-shock' DNA-binding domain HQ400_09095 PF02780 Transketolase, C-terminal domain HQ400_09095 PF02779 Transketolase, pyrimidine binding domain HQ400_09100 PF00676 Dehydrogenase E1 component HQ400_09120 PF00550 Phosphopantetheine attachment site HQ400_09120 PF00857 Isochorismatase family HQ400_09130 PF00425 chorismate binding enzyme HQ400_09135 PF07715 TonB-dependent Receptor Plug Domain HQ400_09135 PF00593 TonB dependent receptor HQ400_09140 PF00793 DAHP synthetase I family HQ400_09145 PF00356 Bacterial regulatory proteins, lacI family HQ400_09150 PF01464 Transglycosylase SLT domain HQ400_09150 PF14718 Soluble lytic murein transglycosylase L domain HQ400_09155 PF00563 EAL domain HQ400_09155 PF00990 Diguanylate cyclase, GGDEF domain HQ400_09155 PF03707 Bacterial signalling protein N terminal repeat HQ400_09160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ400_09180 PF04357 TamB, inner membrane protein subunit of TAM complex HQ400_09185 PF17243 POTRA domain TamA domain 1 HQ400_09185 PF07244 Surface antigen variable number repeat HQ400_09185 PF01103 Surface antigen HQ400_09205 PF02627 Carboxymuconolactone decarboxylase family HQ400_09210 PF00403 Heavy-metal-associated domain HQ400_09210 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_09210 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ400_09215 PF13416 Bacterial extracellular solute-binding protein HQ400_09220 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_09225 PF00005 ABC transporter HQ400_09230 PF01066 CDP-alcohol phosphatidyltransferase HQ400_09235 PF13406 Transglycosylase SLT domain HQ400_09240 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ400_09240 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ400_09240 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ400_09240 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ400_09245 PF03925 SeqA protein C-terminal domain HQ400_09245 PF17206 SeqA protein N-terminal domain HQ400_09250 PF12697 Alpha/beta hydrolase family HQ400_09260 PF01402 Ribbon-helix-helix protein, copG family HQ400_09265 PF00258 Flavodoxin HQ400_09275 PF01475 Ferric uptake regulator family HQ400_09280 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain HQ400_09280 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ400_09285 PF03173 Putative carbohydrate binding domain HQ400_09285 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain HQ400_09285 PF00728 Glycosyl hydrolase family 20, catalytic domain HQ400_09285 PF02838 Glycosyl hydrolase family 20, domain 2 HQ400_09290 PF00367 phosphotransferase system, EIIB HQ400_09290 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ400_09290 PF02378 Phosphotransferase system, EIIC HQ400_09295 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase HQ400_09300 PF01979 Amidohydrolase family HQ400_09305 PF01047 MarR family HQ400_09305 PF00480 ROK family HQ400_09315 PF01966 HD domain HQ400_09320 PF07694 5TMR of 5TMR-LYT HQ400_09320 PF06580 Histidine kinase HQ400_09325 PF04397 LytTr DNA-binding domain HQ400_09325 PF00072 Response regulator receiver domain HQ400_09330 PF02554 Carbon starvation protein CstA HQ400_09340 PF11742 Protein of unknown function (DUF3302) HQ400_09345 PF00529 HlyD membrane-fusion protein of T1SS HQ400_09345 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_09350 PF00271 Helicase conserved C-terminal domain HQ400_09350 PF04851 Type III restriction enzyme, res subunit HQ400_09360 PF00462 Glutaredoxin HQ400_09365 PF03372 Endonuclease/Exonuclease/phosphatase family HQ400_09375 PF03061 Thioesterase superfamily HQ400_09380 PF01370 NAD dependent epimerase/dehydratase family HQ400_09390 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ400_09390 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg HQ400_09390 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase HQ400_09390 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II HQ400_09390 PF10371 Domain of unknown function HQ400_09395 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_09395 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region HQ400_09395 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster HQ400_09400 PF03473 MOSC domain HQ400_09400 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_09400 PF03476 MOSC N-terminal beta barrel domain HQ400_09400 PF03473 MOSC domain HQ400_09400 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_09400 PF03476 MOSC N-terminal beta barrel domain HQ400_09405 PF01435 Peptidase family M48 HQ400_09415 PF12697 Alpha/beta hydrolase family HQ400_09415 PF08241 Methyltransferase domain HQ400_09420 PF00155 Aminotransferase class I and II HQ400_09425 PF04055 Radical SAM superfamily HQ400_09425 PF06968 Biotin and Thiamin Synthesis associated domain HQ400_09430 PF00202 Aminotransferase class-III HQ400_09445 PF00152 tRNA synthetases class II (D, K and N) HQ400_09445 PF01336 OB-fold nucleic acid binding domain HQ400_09455 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ400_09465 PF01546 Peptidase family M20/M25/M40 HQ400_09465 PF07687 Peptidase dimerisation domain HQ400_09470 PF03606 C4-dicarboxylate anaerobic carrier HQ400_09480 PF03960 ArsC family HQ400_09485 PF01546 Peptidase family M20/M25/M40 HQ400_09485 PF07687 Peptidase dimerisation domain HQ400_09490 PF02557 D-alanyl-D-alanine carboxypeptidase HQ400_09500 PF00999 Sodium/hydrogen exchanger family HQ400_09500 PF03471 Transporter associated domain HQ400_09500 PF02080 TrkA-C domain HQ400_09510 PF02080 TrkA-C domain HQ400_09510 PF00999 Sodium/hydrogen exchanger family HQ400_09510 PF03471 Transporter associated domain HQ400_09520 PF12729 Four helix bundle sensory module for signal transduction HQ400_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_09520 PF00672 HAMP domain HQ400_09530 PF07509 Protein of unknown function (DUF1523) HQ400_09545 PF01156 Inosine-uridine preferring nucleoside hydrolase HQ400_09550 PF00849 RNA pseudouridylate synthase HQ400_09555 PF01048 Phosphorylase superfamily HQ400_09560 PF00465 Iron-containing alcohol dehydrogenase HQ400_09565 PF04355 SmpA / OmlA family HQ400_09570 PF13460 NAD(P)H-binding HQ400_09580 PF10437 Bacterial lipoate protein ligase C-terminus HQ400_09580 PF03099 Biotin/lipoate A/B protein ligase family HQ400_09585 PF00563 EAL domain HQ400_09585 PF00990 Diguanylate cyclase, GGDEF domain HQ400_09585 PF13426 PAS domain HQ400_09590 PF00873 AcrB/AcrD/AcrF family HQ400_09605 PF04143 Sulphur transport HQ400_09620 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_09630 PF02308 MgtC family HQ400_09635 PF00684 DnaJ central domain HQ400_09635 PF00226 DnaJ domain HQ400_09635 PF01556 DnaJ C terminal domain HQ400_09640 PF00012 Hsp70 protein HQ400_09645 PF01025 GrpE HQ400_09650 PF01513 ATP-NAD kinase HQ400_09655 PF02463 RecF/RecN/SMC N terminal domain HQ400_09660 PF02833 DHHA2 domain HQ400_09660 PF01368 DHH family HQ400_09665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_09675 PF02321 Outer membrane efflux protein HQ400_09680 PF01609 Transposase DDE domain HQ400_09685 PF00816 H-NS histone family HQ400_09690 PF01609 Transposase DDE domain HQ400_09730 PF01609 Transposase DDE domain HQ400_09735 PF02706 Chain length determinant protein HQ400_09740 PF02397 Bacterial sugar transferase HQ400_09745 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ400_09745 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ400_09745 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ400_09745 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ400_09750 PF01050 Mannose-6-phosphate isomerase HQ400_09750 PF00483 Nucleotidyl transferase HQ400_09755 PF00534 Glycosyl transferases group 1 HQ400_09755 PF09318 Glycosyl transferase 1 domain A HQ400_09780 PF03275 UDP-galactopyranose mutase HQ400_09785 PF01943 Polysaccharide biosynthesis protein HQ400_09790 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase HQ400_09795 PF00483 Nucleotidyl transferase HQ400_09800 PF04321 RmlD substrate binding domain HQ400_09805 PF16363 GDP-mannose 4,6 dehydratase HQ400_09810 PF00873 AcrB/AcrD/AcrF family HQ400_09815 PF00529 HlyD membrane-fusion protein of T1SS HQ400_09815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_09820 PF08361 MAATS-type transcriptional repressor, C-terminal region HQ400_09820 PF00440 Bacterial regulatory proteins, tetR family HQ400_09835 PF02001 Protein of unknown function DUF134 HQ400_09850 PF00072 Response regulator receiver domain HQ400_09855 PF18693 TRAM domain HQ400_09855 PF00919 Uncharacterized protein family UPF0004 HQ400_09855 PF04055 Radical SAM superfamily HQ400_09880 PF01048 Phosphorylase superfamily HQ400_09905 PF14821 Threonine synthase N terminus HQ400_09905 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_09910 PF08544 GHMP kinases C terminal HQ400_09910 PF00288 GHMP kinases N terminal domain HQ400_09915 PF00696 Amino acid kinase family HQ400_09915 PF03447 Homoserine dehydrogenase, NAD binding domain HQ400_09915 PF01842 ACT domain HQ400_09915 PF00742 Homoserine dehydrogenase HQ400_09915 PF13840 ACT domain HQ400_09920 PF00588 SpoU rRNA Methylase family HQ400_09940 PF02537 CrcB-like protein, Camphor Resistance (CrcB) HQ400_09945 PF02641 Uncharacterized ACR, COG1993 HQ400_09950 PF00849 RNA pseudouridylate synthase HQ400_09950 PF01479 S4 domain HQ400_09955 PF04079 Segregation and condensation complex subunit ScpB HQ400_09965 PF01300 Telomere recombination HQ400_09975 PF04715 Anthranilate synthase component I, N terminal region HQ400_09975 PF00425 chorismate binding enzyme HQ400_09980 PF00117 Glutamine amidotransferase class-I HQ400_09980 PF02885 Glycosyl transferase family, helical bundle domain HQ400_09980 PF00591 Glycosyl transferase family, a/b domain HQ400_09985 PF02885 Glycosyl transferase family, helical bundle domain HQ400_09985 PF00591 Glycosyl transferase family, a/b domain HQ400_09990 PF00218 Indole-3-glycerol phosphate synthase HQ400_09990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase HQ400_09995 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_10000 PF00290 Tryptophan synthase alpha chain HQ400_10005 PF01609 Transposase DDE domain HQ400_10015 PF01609 Transposase DDE domain HQ400_10025 PF07670 Nucleoside recognition HQ400_10025 PF07662 Na+ dependent nucleoside transporter C-terminus HQ400_10025 PF01773 Na+ dependent nucleoside transporter N-terminus HQ400_10030 PF03960 ArsC family HQ400_10035 PF01758 Sodium Bile acid symporter family HQ400_10040 PF02374 Anion-transporting ATPase HQ400_10045 PF06953 Arsenical resistance operon trans-acting repressor ArsD HQ400_10050 PF01022 Bacterial regulatory protein, arsR family HQ400_10065 PF03737 Aldolase/RraA HQ400_10075 PF00486 Transcriptional regulatory protein, C terminal HQ400_10075 PF00072 Response regulator receiver domain HQ400_10090 PF00005 ABC transporter HQ400_10090 PF00664 ABC transporter transmembrane region HQ400_10095 PF00005 ABC transporter HQ400_10095 PF00664 ABC transporter transmembrane region HQ400_10130 PF00072 Response regulator receiver domain HQ400_10130 PF00486 Transcriptional regulatory protein, C terminal HQ400_10150 PF05656 Protein of unknown function (DUF805) HQ400_10165 PF01609 Transposase DDE domain HQ400_10195 PF00171 Aldehyde dehydrogenase family HQ400_10200 PF00202 Aminotransferase class-III HQ400_10205 PF00324 Amino acid permease HQ400_10215 PF00324 Amino acid permease HQ400_10225 PF02690 Na+/Pi-cotransporter HQ400_10230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_10230 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ400_10235 PF04381 Putative exonuclease, RdgC HQ400_10250 PF13476 AAA domain HQ400_10255 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase HQ400_10265 PF00224 Pyruvate kinase, barrel domain HQ400_10265 PF02887 Pyruvate kinase, alpha/beta domain HQ400_10270 PF00924 Mechanosensitive ion channel HQ400_10270 PF12795 Mechanosensitive ion channel porin domain HQ400_10270 PF12794 Mechanosensitive ion channel inner membrane domain 1 HQ400_10275 PF00990 Diguanylate cyclase, GGDEF domain HQ400_10275 PF08448 PAS fold HQ400_10280 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ400_10285 PF05524 PEP-utilising enzyme, N-terminal HQ400_10285 PF00391 PEP-utilising enzyme, mobile domain HQ400_10285 PF02896 PEP-utilising enzyme, TIM barrel domain HQ400_10290 PF00381 PTS HPr component phosphorylation site HQ400_10295 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_10300 PF01434 Peptidase family M41 HQ400_10300 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_10300 PF17862 AAA+ lid domain HQ400_10310 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ400_10310 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ400_10315 PF00672 HAMP domain HQ400_10315 PF01966 HD domain HQ400_10320 PF13401 AAA domain HQ400_10320 PF01471 Putative peptidoglycan binding domain HQ400_10325 PF16537 Type II secretion system protein B HQ400_10330 PF11356 Type II secretion system protein C HQ400_10345 PF00482 Type II secretion system (T2SS), protein F HQ400_10350 PF07963 Prokaryotic N-terminal methylation motif HQ400_10350 PF08334 Type II secretion system (T2SS), protein G HQ400_10355 PF12019 Type II transport protein GspH HQ400_10355 PF07963 Prokaryotic N-terminal methylation motif HQ400_10360 PF07963 Prokaryotic N-terminal methylation motif HQ400_10360 PF02501 Type II secretion system (T2SS), protein I HQ400_10365 PF07963 Prokaryotic N-terminal methylation motif HQ400_10365 PF11612 Type II secretion system (T2SS), protein J HQ400_10370 PF03934 Type II secretion system (T2SS), protein K HQ400_10375 PF12693 GspL periplasmic domain HQ400_10375 PF05134 Type II secretion system (T2SS), protein L HQ400_10380 PF04612 Type II secretion system (T2SS), protein M HQ400_10385 PF01203 Type II secretion system (T2SS), protein N HQ400_10395 PF01027 Inhibitor of apoptosis-promoting Bax1 HQ400_10400 PF12805 FUSC-like inner membrane protein yccS HQ400_10405 PF04358 DsrC like protein HQ400_10410 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ400_10425 PF01609 Transposase DDE domain HQ400_10435 PF01609 Transposase DDE domain HQ400_10450 PF11842 Domain of unknown function (DUF3362) HQ400_10450 PF04055 Radical SAM superfamily HQ400_10450 PF08497 Radical SAM N-terminal HQ400_10460 PF00529 HlyD membrane-fusion protein of T1SS HQ400_10460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_10465 PF17158 Membrane-associated sensor, integral membrane domain HQ400_10465 PF00990 Diguanylate cyclase, GGDEF domain HQ400_10470 PF01734 Patatin-like phospholipase HQ400_10475 PF00209 Sodium:neurotransmitter symporter family HQ400_10490 PF00691 OmpA family HQ400_10490 PF01389 OmpA-like transmembrane domain HQ400_10495 PF00691 OmpA family HQ400_10495 PF01389 OmpA-like transmembrane domain HQ400_10500 PF00390 Malic enzyme, N-terminal domain HQ400_10500 PF03949 Malic enzyme, NAD binding domain HQ400_10505 PF12833 Helix-turn-helix domain HQ400_10515 PF10692 Protein of unknown function (DUF2498) HQ400_10525 PF01609 Transposase DDE domain HQ400_10535 PF00860 Permease