locus-tag class description JJL53_00005 PF08299 Bacterial dnaA protein helix-turn-helix JJL53_00005 PF11638 DnaA N-terminal domain JJL53_00005 PF00308 Bacterial dnaA protein JJL53_00010 PF02767 DNA polymerase III beta subunit, central domain JJL53_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JJL53_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JJL53_00015 PF02463 RecF/RecN/SMC N terminal domain JJL53_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_00020 PF01751 Toprim domain JJL53_00020 PF00204 DNA gyrase B JJL53_00020 PF00986 DNA gyrase B subunit, carboxyl terminus JJL53_00020 PF18053 DNA gyrase B subunit insert domain JJL53_00030 PF13280 WYL domain JJL53_00030 PF08279 HTH domain JJL53_00035 PF01965 DJ-1/PfpI family JJL53_00035 PF12833 Helix-turn-helix domain JJL53_00040 PF12706 Beta-lactamase superfamily domain JJL53_00045 PF00011 Hsp20/alpha crystallin family JJL53_00050 PF00011 Hsp20/alpha crystallin family JJL53_00055 PF00155 Aminotransferase class I and II JJL53_00070 PF07690 Major Facilitator Superfamily JJL53_00075 PF00486 Transcriptional regulatory protein, C terminal JJL53_00075 PF00072 Response regulator receiver domain JJL53_00080 PF13492 GAF domain JJL53_00080 PF02702 Osmosensitive K+ channel His kinase sensor domain JJL53_00080 PF00512 His Kinase A (phospho-acceptor) domain JJL53_00080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_00080 PF13493 Domain of unknown function (DUF4118) JJL53_00085 PF02669 K+-transporting ATPase, c chain JJL53_00095 PF03814 Potassium-transporting ATPase A subunit JJL53_00100 PF01638 HxlR-like helix-turn-helix JJL53_00105 PF12146 Serine aminopeptidase, S33 JJL53_00115 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_00115 PF00107 Zinc-binding dehydrogenase JJL53_00125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_00125 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_00140 PF00873 AcrB/AcrD/AcrF family JJL53_00145 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_00150 PF00440 Bacterial regulatory proteins, tetR family JJL53_00185 PF12146 Serine aminopeptidase, S33 JJL53_00190 PF12105 SpoU, rRNA methylase, C-terminal JJL53_00190 PF00588 SpoU rRNA Methylase family JJL53_00195 PF02824 TGS domain JJL53_00195 PF04607 Region found in RelA / SpoT proteins JJL53_00195 PF13291 ACT domain JJL53_00200 PF01192 RNA polymerase Rpb6 JJL53_00205 PF00625 Guanylate kinase JJL53_00210 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJL53_00225 PF00892 EamA-like transporter family JJL53_00245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_00245 PF03466 LysR substrate binding domain JJL53_00250 PF00579 tRNA synthetases class I (W and Y) JJL53_00255 PF00582 Universal stress protein family JJL53_00260 PF12241 Trans-2-enoyl-CoA reductase catalytic region JJL53_00260 PF07055 Enoyl reductase FAD binding domain JJL53_00260 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JJL53_00265 PF05230 MASE2 domain JJL53_00265 PF00990 Diguanylate cyclase, GGDEF domain JJL53_00270 PF00210 Ferritin-like domain JJL53_00280 PF07690 Major Facilitator Superfamily JJL53_00285 PF01810 LysE type translocator JJL53_00290 PF07694 5TMR of 5TMR-LYT JJL53_00290 PF06580 Histidine kinase JJL53_00290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_00295 PF00072 Response regulator receiver domain JJL53_00295 PF04397 LytTr DNA-binding domain JJL53_00300 PF07690 Major Facilitator Superfamily JJL53_00305 PF02222 ATP-grasp domain JJL53_00305 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JJL53_00310 PF00731 AIR carboxylase JJL53_00315 PF00593 TonB dependent receptor JJL53_00315 PF07715 TonB-dependent Receptor Plug Domain JJL53_00320 PF01177 Asp/Glu/Hydantoin racemase JJL53_00350 PF13380 CoA binding domain JJL53_00350 PF00583 Acetyltransferase (GNAT) family JJL53_00350 PF13607 Succinyl-CoA ligase like flavodoxin domain JJL53_00360 PF03466 LysR substrate binding domain JJL53_00360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_00365 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JJL53_00365 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JJL53_00370 PF00342 Phosphoglucose isomerase JJL53_00380 PF00924 Mechanosensitive ion channel JJL53_00380 PF05552 Conserved TM helix JJL53_00385 PF00440 Bacterial regulatory proteins, tetR family JJL53_00390 PF00692 dUTPase JJL53_00395 PF04127 DNA / pantothenate metabolism flavoprotein JJL53_00395 PF02441 Flavoprotein JJL53_00400 PF04002 RadC-like JAB domain JJL53_00405 PF00830 Ribosomal L28 family JJL53_00410 PF00471 Ribosomal protein L33 JJL53_00420 PF06827 Zinc finger found in FPG and IleRS JJL53_00420 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JJL53_00420 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JJL53_00425 PF04393 Protein of unknown function (DUF535) JJL53_00430 PF01467 Cytidylyltransferase-like JJL53_00435 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJL53_00440 PF00535 Glycosyl transferase family 2 JJL53_00445 PF01075 Glycosyltransferase family 9 (heptosyltransferase) JJL53_00450 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) JJL53_00460 PF03755 YicC-like family, N-terminal region JJL53_00460 PF08340 Domain of unknown function (DUF1732) JJL53_00465 PF03725 3' exoribonuclease family, domain 2 JJL53_00465 PF01138 3' exoribonuclease family, domain 1 JJL53_00470 PF00156 Phosphoribosyl transferase domain JJL53_00475 PF00403 Heavy-metal-associated domain JJL53_00480 PF00376 MerR family regulatory protein JJL53_00480 PF09278 MerR, DNA binding JJL53_00485 PF00563 EAL domain JJL53_00485 PF01590 GAF domain JJL53_00485 PF00990 Diguanylate cyclase, GGDEF domain JJL53_00485 PF00360 Phytochrome region JJL53_00490 PF06288 Protein of unknown function (DUF1040) JJL53_00495 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase JJL53_00495 PF12801 4Fe-4S binding domain JJL53_00495 PF13746 4Fe-4S dicluster domain JJL53_00500 PF01636 Phosphotransferase enzyme family JJL53_00505 PF01323 DSBA-like thioredoxin domain JJL53_00510 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_00515 PF00005 ABC transporter JJL53_00525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JJL53_00525 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JJL53_00530 PF00857 Isochorismatase family JJL53_00540 PF04463 Protein of unknown function (DUF523) JJL53_00545 PF01553 Acyltransferase JJL53_00550 PF01553 Acyltransferase JJL53_00555 PF01078 Magnesium chelatase, subunit ChlI JJL53_00555 PF13335 Magnesium chelatase, subunit ChlI C-terminal JJL53_00560 PF00205 Thiamine pyrophosphate enzyme, central domain JJL53_00560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJL53_00560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJL53_00570 PF01063 Amino-transferase class IV JJL53_00575 PF00920 Dehydratase family JJL53_00580 PF00585 C-terminal regulatory domain of Threonine dehydratase JJL53_00580 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_00585 PF01609 Transposase DDE domain JJL53_00585 PF13808 DDE_Tnp_1-associated JJL53_00590 PF05598 Transposase domain (DUF772) JJL53_00590 PF01609 Transposase DDE domain JJL53_00595 PF00691 OmpA family JJL53_00595 PF01389 OmpA-like transmembrane domain JJL53_00600 PF00271 Helicase conserved C-terminal domain JJL53_00600 PF18074 Primosomal protein N C-terminal domain JJL53_00600 PF00270 DEAD/DEAH box helicase JJL53_00600 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JJL53_00600 PF17764 3′ DNA-binding domain (3′BD) JJL53_00605 PF01197 Ribosomal protein L31 JJL53_00610 PF11066 Protein of unknown function (DUF2867) JJL53_00610 PF13460 NAD(P)H-binding JJL53_00615 PF03949 Malic enzyme, NAD binding domain JJL53_00615 PF00390 Malic enzyme, N-terminal domain JJL53_00625 PF00512 His Kinase A (phospho-acceptor) domain JJL53_00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_00625 PF00672 HAMP domain JJL53_00630 PF00072 Response regulator receiver domain JJL53_00630 PF00486 Transcriptional regulatory protein, C terminal JJL53_00635 PF05958 tRNA (Uracil-5-)-methyltransferase JJL53_00650 PF02903 Alpha amylase, N-terminal ig-like domain JJL53_00650 PF00128 Alpha amylase, catalytic domain JJL53_00665 PF00012 Hsp70 protein JJL53_00670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJL53_00670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJL53_00675 PF05981 CreA protein JJL53_00695 PF01258 Prokaryotic dksA/traR C4-type zinc finger JJL53_00700 PF00120 Glutamine synthetase, catalytic domain JJL53_00705 PF00202 Aminotransferase class-III JJL53_00710 PF13416 Bacterial extracellular solute-binding protein JJL53_00715 PF13416 Bacterial extracellular solute-binding protein JJL53_00720 PF00005 ABC transporter JJL53_00720 PF08402 TOBE domain JJL53_00725 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_00730 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_00735 PF03473 MOSC domain JJL53_00735 PF03475 3-alpha domain JJL53_00760 PF03061 Thioesterase superfamily JJL53_00765 PF00570 HRDC domain JJL53_00765 PF00270 DEAD/DEAH box helicase JJL53_00765 PF00271 Helicase conserved C-terminal domain JJL53_00765 PF16124 RecQ zinc-binding JJL53_00765 PF09382 RQC domain JJL53_00775 PF00034 Cytochrome c JJL53_00780 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JJL53_00790 PF02592 Putative vitamin uptake transporter JJL53_00795 PF03737 Aldolase/RraA JJL53_00800 PF00571 CBS domain JJL53_00800 PF01769 Divalent cation transporter JJL53_00800 PF03448 MgtE intracellular N domain JJL53_00805 PF14824 Sirohaem biosynthesis protein central JJL53_00805 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJL53_00805 PF10414 Sirohaem synthase dimerisation region JJL53_00810 PF01226 Formate/nitrite transporter JJL53_00815 PF13806 Rieske-like [2Fe-2S] domain JJL53_00820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJL53_00820 PF04324 BFD-like [2Fe-2S] binding domain JJL53_00820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJL53_00820 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_00820 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJL53_00835 PF00005 ABC transporter JJL53_00840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_00850 PF03466 LysR substrate binding domain JJL53_00850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_00855 PF07690 Major Facilitator Superfamily JJL53_00860 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_00860 PF10431 C-terminal, D2-small domain, of ClpB protein JJL53_00860 PF07724 AAA domain (Cdc48 subfamily) JJL53_00865 PF00227 Proteasome subunit JJL53_00875 PF00750 tRNA synthetases class I (R) JJL53_00875 PF05746 DALR anticodon binding domain JJL53_00875 PF03485 Arginyl tRNA synthetase N terminal domain JJL53_00885 PF04545 Sigma-70, region 4 JJL53_00885 PF04542 Sigma-70 region 2 JJL53_00890 PF12973 ChrR Cupin-like domain JJL53_00895 PF02673 Bacitracin resistance protein BacA JJL53_00900 PF00248 Aldo/keto reductase family JJL53_00905 PF01263 Aldose 1-epimerase JJL53_00910 PF00288 GHMP kinases N terminal domain JJL53_00910 PF08544 GHMP kinases C terminal JJL53_00910 PF10509 Galactokinase galactose-binding signature JJL53_00915 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JJL53_00915 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JJL53_00920 PF16363 GDP-mannose 4,6 dehydratase JJL53_00925 PF00356 Bacterial regulatory proteins, lacI family JJL53_00930 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JJL53_00930 PF00703 Glycosyl hydrolases family 2 JJL53_00930 PF16353 Domain of unknown function(DUF4981) JJL53_00930 PF02929 Beta galactosidase small chain JJL53_00930 PF02837 Glycosyl hydrolases family 2, sugar binding domain JJL53_00935 PF13407 Periplasmic binding protein domain JJL53_00940 PF00005 ABC transporter JJL53_00945 PF02653 Branched-chain amino acid transport system / permease component JJL53_00950 PF01609 Transposase DDE domain JJL53_00950 PF13006 Insertion element 4 transposase N-terminal JJL53_00955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_00955 PF00672 HAMP domain JJL53_00955 PF02743 Cache domain JJL53_00975 PF00696 Amino acid kinase family JJL53_00980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJL53_00980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJL53_00985 PF03606 C4-dicarboxylate anaerobic carrier JJL53_00990 PF02863 Arginine repressor, C-terminal domain JJL53_00990 PF01316 Arginine repressor, DNA binding domain JJL53_00995 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain JJL53_00995 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain JJL53_01000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJL53_01000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJL53_01015 PF02666 Phosphatidylserine decarboxylase JJL53_01025 PF02743 Cache domain JJL53_01025 PF00672 HAMP domain JJL53_01025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_01030 PF08212 Lipocalin-like domain JJL53_01035 PF06719 AraC-type transcriptional regulator N-terminus JJL53_01035 PF12833 Helix-turn-helix domain JJL53_01040 PF00465 Iron-containing alcohol dehydrogenase JJL53_01045 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJL53_01045 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJL53_01045 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch JJL53_01050 PF02233 NAD(P) transhydrogenase beta subunit JJL53_01055 PF03313 Serine dehydratase alpha chain JJL53_01060 PF00375 Sodium:dicarboxylate symporter family JJL53_01065 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_01065 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_01070 PF13525 Outer membrane lipoprotein JJL53_01075 PF00849 RNA pseudouridylate synthase JJL53_01075 PF01479 S4 domain JJL53_01080 PF02578 Multi-copper polyphenol oxidoreductase laccase JJL53_01085 PF17871 AAA lid domain JJL53_01085 PF07724 AAA domain (Cdc48 subfamily) JJL53_01085 PF10431 C-terminal, D2-small domain, of ClpB protein JJL53_01085 PF02861 Clp amino terminal domain, pathogenicity island component JJL53_01085 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_01090 PF03590 Aspartate-ammonia ligase JJL53_01095 PF01037 Lrp/AsnC ligand binding domain JJL53_01115 PF10063 Uncharacterized integral membrane protein (DUF2301) JJL53_01120 PF00571 CBS domain JJL53_01120 PF00478 IMP dehydrogenase / GMP reductase domain JJL53_01140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_01140 PF00512 His Kinase A (phospho-acceptor) domain JJL53_01150 PF00072 Response regulator receiver domain JJL53_01150 PF00158 Sigma-54 interaction domain JJL53_01155 PF06496 Protein of unknown function (DUF1097) JJL53_01160 PF00174 Oxidoreductase molybdopterin binding domain JJL53_01165 PF01794 Ferric reductase like transmembrane component JJL53_01180 PF00486 Transcriptional regulatory protein, C terminal JJL53_01180 PF00072 Response regulator receiver domain JJL53_01185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_01195 PF01568 Molydopterin dinucleotide binding domain JJL53_01195 PF18364 Molybdopterin oxidoreductase N-terminal domain JJL53_01195 PF00384 Molybdopterin oxidoreductase JJL53_01200 PF03264 NapC/NirT cytochrome c family, N-terminal region JJL53_01205 PF01131 DNA topoisomerase JJL53_01205 PF01751 Toprim domain JJL53_01210 PF02386 Cation transport protein JJL53_01215 PF02080 TrkA-C domain JJL53_01215 PF02254 TrkA-N domain JJL53_01220 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JJL53_01220 PF01565 FAD binding domain JJL53_01225 PF03099 Biotin/lipoate A/B protein ligase family JJL53_01225 PF02237 Biotin protein ligase C terminal domain JJL53_01225 PF08279 HTH domain JJL53_01230 PF00485 Phosphoribulokinase / Uridine kinase family JJL53_01245 PF03144 Elongation factor Tu domain 2 JJL53_01245 PF00009 Elongation factor Tu GTP binding domain JJL53_01245 PF03143 Elongation factor Tu C-terminal domain JJL53_01255 PF00584 SecE/Sec61-gamma subunits of protein translocation complex JJL53_01260 PF00467 KOW motif JJL53_01260 PF02357 Transcription termination factor nusG JJL53_01265 PF03946 Ribosomal protein L11, N-terminal domain JJL53_01265 PF00298 Ribosomal protein L11, RNA binding domain JJL53_01270 PF00687 Ribosomal protein L1p/L10e family JJL53_01275 PF00466 Ribosomal protein L10 JJL53_01280 PF00542 Ribosomal protein L7/L12 C-terminal domain JJL53_01280 PF16320 Ribosomal protein L7/L12 dimerisation domain JJL53_01285 PF04565 RNA polymerase Rpb2, domain 3 JJL53_01285 PF04561 RNA polymerase Rpb2, domain 2 JJL53_01285 PF00562 RNA polymerase Rpb2, domain 6 JJL53_01285 PF10385 RNA polymerase beta subunit external 1 domain JJL53_01285 PF04560 RNA polymerase Rpb2, domain 7 JJL53_01285 PF04563 RNA polymerase beta subunit JJL53_01290 PF04997 RNA polymerase Rpb1, domain 1 JJL53_01290 PF04998 RNA polymerase Rpb1, domain 5 JJL53_01290 PF05000 RNA polymerase Rpb1, domain 4 JJL53_01290 PF00623 RNA polymerase Rpb1, domain 2 JJL53_01290 PF04983 RNA polymerase Rpb1, domain 3 JJL53_01295 PF08348 YheO-like PAS domain JJL53_01295 PF13309 HTH domain JJL53_01300 PF01042 Endoribonuclease L-PSP JJL53_01305 PF02635 DsrE/DsrF-like family JJL53_01310 PF02635 DsrE/DsrF-like family JJL53_01315 PF04077 DsrH like protein JJL53_01320 PF00164 Ribosomal protein S12/S23 JJL53_01325 PF00177 Ribosomal protein S7p/S5e JJL53_01330 PF00679 Elongation factor G C-terminus JJL53_01330 PF03764 Elongation factor G, domain IV JJL53_01330 PF14492 Elongation Factor G, domain II JJL53_01330 PF00009 Elongation factor Tu GTP binding domain JJL53_01330 PF03144 Elongation factor Tu domain 2 JJL53_01335 PF00009 Elongation factor Tu GTP binding domain JJL53_01335 PF03143 Elongation factor Tu C-terminal domain JJL53_01335 PF03144 Elongation factor Tu domain 2 JJL53_01380 PF01695 IstB-like ATP binding protein JJL53_01390 PF01609 Transposase DDE domain JJL53_01390 PF13808 DDE_Tnp_1-associated JJL53_01405 PF00860 Permease family JJL53_01410 PF02733 Dak1 domain JJL53_01415 PF02734 DAK2 domain JJL53_01420 PF00381 PTS HPr component phosphorylation site JJL53_01420 PF03610 PTS system fructose IIA component JJL53_01420 PF00391 PEP-utilising enzyme, mobile domain JJL53_01420 PF05524 PEP-utilising enzyme, N-terminal JJL53_01425 PF00465 Iron-containing alcohol dehydrogenase JJL53_01430 PF00989 PAS fold JJL53_01430 PF02954 Bacterial regulatory protein, Fis family JJL53_01430 PF00158 Sigma-54 interaction domain JJL53_01435 PF00106 short chain dehydrogenase JJL53_01440 PF01594 AI-2E family transporter JJL53_01445 PF01569 PAP2 superfamily JJL53_01465 PF06628 Catalase-related immune-responsive JJL53_01465 PF00199 Catalase JJL53_01470 PF00583 Acetyltransferase (GNAT) family JJL53_01475 PF12833 Helix-turn-helix domain JJL53_01475 PF06719 AraC-type transcriptional regulator N-terminus JJL53_01490 PF00990 Diguanylate cyclase, GGDEF domain JJL53_01500 PF08402 TOBE domain JJL53_01500 PF00005 ABC transporter JJL53_01510 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_01525 PF00392 Bacterial regulatory proteins, gntR family JJL53_01525 PF07702 UTRA domain JJL53_01535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_01535 PF03466 LysR substrate binding domain JJL53_01545 PF17954 Quercetinase C-terminal cupin domain JJL53_01545 PF02678 Pirin JJL53_01550 PF07681 DoxX JJL53_01555 PF17946 RecC C-terminal domain JJL53_01560 PF13361 UvrD-like helicase C-terminal domain JJL53_01560 PF12705 PD-(D/E)XK nuclease superfamily JJL53_01560 PF00580 UvrD/REP helicase N-terminal domain JJL53_01565 PF13538 UvrD-like helicase C-terminal domain JJL53_01570 PF01609 Transposase DDE domain JJL53_01570 PF05598 Transposase domain (DUF772) JJL53_01580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_01590 PF00909 Ammonium Transporter Family JJL53_01595 PF00543 Nitrogen regulatory protein P-II JJL53_01600 PF00990 Diguanylate cyclase, GGDEF domain JJL53_01600 PF08448 PAS fold JJL53_01620 PF00486 Transcriptional regulatory protein, C terminal JJL53_01620 PF00072 Response regulator receiver domain JJL53_01625 PF00672 HAMP domain JJL53_01625 PF00512 His Kinase A (phospho-acceptor) domain JJL53_01625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_01630 PF00313 'Cold-shock' DNA-binding domain JJL53_01645 PF00436 Single-strand binding protein family JJL53_01650 PF00196 Bacterial regulatory proteins, luxR family JJL53_01655 PF00005 ABC transporter JJL53_01655 PF17760 UvrA interaction domain JJL53_01655 PF17755 UvrA DNA-binding domain JJL53_01660 PF13737 Transposase DDE domain JJL53_01665 PF03922 OmpW family JJL53_01670 PF12729 Four helix bundle sensory module for signal transduction JJL53_01670 PF00672 HAMP domain JJL53_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_01685 PF02219 Methylenetetrahydrofolate reductase JJL53_01690 PF00884 Sulfatase JJL53_01700 PF16657 Maltogenic Amylase, C-terminal domain JJL53_01700 PF02903 Alpha amylase, N-terminal ig-like domain JJL53_01700 PF00128 Alpha amylase, catalytic domain JJL53_01720 PF00106 short chain dehydrogenase JJL53_01735 PF00465 Iron-containing alcohol dehydrogenase JJL53_01740 PF01609 Transposase DDE domain JJL53_01740 PF13006 Insertion element 4 transposase N-terminal JJL53_01750 PF01053 Cys/Met metabolism PLP-dependent enzyme JJL53_01760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_01760 PF12793 Sugar transport-related sRNA regulator N-term JJL53_01780 PF00561 alpha/beta hydrolase fold JJL53_01790 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JJL53_01790 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JJL53_01795 PF02698 DUF218 domain JJL53_01800 PF08453 Peptidase family M9 N-terminal JJL53_01800 PF01752 Collagenase JJL53_01805 PF00501 AMP-binding enzyme JJL53_01810 PF13378 Enolase C-terminal domain-like JJL53_01815 PF00378 Enoyl-CoA hydratase/isomerase JJL53_01820 PF12697 Alpha/beta hydrolase family JJL53_01825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJL53_01825 PF16582 Middle domain of thiamine pyrophosphate JJL53_01825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJL53_01830 PF00425 chorismate binding enzyme JJL53_01835 PF01040 UbiA prenyltransferase family JJL53_01840 PF13006 Insertion element 4 transposase N-terminal JJL53_01840 PF01609 Transposase DDE domain JJL53_01865 PF03880 DbpA RNA binding domain JJL53_01865 PF00270 DEAD/DEAH box helicase JJL53_01865 PF00271 Helicase conserved C-terminal domain JJL53_01870 PF01609 Transposase DDE domain JJL53_01870 PF13808 DDE_Tnp_1-associated JJL53_01875 PF01773 Na+ dependent nucleoside transporter N-terminus JJL53_01875 PF07670 Nucleoside recognition JJL53_01875 PF07662 Na+ dependent nucleoside transporter C-terminus JJL53_01890 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JJL53_01895 PF01544 CorA-like Mg2+ transporter protein JJL53_01915 PF05068 Mannitol repressor JJL53_01920 PF08125 Mannitol dehydrogenase C-terminal domain JJL53_01920 PF01232 Mannitol dehydrogenase Rossmann domain JJL53_01925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJL53_01925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_01925 PF02378 Phosphotransferase system, EIIC JJL53_01930 PF01695 IstB-like ATP binding protein JJL53_01935 PF00665 Integrase core domain JJL53_01940 PF01609 Transposase DDE domain JJL53_01940 PF13006 Insertion element 4 transposase N-terminal JJL53_01945 PF17876 Cold shock domain JJL53_01945 PF08206 Ribonuclease B OB domain JJL53_01945 PF00773 RNB domain JJL53_01950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_01950 PF03466 LysR substrate binding domain JJL53_01955 PF00765 Autoinducer synthase JJL53_01960 PF03472 Autoinducer binding domain JJL53_01960 PF00196 Bacterial regulatory proteins, luxR family JJL53_01965 PF01810 LysE type translocator JJL53_02000 PF03279 Bacterial lipid A biosynthesis acyltransferase JJL53_02005 PF01467 Cytidylyltransferase-like JJL53_02005 PF00294 pfkB family carbohydrate kinase JJL53_02010 PF02321 Outer membrane efflux protein JJL53_02015 PF00293 NUDIX domain JJL53_02020 PF06853 Protein of unknown function (DUF1249) JJL53_02025 PF00149 Calcineurin-like phosphoesterase JJL53_02030 PF05728 Uncharacterised protein family (UPF0227) JJL53_02035 PF00293 NUDIX domain JJL53_02045 PF01751 Toprim domain JJL53_02045 PF00986 DNA gyrase B subunit, carboxyl terminus JJL53_02045 PF00204 DNA gyrase B JJL53_02045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_02050 PF00521 DNA gyrase/topoisomerase IV, subunit A JJL53_02050 PF03989 DNA gyrase C-terminal domain, beta-propeller JJL53_02055 PF01609 Transposase DDE domain JJL53_02055 PF05598 Transposase domain (DUF772) JJL53_02090 PF13006 Insertion element 4 transposase N-terminal JJL53_02090 PF01609 Transposase DDE domain JJL53_02100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_02100 PF03466 LysR substrate binding domain JJL53_02110 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family JJL53_02135 PF00684 DnaJ central domain JJL53_02135 PF00226 DnaJ domain JJL53_02135 PF01556 DnaJ C terminal domain JJL53_02145 PF00578 AhpC/TSA family JJL53_02165 PF01553 Acyltransferase JJL53_02170 PF04012 PspA/IM30 family JJL53_02185 PF01541 GIY-YIG catalytic domain JJL53_02190 PF00892 EamA-like transporter family JJL53_02195 PF03167 Uracil DNA glycosylase superfamily JJL53_02205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_02205 PF03466 LysR substrate binding domain JJL53_02210 PF00950 ABC 3 transport family JJL53_02215 PF00005 ABC transporter JJL53_02220 PF01297 Zinc-uptake complex component A periplasmic JJL53_02250 PF01476 LysM domain JJL53_02250 PF08525 Opacity-associated protein A N-terminal motif JJL53_02250 PF01551 Peptidase family M23 JJL53_02255 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJL53_02260 PF04222 Protein of unknown function (DUF416) JJL53_02275 PF02028 BCCT, betaine/carnitine/choline family transporter JJL53_02280 PF05190 MutS family domain IV JJL53_02280 PF05192 MutS domain III JJL53_02280 PF00488 MutS domain V JJL53_02280 PF01624 MutS domain I JJL53_02280 PF05188 MutS domain II JJL53_02290 PF02464 Competence-damaged protein JJL53_02295 PF00154 recA bacterial DNA recombination protein JJL53_02300 PF02631 RecX family JJL53_02305 PF13006 Insertion element 4 transposase N-terminal JJL53_02305 PF01609 Transposase DDE domain JJL53_02310 PF01411 tRNA synthetases class II (A) JJL53_02310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJL53_02310 PF02272 DHHA1 domain JJL53_02315 PF13840 ACT domain JJL53_02315 PF00696 Amino acid kinase family JJL53_02315 PF01842 ACT domain JJL53_02320 PF02599 Global regulator protein family JJL53_02355 PF00768 D-alanyl-D-alanine carboxypeptidase JJL53_02360 PF09335 SNARE associated Golgi protein JJL53_02365 PF00571 CBS domain JJL53_02365 PF03471 Transporter associated domain JJL53_02365 PF01595 Cyclin M transmembrane N-terminal domain JJL53_02370 PF00133 tRNA synthetases class I (I, L, M and V) JJL53_02370 PF08264 Anticodon-binding domain of tRNA JJL53_02370 PF10458 Valyl tRNA synthetase tRNA binding arm JJL53_02375 PF04364 DNA polymerase III chi subunit, HolC JJL53_02380 PF02789 Cytosol aminopeptidase family, N-terminal domain JJL53_02380 PF00883 Cytosol aminopeptidase family, catalytic domain JJL53_02385 PF03739 Lipopolysaccharide export system permease LptF/LptG JJL53_02390 PF03739 Lipopolysaccharide export system permease LptF/LptG JJL53_02425 PF05958 tRNA (Uracil-5-)-methyltransferase JJL53_02425 PF01938 TRAM domain JJL53_02445 PF01026 TatD related DNase JJL53_02450 PF07670 Nucleoside recognition JJL53_02450 PF01773 Na+ dependent nucleoside transporter N-terminus JJL53_02450 PF07662 Na+ dependent nucleoside transporter C-terminus JJL53_02460 PF01791 DeoC/LacD family aldolase JJL53_02465 PF02885 Glycosyl transferase family, helical bundle domain JJL53_02465 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JJL53_02465 PF00591 Glycosyl transferase family, a/b domain JJL53_02470 PF01676 Metalloenzyme superfamily JJL53_02475 PF01048 Phosphorylase superfamily JJL53_02485 PF11737 Protein of unknown function (DUF3300) JJL53_02495 PF18429 Domain of unknown function (DUF5609) JJL53_02510 PF18073 Rubredoxin metal binding domain JJL53_02515 PF07238 PilZ domain JJL53_02520 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ JJL53_02525 PF00216 Bacterial DNA-binding protein JJL53_02540 PF01207 Dihydrouridine synthase (Dus) JJL53_02545 PF01475 Ferric uptake regulator family JJL53_02560 PF05525 Branched-chain amino acid transport protein JJL53_02565 PF05175 Methyltransferase small domain JJL53_02570 PF00270 DEAD/DEAH box helicase JJL53_02570 PF00271 Helicase conserved C-terminal domain JJL53_02575 PF03883 Peroxide stress protein YaaA JJL53_02585 PF00437 Type II/IV secretion system protein JJL53_02590 PF01168 Alanine racemase, N-terminal domain JJL53_02595 PF03807 NADP oxidoreductase coenzyme F420-dependent JJL53_02595 PF14748 Pyrroline-5-carboxylate reductase dimerisation JJL53_02600 PF02325 YGGT family JJL53_02605 PF02594 Uncharacterised ACR, YggU family COG1872 JJL53_02625 PF06062 Uncharacterised protein family (UPF0231) JJL53_02630 PF13556 PucR C-terminal helix-turn-helix domain JJL53_02630 PF17853 GGDEF-like domain JJL53_02630 PF05651 Putative sugar diacid recognition JJL53_02635 PF02447 GntP family permease JJL53_02640 PF02595 Glycerate kinase family JJL53_02650 PF00255 Glutathione peroxidase JJL53_02655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_02655 PF03466 LysR substrate binding domain JJL53_02660 PF07662 Na+ dependent nucleoside transporter C-terminus JJL53_02660 PF01773 Na+ dependent nucleoside transporter N-terminus JJL53_02660 PF07670 Nucleoside recognition JJL53_02665 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJL53_02665 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJL53_02670 PF00472 RF-1 domain JJL53_02675 PF00543 Nitrogen regulatory protein P-II JJL53_02690 PF00005 ABC transporter JJL53_02690 PF08402 TOBE domain JJL53_02695 PF04261 Dyp-type peroxidase family JJL53_02700 PF01316 Arginine repressor, DNA binding domain JJL53_02700 PF02863 Arginine repressor, C-terminal domain JJL53_02705 PF00005 ABC transporter JJL53_02710 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_02715 