locus-tag	class	description
JJL53_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JJL53_00010	COG0592	DNA-directed DNA polymerase activity
JJL53_00020	COG0187	DNA topoisomerase II activity
JJL53_00030	COG2378	regulation of single-species biofilm formation
JJL53_00040	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JJL53_00045	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_00050	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_00055	COG3977	Valine--pyruvate aminotransferase
JJL53_00070	COG2814	Major facilitator Superfamily
JJL53_00075	COG0745	RESPONSE REGULATOR receiver
JJL53_00080	COG2205	protein histidine kinase activity
JJL53_00100	COG1733	regulation of RNA biosynthetic process
JJL53_00105	COG2267	carboxylic ester hydrolase activity
JJL53_00115	COG0604	alcohol dehydrogenase
JJL53_00125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJL53_00140	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_00145	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_00150	COG1309	transcriptional regulator
JJL53_00180	COG0561	phosphatase activity
JJL53_00185	COG2267	carboxylic ester hydrolase activity
JJL53_00190	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JJL53_00195	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JJL53_00200	COG1758	RNA polymerase activity
JJL53_00210	COG0859	PFAM glycosyl transferase family 9
JJL53_00215	COG3642	lipopolysaccharide core region biosynthetic process
JJL53_00255	COG0589	response to stress
JJL53_00260	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJL53_00265	COG3706	GGDEF domain
JJL53_00270	COG1528	Iron-storage protein
JJL53_00275	COG2081	HI0933 family
JJL53_00280	COG2223	nitrite transmembrane transporter activity
JJL53_00290	COG3275	phosphorelay sensor kinase activity
JJL53_00295	COG3279	Response regulator of the LytR AlgR family
JJL53_00300	COG2223	nitrite transmembrane transporter activity
JJL53_00305	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JJL53_00310	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JJL53_00320	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JJL53_00350	COG0045	succinate-CoA ligase (ADP-forming) activity
JJL53_00350	COG1042	CoA-binding domain protein
JJL53_00350	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJL53_00360	COG0583	DNA-binding transcription factor activity
JJL53_00365	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JJL53_00370	COG0166	Belongs to the GPI family
JJL53_00380	COG0668	transmembrane transport
JJL53_00385	COG1309	transcriptional regulator
JJL53_00390	COG0756	dUTP diphosphatase activity
JJL53_00395	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JJL53_00400	COG2003	Belongs to the UPF0758 family
JJL53_00405	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JJL53_00410	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JJL53_00420	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JJL53_00425	COG2990	Protein conserved in bacteria
JJL53_00430	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JJL53_00435	COG0859	PFAM glycosyl transferase family 9
JJL53_00440	COG0463	Glycosyl transferase, family 2
JJL53_00445	COG0859	PFAM glycosyl transferase family 9
JJL53_00450	COG1519	Transferase
JJL53_00460	COG1561	YicC-like family, N-terminal region
JJL53_00465	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JJL53_00470	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JJL53_00480	COG0789	Transcriptional regulator
JJL53_00485	COG5001	Diguanylate cyclase
JJL53_00485	COG2203	Gaf domain
JJL53_00485	COG4251	negative regulation of phosphorylation
JJL53_00485	COG3706	GGDEF domain
JJL53_00490	COG3084	Protein conserved in bacteria
JJL53_00500	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JJL53_00505	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JJL53_00510	COG3639	organic phosphonate transmembrane transporter activity
JJL53_00515	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
JJL53_00520	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
JJL53_00530	COG1335	isochorismatase
JJL53_00540	COG1683	Conserved Protein
JJL53_00545	COG0204	Acyl-transferase
JJL53_00550	COG0204	Acyl-transferase
JJL53_00555	COG0606	chelatase, subunit chli
JJL53_00565	COG3978	acetolactate synthase activity
JJL53_00575	COG0129	dihydroxy-acid dehydratase activity
JJL53_00585	COG5433	transposase activity
JJL53_00590	COG3039	Transposase
JJL53_00600	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JJL53_00605	COG0254	rRNA binding
JJL53_00610	COG0702	epimerase
JJL53_00615	COG0281	malic enzyme
JJL53_00625	COG2205	protein histidine kinase activity
JJL53_00630	COG0745	RESPONSE REGULATOR receiver
JJL53_00635	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_00650	COG0366	Alpha amylase catalytic
JJL53_00665	COG0443	Heat shock 70 kDa protein
JJL53_00670	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJL53_00675	COG3045	CreA protein
JJL53_00700	COG0174	glutamine synthetase
JJL53_00720	COG3842	ATPase activity
JJL53_00725	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJL53_00730	COG1177	transmembrane transport
JJL53_00735	COG2258	MOSC domain
JJL53_00760	COG2050	protein possibly involved in aromatic compounds catabolism
JJL53_00765	COG0514	ATP-dependent DNA helicase (RecQ)
JJL53_00780	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
JJL53_00790	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JJL53_00795	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJL53_00800	COG2239	Acts as a magnesium transporter
JJL53_00805	COG1648	precorrin-2 dehydrogenase activity
JJL53_00805	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJL53_00810	COG2116	formate transmembrane transporter activity
JJL53_00820	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_00825	COG0842	Transport permease protein
JJL53_00830	COG0842	Transport permease protein
JJL53_00835	COG1131	(ABC) transporter
JJL53_00840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_00860	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JJL53_00865	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JJL53_00875	COG0018	arginyl-trna synthetase
JJL53_00885	COG1595	DNA-templated transcription, initiation
JJL53_00890	COG3806	Anti-sigma factor
JJL53_00895	COG1968	undecaprenyl-diphosphatase activity
JJL53_00900	COG0667	Aldo Keto reductase
JJL53_00905	COG2017	converts alpha-aldose to the beta-anomer
JJL53_00910	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JJL53_00920	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_00925	COG1609	Transcriptional regulator
JJL53_00930	COG3250	beta-galactosidase activity
JJL53_00945	COG4211	Belongs to the binding-protein-dependent transport system permease family
JJL53_00980	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JJL53_00985	COG1288	antiporter activity
JJL53_00990	COG1438	arginine binding
JJL53_00995	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
JJL53_01000	COG0540	Belongs to the ATCase OTCase family
JJL53_01015	COG0688	phosphatidylethanolamine metabolic process
JJL53_01030	COG3040	lipid binding
JJL53_01035	COG2207	Transcriptional regulator
JJL53_01040	COG1979	alcohol dehydrogenase
JJL53_01045	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
JJL53_01050	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
JJL53_01055	COG3681	Belongs to the UPF0597 family
JJL53_01065	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_01070	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_01075	COG0564	pseudouridine synthase activity
JJL53_01085	COG0542	response to heat
JJL53_01090	COG2502	aspartate--ammonia ligase
JJL53_01095	COG1522	sequence-specific DNA binding
JJL53_01115	COG5413	integral membrane protein
JJL53_01120	COG0517	IMP dehydrogenase activity
JJL53_01120	COG0516	GMP reductase activity
JJL53_01140	COG2205	protein histidine kinase activity
JJL53_01150	COG2204	response regulator
JJL53_01165	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
JJL53_01195	COG0243	molybdopterin cofactor binding
JJL53_01200	COG3005	denitrification pathway
JJL53_01205	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JJL53_01210	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_01215	COG0569	domain protein
JJL53_01220	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JJL53_01245	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JJL53_01260	COG0250	Participates in transcription elongation, termination and antitermination
JJL53_01265	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JJL53_01270	COG0081	regulation of translation
JJL53_01275	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JJL53_01280	COG0222	ribosome binding
JJL53_01285	COG0085	RNA polymerase activity
JJL53_01290	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JJL53_01295	COG2964	Protein conserved in bacteria
JJL53_01315	COG2168	tRNA wobble position uridine thiolation
JJL53_01320	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JJL53_01325	COG0049	tRNA binding
JJL53_01330	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JJL53_01335	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JJL53_01340	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JJL53_01380	COG1484	DNA-dependent DNA replication
JJL53_01390	COG5433	transposase activity
JJL53_01405	COG2252	PERMEase
JJL53_01410	COG2376	Dihydroxyacetone kinase
JJL53_01415	COG1461	Dihydroxyacetone kinase
JJL53_01430	COG3284	Transcriptional regulator
JJL53_01440	COG0628	permease
JJL53_01465	COG0753	catalase activity
JJL53_01470	COG0454	-acetyltransferase
JJL53_01470	COG0456	acetyltransferase
JJL53_01475	COG2207	Transcriptional regulator
JJL53_01490	COG2203	Gaf domain
JJL53_01490	COG2199	diguanylate cyclase activity
JJL53_01500	COG3842	ATPase activity
JJL53_01510	COG1176	ABC-type spermidine putrescine transport system, permease component I
JJL53_01535	COG0583	DNA-binding transcription factor activity
JJL53_01545	COG1741	Belongs to the pirin family
JJL53_01550	COG2259	Doxx family
JJL53_01555	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
JJL53_01560	COG1074	ATP-dependent DNA helicase activity
JJL53_01565	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JJL53_01570	COG3039	Transposase
JJL53_01580	COG0346	lactoylglutathione lyase activity
JJL53_01590	COG0004	ammonium transporteR
JJL53_01595	COG0347	Belongs to the P(II) protein family
JJL53_01600	COG3706	GGDEF domain
JJL53_01630	COG1278	Cold shock
JJL53_01650	COG2197	response regulator
JJL53_01655	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JJL53_01665	COG3047	cAMP biosynthetic process
JJL53_01690	COG1368	sulfuric ester hydrolase activity
JJL53_01720	COG4221	oxidoreductase activity
JJL53_01735	COG1979	alcohol dehydrogenase
JJL53_01750	COG2873	o-acetylhomoserine
JJL53_01780	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JJL53_01790	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JJL53_01795	COG2949	membrane
JJL53_01800	COG3291	Pkd domain containing protein
JJL53_01805	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_01810	COG1441	menaquinone biosynthetic process
JJL53_01815	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JJL53_01820	COG0596	Alpha beta hydrolase
JJL53_01825	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JJL53_01830	COG1169	isochorismate synthase
JJL53_01835	COG1575	Belongs to the MenA family. Type 1 subfamily
JJL53_01865	COG0513	Belongs to the DEAD box helicase family
JJL53_01870	COG5433	transposase activity
JJL53_01875	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_01890	COG1671	Belongs to the UPF0178 family
JJL53_01915	COG3722	fumarate hydratase activity
JJL53_01920	COG0246	Mannitol dehydrogenase
JJL53_01925	COG2213	PTS system mannitol-specific
JJL53_01925	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_01930	COG1484	DNA-dependent DNA replication
JJL53_01935	COG4584	PFAM Integrase catalytic
JJL53_01945	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
JJL53_01960	COG2771	luxR family
JJL53_02000	COG1560	Kdo2-lipid A biosynthetic process
JJL53_02005	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JJL53_02005	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
JJL53_02010	COG1538	Outer membrane efflux protein
JJL53_02015	COG0494	nUDIX hydrolase
JJL53_02020	COG3151	Protein conserved in bacteria
JJL53_02030	COG3150	esterase
JJL53_02035	COG1051	belongs to the nudix hydrolase family
JJL53_02055	COG3039	Transposase
JJL53_02145	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_02165	COG0204	Acyl-transferase
JJL53_02170	COG1842	Phage shock protein A
JJL53_02185	COG2827	Endonuclease containing a URI domain
JJL53_02195	COG1573	uracil-dna glycosylase
JJL53_02205	COG0583	DNA-binding transcription factor activity
JJL53_02210	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JJL53_02215	COG1121	(ABC) transporter
JJL53_02220	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
JJL53_02250	COG0739	heme binding
JJL53_02260	COG3068	Protein conserved in bacteria
JJL53_02280	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JJL53_02290	COG1546	Belongs to the CinA family
JJL53_02295	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JJL53_02310	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JJL53_02315	COG0527	aspartate kinase activity
JJL53_02320	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JJL53_02355	COG1686	Belongs to the peptidase S11 family
JJL53_02360	COG0586	Pfam SNARE associated Golgi protein
JJL53_02365	COG1253	flavin adenine dinucleotide binding
JJL53_02375	COG2927	DNA polymerase III (CHI subunit)
JJL53_02380	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_02385	COG0795	lipopolysaccharide-transporting ATPase activity
JJL53_02390	COG0795	lipopolysaccharide-transporting ATPase activity
JJL53_02425	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_02445	COG0084	hydrolase, TatD family'
JJL53_02450	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_02460	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JJL53_02465	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JJL53_02470	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JJL53_02485	COG3064	Membrane
JJL53_02495	COG0560	Phosphoserine phosphatase
JJL53_02510	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JJL53_02520	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
JJL53_02525	COG0776	regulation of translation
JJL53_02540	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_02545	COG0735	belongs to the Fur family
JJL53_02565	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JJL53_02570	COG0513	Belongs to the DEAD box helicase family
JJL53_02575	COG3022	response to hydroperoxide
JJL53_02590	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JJL53_02595	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JJL53_02600	COG0762	integral membrane protein
JJL53_02605	COG1872	DUF167
JJL53_02625	COG3112	Uncharacterised protein family (UPF0231)
JJL53_02630	COG3835	regulator
JJL53_02635	COG2610	gluconate transmembrane transporter activity
JJL53_02640	COG1929	Belongs to the glycerate kinase type-1 family
JJL53_02655	COG0583	DNA-binding transcription factor activity
JJL53_02660	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JJL53_02675	COG0347	Belongs to the P(II) protein family
JJL53_02680	COG1840	ABC-type Fe3 transport system, periplasmic component
JJL53_02695	COG2837	iron assimilation
JJL53_02700	COG1438	arginine binding
JJL53_02705	COG1126	abc transporter atp-binding protein
JJL53_02710	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_02715	COG4215	(ABC) transporter
JJL53_02720	COG4160	amino acid transport
JJL53_02725	COG0039	L-malate dehydrogenase activity
JJL53_02730	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
JJL53_02735	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_02735	COG1017	nitric oxide dioxygenase activity
JJL53_02740	COG3385	transposase activity
JJL53_02750	COG4536	flavin adenine dinucleotide binding
JJL53_02755	COG4137	Cytochrome C assembly protein
JJL53_02760	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JJL53_02765	COG0228	four-way junction DNA binding
JJL53_02770	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JJL53_02775	COG0336	Belongs to the RNA methyltransferase TrmD family
JJL53_02780	COG0335	large ribosomal subunit rRNA binding
JJL53_02795	COG1051	belongs to the nudix hydrolase family
