locus-tag	class	description
JUNP479_0002	COG4695	Portal protein
JUNP479_0005	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JUNP479_0019	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JUNP479_0022	COG4974	Belongs to the 'phage' integrase family
JUNP479_0028	COG0642	Histidine kinase
JUNP479_0029	COG2261	transglycosylase associated protein
JUNP479_0031	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JUNP479_0032	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JUNP479_0033	COG0215	cysteine-tRNA ligase activity
JUNP479_0044	COG2119	membrane
JUNP479_0045	COG0023	Translation Initiation Factor
JUNP479_0047	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JUNP479_0050	COG0513	Belongs to the DEAD box helicase family
JUNP479_0053	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_0054	COG0765	amino acid transport
JUNP479_0055	COG1126	abc transporter atp-binding protein
JUNP479_0056	COG0493	'glutamate synthase
JUNP479_0057	COG0067	glutamate synthase
JUNP479_0057	COG0069	glutamate synthase activity
JUNP479_0057	COG0070	glutamate synthase
JUNP479_0058	COG1242	4 iron, 4 sulfur cluster binding
JUNP479_0067	COG3634	alkyl hydroperoxide reductase activity
JUNP479_0069	COG0517	IMP dehydrogenase activity
JUNP479_0069	COG1125	glycine betaine transport
JUNP479_0070	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JUNP479_0071	COG0343	queuine tRNA-ribosyltransferase activity
JUNP479_0072	COG1862	Preprotein translocase
JUNP479_0073	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JUNP479_0074	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JUNP479_0077	COG0826	peptidase U32
JUNP479_0078	COG0826	peptidase U32
JUNP479_0079	COG3154	lipid carrier protein
JUNP479_0082	COG1959	2 iron, 2 sulfur cluster binding
JUNP479_0083	COG1104	cysteine desulfurase activity
JUNP479_0084	COG0822	iron-sulfur transferase activity
JUNP479_0086	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JUNP479_0087	COG0443	Heat shock 70 kDa protein
JUNP479_0088	COG0633	Ferredoxin
JUNP479_0090	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JUNP479_0091	COG0105	UTP biosynthetic process
JUNP479_0092	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JUNP479_0096	COG0124	histidyl-tRNA synthetase
JUNP479_0097	COG2976	Protein conserved in bacteria
JUNP479_0098	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JUNP479_0099	COG1160	GTP binding
JUNP479_0100	COG1645	bacterial-type flagellum-dependent swarming motility
JUNP479_0101	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JUNP479_0102	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JUNP479_0102	COG0047	phosphoribosylformylglycinamidine synthase activity
JUNP479_0103	COG1007	ATP synthesis coupled electron transport
JUNP479_0104	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0106	COG0713	ATP synthesis coupled electron transport
JUNP479_0107	COG0839	Belongs to the complex I subunit 6 family
JUNP479_0108	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0109	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JUNP479_0110	COG1034	ATP synthesis coupled electron transport
JUNP479_0113	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0113	COG0649	NAD binding
JUNP479_0114	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0115	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0116	COG1360	Flagellar Motor Protein
JUNP479_0117	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JUNP479_0120	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JUNP479_0122	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
JUNP479_0123	COG4597	amino acid ABC transporter
JUNP479_0124	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_0125	COG0765	amino acid transport
JUNP479_0126	COG1126	abc transporter atp-binding protein
JUNP479_0128	COG0724	RNA recognition motif
JUNP479_0129	COG4989	oxidoreductase activity
JUNP479_0134	COG3437	response regulator, receiver
JUNP479_0135	COG0583	DNA-binding transcription factor activity
JUNP479_0136	COG3300	MHYT domain
JUNP479_0136	COG5001	Diguanylate cyclase
JUNP479_0137	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JUNP479_0141	COG2814	Major facilitator Superfamily
JUNP479_0143	COG0583	DNA-binding transcription factor activity
JUNP479_0144	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JUNP479_0145	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JUNP479_0146	COG0539	negative regulation of cytoplasmic translation
JUNP479_0147	COG0776	regulation of translation
JUNP479_0149	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JUNP479_0153	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JUNP479_0154	COG0602	queuosine metabolic process
JUNP479_0155	COG3530	Putative quorum-sensing-regulated virulence factor
JUNP479_0156	COG2096	Adenosyltransferase
JUNP479_0157	COG2916	Histone family protein nucleoid-structuring protein H-NS
JUNP479_0158	COG1757	Na H antiporter
JUNP479_0159	COG1435	thymidine kinase activity
JUNP479_0165	COG3501	Rhs element vgr protein
JUNP479_0177	COG3829	transcription factor binding
JUNP479_0184	COG4104	PAAR repeat-containing protein
JUNP479_0188	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JUNP479_0189	COG0326	Molecular chaperone. Has ATPase activity
JUNP479_0190	COG4172	Belongs to the ABC transporter superfamily
JUNP479_0195	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JUNP479_0196	COG1842	Phage shock protein A
JUNP479_0199	COG3106	COG3106 Predicted ATPase
JUNP479_0200	COG3768	UPF0283 membrane protein
JUNP479_0202	COG2154	pterin-4-alpha-carbinolamine dehydratase
JUNP479_0205	COG2199	diguanylate cyclase activity
JUNP479_0206	COG2885	chlorophyll binding
JUNP479_0207	COG0861	Integral membrane protein TerC family
JUNP479_0210	COG1022	Amp-dependent synthetase and ligase
JUNP479_0213	COG2910	NAD(P)H-binding
JUNP479_0214	COG0583	DNA-binding transcription factor activity
JUNP479_0217	COG1335	isochorismatase
JUNP479_0219	COG0583	DNA-binding transcription factor activity
JUNP479_0220	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JUNP479_0224	COG0583	DNA-binding transcription factor activity
JUNP479_0225	COG2723	6-phospho-beta-galactosidase activity
JUNP479_0226	COG1944	ATP diphosphatase activity
JUNP479_0228	COG2116	formate transmembrane transporter activity
JUNP479_0229	COG1882	Formate acetyltransferase
JUNP479_0231	COG2983	Belongs to the UPF0260 family
JUNP479_0234	COG0058	SHG alpha-glucan phosphorylase activity
JUNP479_0235	COG0471	metal ion transport
JUNP479_0236	COG3118	belongs to the thioredoxin family
JUNP479_0237	COG3850	Histidine kinase
JUNP479_0237	COG2205	protein histidine kinase activity
JUNP479_0237	COG3437	response regulator, receiver
JUNP479_0237	COG4999	Histidine kinase
JUNP479_0238	COG1132	(ABC) transporter
JUNP479_0239	COG1132	(ABC) transporter
JUNP479_0241	COG2501	S4 domain
JUNP479_0244	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JUNP479_0255	COG2009	succinate dehydrogenase
JUNP479_0256	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JUNP479_0257	COG1053	succinate dehydrogenase
JUNP479_0259	COG0567	Dehydrogenase, E1 component
JUNP479_0260	COG0508	dehydrogenase complex catalyzes the overall conversion of
JUNP479_0261	COG0045	succinate-CoA ligase (ADP-forming) activity
JUNP479_0267	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_0269	COG3842	ATPase activity
JUNP479_0271	COG1840	ABC-type Fe3 transport system, periplasmic component
JUNP479_0273	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JUNP479_0274	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JUNP479_0275	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JUNP479_0276	COG4235	cytochrome complex assembly
JUNP479_0276	COG3088	subunit of a heme lyase
JUNP479_0278	COG1138	Cytochrome C-type biogenesis protein
JUNP479_0279	COG3301	Polysulphide reductase, NrfD
JUNP479_0280	COG0437	4 iron, 4 sulfur cluster binding
JUNP479_0281	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JUNP479_0285	COG0247	lactate metabolic process
JUNP479_0286	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
JUNP479_0287	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JUNP479_0289	COG3012	SEC-C Motif Domain Protein
JUNP479_0290	COG0840	transmembrane signaling receptor activity
JUNP479_0291	COG1940	carbohydrate kinase activity
JUNP479_0291	COG1846	Transcriptional regulator
JUNP479_0292	COG3148	PFAM DTW domain containing protein
JUNP479_0293	COG0730	response to heat
JUNP479_0294	COG0583	DNA-binding transcription factor activity
JUNP479_0298	COG3593	DNA synthesis involved in DNA repair
JUNP479_0308	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JUNP479_0309	COG1011	Hydrolase
JUNP479_0312	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JUNP479_0313	COG2832	Protein of unknown function (DUF454)
JUNP479_0314	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JUNP479_0316	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JUNP479_0321	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JUNP479_0322	COG0583	DNA-binding transcription factor activity
JUNP479_0324	COG1560	Kdo2-lipid A biosynthetic process
JUNP479_0325	COG1560	Kdo2-lipid A biosynthetic process
JUNP479_0329	COG0417	DNA replication proofreading
JUNP479_0332	COG1451	nucleotide metabolic process
JUNP479_0335	COG3069	C4-dicarboxylate transmembrane transporter activity
JUNP479_0338	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JUNP479_0338	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_0339	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JUNP479_0340	COG0569	domain protein
JUNP479_0340	COG2985	domain, Protein
JUNP479_0342	COG0556	nucleotide-excision repair
JUNP479_0344	COG0586	Pfam SNARE associated Golgi protein
JUNP479_0345	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JUNP479_0346	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JUNP479_0351	COG3829	transcription factor binding
JUNP479_0357	COG0534	Mate efflux family protein
JUNP479_0360	COG0307	riboflavin synthase, alpha
JUNP479_0363	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JUNP479_0364	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JUNP479_0365	COG0697	spore germination
JUNP479_0366	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JUNP479_0374	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JUNP479_0375	COG3099	Belongs to the UPF0263 family
JUNP479_0376	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JUNP479_0377	COG2894	cell division
JUNP479_0378	COG0850	regulation of cytokinetic process
JUNP479_0379	COG0850	regulation of cytokinetic process
JUNP479_0380	COG3100	YcgL domain-containing protein
JUNP479_0381	COG2824	Alkylphosphonate utilization operon protein PhnA
JUNP479_0384	COG3791	Glutathione-dependent formaldehyde-activating
JUNP479_0388	COG3706	GGDEF domain
JUNP479_0389	COG2840	Smr protein MutS2
JUNP479_0390	COG2890	protein-(glutamine-N5) methyltransferase activity
JUNP479_0391	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JUNP479_0393	COG0513	Belongs to the DEAD box helicase family
JUNP479_0394	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JUNP479_0397	COG0814	amino acid
JUNP479_0398	COG1609	Transcriptional regulator
JUNP479_0399	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_0399	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_0400	COG1105	Belongs to the carbohydrate kinase PfkB family
JUNP479_0401	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_0401	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_0401	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JUNP479_0402	COG2140	Oxalate decarboxylase
JUNP479_0403	COG1609	Transcriptional regulator
JUNP479_0406	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_0406	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_0407	COG3715	PTS system
JUNP479_0408	COG3716	PTS system mannose fructose sorbose family IID component
JUNP479_0409	COG2942	2-epimerase
JUNP479_0410	COG3313	Fe-S protein
JUNP479_0411	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JUNP479_0412	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JUNP479_0413	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JUNP479_0414	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JUNP479_0416	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JUNP479_0418	COG0366	Alpha amylase catalytic
JUNP479_0422	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JUNP479_0423	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JUNP479_0424	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JUNP479_0425	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JUNP479_0427	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JUNP479_0428	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JUNP479_0429	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JUNP479_0429	COG0072	phenylalanine-tRNA ligase activity
JUNP479_0430	COG0776	regulation of translation
JUNP479_0431	COG2205	protein histidine kinase activity
JUNP479_0431	COG0784	Response regulator, receiver
JUNP479_0435	COG1609	Transcriptional regulator
JUNP479_0436	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JUNP479_0437	COG1879	ABC-type sugar transport system periplasmic component
JUNP479_0438	COG1172	Belongs to the binding-protein-dependent transport system permease family
JUNP479_0439	COG1129	ABC transporter
JUNP479_0440	COG1869	D-ribose catabolic process
JUNP479_0441	COG0625	glutathione transferase activity
JUNP479_0444	COG1177	transmembrane transport
JUNP479_0449	COG0037	tRNA processing
JUNP479_0450	COG0589	response to stress
JUNP479_0451	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JUNP479_0456	COG2010	Cytochrome c
JUNP479_0459	COG3278	Belongs to the heme-copper respiratory oxidase family
JUNP479_0461	COG1956	GAF domain-containing protein
JUNP479_0462	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JUNP479_0464	COG0308	aminopeptidase N
JUNP479_0466	COG2902	Dehydrogenase
JUNP479_0467	COG0167	dihydroorotate dehydrogenase activity
JUNP479_0470	COG3706	GGDEF domain
JUNP479_0470	COG5001	Diguanylate cyclase
JUNP479_0470	COG4251	negative regulation of phosphorylation
JUNP479_0470	COG2203	Gaf domain
JUNP479_0471	COG2201	protein-glutamate methylesterase activity
JUNP479_0473	COG0835	chemotaxis
JUNP479_0474	COG3290	protein histidine kinase activity
JUNP479_0474	COG0840	transmembrane signaling receptor activity
JUNP479_0479	COG0116	Belongs to the methyltransferase superfamily
JUNP479_0479	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JUNP479_0481	COG0488	(ABC) transporter
JUNP479_0483	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JUNP479_0484	COG1067	ATP-dependent peptidase activity
JUNP479_0488	COG3141	response to X-ray
JUNP479_0490	COG4221	oxidoreductase activity
JUNP479_0495	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JUNP479_0500	COG0372	Belongs to the citrate synthase family
JUNP479_0501	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JUNP479_0503	COG2995	paraquat-inducible protein a
JUNP479_0504	COG3008	intermembrane lipid transfer
JUNP479_0505	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JUNP479_0505	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
JUNP479_0508	COG0084	hydrolase, TatD family'
JUNP479_0509	COG0470	DNA polymerase III
JUNP479_0510	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JUNP479_0511	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JUNP479_0512	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JUNP479_0514	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JUNP479_0515	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_0517	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JUNP479_0518	COG0416	fatty acid biosynthetic process
JUNP479_0519	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JUNP479_0520	COG1399	metal-binding, possibly nucleic acid-binding protein
JUNP479_0521	COG0424	maF-like protein
JUNP479_0524	COG1530	ribonuclease E activity
JUNP479_0525	COG0306	phosphate transporter
JUNP479_0526	COG0717	Belongs to the dCTP deaminase family
JUNP479_0527	COG0572	uridine kinase
JUNP479_0528	COG0489	protein tyrosine kinase activity
JUNP479_0529	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JUNP479_0529	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JUNP479_0531	COG1254	Belongs to the acylphosphatase family
JUNP479_0532	COG0840	transmembrane signaling receptor activity
JUNP479_0533	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JUNP479_0535	COG0709	Synthesizes selenophosphate from selenide and ATP
JUNP479_0536	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
JUNP479_0537	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JUNP479_0539	COG0318	PFAM AMP-dependent synthetase and ligase
JUNP479_0540	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JUNP479_0540	COG0596	Alpha beta hydrolase
JUNP479_0540	COG2226	methyltransferase
JUNP479_0542	COG1214	PFAM Peptidase M22, glycoprotease
