locus-tag class description E4185_00010 PF10725 Protein of unknown function (DUF2517) E4185_00045 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E4185_00055 PF07690 Major Facilitator Superfamily E4185_00075 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E4185_00080 PF02416 mttA/Hcf106 family E4185_00085 PF05573 NosL E4185_00090 PF12679 ABC-2 family transporter protein E4185_00095 PF00005 ABC transporter E4185_00100 PF05048 Periplasmic copper-binding protein (NosD) E4185_00105 PF18793 Nitrous oxide reductase propeller repeat 2 E4185_00105 PF18764 Nitrous oxide reductase propeller repeat E4185_00105 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4185_00110 PF04205 FMN-binding domain E4185_00110 PF12801 4Fe-4S binding domain E4185_00115 PF01418 Helix-turn-helix domain, rpiR family E4185_00115 PF01380 SIS domain E4185_00125 PF03734 L,D-transpeptidase catalytic domain E4185_00125 PF17969 L,D-transpeptidase C-terminal domain E4185_00125 PF01476 LysM domain E4185_00135 PF01575 MaoC like domain E4185_00140 PF05971 RNA methyltransferase E4185_00145 PF00877 NlpC/P60 family E4185_00150 PF01648 4'-phosphopantetheinyl transferase superfamily E4185_00155 PF00085 Thioredoxin E4185_00165 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4185_00170 PF01842 ACT domain E4185_00170 PF00551 Formyl transferase E4185_00180 PF13091 PLD-like domain E4185_00180 PF13396 Phospholipase_D-nuclease N-terminal E4185_00195 PF01464 Transglycosylase SLT domain E4185_00195 PF10145 Phage-related minor tail protein E4185_00195 PF01551 Peptidase family M23 E4185_00200 PF00230 Major intrinsic protein E4185_00205 PF02075 Crossover junction endodeoxyribonuclease RuvC E4185_00210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4185_00225 PF13808 DDE_Tnp_1-associated E4185_00225 PF01609 Transposase DDE domain E4185_00240 PF11842 Domain of unknown function (DUF3362) E4185_00240 PF08497 Radical SAM N-terminal E4185_00240 PF04055 Radical SAM superfamily E4185_00245 PF00873 AcrB/AcrD/AcrF family E4185_00255 PF00990 Diguanylate cyclase, GGDEF domain E4185_00255 PF05230 MASE2 domain E4185_00260 PF01734 Patatin-like phospholipase E4185_00265 PF00209 Sodium:neurotransmitter symporter family E4185_00280 PF00691 OmpA family E4185_00280 PF01389 OmpA-like transmembrane domain E4185_00285 PF01389 OmpA-like transmembrane domain E4185_00285 PF00691 OmpA family E4185_00295 PF03949 Malic enzyme, NAD binding domain E4185_00295 PF00390 Malic enzyme, N-terminal domain E4185_00300 PF12833 Helix-turn-helix domain E4185_00310 PF10692 Protein of unknown function (DUF2498) E4185_00315 PF00072 Response regulator receiver domain E4185_00315 PF00990 Diguanylate cyclase, GGDEF domain E4185_00320 PF00860 Permease family E4185_00330 PF01235 Sodium:alanine symporter family E4185_00335 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4185_00335 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4185_00340 PF01699 Sodium/calcium exchanger protein E4185_00345 PF08534 Redoxin E4185_00350 PF00293 NUDIX domain E4185_00360 PF00005 ABC transporter E4185_00365 PF00528 Binding-protein-dependent transport system inner membrane component E4185_00370 PF00528 Binding-protein-dependent transport system inner membrane component E4185_00375 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_00390 PF00005 ABC transporter E4185_00395 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_00395 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4185_00410 PF03932 CutC family E4185_00415 PF00480 ROK family E4185_00425 PF01435 Peptidase family M48 E4185_00430 PF12849 PBP superfamily domain E4185_00440 PF00486 Transcriptional regulatory protein, C terminal E4185_00440 PF00072 Response regulator receiver domain E4185_00445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_00455 PF02954 Bacterial regulatory protein, Fis family E4185_00455 PF00158 Sigma-54 interaction domain E4185_00455 PF01590 GAF domain E4185_00460 PF00171 Aldehyde dehydrogenase family E4185_00470 PF00892 EamA-like transporter family E4185_00475 PF12431 Transcriptional regulator E4185_00475 PF00072 Response regulator receiver domain E4185_00480 PF17203 Single cache domain 3 E4185_00480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E4185_00480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_00480 PF00989 PAS fold E4185_00490 PF03390 2-hydroxycarboxylate transporter family E4185_00495 PF01047 MarR family E4185_00500 PF00529 HlyD membrane-fusion protein of T1SS E4185_00500 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_00520 PF01679 Proteolipid membrane potential modulator E4185_00530 PF03477 ATP cone domain E4185_00530 PF13597 Anaerobic ribonucleoside-triphosphate reductase E4185_00540 PF03120 NAD-dependent DNA ligase OB-fold domain E4185_00540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E4185_00540 PF00533 BRCA1 C Terminus (BRCT) domain E4185_00540 PF01653 NAD-dependent DNA ligase adenylation domain E4185_00540 PF12826 Helix-hairpin-helix motif E4185_00545 PF04354 ZipA, C-terminal FtsZ-binding domain E4185_00560 PF03458 UPF0126 domain E4185_00570 PF05951 Bacterial protein of unknown function (DUF882) E4185_00575 PF01471 Putative peptidoglycan binding domain E4185_00575 PF03734 L,D-transpeptidase catalytic domain E4185_00590 PF00535 Glycosyl transferase family 2 E4185_00605 PF00128 Alpha amylase, catalytic domain E4185_00615 PF00196 Bacterial regulatory proteins, luxR family E4185_00615 PF00072 Response regulator receiver domain E4185_00645 PF02254 TrkA-N domain E4185_00645 PF02080 TrkA-C domain E4185_00645 PF00999 Sodium/hydrogen exchanger family E4185_00650 PF00990 Diguanylate cyclase, GGDEF domain E4185_00655 PF01171 PP-loop family E4185_00655 PF09179 TilS substrate binding domain E4185_00655 PF11734 TilS substrate C-terminal domain E4185_00660 PF01431 Peptidase family M13 E4185_00660 PF05649 Peptidase family M13 E4185_00670 PF16326 ABC transporter C-terminal domain E4185_00670 PF00005 ABC transporter E4185_00670 PF12848 ABC transporter E4185_00675 PF13302 Acetyltransferase (GNAT) domain E4185_00680 PF13520 Amino acid permease E4185_00690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_00690 PF03466 LysR substrate binding domain E4185_00700 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4185_00705 PF01336 OB-fold nucleic acid binding domain E4185_00705 PF02811 PHP domain E4185_00705 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4185_00705 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4185_00705 PF14579 Helix-hairpin-helix motif E4185_00710 PF01351 Ribonuclease HII E4185_00715 PF02684 Lipid-A-disaccharide synthetase E4185_00720 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E4185_00720 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_00725 PF07977 FabA-like domain E4185_00730 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_00730 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E4185_00735 PF03938 Outer membrane protein (OmpH-like) E4185_00740 PF01103 Surface antigen E4185_00740 PF07244 Surface antigen variable number repeat E4185_00745 PF02163 Peptidase family M50 E4185_00745 PF17820 PDZ domain E4185_00750 PF13288 DXP reductoisomerase C-terminal domain E4185_00750 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4185_00750 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4185_00760 PF01255 Putative undecaprenyl diphosphate synthase E4185_00765 PF01765 Ribosome recycling factor E4185_00770 PF00696 Amino acid kinase family E4185_00775 PF00889 Elongation factor TS E4185_00780 PF00318 Ribosomal protein S2 E4185_00785 PF00557 Metallopeptidase family M24 E4185_00790 PF01909 Nucleotidyltransferase domain E4185_00790 PF01842 ACT domain E4185_00790 PF01966 HD domain E4185_00790 PF08335 GlnD PII-uridylyltransferase E4185_00795 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E4185_00795 PF14602 Hexapeptide repeat of succinyl-transferase E4185_00795 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_00800 PF11944 Protein of unknown function (DUF3461) E4185_00805 PF00367 phosphotransferase system, EIIB E4185_00805 PF02378 Phosphotransferase system, EIIC E4185_00810 PF07148 Maltose operon periplasmic protein precursor (MalM) E4185_00815 PF02264 LamB porin E4185_00820 PF00258 Flavodoxin E4185_00825 PF00849 RNA pseudouridylate synthase E4185_00830 PF04287 tRNA pseudouridine synthase C E4185_00855 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) E4185_00860 PF07348 Syd protein (SUKH-2) E4185_00865 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E4185_00865 PF14489 QueF-like protein E4185_00875 PF00990 Diguanylate cyclase, GGDEF domain E4185_00880 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E4185_00880 PF03641 Possible lysine decarboxylase E4185_00880 PF11892 Domain of unknown function (DUF3412) E4185_00885 PF01367 5'-3' exonuclease, C-terminal SAM fold E4185_00885 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4185_00890 PF00180 Isocitrate/isopropylmalate dehydrogenase E4185_00890 PF18324 Hypothetical protein TT1725 E4185_00900 PF01728 FtsJ-like methyltransferase E4185_00900 PF18125 RlmM ferredoxin-like domain E4185_00905 PF04241 Protein of unknown function (DUF423) E4185_00915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_00915 PF03466 LysR substrate binding domain E4185_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_00920 PF00672 HAMP domain E4185_00925 PF11798 IMS family HHH motif