JJL53_02805	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JJL53_02810	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JJL53_02815	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JJL53_02825	COG0583	DNA-binding transcription factor activity
JJL53_02830	COG0640	Transcriptional regulator
JJL53_02835	COG0268	Binds directly to 16S ribosomal RNA
JJL53_02840	COG0728	peptidoglycan biosynthetic process
JJL53_02845	COG0196	riboflavin kinase activity
JJL53_02850	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JJL53_02855	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JJL53_02860	COG1047	Peptidyl-prolyl cis-trans
JJL53_02865	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JJL53_02885	COG5433	transposase activity
JJL53_02910	COG5433	transposase activity
JJL53_02925	COG3385	transposase activity
JJL53_02935	COG4584	PFAM Integrase catalytic
JJL53_02940	COG1484	DNA-dependent DNA replication
JJL53_02950	COG5433	transposase activity
JJL53_02955	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JJL53_02955	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_02970	COG1854	S-ribosylhomocysteine lyase activity
JJL53_02975	COG3706	GGDEF domain
JJL53_02980	COG0557	exoribonuclease II activity
JJL53_02985	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JJL53_02995	COG2153	protein acetylation
JJL53_03010	COG1914	H( )-stimulated, divalent metal cation uptake system
JJL53_03015	COG0360	Binds together with S18 to 16S ribosomal RNA
JJL53_03020	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JJL53_03025	COG0359	binds to the 23S rRNA
JJL53_03050	COG1064	alcohol dehydrogenase
JJL53_03055	COG1238	metal cluster binding
JJL53_03060	COG0612	Peptidase, M16
JJL53_03065	COG2918	glutathione biosynthetic process
JJL53_03070	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JJL53_03075	COG1027	Aspartate ammonia-lyase
JJL53_03080	COG3030	protein affecting phage T7 exclusion by the F plasmid
JJL53_03085	COG0534	Mate efflux family protein
JJL53_03090	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JJL53_03095	COG0459	protein refolding
JJL53_03115	COG0564	pseudouridine synthase activity
JJL53_03120	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_03155	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JJL53_03165	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
JJL53_03170	COG4208	sulfate ABC transporter
JJL53_03175	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JJL53_03180	COG0583	DNA-binding transcription factor activity
JJL53_03190	COG3397	chitin binding
JJL53_03195	COG0840	transmembrane signaling receptor activity
JJL53_03220	COG1328	CTP reductase activity
JJL53_03225	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JJL53_03240	COG1448	Aminotransferase
JJL53_03250	COG2194	sulfuric ester hydrolase activity
JJL53_03270	COG1215	transferase activity, transferring glycosyl groups
JJL53_03280	COG0457	Tetratricopeptide repeat
JJL53_03280	COG3118	belongs to the thioredoxin family
JJL53_03300	COG3385	transposase activity
JJL53_03320	COG0513	Belongs to the DEAD box helicase family
JJL53_03360	COG4166	transmembrane transport
JJL53_03375	COG1024	Enoyl-CoA hydratase
JJL53_03390	COG4221	oxidoreductase activity
JJL53_03395	COG0442	prolyl-tRNA aminoacylation
JJL53_03400	COG0632	four-way junction helicase activity
JJL53_03405	COG2255	four-way junction helicase activity
JJL53_03410	COG1271	oxidase subunit
JJL53_03415	COG1294	oxidase, subunit
JJL53_03420	COG4890	Cyd operon protein YbgT
JJL53_03425	COG3790	cyd operon protein YbgE
JJL53_03430	COG0824	Thioesterase
JJL53_03435	COG0811	peptide transport
JJL53_03450	COG0823	Involved in the tonB-independent uptake of proteins
JJL53_03455	COG2885	chlorophyll binding
JJL53_03460	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
JJL53_03535	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JJL53_03545	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_03550	COG1640	4-alpha-glucanotransferase
JJL53_03555	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
JJL53_03580	COG2130	NADP-dependent
JJL53_03585	COG1846	Transcriptional regulator
JJL53_03615	COG0561	phosphatase activity
JJL53_03630	COG0733	neurotransmitter:sodium symporter activity
JJL53_03635	COG0733	neurotransmitter:sodium symporter activity
JJL53_03650	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJL53_03665	COG1794	racemase activity, acting on amino acids and derivatives
JJL53_03675	COG1022	Amp-dependent synthetase and ligase
JJL53_03685	COG0456	acetyltransferase
JJL53_03700	COG2425	protein containing a von Willebrand factor type A (vWA) domain
JJL53_03705	COG3300	MHYT domain
JJL53_03705	COG5001	Diguanylate cyclase
JJL53_03715	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
JJL53_03725	COG1902	pentaerythritol trinitrate reductase activity
JJL53_03745	COG2957	Belongs to the agmatine deiminase family
JJL53_03750	COG0154	amidase activity
JJL53_03795	COG0513	Belongs to the DEAD box helicase family
JJL53_03800	COG3706	GGDEF domain
JJL53_03810	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
JJL53_03875	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JJL53_03880	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
JJL53_03885	COG1178	ABC-type Fe3 transport system permease component
JJL53_03890	COG4143	(ABC) transporter
JJL53_03905	COG0066	3-isopropylmalate dehydratase activity
JJL53_03910	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JJL53_03915	COG0473	3-isopropylmalate dehydrogenase activity
JJL53_03920	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JJL53_03930	COG0671	phosphoesterase, PA-phosphatase related
JJL53_03935	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JJL53_03945	COG0028	Belongs to the TPP enzyme family
JJL53_03950	COG0440	acetolactate synthase activity
JJL53_03955	COG0857	belongs to the CobB CobQ family
JJL53_03955	COG0280	phosphate acetyltransferase
JJL53_03960	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JJL53_03970	COG3013	Belongs to the UPF0304 family
JJL53_03975	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JJL53_03980	COG2716	regulation of RNA biosynthetic process
JJL53_03985	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJL53_03990	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
JJL53_03995	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JJL53_04035	COG5002	protein histidine kinase activity
JJL53_04035	COG0784	Response regulator, receiver
JJL53_04035	COG2198	Histidine kinase
JJL53_04040	COG0232	Belongs to the dGTPase family. Type 2 subfamily
JJL53_04050	COG5001	Diguanylate cyclase
JJL53_04050	COG3300	MHYT domain
JJL53_04095	COG0840	transmembrane signaling receptor activity
JJL53_04110	COG1464	Belongs to the NlpA lipoprotein family
JJL53_04115	COG2011	ABC-type metal ion transport system permease component
JJL53_04120	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JJL53_04140	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
JJL53_04140	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
JJL53_04145	COG0802	atpase or kinase
JJL53_04155	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JJL53_04160	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JJL53_04165	COG1923	regulation of RNA biosynthetic process
JJL53_04170	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JJL53_04175	COG0330	HflC and HflK could
JJL53_04180	COG0330	HflC and HflK could
JJL53_04185	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
JJL53_04190	COG0142	geranyltranstransferase activity
JJL53_04195	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JJL53_04200	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JJL53_04205	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JJL53_04210	COG3314	Sporulation integral membrane protein YlbJ
JJL53_04215	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JJL53_04220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JJL53_04230	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JJL53_04235	COG2967	ApaG domain
JJL53_04240	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JJL53_04245	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
JJL53_04255	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
JJL53_04260	COG3178	'Phosphotransferase
JJL53_04265	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JJL53_04270	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JJL53_04280	COG2252	PERMEase
JJL53_04290	COG0488	(ABC) transporter
JJL53_04295	COG0582	viral genome integration into host DNA
JJL53_04335	COG2974	May be involved in recombination
JJL53_04370	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_04430	COG0305	Participates in initiation and elongation during chromosome replication
JJL53_04455	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JJL53_04615	COG0741	lytic transglycosylase activity
JJL53_04620	COG0463	Glycosyl transferase, family 2
JJL53_04630	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JJL53_04655	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_04665	COG3721	Heme iron utilization protein
JJL53_04670	COG0748	coenzyme F420 binding
JJL53_04705	COG2814	Major facilitator Superfamily
JJL53_04710	COG2205	protein histidine kinase activity
JJL53_04750	COG1765	OsmC-like protein
JJL53_04765	COG3954	Phosphoribulokinase
JJL53_04770	COG3089	Belongs to the UPF0270 family
JJL53_04780	COG0429	hydrolase of the alpha beta-hydrolase fold
JJL53_04785	COG0784	Response regulator, receiver
JJL53_04785	COG0835	chemotaxis
JJL53_04795	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
JJL53_04800	COG1047	Peptidyl-prolyl cis-trans
JJL53_04815	COG0545	Peptidyl-prolyl cis-trans isomerase
JJL53_04865	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JJL53_04875	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JJL53_04875	COG0506	proline dehydrogenase activity
JJL53_04875	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
JJL53_04885	COG0114	fumarate hydratase activity
JJL53_04925	COG2199	diguanylate cyclase activity
JJL53_04925	COG2200	EAL domain
JJL53_04925	COG2203	Gaf domain
JJL53_04950	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJL53_04960	COG1280	lysine exporter protein (LysE YggA)
JJL53_04970	COG0826	peptidase U32
JJL53_04980	COG3813	Protein conserved in bacteria
JJL53_05000	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JJL53_05025	COG0300	oxidoreductase activity
JJL53_05045	COG2610	gluconate transmembrane transporter activity
JJL53_05050	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJL53_05055	COG3622	Belongs to the hyi family
JJL53_05060	COG0235	Class ii aldolase
JJL53_05065	COG3395	kinase activity
JJL53_05070	COG2084	Dehydrogenase
JJL53_05075	COG1349	DNA-binding transcription factor activity
JJL53_05085	COG2133	pyrroloquinoline quinone binding
JJL53_05100	COG1609	Transcriptional regulator
JJL53_05120	COG1175	transmembrane transport
JJL53_05135	COG3940	Belongs to the glycosyl hydrolase 43 family
JJL53_05140	COG4580	involved in the transport of maltose and maltodextrins
JJL53_05155	COG4580	involved in the transport of maltose and maltodextrins
JJL53_05180	COG1605	Chorismate mutase
JJL53_05180	COG0077	Prephenate dehydratase
JJL53_05205	COG3272	Protein of unknown function (DUF1722)
JJL53_05210	COG0789	Transcriptional regulator
JJL53_05215	COG0415	Belongs to the DNA photolyase family
JJL53_05225	COG0300	oxidoreductase activity
JJL53_05240	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JJL53_05265	COG0783	Belongs to the Dps family
JJL53_05270	COG1151	hydroxylamine reductase activity
JJL53_05275	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_05280	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_05295	COG3039	Transposase
JJL53_05365	COG2003	Belongs to the UPF0758 family
JJL53_05400	COG3311	Transcriptional regulator
JJL53_05440	COG3039	Transposase
JJL53_05455	COG5433	transposase activity
JJL53_05465	COG3385	transposase activity
JJL53_05495	COG0582	viral genome integration into host DNA
JJL53_05510	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_05520	COG0798	PFAM Bile acid sodium symporter
JJL53_05530	COG1393	Belongs to the ArsC family
JJL53_05555	COG0659	secondary active sulfate transmembrane transporter activity
JJL53_05560	COG2771	luxR family
JJL53_05610	COG4584	PFAM Integrase catalytic
JJL53_05615	COG1484	DNA-dependent DNA replication
JJL53_05635	COG1666	GTP binding
JJL53_05640	COG3248	Nucleoside-binding outer membrane protein
JJL53_05645	COG2211	Major facilitator Superfamily
JJL53_05655	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JJL53_05665	COG2813	Specifically methylates the guanine in position
JJL53_05670	COG0271	Belongs to the BolA IbaG family
JJL53_05675	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_05680	COG1805	sodium ion transport
JJL53_05685	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_05690	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_05695	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_05700	COG2871	sodium ion transport
JJL53_05705	COG1477	protein flavinylation
JJL53_05720	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_05725	COG0840	transmembrane signaling receptor activity
JJL53_05730	COG0583	DNA-binding transcription factor activity
JJL53_05740	COG2363	Small membrane protein
JJL53_05745	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
JJL53_05755	COG0473	3-isopropylmalate dehydrogenase activity
JJL53_05760	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_05765	COG1611	Belongs to the LOG family
JJL53_05780	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JJL53_05780	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JJL53_05790	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
JJL53_05815	COG3098	single-species biofilm formation
JJL53_05820	COG0564	pseudouridine synthase activity
JJL53_05830	COG5433	transposase activity
JJL53_05835	COG4580	involved in the transport of maltose and maltodextrins
JJL53_05845	COG1263	PTS System
JJL53_05845	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_05855	COG2171	N-acyltransferase activity
JJL53_05860	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
JJL53_05865	COG0024	Methionine aminopeptidase
JJL53_05870	COG0052	Belongs to the universal ribosomal protein uS2 family
JJL53_05875	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JJL53_05880	COG0528	UMP kinase activity
JJL53_05885	COG0233	cytoplasmic translational termination
JJL53_05890	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JJL53_05895	COG0575	Belongs to the CDS family
JJL53_05900	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JJL53_05905	COG0750	zinc metalloprotease
JJL53_05920	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_05925	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJL53_05930	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_05935	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_05940	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JJL53_05950	COG0825	malonyl-CoA metabolic process
JJL53_05960	COG0583	DNA-binding transcription factor activity
JJL53_05965	COG0814	amino acid
JJL53_05970	COG0531	amino acid
JJL53_05980	COG0488	(ABC) transporter
JJL53_05990	COG3590	peptidase
JJL53_05995	COG0037	tRNA processing
JJL53_06000	COG3706	GGDEF domain
JJL53_06035	COG0366	Alpha amylase catalytic
JJL53_06055	COG0463	Glycosyl transferase, family 2
JJL53_06070	COG2989	Protein conserved in bacteria
JJL53_06075	COG3108	Peptidase M15
JJL53_06085	COG2860	membrane
JJL53_06095	COG1196	nuclear chromosome segregation
JJL53_06100	COG3115	cell septum assembly
JJL53_06105	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JJL53_06120	COG1328	CTP reductase activity
JJL53_06125	COG0602	queuosine metabolic process
JJL53_06150	COG1566	PFAM secretion protein HlyD family protein
JJL53_06165	COG0281	malic enzyme
JJL53_06170	COG3290	protein histidine kinase activity
JJL53_06180	COG0697	spore germination
JJL53_06195	COG3284	Transcriptional regulator
JJL53_06200	COG3706	GGDEF domain
JJL53_06205	COG0346	lactoylglutathione lyase activity
JJL53_06210	COG0745	RESPONSE REGULATOR receiver
JJL53_06215	COG5002	protein histidine kinase activity
JJL53_06235	COG1940	carbohydrate kinase activity
JJL53_06240	COG3142	Participates in the control of copper homeostasis
JJL53_06255	COG0545	Peptidyl-prolyl cis-trans isomerase
JJL53_06260	COG1131	(ABC) transporter
JJL53_06275	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_06280	COG4597	amino acid ABC transporter
JJL53_06285	COG0765	amino acid transport
JJL53_06290	COG1126	abc transporter atp-binding protein