JUNP479_0543	COG1199	ATP-dependent helicase activity
JUNP479_0545	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JUNP479_0546	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JUNP479_0547	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JUNP479_0548	COG0131	Imidazoleglycerol-phosphate dehydratase
JUNP479_0548	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JUNP479_0549	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JUNP479_0550	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JUNP479_0551	COG0107	imidazoleglycerol-phosphate synthase activity
JUNP479_0553	COG2199	diguanylate cyclase activity
JUNP479_0554	COG0318	PFAM AMP-dependent synthetase and ligase
JUNP479_0555	COG1288	antiporter activity
JUNP479_0557	COG3134	Outer membrane lipoprotein
JUNP479_0558	COG2080	2 iron, 2 sulfur cluster binding
JUNP479_0559	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JUNP479_0560	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JUNP479_0561	COG2252	PERMEase
JUNP479_0562	COG0402	S-adenosylhomocysteine deaminase activity
JUNP479_0563	COG2233	PERMEase
JUNP479_0564	COG2080	2 iron, 2 sulfur cluster binding
JUNP479_0564	COG1529	Aldehyde oxidase and xanthine dehydrogenase
JUNP479_0565	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
JUNP479_0566	COG0402	S-adenosylhomocysteine deaminase activity
JUNP479_0567	COG0493	'glutamate synthase
JUNP479_0567	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_0569	COG2068	MobA-Related Protein
JUNP479_0571	COG3608	succinylglutamate desuccinylase aspartoacylase
JUNP479_0571	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
JUNP479_0572	COG0697	spore germination
JUNP479_0573	COG0549	Belongs to the carbamate kinase family
JUNP479_0575	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JUNP479_0576	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JUNP479_0577	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JUNP479_0581	COG0242	peptide deformylase activity
JUNP479_0583	COG0693	protein deglycase activity
JUNP479_0586	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JUNP479_0587	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JUNP479_0588	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JUNP479_0590	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JUNP479_0591	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JUNP479_0593	COG0205	6-phosphofructokinase activity
JUNP479_0594	COG1301	dicarboxylic acid transport
JUNP479_0595	COG3123	guanosine phosphorylase activity
JUNP479_0596	COG1760	l-serine dehydratase
JUNP479_0597	COG1760	l-serine dehydratase
JUNP479_0601	COG0814	amino acid
JUNP479_0602	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JUNP479_0603	COG0514	ATP-dependent DNA helicase (RecQ)
JUNP479_0604	COG2766	serine protein kinase
JUNP479_0605	COG2718	Belongs to the UPF0229 family
JUNP479_0606	COG2719	SpoVR family
JUNP479_0607	COG1250	3-hydroxyacyl-CoA dehydrogenase
JUNP479_0607	COG1024	Enoyl-CoA hydratase
JUNP479_0608	COG0183	Belongs to the thiolase family
JUNP479_0609	COG0714	Associated with various cellular activities
JUNP479_0617	COG2067	long-chain fatty acid transport protein
JUNP479_0618	COG2067	long-chain fatty acid transport protein
JUNP479_0619	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JUNP479_0622	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JUNP479_0624	COG1643	Atp-dependent helicase
JUNP479_0625	COG0517	IMP dehydrogenase activity
JUNP479_0625	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JUNP479_0625	COG0617	tRNA 3'-terminal CCA addition
JUNP479_0626	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JUNP479_0628	COG0438	transferase activity, transferring glycosyl groups
JUNP479_0629	COG0297	glycogen (starch) synthase activity
JUNP479_0632	COG0110	maltose O-acetyltransferase activity
JUNP479_0633	COG0438	transferase activity, transferring glycosyl groups
JUNP479_0643	COG0438	transferase activity, transferring glycosyl groups
JUNP479_0644	COG1215	transferase activity, transferring glycosyl groups
JUNP479_0645	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JUNP479_0653	COG0784	Response regulator, receiver
JUNP479_0653	COG2205	protein histidine kinase activity
JUNP479_0654	COG2925	Exonuclease
JUNP479_0656	COG3345	alpha-galactosidase
JUNP479_0657	COG1380	Effector of murein hydrolase LrgA
JUNP479_0658	COG1346	cytolysis
JUNP479_0659	COG0295	cytidine deaminase activity
JUNP479_0660	COG3033	Beta-eliminating lyase
JUNP479_0661	COG3046	protein related to deoxyribodipyrimidine photolyase
JUNP479_0662	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_0663	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_0664	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JUNP479_0669	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_0670	COG4191	Histidine kinase
JUNP479_0672	COG3158	transport of potassium into the cell
JUNP479_0673	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_0674	COG0651	ATP synthesis coupled electron transport
JUNP479_0675	COG0650	Formate hydrogenlyase subunit 4
JUNP479_0676	COG3261	NADH dehydrogenase
JUNP479_0676	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
JUNP479_0677	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_0678	COG3260	NADH ubiquinone oxidoreductase 20
JUNP479_0680	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JUNP479_0682	COG1921	L-seryl-tRNASec selenium transferase activity
JUNP479_0684	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
JUNP479_0685	COG0298	carbon dioxide binding
JUNP479_0687	COG0309	Hydrogenase expression formation protein (HypE)
JUNP479_0688	COG0375	protein maturation
JUNP479_0690	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
JUNP479_0692	COG1124	(ABC) transporter
JUNP479_0694	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JUNP479_0697	COG1773	rubredoxin
JUNP479_0698	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JUNP479_0699	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
JUNP479_0700	COG5557	Pfam Polysulphide reductase, NrfD
JUNP479_0701	COG0437	4 iron, 4 sulfur cluster binding
JUNP479_0702	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
JUNP479_0705	COG0730	response to heat
JUNP479_0707	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_0709	COG1024	Enoyl-CoA hydratase
JUNP479_0710	COG1024	Enoyl-CoA hydratase
JUNP479_0711	COG1960	acyl-CoA dehydrogenase activity
JUNP479_0712	COG1960	acyl-CoA dehydrogenase activity
JUNP479_0713	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JUNP479_0714	COG1024	Enoyl-CoA hydratase
JUNP479_0720	COG1584	GPR1 FUN34 yaaH family protein
JUNP479_0721	COG3228	Belongs to the MtfA family
JUNP479_0723	COG1115	amino acid carrier protein
JUNP479_0724	COG1024	Enoyl-CoA hydratase
JUNP479_0727	COG3162	membrane
JUNP479_0728	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JUNP479_0729	COG0488	(ABC) transporter
JUNP479_0730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JUNP479_0731	COG0776	regulation of translation
JUNP479_0732	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JUNP479_0733	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JUNP479_0734	COG0740	serine-type endopeptidase activity
JUNP479_0735	COG0544	peptidyl-prolyl cis-trans isomerase activity
JUNP479_0737	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JUNP479_0738	COG4591	ABC-type transport system involved in lipoprotein release permease component
JUNP479_0739	COG1136	(ABC) transporter
JUNP479_0740	COG4591	ABC-type transport system involved in lipoprotein release permease component
JUNP479_0742	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JUNP479_0743	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JUNP479_0744	COG4166	transmembrane transport
JUNP479_0745	COG0697	spore germination
JUNP479_0747	COG2062	phosphohistidine phosphatase, SixA
JUNP479_0756	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JUNP479_0756	COG0519	Catalyzes the synthesis of GMP from XMP
JUNP479_0757	COG0517	IMP dehydrogenase activity
JUNP479_0757	COG0516	GMP reductase activity
JUNP479_0758	COG3158	transport of potassium into the cell
JUNP479_0762	COG1570	exodeoxyribonuclease VII activity
JUNP479_0763	COG2188	Transcriptional regulator
JUNP479_0764	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_0764	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_0764	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_0765	COG0383	alpha-mannosidase activity
JUNP479_0766	COG1181	Belongs to the D-alanine--D-alanine ligase family
JUNP479_0768	COG0386	Belongs to the glutathione peroxidase family
JUNP479_0769	COG0513	Belongs to the DEAD box helicase family
JUNP479_0772	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JUNP479_0773	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JUNP479_0774	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JUNP479_0784	COG5001	Diguanylate cyclase
JUNP479_0784	COG3300	MHYT domain
JUNP479_0787	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JUNP479_0789	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JUNP479_0791	COG0563	adenylate kinase activity
JUNP479_0793	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JUNP479_0794	COG1286	toxin biosynthetic process
JUNP479_0795	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JUNP479_0796	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JUNP479_0797	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JUNP479_0798	COG1674	ftsk spoiiie
JUNP479_0798	COG0531	amino acid
JUNP479_0800	COG0686	Belongs to the AlaDH PNT family
JUNP479_0801	COG0492	ferredoxin-NADP+ reductase activity
JUNP479_0802	COG3706	GGDEF domain
JUNP479_0803	COG3134	Outer membrane lipoprotein
JUNP479_0804	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JUNP479_0805	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JUNP479_0806	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JUNP479_0807	COG0542	response to heat
JUNP479_0808	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JUNP479_0809	COG1278	Cold shock
JUNP479_0810	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JUNP479_0814	COG0745	RESPONSE REGULATOR receiver
JUNP479_0815	COG2205	protein histidine kinase activity
JUNP479_0817	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JUNP479_0817	COG0392	lysyltransferase activity
JUNP479_0819	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JUNP479_0820	COG2194	sulfuric ester hydrolase activity
JUNP479_0823	COG0659	secondary active sulfate transmembrane transporter activity
JUNP479_0829	COG0672	)-iron permease
JUNP479_0833	COG2814	Major facilitator Superfamily
JUNP479_0837	COG0596	Alpha beta hydrolase
JUNP479_0841	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JUNP479_0842	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JUNP479_0842	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JUNP479_0843	COG0527	aspartate kinase activity
JUNP479_0845	COG1368	sulfuric ester hydrolase activity
JUNP479_0846	COG1619	proteins homologs of microcin C7 resistance protein MccF
JUNP479_0847	COG4667	esterase of the alpha-beta hydrolase superfamily
JUNP479_0851	COG1648	precorrin-2 dehydrogenase activity
JUNP479_0851	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JUNP479_0853	COG0393	Putative heavy-metal-binding
JUNP479_0854	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JUNP479_0855	COG0285	dihydrofolate synthase activity
JUNP479_0856	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JUNP479_0857	COG0101	tRNA pseudouridine synthase activity
JUNP479_0859	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JUNP479_0860	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JUNP479_0861	COG0671	phosphoesterase, PA-phosphatase related
JUNP479_0862	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JUNP479_0863	COG2056	Na+-H+ antiporter family
JUNP479_0864	COG3300	MHYT domain
JUNP479_0864	COG5001	Diguanylate cyclase
JUNP479_0867	COG2050	protein possibly involved in aromatic compounds catabolism
JUNP479_0869	COG0277	FAD linked oxidase domain protein
JUNP479_0869	COG0247	lactate metabolic process
JUNP479_0871	COG1253	flavin adenine dinucleotide binding
JUNP479_0872	COG1902	pentaerythritol trinitrate reductase activity
JUNP479_0875	COG0647	UMP catabolic process
JUNP479_0876	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JUNP479_0876	COG4651	solute:proton antiporter activity
JUNP479_0878	COG0367	asparagine synthase
JUNP479_0880	COG0625	glutathione transferase activity
JUNP479_0882	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JUNP479_0885	COG0564	pseudouridine synthase activity
JUNP479_0886	COG4160	amino acid transport
JUNP479_0890	COG2431	L-lysine efflux transmembrane transporter activity
JUNP479_0891	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JUNP479_0894	COG1393	Belongs to the ArsC family
JUNP479_0895	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JUNP479_0896	COG4783	chaperone-mediated protein folding
JUNP479_0897	COG0425	Belongs to the sulfur carrier protein TusA family
JUNP479_0902	COG3842	ATPase activity
JUNP479_0903	COG3833	ABC-type maltose transport systems, permease component
JUNP479_0904	COG1175	transmembrane transport
JUNP479_0906	COG3081	Nucleoid-associated protein
JUNP479_0907	COG3082	Protein of unknown function (DUF1414)
JUNP479_0908	COG3083	sulfuric ester hydrolase activity
JUNP479_0909	COG1464	Belongs to the NlpA lipoprotein family
JUNP479_0912	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JUNP479_0912	COG0574	Belongs to the PEP-utilizing enzyme family
JUNP479_0913	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JUNP479_0918	COG0546	phosphoglycolate phosphatase activity
JUNP479_0919	COG0840	transmembrane signaling receptor activity
JUNP479_0920	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JUNP479_0920	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JUNP479_0921	COG0509	glycine decarboxylation via glycine cleavage system
JUNP479_0922	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JUNP479_0923	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JUNP479_0924	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JUNP479_0928	COG0243	molybdopterin cofactor binding
JUNP479_0929	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JUNP479_0930	COG0583	DNA-binding transcription factor activity
JUNP479_0931	COG2814	Major facilitator Superfamily
JUNP479_0932	COG0625	glutathione transferase activity
JUNP479_0934	COG0483	inositol monophosphate 1-phosphatase activity
JUNP479_0937	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JUNP479_0939	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JUNP479_0940	COG1086	Polysaccharide biosynthesis protein
JUNP479_0941	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JUNP479_0943	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JUNP479_0944	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JUNP479_0947	COG2089	acid synthase
JUNP479_0949	COG2226	methyltransferase
JUNP479_0955	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JUNP479_0962	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JUNP479_0966	COG0301	tRNA thio-modification
JUNP479_0966	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JUNP479_0969	COG4953	penicillin-binding protein 1C
JUNP479_0970	COG2373	Large extracellular alpha-helical protein
JUNP479_0972	COG0446	pyridine nucleotide-disulphide oxidoreductase
JUNP479_0974	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JUNP479_0976	COG1252	NADH dehydrogenase
JUNP479_0977	COG3150	esterase
JUNP479_0978	COG2233	PERMEase
JUNP479_0979	COG1164	Oligoendopeptidase f
JUNP479_0980	COG2354	Protein conserved in bacteria
JUNP479_0982	COG1301	dicarboxylic acid transport
JUNP479_0985	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JUNP479_0988	COG0537	adenosine 5'-monophosphoramidase activity
JUNP479_0995	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JUNP479_0996	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JUNP479_0998	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JUNP479_0999	COG1605	Chorismate mutase
JUNP479_0999	COG0287	Prephenate dehydrogenase
JUNP479_1001	COG1199	ATP-dependent helicase activity
JUNP479_1003	COG0123	including yeast histone deacetylase and acetoin utilization protein
JUNP479_1004	COG0477	Major facilitator Superfamily
JUNP479_1006	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JUNP479_1011	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JUNP479_1012	COG2197	response regulator
JUNP479_1016	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_1017	COG0765	amino acid transport
JUNP479_1021	COG0531	amino acid
JUNP479_1024	COG1253	flavin adenine dinucleotide binding
JUNP479_1025	COG0704	Plays a role in the regulation of phosphate uptake
JUNP479_1026	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JUNP479_1027	COG0581	inorganic phosphate transmembrane transporter activity
JUNP479_1028	COG0573	inorganic phosphate transmembrane transporter activity