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_02720 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_02725 PF00056 lactate/malate dehydrogenase, NAD binding domain JJL53_02725 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JJL53_02730 PF08238 Sel1 repeat JJL53_02735 PF00970 Oxidoreductase FAD-binding domain JJL53_02735 PF00175 Oxidoreductase NAD-binding domain JJL53_02735 PF00042 Globin JJL53_02740 PF01609 Transposase DDE domain JJL53_02745 PF02082 Transcriptional regulator JJL53_02750 PF01595 Cyclin M transmembrane N-terminal domain JJL53_02750 PF03471 Transporter associated domain JJL53_02750 PF00571 CBS domain JJL53_02755 PF01578 Cytochrome C assembly protein JJL53_02760 PF02978 Signal peptide binding domain JJL53_02760 PF02881 SRP54-type protein, helical bundle domain JJL53_02760 PF00448 SRP54-type protein, GTPase domain JJL53_02765 PF00886 Ribosomal protein S16 JJL53_02770 PF05239 PRC-barrel domain JJL53_02770 PF01782 RimM N-terminal domain JJL53_02775 PF01746 tRNA (Guanine-1)-methyltransferase JJL53_02780 PF01245 Ribosomal protein L19 JJL53_02790 PF02976 DNA mismatch repair enzyme MutH JJL53_02795 PF00293 NUDIX domain JJL53_02800 PF00391 PEP-utilising enzyme, mobile domain JJL53_02800 PF02896 PEP-utilising enzyme, TIM barrel domain JJL53_02800 PF01590 GAF domain JJL53_02800 PF05524 PEP-utilising enzyme, N-terminal JJL53_02805 PF01790 Prolipoprotein diacylglyceryl transferase JJL53_02810 PF00303 Thymidylate synthase JJL53_02815 PF06965 Na+/H+ antiporter 1 JJL53_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_02825 PF03466 LysR substrate binding domain JJL53_02830 PF01022 Bacterial regulatory protein, arsR family JJL53_02835 PF01649 Ribosomal protein S20 JJL53_02840 PF03023 Lipid II flippase MurJ JJL53_02845 PF01687 Riboflavin kinase JJL53_02845 PF06574 FAD synthetase JJL53_02850 PF06827 Zinc finger found in FPG and IleRS JJL53_02850 PF08264 Anticodon-binding domain of tRNA JJL53_02850 PF00133 tRNA synthetases class I (I, L, M and V) JJL53_02855 PF01252 Signal peptidase (SPase) II JJL53_02860 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_02865 PF02401 LytB protein JJL53_02885 PF13808 DDE_Tnp_1-associated JJL53_02885 PF01609 Transposase DDE domain JJL53_02910 PF01609 Transposase DDE domain JJL53_02910 PF13808 DDE_Tnp_1-associated JJL53_02925 PF01609 Transposase DDE domain JJL53_02935 PF00665 Integrase core domain JJL53_02940 PF01695 IstB-like ATP binding protein JJL53_02950 PF13808 DDE_Tnp_1-associated JJL53_02950 PF01609 Transposase DDE domain JJL53_02955 PF00795 Carbon-nitrogen hydrolase JJL53_02955 PF02540 NAD synthase JJL53_02960 PF00543 Nitrogen regulatory protein P-II JJL53_02970 PF02664 S-Ribosylhomocysteinase (LuxS) JJL53_02975 PF00990 Diguanylate cyclase, GGDEF domain JJL53_02980 PF08461 Ribonuclease R winged-helix domain JJL53_02980 PF17876 Cold shock domain JJL53_02980 PF00773 RNB domain JJL53_02980 PF00575 S1 RNA binding domain JJL53_02980 PF08206 Ribonuclease B OB domain JJL53_02985 PF00588 SpoU rRNA Methylase family JJL53_02985 PF08032 RNA 2'-O ribose methyltransferase substrate binding JJL53_02995 PF13673 Acetyltransferase (GNAT) domain JJL53_03010 PF01566 Natural resistance-associated macrophage protein JJL53_03015 PF01250 Ribosomal protein S6 JJL53_03020 PF01084 Ribosomal protein S18 JJL53_03025 PF01281 Ribosomal protein L9, N-terminal domain JJL53_03025 PF03948 Ribosomal protein L9, C-terminal domain JJL53_03030 PF00970 Oxidoreductase FAD-binding domain JJL53_03030 PF00175 Oxidoreductase NAD-binding domain JJL53_03050 PF00107 Zinc-binding dehydrogenase JJL53_03050 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_03055 PF09335 SNARE associated Golgi protein JJL53_03060 PF00675 Insulinase (Peptidase family M16) JJL53_03060 PF05193 Peptidase M16 inactive domain JJL53_03065 PF04262 Glutamate-cysteine ligase JJL53_03070 PF03605 Anaerobic c4-dicarboxylate membrane transporter JJL53_03075 PF00206 Lyase JJL53_03075 PF10415 Fumarase C C-terminus JJL53_03080 PF04186 FxsA cytoplasmic membrane protein JJL53_03085 PF01554 MatE JJL53_03090 PF00166 Chaperonin 10 Kd subunit JJL53_03095 PF00118 TCP-1/cpn60 chaperonin family JJL53_03115 PF00849 RNA pseudouridylate synthase JJL53_03120 PF12137 RNA polymerase recycling family C-terminal JJL53_03120 PF00176 SNF2 family N-terminal domain JJL53_03120 PF18339 RapA N-terminal Tudor like domain 1 JJL53_03120 PF18337 RapA N-terminal Tudor like domain JJL53_03120 PF00271 Helicase conserved C-terminal domain JJL53_03165 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_03170 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_03175 PF12857 TOBE-like domain JJL53_03175 PF00005 ABC transporter JJL53_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_03180 PF03466 LysR substrate binding domain JJL53_03190 PF18416 N-acetylglucosamine binding protein domain 2 JJL53_03190 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JJL53_03195 PF17200 Single Cache domain 2 JJL53_03195 PF00672 HAMP domain JJL53_03195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_03220 PF11230 Protein of unknown function (DUF3029) JJL53_03225 PF04055 Radical SAM superfamily JJL53_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_03235 PF03466 LysR substrate binding domain JJL53_03240 PF00155 Aminotransferase class I and II JJL53_03250 PF11658 Cellulose biosynthesis protein BcsG JJL53_03260 PF06564 Cellulose biosynthesis protein BcsQ JJL53_03265 PF07238 PilZ domain JJL53_03265 PF00535 Glycosyl transferase family 2 JJL53_03270 PF03170 Bacterial cellulose synthase subunit JJL53_03275 PF01270 Glycosyl hydrolases family 8 JJL53_03280 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) JJL53_03285 PF02583 Metal-sensitive transcriptional repressor JJL53_03300 PF01609 Transposase DDE domain JJL53_03305 PF11852 Domain of unknown function (DUF3372) JJL53_03305 PF17967 Pullulanase N2 domain JJL53_03305 PF18494 Pullulanase Ins domain JJL53_03305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJL53_03305 PF03714 Bacterial pullanase-associated domain JJL53_03310 PF00403 Heavy-metal-associated domain JJL53_03315 PF08534 Redoxin JJL53_03320 PF00271 Helicase conserved C-terminal domain JJL53_03320 PF00270 DEAD/DEAH box helicase JJL53_03335 PF03372 Endonuclease/Exonuclease/phosphatase family JJL53_03345 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_03345 PF01610 Transposase JJL53_03345 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_03360 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_03370 PF10952 Protein of unknown function (DUF2753) JJL53_03375 PF00378 Enoyl-CoA hydratase/isomerase JJL53_03390 PF00106 short chain dehydrogenase JJL53_03395 PF03129 Anticodon binding domain JJL53_03395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJL53_03395 PF04073 Aminoacyl-tRNA editing domain JJL53_03400 PF07499 RuvA, C-terminal domain JJL53_03400 PF01330 RuvA N terminal domain JJL53_03405 PF05491 RuvB C-terminal winged helix domain JJL53_03405 PF17864 RuvB AAA lid domain JJL53_03405 PF05496 Holliday junction DNA helicase RuvB P-loop domain JJL53_03410 PF01654 Cytochrome bd terminal oxidase subunit I JJL53_03415 PF02322 Cytochrome bd terminal oxidase subunit II JJL53_03420 PF08173 Membrane bound YbgT-like protein JJL53_03425 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) JJL53_03430 PF03061 Thioesterase superfamily JJL53_03435 PF01618 MotA/TolQ/ExbB proton channel family JJL53_03440 PF02472 Biopolymer transport protein ExbD/TolR JJL53_03450 PF07676 WD40-like Beta Propeller Repeat JJL53_03450 PF04052 TolB amino-terminal domain JJL53_03455 PF00691 OmpA family JJL53_03460 PF13174 Tetratricopeptide repeat JJL53_03460 PF16331 TolA binding protein trimerisation JJL53_03535 PF02445 Quinolinate synthetase A protein JJL53_03540 PF01263 Aldose 1-epimerase JJL53_03545 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJL53_03545 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJL53_03550 PF02446 4-alpha-glucanotransferase JJL53_03555 PF00128 Alpha amylase, catalytic domain JJL53_03555 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJL53_03555 PF02806 Alpha amylase, C-terminal all-beta domain JJL53_03560 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JJL53_03560 PF00128 Alpha amylase, catalytic domain JJL53_03565 PF01641 SelR domain JJL53_03575 PF00293 NUDIX domain JJL53_03580 PF16884 N-terminal domain of oxidoreductase JJL53_03580 PF00107 Zinc-binding dehydrogenase JJL53_03585 PF01047 MarR family JJL53_03600 PF01037 Lrp/AsnC ligand binding domain JJL53_03610 PF07690 Major Facilitator Superfamily JJL53_03630 PF00209 Sodium:neurotransmitter symporter family JJL53_03635 PF00209 Sodium:neurotransmitter symporter family JJL53_03650 PF00392 Bacterial regulatory proteins, gntR family JJL53_03650 PF00155 Aminotransferase class I and II JJL53_03665 PF01177 Asp/Glu/Hydantoin racemase JJL53_03675 PF00501 AMP-binding enzyme JJL53_03685 PF00583 Acetyltransferase (GNAT) family JJL53_03695 PF07728 AAA domain (dynein-related subfamily) JJL53_03695 PF17868 AAA lid domain JJL53_03695 PF12592 Protein of unknown function (DUF3763) JJL53_03700 PF05762 VWA domain containing CoxE-like protein JJL53_03705 PF00990 Diguanylate cyclase, GGDEF domain JJL53_03705 PF00563 EAL domain JJL53_03705 PF13188 PAS domain JJL53_03705 PF03707 Bacterial signalling protein N terminal repeat JJL53_03710 PF00072 Response regulator receiver domain JJL53_03710 PF00990 Diguanylate cyclase, GGDEF domain JJL53_03715 PF00009 Elongation factor Tu GTP binding domain JJL53_03715 PF03144 Elongation factor Tu domain 2 JJL53_03715 PF16658 Class II release factor RF3, C-terminal domain JJL53_03720 PF00583 Acetyltransferase (GNAT) family JJL53_03725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJL53_03740 PF03466 LysR substrate binding domain JJL53_03740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_03745 PF04371 Porphyromonas-type peptidyl-arginine deiminase JJL53_03750 PF01425 Amidase JJL53_03760 PF13358 DDE superfamily endonuclease JJL53_03760 PF13592 Winged helix-turn helix JJL53_03775 PF13737 Transposase DDE domain JJL53_03795 PF00270 DEAD/DEAH box helicase JJL53_03795 PF00271 Helicase conserved C-terminal domain JJL53_03800 PF00990 Diguanylate cyclase, GGDEF domain JJL53_03810 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase JJL53_03825 PF00445 Ribonuclease T2 family JJL53_03835 PF03060 Nitronate monooxygenase JJL53_03865 PF02867 Ribonucleotide reductase, barrel domain JJL53_03865 PF08343 Ribonucleotide reductase N-terminal JJL53_03865 PF00317 Ribonucleotide reductase, all-alpha domain JJL53_03875 PF02562 PhoH-like protein JJL53_03875 PF13638 PIN domain JJL53_03880 PF00005 ABC transporter JJL53_03885 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_03905 PF00694 Aconitase C-terminal domain JJL53_03910 PF00330 Aconitase family (aconitate hydratase) JJL53_03915 PF00180 Isocitrate/isopropylmalate dehydrogenase JJL53_03920 PF00682 HMGL-like JJL53_03920 PF08502 LeuA allosteric (dimerisation) domain JJL53_03930 PF01569 PAP2 superfamily JJL53_03935 PF04101 Glycosyltransferase family 28 C-terminal domain JJL53_03935 PF03033 Glycosyltransferase family 28 N-terminal domain JJL53_03945 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JJL53_03945 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJL53_03945 PF00205 Thiamine pyrophosphate enzyme, central domain JJL53_03950 PF10369 Small subunit of acetolactate synthase JJL53_03955 PF07085 DRTGG domain JJL53_03955 PF01515 Phosphate acetyl/butaryl transferase JJL53_03960 PF00871 Acetokinase family JJL53_03965 PF04217 Protein of unknown function, DUF412 JJL53_03970 PF03887 YfbU domain JJL53_03975 PF00578 AhpC/TSA family JJL53_03980 PF01842 ACT domain JJL53_03985 PF00701 Dihydrodipicolinate synthetase family JJL53_03990 PF06804 NlpB/DapX lipoprotein JJL53_03995 PF01259 SAICAR synthetase JJL53_04000 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_04000 PF01610 Transposase JJL53_04000 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_04010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_04010 PF03466 LysR substrate binding domain JJL53_04035 PF00072 Response regulator receiver domain JJL53_04035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_04035 PF00512 His Kinase A (phospho-acceptor) domain JJL53_04035 PF18415 Histidine kinase receptor ArcB trans-membrane domain JJL53_04035 PF00989 PAS fold JJL53_04035 PF01627 Hpt domain JJL53_04040 PF13286 Phosphohydrolase-associated domain JJL53_04040 PF01966 HD domain JJL53_04050 PF00563 EAL domain JJL53_04050 PF13188 PAS domain JJL53_04050 PF03707 Bacterial signalling protein N terminal repeat JJL53_04050 PF00990 Diguanylate cyclase, GGDEF domain JJL53_04060 PF01609 Transposase DDE domain JJL53_04090 PF03707 Bacterial signalling protein N terminal repeat JJL53_04090 PF00990 Diguanylate cyclase, GGDEF domain JJL53_04090 PF00563 EAL domain JJL53_04095 PF00672 HAMP domain JJL53_04095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_04100 PF02357 Transcription termination factor nusG JJL53_04105 PF13006 Insertion element 4 transposase N-terminal JJL53_04105 PF01609 Transposase DDE domain JJL53_04110 PF03180 NLPA lipoprotein JJL53_04115 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_04120 PF09383 NIL domain JJL53_04120 PF00005 ABC transporter JJL53_04130 PF00480 ROK family JJL53_04135 PF08331 Domain of unknown function (DUF1730) JJL53_04140 PF01256 Carbohydrate kinase JJL53_04140 PF03853 YjeF-related protein N-terminus JJL53_04145 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JJL53_04150 PF01520 N-acetylmuramoyl-L-alanine amidase JJL53_04155 PF08676 MutL C terminal dimerisation domain JJL53_04155 PF01119 DNA mismatch repair protein, C-terminal domain JJL53_04165 PF17209 Hfq protein JJL53_04170 PF01926 50S ribosome-binding GTPase JJL53_04170 PF13167 GTP-binding GTPase N-terminal JJL53_04170 PF16360 GTP-binding GTPase Middle Region JJL53_04175 PF12221 Bacterial membrane protein N terminal JJL53_04175 PF01145 SPFH domain / Band 7 family JJL53_04180 PF01145 SPFH domain / Band 7 family JJL53_04185 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) JJL53_04190 PF00348 Polyprenyl synthetase JJL53_04195 PF00829 Ribosomal prokaryotic L21 protein JJL53_04200 PF01016 Ribosomal L27 protein JJL53_04205 PF01018 GTP1/OBG JJL53_04205 PF01926 50S ribosome-binding GTPase JJL53_04210 PF07670 Nucleoside recognition JJL53_04220 PF00296 Luciferase-like monooxygenase JJL53_04230 PF00149 Calcineurin-like phosphoesterase JJL53_04235 PF04379 ApaG domain JJL53_04240 PF00398 Ribosomal RNA adenine dimethylase JJL53_04245 PF04166 Pyridoxal phosphate biosynthetic protein PdxA JJL53_04250 PF09312 SurA N-terminal domain JJL53_04250 PF00639 PPIC-type PPIASE domain JJL53_04255 PF04453 LPS transport system D JJL53_04255 PF03968 OstA-like protein JJL53_04260 PF01636 Phosphotransferase enzyme family JJL53_04265 PF00483 Nucleotidyl transferase JJL53_04270 PF00226 DnaJ domain JJL53_04270 PF05099 Tellurite resistance protein TerB JJL53_04275 PF13006 Insertion element 4 transposase N-terminal JJL53_04275 PF01609 Transposase DDE domain JJL53_04280 PF00860 Permease family JJL53_04290 PF00005 ABC transporter JJL53_04290 PF12848 ABC transporter JJL53_04295 PF00589 Phage integrase family JJL53_04295 PF12167 Arm DNA-binding domain JJL53_04335 PF04381 Putative exonuclease, RdgC JJL53_04370 PF06630 Enterobacterial exodeoxyribonuclease VIII JJL53_04370 PF12684 PDDEXK-like domain of unknown function (DUF3799) JJL53_04430 PF00772 DnaB-like helicase N terminal domain JJL53_04430 PF03796 DnaB-like helicase C terminal domain JJL53_04450 PF05772 NinB protein JJL53_04455 PF00149 Calcineurin-like phosphoesterase JJL53_04615 PF01464 Transglycosylase SLT domain JJL53_04620 PF00535 Glycosyl transferase family 2 JJL53_04630 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase JJL53_04635 PF01370 NAD dependent epimerase/dehydratase family JJL53_04640 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJL53_04640 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJL53_04640 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JJL53_04650 PF00005 ABC transporter JJL53_04655 PF01032 FecCD transport family JJL53_04665 PF06228 Haem utilisation ChuX/HutX JJL53_04670 PF01243 Pyridoxamine 5'-phosphate oxidase JJL53_04695 PF13737 Transposase DDE domain JJL53_04705 PF12832 MFS_1 like family JJL53_04710 PF00512 His Kinase A (phospho-acceptor) domain JJL53_04710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_04715 PF08329 Chitinase A, N-terminal domain JJL53_04715 PF00704 Glycosyl hydrolases family 18 JJL53_04725 PF12561 ToxR activated gene A lipoprotein domain JJL53_04725 PF17945 Beta/Gamma crystallin JJL53_04730 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_04730 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_04730 PF01610 Transposase JJL53_04735 PF08241 Methyltransferase domain JJL53_04740 PF14706 Transposase DNA-binding JJL53_04740 PF01609 Transposase DDE domain JJL53_04740 PF02281 Transposase Tn5 dimerisation domain JJL53_04745 PF00027 Cyclic nucleotide-binding domain JJL53_04745 PF13545 Crp-like helix-turn-helix domain JJL53_04750 PF02566 OsmC-like protein JJL53_04765 PF00485 Phosphoribulokinase / Uridine kinase family JJL53_04770 PF06794 Uncharacterised protein family (UPF0270) JJL53_04780 PF00561 alpha/beta hydrolase fold JJL53_04785 PF01584 CheW-like domain JJL53_04785 PF00072 Response regulator receiver domain JJL53_04795 PF09526 Probable metal-binding protein (DUF2387) JJL53_04800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_04805 PF04102 SlyX JJL53_04815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJL53_04815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_04820 PF02954 Bacterial regulatory protein, Fis family JJL53_04820 PF00072 Response regulator receiver domain JJL53_04820 PF00158 Sigma-54 interaction domain JJL53_04860 PF03796 DnaB-like helicase C terminal domain JJL53_04860 PF00772 DnaB-like helicase N terminal domain JJL53_04865 PF00842 Alanine racemase, C-terminal domain JJL53_04865 PF01168 Alanine racemase, N-terminal domain JJL53_04870 PF13006 Insertion element 4 transposase N-terminal JJL53_04870 PF01609 Transposase DDE domain JJL53_04875 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JJL53_04875 PF14850 DNA-binding domain of Proline dehydrogenase JJL53_04875 PF01619 Proline dehydrogenase JJL53_04875 PF00171 Aldehyde dehydrogenase family JJL53_04885 PF10415 Fumarase C C-terminus JJL53_04885 PF00206 Lyase JJL53_04890 PF03575 Peptidase family S51 JJL53_04895 PF00196 Bacterial regulatory proteins, luxR family JJL53_04895 PF00072 Response regulator receiver domain JJL53_04900 PF00989 PAS fold JJL53_04900 PF00512 His Kinase A (phospho-acceptor) domain JJL53_04900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_04905 PF13247 4Fe-4S dicluster domain JJL53_04910 PF03916 Polysulphide reductase, NrfD JJL53_04915 PF01568 Molydopterin dinucleotide binding domain JJL53_04915 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJL53_04915 PF00384 Molybdopterin oxidoreductase JJL53_04925 PF00990 Diguanylate cyclase, GGDEF domain JJL53_04925 PF00989 PAS fold JJL53_04925 PF01590 GAF domain JJL53_04925 PF00563 EAL domain JJL53_04950 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJL53_04950 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJL53_04955 PF03466 LysR substrate binding domain JJL53_04955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_04960 PF01810 LysE type translocator JJL53_04970 PF12392 Collagenase JJL53_04970 PF01136 Peptidase family U32 JJL53_04980 PF06906 Protein of unknown function (DUF1272) JJL53_04990 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JJL53_04990 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JJL53_05000 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JJL53_05025 PF00106 short chain dehydrogenase JJL53_05030 PF03573 outer membrane porin, OprD family JJL53_05035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_05045 PF02447 GntP family permease JJL53_05050 PF01370 NAD dependent epimerase/dehydratase family JJL53_05055 PF01261 Xylose isomerase-like TIM barrel JJL53_05060 PF00596 Class II Aldolase and Adducin N-terminal domain JJL53_05065 PF17042 Nucleotide-binding C-terminal domain JJL53_05065 PF07005 Sugar-binding N-terminal domain JJL53_05070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJL53_05070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJL53_05075 PF08220 DeoR-like helix-turn-helix domain JJL53_05075 PF00455 DeoR C terminal sensor domain JJL53_05085 PF07995 Glucose / Sorbosone dehydrogenase JJL53_05090 PF00916 Sulfate permease family JJL53_05090 PF01740 STAS domain JJL53_05095 PF03976 Polyphosphate kinase 2 (PPK2) JJL53_05100 PF00356 Bacterial regulatory proteins, lacI family JJL53_05120 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_05125 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_05130 PF00005 ABC transporter JJL53_05130 PF17912 MalK OB fold domain JJL53_05135 PF04616 Glycosyl hydrolases family 43 JJL53_05135 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain JJL53_05140 PF02264 LamB porin JJL53_05150 PF13737 Transposase DDE domain JJL53_05155 PF02264 LamB porin JJL53_05180 PF00800 Prephenate dehydratase JJL53_05180 PF01817 Chorismate mutase type II JJL53_05205 PF08349 Protein of unknown function (DUF1722) JJL53_05210 PF13411 MerR HTH family regulatory protein JJL53_05215 PF03441 FAD binding domain of DNA photolyase JJL53_05215 PF00875 DNA photolyase JJL53_05225 PF00106 short chain dehydrogenase JJL53_05265 PF00210 Ferritin-like domain JJL53_05270 PF03063 Prismane/CO dehydrogenase family JJL53_05275 PF00175 Oxidoreductase NAD-binding domain JJL53_05275 PF00970 Oxidoreductase FAD-binding domain JJL53_05275 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_05280 PF16363 GDP-mannose 4,6 dehydratase JJL53_05295 PF05598 Transposase domain (DUF772) JJL53_05295 PF01609 Transposase DDE domain JJL53_05315 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A JJL53_05365 PF04002 RadC-like JAB domain JJL53_05400 PF05930 Prophage CP4-57 regulatory protein (AlpA) JJL53_05415 PF01381 Helix-turn-helix JJL53_05440 PF01609 Transposase DDE domain JJL53_05440 PF05598 Transposase domain (DUF772) JJL53_05455 PF13808 DDE_Tnp_1-associated JJL53_05455 PF01609 Transposase DDE domain JJL53_05465 PF01609 Transposase DDE domain JJL53_05480 PF01609 Transposase DDE domain JJL53_05480 PF02281 Transposase Tn5 dimerisation domain JJL53_05480 PF14706 Transposase DNA-binding JJL53_05495 PF13356 Arm DNA-binding domain JJL53_05495 PF00589 Phage integrase family JJL53_05510 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJL53_05510 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJL53_05520 PF01758 Sodium Bile acid symporter family JJL53_05525 PF02281 Transposase Tn5 dimerisation domain JJL53_05525 PF14706 Transposase DNA-binding JJL53_05525 PF01609 Transposase DDE domain JJL53_05530 PF03960 ArsC family JJL53_05535 PF04545 Sigma-70, region 4 JJL53_05535 PF04542 Sigma-70 region 2 JJL53_05555 PF00916 Sulfate permease family JJL53_05555 PF01740 STAS domain JJL53_05560 PF00196 Bacterial regulatory proteins, luxR family JJL53_05560 PF03472 Autoinducer binding domain JJL53_05565 PF05638 Type VI secretion system effector, Hcp JJL53_05570 PF04717 Type VI secretion system, phage-baseplate injector JJL53_05590 PF13358 DDE superfamily endonuclease JJL53_05590 PF13592 Winged helix-turn helix JJL53_05610 PF00665 Integrase core domain JJL53_05615 PF01695 IstB-like ATP binding protein JJL53_05625 PF01965 DJ-1/PfpI family JJL53_05635 PF04461 Protein of unknown function (DUF520) JJL53_05640 PF03502 Nucleoside-specific channel-forming protein, Tsx JJL53_05645 PF07690 Major Facilitator Superfamily JJL53_05655 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJL53_05665 PF05175 Methyltransferase small domain JJL53_05670 PF01722 BolA-like protein JJL53_05675 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) JJL53_05675 PF11973 NQRA C-terminal domain JJL53_05680 PF03116 NQR2, RnfD, RnfE family JJL53_05685 PF04205 FMN-binding domain JJL53_05690 PF02508 Rnf-Nqr subunit, membrane protein JJL53_05695 PF02508 Rnf-Nqr subunit, membrane protein JJL53_05700 PF00970 Oxidoreductase FAD-binding domain JJL53_05700 PF00175 Oxidoreductase NAD-binding domain JJL53_05700 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_05705 PF02424 ApbE family JJL53_05720 PF00817 impB/mucB/samB family JJL53_05720 PF11799 impB/mucB/samB family C-terminal domain JJL53_05720 PF11798 IMS family HHH motif JJL53_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_05725 PF00672 HAMP domain JJL53_05730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_05730 PF03466 LysR substrate binding domain JJL53_05740 PF04241 Protein of unknown function (DUF423) JJL53_05745 PF01728 FtsJ-like methyltransferase JJL53_05745 PF18125 RlmM ferredoxin-like domain JJL53_05755 PF18324 Hypothetical protein TT1725 JJL53_05755 PF00180 Isocitrate/isopropylmalate dehydrogenase JJL53_05760 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJL53_05760 PF01367 5'-3' exonuclease, C-terminal SAM fold JJL53_05765 PF11892 Domain of unknown function (DUF3412) JJL53_05765 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases JJL53_05765 PF03641 Possible lysine decarboxylase JJL53_05770 PF00990 Diguanylate cyclase, GGDEF domain JJL53_05780 PF14489 QueF-like protein JJL53_05780 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term JJL53_05785 PF07348 Syd protein (SUKH-2) JJL53_05790 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) JJL53_05815 PF04287 tRNA pseudouridine synthase C JJL53_05820 PF00849 RNA pseudouridylate synthase JJL53_05825 PF00258 Flavodoxin JJL53_05830 PF13808 DDE_Tnp_1-associated JJL53_05830 PF01609 Transposase DDE domain JJL53_05835 PF02264 LamB porin JJL53_05840 PF07148 Maltose operon periplasmic protein precursor (MalM) JJL53_05845 PF02378 Phosphotransferase system, EIIC JJL53_05845 PF00367 phosphotransferase system, EIIB JJL53_05850 PF11944 Protein of unknown function (DUF3461) JJL53_05855 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal JJL53_05855 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_05855 PF14602 Hexapeptide repeat of succinyl-transferase JJL53_05860 PF01909 Nucleotidyltransferase domain JJL53_05860 PF01966 HD domain JJL53_05860 PF08335 GlnD PII-uridylyltransferase JJL53_05860 PF01842 ACT domain JJL53_05865 PF00557 Metallopeptidase family M24 JJL53_05870 PF00318 Ribosomal protein S2 JJL53_05875 PF00889 Elongation factor TS JJL53_05880 PF00696 Amino acid kinase family JJL53_05885 PF01765 Ribosome recycling factor JJL53_05890 PF01255 Putative undecaprenyl diphosphate synthase JJL53_05900 PF13288 DXP reductoisomerase C-terminal domain JJL53_05900 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JJL53_05900 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JJL53_05905 PF02163 Peptidase family M50 JJL53_05905 PF17820 PDZ domain JJL53_05910 PF01103 Surface antigen JJL53_05910 PF07244 Surface antigen variable number repeat JJL53_05915 PF03938 Outer membrane protein (OmpH-like) JJL53_05920 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD JJL53_05920 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_05925 PF07977 FabA-like domain JJL53_05930 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 JJL53_05930 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_05935 PF02684 Lipid-A-disaccharide synthetase JJL53_05940 PF01351 Ribonuclease HII JJL53_05945 PF02811 PHP domain JJL53_05945 PF14579 Helix-hairpin-helix motif JJL53_05945 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JJL53_05945 PF01336 OB-fold nucleic acid binding domain JJL53_05945 PF07733 Bacterial DNA polymerase III alpha NTPase domain JJL53_05950 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JJL53_05960 PF03466 LysR substrate binding domain JJL53_05960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_05970 PF13520 Amino acid permease JJL53_05975 PF13302 Acetyltransferase (GNAT) domain JJL53_05980 PF12848 ABC transporter JJL53_05980 PF00005 ABC transporter JJL53_05990 PF05649 Peptidase family M13 JJL53_05990 PF01431 Peptidase family M13 JJL53_05995 PF11734 TilS substrate C-terminal domain JJL53_05995 PF09179 TilS substrate binding domain JJL53_05995 PF01171 PP-loop family JJL53_06000 PF00990 Diguanylate cyclase, GGDEF domain JJL53_06005 PF00999 Sodium/hydrogen exchanger family JJL53_06005 PF02080 TrkA-C domain JJL53_06005 PF02254 TrkA-N domain JJL53_06025 PF00196 Bacterial regulatory proteins, luxR family JJL53_06025 PF00072 Response regulator receiver domain JJL53_06035 PF00128 Alpha amylase, catalytic domain JJL53_06040 PF01610 Transposase JJL53_06040 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_06040 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_06055 PF00535 Glycosyl transferase family 2 JJL53_06070 PF01471 Putative peptidoglycan binding domain JJL53_06070 PF03734 L,D-transpeptidase catalytic domain JJL53_06075 PF05951 Bacterial protein of unknown function (DUF882) JJL53_06085 PF03458 UPF0126 domain JJL53_06095 PF02463 RecF/RecN/SMC N terminal domain JJL53_06095 PF06470 SMC proteins Flexible Hinge Domain JJL53_06100 PF04354 ZipA, C-terminal FtsZ-binding domain JJL53_06105 PF01653 NAD-dependent DNA ligase adenylation domain JJL53_06105 PF03120 NAD-dependent DNA ligase OB-fold domain JJL53_06105 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JJL53_06105 PF12826 Helix-hairpin-helix motif JJL53_06105 PF00533 BRCA1 C Terminus (BRCT) domain JJL53_06110 PF13006 Insertion element 4 transposase N-terminal JJL53_06110 PF01609 Transposase DDE domain JJL53_06120 PF13597 Anaerobic ribonucleoside-triphosphate reductase JJL53_06120 PF03477 ATP cone domain JJL53_06130 PF01679 Proteolipid membrane potential modulator JJL53_06150 PF00529 HlyD membrane-fusion protein of T1SS JJL53_06150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_06155 PF01047 MarR family JJL53_06160 PF03390 2-hydroxycarboxylate