E4185_00925 PF11799 impB/mucB/samB family C-terminal domain E4185_00925 PF00817 impB/mucB/samB family E4185_00940 PF02424 ApbE family E4185_00945 PF00175 Oxidoreductase NAD-binding domain E4185_00945 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_00945 PF00970 Oxidoreductase FAD-binding domain E4185_00950 PF02508 Rnf-Nqr subunit, membrane protein E4185_00955 PF02508 Rnf-Nqr subunit, membrane protein E4185_00960 PF04205 FMN-binding domain E4185_00965 PF03116 NQR2, RnfD, RnfE family E4185_00970 PF11973 NQRA C-terminal domain E4185_00970 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) E4185_00975 PF01722 BolA-like protein E4185_00980 PF05175 Methyltransferase small domain E4185_00990 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4185_01000 PF07690 Major Facilitator Superfamily E4185_01005 PF03502 Nucleoside-specific channel-forming protein, Tsx E4185_01010 PF04461 Protein of unknown function (DUF520) E4185_01015 PF02558 Ketopantoate reductase PanE/ApbA E4185_01015 PF08546 Ketopantoate reductase PanE/ApbA C terminal E4185_01020 PF01965 DJ-1/PfpI family E4185_01025 PF01740 STAS domain E4185_01025 PF00916 Sulfate permease family E4185_01050 PF04545 Sigma-70, region 4 E4185_01050 PF04542 Sigma-70 region 2 E4185_01055 PF03960 ArsC family E4185_01060 PF01758 Sodium Bile acid symporter family E4185_01070 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4185_01070 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4185_01110 PF04962 KduI/IolB family E4185_01115 PF01261 Xylose isomerase-like TIM barrel E4185_01125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E4185_01125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4185_01130 PF00929 Exonuclease E4185_01130 PF14579 Helix-hairpin-helix motif E4185_01130 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4185_01130 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4185_01130 PF02811 PHP domain E4185_01140 PF00474 Sodium:solute symporter family E4185_01145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E4185_01145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4185_01150 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4185_01150 PF00205 Thiamine pyrophosphate enzyme, central domain E4185_01150 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4185_01160 PF00171 Aldehyde dehydrogenase family E4185_01170 PF02371 Transposase IS116/IS110/IS902 family E4185_01170 PF01548 Transposase E4185_01180 PF01527 Transposase E4185_01200 PF00381 PTS HPr component phosphorylation site E4185_01200 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4185_01200 PF05524 PEP-utilising enzyme, N-terminal E4185_01200 PF02896 PEP-utilising enzyme, TIM barrel domain E4185_01200 PF00391 PEP-utilising enzyme, mobile domain E4185_01205 PF09261 Alpha mannosidase middle domain E4185_01205 PF07748 Glycosyl hydrolases family 38 C-terminal domain E4185_01205 PF01074 Glycosyl hydrolases family 38 N-terminal domain E4185_01210 PF01609 Transposase DDE domain E4185_01210 PF05598 Transposase domain (DUF772) E4185_01230 PF16363 GDP-mannose 4,6 dehydratase E4185_01235 PF00175 Oxidoreductase NAD-binding domain E4185_01235 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_01235 PF00970 Oxidoreductase FAD-binding domain E4185_01240 PF03063 Prismane/CO dehydrogenase family E4185_01245 PF00210 Ferritin-like domain E4185_01285 PF00106 short chain dehydrogenase E4185_01295 PF03441 FAD binding domain of DNA photolyase E4185_01295 PF00875 DNA photolyase E4185_01300 PF13411 MerR HTH family regulatory protein E4185_01305 PF08349 Protein of unknown function (DUF1722) E4185_01330 PF01817 Chorismate mutase type II E4185_01330 PF00800 Prephenate dehydratase E4185_01355 PF04976 DMSO reductase anchor subunit (DmsC) E4185_01360 PF12800 4Fe-4S binding domain E4185_01360 PF13247 4Fe-4S dicluster domain E4185_01370 PF02371 Transposase IS116/IS110/IS902 family E4185_01370 PF01548 Transposase E4185_01385 PF03976 Polyphosphate kinase 2 (PPK2) E4185_01390 PF01740 STAS domain E4185_01390 PF00916 Sulfate permease family E4185_01405 PF08220 DeoR-like helix-turn-helix domain E4185_01405 PF00455 DeoR C terminal sensor domain E4185_01410 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4185_01410 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4185_01415 PF07005 Sugar-binding N-terminal domain E4185_01415 PF17042 Nucleotide-binding C-terminal domain E4185_01420 PF00596 Class II Aldolase and Adducin N-terminal domain E4185_01425 PF01261 Xylose isomerase-like TIM barrel E4185_01430 PF01370 NAD dependent epimerase/dehydratase family E4185_01435 PF02447 GntP family permease E4185_01445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_01450 PF03573 outer membrane porin, OprD family E4185_01455 PF00106 short chain dehydrogenase E4185_01480 PF02074 Carboxypeptidase Taq (M32) metallopeptidase E4185_01485 PF00730 HhH-GPD superfamily base excision DNA repair protein E4185_01485 PF02805 Metal binding domain of Ada E4185_01485 PF12833 Helix-turn-helix domain E4185_01485 PF06029 AlkA N-terminal domain E4185_01490 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4185_01490 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4185_01500 PF06906 Protein of unknown function (DUF1272) E4185_01510 PF01136 Peptidase family U32 E4185_01510 PF12392 Collagenase E4185_01515 PF01810 LysE type translocator E4185_01520 PF03466 LysR substrate binding domain E4185_01520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_01550 PF00990 Diguanylate cyclase, GGDEF domain E4185_01550 PF00989 PAS fold E4185_01550 PF00563 EAL domain E4185_01550 PF01590 GAF domain E4185_01565 PF03916 Polysulphide reductase, NrfD E4185_01570 PF13247 4Fe-4S dicluster domain E4185_01575 PF00989 PAS fold E4185_01575 PF00512 His Kinase A (phospho-acceptor) domain E4185_01575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_01580 PF00196 Bacterial regulatory proteins, luxR family E4185_01580 PF00072 Response regulator receiver domain E4185_01585 PF03575 Peptidase family S51 E4185_01590 PF10415 Fumarase C C-terminus E4185_01590 PF00206 Lyase E4185_01600 PF01619 Proline dehydrogenase E4185_01600 PF14850 DNA-binding domain of Proline dehydrogenase E4185_01600 PF00171 Aldehyde dehydrogenase family E4185_01600 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E4185_01605 PF01168 Alanine racemase, N-terminal domain E4185_01605 PF00842 Alanine racemase, C-terminal domain E4185_01610 PF03796 DnaB-like helicase C terminal domain E4185_01610 PF00772 DnaB-like helicase N terminal domain E4185_01615 PF03796 DnaB-like helicase C terminal domain E4185_01615 PF00772 DnaB-like helicase N terminal domain E4185_01625 PF02872 5'-nucleotidase, C-terminal domain E4185_01625 PF00149 Calcineurin-like phosphoesterase E4185_01645 PF00072 Response regulator receiver domain E4185_01645 PF02954 Bacterial regulatory protein, Fis family E4185_01645 PF00158 Sigma-54 interaction domain E4185_01650 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4185_01650 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_01660 PF04102 SlyX E4185_01665 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_01670 PF09526 Probable metal-binding protein (DUF2387) E4185_01680 PF00072 Response regulator receiver domain E4185_01680 PF01584 CheW-like domain E4185_01685 PF00561 alpha/beta hydrolase fold E4185_01690 PF00360 Phytochrome region E4185_01690 PF00563 EAL domain E4185_01690 PF01590 GAF domain E4185_01690 PF00990 Diguanylate cyclase, GGDEF domain E4185_01695 PF06794 Uncharacterised protein family (UPF0270) E4185_01700 PF00485 Phosphoribulokinase / Uridine kinase family E4185_01715 PF02566 OsmC-like protein E4185_01720 PF13545 Crp-like helix-turn-helix domain E4185_01720 PF00027 Cyclic nucleotide-binding domain E4185_01725 PF08241 Methyltransferase domain E4185_01730 PF17945 Beta/Gamma crystallin E4185_01730 PF12561 ToxR activated gene A lipoprotein domain E4185_01745 PF00512 His Kinase A (phospho-acceptor) domain E4185_01745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_01750 PF12832 MFS_1 like family E4185_01775 PF01243 Pyridoxamine 5'-phosphate oxidase E4185_01780 PF06228 Haem utilisation ChuX/HutX E4185_01790 PF01032 FecCD transport family E4185_01795 PF00005 ABC transporter E4185_01805 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E4185_01805 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E4185_01805 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E4185_01810 PF01370 NAD dependent epimerase/dehydratase family E4185_01815 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E4185_01830 PF01464 Transglycosylase SLT domain E4185_01835 PF12848 ABC transporter E4185_01835 PF00005 ABC transporter E4185_01845 PF00860 Permease family E4185_01850 PF05099 Tellurite resistance protein TerB E4185_01850 PF00226 DnaJ domain E4185_01855 PF00483 Nucleotidyl transferase E4185_01860 PF01636 Phosphotransferase enzyme family E4185_01865 PF04453 LPS transport system D E4185_01865 PF03968 OstA-like protein E4185_01870 PF00639 PPIC-type PPIASE domain E4185_01870 PF09312 SurA N-terminal domain E4185_01875 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E4185_01880 PF00398 Ribosomal RNA adenine dimethylase E4185_01885 PF04379 ApaG domain E4185_01890 PF00149 Calcineurin-like phosphoesterase E4185_01900 PF00296 Luciferase-like monooxygenase E4185_01915 PF01926 50S ribosome-binding GTPase E4185_01915 PF01018 GTP1/OBG E4185_01920 PF01016 Ribosomal