JJL53_06300	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
JJL53_06305	COG0678	peroxiredoxin activity
JJL53_06315	COG0019	diaminopimelate decarboxylase activity
JJL53_06320	COG1115	amino acid carrier protein
JJL53_06325	COG0095	Lipoate-protein ligase
JJL53_06330	COG2233	PERMEase
JJL53_06345	COG0534	Mate efflux family protein
JJL53_06355	COG0281	malic enzyme
JJL53_06365	COG3328	transposase activity
JJL53_06390	COG3385	transposase activity
JJL53_06400	COG0733	neurotransmitter:sodium symporter activity
JJL53_06405	COG1752	Esterase of the alpha-beta hydrolase superfamily
JJL53_06410	COG3706	GGDEF domain
JJL53_06420	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_06425	COG1032	radical SAM domain protein
JJL53_06445	COG0673	inositol 2-dehydrogenase activity
JJL53_06450	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
JJL53_06455	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJL53_06460	COG0739	heme binding
JJL53_06460	COG0741	lytic transglycosylase activity
JJL53_06460	COG1196	nuclear chromosome segregation
JJL53_06485	COG0788	formyltetrahydrofolate deformylase activity
JJL53_06490	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JJL53_06500	COG3118	belongs to the thioredoxin family
JJL53_06510	COG0791	NLP P60 protein
JJL53_06515	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
JJL53_06530	COG1376	ErfK ybiS ycfS ynhG family protein
JJL53_06530	COG1388	LysM domain
JJL53_06550	COG0348	domain, Protein
JJL53_06550	COG3901	Regulator of nitric oxide reductase transcription
JJL53_06555	COG4263	nitrous-oxide reductase activity
JJL53_06580	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JJL53_06590	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_06640	COG0784	Response regulator, receiver
JJL53_06640	COG2205	protein histidine kinase activity
JJL53_06660	COG5433	transposase activity
JJL53_06670	COG2205	protein histidine kinase activity
JJL53_06670	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_06675	COG3384	dioxygenase
JJL53_06685	COG1283	sodium-dependent phosphate transmembrane transporter activity
JJL53_06695	COG0531	amino acid
JJL53_06700	COG0531	amino acid
JJL53_06720	COG1917	Cupin 2, conserved barrel domain protein
JJL53_06720	COG1396	sequence-specific DNA binding
JJL53_06725	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_06745	COG2974	May be involved in recombination
JJL53_06750	COG0456	acetyltransferase
JJL53_06755	COG0420	3'-5' exonuclease activity
JJL53_06765	COG3038	cytochrome b561
JJL53_06770	COG2190	(PTS) system
JJL53_06780	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_06785	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JJL53_06805	COG1720	tRNA m6t6A37 methyltransferase activity
JJL53_06825	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JJL53_06830	COG4988	ABC transporter
JJL53_06845	COG0745	RESPONSE REGULATOR receiver
JJL53_06855	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JJL53_06890	COG3153	acetyltransferase
JJL53_06925	COG3385	transposase activity
JJL53_06935	COG1598	PFAM Uncharacterised protein family UPF0150
JJL53_06960	COG0582	viral genome integration into host DNA
JJL53_06970	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JJL53_06975	COG2867	negative regulation of translational initiation
JJL53_06980	COG2914	Belongs to the UPF0125 (RnfH) family
JJL53_06985	COG0702	epimerase
JJL53_06990	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_07005	COG0564	pseudouridine synthase activity
JJL53_07035	COG1280	lysine exporter protein (LysE YggA)
JJL53_07050	COG3263	regulation of cellular component size
JJL53_07060	COG1876	peptidase activity
JJL53_07065	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JJL53_07070	COG1393	Belongs to the ArsC family
JJL53_07075	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_07095	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_07120	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JJL53_07125	COG0017	Asparaginyl-tRNA synthetase
JJL53_07145	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JJL53_07150	COG0156	8-amino-7-oxononanoate synthase activity
JJL53_07155	COG1073	alpha beta
JJL53_07155	COG2226	methyltransferase
JJL53_07160	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
JJL53_07165	COG0501	Belongs to the peptidase M48B family
JJL53_07170	COG3217	Mosc domain protein beta barrel domain protein
JJL53_07170	COG0633	Ferredoxin
JJL53_07170	COG3217	Mosc domain protein beta barrel domain protein
JJL53_07170	COG0633	Ferredoxin
JJL53_07180	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JJL53_07180	COG1013	pyruvate-flavodoxin oxidoreductase activity
JJL53_07180	COG0674	pyruvate-flavodoxin oxidoreductase activity
JJL53_07180	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
JJL53_07185	COG2841	Protein conserved in bacteria
JJL53_07195	COG0534	Mate efflux family protein
JJL53_07230	COG1309	transcriptional regulator
JJL53_07245	COG0791	NLP P60 protein
JJL53_07250	COG0583	DNA-binding transcription factor activity
JJL53_07270	COG0500	methyltransferase
JJL53_07275	COG4106	trans-aconitate 2-methyltransferase activity
JJL53_07280	COG1801	Protein of unknown function DUF72
JJL53_07285	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
JJL53_07290	COG0217	transcriptional regulatory protein
JJL53_07300	COG1940	carbohydrate kinase activity
JJL53_07300	COG1846	Transcriptional regulator
JJL53_07305	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JJL53_07310	COG0363	glucosamine-6-phosphate deaminase activity
JJL53_07315	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_07315	COG1263	PTS System
JJL53_07315	COG2190	(PTS) system
JJL53_07325	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_07330	COG0735	belongs to the Fur family
JJL53_07340	COG0716	FMN binding
JJL53_07355	COG0596	Alpha beta hydrolase
JJL53_07360	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
JJL53_07365	COG0033	Phosphoglucomutase
JJL53_07375	COG1846	Transcriptional regulator
JJL53_07380	COG2951	lytic endotransglycosylase activity
JJL53_07385	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JJL53_07390	COG4136	ATPase activity
JJL53_07400	COG4134	Bacterial extracellular solute-binding protein
JJL53_07410	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_07420	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JJL53_07430	COG0729	surface antigen
JJL53_07455	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JJL53_07465	COG0741	lytic transglycosylase activity
JJL53_07480	COG1607	acyl-coa hydrolase
JJL53_07495	COG0741	lytic transglycosylase activity
JJL53_07495	COG1388	LysM domain
JJL53_07500	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_07505	COG2226	methyltransferase
JJL53_07510	COG0328	RNA-DNA hybrid ribonuclease activity
JJL53_07515	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_07525	COG3437	response regulator, receiver
JJL53_07525	COG0784	Response regulator, receiver
JJL53_07530	COG1960	acyl-CoA dehydrogenase activity
JJL53_07535	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JJL53_07540	COG0121	glutamine amidotransferase
JJL53_07550	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JJL53_07570	COG0784	Response regulator, receiver
JJL53_07570	COG2205	protein histidine kinase activity
JJL53_07585	COG2197	response regulator
JJL53_07590	COG3850	Histidine kinase
JJL53_07595	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JJL53_07600	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JJL53_07610	COG0243	molybdopterin cofactor binding
JJL53_07615	COG0437	4 iron, 4 sulfur cluster binding
JJL53_07620	COG0348	domain, Protein
JJL53_07630	COG3005	denitrification pathway
JJL53_07635	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_07640	COG0315	cyclic pyranopterin monophosphate synthase activity
JJL53_07645	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JJL53_07650	COG0314	molybdopterin synthase activity
JJL53_07665	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJL53_07670	COG0596	Alpha beta hydrolase
JJL53_07675	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_07685	COG0302	gtp cyclohydrolase
JJL53_07690	COG0840	transmembrane signaling receptor activity
JJL53_07700	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JJL53_07710	COG0583	DNA-binding transcription factor activity
JJL53_07735	COG0675	Transposase, IS605 OrfB family
JJL53_07750	COG2195	Cleaves the N-terminal amino acid of tripeptides
JJL53_07760	COG1166	arginine decarboxylase activity
JJL53_07785	COG1061	Type III restriction enzyme res subunit
JJL53_07805	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JJL53_07810	COG1187	pseudouridine synthase activity
JJL53_07815	COG2807	transmembrane transport
JJL53_07850	COG2979	Protein of unknown function (DUF533)
JJL53_07875	COG1595	DNA-templated transcription, initiation
JJL53_07900	COG3385	transposase activity
JJL53_07910	COG1294	oxidase, subunit
JJL53_07920	COG2814	Major facilitator Superfamily
JJL53_07925	COG0656	L-ascorbic acid biosynthetic process
JJL53_07950	COG0583	DNA-binding transcription factor activity
JJL53_07955	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JJL53_07960	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JJL53_07970	COG5433	transposase activity
JJL53_07980	COG1349	DNA-binding transcription factor activity
JJL53_07990	COG0584	glycerophosphoryl diester phosphodiesterase
JJL53_07995	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_08000	COG1605	Chorismate mutase
JJL53_08000	COG0287	Prephenate dehydrogenase
JJL53_08010	COG3085	chromosome segregation
JJL53_08015	COG4574	serine-type endopeptidase inhibitor activity
JJL53_08035	COG1770	oligopeptidase
JJL53_08040	COG4206	TonB-dependent receptor
JJL53_08045	COG3083	sulfuric ester hydrolase activity
JJL53_08050	COG3082	Protein of unknown function (DUF1414)
JJL53_08055	COG3081	Nucleoid-associated protein
JJL53_08060	COG3385	transposase activity
JJL53_08070	COG2182	Extracellular solute-binding protein
JJL53_08075	COG1175	transmembrane transport
JJL53_08080	COG3833	ABC-type maltose transport systems, permease component
JJL53_08085	COG3842	ATPase activity
JJL53_08110	COG0675	Transposase, IS605 OrfB family
JJL53_08130	COG4783	chaperone-mediated protein folding
JJL53_08140	COG1393	Belongs to the ArsC family
JJL53_08155	COG0675	Transposase, IS605 OrfB family
JJL53_08160	COG3385	transposase activity
JJL53_08165	COG2431	L-lysine efflux transmembrane transporter activity
JJL53_08175	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_08185	COG4160	amino acid transport
JJL53_08235	COG1091	dTDP-4-dehydrorhamnose reductase activity
JJL53_08245	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JJL53_08255	COG1216	Glycosyl transferase, family 2
JJL53_08255	COG0438	transferase activity, transferring glycosyl groups
JJL53_08265	COG3385	transposase activity
JJL53_08275	COG3385	transposase activity
JJL53_08280	COG3385	transposase activity
JJL53_08345	COG5433	transposase activity
JJL53_08365	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JJL53_08375	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_08390	COG2373	Large extracellular alpha-helical protein
JJL53_08395	COG4953	penicillin-binding protein 1C
JJL53_08405	COG0301	tRNA thio-modification
JJL53_08405	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_08420	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JJL53_08450	COG5433	transposase activity
JJL53_08475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_08485	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JJL53_08500	COG0346	lactoylglutathione lyase activity
JJL53_08505	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JJL53_08510	COG4660	Part of a membrane complex involved in electron transport
JJL53_08515	COG4659	FMN binding
JJL53_08520	COG4658	electron transport chain
JJL53_08530	COG2878	Part of a membrane complex involved in electron transport
JJL53_08535	COG4657	Part of a membrane complex involved in electron transport
JJL53_08540	COG0697	spore germination
JJL53_08560	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JJL53_08570	COG0436	Aminotransferase
JJL53_08580	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
JJL53_08585	COG2027	D-alanyl-D-alanine carboxypeptidase
JJL53_08590	COG1061	Type III restriction enzyme res subunit
JJL53_08595	COG1566	PFAM secretion protein HlyD family protein
JJL53_08610	COG0675	Transposase, IS605 OrfB family
JJL53_08620	COG3264	Mechanosensitive ion channel
JJL53_08620	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JJL53_08625	COG1966	Carbon starvation protein
JJL53_08630	COG3279	Response regulator of the LytR AlgR family
JJL53_08635	COG3275	phosphorelay sensor kinase activity
JJL53_08645	COG1454	alcohol dehydrogenase
JJL53_08645	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_08650	COG2095	MarC family integral membrane protein
JJL53_08660	COG0601	transmembrane transport
JJL53_08665	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_08670	COG0444	Belongs to the ABC transporter superfamily
JJL53_08680	COG0861	Integral membrane protein TerC family
JJL53_08685	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JJL53_08695	COG1301	dicarboxylic acid transport
JJL53_08710	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JJL53_08725	COG0537	adenosine 5'-monophosphoramidase activity
JJL53_08770	COG0675	Transposase, IS605 OrfB family
JJL53_08775	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_08780	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_08790	COG2354	Protein conserved in bacteria
JJL53_08805	COG3150	esterase
JJL53_08810	COG1252	NADH dehydrogenase
JJL53_08820	COG0393	Putative heavy-metal-binding
JJL53_08840	COG1368	sulfuric ester hydrolase activity
JJL53_08850	COG0527	aspartate kinase activity
JJL53_08860	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JJL53_08860	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JJL53_08865	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JJL53_08880	COG2315	Protein conserved in bacteria
JJL53_08890	COG0583	DNA-binding transcription factor activity
JJL53_08895	COG1620	l-lactate permease
JJL53_08900	COG0247	lactate metabolic process
JJL53_08905	COG1139	Iron-sulfur cluster binding protein
JJL53_08920	COG3039	Transposase
JJL53_08930	COG0577	efflux transmembrane transporter activity
JJL53_08935	COG1136	(ABC) transporter
JJL53_08955	COG2814	Major facilitator Superfamily
JJL53_08980	COG0672	)-iron permease
JJL53_09015	COG2308	Evidence 4 Homologs of previously reported genes of
JJL53_09055	COG3385	transposase activity
JJL53_09105	COG0659	secondary active sulfate transmembrane transporter activity
JJL53_09120	COG3039	Transposase
JJL53_09125	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JJL53_09130	COG0326	Molecular chaperone. Has ATPase activity
JJL53_09135	COG0563	adenylate kinase activity
JJL53_09140	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JJL53_09150	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_09170	COG5001	Diguanylate cyclase
JJL53_09170	COG3300	MHYT domain
JJL53_09175	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JJL53_09195	COG1021	2,3-dihydroxybenzoate-AMP ligase
JJL53_09230	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JJL53_09235	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_09245	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JJL53_09250	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_09260	COG1120	ATPase activity
JJL53_09265	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_09270	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_09275	COG4771	TonB-dependent receptor
JJL53_09300	COG2440	electron transfer flavoprotein-ubiquinone oxidoreductase
JJL53_09300	COG0644	oxidoreductase
JJL53_09320	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JJL53_09325	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JJL53_09330	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_09335	COG0861	Integral membrane protein TerC family
JJL53_09350	COG1022	Amp-dependent synthetase and ligase
JJL53_09355	COG0295	cytidine deaminase activity
JJL53_09360	COG1346	cytolysis
JJL53_09365	COG1380	Effector of murein hydrolase LrgA
JJL53_09370	COG3345	alpha-galactosidase
JJL53_09380	COG2925	Exonuclease
JJL53_09395	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JJL53_09395	COG0392	lysyltransferase activity
JJL53_09405	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_09410	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_09415	COG0436	Aminotransferase