transporter family JJL53_06165 PF00390 Malic enzyme, N-terminal domain JJL53_06165 PF03949 Malic enzyme, NAD binding domain JJL53_06170 PF00989 PAS fold JJL53_06170 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JJL53_06170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_06170 PF17203 Single cache domain 3 JJL53_06175 PF00072 Response regulator receiver domain JJL53_06175 PF12431 Transcriptional regulator JJL53_06180 PF00892 EamA-like transporter family JJL53_06190 PF00171 Aldehyde dehydrogenase family JJL53_06195 PF02954 Bacterial regulatory protein, Fis family JJL53_06195 PF01590 GAF domain JJL53_06195 PF00158 Sigma-54 interaction domain JJL53_06200 PF00990 Diguanylate cyclase, GGDEF domain JJL53_06200 PF17158 Membrane-associated sensor, integral membrane domain JJL53_06205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_06210 PF00072 Response regulator receiver domain JJL53_06210 PF00486 Transcriptional regulatory protein, C terminal JJL53_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_06215 PF00512 His Kinase A (phospho-acceptor) domain JJL53_06215 PF00989 PAS fold JJL53_06215 PF11808 Phosphate regulon sensor protein PhoR JJL53_06220 PF12849 PBP superfamily domain JJL53_06225 PF01435 Peptidase family M48 JJL53_06235 PF00480 ROK family JJL53_06240 PF03932 CutC family JJL53_06255 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_06255 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJL53_06260 PF00005 ABC transporter JJL53_06275 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_06280 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_06285 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_06290 PF00005 ABC transporter JJL53_06300 PF00293 NUDIX domain JJL53_06305 PF08534 Redoxin JJL53_06310 PF01699 Sodium/calcium exchanger protein JJL53_06315 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJL53_06315 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJL53_06320 PF01235 Sodium:alanine symporter family JJL53_06330 PF00860 Permease family JJL53_06335 PF00072 Response regulator receiver domain JJL53_06335 PF00990 Diguanylate cyclase, GGDEF domain JJL53_06340 PF10692 Protein of unknown function (DUF2498) JJL53_06345 PF01554 MatE JJL53_06350 PF12833 Helix-turn-helix domain JJL53_06355 PF03949 Malic enzyme, NAD binding domain JJL53_06355 PF00390 Malic enzyme, N-terminal domain JJL53_06360 PF00691 OmpA family JJL53_06360 PF01389 OmpA-like transmembrane domain JJL53_06365 PF00872 Transposase, Mutator family JJL53_06370 PF01610 Transposase JJL53_06370 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_06370 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_06375 PF00691 OmpA family JJL53_06375 PF01389 OmpA-like transmembrane domain JJL53_06380 PF00691 OmpA family JJL53_06380 PF01389 OmpA-like transmembrane domain JJL53_06390 PF01609 Transposase DDE domain JJL53_06400 PF00209 Sodium:neurotransmitter symporter family JJL53_06405 PF01734 Patatin-like phospholipase JJL53_06410 PF00990 Diguanylate cyclase, GGDEF domain JJL53_06410 PF05230 MASE2 domain JJL53_06420 PF00873 AcrB/AcrD/AcrF family JJL53_06425 PF04055 Radical SAM superfamily JJL53_06425 PF08497 Radical SAM N-terminal JJL53_06425 PF11842 Domain of unknown function (DUF3362) JJL53_06445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJL53_06450 PF02075 Crossover junction endodeoxyribonuclease RuvC JJL53_06455 PF00230 Major intrinsic protein JJL53_06460 PF01464 Transglycosylase SLT domain JJL53_06460 PF01551 Peptidase family M23 JJL53_06460 PF10145 Phage-related minor tail protein JJL53_06475 PF13396 Phospholipase_D-nuclease N-terminal JJL53_06475 PF13091 PLD-like domain JJL53_06485 PF01842 ACT domain JJL53_06485 PF00551 Formyl transferase JJL53_06490 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JJL53_06500 PF00085 Thioredoxin JJL53_06505 PF01648 4'-phosphopantetheinyl transferase superfamily JJL53_06510 PF00877 NlpC/P60 family JJL53_06515 PF05971 RNA methyltransferase JJL53_06520 PF01575 MaoC like domain JJL53_06530 PF17969 L,D-transpeptidase C-terminal domain JJL53_06530 PF03734 L,D-transpeptidase catalytic domain JJL53_06530 PF01476 LysM domain JJL53_06540 PF01380 SIS domain JJL53_06540 PF01418 Helix-turn-helix domain, rpiR family JJL53_06550 PF12801 4Fe-4S binding domain JJL53_06550 PF04205 FMN-binding domain JJL53_06555 PF18764 Nitrous oxide reductase propeller repeat JJL53_06555 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJL53_06555 PF18793 Nitrous oxide reductase propeller repeat 2 JJL53_06575 PF00005 ABC transporter JJL53_06580 PF12679 ABC-2 family transporter protein JJL53_06585 PF05573 NosL JJL53_06590 PF02416 mttA/Hcf106 family JJL53_06595 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJL53_06615 PF07690 Major Facilitator Superfamily JJL53_06625 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JJL53_06630 PF03466 LysR substrate binding domain JJL53_06630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_06640 PF00512 His Kinase A (phospho-acceptor) domain JJL53_06640 PF00072 Response regulator receiver domain JJL53_06640 PF09308 LuxQ, periplasmic JJL53_06640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_06660 PF13808 DDE_Tnp_1-associated JJL53_06660 PF01609 Transposase DDE domain JJL53_06665 PF10725 Protein of unknown function (DUF2517) JJL53_06670 PF00512 His Kinase A (phospho-acceptor) domain JJL53_06670 PF01627 Hpt domain JJL53_06670 PF00989 PAS fold JJL53_06670 PF00072 Response regulator receiver domain JJL53_06670 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_06675 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JJL53_06680 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase JJL53_06680 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_06685 PF02690 Na+/Pi-cotransporter JJL53_06695 PF13520 Amino acid permease JJL53_06700 PF00324 Amino acid permease JJL53_06710 PF00202 Aminotransferase class-III JJL53_06715 PF00171 Aldehyde dehydrogenase family JJL53_06720 PF01381 Helix-turn-helix JJL53_06720 PF07883 Cupin domain JJL53_06725 PF01266 FAD dependent oxidoreductase JJL53_06745 PF04381 Putative exonuclease, RdgC JJL53_06750 PF13673 Acetyltransferase (GNAT) domain JJL53_06755 PF12320 Type 5 capsule protein repressor C-terminal domain JJL53_06755 PF00149 Calcineurin-like phosphoesterase JJL53_06765 PF01292 Prokaryotic cytochrome b561 JJL53_06770 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJL53_06775 PF00391 PEP-utilising enzyme, mobile domain JJL53_06775 PF05524 PEP-utilising enzyme, N-terminal JJL53_06775 PF02896 PEP-utilising enzyme, TIM barrel domain JJL53_06780 PF00381 PTS HPr component phosphorylation site JJL53_06785 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_06800 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJL53_06800 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJL53_06805 PF01980 tRNA-methyltransferase O JJL53_06805 PF18389 TrmO C-terminal domain JJL53_06825 PF00005 ABC transporter JJL53_06825 PF00664 ABC transporter transmembrane region JJL53_06830 PF00664 ABC transporter transmembrane region JJL53_06830 PF00005 ABC transporter JJL53_06845 PF00072 Response regulator receiver domain JJL53_06845 PF00486 Transcriptional regulatory protein, C terminal JJL53_06855 PF03737 Aldolase/RraA JJL53_06870 PF01546 Peptidase family M20/M25/M40 JJL53_06890 PF13508 Acetyltransferase (GNAT) domain JJL53_06905 PF08463 EcoEI R protein C-terminal JJL53_06905 PF00271 Helicase conserved C-terminal domain JJL53_06905 PF04851 Type III restriction enzyme, res subunit JJL53_06905 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) JJL53_06925 PF01609 Transposase DDE domain JJL53_06935 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system JJL53_06940 PF08401 Domain of unknown function (DUF1738) JJL53_06940 PF13362 Toprim domain JJL53_06940 PF18818 Metallopeptidase superfamily domain JJL53_06960 PF00589 Phage integrase family JJL53_06960 PF13356 Arm DNA-binding domain JJL53_06970 PF01668 SmpB protein JJL53_06975 PF03364 Polyketide cyclase / dehydrase and lipid transport JJL53_06980 PF03658 RnfH family Ubiquitin JJL53_06985 PF13460 NAD(P)H-binding JJL53_06990 PF04355 SmpA / OmlA family JJL53_07000 PF01048 Phosphorylase superfamily JJL53_07005 PF00849 RNA pseudouridylate synthase JJL53_07010 PF01156 Inosine-uridine preferring nucleoside hydrolase JJL53_07025 PF07509 Protein of unknown function (DUF1523) JJL53_07030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_07030 PF00672 HAMP domain JJL53_07030 PF12729 Four helix bundle sensory module for signal transduction JJL53_07035 PF01810 LysE type translocator JJL53_07040 PF03471 Transporter associated domain JJL53_07040 PF00999 Sodium/hydrogen exchanger family JJL53_07040 PF02080 TrkA-C domain JJL53_07050 PF03471 Transporter associated domain JJL53_07050 PF00999 Sodium/hydrogen exchanger family JJL53_07050 PF02080 TrkA-C domain JJL53_07060 PF02557 D-alanyl-D-alanine carboxypeptidase JJL53_07065 PF01546 Peptidase family M20/M25/M40 JJL53_07065 PF07687 Peptidase dimerisation domain JJL53_07070 PF03960 ArsC family JJL53_07075 PF07508 Recombinase JJL53_07075 PF00239 Resolvase, N terminal domain JJL53_07075 PF13408 Recombinase zinc beta ribbon domain JJL53_07085 PF01609 Transposase DDE domain JJL53_07095 PF00239 Resolvase, N terminal domain JJL53_07095 PF02796 Helix-turn-helix domain of resolvase JJL53_07120 PF03605 Anaerobic c4-dicarboxylate membrane transporter JJL53_07125 PF00152 tRNA synthetases class II (D, K and N) JJL53_07125 PF01336 OB-fold nucleic acid binding domain JJL53_07140 PF00202 Aminotransferase class-III JJL53_07145 PF06968 Biotin and Thiamin Synthesis associated domain JJL53_07145 PF04055 Radical SAM superfamily JJL53_07150 PF00155 Aminotransferase class I and II JJL53_07155 PF08241 Methyltransferase domain JJL53_07155 PF12697 Alpha/beta hydrolase family JJL53_07165 PF01435 Peptidase family M48 JJL53_07170 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_07170 PF03473 MOSC domain JJL53_07170 PF03476 MOSC N-terminal beta barrel domain JJL53_07170 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_07170 PF03473 MOSC domain JJL53_07170 PF03476 MOSC N-terminal beta barrel domain JJL53_07175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJL53_07175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJL53_07175 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_07180 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JJL53_07180 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JJL53_07180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JJL53_07180 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JJL53_07180 PF10371 Domain of unknown function JJL53_07185 PF04325 Protein of unknown function (DUF465) JJL53_07195 PF01554 MatE JJL53_07215 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_07220 PF00465 Iron-containing alcohol dehydrogenase JJL53_07230 PF00440 Bacterial regulatory proteins, tetR family JJL53_07230 PF17932 Tetracyclin repressor-like, C-terminal domain JJL53_07235 PF00171 Aldehyde dehydrogenase family JJL53_07245 PF00877 NlpC/P60 family JJL53_07250 PF03466 LysR substrate binding domain JJL53_07250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_07270 PF08003 Protein of unknown function (DUF1698) JJL53_07275 PF13649 Methyltransferase domain JJL53_07280 PF01904 Protein of unknown function DUF72 JJL53_07285 PF01336 OB-fold nucleic acid binding domain JJL53_07285 PF02938 GAD domain JJL53_07285 PF00152 tRNA synthetases class II (D, K and N) JJL53_07290 PF01709 Transcriptional regulator JJL53_07295 PF00884 Sulfatase JJL53_07295 PF08019 Phosphoethanolamine transferase EptA/EptB JJL53_07300 PF01047 MarR family JJL53_07300 PF00480 ROK family JJL53_07305 PF01979 Amidohydrolase family JJL53_07310 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JJL53_07315 PF02378 Phosphotransferase system, EIIC JJL53_07315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJL53_07315 PF00367 phosphotransferase system, EIIB JJL53_07320 PF03173 Putative carbohydrate binding domain JJL53_07320 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain JJL53_07320 PF00728 Glycosyl hydrolase family 20, catalytic domain JJL53_07320 PF02838 Glycosyl hydrolase family 20, domain 2 JJL53_07325 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain JJL53_07325 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJL53_07330 PF01475 Ferric uptake regulator family JJL53_07340 PF00258 Flavodoxin JJL53_07345 PF01402 Ribbon-helix-helix protein, copG family JJL53_07355 PF00561 alpha/beta hydrolase fold JJL53_07360 PF17206 SeqA protein N-terminal domain JJL53_07360 PF03925 SeqA protein C-terminal domain JJL53_07365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJL53_07365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJL53_07365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJL53_07365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJL53_07375 PF01047 MarR family JJL53_07380 PF13406 Transglycosylase SLT domain JJL53_07385 PF01066 CDP-alcohol phosphatidyltransferase JJL53_07390 PF00005 ABC transporter JJL53_07400 PF13416 Bacterial extracellular solute-binding protein JJL53_07405 PF00403 Heavy-metal-associated domain JJL53_07405 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_07405 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_07410 PF02627 Carboxymuconolactone decarboxylase family JJL53_07430 PF01103 Surface antigen JJL53_07430 PF07244 Surface antigen variable number repeat JJL53_07430 PF17243 POTRA domain TamA domain 1 JJL53_07435 PF04357 TamB, inner membrane protein subunit of TAM complex JJL53_07455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JJL53_07465 PF01464 Transglycosylase SLT domain JJL53_07465 PF14718 Soluble lytic murein transglycosylase L domain JJL53_07470 PF00356 Bacterial regulatory proteins, lacI family JJL53_07480 PF03061 Thioesterase superfamily JJL53_07490 PF03372 Endonuclease/Exonuclease/phosphatase family JJL53_07495 PF01476 LysM domain JJL53_07495 PF01464 Transglycosylase SLT domain JJL53_07500 PF00753 Metallo-beta-lactamase superfamily JJL53_07500 PF16123 Hydroxyacylglutathione hydrolase C-terminus JJL53_07505 PF08241 Methyltransferase domain JJL53_07510 PF00075 RNase H JJL53_07515 PF00929 Exonuclease JJL53_07525 PF11849 Domain of unknown function (DUF3369) JJL53_07530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJL53_07530 PF09317 Domain of unknown function (DUF1974) JJL53_07530 PF02770 Acyl-CoA dehydrogenase, middle domain JJL53_07530 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJL53_07535 PF13580 SIS domain JJL53_07540 PF13230 Glutamine amidotransferases class-II JJL53_07550 PF01933 Uncharacterised protein family UPF0052 JJL53_07560 PF00072 Response regulator receiver domain JJL53_07560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_07560 PF00672 HAMP domain JJL53_07560 PF17149 Periplasmic sensor domain found in signal transduction proteins JJL53_07560 PF01627 Hpt domain JJL53_07560 PF00512 His Kinase A (phospho-acceptor) domain JJL53_07570 PF00072 Response regulator receiver domain JJL53_07570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_07570 PF00512 His Kinase A (phospho-acceptor) domain JJL53_07570 PF09456 RcsC Alpha-Beta-Loop (ABL) JJL53_07585 PF00196 Bacterial regulatory proteins, luxR family JJL53_07585 PF00072 Response regulator receiver domain JJL53_07590 PF00672 HAMP domain JJL53_07590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_07590 PF07730 Histidine kinase JJL53_07590 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term JJL53_07595 PF04055 Radical SAM superfamily JJL53_07595 PF06463 Molybdenum Cofactor Synthesis C JJL53_07600 PF13187 4Fe-4S dicluster domain JJL53_07600 PF12838 4Fe-4S dicluster domain JJL53_07610 PF10518 TAT (twin-arginine translocation) pathway signal sequence JJL53_07610 PF00384 Molybdopterin oxidoreductase JJL53_07610 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJL53_07610 PF01568 Molydopterin dinucleotide binding domain JJL53_07615 PF12838 4Fe-4S dicluster domain JJL53_07615 PF12800 4Fe-4S binding domain JJL53_07620 PF12801 4Fe-4S binding domain JJL53_07620 PF13237 4Fe-4S dicluster domain JJL53_07625 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) JJL53_07630 PF03264 NapC/NirT cytochrome c family, N-terminal region JJL53_07635 PF00994 Probable molybdopterin binding domain JJL53_07640 PF01967 MoaC family JJL53_07645 PF02597 ThiS family JJL53_07650 PF02391 MoaE protein JJL53_07660 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_07665 PF03459 TOBE domain JJL53_07665 PF00005 ABC transporter JJL53_07670 PF00561 alpha/beta hydrolase fold JJL53_07675 PF00899 ThiF family JJL53_07680 PF03453 MoeA N-terminal region (domain I and II) JJL53_07680 PF00994 Probable molybdopterin binding domain JJL53_07680 PF03454 MoeA C-terminal region (domain IV) JJL53_07685 PF01227 GTP cyclohydrolase I JJL53_07690 PF17200 Single Cache domain 2 JJL53_07690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_07690 PF00672 HAMP domain JJL53_07695 PF13006 Insertion element 4 transposase N-terminal JJL53_07695 PF01609 Transposase DDE domain JJL53_07700 PF01268 Formate--tetrahydrofolate ligase JJL53_07710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_07710 PF03466 LysR substrate binding domain JJL53_07715 PF04264 YceI-like domain JJL53_07735 PF12323 Helix-turn-helix domain JJL53_07735 PF07282 Putative transposase DNA-binding domain JJL53_07735 PF01385 Probable transposase JJL53_07750 PF01546 Peptidase family M20/M25/M40 JJL53_07750 PF07687 Peptidase dimerisation domain JJL53_07760 PF17810 Arginine decarboxylase helical bundle domain JJL53_07760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJL53_07760 PF17944 Arginine decarboxylase C-terminal helical extension JJL53_07775 PF00990 Diguanylate cyclase, GGDEF domain JJL53_07775 PF03707 Bacterial signalling protein N terminal repeat JJL53_07775 PF00563 EAL domain JJL53_07780 PF00300 Histidine phosphatase superfamily (branch 1) JJL53_07785 PF00271 Helicase conserved C-terminal domain JJL53_07785 PF04851 Type III restriction enzyme, res subunit JJL53_07805 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JJL53_07805 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JJL53_07810 PF01479 S4 domain JJL53_07810 PF00849 RNA pseudouridylate synthase JJL53_07815 PF07690 Major Facilitator Superfamily JJL53_07825 PF03466 LysR substrate binding domain JJL53_07825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_07835 PF10689 Protein of unknown function (DUF2496) JJL53_07850 PF04391 Protein of unknown function (DUF533) JJL53_07855 PF01609 Transposase DDE domain JJL53_07855 PF13006 Insertion element 4 transposase N-terminal JJL53_07865 PF01609 Transposase DDE domain JJL53_07865 PF13006 Insertion element 4 transposase N-terminal JJL53_07875 PF04542 Sigma-70 region 2 JJL53_07875 PF08281 Sigma-70, region 4 JJL53_07895 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_07895 PF01610 Transposase JJL53_07895 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_07900 PF01609 Transposase DDE domain JJL53_07905 PF01654 Cytochrome bd terminal oxidase subunit I JJL53_07910 PF02322 Cytochrome bd terminal oxidase subunit II JJL53_07920 PF07690 Major Facilitator Superfamily JJL53_07925 PF00248 Aldo/keto reductase family JJL53_07950 PF03466 LysR substrate binding domain JJL53_07950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_07955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJL53_07955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JJL53_07960 PF00230 Major intrinsic protein JJL53_07970 PF01609 Transposase DDE domain JJL53_07970 PF13808 DDE_Tnp_1-associated JJL53_07980 PF00455 DeoR C terminal sensor domain JJL53_07980 PF08220 DeoR-like helix-turn-helix domain JJL53_07985 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JJL53_07985 PF01266 FAD dependent oxidoreductase JJL53_07990 PF03009 Glycerophosphoryl diester phosphodiesterase family JJL53_07995 PF00793 DAHP synthetase I family JJL53_08000 PF01817 Chorismate mutase type II JJL53_08000 PF02153 Prephenate dehydrogenase JJL53_08005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_08005 PF03466 LysR substrate binding domain JJL53_08010 PF04219 Protein of unknown function, DUF JJL53_08015 PF03974 Ecotin JJL53_08035 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJL53_08035 PF00326 Prolyl oligopeptidase family JJL53_08040 PF00593 TonB dependent receptor JJL53_08040 PF07715 TonB-dependent Receptor Plug Domain JJL53_08045 PF11893 Domain of unknown function (DUF3413) JJL53_08045 PF00884 Sulfatase JJL53_08050 PF07208 Protein of unknown function (DUF1414) JJL53_08055 PF04245 37-kD nucleoid-associated bacterial protein JJL53_08060 PF01609 Transposase DDE domain JJL53_08070 PF01547 Bacterial extracellular solute-binding protein JJL53_08075 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08075 PF14785 Maltose transport system permease protein MalF P2 domain JJL53_08080 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08085 PF00005 ABC transporter JJL53_08085 PF08402 TOBE domain JJL53_08090 PF03976 Polyphosphate kinase 2 (PPK2) JJL53_08095 PF00561 alpha/beta hydrolase fold JJL53_08110 PF01385 Probable transposase JJL53_08110 PF12323 Helix-turn-helix domain JJL53_08110 PF07282 Putative transposase DNA-binding domain JJL53_08120 PF01594 AI-2E family transporter JJL53_08130 PF01435 Peptidase family M48 JJL53_08130 PF13181 Tetratricopeptide repeat JJL53_08135 PF00578 AhpC/TSA family JJL53_08140 PF03960 ArsC family JJL53_08155 PF12323 Helix-turn-helix domain JJL53_08155 PF07282 Putative transposase DNA-binding domain JJL53_08155 PF01385 Probable transposase JJL53_08160 PF13006 Insertion element 4 transposase N-terminal JJL53_08160 PF01609 Transposase DDE domain JJL53_08165 PF03956 Lysine exporter LysO JJL53_08170 PF00005 ABC transporter JJL53_08175 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_08180 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08185 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08190 PF05159 Capsule polysaccharide biosynthesis protein JJL53_08195 PF05159 Capsule polysaccharide biosynthesis protein JJL53_08200 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JJL53_08235 PF04321 RmlD substrate binding domain JJL53_08240 PF16363 GDP-mannose 4,6 dehydratase JJL53_08245 PF00483 Nucleotidyl transferase JJL53_08255 PF00535 Glycosyl transferase family 2 JJL53_08265 PF01609 Transposase DDE domain JJL53_08275 PF01609 Transposase DDE domain JJL53_08280 PF01609 Transposase DDE domain JJL53_08285 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JJL53_08285 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JJL53_08325 PF00005 ABC transporter JJL53_08330 PF01061 ABC-2 type transporter JJL53_08335 PF02563 Polysaccharide biosynthesis/export protein JJL53_08335 PF10531 SLBB domain JJL53_08345 PF13808 DDE_Tnp_1-associated JJL53_08345 PF01609 Transposase DDE domain JJL53_08365 PF04055 Radical SAM superfamily JJL53_08370 PF03707 Bacterial signalling protein N terminal repeat JJL53_08370 PF00990 Diguanylate cyclase, GGDEF domain JJL53_08370 PF00563 EAL domain JJL53_08375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_08375 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_08390 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain JJL53_08390 PF00207 Alpha-2-macroglobulin family JJL53_08390 PF07703 Alpha-2-macroglobulin bait region domain JJL53_08390 PF17962 Bacterial macroglobulin domain 6 JJL53_08390 PF11974 Bacterial alpha-2-macroglobulin MG3 domain JJL53_08390 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain JJL53_08390 PF01835 MG2 domain JJL53_08390 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain JJL53_08390 PF07678 A-macroglobulin TED domain JJL53_08395 PF06832 Penicillin-Binding Protein C-terminus Family JJL53_08395 PF00912 Transglycosylase JJL53_08395 PF00905 Penicillin binding protein transpeptidase domain JJL53_08405 PF02568 Thiamine biosynthesis protein (ThiI) JJL53_08405 PF02926 THUMP domain JJL53_08415 PF03458 UPF0126 domain JJL53_08420 PF00669 Bacterial flagellin N-terminal helical region JJL53_08420 PF00700 Bacterial flagellin C-terminal helical region JJL53_08430 PF02465 Flagellar hook-associated protein 2 N-terminus JJL53_08430 PF07196 Flagellin hook IN motif JJL53_08430 PF07195 Flagellar hook-associated protein 2 C-terminus JJL53_08435 PF02561 Flagellar protein FliS JJL53_08450 PF13808 DDE_Tnp_1-associated JJL53_08450 PF01609 Transposase DDE domain JJL53_08475 PF01497 Periplasmic binding protein JJL53_08485 PF01048 Phosphorylase superfamily JJL53_08490 PF02535 ZIP Zinc transporter JJL53_08500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_08505 PF00633 Helix-hairpin-helix motif JJL53_08505 PF10576 Iron-sulfur binding domain of endonuclease III JJL53_08505 PF00730 HhH-GPD superfamily base excision DNA repair protein JJL53_08510 PF02508 Rnf-Nqr subunit, membrane protein JJL53_08515 PF04205 FMN-binding domain JJL53_08520 PF03116 NQR2, RnfD, RnfE family JJL53_08525 PF13375 RnfC Barrel sandwich hybrid domain JJL53_08525 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJL53_08525 PF12838 4Fe-4S dicluster domain JJL53_08525 PF10531 SLBB domain JJL53_08530 PF04060 Putative Fe-S cluster JJL53_08535 PF02508 Rnf-Nqr subunit, membrane protein JJL53_08540 PF00892 EamA-like transporter family JJL53_08550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_08550 PF08447 PAS fold JJL53_08550 PF13426 PAS domain JJL53_08560 PF12241 Trans-2-enoyl-CoA reductase catalytic region JJL53_08560 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase JJL53_08560 PF07055 Enoyl reductase FAD binding domain JJL53_08570 PF00155 Aminotransferase class I and II JJL53_08580 PF00462 Glutaredoxin JJL53_08585 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family JJL53_08590 PF04851 Type III restriction enzyme, res subunit JJL53_08590 PF00271 Helicase conserved C-terminal domain JJL53_08595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_08595 PF00529 HlyD membrane-fusion protein of T1SS JJL53_08600 PF11742 Protein of unknown function (DUF3302) JJL53_08610 PF12323 Helix-turn-helix domain JJL53_08610 PF01385 Probable transposase JJL53_08610 PF07282 Putative transposase DNA-binding domain JJL53_08620 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJL53_08620 PF12795 Mechanosensitive ion channel porin domain JJL53_08620 PF00924 Mechanosensitive ion channel JJL53_08625 PF02554 Carbon starvation protein CstA JJL53_08630 PF04397 LytTr DNA-binding domain JJL53_08630 PF00072 Response regulator receiver domain JJL53_08635 PF07694 5TMR of 5TMR-LYT JJL53_08635 PF06580 Histidine kinase JJL53_08640 PF11871 Domain of unknown function (DUF3391) JJL53_08640 PF01966 HD domain JJL53_08645 PF00171 Aldehyde dehydrogenase family JJL53_08645 PF00465 Iron-containing alcohol dehydrogenase JJL53_08650 PF01914 MarC family integral membrane protein JJL53_08660 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08665 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_08665 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_08670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_08670 PF00005 ABC transporter JJL53_08675 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_08675 PF00005 ABC transporter JJL53_08680 PF03741 Integral membrane protein TerC family JJL53_08685 PF01168 Alanine racemase, N-terminal domain JJL53_08685 PF00842 Alanine racemase, C-terminal domain JJL53_08695 PF00375 Sodium:dicarboxylate symporter family JJL53_08710 PF01979 Amidohydrolase family JJL53_08725 PF01230 HIT domain JJL53_08760 PF12323 Helix-turn-helix domain JJL53_08770 PF01385 Probable transposase JJL53_08770 PF07282 Putative transposase DNA-binding domain JJL53_08770 PF12323 Helix-turn-helix domain JJL53_08775 PF13721 SecD export protein N-terminal TM region JJL53_08775 PF02355 Protein export membrane protein JJL53_08775 PF07549 SecD/SecF GG Motif JJL53_08780 PF02355 Protein export membrane protein JJL53_08780 PF07549 SecD/SecF GG Motif JJL53_08790 PF05661 Protein of unknown function (DUF808) JJL53_08800 PF01432 Peptidase family M3 JJL53_08800 PF08439 Oligopeptidase F JJL53_08805 PF05728 Uncharacterised protein family (UPF0227) JJL53_08810 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_08820 PF01906 Putative heavy-metal-binding JJL53_08840 PF00884 Sulfatase JJL53_08850 PF01842 ACT domain JJL53_08850 PF00696 Amino acid kinase family JJL53_08860 PF00583 Acetyltransferase (GNAT) family JJL53_08860 PF00696 Amino acid kinase family JJL53_08865 PF01625 Peptide methionine sulfoxide reductase JJL53_08880 PF04237 YjbR JJL53_08890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_08890 PF03466 LysR substrate binding domain JJL53_08895 PF02652 L-lactate permease JJL53_08900 PF02754 Cysteine-rich domain JJL53_08905 PF02589 LUD domain JJL53_08905 PF13183 4Fe-4S dicluster domain JJL53_08905 PF11870 Domain of unknown function (DUF3390) JJL53_08910 PF02589 LUD domain JJL53_08915 PF01565 FAD binding domain JJL53_08915 PF02913 FAD linked oxidases, C-terminal domain JJL53_08920 PF05598 Transposase domain (DUF772) JJL53_08920 PF01609 Transposase DDE domain JJL53_08930 PF02687 FtsX-like permease family JJL53_08930 PF12704 MacB-like periplasmic core domain JJL53_08935 PF00005 ABC transporter JJL53_08945 PF03600 Citrate transporter JJL53_08955 PF07690 Major Facilitator Superfamily JJL53_08975 PF01593 Flavin containing amine oxidoreductase JJL53_08980 PF03239 Iron permease FTR1 family JJL53_09010 PF14403 Circularly permuted ATP-grasp type 2 JJL53_09010 PF04168 A predicted alpha-helical domain with a conserved ER motif. JJL53_09015 PF14403 Circularly permuted ATP-grasp type 2 JJL53_09055 PF01609 Transposase DDE domain JJL53_09105 PF01740 STAS domain JJL53_09105 PF00916 Sulfate permease family JJL53_09120 PF05598 Transposase domain (DUF772) JJL53_09120 PF01609 Transposase DDE domain JJL53_09125 PF13662 Toprim domain JJL53_09125 PF02132 RecR protein JJL53_09130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_09130 