family HQ400_10540 PF01235 Sodium:alanine symporter family HQ400_10545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ400_10545 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ400_10555 PF00462 Glutaredoxin HQ400_10555 PF08534 Redoxin HQ400_10565 PF00293 NUDIX domain HQ400_10580 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase HQ400_10580 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_10585 PF03932 CutC family HQ400_10600 PF01435 Peptidase family M48 HQ400_10605 PF12849 PBP superfamily domain HQ400_10610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_10610 PF00512 His Kinase A (phospho-acceptor) domain HQ400_10610 PF00989 PAS fold HQ400_10610 PF11808 Phosphate regulon sensor protein PhoR HQ400_10620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_10635 PF00892 EamA-like transporter family HQ400_10640 PF00072 Response regulator receiver domain HQ400_10640 PF12431 Transcriptional regulator HQ400_10655 PF03390 2-hydroxycarboxylate transporter family HQ400_10665 PF01047 MarR family HQ400_10670 PF00529 HlyD membrane-fusion protein of T1SS HQ400_10670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_10700 PF03477 ATP cone domain HQ400_10700 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ400_10710 PF00533 BRCA1 C Terminus (BRCT) domain HQ400_10710 PF01653 NAD-dependent DNA ligase adenylation domain HQ400_10710 PF03120 NAD-dependent DNA ligase OB-fold domain HQ400_10710 PF03119 NAD-dependent DNA ligase C4 zinc finger domain HQ400_10710 PF12826 Helix-hairpin-helix motif HQ400_10715 PF04354 ZipA, C-terminal FtsZ-binding domain HQ400_10720 PF06470 SMC proteins Flexible Hinge Domain HQ400_10720 PF02463 RecF/RecN/SMC N terminal domain HQ400_10730 PF03458 UPF0126 domain HQ400_10740 PF05951 Bacterial protein of unknown function (DUF882) HQ400_10745 PF01471 Putative peptidoglycan binding domain HQ400_10745 PF03734 L,D-transpeptidase catalytic domain HQ400_10760 PF00535 Glycosyl transferase family 2 HQ400_10775 PF00128 Alpha amylase, catalytic domain HQ400_10805 PF00999 Sodium/hydrogen exchanger family HQ400_10805 PF02080 TrkA-C domain HQ400_10805 PF02254 TrkA-N domain HQ400_10810 PF00990 Diguanylate cyclase, GGDEF domain HQ400_10820 PF01431 Peptidase family M13 HQ400_10820 PF05649 Peptidase family M13 HQ400_10830 PF08543 Phosphomethylpyrimidine kinase HQ400_10835 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain HQ400_10835 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain HQ400_10835 PF01276 Orn/Lys/Arg decarboxylase, major domain HQ400_10840 PF13520 Amino acid permease HQ400_10845 PF00486 Transcriptional regulatory protein, C terminal HQ400_10845 PF18500 CadC C-terminal domain 1 HQ400_10850 PF12848 ABC transporter HQ400_10850 PF00005 ABC transporter HQ400_10855 PF13302 Acetyltransferase (GNAT) domain HQ400_10860 PF13520 Amino acid permease HQ400_10865 PF03466 LysR substrate binding domain HQ400_10865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_10870 PF12706 Beta-lactamase superfamily domain HQ400_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_10885 PF03466 LysR substrate binding domain HQ400_10895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ400_10895 PF00205 Thiamine pyrophosphate enzyme, central domain HQ400_10895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ400_10900 PF03306 Alpha-acetolactate decarboxylase HQ400_10905 PF03466 LysR substrate binding domain HQ400_10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_10930 PF01042 Endoribonuclease L-PSP HQ400_10940 PF01609 Transposase DDE domain HQ400_10945 PF02780 Transketolase, C-terminal domain HQ400_10945 PF02779 Transketolase, pyrimidine binding domain HQ400_10945 PF00456 Transketolase, thiamine diphosphate binding domain HQ400_10950 PF02773 S-adenosylmethionine synthetase, C-terminal domain HQ400_10950 PF02772 S-adenosylmethionine synthetase, central domain HQ400_10950 PF00438 S-adenosylmethionine synthetase, N-terminal domain HQ400_10955 PF10263 SprT-like family HQ400_10955 PF17283 SprT-like zinc ribbon domain HQ400_10960 PF04231 Endonuclease I HQ400_10965 PF04452 RNA methyltransferase HQ400_10970 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain HQ400_10970 PF02951 Prokaryotic glutathione synthetase, N-terminal domain HQ400_10985 PF03652 Holliday junction resolvase HQ400_10995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_10995 PF03466 LysR substrate binding domain HQ400_11015 PF01609 Transposase DDE domain HQ400_11025 PF01609 Transposase DDE domain HQ400_11030 PF01609 Transposase DDE domain HQ400_11035 PF03466 LysR substrate binding domain HQ400_11035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_11040 PF07690 Major Facilitator Superfamily HQ400_11045 PF00144 Beta-lactamase HQ400_11060 PF11992 Domain of unknown function (DUF3488) HQ400_11060 PF13559 Domain of unknown function (DUF4129) HQ400_11060 PF01841 Transglutaminase-like superfamily HQ400_11065 PF01235 Sodium:alanine symporter family HQ400_11070 PF00923 Transaldolase/Fructose-6-phosphate aldolase HQ400_11080 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit HQ400_11085 PF14579 Helix-hairpin-helix motif HQ400_11085 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ400_11085 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ400_11085 PF02811 PHP domain HQ400_11085 PF01336 OB-fold nucleic acid binding domain HQ400_11090 PF01351 Ribonuclease HII HQ400_11095 PF02684 Lipid-A-disaccharide synthetase HQ400_11100 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 HQ400_11100 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_11105 PF07977 FabA-like domain HQ400_11110 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_11110 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD HQ400_11115 PF03938 Outer membrane protein (OmpH-like) HQ400_11120 PF01103 Surface antigen HQ400_11120 PF07244 Surface antigen variable number repeat HQ400_11125 PF17820 PDZ domain HQ400_11125 PF02163 Peptidase family M50 HQ400_11130 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase HQ400_11130 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain HQ400_11130 PF13288 DXP reductoisomerase C-terminal domain HQ400_11145 PF01765 Ribosome recycling factor HQ400_11155 PF00889 Elongation factor TS HQ400_11160 PF00318 Ribosomal protein S2 HQ400_11165 PF00557 Metallopeptidase family M24 HQ400_11175 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_11175 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_11175 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal HQ400_11180 PF11944 Protein of unknown function (DUF3461) HQ400_11190 PF07148 Maltose operon periplasmic protein precursor (MalM) HQ400_11195 PF02264 LamB porin HQ400_11200 PF00258 Flavodoxin HQ400_11205 PF00849 RNA pseudouridylate synthase HQ400_11210 PF04287 tRNA pseudouridine synthase C HQ400_11235 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ400_11255 PF02796 Helix-turn-helix domain of resolvase HQ400_11255 PF00239 Resolvase, N terminal domain HQ400_11295 PF00075 RNase H HQ400_11315 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) HQ400_11320 PF07348 Syd protein (SUKH-2) HQ400_11325 PF14489 QueF-like protein HQ400_11325 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term HQ400_11335 PF00990 Diguanylate cyclase, GGDEF domain HQ400_11340 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases HQ400_11340 PF03641 Possible lysine decarboxylase HQ400_11340 PF11892 Domain of unknown function (DUF3412) HQ400_11345 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ400_11345 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ400_11350 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ400_11350 PF18324 Hypothetical protein TT1725 HQ400_11360 PF01728 FtsJ-like methyltransferase HQ400_11360 PF18125 RlmM ferredoxin-like domain HQ400_11365 PF04241 Protein of unknown function (DUF423) HQ400_11375 PF03466 LysR substrate binding domain HQ400_11375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_11380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_11380 PF00672 HAMP domain HQ400_11385 PF11798 IMS family HHH motif HQ400_11385 PF11799 impB/mucB/samB family C-terminal domain HQ400_11385 PF00817 impB/mucB/samB family HQ400_11395 PF01965 DJ-1/PfpI family HQ400_11400 PF08546 Ketopantoate reductase PanE/ApbA C terminal HQ400_11400 PF02558 Ketopantoate reductase PanE/ApbA HQ400_11405 PF04461 Protein of unknown function (DUF520) HQ400_11410 PF03502 Nucleoside-specific channel-forming protein, Tsx HQ400_11415 PF07690 Major Facilitator Superfamily HQ400_11420 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD HQ400_11435 PF01722 BolA-like protein HQ400_11440 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) HQ400_11440 PF11973 NQRA C-terminal domain HQ400_11450 PF04205 FMN-binding domain HQ400_11455 PF02508 Rnf-Nqr subunit, membrane protein HQ400_11460 PF02508 Rnf-Nqr subunit, membrane protein HQ400_11465 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_11465 PF00175 Oxidoreductase NAD-binding domain HQ400_11465 PF00970 Oxidoreductase FAD-binding domain HQ400_11470 PF02424 ApbE family HQ400_11515 PF00106 short chain dehydrogenase HQ400_11535 PF08349 Protein of unknown function (DUF1722) HQ400_11550 PF06508 Queuosine biosynthesis protein QueC HQ400_11565 PF01817 Chorismate mutase type II HQ400_11565 PF00800 Prephenate dehydratase HQ400_11590 PF02146 Sir2 family HQ400_11630 PF01609 Transposase DDE domain HQ400_11635 PF01609 Transposase DDE domain HQ400_11645 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_11645 PF17862 AAA+ lid domain HQ400_11645 PF06480 FtsH Extracellular HQ400_11645 PF01434 Peptidase family M41 HQ400_11705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_11710 PF03573 outer membrane porin, OprD family HQ400_11715 PF00106 short chain dehydrogenase HQ400_11740 PF02074 Carboxypeptidase Taq (M32) metallopeptidase HQ400_11750 PF02805 Metal binding domain of Ada HQ400_11750 PF06029 AlkA N-terminal domain HQ400_11750 PF12833 Helix-turn-helix domain HQ400_11750 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ400_11755 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ400_11755 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ400_11760 PF12392 Collagenase HQ400_11760 PF01136 Peptidase family U32 HQ400_11765 PF01810 LysE type translocator HQ400_11770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_11770 PF03466 LysR substrate binding domain HQ400_11775 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III HQ400_11775 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal HQ400_11780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_11780 PF02743 Cache domain HQ400_11780 PF00672 HAMP domain HQ400_11785 PF00072 Response regulator receiver domain HQ400_11810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_11810 PF12729 Four helix bundle sensory module for signal transduction HQ400_11810 PF00672 HAMP domain HQ400_11815 PF01584 CheW-like domain HQ400_11820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_11820 PF00672 HAMP domain HQ400_11825 PF01739 CheR methyltransferase, SAM binding domain HQ400_11825 PF03705 CheR methyltransferase, all-alpha domain HQ400_11830 PF03975 CheD chemotactic sensory transduction HQ400_11835 PF01339 CheB methylesterase HQ400_11835 PF00072 Response regulator receiver domain HQ400_11840 PF01138 3' exoribonuclease family, domain 1 HQ400_11840 PF03725 3' exoribonuclease family, domain 2 HQ400_11840 PF00575 S1 RNA binding domain HQ400_11840 PF00013 KH domain HQ400_11840 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain HQ400_11845 PF00312 Ribosomal protein S15 HQ400_11850 PF01509 TruB family pseudouridylate synthase (N terminal domain) HQ400_11850 PF16198 tRNA pseudouridylate synthase B C-terminal domain HQ400_11850 PF09157 Pseudouridine synthase II TruB, C-terminal HQ400_11855 PF02033 Ribosome-binding factor A HQ400_11865 PF08529 NusA N-terminal domain HQ400_11865 PF13184 NusA-like KH domain HQ400_11865 PF00575 S1 RNA binding domain HQ400_11870 PF17384 RimP C-terminal SH3 domain HQ400_11870 PF02576 RimP N-terminal domain HQ400_11885 PF03840 Preprotein translocase SecG subunit HQ400_11890 PF00121 Triosephosphate isomerase HQ400_11895 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I HQ400_11895 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II HQ400_11895 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III HQ400_11895 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain HQ400_11900 PF00809 Pterin binding enzyme HQ400_11905 PF06480 FtsH Extracellular HQ400_11905 PF01434 Peptidase family M41 HQ400_11905 PF17862 AAA+ lid domain HQ400_11905 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_11915 PF01985 CRS1 / YhbY (CRM) domain HQ400_11925 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ400_11925 PF03449 Transcription elongation factor, N-terminal HQ400_11935 PF01618 MotA/TolQ/ExbB proton channel family HQ400_11940 PF02609 Exonuclease VII small subunit HQ400_11945 PF00348 Polyprenyl synthetase HQ400_11955 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_11955 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ400_11960 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_11965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_11970 PF00005 ABC transporter HQ400_11970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_11975 PF04608 Phosphatidylglycerophosphatase A HQ400_11980 PF00586 AIR synthase related protein, N-terminal domain HQ400_11980 PF02769 AIR synthase related protein, C-terminal domain HQ400_11985 PF01029 NusB family HQ400_11990 PF00885 6,7-dimethyl-8-ribityllumazine synthase HQ400_12010 PF03477 ATP cone domain HQ400_12020 PF00464 Serine hydroxymethyltransferase HQ400_12035 PF02613 Nitrate reductase delta subunit HQ400_12045 PF03707 Bacterial signalling protein N terminal repeat HQ400_12045 PF00563 EAL domain HQ400_12045 PF00990 Diguanylate cyclase, GGDEF domain HQ400_12055 PF13193 AMP-binding enzyme C-terminal domain HQ400_12055 PF16177 Acetyl-coenzyme A synthetase N-terminus HQ400_12055 PF00501 AMP-binding enzyme HQ400_12060 PF01220 Dehydroquinase class II HQ400_12065 PF00364 Biotin-requiring enzyme HQ400_12070 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain HQ400_12070 PF02785 Biotin carboxylase C-terminal domain HQ400_12070 PF00289 Biotin carboxylase, N-terminal domain HQ400_12075 PF06196 Protein of unknown function (DUF997) HQ400_12080 PF00474 Sodium:solute symporter family HQ400_12085 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 HQ400_12085 PF00367 phosphotransferase system, EIIB HQ400_12085 PF02378 Phosphotransferase system, EIIC HQ400_12095 PF08240 Alcohol dehydrogenase GroES-like domain HQ400_12095 PF00107 Zinc-binding dehydrogenase HQ400_12105 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ400_12105 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ400_12110 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_12110 PF12464 Maltose acetyltransferase HQ400_12115 