L27 protein E4185_01925 PF00829 Ribosomal prokaryotic L21 protein E4185_01930 PF00348 Polyprenyl synthetase E4185_01935 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) E4185_01940 PF01145 SPFH domain / Band 7 family E4185_01945 PF12221 Bacterial membrane protein N terminal E4185_01945 PF01145 SPFH domain / Band 7 family E4185_01950 PF16360 GTP-binding GTPase Middle Region E4185_01950 PF01926 50S ribosome-binding GTPase E4185_01950 PF13167 GTP-binding GTPase N-terminal E4185_01955 PF17209 Hfq protein E4185_01965 PF08676 MutL C terminal dimerisation domain E4185_01965 PF01119 DNA mismatch repair protein, C-terminal domain E4185_01970 PF01520 N-acetylmuramoyl-L-alanine amidase E4185_01975 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4185_01980 PF03853 YjeF-related protein N-terminus E4185_01980 PF01256 Carbohydrate kinase E4185_01985 PF08331 Domain of unknown function (DUF1730) E4185_01990 PF00480 ROK family E4185_02000 PF09383 NIL domain E4185_02000 PF00005 ABC transporter E4185_02005 PF00528 Binding-protein-dependent transport system inner membrane component E4185_02010 PF03180 NLPA lipoprotein E4185_02015 PF02357 Transcription termination factor nusG E4185_02020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_02020 PF00672 HAMP domain E4185_02025 PF00990 Diguanylate cyclase, GGDEF domain E4185_02025 PF03707 Bacterial signalling protein N terminal repeat E4185_02025 PF00563 EAL domain E4185_02050 PF13286 Phosphohydrolase-associated domain E4185_02050 PF01966 HD domain E4185_02055 PF00512 His Kinase A (phospho-acceptor) domain E4185_02055 PF18415 Histidine kinase receptor ArcB trans-membrane domain E4185_02055 PF00072 Response regulator receiver domain E4185_02055 PF00989 PAS fold E4185_02055 PF01627 Hpt domain E4185_02055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_02080 PF03466 LysR substrate binding domain E4185_02080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_02090 PF01259 SAICAR synthetase E4185_02095 PF06804 NlpB/DapX lipoprotein E4185_02100 PF00701 Dihydrodipicolinate synthetase family E4185_02105 PF01842 ACT domain E4185_02110 PF00578 AhpC/TSA family E4185_02115 PF03887 YfbU domain E4185_02120 PF04217 Protein of unknown function, DUF412 E4185_02125 PF00871 Acetokinase family E4185_02130 PF07085 DRTGG domain E4185_02130 PF01515 Phosphate acetyl/butaryl transferase E4185_02135 PF10369 Small subunit of acetolactate synthase E4185_02140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4185_02140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4185_02140 PF00205 Thiamine pyrophosphate enzyme, central domain E4185_02150 PF04101 Glycosyltransferase family 28 C-terminal domain E4185_02150 PF03033 Glycosyltransferase family 28 N-terminal domain E4185_02155 PF01569 PAP2 superfamily E4185_02165 PF08502 LeuA allosteric (dimerisation) domain E4185_02165 PF00682 HMGL-like E4185_02175 PF00330 Aconitase family (aconitate hydratase) E4185_02180 PF00694 Aconitase C-terminal domain E4185_02200 PF00528 Binding-protein-dependent transport system inner membrane component E4185_02205 PF00005 ABC transporter E4185_02215 PF02562 PhoH-like protein E4185_02215 PF13638 PIN domain E4185_02225 PF00317 Ribonucleotide reductase, all-alpha domain E4185_02225 PF02867 Ribonucleotide reductase, barrel domain E4185_02225 PF03477 ATP cone domain E4185_02260 PF03060 Nitronate monooxygenase E4185_02270 PF00445 Ribonuclease T2 family E4185_02285 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase E4185_02295 PF00990 Diguanylate cyclase, GGDEF domain E4185_02300 PF00271 Helicase conserved C-terminal domain E4185_02300 PF00270 DEAD/DEAH box helicase E4185_02310 PF00753 Metallo-beta-lactamase superfamily E4185_02320 PF01425 Amidase E4185_02325 PF04371 Porphyromonas-type peptidyl-arginine deiminase E4185_02330 PF03466 LysR substrate binding domain E4185_02330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_02345 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4185_02350 PF00583 Acetyltransferase (GNAT) family E4185_02355 PF12804 MobA-like NTP transferase domain E4185_02355 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_02365 PF03144 Elongation factor Tu domain 2 E4185_02365 PF16658 Class II release factor RF3, C-terminal domain E4185_02365 PF00009 Elongation factor Tu GTP binding domain E4185_02380 PF05762 VWA domain containing CoxE-like protein E4185_02385 PF12592 Protein of unknown function (DUF3763) E4185_02385 PF17868 AAA lid domain E4185_02385 PF07728 AAA domain (dynein-related subfamily) E4185_02395 PF00583 Acetyltransferase (GNAT) family E4185_02405 PF00501 AMP-binding enzyme E4185_02415 PF01177 Asp/Glu/Hydantoin racemase E4185_02430 PF00392 Bacterial regulatory proteins, gntR family E4185_02430 PF00155 Aminotransferase class I and II E4185_02445 PF00209 Sodium:neurotransmitter symporter family E4185_02450 PF00209 Sodium:neurotransmitter symporter family E4185_02480 PF01037 Lrp/AsnC ligand binding domain E4185_02495 PF01047 MarR family E4185_02500 PF16884 N-terminal domain of oxidoreductase E4185_02500 PF00107 Zinc-binding dehydrogenase E4185_02505 PF00293 NUDIX domain E4185_02515 PF01641 SelR domain E4185_02520 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4185_02520 PF00128 Alpha amylase, catalytic domain E4185_02525 PF00128 Alpha amylase, catalytic domain E4185_02525 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4185_02525 PF02806 Alpha amylase, C-terminal all-beta domain E4185_02530 PF02446 4-alpha-glucanotransferase E4185_02535 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4185_02535 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4185_02540 PF01263 Aldose 1-epimerase E4185_02545 PF02445 Quinolinate synthetase A protein E4185_02620 PF13174 Tetratricopeptide repeat E4185_02620 PF16331 TolA binding protein trimerisation E4185_02625 PF00691 OmpA family E4185_02630 PF07676 WD40-like Beta Propeller Repeat E4185_02630 PF04052 TolB amino-terminal domain E4185_02640 PF02472 Biopolymer transport protein ExbD/TolR E4185_02645 PF01618 MotA/TolQ/ExbB proton channel family E4185_02650 PF03061 Thioesterase superfamily E4185_02655 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) E4185_02660 PF08173 Membrane bound YbgT-like protein E4185_02665 PF02322 Cytochrome bd terminal oxidase subunit II E4185_02670 PF01654 Cytochrome bd terminal oxidase subunit I E4185_02675 PF17864 RuvB AAA lid domain E4185_02675 PF05491 RuvB C-terminal winged helix domain E4185_02675 PF05496 Holliday junction DNA helicase RuvB P-loop domain E4185_02680 PF01330 RuvA N terminal domain E4185_02680 PF07499 RuvA, C-terminal domain E4185_02685 PF04073 Aminoacyl-tRNA editing domain E4185_02685 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4185_02685 PF03129 Anticodon binding domain E4185_02690 PF00106 short chain dehydrogenase E4185_02705 PF00378 Enoyl-CoA hydratase/isomerase E4185_02710 PF10952 Protein of unknown function (DUF2753) E4185_02715 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_02725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_02735 PF08447 PAS fold E4185_02735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_02740 PF03372 Endonuclease/Exonuclease/phosphatase family E4185_02755 PF00270 DEAD/DEAH box helicase E4185_02755 PF00271 Helicase conserved C-terminal domain E4185_02760 PF14863 Alkyl sulfatase dimerisation E4185_02760 PF00753 Metallo-beta-lactamase superfamily E4185_02760 PF14864 Alkyl sulfatase C-terminal E4185_02770 PF08534 Redoxin E4185_02775 PF00403 Heavy-metal-associated domain E4185_02780 PF17967 Pullulanase N2 domain E4185_02780 PF03714 Bacterial pullanase-associated domain E4185_02780 PF18494 Pullulanase Ins domain E4185_02780 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4185_02780 PF11852 Domain of unknown function (DUF3372) E4185_02795 PF02583 Metal-sensitive transcriptional repressor E4185_02800 PF00155 Aminotransferase class I and II E4185_02805 PF03466 LysR substrate binding domain E4185_02805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_02815 PF04055 Radical SAM superfamily E4185_02820 PF11230 Protein of unknown function (DUF3029) E4185_02840 PF01609 Transposase DDE domain E4185_02840 PF13006 Insertion element 4 transposase N-terminal E4185_02850 PF17200 Single Cache domain 2 E4185_02850 PF00672 HAMP domain E4185_02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_02855 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E4185_02855 PF18416 N-acetylglucosamine binding protein domain 2 E4185_02865 PF03466 LysR substrate binding domain E4185_02865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_02870 PF00005 ABC transporter E4185_02870 PF12857 TOBE-like domain E4185_02875 PF00528 Binding-protein-dependent transport system inner membrane component E4185_02925 PF00176 SNF2 family N-terminal domain E4185_02925 PF18337 RapA N-terminal Tudor like domain E4185_02925 PF12137 RNA polymerase recycling family C-terminal E4185_02925 PF18339 RapA N-terminal Tudor like domain 1 E4185_02925 PF00271 Helicase conserved C-terminal domain E4185_02930 PF00849 RNA pseudouridylate synthase E4185_02940 PF00563 EAL domain E4185_02940 PF00990 Diguanylate cyclase, GGDEF domain E4185_02940 PF03707 Bacterial signalling protein N terminal repeat E4185_02950 PF00118 TCP-1/cpn60 chaperonin family E4185_02955 PF00166 Chaperonin 10 Kd subunit E4185_02960 PF01554 MatE E4185_02965 PF04186 FxsA cytoplasmic membrane protein E4185_02970 