PF00183 Hsp90 protein JJL53_09135 PF05191 Adenylate kinase, active site lid JJL53_09140 PF00762 Ferrochelatase JJL53_09150 PF00294 pfkB family carbohydrate kinase JJL53_09170 PF03707 Bacterial signalling protein N terminal repeat JJL53_09170 PF00990 Diguanylate cyclase, GGDEF domain JJL53_09170 PF00563 EAL domain JJL53_09175 PF00483 Nucleotidyl transferase JJL53_09185 PF07273 Protein of unknown function (DUF1439) JJL53_09190 PF00425 chorismate binding enzyme JJL53_09195 PF00501 AMP-binding enzyme JJL53_09195 PF13193 AMP-binding enzyme C-terminal domain JJL53_09215 PF00872 Transposase, Mutator family JJL53_09230 PF00975 Thioesterase domain JJL53_09230 PF00550 Phosphopantetheine attachment site JJL53_09230 PF00668 Condensation domain JJL53_09230 PF13193 AMP-binding enzyme C-terminal domain JJL53_09230 PF00501 AMP-binding enzyme JJL53_09240 PF00668 Condensation domain JJL53_09240 PF00550 Phosphopantetheine attachment site JJL53_09240 PF07993 Male sterility protein JJL53_09240 PF13193 AMP-binding enzyme C-terminal domain JJL53_09240 PF00501 AMP-binding enzyme JJL53_09245 PF13193 AMP-binding enzyme C-terminal domain JJL53_09245 PF00668 Condensation domain JJL53_09245 PF00550 Phosphopantetheine attachment site JJL53_09245 PF00975 Thioesterase domain JJL53_09245 PF00501 AMP-binding enzyme JJL53_09250 PF01497 Periplasmic binding protein JJL53_09255 PF01648 4'-phosphopantetheinyl transferase superfamily JJL53_09255 PF17837 4'-phosphopantetheinyl transferase N-terminal domain JJL53_09260 PF00005 ABC transporter JJL53_09265 PF01032 FecCD transport family JJL53_09270 PF01032 FecCD transport family JJL53_09275 PF07715 TonB-dependent Receptor Plug Domain JJL53_09275 PF00593 TonB dependent receptor JJL53_09290 PF11143 Protein of unknown function (DUF2919) JJL53_09295 PF01544 CorA-like Mg2+ transporter protein JJL53_09310 PF01012 Electron transfer flavoprotein domain JJL53_09315 PF00766 Electron transfer flavoprotein FAD-binding domain JJL53_09315 PF01012 Electron transfer flavoprotein domain JJL53_09320 PF00266 Aminotransferase class-V JJL53_09325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJL53_09330 PF00793 DAHP synthetase I family JJL53_09335 PF03741 Integral membrane protein TerC family JJL53_09345 PF08891 YfcL protein JJL53_09350 PF00501 AMP-binding enzyme JJL53_09355 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region JJL53_09355 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JJL53_09360 PF04172 LrgB-like family JJL53_09365 PF03788 LrgA family JJL53_09380 PF08411 Exonuclease C-terminal JJL53_09380 PF00929 Exonuclease JJL53_09390 PF01609 Transposase DDE domain JJL53_09390 PF13006 Insertion element 4 transposase N-terminal JJL53_09395 PF09924 Uncharacterised conserved protein (DUF2156) JJL53_09395 PF03706 Lysylphosphatidylglycerol synthase TM region JJL53_09405 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_09410 PF00795 Carbon-nitrogen hydrolase JJL53_09415 PF00155 Aminotransferase class I and II JJL53_09420 PF03466 LysR substrate binding domain JJL53_09420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_09425 PF11762 L-arabinose isomerase C-terminal domain JJL53_09425 PF02610 L-arabinose isomerase JJL53_09430 PF00596 Class II Aldolase and Adducin N-terminal domain JJL53_09435 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JJL53_09440 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJL53_09445 PF00005 ABC transporter JJL53_09460 PF07670 Nucleoside recognition JJL53_09465 PF07670 Nucleoside recognition JJL53_09470 PF01979 Amidohydrolase family JJL53_09490 PF02311 AraC-like ligand binding domain JJL53_09490 PF12833 Helix-turn-helix domain JJL53_09495 PF00444 Ribosomal protein L36 JJL53_09500 PF01197 Ribosomal protein L31 JJL53_09515 PF01863 Protein of unknown function DUF45 JJL53_09530 PF03606 C4-dicarboxylate anaerobic carrier JJL53_09540 PF01609 Transposase DDE domain JJL53_09540 PF13808 DDE_Tnp_1-associated JJL53_09555 PF00665 Integrase core domain JJL53_09560 PF01695 IstB-like ATP binding protein JJL53_09580 PF13808 DDE_Tnp_1-associated JJL53_09580 PF01609 Transposase DDE domain JJL53_09595 PF00665 Integrase core domain JJL53_09600 PF01695 IstB-like ATP binding protein JJL53_09620 PF01609 Transposase DDE domain JJL53_09620 PF13808 DDE_Tnp_1-associated JJL53_09640 PF01609 Transposase DDE domain JJL53_09640 PF13808 DDE_Tnp_1-associated JJL53_09650 PF01609 Transposase DDE domain JJL53_09655 PF01609 Transposase DDE domain JJL53_09655 PF13808 DDE_Tnp_1-associated JJL53_09680 PF04536 TPM domain JJL53_09690 PF03411 Penicillin-insensitive murein endopeptidase JJL53_09700 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) JJL53_09705 PF00248 Aldo/keto reductase family JJL53_09720 PF01212 Beta-eliminating lyase JJL53_09730 PF00072 Response regulator receiver domain JJL53_09735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_09735 PF03466 LysR substrate binding domain JJL53_09745 PF03707 Bacterial signalling protein N terminal repeat JJL53_09745 PF00990 Diguanylate cyclase, GGDEF domain JJL53_09745 PF13188 PAS domain JJL53_09745 PF00563 EAL domain JJL53_09750 PF03806 AbgT putative transporter family JJL53_09755 PF00881 Nitroreductase family JJL53_09770 PF07690 Major Facilitator Superfamily JJL53_09775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_09775 PF03466 LysR substrate binding domain JJL53_09780 PF00925 GTP cyclohydrolase II JJL53_09785 PF02224 Cytidylate kinase JJL53_09790 PF00575 S1 RNA binding domain JJL53_09795 PF00216 Bacterial DNA-binding protein JJL53_09805 PF18073 Rubredoxin metal binding domain JJL53_09810 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JJL53_09825 PF06508 Queuosine biosynthesis protein QueC JJL53_09830 PF04055 Radical SAM superfamily JJL53_09835 PF12843 Putative quorum-sensing-regulated virulence factor JJL53_09840 PF01923 Cobalamin adenosyltransferase JJL53_09850 PF01609 Transposase DDE domain JJL53_09850 PF13808 DDE_Tnp_1-associated JJL53_09855 PF00816 H-NS histone family JJL53_09860 PF03553 Na+/H+ antiporter family JJL53_09865 PF00265 Thymidine kinase JJL53_09875 PF10722 Putative bacterial sensory transduction regulator JJL53_09910 PF01609 Transposase DDE domain JJL53_09940 PF02646 RmuC family JJL53_09950 PF08241 Methyltransferase domain JJL53_09970 PF13657 HipA N-terminal domain JJL53_09970 PF07804 HipA-like C-terminal domain JJL53_09995 PF01609 Transposase DDE domain JJL53_10055 PF01609 Transposase DDE domain JJL53_10055 PF13006 Insertion element 4 transposase N-terminal JJL53_10080 PF01609 Transposase DDE domain JJL53_10080 PF13808 DDE_Tnp_1-associated JJL53_10085 PF13808 DDE_Tnp_1-associated JJL53_10085 PF01609 Transposase DDE domain JJL53_10095 PF01609 Transposase DDE domain JJL53_10095 PF05598 Transposase domain (DUF772) JJL53_10120 PF00436 Single-strand binding protein family JJL53_10125 PF13438 Domain of unknown function (DUF4113) JJL53_10125 PF00817 impB/mucB/samB family JJL53_10125 PF11799 impB/mucB/samB family C-terminal domain JJL53_10125 PF11798 IMS family HHH motif JJL53_10130 PF00717 Peptidase S24-like JJL53_10135 PF01610 Transposase JJL53_10135 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_10135 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_10200 PF00266 Aminotransferase class-V JJL53_10210 PF01609 Transposase DDE domain JJL53_10210 PF13808 DDE_Tnp_1-associated JJL53_10255 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JJL53_10255 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JJL53_10260 PF01053 Cys/Met metabolism PLP-dependent enzyme JJL53_10270 PF13460 NAD(P)H-binding JJL53_10275 PF13808 DDE_Tnp_1-associated JJL53_10275 PF01609 Transposase DDE domain JJL53_10280 PF03466 LysR substrate binding domain JJL53_10280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_10285 PF00106 short chain dehydrogenase JJL53_10290 PF06445 GyrI-like small molecule binding domain JJL53_10290 PF12833 Helix-turn-helix domain JJL53_10295 PF00593 TonB dependent receptor JJL53_10295 PF07715 TonB-dependent Receptor Plug Domain JJL53_10305 PF13006 Insertion element 4 transposase N-terminal JJL53_10305 PF01609 Transposase DDE domain JJL53_10310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_10310 PF03466 LysR substrate binding domain JJL53_10315 PF01717 Cobalamin-independent synthase, Catalytic domain JJL53_10315 PF08267 Cobalamin-independent synthase, N-terminal domain JJL53_10320 PF02272 DHHA1 domain JJL53_10320 PF01368 DHH family JJL53_10320 PF00571 CBS domain JJL53_10320 PF12627 Probable RNA and SrmB- binding site of polymerase A JJL53_10320 PF01743 Poly A polymerase head domain JJL53_10335 PF01266 FAD dependent oxidoreductase JJL53_10340 PF04244 Deoxyribodipyrimidine photo-lyase-related protein JJL53_10350 PF00768 D-alanyl-D-alanine carboxypeptidase JJL53_10355 PF03918 Cytochrome C biogenesis protein JJL53_10360 PF08534 Redoxin JJL53_10365 PF01578 Cytochrome C assembly protein JJL53_10365 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JJL53_10370 PF03916 Polysulphide reductase, NrfD JJL53_10375 PF00037 4Fe-4S binding domain JJL53_10375 PF13247 4Fe-4S dicluster domain JJL53_10380 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) JJL53_10380 PF13435 Cytochrome c554 and c-prime JJL53_10385 PF02335 Cytochrome c552 JJL53_10395 PF13183 4Fe-4S dicluster domain JJL53_10395 PF02754 Cysteine-rich domain JJL53_10400 PF00890 FAD binding domain JJL53_10405 PF04324 BFD-like [2Fe-2S] binding domain JJL53_10405 PF01266 FAD dependent oxidoreductase JJL53_10410 PF02810 SEC-C motif JJL53_10415 PF17200 Single Cache domain 2 JJL53_10415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_10415 PF00672 HAMP domain JJL53_10420 PF01047 MarR family JJL53_10420 PF00480 ROK family JJL53_10440 PF00072 Response regulator receiver domain JJL53_10445 PF01970 Tripartite tricarboxylate transporter TctA family JJL53_10460 PF01464 Transglycosylase SLT domain JJL53_10460 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_10465 PF06826 Predicted Permease Membrane Region JJL53_10465 PF02080 TrkA-C domain JJL53_10475 PF17757 UvrB interaction domain JJL53_10475 PF12344 Ultra-violet resistance protein B JJL53_10475 PF02151 UvrB/uvrC motif JJL53_10475 PF04851 Type III restriction enzyme, res subunit JJL53_10475 PF00271 Helicase conserved C-terminal domain JJL53_10485 PF09335 SNARE associated Golgi protein JJL53_10490 PF02600 Disulfide bond formation protein DsbB JJL53_10495 PF06450 Bacterial Na+/H+ antiporter B (NhaB) JJL53_10500 PF07840 FadR C-terminal domain JJL53_10500 PF00392 Bacterial regulatory proteins, gntR family JJL53_10505 PF04293 SpoVR like protein JJL53_10510 PF04285 Protein of unknown function (DUF444) JJL53_10515 PF08298 PrkA AAA domain JJL53_10515 PF06798 PrkA serine protein kinase C-terminal domain JJL53_10520 PF00270 DEAD/DEAH box helicase JJL53_10520 PF00271 Helicase conserved C-terminal domain JJL53_10520 PF00570 HRDC domain JJL53_10520 PF16124 RecQ zinc-binding JJL53_10520 PF09382 RQC domain JJL53_10525 PF00375 Sodium:dicarboxylate symporter family JJL53_10530 PF03222 Tryptophan/tyrosine permease family JJL53_10535 PF13808 DDE_Tnp_1-associated JJL53_10535 PF01609 Transposase DDE domain JJL53_10545 PF01609 Transposase DDE domain JJL53_10545 PF13808 DDE_Tnp_1-associated JJL53_10555 PF00293 NUDIX domain JJL53_10560 PF00425 chorismate binding enzyme JJL53_10560 PF04715 Anthranilate synthase component I, N terminal region JJL53_10580 PF00343 Carbohydrate phosphorylase JJL53_10590 PF00939 Sodium:sulfate symporter transmembrane region JJL53_10595 PF00085 Thioredoxin JJL53_10600 PF00672 HAMP domain JJL53_10600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_10600 PF00072 Response regulator receiver domain JJL53_10600 PF01627 Hpt domain JJL53_10600 PF00512 His Kinase A (phospho-acceptor) domain JJL53_10600 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJL53_10605 PF00005 ABC transporter JJL53_10605 PF00664 ABC transporter transmembrane region JJL53_10610 PF00664 ABC transporter transmembrane region JJL53_10610 PF00005 ABC transporter JJL53_10620 PF01609 Transposase DDE domain JJL53_10620 PF13808 DDE_Tnp_1-associated JJL53_10625 PF12323 Helix-turn-helix domain JJL53_10640 PF01575 MaoC like domain JJL53_10645 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus JJL53_10645 PF00561 alpha/beta hydrolase fold JJL53_10665 PF08543 Phosphomethylpyrimidine kinase JJL53_10670 PF03992 Antibiotic biosynthesis monooxygenase JJL53_10675 PF01261 Xylose isomerase-like TIM barrel JJL53_10680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJL53_10680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJL53_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_10685 PF03466 LysR substrate binding domain JJL53_10695 PF03279 Bacterial lipid A biosynthesis acyltransferase JJL53_10700 PF03279 Bacterial lipid A biosynthesis acyltransferase JJL53_10720 PF00136 DNA polymerase family B JJL53_10720 PF03104 DNA polymerase family B, exonuclease domain JJL53_10750 PF01554 MatE JJL53_10755 PF06786 Uncharacterised protein family (UPF0253) JJL53_10760 PF00677 Lumazine binding domain JJL53_10770 PF07282 Putative transposase DNA-binding domain JJL53_10770 PF01385 Probable transposase JJL53_10770 PF12323 Helix-turn-helix domain JJL53_10780 PF13419 Haloacid dehalogenase-like hydrolase JJL53_10785 PF02222 ATP-grasp domain JJL53_10785 PF01370 NAD dependent epimerase/dehydratase family JJL53_10790 PF00892 EamA-like transporter family JJL53_10795 PF02525 Flavodoxin-like fold JJL53_10820 PF17783 CvfB-like winged helix domain JJL53_10820 PF13509 S1 domain JJL53_10830 PF04269 Protein of unknown function, DUF440 JJL53_10835 PF00912 Transglycosylase JJL53_10840 PF04269 Protein of unknown function, DUF440 JJL53_10845 PF03776 Septum formation topological specificity factor MinE JJL53_10850 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JJL53_10855 PF03775 Septum formation inhibitor MinC, C-terminal domain JJL53_10855 PF05209 Septum formation inhibitor MinC, N-terminal domain JJL53_10860 PF05166 YcgL domain JJL53_10865 PF13406 Transglycosylase SLT domain JJL53_10875 PF03315 Serine dehydratase beta chain JJL53_10875 PF03313 Serine dehydratase alpha chain JJL53_10880 PF03315 Serine dehydratase beta chain JJL53_10880 PF03313 Serine dehydratase alpha chain JJL53_10885 PF06865 Pyrimidine/purine nucleoside phosphorylase JJL53_10890 PF00375 Sodium:dicarboxylate symporter family JJL53_10895 PF00376 MerR family regulatory protein JJL53_10895 PF09278 MerR, DNA binding JJL53_10900 PF00108 Thiolase, N-terminal domain JJL53_10900 PF02803 Thiolase, C-terminal domain JJL53_10905 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJL53_10910 PF08774 VRR-NUC domain JJL53_10910 PF18081 Fanconi anemia-associated nuclease SAP domain JJL53_10915 PF07929 Plasmid pRiA4b ORF-3-like protein JJL53_10930 PF00293 NUDIX domain JJL53_10955 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_10975 PF03050 Transposase IS66 family JJL53_10975 PF13007 Transposase C of IS166 homeodomain JJL53_10975 PF13005 zinc-finger binding domain of transposase IS66 JJL53_10975 PF13817 IS66 C-terminal element JJL53_10990 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJL53_10995 PF00563 EAL domain JJL53_10995 PF08668 HDOD domain JJL53_11000 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJL53_11005 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) JJL53_11025 PF13519 von Willebrand factor type A domain JJL53_11025 PF07584 Aerotolerance regulator N-terminal JJL53_11030 PF07728 AAA domain (dynein-related subfamily) JJL53_11030 PF17863 AAA lid domain JJL53_11030 PF13519 von Willebrand factor type A domain JJL53_11040 PF01882 Protein of unknown function DUF58 JJL53_11050 PF17863 AAA lid domain JJL53_11050 PF07726 ATPase family associated with various cellular activities (AAA) JJL53_11055 PF00108 Thiolase, N-terminal domain JJL53_11055 PF02803 Thiolase, C-terminal domain JJL53_11060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJL53_11060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJL53_11060 PF00378 Enoyl-CoA hydratase/isomerase JJL53_11070 PF07152 YaeQ protein JJL53_11105 PF07690 Major Facilitator Superfamily JJL53_11110 PF00005 ABC transporter JJL53_11140 PF01610 Transposase JJL53_11140 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_11140 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_11145 PF05433 Glycine zipper 2TM domain JJL53_11150 PF00501 AMP-binding enzyme JJL53_11150 PF13193 AMP-binding enzyme C-terminal domain JJL53_11155 PF08279 HTH domain JJL53_11155 PF13280 WYL domain JJL53_11165 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JJL53_11165 PF01502 Phosphoribosyl-AMP cyclohydrolase JJL53_11170 PF00977 Histidine biosynthesis protein JJL53_11175 PF00072 Response regulator receiver domain JJL53_11175 PF01627 Hpt domain JJL53_11175 PF00512 His Kinase A (phospho-acceptor) domain JJL53_11175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_11185 PF00072 Response regulator receiver domain JJL53_11190 PF00977 Histidine biosynthesis protein JJL53_11195 PF00117 Glutamine amidotransferase class-I JJL53_11205 PF00155 Aminotransferase class I and II JJL53_11210 PF00815 Histidinol dehydrogenase JJL53_11215 PF01634 ATP phosphoribosyltransferase JJL53_11215 PF08029 HisG, C-terminal domain JJL53_11225 PF04851 Type III restriction enzyme, res subunit JJL53_11225 PF13307 Helicase C-terminal domain JJL53_11230 PF00814 Glycoprotease family JJL53_11240 PF00561 alpha/beta hydrolase fold JJL53_11245 PF00501 AMP-binding enzyme JJL53_11245 PF13193 AMP-binding enzyme C-terminal domain JJL53_11250 PF01612 3'-5' exonuclease JJL53_11250 PF00570 HRDC domain JJL53_11305 PF02371 Transposase IS116/IS110/IS902 family JJL53_11305 PF01548 Transposase JJL53_11320 PF01207 Dihydrouridine synthase (Dus) JJL53_11330 PF01609 Transposase DDE domain JJL53_11345 PF00156 Phosphoribosyl transferase domain JJL53_11350 PF12170 DNA polymerase III tau subunit V interacting with alpha JJL53_11350 PF12169 DNA polymerase III subunits gamma and tau domain III JJL53_11350 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding JJL53_11355 PF02575 YbaB/EbfC DNA-binding family JJL53_11360 PF00857 Isochorismatase family JJL53_11365 PF02678 Pirin JJL53_11365 PF05726 Pirin C-terminal cupin domain JJL53_11370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_11370 PF03466 LysR substrate binding domain JJL53_11375 PF07670 Nucleoside recognition JJL53_11385 PF01368 DHH family JJL53_11385 PF02272 DHHA1 domain JJL53_11385 PF01743 Poly A polymerase head domain JJL53_11385 PF00571 CBS domain JJL53_11390 PF04408 Helicase associated domain (HA2) JJL53_11390 PF00270 DEAD/DEAH box helicase JJL53_11390 PF11898 Domain of unknown function (DUF3418) JJL53_11390 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold JJL53_11390 PF00271 Helicase conserved C-terminal domain JJL53_11400 PF01386 Ribosomal L25p family JJL53_11405 PF00672 HAMP domain JJL53_11405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_11405 PF00512 His Kinase A (phospho-acceptor) domain JJL53_11405 PF01627 Hpt domain JJL53_11405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJL53_11405 PF00072 Response regulator receiver domain JJL53_11410 PF00072 Response regulator receiver domain JJL53_11415 PF00753 Metallo-beta-lactamase superfamily JJL53_11425 PF00586 AIR synthase related protein, N-terminal domain JJL53_11425 PF02769 AIR synthase related protein, C-terminal domain JJL53_11435 PF10672 S-adenosylmethionine-dependent methyltransferase JJL53_11435 PF17785 PUA-like domain JJL53_11440 PF12729 Four helix bundle sensory module for signal transduction JJL53_11440 PF00672 HAMP domain JJL53_11440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_11445 PF00708 Acylphosphatase JJL53_11455 PF09334 tRNA synthetases class I (M) JJL53_11455 PF08264 Anticodon-binding domain of tRNA JJL53_11455 PF01588 Putative tRNA binding domain JJL53_11460 PF10609 NUBPL iron-transfer P-loop NTPase JJL53_11465 PF00485 Phosphoribulokinase / Uridine kinase family JJL53_11470 PF00692 dUTPase JJL53_11475 PF01384 Phosphate transporter family JJL53_11480 PF00665 Integrase core domain JJL53_11495 PF01479 S4 domain JJL53_11495 PF00849 RNA pseudouridylate synthase JJL53_11500 PF13419 Haloacid dehalogenase-like hydrolase JJL53_11505 PF02545 Maf-like protein JJL53_11515 PF02620 Large ribosomal RNA subunit accumulation protein YceD JJL53_11520 PF01783 Ribosomal L32p protein family JJL53_11525 PF02504 Fatty acid synthesis protein JJL53_11530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JJL53_11530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JJL53_11535 PF00698 Acyl transferase domain JJL53_11545 PF00550 Phosphopantetheine attachment site JJL53_11550 PF02801 Beta-ketoacyl synthase, C-terminal domain JJL53_11550 PF00109 Beta-ketoacyl synthase, N-terminal domain JJL53_11555 PF01063 Amino-transferase class IV JJL53_11560 PF02618 YceG-like family JJL53_11565 PF02223 Thymidylate kinase JJL53_11570 PF09115 DNA polymerase III, delta subunit, C terminal JJL53_11575 PF01026 TatD related DNase JJL53_11580 PF00589 Phage integrase family JJL53_11595 PF02470 MlaD protein JJL53_11600 PF04403 Paraquat-inducible protein A JJL53_11610 PF07130 YebG protein JJL53_11620 PF13654 AAA domain JJL53_11620 PF05362 Lon protease (S16) C-terminal proteolytic domain JJL53_11625 PF07977 FabA-like domain JJL53_11630 PF04957 Ribosome modulation factor JJL53_11640 PF12848 ABC transporter JJL53_11640 PF16326 ABC transporter C-terminal domain JJL53_11640 PF00005 ABC transporter JJL53_11650 PF01170 Putative RNA methylase family UPF0020 JJL53_11650 PF02926 THUMP domain JJL53_11650 PF10672 S-adenosylmethionine-dependent methyltransferase JJL53_11655 PF07126 Cell-division protein ZapC JJL53_11660 PF01180 Dihydroorotate dehydrogenase JJL53_11665 PF05088 Bacterial NAD-glutamate dehydrogenase JJL53_11675 PF17432 Domain of unknown function (DUF3458_C) ARM repeats JJL53_11675 PF11940 Domain of unknown function (DUF3458) Ig-like fold JJL53_11675 PF01433 Peptidase family M1 domain JJL53_11680 PF03572 Peptidase family S41 JJL53_11680 PF17804 Tail specific protease N-terminal domain JJL53_11680 PF00595 PDZ domain JJL53_11680 PF11818 C-terminal domain of tail specific protease (DUF3340) JJL53_11685 PF04352 ProQ/FINO family JJL53_11685 PF17516 ProQ C-terminal domain JJL53_11690 PF13185 GAF domain JJL53_11700 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJL53_11715 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP JJL53_11715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JJL53_11725 PF00403 Heavy-metal-associated domain JJL53_11740 PF00027 Cyclic nucleotide-binding domain JJL53_11740 PF13545 Crp-like helix-turn-helix domain JJL53_11745 PF00582 Universal stress protein family JJL53_11750 PF01171 PP-loop family JJL53_11765 PF00043 Glutathione S-transferase, C-terminal domain JJL53_11765 PF02798 Glutathione S-transferase, N-terminal domain JJL53_11770 PF05025 RbsD / FucU transport protein family JJL53_11775 PF00005 ABC transporter JJL53_11780 PF02653 Branched-chain amino acid transport system / permease component JJL53_11785 PF13407 Periplasmic binding protein domain JJL53_11790 PF00294 pfkB family carbohydrate kinase JJL53_11795 PF00356 Bacterial regulatory proteins, lacI family JJL53_11800 PF00563 EAL domain JJL53_11800 PF03707 Bacterial signalling protein N terminal repeat JJL53_11800 PF00990 Diguanylate cyclase, GGDEF domain JJL53_11810 PF02146 Sir2 family JJL53_11825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_11825 PF09456 RcsC Alpha-Beta-Loop (ABL) JJL53_11825 PF00512 His Kinase A (phospho-acceptor) domain JJL53_11825 PF00072 Response regulator receiver domain JJL53_11830 PF00216 Bacterial DNA-binding protein JJL53_11835 PF03483 B3/4 domain JJL53_11835 PF03484 tRNA synthetase B5 domain JJL53_11835 PF03147 Ferredoxin-fold anticodon binding domain JJL53_11835 PF01588 Putative tRNA binding domain JJL53_11835 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JJL53_11840 PF01409 tRNA synthetases class II core domain (F) JJL53_11840 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JJL53_11845 PF00453 Ribosomal protein L20 JJL53_11850 PF01632 Ribosomal protein L35 JJL53_11855 PF05198 Translation initiation factor IF-3, N-terminal domain JJL53_11855 PF00707 Translation initiation factor IF-3, C-terminal domain JJL53_11860 PF02824 TGS domain JJL53_11860 PF03129 Anticodon binding domain JJL53_11860 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJL53_11860 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JJL53_11875 PF04055 Radical SAM superfamily JJL53_11885 PF00521 DNA gyrase/topoisomerase IV, subunit A JJL53_11885 PF03989 DNA gyrase C-terminal domain, beta-propeller JJL53_11895 PF13419 Haloacid dehalogenase-like hydrolase JJL53_11900 PF02867 Ribonucleotide reductase, barrel domain JJL53_11900 PF00317 Ribonucleotide reductase, all-alpha domain JJL53_11900 PF03477 ATP cone domain JJL53_11905 PF00268 Ribonucleotide reductase, small chain JJL53_11910 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_11915 PF06725 3D domain JJL53_11915 PF03562 MltA specific insert domain JJL53_11920 PF06945 Protein of unknown function (DUF1289) JJL53_11925 PF02378 Phosphotransferase system, EIIC JJL53_11925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_11930 PF00294 pfkB family carbohydrate kinase JJL53_11935 PF00381 PTS HPr component phosphorylation site JJL53_11935 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJL53_11940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJL53_11940 PF00356 Bacterial regulatory proteins, lacI family JJL53_11945 PF03222 Tryptophan/tyrosine permease family JJL53_11950 PF01124 MAPEG family JJL53_11955 PF00270 DEAD/DEAH box helicase JJL53_11955 PF00271 Helicase conserved C-terminal domain JJL53_11965 PF01264 Chorismate synthase JJL53_11970 PF05175 Methyltransferase small domain JJL53_11975 PF01713 Smr domain JJL53_11985 PF00300 Histidine phosphatase superfamily (branch 1) JJL53_12005 PF08329 Chitinase A, N-terminal domain JJL53_12005 PF00704 Glycosyl hydrolases family 18 JJL53_12015 PF08274 PhnA Zinc-Ribbon JJL53_12015 PF03831 PhnA domain JJL53_12020 PF01810 LysE type translocator JJL53_12030 PF02567 Phenazine biosynthesis-like protein JJL53_12060 PF03330 Lytic transglycolase JJL53_12060 PF05036 Sporulation related domain JJL53_12065 PF04310 MukB N-terminal JJL53_12065 PF16330 MukB hinge domain JJL53_12070 PF04288 MukE-like family JJL53_12075 PF03882 MukF winged-helix domain JJL53_12075 PF17193 MukF C-terminal domain JJL53_12075 PF17192 MukF middle domain JJL53_12080 PF13847 Methyltransferase domain JJL53_12085 PF02698 DUF218 domain JJL53_12090 PF00121 Triosephosphate isomerase JJL53_12095 PF00365 Phosphofructokinase JJL53_12100 PF01546 Peptidase family M20/M25/M40 JJL53_12100 PF07687 Peptidase dimerisation domain JJL53_12105 PF13419 Haloacid dehalogenase-like hydrolase JJL53_12110 PF02789 Cytosol aminopeptidase family, N-terminal domain JJL53_12110 PF00883 Cytosol aminopeptidase family, catalytic domain JJL53_12165 PF11398 Protein of unknown function (DUF2813) JJL53_12170 PF12833 Helix-turn-helix domain JJL53_12170 PF01965 DJ-1/PfpI family JJL53_12180 PF03466 LysR substrate binding domain JJL53_12180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_12185 PF01925 Sulfite exporter TauE/SafE JJL53_12190 PF03942 DTW domain JJL53_12195 PF18029 Glyoxalase-like domain JJL53_12195 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_12200 PF01820 D-ala D-ala ligase N-terminus JJL53_12200 PF07478 D-ala D-ala ligase C-terminus JJL53_12210 PF00255 Glutathione peroxidase JJL53_12215 PF00270 DEAD/DEAH box helicase JJL53_12215 PF00271 Helicase conserved C-terminal domain JJL53_12225 PF02694 Uncharacterised BCR, YnfA/UPF0060 family JJL53_12235 PF01928 CYTH domain JJL53_12240 PF00293 NUDIX domain JJL53_12245 PF13673 Acetyltransferase (GNAT) domain JJL53_12250 PF01609 Transposase DDE domain JJL53_12260 PF00005 ABC transporter JJL53_12265 PF02653 Branched-chain amino acid transport system / permease component JJL53_12270 PF02653 Branched-chain amino acid transport system / permease component JJL53_12290 PF01609 Transposase DDE domain JJL53_12290 PF13808 DDE_Tnp_1-associated JJL53_12300 PF01609 Transposase DDE domain JJL53_12310 PF00239 Resolvase, N terminal domain JJL53_12310 PF02796 Helix-turn-helix domain of resolvase JJL53_12330 PF04002 RadC-like JAB domain JJL53_12355 PF01609 Transposase DDE domain JJL53_12360 PF01420 Type I restriction modification DNA specificity domain JJL53_12365 PF01609 Transposase DDE domain JJL53_12380 PF02384 N-6 DNA Methylase JJL53_12400 PF01925 Sulfite exporter TauE/SafE JJL53_12405 PF13520 Amino acid permease JJL53_12410 PF13006 Insertion element 4 transposase N-terminal JJL53_12410 PF01609 Transposase DDE domain JJL53_12420 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JJL53_12420 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JJL53_12425 PF00378 Enoyl-CoA hydratase/isomerase JJL53_12430 PF00378 Enoyl-CoA hydratase/isomerase JJL53_12435 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJL53_12435 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJL53_12435 PF02770 Acyl-CoA dehydrogenase, middle domain JJL53_12440 PF00171 Aldehyde dehydrogenase family JJL53_12445 PF02770 Acyl-CoA dehydrogenase, middle domain JJL53_12445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJL53_12445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJL53_12450 PF01039 Carboxyl transferase domain JJL53_12455 PF00378 Enoyl-CoA hydratase/isomerase JJL53_12460 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJL53_12460 PF00364 Biotin-requiring enzyme JJL53_12460 PF00289 Biotin carboxylase, N-terminal domain JJL53_12460 PF02785 Biotin carboxylase C-terminal domain JJL53_12465 PF00682 HMGL-like JJL53_12470 PF09278 MerR, DNA binding JJL53_12470 PF00376 MerR family regulatory protein JJL53_12480 PF01184 GPR1/FUN34/yaaH family JJL53_12485 PF06167 Glucose-regulated metallo-peptidase M90 JJL53_12490 