JJL53_09420	COG0583	DNA-binding transcription factor activity
JJL53_09425	COG2160	L-arabinose isomerase activity
JJL53_09435	COG1069	ribulokinase activity
JJL53_09440	COG1879	ABC-type sugar transport system periplasmic component
JJL53_09445	COG1129	ABC transporter
JJL53_09460	COG3366	ferrous iron transmembrane transporter activity
JJL53_09465	COG0700	Nucleoside recognition
JJL53_09470	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JJL53_09495	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JJL53_09500	COG0254	rRNA binding
JJL53_09515	COG1451	nucleotide metabolic process
JJL53_09530	COG3069	C4-dicarboxylate transmembrane transporter activity
JJL53_09540	COG5433	transposase activity
JJL53_09555	COG4584	PFAM Integrase catalytic
JJL53_09560	COG1484	DNA-dependent DNA replication
JJL53_09580	COG5433	transposase activity
JJL53_09595	COG4584	PFAM Integrase catalytic
JJL53_09600	COG1484	DNA-dependent DNA replication
JJL53_09620	COG5433	transposase activity
JJL53_09640	COG5433	transposase activity
JJL53_09650	COG3385	transposase activity
JJL53_09655	COG5433	transposase activity
JJL53_09680	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
JJL53_09690	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
JJL53_09700	COG0724	RNA recognition motif
JJL53_09705	COG4989	oxidoreductase activity
JJL53_09730	COG3437	response regulator, receiver
JJL53_09735	COG0583	DNA-binding transcription factor activity
JJL53_09745	COG5001	Diguanylate cyclase
JJL53_09745	COG3300	MHYT domain
JJL53_09750	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
JJL53_09755	COG0778	Nitroreductase
JJL53_09780	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JJL53_09785	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JJL53_09790	COG0539	negative regulation of cytoplasmic translation
JJL53_09795	COG0776	regulation of translation
JJL53_09805	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
JJL53_09825	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JJL53_09830	COG0602	queuosine metabolic process
JJL53_09835	COG3530	Putative quorum-sensing-regulated virulence factor
JJL53_09840	COG2096	Adenosyltransferase
JJL53_09850	COG5433	transposase activity
JJL53_09855	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_09860	COG1757	Na H antiporter
JJL53_09865	COG1435	thymidine kinase activity
JJL53_09910	COG3385	transposase activity
JJL53_09950	COG2226	methyltransferase
JJL53_09970	COG3550	peptidyl-serine autophosphorylation
JJL53_09995	COG3385	transposase activity
JJL53_10080	COG5433	transposase activity
JJL53_10085	COG5433	transposase activity
JJL53_10095	COG3039	Transposase
JJL53_10120	COG0629	single-stranded DNA binding
JJL53_10125	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_10130	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJL53_10200	COG1104	cysteine desulfurase activity
JJL53_10210	COG5433	transposase activity
JJL53_10255	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JJL53_10260	COG0626	cystathionine gamma-synthase activity
JJL53_10270	COG2910	NAD(P)H-binding
JJL53_10275	COG5433	transposase activity
JJL53_10280	COG0583	DNA-binding transcription factor activity
JJL53_10290	COG2207	Transcriptional regulator
JJL53_10290	COG3708	Transcriptional regulator
JJL53_10295	COG4774	siderophore transport
JJL53_10315	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JJL53_10320	COG3620	sequence-specific DNA binding
JJL53_10320	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JJL53_10320	COG0617	tRNA 3'-terminal CCA addition
JJL53_10335	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_10340	COG3046	protein related to deoxyribodipyrimidine photolyase
JJL53_10355	COG4235	cytochrome complex assembly
JJL53_10355	COG3088	subunit of a heme lyase
JJL53_10360	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_10365	COG1138	Cytochrome C-type biogenesis protein
JJL53_10370	COG3301	Polysulphide reductase, NrfD
JJL53_10375	COG0437	4 iron, 4 sulfur cluster binding
JJL53_10380	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
JJL53_10395	COG0247	lactate metabolic process
JJL53_10400	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
JJL53_10405	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JJL53_10410	COG3012	SEC-C Motif Domain Protein
JJL53_10420	COG1940	carbohydrate kinase activity
JJL53_10420	COG1846	Transcriptional regulator
JJL53_10440	COG4565	transcriptional regulatory protein
JJL53_10460	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JJL53_10465	COG0569	domain protein
JJL53_10465	COG2985	domain, Protein
JJL53_10475	COG0556	nucleotide-excision repair
JJL53_10485	COG0586	Pfam SNARE associated Golgi protein
JJL53_10490	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JJL53_10495	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
JJL53_10505	COG2719	SpoVR family
JJL53_10510	COG2718	Belongs to the UPF0229 family
JJL53_10515	COG2766	serine protein kinase
JJL53_10520	COG0514	ATP-dependent DNA helicase (RecQ)
JJL53_10525	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
JJL53_10530	COG0814	amino acid
JJL53_10535	COG5433	transposase activity
JJL53_10545	COG5433	transposase activity
JJL53_10580	COG0058	SHG alpha-glucan phosphorylase activity
JJL53_10590	COG0471	metal ion transport
JJL53_10595	COG3118	belongs to the thioredoxin family
JJL53_10605	COG1132	(ABC) transporter
JJL53_10610	COG1132	(ABC) transporter
JJL53_10620	COG5433	transposase activity
JJL53_10635	COG2501	S4 domain
JJL53_10665	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
JJL53_10670	COG2329	Antibiotic biosynthesis monooxygenase
JJL53_10675	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JJL53_10680	COG0673	inositol 2-dehydrogenase activity
JJL53_10685	COG0583	DNA-binding transcription factor activity
JJL53_10695	COG1560	Kdo2-lipid A biosynthetic process
JJL53_10700	COG1560	Kdo2-lipid A biosynthetic process
JJL53_10720	COG0417	DNA replication proofreading
JJL53_10760	COG0307	riboflavin synthase, alpha
JJL53_10770	COG0675	Transposase, IS605 OrfB family
JJL53_10780	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_10785	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
JJL53_10790	COG0697	spore germination
JJL53_10795	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JJL53_10835	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JJL53_10840	COG3099	Belongs to the UPF0263 family
JJL53_10845	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
JJL53_10850	COG2894	cell division
JJL53_10855	COG0850	regulation of cytokinetic process
JJL53_10860	COG3100	YcgL domain-containing protein
JJL53_10865	COG2951	lytic endotransglycosylase activity
JJL53_10875	COG1760	l-serine dehydratase
JJL53_10880	COG1760	l-serine dehydratase
JJL53_10885	COG3123	guanosine phosphorylase activity
JJL53_10905	COG2067	long-chain fatty acid transport protein
JJL53_10915	COG3012	SEC-C Motif Domain Protein
JJL53_10955	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_10975	COG2433	Pfam Transposase IS66
JJL53_10990	COG2067	long-chain fatty acid transport protein
JJL53_10995	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JJL53_11000	COG2067	long-chain fatty acid transport protein
JJL53_11005	COG2067	long-chain fatty acid transport protein
JJL53_11025	COG2304	oxidoreductase activity
JJL53_11050	COG0714	Associated with various cellular activities
JJL53_11055	COG0183	Belongs to the thiolase family
JJL53_11060	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJL53_11060	COG1024	Enoyl-CoA hydratase
JJL53_11070	COG4681	YaeQ
JJL53_11145	COG3134	Outer membrane lipoprotein
JJL53_11150	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_11155	COG2378	regulation of single-species biofilm formation
JJL53_11165	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JJL53_11165	COG0140	phosphoribosyl-ATP diphosphatase activity
JJL53_11170	COG0107	imidazoleglycerol-phosphate synthase activity
JJL53_11175	COG2205	protein histidine kinase activity
JJL53_11175	COG2198	Histidine kinase
JJL53_11175	COG0784	Response regulator, receiver
JJL53_11185	COG3437	response regulator, receiver
JJL53_11190	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JJL53_11195	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JJL53_11205	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JJL53_11210	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JJL53_11215	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JJL53_11225	COG1199	ATP-dependent helicase activity
JJL53_11230	COG1214	PFAM Peptidase M22, glycoprotease
JJL53_11240	COG0596	Alpha beta hydrolase
JJL53_11245	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_11250	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
JJL53_11305	COG3547	Transposase (IS116 IS110 IS902 family)
JJL53_11320	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_11330	COG3385	transposase activity
JJL53_11345	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JJL53_11355	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JJL53_11360	COG1335	isochorismatase
JJL53_11375	COG3314	Sporulation integral membrane protein YlbJ
JJL53_11385	COG0517	IMP dehydrogenase activity
JJL53_11385	COG0617	tRNA 3'-terminal CCA addition
JJL53_11385	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JJL53_11390	COG1643	Atp-dependent helicase
JJL53_11400	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JJL53_11410	COG3437	response regulator, receiver
JJL53_11415	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_11420	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
JJL53_11425	COG0709	Synthesizes selenophosphate from selenide and ATP
JJL53_11435	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JJL53_11440	COG0840	transmembrane signaling receptor activity
JJL53_11445	COG1254	Belongs to the acylphosphatase family
JJL53_11455	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_11455	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_11460	COG0489	protein tyrosine kinase activity
JJL53_11465	COG0572	uridine kinase
JJL53_11470	COG0717	Belongs to the dCTP deaminase family
JJL53_11475	COG0306	phosphate transporter
JJL53_11480	COG4584	PFAM Integrase catalytic
JJL53_11500	COG0546	phosphoglycolate phosphatase activity
JJL53_11505	COG0424	maF-like protein
JJL53_11515	COG1399	metal-binding, possibly nucleic acid-binding protein
JJL53_11520	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JJL53_11525	COG0416	fatty acid biosynthetic process
JJL53_11530	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JJL53_11540	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_11545	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_11555	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JJL53_11560	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JJL53_11565	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JJL53_11570	COG0470	DNA polymerase III
JJL53_11575	COG0084	hydrolase, TatD family'
JJL53_11595	COG3008	intermembrane lipid transfer
JJL53_11600	COG2995	paraquat-inducible protein a
JJL53_11610	COG3141	response to X-ray
JJL53_11620	COG1067	ATP-dependent peptidase activity
JJL53_11625	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JJL53_11640	COG0488	(ABC) transporter
JJL53_11650	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JJL53_11650	COG0116	Belongs to the methyltransferase superfamily
JJL53_11660	COG0167	dihydroorotate dehydrogenase activity
JJL53_11665	COG2902	Dehydrogenase
JJL53_11675	COG0308	aminopeptidase N
JJL53_11685	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
JJL53_11690	COG1956	GAF domain-containing protein
JJL53_11700	COG3278	Belongs to the heme-copper respiratory oxidase family
JJL53_11715	COG2010	Cytochrome c
JJL53_11740	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJL53_11745	COG0589	response to stress
JJL53_11750	COG0037	tRNA processing
JJL53_11765	COG0625	glutathione transferase activity
JJL53_11770	COG1869	D-ribose catabolic process
JJL53_11775	COG1129	ABC transporter
JJL53_11780	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_11785	COG1879	ABC-type sugar transport system periplasmic component
JJL53_11790	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_11795	COG1609	Transcriptional regulator
JJL53_11800	COG5001	Diguanylate cyclase
JJL53_11800	COG3300	MHYT domain
JJL53_11825	COG0784	Response regulator, receiver
JJL53_11825	COG2205	protein histidine kinase activity
JJL53_11830	COG0776	regulation of translation
JJL53_11835	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_11835	COG0072	phenylalanine-tRNA ligase activity
JJL53_11840	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JJL53_11845	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JJL53_11850	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JJL53_11855	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JJL53_11860	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JJL53_11890	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJL53_11900	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JJL53_11910	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JJL53_11915	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
JJL53_11920	COG3313	Fe-S protein
JJL53_11925	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
JJL53_11925	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_11925	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_11930	COG1105	Belongs to the carbohydrate kinase PfkB family
JJL53_11935	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_11935	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_11940	COG1609	Transcriptional regulator
JJL53_11945	COG0814	amino acid
JJL53_11950	COG3788	relative of glutathione S-transferase, MAPEG superfamily
JJL53_11955	COG0513	Belongs to the DEAD box helicase family
JJL53_11965	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JJL53_11970	COG2890	protein-(glutamine-N5) methyltransferase activity
JJL53_11975	COG2840	Smr protein MutS2
JJL53_11985	COG0406	alpha-ribazole phosphatase activity
JJL53_12015	COG2824	Alkylphosphonate utilization operon protein PhnA
JJL53_12020	COG1280	lysine exporter protein (LysE YggA)
JJL53_12065	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
JJL53_12070	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
JJL53_12080	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
JJL53_12085	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JJL53_12095	COG0205	6-phosphofructokinase activity
JJL53_12100	COG1473	amidohydrolase
JJL53_12105	COG1011	Hydrolase
JJL53_12110	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_12165	COG3593	DNA synthesis involved in DNA repair
JJL53_12180	COG0583	DNA-binding transcription factor activity
JJL53_12185	COG0730	response to heat
JJL53_12190	COG3148	PFAM DTW domain containing protein
JJL53_12200	COG1181	Belongs to the D-alanine--D-alanine ligase family
JJL53_12210	COG0386	Belongs to the glutathione peroxidase family
JJL53_12215	COG0513	Belongs to the DEAD box helicase family
JJL53_12225	COG1742	UPF0060 membrane protein
JJL53_12260	COG1129	ABC transporter
JJL53_12265	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_12270	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_12290	COG5433	transposase activity
JJL53_12300	COG3385	transposase activity
JJL53_12330	COG2003	Belongs to the UPF0758 family
JJL53_12355	COG3385	transposase activity
JJL53_12380	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
JJL53_12400	COG0730	response to heat
JJL53_12410	COG3385	transposase activity
JJL53_12415	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_12425	COG1024	Enoyl-CoA hydratase
JJL53_12430	COG1024	Enoyl-CoA hydratase
JJL53_12435	COG1960	acyl-CoA dehydrogenase activity
JJL53_12445	COG1960	acyl-CoA dehydrogenase activity
JJL53_12450	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JJL53_12455	COG1024	Enoyl-CoA hydratase
JJL53_12480	COG1584	GPR1 FUN34 yaaH family protein
JJL53_12495	COG1115	amino acid carrier protein
JJL53_12500	COG1024	Enoyl-CoA hydratase
JJL53_12515	COG3162	membrane
JJL53_12520	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JJL53_12525	COG0488	(ABC) transporter
JJL53_12530	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JJL53_12535	COG0776	regulation of translation
JJL53_12540	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JJL53_12545	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JJL53_12550	COG0740	serine-type endopeptidase activity