JUNP479_1032	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JUNP479_1036	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JUNP479_1037	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JUNP479_1038	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JUNP479_1039	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JUNP479_1044	COG2716	regulation of RNA biosynthetic process
JUNP479_1045	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JUNP479_1047	COG2239	Acts as a magnesium transporter
JUNP479_1050	COG3951	Flagellar rod assembly protein muramidase FlgJ
JUNP479_1050	COG1705	Flagellar rod assembly protein muramidase FlgJ
JUNP479_1051	COG1706	bacterial-type flagellum-dependent cell motility
JUNP479_1052	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JUNP479_1054	COG4787	bacterial-type flagellum-dependent cell motility
JUNP479_1056	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JUNP479_1058	COG1815	bacterial-type flagellum-dependent cell motility
JUNP479_1059	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JUNP479_1060	COG0835	chemotaxis
JUNP479_1060	COG0784	Response regulator, receiver
JUNP479_1061	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
JUNP479_1064	COG0622	Phosphoesterase
JUNP479_1065	COG4166	transmembrane transport
JUNP479_1070	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JUNP479_1071	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JUNP479_1072	COG1882	Formate acetyltransferase
JUNP479_1073	COG1349	DNA-binding transcription factor activity
JUNP479_1080	COG1278	Cold shock
JUNP479_1085	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
JUNP479_1085	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JUNP479_1086	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_1087	COG1535	isochorismatase
JUNP479_1087	COG3433	isochorismatase activity
JUNP479_1088	COG1021	2,3-dihydroxybenzoate-AMP ligase
JUNP479_1089	COG1169	isochorismate synthase
JUNP479_1090	COG4771	TonB-dependent receptor
JUNP479_1091	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JUNP479_1093	COG0741	lytic transglycosylase activity
JUNP479_1096	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JUNP479_1100	COG2911	Protein conserved in bacteria
JUNP479_1101	COG0729	surface antigen
JUNP479_1103	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JUNP479_1105	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JUNP479_1107	COG4134	Bacterial extracellular solute-binding protein
JUNP479_1108	COG4135	transport system, permease component
JUNP479_1109	COG4136	ATPase activity
JUNP479_1110	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JUNP479_1111	COG2951	lytic endotransglycosylase activity
JUNP479_1112	COG0033	Phosphoglucomutase
JUNP479_1113	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JUNP479_1114	COG0596	Alpha beta hydrolase
JUNP479_1117	COG0716	FMN binding
JUNP479_1119	COG0735	belongs to the Fur family
JUNP479_1120	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JUNP479_1122	COG1263	PTS System
JUNP479_1122	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_1122	COG2190	(PTS) system
JUNP479_1123	COG0363	glucosamine-6-phosphate deaminase activity
JUNP479_1124	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JUNP479_1125	COG1940	carbohydrate kinase activity
JUNP479_1125	COG1846	Transcriptional regulator
JUNP479_1132	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JUNP479_1134	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JUNP479_1137	COG2199	diguanylate cyclase activity
JUNP479_1137	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JUNP479_1139	COG3275	phosphorelay sensor kinase activity
JUNP479_1140	COG3279	Response regulator of the LytR AlgR family
JUNP479_1141	COG1966	Carbon starvation protein
JUNP479_1143	COG1566	PFAM secretion protein HlyD family protein
JUNP479_1144	COG1061	Type III restriction enzyme res subunit
JUNP479_1145	COG2027	D-alanyl-D-alanine carboxypeptidase
JUNP479_1146	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JUNP479_1147	COG3021	interspecies interaction between organisms
JUNP479_1149	COG1607	acyl-coa hydrolase
JUNP479_1150	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JUNP479_1152	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JUNP479_1152	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JUNP479_1152	COG1013	pyruvate-flavodoxin oxidoreductase activity
JUNP479_1152	COG0674	pyruvate-flavodoxin oxidoreductase activity
JUNP479_1154	COG0633	Ferredoxin
JUNP479_1154	COG0633	Ferredoxin
JUNP479_1154	COG3217	Mosc domain protein beta barrel domain protein
JUNP479_1154	COG3217	Mosc domain protein beta barrel domain protein
JUNP479_1155	COG0501	Belongs to the peptidase M48B family
JUNP479_1156	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JUNP479_1157	COG1073	alpha beta
JUNP479_1157	COG2226	methyltransferase
JUNP479_1158	COG0156	8-amino-7-oxononanoate synthase activity
JUNP479_1159	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JUNP479_1160	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JUNP479_1163	COG0017	Asparaginyl-tRNA synthetase
JUNP479_1165	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JUNP479_1169	COG3069	C4-dicarboxylate transmembrane transporter activity
JUNP479_1172	COG1393	Belongs to the ArsC family
JUNP479_1173	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JUNP479_1174	COG1876	peptidase activity
JUNP479_1176	COG3263	regulation of cellular component size
JUNP479_1178	COG3263	regulation of cellular component size
JUNP479_1179	COG1280	lysine exporter protein (LysE YggA)
JUNP479_1184	COG1957	nucleoside hydrolase
JUNP479_1185	COG0564	pseudouridine synthase activity
JUNP479_1187	COG1454	alcohol dehydrogenase
JUNP479_1188	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JUNP479_1189	COG0702	epimerase
JUNP479_1191	COG0095	Lipoate-protein ligase
JUNP479_1192	COG5001	Diguanylate cyclase
JUNP479_1199	COG0446	pyridine nucleotide-disulphide oxidoreductase
JUNP479_1201	COG1285	pathogenesis
JUNP479_1202	COG0484	heat shock protein binding
JUNP479_1203	COG0443	Heat shock 70 kDa protein
JUNP479_1204	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JUNP479_1205	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JUNP479_1207	COG0583	DNA-binding transcription factor activity
JUNP479_1208	COG1486	melibiose metabolic process
JUNP479_1209	COG0497	DNA recombination
JUNP479_1210	COG1227	inorganic diphosphatase activity
JUNP479_1211	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_1212	COG0577	efflux transmembrane transporter activity
JUNP479_1212	COG1136	(ABC) transporter
JUNP479_1213	COG1538	Outer membrane efflux protein
JUNP479_1216	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JUNP479_1217	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JUNP479_1220	COG1091	dTDP-4-dehydrorhamnose reductase activity
JUNP479_1224	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JUNP479_1229	COG1086	Polysaccharide biosynthesis protein
JUNP479_1232	COG1215	transferase activity, transferring glycosyl groups
JUNP479_1232	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JUNP479_1235	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JUNP479_1235	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JUNP479_1237	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JUNP479_1239	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JUNP479_1240	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_1241	COG1309	transcriptional regulator
JUNP479_1246	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JUNP479_1251	COG0813	purine-nucleoside phosphorylase activity
JUNP479_1255	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JUNP479_1256	COG0083	homoserine kinase activity
JUNP479_1258	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JUNP479_1259	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
JUNP479_1260	COG1946	Acyl-CoA thioesterase
JUNP479_1262	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JUNP479_1263	COG1993	acr, cog1993
JUNP479_1273	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JUNP479_1275	COG0009	L-threonylcarbamoyladenylate synthase
JUNP479_1277	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JUNP479_1278	COG0512	Glutamine amidotransferase of anthranilate synthase
JUNP479_1278	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JUNP479_1279	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JUNP479_1280	COG0134	indole-3-glycerol-phosphate synthase activity
JUNP479_1280	COG0135	phosphoribosylanthranilate isomerase activity
JUNP479_1281	COG0133	tryptophan synthase activity
JUNP479_1282	COG0159	tryptophan synthase activity
JUNP479_1289	COG1988	membrane-bound metal-dependent
JUNP479_1293	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JUNP479_1295	COG0798	PFAM Bile acid sodium symporter
JUNP479_1301	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JUNP479_1303	COG0745	RESPONSE REGULATOR receiver
JUNP479_1306	COG4988	ABC transporter
JUNP479_1307	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JUNP479_1311	COG1720	tRNA m6t6A37 methyltransferase activity
JUNP479_1316	COG3161	chorismate lyase activity
JUNP479_1317	COG3152	Membrane
JUNP479_1322	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_1323	COG1396	sequence-specific DNA binding
JUNP479_1323	COG1917	Cupin 2, conserved barrel domain protein
JUNP479_1324	COG1012	belongs to the aldehyde dehydrogenase family
JUNP479_1326	COG0531	amino acid
JUNP479_1329	COG0531	amino acid
JUNP479_1331	COG1283	sodium-dependent phosphate transmembrane transporter activity
JUNP479_1333	COG2974	May be involved in recombination
JUNP479_1335	COG0420	3'-5' exonuclease activity
JUNP479_1336	COG0419	ATPase involved in DNA repair
JUNP479_1337	COG3384	dioxygenase
JUNP479_1339	COG0469	pyruvate kinase activity
JUNP479_1340	COG1196	nuclear chromosome segregation
JUNP479_1340	COG3264	Mechanosensitive ion channel
JUNP479_1341	COG3706	GGDEF domain
JUNP479_1342	COG2190	(PTS) system
JUNP479_1344	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_1345	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JUNP479_1346	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JUNP479_1349	COG3437	response regulator, receiver
JUNP479_1349	COG2770	Histidine kinase
JUNP479_1350	COG3267	Type II secretory pathway component ExeA
JUNP479_1350	COG3409	Peptidoglycan-binding domain 1 protein
JUNP479_1352	COG3031	protein transport across the cell outer membrane
JUNP479_1354	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JUNP479_1355	COG1459	type II secretion system
JUNP479_1356	COG2165	general secretion pathway protein
JUNP479_1358	COG2165	general secretion pathway protein
JUNP479_1359	COG4795	General secretion pathway protein
JUNP479_1360	COG3156	type II secretion system protein K
JUNP479_1362	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JUNP479_1364	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JUNP479_1369	COG0561	phosphatase activity
JUNP479_1370	COG3623	hexulose-6-phosphate isomerase
JUNP479_1373	COG0670	Belongs to the BI1 family
JUNP479_1374	COG1289	transmembrane transporter activity
JUNP479_1375	COG2920	part of a sulfur-relay system
JUNP479_1376	COG0673	inositol 2-dehydrogenase activity
JUNP479_1378	COG0583	DNA-binding transcription factor activity
JUNP479_1382	COG1032	radical SAM domain protein
JUNP479_1383	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JUNP479_1384	COG1566	PFAM secretion protein HlyD family protein
JUNP479_1385	COG3706	GGDEF domain
JUNP479_1386	COG1752	Esterase of the alpha-beta hydrolase superfamily
JUNP479_1387	COG0733	neurotransmitter:sodium symporter activity
JUNP479_1391	COG2885	chlorophyll binding
JUNP479_1391	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
JUNP479_1393	COG0281	malic enzyme
JUNP479_1395	COG0534	Mate efflux family protein
JUNP479_1398	COG2233	PERMEase
JUNP479_1399	COG1115	amino acid carrier protein
JUNP479_1400	COG0019	diaminopimelate decarboxylase activity
JUNP479_1405	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JUNP479_1409	COG0545	Peptidyl-prolyl cis-trans isomerase
JUNP479_1410	COG3142	Participates in the control of copper homeostasis
JUNP479_1415	COG5002	protein histidine kinase activity
JUNP479_1416	COG0745	RESPONSE REGULATOR receiver
JUNP479_1417	COG0346	lactoylglutathione lyase activity
JUNP479_1418	COG3706	GGDEF domain
JUNP479_1420	COG0697	spore germination
JUNP479_1422	COG3290	protein histidine kinase activity
JUNP479_1423	COG0281	malic enzyme
JUNP479_1432	COG0602	queuosine metabolic process
JUNP479_1433	COG1328	CTP reductase activity
JUNP479_1435	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JUNP479_1436	COG3115	cell septum assembly
JUNP479_1437	COG1196	nuclear chromosome segregation
JUNP479_1439	COG2860	membrane
JUNP479_1441	COG3108	Peptidase M15
JUNP479_1442	COG2989	Protein conserved in bacteria
JUNP479_1445	COG0463	Glycosyl transferase, family 2
JUNP479_1448	COG0366	Alpha amylase catalytic
JUNP479_1456	COG2199	diguanylate cyclase activity
JUNP479_1456	COG2203	Gaf domain
JUNP479_1458	COG3590	peptidase
JUNP479_1460	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JUNP479_1461	COG1982	Orn Lys Arg decarboxylase major
JUNP479_1462	COG0531	amino acid
JUNP479_1463	COG3710	Transcriptional regulator
JUNP479_1464	COG0488	(ABC) transporter
JUNP479_1466	COG0531	amino acid
JUNP479_1470	COG0814	amino acid
JUNP479_1477	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JUNP479_1478	COG0739	heme binding
JUNP479_1479	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JUNP479_1485	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_1485	COG0604	alcohol dehydrogenase
JUNP479_1485	COG3321	synthase
JUNP479_1487	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JUNP479_1489	COG3091	SprT-like family
JUNP479_1491	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JUNP479_1492	COG0189	ligase activity
JUNP479_1494	COG1678	Uncharacterized ACR, COG1678
JUNP479_1495	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JUNP479_1496	COG3104	oligopeptide transport
JUNP479_1503	COG0714	Associated with various cellular activities
JUNP479_1506	COG1115	amino acid carrier protein
JUNP479_1507	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JUNP479_1509	COG0825	malonyl-CoA metabolic process
JUNP479_1511	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JUNP479_1512	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JUNP479_1513	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JUNP479_1514	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JUNP479_1515	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JUNP479_1517	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JUNP479_1518	COG0750	zinc metalloprotease
JUNP479_1519	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JUNP479_1520	COG0575	Belongs to the CDS family
JUNP479_1521	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JUNP479_1522	COG0233	cytoplasmic translational termination
JUNP479_1523	COG0528	UMP kinase activity
JUNP479_1524	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JUNP479_1525	COG0052	Belongs to the universal ribosomal protein uS2 family
JUNP479_1526	COG0024	Methionine aminopeptidase
JUNP479_1528	COG2171	N-acyltransferase activity
JUNP479_1530	COG1263	PTS System
JUNP479_1530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_1534	COG0564	pseudouridine synthase activity
JUNP479_1535	COG3098	single-species biofilm formation
JUNP479_1540	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
JUNP479_1542	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JUNP479_1542	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JUNP479_1545	COG1611	Belongs to the LOG family
JUNP479_1546	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JUNP479_1547	COG0473	3-isopropylmalate dehydrogenase activity
JUNP479_1549	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
JUNP479_1550	COG2363	Small membrane protein
JUNP479_1552	COG0583	DNA-binding transcription factor activity
JUNP479_1553	COG0840	transmembrane signaling receptor activity
JUNP479_1554	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JUNP479_1557	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JUNP479_1558	COG1666	GTP binding
JUNP479_1561	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JUNP479_1563	COG2813	Specifically methylates the guanine in position
JUNP479_1564	COG0271	Belongs to the BolA IbaG family
JUNP479_1565	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JUNP479_1566	COG1805	sodium ion transport
JUNP479_1567	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JUNP479_1568	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JUNP479_1569	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JUNP479_1570	COG2871	sodium ion transport
JUNP479_1571	COG1477	protein flavinylation
JUNP479_1577	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JUNP479_1580	COG0300	oxidoreductase activity