PF00583 Acetyltransferase (GNAT) family JJL53_12495 PF01235 Sodium:alanine symporter family JJL53_12500 PF00378 Enoyl-CoA hydratase/isomerase JJL53_12515 PF04341 Protein of unknown function, DUF485 JJL53_12520 PF00474 Sodium:solute symporter family JJL53_12525 PF12848 ABC transporter JJL53_12525 PF00005 ABC transporter JJL53_12530 PF13145 PPIC-type PPIASE domain JJL53_12535 PF00216 Bacterial DNA-binding protein JJL53_12540 PF05362 Lon protease (S16) C-terminal proteolytic domain JJL53_12540 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_12540 PF02190 ATP-dependent protease La (LON) substrate-binding domain JJL53_12545 PF10431 C-terminal, D2-small domain, of ClpB protein JJL53_12545 PF06689 ClpX C4-type zinc finger JJL53_12545 PF07724 AAA domain (Cdc48 subfamily) JJL53_12550 PF00574 Clp protease JJL53_12555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JJL53_12555 PF05698 Bacterial trigger factor protein (TF) C-terminus JJL53_12555 PF05697 Bacterial trigger factor protein (TF) JJL53_12570 PF02687 FtsX-like permease family JJL53_12570 PF12704 MacB-like periplasmic core domain JJL53_12575 PF00005 ABC transporter JJL53_12580 PF12704 MacB-like periplasmic core domain JJL53_12580 PF02687 FtsX-like permease family JJL53_12590 PF03461 TRCF domain JJL53_12590 PF17757 UvrB interaction domain JJL53_12590 PF00270 DEAD/DEAH box helicase JJL53_12590 PF00271 Helicase conserved C-terminal domain JJL53_12590 PF02559 CarD-like/TRCF domain JJL53_12595 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain JJL53_12600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_12605 PF01609 Transposase DDE domain JJL53_12610 PF00892 EamA-like transporter family JJL53_12620 PF00300 Histidine phosphatase superfamily (branch 1) JJL53_12625 PF00675 Insulinase (Peptidase family M16) JJL53_12625 PF05193 Peptidase M16 inactive domain JJL53_12625 PF16187 Middle or third domain of peptidase_M16 JJL53_12630 PF05724 Thiopurine S-methyltransferase (TPMT) JJL53_12650 PF01609 Transposase DDE domain JJL53_12650 PF13006 Insertion element 4 transposase N-terminal JJL53_12655 PF00117 Glutamine amidotransferase class-I JJL53_12655 PF00958 GMP synthase C terminal domain JJL53_12655 PF02540 NAD synthase JJL53_12660 PF00571 CBS domain JJL53_12660 PF00478 IMP dehydrogenase / GMP reductase domain JJL53_12670 PF01373 Glycosyl hydrolase family 14 JJL53_12670 PF03423 Carbohydrate binding domain (family 25) JJL53_12670 PF00128 Alpha amylase, catalytic domain JJL53_12680 PF13742 OB-fold nucleic acid binding domain JJL53_12680 PF02601 Exonuclease VII, large subunit JJL53_12700 PF00691 OmpA family JJL53_12720 PF13689 YfiR/HmsC-like JJL53_12725 PF18024 Helix-turn-helix domain JJL53_12725 PF00158 Sigma-54 interaction domain JJL53_12735 PF01329 Pterin 4 alpha carbinolamine dehydratase JJL53_12740 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JJL53_12745 PF05128 Domain of unknown function (DUF697) JJL53_12750 PF04317 YcjX-like family, DUF463 JJL53_12760 PF06667 Phage shock protein B JJL53_12765 PF04012 PspA/IM30 family JJL53_12770 PF02954 Bacterial regulatory protein, Fis family JJL53_12770 PF00158 Sigma-54 interaction domain JJL53_12775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_12780 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_12785 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_12785 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_12790 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_12790 PF00005 ABC transporter JJL53_12795 PF00005 ABC transporter JJL53_12800 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) JJL53_12805 PF00356 Bacterial regulatory proteins, lacI family JJL53_12810 PF02378 Phosphotransferase system, EIIC JJL53_12810 PF00367 phosphotransferase system, EIIB JJL53_12815 PF00232 Glycosyl hydrolase family 1 JJL53_12820 PF00156 Phosphoribosyl transferase domain JJL53_12825 PF02674 Colicin V production protein JJL53_12830 PF02403 Seryl-tRNA synthetase N-terminal domain JJL53_12830 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JJL53_12835 PF12002 MgsA AAA+ ATPase C terminal JJL53_12835 PF16193 AAA C-terminal domain JJL53_12835 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_12840 PF03548 Outer membrane lipoprotein carrier protein LolA JJL53_12845 PF13491 4TM region of DNA translocase FtsK/SpoIIIE JJL53_12845 PF09397 Ftsk gamma domain JJL53_12845 PF17854 FtsK alpha domain JJL53_12845 PF01580 FtsK/SpoIIIE family JJL53_12850 PF01037 Lrp/AsnC ligand binding domain JJL53_12855 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JJL53_12855 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JJL53_12860 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_12865 PF05230 MASE2 domain JJL53_12865 PF00990 Diguanylate cyclase, GGDEF domain JJL53_12870 PF05433 Glycine zipper 2TM domain JJL53_12875 PF03588 Leucyl/phenylalanyl-tRNA protein transferase JJL53_12880 PF04377 Arginine-tRNA-protein transferase, C terminus JJL53_12880 PF04376 Arginine-tRNA-protein transferase, N terminus JJL53_12885 PF01176 Translation initiation factor 1A / IF-1 JJL53_12890 PF10431 C-terminal, D2-small domain, of ClpB protein JJL53_12890 PF02861 Clp amino terminal domain, pathogenicity island component JJL53_12890 PF17871 AAA lid domain JJL53_12890 PF07724 AAA domain (Cdc48 subfamily) JJL53_12890 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_12895 PF02617 ATP-dependent Clp protease adaptor protein ClpS JJL53_12900 PF00313 'Cold-shock' DNA-binding domain JJL53_12905 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJL53_12905 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJL53_12915 PF00893 Small Multidrug Resistance protein JJL53_12925 PF18381 YcaO cyclodehydratase C-terminal domain JJL53_12925 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding JJL53_12930 PF01226 Formate/nitrite transporter JJL53_12935 PF01228 Glycine radical JJL53_12935 PF02901 Pyruvate formate lyase-like JJL53_12940 PF03692 Putative zinc- or iron-chelating domain JJL53_12950 PF13006 Insertion element 4 transposase N-terminal JJL53_12950 PF01609 Transposase DDE domain JJL53_12955 PF02629 CoA binding domain JJL53_12955 PF00549 CoA-ligase JJL53_12960 PF08442 ATP-grasp domain JJL53_12960 PF00549 CoA-ligase JJL53_12965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJL53_12965 PF00364 Biotin-requiring enzyme JJL53_12965 PF02817 e3 binding domain JJL53_12970 PF16078 2-oxoglutarate dehydrogenase N-terminus JJL53_12970 PF00676 Dehydrogenase E1 component JJL53_12970 PF02779 Transketolase, pyrimidine binding domain JJL53_12970 PF16870 2-oxoglutarate dehydrogenase C-terminal JJL53_12975 PF13085 2Fe-2S iron-sulfur cluster binding domain JJL53_12980 PF02910 Fumarate reductase flavoprotein C-term JJL53_12980 PF00890 FAD binding domain JJL53_12985 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JJL53_12990 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JJL53_12995 PF00285 Citrate synthase, C-terminal domain JJL53_13010 PF00109 Beta-ketoacyl synthase, N-terminal domain JJL53_13010 PF02801 Beta-ketoacyl synthase, C-terminal domain JJL53_13015 PF01266 FAD dependent oxidoreductase JJL53_13015 PF05430 S-adenosyl-L-methionine-dependent methyltransferase JJL53_13045 PF13808 DDE_Tnp_1-associated JJL53_13045 PF01609 Transposase DDE domain JJL53_13055 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JJL53_13060 PF04221 RelB antitoxin JJL53_13075 PF00440 Bacterial regulatory proteins, tetR family JJL53_13075 PF02909 Tetracyclin repressor-like, C-terminal domain JJL53_13095 PF01609 Transposase DDE domain JJL53_13120 PF18766 SWI2/SNF2 ATPase JJL53_13120 PF11867 Domain of unknown function (DUF3387) JJL53_13120 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JJL53_13130 PF13006 Insertion element 4 transposase N-terminal JJL53_13130 PF01609 Transposase DDE domain JJL53_13135 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JJL53_13140 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JJL53_13145 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JJL53_13145 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JJL53_13155 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit JJL53_13155 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region JJL53_13160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJL53_13160 PF00384 Molybdopterin oxidoreductase JJL53_13160 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JJL53_13165 PF00146 NADH dehydrogenase JJL53_13170 PF12838 4Fe-4S dicluster domain JJL53_13175 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JJL53_13180 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JJL53_13185 PF00361 Proton-conducting membrane transporter JJL53_13185 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JJL53_13190 PF00361 Proton-conducting membrane transporter JJL53_13195 PF00361 Proton-conducting membrane transporter JJL53_13200 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal JJL53_13200 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JJL53_13200 PF02769 AIR synthase related protein, C-terminal domain JJL53_13205 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_13205 PF01464 Transglycosylase SLT domain JJL53_13215 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JJL53_13215 PF01926 50S ribosome-binding GTPase JJL53_13220 PF13360 PQQ-like domain JJL53_13225 PF09976 Tetratricopeptide repeat-like domain JJL53_13230 PF13393 Histidyl-tRNA synthetase JJL53_13230 PF03129 Anticodon binding domain JJL53_13235 PF04551 GcpE protein JJL53_13240 PF13464 Domain of unknown function (DUF4115) JJL53_13250 PF04055 Radical SAM superfamily JJL53_13255 PF00334 Nucleoside diphosphate kinase JJL53_13260 PF00883 Cytosol aminopeptidase family, catalytic domain JJL53_13260 PF12404 Peptidase JJL53_13265 PF00883 Cytosol aminopeptidase family, catalytic domain JJL53_13265 PF12404 Peptidase JJL53_13270 PF00111 2Fe-2S iron-sulfur cluster binding domain JJL53_13275 PF00012 Hsp70 protein JJL53_13280 PF07743 HSCB C-terminal oligomerisation domain JJL53_13280 PF00226 DnaJ domain JJL53_13285 PF01521 Iron-sulphur cluster biosynthesis JJL53_13290 PF01592 NifU-like N terminal domain JJL53_13295 PF00266 Aminotransferase class-V JJL53_13300 PF02082 Transcriptional regulator JJL53_13305 PF00588 SpoU rRNA Methylase family JJL53_13315 PF02036 SCP-2 sterol transfer family JJL53_13325 PF14706 Transposase DNA-binding JJL53_13325 PF02281 Transposase Tn5 dimerisation domain JJL53_13325 PF01609 Transposase DDE domain JJL53_13335 PF01136 Peptidase family U32 JJL53_13340 PF13181 Tetratricopeptide repeat JJL53_13340 PF07719 Tetratricopeptide repeat JJL53_13345 PF00581 Rhodanese-like domain JJL53_13350 PF07549 SecD/SecF GG Motif JJL53_13350 PF02355 Protein export membrane protein JJL53_13355 PF13721 SecD export protein N-terminal TM region JJL53_13355 PF02355 Protein export membrane protein JJL53_13355 PF07549 SecD/SecF GG Motif JJL53_13360 PF02699 Preprotein translocase subunit JJL53_13365 PF01702 Queuine tRNA-ribosyltransferase JJL53_13370 PF02547 Queuosine biosynthesis protein JJL53_13375 PF00571 CBS domain JJL53_13380 PF00578 AhpC/TSA family JJL53_13380 PF10417 C-terminal domain of 1-Cys peroxiredoxin JJL53_13385 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_13385 PF13192 Thioredoxin domain JJL53_13390 PF07690 Major Facilitator Superfamily JJL53_13400 PF08241 Methyltransferase domain JJL53_13410 PF00576 HIUase/Transthyretin family JJL53_13420 PF00072 Response regulator receiver domain JJL53_13420 PF00486 Transcriptional regulatory protein, C terminal JJL53_13425 PF01609 Transposase DDE domain JJL53_13430 PF01609 Transposase DDE domain JJL53_13430 PF13808 DDE_Tnp_1-associated JJL53_13440 PF02384 N-6 DNA Methylase JJL53_13440 PF12161 HsdM N-terminal domain JJL53_13455 PF02347 Glycine cleavage system P-protein JJL53_13460 PF01597 Glycine cleavage H-protein JJL53_13465 PF01571 Aminomethyltransferase folate-binding domain JJL53_13465 PF08669 Glycine cleavage T-protein C-terminal barrel domain JJL53_13470 PF01494 FAD binding domain JJL53_13475 PF01494 FAD binding domain JJL53_13480 PF03695 Uncharacterised protein family (UPF0149) JJL53_13485 PF05164 Cell division protein ZapA JJL53_13495 PF07690 Major Facilitator Superfamily JJL53_13515 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_13515 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_13520 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_13525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_13530 PF00043 Glutathione S-transferase, C-terminal domain JJL53_13530 PF02798 Glutathione S-transferase, N-terminal domain JJL53_13545 PF00459 Inositol monophosphatase family JJL53_13550 PF00691 OmpA family JJL53_13550 PF18393 MotY N-terminal domain JJL53_13575 PF00929 Exonuclease JJL53_13580 PF13726 Na+-H+ antiporter family JJL53_13580 PF03553 Na+/H+ antiporter family JJL53_13585 PF07690 Major Facilitator Superfamily JJL53_13590 PF03466 LysR substrate binding domain JJL53_13590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_13595 PF00271 Helicase conserved C-terminal domain JJL53_13595 PF00270 DEAD/DEAH box helicase JJL53_13595 PF03880 DbpA RNA binding domain JJL53_13600 PF03061 Thioesterase superfamily JJL53_13610 PF13183 4Fe-4S dicluster domain JJL53_13610 PF01565 FAD binding domain JJL53_13610 PF02913 FAD linked oxidases, C-terminal domain JJL53_13620 PF03741 Integral membrane protein TerC family JJL53_13620 PF03471 Transporter associated domain JJL53_13625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJL53_13630 PF00962 Adenosine/AMP deaminase JJL53_13635 PF13344 Haloacid dehalogenase-like hydrolase JJL53_13645 PF00733 Asparagine synthase JJL53_13645 PF13537 Glutamine amidotransferase domain JJL53_13655 PF02798 Glutathione S-transferase, N-terminal domain JJL53_13655 PF14497 Glutathione S-transferase, C-terminal domain JJL53_13665 PF04209 homogentisate 1,2-dioxygenase JJL53_13670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_13680 PF00849 RNA pseudouridylate synthase JJL53_13685 PF08448 PAS fold JJL53_13685 PF00990 Diguanylate cyclase, GGDEF domain JJL53_13690 PF01609 Transposase DDE domain JJL53_13690 PF13006 Insertion element 4 transposase N-terminal JJL53_13695 PF08447 PAS fold JJL53_13695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_13700 PF13193 AMP-binding enzyme C-terminal domain JJL53_13700 PF00501 AMP-binding enzyme JJL53_13730 PF14870 Photosynthesis system II assembly factor YCF48 JJL53_13735 PF07044 Protein of unknown function (DUF1329) JJL53_13745 PF01144 Coenzyme A transferase JJL53_13750 PF01144 Coenzyme A transferase JJL53_13755 PF03601 Conserved hypothetical protein 698 JJL53_13765 PF07690 Major Facilitator Superfamily JJL53_13770 PF05853 beta-keto acid cleavage enzyme JJL53_13775 PF02668 Taurine catabolism dioxygenase TauD, TfdA family JJL53_13780 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_13780 PF00107 Zinc-binding dehydrogenase JJL53_13790 PF00285 Citrate synthase, C-terminal domain JJL53_13795 PF00694 Aconitase C-terminal domain JJL53_13795 PF00330 Aconitase family (aconitate hydratase) JJL53_13800 PF04303 PrpF protein JJL53_13810 PF01027 Inhibitor of apoptosis-promoting Bax1 JJL53_13815 PF12805 FUSC-like inner membrane protein yccS JJL53_13820 PF04358 DsrC like protein JJL53_13825 PF05036 Sporulation related domain JJL53_13830 PF02875 Mur ligase family, glutamate ligase domain JJL53_13830 PF08245 Mur ligase middle domain JJL53_13835 PF17848 Acetyl-coA carboxylase zinc finger domain JJL53_13835 PF01039 Carboxyl transferase domain JJL53_13840 PF01416 tRNA pseudouridine synthase JJL53_13850 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJL53_13850 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJL53_13855 PF11890 Domain of unknown function (DUF3410) JJL53_13855 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJL53_13855 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJL53_13860 PF01569 PAP2 superfamily JJL53_13865 PF03180 NLPA lipoprotein JJL53_13885 PF00005 ABC transporter JJL53_13890 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JJL53_13890 PF02896 PEP-utilising enzyme, TIM barrel domain JJL53_13890 PF00391 PEP-utilising enzyme, mobile domain JJL53_13895 PF03618 Kinase/pyrophosphorylase JJL53_13905 PF00324 Amino acid permease JJL53_13955 PF13006 Insertion element 4 transposase N-terminal JJL53_13955 PF01609 Transposase DDE domain JJL53_13985 PF00665 Integrase core domain JJL53_13990 PF01695 IstB-like ATP binding protein JJL53_14000 PF16199 Radical_SAM C-terminal domain JJL53_14000 PF04055 Radical SAM superfamily JJL53_14005 PF01609 Transposase DDE domain JJL53_14010 PF00310 Glutamine amidotransferases class-II JJL53_14010 PF04898 Glutamate synthase central domain JJL53_14010 PF01645 Conserved region in glutamate synthase JJL53_14010 PF01493 GXGXG motif JJL53_14015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster JJL53_14015 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_14020 PF00005 ABC transporter JJL53_14030 PF01609 Transposase DDE domain JJL53_14045 PF13808 DDE_Tnp_1-associated JJL53_14045 PF01609 Transposase DDE domain JJL53_14065 PF14521 Lysine-specific metallo-endopeptidase JJL53_14075 PF00270 DEAD/DEAH box helicase JJL53_14075 PF00271 Helicase conserved C-terminal domain JJL53_14090 PF08378 Nuclease-related domain JJL53_14095 PF07759 Protein of unknown function (DUF1615) JJL53_14110 PF01609 Transposase DDE domain JJL53_14110 PF13808 DDE_Tnp_1-associated JJL53_14120 PF02142 MGS-like domain JJL53_14120 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JJL53_14120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJL53_14125 PF00117 Glutamine amidotransferase class-I JJL53_14125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JJL53_14130 PF05173 Dihydrodipicolinate reductase, C-terminus JJL53_14130 PF01113 Dihydrodipicolinate reductase, N-terminus JJL53_14140 PF01812 5-formyltetrahydrofolate cyclo-ligase family JJL53_14145 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JJL53_14150 PF01842 ACT domain JJL53_14150 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJL53_14150 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJL53_14155 PF01219 Prokaryotic diacylglycerol kinase JJL53_14160 PF00793 DAHP synthetase I family JJL53_14165 PF00005 ABC transporter JJL53_14170 PF01032 FecCD transport family JJL53_14185 PF00437 Type II/IV secretion system protein JJL53_14190 PF00483 Nucleotidyl transferase JJL53_14200 PF07664 Ferrous iron transport protein B C terminus JJL53_14200 PF02421 Ferrous iron transport protein B JJL53_14200 PF07670 Nucleoside recognition JJL53_14210 PF01253 Translation initiation factor SUI1 JJL53_14215 PF01169 Uncharacterized protein family UPF0016 JJL53_14275 PF05598 Transposase domain (DUF772) JJL53_14275 PF01609 Transposase DDE domain JJL53_14285 PF01406 tRNA synthetases class I (C) catalytic domain JJL53_14285 PF09190 DALR domain JJL53_14290 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JJL53_14300 PF00149 Calcineurin-like phosphoesterase JJL53_14310 PF00043 Glutathione S-transferase, C-terminal domain JJL53_14310 PF13417 Glutathione S-transferase, N-terminal domain JJL53_14320 PF12323 Helix-turn-helix domain JJL53_14330 PF13784 Fic/DOC family N-terminal JJL53_14330 PF02661 Fic/DOC family JJL53_14355 PF05717 IS66 Orf2 like protein JJL53_14360 PF03050 Transposase IS66 family JJL53_14360 PF13005 zinc-finger binding domain of transposase IS66 JJL53_14360 PF13007 Transposase C of IS166 homeodomain JJL53_14360 PF13817 IS66 C-terminal element JJL53_14380 PF12323 Helix-turn-helix domain JJL53_14405 PF01066 CDP-alcohol phosphatidyltransferase JJL53_14410 PF01541 GIY-YIG catalytic domain JJL53_14410 PF02151 UvrB/uvrC motif JJL53_14410 PF08459 UvrC Helix-hairpin-helix N-terminal JJL53_14415 PF00196 Bacterial regulatory proteins, luxR family JJL53_14415 PF00072 Response regulator receiver domain JJL53_14420 PF02348 Cytidylyltransferase JJL53_14425 PF03966 Trm112p-like protein JJL53_14430 PF02606 Tetraacyldisaccharide-1-P 4'-kinase JJL53_14435 PF00005 ABC transporter JJL53_14435 PF00664 ABC transporter transmembrane region JJL53_14455 PF05872 Bacterial protein of unknown function (DUF853) JJL53_14460 PF00155 Aminotransferase class I and II JJL53_14470 PF13609 Gram-negative porin JJL53_14475 PF13307 Helicase C-terminal domain JJL53_14475 PF06733 DEAD_2 JJL53_14485 PF00850 Histone deacetylase domain JJL53_14490 PF07690 Major Facilitator Superfamily JJL53_14495 PF01926 50S ribosome-binding GTPase JJL53_14505 PF00245 Alkaline phosphatase JJL53_14520 PF14760 Rnk N-terminus JJL53_14520 PF01272 Transcription elongation factor, GreA/GreB, C-term JJL53_14525 PF00072 Response regulator receiver domain JJL53_14525 PF00196 Bacterial regulatory proteins, luxR family JJL53_14530 PF05231 MASE1 JJL53_14530 PF07730 Histidine kinase JJL53_14530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_14535 PF07690 Major Facilitator Superfamily JJL53_14545 PF01385 Probable transposase JJL53_14545 PF12323 Helix-turn-helix domain JJL53_14545 PF07282 Putative transposase DNA-binding domain JJL53_14560 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_14565 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_14570 PF00005 ABC transporter JJL53_14575 PF04116 Fatty acid hydroxylase superfamily JJL53_14580 PF01610 Transposase JJL53_14580 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_14580 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_14585 PF13006 Insertion element 4 transposase N-terminal JJL53_14585 PF01609 Transposase DDE domain JJL53_14590 PF13520 Amino acid permease JJL53_14605 PF03471 Transporter associated domain JJL53_14605 PF00571 CBS domain JJL53_14605 PF01595 Cyclin M transmembrane N-terminal domain JJL53_14610 PF01895 PhoU domain JJL53_14615 PF00005 ABC transporter JJL53_14620 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_14625 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_14630 PF14437 MafB19-like deaminase JJL53_14645 PF01274 Malate synthase JJL53_14650 PF00463 Isocitrate lyase family JJL53_14655 PF00308 Bacterial dnaA protein JJL53_14670 PF00586 AIR synthase related protein, N-terminal domain JJL53_14670 PF02769 AIR synthase related protein, C-terminal domain JJL53_14675 PF00551 Formyl transferase JJL53_14680 PF01784 NIF3 (NGG1p interacting factor 3) JJL53_14685 PF02954 Bacterial regulatory protein, Fis family JJL53_14685 PF00158 Sigma-54 interaction domain JJL53_14685 PF00072 Response regulator receiver domain JJL53_14690 PF13006 Insertion element 4 transposase N-terminal JJL53_14690 PF01609 Transposase DDE domain JJL53_14700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_14700 PF00512 His Kinase A (phospho-acceptor) domain JJL53_14700 PF13188 PAS domain JJL53_14705 PF00158 Sigma-54 interaction domain JJL53_14705 PF02954 Bacterial regulatory protein, Fis family JJL53_14705 PF06490 Flagellar regulatory protein FleQ JJL53_14715 PF01842 ACT domain JJL53_14720 PF17941 Polyphosphate kinase C-terminal domain 1 JJL53_14720 PF02503 Polyphosphate kinase middle domain JJL53_14720 PF13090 Polyphosphate kinase C-terminal domain 2 JJL53_14720 PF13089 Polyphosphate kinase N-terminal domain JJL53_14725 PF02541 Ppx/GppA phosphatase family JJL53_14735 PF12323 Helix-turn-helix domain JJL53_14735 PF01385 Probable transposase JJL53_14735 PF07282 Putative transposase DNA-binding domain JJL53_14750 PF12323 Helix-turn-helix domain JJL53_14765 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJL53_14765 PF07196 Flagellin hook IN motif JJL53_14770 PF10135 Rod binding protein JJL53_14770 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JJL53_14775 PF02119 Flagellar P-ring protein JJL53_14785 PF00460 Flagella basal body rod protein JJL53_14785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJL53_14790 PF00460 Flagella basal body rod protein JJL53_14790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJL53_14795 PF00460 Flagella basal body rod protein JJL53_14795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJL53_14795 PF07559 Flagellar basal body protein FlaE JJL53_14805 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JJL53_14805 PF00460 Flagella basal body rod protein JJL53_14810 PF00460 Flagella basal body rod protein JJL53_14815 PF03705 CheR methyltransferase, all-alpha domain JJL53_14815 PF01739 CheR methyltransferase, SAM binding domain JJL53_14820 PF01584 CheW-like domain JJL53_14820 PF00072 Response regulator receiver domain JJL53_14825 PF13144 Chaperone for flagella basal body P-ring formation JJL53_14840 PF12850 Calcineurin-like phosphoesterase superfamily domain JJL53_14845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_14855 PF00849 RNA pseudouridylate synthase JJL53_14855 PF01479 S4 domain JJL53_14860 PF11871 Domain of unknown function (DUF3391) JJL53_14860 PF01966 HD domain JJL53_14870 PF00892 EamA-like transporter family JJL53_14875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_14900 PF00313 'Cold-shock' DNA-binding domain JJL53_14905 PF02817 e3 binding domain JJL53_14905 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJL53_14905 PF00364 Biotin-requiring enzyme JJL53_14910 PF02779 Transketolase, pyrimidine binding domain JJL53_14910 PF02780 Transketolase, C-terminal domain JJL53_14930 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family JJL53_14940 PF05472 DNA replication terminus site-binding protein (Ter protein) JJL53_14945 PF04434 SWIM zinc finger JJL53_14945 PF00271 Helicase conserved C-terminal domain JJL53_14945 PF00176 SNF2 family N-terminal domain JJL53_14950 PF04337 Protein of unknown function, DUF480 JJL53_14965 PF02706 Chain length determinant protein JJL53_14970 PF00953 Glycosyl transferase family 4 JJL53_14975 PF00535 Glycosyl transferase family 2 JJL53_14980 PF00535 Glycosyl transferase family 2 JJL53_14995 PF00535 Glycosyl transferase family 2 JJL53_15015 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JJL53_15020 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_15025 PF05523 WxcM-like, C-terminal JJL53_15030 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JJL53_15035 PF00483 Nucleotidyl transferase JJL53_15040 PF04321 RmlD substrate binding domain JJL53_15045 PF16363 GDP-mannose 4,6 dehydratase JJL53_15055 PF01609 Transposase DDE domain JJL53_15055 PF13808 DDE_Tnp_1-associated JJL53_15060 PF01609 Transposase DDE domain JJL53_15085 PF02371 Transposase IS116/IS110/IS902 family JJL53_15085 PF01548 Transposase JJL53_15095 PF01548 Transposase JJL53_15095 PF02371 Transposase IS116/IS110/IS902 family JJL53_15100 PF00486 Transcriptional regulatory protein, C terminal JJL53_15100 PF00072 Response regulator receiver domain JJL53_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_15110 PF02685 Glucokinase JJL53_15115 PF01380 SIS domain JJL53_15115 PF01418 Helix-turn-helix domain, rpiR family JJL53_15120 PF00224 Pyruvate kinase, barrel domain JJL53_15120 PF02887 Pyruvate kinase, alpha/beta domain JJL53_15130 PF00873 AcrB/AcrD/AcrF family JJL53_15135 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JJL53_15135 PF02770 Acyl-CoA dehydrogenase, middle domain JJL53_15135 PF09317 Domain of unknown function (DUF1974) JJL53_15135 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JJL53_15140 PF00440 Bacterial regulatory proteins, tetR family JJL53_15170 PF13426 PAS domain JJL53_15170 PF08447 PAS fold JJL53_15170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_15175 PF01609 Transposase DDE domain JJL53_15200 PF13737 Transposase DDE domain JJL53_15220 PF13817 IS66 C-terminal element JJL53_15220 PF13005 zinc-finger binding domain of transposase IS66 JJL53_15220 PF13007 Transposase C of IS166 homeodomain JJL53_15220 PF03050 Transposase IS66 family JJL53_15230 PF00872 Transposase, Mutator family JJL53_15235 PF00239 Resolvase, N terminal domain JJL53_15235 PF02796 Helix-turn-helix domain of resolvase JJL53_15240 PF05973 Phage derived protein Gp49-like (DUF891) JJL53_15255 PF00872 Transposase, Mutator family JJL53_15270 PF01695 IstB-like ATP binding protein JJL53_15275 PF00665 Integrase core domain JJL53_15295 PF00872 Transposase, Mutator family JJL53_15310 PF02321 Outer membrane efflux protein JJL53_15315 PF00873 AcrB/AcrD/AcrF family JJL53_15320 PF00529 HlyD membrane-fusion protein of T1SS JJL53_15320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_15325 PF08361 MAATS-type transcriptional repressor, C-terminal region JJL53_15325 PF00440 Bacterial regulatory proteins, tetR family JJL53_15345 PF00849 RNA pseudouridylate synthase JJL53_15345 PF01479 S4 domain JJL53_15350 PF04079 Segregation and condensation complex subunit ScpB JJL53_15355 PF02616 Segregation and condensation protein ScpA JJL53_15360 PF01300 Telomere recombination JJL53_15365 PF02811 PHP domain JJL53_15370 PF04715 Anthranilate synthase component I, N terminal region JJL53_15370 PF00425 chorismate binding enzyme JJL53_15375 PF02885 Glycosyl transferase family, helical bundle domain JJL53_15375 PF00591 Glycosyl transferase family, a/b domain JJL53_15375 PF00117 Glutamine amidotransferase class-I JJL53_15380 PF02885 Glycosyl transferase family, helical bundle domain JJL53_15380 PF00591 Glycosyl transferase family, a/b domain JJL53_15385 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JJL53_15385 PF00218 Indole-3-glycerol phosphate synthase JJL53_15390 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_15395 PF00290 Tryptophan synthase alpha chain JJL53_15410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_15410 PF03466 LysR substrate binding domain JJL53_15420 PF13006 Insertion element 4 transposase N-terminal JJL53_15420 PF01609 Transposase DDE domain JJL53_15425 PF07237 Protein of unknown function (DUF1428) JJL53_15430 PF07690 Major Facilitator Superfamily JJL53_15435 PF01040 UbiA prenyltransferase family JJL53_15440 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JJL53_15445 PF00510 Cytochrome c oxidase subunit III JJL53_15465 PF06481 COX Aromatic Rich Motif JJL53_15465 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJL53_15470 