JJL53_12555	COG0544	peptidyl-prolyl cis-trans isomerase activity
JJL53_12565	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
JJL53_12570	COG4591	ABC-type transport system involved in lipoprotein release permease component
JJL53_12575	COG1136	(ABC) transporter
JJL53_12580	COG4591	ABC-type transport system involved in lipoprotein release permease component
JJL53_12590	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JJL53_12595	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
JJL53_12600	COG4166	transmembrane transport
JJL53_12605	COG3385	transposase activity
JJL53_12610	COG0697	spore germination
JJL53_12620	COG2062	phosphohistidine phosphatase, SixA
JJL53_12650	COG3385	transposase activity
JJL53_12655	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJL53_12655	COG0519	Catalyzes the synthesis of GMP from XMP
JJL53_12660	COG0517	IMP dehydrogenase activity
JJL53_12660	COG0516	GMP reductase activity
JJL53_12670	COG0366	Alpha amylase catalytic
JJL53_12670	COG1874	Beta-galactosidase
JJL53_12680	COG1570	exodeoxyribonuclease VII activity
JJL53_12700	COG2885	chlorophyll binding
JJL53_12735	COG2154	pterin-4-alpha-carbinolamine dehydratase
JJL53_12745	COG3768	UPF0283 membrane protein
JJL53_12750	COG3106	COG3106 Predicted ATPase
JJL53_12765	COG1842	Phage shock protein A
JJL53_12770	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JJL53_12780	COG4168	peptide transport system, permease
JJL53_12785	COG4171	peptide transport system, permease
JJL53_12795	COG4172	Belongs to the ABC transporter superfamily
JJL53_12805	COG1609	Transcriptional regulator
JJL53_12810	COG1263	PTS System
JJL53_12810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_12815	COG2723	6-phospho-beta-galactosidase activity
JJL53_12820	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JJL53_12825	COG1286	toxin biosynthetic process
JJL53_12830	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JJL53_12835	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JJL53_12840	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JJL53_12845	COG0531	amino acid
JJL53_12845	COG1674	ftsk spoiiie
JJL53_12855	COG0686	Belongs to the AlaDH PNT family
JJL53_12860	COG0492	ferredoxin-NADP+ reductase activity
JJL53_12865	COG3706	GGDEF domain
JJL53_12870	COG3134	Outer membrane lipoprotein
JJL53_12875	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
JJL53_12880	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
JJL53_12885	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JJL53_12890	COG0542	response to heat
JJL53_12895	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
JJL53_12900	COG1278	Cold shock
JJL53_12905	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJL53_12925	COG1944	ATP diphosphatase activity
JJL53_12930	COG2116	formate transmembrane transporter activity
JJL53_12935	COG1882	Formate acetyltransferase
JJL53_12940	COG2983	Belongs to the UPF0260 family
JJL53_12955	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JJL53_12960	COG0045	succinate-CoA ligase (ADP-forming) activity
JJL53_12965	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJL53_12970	COG0567	Dehydrogenase, E1 component
JJL53_12980	COG1053	succinate dehydrogenase
JJL53_12985	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
JJL53_13010	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_13015	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
JJL53_13015	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_13045	COG5433	transposase activity
JJL53_13055	COG2026	Addiction module toxin, RelE StbE family
JJL53_13060	COG3077	Addiction module antitoxin, RelB DinJ family
JJL53_13120	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
JJL53_13135	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_13140	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_13145	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_13145	COG0649	NAD binding
JJL53_13160	COG1034	ATP synthesis coupled electron transport
JJL53_13165	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
JJL53_13170	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_13175	COG0839	Belongs to the complex I subunit 6 family
JJL53_13180	COG0713	ATP synthesis coupled electron transport
JJL53_13190	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JJL53_13195	COG1007	ATP synthesis coupled electron transport
JJL53_13200	COG0047	phosphoribosylformylglycinamidine synthase activity
JJL53_13200	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JJL53_13205	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
JJL53_13215	COG1160	GTP binding
JJL53_13220	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
JJL53_13225	COG2976	Protein conserved in bacteria
JJL53_13230	COG0124	histidyl-tRNA synthetase
JJL53_13250	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JJL53_13255	COG0105	UTP biosynthetic process
JJL53_13260	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JJL53_13270	COG0633	Ferredoxin
JJL53_13275	COG0443	Heat shock 70 kDa protein
JJL53_13280	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
JJL53_13290	COG0822	iron-sulfur transferase activity
JJL53_13295	COG1104	cysteine desulfurase activity
JJL53_13315	COG3154	lipid carrier protein
JJL53_13335	COG0826	peptidase U32
JJL53_13350	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_13355	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JJL53_13360	COG1862	Preprotein translocase
JJL53_13365	COG0343	queuine tRNA-ribosyltransferase activity
JJL53_13370	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JJL53_13375	COG0517	IMP dehydrogenase activity
JJL53_13385	COG3634	alkyl hydroperoxide reductase activity
JJL53_13425	COG3385	transposase activity
JJL53_13430	COG5433	transposase activity
JJL53_13455	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJL53_13455	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JJL53_13460	COG0509	glycine decarboxylation via glycine cleavage system
JJL53_13465	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JJL53_13470	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_13475	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_13495	COG2814	Major facilitator Superfamily
JJL53_13515	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_13520	COG0601	transmembrane transport
JJL53_13530	COG0625	glutathione transferase activity
JJL53_13545	COG0483	inositol monophosphate 1-phosphatase activity
JJL53_13575	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JJL53_13580	COG2056	Na+-H+ antiporter family
JJL53_13585	COG2814	Major facilitator Superfamily
JJL53_13590	COG0583	DNA-binding transcription factor activity
JJL53_13595	COG0513	Belongs to the DEAD box helicase family
JJL53_13600	COG2050	protein possibly involved in aromatic compounds catabolism
JJL53_13610	COG0247	lactate metabolic process
JJL53_13610	COG0277	FAD linked oxidase domain protein
JJL53_13620	COG1253	flavin adenine dinucleotide binding
JJL53_13625	COG1902	pentaerythritol trinitrate reductase activity
JJL53_13630	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JJL53_13635	COG0647	UMP catabolic process
JJL53_13645	COG0367	asparagine synthase
JJL53_13655	COG0625	glutathione transferase activity
JJL53_13665	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
JJL53_13680	COG0564	pseudouridine synthase activity
JJL53_13685	COG3706	GGDEF domain
JJL53_13695	COG0840	transmembrane signaling receptor activity
JJL53_13700	COG0318	PFAM AMP-dependent synthetase and ligase
JJL53_13730	COG4447	cellulose binding
JJL53_13755	COG2855	membrane
JJL53_13765	COG2814	Major facilitator Superfamily
JJL53_13770	COG3246	L-lysine catabolic process to acetate
JJL53_13775	COG2175	clavaminate synthase activity
JJL53_13785	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JJL53_13810	COG0670	Belongs to the BI1 family
JJL53_13815	COG1289	transmembrane transporter activity
JJL53_13820	COG2920	part of a sulfur-relay system
JJL53_13825	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
JJL53_13830	COG0285	dihydrofolate synthase activity
JJL53_13835	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JJL53_13840	COG0101	tRNA pseudouridine synthase activity
JJL53_13850	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JJL53_13855	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJL53_13860	COG0671	phosphoesterase, PA-phosphatase related
JJL53_13865	COG1464	Belongs to the NlpA lipoprotein family
JJL53_13885	COG1119	ATPase activity
JJL53_13890	COG0574	Belongs to the PEP-utilizing enzyme family
JJL53_13890	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JJL53_13895	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JJL53_13905	COG1113	amino acid transport
JJL53_13985	COG4584	PFAM Integrase catalytic
JJL53_13990	COG1484	DNA-dependent DNA replication
JJL53_14000	COG1242	4 iron, 4 sulfur cluster binding
JJL53_14005	COG3385	transposase activity
JJL53_14010	COG0069	glutamate synthase activity
JJL53_14010	COG0070	glutamate synthase
JJL53_14010	COG0067	glutamate synthase
JJL53_14015	COG0493	'glutamate synthase
JJL53_14020	COG1126	abc transporter atp-binding protein
JJL53_14030	COG3385	transposase activity
JJL53_14045	COG5433	transposase activity
JJL53_14065	COG4104	PAAR repeat-containing protein
JJL53_14075	COG0513	Belongs to the DEAD box helicase family
JJL53_14110	COG5433	transposase activity
JJL53_14120	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JJL53_14125	COG0505	Belongs to the CarA family
JJL53_14130	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JJL53_14140	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JJL53_14145	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
JJL53_14150	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JJL53_14155	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JJL53_14160	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_14165	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
JJL53_14215	COG2119	membrane
JJL53_14275	COG3039	Transposase
JJL53_14290	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JJL53_14300	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
JJL53_14310	COG0625	glutathione transferase activity
JJL53_14355	COG3436	PFAM IS66 Orf2 family protein
JJL53_14360	COG4372	Transposase
JJL53_14410	COG0322	excinuclease ABC activity
JJL53_14415	COG2197	response regulator
JJL53_14420	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
JJL53_14425	COG2835	tetraacyldisaccharide 4'-kinase activity
JJL53_14430	COG1663	tetraacyldisaccharide 4'-kinase activity
JJL53_14435	COG1132	(ABC) transporter
JJL53_14455	COG0433	COG0433 Predicted ATPase
JJL53_14460	COG1448	Aminotransferase
JJL53_14475	COG1199	ATP-dependent helicase activity
JJL53_14485	COG0123	including yeast histone deacetylase and acetoin utilization protein
JJL53_14490	COG0477	Major facilitator Superfamily
JJL53_14495	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JJL53_14520	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJL53_14525	COG2197	response regulator
JJL53_14535	COG2271	Major facilitator Superfamily
JJL53_14545	COG0675	Transposase, IS605 OrfB family
JJL53_14560	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JJL53_14565	COG0765	amino acid transport
JJL53_14570	COG1126	abc transporter atp-binding protein
JJL53_14585	COG3385	transposase activity
JJL53_14590	COG0531	amino acid
JJL53_14605	COG1253	flavin adenine dinucleotide binding
JJL53_14615	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JJL53_14620	COG0581	inorganic phosphate transmembrane transporter activity
JJL53_14625	COG0573	inorganic phosphate transmembrane transporter activity
JJL53_14645	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JJL53_14665	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JJL53_14670	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JJL53_14675	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JJL53_14690	COG3385	transposase activity
JJL53_14715	COG2716	regulation of RNA biosynthetic process
JJL53_14720	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
JJL53_14735	COG0675	Transposase, IS605 OrfB family
JJL53_14770	COG1705	Flagellar rod assembly protein muramidase FlgJ
JJL53_14770	COG3951	Flagellar rod assembly protein muramidase FlgJ
JJL53_14775	COG1706	bacterial-type flagellum-dependent cell motility
JJL53_14810	COG1815	bacterial-type flagellum-dependent cell motility
JJL53_14815	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JJL53_14820	COG0835	chemotaxis
JJL53_14820	COG0784	Response regulator, receiver
JJL53_14825	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
JJL53_14840	COG0622	Phosphoesterase
JJL53_14845	COG4166	transmembrane transport
JJL53_14855	COG1187	pseudouridine synthase activity
JJL53_14870	COG0697	spore germination
JJL53_14900	COG1278	Cold shock
JJL53_14930	COG2988	succinylglutamate desuccinylase activity
JJL53_14950	COG3132	Protein of unknown function, DUF480
JJL53_14965	COG3765	Modulates the polysaccharide chain length of enterobacterial common antigen (ECA)
JJL53_14970	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJL53_14995	COG1215	transferase activity, transferring glycosyl groups
JJL53_15040	COG1091	dTDP-4-dehydrorhamnose reductase activity
JJL53_15055	COG5433	transposase activity
JJL53_15095	COG3547	Transposase (IS116 IS110 IS902 family)
JJL53_15115	COG1737	Transcriptional regulator
JJL53_15120	COG0469	pyruvate kinase activity
JJL53_15130	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_15135	COG1960	acyl-CoA dehydrogenase activity
JJL53_15145	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JJL53_15175	COG3385	transposase activity
JJL53_15220	COG4372	Transposase
JJL53_15240	COG3657	addiction module killer protein
JJL53_15255	COG3328	transposase activity
JJL53_15270	COG1484	DNA-dependent DNA replication
JJL53_15275	COG4584	PFAM Integrase catalytic
JJL53_15315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_15320	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_15325	COG1309	transcriptional regulator
JJL53_15340	COG1946	Acyl-CoA thioesterase
JJL53_15350	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JJL53_15360	COG0009	L-threonylcarbamoyladenylate synthase
JJL53_15370	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JJL53_15375	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJL53_15375	COG0512	Glutamine amidotransferase of anthranilate synthase
JJL53_15380	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JJL53_15385	COG0135	phosphoribosylanthranilate isomerase activity
JJL53_15385	COG0134	indole-3-glycerol-phosphate synthase activity
JJL53_15390	COG0133	tryptophan synthase activity
JJL53_15395	COG0159	tryptophan synthase activity
JJL53_15425	COG5507	3-demethylubiquinone-9 3-methyltransferase
JJL53_15430	COG2814	Major facilitator Superfamily
JJL53_15435	COG0109	protoheme IX farnesyltransferase activity
JJL53_15440	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JJL53_15445	COG1845	cytochrome c oxidase, subunit III
JJL53_15465	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJL53_15470	COG5433	transposase activity
JJL53_15480	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_15485	COG0583	DNA-binding transcription factor activity
JJL53_15520	COG0071	Belongs to the small heat shock protein (HSP20) family
JJL53_15545	COG0708	Exodeoxyribonuclease III
JJL53_15555	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_15560	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JJL53_15575	COG0675	Transposase, IS605 OrfB family
JJL53_15590	COG0095	Lipoate-protein ligase
JJL53_15635	COG1285	pathogenesis
JJL53_15665	COG0484	heat shock protein binding
JJL53_15670	COG0443	Heat shock 70 kDa protein
JJL53_15675	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JJL53_15680	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JJL53_15685	COG3706	GGDEF domain
JJL53_15690	COG0497	DNA recombination
JJL53_15695	COG1227	inorganic diphosphatase activity
JJL53_15705	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_15710	COG0577	efflux transmembrane transporter activity
JJL53_15710	COG1136	(ABC) transporter
JJL53_15720	COG2375	cellular response to nickel ion
JJL53_15725	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
JJL53_15730	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_15735	COG0583	DNA-binding transcription factor activity
JJL53_15740	COG2610	gluconate transmembrane transporter activity
JJL53_15745	COG3048	D-serine ammonia-lyase activity
JJL53_15755	COG0538	isocitrate dehydrogenase activity