PF10415 Fumarase C C-terminus E4185_02970 PF00206 Lyase E4185_02975 PF03605 Anaerobic c4-dicarboxylate membrane transporter E4185_02980 PF04262 Glutamate-cysteine ligase E4185_02985 PF00675 Insulinase (Peptidase family M16) E4185_02985 PF05193 Peptidase M16 inactive domain E4185_02990 PF09335 SNARE associated Golgi protein E4185_02995 PF08240 Alcohol dehydrogenase GroES-like domain E4185_02995 PF00107 Zinc-binding dehydrogenase E4185_03025 PF00175 Oxidoreductase NAD-binding domain E4185_03025 PF00970 Oxidoreductase FAD-binding domain E4185_03030 PF03948 Ribosomal protein L9, C-terminal domain E4185_03030 PF01281 Ribosomal protein L9, N-terminal domain E4185_03035 PF01084 Ribosomal protein S18 E4185_03040 PF01250 Ribosomal protein S6 E4185_03045 PF01566 Natural resistance-associated macrophage protein E4185_03060 PF13673 Acetyltransferase (GNAT) domain E4185_03070 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4185_03070 PF00588 SpoU rRNA Methylase family E4185_03075 PF00773 RNB domain E4185_03075 PF17876 Cold shock domain E4185_03075 PF08461 Ribonuclease R winged-helix domain E4185_03075 PF00575 S1 RNA binding domain E4185_03075 PF08206 Ribonuclease B OB domain E4185_03080 PF00990 Diguanylate cyclase, GGDEF domain E4185_03085 PF13006 Insertion element 4 transposase N-terminal E4185_03085 PF01609 Transposase DDE domain E4185_03090 PF02664 S-Ribosylhomocysteinase (LuxS) E4185_03100 PF00543 Nitrogen regulatory protein P-II E4185_03105 PF00795 Carbon-nitrogen hydrolase E4185_03105 PF02540 NAD synthase E4185_03135 PF02401 LytB protein E4185_03140 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_03145 PF01252 Signal peptidase (SPase) II E4185_03150 PF08264 Anticodon-binding domain of tRNA E4185_03150 PF06827 Zinc finger found in FPG and IleRS E4185_03150 PF00133 tRNA synthetases class I (I, L, M and V) E4185_03155 PF01687 Riboflavin kinase E4185_03155 PF06574 FAD synthetase E4185_03160 PF03023 Lipid II flippase MurJ E4185_03165 PF01649 Ribosomal protein S20 E4185_03170 PF01022 Bacterial regulatory protein, arsR family E4185_03175 PF03466 LysR substrate binding domain E4185_03175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_03185 PF06965 Na+/H+ antiporter 1 E4185_03190 PF00303 Thymidylate synthase E4185_03195 PF01790 Prolipoprotein diacylglyceryl transferase E4185_03200 PF01590 GAF domain E4185_03200 PF02896 PEP-utilising enzyme, TIM barrel domain E4185_03200 PF05524 PEP-utilising enzyme, N-terminal E4185_03200 PF00391 PEP-utilising enzyme, mobile domain E4185_03205 PF00293 NUDIX domain E4185_03210 PF02976 DNA mismatch repair enzyme MutH E4185_03220 PF01245 Ribosomal protein L19 E4185_03225 PF01746 tRNA (Guanine-1)-methyltransferase E4185_03230 PF05239 PRC-barrel domain E4185_03230 PF01782 RimM N-terminal domain E4185_03235 PF00886 Ribosomal protein S16 E4185_03240 PF02978 Signal peptide binding domain E4185_03240 PF00448 SRP54-type protein, GTPase domain E4185_03240 PF02881 SRP54-type protein, helical bundle domain E4185_03245 PF01578 Cytochrome C assembly protein E4185_03250 PF01595 Cyclin M transmembrane N-terminal domain E4185_03250 PF03471 Transporter associated domain E4185_03250 PF00571 CBS domain E4185_03255 PF02082 Transcriptional regulator E4185_03260 PF00175 Oxidoreductase NAD-binding domain E4185_03260 PF00042 Globin E4185_03260 PF00970 Oxidoreductase FAD-binding domain E4185_03265 PF08238 Sel1 repeat E4185_03270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E4185_03270 PF00056 lactate/malate dehydrogenase, NAD binding domain E4185_03275 PF00528 Binding-protein-dependent transport system inner membrane component E4185_03280 PF00528 Binding-protein-dependent transport system inner membrane component E4185_03285 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_03290 PF00005 ABC transporter E4185_03295 PF02863 Arginine repressor, C-terminal domain E4185_03295 PF01316 Arginine repressor, DNA binding domain E4185_03300 PF04261 Dyp-type peroxidase family E4185_03305 PF08402 TOBE domain E4185_03305 PF00005 ABC transporter E4185_03320 PF00543 Nitrogen regulatory protein P-II E4185_03335 PF07670 Nucleoside recognition E4185_03335 PF07662 Na+ dependent nucleoside transporter C-terminus E4185_03335 PF01773 Na+ dependent nucleoside transporter N-terminus E4185_03340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_03340 PF03466 LysR substrate binding domain E4185_03345 PF00255 Glutathione peroxidase E4185_03355 PF02595 Glycerate kinase family E4185_03360 PF02447 GntP family permease E4185_03365 PF05651 Putative sugar diacid recognition E4185_03365 PF17853 GGDEF-like domain E4185_03365 PF13556 PucR C-terminal helix-turn-helix domain E4185_03370 PF06062 Uncharacterised protein family (UPF0231) E4185_03390 PF02594 Uncharacterised ACR, YggU family COG1872 E4185_03395 PF02325 YGGT family E4185_03400 PF03807 NADP oxidoreductase coenzyme F420-dependent E4185_03400 PF14748 Pyrroline-5-carboxylate reductase dimerisation E4185_03405 PF01168 Alanine racemase, N-terminal domain E4185_03410 PF00437 Type II/IV secretion system protein E4185_03415 PF00437 Type II/IV secretion system protein E4185_03420 PF03883 Peroxide stress protein YaaA E4185_03425 PF00271 Helicase conserved C-terminal domain E4185_03425 PF00270 DEAD/DEAH box helicase E4185_03430 PF05175 Methyltransferase small domain E4185_03435 PF05525 Branched-chain amino acid transport protein E4185_03450 PF01475 Ferric uptake regulator family E4185_03455 PF01207 Dihydrouridine synthase (Dus) E4185_03470 PF00216 Bacterial DNA-binding protein E4185_03475 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ E4185_03480 PF07238 PilZ domain E4185_03485 PF18073 Rubredoxin metal binding domain E4185_03500 PF18429 Domain of unknown function (DUF5609) E4185_03510 PF11737 Protein of unknown function (DUF3300) E4185_03520 PF01048 Phosphorylase superfamily E4185_03525 PF01676 Metalloenzyme superfamily E4185_03530 PF00591 Glycosyl transferase family, a/b domain E4185_03530 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E4185_03530 PF02885 Glycosyl transferase family, helical bundle domain E4185_03535 PF01791 DeoC/LacD family aldolase E4185_03545 PF07662 Na+ dependent nucleoside transporter C-terminus E4185_03545 PF07670 Nucleoside recognition E4185_03545 PF01773 Na+ dependent nucleoside transporter N-terminus E4185_03550 PF01026 TatD related DNase E4185_03570 PF05958 tRNA (Uracil-5-)-methyltransferase E4185_03570 PF01938 TRAM domain E4185_03575 PF00909 Ammonium Transporter Family E4185_03585 PF01609 Transposase DDE domain E4185_03585 PF05598 Transposase domain (DUF772) E4185_03595 PF14659 Phage integrase, N-terminal SAM-like domain E4185_03595 PF00589 Phage integrase family E4185_03600 PF00589 Phage integrase family E4185_03600 PF02899 Phage integrase, N-terminal SAM-like domain E4185_03610 PF12826 Helix-hairpin-helix motif E4185_03610 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E4185_03610 PF01653 NAD-dependent DNA ligase adenylation domain E4185_03610 PF00533 BRCA1 C Terminus (BRCT) domain E4185_03610 PF03120 NAD-dependent DNA ligase OB-fold domain E4185_03615 PF01381 Helix-turn-helix E4185_03845 PF03739 Lipopolysaccharide export system permease LptF/LptG E4185_03850 PF03739 Lipopolysaccharide export system permease LptF/LptG E4185_03855 PF02789 Cytosol aminopeptidase family, N-terminal domain E4185_03855 PF00883 Cytosol aminopeptidase family, catalytic domain E4185_03860 PF04364 DNA polymerase III chi subunit, HolC E4185_03865 PF10458 Valyl tRNA synthetase tRNA binding arm E4185_03865 PF00133 tRNA synthetases class I (I, L, M and V) E4185_03865 PF08264 Anticodon-binding domain of tRNA E4185_03870 PF00571 CBS domain E4185_03870 PF01595 Cyclin M transmembrane N-terminal domain E4185_03870 PF03471 Transporter associated domain E4185_03875 PF09335 SNARE associated Golgi protein E4185_03880 PF00768 D-alanyl-D-alanine carboxypeptidase E4185_03915 PF02599 Global regulator protein family E4185_03920 PF01842 ACT domain E4185_03920 PF00696 Amino acid kinase family E4185_03920 PF13840 ACT domain E4185_03925 PF01411 tRNA synthetases class II (A) E4185_03925 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4185_03925 PF02272 DHHA1 domain E4185_03930 PF02631 RecX family E4185_03935 PF00154 recA bacterial DNA recombination protein E4185_03940 PF02464 Competence-damaged protein E4185_03950 PF05190 MutS family domain IV E4185_03950 PF05192 MutS domain III E4185_03950 PF05188 MutS domain II E4185_03950 PF01624 MutS domain I E4185_03950 PF00488 MutS domain V E4185_03955 PF02028 BCCT, betaine/carnitine/choline family transporter E4185_03970 PF04222 Protein of unknown function (DUF416) E4185_03975 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4185_03980 PF01476 LysM domain E4185_03980 PF01551 Peptidase family M23 E4185_03980 PF08525 Opacity-associated protein A N-terminal motif E4185_04000 PF01297 Zinc-uptake complex component A periplasmic E4185_04005 PF00005 ABC transporter E4185_04010 PF00950 ABC 3 transport family E4185_04015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_04015 PF03466 LysR substrate binding domain E4185_04025 PF03167 Uracil DNA glycosylase superfamily E4185_04030 PF00892 EamA-like transporter family E4185_04035 PF01541 GIY-YIG catalytic domain E4185_04050 PF04012 PspA/IM30 family E4185_04055 PF01553 Acyltransferase E4185_04075 PF00578 AhpC/TSA family E4185_04085 PF00226 DnaJ domain E4185_04085 PF00684 DnaJ central