PF00881 Nitroreductase family HQ400_12120 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ400_12120 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_12125 PF01343 Peptidase family S49 HQ400_12130 PF17969 L,D-transpeptidase C-terminal domain HQ400_12130 PF03734 L,D-transpeptidase catalytic domain HQ400_12145 PF02472 Biopolymer transport protein ExbD/TolR HQ400_12150 PF01618 MotA/TolQ/ExbB proton channel family HQ400_12155 PF01618 MotA/TolQ/ExbB proton channel family HQ400_12165 PF07715 TonB-dependent Receptor Plug Domain HQ400_12165 PF00593 TonB dependent receptor HQ400_12170 PF01609 Transposase DDE domain HQ400_12180 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_12185 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_12185 PF12911 N-terminal TM domain of oligopeptide transport permease C HQ400_12195 PF00005 ABC transporter HQ400_12195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_12200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region HQ400_12200 PF00005 ABC transporter HQ400_12210 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ400_12210 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ400_12210 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ400_12215 PF01370 NAD dependent epimerase/dehydratase family HQ400_12240 PF01464 Transglycosylase SLT domain HQ400_12255 PF12848 ABC transporter HQ400_12255 PF00005 ABC transporter HQ400_12265 PF00860 Permease family HQ400_12270 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ400_12285 PF00313 'Cold-shock' DNA-binding domain HQ400_12325 PF00929 Exonuclease HQ400_12330 PF03193 RsgA GTPase HQ400_12335 PF02666 Phosphatidylserine decarboxylase HQ400_12340 PF09905 DNA-binding protein VF530 HQ400_12365 PF07417 Sigma factor-binding transcriptional regulator Crl HQ400_12375 PF00156 Phosphoribosyl transferase domain HQ400_12380 PF07687 Peptidase dimerisation domain HQ400_12380 PF01546 Peptidase family M20/M25/M40 HQ400_12385 PF05099 Tellurite resistance protein TerB HQ400_12385 PF00226 DnaJ domain HQ400_12390 PF00483 Nucleotidyl transferase HQ400_12395 PF01636 Phosphotransferase enzyme family HQ400_12400 PF04453 LPS transport system D HQ400_12400 PF03968 OstA-like protein HQ400_12405 PF00639 PPIC-type PPIASE domain HQ400_12405 PF09312 SurA N-terminal domain HQ400_12410 PF04166 Pyridoxal phosphate biosynthetic protein PdxA HQ400_12415 PF00398 Ribosomal RNA adenine dimethylase HQ400_12420 PF04379 ApaG domain HQ400_12425 PF00149 Calcineurin-like phosphoesterase HQ400_12435 PF00296 Luciferase-like monooxygenase HQ400_12440 PF07670 Nucleoside recognition HQ400_12445 PF01018 GTP1/OBG HQ400_12445 PF01926 50S ribosome-binding GTPase HQ400_12450 PF01016 Ribosomal L27 protein HQ400_12455 PF00829 Ribosomal prokaryotic L21 protein HQ400_12460 PF00348 Polyprenyl synthetase HQ400_12465 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) HQ400_12470 PF01145 SPFH domain / Band 7 family HQ400_12475 PF01145 SPFH domain / Band 7 family HQ400_12475 PF12221 Bacterial membrane protein N terminal HQ400_12480 PF16360 GTP-binding GTPase Middle Region HQ400_12480 PF13167 GTP-binding GTPase N-terminal HQ400_12480 PF01926 50S ribosome-binding GTPase HQ400_12485 PF17209 Hfq protein HQ400_12495 PF01119 DNA mismatch repair protein, C-terminal domain HQ400_12495 PF08676 MutL C terminal dimerisation domain HQ400_12500 PF01520 N-acetylmuramoyl-L-alanine amidase HQ400_12505 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE HQ400_12510 PF01256 Carbohydrate kinase HQ400_12510 PF03853 YjeF-related protein N-terminus HQ400_12515 PF08331 Domain of unknown function (DUF1730) HQ400_12520 PF00480 ROK family HQ400_12535 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_12540 PF03180 NLPA lipoprotein HQ400_12545 PF02357 Transcription termination factor nusG HQ400_12550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_12550 PF00672 HAMP domain HQ400_12555 PF00563 EAL domain HQ400_12555 PF03707 Bacterial signalling protein N terminal repeat HQ400_12555 PF00990 Diguanylate cyclase, GGDEF domain HQ400_12575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_12575 PF00512 His Kinase A (phospho-acceptor) domain HQ400_12575 PF18415 Histidine kinase receptor ArcB trans-membrane domain HQ400_12575 PF01627 Hpt domain HQ400_12575 PF00989 PAS fold HQ400_12575 PF00072 Response regulator receiver domain HQ400_12595 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) HQ400_12600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_12600 PF03466 LysR substrate binding domain HQ400_12610 PF01259 SAICAR synthetase HQ400_12615 PF06804 NlpB/DapX lipoprotein HQ400_12620 PF00701 Dihydrodipicolinate synthetase family HQ400_12625 PF01842 ACT domain HQ400_12630 PF00578 AhpC/TSA family HQ400_12635 PF03887 YfbU domain HQ400_12640 PF04217 Protein of unknown function, DUF412 HQ400_12645 PF00871 Acetokinase family HQ400_12650 PF07085 DRTGG domain HQ400_12650 PF01515 Phosphate acetyl/butaryl transferase HQ400_12660 PF00483 Nucleotidyl transferase HQ400_12665 PF00854 POT family HQ400_12670 PF00072 Response regulator receiver domain HQ400_12700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_12705 PF02321 Outer membrane efflux protein HQ400_12710 PF01207 Dihydrouridine synthase (Dus) HQ400_12715 PF02954 Bacterial regulatory protein, Fis family HQ400_12720 PF00072 Response regulator receiver domain HQ400_12720 PF00990 Diguanylate cyclase, GGDEF domain HQ400_12725 PF00486 Transcriptional regulatory protein, C terminal HQ400_12725 PF00072 Response regulator receiver domain HQ400_12730 PF17149 Periplasmic sensor domain found in signal transduction proteins HQ400_12730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_12730 PF00512 His Kinase A (phospho-acceptor) domain HQ400_12730 PF01627 Hpt domain HQ400_12730 PF00072 Response regulator receiver domain HQ400_12730 PF00672 HAMP domain HQ400_12735 PF00512 His Kinase A (phospho-acceptor) domain HQ400_12735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_12735 PF00989 PAS fold HQ400_12735 PF16736 Single Cache-like HQ400_12745 PF01609 Transposase DDE domain HQ400_12775 PF04002 RadC-like JAB domain HQ400_12815 PF05930 Prophage CP4-57 regulatory protein (AlpA) HQ400_12825 PF01609 Transposase DDE domain HQ400_12855 PF03466 LysR substrate binding domain HQ400_12855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_12860 PF01810 LysE type translocator HQ400_12865 PF10369 Small subunit of acetolactate synthase HQ400_12870 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ400_12870 PF00205 Thiamine pyrophosphate enzyme, central domain HQ400_12870 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ400_12885 PF01569 PAP2 superfamily HQ400_12895 PF08502 LeuA allosteric (dimerisation) domain HQ400_12895 PF00682 HMGL-like HQ400_12900 PF00180 Isocitrate/isopropylmalate dehydrogenase HQ400_12905 PF00330 Aconitase family (aconitate hydratase) HQ400_12910 PF00694 Aconitase C-terminal domain HQ400_12930 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_12935 PF00005 ABC transporter HQ400_12940 PF02562 PhoH-like protein HQ400_12940 PF13638 PIN domain HQ400_12980 PF00563 EAL domain HQ400_12980 PF03707 Bacterial signalling protein N terminal repeat HQ400_12980 PF00990 Diguanylate cyclase, GGDEF domain HQ400_12990 PF00118 TCP-1/cpn60 chaperonin family HQ400_12995 PF00166 Chaperonin 10 Kd subunit HQ400_13000 PF01554 MatE HQ400_13005 PF04186 FxsA cytoplasmic membrane protein HQ400_13010 PF00206 Lyase HQ400_13010 PF10415 Fumarase C C-terminus HQ400_13015 PF03605 Anaerobic c4-dicarboxylate membrane transporter HQ400_13025 PF01165 Ribosomal protein S21 HQ400_13030 PF09424 Yqey-like protein HQ400_13035 PF10410 DnaB-helicase binding domain of primase HQ400_13035 PF01807 CHC2 zinc finger HQ400_13035 PF08278 DNA primase DnaG DnaB-binding HQ400_13035 PF08275 DNA primase catalytic core, N-terminal domain HQ400_13040 PF04542 Sigma-70 region 2 HQ400_13040 PF00140 Sigma-70 factor, region 1.2 HQ400_13040 PF04545 Sigma-70, region 4 HQ400_13040 PF04539 Sigma-70 region 3 HQ400_13040 PF04546 Sigma-70, non-essential region HQ400_13040 PF03979 Sigma-70 factor, region 1.1 HQ400_13060 PF02843 Phosphoribosylglycinamide synthetase, C domain HQ400_13060 PF02844 Phosphoribosylglycinamide synthetase, N domain HQ400_13060 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain HQ400_13065 PF02142 MGS-like domain HQ400_13065 PF01808 AICARFT/IMPCHase bienzyme HQ400_13070 PF13411 MerR HTH family regulatory protein HQ400_13075 PF03889 Alternative ribosome-rescue factor A HQ400_13080 PF06969 HemN C-terminal domain HQ400_13080 PF04055 Radical SAM superfamily HQ400_13085 PF01725 Ham1 family HQ400_13090 PF07690 Major Facilitator Superfamily HQ400_13095 PF01408 Oxidoreductase family, NAD-binding Rossmann fold HQ400_13095 PF02894 Oxidoreductase family, C-terminal alpha/beta domain HQ400_13105 PF13302 Acetyltransferase (GNAT) domain HQ400_13115 PF07504 Fungalysin/Thermolysin Propeptide Motif HQ400_13115 PF03413 Peptidase propeptide and YPEB domain HQ400_13115 PF01447 Thermolysin metallopeptidase, catalytic domain HQ400_13115 PF02868 Thermolysin metallopeptidase, alpha-helical domain HQ400_13115 PF04151 Bacterial pre-peptidase C-terminal domain HQ400_13120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_13120 PF03466 LysR substrate binding domain HQ400_13125 PF07690 Major Facilitator Superfamily HQ400_13130 PF00583 Acetyltransferase (GNAT) family HQ400_13135 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_13135 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_13135 PF12804 MobA-like NTP transferase domain HQ400_13140 PF00009 Elongation factor Tu GTP binding domain HQ400_13140 PF03144 Elongation factor Tu domain 2 HQ400_13140 PF16658 Class II release factor RF3, C-terminal domain HQ400_13150 PF05762 VWA domain containing CoxE-like protein HQ400_13165 PF00583 Acetyltransferase (GNAT) family HQ400_13165 PF13673 Acetyltransferase (GNAT) domain HQ400_13170 PF00501 AMP-binding enzyme HQ400_13175 PF04262 Glutamate-cysteine ligase HQ400_13180 PF00675 Insulinase (Peptidase family M16) HQ400_13180 PF05193 Peptidase M16 inactive domain HQ400_13185 PF09335 SNARE associated Golgi protein HQ400_13210 PF00970 Oxidoreductase FAD-binding domain HQ400_13210 PF00175 Oxidoreductase NAD-binding domain HQ400_13215 PF01281 Ribosomal protein L9, N-terminal domain HQ400_13215 PF03948 Ribosomal protein L9, C-terminal domain HQ400_13220 PF01084 Ribosomal protein S18 HQ400_13225 PF01250 Ribosomal protein S6 HQ400_13230 PF01566 Natural resistance-associated macrophage protein HQ400_13245 PF00216 Bacterial DNA-binding protein HQ400_13250 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ HQ400_13255 PF07238 PilZ domain HQ400_13260 PF18073 Rubredoxin metal binding domain HQ400_13275 PF18429 Domain of unknown function (DUF5609) HQ400_13285 PF01048 Phosphorylase superfamily HQ400_13290 PF01676 Metalloenzyme superfamily HQ400_13295 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain HQ400_13295 PF00591 Glycosyl transferase family, a/b domain HQ400_13295 PF02885 Glycosyl transferase family, helical bundle domain HQ400_13300 PF01791 DeoC/LacD family aldolase HQ400_13310 PF07662 Na+ dependent nucleoside transporter C-terminus HQ400_13310 PF07670 Nucleoside recognition HQ400_13310 PF01773 Na+ dependent nucleoside transporter N-terminus HQ400_13315 PF01026 TatD related DNase HQ400_13320 PF07963 Prokaryotic N-terminal methylation motif HQ400_13325 PF02664 S-Ribosylhomocysteinase (LuxS) HQ400_13335 PF00543 Nitrogen regulatory protein P-II HQ400_13340 PF00795 Carbon-nitrogen hydrolase HQ400_13340 PF02540 NAD synthase HQ400_13345 PF07963 Prokaryotic N-terminal methylation motif HQ400_13390 PF02401 LytB protein HQ400_13395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase HQ400_13405 PF08264 Anticodon-binding domain of tRNA HQ400_13405 PF00133 tRNA synthetases class I (I, L, M and V) HQ400_13405 PF06827 Zinc finger found in FPG and IleRS HQ400_13410 PF06574 FAD synthetase HQ400_13410 PF01687 Riboflavin kinase HQ400_13415 PF03023 Lipid II flippase MurJ HQ400_13420 PF01649 Ribosomal protein S20 HQ400_13425 PF01022 Bacterial regulatory protein, arsR family HQ400_13430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_13430 PF03466 LysR substrate binding domain HQ400_13440 PF06965 Na+/H+ antiporter 1 HQ400_13445 PF00303 Thymidylate synthase HQ400_13450 PF01790 Prolipoprotein diacylglyceryl transferase HQ400_13455 PF01590 GAF domain HQ400_13455 PF05524 PEP-utilising enzyme, N-terminal HQ400_13455 PF00391 PEP-utilising enzyme, mobile domain HQ400_13455 PF02896 PEP-utilising enzyme, TIM barrel domain HQ400_13460 PF00293 NUDIX domain HQ400_13465 PF02976 DNA mismatch repair enzyme MutH HQ400_13475 PF01245 Ribosomal protein L19 HQ400_13480 PF01746 tRNA (Guanine-1)-methyltransferase HQ400_13485 PF05239 PRC-barrel domain HQ400_13485 PF01782 RimM N-terminal domain HQ400_13490 PF00886 Ribosomal protein S16 HQ400_13495 PF00448 SRP54-type protein, GTPase domain HQ400_13495 PF02881 SRP54-type protein, helical bundle domain HQ400_13495 PF02978 Signal peptide binding domain HQ400_13500 PF01578 Cytochrome C assembly protein HQ400_13505 PF00571 CBS domain HQ400_13505 PF03471 Transporter associated domain HQ400_13505 PF01595 Cyclin M transmembrane N-terminal domain HQ400_13510 PF02082 Transcriptional regulator HQ400_13515 PF00970 Oxidoreductase FAD-binding domain HQ400_13515 PF00042 Globin HQ400_13515 PF00175 Oxidoreductase NAD-binding domain HQ400_13520 PF08238 Sel1 repeat HQ400_13525 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain HQ400_13525 PF00056 lactate/malate dehydrogenase, NAD binding domain HQ400_13530 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_13535 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_13540 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_13545 PF00005 ABC transporter HQ400_13550 PF01316 Arginine repressor, DNA binding domain HQ400_13550 PF02863 Arginine repressor, C-terminal domain HQ400_13555 PF04261 Dyp-type peroxidase family HQ400_13560 PF00005 ABC transporter HQ400_13560 PF08402 TOBE domain HQ400_13570 PF13416 Bacterial extracellular solute-binding protein HQ400_13575 PF00543 Nitrogen regulatory protein P-II HQ400_13580 PF00472 RF-1 domain HQ400_13585 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain HQ400_13585 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain HQ400_13595 PF03883 Peroxide stress protein YaaA HQ400_13600 PF00437 Type II/IV secretion system protein HQ400_13605 PF00437 Type II/IV secretion system protein HQ400_13610 PF01168 Alanine racemase, N-terminal domain HQ400_13615 PF03807 NADP oxidoreductase coenzyme F420-dependent HQ400_13615 PF14748 Pyrroline-5-carboxylate reductase dimerisation HQ400_13620 PF02325 YGGT family HQ400_13625 PF02594 Uncharacterised ACR, YggU family COG1872 HQ400_13635 PF01773 Na+ dependent nucleoside transporter N-terminus HQ400_13635 PF07670 Nucleoside recognition HQ400_13635 PF07662 Na+ dependent nucleoside