JJL53_15760	COG2207	Transcriptional regulator
JJL53_15765	COG1482	cell wall glycoprotein biosynthetic process
JJL53_15780	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_15785	COG4932	domain protein
JJL53_15785	COG5492	domain, Protein
JJL53_15805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_15805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_15805	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_15815	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JJL53_15840	COG0482	sulfurtransferase activity
JJL53_15845	COG2915	High frequency lysogenization protein hflD homolog
JJL53_15850	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JJL53_15855	COG2850	peptidyl-arginine hydroxylation
JJL53_15860	COG0469	pyruvate kinase activity
JJL53_15865	COG3264	Mechanosensitive ion channel
JJL53_15865	COG1196	nuclear chromosome segregation
JJL53_15880	COG1472	Belongs to the glycosyl hydrolase 3 family
JJL53_15885	COG1172	Belongs to the binding-protein-dependent transport system permease family
JJL53_15890	COG1129	ABC transporter
JJL53_15900	COG5433	transposase activity
JJL53_15935	COG0281	malic enzyme
JJL53_15940	COG0746	molybdenum cofactor guanylyltransferase activity
JJL53_15945	COG1763	Mo-molybdopterin cofactor biosynthetic process
JJL53_15950	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
JJL53_15995	COG1943	Transposase
JJL53_16015	COG1484	DNA-dependent DNA replication
JJL53_16020	COG4584	PFAM Integrase catalytic
JJL53_16035	COG4319	ketosteroid isomerase
JJL53_16040	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JJL53_16045	COG0083	homoserine kinase activity
JJL53_16055	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
JJL53_16060	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
JJL53_16075	COG0259	pyridoxamine-phosphate oxidase activity
JJL53_16080	COG3385	transposase activity
JJL53_16095	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JJL53_16095	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_16100	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
JJL53_16120	COG3088	subunit of a heme lyase
JJL53_16120	COG4235	cytochrome complex assembly
JJL53_16125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JJL53_16130	COG1138	Cytochrome C-type biogenesis protein
JJL53_16135	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
JJL53_16140	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_16145	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_16150	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JJL53_16165	COG0835	chemotaxis
JJL53_16175	COG1192	Involved in chromosome partitioning
JJL53_16180	COG1360	Flagellar Motor Protein
JJL53_16185	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JJL53_16190	COG2201	protein-glutamate methylesterase activity
JJL53_16195	COG2198	Histidine kinase
JJL53_16195	COG0643	Histidine kinase
JJL53_16195	COG0784	Response regulator, receiver
JJL53_16240	COG1309	transcriptional regulator
JJL53_16255	COG1136	(ABC) transporter
JJL53_16270	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JJL53_16285	COG3039	Transposase
JJL53_16335	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJL53_16345	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
JJL53_16345	COG1073	alpha beta
JJL53_16345	COG3064	Membrane
JJL53_16365	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_16370	COG0444	Belongs to the ABC transporter superfamily
JJL53_16375	COG4608	Belongs to the ABC transporter superfamily
JJL53_16385	COG2971	BadF BadG BcrA BcrD
JJL53_16395	COG0840	transmembrane signaling receptor activity
JJL53_16415	COG3724	N-succinylarginine dihydrolase activity
JJL53_16420	COG0616	signal peptide processing
JJL53_16425	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_16430	COG0583	DNA-binding transcription factor activity
JJL53_16440	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JJL53_16450	COG0583	DNA-binding transcription factor activity
JJL53_16455	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JJL53_16465	COG3408	Glycogen debranching enzyme
JJL53_16465	COG1626	Provides the cells with the ability to utilize trehalose at high osmolarity by splitting it into glucose molecules that can subsequently be taken up by the phosphotransferase-mediated uptake system
JJL53_16475	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JJL53_16480	COG0739	heme binding
JJL53_16485	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
JJL53_16510	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JJL53_16520	COG3091	SprT-like family
JJL53_16530	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JJL53_16535	COG0189	ligase activity
JJL53_16545	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JJL53_16565	COG1115	amino acid carrier protein
JJL53_16570	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JJL53_16590	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JJL53_16610	COG5433	transposase activity
JJL53_16625	COG2912	Transglutaminase-like superfamily
JJL53_16635	COG2890	protein-(glutamine-N5) methyltransferase activity
JJL53_16640	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JJL53_16645	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JJL53_16650	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
JJL53_16655	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JJL53_16665	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JJL53_16685	COG0193	aminoacyl-tRNA hydrolase activity
JJL53_16690	COG0012	GTP binding
JJL53_16735	COG0490	domain, Protein
JJL53_16735	COG0471	metal ion transport
JJL53_16745	COG0657	acetylesterase activity
JJL53_16760	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_16770	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_16780	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JJL53_16795	COG0180	Tryptophanyl-tRNA synthetase
JJL53_16805	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JJL53_16810	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JJL53_16820	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JJL53_16825	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JJL53_16865	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JJL53_16870	COG0583	DNA-binding transcription factor activity
JJL53_16885	COG0583	DNA-binding transcription factor activity
JJL53_16900	COG3121	Chaperone
JJL53_16905	COG3188	usher protein
JJL53_16910	COG3121	Chaperone
JJL53_16920	COG0739	heme binding
JJL53_16925	COG3385	transposase activity
JJL53_16935	COG1511	domain protein
JJL53_16935	COG3264	Mechanosensitive ion channel
JJL53_16940	COG0584	glycerophosphoryl diester phosphodiesterase
JJL53_16950	COG1053	succinate dehydrogenase
JJL53_16955	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JJL53_16960	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
JJL53_16970	COG3214	Protein conserved in bacteria
JJL53_16975	COG4106	trans-aconitate 2-methyltransferase activity
JJL53_16995	COG0300	oxidoreductase activity
JJL53_17010	COG0642	Histidine kinase
JJL53_17025	COG0516	GMP reductase activity
JJL53_17035	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JJL53_17040	COG3647	Membrane
JJL53_17050	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JJL53_17060	COG3706	GGDEF domain
JJL53_17085	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_17095	COG0583	DNA-binding transcription factor activity
JJL53_17100	COG1278	Cold shock
JJL53_17105	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JJL53_17110	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JJL53_17115	COG1702	phosphate starvation-inducible protein PhoH
JJL53_17120	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JJL53_17125	COG4535	Mg2 and Co2 transporter CorC
JJL53_17130	COG0815	Transfers the fatty acyl group on membrane lipoproteins
JJL53_17135	COG2888	peptidyl-tyrosine sulfation
JJL53_17140	COG0495	leucyl-tRNA aminoacylation
JJL53_17155	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JJL53_17160	COG0799	negative regulation of ribosome biogenesis
JJL53_17165	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JJL53_17170	COG0768	penicillin binding
JJL53_17175	COG0772	Belongs to the SEDS family
JJL53_17180	COG2951	lytic endotransglycosylase activity
JJL53_17185	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JJL53_17190	COG1686	Belongs to the peptidase S11 family
JJL53_17195	COG2921	Belongs to the UPF0250 family
JJL53_17200	COG0321	lipoyl(octanoyl) transferase activity
JJL53_17205	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JJL53_17215	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
JJL53_17225	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JJL53_17240	COG1970	mechanosensitive ion channel activity
JJL53_17250	COG4974	Belongs to the 'phage' integrase family
JJL53_17265	COG0312	modulator of DNA gyrase
JJL53_17280	COG0826	peptidase U32
JJL53_17285	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
JJL53_17300	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
JJL53_17310	COG1185	polyribonucleotide nucleotidyltransferase activity
JJL53_17315	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JJL53_17320	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JJL53_17325	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JJL53_17330	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JJL53_17335	COG0195	Participates in both transcription termination and antitermination
JJL53_17340	COG0779	Required for maturation of 30S ribosomal subunits
JJL53_17355	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JJL53_17360	COG0149	triose-phosphate isomerase activity
JJL53_17365	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JJL53_17370	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JJL53_17380	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
JJL53_17385	COG1534	Rna-binding protein
JJL53_17400	COG1360	Flagellar Motor Protein
JJL53_17405	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JJL53_17410	COG1722	exodeoxyribonuclease VII activity
JJL53_17415	COG0142	geranyltranstransferase activity
JJL53_17420	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JJL53_17425	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JJL53_17430	COG0601	transmembrane transport
JJL53_17440	COG4172	Belongs to the ABC transporter superfamily
JJL53_17445	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JJL53_17450	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JJL53_17455	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_17460	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JJL53_17475	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJL53_17475	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JJL53_17480	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JJL53_17495	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JJL53_17505	COG2198	Histidine kinase
JJL53_17505	COG0784	Response regulator, receiver
JJL53_17505	COG2205	protein histidine kinase activity
JJL53_17510	COG1879	ABC-type sugar transport system periplasmic component
JJL53_17520	COG0745	RESPONSE REGULATOR receiver
JJL53_17525	COG3005	denitrification pathway
JJL53_17535	COG3381	protein complex oligomerization
JJL53_17550	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJL53_17555	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JJL53_17560	COG0511	ligase activity, forming carbon-carbon bonds
JJL53_17565	COG0439	Biotin carboxylase
JJL53_17570	COG3924	membrane
JJL53_17575	COG4145	pantothenate transmembrane transporter activity
JJL53_17580	COG2190	(PTS) system
JJL53_17580	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_17580	COG1263	PTS System
JJL53_17585	COG0583	DNA-binding transcription factor activity
JJL53_17595	COG2264	protein methyltransferase activity
JJL53_17610	COG0778	Nitroreductase
JJL53_17615	COG1902	pentaerythritol trinitrate reductase activity
JJL53_17615	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_17620	COG0616	signal peptide processing
JJL53_17640	COG3139	Protein of unknown function (DUF1315)
JJL53_17645	COG0252	asparaginase activity
JJL53_17650	COG0786	glutamate:sodium symporter activity
JJL53_17655	COG5001	Diguanylate cyclase
JJL53_17670	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JJL53_17675	COG0384	phenazine biosynthesis protein PhzF
JJL53_17680	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JJL53_17685	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_17690	COG0175	sulfate reduction
JJL53_17695	COG2113	Glycine betaine
JJL53_17700	COG4176	ABC-type proline glycine betaine transport system permease component
JJL53_17705	COG4175	Glycine betaine
JJL53_17715	COG3610	response to peptide
JJL53_17720	COG2966	Psort location CytoplasmicMembrane, score
JJL53_17735	COG3385	transposase activity
JJL53_17755	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_17765	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_17770	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_17780	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JJL53_17805	COG2986	histidine ammonia-lyase
JJL53_17830	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_17835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JJL53_17850	COG3385	transposase activity
JJL53_17890	COG5433	transposase activity
JJL53_17900	COG2313	pseudouridylate synthase activity
JJL53_17905	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_17910	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_17910	COG2146	nitrite reductase [NAD(P)H] activity
JJL53_17915	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_17915	COG2146	nitrite reductase [NAD(P)H] activity
JJL53_17920	COG1116	anion transmembrane transporter activity
JJL53_17925	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JJL53_17930	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JJL53_17930	COG1116	anion transmembrane transporter activity
JJL53_17950	COG0243	molybdopterin cofactor binding
JJL53_17975	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JJL53_17990	COG1073	alpha beta
JJL53_17995	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
JJL53_18000	COG2195	Cleaves the N-terminal amino acid of tripeptides
JJL53_18005	COG4608	Belongs to the ABC transporter superfamily
JJL53_18010	COG0444	Belongs to the ABC transporter superfamily
JJL53_18015	COG0747	negative chemotaxis
JJL53_18020	COG4239	(ABC) transporter, permease
JJL53_18025	COG4174	ABC transporter (Permease)
JJL53_18030	COG5433	transposase activity
JJL53_18035	COG4206	TonB-dependent receptor
JJL53_18045	COG0811	peptide transport
JJL53_18050	COG0811	peptide transport
JJL53_18055	COG0848	biopolymer transport protein
JJL53_18100	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_18105	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_18110	COG0840	transmembrane signaling receptor activity
JJL53_18120	COG1278	Cold shock
JJL53_18155	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
JJL53_18165	COG0688	phosphatidylethanolamine metabolic process
JJL53_18170	COG4628	conserved protein (DUF2132)
JJL53_18185	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JJL53_18220	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
JJL53_18230	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JJL53_18240	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JJL53_18245	COG2017	converts alpha-aldose to the beta-anomer
JJL53_18255	COG1609	Transcriptional regulator
JJL53_18265	COG3039	Transposase
JJL53_18270	COG1342	Belongs to the UPF0251 family
JJL53_18295	COG5433	transposase activity
JJL53_18360	COG4974	Belongs to the 'phage' integrase family
JJL53_18370	COG0582	viral genome integration into host DNA
JJL53_18395	COG1132	(ABC) transporter
JJL53_18410	COG2897	thiosulfate sulfurtransferase activity
JJL53_18430	COG3385	transposase activity
JJL53_18440	COG3171	Protein conserved in bacteria
JJL53_18445	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JJL53_18450	COG2234	aminopeptidase activity
JJL53_18450	COG4935	Belongs to the peptidase S8 family
JJL53_18455	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JJL53_18460	COG2200	EAL domain
JJL53_18465	COG1090	epimerase
JJL53_18470	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
JJL53_18475	COG4181	ATPase activity
JJL53_18480	COG2755	lipolytic protein G-D-S-L family
JJL53_18495	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
JJL53_18500	COG3039	Transposase
JJL53_18510	COG0517	IMP dehydrogenase activity
JJL53_18515	COG0488	(ABC) transporter