JUNP479_1582	COG0415	Belongs to the DNA photolyase family
JUNP479_1583	COG0789	Transcriptional regulator
JUNP479_1584	COG3272	Protein of unknown function (DUF1722)
JUNP479_1590	COG1605	Chorismate mutase
JUNP479_1590	COG0077	Prephenate dehydratase
JUNP479_1596	COG0840	transmembrane signaling receptor activity
JUNP479_1599	COG0300	oxidoreductase activity
JUNP479_1604	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JUNP479_1608	COG0737	Belongs to the 5'-nucleotidase family
JUNP479_1609	COG0826	peptidase U32
JUNP479_1610	COG1280	lysine exporter protein (LysE YggA)
JUNP479_1611	COG0583	DNA-binding transcription factor activity
JUNP479_1612	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JUNP479_1614	COG0745	RESPONSE REGULATOR receiver
JUNP479_1616	COG2198	Histidine kinase
JUNP479_1616	COG0643	Histidine kinase
JUNP479_1618	COG0835	chemotaxis
JUNP479_1619	COG0840	transmembrane signaling receptor activity
JUNP479_1621	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
JUNP479_1622	COG2201	protein-glutamate methylesterase activity
JUNP479_1623	COG1185	polyribonucleotide nucleotidyltransferase activity
JUNP479_1624	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JUNP479_1625	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JUNP479_1626	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JUNP479_1627	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JUNP479_1628	COG0195	Participates in both transcription termination and antitermination
JUNP479_1629	COG0779	Required for maturation of 30S ribosomal subunits
JUNP479_1632	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JUNP479_1633	COG0149	triose-phosphate isomerase activity
JUNP479_1634	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JUNP479_1635	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JUNP479_1637	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JUNP479_1638	COG1534	Rna-binding protein
JUNP479_1641	COG1360	Flagellar Motor Protein
JUNP479_1641	COG1360	Flagellar Motor Protein
JUNP479_1642	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JUNP479_1643	COG1722	exodeoxyribonuclease VII activity
JUNP479_1644	COG0142	geranyltranstransferase activity
JUNP479_1645	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JUNP479_1647	COG0601	transmembrane transport
JUNP479_1648	COG4166	transmembrane transport
JUNP479_1650	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JUNP479_1651	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JUNP479_1652	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JUNP479_1656	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JUNP479_1656	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JUNP479_1657	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JUNP479_1659	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JUNP479_1662	COG3381	protein complex oligomerization
JUNP479_1667	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JUNP479_1668	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JUNP479_1669	COG0511	ligase activity, forming carbon-carbon bonds
JUNP479_1670	COG0439	Biotin carboxylase
JUNP479_1671	COG3924	membrane
JUNP479_1672	COG4145	pantothenate transmembrane transporter activity
JUNP479_1673	COG1263	PTS System
JUNP479_1673	COG2190	(PTS) system
JUNP479_1673	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_1674	COG0583	DNA-binding transcription factor activity
JUNP479_1675	COG0604	alcohol dehydrogenase
JUNP479_1676	COG2264	protein methyltransferase activity
JUNP479_1677	COG0110	maltose O-acetyltransferase activity
JUNP479_1678	COG0778	Nitroreductase
JUNP479_1679	COG0446	pyridine nucleotide-disulphide oxidoreductase
JUNP479_1679	COG1902	pentaerythritol trinitrate reductase activity
JUNP479_1680	COG0616	signal peptide processing
JUNP479_1682	COG4174	ABC transporter (Permease)
JUNP479_1683	COG4239	(ABC) transporter, permease
JUNP479_1684	COG0444	Belongs to the ABC transporter superfamily
JUNP479_1685	COG4608	Belongs to the ABC transporter superfamily
JUNP479_1689	COG3416	Protein conserved in bacteria
JUNP479_1691	COG0741	lytic transglycosylase activity
JUNP479_1694	COG0488	(ABC) transporter
JUNP479_1696	COG2252	PERMEase
JUNP479_1697	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JUNP479_1698	COG0840	transmembrane signaling receptor activity
JUNP479_1700	COG1278	Cold shock
JUNP479_1709	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JUNP479_1710	COG1162	GTPase activity
JUNP479_1711	COG0688	phosphatidylethanolamine metabolic process
JUNP479_1712	COG4628	conserved protein (DUF2132)
JUNP479_1715	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JUNP479_1719	COG1073	alpha beta
JUNP479_1720	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JUNP479_1721	COG2195	Cleaves the N-terminal amino acid of tripeptides
JUNP479_1722	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JUNP479_1723	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JUNP479_1724	COG3178	'Phosphotransferase
JUNP479_1725	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JUNP479_1726	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JUNP479_1727	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JUNP479_1728	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JUNP479_1729	COG2967	ApaG domain
JUNP479_1730	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JUNP479_1732	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JUNP479_1733	COG3314	Sporulation integral membrane protein YlbJ
JUNP479_1734	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JUNP479_1735	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JUNP479_1736	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JUNP479_1737	COG0142	geranyltranstransferase activity
JUNP479_1738	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JUNP479_1739	COG0330	HflC and HflK could
JUNP479_1740	COG0330	HflC and HflK could
JUNP479_1741	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JUNP479_1742	COG1923	regulation of RNA biosynthetic process
JUNP479_1743	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JUNP479_1744	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JUNP479_1746	COG0802	atpase or kinase
JUNP479_1747	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JUNP479_1747	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JUNP479_1751	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JUNP479_1752	COG2011	ABC-type metal ion transport system permease component
JUNP479_1753	COG1464	Belongs to the NlpA lipoprotein family
JUNP479_1755	COG0840	transmembrane signaling receptor activity
JUNP479_1760	COG2198	Histidine kinase
JUNP479_1760	COG0784	Response regulator, receiver
JUNP479_1760	COG5002	protein histidine kinase activity
JUNP479_1767	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JUNP479_1768	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JUNP479_1769	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JUNP479_1770	COG2716	regulation of RNA biosynthetic process
JUNP479_1771	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JUNP479_1772	COG3013	Belongs to the UPF0304 family
JUNP479_1774	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JUNP479_1775	COG0857	belongs to the CobB CobQ family
JUNP479_1775	COG0280	phosphate acetyltransferase
JUNP479_1776	COG1555	photosystem II stabilization
JUNP479_1777	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JUNP479_1778	COG3104	oligopeptide transport
JUNP479_1779	COG0745	RESPONSE REGULATOR receiver
JUNP479_1785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_1788	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JUNP479_1795	COG0440	acetolactate synthase activity
JUNP479_1796	COG0028	Belongs to the TPP enzyme family
JUNP479_1801	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JUNP479_1802	COG0473	3-isopropylmalate dehydrogenase activity
JUNP479_1803	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JUNP479_1804	COG0066	3-isopropylmalate dehydratase activity
JUNP479_1808	COG1178	ABC-type Fe3 transport system permease component
JUNP479_1809	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
JUNP479_1810	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JUNP479_1820	COG0459	protein refolding
JUNP479_1821	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JUNP479_1822	COG0534	Mate efflux family protein
JUNP479_1823	COG3030	protein affecting phage T7 exclusion by the F plasmid
JUNP479_1824	COG1027	Aspartate ammonia-lyase
JUNP479_1825	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JUNP479_1826	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JUNP479_1827	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JUNP479_1828	COG1610	YqeY-like protein
JUNP479_1830	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JUNP479_1834	COG0151	Belongs to the GarS family
JUNP479_1835	COG0138	bifunctional purine biosynthesis protein purh
JUNP479_1837	COG3036	rescue of stalled ribosome
JUNP479_1838	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JUNP479_1839	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JUNP479_1842	COG0673	inositol 2-dehydrogenase activity
JUNP479_1844	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JUNP479_1845	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JUNP479_1847	COG0583	DNA-binding transcription factor activity
JUNP479_1848	COG0477	Major facilitator Superfamily
JUNP479_1850	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JUNP479_1853	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JUNP479_1856	COG0456	acetyltransferase
JUNP479_1857	COG1022	Amp-dependent synthetase and ligase
JUNP479_1858	COG2918	glutathione biosynthetic process
JUNP479_1859	COG0612	Peptidase, M16
JUNP479_1860	COG1238	metal cluster binding
JUNP479_1861	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JUNP479_1861	COG4221	oxidoreductase activity
JUNP479_1861	COG3321	synthase
JUNP479_1861	COG0604	alcohol dehydrogenase
JUNP479_1865	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JUNP479_1866	COG0359	binds to the 23S rRNA
JUNP479_1867	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JUNP479_1868	COG0360	Binds together with S18 to 16S ribosomal RNA
JUNP479_1869	COG1914	H( )-stimulated, divalent metal cation uptake system
JUNP479_1870	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JUNP479_1872	COG0776	regulation of translation
JUNP479_1873	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
JUNP479_1875	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JUNP479_1878	COG0560	Phosphoserine phosphatase
JUNP479_1880	COG0813	purine-nucleoside phosphorylase activity
JUNP479_1881	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JUNP479_1882	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JUNP479_1883	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JUNP479_1885	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JUNP479_1886	COG0084	hydrolase, TatD family'
JUNP479_1887	COG2165	general secretion pathway protein
JUNP479_1889	COG1854	S-ribosylhomocysteine lyase activity
JUNP479_1892	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JUNP479_1892	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JUNP479_1893	COG4969	Belongs to the N-Me-Phe pilin family
JUNP479_1900	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JUNP479_1901	COG1047	Peptidyl-prolyl cis-trans
JUNP479_1902	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JUNP479_1903	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JUNP479_1904	COG0196	riboflavin kinase activity
JUNP479_1905	COG0728	peptidoglycan biosynthetic process
JUNP479_1906	COG0268	Binds directly to 16S ribosomal RNA
JUNP479_1907	COG0640	Transcriptional regulator
JUNP479_1908	COG0583	DNA-binding transcription factor activity
JUNP479_1910	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JUNP479_1911	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JUNP479_1912	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JUNP479_1913	COG3605	phosphoenolpyruvate-protein phosphotransferase activity
JUNP479_1914	COG1051	belongs to the nudix hydrolase family
JUNP479_1917	COG0335	large ribosomal subunit rRNA binding
JUNP479_1918	COG0336	Belongs to the RNA methyltransferase TrmD family
JUNP479_1919	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JUNP479_1920	COG0228	four-way junction DNA binding
JUNP479_1921	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JUNP479_1922	COG4137	Cytochrome C assembly protein
JUNP479_1923	COG4536	flavin adenine dinucleotide binding
JUNP479_1925	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JUNP479_1925	COG1017	nitric oxide dioxygenase activity
JUNP479_1926	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JUNP479_1927	COG0039	L-malate dehydrogenase activity
JUNP479_1928	COG4160	amino acid transport
JUNP479_1929	COG4215	(ABC) transporter
JUNP479_1930	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_1931	COG1126	abc transporter atp-binding protein
JUNP479_1932	COG1438	arginine binding
JUNP479_1933	COG2837	iron assimilation
JUNP479_1934	COG3842	ATPase activity
JUNP479_1936	COG1840	ABC-type Fe3 transport system, periplasmic component
JUNP479_1937	COG0347	Belongs to the P(II) protein family
JUNP479_1941	COG3022	response to hydroperoxide
JUNP479_1945	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JUNP479_1946	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JUNP479_1947	COG0762	integral membrane protein
JUNP479_1948	COG1872	DUF167
JUNP479_1950	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JUNP479_1951	COG0583	DNA-binding transcription factor activity
JUNP479_1954	COG1929	Belongs to the glycerate kinase type-1 family
JUNP479_1955	COG2610	gluconate transmembrane transporter activity
JUNP479_1956	COG3835	regulator
JUNP479_1957	COG3112	Uncharacterised protein family (UPF0231)
JUNP479_1963	COG0513	Belongs to the DEAD box helicase family
JUNP479_1971	COG1448	Aminotransferase
JUNP479_1974	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JUNP479_1975	COG1328	CTP reductase activity
JUNP479_1982	COG1215	transferase activity, transferring glycosyl groups
JUNP479_1983	COG0726	polysaccharide deacetylase
JUNP479_1983	COG1649	PFAM Uncharacterised BCR, COG1649
JUNP479_1986	COG0840	transmembrane signaling receptor activity
JUNP479_1987	COG3397	chitin binding
JUNP479_1988	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_1989	COG1126	abc transporter atp-binding protein
JUNP479_1992	COG0765	amino acid transport
JUNP479_1993	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JUNP479_1994	COG0583	DNA-binding transcription factor activity
JUNP479_1995	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JUNP479_1996	COG4208	sulfate ABC transporter
JUNP479_1997	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JUNP479_1999	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JUNP479_2000	COG3174	membrane
JUNP479_2001	COG0110	maltose O-acetyltransferase activity
JUNP479_2004	COG1011	Hydrolase
JUNP479_2005	COG0494	nUDIX hydrolase
JUNP479_2006	COG1218	3'(2'),5'-bisphosphate nucleotidase
JUNP479_2007	COG0814	amino acid
JUNP479_2008	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JUNP479_2011	COG0626	cystathionine gamma-synthase activity
JUNP479_2012	COG0460	homoserine dehydrogenase
JUNP479_2012	COG0527	aspartate kinase activity
JUNP479_2013	COG0306	phosphate transporter
JUNP479_2014	COG1392	Phosphate transport regulator
JUNP479_2015	COG3025	triphosphatase activity
JUNP479_2016	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JUNP479_2017	COG2813	Specifically methylates the guanine in position
JUNP479_2018	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JUNP479_2019	COG0297	glycogen (starch) synthase activity
JUNP479_2027	COG1757	Na H antiporter
JUNP479_2028	COG0316	Belongs to the HesB IscA family
JUNP479_2030	COG0038	chloride channel
JUNP479_2031	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JUNP479_2036	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JUNP479_2036	COG0045	succinate-CoA ligase (ADP-forming) activity
JUNP479_2036	COG1042	CoA-binding domain protein
JUNP479_2043	COG1396	sequence-specific DNA binding
JUNP479_2044	COG3135	benzoate transporter
JUNP479_2049	COG0840	transmembrane signaling receptor activity
JUNP479_2053	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JUNP479_2054	COG0629	single-stranded DNA binding
JUNP479_2060	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JUNP479_2061	COG1278	Cold shock
JUNP479_2070	COG2194	sulfuric ester hydrolase activity
JUNP479_2072	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JUNP479_2073	COG5642	Protein of unknown function (DUF2384)
JUNP479_2076	COG2916	Histone family protein nucleoid-structuring protein H-NS
JUNP479_2086	COG2252	PERMEase
JUNP479_2087	COG2376	Dihydroxyacetone kinase
JUNP479_2088	COG1461	Dihydroxyacetone kinase
JUNP479_2091	COG3284	Transcriptional regulator