transporter C-terminus HQ400_13640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_13640 PF03466 LysR substrate binding domain HQ400_13645 PF00255 Glutathione peroxidase HQ400_13660 PF02447 GntP family permease HQ400_13670 PF06062 Uncharacterised protein family (UPF0231) HQ400_13690 PF03372 Endonuclease/Exonuclease/phosphatase family HQ400_13700 PF00270 DEAD/DEAH box helicase HQ400_13700 PF00271 Helicase conserved C-terminal domain HQ400_13705 PF08534 Redoxin HQ400_13710 PF00403 Heavy-metal-associated domain HQ400_13720 PF01609 Transposase DDE domain HQ400_13725 PF03714 Bacterial pullanase-associated domain HQ400_13725 PF17967 Pullulanase N2 domain HQ400_13725 PF18494 Pullulanase Ins domain HQ400_13725 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ400_13725 PF11852 Domain of unknown function (DUF3372) HQ400_13740 PF02583 Metal-sensitive transcriptional repressor HQ400_13745 PF00155 Aminotransferase class I and II HQ400_13750 PF03466 LysR substrate binding domain HQ400_13750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_13760 PF04055 Radical SAM superfamily HQ400_13765 PF11230 Protein of unknown function (DUF3029) HQ400_13780 PF00970 Oxidoreductase FAD-binding domain HQ400_13780 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_13780 PF00175 Oxidoreductase NAD-binding domain HQ400_13795 PF00672 HAMP domain HQ400_13795 PF17200 Single Cache domain 2 HQ400_13795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_13800 PF18416 N-acetylglucosamine binding protein domain 2 HQ400_13800 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ400_13805 PF03466 LysR substrate binding domain HQ400_13805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_13810 PF00005 ABC transporter HQ400_13810 PF12857 TOBE-like domain HQ400_13815 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_13820 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_13835 PF13194 Domain of unknown function (DUF4010) HQ400_13840 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_13840 PF12464 Maltose acetyltransferase HQ400_13855 PF13419 Haloacid dehalogenase-like hydrolase HQ400_13860 PF00293 NUDIX domain HQ400_13865 PF00459 Inositol monophosphatase family HQ400_13870 PF03222 Tryptophan/tyrosine permease family HQ400_13875 PF01588 Putative tRNA binding domain HQ400_13880 PF12833 Helix-turn-helix domain HQ400_13880 PF02311 AraC-like ligand binding domain HQ400_13885 PF01340 Met Apo-repressor, MetJ HQ400_13895 PF00742 Homoserine dehydrogenase HQ400_13895 PF00696 Amino acid kinase family HQ400_13895 PF03447 Homoserine dehydrogenase, NAD binding domain HQ400_13900 PF01384 Phosphate transporter family HQ400_13905 PF01865 Protein of unknown function DUF47 HQ400_13910 PF01928 CYTH domain HQ400_13915 PF00701 Dihydrodipicolinate synthetase family HQ400_13925 PF00483 Nucleotidyl transferase HQ400_13930 PF00534 Glycosyl transferases group 1 HQ400_13930 PF08323 Starch synthase catalytic domain HQ400_13970 PF03553 Na+/H+ antiporter family HQ400_13975 PF01521 Iron-sulphur cluster biosynthesis HQ400_13985 PF00654 Voltage gated chloride channel HQ400_13990 PF00202 Aminotransferase class-III HQ400_14055 PF01381 Helix-turn-helix HQ400_14055 PF07883 Cupin domain HQ400_14060 PF03594 Benzoate membrane transport protein HQ400_14070 PF02219 Methylenetetrahydrofolate reductase HQ400_14085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_14085 PF00672 HAMP domain HQ400_14090 PF03922 OmpW family HQ400_14095 PF00990 Diguanylate cyclase, GGDEF domain HQ400_14105 PF00436 Single-strand binding protein family HQ400_14110 PF01609 Transposase DDE domain HQ400_14125 PF00313 'Cold-shock' DNA-binding domain HQ400_14135 PF02733 Dak1 domain HQ400_14140 PF02734 DAK2 domain HQ400_14145 PF03610 PTS system fructose IIA component HQ400_14145 PF05524 PEP-utilising enzyme, N-terminal HQ400_14145 PF00391 PEP-utilising enzyme, mobile domain HQ400_14145 PF00381 PTS HPr component phosphorylation site HQ400_14150 PF00465 Iron-containing alcohol dehydrogenase HQ400_14155 PF02954 Bacterial regulatory protein, Fis family HQ400_14155 PF00989 PAS fold HQ400_14155 PF00158 Sigma-54 interaction domain HQ400_14160 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ400_14170 PF01594 AI-2E family transporter HQ400_14175 PF00293 NUDIX domain HQ400_14185 PF01479 S4 domain HQ400_14195 PF01293 Phosphoenolpyruvate carboxykinase HQ400_14205 PF00557 Metallopeptidase family M24 HQ400_14205 PF01321 Creatinase/Prolidase N-terminal domain HQ400_14210 PF11756 Nitrous oxide-stimulated promoter HQ400_14220 PF00583 Acetyltransferase (GNAT) family HQ400_14225 PF05433 Glycine zipper 2TM domain HQ400_14230 PF00909 Ammonium Transporter Family HQ400_14245 PF06055 Exopolysaccharide synthesis, ExoD HQ400_14255 PF01609 Transposase DDE domain HQ400_14265 PF00990 Diguanylate cyclase, GGDEF domain HQ400_14275 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_14295 PF01609 Transposase DDE domain HQ400_14315 PF06968 Biotin and Thiamin Synthesis associated domain HQ400_14315 PF04055 Radical SAM superfamily HQ400_14320 PF05690 Thiazole biosynthesis protein ThiG HQ400_14330 PF00899 ThiF family HQ400_14335 PF02581 Thiamine monophosphate synthase HQ400_14340 PF13667 ThiC-associated domain HQ400_14340 PF01964 Radical SAM ThiC family HQ400_14345 PF05935 Arylsulfotransferase (ASST) HQ400_14345 PF17425 Arylsulfotransferase Ig-like domain HQ400_14360 PF00486 Transcriptional regulatory protein, C terminal HQ400_14360 PF00072 Response regulator receiver domain HQ400_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_14370 PF08443 RimK-like ATP-grasp domain HQ400_14370 PF18030 RimK PreATP-grasp domain HQ400_14375 PF02574 Homocysteine S-methyltransferase HQ400_14375 PF02310 B12 binding domain HQ400_14375 PF02607 B12 binding domain HQ400_14375 PF02965 Vitamin B12 dependent methionine synthase, activation domain HQ400_14375 PF00809 Pterin binding enzyme HQ400_14380 PF00999 Sodium/hydrogen exchanger family HQ400_14390 PF12833 Helix-turn-helix domain HQ400_14405 PF02056 Family 4 glycosyl hydrolase HQ400_14405 PF11975 Family 4 glycosyl hydrolase C-terminal domain HQ400_14425 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) HQ400_14435 PF07690 Major Facilitator Superfamily HQ400_14440 PF01914 MarC family integral membrane protein HQ400_14450 PF01523 Putative modulator of DNA gyrase HQ400_14455 PF00795 Carbon-nitrogen hydrolase HQ400_14465 PF13116 Protein of unknown function HQ400_14465 PF13502 AsmA-like C-terminal region HQ400_14470 PF10150 Ribonuclease E/G family HQ400_14470 PF00575 S1 RNA binding domain HQ400_14475 PF02545 Maf-like protein HQ400_14480 PF04093 rod shape-determining protein MreD HQ400_14485 PF04085 rod shape-determining protein MreC HQ400_14515 PF14245 Type IV pilin PilA HQ400_14515 PF07963 Prokaryotic N-terminal methylation motif HQ400_14520 PF07963 Prokaryotic N-terminal methylation motif HQ400_14520 PF00114 Pilin (bacterial filament) HQ400_14535 PF00482 Type II secretion system (T2SS), protein F HQ400_14540 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ400_14540 PF00437 Type II/IV secretion system protein HQ400_14555 PF00263 Bacterial type II and III secretion system protein HQ400_14555 PF03958 Bacterial type II/III secretion system short domain HQ400_14585 PF00563 EAL domain HQ400_14585 PF00990 Diguanylate cyclase, GGDEF domain HQ400_14585 PF17157 Gammaproteobacterial periplasmic sensor domain HQ400_14590 PF00563 EAL domain HQ400_14590 PF12792 CSS motif domain associated with EAL HQ400_14600 PF01699 Sodium/calcium exchanger protein HQ400_14605 PF00221 Aromatic amino acid lyase HQ400_14610 PF01175 Urocanase Rossmann-like domain HQ400_14610 PF17391 Urocanase N-terminal domain HQ400_14610 PF17392 Urocanase C-terminal domain HQ400_14615 PF00491 Arginase family HQ400_14625 PF00392 Bacterial regulatory proteins, gntR family HQ400_14625 PF07702 UTRA domain HQ400_14630 PF00484 Carbonic anhydrase HQ400_14635 PF00140 Sigma-70 factor, region 1.2 HQ400_14635 PF04542 Sigma-70 region 2 HQ400_14635 PF04545 Sigma-70, region 4 HQ400_14640 PF18075 FtsX extracellular domain HQ400_14650 PF02881 SRP54-type protein, helical bundle domain HQ400_14650 PF00448 SRP54-type protein, GTPase domain HQ400_14680 PF02525 Flavodoxin-like fold HQ400_14685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_14685 PF03466 LysR substrate binding domain HQ400_14690 PF00106 short chain dehydrogenase HQ400_14705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain HQ400_14705 PF00326 Prolyl oligopeptidase family HQ400_14720 PF13091 PLD-like domain HQ400_14730 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_14730 PF01464 Transglycosylase SLT domain HQ400_14740 PF02416 mttA/Hcf106 family HQ400_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_14745 PF03466 LysR substrate binding domain HQ400_14750 PF01914 MarC family integral membrane protein HQ400_14755 PF10678 Protein of unknown function (DUF2492) HQ400_14760 PF00375 Sodium:dicarboxylate symporter family HQ400_14770 PF03466 LysR substrate binding domain HQ400_14770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_14775 PF13533 Biotin-lipoyl like HQ400_14780 PF07690 Major Facilitator Superfamily HQ400_14785 PF07947 YhhN family HQ400_14800 PF00440 Bacterial regulatory proteins, tetR family HQ400_14840 PF00009 Elongation factor Tu GTP binding domain HQ400_14840 PF03144 Elongation factor Tu domain 2 HQ400_14840 PF03143 Elongation factor Tu C-terminal domain HQ400_14845 PF03144 Elongation factor Tu domain 2 HQ400_14845 PF00009 Elongation factor Tu GTP binding domain HQ400_14845 PF00679 Elongation factor G C-terminus HQ400_14845 PF14492 Elongation Factor G, domain II HQ400_14845 PF03764 Elongation factor G, domain IV HQ400_14850 PF00177 Ribosomal protein S7p/S5e HQ400_14855 PF00164 Ribosomal protein S12/S23 HQ400_14860 PF04077 DsrH like protein HQ400_14865 PF02635 DsrE/DsrF-like family HQ400_14870 PF02635 DsrE/DsrF-like family HQ400_14875 PF01042 Endoribonuclease L-PSP HQ400_14880 PF13309 HTH domain HQ400_14880 PF08348 YheO-like PAS domain HQ400_14885 PF04997 RNA polymerase Rpb1, domain 1 HQ400_14885 PF00623 RNA polymerase Rpb1, domain 2 HQ400_14885 PF04983 RNA polymerase Rpb1, domain 3 HQ400_14885 PF05000 RNA polymerase Rpb1, domain 4 HQ400_14885 PF04998 RNA polymerase Rpb1, domain 5 HQ400_14890 PF10385 RNA polymerase beta subunit external 1 domain HQ400_14890 PF00562 RNA polymerase Rpb2, domain 6 HQ400_14890 PF04565 RNA polymerase Rpb2, domain 3 HQ400_14890 PF04560 RNA polymerase Rpb2, domain 7 HQ400_14890 PF04561 RNA polymerase Rpb2, domain 2 HQ400_14890 PF04563 RNA polymerase beta subunit HQ400_14895 PF00542 Ribosomal protein L7/L12 C-terminal domain HQ400_14895 PF16320 Ribosomal protein L7/L12 dimerisation domain HQ400_14900 PF00466 Ribosomal protein L10 HQ400_14905 PF00687 Ribosomal protein L1p/L10e family HQ400_14910 PF00298 Ribosomal protein L11, RNA binding domain HQ400_14910 PF03946 Ribosomal protein L11, N-terminal domain HQ400_14915 PF00467 KOW motif HQ400_14915 PF02357 Transcription termination factor nusG HQ400_14920 PF00584 SecE/Sec61-gamma subunits of protein translocation complex HQ400_14930 PF03143 Elongation factor Tu C-terminal domain HQ400_14930 PF03144 Elongation factor Tu domain 2 HQ400_14930 PF00009 Elongation factor Tu GTP binding domain HQ400_14955 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain HQ400_14955 PF01565 FAD binding domain HQ400_14960 PF02254 TrkA-N domain HQ400_14960 PF02080 TrkA-C domain HQ400_14965 PF02386 Cation transport protein HQ400_14970 PF01131 DNA topoisomerase HQ400_14970 PF01751 Toprim domain HQ400_14980 PF00512 His Kinase A (phospho-acceptor) domain HQ400_14980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_14980 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_14985 PF03264 NapC/NirT cytochrome c family, N-terminal region HQ400_14990 PF01568 Molydopterin dinucleotide binding domain HQ400_14990 PF18364 Molybdopterin oxidoreductase N-terminal domain HQ400_14990 PF00384 Molybdopterin oxidoreductase HQ400_15005 PF00072 Response regulator receiver domain HQ400_15005 PF00486 Transcriptional regulatory protein, C terminal HQ400_15020 PF01794 Ferric reductase like transmembrane component HQ400_15025 PF00174 Oxidoreductase molybdopterin binding domain HQ400_15030 PF06496 Protein of unknown function (DUF1097) HQ400_15035 PF00072 Response regulator receiver domain HQ400_15035 PF00158 Sigma-54 interaction domain HQ400_15045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_15045 PF00512 His Kinase A (phospho-acceptor) domain HQ400_15065 PF10063 Uncharacterized integral membrane protein (DUF2301) HQ400_15075 PF01037 Lrp/AsnC ligand binding domain HQ400_15080 PF03590 Aspartate-ammonia ligase HQ400_15090 PF10431 C-terminal, D2-small domain, of ClpB protein HQ400_15090 PF02861 Clp amino terminal domain, pathogenicity island component HQ400_15090 PF17871 AAA lid domain HQ400_15090 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_15090 PF07724 AAA domain (Cdc48 subfamily) HQ400_15095 PF02578 Multi-copper polyphenol oxidoreductase laccase HQ400_15100 PF01479 S4 domain HQ400_15100 PF00849 RNA pseudouridylate synthase HQ400_15105 PF13525 Outer membrane lipoprotein HQ400_15125 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain HQ400_15125 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain HQ400_15125 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain HQ400_15130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family HQ400_15135 PF00535 Glycosyl transferase family 2 HQ400_15140 PF01370 NAD dependent epimerase/dehydratase family HQ400_15140 PF02911 Formyl transferase, C-terminal domain HQ400_15140 PF00551 Formyl transferase HQ400_15145 PF01522 Polysaccharide deacetylase HQ400_15155 PF00892 EamA-like transporter family HQ400_15160 PF00893 Small Multidrug Resistance protein HQ400_15170 PF00375 Sodium:dicarboxylate symporter family HQ400_15185 PF02233 NAD(P) transhydrogenase beta subunit HQ400_15190 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch HQ400_15190 PF05222 Alanine dehydrogenase/PNT, N-terminal domain HQ400_15190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain HQ400_15195 PF00465 Iron-containing alcohol dehydrogenase HQ400_15205 PF08212 Lipocalin-like domain HQ400_15220 PF01470 Pyroglutamyl peptidase HQ400_15260 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ400_15260 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ400_15265 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain HQ400_15265 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain HQ400_15270 PF01316 Arginine repressor, DNA binding domain HQ400_15270 PF02863 Arginine repressor, C-terminal domain HQ400_15275 PF03606 C4-dicarboxylate anaerobic carrier HQ400_15320 PF04220 Der GTPase activator (YihI) HQ400_15325 PF00034 Cytochrome c HQ400_15330 PF01926 50S ribosome-binding GTPase HQ400_15345 PF01218 Coproporphyrinogen III oxidase HQ400_15350 PF01300 Telomere recombination HQ400_15355 PF00731 