domain E4185_04085 PF01556 DnaJ C terminal domain E4185_04130 PF00521 DNA gyrase/topoisomerase IV, subunit A E4185_04130 PF03989 DNA gyrase C-terminal domain, beta-propeller E4185_04135 PF00204 DNA gyrase B E4185_04135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_04135 PF01751 Toprim domain E4185_04135 PF00986 DNA gyrase B subunit, carboxyl terminus E4185_04145 PF00293 NUDIX domain E4185_04150 PF05728 Uncharacterised protein family (UPF0227) E4185_04155 PF00149 Calcineurin-like phosphoesterase E4185_04160 PF06853 Protein of unknown function (DUF1249) E4185_04165 PF00293 NUDIX domain E4185_04170 PF02321 Outer membrane efflux protein E4185_04175 PF00294 pfkB family carbohydrate kinase E4185_04175 PF01467 Cytidylyltransferase-like E4185_04180 PF03279 Bacterial lipid A biosynthesis acyltransferase E4185_04185 PF02872 5'-nucleotidase, C-terminal domain E4185_04185 PF00149 Calcineurin-like phosphoesterase E4185_04190 PF01810 LysE type translocator E4185_04195 PF00196 Bacterial regulatory proteins, luxR family E4185_04195 PF03472 Autoinducer binding domain E4185_04200 PF00765 Autoinducer synthase E4185_04210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_04210 PF03466 LysR substrate binding domain E4185_04215 PF00773 RNB domain E4185_04215 PF08206 Ribonuclease B OB domain E4185_04215 PF17876 Cold shock domain E4185_04220 PF02378 Phosphotransferase system, EIIC E4185_04220 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4185_04220 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_04225 PF01232 Mannitol dehydrogenase Rossmann domain E4185_04225 PF08125 Mannitol dehydrogenase C-terminal domain E4185_04230 PF05068 Mannitol repressor E4185_04250 PF01544 CorA-like Mg2+ transporter protein E4185_04255 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E4185_04270 PF01773 Na+ dependent nucleoside transporter N-terminus E4185_04270 PF07662 Na+ dependent nucleoside transporter C-terminus E4185_04270 PF07670 Nucleoside recognition E4185_04275 PF00270 DEAD/DEAH box helicase E4185_04275 PF03880 DbpA RNA binding domain E4185_04275 PF00271 Helicase conserved C-terminal domain E4185_04300 PF01040 UbiA prenyltransferase family E4185_04310 PF16582 Middle domain of thiamine pyrophosphate E4185_04310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4185_04310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4185_04315 PF12697 Alpha/beta hydrolase family E4185_04320 PF00378 Enoyl-CoA hydratase/isomerase E4185_04325 PF13378 Enolase C-terminal domain-like E4185_04335 PF01752 Collagenase E4185_04335 PF08453 Peptidase family M9 N-terminal E4185_04340 PF02698 DUF218 domain E4185_04345 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4185_04345 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4185_04355 PF00561 alpha/beta hydrolase fold E4185_04375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_04375 PF12793 Sugar transport-related sRNA regulator N-term E4185_04385 PF01053 Cys/Met metabolism PLP-dependent enzyme E4185_04395 PF00465 Iron-containing alcohol dehydrogenase E4185_04410 PF00106 short chain dehydrogenase E4185_04435 PF00128 Alpha amylase, catalytic domain E4185_04435 PF02903 Alpha amylase, N-terminal ig-like domain E4185_04435 PF16657 Maltogenic Amylase, C-terminal domain E4185_04445 PF00884 Sulfatase E4185_04450 PF02219 Methylenetetrahydrofolate reductase E4185_04465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_04465 PF00672 HAMP domain E4185_04465 PF12729 Four helix bundle sensory module for signal transduction E4185_04470 PF03922 OmpW family E4185_04475 PF17755 UvrA DNA-binding domain E4185_04475 PF00005 ABC transporter E4185_04475 PF17760 UvrA interaction domain E4185_04480 PF00196 Bacterial regulatory proteins, luxR family E4185_04485 PF00436 Single-strand binding protein family E4185_04505 PF00313 'Cold-shock' DNA-binding domain E4185_04510 PF00672 HAMP domain E4185_04510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_04510 PF00512 His Kinase A (phospho-acceptor) domain E4185_04515 PF00486 Transcriptional regulatory protein, C terminal E4185_04515 PF00072 Response regulator receiver domain E4185_04525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_04525 PF00672 HAMP domain E4185_04535 PF00990 Diguanylate cyclase, GGDEF domain E4185_04535 PF08448 PAS fold E4185_04540 PF00543 Nitrogen regulatory protein P-II E4185_04545 PF00909 Ammonium Transporter Family E4185_04555 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_04565 PF00912 Transglycosylase E4185_04565 PF17092 Penicillin-binding protein OB-like domain E4185_04565 PF00905 Penicillin binding protein transpeptidase domain E4185_04575 PF12705 PD-(D/E)XK nuclease superfamily E4185_04575 PF00580 UvrD/REP helicase N-terminal domain E4185_04575 PF13361 UvrD-like helicase C-terminal domain E4185_04580 PF17946 RecC C-terminal domain E4185_04585 PF07681 DoxX E4185_04590 PF02678 Pirin E4185_04590 PF17954 Quercetinase C-terminal cupin domain E4185_04600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_04600 PF03466 LysR substrate binding domain E4185_04610 PF07702 UTRA domain E4185_04610 PF00392 Bacterial regulatory proteins, gntR family E4185_04625 PF00528 Binding-protein-dependent transport system inner membrane component E4185_04635 PF00005 ABC transporter E4185_04635 PF08402 TOBE domain E4185_04645 PF00990 Diguanylate cyclase, GGDEF domain E4185_04660 PF06719 AraC-type transcriptional regulator N-terminus E4185_04660 PF12833 Helix-turn-helix domain E4185_04665 PF00583 Acetyltransferase (GNAT) family E4185_04670 PF00199 Catalase E4185_04670 PF06628 Catalase-related immune-responsive E4185_04695 PF01594 AI-2E family transporter E4185_04710 PF04371 Porphyromonas-type peptidyl-arginine deiminase E4185_04715 PF13416 Bacterial extracellular solute-binding protein E4185_04720 PF04371 Porphyromonas-type peptidyl-arginine deiminase E4185_04725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_04725 PF03466 LysR substrate binding domain E4185_04730 PF02954 Bacterial regulatory protein, Fis family E4185_04730 PF00989 PAS fold E4185_04730 PF00158 Sigma-54 interaction domain E4185_04735 PF00391 PEP-utilising enzyme, mobile domain E4185_04735 PF03610 PTS system fructose IIA component E4185_04735 PF05524 PEP-utilising enzyme, N-terminal E4185_04735 PF00381 PTS HPr component phosphorylation site E4185_04740 PF02734 DAK2 domain E4185_04745 PF02733 Dak1 domain E4185_04750 PF00860 Permease family E4185_04755 PF03079 ARD/ARD' family E4185_04795 PF00009 Elongation factor Tu GTP binding domain E4185_04795 PF03144 Elongation factor Tu domain 2 E4185_04795 PF03143 Elongation factor Tu C-terminal domain E4185_04800 PF03144 Elongation factor Tu domain 2 E4185_04800 PF00009 Elongation factor Tu GTP binding domain E4185_04800 PF03764 Elongation factor G, domain IV E4185_04800 PF00679 Elongation factor G C-terminus E4185_04800 PF14492 Elongation Factor G, domain II E4185_04805 PF00177 Ribosomal protein S7p/S5e E4185_04810 PF00164 Ribosomal protein S12/S23 E4185_04815 PF04077 DsrH like protein E4185_04820 PF02635 DsrE/DsrF-like family E4185_04825 PF02635 DsrE/DsrF-like family E4185_04830 PF01042 Endoribonuclease L-PSP E4185_04835 PF13309 HTH domain E4185_04835 PF08348 YheO-like PAS domain E4185_04840 PF04983 RNA polymerase Rpb1, domain 3 E4185_04840 PF04997 RNA polymerase Rpb1, domain 1 E4185_04840 PF05000 RNA polymerase Rpb1, domain 4 E4185_04840 PF00623 RNA polymerase Rpb1, domain 2 E4185_04840 PF04998 RNA polymerase Rpb1, domain 5 E4185_04845 PF04560 RNA polymerase Rpb2, domain 7 E4185_04845 PF00562 RNA polymerase Rpb2, domain 6 E4185_04845 PF04563 RNA polymerase beta subunit E4185_04845 PF10385 RNA polymerase beta subunit external 1 domain E4185_04845 PF04565 RNA polymerase Rpb2, domain 3 E4185_04845 PF04561 RNA polymerase Rpb2, domain 2 E4185_04850 PF16320 Ribosomal protein L7/L12 dimerisation domain E4185_04850 PF00542 Ribosomal protein L7/L12 C-terminal domain E4185_04855 PF00466 Ribosomal protein L10 E4185_04860 PF00687 Ribosomal protein L1p/L10e family E4185_04865 PF03946 Ribosomal protein L11, N-terminal domain E4185_04865 PF00298 Ribosomal protein L11, RNA binding domain E4185_04870 PF00467 KOW motif E4185_04870 PF02357 Transcription termination factor nusG E4185_04875 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4185_04885 PF03143 Elongation factor Tu C-terminal domain E4185_04885 PF03144 Elongation factor Tu domain 2 E4185_04885 PF00009 Elongation factor Tu GTP binding domain E4185_04900 PF00485 Phosphoribulokinase / Uridine kinase family E4185_04905 PF03099 Biotin/lipoate A/B protein ligase family E4185_04905 PF02237 Biotin protein ligase C terminal domain E4185_04905 PF08279 HTH domain E4185_04910 PF01565 FAD binding domain E4185_04910 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4185_04915 PF02080 TrkA-C domain E4185_04915 PF02254 TrkA-N domain E4185_04920 PF02386 Cation transport protein E4185_04925 PF01751 Toprim domain E4185_04925 PF01131 DNA topoisomerase E4185_04930 PF03264 NapC/NirT cytochrome c family, N-terminal region E4185_04950 PF00072 Response regulator receiver domain E4185_04950 PF00486 Transcriptional regulatory protein, C terminal E4185_04965 PF01794 Ferric reductase like transmembrane component E4185_04970 PF00174 Oxidoreductase molybdopterin binding domain E4185_04980 PF06496 Protein of unknown function (DUF1097) E4185_04985 PF00072 Response regulator receiver domain E4185_04985 