JUNP479_2092	COG0583	DNA-binding transcription factor activity
JUNP479_2096	COG2957	Belongs to the agmatine deiminase family
JUNP479_2098	COG0628	permease
JUNP479_2099	COG0494	nUDIX hydrolase
JUNP479_2102	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JUNP479_2103	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JUNP479_2108	COG0456	acetyltransferase
JUNP479_2109	COG3133	Outer membrane lipoprotein
JUNP479_2110	COG0004	ammonium transporteR
JUNP479_2113	COG3932	Exopolysaccharide synthesis, ExoD
JUNP479_2114	COG0814	amino acid
JUNP479_2117	COG0110	maltose O-acetyltransferase activity
JUNP479_2121	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JUNP479_2122	COG2022	thiamine diphosphate biosynthetic process
JUNP479_2124	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JUNP479_2125	COG0352	thiamine-phosphate diphosphorylase activity
JUNP479_2126	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JUNP479_2127	COG0789	Transcriptional regulator
JUNP479_2130	COG0745	RESPONSE REGULATOR receiver
JUNP479_2131	COG0642	Histidine kinase
JUNP479_2132	COG0189	ligase activity
JUNP479_2133	COG1410	methionine synthase
JUNP479_2133	COG0646	methionine synthase
JUNP479_2141	COG0477	Major facilitator Superfamily
JUNP479_2144	COG0312	modulator of DNA gyrase
JUNP479_2145	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JUNP479_2147	COG3164	Protein of unknown function
JUNP479_2148	COG1530	ribonuclease E activity
JUNP479_2149	COG0424	maF-like protein
JUNP479_2150	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JUNP479_2151	COG1792	Involved in formation and maintenance of cell shape
JUNP479_2152	COG1077	Cell shape determining protein MreB Mrl
JUNP479_2158	COG2165	general secretion pathway protein
JUNP479_2159	COG2165	general secretion pathway protein
JUNP479_2161	COG1459	type II secretion system
JUNP479_2162	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JUNP479_2171	COG2199	diguanylate cyclase activity
JUNP479_2171	COG2200	EAL domain
JUNP479_2173	COG2200	EAL domain
JUNP479_2175	COG0387	Pfam Sodium calcium exchanger
JUNP479_2176	COG2986	histidine ammonia-lyase
JUNP479_2177	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JUNP479_2178	COG0010	Belongs to the arginase family
JUNP479_2179	COG1228	amidohydrolase
JUNP479_2180	COG2188	Transcriptional regulator
JUNP479_2181	COG0288	reversible hydration of carbon dioxide
JUNP479_2183	COG2177	Part of the ABC transporter FtsEX involved in
JUNP479_2184	COG2884	Cell division ATP-binding protein ftsE
JUNP479_2185	COG0552	protein localization to endoplasmic reticulum
JUNP479_2186	COG0742	ribosomal rna small subunit methyltransferase
JUNP479_2191	COG2249	NAD(P)H dehydrogenase (quinone) activity
JUNP479_2192	COG0583	DNA-binding transcription factor activity
JUNP479_2193	COG4221	oxidoreductase activity
JUNP479_2196	COG1770	oligopeptidase
JUNP479_2199	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JUNP479_2201	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JUNP479_2203	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JUNP479_2205	COG2095	MarC family integral membrane protein
JUNP479_2207	COG1301	dicarboxylic acid transport
JUNP479_2212	COG3714	YhhN family
JUNP479_2222	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JUNP479_2223	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JUNP479_2224	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JUNP479_2225	COG0049	tRNA binding
JUNP479_2226	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JUNP479_2227	COG2168	tRNA wobble position uridine thiolation
JUNP479_2228	COG2923	Belongs to the DsrF TusC family
JUNP479_2229	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JUNP479_2231	COG2964	Protein conserved in bacteria
JUNP479_2232	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JUNP479_2233	COG0085	RNA polymerase activity
JUNP479_2234	COG0222	ribosome binding
JUNP479_2235	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JUNP479_2236	COG0081	regulation of translation
JUNP479_2237	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JUNP479_2238	COG0250	Participates in transcription elongation, termination and antitermination
JUNP479_2241	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JUNP479_2246	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JUNP479_2247	COG0569	domain protein
JUNP479_2248	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JUNP479_2249	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JUNP479_2251	COG4191	Histidine kinase
JUNP479_2251	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_2252	COG3005	denitrification pathway
JUNP479_2253	COG0243	molybdopterin cofactor binding
JUNP479_2259	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
JUNP479_2262	COG2204	response regulator
JUNP479_2264	COG2205	protein histidine kinase activity
JUNP479_2267	COG5413	integral membrane protein
JUNP479_2269	COG1522	sequence-specific DNA binding
JUNP479_2270	COG2502	aspartate--ammonia ligase
JUNP479_2271	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JUNP479_2272	COG0542	response to heat
JUNP479_2274	COG0564	pseudouridine synthase activity
JUNP479_2275	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JUNP479_2279	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JUNP479_2280	COG0463	Glycosyl transferase, family 2
JUNP479_2281	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JUNP479_2281	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JUNP479_2282	COG0726	polysaccharide deacetylase
JUNP479_2283	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JUNP479_2284	COG2076	Multidrug Resistance protein
JUNP479_2285	COG2076	Multidrug Resistance protein
JUNP479_2286	COG0446	pyridine nucleotide-disulphide oxidoreductase
JUNP479_2288	COG3681	Belongs to the UPF0597 family
JUNP479_2290	COG4974	Belongs to the 'phage' integrase family
JUNP479_2306	COG2176	DNA-directed DNA polymerase activity
JUNP479_2306	COG5002	protein histidine kinase activity
JUNP479_2311	COG4695	Portal protein
JUNP479_2322	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JUNP479_2337	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JUNP479_2338	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JUNP479_2339	COG1979	alcohol dehydrogenase
JUNP479_2340	COG2207	Transcriptional regulator
JUNP479_2341	COG3040	lipid binding
JUNP479_2344	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
JUNP479_2348	COG0583	DNA-binding transcription factor activity
JUNP479_2349	COG0688	phosphatidylethanolamine metabolic process
JUNP479_2352	COG0540	Belongs to the ATCase OTCase family
JUNP479_2353	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
JUNP479_2354	COG1438	arginine binding
JUNP479_2355	COG1288	antiporter activity
JUNP479_2356	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JUNP479_2363	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JUNP479_2365	COG3078	GTPase activator activity
JUNP479_2368	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JUNP479_2370	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JUNP479_2371	COG0408	coproporphyrinogen oxidase activity
JUNP479_2372	COG0009	L-threonylcarbamoyladenylate synthase
JUNP479_2374	COG0551	DNA topoisomerase type I activity
JUNP479_2375	COG2922	Belongs to the Smg family
JUNP479_2376	COG0758	DNA mediated transformation
JUNP479_2377	COG1652	LysM domain
JUNP479_2378	COG0242	peptide deformylase activity
JUNP479_2379	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JUNP479_2380	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JUNP479_2380	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JUNP479_2381	COG0569	domain protein
JUNP479_2382	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JUNP479_2383	COG1217	gtp-binding protein TYPA
JUNP479_2385	COG0174	glutamine synthetase
JUNP479_2389	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JUNP479_2394	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JUNP479_2395	COG0583	DNA-binding transcription factor activity
JUNP479_2399	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JUNP479_2400	COG1396	sequence-specific DNA binding
JUNP479_2401	COG1012	belongs to the aldehyde dehydrogenase family
JUNP479_2403	COG2962	Rard protein
JUNP479_2405	COG2391	methyltransferase activity
JUNP479_2409	COG1309	transcriptional regulator
JUNP479_2412	COG0129	dihydroxy-acid dehydratase activity
JUNP479_2414	COG3978	acetolactate synthase activity
JUNP479_2416	COG0606	chelatase, subunit chli
JUNP479_2417	COG0204	Acyl-transferase
JUNP479_2418	COG0204	Acyl-transferase
JUNP479_2419	COG1683	Conserved Protein
JUNP479_2421	COG1335	isochorismatase
JUNP479_2423	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JUNP479_2424	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JUNP479_2426	COG3084	Protein conserved in bacteria
JUNP479_2427	COG5001	Diguanylate cyclase
JUNP479_2427	COG2203	Gaf domain
JUNP479_2427	COG4251	negative regulation of phosphorylation
JUNP479_2427	COG3706	GGDEF domain
JUNP479_2430	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JUNP479_2431	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JUNP479_2432	COG1561	YicC-like family, N-terminal region
JUNP479_2433	COG0583	DNA-binding transcription factor activity
JUNP479_2436	COG0583	DNA-binding transcription factor activity
JUNP479_2444	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JUNP479_2445	COG0385	Bile acid
JUNP479_2446	COG0531	amino acid
JUNP479_2447	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JUNP479_2448	COG0531	amino acid
JUNP479_2449	COG2731	YhcH YjgK YiaL family protein
JUNP479_2450	COG3250	beta-galactosidase activity
JUNP479_2451	COG1609	Transcriptional regulator
JUNP479_2458	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JUNP479_2459	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JUNP479_2459	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JUNP479_2460	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JUNP479_2461	COG3074	FtsZ-dependent cytokinesis
JUNP479_2463	COG1045	serine acetyltransferase
JUNP479_2465	COG0745	RESPONSE REGULATOR receiver
JUNP479_2466	COG2205	protein histidine kinase activity
JUNP479_2467	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JUNP479_2468	COG0534	Mate efflux family protein
JUNP479_2471	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JUNP479_2472	COG2937	Belongs to the GPAT DAPAT family
JUNP479_2473	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JUNP479_2474	COG3161	chorismate lyase activity
JUNP479_2475	COG1580	Controls the rotational direction of flagella during chemotaxis
JUNP479_2479	COG0604	alcohol dehydrogenase
JUNP479_2480	COG1609	Transcriptional regulator
JUNP479_2481	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_2484	COG1519	Transferase
JUNP479_2485	COG0859	PFAM glycosyl transferase family 9
JUNP479_2486	COG0463	Glycosyl transferase, family 2
JUNP479_2487	COG0859	PFAM glycosyl transferase family 9
JUNP479_2488	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JUNP479_2489	COG2990	Protein conserved in bacteria
JUNP479_2490	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JUNP479_2492	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JUNP479_2493	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JUNP479_2494	COG2003	Belongs to the UPF0758 family
JUNP479_2495	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JUNP479_2496	COG0756	dUTP diphosphatase activity
JUNP479_2497	COG1309	transcriptional regulator
JUNP479_2498	COG0668	transmembrane transport
JUNP479_2499	COG0166	Belongs to the GPI family
JUNP479_2500	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JUNP479_2510	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JUNP479_2511	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JUNP479_2512	COG1739	Uncharacterized protein family UPF0029
JUNP479_2513	COG0006	proline dipeptidase activity
JUNP479_2514	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JUNP479_2515	COG1024	Enoyl-CoA hydratase
JUNP479_2515	COG1250	3-hydroxyacyl-CoA dehydrogenase
JUNP479_2516	COG0183	Belongs to the thiolase family
JUNP479_2521	COG0425	Belongs to the sulfur carrier protein TusA family
JUNP479_2522	COG0251	oxidation-reduction process
JUNP479_2523	COG2885	chlorophyll binding
JUNP479_2524	COG0840	transmembrane signaling receptor activity
JUNP479_2525	COG2818	Glycosylase
JUNP479_2526	COG0752	glycyl-tRNA synthetase alpha subunit
JUNP479_2527	COG0751	glycine-tRNA ligase activity
JUNP479_2530	COG2203	Gaf domain
JUNP479_2530	COG3706	GGDEF domain
JUNP479_2530	COG4251	negative regulation of phosphorylation
JUNP479_2530	COG5001	Diguanylate cyclase
JUNP479_2533	COG0840	transmembrane signaling receptor activity
JUNP479_2541	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JUNP479_2543	COG2960	long-chain fatty acid transporting porin activity
JUNP479_2544	COG5002	protein histidine kinase activity
JUNP479_2544	COG5001	Diguanylate cyclase
JUNP479_2546	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JUNP479_2549	COG3118	belongs to the thioredoxin family
JUNP479_2550	COG0513	Belongs to the DEAD box helicase family
JUNP479_2551	COG0248	Ppx GppA phosphatase
JUNP479_2553	COG0742	ribosomal rna small subunit methyltransferase
JUNP479_2554	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_2557	COG3469	chitinase activity
JUNP479_2559	COG0084	hydrolase, TatD family'
JUNP479_2560	COG0805	protein transport
JUNP479_2561	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JUNP479_2563	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JUNP479_2564	COG3165	ubiquinone biosynthetic process from chorismate
JUNP479_2565	COG2226	methyltransferase
JUNP479_2566	COG0402	S-adenosylhomocysteine deaminase activity
JUNP479_2567	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JUNP479_2575	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JUNP479_2576	COG0848	biopolymer transport protein
JUNP479_2577	COG0811	peptide transport
JUNP479_2578	COG0811	peptide transport
JUNP479_2580	COG2771	luxR family
JUNP479_2581	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JUNP479_2582	COG1349	DNA-binding transcription factor activity
JUNP479_2583	COG0745	RESPONSE REGULATOR receiver
JUNP479_2584	COG2205	protein histidine kinase activity
JUNP479_2587	COG4452	Inner membrane protein CreD
JUNP479_2590	COG0297	glycogen (starch) synthase activity
JUNP479_2590	COG0438	transferase activity, transferring glycosyl groups
JUNP479_2599	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JUNP479_2600	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JUNP479_2601	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JUNP479_2602	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JUNP479_2603	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JUNP479_2604	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JUNP479_2605	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JUNP479_2606	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JUNP479_2608	COG0356	it plays a direct role in the translocation of protons across the membrane
JUNP479_2610	COG1475	DNA binding
JUNP479_2611	COG1192	Involved in chromosome partitioning
JUNP479_2612	COG0357	Ribosomal RNA small subunit methyltransferase G
JUNP479_2613	COG0445	tRNA wobble uridine modification
JUNP479_2614	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JUNP479_2616	COG4615	Cyclic peptide transporter
JUNP479_2617	COG1120	ATPase activity
JUNP479_2618	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JUNP479_2620	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JUNP479_2621	COG0706	membrane insertase activity
JUNP479_2622	COG0594	ribonuclease P activity
JUNP479_2623	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JUNP479_2624	COG1126	abc transporter atp-binding protein
JUNP479_2627	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JUNP479_2628	COG0592	DNA-directed DNA polymerase activity
JUNP479_2633	COG2378	regulation of single-species biofilm formation
JUNP479_2635	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JUNP479_2636	COG0071	Belongs to the small heat shock protein (HSP20) family
JUNP479_2637	COG0071	Belongs to the small heat shock protein (HSP20) family
JUNP479_2638	COG3977	Valine--pyruvate aminotransferase
JUNP479_2640	COG2814	Major facilitator Superfamily
JUNP479_2641	COG0745	RESPONSE REGULATOR receiver
JUNP479_2642	COG2205	protein histidine kinase activity
JUNP479_2647	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JUNP479_2648	COG4191	Histidine kinase
JUNP479_2648	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_2649	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JUNP479_2650	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_2651	COG1309	transcriptional regulator
JUNP479_2658	COG0561	phosphatase activity
JUNP479_2659	COG2267	carboxylic ester hydrolase activity
JUNP479_2660	COG0110	maltose O-acetyltransferase activity