AIR carboxylase HQ400_15360 PF01396 Topoisomerase DNA binding C4 zinc finger HQ400_15365 PF04361 Protein of unknown function (DUF494) HQ400_15370 PF17782 DprA winged helix domain HQ400_15370 PF02481 DNA recombination-mediator protein A HQ400_15375 PF01476 LysM domain HQ400_15380 PF01327 Polypeptide deformylase HQ400_15385 PF00551 Formyl transferase HQ400_15385 PF02911 Formyl transferase, C-terminal domain HQ400_15390 PF01029 NusB family HQ400_15390 PF01189 16S rRNA methyltransferase RsmB/F HQ400_15395 PF02080 TrkA-C domain HQ400_15395 PF02254 TrkA-N domain HQ400_15410 PF01196 Ribosomal protein L17 HQ400_15415 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain HQ400_15415 PF01000 RNA polymerase Rpb3/RpoA insert domain HQ400_15415 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain HQ400_15420 PF00163 Ribosomal protein S4/S9 N-terminal domain HQ400_15420 PF01479 S4 domain HQ400_15425 PF00411 Ribosomal protein S11 HQ400_15430 PF00416 Ribosomal protein S13/S18 HQ400_15435 PF00444 Ribosomal protein L36 HQ400_15440 PF00344 SecY translocase HQ400_15445 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A HQ400_15450 PF00327 Ribosomal protein L30p/L7e HQ400_15455 PF00333 Ribosomal protein S5, N-terminal domain HQ400_15455 PF03719 Ribosomal protein S5, C-terminal domain HQ400_15460 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast HQ400_15465 PF00347 Ribosomal protein L6 HQ400_15470 PF00410 Ribosomal protein S8 HQ400_15475 PF00253 Ribosomal protein S14p/S29e HQ400_15480 PF00673 ribosomal L5P family C-terminus HQ400_15480 PF00281 Ribosomal protein L5 HQ400_15485 PF00467 KOW motif HQ400_15485 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 HQ400_15490 PF00238 Ribosomal protein L14p/L23e HQ400_15495 PF00366 Ribosomal protein S17 HQ400_15500 PF00831 Ribosomal L29 protein HQ400_15505 PF00252 Ribosomal protein L16p/L10e HQ400_15510 PF07650 KH domain HQ400_15510 PF00189 Ribosomal protein S3, C-terminal domain HQ400_15515 PF00237 Ribosomal protein L22p/L17e HQ400_15520 PF00203 Ribosomal protein S19 HQ400_15525 PF00181 Ribosomal Proteins L2, RNA binding domain HQ400_15525 PF03947 Ribosomal Proteins L2, C-terminal domain HQ400_15530 PF00276 Ribosomal protein L23 HQ400_15535 PF00573 Ribosomal protein L4/L1 family HQ400_15540 PF00297 Ribosomal protein L3 HQ400_15545 PF00338 Ribosomal protein S10p/S20e HQ400_15555 PF00512 His Kinase A (phospho-acceptor) domain HQ400_15555 PF00672 HAMP domain HQ400_15555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_15560 PF00072 Response regulator receiver domain HQ400_15560 PF00486 Transcriptional regulatory protein, C terminal HQ400_15565 PF01272 Transcription elongation factor, GreA/GreB, C-term HQ400_15565 PF03449 Transcription elongation factor, N-terminal HQ400_15570 PF17674 HHH domain HQ400_15570 PF00575 S1 RNA binding domain HQ400_15570 PF09371 Tex-like protein N-terminal domain HQ400_15570 PF16921 Tex protein YqgF-like domain HQ400_15590 PF00561 alpha/beta hydrolase fold HQ400_15595 PF00156 Phosphoribosyl transferase domain HQ400_15600 PF01521 Iron-sulphur cluster biosynthesis HQ400_15600 PF01106 NifU-like domain HQ400_15605 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus HQ400_15605 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus HQ400_15610 PF02556 Preprotein translocase subunit SecB HQ400_15615 PF00581 Rhodanese-like domain HQ400_15620 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ400_15620 PF01676 Metalloenzyme superfamily HQ400_15625 PF01551 Peptidase family M23 HQ400_15635 PF00356 Bacterial regulatory proteins, lacI family HQ400_15635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ400_15650 PF01081 KDPG and KHG aldolase HQ400_15655 PF00920 Dehydratase family HQ400_15660 PF01202 Shikimate kinase HQ400_15665 PF02447 GntP family permease HQ400_15670 PF13091 PLD-like domain HQ400_15685 PF00583 Acetyltransferase (GNAT) family HQ400_15685 PF09500 Putative thioesterase (yiiD_Cterm) HQ400_15690 PF17284 Spermidine synthase tetramerisation domain HQ400_15695 PF02580 D-Tyr-tRNA(Tyr) deacylase HQ400_15700 PF03631 Virulence factor BrkB HQ400_15705 PF03949 Malic enzyme, NAD binding domain HQ400_15705 PF00390 Malic enzyme, N-terminal domain HQ400_15715 PF11066 Protein of unknown function (DUF2867) HQ400_15715 PF13460 NAD(P)H-binding HQ400_15725 PF18319 PriA DNA helicase Cys-rich region (CRR) domain HQ400_15725 PF00270 DEAD/DEAH box helicase HQ400_15725 PF00271 Helicase conserved C-terminal domain HQ400_15725 PF17764 3′ DNA-binding domain (3′BD) HQ400_15725 PF18074 Primosomal protein N C-terminal domain HQ400_15730 PF01197 Ribosomal protein L31 HQ400_15735 PF06206 CpeT/CpcT family (DUF1001) HQ400_15740 PF00672 HAMP domain HQ400_15740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_15745 PF03737 Aldolase/RraA HQ400_15750 PF02592 Putative vitamin uptake transporter HQ400_15760 PF02696 Uncharacterized ACR, YdiU/UPF0061 family HQ400_15770 PF00270 DEAD/DEAH box helicase HQ400_15770 PF00271 Helicase conserved C-terminal domain HQ400_15770 PF09382 RQC domain HQ400_15770 PF16124 RecQ zinc-binding HQ400_15770 PF00570 HRDC domain HQ400_15775 PF03061 Thioesterase superfamily HQ400_15790 PF03475 3-alpha domain HQ400_15790 PF03473 MOSC domain HQ400_15795 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_15800 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_15805 PF00005 ABC transporter HQ400_15805 PF08402 TOBE domain HQ400_15810 PF13416 Bacterial extracellular solute-binding protein HQ400_15815 PF13416 Bacterial extracellular solute-binding protein HQ400_15825 PF00120 Glutamine synthetase, catalytic domain HQ400_15830 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ400_15845 PF05981 CreA protein HQ400_15850 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain HQ400_15850 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ400_15855 PF00012 Hsp70 protein HQ400_15870 PF00128 Alpha amylase, catalytic domain HQ400_15870 PF02903 Alpha amylase, N-terminal ig-like domain HQ400_15885 PF05958 tRNA (Uracil-5-)-methyltransferase HQ400_15890 PF02743 Cache domain HQ400_15890 PF00672 HAMP domain HQ400_15890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_15895 PF02653 Branched-chain amino acid transport system / permease component HQ400_15900 PF00005 ABC transporter HQ400_15905 PF13407 Periplasmic binding protein domain HQ400_15915 PF00356 Bacterial regulatory proteins, lacI family HQ400_15920 PF16363 GDP-mannose 4,6 dehydratase HQ400_15925 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain HQ400_15925 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain HQ400_15930 PF10509 Galactokinase galactose-binding signature HQ400_15930 PF08544 GHMP kinases C terminal HQ400_15930 PF00288 GHMP kinases N terminal domain HQ400_15935 PF01263 Aldose 1-epimerase HQ400_15940 PF02673 Bacitracin resistance protein BacA HQ400_15950 PF04542 Sigma-70 region 2 HQ400_15950 PF04545 Sigma-70, region 4 HQ400_15960 PF05746 DALR anticodon binding domain HQ400_15960 PF03485 Arginyl tRNA synthetase N terminal domain HQ400_15960 PF00750 tRNA synthetases class I (R) HQ400_15970 PF00227 Proteasome subunit HQ400_15975 PF00004 ATPase family associated with various cellular activities (AAA) HQ400_15975 PF07724 AAA domain (Cdc48 subfamily) HQ400_15975 PF10431 C-terminal, D2-small domain, of ClpB protein HQ400_15985 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_16005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain HQ400_16005 PF04324 BFD-like [2Fe-2S] binding domain HQ400_16005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain HQ400_16005 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_16005 PF18267 Rubredoxin NAD+ reductase C-terminal domain HQ400_16010 PF13806 Rieske-like [2Fe-2S] domain HQ400_16015 PF01226 Formate/nitrite transporter HQ400_16025 PF03448 MgtE intracellular N domain HQ400_16025 PF01769 Divalent cation transporter HQ400_16025 PF00571 CBS domain HQ400_16030 PF00149 Calcineurin-like phosphoesterase HQ400_16030 PF02872 5'-nucleotidase, C-terminal domain HQ400_16035 PF02653 Branched-chain amino acid transport system / permease component HQ400_16040 PF02653 Branched-chain amino acid transport system / permease component HQ400_16045 PF00005 ABC transporter HQ400_16050 PF02608 ABC transporter substrate-binding protein PnrA-like HQ400_16070 PF00580 UvrD/REP helicase N-terminal domain HQ400_16070 PF13361 UvrD-like helicase C-terminal domain HQ400_16090 PF14001 YdfZ protein HQ400_16115 PF01810 LysE type translocator HQ400_16120 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term HQ400_16120 PF12833 Helix-turn-helix domain HQ400_16145 PF01609 Transposase DDE domain HQ400_16150 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) HQ400_16165 PF13439 Glycosyltransferase Family 4 HQ400_16165 PF00534 Glycosyl transferases group 1 HQ400_16170 PF01370 NAD dependent epimerase/dehydratase family HQ400_16175 PF08360 QacR-like protein, C-terminal region HQ400_16175 PF00440 Bacterial regulatory proteins, tetR family HQ400_16180 PF00155 Aminotransferase class I and II HQ400_16185 PF08240 Alcohol dehydrogenase GroES-like domain HQ400_16185 PF00107 Zinc-binding dehydrogenase HQ400_16190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III HQ400_16195 PF00990 Diguanylate cyclase, GGDEF domain HQ400_16195 PF00563 EAL domain HQ400_16195 PF03707 Bacterial signalling protein N terminal repeat HQ400_16200 PF00580 UvrD/REP helicase N-terminal domain HQ400_16200 PF13361 UvrD-like helicase C-terminal domain HQ400_16205 PF00266 Aminotransferase class-V HQ400_16210 PF02657 Fe-S metabolism associated domain HQ400_16215 PF00899 ThiF family HQ400_16250 PF01177 Asp/Glu/Hydantoin racemase HQ400_16255 PF00593 TonB dependent receptor HQ400_16255 PF07715 TonB-dependent Receptor Plug Domain HQ400_16260 PF03466 LysR substrate binding domain HQ400_16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_16275 PF00731 AIR carboxylase HQ400_16285 PF07690 Major Facilitator Superfamily HQ400_16290 PF04397 LytTr DNA-binding domain HQ400_16290 PF00072 Response regulator receiver domain HQ400_16305 PF00210 Ferritin-like domain HQ400_16310 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase HQ400_16310 PF07055 Enoyl reductase FAD binding domain HQ400_16310 PF12241 Trans-2-enoyl-CoA reductase catalytic region HQ400_16315 PF00582 Universal stress protein family HQ400_16320 PF00579 tRNA synthetases class I (W and Y) HQ400_16325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_16325 PF03466 LysR substrate binding domain HQ400_16345 PF00892 EamA-like transporter family HQ400_16360 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ400_16365 PF00625 Guanylate kinase HQ400_16370 PF01192 RNA polymerase Rpb6 HQ400_16375 PF13291 ACT domain HQ400_16375 PF04607 Region found in RelA / SpoT proteins HQ400_16375 PF02824 TGS domain HQ400_16380 PF12105 SpoU, rRNA methylase, C-terminal HQ400_16380 PF00588 SpoU rRNA Methylase family HQ400_16385 PF12146 Serine aminopeptidase, S33 HQ400_16425 PF00440 Bacterial regulatory proteins, tetR family HQ400_16430 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_16435 PF00873 AcrB/AcrD/AcrF family HQ400_16440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_16440 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_16440 PF00512 His Kinase A (phospho-acceptor) domain HQ400_16445 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_16445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ400_16450 PF03814 Potassium-transporting ATPase A subunit HQ400_16460 PF02669 K+-transporting ATPase, c chain HQ400_16470 PF00072 Response regulator receiver domain HQ400_16470 PF00486 Transcriptional regulatory protein, C terminal HQ400_16475 PF01609 Transposase DDE domain HQ400_16480 PF07690 Major Facilitator Superfamily HQ400_16490 PF00155 Aminotransferase class I and II HQ400_16495 PF00011 Hsp20/alpha crystallin family HQ400_16500 PF00011 Hsp20/alpha crystallin family HQ400_16505 PF12706 Beta-lactamase superfamily domain HQ400_16510 PF12833 Helix-turn-helix domain HQ400_16510 PF01965 DJ-1/PfpI family HQ400_16525 PF01751 Toprim domain HQ400_16525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_16525 PF18053 DNA gyrase B subunit insert domain HQ400_16525 PF00986 DNA gyrase B subunit, carboxyl terminus HQ400_16525 PF00204 DNA gyrase B HQ400_16535 PF02768 DNA polymerase III beta subunit, C-terminal domain HQ400_16535 PF02767 DNA polymerase III beta subunit, central domain HQ400_16535 PF00712 DNA polymerase III beta subunit, N-terminal domain HQ400_16545 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_16550 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_16555 PF00005 ABC transporter HQ400_16560 PF00468 Ribosomal protein L34 HQ400_16565 PF00825 Ribonuclease P HQ400_16570 PF01809 Putative membrane protein insertion efficiency factor HQ400_16575 PF14849 YidC periplasmic domain HQ400_16575 PF02096 60Kd inner membrane protein HQ400_16580 PF01926 50S ribosome-binding GTPase HQ400_16580 PF12631 MnmE helical domain HQ400_16580 PF10396 GTP-binding protein TrmE N-terminus HQ400_16585 PF00258 Flavodoxin HQ400_16590 PF01134 Glucose inhibited division protein A HQ400_16590 PF13932 GidA associated domain HQ400_16595 PF02527 rRNA small subunit methyltransferase G HQ400_16600 PF13614 AAA domain HQ400_16605 PF17762 HTH domain found in ParB protein HQ400_16605 PF02195 ParB-like nuclease domain HQ400_16615 PF00119 ATP synthase A chain HQ400_16620 PF00137 ATP synthase subunit C HQ400_16625 PF00430 ATP synthase B/B' CF(0) HQ400_16630 PF00213 ATP synthase delta (OSCP) subunit HQ400_16635 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ400_16635 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_16635 PF00306 ATP synthase alpha/beta chain, C terminal domain HQ400_16640 PF00231 ATP synthase HQ400_16645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_16645 PF02874 ATP synthase alpha/beta family, beta-barrel domain HQ400_16650 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain HQ400_16650 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain HQ400_16655 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_16655 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_16655 PF12804 MobA-like NTP transferase domain HQ400_16660 PF02397 Bacterial sugar transferase HQ400_16680 PF02706 Chain length determinant protein HQ400_16680 PF13614 AAA domain HQ400_16680 PF13807 G-rich domain on putative tyrosine kinase HQ400_16710 PF13439 Glycosyltransferase Family 4 HQ400_16710 PF00534 Glycosyl transferases group 1 HQ400_16725 PF06123 Inner membrane protein CreD HQ400_16735 PF00905 Penicillin binding protein transpeptidase domain HQ400_16740 PF00672 HAMP domain HQ400_16740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_16740 PF00512 His Kinase A (phospho-acceptor) domain HQ400_16745 PF00072 Response regulator receiver domain HQ400_16745 PF00486 Transcriptional regulatory protein, C terminal HQ400_16750 PF00455 DeoR C terminal sensor domain HQ400_16750 