PF00158 Sigma-54 interaction domain E4185_04995 PF00512 His Kinase A (phospho-acceptor) domain E4185_04995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_05015 PF00571 CBS domain E4185_05015 PF00478 IMP dehydrogenase / GMP reductase domain E4185_05030 PF01037 Lrp/AsnC ligand binding domain E4185_05035 PF03590 Aspartate-ammonia ligase E4185_05040 PF10431 C-terminal, D2-small domain, of ClpB protein E4185_05040 PF02861 Clp amino terminal domain, pathogenicity island component E4185_05040 PF17871 AAA lid domain E4185_05040 PF00004 ATPase family associated with various cellular activities (AAA) E4185_05040 PF07724 AAA domain (Cdc48 subfamily) E4185_05050 PF00849 RNA pseudouridylate synthase E4185_05050 PF01479 S4 domain E4185_05055 PF13525 Outer membrane lipoprotein E4185_05060 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_05060 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_05065 PF00375 Sodium:dicarboxylate symporter family E4185_05070 PF03313 Serine dehydratase alpha chain E4185_05075 PF02233 NAD(P) transhydrogenase beta subunit E4185_05080 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E4185_05080 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4185_05080 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4185_05085 PF00465 Iron-containing alcohol dehydrogenase E4185_05090 PF12833 Helix-turn-helix domain E4185_05090 PF06719 AraC-type transcriptional regulator N-terminus E4185_05095 PF08212 Lipocalin-like domain E4185_05100 PF02743 Cache domain E4185_05100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_05100 PF00672 HAMP domain E4185_05110 PF02666 Phosphatidylserine decarboxylase E4185_05125 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4185_05125 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4185_05130 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E4185_05130 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E4185_05135 PF02863 Arginine repressor, C-terminal domain E4185_05135 PF01316 Arginine repressor, DNA binding domain E4185_05140 PF03606 C4-dicarboxylate anaerobic carrier E4185_05145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4185_05145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4185_05150 PF00696 Amino acid kinase family E4185_05170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_05170 PF02743 Cache domain E4185_05170 PF00672 HAMP domain E4185_05175 PF02653 Branched-chain amino acid transport system / permease component E4185_05180 PF00005 ABC transporter E4185_05185 PF13407 Periplasmic binding protein domain E4185_05190 PF02929 Beta galactosidase small chain E4185_05190 PF16353 Domain of unknown function(DUF4981) E4185_05190 PF02837 Glycosyl hydrolases family 2, sugar binding domain E4185_05190 PF02836 Glycosyl hydrolases family 2, TIM barrel domain E4185_05190 PF00703 Glycosyl hydrolases family 2 E4185_05195 PF00356 Bacterial regulatory proteins, lacI family E4185_05205 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E4185_05205 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E4185_05210 PF00288 GHMP kinases N terminal domain E4185_05210 PF08544 GHMP kinases C terminal E4185_05210 PF10509 Galactokinase galactose-binding signature E4185_05215 PF01263 Aldose 1-epimerase E4185_05220 PF00248 Aldo/keto reductase family E4185_05225 PF02673 Bacitracin resistance protein BacA E4185_05230 PF12973 ChrR Cupin-like domain E4185_05235 PF04542 Sigma-70 region 2 E4185_05235 PF04545 Sigma-70, region 4 E4185_05245 PF00750 tRNA synthetases class I (R) E4185_05245 PF03485 Arginyl tRNA synthetase N terminal domain E4185_05245 PF05746 DALR anticodon binding domain E4185_05255 PF00227 Proteasome subunit E4185_05260 PF00004 ATPase family associated with various cellular activities (AAA) E4185_05260 PF07724 AAA domain (Cdc48 subfamily) E4185_05260 PF10431 C-terminal, D2-small domain, of ClpB protein E4185_05265 PF07690 Major Facilitator Superfamily E4185_05270 PF03466 LysR substrate binding domain E4185_05270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_05280 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_05285 PF00005 ABC transporter E4185_05300 PF04324 BFD-like [2Fe-2S] binding domain E4185_05300 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4185_05300 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_05300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4185_05300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4185_05305 PF13806 Rieske-like [2Fe-2S] domain E4185_05310 PF01226 Formate/nitrite transporter E4185_05315 PF10414 Sirohaem synthase dimerisation region E4185_05315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4185_05315 PF14824 Sirohaem biosynthesis protein central E4185_05320 PF01769 Divalent cation transporter E4185_05320 PF00571 CBS domain E4185_05320 PF03448 MgtE intracellular N domain E4185_05325 PF03737 Aldolase/RraA E4185_05330 PF02592 Putative vitamin uptake transporter E4185_05340 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E4185_05345 PF00034 Cytochrome c E4185_05350 PF00270 DEAD/DEAH box helicase E4185_05350 PF00570 HRDC domain E4185_05350 PF16124 RecQ zinc-binding E4185_05350 PF09382 RQC domain E4185_05350 PF00271 Helicase conserved C-terminal domain E4185_05355 PF09382 RQC domain E4185_05355 PF16124 RecQ zinc-binding E4185_05355 PF00570 HRDC domain E4185_05355 PF00271 Helicase conserved C-terminal domain E4185_05355 PF00270 DEAD/DEAH box helicase E4185_05360 PF03061 Thioesterase superfamily E4185_05380 PF03473 MOSC domain E4185_05380 PF03475 3-alpha domain E4185_05385 PF00528 Binding-protein-dependent transport system inner membrane component E4185_05390 PF00528 Binding-protein-dependent transport system inner membrane component E4185_05395 PF08402 TOBE domain E4185_05395 PF00005 ABC transporter E4185_05400 PF13416 Bacterial extracellular solute-binding protein E4185_05405 PF13416 Bacterial extracellular solute-binding protein E4185_05410 PF00202 Aminotransferase class-III E4185_05415 PF00120 Glutamine synthetase, catalytic domain E4185_05420 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4185_05435 PF05981 CreA protein E4185_05440 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4185_05440 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4185_05445 PF00012 Hsp70 protein E4185_05460 PF00128 Alpha amylase, catalytic domain E4185_05460 PF02903 Alpha amylase, N-terminal ig-like domain E4185_05475 PF05958 tRNA (Uracil-5-)-methyltransferase E4185_05480 PF00072 Response regulator receiver domain E4185_05480 PF00486 Transcriptional regulatory protein, C terminal E4185_05485 PF00512 His Kinase A (phospho-acceptor) domain E4185_05485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_05485 PF00672 HAMP domain E4185_05495 PF00390 Malic enzyme, N-terminal domain E4185_05495 PF03949 Malic enzyme, NAD binding domain E4185_05500 PF13460 NAD(P)H-binding E4185_05500 PF11066 Protein of unknown function (DUF2867) E4185_05505 PF01197 Ribosomal protein L31 E4185_05510 PF17764 3′ DNA-binding domain (3′BD) E4185_05510 PF18074 Primosomal protein N C-terminal domain E4185_05510 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4185_05510 PF00270 DEAD/DEAH box helicase E4185_05510 PF00271 Helicase conserved C-terminal domain E4185_05515 PF01389 OmpA-like transmembrane domain E4185_05515 PF00691 OmpA family E4185_05525 PF00585 C-terminal regulatory domain of Threonine dehydratase E4185_05525 PF00291 Pyridoxal-phosphate dependent enzyme E4185_05530 PF00920 Dehydratase family E4185_05535 PF01063 Amino-transferase class IV E4185_05545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4185_05545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4185_05545 PF00205 Thiamine pyrophosphate enzyme, central domain E4185_05555 PF13335 Magnesium chelatase, subunit ChlI C-terminal E4185_05555 PF01078 Magnesium chelatase, subunit ChlI E4185_05560 PF01553 Acyltransferase E4185_05565 PF01553 Acyltransferase E4185_05570 PF04463 Protein of unknown function (DUF523) E4185_05580 PF00857 Isochorismatase family E4185_05585 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4185_05585 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E4185_05595 PF00005 ABC transporter E4185_05600 PF00528 Binding-protein-dependent transport system inner membrane component E4185_05605 PF01323 DSBA-like thioredoxin domain E4185_05610 PF01636 Phosphotransferase enzyme family E4185_05615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase E4185_05615 PF12801 4Fe-4S binding domain E4185_05615 PF13746 4Fe-4S dicluster domain E4185_05620 PF06288 Protein of unknown function (DUF1040) E4185_05625 PF00563 EAL domain E4185_05625 PF00990 Diguanylate cyclase, GGDEF domain E4185_05625 PF00360 Phytochrome region E4185_05625 PF01590 GAF domain E4185_05630 PF00376 MerR family regulatory protein E4185_05630 PF09278 MerR, DNA binding E4185_05635 PF00403 Heavy-metal-associated domain E4185_05640 PF00156 Phosphoribosyl transferase domain E4185_05645 PF03725 3' exoribonuclease family, domain 2 E4185_05645 PF01138 3' exoribonuclease family, domain 1 E4185_05650 PF08340 Domain of unknown function (DUF1732) E4185_05650 PF03755 YicC-like family, N-terminal region E4185_05660 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E4185_05665 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4185_05670 PF00535 Glycosyl transferase family 2 E4185_05675 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4185_05680 