PF13808 DDE_Tnp_1-associated JJL53_15470 PF01609 Transposase DDE domain JJL53_15480 PF02627 Carboxymuconolactone decarboxylase family JJL53_15485 PF03466 LysR substrate binding domain JJL53_15485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_15495 PF01156 Inosine-uridine preferring nucleoside hydrolase JJL53_15510 PF00127 Copper binding proteins, plastocyanin/azurin family JJL53_15515 PF02424 ApbE family JJL53_15520 PF00011 Hsp20/alpha crystallin family JJL53_15530 PF12323 Helix-turn-helix domain JJL53_15545 PF03372 Endonuclease/Exonuclease/phosphatase family JJL53_15555 PF00529 HlyD membrane-fusion protein of T1SS JJL53_15555 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_15560 PF00873 AcrB/AcrD/AcrF family JJL53_15575 PF12323 Helix-turn-helix domain JJL53_15575 PF01385 Probable transposase JJL53_15575 PF07282 Putative transposase DNA-binding domain JJL53_15590 PF10437 Bacterial lipoate protein ligase C-terminus JJL53_15590 PF03099 Biotin/lipoate A/B protein ligase family JJL53_15595 PF03707 Bacterial signalling protein N terminal repeat JJL53_15595 PF00990 Diguanylate cyclase, GGDEF domain JJL53_15595 PF00563 EAL domain JJL53_15600 PF00873 AcrB/AcrD/AcrF family JJL53_15615 PF04143 Sulphur transport JJL53_15635 PF02308 MgtC family JJL53_15640 PF13407 Periplasmic binding protein domain JJL53_15640 PF00356 Bacterial regulatory proteins, lacI family JJL53_15645 PF08244 Glycosyl hydrolases family 32 C terminal JJL53_15645 PF00251 Glycosyl hydrolases family 32 N-terminal domain JJL53_15650 PF00367 phosphotransferase system, EIIB JJL53_15650 PF02378 Phosphotransferase system, EIIC JJL53_15655 PF00294 pfkB family carbohydrate kinase JJL53_15660 PF11471 Maltoporin periplasmic N-terminal extension JJL53_15660 PF02264 LamB porin JJL53_15665 PF00684 DnaJ central domain JJL53_15665 PF00226 DnaJ domain JJL53_15665 PF01556 DnaJ C terminal domain JJL53_15670 PF00012 Hsp70 protein JJL53_15675 PF01025 GrpE JJL53_15680 PF01513 ATP-NAD kinase JJL53_15685 PF00990 Diguanylate cyclase, GGDEF domain JJL53_15685 PF17158 Membrane-associated sensor, integral membrane domain JJL53_15690 PF02463 RecF/RecN/SMC N terminal domain JJL53_15695 PF02833 DHHA2 domain JJL53_15695 PF01368 DHH family JJL53_15705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_15710 PF12704 MacB-like periplasmic core domain JJL53_15710 PF00005 ABC transporter JJL53_15710 PF02687 FtsX-like permease family JJL53_15715 PF02321 Outer membrane efflux protein JJL53_15720 PF04954 Siderophore-interacting protein JJL53_15720 PF08021 Siderophore-interacting FAD-binding domain JJL53_15725 PF00793 DAHP synthetase I family JJL53_15730 PF00816 H-NS histone family JJL53_15735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_15735 PF03466 LysR substrate binding domain JJL53_15740 PF02447 GntP family permease JJL53_15745 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_15755 PF00180 Isocitrate/isopropylmalate dehydrogenase JJL53_15760 PF12833 Helix-turn-helix domain JJL53_15765 PF01238 Phosphomannose isomerase type I JJL53_15770 PF10688 Bacterial inner membrane protein JJL53_15785 PF02368 Bacterial Ig-like domain (group 2) JJL53_15785 PF11999 Protein of unknown function (DUF3494) JJL53_15805 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_15805 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJL53_15805 PF02378 Phosphotransferase system, EIIC JJL53_15810 PF07690 Major Facilitator Superfamily JJL53_15815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_15825 PF00849 RNA pseudouridylate synthase JJL53_15830 PF00293 NUDIX domain JJL53_15845 PF04356 Protein of unknown function (DUF489) JJL53_15850 PF00206 Lyase JJL53_15850 PF08328 Adenylosuccinate lyase C-terminal JJL53_15855 PF08007 Cupin superfamily protein JJL53_15860 PF00224 Pyruvate kinase, barrel domain JJL53_15860 PF02887 Pyruvate kinase, alpha/beta domain JJL53_15865 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJL53_15865 PF12795 Mechanosensitive ion channel porin domain JJL53_15865 PF00924 Mechanosensitive ion channel JJL53_15870 PF01810 LysE type translocator JJL53_15880 PF00933 Glycosyl hydrolase family 3 N terminal domain JJL53_15880 PF01915 Glycosyl hydrolase family 3 C-terminal domain JJL53_15885 PF02653 Branched-chain amino acid transport system / permease component JJL53_15890 PF00005 ABC transporter JJL53_15900 PF13808 DDE_Tnp_1-associated JJL53_15900 PF01609 Transposase DDE domain JJL53_15915 PF10282 Lactonase, 7-bladed beta-propeller JJL53_15930 PF00860 Permease family JJL53_15935 PF00390 Malic enzyme, N-terminal domain JJL53_15935 PF03949 Malic enzyme, NAD binding domain JJL53_15940 PF12804 MobA-like NTP transferase domain JJL53_15945 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JJL53_15960 PF08447 PAS fold JJL53_15960 PF13426 PAS domain JJL53_15960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_15980 PF05114 Protein of unknown function (DUF692) JJL53_15995 PF01797 Transposase IS200 like JJL53_16015 PF01695 IstB-like ATP binding protein JJL53_16020 PF00665 Integrase core domain JJL53_16035 PF13474 SnoaL-like domain JJL53_16040 PF14821 Threonine synthase N terminus JJL53_16040 PF00291 Pyridoxal-phosphate dependent enzyme JJL53_16045 PF08544 GHMP kinases C terminal JJL53_16045 PF00288 GHMP kinases N terminal domain JJL53_16050 PF00742 Homoserine dehydrogenase JJL53_16050 PF01842 ACT domain JJL53_16050 PF03447 Homoserine dehydrogenase, NAD binding domain JJL53_16050 PF00696 Amino acid kinase family JJL53_16050 PF13840 ACT domain JJL53_16055 PF00588 SpoU rRNA Methylase family JJL53_16060 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) JJL53_16070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16070 PF03466 LysR substrate binding domain JJL53_16075 PF01243 Pyridoxamine 5'-phosphate oxidase JJL53_16075 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region JJL53_16080 PF13006 Insertion element 4 transposase N-terminal JJL53_16080 PF01609 Transposase DDE domain JJL53_16095 PF01029 NusB family JJL53_16095 PF01189 16S rRNA methyltransferase RsmB/F JJL53_16100 PF00462 Glutaredoxin JJL53_16105 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JJL53_16105 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JJL53_16110 PF04333 MlaA lipoprotein JJL53_16120 PF03918 Cytochrome C biogenesis protein JJL53_16125 PF08534 Redoxin JJL53_16130 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal JJL53_16130 PF01578 Cytochrome C assembly protein JJL53_16135 PF03100 CcmE JJL53_16140 PF04995 Heme exporter protein D (CcmD) JJL53_16145 PF01578 Cytochrome C assembly protein JJL53_16150 PF03379 CcmB protein JJL53_16155 PF00005 ABC transporter JJL53_16165 PF01584 CheW-like domain JJL53_16175 PF13614 AAA domain JJL53_16180 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJL53_16180 PF00691 OmpA family JJL53_16185 PF01618 MotA/TolQ/ExbB proton channel family JJL53_16190 PF00072 Response regulator receiver domain JJL53_16190 PF01339 CheB methylesterase JJL53_16195 PF01627 Hpt domain JJL53_16195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_16195 PF01584 CheW-like domain JJL53_16195 PF00072 Response regulator receiver domain JJL53_16195 PF02895 Signal transducing histidine kinase, homodimeric domain JJL53_16240 PF00440 Bacterial regulatory proteins, tetR family JJL53_16245 PF13533 Biotin-lipoyl like JJL53_16255 PF00005 ABC transporter JJL53_16270 PF02796 Helix-turn-helix domain of resolvase JJL53_16270 PF00239 Resolvase, N terminal domain JJL53_16285 PF01609 Transposase DDE domain JJL53_16285 PF05598 Transposase domain (DUF772) JJL53_16335 PF18693 TRAM domain JJL53_16335 PF00919 Uncharacterized protein family UPF0004 JJL53_16335 PF04055 Radical SAM superfamily JJL53_16345 PF07634 RtxA repeat JJL53_16345 PF16671 Actin cross-linking domain JJL53_16345 PF12146 Serine aminopeptidase, S33 JJL53_16345 PF11713 Peptidase C80 family JJL53_16345 PF11647 Membrane Localization Domain JJL53_16355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_16360 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_16365 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_16365 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_16370 PF00005 ABC transporter JJL53_16370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_16375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_16375 PF00005 ABC transporter JJL53_16385 PF01869 BadF/BadG/BcrA/BcrD ATPase family JJL53_16390 PF00728 Glycosyl hydrolase family 20, catalytic domain JJL53_16390 PF02838 Glycosyl hydrolase family 20, domain 2 JJL53_16395 PF08447 PAS fold JJL53_16395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_16410 PF01131 DNA topoisomerase JJL53_16410 PF08272 Topoisomerase I zinc-ribbon-like JJL53_16410 PF01751 Toprim domain JJL53_16410 PF01396 Topoisomerase DNA binding C4 zinc finger JJL53_16415 PF04996 Succinylarginine dihydrolase JJL53_16420 PF01343 Peptidase family S49 JJL53_16420 PF08496 Peptidase family S49 N-terminal JJL53_16425 PF00106 short chain dehydrogenase JJL53_16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16430 PF03466 LysR substrate binding domain JJL53_16435 PF07690 Major Facilitator Superfamily JJL53_16440 PF00155 Aminotransferase class I and II JJL53_16450 PF03466 LysR substrate binding domain JJL53_16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16455 PF00709 Adenylosuccinate synthetase JJL53_16465 PF01204 Trehalase JJL53_16470 PF13006 Insertion element 4 transposase N-terminal JJL53_16470 PF01609 Transposase DDE domain JJL53_16475 PF00579 tRNA synthetases class I (W and Y) JJL53_16480 PF01551 Peptidase family M23 JJL53_16480 PF01476 LysM domain JJL53_16480 PF08525 Opacity-associated protein A N-terminal motif JJL53_16485 PF03702 Anhydro-N-acetylmuramic acid kinase JJL53_16510 PF02779 Transketolase, pyrimidine binding domain JJL53_16510 PF02780 Transketolase, C-terminal domain JJL53_16510 PF00456 Transketolase, thiamine diphosphate binding domain JJL53_16515 PF02773 S-adenosylmethionine synthetase, C-terminal domain JJL53_16515 PF02772 S-adenosylmethionine synthetase, central domain JJL53_16515 PF00438 S-adenosylmethionine synthetase, N-terminal domain JJL53_16520 PF17283 SprT-like zinc ribbon domain JJL53_16520 PF10263 SprT-like family JJL53_16525 PF04231 Endonuclease I JJL53_16530 PF04452 RNA methyltransferase JJL53_16535 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain JJL53_16535 PF02951 Prokaryotic glutathione synthetase, N-terminal domain JJL53_16540 PF02622 Uncharacterized ACR, COG1678 JJL53_16545 PF03652 Holliday junction resolvase JJL53_16550 PF03466 LysR substrate binding domain JJL53_16550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16555 PF07690 Major Facilitator Superfamily JJL53_16560 PF00144 Beta-lactamase JJL53_16565 PF01235 Sodium:alanine symporter family JJL53_16570 PF00923 Transaldolase/Fructose-6-phosphate aldolase JJL53_16580 PF01609 Transposase DDE domain JJL53_16580 PF13006 Insertion element 4 transposase N-terminal JJL53_16590 PF03167 Uracil DNA glycosylase superfamily JJL53_16595 PF01228 Glycine radical JJL53_16610 PF01609 Transposase DDE domain JJL53_16610 PF13808 DDE_Tnp_1-associated JJL53_16620 PF00793 DAHP synthetase I family JJL53_16625 PF13369 Transglutaminase-like superfamily JJL53_16635 PF13847 Methyltransferase domain JJL53_16635 PF17827 PrmC N-terminal domain JJL53_16640 PF00472 RF-1 domain JJL53_16640 PF03462 PCRF domain JJL53_16645 PF01488 Shikimate / quinate 5-dehydrogenase JJL53_16645 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JJL53_16645 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JJL53_16650 PF03550 Outer membrane lipoprotein LolB JJL53_16655 PF00288 GHMP kinases N terminal domain JJL53_16655 PF08544 GHMP kinases C terminal JJL53_16665 PF14572 Phosphoribosyl synthetase-associated domain JJL53_16665 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JJL53_16685 PF01195 Peptidyl-tRNA hydrolase JJL53_16690 PF01926 50S ribosome-binding GTPase JJL53_16690 PF06071 Protein of unknown function (DUF933) JJL53_16735 PF03600 Citrate transporter JJL53_16735 PF02080 TrkA-C domain JJL53_16740 PF04266 ASCH domain JJL53_16745 PF07859 alpha/beta hydrolase fold JJL53_16755 PF07690 Major Facilitator Superfamily JJL53_16760 PF13419 Haloacid dehalogenase-like hydrolase JJL53_16770 PF00171 Aldehyde dehydrogenase family JJL53_16775 PF04958 Arginine N-succinyltransferase beta subunit JJL53_16780 PF00202 Aminotransferase class-III JJL53_16785 PF00117 Glutamine amidotransferase class-I JJL53_16795 PF00579 tRNA synthetases class I (W and Y) JJL53_16800 PF13419 Haloacid dehalogenase-like hydrolase JJL53_16805 PF00834 Ribulose-phosphate 3 epimerase family JJL53_16810 PF02086 D12 class N6 adenine-specific DNA methyltransferase JJL53_16820 PF01761 3-dehydroquinate synthase JJL53_16825 PF01202 Shikimate kinase JJL53_16850 PF04350 Pilus assembly protein, PilO JJL53_16860 PF11104 Type IV pilus assembly protein PilM; JJL53_16865 PF00905 Penicillin binding protein transpeptidase domain JJL53_16865 PF00912 Transglycosylase JJL53_16865 PF17092 Penicillin-binding protein OB-like domain JJL53_16870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16870 PF03466 LysR substrate binding domain JJL53_16885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_16885 PF03466 LysR substrate binding domain JJL53_16900 PF02753 Pili assembly chaperone PapD, C-terminal domain JJL53_16900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JJL53_16905 PF13953 PapC C-terminal domain JJL53_16905 PF13954 PapC N-terminal domain JJL53_16905 PF00577 Outer membrane usher protein JJL53_16910 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain JJL53_16910 PF02753 Pili assembly chaperone PapD, C-terminal domain JJL53_16920 PF01551 Peptidase family M23 JJL53_16920 PF08525 Opacity-associated protein A N-terminal motif JJL53_16920 PF01476 LysM domain JJL53_16925 PF13006 Insertion element 4 transposase N-terminal JJL53_16925 PF01609 Transposase DDE domain JJL53_16935 PF00924 Mechanosensitive ion channel JJL53_16935 PF12795 Mechanosensitive ion channel porin domain JJL53_16935 PF12794 Mechanosensitive ion channel inner membrane domain 1 JJL53_16940 PF03009 Glycerophosphoryl diester phosphodiesterase family JJL53_16945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_16945 PF00672 HAMP domain JJL53_16945 PF02743 Cache domain JJL53_16950 PF02910 Fumarate reductase flavoprotein C-term JJL53_16950 PF00890 FAD binding domain JJL53_16955 PF13183 4Fe-4S dicluster domain JJL53_16955 PF13085 2Fe-2S iron-sulfur cluster binding domain JJL53_16960 PF02300 Fumarate reductase subunit C JJL53_16965 PF02313 Fumarate reductase subunit D JJL53_16970 PF06224 Winged helix DNA-binding domain JJL53_16975 PF13649 Methyltransferase domain JJL53_16985 PF00501 AMP-binding enzyme JJL53_16995 PF00106 short chain dehydrogenase JJL53_17005 PF00486 Transcriptional regulatory protein, C terminal JJL53_17005 PF00072 Response regulator receiver domain JJL53_17010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_17010 PF08521 Two-component sensor kinase N-terminal JJL53_17010 PF00512 His Kinase A (phospho-acceptor) domain JJL53_17020 PF01610 Transposase JJL53_17020 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_17020 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_17025 PF00478 IMP dehydrogenase / GMP reductase domain JJL53_17035 PF01132 Elongation factor P (EF-P) OB domain JJL53_17035 PF08207 Elongation factor P (EF-P) KOW-like domain JJL53_17035 PF09285 Elongation factor P, C-terminal JJL53_17040 PF09997 Predicted membrane protein (DUF2238) JJL53_17050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JJL53_17050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JJL53_17060 PF00990 Diguanylate cyclase, GGDEF domain JJL53_17060 PF07694 5TMR of 5TMR-LYT JJL53_17075 PF01609 Transposase DDE domain JJL53_17075 PF13006 Insertion element 4 transposase N-terminal JJL53_17080 PF17151 Periplasmic sensor domain JJL53_17080 PF00990 Diguanylate cyclase, GGDEF domain JJL53_17085 PF13419 Haloacid dehalogenase-like hydrolase JJL53_17095 PF03466 LysR substrate binding domain JJL53_17095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_17100 PF00313 'Cold-shock' DNA-binding domain JJL53_17105 PF01494 FAD binding domain JJL53_17110 PF04055 Radical SAM superfamily JJL53_17110 PF01938 TRAM domain JJL53_17110 PF00919 Uncharacterized protein family UPF0004 JJL53_17115 PF02562 PhoH-like protein JJL53_17120 PF02130 Uncharacterized protein family UPF0054 JJL53_17125 PF00571 CBS domain JJL53_17125 PF03471 Transporter associated domain JJL53_17130 PF00795 Carbon-nitrogen hydrolase JJL53_17135 PF07295 Zinc-ribbon containing domain JJL53_17140 PF13603 Leucyl-tRNA synthetase, Domain 2 JJL53_17140 PF00133 tRNA synthetases class I (I, L, M and V) JJL53_17140 PF08264 Anticodon-binding domain of tRNA JJL53_17155 PF01467 Cytidylyltransferase-like JJL53_17165 PF02590 Predicted SPOUT methyltransferase JJL53_17170 PF00905 Penicillin binding protein transpeptidase domain JJL53_17170 PF03717 Penicillin-binding Protein dimerisation domain JJL53_17175 PF01098 Cell cycle protein JJL53_17180 PF13406 Transglycosylase SLT domain JJL53_17185 PF03330 Lytic transglycolase JJL53_17185 PF05036 Sporulation related domain JJL53_17190 PF07943 Penicillin-binding protein 5, C-terminal domain JJL53_17190 PF00768 D-alanyl-D-alanine carboxypeptidase JJL53_17195 PF04359 Protein of unknown function (DUF493) JJL53_17200 PF03099 Biotin/lipoate A/B protein ligase family JJL53_17205 PF04055 Radical SAM superfamily JJL53_17205 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JJL53_17215 PF02508 Rnf-Nqr subunit, membrane protein JJL53_17225 PF17768 RecJ OB domain JJL53_17225 PF02272 DHHA1 domain JJL53_17225 PF01368 DHH family JJL53_17230 PF00158 Sigma-54 interaction domain JJL53_17230 PF00072 Response regulator receiver domain JJL53_17230 PF02954 Bacterial regulatory protein, Fis family JJL53_17240 PF01741 Large-conductance mechanosensitive channel, MscL JJL53_17250 PF02899 Phage integrase, N-terminal SAM-like domain JJL53_17250 PF00589 Phage integrase family JJL53_17255 PF00258 Flavodoxin JJL53_17260 PF01523 Putative modulator of DNA gyrase JJL53_17265 PF01523 Putative modulator of DNA gyrase JJL53_17275 PF03734 L,D-transpeptidase catalytic domain JJL53_17275 PF17969 L,D-transpeptidase C-terminal domain JJL53_17280 PF16325 Peptidase family U32 C-terminal domain JJL53_17280 PF01136 Peptidase family U32 JJL53_17285 PF12838 4Fe-4S dicluster domain JJL53_17300 PF02635 DsrE/DsrF-like family JJL53_17310 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JJL53_17310 PF00013 KH domain JJL53_17310 PF03725 3' exoribonuclease family, domain 2 JJL53_17310 PF01138 3' exoribonuclease family, domain 1 JJL53_17310 PF00575 S1 RNA binding domain JJL53_17315 PF00312 Ribosomal protein S15 JJL53_17320 PF01509 TruB family pseudouridylate synthase (N terminal domain) JJL53_17320 PF09157 Pseudouridine synthase II TruB, C-terminal JJL53_17320 PF16198 tRNA pseudouridylate synthase B C-terminal domain JJL53_17325 PF02033 Ribosome-binding factor A JJL53_17330 PF00009 Elongation factor Tu GTP binding domain JJL53_17330 PF11987 Translation-initiation factor 2 JJL53_17330 PF04760 Translation initiation factor IF-2, N-terminal region JJL53_17330 PF08364 Bacterial translation initiation factor IF-2 associated region JJL53_17335 PF13184 NusA-like KH domain JJL53_17335 PF00575 S1 RNA binding domain JJL53_17335 PF08529 NusA N-terminal domain JJL53_17340 PF02576 RimP N-terminal domain JJL53_17340 PF17384 RimP C-terminal SH3 domain JJL53_17355 PF03840 Preprotein translocase SecG subunit JJL53_17360 PF00121 Triosephosphate isomerase JJL53_17365 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JJL53_17365 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JJL53_17365 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JJL53_17365 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JJL53_17370 PF00809 Pterin binding enzyme JJL53_17375 PF06480 FtsH Extracellular JJL53_17375 PF17862 AAA+ lid domain JJL53_17375 PF00004 ATPase family associated with various cellular activities (AAA) JJL53_17375 PF01434 Peptidase family M41 JJL53_17380 PF01728 FtsJ-like methyltransferase JJL53_17385 PF01985 CRS1 / YhbY (CRM) domain JJL53_17395 PF01272 Transcription elongation factor, GreA/GreB, C-term JJL53_17395 PF03449 Transcription elongation factor, N-terminal JJL53_17400 PF13677 Membrane MotB of proton-channel complex MotA/MotB JJL53_17400 PF00691 OmpA family JJL53_17405 PF01618 MotA/TolQ/ExbB proton channel family JJL53_17410 PF02609 Exonuclease VII small subunit JJL53_17415 PF00348 Polyprenyl synthetase JJL53_17420 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JJL53_17420 PF02780 Transketolase, C-terminal domain JJL53_17420 PF02779 Transketolase, pyrimidine binding domain JJL53_17425 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_17425 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_17430 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_17435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_17440 PF00005 ABC transporter JJL53_17440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_17445 PF04608 Phosphatidylglycerophosphatase A JJL53_17450 PF02769 AIR synthase related protein, C-terminal domain JJL53_17450 PF00586 AIR synthase related protein, N-terminal domain JJL53_17455 PF01029 NusB family JJL53_17460 PF00885 6,7-dimethyl-8-ribityllumazine synthase JJL53_17465 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JJL53_17465 PF00925 GTP cyclohydrolase II JJL53_17470 PF00677 Lumazine binding domain JJL53_17475 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JJL53_17475 PF01872 RibD C-terminal domain JJL53_17480 PF03477 ATP cone domain JJL53_17495 PF00464 Serine hydroxymethyltransferase JJL53_17505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_17505 PF00672 HAMP domain JJL53_17505 PF00512 His Kinase A (phospho-acceptor) domain JJL53_17505 PF00072 Response regulator receiver domain JJL53_17505 PF01627 Hpt domain JJL53_17510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJL53_17520 PF00486 Transcriptional regulatory protein, C terminal JJL53_17520 PF00072 Response regulator receiver domain JJL53_17525 PF03264 NapC/NirT cytochrome c family, N-terminal region JJL53_17530 PF00384 Molybdopterin oxidoreductase JJL53_17530 PF18364 Molybdopterin oxidoreductase N-terminal domain JJL53_17530 PF01568 Molydopterin dinucleotide binding domain JJL53_17535 PF02613 Nitrate reductase delta subunit JJL53_17550 PF16177 Acetyl-coenzyme A synthetase N-terminus JJL53_17550 PF13193 AMP-binding enzyme C-terminal domain JJL53_17550 PF00501 AMP-binding enzyme JJL53_17555 PF01220 Dehydroquinase class II JJL53_17560 PF00364 Biotin-requiring enzyme JJL53_17565 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JJL53_17565 PF02785 Biotin carboxylase C-terminal domain JJL53_17565 PF00289 Biotin carboxylase, N-terminal domain JJL53_17570 PF06196 Protein of unknown function (DUF997) JJL53_17575 PF00474 Sodium:solute symporter family JJL53_17580 PF00367 phosphotransferase system, EIIB JJL53_17580 PF02378 Phosphotransferase system, EIIC JJL53_17580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JJL53_17585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_17585 PF03466 LysR substrate binding domain JJL53_17605 PF14602 Hexapeptide repeat of succinyl-transferase JJL53_17605 PF12464 Maltose acetyltransferase JJL53_17610 PF00881 Nitroreductase family JJL53_17615 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_17615 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JJL53_17620 PF01343 Peptidase family S49 JJL53_17635 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJL53_17635 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJL53_17640 PF07023 Protein of unknown function (DUF1315) JJL53_17645 PF17763 Glutaminase/Asparaginase C-terminal domain JJL53_17645 PF00710 Asparaginase, N-terminal JJL53_17650 PF03616 Sodium/glutamate symporter JJL53_17655 PF00563 EAL domain JJL53_17655 PF08448 PAS fold JJL53_17655 PF08447 PAS fold JJL53_17655 PF00990 Diguanylate cyclase, GGDEF domain JJL53_17660 PF02743 Cache domain JJL53_17660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_17660 PF00672 HAMP domain JJL53_17670 PF00152 tRNA synthetases class II (D, K and N) JJL53_17670 PF01336 OB-fold nucleic acid binding domain JJL53_17675 PF02567 Phenazine biosynthesis-like protein JJL53_17680 PF00175 Oxidoreductase NAD-binding domain JJL53_17680 PF00667 FAD binding domain JJL53_17680 PF00258 Flavodoxin JJL53_17685 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJL53_17685 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJL53_17690 PF01507 Phosphoadenosine phosphosulfate reductase family JJL53_17695 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JJL53_17700 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_17705 PF00005 ABC transporter JJL53_17705 PF00571 CBS domain JJL53_17710 PF00186 Dihydrofolate reductase JJL53_17715 PF12821 Threonine/Serine exporter, ThrE JJL53_17720 PF06738 Putative threonine/serine exporter JJL53_17735 PF01609 Transposase DDE domain JJL53_17750 PF01609 Transposase DDE domain JJL53_17755 PF00994 Probable molybdopterin binding domain JJL53_17765 PF00109 Beta-ketoacyl synthase, N-terminal domain JJL53_17765 PF02801 Beta-ketoacyl synthase, C-terminal domain JJL53_17780 PF02801 Beta-ketoacyl synthase, C-terminal domain JJL53_17780 PF00109 Beta-ketoacyl synthase, N-terminal domain JJL53_17805 PF00221 Aromatic amino acid lyase JJL53_17815 PF07977 FabA-like domain JJL53_17820 PF00501 AMP-binding enzyme JJL53_17820 PF13193 AMP-binding enzyme C-terminal domain JJL53_17830 PF00550 Phosphopantetheine attachment site JJL53_17835 PF00550 Phosphopantetheine attachment site JJL53_17850 PF01609 Transposase DDE domain JJL53_17890 PF13808 DDE_Tnp_1-associated JJL53_17890 PF01609 Transposase DDE domain JJL53_17895 PF00194 Eukaryotic-type carbonic anhydrase JJL53_17900 PF04227 Indigoidine synthase A like protein JJL53_17905 PF00294 pfkB family carbohydrate kinase JJL53_17910 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJL53_17910 PF04324 BFD-like [2Fe-2S] binding domain JJL53_17910 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJL53_17910 PF13806 Rieske-like [2Fe-2S] domain JJL53_17910 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_17910 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJL53_17915 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJL53_17915 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_17915 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJL53_17915 PF04324 BFD-like [2Fe-2S] binding domain JJL53_17915 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJL53_17915 PF13806 Rieske-like [2Fe-2S] domain JJL53_17920 PF00005 ABC transporter JJL53_17925 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_17930 PF00005 ABC transporter JJL53_17935 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_17935 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_17935 PF01610 Transposase JJL53_17945 PF14824 Sirohaem biosynthesis protein central JJL53_17945 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJL53_17945 PF10414 Sirohaem synthase dimerisation region JJL53_17950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJL53_17950 PF00384 Molybdopterin oxidoreductase JJL53_17950 PF04324 BFD-like [2Fe-2S] binding domain JJL53_17950 PF01568 Molydopterin dinucleotide binding domain JJL53_17965 PF00582 Universal stress protein family JJL53_17975 PF00171 Aldehyde dehydrogenase family JJL53_17980 PF00696 Amino acid kinase family JJL53_17980 PF01472 PUA domain JJL53_17985 PF07417 Sigma factor-binding transcriptional regulator Crl JJL53_17990 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) JJL53_17995 PF00156 Phosphoribosyl transferase domain JJL53_18000 PF07687 Peptidase dimerisation domain JJL53_18000 PF01546 Peptidase family M20/M25/M40 JJL53_18005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_18005 PF00005 ABC transporter JJL53_18010 PF00005 ABC transporter JJL53_18010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JJL53_18015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JJL53_18020 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_18020 PF12911 N-terminal TM domain of oligopeptide transport permease C JJL53_18025 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_18030 PF13808 DDE_Tnp_1-associated JJL53_18030 PF01609 Transposase DDE domain JJL53_18035 PF07715 TonB-dependent Receptor Plug Domain JJL53_18035 PF00593 TonB dependent receptor JJL53_18045 PF01618 MotA/TolQ/ExbB proton channel family JJL53_18050 PF01618 MotA/TolQ/ExbB proton channel family JJL53_18055 PF02472 Biopolymer transport protein ExbD/TolR JJL53_18070 PF06483 Chitinase C JJL53_18070 PF00704 Glycosyl hydrolases family 18 JJL53_18100 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJL53_18105 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJL53_18110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_18110 PF00672 HAMP domain JJL53_18120 PF00313 'Cold-shock' DNA-binding domain JJL53_18155 PF00929 Exonuclease JJL53_18160 PF03193 RsgA GTPase JJL53_18165 PF02666 Phosphatidylserine decarboxylase JJL53_18170 PF09905 DNA-binding protein VF530 JJL53_18185 PF02627 Carboxymuconolactone decarboxylase family JJL53_18190 PF12852 Cupin JJL53_18190 PF12833 Helix-turn-helix domain JJL53_18215 PF13006 Insertion element 4 transposase N-terminal JJL53_18215 PF01609 Transposase DDE domain JJL53_18220 PF06877 Regulator of ribonuclease activity B JJL53_18225 PF00801 PKD domain JJL53_18225 PF05547 Immune inhibitor A peptidase M6 JJL53_18230 PF16363 GDP-mannose 4,6 dehydratase JJL53_18235 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain JJL53_18235 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain JJL53_18240 PF10509 Galactokinase galactose-binding signature JJL53_18240 PF08544 GHMP kinases C terminal JJL53_18240 PF00288 GHMP kinases N terminal domain JJL53_18245 PF01263 