PF08220 DeoR-like helix-turn-helix domain HQ400_16755 PF01380 SIS domain HQ400_16760 PF00196 Bacterial regulatory proteins, luxR family HQ400_16760 PF03472 Autoinducer binding domain HQ400_16770 PF01618 MotA/TolQ/ExbB proton channel family HQ400_16775 PF01618 MotA/TolQ/ExbB proton channel family HQ400_16780 PF02472 Biopolymer transport protein ExbD/TolR HQ400_16785 PF03544 Gram-negative bacterial TonB protein C-terminal HQ400_16820 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin HQ400_16825 PF07969 Amidohydrolase family HQ400_16830 PF01209 ubiE/COQ5 methyltransferase family HQ400_16835 PF02036 SCP-2 sterol transfer family HQ400_16845 PF02416 mttA/Hcf106 family HQ400_16850 PF02416 mttA/Hcf106 family HQ400_16855 PF00902 Sec-independent protein translocase protein (TatC) HQ400_16860 PF01026 TatD related DNase HQ400_16865 PF00490 Delta-aminolevulinic acid dehydratase HQ400_16870 PF18416 N-acetylglucosamine binding protein domain 2 HQ400_16870 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading HQ400_16875 PF00704 Glycosyl hydrolases family 18 HQ400_16880 PF01432 Peptidase family M3 HQ400_16885 PF03707 Bacterial signalling protein N terminal repeat HQ400_16885 PF00563 EAL domain HQ400_16885 PF00990 Diguanylate cyclase, GGDEF domain HQ400_16890 PF00497 Bacterial extracellular solute-binding proteins, family 3 HQ400_16895 PF04445 Putative SAM-dependent methyltransferase HQ400_16905 PF02541 Ppx/GppA phosphatase family HQ400_16910 PF00270 DEAD/DEAH box helicase HQ400_16910 PF00271 Helicase conserved C-terminal domain HQ400_16915 PF00085 Thioredoxin HQ400_16920 PF07497 Rho termination factor, RNA-binding domain HQ400_16920 PF07498 Rho termination factor, N-terminal domain HQ400_16920 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_16930 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase HQ400_16935 PF00175 Oxidoreductase NAD-binding domain HQ400_16945 PF04380 Membrane fusogenic activity HQ400_16950 PF12262 Bacterial virulence factor lipase N-terminal HQ400_16960 PF00581 Rhodanese-like domain HQ400_16965 PF00005 ABC transporter HQ400_16975 PF02653 Branched-chain amino acid transport system / permease component HQ400_16975 PF11862 Domain of unknown function (DUF3382) HQ400_16985 PF13458 Periplasmic binding protein HQ400_16990 PF00356 Bacterial regulatory proteins, lacI family HQ400_17005 PF02743 Cache domain HQ400_17005 PF00672 HAMP domain HQ400_17005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_17010 PF00360 Phytochrome region HQ400_17010 PF00990 Diguanylate cyclase, GGDEF domain HQ400_17010 PF00563 EAL domain HQ400_17010 PF01590 GAF domain HQ400_17015 PF01609 Transposase DDE domain HQ400_17030 PF05746 DALR anticodon binding domain HQ400_17030 PF02092 Glycyl-tRNA synthetase beta subunit HQ400_17035 PF02091 Glycyl-tRNA synthetase alpha subunit HQ400_17040 PF03352 Methyladenine glycosylase HQ400_17055 PF01042 Endoribonuclease L-PSP HQ400_17060 PF01206 Sulfurtransferase TusA HQ400_17070 PF01547 Bacterial extracellular solute-binding protein HQ400_17085 PF00108 Thiolase, N-terminal domain HQ400_17085 PF02803 Thiolase, C-terminal domain HQ400_17095 PF00501 AMP-binding enzyme HQ400_17095 PF13193 AMP-binding enzyme C-terminal domain HQ400_17105 PF09186 Domain of unknown function (DUF1949) HQ400_17105 PF01205 Uncharacterized protein family UPF0029 HQ400_17110 PF02386 Cation transport protein HQ400_17115 PF12724 Flavodoxin domain HQ400_17145 PF00583 Acetyltransferase (GNAT) family HQ400_17145 PF13380 CoA binding domain HQ400_17145 PF13607 Succinyl-CoA ligase like flavodoxin domain HQ400_17160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_17160 PF03466 LysR substrate binding domain HQ400_17165 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain HQ400_17165 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain HQ400_17170 PF00342 Phosphoglucose isomerase HQ400_17175 PF00924 Mechanosensitive ion channel HQ400_17175 PF05552 Conserved TM helix HQ400_17180 PF00440 Bacterial regulatory proteins, tetR family HQ400_17185 PF00692 dUTPase HQ400_17190 PF04127 DNA / pantothenate metabolism flavoprotein HQ400_17190 PF02441 Flavoprotein HQ400_17195 PF04002 RadC-like JAB domain HQ400_17200 PF00830 Ribosomal L28 family HQ400_17205 PF00471 Ribosomal protein L33 HQ400_17215 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain HQ400_17215 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain HQ400_17215 PF06827 Zinc finger found in FPG and IleRS HQ400_17220 PF04393 Protein of unknown function (DUF535) HQ400_17225 PF01467 Cytidylyltransferase-like HQ400_17230 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ400_17235 PF00535 Glycosyl transferase family 2 HQ400_17240 PF01075 Glycosyltransferase family 9 (heptosyltransferase) HQ400_17245 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) HQ400_17250 PF03611 PTS system sugar-specific permease component HQ400_17260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_17265 PF00356 Bacterial regulatory proteins, lacI family HQ400_17265 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family HQ400_17270 PF08240 Alcohol dehydrogenase GroES-like domain HQ400_17270 PF00107 Zinc-binding dehydrogenase HQ400_17285 PF03748 Flagellar basal body-associated protein FliL HQ400_17290 PF04345 Chorismate lyase HQ400_17295 PF01040 UbiA prenyltransferase family HQ400_17300 PF01553 Acyltransferase HQ400_17305 PF01726 LexA DNA binding domain HQ400_17305 PF00717 Peptidase S24-like HQ400_17315 PF02630 SCO1/SenC HQ400_17325 PF00588 SpoU rRNA Methylase family HQ400_17330 PF16527 Two-component sensor protein CpxA, periplasmic domain HQ400_17330 PF00512 His Kinase A (phospho-acceptor) domain HQ400_17330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_17330 PF00672 HAMP domain HQ400_17335 PF00486 Transcriptional regulatory protein, C terminal HQ400_17335 PF00072 Response regulator receiver domain HQ400_17340 PF16916 Dimerisation domain of Zinc Transporter HQ400_17340 PF01545 Cation efflux family HQ400_17345 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_17345 PF06426 Serine acetyltransferase, N-terminal HQ400_17355 PF06005 Cell division protein ZapB HQ400_17365 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ400_17365 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ400_17365 PF00476 DNA polymerase family A HQ400_17365 PF01612 3'-5' exonuclease HQ400_17370 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_17410 PF02836 Glycosyl hydrolases family 2, TIM barrel domain HQ400_17410 PF02929 Beta galactosidase small chain HQ400_17410 PF16353 Domain of unknown function(DUF4981) HQ400_17410 PF00703 Glycosyl hydrolases family 2 HQ400_17410 PF02837 Glycosyl hydrolases family 2, sugar binding domain HQ400_17415 PF04074 YhcH/YjgK/YiaL HQ400_17420 PF13520 Amino acid permease HQ400_17425 PF01588 Putative tRNA binding domain HQ400_17435 PF13593 SBF-like CPA transporter family (DUF4137) HQ400_17440 PF03781 Sulfatase-modifying factor enzyme 1 HQ400_17440 PF12867 DinB superfamily HQ400_17450 PF00756 Putative esterase HQ400_17455 PF00107 Zinc-binding dehydrogenase HQ400_17455 PF08240 Alcohol dehydrogenase GroES-like domain HQ400_17460 PF03466 LysR substrate binding domain HQ400_17460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_17465 PF03755 YicC-like family, N-terminal region HQ400_17465 PF08340 Domain of unknown function (DUF1732) HQ400_17470 PF03725 3' exoribonuclease family, domain 2 HQ400_17470 PF01138 3' exoribonuclease family, domain 1 HQ400_17475 PF00156 Phosphoribosyl transferase domain HQ400_17480 PF00403 Heavy-metal-associated domain HQ400_17485 PF13411 MerR HTH family regulatory protein HQ400_17490 PF00360 Phytochrome region HQ400_17490 PF01590 GAF domain HQ400_17490 PF00563 EAL domain HQ400_17490 PF00990 Diguanylate cyclase, GGDEF domain HQ400_17495 PF06288 Protein of unknown function (DUF1040) HQ400_17500 PF13746 4Fe-4S dicluster domain HQ400_17500 PF12801 4Fe-4S binding domain HQ400_17500 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase HQ400_17510 PF01323 DSBA-like thioredoxin domain HQ400_17520 PF00857 Isochorismatase family HQ400_17530 PF04463 Protein of unknown function (DUF523) HQ400_17535 PF01553 Acyltransferase HQ400_17540 PF01553 Acyltransferase HQ400_17545 PF01078 Magnesium chelatase, subunit ChlI HQ400_17545 PF13335 Magnesium chelatase, subunit ChlI C-terminal HQ400_17550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain HQ400_17550 PF00205 Thiamine pyrophosphate enzyme, central domain HQ400_17550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain HQ400_17560 PF01063 Amino-transferase class IV HQ400_17565 PF00920 Dehydratase family HQ400_17570 PF00291 Pyridoxal-phosphate dependent enzyme HQ400_17570 PF00585 C-terminal regulatory domain of Threonine dehydratase HQ400_17580 PF12102 Domain of unknown function (DUF3578) HQ400_17580 PF07728 AAA domain (dynein-related subfamily) HQ400_17585 PF07728 AAA domain (dynein-related subfamily) HQ400_17585 PF12102 Domain of unknown function (DUF3578) HQ400_17615 PF00691 OmpA family HQ400_17615 PF01389 OmpA-like transmembrane domain HQ400_17625 PF00690 Cation transporter/ATPase, N-terminus HQ400_17625 PF00689 Cation transporting ATPase, C-terminus HQ400_17630 PF04143 Sulphur transport HQ400_17635 PF00892 EamA-like transporter family HQ400_17650 PF01381 Helix-turn-helix HQ400_17650 PF07883 Cupin domain HQ400_17655 PF00202 Aminotransferase class-III HQ400_17660 PF00171 Aldehyde dehydrogenase family HQ400_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_17670 PF03466 LysR substrate binding domain HQ400_17675 PF00294 pfkB family carbohydrate kinase HQ400_17680 PF02082 Transcriptional regulator HQ400_17695 PF02646 RmuC family HQ400_17700 PF00962 Adenosine/AMP deaminase HQ400_17705 PF02954 Bacterial regulatory protein, Fis family HQ400_17705 PF00072 Response regulator receiver domain HQ400_17705 PF00158 Sigma-54 interaction domain HQ400_17710 PF00512 His Kinase A (phospho-acceptor) domain HQ400_17710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_17710 PF00989 PAS fold HQ400_17720 PF00120 Glutamine synthetase, catalytic domain HQ400_17720 PF03951 Glutamine synthetase, beta-Grasp domain HQ400_17725 PF00679 Elongation factor G C-terminus HQ400_17725 PF00009 Elongation factor Tu GTP binding domain HQ400_17725 PF03144 Elongation factor Tu domain 2 HQ400_17735 PF13358 DDE superfamily endonuclease HQ400_17735 PF13592 Winged helix-turn helix HQ400_17765 PF00593 TonB dependent receptor HQ400_17765 PF07715 TonB-dependent Receptor Plug Domain HQ400_17775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_17775 PF00672 HAMP domain HQ400_17775 PF00512 His Kinase A (phospho-acceptor) domain HQ400_17790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_17790 PF00672 HAMP domain HQ400_17790 PF02743 Cache domain HQ400_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_17800 PF03466 LysR substrate binding domain HQ400_17810 PF02678 Pirin HQ400_17810 PF17954 Quercetinase C-terminal cupin domain HQ400_17815 PF07681 DoxX HQ400_17840 PF00990 Diguanylate cyclase, GGDEF domain HQ400_17855 PF03606 C4-dicarboxylate anaerobic carrier HQ400_17880 PF00528 Binding-protein-dependent transport system inner membrane component HQ400_17890 PF00005 ABC transporter HQ400_17890 PF08402 TOBE domain HQ400_17900 PF00990 Diguanylate cyclase, GGDEF domain HQ400_17920 PF01053 Cys/Met metabolism PLP-dependent enzyme HQ400_17930 PF12793 Sugar transport-related sRNA regulator N-term HQ400_17930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle HQ400_17950 PF00561 alpha/beta hydrolase fold HQ400_17955 PF00579 tRNA synthetases class I (W and Y) HQ400_17955 PF01479 S4 domain HQ400_17980 PF13673 Acetyltransferase (GNAT) domain HQ400_17980 PF04229 GrpB protein HQ400_17985 PF00583 Acetyltransferase (GNAT) family HQ400_18005 PF08264 Anticodon-binding domain of tRNA HQ400_18005 PF00133 tRNA synthetases class I (I, L, M and V) HQ400_18005 PF10458 Valyl tRNA synthetase tRNA binding arm HQ400_18010 PF04364 DNA polymerase III chi subunit, HolC HQ400_18015 PF00883 Cytosol aminopeptidase family, catalytic domain HQ400_18015 PF02789 Cytosol aminopeptidase family, N-terminal domain HQ400_18020 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ400_18025 PF03739 Lipopolysaccharide export system permease LptF/LptG HQ400_18040 PF00589 Phage integrase family HQ400_18080 PF01609 Transposase DDE domain HQ400_18110 PF07715 TonB-dependent Receptor Plug Domain HQ400_18110 PF00593 TonB dependent receptor HQ400_18120 PF00768 D-alanyl-D-alanine carboxypeptidase HQ400_18125 PF13520 Amino acid permease HQ400_18155 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded HQ400_18160 PF03692 Putative zinc- or iron-chelating domain HQ400_18170 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase HQ400_18175 PF02602 Uroporphyrinogen-III synthase HemD HQ400_18180 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain HQ400_18180 PF03900 Porphobilinogen deaminase, C-terminal domain HQ400_18190 PF02230 Phospholipase/Carboxylesterase HQ400_18195 PF01491 Frataxin-like domain HQ400_18205 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain HQ400_18205 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain HQ400_18220 PF02899 Phage integrase, N-terminal SAM-like domain HQ400_18220 PF00589 Phage integrase family HQ400_18225 PF13419 Haloacid dehalogenase-like hydrolase HQ400_18230 PF00027 Cyclic nucleotide-binding domain HQ400_18230 PF07885 Ion channel HQ400_18240 PF07722 Peptidase C26 HQ400_18245 PF04751 Protein of unknown function (DUF615) HQ400_18250 PF01523 Putative modulator of DNA gyrase HQ400_18255 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) HQ400_18260 PF01722 BolA-like protein HQ400_18270 PF05494 MlaC protein HQ400_18275 PF02470 MlaD protein HQ400_18280 PF02405 Permease MlaE HQ400_18285 PF00005 ABC transporter HQ400_18290 PF00571 CBS domain HQ400_18290 PF01380 SIS domain HQ400_18305 PF03968 OstA-like protein HQ400_18310 PF00005 ABC transporter HQ400_18310 PF12399 Branched-chain amino acid ATP-binding cassette transporter HQ400_18315 PF04552 Sigma-54, DNA binding domain HQ400_18315 PF00309 Sigma-54 factor, Activator interacting domain (AID) HQ400_18315 PF04963 Sigma-54 factor, core binding domain HQ400_18320 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein HQ400_18325 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_18330 PF03668 P-loop ATPase protein family HQ400_18335 PF00381 PTS HPr component phosphorylation site HQ400_18340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_18340 PF00874 PRD domain HQ400_18340 PF05043 Mga helix-turn-helix domain HQ400_18340 PF08279 HTH domain HQ400_18345 PF07071 KDGP aldolase HQ400_18355 PF01979 Amidohydrolase family HQ400_18385 PF13180 PDZ domain HQ400_18390 PF13180 PDZ domain HQ400_18390 PF00595 PDZ domain HQ400_18400 PF03969 AFG1-like ATPase HQ400_18405 PF00572 Ribosomal protein L13 HQ400_18410 PF00380 Ribosomal protein S9/S16 HQ400_18415 PF00355 Rieske [2Fe-2S] domain HQ400_18415 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal HQ400_18420 PF00032 Cytochrome b(C-terminal)/b6/petD HQ400_18420 PF00033 Cytochrome b/b6/petB HQ400_18425 PF02167 Cytochrome C1 family HQ400_18430 PF02798 Glutathione S-transferase, N-terminal domain HQ400_18430 PF00043 Glutathione S-transferase, C-terminal domain HQ400_18435 PF04386 Stringent starvation protein B HQ400_18445 PF13580 SIS domain HQ400_18450 PF02021 Uncharacterised protein family UPF0102 HQ400_18455 PF04348 LppC putative lipoprotein HQ400_18475 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term HQ400_18480 PF00813 FliP family HQ400_18485 PF01313 Bacterial export proteins, family 3 HQ400_18490 PF01311 Bacterial export proteins, family 1 HQ400_18495 PF01312 FlhB HrpN YscU SpaS Family HQ400_18500 PF00771 FHIPEP family HQ400_18505 PF02954 Bacterial regulatory protein, Fis family HQ400_18505 PF00072 Response regulator receiver domain HQ400_18505 PF00158 Sigma-54 interaction domain HQ400_18510 PF02049 Flagellar hook-basal body complex protein FliE HQ400_18515 PF08345 Flagellar M-ring protein C-terminal HQ400_18515 PF01514 Secretory protein of YscJ/FliF family HQ400_18520 PF14842 FliG N-terminal domain HQ400_18520 PF14841 FliG middle domain HQ400_18520 PF01706 FliG C-terminal domain HQ400_18530 PF18269 T3SS EscN ATPase C-terminal domain HQ400_18530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain HQ400_18545 PF04316 Anti-sigma-28 factor, FlgM HQ400_18555 PF00460 Flagella basal body rod protein HQ400_18560 PF00460 Flagella basal body rod protein HQ400_18560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_18565 PF03963 Flagellar hook capping protein - N-terminal region HQ400_18565 PF13860 FlgD Ig-like domain HQ400_18565 PF13861 FlgD Tudor-like domain HQ400_18570 PF07559 Flagellar basal body protein FlaE HQ400_18570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_18570 PF00460 Flagella basal body rod protein HQ400_18580 PF00460 Flagella basal body rod protein HQ400_18580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_18585 PF02107 Flagellar L-ring protein HQ400_18590 PF02119 Flagellar P-ring protein HQ400_18600 PF00460 Flagella basal body rod protein HQ400_18600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal HQ400_18605 PF00669 Bacterial flagellin N-terminal helical region HQ400_18615 PF00700 Bacterial flagellin C-terminal helical region HQ400_18615 PF00669 Bacterial flagellin N-terminal helical region HQ400_18620 PF00700 Bacterial flagellin C-terminal helical region HQ400_18620 PF00669 Bacterial flagellin N-terminal helical region HQ400_18625 PF02465 Flagellar hook-associated protein 2 N-terminus HQ400_18625 PF07196 Flagellin hook IN motif HQ400_18625 PF07195 Flagellar hook-associated protein 2 C-terminus HQ400_18630 PF02561 Flagellar protein FliS HQ400_18650 PF04542 Sigma-70 region 2 HQ400_18650 PF04545 Sigma-70, region 4 HQ400_18655 PF01618 MotA/TolQ/ExbB proton channel family HQ400_18660 PF13677 Membrane MotB of proton-channel complex MotA/MotB HQ400_18660 PF00691 OmpA family HQ400_18665 PF01476 LysM domain HQ400_18665 PF01464 Transglycosylase SLT domain HQ400_18675 PF02381 MraZ protein, putative antitoxin-like HQ400_18680 PF01795 MraW methylase family HQ400_18685 PF04999 Cell division protein FtsL HQ400_18690 PF00905 Penicillin binding protein transpeptidase domain HQ400_18690 PF03717 Penicillin-binding Protein dimerisation domain HQ400_18695 PF01225 Mur ligase family, catalytic domain HQ400_18695 PF02875 Mur ligase family, glutamate ligase domain HQ400_18695 PF08245 Mur ligase middle domain HQ400_18700 PF01225 Mur ligase family, catalytic domain HQ400_18700 PF02875 Mur ligase family, glutamate ligase domain HQ400_18700 PF08245 Mur ligase middle domain HQ400_18705 PF00953 Glycosyl transferase family 4 HQ400_18705 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 HQ400_18710 PF08245 Mur ligase middle domain HQ400_18710 PF02875 Mur ligase family, glutamate ligase domain HQ400_18715 PF01098 Cell cycle protein HQ400_18720 PF04101 Glycosyltransferase family 28 C-terminal domain HQ400_18720 PF03033 Glycosyltransferase family 28 N-terminal domain HQ400_18725 PF01225 Mur ligase family, catalytic domain HQ400_18725 PF02875 Mur ligase family, glutamate ligase domain HQ400_18725 PF08245 Mur ligase middle domain HQ400_18730 PF03799 Cell division protein FtsQ HQ400_18730 PF08478 POTRA domain, FtsQ-type HQ400_18735 PF02491 SHS2 domain inserted in FTSA HQ400_18740 PF00091 Tubulin/FtsZ family, GTPase domain HQ400_18740 PF12327 FtsZ family, C-terminal domain HQ400_18745 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase HQ400_18755 PF02810 SEC-C motif HQ400_18755 PF07517 SecA DEAD-like domain HQ400_18755 PF01043 SecA preprotein cross-linking domain HQ400_18755 PF07516 SecA Wing and Scaffold domain HQ400_18765 PF03884 DNA gyrase inhibitor YacG HQ400_18770 PF07072 Cell division protein HQ400_18775 PF01121 Dephospho-CoA kinase HQ400_18785 PF00482 Type II secretion system (T2SS), protein F HQ400_18790 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain HQ400_18790 PF00437 Type II/IV secretion system protein HQ400_18800 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain HQ400_18800 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain HQ400_18810 PF01510 N-acetylmuramoyl-L-alanine amidase HQ400_18815 PF07729 FCD domain HQ400_18815 PF00392 Bacterial regulatory proteins, gntR family HQ400_18820 PF17831 Pyruvate dehydrogenase E1 component middle domain HQ400_18820 PF00456 Transketolase, thiamine diphosphate binding domain HQ400_18825 PF00364 Biotin-requiring enzyme HQ400_18825 PF02817 e3 binding domain HQ400_18825 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) HQ400_18830 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain HQ400_18830 PF07992 Pyridine nucleotide-disulphide oxidoreductase HQ400_18840 PF00672 HAMP domain HQ400_18840 PF02743 Cache domain HQ400_18840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_18845 PF01734 Patatin-like phospholipase HQ400_18850 PF00330 Aconitase family (aconitate hydratase) HQ400_18850 PF06434 Aconitate hydratase 2 N-terminus HQ400_18850 PF11791 Aconitate B N-terminal domain HQ400_18855 PF12792 CSS motif domain associated with EAL HQ400_18855 PF00563 EAL domain HQ400_18865 PF02492 CobW/HypB/UreG, nucleotide-binding domain HQ400_18865 PF07683 Cobalamin synthesis protein cobW C-terminal domain HQ400_18870 PF07690 Major Facilitator Superfamily HQ400_18880 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ400_18885 PF02152 Dihydroneopterin aldolase HQ400_18890 PF02660 Glycerol-3-phosphate acyltransferase HQ400_18915 PF07670 Nucleoside recognition HQ400_18930 PF00206 Lyase HQ400_18930 PF14698 Argininosuccinate lyase C-terminal HQ400_18940 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain HQ400_18940 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain HQ400_18945 PF00696 Amino acid kinase family HQ400_18955 PF07687 Peptidase dimerisation domain HQ400_18955 PF01546 Peptidase family M20/M25/M40 HQ400_18960 PF00311 Phosphoenolpyruvate carboxylase HQ400_18970 PF04073 Aminoacyl-tRNA editing domain HQ400_18985 PF03466 LysR substrate binding domain HQ400_18985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_19000 PF00155 Aminotransferase class I and II HQ400_19000 PF00392 Bacterial regulatory proteins, gntR family HQ400_19005 PF03788 LrgA family HQ400_19010 PF04172 LrgB-like family HQ400_19020 PF01734 Patatin-like phospholipase HQ400_19025 PF05192 MutS domain III HQ400_19025 PF00488 MutS domain V HQ400_19025 PF05190 MutS family domain IV HQ400_19025 PF05188 MutS domain II HQ400_19025 PF01624 MutS domain I HQ400_19030 PF00589 Phage integrase family HQ400_19030 PF14659 Phage integrase, N-terminal SAM-like domain HQ400_19030 PF13356 Arm DNA-binding domain HQ400_19035 PF01609 Transposase DDE domain HQ400_19075 PF01609 Transposase DDE domain HQ400_19085 PF13784 Fic/DOC family N-terminal HQ400_19085 PF02661 Fic/DOC family HQ400_19090 PF00817 impB/mucB/samB family HQ400_19090 PF11799 impB/mucB/samB family C-terminal domain HQ400_19090 PF11798 IMS family HHH motif HQ400_19090 PF13438 Domain of unknown function (DUF4113) HQ400_19095 PF00717 Peptidase S24-like HQ400_19135 PF01867 CRISPR associated protein Cas1 HQ400_19140 PF09827 CRISPR associated protein Cas2 HQ400_19190 PF09588 YqaJ-like viral recombinase domain HQ400_19200 PF01609 Transposase DDE domain HQ400_19205 PF02464 Competence-damaged protein HQ400_19210 PF00154 recA bacterial DNA recombination protein HQ400_19215 PF02631 RecX family HQ400_19220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain HQ400_19220 PF01411 tRNA synthetases class II (A) HQ400_19220 PF02272 DHHA1 domain HQ400_19225 PF00696 Amino acid kinase family HQ400_19225 PF01842 ACT domain HQ400_19225 PF13840 ACT domain HQ400_19230 PF02599 Global regulator protein family HQ400_19270 PF00768 D-alanyl-D-alanine carboxypeptidase HQ400_19275 PF09335 SNARE associated Golgi protein HQ400_19280 PF01595 Cyclin M transmembrane N-terminal domain HQ400_19280 PF00571 CBS domain HQ400_19280 PF03471 Transporter associated domain HQ400_19285 PF00710 Asparaginase, N-terminal HQ400_19285 PF17763 Glutaminase/Asparaginase C-terminal domain HQ400_19300 PF00356 Bacterial regulatory proteins, lacI family HQ400_19305 PF00367 phosphotransferase system, EIIB HQ400_19305 PF02378 Phosphotransferase system, EIIC HQ400_19310 PF11941 Domain of unknown function (DUF3459) HQ400_19310 PF00128 Alpha amylase, catalytic domain HQ400_19315 PF14602 Hexapeptide repeat of succinyl-transferase HQ400_19315 PF12464 Maltose acetyltransferase HQ400_19325 PF00849 RNA pseudouridylate synthase HQ400_19330 PF00176 SNF2 family N-terminal domain HQ400_19330 PF12137 RNA polymerase recycling family C-terminal HQ400_19330 PF00271 Helicase conserved C-terminal domain HQ400_19330 PF18339 RapA N-terminal Tudor like domain 1 HQ400_19330 PF18337 RapA N-terminal Tudor like domain HQ400_19360 PF04363 Protein of unknown function (DUF496) HQ400_19385 PF01966 HD domain HQ400_19385 PF00013 KH domain HQ400_19385 PF12072 Domain of unknown function (DUF3552) HQ400_19390 PF04204 Homoserine O-succinyltransferase HQ400_19400 PF01037 Lrp/AsnC ligand binding domain HQ400_19405 PF00884 Sulfatase HQ400_19425 PF02308 MgtC family HQ400_19445 PF00106 short chain dehydrogenase HQ400_19450 PF03577 Peptidase family C69 HQ400_19465 PF02142 MGS-like domain HQ400_19470 PF00210 Ferritin-like domain HQ400_19485 PF08351 Domain of unknown function (DUF1726) HQ400_19485 PF13718 GNAT acetyltransferase 2 HQ400_19485 PF05127 Helicase HQ400_19485 PF17176 tRNA-binding domain HQ400_19495 PF01584 CheW-like domain HQ400_19495 PF00072 Response regulator receiver domain HQ400_19500 PF02698 DUF218 domain HQ400_19505 PF01752 Collagenase HQ400_19505 PF08453 Peptidase family M9 N-terminal HQ400_19510 PF00501 AMP-binding enzyme HQ400_19510 PF13193 AMP-binding enzyme C-terminal domain HQ400_19525 PF12697 Alpha/beta hydrolase family HQ400_19535 PF00425 chorismate binding enzyme HQ400_19540 PF01040 UbiA prenyltransferase family HQ400_19560 PF03880 DbpA RNA binding domain HQ400_19560 PF00270 DEAD/DEAH box helicase HQ400_19560 PF00271 Helicase conserved C-terminal domain HQ400_19570 PF07662 Na+ dependent nucleoside transporter C-terminus HQ400_19570 PF01773 Na+ dependent nucleoside transporter N-terminus HQ400_19570 PF07670 Nucleoside recognition HQ400_19575 PF04307 LexA-binding, inner membrane-associated putative hydrolase HQ400_19590 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 HQ400_19595 PF01544 CorA-like Mg2+ transporter protein HQ400_19620 PF01232 Mannitol dehydrogenase Rossmann domain HQ400_19620 PF08125 Mannitol dehydrogenase C-terminal domain HQ400_19625 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit HQ400_19625 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 HQ400_19625 PF02378 Phosphotransferase system, EIIC HQ400_19630 PF03279 Bacterial lipid A biosynthesis acyltransferase HQ400_19635 PF01467 Cytidylyltransferase-like HQ400_19635 PF00294 pfkB family carbohydrate kinase HQ400_19640 PF02321 Outer membrane efflux protein HQ400_19645 PF00293 NUDIX domain HQ400_19650 PF06853 Protein of unknown function (DUF1249) HQ400_19655 PF00149 Calcineurin-like phosphoesterase HQ400_19660 PF05728 Uncharacterised protein family (UPF0227) HQ400_19670 PF07869 Protein of unknown function (DUF1656) HQ400_19675 PF00529 HlyD membrane-fusion protein of T1SS HQ400_19675 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion HQ400_19680 PF04632 Fusaric acid resistance protein family HQ400_19685 PF00204 DNA gyrase B HQ400_19685 PF00986 DNA gyrase B subunit, carboxyl terminus HQ400_19685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_19685 PF01751 Toprim domain HQ400_19690 PF03989 DNA gyrase C-terminal domain, beta-propeller HQ400_19690 PF00521 DNA gyrase/topoisomerase IV, subunit A HQ400_19705 PF02600 Disulfide bond formation protein DsbB HQ400_19735 PF01556 DnaJ C terminal domain HQ400_19735 PF00684 DnaJ central domain HQ400_19735 PF00226 DnaJ domain HQ400_19755 PF00578 AhpC/TSA family HQ400_19775 PF01553 Acyltransferase HQ400_19780 PF04012 PspA/IM30 family HQ400_19795 PF01541 GIY-YIG catalytic domain HQ400_19805 PF00892 EamA-like transporter family HQ400_19810 PF03167 Uracil DNA glycosylase superfamily HQ400_19815 PF00892 EamA-like transporter family HQ400_19820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_19820 PF03466 LysR substrate binding domain HQ400_19825 PF00950 ABC 3 transport family HQ400_19830 PF00005 ABC transporter HQ400_19835 PF01297 Zinc-uptake complex component A periplasmic HQ400_19855 PF08525 Opacity-associated protein A N-terminal motif HQ400_19855 PF01476 LysM domain HQ400_19855 PF01551 Peptidase family M23 HQ400_19860 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain HQ400_19865 PF04222 Protein of unknown function (DUF416) HQ400_19880 PF02028 BCCT, betaine/carnitine/choline family transporter HQ400_19885 PF01743 Poly A polymerase head domain HQ400_19885 PF01966 HD domain HQ400_19885 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ400_19890 PF10576 Iron-sulfur binding domain of endonuclease III HQ400_19890 PF00633 Helix-hairpin-helix motif HQ400_19890 PF00730 HhH-GPD superfamily base excision DNA repair protein HQ400_19890 PF14815 NUDIX domain HQ400_19895 PF04362 Bacterial Fe(2+) trafficking HQ400_19900 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain HQ400_19900 PF01464 Transglycosylase SLT domain HQ400_19910 PF00657 GDSL-like Lipase/Acylhydrolase HQ400_19915 PF00691 OmpA family HQ400_19915 PF01389 OmpA-like transmembrane domain HQ400_19920 PF00990 Diguanylate cyclase, GGDEF domain HQ400_19925 PF08206 Ribonuclease B OB domain HQ400_19925 PF00773 RNB domain HQ400_19925 PF00575 S1 RNA binding domain HQ400_19925 PF08461 Ribonuclease R winged-helix domain HQ400_19925 PF17876 Cold shock domain HQ400_19930 PF00588 SpoU rRNA Methylase family HQ400_19930 PF08032 RNA 