JJL53_18525	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
JJL53_18550	COG3039	Transposase
JJL53_18560	COG5433	transposase activity
JJL53_18575	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JJL53_18580	COG1376	ErfK ybiS ycfS ynhG family protein
JJL53_18585	COG0668	transmembrane transport
JJL53_18595	COG2731	YhcH YjgK YiaL family protein
JJL53_18610	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JJL53_18625	COG5433	transposase activity
JJL53_18635	COG5433	transposase activity
JJL53_18640	COG0477	Major facilitator Superfamily
JJL53_18660	COG2985	domain, Protein
JJL53_18660	COG0569	domain protein
JJL53_18665	COG1272	protein, Hemolysin III
JJL53_18670	COG0076	glutamate decarboxylase activity
JJL53_18675	COG2917	probably involved in intracellular septation
JJL53_18680	COG2350	Protein conserved in bacteria
JJL53_18690	COG1555	photosystem II stabilization
JJL53_18695	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JJL53_18700	COG3385	transposase activity
JJL53_18705	COG3104	oligopeptide transport
JJL53_18710	COG0745	RESPONSE REGULATOR receiver
JJL53_18740	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_18750	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JJL53_18755	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
JJL53_18790	COG0316	Belongs to the HesB IscA family
JJL53_18800	COG0038	chloride channel
JJL53_18805	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JJL53_18825	COG0671	phosphoesterase, PA-phosphatase related
JJL53_18835	COG0583	DNA-binding transcription factor activity
JJL53_18840	COG2076	Multidrug Resistance protein
JJL53_18850	COG0346	lactoylglutathione lyase activity
JJL53_18855	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JJL53_18860	COG1643	Atp-dependent helicase
JJL53_18865	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JJL53_18870	COG1489	DNA binding
JJL53_18875	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JJL53_18880	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JJL53_18885	COG0617	tRNA 3'-terminal CCA addition
JJL53_18895	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JJL53_18900	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JJL53_18910	COG0842	Transport permease protein
JJL53_18915	COG1131	(ABC) transporter
JJL53_18930	COG0163	prenyltransferase activity
JJL53_18935	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JJL53_18940	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
JJL53_18955	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
JJL53_18990	COG0840	transmembrane signaling receptor activity
JJL53_19000	COG3385	transposase activity
JJL53_19010	COG0529	Catalyzes the synthesis of activated sulfate
JJL53_19015	COG0471	metal ion transport
JJL53_19015	COG3273	potassium ion transport
JJL53_19020	COG2895	sulfate adenylyltransferase (ATP) activity
JJL53_19025	COG0175	sulfate reduction
JJL53_19030	COG1648	precorrin-2 dehydrogenase activity
JJL53_19030	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JJL53_19035	COG0330	HflC and HflK could
JJL53_19040	COG1585	Membrane protein implicated in regulation of membrane protease activity
JJL53_19055	COG0673	inositol 2-dehydrogenase activity
JJL53_19065	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JJL53_19070	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJL53_19075	COG3036	rescue of stalled ribosome
JJL53_19095	COG0138	bifunctional purine biosynthesis protein purh
JJL53_19100	COG0151	Belongs to the GarS family
JJL53_19125	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JJL53_19130	COG0358	DNA primase activity
JJL53_19135	COG1610	YqeY-like protein
JJL53_19140	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JJL53_19145	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JJL53_19160	COG3039	Transposase
JJL53_19165	COG4942	peptidase
JJL53_19165	COG1388	LysM domain
JJL53_19170	COG1238	metal cluster binding
JJL53_19175	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
JJL53_19180	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
JJL53_19185	COG0585	pseudouridine synthase activity
JJL53_19195	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JJL53_19200	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JJL53_19205	COG0148	phosphopyruvate hydratase activity
JJL53_19210	COG0504	CTP synthase activity
JJL53_19215	COG3956	TIGRFAM MazG family protein
JJL53_19220	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JJL53_19225	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JJL53_19235	COG4807	Protein conserved in bacteria
JJL53_19240	COG3023	N-Acetylmuramoyl-L-alanine amidase
JJL53_19245	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
JJL53_19250	COG1381	Involved in DNA repair and RecF pathway recombination
JJL53_19260	COG0571	ribonuclease III activity
JJL53_19265	COG0681	Belongs to the peptidase S26 family
JJL53_19270	COG0481	GTPase activity
JJL53_19290	COG1595	DNA-templated transcription, initiation
JJL53_19295	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JJL53_19345	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JJL53_19350	COG0191	fructose-bisphosphate aldolase activity
JJL53_19355	COG0126	phosphoglycerate kinase activity
JJL53_19360	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JJL53_19365	COG1940	carbohydrate kinase activity
JJL53_19370	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JJL53_19380	COG4991	sh3 domain protein
JJL53_19385	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JJL53_19400	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
JJL53_19405	COG1028	Short-chain dehydrogenase reductase Sdr
JJL53_19415	COG1505	serine-type exopeptidase activity
JJL53_19420	COG3174	membrane
JJL53_19425	COG0110	maltose O-acetyltransferase activity
JJL53_19465	COG0165	Argininosuccinate lyase
JJL53_19470	COG0137	argininosuccinate synthase activity
JJL53_19480	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JJL53_19485	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JJL53_19495	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
JJL53_19545	COG0583	DNA-binding transcription factor activity
JJL53_19550	COG1380	Effector of murein hydrolase LrgA
JJL53_19555	COG1346	cytolysis
JJL53_19560	COG0527	aspartate kinase activity
JJL53_19560	COG0460	homoserine dehydrogenase
JJL53_19565	COG0626	cystathionine gamma-synthase activity
JJL53_19580	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_19585	COG0814	amino acid
JJL53_19590	COG1218	3'(2'),5'-bisphosphate nucleotidase
JJL53_19595	COG0494	nUDIX hydrolase
JJL53_19600	COG1011	Hydrolase
JJL53_19635	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
JJL53_19645	COG3156	type II secretion system protein K
JJL53_19655	COG4795	General secretion pathway protein
JJL53_19660	COG2165	general secretion pathway protein
JJL53_19670	COG2165	general secretion pathway protein
JJL53_19675	COG1459	type II secretion system
JJL53_19680	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JJL53_19690	COG3031	protein transport across the cell outer membrane
JJL53_19700	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JJL53_19705	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JJL53_19725	COG3133	Outer membrane lipoprotein
JJL53_19735	COG1392	Phosphate transport regulator
JJL53_19740	COG0306	phosphate transporter
JJL53_19745	COG0617	tRNA 3'-terminal CCA addition
JJL53_19750	COG3267	Type II secretory pathway component ExeA
JJL53_19750	COG3409	Peptidoglycan-binding domain 1 protein
JJL53_19760	COG1194	a g-specific adenine glycosylase
JJL53_19765	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
JJL53_19780	COG3240	lipase activity
JJL53_19790	COG3009	Protein conserved in bacteria
JJL53_19795	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJL53_19795	COG3008	intermembrane lipid transfer
JJL53_19800	COG2995	paraquat-inducible protein a
JJL53_19810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JJL53_19815	COG3706	GGDEF domain
JJL53_19815	COG2203	Gaf domain
JJL53_19815	COG4251	negative regulation of phosphorylation
JJL53_19815	COG5001	Diguanylate cyclase
JJL53_19820	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JJL53_19825	COG2813	Specifically methylates the guanine in position
JJL53_19830	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JJL53_19835	COG0297	glycogen (starch) synthase activity
JJL53_19875	COG1757	Na H antiporter
JJL53_19880	COG0583	DNA-binding transcription factor activity
JJL53_19885	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
JJL53_19890	COG3842	ATPase activity
JJL53_19900	COG5433	transposase activity
JJL53_19910	COG1177	transmembrane transport
JJL53_19915	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_19920	COG0109	protoheme IX farnesyltransferase activity
JJL53_19925	COG1612	heme a metabolic process
JJL53_19950	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
JJL53_19955	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JJL53_19960	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JJL53_19965	COG1444	tRNA N-acetyltransferase activity
JJL53_19985	COG1803	Methylglyoxal synthase
JJL53_20000	COG5433	transposase activity
JJL53_20005	COG0252	asparaginase activity
JJL53_20015	COG1609	Transcriptional regulator
JJL53_20025	COG1940	carbohydrate kinase activity
JJL53_20030	COG1447	Phosphotransferase system cellobiose-specific component IIA
JJL53_20035	COG2723	6-phospho-beta-galactosidase activity
JJL53_20040	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_20040	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_20045	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_20050	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JJL53_20060	COG1609	Transcriptional regulator
JJL53_20065	COG1263	PTS System
JJL53_20065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JJL53_20070	COG0366	Alpha amylase catalytic
JJL53_20075	COG0110	maltose O-acetyltransferase activity
JJL53_20080	COG1522	sequence-specific DNA binding
JJL53_20085	COG5006	permease, DMT superfamily
JJL53_20110	COG3385	transposase activity
JJL53_20145	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JJL53_20150	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JJL53_20165	COG0477	Major facilitator Superfamily
JJL53_20170	COG0523	cobalamin synthesis protein
JJL53_20180	COG1280	lysine exporter protein (LysE YggA)
JJL53_20190	COG2200	EAL domain
JJL53_20195	COG1049	propionate catabolic process, 2-methylcitrate cycle
JJL53_20200	COG1752	Esterase of the alpha-beta hydrolase superfamily
JJL53_20205	COG0840	transmembrane signaling receptor activity
JJL53_20220	COG3706	GGDEF domain
JJL53_20225	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JJL53_20230	COG0508	dehydrogenase complex catalyzes the overall conversion of
JJL53_20235	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
JJL53_20240	COG2186	Transcriptional regulator
JJL53_20260	COG5433	transposase activity
JJL53_20270	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JJL53_20275	COG1459	type II secretion system
JJL53_20280	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JJL53_20290	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
JJL53_20295	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
JJL53_20305	COG0653	protein targeting
JJL53_20315	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
JJL53_20320	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JJL53_20325	COG0849	cell division
JJL53_20330	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JJL53_20335	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JJL53_20340	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JJL53_20345	COG0772	Belongs to the SEDS family
JJL53_20350	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JJL53_20355	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JJL53_20360	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JJL53_20365	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JJL53_20370	COG0768	penicillin binding
JJL53_20375	COG3116	cell division
JJL53_20380	COG0275	rRNA processing
JJL53_20385	COG2001	Belongs to the MraZ family
JJL53_20410	COG5433	transposase activity
JJL53_20440	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JJL53_20445	COG3107	peptidoglycan biosynthetic process
JJL53_20450	COG0792	nuclease activity
JJL53_20455	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
JJL53_20460	COG2823	Periplasmic or secreted lipoprotein
JJL53_20465	COG2969	positive regulation of protein catabolic process
JJL53_20470	COG0625	glutathione transferase activity
JJL53_20475	COG2857	Cytochrome c1
JJL53_20480	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JJL53_20485	COG0723	plastoquinol--plastocyanin reductase activity
JJL53_20490	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JJL53_20495	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JJL53_20500	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
JJL53_20510	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJL53_20515	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JJL53_20525	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_20530	COG1660	Displays ATPase and GTPase activities
JJL53_20535	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JJL53_20550	COG1137	ATPase activity
JJL53_20555	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
JJL53_20560	COG3117	lipopolysaccharide transmembrane transporter activity
JJL53_20565	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
JJL53_20570	COG0517	IMP dehydrogenase activity
JJL53_20570	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JJL53_20575	COG1127	ABC transporter
JJL53_20580	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
JJL53_20585	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
JJL53_20590	COG2854	intermembrane phospholipid transfer
JJL53_20600	COG5007	Belongs to the BolA IbaG family
JJL53_20605	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JJL53_20610	COG0312	modulator of DNA gyrase
JJL53_20615	COG3028	Belongs to the UPF0307 family
JJL53_20625	COG3385	transposase activity
JJL53_20630	COG2926	Belongs to the UPF0265 family
JJL53_20665	COG1396	sequence-specific DNA binding
JJL53_20670	COG3135	benzoate transporter
JJL53_20680	COG1522	sequence-specific DNA binding
JJL53_20690	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
JJL53_20700	COG1546	Belongs to the CinA family
JJL53_20700	COG1058	Belongs to the CinA family
JJL53_20705	COG1988	membrane-bound metal-dependent
JJL53_20715	COG0561	phosphatase activity
JJL53_20720	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
JJL53_20735	COG1011	Hydrolase
JJL53_20750	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JJL53_20755	COG0019	diaminopimelate decarboxylase activity
JJL53_20765	COG1965	Belongs to the frataxin family
JJL53_20770	COG0400	carboxylic ester hydrolase activity
JJL53_20775	COG3072	Adenylate cyclase
JJL53_20780	COG0181	hydroxymethylbilane synthase activity
JJL53_20790	COG2959	enzyme of heme biosynthesis
JJL53_20795	COG3071	HemY protein
JJL53_20810	COG1494	fructose-1,6-bisphosphatase
JJL53_20820	COG1247	-acetyltransferase
JJL53_20840	COG1733	regulation of RNA biosynthetic process
JJL53_20855	COG3932	Exopolysaccharide synthesis, ExoD
JJL53_20885	COG3039	Transposase
JJL53_20890	COG3039	Transposase
JJL53_20895	COG3385	transposase activity
JJL53_20900	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JJL53_20905	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JJL53_20910	COG2022	thiamine diphosphate biosynthetic process
JJL53_20920	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_20925	COG0352	thiamine-phosphate diphosphorylase activity
JJL53_20930	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JJL53_20935	COG3385	transposase activity
JJL53_20945	COG5433	transposase activity
JJL53_20955	COG5433	transposase activity
JJL53_20980	COG0745	RESPONSE REGULATOR receiver
JJL53_20990	COG0189	ligase activity
JJL53_21050	COG3039	Transposase
JJL53_21055	COG1484	DNA-dependent DNA replication
JJL53_21060	COG5433	transposase activity
JJL53_21065	COG3385	transposase activity
JJL53_21070	COG3385	transposase activity
JJL53_21095	COG3385	transposase activity
JJL53_21110	COG0477	Major facilitator Superfamily
JJL53_21125	COG0312	modulator of DNA gyrase
JJL53_21130	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JJL53_21135	COG3164	Protein of unknown function
JJL53_21140	COG1530	ribonuclease E activity
JJL53_21145	COG0424	maF-like protein