Aldose 1-epimerase JJL53_18250 PF04193 PQ loop repeat JJL53_18255 PF00356 Bacterial regulatory proteins, lacI family JJL53_18265 PF05598 Transposase domain (DUF772) JJL53_18265 PF01609 Transposase DDE domain JJL53_18270 PF02001 Protein of unknown function DUF134 JJL53_18295 PF13808 DDE_Tnp_1-associated JJL53_18295 PF01609 Transposase DDE domain JJL53_18360 PF00589 Phage integrase family JJL53_18360 PF02899 Phage integrase, N-terminal SAM-like domain JJL53_18370 PF00589 Phage integrase family JJL53_18390 PF00561 alpha/beta hydrolase fold JJL53_18395 PF00664 ABC transporter transmembrane region JJL53_18395 PF00005 ABC transporter JJL53_18400 PF06004 Bacterial protein of unknown function (DUF903) JJL53_18405 PF13006 Insertion element 4 transposase N-terminal JJL53_18405 PF01609 Transposase DDE domain JJL53_18410 PF00581 Rhodanese-like domain JJL53_18430 PF01609 Transposase DDE domain JJL53_18440 PF04320 Protein with unknown function (DUF469) JJL53_18445 PF02390 Putative methyltransferase JJL53_18450 PF01483 Proprotein convertase P-domain JJL53_18450 PF04389 Peptidase family M28 JJL53_18455 PF00155 Aminotransferase class I and II JJL53_18460 PF00563 EAL domain JJL53_18460 PF12792 CSS motif domain associated with EAL JJL53_18465 PF01370 NAD dependent epimerase/dehydratase family JJL53_18465 PF08338 Domain of unknown function (DUF1731) JJL53_18475 PF00005 ABC transporter JJL53_18480 PF13472 GDSL-like Lipase/Acylhydrolase family JJL53_18495 PF00267 Gram-negative porin JJL53_18500 PF05598 Transposase domain (DUF772) JJL53_18500 PF01609 Transposase DDE domain JJL53_18505 PF13592 Winged helix-turn helix JJL53_18505 PF13358 DDE superfamily endonuclease JJL53_18510 PF00571 CBS domain JJL53_18515 PF00005 ABC transporter JJL53_18515 PF12848 ABC transporter JJL53_18525 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ JJL53_18550 PF05598 Transposase domain (DUF772) JJL53_18550 PF01609 Transposase DDE domain JJL53_18560 PF01609 Transposase DDE domain JJL53_18560 PF13808 DDE_Tnp_1-associated JJL53_18575 PF00474 Sodium:solute symporter family JJL53_18580 PF17969 L,D-transpeptidase C-terminal domain JJL53_18580 PF03734 L,D-transpeptidase catalytic domain JJL53_18585 PF00924 Mechanosensitive ion channel JJL53_18590 PF00871 Acetokinase family JJL53_18595 PF04074 YhcH/YjgK/YiaL JJL53_18610 PF13302 Acetyltransferase (GNAT) domain JJL53_18615 PF03413 Peptidase propeptide and YPEB domain JJL53_18615 PF01447 Thermolysin metallopeptidase, catalytic domain JJL53_18615 PF02868 Thermolysin metallopeptidase, alpha-helical domain JJL53_18615 PF04151 Bacterial pre-peptidase C-terminal domain JJL53_18615 PF07504 Fungalysin/Thermolysin Propeptide Motif JJL53_18625 PF01609 Transposase DDE domain JJL53_18625 PF13808 DDE_Tnp_1-associated JJL53_18635 PF01609 Transposase DDE domain JJL53_18635 PF13808 DDE_Tnp_1-associated JJL53_18640 PF07690 Major Facilitator Superfamily JJL53_18660 PF06826 Predicted Permease Membrane Region JJL53_18660 PF02080 TrkA-C domain JJL53_18665 PF03006 Haemolysin-III related JJL53_18670 PF00282 Pyridoxal-dependent decarboxylase conserved domain JJL53_18675 PF04279 Intracellular septation protein A JJL53_18680 PF03795 YCII-related domain JJL53_18685 PF00459 Inositol monophosphatase family JJL53_18695 PF00483 Nucleotidyl transferase JJL53_18700 PF13006 Insertion element 4 transposase N-terminal JJL53_18700 PF01609 Transposase DDE domain JJL53_18705 PF00854 POT family JJL53_18710 PF00072 Response regulator receiver domain JJL53_18740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_18750 PF01207 Dihydrouridine synthase (Dus) JJL53_18755 PF02954 Bacterial regulatory protein, Fis family JJL53_18760 PF01810 LysE type translocator JJL53_18790 PF01521 Iron-sulphur cluster biosynthesis JJL53_18800 PF00654 Voltage gated chloride channel JJL53_18805 PF00202 Aminotransferase class-III JJL53_18825 PF01569 PAP2 superfamily JJL53_18835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_18835 PF03466 LysR substrate binding domain JJL53_18840 PF00893 Small Multidrug Resistance protein JJL53_18845 PF00893 Small Multidrug Resistance protein JJL53_18850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JJL53_18855 PF14814 Bifunctional transglycosylase second domain JJL53_18855 PF00905 Penicillin binding protein transpeptidase domain JJL53_18855 PF00912 Transglycosylase JJL53_18860 PF04408 Helicase associated domain (HA2) JJL53_18860 PF00270 DEAD/DEAH box helicase JJL53_18860 PF08482 ATP-dependent helicase C-terminal JJL53_18860 PF00271 Helicase conserved C-terminal domain JJL53_18865 PF02834 LigT like Phosphoesterase JJL53_18870 PF03749 Sugar fermentation stimulation protein RE domain JJL53_18870 PF17746 SfsA N-terminal OB domain JJL53_18875 PF01258 Prokaryotic dksA/traR C4-type zinc finger JJL53_18880 PF00749 tRNA synthetases class I (E and Q), catalytic domain JJL53_18885 PF01743 Poly A polymerase head domain JJL53_18885 PF12626 Polymerase A arginine-rich C-terminus JJL53_18885 PF12627 Probable RNA and SrmB- binding site of polymerase A JJL53_18890 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JJL53_18895 PF02548 Ketopantoate hydroxymethyltransferase JJL53_18900 PF02569 Pantoate-beta-alanine ligase JJL53_18910 PF01061 ABC-2 type transporter JJL53_18915 PF00005 ABC transporter JJL53_18920 PF00156 Phosphoribosyl transferase domain JJL53_18925 PF00440 Bacterial regulatory proteins, tetR family JJL53_18930 PF02441 Flavoprotein JJL53_18935 PF08245 Mur ligase middle domain JJL53_18935 PF02875 Mur ligase family, glutamate ligase domain JJL53_18935 PF01225 Mur ligase family, catalytic domain JJL53_18940 PF00719 Inorganic pyrophosphatase JJL53_18955 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) JJL53_18970 PF00005 ABC transporter JJL53_18990 PF08447 PAS fold JJL53_18990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_19000 PF01609 Transposase DDE domain JJL53_19015 PF03600 Citrate transporter JJL53_19015 PF02080 TrkA-C domain JJL53_19020 PF00009 Elongation factor Tu GTP binding domain JJL53_19025 PF01507 Phosphoadenosine phosphosulfate reductase family JJL53_19030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJL53_19030 PF14824 Sirohaem biosynthesis protein central JJL53_19030 PF10414 Sirohaem synthase dimerisation region JJL53_19035 PF16200 C-terminal region of band_7 JJL53_19035 PF01145 SPFH domain / Band 7 family JJL53_19040 PF01957 NfeD-like C-terminal, partner-binding JJL53_19045 PF01610 Transposase JJL53_19045 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_19045 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_19055 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JJL53_19055 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JJL53_19060 PF07690 Major Facilitator Superfamily JJL53_19065 PF01725 Ham1 family JJL53_19070 PF04055 Radical SAM superfamily JJL53_19070 PF06969 HemN C-terminal domain JJL53_19075 PF03889 Alternative ribosome-rescue factor A JJL53_19085 PF13411 MerR HTH family regulatory protein JJL53_19090 PF01609 Transposase DDE domain JJL53_19090 PF13006 Insertion element 4 transposase N-terminal JJL53_19095 PF01808 AICARFT/IMPCHase bienzyme JJL53_19095 PF02142 MGS-like domain JJL53_19100 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JJL53_19100 PF02843 Phosphoribosylglycinamide synthetase, C domain JJL53_19100 PF02844 Phosphoribosylglycinamide synthetase, N domain JJL53_19115 PF00128 Alpha amylase, catalytic domain JJL53_19125 PF04545 Sigma-70, region 4 JJL53_19125 PF00140 Sigma-70 factor, region 1.2 JJL53_19125 PF03979 Sigma-70 factor, region 1.1 JJL53_19125 PF04539 Sigma-70 region 3 JJL53_19125 PF04542 Sigma-70 region 2 JJL53_19125 PF04546 Sigma-70, non-essential region JJL53_19130 PF10410 DnaB-helicase binding domain of primase JJL53_19130 PF01807 CHC2 zinc finger JJL53_19130 PF08275 DNA primase catalytic core, N-terminal domain JJL53_19130 PF08278 DNA primase DnaG DnaB-binding JJL53_19135 PF09424 Yqey-like protein JJL53_19140 PF01165 Ribosomal protein S21 JJL53_19145 PF00814 Glycoprotease family JJL53_19150 PF04542 Sigma-70 region 2 JJL53_19150 PF00140 Sigma-70 factor, region 1.2 JJL53_19150 PF04539 Sigma-70 region 3 JJL53_19150 PF04545 Sigma-70, region 4 JJL53_19160 PF05598 Transposase domain (DUF772) JJL53_19160 PF01609 Transposase DDE domain JJL53_19165 PF01551 Peptidase family M23 JJL53_19165 PF01476 LysM domain JJL53_19170 PF09335 SNARE associated Golgi protein JJL53_19180 PF01975 Survival protein SurE JJL53_19185 PF01142 tRNA pseudouridine synthase D (TruD) JJL53_19190 PF02542 YgbB family JJL53_19195 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase JJL53_19200 PF04977 Septum formation initiator JJL53_19205 PF00113 Enolase, C-terminal TIM barrel domain JJL53_19205 PF03952 Enolase, N-terminal domain JJL53_19210 PF00117 Glutamine amidotransferase class-I JJL53_19210 PF06418 CTP synthase N-terminus JJL53_19215 PF03819 MazG nucleotide pyrophosphohydrolase domain JJL53_19220 PF02824 TGS domain JJL53_19220 PF13291 ACT domain JJL53_19220 PF04607 Region found in RelA / SpoT proteins JJL53_19225 PF01938 TRAM domain JJL53_19225 PF05958 tRNA (Uracil-5-)-methyltransferase JJL53_19230 PF00672 HAMP domain JJL53_19230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_19230 PF00512 His Kinase A (phospho-acceptor) domain JJL53_19230 PF01627 Hpt domain JJL53_19230 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JJL53_19230 PF00072 Response regulator receiver domain JJL53_19235 PF07308 Protein of unknown function (DUF1456) JJL53_19240 PF01510 N-acetylmuramoyl-L-alanine amidase JJL53_19245 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ JJL53_19250 PF02565 Recombination protein O C terminal JJL53_19250 PF11967 Recombination protein O N terminal JJL53_19255 PF07650 KH domain JJL53_19255 PF01926 50S ribosome-binding GTPase JJL53_19260 PF00035 Double-stranded RNA binding motif JJL53_19260 PF14622 Ribonuclease-III-like JJL53_19265 PF10502 Signal peptidase, peptidase S26 JJL53_19270 PF00679 Elongation factor G C-terminus JJL53_19270 PF06421 GTP-binding protein LepA C-terminus JJL53_19270 PF00009 Elongation factor Tu GTP binding domain JJL53_19270 PF03144 Elongation factor Tu domain 2 JJL53_19280 PF17188 MucB/RseB C-terminal domain JJL53_19280 PF03888 MucB/RseB N-terminal domain JJL53_19285 PF03872 Anti sigma-E protein RseA, N-terminal domain JJL53_19285 PF03873 Anti sigma-E protein RseA, C-terminal domain JJL53_19290 PF04542 Sigma-70 region 2 JJL53_19290 PF08281 Sigma-70, region 4 JJL53_19295 PF00890 FAD binding domain JJL53_19295 PF02910 Fumarate reductase flavoprotein C-term JJL53_19305 PF03937 Flavinator of succinate dehydrogenase JJL53_19310 PF01571 Aminomethyltransferase folate-binding domain JJL53_19315 PF03466 LysR substrate binding domain JJL53_19315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_19330 PF03091 CutA1 divalent ion tolerance protein JJL53_19335 PF02683 Cytochrome C biogenesis protein transmembrane region JJL53_19335 PF11412 Disulphide bond corrector protein DsbC JJL53_19345 PF01266 FAD dependent oxidoreductase JJL53_19350 PF01116 Fructose-bisphosphate aldolase class-II JJL53_19355 PF00162 Phosphoglycerate kinase JJL53_19360 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JJL53_19360 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JJL53_19365 PF00480 ROK family JJL53_19370 PF01208 Uroporphyrinogen decarboxylase (URO-D) JJL53_19375 PF09297 NADH pyrophosphatase zinc ribbon domain JJL53_19375 PF00293 NUDIX domain JJL53_19380 PF08239 Bacterial SH3 domain JJL53_19385 PF00520 Ion transport protein JJL53_19385 PF00027 Cyclic nucleotide-binding domain JJL53_19390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_19390 PF00672 HAMP domain JJL53_19400 PF03710 Glutamate-ammonia ligase adenylyltransferase JJL53_19400 PF08335 GlnD PII-uridylyltransferase JJL53_19415 PF00326 Prolyl oligopeptidase family JJL53_19415 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJL53_19420 PF13194 Domain of unknown function (DUF4010) JJL53_19425 PF12464 Maltose acetyltransferase JJL53_19425 PF14602 Hexapeptide repeat of succinyl-transferase JJL53_19465 PF14698 Argininosuccinate lyase C-terminal JJL53_19465 PF00206 Lyase JJL53_19470 PF00764 Arginosuccinate synthase JJL53_19475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JJL53_19475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JJL53_19480 PF00696 Amino acid kinase family JJL53_19485 PF02774 Semialdehyde dehydrogenase, dimerisation domain JJL53_19485 PF01118 Semialdehyde dehydrogenase, NAD binding domain JJL53_19490 PF01546 Peptidase family M20/M25/M40 JJL53_19490 PF07687 Peptidase dimerisation domain JJL53_19495 PF00311 Phosphoenolpyruvate carboxylase JJL53_19500 PF00990 Diguanylate cyclase, GGDEF domain JJL53_19505 PF04073 Aminoacyl-tRNA editing domain JJL53_19535 PF00392 Bacterial regulatory proteins, gntR family JJL53_19535 PF00155 Aminotransferase class I and II JJL53_19545 PF03466 LysR substrate binding domain JJL53_19545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_19550 PF03788 LrgA family JJL53_19555 PF04172 LrgB-like family JJL53_19560 PF03447 Homoserine dehydrogenase, NAD binding domain JJL53_19560 PF00696 Amino acid kinase family JJL53_19560 PF00742 Homoserine dehydrogenase JJL53_19565 PF01053 Cys/Met metabolism PLP-dependent enzyme JJL53_19570 PF01340 Met Apo-repressor, MetJ JJL53_19575 PF12833 Helix-turn-helix domain JJL53_19575 PF02311 AraC-like ligand binding domain JJL53_19580 PF01588 Putative tRNA binding domain JJL53_19585 PF03222 Tryptophan/tyrosine permease family JJL53_19590 PF00459 Inositol monophosphatase family JJL53_19595 PF00293 NUDIX domain JJL53_19600 PF13419 Haloacid dehalogenase-like hydrolase JJL53_19615 PF13737 Transposase DDE domain JJL53_19625 PF00196 Bacterial regulatory proteins, luxR family JJL53_19630 PF01203 Type II secretion system (T2SS), protein N JJL53_19635 PF04612 Type II secretion system (T2SS), protein M JJL53_19640 PF12693 GspL periplasmic domain JJL53_19640 PF05134 Type II secretion system (T2SS), protein L JJL53_19645 PF03934 Type II secretion system (T2SS), protein K JJL53_19655 PF07963 Prokaryotic N-terminal methylation motif JJL53_19655 PF11612 Type II secretion system (T2SS), protein J JJL53_19660 PF07963 Prokaryotic N-terminal methylation motif JJL53_19660 PF02501 Type II secretion system (T2SS), protein I JJL53_19665 PF12019 Type II transport protein GspH JJL53_19665 PF07963 Prokaryotic N-terminal methylation motif JJL53_19670 PF07963 Prokaryotic N-terminal methylation motif JJL53_19670 PF08334 Type II secretion system (T2SS), protein G JJL53_19675 PF00482 Type II secretion system (T2SS), protein F JJL53_19680 PF00437 Type II/IV secretion system protein JJL53_19685 PF03958 Bacterial type II/III secretion system short domain JJL53_19685 PF00263 Bacterial type II and III secretion system protein JJL53_19690 PF11356 Type II secretion system protein C JJL53_19695 PF01479 S4 domain JJL53_19700 PF01430 Hsp33 protein JJL53_19705 PF01293 Phosphoenolpyruvate carboxykinase JJL53_19715 PF01321 Creatinase/Prolidase N-terminal domain JJL53_19715 PF00557 Metallopeptidase family M24 JJL53_19725 PF05433 Glycine zipper 2TM domain JJL53_19735 PF01865 Protein of unknown function DUF47 JJL53_19740 PF01384 Phosphate transporter family JJL53_19745 PF01966 HD domain JJL53_19745 PF01743 Poly A polymerase head domain JJL53_19745 PF12627 Probable RNA and SrmB- binding site of polymerase A JJL53_19750 PF13401 AAA domain JJL53_19750 PF01471 Putative peptidoglycan binding domain JJL53_19755 PF16537 Type II secretion system protein B JJL53_19760 PF00633 Helix-hairpin-helix motif JJL53_19760 PF00730 HhH-GPD superfamily base excision DNA repair protein JJL53_19760 PF14815 NUDIX domain JJL53_19760 PF10576 Iron-sulfur binding domain of endonuclease III JJL53_19765 PF04362 Bacterial Fe(2+) trafficking JJL53_19770 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain JJL53_19770 PF01464 Transglycosylase SLT domain JJL53_19780 PF00657 GDSL-like Lipase/Acylhydrolase JJL53_19785 PF01389 OmpA-like transmembrane domain JJL53_19785 PF00691 OmpA family JJL53_19790 PF03886 ABC-type transport auxiliary lipoprotein component JJL53_19795 PF02470 MlaD protein JJL53_19800 PF04403 Paraquat-inducible protein A JJL53_19805 PF17209 Hfq protein JJL53_19810 PF13419 Haloacid dehalogenase-like hydrolase JJL53_19815 PF01590 GAF domain JJL53_19815 PF00990 Diguanylate cyclase, GGDEF domain JJL53_19815 PF00563 EAL domain JJL53_19815 PF00360 Phytochrome region JJL53_19820 PF00701 Dihydrodipicolinate synthetase family JJL53_19825 PF08468 Methyltransferase small domain N-terminal JJL53_19825 PF05175 Methyltransferase small domain JJL53_19830 PF00483 Nucleotidyl transferase JJL53_19835 PF00534 Glycosyl transferases group 1 JJL53_19835 PF08323 Starch synthase catalytic domain JJL53_19875 PF03553 Na+/H+ antiporter family JJL53_19880 PF03466 LysR substrate binding domain JJL53_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_19885 PF13416 Bacterial extracellular solute-binding protein JJL53_19890 PF08402 TOBE domain JJL53_19890 PF00005 ABC transporter JJL53_19900 PF13808 DDE_Tnp_1-associated JJL53_19900 PF01609 Transposase DDE domain JJL53_19910 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_19915 PF00171 Aldehyde dehydrogenase family JJL53_19920 PF01040 UbiA prenyltransferase family JJL53_19925 PF02628 Cytochrome oxidase assembly protein JJL53_19945 PF00510 Cytochrome c oxidase subunit III JJL53_19950 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 JJL53_19955 PF00115 Cytochrome C and Quinol oxidase polypeptide I JJL53_19960 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JJL53_19960 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JJL53_19965 PF17176 tRNA-binding domain JJL53_19965 PF08351 Domain of unknown function (DUF1726) JJL53_19965 PF05127 Helicase JJL53_19965 PF13718 GNAT acetyltransferase 2 JJL53_19975 PF04324 BFD-like [2Fe-2S] binding domain JJL53_19980 PF00210 Ferritin-like domain JJL53_19985 PF02142 MGS-like domain JJL53_20000 PF01609 Transposase DDE domain JJL53_20000 PF13808 DDE_Tnp_1-associated JJL53_20005 PF17763 Glutaminase/Asparaginase C-terminal domain JJL53_20005 PF00710 Asparaginase, N-terminal JJL53_20015 PF00356 Bacterial regulatory proteins, lacI family JJL53_20025 PF00480 ROK family JJL53_20030 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JJL53_20035 PF00232 Glycosyl hydrolase family 1 JJL53_20040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_20040 PF02378 Phosphotransferase system, EIIC JJL53_20045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JJL53_20050 PF02378 Phosphotransferase system, EIIC JJL53_20060 PF00356 Bacterial regulatory proteins, lacI family JJL53_20065 PF00367 phosphotransferase system, EIIB JJL53_20065 PF02378 Phosphotransferase system, EIIC JJL53_20070 PF00128 Alpha amylase, catalytic domain JJL53_20070 PF11941 Domain of unknown function (DUF3459) JJL53_20075 PF12464 Maltose acetyltransferase JJL53_20075 PF14602 Hexapeptide repeat of succinyl-transferase JJL53_20080 PF01037 Lrp/AsnC ligand binding domain JJL53_20085 PF00892 EamA-like transporter family JJL53_20110 PF01609 Transposase DDE domain JJL53_20120 PF00691 OmpA family JJL53_20120 PF01389 OmpA-like transmembrane domain JJL53_20145 PF02660 Glycerol-3-phosphate acyltransferase JJL53_20150 PF02152 Dihydroneopterin aldolase JJL53_20155 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JJL53_20165 PF07690 Major Facilitator Superfamily JJL53_20170 PF02492 CobW/HypB/UreG, nucleotide-binding domain JJL53_20170 PF07683 Cobalamin synthesis protein cobW C-terminal domain JJL53_20180 PF01810 LysE type translocator JJL53_20185 PF03466 LysR substrate binding domain JJL53_20185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_20190 PF12792 CSS motif domain associated with EAL JJL53_20190 PF00563 EAL domain JJL53_20195 PF11791 Aconitate B N-terminal domain JJL53_20195 PF06434 Aconitate hydratase 2 N-terminus JJL53_20195 PF00330 Aconitase family (aconitate hydratase) JJL53_20200 PF01734 Patatin-like phospholipase JJL53_20205 PF02743 Cache domain JJL53_20205 PF00672 HAMP domain JJL53_20205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JJL53_20220 PF05230 MASE2 domain JJL53_20220 PF00990 Diguanylate cyclase, GGDEF domain JJL53_20225 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_20225 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_20230 PF02817 e3 binding domain JJL53_20230 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JJL53_20230 PF00364 Biotin-requiring enzyme JJL53_20235 PF17831 Pyruvate dehydrogenase E1 component middle domain JJL53_20235 PF00456 Transketolase, thiamine diphosphate binding domain JJL53_20240 PF00392 Bacterial regulatory proteins, gntR family JJL53_20240 PF07729 FCD domain JJL53_20245 PF01510 N-acetylmuramoyl-L-alanine amidase JJL53_20255 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JJL53_20255 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JJL53_20260 PF01609 Transposase DDE domain JJL53_20260 PF13808 DDE_Tnp_1-associated JJL53_20270 PF00437 Type II/IV secretion system protein JJL53_20270 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain JJL53_20275 PF00482 Type II secretion system (T2SS), protein F JJL53_20280 PF06750 Bacterial Peptidase A24 N-terminal domain JJL53_20280 PF01478 Type IV leader peptidase family JJL53_20285 PF01121 Dephospho-CoA kinase JJL53_20290 PF07072 Cell division protein JJL53_20295 PF03884 DNA gyrase inhibitor YacG JJL53_20300 PF00293 NUDIX domain JJL53_20305 PF02810 SEC-C motif JJL53_20305 PF07517 SecA DEAD-like domain JJL53_20305 PF01043 SecA preprotein cross-linking domain JJL53_20305 PF07516 SecA Wing and Scaffold domain JJL53_20315 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase JJL53_20320 PF12327 FtsZ family, C-terminal domain JJL53_20320 PF00091 Tubulin/FtsZ family, GTPase domain JJL53_20325 PF02491 SHS2 domain inserted in FTSA JJL53_20330 PF08478 POTRA domain, FtsQ-type JJL53_20330 PF03799 Cell division protein FtsQ JJL53_20335 PF01225 Mur ligase family, catalytic domain JJL53_20335 PF02875 Mur ligase family, glutamate ligase domain JJL53_20335 PF08245 Mur ligase middle domain JJL53_20340 PF04101 Glycosyltransferase family 28 C-terminal domain JJL53_20340 PF03033 Glycosyltransferase family 28 N-terminal domain JJL53_20345 PF01098 Cell cycle protein JJL53_20350 PF08245 Mur ligase middle domain JJL53_20350 PF02875 Mur ligase family, glutamate ligase domain JJL53_20355 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JJL53_20355 PF00953 Glycosyl transferase family 4 JJL53_20360 PF01225 Mur ligase family, catalytic domain JJL53_20360 PF08245 Mur ligase middle domain JJL53_20360 PF02875 Mur ligase family, glutamate ligase domain JJL53_20365 PF08245 Mur ligase middle domain JJL53_20365 PF01225 Mur ligase family, catalytic domain JJL53_20365 PF02875 Mur ligase family, glutamate ligase domain JJL53_20370 PF03717 Penicillin-binding Protein dimerisation domain JJL53_20370 PF00905 Penicillin binding protein transpeptidase domain JJL53_20375 PF04999 Cell division protein FtsL JJL53_20380 PF01795 MraW methylase family JJL53_20385 PF02381 MraZ protein, putative antitoxin-like JJL53_20410 PF01609 Transposase DDE domain JJL53_20410 PF13808 DDE_Tnp_1-associated JJL53_20440 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JJL53_20445 PF04348 LppC putative lipoprotein JJL53_20450 PF02021 Uncharacterised protein family UPF0102 JJL53_20455 PF13580 SIS domain JJL53_20460 PF04972 BON domain JJL53_20465 PF04386 Stringent starvation protein B JJL53_20470 PF00043 Glutathione S-transferase, C-terminal domain JJL53_20470 PF02798 Glutathione S-transferase, N-terminal domain JJL53_20475 PF02167 Cytochrome C1 family JJL53_20480 PF00033 Cytochrome b/b6/petB JJL53_20480 PF00032 Cytochrome b(C-terminal)/b6/petD JJL53_20485 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal JJL53_20485 PF00355 Rieske [2Fe-2S] domain JJL53_20490 PF00380 Ribosomal protein S9/S16 JJL53_20495 PF00572 Ribosomal protein L13 JJL53_20500 PF03969 AFG1-like ATPase JJL53_20510 PF13180 PDZ domain JJL53_20510 PF00595 PDZ domain JJL53_20515 PF13180 PDZ domain JJL53_20525 PF00381 PTS HPr component phosphorylation site JJL53_20530 PF03668 P-loop ATPase protein family JJL53_20535 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JJL53_20540 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JJL53_20545 PF04552 Sigma-54, DNA binding domain JJL53_20545 PF00309 Sigma-54 factor, Activator interacting domain (AID) JJL53_20545 PF04963 Sigma-54 factor, core binding domain JJL53_20550 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJL53_20550 PF00005 ABC transporter JJL53_20555 PF03968 OstA-like protein JJL53_20560 PF06835 Lipopolysaccharide-assembly, LptC-related JJL53_20570 PF00571 CBS domain JJL53_20570 PF01380 SIS domain JJL53_20575 PF00005 ABC transporter JJL53_20580 PF02405 Permease MlaE JJL53_20585 PF02470 MlaD protein JJL53_20590 PF05494 MlaC protein JJL53_20600 PF01722 BolA-like protein JJL53_20605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JJL53_20610 PF01523 Putative modulator of DNA gyrase JJL53_20615 PF04751 Protein of unknown function (DUF615) JJL53_20625 PF01609 Transposase DDE domain JJL53_20630 PF04363 Protein of unknown function (DUF496) JJL53_20665 PF07883 Cupin domain JJL53_20665 PF01381 Helix-turn-helix JJL53_20670 PF03594 Benzoate membrane transport protein JJL53_20680 PF01037 Lrp/AsnC ligand binding domain JJL53_20690 PF04204 Homoserine O-succinyltransferase JJL53_20700 PF02464 Competence-damaged protein JJL53_20700 PF00994 Probable molybdopterin binding domain JJL53_20705 PF04307 LexA-binding, inner membrane-associated putative hydrolase JJL53_20720 PF07722 Peptidase C26 JJL53_20730 PF01609 Transposase DDE domain JJL53_20730 PF13006 Insertion element 4 transposase N-terminal JJL53_20735 PF13419 Haloacid dehalogenase-like hydrolase JJL53_20740 PF00589 Phage integrase family JJL53_20740 PF02899 Phage integrase, N-terminal SAM-like domain JJL53_20750 PF01678 Diaminopimelate epimerase JJL53_20755 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JJL53_20755 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JJL53_20765 PF01491 Frataxin-like domain JJL53_20770 PF02230 Phospholipase/Carboxylesterase JJL53_20775 PF01295 Adenylate cyclase, class-I JJL53_20775 PF12633 Adenylate cyclase NT domain JJL53_20780 PF03900 Porphobilinogen deaminase, C-terminal domain JJL53_20780 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JJL53_20785 PF02602 Uroporphyrinogen-III synthase HemD JJL53_20790 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase JJL53_20795 PF07219 HemY protein N-terminus JJL53_20795 PF07719 Tetratricopeptide repeat JJL53_20800 PF13006 Insertion element 4 transposase N-terminal JJL53_20800 PF01609 Transposase DDE domain JJL53_20805 PF03692 Putative zinc- or iron-chelating domain JJL53_20810 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JJL53_20815 PF00267 Gram-negative porin JJL53_20820 PF00583 Acetyltransferase (GNAT) family JJL53_20825 PF07715 TonB-dependent Receptor Plug Domain JJL53_20825 PF00593 TonB dependent receptor JJL53_20840 PF01638 HxlR-like helix-turn-helix JJL53_20845 PF08803 Putative mono-oxygenase ydhR JJL53_20855 PF06055 Exopolysaccharide synthesis, ExoD JJL53_20860 PF00990 Diguanylate cyclase, GGDEF domain JJL53_20865 PF13036 Peptidoglycan-synthase activator LpoB JJL53_20885 PF01609 Transposase DDE domain JJL53_20885 PF05598 Transposase domain (DUF772) JJL53_20890 PF05598 Transposase domain (DUF772) JJL53_20890 PF01609 Transposase DDE domain JJL53_20895 PF01609 Transposase DDE domain JJL53_20900 PF00005 ABC transporter JJL53_20905 PF04055 Radical SAM superfamily JJL53_20905 PF06968 Biotin and Thiamin Synthesis associated domain JJL53_20910 PF05690 Thiazole biosynthesis protein ThiG JJL53_20920 PF00899 ThiF family JJL53_20925 PF02581 Thiamine monophosphate synthase JJL53_20930 PF01964 Radical SAM ThiC family JJL53_20930 PF13667 ThiC-associated domain JJL53_20935 PF01609 Transposase DDE domain JJL53_20945 PF13808 DDE_Tnp_1-associated JJL53_20945 PF01609 Transposase DDE domain JJL53_20955 PF01609 Transposase DDE domain JJL53_20955 PF13808 DDE_Tnp_1-associated JJL53_20965 PF02281 Transposase Tn5 dimerisation domain JJL53_20965 PF14706 Transposase DNA-binding JJL53_20965 PF01609 Transposase DDE domain JJL53_20980 PF00072 Response regulator receiver domain JJL53_20980 PF00486 Transcriptional regulatory protein, C terminal JJL53_20990 PF18030 RimK PreATP-grasp domain JJL53_20990 PF08443 RimK-like ATP-grasp domain JJL53_20995 PF02310 B12 binding domain JJL53_20995 PF02574 Homocysteine S-methyltransferase JJL53_20995 PF00809 Pterin binding enzyme JJL53_20995 PF02965 Vitamin B12 dependent methionine synthase, activation domain JJL53_20995 PF02607 B12 binding domain JJL53_21000 PF00999 Sodium/hydrogen exchanger family JJL53_21050 PF01609 Transposase DDE domain JJL53_21050 PF05598 Transposase domain (DUF772) JJL53_21055 PF01695 IstB-like ATP binding protein JJL53_21060 PF01609 Transposase DDE domain JJL53_21060 PF13808 DDE_Tnp_1-associated JJL53_21065 PF01609 Transposase DDE domain JJL53_21070 PF01609 Transposase DDE domain JJL53_21095 PF01609 Transposase DDE domain JJL53_21110 PF07690 Major Facilitator Superfamily JJL53_21115 PF01914 MarC family integral membrane protein JJL53_21125 PF01523 Putative modulator of DNA gyrase JJL53_21130 PF00795 Carbon-nitrogen hydrolase JJL53_21135 PF13116 Protein of unknown function JJL53_21135 PF13502 AsmA-like C-terminal region JJL53_21140 PF00575 S1 RNA binding domain JJL53_21140 PF10150 Ribonuclease E/G family JJL53_21145 PF02545 Maf-like protein JJL53_21150 PF04093 rod shape-determining protein MreD JJL53_21155 PF04085 rod shape-determining protein MreC JJL53_21170 PF13808 DDE_Tnp_1-associated JJL53_21170 PF01609 Transposase DDE domain JJL53_21205 PF00990 Diguanylate cyclase, GGDEF domain JJL53_21205 PF17157 Gammaproteobacterial periplasmic sensor domain JJL53_21205 PF00563 EAL domain JJL53_21210 PF01609 