JUNP479_2661	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JUNP479_2662	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JUNP479_2663	COG1758	RNA polymerase activity
JUNP479_2665	COG0859	PFAM glycosyl transferase family 9
JUNP479_2666	COG3642	lipopolysaccharide core region biosynthetic process
JUNP479_2674	COG0589	response to stress
JUNP479_2675	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JUNP479_2676	COG1528	Iron-storage protein
JUNP479_2677	COG2081	HI0933 family
JUNP479_2678	COG3275	phosphorelay sensor kinase activity
JUNP479_2679	COG3279	Response regulator of the LytR AlgR family
JUNP479_2680	COG2223	nitrite transmembrane transporter activity
JUNP479_2681	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JUNP479_2682	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JUNP479_2685	COG0583	DNA-binding transcription factor activity
JUNP479_2686	COG4206	TonB-dependent receptor
JUNP479_2687	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JUNP479_2693	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JUNP479_2694	COG2166	iron-sulfur cluster assembly
JUNP479_2695	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JUNP479_2698	COG3245	cytochrome
JUNP479_2699	COG1063	alcohol dehydrogenase
JUNP479_2700	COG0156	8-amino-7-oxononanoate synthase activity
JUNP479_2702	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JUNP479_2706	COG3306	glycosyltransferase involved in LPS biosynthesis
JUNP479_2713	COG1280	lysine exporter protein (LysE YggA)
JUNP479_2726	COG0210	DNA helicase
JUNP479_2727	COG1744	ABC transporter substrate-binding protein PnrA-like
JUNP479_2728	COG3845	ABC transporter
JUNP479_2729	COG4603	Belongs to the binding-protein-dependent transport system permease family
JUNP479_2730	COG1079	Belongs to the binding-protein-dependent transport system permease family
JUNP479_2731	COG2239	Acts as a magnesium transporter
JUNP479_2733	COG3177	Filamentation induced by cAMP protein fic
JUNP479_2734	COG1648	precorrin-2 dehydrogenase activity
JUNP479_2734	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JUNP479_2735	COG2116	formate transmembrane transporter activity
JUNP479_2737	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JUNP479_2738	COG0842	Transport permease protein
JUNP479_2739	COG0842	Transport permease protein
JUNP479_2740	COG1131	(ABC) transporter
JUNP479_2741	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_2742	COG1309	transcriptional regulator
JUNP479_2743	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JUNP479_2744	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JUNP479_2748	COG1595	DNA-templated transcription, initiation
JUNP479_2750	COG1968	undecaprenyl-diphosphatase activity
JUNP479_2751	COG2017	converts alpha-aldose to the beta-anomer
JUNP479_2752	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JUNP479_2753	COG1085	galactose-1-phosphate uridylyltransferase
JUNP479_2754	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JUNP479_2755	COG1609	Transcriptional regulator
JUNP479_2756	COG3250	beta-galactosidase activity
JUNP479_2761	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JUNP479_2764	COG0366	Alpha amylase catalytic
JUNP479_2767	COG0443	Heat shock 70 kDa protein
JUNP479_2768	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JUNP479_2769	COG3045	CreA protein
JUNP479_2773	COG0174	glutamine synthetase
JUNP479_2778	COG3842	ATPase activity
JUNP479_2779	COG1176	ABC-type spermidine putrescine transport system, permease component I
JUNP479_2780	COG1177	transmembrane transport
JUNP479_2781	COG2258	MOSC domain
JUNP479_2784	COG2050	protein possibly involved in aromatic compounds catabolism
JUNP479_2785	COG0514	ATP-dependent DNA helicase (RecQ)
JUNP479_2787	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JUNP479_2789	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JUNP479_2790	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JUNP479_2794	COG0254	rRNA binding
JUNP479_2795	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JUNP479_2797	COG0702	epimerase
JUNP479_2798	COG0814	amino acid
JUNP479_2799	COG0281	malic enzyme
JUNP479_2800	COG1295	ribonuclease BN
JUNP479_2801	COG1490	D-aminoacyl-tRNA deacylase activity
JUNP479_2802	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JUNP479_2803	COG0456	acetyltransferase
JUNP479_2805	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JUNP479_2806	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JUNP479_2807	COG2610	gluconate transmembrane transporter activity
JUNP479_2808	COG3265	gluconokinase activity
JUNP479_2810	COG0800	Aldolase
JUNP479_2813	COG1609	Transcriptional regulator
JUNP479_2815	COG4942	peptidase
JUNP479_2816	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JUNP479_2817	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JUNP479_2818	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JUNP479_2819	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JUNP479_2820	COG0316	Belongs to the HesB IscA family
JUNP479_2820	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JUNP479_2821	COG1040	competence protein
JUNP479_2822	COG0596	Alpha beta hydrolase
JUNP479_2826	COG2183	response to ionizing radiation
JUNP479_2827	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JUNP479_2831	COG0051	transcription antitermination factor activity, RNA binding
JUNP479_2832	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JUNP479_2833	COG0088	Forms part of the polypeptide exit tunnel
JUNP479_2834	COG0089	rRNA binding
JUNP479_2835	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JUNP479_2836	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JUNP479_2837	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JUNP479_2838	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JUNP479_2839	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JUNP479_2840	COG0255	Belongs to the universal ribosomal protein uL29 family
JUNP479_2841	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JUNP479_2842	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JUNP479_2843	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JUNP479_2844	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JUNP479_2845	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JUNP479_2846	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JUNP479_2847	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JUNP479_2848	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JUNP479_2849	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JUNP479_2850	COG1841	ribosomal large subunit assembly
JUNP479_2851	COG0200	Binds to the 23S rRNA
JUNP479_2852	COG0201	protein transport
JUNP479_2853	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JUNP479_2854	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JUNP479_2855	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JUNP479_2856	COG0202	RNA polymerase activity
JUNP479_2857	COG0203	ribosomal protein L17
JUNP479_2864	COG4771	TonB-dependent receptor
JUNP479_2865	COG3706	GGDEF domain
JUNP479_2869	COG0583	DNA-binding transcription factor activity
JUNP479_2871	COG1741	Belongs to the pirin family
JUNP479_2872	COG2259	Doxx family
JUNP479_2873	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JUNP479_2874	COG1074	ATP-dependent DNA helicase activity
JUNP479_2875	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JUNP479_2877	COG2199	diguanylate cyclase activity
JUNP479_2877	COG2203	Gaf domain
JUNP479_2879	COG3069	C4-dicarboxylate transmembrane transporter activity
JUNP479_2884	COG1175	transmembrane transport
JUNP479_2886	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JUNP479_2892	COG2873	o-acetylhomoserine
JUNP479_2897	COG5380	lipid catabolic process
JUNP479_2898	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JUNP479_2899	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JUNP479_2904	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JUNP479_2904	COG0456	acetyltransferase
JUNP479_2905	COG0454	-acetyltransferase
JUNP479_2905	COG0456	acetyltransferase
JUNP479_2910	COG2927	DNA polymerase III (CHI subunit)
JUNP479_2911	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JUNP479_2912	COG0795	lipopolysaccharide-transporting ATPase activity
JUNP479_2913	COG0795	lipopolysaccharide-transporting ATPase activity
JUNP479_2916	COG0582	viral genome integration into host DNA
JUNP479_2936	COG1494	fructose-1,6-bisphosphatase
JUNP479_2939	COG2959	enzyme of heme biosynthesis
JUNP479_2941	COG0181	hydroxymethylbilane synthase activity
JUNP479_2943	COG3072	Adenylate cyclase
JUNP479_2944	COG0400	carboxylic ester hydrolase activity
JUNP479_2945	COG1965	Belongs to the frataxin family
JUNP479_2947	COG0019	diaminopimelate decarboxylase activity
JUNP479_2948	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JUNP479_2951	COG1011	Hydrolase
JUNP479_2952	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JUNP479_2954	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JUNP479_2956	COG0312	modulator of DNA gyrase
JUNP479_2957	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JUNP479_2958	COG5007	Belongs to the BolA IbaG family
JUNP479_2960	COG2854	intermembrane phospholipid transfer
JUNP479_2961	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JUNP479_2962	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JUNP479_2963	COG1127	ABC transporter
JUNP479_2964	COG0517	IMP dehydrogenase activity
JUNP479_2964	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JUNP479_2965	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JUNP479_2967	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JUNP479_2968	COG1137	ATPase activity
JUNP479_2969	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JUNP479_2971	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_2972	COG1660	Displays ATPase and GTPase activities
JUNP479_2973	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_2974	COG3711	transcriptional antiterminator
JUNP479_2974	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_2977	COG3964	amidohydrolase
JUNP479_2983	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JUNP479_2984	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JUNP479_2986	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JUNP479_2987	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JUNP479_2988	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JUNP479_2989	COG0723	plastoquinol--plastocyanin reductase activity
JUNP479_2990	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JUNP479_2991	COG2857	Cytochrome c1
JUNP479_2992	COG0625	glutathione transferase activity
JUNP479_2993	COG2969	positive regulation of protein catabolic process
JUNP479_2995	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JUNP479_2996	COG0792	nuclease activity
JUNP479_2997	COG3107	peptidoglycan biosynthetic process
JUNP479_2998	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JUNP479_3007	COG1677	Flagellar hook-basal body complex protein FliE
JUNP479_3009	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JUNP479_3014	COG2747	anti-sigma28 factor FlgM
JUNP479_3016	COG1815	bacterial-type flagellum-dependent cell motility
JUNP479_3021	COG4786	Flagellar basal body rod
JUNP479_3022	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
JUNP479_3023	COG1706	bacterial-type flagellum-dependent cell motility
JUNP479_3025	COG4786	Flagellar basal body rod
JUNP479_3025	COG1256	bacterial-type flagellum assembly
JUNP479_3026	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JUNP479_3030	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JUNP479_3031	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JUNP479_3036	COG1191	sigma factor activity
JUNP479_3037	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JUNP479_3038	COG1360	Flagellar Motor Protein
JUNP479_3039	COG1388	LysM domain
JUNP479_3039	COG0741	lytic transglycosylase activity
JUNP479_3041	COG2001	Belongs to the MraZ family
JUNP479_3042	COG0275	rRNA processing
JUNP479_3043	COG3116	cell division
JUNP479_3044	COG0768	penicillin binding
JUNP479_3045	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JUNP479_3046	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JUNP479_3047	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JUNP479_3048	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JUNP479_3049	COG0772	Belongs to the SEDS family
JUNP479_3050	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JUNP479_3051	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JUNP479_3053	COG0849	cell division
JUNP479_3054	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JUNP479_3055	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JUNP479_3056	COG0739	heme binding
JUNP479_3057	COG0653	protein targeting
JUNP479_3058	COG0494	nUDIX hydrolase
JUNP479_3059	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JUNP479_3060	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JUNP479_3063	COG1459	type II secretion system
JUNP479_3064	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JUNP479_3069	COG2186	Transcriptional regulator
JUNP479_3070	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JUNP479_3071	COG0508	dehydrogenase complex catalyzes the overall conversion of
JUNP479_3072	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JUNP479_3074	COG0840	transmembrane signaling receptor activity
JUNP479_3075	COG1752	Esterase of the alpha-beta hydrolase superfamily
JUNP479_3076	COG1049	propionate catabolic process, 2-methylcitrate cycle
JUNP479_3078	COG2200	EAL domain
JUNP479_3080	COG0523	cobalamin synthesis protein
JUNP479_3081	COG0477	Major facilitator Superfamily
JUNP479_3083	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JUNP479_3084	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JUNP479_3089	COG3314	Sporulation integral membrane protein YlbJ
JUNP479_3094	COG0165	Argininosuccinate lyase
JUNP479_3095	COG0137	argininosuccinate synthase activity
JUNP479_3097	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JUNP479_3098	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JUNP479_3100	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JUNP479_3105	COG0583	DNA-binding transcription factor activity
JUNP479_3109	COG1380	Effector of murein hydrolase LrgA
JUNP479_3110	COG1346	cytolysis
JUNP479_3112	COG4667	esterase of the alpha-beta hydrolase superfamily
JUNP479_3113	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JUNP479_3114	COG1546	Belongs to the CinA family
JUNP479_3115	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JUNP479_3117	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JUNP479_3118	COG0527	aspartate kinase activity
JUNP479_3119	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JUNP479_3126	COG1686	Belongs to the peptidase S11 family
JUNP479_3127	COG0586	Pfam SNARE associated Golgi protein
JUNP479_3128	COG1253	flavin adenine dinucleotide binding
JUNP479_3129	COG0252	asparaginase activity
JUNP479_3133	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_3133	COG1263	PTS System
JUNP479_3134	COG0366	Alpha amylase catalytic
JUNP479_3135	COG0110	maltose O-acetyltransferase activity
JUNP479_3137	COG0564	pseudouridine synthase activity
JUNP479_3138	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JUNP479_3145	COG2926	Belongs to the UPF0265 family
JUNP479_3147	COG0561	phosphatase activity
JUNP479_3149	COG1546	Belongs to the CinA family
JUNP479_3149	COG1058	Belongs to the CinA family
JUNP479_3150	COG1418	mRNA catabolic process
JUNP479_3151	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
JUNP479_3153	COG1522	sequence-specific DNA binding
JUNP479_3154	COG1368	sulfuric ester hydrolase activity
JUNP479_3158	COG1285	pathogenesis
JUNP479_3162	COG4221	oxidoreductase activity
JUNP479_3165	COG1979	alcohol dehydrogenase
JUNP479_3166	COG1803	Methylglyoxal synthase
JUNP479_3170	COG1444	tRNA N-acetyltransferase activity
JUNP479_3172	COG0835	chemotaxis
JUNP479_3172	COG0784	Response regulator, receiver
JUNP479_3173	COG2949	membrane
JUNP479_3174	COG3291	Pkd domain containing protein
JUNP479_3175	COG0318	PFAM AMP-dependent synthetase and ligase
JUNP479_3177	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JUNP479_3178	COG0596	Alpha beta hydrolase
JUNP479_3179	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JUNP479_3180	COG1169	isochorismate synthase
JUNP479_3181	COG1575	Belongs to the MenA family. Type 1 subfamily
JUNP479_3185	COG0513	Belongs to the DEAD box helicase family
JUNP479_3187	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JUNP479_3188	COG1988	membrane-bound metal-dependent
JUNP479_3191	COG1671	Belongs to the UPF0178 family
JUNP479_3196	COG3722	fumarate hydratase activity
JUNP479_3197	COG0246	Mannitol dehydrogenase
JUNP479_3198	COG2213	PTS system mannitol-specific
JUNP479_3198	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_3199	COG1560	Kdo2-lipid A biosynthetic process