JJL53_21150	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JJL53_21155	COG1792	Involved in formation and maintenance of cell shape
JJL53_21160	COG1077	Cell shape determining protein MreB Mrl
JJL53_21170	COG5433	transposase activity
JJL53_21205	COG2200	EAL domain
JJL53_21205	COG2199	diguanylate cyclase activity
JJL53_21210	COG3039	Transposase
JJL53_21215	COG2200	EAL domain
JJL53_21220	COG0387	Pfam Sodium calcium exchanger
JJL53_21225	COG2986	histidine ammonia-lyase
JJL53_21230	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
JJL53_21235	COG0010	Belongs to the arginase family
JJL53_21240	COG1228	amidohydrolase
JJL53_21250	COG2188	Transcriptional regulator
JJL53_21255	COG0288	reversible hydration of carbon dioxide
JJL53_21265	COG2177	Part of the ABC transporter FtsEX involved in
JJL53_21270	COG2884	Cell division ATP-binding protein ftsE
JJL53_21275	COG0552	protein localization to endoplasmic reticulum
JJL53_21280	COG0742	ribosomal rna small subunit methyltransferase
JJL53_21305	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JJL53_21335	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_21345	COG2095	MarC family integral membrane protein
JJL53_21355	COG1301	dicarboxylic acid transport
JJL53_21380	COG3714	YhhN family
JJL53_21410	COG1770	oligopeptidase
JJL53_21425	COG2249	NAD(P)H dehydrogenase (quinone) activity
JJL53_21455	COG4584	PFAM Integrase catalytic
JJL53_21495	COG4584	PFAM Integrase catalytic
JJL53_21500	COG1484	DNA-dependent DNA replication
JJL53_21505	COG0203	ribosomal protein L17
JJL53_21510	COG0202	RNA polymerase activity
JJL53_21515	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JJL53_21520	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JJL53_21525	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JJL53_21530	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JJL53_21535	COG0201	protein transport
JJL53_21540	COG0200	Binds to the 23S rRNA
JJL53_21545	COG1841	ribosomal large subunit assembly
JJL53_21550	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JJL53_21555	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JJL53_21560	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JJL53_21565	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JJL53_21570	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JJL53_21575	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JJL53_21580	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JJL53_21585	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JJL53_21590	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JJL53_21595	COG0255	Belongs to the universal ribosomal protein uL29 family
JJL53_21600	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
JJL53_21605	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JJL53_21610	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JJL53_21615	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JJL53_21620	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JJL53_21625	COG0089	rRNA binding
JJL53_21630	COG0088	Forms part of the polypeptide exit tunnel
JJL53_21635	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JJL53_21640	COG0051	transcription antitermination factor activity, RNA binding
JJL53_21650	COG2205	protein histidine kinase activity
JJL53_21660	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JJL53_21665	COG2183	response to ionizing radiation
JJL53_21680	COG0596	Alpha beta hydrolase
JJL53_21685	COG1040	competence protein
JJL53_21690	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JJL53_21690	COG0316	Belongs to the HesB IscA family
JJL53_21695	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JJL53_21700	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
JJL53_21705	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_21710	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JJL53_21715	COG4942	peptidase
JJL53_21725	COG1609	Transcriptional regulator
JJL53_21730	COG0800	Aldolase
JJL53_21735	COG0129	dihydroxy-acid dehydratase activity
JJL53_21740	COG3265	gluconokinase activity
JJL53_21745	COG2610	gluconate transmembrane transporter activity
JJL53_21750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JJL53_21755	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JJL53_21765	COG0456	acetyltransferase
JJL53_21775	COG1490	D-aminoacyl-tRNA deacylase activity
JJL53_21780	COG1295	ribonuclease BN
JJL53_21785	COG1295	ribonuclease BN
JJL53_21790	COG1217	gtp-binding protein TYPA
JJL53_21795	COG0174	glutamine synthetase
JJL53_21805	COG3852	Histidine kinase
JJL53_21815	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
JJL53_21820	COG5433	transposase activity
JJL53_21825	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JJL53_21835	COG3078	GTPase activator activity
JJL53_21845	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JJL53_21850	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JJL53_21855	COG0408	coproporphyrinogen oxidase activity
JJL53_21860	COG0009	L-threonylcarbamoyladenylate synthase
JJL53_21865	COG0551	DNA topoisomerase type I activity
JJL53_21870	COG2922	Belongs to the Smg family
JJL53_21875	COG0758	DNA mediated transformation
JJL53_21885	COG0242	peptide deformylase activity
JJL53_21890	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JJL53_21895	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JJL53_21895	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JJL53_21900	COG0569	domain protein
JJL53_21905	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_21910	COG1322	Protein conserved in bacteria
JJL53_21930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JJL53_21940	COG0519	Catalyzes the synthesis of GMP from XMP
JJL53_21940	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JJL53_21950	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JJL53_21955	COG1396	sequence-specific DNA binding
JJL53_21960	COG1012	belongs to the aldehyde dehydrogenase family
JJL53_21980	COG2962	Rard protein
JJL53_21990	COG1280	lysine exporter protein (LysE YggA)
JJL53_21995	COG2391	methyltransferase activity
JJL53_22020	COG0210	DNA helicase
JJL53_22025	COG1744	ABC transporter substrate-binding protein PnrA-like
JJL53_22030	COG3845	ABC transporter
JJL53_22035	COG4603	Belongs to the binding-protein-dependent transport system permease family
JJL53_22040	COG1079	Belongs to the binding-protein-dependent transport system permease family
JJL53_22055	COG0583	DNA-binding transcription factor activity
JJL53_22075	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JJL53_22080	COG0385	Bile acid
JJL53_22085	COG0531	amino acid
JJL53_22090	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JJL53_22095	COG0531	amino acid
JJL53_22100	COG2731	YhcH YjgK YiaL family protein
JJL53_22105	COG3250	beta-galactosidase activity
JJL53_22120	COG1609	Transcriptional regulator
JJL53_22160	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JJL53_22165	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_22165	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JJL53_22170	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
JJL53_22175	COG3074	FtsZ-dependent cytokinesis
JJL53_22185	COG1045	serine acetyltransferase
JJL53_22195	COG0745	RESPONSE REGULATOR receiver
JJL53_22200	COG2205	protein histidine kinase activity
JJL53_22205	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JJL53_22210	COG0534	Mate efflux family protein
JJL53_22225	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JJL53_22230	COG2937	Belongs to the GPAT DAPAT family
JJL53_22235	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JJL53_22240	COG3161	chorismate lyase activity
JJL53_22245	COG1580	Controls the rotational direction of flagella during chemotaxis
JJL53_22260	COG0604	alcohol dehydrogenase
JJL53_22275	COG5433	transposase activity
JJL53_22280	COG3385	transposase activity
JJL53_22295	COG3307	-O-antigen
JJL53_22300	COG0438	transferase activity, transferring glycosyl groups
JJL53_22305	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JJL53_22320	COG1063	alcohol dehydrogenase
JJL53_22335	COG0210	DNA helicase
JJL53_22340	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JJL53_22345	COG2166	iron-sulfur cluster assembly
JJL53_22350	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JJL53_22380	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
JJL53_22385	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JJL53_22390	COG1739	Uncharacterized protein family UPF0029
JJL53_22395	COG0006	proline dipeptidase activity
JJL53_22400	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JJL53_22405	COG1250	3-hydroxyacyl-CoA dehydrogenase
JJL53_22405	COG1024	Enoyl-CoA hydratase
JJL53_22410	COG0183	Belongs to the thiolase family
JJL53_22425	COG1653	transport
JJL53_22435	COG0425	Belongs to the sulfur carrier protein TusA family
JJL53_22440	COG0251	oxidation-reduction process
JJL53_22445	COG2885	chlorophyll binding
JJL53_22475	COG0752	glycyl-tRNA synthetase alpha subunit
JJL53_22480	COG0751	glycine-tRNA ligase activity
JJL53_22490	COG0814	amino acid
JJL53_22495	COG0814	amino acid
JJL53_22500	COG5433	transposase activity
JJL53_22510	COG3033	Beta-eliminating lyase
JJL53_22520	COG0348	domain, Protein
JJL53_22530	COG0446	pyridine nucleotide-disulphide oxidoreductase
JJL53_22535	COG0426	domain, Protein
JJL53_22535	COG1773	rubredoxin
JJL53_22540	COG3604	Transcriptional regulator
JJL53_22545	COG1609	Transcriptional regulator
JJL53_22585	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JJL53_22600	COG2960	long-chain fatty acid transporting porin activity
JJL53_22615	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
JJL53_22630	COG3118	belongs to the thioredoxin family
JJL53_22635	COG0513	Belongs to the DEAD box helicase family
JJL53_22640	COG0248	Ppx GppA phosphatase
JJL53_22655	COG0742	ribosomal rna small subunit methyltransferase
JJL53_22675	COG0084	hydrolase, TatD family'
JJL53_22680	COG0805	protein transport
JJL53_22685	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_22690	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_22695	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
JJL53_22700	COG3165	ubiquinone biosynthetic process from chorismate
JJL53_22705	COG2226	methyltransferase
JJL53_22710	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JJL53_22715	COG0402	S-adenosylhomocysteine deaminase activity
JJL53_22720	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
JJL53_22755	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
JJL53_22760	COG0848	biopolymer transport protein
JJL53_22765	COG0811	peptide transport
JJL53_22770	COG0811	peptide transport
JJL53_22780	COG2771	luxR family
JJL53_22785	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JJL53_22790	COG1349	DNA-binding transcription factor activity
JJL53_22795	COG0745	RESPONSE REGULATOR receiver
JJL53_22800	COG2205	protein histidine kinase activity
JJL53_22810	COG4452	Inner membrane protein CreD
JJL53_22815	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
JJL53_22820	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JJL53_22825	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JJL53_22830	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JJL53_22835	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JJL53_22840	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JJL53_22845	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JJL53_22855	COG0356	it plays a direct role in the translocation of protons across the membrane
JJL53_22865	COG1475	DNA binding
JJL53_22870	COG1192	Involved in chromosome partitioning
JJL53_22875	COG0357	Ribosomal RNA small subunit methyltransferase G
JJL53_22880	COG0445	tRNA wobble uridine modification
JJL53_22885	COG0716	FMN binding
JJL53_22890	COG4774	siderophore transport
JJL53_22895	COG4615	Cyclic peptide transporter
JJL53_22900	COG1120	ATPase activity
JJL53_22905	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JJL53_22910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JJL53_22915	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JJL53_22920	COG0706	membrane insertase activity
JJL53_22925	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JJL53_22930	COG0594	ribonuclease P activity
JJL53_22935	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JJL53_22940	COG1126	abc transporter atp-binding protein
JJL53_23010	COG5433	transposase activity
JJL53_23060	COG0675	Transposase, IS605 OrfB family
JJL53_23070	COG0210	DNA helicase
JJL53_23140	COG0675	Transposase, IS605 OrfB family
JJL53_23160	COG5433	transposase activity
JJL53_23165	COG5433	transposase activity
JJL53_23200	COG3385	transposase activity
JJL53_23210	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_23225	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_23260	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JJL53_23265	COG4584	PFAM Integrase catalytic
JJL53_23270	COG1484	DNA-dependent DNA replication
JJL53_23300	COG0675	Transposase, IS605 OrfB family
JJL53_23320	COG5433	transposase activity
JJL53_23360	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JJL53_23375	COG2189	Belongs to the N(4) N(6)-methyltransferase family
JJL53_23380	COG5433	transposase activity
JJL53_23395	COG0783	Belongs to the Dps family
JJL53_23405	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JJL53_23410	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JJL53_23420	COG4372	Transposase
JJL53_23425	COG3436	PFAM IS66 Orf2 family protein
JJL53_23455	COG5433	transposase activity
JJL53_23465	COG1342	Belongs to the UPF0251 family
JJL53_23520	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
JJL53_23545	COG0675	Transposase, IS605 OrfB family
JJL53_23580	COG5433	transposase activity
JJL53_23595	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JJL53_23600	COG1131	(ABC) transporter
JJL53_23605	COG0842	Transport permease protein
JJL53_23610	COG0842	Transport permease protein
JJL53_23615	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JJL53_23630	COG2116	formate transmembrane transporter activity
JJL53_23645	COG0675	Transposase, IS605 OrfB family
JJL53_23675	COG0675	Transposase, IS605 OrfB family
JJL53_23780	COG0629	single-stranded DNA binding
JJL53_23785	COG0675	Transposase, IS605 OrfB family
JJL53_23805	COG0675	Transposase, IS605 OrfB family
JJL53_23880	COG0675	Transposase, IS605 OrfB family
JJL53_23980	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JJL53_24010	COG5433	transposase activity
JJL53_24020	COG5001	Diguanylate cyclase
JJL53_24020	COG3300	MHYT domain
JJL53_24040	COG5433	transposase activity
JJL53_24050	COG0675	Transposase, IS605 OrfB family
JJL53_24110	COG0675	Transposase, IS605 OrfB family
JJL53_24135	COG0675	Transposase, IS605 OrfB family
JJL53_24140	COG0681	Belongs to the peptidase S26 family
JJL53_24205	COG5377	YqaJ viral recombinase family
JJL53_24235	COG2003	Belongs to the UPF0758 family
JJL53_24285	COG0494	nUDIX hydrolase
JJL53_24360	COG0675	Transposase, IS605 OrfB family
JJL53_24370	COG0675	Transposase, IS605 OrfB family
JJL53_24420	COG4804	nuclease activity
JJL53_24455	COG0675	Transposase, IS605 OrfB family
JJL53_24475	COG2916	Histone family protein nucleoid-structuring protein H-NS
JJL53_24480	COG5433	transposase activity
JJL53_24485	COG3039	Transposase
JJL53_24490	COG0243	molybdopterin cofactor binding
JJL53_24495	COG0437	4 iron, 4 sulfur cluster binding
JJL53_24500	COG3302	dmso reductase anchor subunit
JJL53_24510	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JJL53_24515	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
JJL53_24525	COG0314	molybdopterin synthase activity
JJL53_24530	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JJL53_24535	COG0315	cyclic pyranopterin monophosphate synthase activity
JJL53_24540	COG0521	Mo-molybdopterin cofactor biosynthetic process
JJL53_24545	COG3039	Transposase
JJL53_24550	COG3005	denitrification pathway
JJL53_24555	COG0243	molybdopterin cofactor binding
JJL53_24565	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JJL53_24570	COG0805	protein transport
JJL53_24580	COG5433	transposase activity
JJL53_24590	COG0653	protein targeting
JJL53_24625	COG1660	Displays ATPase and GTPase activities
JJL53_24645	COG3173	Aminoglycoside phosphotransferase
JJL53_24675	COG1192	Involved in chromosome partitioning
JJL53_24740	COG3727	T/G mismatch-specific endonuclease activity
JJL53_24755	COG3077	Addiction module antitoxin, RelB DinJ family
JJL53_24760	COG2026	Addiction module toxin, RelE StbE family
JJL53_24770	COG5433	transposase activity