Transposase DDE domain JJL53_21210 PF05598 Transposase domain (DUF772) JJL53_21215 PF12792 CSS motif domain associated with EAL JJL53_21215 PF00563 EAL domain JJL53_21220 PF01699 Sodium/calcium exchanger protein JJL53_21225 PF00221 Aromatic amino acid lyase JJL53_21230 PF17392 Urocanase C-terminal domain JJL53_21230 PF17391 Urocanase N-terminal domain JJL53_21230 PF01175 Urocanase Rossmann-like domain JJL53_21235 PF00491 Arginase family JJL53_21240 PF01979 Amidohydrolase family JJL53_21245 PF01609 Transposase DDE domain JJL53_21245 PF13006 Insertion element 4 transposase N-terminal JJL53_21250 PF07702 UTRA domain JJL53_21250 PF00392 Bacterial regulatory proteins, gntR family JJL53_21255 PF00484 Carbonic anhydrase JJL53_21260 PF00140 Sigma-70 factor, region 1.2 JJL53_21260 PF04542 Sigma-70 region 2 JJL53_21260 PF04545 Sigma-70, region 4 JJL53_21265 PF18075 FtsX extracellular domain JJL53_21270 PF00005 ABC transporter JJL53_21275 PF00448 SRP54-type protein, GTPase domain JJL53_21275 PF02881 SRP54-type protein, helical bundle domain JJL53_21290 PF07226 Protein of unknown function (DUF1422) JJL53_21295 PF00440 Bacterial regulatory proteins, tetR family JJL53_21305 PF13091 PLD-like domain JJL53_21320 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_21320 PF01610 Transposase JJL53_21320 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_21335 PF02416 mttA/Hcf106 family JJL53_21340 PF03466 LysR substrate binding domain JJL53_21340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_21345 PF01914 MarC family integral membrane protein JJL53_21350 PF10678 Protein of unknown function (DUF2492) JJL53_21355 PF00375 Sodium:dicarboxylate symporter family JJL53_21365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_21365 PF03466 LysR substrate binding domain JJL53_21370 PF13533 Biotin-lipoyl like JJL53_21375 PF07690 Major Facilitator Superfamily JJL53_21380 PF07947 YhhN family JJL53_21385 PF12323 Helix-turn-helix domain JJL53_21410 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain JJL53_21410 PF00326 Prolyl oligopeptidase family JJL53_21425 PF02525 Flavodoxin-like fold JJL53_21430 PF00999 Sodium/hydrogen exchanger family JJL53_21430 PF02254 TrkA-N domain JJL53_21455 PF00665 Integrase core domain JJL53_21495 PF00665 Integrase core domain JJL53_21500 PF01695 IstB-like ATP binding protein JJL53_21505 PF01196 Ribosomal protein L17 JJL53_21510 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain JJL53_21510 PF01000 RNA polymerase Rpb3/RpoA insert domain JJL53_21510 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain JJL53_21515 PF00163 Ribosomal protein S4/S9 N-terminal domain JJL53_21515 PF01479 S4 domain JJL53_21520 PF00411 Ribosomal protein S11 JJL53_21525 PF00416 Ribosomal protein S13/S18 JJL53_21530 PF00444 Ribosomal protein L36 JJL53_21535 PF00344 SecY translocase JJL53_21540 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A JJL53_21545 PF00327 Ribosomal protein L30p/L7e JJL53_21550 PF00333 Ribosomal protein S5, N-terminal domain JJL53_21550 PF03719 Ribosomal protein S5, C-terminal domain JJL53_21555 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast JJL53_21560 PF00347 Ribosomal protein L6 JJL53_21565 PF00410 Ribosomal protein S8 JJL53_21570 PF00253 Ribosomal protein S14p/S29e JJL53_21575 PF00673 ribosomal L5P family C-terminus JJL53_21575 PF00281 Ribosomal protein L5 JJL53_21580 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 JJL53_21580 PF00467 KOW motif JJL53_21585 PF00238 Ribosomal protein L14p/L23e JJL53_21590 PF00366 Ribosomal protein S17 JJL53_21595 PF00831 Ribosomal L29 protein JJL53_21600 PF00252 Ribosomal protein L16p/L10e JJL53_21605 PF00189 Ribosomal protein S3, C-terminal domain JJL53_21605 PF07650 KH domain JJL53_21610 PF00237 Ribosomal protein L22p/L17e JJL53_21615 PF00203 Ribosomal protein S19 JJL53_21620 PF03947 Ribosomal Proteins L2, C-terminal domain JJL53_21620 PF00181 Ribosomal Proteins L2, RNA binding domain JJL53_21625 PF00276 Ribosomal protein L23 JJL53_21630 PF00573 Ribosomal protein L4/L1 family JJL53_21635 PF00297 Ribosomal protein L3 JJL53_21640 PF00338 Ribosomal protein S10p/S20e JJL53_21650 PF00672 HAMP domain JJL53_21650 PF00512 His Kinase A (phospho-acceptor) domain JJL53_21650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_21655 PF00486 Transcriptional regulatory protein, C terminal JJL53_21655 PF00072 Response regulator receiver domain JJL53_21660 PF03449 Transcription elongation factor, N-terminal JJL53_21660 PF01272 Transcription elongation factor, GreA/GreB, C-term JJL53_21665 PF09371 Tex-like protein N-terminal domain JJL53_21665 PF17674 HHH domain JJL53_21665 PF00575 S1 RNA binding domain JJL53_21665 PF16921 Tex protein YqgF-like domain JJL53_21680 PF00561 alpha/beta hydrolase fold JJL53_21685 PF00156 Phosphoribosyl transferase domain JJL53_21690 PF01521 Iron-sulphur cluster biosynthesis JJL53_21690 PF01106 NifU-like domain JJL53_21695 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JJL53_21695 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JJL53_21700 PF02556 Preprotein translocase subunit SecB JJL53_21705 PF00581 Rhodanese-like domain JJL53_21710 PF01676 Metalloenzyme superfamily JJL53_21710 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JJL53_21715 PF01551 Peptidase family M23 JJL53_21725 PF00356 Bacterial regulatory proteins, lacI family JJL53_21725 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JJL53_21730 PF01081 KDPG and KHG aldolase JJL53_21735 PF00920 Dehydratase family JJL53_21740 PF01202 Shikimate kinase JJL53_21745 PF02447 GntP family permease JJL53_21750 PF13091 PLD-like domain JJL53_21755 PF00271 Helicase conserved C-terminal domain JJL53_21755 PF00270 DEAD/DEAH box helicase JJL53_21755 PF17191 RecG wedge domain JJL53_21765 PF00583 Acetyltransferase (GNAT) family JJL53_21765 PF09500 Putative thioesterase (yiiD_Cterm) JJL53_21775 PF02580 D-Tyr-tRNA(Tyr) deacylase JJL53_21780 PF03631 Virulence factor BrkB JJL53_21785 PF03631 Virulence factor BrkB JJL53_21790 PF00679 Elongation factor G C-terminus JJL53_21790 PF00009 Elongation factor Tu GTP binding domain JJL53_21790 PF03144 Elongation factor Tu domain 2 JJL53_21795 PF03951 Glutamine synthetase, beta-Grasp domain JJL53_21795 PF00120 Glutamine synthetase, catalytic domain JJL53_21805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_21805 PF00512 His Kinase A (phospho-acceptor) domain JJL53_21805 PF00989 PAS fold JJL53_21810 PF00158 Sigma-54 interaction domain JJL53_21810 PF02954 Bacterial regulatory protein, Fis family JJL53_21810 PF00072 Response regulator receiver domain JJL53_21815 PF00962 Adenosine/AMP deaminase JJL53_21820 PF13808 DDE_Tnp_1-associated JJL53_21820 PF01609 Transposase DDE domain JJL53_21825 PF04055 Radical SAM superfamily JJL53_21825 PF06969 HemN C-terminal domain JJL53_21830 PF10675 Protein of unknown function (DUF2489) JJL53_21835 PF04220 Der GTPase activator (YihI) JJL53_21840 PF00034 Cytochrome c JJL53_21845 PF01926 50S ribosome-binding GTPase JJL53_21850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JJL53_21850 PF08501 Shikimate dehydrogenase substrate binding domain JJL53_21850 PF01488 Shikimate / quinate 5-dehydrogenase JJL53_21855 PF01218 Coproporphyrinogen III oxidase JJL53_21860 PF01300 Telomere recombination JJL53_21865 PF01396 Topoisomerase DNA binding C4 zinc finger JJL53_21870 PF04361 Protein of unknown function (DUF494) JJL53_21875 PF02481 DNA recombination-mediator protein A JJL53_21875 PF17782 DprA winged helix domain JJL53_21885 PF01327 Polypeptide deformylase JJL53_21890 PF00551 Formyl transferase JJL53_21890 PF02911 Formyl transferase, C-terminal domain JJL53_21895 PF01029 NusB family JJL53_21895 PF01189 16S rRNA methyltransferase RsmB/F JJL53_21900 PF02254 TrkA-N domain JJL53_21900 PF02080 TrkA-C domain JJL53_21905 PF02386 Cation transport protein JJL53_21910 PF02646 RmuC family JJL53_21925 PF02082 Transcriptional regulator JJL53_21930 PF00294 pfkB family carbohydrate kinase JJL53_21935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_21935 PF03466 LysR substrate binding domain JJL53_21940 PF02540 NAD synthase JJL53_21940 PF00117 Glutamine amidotransferase class-I JJL53_21940 PF00958 GMP synthase C terminal domain JJL53_21945 PF00171 Aldehyde dehydrogenase family JJL53_21950 PF00202 Aminotransferase class-III JJL53_21955 PF07883 Cupin domain JJL53_21955 PF01381 Helix-turn-helix JJL53_21960 PF00171 Aldehyde dehydrogenase family JJL53_21980 PF00892 EamA-like transporter family JJL53_21985 PF12833 Helix-turn-helix domain JJL53_21990 PF01810 LysE type translocator JJL53_21995 PF04143 Sulphur transport JJL53_22000 PF06206 CpeT/CpcT family (DUF1001) JJL53_22020 PF13361 UvrD-like helicase C-terminal domain JJL53_22020 PF00580 UvrD/REP helicase N-terminal domain JJL53_22025 PF02608 ABC transporter substrate-binding protein PnrA-like JJL53_22030 PF00005 ABC transporter JJL53_22035 PF02653 Branched-chain amino acid transport system / permease component JJL53_22040 PF02653 Branched-chain amino acid transport system / permease component JJL53_22045 PF13006 Insertion element 4 transposase N-terminal JJL53_22045 PF01609 Transposase DDE domain JJL53_22050 PF04151 Bacterial pre-peptidase C-terminal domain JJL53_22050 PF04389 Peptidase family M28 JJL53_22055 PF03466 LysR substrate binding domain JJL53_22055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JJL53_22060 PF00107 Zinc-binding dehydrogenase JJL53_22060 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_22065 PF00756 Putative esterase JJL53_22075 PF03781 Sulfatase-modifying factor enzyme 1 JJL53_22075 PF12867 DinB superfamily JJL53_22080 PF13593 SBF-like CPA transporter family (DUF4137) JJL53_22085 PF13520 Amino acid permease JJL53_22090 PF01588 Putative tRNA binding domain JJL53_22095 PF13520 Amino acid permease JJL53_22100 PF04074 YhcH/YjgK/YiaL JJL53_22105 PF02929 Beta galactosidase small chain JJL53_22105 PF02837 Glycosyl hydrolases family 2, sugar binding domain JJL53_22105 PF00703 Glycosyl hydrolases family 2 JJL53_22105 PF02836 Glycosyl hydrolases family 2, TIM barrel domain JJL53_22105 PF16353 Domain of unknown function(DUF4981) JJL53_22110 PF00872 Transposase, Mutator family JJL53_22120 PF00356 Bacterial regulatory proteins, lacI family JJL53_22160 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_22165 PF01367 5'-3' exonuclease, C-terminal SAM fold JJL53_22165 PF00476 DNA polymerase family A JJL53_22165 PF01612 3'-5' exonuclease JJL53_22165 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JJL53_22175 PF06005 Cell division protein ZapB JJL53_22185 PF06426 Serine acetyltransferase, N-terminal JJL53_22185 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_22190 PF01545 Cation efflux family JJL53_22190 PF16916 Dimerisation domain of Zinc Transporter JJL53_22195 PF00486 Transcriptional regulatory protein, C terminal JJL53_22195 PF00072 Response regulator receiver domain JJL53_22200 PF16527 Two-component sensor protein CpxA, periplasmic domain JJL53_22200 PF00672 HAMP domain JJL53_22200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_22200 PF00512 His Kinase A (phospho-acceptor) domain JJL53_22205 PF00588 SpoU rRNA Methylase family JJL53_22210 PF01554 MatE JJL53_22225 PF00717 Peptidase S24-like JJL53_22225 PF01726 LexA DNA binding domain JJL53_22230 PF01553 Acyltransferase JJL53_22235 PF01040 UbiA prenyltransferase family JJL53_22240 PF04345 Chorismate lyase JJL53_22245 PF03748 Flagellar basal body-associated protein FliL JJL53_22260 PF00107 Zinc-binding dehydrogenase JJL53_22260 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_22275 PF01609 Transposase DDE domain JJL53_22275 PF13808 DDE_Tnp_1-associated JJL53_22280 PF01609 Transposase DDE domain JJL53_22295 PF04932 O-Antigen ligase JJL53_22300 PF13439 Glycosyltransferase Family 4 JJL53_22305 PF01370 NAD dependent epimerase/dehydratase family JJL53_22310 PF00440 Bacterial regulatory proteins, tetR family JJL53_22310 PF08360 QacR-like protein, C-terminal region JJL53_22315 PF00155 Aminotransferase class I and II JJL53_22320 PF00107 Zinc-binding dehydrogenase JJL53_22320 PF08240 Alcohol dehydrogenase GroES-like domain JJL53_22330 PF00563 EAL domain JJL53_22330 PF03707 Bacterial signalling protein N terminal repeat JJL53_22330 PF00990 Diguanylate cyclase, GGDEF domain JJL53_22335 PF00580 UvrD/REP helicase N-terminal domain JJL53_22335 PF13361 UvrD-like helicase C-terminal domain JJL53_22340 PF00266 Aminotransferase class-V JJL53_22345 PF02657 Fe-S metabolism associated domain JJL53_22350 PF00899 ThiF family JJL53_22380 PF12724 Flavodoxin domain JJL53_22385 PF02386 Cation transport protein JJL53_22390 PF09186 Domain of unknown function (DUF1949) JJL53_22390 PF01205 Uncharacterized protein family UPF0029 JJL53_22395 PF00557 Metallopeptidase family M24 JJL53_22400 PF00501 AMP-binding enzyme JJL53_22400 PF13193 AMP-binding enzyme C-terminal domain JJL53_22405 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JJL53_22405 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JJL53_22405 PF00378 Enoyl-CoA hydratase/isomerase JJL53_22410 PF02803 Thiolase, C-terminal domain JJL53_22410 PF00108 Thiolase, N-terminal domain JJL53_22415 PF00072 Response regulator receiver domain JJL53_22415 PF00486 Transcriptional regulatory protein, C terminal JJL53_22420 PF00672 HAMP domain JJL53_22420 PF00512 His Kinase A (phospho-acceptor) domain JJL53_22420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_22425 PF01547 Bacterial extracellular solute-binding protein JJL53_22435 PF01206 Sulfurtransferase TusA JJL53_22440 PF01042 Endoribonuclease L-PSP JJL53_22445 PF00691 OmpA family JJL53_22445 PF13488 Glycine zipper JJL53_22475 PF02091 Glycyl-tRNA synthetase alpha subunit JJL53_22480 PF05746 DALR anticodon binding domain JJL53_22480 PF02092 Glycyl-tRNA synthetase beta subunit JJL53_22490 PF03222 Tryptophan/tyrosine permease family JJL53_22495 PF03222 Tryptophan/tyrosine permease family JJL53_22500 PF13808 DDE_Tnp_1-associated JJL53_22500 PF01609 Transposase DDE domain JJL53_22510 PF01212 Beta-eliminating lyase JJL53_22520 PF12801 4Fe-4S binding domain JJL53_22530 PF18113 Rubredoxin binding C-terminal domain JJL53_22530 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_22535 PF00301 Rubredoxin JJL53_22535 PF00753 Metallo-beta-lactamase superfamily JJL53_22535 PF00258 Flavodoxin JJL53_22540 PF01590 GAF domain JJL53_22540 PF00158 Sigma-54 interaction domain JJL53_22545 PF00356 Bacterial regulatory proteins, lacI family JJL53_22550 PF13458 Periplasmic binding protein JJL53_22555 PF02653 Branched-chain amino acid transport system / permease component JJL53_22560 PF11862 Domain of unknown function (DUF3382) JJL53_22560 PF02653 Branched-chain amino acid transport system / permease component JJL53_22565 PF12399 Branched-chain amino acid ATP-binding cassette transporter JJL53_22565 PF00005 ABC transporter JJL53_22570 PF00005 ABC transporter JJL53_22575 PF12833 Helix-turn-helix domain JJL53_22585 PF00581 Rhodanese-like domain JJL53_22590 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease JJL53_22590 PF01694 Rhomboid family JJL53_22595 PF12262 Bacterial virulence factor lipase N-terminal JJL53_22600 PF04380 Membrane fusogenic activity JJL53_22605 PF01609 Transposase DDE domain JJL53_22605 PF13006 Insertion element 4 transposase N-terminal JJL53_22610 PF00175 Oxidoreductase NAD-binding domain JJL53_22615 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase JJL53_22625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJL53_22625 PF07497 Rho termination factor, RNA-binding domain JJL53_22625 PF07498 Rho termination factor, N-terminal domain JJL53_22630 PF00085 Thioredoxin JJL53_22635 PF00270 DEAD/DEAH box helicase JJL53_22635 PF00271 Helicase conserved C-terminal domain JJL53_22640 PF02541 Ppx/GppA phosphatase family JJL53_22655 PF04445 Putative SAM-dependent methyltransferase JJL53_22660 PF00563 EAL domain JJL53_22660 PF00990 Diguanylate cyclase, GGDEF domain JJL53_22660 PF03707 Bacterial signalling protein N terminal repeat JJL53_22665 PF01432 Peptidase family M3 JJL53_22670 PF00490 Delta-aminolevulinic acid dehydratase JJL53_22675 PF01026 TatD related DNase JJL53_22680 PF00902 Sec-independent protein translocase protein (TatC) JJL53_22685 PF02416 mttA/Hcf106 family JJL53_22690 PF02416 mttA/Hcf106 family JJL53_22695 PF03109 ABC1 family JJL53_22700 PF02036 SCP-2 sterol transfer family JJL53_22705 PF01209 ubiE/COQ5 methyltransferase family JJL53_22710 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JJL53_22715 PF07969 Amidohydrolase family JJL53_22720 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin JJL53_22755 PF03544 Gram-negative bacterial TonB protein C-terminal JJL53_22760 PF02472 Biopolymer transport protein ExbD/TolR JJL53_22765 PF01618 MotA/TolQ/ExbB proton channel family JJL53_22770 PF01618 MotA/TolQ/ExbB proton channel family JJL53_22780 PF00196 Bacterial regulatory proteins, luxR family JJL53_22780 PF03472 Autoinducer binding domain JJL53_22785 PF01380 SIS domain JJL53_22790 PF08220 DeoR-like helix-turn-helix domain JJL53_22790 PF00455 DeoR C terminal sensor domain JJL53_22795 PF00486 Transcriptional regulatory protein, C terminal JJL53_22795 PF00072 Response regulator receiver domain JJL53_22800 PF00672 HAMP domain JJL53_22800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JJL53_22800 PF00512 His Kinase A (phospho-acceptor) domain JJL53_22805 PF00905 Penicillin binding protein transpeptidase domain JJL53_22810 PF06123 Inner membrane protein CreD JJL53_22815 PF12804 MobA-like NTP transferase domain JJL53_22815 PF00132 Bacterial transferase hexapeptide (six repeats) JJL53_22815 PF14602 Hexapeptide repeat of succinyl-transferase JJL53_22820 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JJL53_22820 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JJL53_22825 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJL53_22825 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJL53_22830 PF00231 ATP synthase JJL53_22835 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JJL53_22835 PF00306 ATP synthase alpha/beta chain, C terminal domain JJL53_22835 PF02874 ATP synthase alpha/beta family, beta-barrel domain JJL53_22840 PF00213 ATP synthase delta (OSCP) subunit JJL53_22845 PF00430 ATP synthase B/B' CF(0) JJL53_22850 PF00137 ATP synthase subunit C JJL53_22855 PF00119 ATP synthase A chain JJL53_22865 PF02195 ParB-like nuclease domain JJL53_22865 PF17762 HTH domain found in ParB protein JJL53_22870 PF13614 AAA domain JJL53_22875 PF02527 rRNA small subunit methyltransferase G JJL53_22880 PF01134 Glucose inhibited division protein A JJL53_22880 PF13932 GidA associated domain JJL53_22885 PF00258 Flavodoxin JJL53_22890 PF00593 TonB dependent receptor JJL53_22890 PF07715 TonB-dependent Receptor Plug Domain JJL53_22895 PF00005 ABC transporter JJL53_22900 PF00005 ABC transporter JJL53_22905 PF01497 Periplasmic binding protein JJL53_22910 PF01032 FecCD transport family JJL53_22915 PF10396 GTP-binding protein TrmE N-terminus JJL53_22915 PF12631 MnmE helical domain JJL53_22915 PF01926 50S ribosome-binding GTPase JJL53_22920 PF14849 YidC periplasmic domain JJL53_22920 PF02096 60Kd inner membrane protein JJL53_22925 PF01809 Putative membrane protein insertion efficiency factor JJL53_22930 PF00825 Ribonuclease P JJL53_22935 PF00468 Ribosomal protein L34 JJL53_22940 PF00005 ABC transporter JJL53_22945 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_22950 PF00497 Bacterial extracellular solute-binding proteins, family 3 JJL53_23000 PF00239 Resolvase, N terminal domain JJL53_23000 PF02796 Helix-turn-helix domain of resolvase JJL53_23010 PF01609 Transposase DDE domain JJL53_23010 PF13808 DDE_Tnp_1-associated JJL53_23025 PF00872 Transposase, Mutator family JJL53_23045 PF08378 Nuclease-related domain JJL53_23060 PF01385 Probable transposase JJL53_23060 PF12323 Helix-turn-helix domain JJL53_23060 PF07282 Putative transposase DNA-binding domain JJL53_23070 PF13361 UvrD-like helicase C-terminal domain JJL53_23070 PF00580 UvrD/REP helicase N-terminal domain JJL53_23120 PF12323 Helix-turn-helix domain JJL53_23140 PF07282 Putative transposase DNA-binding domain JJL53_23140 PF12323 Helix-turn-helix domain JJL53_23140 PF01385 Probable transposase JJL53_23160 PF01609 Transposase DDE domain JJL53_23160 PF13808 DDE_Tnp_1-associated JJL53_23165 PF01609 Transposase DDE domain JJL53_23165 PF13808 DDE_Tnp_1-associated JJL53_23200 PF01609 Transposase DDE domain JJL53_23210 PF00817 impB/mucB/samB family JJL53_23210 PF11799 impB/mucB/samB family C-terminal domain JJL53_23210 PF13438 Domain of unknown function (DUF4113) JJL53_23210 PF11798 IMS family HHH motif JJL53_23215 PF00717 Peptidase S24-like JJL53_23225 PF00271 Helicase conserved C-terminal domain JJL53_23225 PF00176 SNF2 family N-terminal domain JJL53_23250 PF01609 Transposase DDE domain JJL53_23255 PF00717 Peptidase S24-like JJL53_23260 PF11799 impB/mucB/samB family C-terminal domain JJL53_23260 PF11798 IMS family HHH motif JJL53_23260 PF13438 Domain of unknown function (DUF4113) JJL53_23260 PF00817 impB/mucB/samB family JJL53_23265 PF00665 Integrase core domain JJL53_23270 PF01695 IstB-like ATP binding protein JJL53_23300 PF07282 Putative transposase DNA-binding domain JJL53_23300 PF01385 Probable transposase JJL53_23300 PF12323 Helix-turn-helix domain JJL53_23320 PF01609 Transposase DDE domain JJL53_23320 PF13808 DDE_Tnp_1-associated JJL53_23335 PF01609 Transposase DDE domain JJL53_23360 PF00176 SNF2 family N-terminal domain JJL53_23360 PF00271 Helicase conserved C-terminal domain JJL53_23375 PF01555 DNA methylase JJL53_23380 PF13808 DDE_Tnp_1-associated JJL53_23380 PF01609 Transposase DDE domain JJL53_23395 PF00210 Ferritin-like domain JJL53_23405 PF02600 Disulfide bond formation protein DsbB JJL53_23410 PF16123 Hydroxyacylglutathione hydrolase C-terminus JJL53_23410 PF00753 Metallo-beta-lactamase superfamily JJL53_23420 PF13817 IS66 C-terminal element JJL53_23420 PF13007 Transposase C of IS166 homeodomain JJL53_23420 PF13005 zinc-finger binding domain of transposase IS66 JJL53_23420 PF03050 Transposase IS66 family JJL53_23425 PF05717 IS66 Orf2 like protein JJL53_23440 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JJL53_23440 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_23455 PF01609 Transposase DDE domain JJL53_23455 PF13808 DDE_Tnp_1-associated JJL53_23465 PF02001 Protein of unknown function DUF134 JJL53_23480 PF01609 Transposase DDE domain JJL53_23510 PF12323 Helix-turn-helix domain JJL53_23520 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system JJL53_23545 PF07282 Putative transposase DNA-binding domain JJL53_23545 PF01385 Probable transposase JJL53_23545 PF12323 Helix-turn-helix domain JJL53_23575 PF13737 Transposase DDE domain JJL53_23580 PF13808 DDE_Tnp_1-associated JJL53_23580 PF01609 Transposase DDE domain JJL53_23595 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion JJL53_23600 PF00005 ABC transporter JJL53_23615 PF18267 Rubredoxin NAD+ reductase C-terminal domain JJL53_23615 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JJL53_23615 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JJL53_23615 PF07992 Pyridine nucleotide-disulphide oxidoreductase JJL53_23615 PF04324 BFD-like [2Fe-2S] binding domain JJL53_23625 PF13806 Rieske-like [2Fe-2S] domain JJL53_23630 PF01226 Formate/nitrite transporter JJL53_23645 PF07282 Putative transposase DNA-binding domain JJL53_23645 PF01385 Probable transposase JJL53_23645 PF12323 Helix-turn-helix domain JJL53_23675 PF07282 Putative transposase DNA-binding domain JJL53_23675 PF01385 Probable transposase JJL53_23675 PF12323 Helix-turn-helix domain JJL53_23680 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_23680 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_23680 PF01610 Transposase JJL53_23700 PF18607 ParA helix turn helix domain JJL53_23700 PF13614 AAA domain JJL53_23715 PF12323 Helix-turn-helix domain JJL53_23740 PF00872 Transposase, Mutator family JJL53_23760 PF12323 Helix-turn-helix domain JJL53_23770 PF12323 Helix-turn-helix domain JJL53_23780 PF00436 Single-strand binding protein family JJL53_23785 PF01385 Probable transposase JJL53_23785 PF07282 Putative transposase DNA-binding domain JJL53_23785 PF12323 Helix-turn-helix domain JJL53_23805 PF07282 Putative transposase DNA-binding domain JJL53_23805 PF01385 Probable transposase JJL53_23805 PF12323 Helix-turn-helix domain JJL53_23865 PF01610 Transposase JJL53_23865 PF13542 Helix-turn-helix domain of transposase family ISL3 JJL53_23865 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 JJL53_23880 PF07282 Putative transposase DNA-binding domain JJL53_23880 PF12323 Helix-turn-helix domain JJL53_23880 PF01385 Probable transposase JJL53_23915 PF01609 Transposase DDE domain JJL53_23980 PF00270 DEAD/DEAH box helicase JJL53_23980 PF00271 Helicase conserved C-terminal domain JJL53_23980 PF17191 RecG wedge domain JJL53_24010 PF13808 DDE_Tnp_1-associated JJL53_24010 PF01609 Transposase DDE domain JJL53_24020 PF00563 EAL domain JJL53_24020 PF00990 Diguanylate cyclase, GGDEF domain JJL53_24020 PF03707 Bacterial signalling protein N terminal repeat JJL53_24025 PF00483 Nucleotidyl transferase JJL53_24040 PF13808 DDE_Tnp_1-associated JJL53_24040 PF01609 Transposase DDE domain JJL53_24050 PF07282 Putative transposase DNA-binding domain JJL53_24050 PF01385 Probable transposase JJL53_24050 PF12323 Helix-turn-helix domain JJL53_24105 PF01797 Transposase IS200 like JJL53_24110 PF12323 Helix-turn-helix domain JJL53_24110 PF07282 Putative transposase DNA-binding domain JJL53_24110 PF01385 Probable transposase JJL53_24135 PF01385 Probable transposase JJL53_24135 PF12323 Helix-turn-helix domain JJL53_24135 PF07282 Putative transposase DNA-binding domain JJL53_24140 PF10502 Signal peptidase, peptidase S26 JJL53_24150 PF06834 TraU protein JJL53_24155 PF06986 Type-1V conjugative transfer system mating pair stabilisation JJL53_24205 PF09588 YqaJ-like viral recombinase domain JJL53_24215 PF00239 Resolvase, N terminal domain JJL53_24215 PF02796 Helix-turn-helix domain of resolvase JJL53_24235 PF04002 RadC-like JAB domain JJL53_24245 PF08774 VRR-NUC domain JJL53_24245 PF04851 Type III restriction enzyme, res subunit JJL53_24260 PF01555 DNA methylase JJL53_24260 PF18273 Type III R-M EcoP15I C-terminal domain JJL53_24285 PF00293 NUDIX domain JJL53_24330 PF13737 Transposase DDE domain JJL53_24360 PF12323 Helix-turn-helix domain JJL53_24360 PF01385 Probable transposase JJL53_24360 PF07282 Putative transposase DNA-binding domain JJL53_24370 PF07282 Putative transposase DNA-binding domain JJL53_24370 PF01385 Probable transposase JJL53_24370 PF12323 Helix-turn-helix domain JJL53_24405 PF18766 SWI2/SNF2 ATPase JJL53_24405 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) JJL53_24405 PF12008 Type I restriction and modification enzyme - subunit R C terminal JJL53_24415 PF01420 Type I restriction modification DNA specificity domain JJL53_24420 PF17761 DUF1016 N-terminal domain JJL53_24420 PF06250 YhcG PDDEXK nuclease domain JJL53_24425 PF12161 HsdM N-terminal domain JJL53_24425 PF02384 N-6 DNA Methylase JJL53_24455 PF01385 Probable transposase JJL53_24455 PF12323 Helix-turn-helix domain JJL53_24455 PF07282 Putative transposase DNA-binding domain JJL53_24475 PF00816 H-NS histone family JJL53_24480 PF01609 Transposase DDE domain JJL53_24480 PF13808 DDE_Tnp_1-associated JJL53_24485 PF01609 Transposase DDE domain JJL53_24485 PF05598 Transposase domain (DUF772) JJL53_24490 PF00384 Molybdopterin oxidoreductase JJL53_24490 PF01568 Molydopterin dinucleotide binding domain JJL53_24490 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JJL53_24495 PF13247 4Fe-4S dicluster domain JJL53_24495 PF12800 4Fe-4S binding domain JJL53_24500 PF04976 DMSO reductase anchor subunit (DmsC) JJL53_24505 PF03453 MoeA N-terminal region (domain I and II) JJL53_24505 PF00994 Probable molybdopterin binding domain JJL53_24505 PF03454 MoeA C-terminal region (domain IV) JJL53_24510 PF00899 ThiF family JJL53_24515 PF00005 ABC transporter JJL53_24515 PF03459 TOBE domain JJL53_24520 PF00528 Binding-protein-dependent transport system inner membrane component JJL53_24525 PF02391 MoaE protein JJL53_24530 PF02597 ThiS family JJL53_24535 PF01967 MoaC family JJL53_24540 PF00994 Probable molybdopterin binding domain JJL53_24545 PF01609 Transposase DDE domain JJL53_24545 PF05598 Transposase domain (DUF772) JJL53_24550 PF03264 NapC/NirT cytochrome c family, N-terminal region JJL53_24555 PF00384 Molybdopterin oxidoreductase JJL53_24555 PF18364 Molybdopterin oxidoreductase N-terminal domain JJL53_24555 PF01568 Molydopterin dinucleotide binding domain JJL53_24560 PF02416 mttA/Hcf106 family JJL53_24565 PF02416 mttA/Hcf106 family JJL53_24570 PF00902 Sec-independent protein translocase protein (TatC) JJL53_24575 PF01609 Transposase DDE domain JJL53_24580 PF13808 DDE_Tnp_1-associated JJL53_24580 PF01609 Transposase DDE domain JJL53_24590 PF01043 SecA preprotein cross-linking domain JJL53_24590 PF07516 SecA Wing and Scaffold domain JJL53_24590 PF02810 SEC-C motif JJL53_24590 PF07517 SecA DEAD-like domain JJL53_24630 PF02522 Aminoglycoside 3-N-acetyltransferase JJL53_24640 PF13610 DDE domain JJL53_24645 PF01636 Phosphotransferase enzyme family JJL53_24660 PF13610 DDE domain JJL53_24670 PF00171 Aldehyde dehydrogenase family JJL53_24670 PF18327 Proline utilization A proline dehydrogenase N-terminal domain JJL53_24670 PF14850 DNA-binding domain of Proline dehydrogenase JJL53_24670 PF01619 Proline dehydrogenase JJL53_24675 PF13614 AAA domain JJL53_24735 PF18284 DNA methylase N-terminal domain JJL53_24735 PF00145 C-5 cytosine-specific DNA methylase JJL53_24740 PF03852 DNA mismatch endonuclease Vsr JJL53_24745 PF09217 Restriction endonuclease EcoRII, N-terminal JJL53_24745 PF09019 EcoRII C terminal JJL53_24755 PF04221 RelB antitoxin JJL53_24760 PF05016 ParE toxin of type II toxin-antitoxin system, parDE JJL53_24770 PF01609 Transposase DDE domain JJL53_24770 PF13808 DDE_Tnp_1-associated