JUNP479_3200	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JUNP479_3200	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JUNP479_3201	COG1538	Outer membrane efflux protein
JUNP479_3202	COG0494	nUDIX hydrolase
JUNP479_3203	COG3151	Protein conserved in bacteria
JUNP479_3205	COG3150	esterase
JUNP479_3206	COG1051	belongs to the nudix hydrolase family
JUNP479_3209	COG1566	PFAM secretion protein HlyD family protein
JUNP479_3210	COG1289	transmembrane transporter activity
JUNP479_3211	COG0187	DNA topoisomerase II activity
JUNP479_3214	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JUNP479_3219	COG3104	oligopeptide transport
JUNP479_3225	COG2084	Dehydrogenase
JUNP479_3226	COG0583	DNA-binding transcription factor activity
JUNP479_3227	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JUNP479_3231	COG0204	Acyl-transferase
JUNP479_3232	COG1842	Phage shock protein A
JUNP479_3235	COG2827	Endonuclease containing a URI domain
JUNP479_3238	COG1573	uracil-dna glycosylase
JUNP479_3239	COG0697	spore germination
JUNP479_3241	COG0583	DNA-binding transcription factor activity
JUNP479_3242	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JUNP479_3243	COG1121	(ABC) transporter
JUNP479_3244	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JUNP479_3248	COG0739	heme binding
JUNP479_3250	COG3068	Protein conserved in bacteria
JUNP479_3254	COG0617	tRNA 3'-terminal CCA addition
JUNP479_3255	COG1194	a g-specific adenine glycosylase
JUNP479_3256	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JUNP479_3259	COG3240	lipase activity
JUNP479_3261	COG3706	GGDEF domain
JUNP479_3262	COG0557	exoribonuclease II activity
JUNP479_3263	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JUNP479_3265	COG2153	protein acetylation
JUNP479_3266	COG0513	Belongs to the DEAD box helicase family
JUNP479_3267	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JUNP479_3272	COG0735	belongs to the Fur family
JUNP479_3273	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JUNP479_3274	COG0840	transmembrane signaling receptor activity
JUNP479_3276	COG4166	transmembrane transport
JUNP479_3278	COG0110	maltose O-acetyltransferase activity
JUNP479_3280	COG1024	Enoyl-CoA hydratase
JUNP479_3283	COG4221	oxidoreductase activity
JUNP479_3284	COG0442	prolyl-tRNA aminoacylation
JUNP479_3286	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JUNP479_3287	COG3009	Protein conserved in bacteria
JUNP479_3288	COG3008	intermembrane lipid transfer
JUNP479_3288	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JUNP479_3289	COG2995	paraquat-inducible protein a
JUNP479_3291	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JUNP479_3293	COG5001	Diguanylate cyclase
JUNP479_3293	COG4251	negative regulation of phosphorylation
JUNP479_3293	COG3706	GGDEF domain
JUNP479_3293	COG2203	Gaf domain
JUNP479_3294	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
JUNP479_3297	COG2771	luxR family
JUNP479_3299	COG0840	transmembrane signaling receptor activity
JUNP479_3300	COG0632	four-way junction helicase activity
JUNP479_3301	COG2255	four-way junction helicase activity
JUNP479_3303	COG1294	oxidase, subunit
JUNP479_3304	COG3790	cyd operon protein YbgE
JUNP479_3305	COG0824	Thioesterase
JUNP479_3306	COG0811	peptide transport
JUNP479_3309	COG0823	Involved in the tonB-independent uptake of proteins
JUNP479_3310	COG2885	chlorophyll binding
JUNP479_3312	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JUNP479_3326	COG0733	neurotransmitter:sodium symporter activity
JUNP479_3328	COG0733	neurotransmitter:sodium symporter activity
JUNP479_3331	COG0561	phosphatase activity
JUNP479_3336	COG1051	belongs to the nudix hydrolase family
JUNP479_3340	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JUNP479_3341	COG1640	4-alpha-glucanotransferase
JUNP479_3343	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JUNP479_3345	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JUNP479_3346	COG0840	transmembrane signaling receptor activity
JUNP479_3347	COG1585	Membrane protein implicated in regulation of membrane protease activity
JUNP479_3348	COG0330	HflC and HflK could
JUNP479_3349	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JUNP479_3349	COG1648	precorrin-2 dehydrogenase activity
JUNP479_3350	COG0175	sulfate reduction
JUNP479_3351	COG2895	sulfate adenylyltransferase (ATP) activity
JUNP479_3352	COG0529	Catalyzes the synthesis of activated sulfate
JUNP479_3355	COG0840	transmembrane signaling receptor activity
JUNP479_3359	COG1136	(ABC) transporter
JUNP479_3362	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JUNP479_3365	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JUNP479_3366	COG0784	Response regulator, receiver
JUNP479_3366	COG3437	response regulator, receiver
JUNP479_3368	COG2076	Multidrug Resistance protein
JUNP479_3369	COG2076	Multidrug Resistance protein
JUNP479_3370	COG0346	lactoylglutathione lyase activity
JUNP479_3371	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JUNP479_3372	COG1643	Atp-dependent helicase
JUNP479_3374	COG1489	DNA binding
JUNP479_3375	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JUNP479_3376	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JUNP479_3378	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JUNP479_3379	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JUNP479_3380	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JUNP479_3382	COG1823	symporter activity
JUNP479_3386	COG1924	4 iron, 4 sulfur cluster binding
JUNP479_3387	COG1775	2-hydroxyglutaryl-CoA dehydratase, D-component
JUNP479_3388	COG0842	Transport permease protein
JUNP479_3389	COG1131	(ABC) transporter
JUNP479_3392	COG0163	prenyltransferase activity
JUNP479_3393	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JUNP479_3394	COG0671	phosphoesterase, PA-phosphatase related
JUNP479_3395	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JUNP479_3396	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JUNP479_3397	COG1151	hydroxylamine reductase activity
JUNP479_3398	COG0783	Belongs to the Dps family
JUNP479_3399	COG3023	N-Acetylmuramoyl-L-alanine amidase
JUNP479_3400	COG4807	Protein conserved in bacteria
JUNP479_3402	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JUNP479_3403	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JUNP479_3404	COG3956	TIGRFAM MazG family protein
JUNP479_3405	COG0504	CTP synthase activity
JUNP479_3406	COG0148	phosphopyruvate hydratase activity
JUNP479_3408	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JUNP479_3412	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JUNP479_3414	COG0488	(ABC) transporter
JUNP479_3418	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JUNP479_3421	COG1794	racemase activity, acting on amino acids and derivatives
JUNP479_3423	COG2731	YhcH YjgK YiaL family protein
JUNP479_3425	COG0668	transmembrane transport
JUNP479_3426	COG1376	ErfK ybiS ycfS ynhG family protein
JUNP479_3428	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JUNP479_3429	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JUNP479_3430	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JUNP479_3432	COG0585	pseudouridine synthase activity
JUNP479_3433	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JUNP479_3434	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JUNP479_3435	COG1238	metal cluster binding
JUNP479_3436	COG1388	LysM domain
JUNP479_3436	COG4942	peptidase
JUNP479_3438	COG1902	pentaerythritol trinitrate reductase activity
JUNP479_3440	COG2852	Protein conserved in bacteria
JUNP479_3442	COG2957	Belongs to the agmatine deiminase family
JUNP479_3443	COG0154	amidase activity
JUNP479_3447	COG0471	metal ion transport
JUNP479_3449	COG0513	Belongs to the DEAD box helicase family
JUNP479_3450	COG2199	diguanylate cyclase activity
JUNP479_3450	COG2203	Gaf domain
JUNP479_3452	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
JUNP479_3460	COG2816	NAD+ diphosphatase activity
JUNP479_3462	COG4191	Histidine kinase
JUNP479_3467	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JUNP479_3470	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JUNP479_3471	COG4991	sh3 domain protein
JUNP479_3474	COG2816	NAD+ diphosphatase activity
JUNP479_3475	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JUNP479_3476	COG1940	carbohydrate kinase activity
JUNP479_3477	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JUNP479_3478	COG0126	phosphoglycerate kinase activity
JUNP479_3480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_3489	COG0354	folic acid binding
JUNP479_3490	COG2938	An FAD assembly protein, which accelerates covalent attachment of the cofactor into other proteins. Plays an essential role in the assembly of succinate dehydrogenase (SDH, respiratory complex II), an enzyme complex that is a component of both the tricarboxylic acid cycle and the electron transport chain, and which couples the oxidation of succinate to fumarate with the reduction of ubiquinone (coenzyme Q) to ubiquinol. Required for flavinylation (covalent attachment of FAD) of the flavoprotein subunit SdhA of SDH
JUNP479_3492	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JUNP479_3493	COG1595	DNA-templated transcription, initiation
JUNP479_3494	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
JUNP479_3495	COG3026	antisigma factor binding
JUNP479_3497	COG0481	GTPase activity
JUNP479_3498	COG0681	Belongs to the peptidase S26 family
JUNP479_3501	COG1381	Involved in DNA repair and RecF pathway recombination
JUNP479_3502	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JUNP479_3503	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JUNP479_3504	COG1263	PTS System
JUNP479_3504	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_3506	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JUNP479_3507	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_3508	COG3716	PTS system mannose fructose sorbose family IID component
JUNP479_3510	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_3511	COG2222	sugar isomerase
JUNP479_3513	COG1349	DNA-binding transcription factor activity
JUNP479_3515	COG2350	Protein conserved in bacteria
JUNP479_3516	COG2917	probably involved in intracellular septation
JUNP479_3517	COG0076	glutamate decarboxylase activity
JUNP479_3518	COG1272	protein, Hemolysin III
JUNP479_3519	COG2985	domain, Protein
JUNP479_3519	COG0569	domain protein
JUNP479_3522	COG3300	MHYT domain
JUNP479_3522	COG5001	Diguanylate cyclase
JUNP479_3523	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JUNP479_3527	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JUNP479_3528	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_3529	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JUNP479_3530	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JUNP479_3535	COG2986	histidine ammonia-lyase
JUNP479_3537	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JUNP479_3540	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JUNP479_3547	COG2313	pseudouridylate synthase activity
JUNP479_3548	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JUNP479_3556	COG1765	OsmC-like protein
JUNP479_3559	COG3954	Phosphoribulokinase
JUNP479_3560	COG3089	Belongs to the UPF0270 family
JUNP479_3561	COG5001	Diguanylate cyclase
JUNP479_3561	COG4251	negative regulation of phosphorylation
JUNP479_3561	COG2203	Gaf domain
JUNP479_3561	COG3706	GGDEF domain
JUNP479_3562	COG0429	hydrolase of the alpha beta-hydrolase fold
JUNP479_3563	COG0784	Response regulator, receiver
JUNP479_3563	COG0835	chemotaxis
JUNP479_3565	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JUNP479_3566	COG1047	Peptidyl-prolyl cis-trans
JUNP479_3569	COG0545	Peptidyl-prolyl cis-trans isomerase
JUNP479_3570	COG2204	response regulator
JUNP479_3574	COG0737	Belongs to the 5'-nucleotidase family
JUNP479_3577	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JUNP479_3579	COG3340	Belongs to the peptidase S51 family
JUNP479_3580	COG1966	Carbon starvation protein
JUNP479_3582	COG3279	Response regulator of the LytR AlgR family
JUNP479_3583	COG3275	phosphorelay sensor kinase activity
JUNP479_3586	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JUNP479_3588	COG3721	Heme iron utilization protein
JUNP479_3589	COG0748	coenzyme F420 binding
JUNP479_3594	COG2771	luxR family
JUNP479_3597	COG3501	Rhs element vgr protein
JUNP479_3598	COG3501	Rhs element vgr protein
JUNP479_3602	COG3179	chitinase
JUNP479_3604	COG2814	Major facilitator Superfamily
JUNP479_3606	COG3655	Transcriptional regulator
JUNP479_3608	COG5002	protein histidine kinase activity
JUNP479_3608	COG0784	Response regulator, receiver
JUNP479_3608	COG2205	protein histidine kinase activity
JUNP479_3611	COG3397	chitin binding
JUNP479_3620	COG0835	chemotaxis
JUNP479_3620	COG0784	Response regulator, receiver
JUNP479_3621	COG2755	lipolytic protein G-D-S-L family
JUNP479_3622	COG4181	ATPase activity
JUNP479_3623	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JUNP479_3624	COG1090	epimerase
JUNP479_3625	COG2200	EAL domain
JUNP479_3626	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JUNP479_3628	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JUNP479_3629	COG3171	Protein conserved in bacteria
JUNP479_3630	COG2066	Belongs to the glutaminase family
JUNP479_3631	COG2897	thiosulfate sulfurtransferase activity
JUNP479_3634	COG0521	Mo-molybdopterin cofactor biosynthetic process
JUNP479_3636	COG2966	Psort location CytoplasmicMembrane, score
JUNP479_3637	COG3610	response to peptide
JUNP479_3639	COG0175	sulfate reduction
JUNP479_3640	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JUNP479_3641	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JUNP479_3642	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JUNP479_3643	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
JUNP479_3646	COG0786	glutamate:sodium symporter activity
JUNP479_3647	COG0252	asparaginase activity
JUNP479_3648	COG3139	Protein of unknown function (DUF1315)
JUNP479_3652	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JUNP479_3653	COG0321	lipoyl(octanoyl) transferase activity
JUNP479_3654	COG2921	Belongs to the UPF0250 family
JUNP479_3655	COG1686	Belongs to the peptidase S11 family
JUNP479_3656	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JUNP479_3657	COG2951	lytic endotransglycosylase activity
JUNP479_3658	COG0772	Belongs to the SEDS family
JUNP479_3659	COG0768	penicillin binding
JUNP479_3660	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JUNP479_3661	COG0799	negative regulation of ribosome biogenesis
JUNP479_3662	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JUNP479_3665	COG0495	leucyl-tRNA aminoacylation
JUNP479_3666	COG2888	peptidyl-tyrosine sulfation
JUNP479_3668	COG0312	modulator of DNA gyrase
JUNP479_3670	COG0716	FMN binding
JUNP479_3671	COG4974	Belongs to the 'phage' integrase family
JUNP479_3672	COG1970	mechanosensitive ion channel activity
JUNP479_3675	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JUNP479_3676	COG4535	Mg2 and Co2 transporter CorC
JUNP479_3677	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JUNP479_3678	COG1702	phosphate starvation-inducible protein PhoH
JUNP479_3679	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JUNP479_3680	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JUNP479_3681	COG1335	isochorismatase
JUNP479_3683	COG3706	GGDEF domain
JUNP479_3688	COG3069	C4-dicarboxylate transmembrane transporter activity
JUNP479_3690	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JUNP479_3691	COG0583	DNA-binding transcription factor activity
JUNP479_3693	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JUNP479_3695	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JUNP479_3697	COG0516	GMP reductase activity
JUNP479_3702	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_3704	COG0318	PFAM AMP-dependent synthetase and ligase
JUNP479_3706	COG4106	trans-aconitate 2-methyltransferase activity
JUNP479_3707	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JUNP479_3710	COG3214	Protein conserved in bacteria
JUNP479_3712	COG2195	Cleaves the N-terminal amino acid of tripeptides
JUNP479_3713	COG0700	Nucleoside recognition
JUNP479_3714	COG3366	ferrous iron transmembrane transporter activity
JUNP479_3715	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JUNP479_3716	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JUNP479_3717	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JUNP479_3718	COG1053	succinate dehydrogenase
JUNP479_3720	COG0584	glycerophosphoryl diester phosphodiesterase
JUNP479_3721	COG3264	Mechanosensitive ion channel
JUNP479_3721	COG1511	domain protein
JUNP479_3723	COG0739	heme binding
JUNP479_3725	COG0583	DNA-binding transcription factor activity
JUNP479_3729	COG0583	DNA-binding transcription factor activity