PF01467 Cytidylyltransferase-like E4185_05685 PF04393 Protein of unknown function (DUF535) E4185_05690 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E4185_05690 PF06827 Zinc finger found in FPG and IleRS E4185_05690 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E4185_05700 PF00471 Ribosomal protein L33 E4185_05705 PF00830 Ribosomal L28 family E4185_05715 PF02441 Flavoprotein E4185_05715 PF04127 DNA / pantothenate metabolism flavoprotein E4185_05725 PF05598 Transposase domain (DUF772) E4185_05725 PF01609 Transposase DDE domain E4185_05735 PF00873 AcrB/AcrD/AcrF family E4185_05745 PF05598 Transposase domain (DUF772) E4185_05745 PF01609 Transposase DDE domain E4185_05750 PF00692 dUTPase E4185_05760 PF00440 Bacterial regulatory proteins, tetR family E4185_05765 PF00924 Mechanosensitive ion channel E4185_05765 PF05552 Conserved TM helix E4185_05775 PF00342 Phosphoglucose isomerase E4185_05780 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E4185_05780 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E4185_05785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_05785 PF03466 LysR substrate binding domain E4185_05795 PF13607 Succinyl-CoA ligase like flavodoxin domain E4185_05795 PF13380 CoA binding domain E4185_05795 PF00583 Acetyltransferase (GNAT) family E4185_05825 PF01177 Asp/Glu/Hydantoin racemase E4185_05830 PF00593 TonB dependent receptor E4185_05830 PF07715 TonB-dependent Receptor Plug Domain E4185_05835 PF00731 AIR carboxylase E4185_05840 PF02222 ATP-grasp domain E4185_05840 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E4185_05845 PF07690 Major Facilitator Superfamily E4185_05850 PF00072 Response regulator receiver domain E4185_05850 PF04397 LytTr DNA-binding domain E4185_05855 PF07694 5TMR of 5TMR-LYT E4185_05855 PF06580 Histidine kinase E4185_05855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_05860 PF01810 LysE type translocator E4185_05865 PF07690 Major Facilitator Superfamily E4185_05875 PF00210 Ferritin-like domain E4185_05880 PF00990 Diguanylate cyclase, GGDEF domain E4185_05880 PF05230 MASE2 domain E4185_05885 PF07055 Enoyl reductase FAD binding domain E4185_05885 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4185_05885 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4185_05890 PF00582 Universal stress protein family E4185_05895 PF00579 tRNA synthetases class I (W and Y) E4185_05900 PF03466 LysR substrate binding domain E4185_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_05920 PF00892 EamA-like transporter family E4185_05935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4185_05945 PF00625 Guanylate kinase E4185_05950 PF01192 RNA polymerase Rpb6 E4185_05955 PF13291 ACT domain E4185_05955 PF04607 Region found in RelA / SpoT proteins E4185_05955 PF02824 TGS domain E4185_05960 PF12105 SpoU, rRNA methylase, C-terminal E4185_05960 PF00588 SpoU rRNA Methylase family E4185_05965 PF12146 Serine aminopeptidase, S33 E4185_06005 PF00440 Bacterial regulatory proteins, tetR family E4185_06010 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_06015 PF00873 AcrB/AcrD/AcrF family E4185_06020 PF00512 His Kinase A (phospho-acceptor) domain E4185_06020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06020 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_06025 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_06025 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_06035 PF00107 Zinc-binding dehydrogenase E4185_06035 PF08240 Alcohol dehydrogenase GroES-like domain E4185_06040 PF12146 Serine aminopeptidase, S33 E4185_06045 PF01638 HxlR-like helix-turn-helix E4185_06055 PF03814 Potassium-transporting ATPase A subunit E4185_06065 PF02669 K+-transporting ATPase, c chain E4185_06070 PF13492 GAF domain E4185_06070 PF13493 Domain of unknown function (DUF4118) E4185_06070 PF00512 His Kinase A (phospho-acceptor) domain E4185_06070 PF02702 Osmosensitive K+ channel His kinase sensor domain E4185_06070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06075 PF00072 Response regulator receiver domain E4185_06075 PF00486 Transcriptional regulatory protein, C terminal E4185_06080 PF07690 Major Facilitator Superfamily E4185_06100 PF00011 Hsp20/alpha crystallin family E4185_06105 PF00011 Hsp20/alpha crystallin family E4185_06110 PF12706 Beta-lactamase superfamily domain E4185_06115 PF12833 Helix-turn-helix domain E4185_06115 PF01965 DJ-1/PfpI family E4185_06120 PF13280 WYL domain E4185_06120 PF08279 HTH domain E4185_06130 PF18053 DNA gyrase B subunit insert domain E4185_06130 PF00986 DNA gyrase B subunit, carboxyl terminus E4185_06130 PF00204 DNA gyrase B E4185_06130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06130 PF01751 Toprim domain E4185_06135 PF02463 RecF/RecN/SMC N terminal domain E4185_06140 PF02768 DNA polymerase III beta subunit, C-terminal domain E4185_06140 PF02767 DNA polymerase III beta subunit, central domain E4185_06140 PF00712 DNA polymerase III beta subunit, N-terminal domain E4185_06145 PF11638 DnaA N-terminal domain E4185_06145 PF00308 Bacterial dnaA protein E4185_06145 PF08299 Bacterial dnaA protein helix-turn-helix E4185_06150 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_06155 PF00528 Binding-protein-dependent transport system inner membrane component E4185_06165 PF00468 Ribosomal protein L34 E4185_06170 PF00825 Ribonuclease P E4185_06175 PF01809 Putative membrane protein insertion efficiency factor E4185_06180 PF02096 60Kd inner membrane protein E4185_06180 PF14849 YidC periplasmic domain E4185_06185 PF12631 MnmE helical domain E4185_06185 PF01926 50S ribosome-binding GTPase E4185_06185 PF10396 GTP-binding protein TrmE N-terminus E4185_06190 PF01032 FecCD transport family E4185_06195 PF01497 Periplasmic binding protein E4185_06200 PF00005 ABC transporter E4185_06205 PF00005 ABC transporter E4185_06210 PF07715 TonB-dependent Receptor Plug Domain E4185_06210 PF00593 TonB dependent receptor E4185_06215 PF00258 Flavodoxin E4185_06220 PF13932 GidA associated domain E4185_06220 PF01134 Glucose inhibited division protein A E4185_06225 PF02527 rRNA small subunit methyltransferase G E4185_06230 PF13614 AAA domain E4185_06235 PF02195 ParB-like nuclease domain E4185_06235 PF17762 HTH domain found in ParB protein E4185_06245 PF00119 ATP synthase A chain E4185_06250 PF00137 ATP synthase subunit C E4185_06255 PF00430 ATP synthase B/B' CF(0) E4185_06260 PF00213 ATP synthase delta (OSCP) subunit E4185_06265 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4185_06265 PF00306 ATP synthase alpha/beta chain, C terminal domain E4185_06265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4185_06270 PF00231 ATP synthase E4185_06275 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4185_06275 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4185_06280 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E4185_06280 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E4185_06285 PF12804 MobA-like NTP transferase domain E4185_06285 PF14602 Hexapeptide repeat of succinyl-transferase E4185_06285 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_06290 PF06123 Inner membrane protein CreD E4185_06295 PF00905 Penicillin binding protein transpeptidase domain E4185_06300 PF00672 HAMP domain E4185_06300 PF00512 His Kinase A (phospho-acceptor) domain E4185_06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06305 PF00072 Response regulator receiver domain E4185_06305 PF00486 Transcriptional regulatory protein, C terminal E4185_06310 PF08220 DeoR-like helix-turn-helix domain E4185_06310 PF00455 DeoR C terminal sensor domain E4185_06315 PF01380 SIS domain E4185_06325 PF05598 Transposase domain (DUF772) E4185_06325 PF01609 Transposase DDE domain E4185_06335 PF00196 Bacterial regulatory proteins, luxR family E4185_06335 PF03472 Autoinducer binding domain E4185_06345 PF01618 MotA/TolQ/ExbB proton channel family E4185_06350 PF01618 MotA/TolQ/ExbB proton channel family E4185_06355 PF02472 Biopolymer transport protein ExbD/TolR E4185_06360 PF03544 Gram-negative bacterial TonB protein C-terminal E4185_06395 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4185_06400 PF07969 Amidohydrolase family E4185_06405 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E4185_06410 PF01209 ubiE/COQ5 methyltransferase family E4185_06415 PF02036 SCP-2 sterol transfer family E4185_06420 PF03109 ABC1 family E4185_06425 PF02416 mttA/Hcf106 family E4185_06430 PF02416 mttA/Hcf106 family E4185_06435 PF00902 Sec-independent protein translocase protein (TatC) E4185_06440 PF01026 TatD related DNase E4185_06445 PF00490 Delta-aminolevulinic acid dehydratase E4185_06450 PF01432 Peptidase family M3 E4185_06455 PF00990 Diguanylate cyclase, GGDEF domain E4185_06455 PF03707 Bacterial signalling protein N terminal repeat E4185_06455 PF00563 EAL domain E4185_06460 PF04445 Putative SAM-dependent methyltransferase E4185_06475 PF02541 Ppx/GppA phosphatase family E4185_06480 PF00271 Helicase conserved C-terminal domain E4185_06480 PF00270 DEAD/DEAH box helicase E4185_06485 PF00085 Thioredoxin E4185_06490 PF07497 Rho termination factor, RNA-binding domain E4185_06490 PF07498 Rho termination factor, N-terminal domain E4185_06490 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4185_06500 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E4185_06505 PF00175 Oxidoreductase NAD-binding domain E4185_06510 PF04380 Membrane fusogenic activity E4185_06515 