2'-O ribose methyltransferase substrate binding HQ400_19940 PF13673 Acetyltransferase (GNAT) domain HQ400_19945 PF00270 DEAD/DEAH box helicase HQ400_19945 PF00271 Helicase conserved C-terminal domain HQ400_19955 PF05525 Branched-chain amino acid transport protein HQ400_19960 PF05525 Branched-chain amino acid transport protein HQ400_19975 PF01475 Ferric uptake regulator family HQ400_19980 PF01207 Dihydrouridine synthase (Dus) HQ400_20000 PF00132 Bacterial transferase hexapeptide (six repeats) HQ400_20005 PF10952 Protein of unknown function (DUF2753) HQ400_20010 PF00378 Enoyl-CoA hydratase/isomerase HQ400_20025 PF00106 short chain dehydrogenase HQ400_20030 PF03129 Anticodon binding domain HQ400_20030 PF04073 Aminoacyl-tRNA editing domain HQ400_20030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) HQ400_20035 PF05958 tRNA (Uracil-5-)-methyltransferase HQ400_20035 PF01938 TRAM domain HQ400_20040 PF03886 ABC-type transport auxiliary lipoprotein component HQ400_20050 PF04403 Paraquat-inducible protein A HQ400_20055 PF17209 Hfq protein HQ400_20070 PF00990 Diguanylate cyclase, GGDEF domain HQ400_20070 PF00360 Phytochrome region HQ400_20070 PF00563 EAL domain HQ400_20070 PF01590 GAF domain HQ400_20075 PF08206 Ribonuclease B OB domain HQ400_20075 PF17876 Cold shock domain HQ400_20075 PF00773 RNB domain HQ400_20080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_20080 PF03466 LysR substrate binding domain HQ400_20085 PF00765 Autoinducer synthase HQ400_20090 PF00196 Bacterial regulatory proteins, luxR family HQ400_20090 PF03472 Autoinducer binding domain HQ400_20095 PF01810 LysE type translocator HQ400_20100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_20100 PF12729 Four helix bundle sensory module for signal transduction HQ400_20100 PF00672 HAMP domain HQ400_20105 PF07499 RuvA, C-terminal domain HQ400_20105 PF01330 RuvA N terminal domain HQ400_20110 PF17864 RuvB AAA lid domain HQ400_20110 PF05491 RuvB C-terminal winged helix domain HQ400_20110 PF05496 Holliday junction DNA helicase RuvB P-loop domain HQ400_20115 PF01654 Cytochrome bd terminal oxidase subunit I HQ400_20120 PF02322 Cytochrome bd terminal oxidase subunit II HQ400_20125 PF08173 Membrane bound YbgT-like protein HQ400_20130 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) HQ400_20135 PF03061 Thioesterase superfamily HQ400_20140 PF01618 MotA/TolQ/ExbB proton channel family HQ400_20145 PF02472 Biopolymer transport protein ExbD/TolR HQ400_20155 PF04052 TolB amino-terminal domain HQ400_20155 PF07676 WD40-like Beta Propeller Repeat HQ400_20160 PF00691 OmpA family HQ400_20165 PF13174 Tetratricopeptide repeat HQ400_20165 PF16331 TolA binding protein trimerisation HQ400_20230 PF00209 Sodium:neurotransmitter symporter family HQ400_20240 PF00209 Sodium:neurotransmitter symporter family HQ400_20260 PF07690 Major Facilitator Superfamily HQ400_20270 PF01037 Lrp/AsnC ligand binding domain HQ400_20280 PF00293 NUDIX domain HQ400_20290 PF01641 SelR domain HQ400_20295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ400_20295 PF00128 Alpha amylase, catalytic domain HQ400_20300 PF00128 Alpha amylase, catalytic domain HQ400_20300 PF02806 Alpha amylase, C-terminal all-beta domain HQ400_20300 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) HQ400_20310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ400_20310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ400_20315 PF01263 Aldose 1-epimerase HQ400_20320 PF02445 Quinolinate synthetase A protein HQ400_20325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_20325 PF00672 HAMP domain HQ400_20330 PF01957 NfeD-like C-terminal, partner-binding HQ400_20335 PF01145 SPFH domain / Band 7 family HQ400_20335 PF16200 C-terminal region of band_7 HQ400_20340 PF10414 Sirohaem synthase dimerisation region HQ400_20340 PF14824 Sirohaem biosynthesis protein central HQ400_20340 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases HQ400_20345 PF01507 Phosphoadenosine phosphosulfate reductase family HQ400_20350 PF00009 Elongation factor Tu GTP binding domain HQ400_20360 PF01609 Transposase DDE domain HQ400_20375 PF08447 PAS fold HQ400_20375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_20395 PF00005 ABC transporter HQ400_20410 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) HQ400_20425 PF00719 Inorganic pyrophosphatase HQ400_20430 PF11849 Domain of unknown function (DUF3369) HQ400_20440 PF00893 Small Multidrug Resistance protein HQ400_20445 PF00893 Small Multidrug Resistance protein HQ400_20450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily HQ400_20455 PF00912 Transglycosylase HQ400_20455 PF00905 Penicillin binding protein transpeptidase domain HQ400_20455 PF14814 Bifunctional transglycosylase second domain HQ400_20460 PF00270 DEAD/DEAH box helicase HQ400_20460 PF00271 Helicase conserved C-terminal domain HQ400_20460 PF08482 ATP-dependent helicase C-terminal HQ400_20460 PF04408 Helicase associated domain (HA2) HQ400_20470 PF03749 Sugar fermentation stimulation protein RE domain HQ400_20470 PF17746 SfsA N-terminal OB domain HQ400_20475 PF01258 Prokaryotic dksA/traR C4-type zinc finger HQ400_20480 PF00749 tRNA synthetases class I (E and Q), catalytic domain HQ400_20485 PF12627 Probable RNA and SrmB- binding site of polymerase A HQ400_20485 PF12626 Polymerase A arginine-rich C-terminus HQ400_20485 PF01743 Poly A polymerase head domain HQ400_20490 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) HQ400_20495 PF02548 Ketopantoate hydroxymethyltransferase HQ400_20500 PF02569 Pantoate-beta-alanine ligase HQ400_20530 PF01869 BadF/BadG/BcrA/BcrD ATPase family HQ400_20540 PF01061 ABC-2 type transporter HQ400_20545 PF00005 ABC transporter HQ400_20550 PF00156 Phosphoribosyl transferase domain HQ400_20555 PF00440 Bacterial regulatory proteins, tetR family HQ400_20560 PF02441 Flavoprotein HQ400_20565 PF02875 Mur ligase family, glutamate ligase domain HQ400_20565 PF08245 Mur ligase middle domain HQ400_20565 PF01225 Mur ligase family, catalytic domain HQ400_20570 PF01569 PAP2 superfamily HQ400_20575 PF16363 GDP-mannose 4,6 dehydratase HQ400_20580 PF00175 Oxidoreductase NAD-binding domain HQ400_20580 PF00111 2Fe-2S iron-sulfur cluster binding domain HQ400_20580 PF00970 Oxidoreductase FAD-binding domain HQ400_20585 PF03063 Prismane/CO dehydrogenase family HQ400_20590 PF00210 Ferritin-like domain HQ400_20595 PF01510 N-acetylmuramoyl-L-alanine amidase HQ400_20600 PF07308 Protein of unknown function (DUF1456) HQ400_20605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) HQ400_20605 PF00072 Response regulator receiver domain HQ400_20605 PF01627 Hpt domain HQ400_20605 PF00512 His Kinase A (phospho-acceptor) domain HQ400_20605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_20605 PF00672 HAMP domain HQ400_20610 PF05958 tRNA (Uracil-5-)-methyltransferase HQ400_20610 PF01938 TRAM domain HQ400_20615 PF02824 TGS domain HQ400_20615 PF04607 Region found in RelA / SpoT proteins HQ400_20615 PF13291 ACT domain HQ400_20620 PF03819 MazG nucleotide pyrophosphohydrolase domain HQ400_20625 PF00117 Glutamine amidotransferase class-I HQ400_20625 PF06418 CTP synthase N-terminus HQ400_20630 PF03952 Enolase, N-terminal domain HQ400_20630 PF00113 Enolase, C-terminal TIM barrel domain HQ400_20640 PF01676 Metalloenzyme superfamily HQ400_20640 PF06415 BPG-independent PGAM N-terminus (iPGM_N) HQ400_20660 PF13411 MerR HTH family regulatory protein HQ400_20680 PF03466 LysR substrate binding domain HQ400_20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_20685 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ HQ400_20695 PF00005 ABC transporter HQ400_20695 PF12848 ABC transporter HQ400_20715 PF00392 Bacterial regulatory proteins, gntR family HQ400_20715 PF00155 Aminotransferase class I and II HQ400_20725 PF01810 LysE type translocator HQ400_20730 PF01177 Asp/Glu/Hydantoin racemase HQ400_20740 PF04074 YhcH/YjgK/YiaL HQ400_20745 PF00871 Acetokinase family HQ400_20750 PF00924 Mechanosensitive ion channel HQ400_20755 PF03734 L,D-transpeptidase catalytic domain HQ400_20755 PF17969 L,D-transpeptidase C-terminal domain HQ400_20765 PF00474 Sodium:solute symporter family HQ400_20770 PF04977 Septum formation initiator HQ400_20775 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase HQ400_20780 PF02542 YgbB family HQ400_20785 PF01142 tRNA pseudouridine synthase D (TruD) HQ400_20790 PF01975 Survival protein SurE HQ400_20800 PF09335 SNARE associated Golgi protein HQ400_20805 PF01476 LysM domain HQ400_20805 PF01551 Peptidase family M23 HQ400_20810 PF04542 Sigma-70 region 2 HQ400_20810 PF04539 Sigma-70 region 3 HQ400_20810 PF04545 Sigma-70, region 4 HQ400_20810 PF00140 Sigma-70 factor, region 1.2 HQ400_20815 PF00724 NADH:flavin oxidoreductase / NADH oxidase family HQ400_20825 PF03466 LysR substrate binding domain HQ400_20825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family HQ400_20830 PF04371 Porphyromonas-type peptidyl-arginine deiminase HQ400_20855 PF00939 Sodium:sulfate symporter transmembrane region HQ400_20875 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase HQ400_20880 PF03150 Di-haem cytochrome c peroxidase HQ400_20890 PF00445 Ribonuclease T2 family HQ400_20920 PF00293 NUDIX domain HQ400_20920 PF09297 NADH pyrophosphatase zinc ribbon domain HQ400_20920 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain HQ400_20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase HQ400_20930 PF00512 His Kinase A (phospho-acceptor) domain HQ400_20935 PF00072 Response regulator receiver domain HQ400_20935 PF00486 Transcriptional regulatory protein, C terminal HQ400_20955 PF08335 GlnD PII-uridylyltransferase HQ400_20955 PF03710 Glutamate-ammonia ligase adenylyltransferase HQ400_20960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain HQ400_20960 PF02743 Cache domain HQ400_20960 PF00672 HAMP domain HQ400_20970 PF08239 Bacterial SH3 domain HQ400_20975 PF18327 Proline utilization A proline dehydrogenase N-terminal domain HQ400_20975 PF00171 Aldehyde dehydrogenase family HQ400_20975 PF01619 Proline dehydrogenase HQ400_20975 PF14850 DNA-binding domain of Proline dehydrogenase HQ400_20985 PF01208 Uroporphyrinogen decarboxylase (URO-D) HQ400_20990 PF00480 ROK family HQ400_20995 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HQ400_20995 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain HQ400_21000 PF00162 Phosphoglycerate kinase HQ400_21005 PF01116 Fructose-bisphosphate aldolase class-II HQ400_21010 PF01266 FAD dependent oxidoreductase HQ400_21035 PF03091 CutA1 divalent ion tolerance protein HQ400_21055 PF01571 Aminomethyltransferase folate-binding domain HQ400_21060 PF03937 Flavinator of succinate dehydrogenase HQ400_21070 PF00890 FAD binding domain HQ400_21070 PF02910 Fumarate reductase flavoprotein C-term HQ400_21075 PF04542 Sigma-70 region 2 HQ400_21075 PF08281 Sigma-70, region 4 HQ400_21080 PF03873 Anti sigma-E protein RseA, C-terminal domain HQ400_21080 PF03872 Anti sigma-E protein RseA, N-terminal domain HQ400_21085 PF03888 MucB/RseB N-terminal domain HQ400_21085 PF17188 MucB/RseB C-terminal domain HQ400_21095 PF03144 Elongation factor Tu domain 2 HQ400_21095 PF06421 GTP-binding protein LepA C-terminus HQ400_21095 PF00679 Elongation factor G C-terminus HQ400_21095 PF00009 Elongation factor Tu GTP binding domain HQ400_21100 PF10502 Signal peptidase, peptidase S26 HQ400_21105 PF14622 Ribonuclease-III-like HQ400_21105 PF00035 Double-stranded RNA binding motif HQ400_21110 PF01926 50S ribosome-binding GTPase HQ400_21110 PF07650 KH domain HQ400_21115 PF02565 Recombination protein O C terminal HQ400_21115 PF11967 Recombination protein O N terminal HQ400_21120 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ HQ400_21125 PF01116 Fructose-bisphosphate aldolase class-II HQ400_21130 PF01979 Amidohydrolase family HQ400_21135 PF03610 PTS system fructose IIA component HQ400_21140 PF03613 PTS system mannose/fructose/sorbose family IID component HQ400_21145 PF03609 PTS system sorbose-specific iic component HQ400_21150 PF03830 PTS system sorbose subfamily IIB component HQ400_21160 PF08013 Tagatose 6 phosphate kinase HQ400_21165 PF00455 DeoR C terminal sensor domain HQ400_21165 PF08220 DeoR-like helix-turn-helix domain HQ400_21180 PF04279 Intracellular septation protein A HQ400_21185 PF00282 Pyridoxal-dependent decarboxylase conserved domain HQ400_21225 PF09383 NIL domain HQ400_21225 PF00005 ABC transporter HQ400_21245 PF00271 Helicase conserved C-terminal domain HQ400_21245 PF04851 Type III restriction enzyme, res subunit HQ400_21245 PF02151 UvrB/uvrC motif HQ400_21245 PF12344 Ultra-violet resistance protein B HQ400_21245 PF17757 UvrB interaction domain HQ400_21280 PF01609 Transposase DDE domain HQ400_21290 PF01609 Transposase DDE domain HQ400_21300 PF00154 recA bacterial DNA recombination protein HQ400_21300 PF03161 LAGLIDADG DNA endonuclease family HQ400_21320 PF00216 Bacterial DNA-binding protein HQ400_21410 PF07804 HipA-like C-terminal domain HQ400_21435 PF13476 AAA domain HQ400_21455 PF03477 ATP cone domain HQ400_21455 PF02867 Ribonucleotide reductase, barrel domain HQ400_21455 PF00317 Ribonucleotide reductase, all-alpha domain HQ400_21465 PF03477 ATP cone domain HQ400_21465 PF13597 Anaerobic ribonucleoside-triphosphate reductase HQ400_21475 PF00303 Thymidylate synthase HQ400_21480 PF00186 Dihydrofolate reductase HQ400_21505 PF00929 Exonuclease HQ400_21525 PF09722 Protein of unknown function (DUF2384) HQ400_21530 PF01051 Initiator Replication protein HQ400_21595 PF00589 Phage integrase family HQ400_21595 PF02899 Phage integrase, N-terminal SAM-like domain HQ400_21605 PF01609 Transposase DDE domain HQ400_21615 PF01609 Transposase DDE domain HQ400_21620 PF00154 recA bacterial DNA recombination protein HQ400_21620 PF03161 LAGLIDADG DNA endonuclease family HQ400_21630 PF00476 DNA polymerase family A HQ400_21630 PF01367 5'-3' exonuclease, C-terminal SAM fold HQ400_21630 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain HQ400_21640 PF01609 Transposase DDE domain HQ400_21670 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ400_21670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ400_21670 PF14579 Helix-hairpin-helix motif HQ400_21670 PF02811 PHP domain HQ400_21680 PF07733 Bacterial DNA polymerase III alpha NTPase domain HQ400_21680 PF17657 Bacterial DNA polymerase III alpha subunit finger domain HQ400_21680 PF14579 Helix-hairpin-helix motif HQ400_21680 PF02811 PHP domain HQ400_21695 PF06213 Cobalamin biosynthesis protein CobT HQ400_21695 PF11775 Cobalamin biosynthesis protein CobT VWA domain HQ400_21715 PF13614 AAA domain HQ400_21755 PF10410 DnaB-helicase binding domain of primase HQ400_21755 PF08278 DNA primase DnaG DnaB-binding HQ400_21755 PF08275 DNA primase catalytic core, N-terminal domain HQ400_21755 PF01807 CHC2 zinc finger HQ400_21775 PF17209 Hfq protein HQ400_21800 PF03335 Phage tail fibre repeat HQ400_21800 PF07484 Phage Tail Collar Domain HQ400_21800 PF08400 Prophage tail fibre N-terminal