JUNP479_3730	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JUNP479_3736	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JUNP479_3737	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JUNP479_3739	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JUNP479_3740	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JUNP479_3742	COG0180	Tryptophanyl-tRNA synthetase
JUNP479_3744	COG0512	Glutamine amidotransferase of anthranilate synthase
JUNP479_3745	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JUNP479_3747	COG1012	belongs to the aldehyde dehydrogenase family
JUNP479_3750	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JUNP479_3752	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JUNP479_3752	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JUNP479_3752	COG0674	pyruvate-flavodoxin oxidoreductase activity
JUNP479_3752	COG1013	pyruvate-flavodoxin oxidoreductase activity
JUNP479_3753	COG0366	Alpha amylase catalytic
JUNP479_3755	COG0657	acetylesterase activity
JUNP479_3756	COG3097	Belongs to the UPF0267 family
JUNP479_3758	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
JUNP479_3760	COG0490	domain, Protein
JUNP479_3760	COG0471	metal ion transport
JUNP479_3769	COG0583	DNA-binding transcription factor activity
JUNP479_3770	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JUNP479_3771	COG3842	ATPase activity
JUNP479_3772	COG1176	ABC-type spermidine putrescine transport system, permease component I
JUNP479_3773	COG1177	transmembrane transport
JUNP479_3774	COG1012	belongs to the aldehyde dehydrogenase family
JUNP479_3775	COG0012	GTP binding
JUNP479_3776	COG0193	aminoacyl-tRNA hydrolase activity
JUNP479_3777	COG0737	Belongs to the 5'-nucleotidase family
JUNP479_3778	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JUNP479_3780	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JUNP479_3781	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
JUNP479_3782	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JUNP479_3783	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JUNP479_3784	COG2890	protein-(glutamine-N5) methyltransferase activity
JUNP479_3786	COG2912	Transglutaminase-like superfamily
JUNP479_3787	COG2877	3-deoxy-8-phosphooctulonate synthase activity
JUNP479_3788	COG1301	dicarboxylic acid transport
JUNP479_3791	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JUNP479_3793	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JUNP479_3793	COG3408	Glycogen debranching enzyme
JUNP479_3795	COG1881	PFAM PEBP family protein
JUNP479_3796	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JUNP479_3799	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JUNP479_3802	COG0583	DNA-binding transcription factor activity
JUNP479_3803	COG1028	Short-chain dehydrogenase reductase Sdr
JUNP479_3804	COG0616	signal peptide processing
JUNP479_3805	COG2211	Major facilitator Superfamily
JUNP479_3806	COG2199	diguanylate cyclase activity
JUNP479_3806	COG2203	Gaf domain
JUNP479_3807	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JUNP479_3809	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_3810	COG0826	peptidase U32
JUNP479_3811	COG2203	Gaf domain
JUNP479_3811	COG2200	EAL domain
JUNP479_3811	COG2199	diguanylate cyclase activity
JUNP479_3816	COG2197	response regulator
JUNP479_3817	COG5002	protein histidine kinase activity
JUNP479_3817	COG2205	protein histidine kinase activity
JUNP479_3817	COG0784	Response regulator, receiver
JUNP479_3822	COG3724	N-succinylarginine dihydrolase activity
JUNP479_3827	COG2971	BadF BadG BcrA BcrD
JUNP479_3829	COG4608	Belongs to the ABC transporter superfamily
JUNP479_3830	COG0444	Belongs to the ABC transporter superfamily
JUNP479_3831	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JUNP479_3832	COG0601	transmembrane transport
JUNP479_3833	COG4166	transmembrane transport
JUNP479_3834	COG0784	Response regulator, receiver
JUNP479_3834	COG2205	protein histidine kinase activity
JUNP479_3842	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JUNP479_3843	COG1289	transmembrane transporter activity
JUNP479_3844	COG0303	'Molybdopterin
JUNP479_3845	COG0746	molybdenum cofactor guanylyltransferase activity
JUNP479_3846	COG1136	(ABC) transporter
JUNP479_3847	COG4662	Binding-protein-dependent transport system inner membrane component
JUNP479_3849	COG2204	response regulator
JUNP479_3850	COG3852	Histidine kinase
JUNP479_3852	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JUNP479_3859	COG3383	formate dehydrogenase (NAD+) activity
JUNP479_3859	COG3383	formate dehydrogenase (NAD+) activity
JUNP479_3860	COG0437	4 iron, 4 sulfur cluster binding
JUNP479_3862	COG0745	RESPONSE REGULATOR receiver
JUNP479_3863	COG0281	malic enzyme
JUNP479_3866	COG2233	PERMEase
JUNP479_3867	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JUNP479_3874	COG1737	Transcriptional regulator
JUNP479_3875	COG0469	pyruvate kinase activity
JUNP479_3877	COG1677	Flagellar hook-basal body complex protein FliE
JUNP479_3879	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JUNP479_3890	COG1684	flagellar biosynthetic protein fliR
JUNP479_3892	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JUNP479_3897	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
JUNP479_3898	COG2198	Histidine kinase
JUNP479_3898	COG0784	Response regulator, receiver
JUNP479_3898	COG0643	Histidine kinase
JUNP479_3899	COG2201	protein-glutamate methylesterase activity
JUNP479_3900	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JUNP479_3901	COG1360	Flagellar Motor Protein
JUNP479_3902	COG1192	Involved in chromosome partitioning
JUNP479_3904	COG0835	chemotaxis
JUNP479_3907	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JUNP479_3908	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JUNP479_3909	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JUNP479_3910	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JUNP479_3911	COG1138	Cytochrome C-type biogenesis protein
JUNP479_3912	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JUNP479_3914	COG4235	cytochrome complex assembly
JUNP479_3914	COG3088	subunit of a heme lyase
JUNP479_3917	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JUNP479_3918	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JUNP479_3920	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JUNP479_3921	COG1882	Formate acetyltransferase
JUNP479_3923	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JUNP479_3923	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JUNP479_3925	COG0259	pyridoxamine-phosphate oxidase activity
JUNP479_3926	COG0625	glutathione transferase activity
JUNP479_3930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JUNP479_3932	COG1397	ADP-ribosylglycohydrolase
JUNP479_3935	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JUNP479_3938	COG2850	peptidyl-arginine hydroxylation
JUNP479_3939	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JUNP479_3940	COG2915	High frequency lysogenization protein hflD homolog
JUNP479_3941	COG0482	sulfurtransferase activity
JUNP479_3942	COG1051	belongs to the nudix hydrolase family
JUNP479_3943	COG1187	pseudouridine synthase activity
JUNP479_3945	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_3948	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_3948	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_3948	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JUNP479_3952	COG1609	Transcriptional regulator
JUNP479_3953	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JUNP479_3953	COG1263	PTS System
JUNP479_3954	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JUNP479_3957	COG4792	protein secretion
JUNP479_3958	COG4791	protein targeting
JUNP479_3959	COG4794	Type iii secretion
JUNP479_3960	COG4790	Type iii secretion
JUNP479_3974	COG0457	Tetratricopeptide repeat
JUNP479_3992	COG1317	bacterial-type flagellum organization
JUNP479_3995	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JUNP479_3996	COG1960	acyl-CoA dehydrogenase activity
JUNP479_3999	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JUNP479_4001	COG3383	formate dehydrogenase (NAD+) activity
JUNP479_4002	COG1940	carbohydrate kinase activity
JUNP479_4003	COG0457	Tetratricopeptide repeat
JUNP479_4004	COG0477	Major facilitator Superfamily
JUNP479_4004	COG2814	Major facilitator Superfamily
JUNP479_4007	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JUNP479_4008	COG2867	negative regulation of translational initiation
JUNP479_4009	COG2914	Belongs to the UPF0125 (RnfH) family
JUNP479_4010	COG1473	amidohydrolase
JUNP479_4011	COG1960	acyl-CoA dehydrogenase activity
JUNP479_4013	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JUNP479_4014	COG0121	glutamine amidotransferase
JUNP479_4020	COG2197	response regulator
JUNP479_4021	COG3850	Histidine kinase
JUNP479_4022	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JUNP479_4023	COG1149	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_4023	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JUNP479_4025	COG0243	molybdopterin cofactor binding
JUNP479_4026	COG0437	4 iron, 4 sulfur cluster binding
JUNP479_4027	COG0348	domain, Protein
JUNP479_4029	COG3005	denitrification pathway
JUNP479_4030	COG0521	Mo-molybdopterin cofactor biosynthetic process
JUNP479_4031	COG0315	cyclic pyranopterin monophosphate synthase activity
JUNP479_4032	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JUNP479_4033	COG0314	molybdopterin synthase activity
JUNP479_4036	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JUNP479_4040	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JUNP479_4041	COG0303	'Molybdopterin
JUNP479_4042	COG0302	gtp cyclohydrolase
JUNP479_4043	COG0840	transmembrane signaling receptor activity
JUNP479_4044	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JUNP479_4046	COG0583	DNA-binding transcription factor activity
JUNP479_4052	COG2195	Cleaves the N-terminal amino acid of tripeptides
JUNP479_4053	COG1166	arginine decarboxylase activity
JUNP479_4058	COG0814	amino acid
JUNP479_4060	COG3681	Belongs to the UPF0597 family
JUNP479_4061	COG2964	Protein conserved in bacteria
JUNP479_4062	COG0406	alpha-ribazole phosphatase activity
JUNP479_4064	COG1879	ABC-type sugar transport system periplasmic component
JUNP479_4065	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JUNP479_4066	COG1288	antiporter activity
JUNP479_4067	COG0436	Aminotransferase
JUNP479_4069	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JUNP479_4070	COG0741	lytic transglycosylase activity
JUNP479_4070	COG0739	heme binding
JUNP479_4070	COG1196	nuclear chromosome segregation
JUNP479_4075	COG0788	formyltetrahydrofolate deformylase activity
JUNP479_4077	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JUNP479_4079	COG3118	belongs to the thioredoxin family
JUNP479_4081	COG0791	NLP P60 protein
JUNP479_4082	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
JUNP479_4084	COG0471	metal ion transport
JUNP479_4086	COG1388	LysM domain
JUNP479_4086	COG1376	ErfK ybiS ycfS ynhG family protein
JUNP479_4088	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JUNP479_4089	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_4090	COG0745	RESPONSE REGULATOR receiver
JUNP479_4091	COG5002	protein histidine kinase activity
JUNP479_4091	COG5000	phosphorelay sensor kinase activity
JUNP479_4097	COG0741	lytic transglycosylase activity
JUNP479_4097	COG1388	LysM domain
JUNP479_4098	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JUNP479_4099	COG2226	methyltransferase
JUNP479_4100	COG0328	RNA-DNA hybrid ribonuclease activity
JUNP479_4101	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JUNP479_4103	COG0784	Response regulator, receiver
JUNP479_4103	COG3437	response regulator, receiver
JUNP479_4104	COG2375	cellular response to nickel ion
JUNP479_4105	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JUNP479_4106	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JUNP479_4107	COG1120	ATPase activity
JUNP479_4108	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JUNP479_4110	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JUNP479_4111	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JUNP479_4115	COG1122	ATPase activity
JUNP479_4120	COG0708	Exodeoxyribonuclease III
JUNP479_4126	COG3132	Protein of unknown function, DUF480
JUNP479_4127	COG2841	Protein conserved in bacteria
JUNP479_4129	COG0534	Mate efflux family protein
JUNP479_4133	COG1454	alcohol dehydrogenase
JUNP479_4135	COG1309	transcriptional regulator
JUNP479_4142	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JUNP479_4143	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JUNP479_4144	COG1845	cytochrome c oxidase, subunit III
JUNP479_4145	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JUNP479_4146	COG0109	protoheme IX farnesyltransferase activity
JUNP479_4147	COG2814	Major facilitator Superfamily
JUNP479_4148	COG3152	Membrane
JUNP479_4151	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JUNP479_4154	COG0840	transmembrane signaling receptor activity
JUNP479_4156	COG1482	cell wall glycoprotein biosynthetic process
JUNP479_4157	COG2207	Transcriptional regulator
JUNP479_4158	COG0538	isocitrate dehydrogenase activity
JUNP479_4159	COG3048	D-serine ammonia-lyase activity
JUNP479_4160	COG0583	DNA-binding transcription factor activity
JUNP479_4161	COG0583	DNA-binding transcription factor activity
JUNP479_4163	COG0791	NLP P60 protein
JUNP479_4164	COG0583	DNA-binding transcription factor activity
JUNP479_4165	COG0450	alkyl hydroperoxide reductase
JUNP479_4169	COG0500	methyltransferase
JUNP479_4170	COG4106	trans-aconitate 2-methyltransferase activity
JUNP479_4171	COG1801	Protein of unknown function DUF72
JUNP479_4173	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JUNP479_4174	COG0217	transcriptional regulatory protein
JUNP479_4175	COG1012	belongs to the aldehyde dehydrogenase family
JUNP479_4175	COG1454	alcohol dehydrogenase
JUNP479_4176	COG2095	MarC family integral membrane protein
JUNP479_4178	COG0601	transmembrane transport
JUNP479_4179	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JUNP479_4182	COG0861	Integral membrane protein TerC family
JUNP479_4183	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JUNP479_4184	COG2020	methyltransferase activity
JUNP479_4188	COG4139	cobalamin transport
JUNP479_4190	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JUNP479_4191	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JUNP479_4192	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JUNP479_4193	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JUNP479_4194	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JUNP479_4196	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JUNP479_4197	COG0505	Belongs to the CarA family
JUNP479_4198	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JUNP479_4204	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
JUNP479_4207	COG0346	lactoylglutathione lyase activity
JUNP479_4208	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JUNP479_4209	COG4660	Part of a membrane complex involved in electron transport
JUNP479_4210	COG4659	FMN binding
JUNP479_4211	COG4658	electron transport chain
JUNP479_4213	COG2878	Part of a membrane complex involved in electron transport
JUNP479_4214	COG4657	Part of a membrane complex involved in electron transport
JUNP479_4219	COG0346	lactoylglutathione lyase activity
JUNP479_4220	COG1187	pseudouridine synthase activity
JUNP479_4222	COG2807	transmembrane transport
JUNP479_4224	COG0583	DNA-binding transcription factor activity
JUNP479_4227	COG2979	Protein of unknown function (DUF533)
JUNP479_4228	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JUNP479_4230	COG1294	oxidase, subunit
JUNP479_4233	COG3220	belongs to the UPF0276 family
JUNP479_4236	COG2249	NAD(P)H dehydrogenase (quinone) activity
JUNP479_4237	COG2814	Major facilitator Superfamily
JUNP479_4238	COG0656	L-ascorbic acid biosynthetic process
JUNP479_4242	COG0583	DNA-binding transcription factor activity
JUNP479_4244	COG0840	transmembrane signaling receptor activity
JUNP479_4245	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JUNP479_4246	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JUNP479_4247	COG2271	Major facilitator Superfamily
JUNP479_4248	COG1349	DNA-binding transcription factor activity
JUNP479_4251	COG0584	glycerophosphoryl diester phosphodiesterase
JUNP479_4252	COG4574	serine-type endopeptidase inhibitor activity
JUNP479_4253	COG3085	chromosome segregation
JUNP479_4254	COG0583	DNA-binding transcription factor activity
JUNP479_4256	COG1448	Aminotransferase
JUNP479_4259	COG2333	competence protein COMEC
JUNP479_4259	COG0658	competence protein
JUNP479_4261	COG1663	tetraacyldisaccharide 4'-kinase activity
JUNP479_4262	COG2835	tetraacyldisaccharide 4'-kinase activity
JUNP479_4263	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JUNP479_4264	COG2197	response regulator
JUNP479_4265	COG0322	excinuclease ABC activity
JUNP479_4285	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JUNP479_4301	COG1192	Involved in chromosome partitioning