PF12262 Bacterial virulence factor lipase N-terminal E4185_06520 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E4185_06520 PF01694 Rhomboid family E4185_06525 PF00581 Rhodanese-like domain E4185_06535 PF12833 Helix-turn-helix domain E4185_06540 PF00005 ABC transporter E4185_06545 PF00005 ABC transporter E4185_06545 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4185_06550 PF11862 Domain of unknown function (DUF3382) E4185_06550 PF02653 Branched-chain amino acid transport system / permease component E4185_06555 PF02653 Branched-chain amino acid transport system / permease component E4185_06560 PF13458 Periplasmic binding protein E4185_06565 PF00356 Bacterial regulatory proteins, lacI family E4185_06570 PF00158 Sigma-54 interaction domain E4185_06570 PF01590 GAF domain E4185_06575 PF00301 Rubredoxin E4185_06575 PF00753 Metallo-beta-lactamase superfamily E4185_06575 PF00258 Flavodoxin E4185_06580 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_06580 PF18113 Rubredoxin binding C-terminal domain E4185_06590 PF12801 4Fe-4S binding domain E4185_06600 PF01212 Beta-eliminating lyase E4185_06605 PF03222 Tryptophan/tyrosine permease family E4185_06620 PF01609 Transposase DDE domain E4185_06620 PF05598 Transposase domain (DUF772) E4185_06645 PF11008 Protein of unknown function (DUF2846) E4185_06650 PF02092 Glycyl-tRNA synthetase beta subunit E4185_06650 PF05746 DALR anticodon binding domain E4185_06655 PF02091 Glycyl-tRNA synthetase alpha subunit E4185_06660 PF03352 Methyladenine glycosylase E4185_06690 PF00691 OmpA family E4185_06690 PF13488 Glycine zipper E4185_06695 PF01042 Endoribonuclease L-PSP E4185_06700 PF01206 Sulfurtransferase TusA E4185_06720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06720 PF00672 HAMP domain E4185_06720 PF00512 His Kinase A (phospho-acceptor) domain E4185_06725 PF00072 Response regulator receiver domain E4185_06725 PF00486 Transcriptional regulatory protein, C terminal E4185_06730 PF00108 Thiolase, N-terminal domain E4185_06730 PF02803 Thiolase, C-terminal domain E4185_06735 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4185_06735 PF00378 Enoyl-CoA hydratase/isomerase E4185_06735 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4185_06740 PF13193 AMP-binding enzyme C-terminal domain E4185_06740 PF00501 AMP-binding enzyme E4185_06745 PF00557 Metallopeptidase family M24 E4185_06750 PF01205 Uncharacterized protein family UPF0029 E4185_06750 PF09186 Domain of unknown function (DUF1949) E4185_06755 PF02386 Cation transport protein E4185_06760 PF12724 Flavodoxin domain E4185_06790 PF00899 ThiF family E4185_06795 PF02657 Fe-S metabolism associated domain E4185_06800 PF00266 Aminotransferase class-V E4185_06805 PF13361 UvrD-like helicase C-terminal domain E4185_06805 PF00580 UvrD/REP helicase N-terminal domain E4185_06810 PF13188 PAS domain E4185_06810 PF03707 Bacterial signalling protein N terminal repeat E4185_06810 PF00990 Diguanylate cyclase, GGDEF domain E4185_06810 PF00563 EAL domain E4185_06820 PF00107 Zinc-binding dehydrogenase E4185_06820 PF08240 Alcohol dehydrogenase GroES-like domain E4185_06825 PF00155 Aminotransferase class I and II E4185_06830 PF08360 QacR-like protein, C-terminal region E4185_06830 PF00440 Bacterial regulatory proteins, tetR family E4185_06835 PF01370 NAD dependent epimerase/dehydratase family E4185_06840 PF13439 Glycosyltransferase Family 4 E4185_06845 PF04932 O-Antigen ligase E4185_06860 PF08240 Alcohol dehydrogenase GroES-like domain E4185_06860 PF00107 Zinc-binding dehydrogenase E4185_06875 PF03748 Flagellar basal body-associated protein FliL E4185_06880 PF04345 Chorismate lyase E4185_06885 PF01040 UbiA prenyltransferase family E4185_06890 PF13006 Insertion element 4 transposase N-terminal E4185_06890 PF01609 Transposase DDE domain E4185_06895 PF01553 Acyltransferase E4185_06900 PF01726 LexA DNA binding domain E4185_06900 PF00717 Peptidase S24-like E4185_06915 PF01554 MatE E4185_06920 PF00588 SpoU rRNA Methylase family E4185_06925 PF16527 Two-component sensor protein CpxA, periplasmic domain E4185_06925 PF00672 HAMP domain E4185_06925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_06925 PF00512 His Kinase A (phospho-acceptor) domain E4185_06930 PF00486 Transcriptional regulatory protein, C terminal E4185_06930 PF00072 Response regulator receiver domain E4185_06935 PF16916 Dimerisation domain of Zinc Transporter E4185_06935 PF01545 Cation efflux family E4185_06940 PF06426 Serine acetyltransferase, N-terminal E4185_06940 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_06950 PF06005 Cell division protein ZapB E4185_06965 PF00476 DNA polymerase family A E4185_06965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4185_06965 PF01367 5'-3' exonuclease, C-terminal SAM fold E4185_06965 PF01612 3'-5' exonuclease E4185_06970 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_07010 PF00356 Bacterial regulatory proteins, lacI family E4185_07015 PF02929 Beta galactosidase small chain E4185_07015 PF00703 Glycosyl hydrolases family 2 E4185_07015 PF16353 Domain of unknown function(DUF4981) E4185_07015 PF02837 Glycosyl hydrolases family 2, sugar binding domain E4185_07015 PF02836 Glycosyl hydrolases family 2, TIM barrel domain E4185_07020 PF04074 YhcH/YjgK/YiaL E4185_07025 PF13520 Amino acid permease E4185_07030 PF01588 Putative tRNA binding domain E4185_07035 PF13520 Amino acid permease E4185_07040 PF13593 SBF-like CPA transporter family (DUF4137) E4185_07045 PF12867 DinB superfamily E4185_07045 PF03781 Sulfatase-modifying factor enzyme 1 E4185_07055 PF00756 Putative esterase E4185_07060 PF00107 Zinc-binding dehydrogenase E4185_07060 PF08240 Alcohol dehydrogenase GroES-like domain E4185_07065 PF03466 LysR substrate binding domain E4185_07065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_07070 PF04389 Peptidase family M28 E4185_07070 PF04151 Bacterial pre-peptidase C-terminal domain E4185_07095 PF00580 UvrD/REP helicase N-terminal domain E4185_07095 PF13361 UvrD-like helicase C-terminal domain E4185_07115 PF01609 Transposase DDE domain E4185_07130 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_07130 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_07140 PF14001 YdfZ protein E4185_07160 PF06206 CpeT/CpcT family (DUF1001) E4185_07165 PF04143 Sulphur transport E4185_07170 PF01810 LysE type translocator E4185_07175 PF12833 Helix-turn-helix domain E4185_07180 PF00892 EamA-like transporter family E4185_07190 PF00171 Aldehyde dehydrogenase family E4185_07195 PF07883 Cupin domain E4185_07195 PF01381 Helix-turn-helix E4185_07205 PF00171 Aldehyde dehydrogenase family E4185_07210 PF00958 GMP synthase C terminal domain E4185_07210 PF02540 NAD synthase E4185_07210 PF00117 Glutamine amidotransferase class-I E4185_07215 PF03466 LysR substrate binding domain E4185_07215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_07220 PF00294 pfkB family carbohydrate kinase E4185_07225 PF02082 Transcriptional regulator E4185_07240 PF02646 RmuC family E4185_07245 PF02386 Cation transport protein E4185_07250 PF02254 TrkA-N domain E4185_07250 PF02080 TrkA-C domain E4185_07255 PF01029 NusB family E4185_07255 PF01189 16S rRNA methyltransferase RsmB/F E4185_07260 PF00551 Formyl transferase E4185_07260 PF02911 Formyl transferase, C-terminal domain E4185_07265 PF01327 Polypeptide deformylase E4185_07275 PF02481 DNA recombination-mediator protein A E4185_07275 PF17782 DprA winged helix domain E4185_07280 PF04361 Protein of unknown function (DUF494) E4185_07285 PF01396 Topoisomerase DNA binding C4 zinc finger E4185_07290 PF01300 Telomere recombination E4185_07295 PF01218 Coproporphyrinogen III oxidase E4185_07300 PF08501 Shikimate dehydrogenase substrate binding domain E4185_07300 PF01488 Shikimate / quinate 5-dehydrogenase E4185_07300 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4185_07305 PF01926 50S ribosome-binding GTPase E4185_07310 PF00034 Cytochrome c E4185_07315 PF04220 Der GTPase activator (YihI) E4185_07320 PF10675 Protein of unknown function (DUF2489) E4185_07325 PF06969 HemN C-terminal domain E4185_07325 PF04055 Radical SAM superfamily E4185_07330 PF00962 Adenosine/AMP deaminase E4185_07335 PF00158 Sigma-54 interaction domain E4185_07335 PF02954 Bacterial regulatory protein, Fis family E4185_07335 PF00072 Response regulator receiver domain E4185_07340 PF00512 His Kinase A (phospho-acceptor) domain E4185_07340 PF00989 PAS fold E4185_07340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_07350 PF03951 Glutamine synthetase, beta-Grasp domain E4185_07350 PF00120 Glutamine synthetase, catalytic domain E4185_07360 PF03631 Virulence factor BrkB E4185_07365 PF02580 D-Tyr-tRNA(Tyr) deacylase E4185_07375 PF09500 Putative thioesterase (yiiD_Cterm) E4185_07375 PF00583 Acetyltransferase (GNAT) family E4185_07385 PF17191 RecG wedge domain E4185_07385 PF00270 DEAD/DEAH box helicase E4185_07385 PF00271 Helicase conserved C-terminal domain E4185_07395 PF02447 GntP family permease E4185_07400 PF01202 Shikimate kinase E4185_07405 PF00920 Dehydratase family E4185_07410 PF01081 KDPG and KHG aldolase E4185_07415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4185_07415 PF00356 Bacterial regulatory proteins, lacI family E4185_07425 PF01551 Peptidase family M23 E4185_07430 PF01676 Metalloenzyme superfamily E4185_07430 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E4185_07435 PF00581 Rhodanese-like domain E4185_07440 PF02556 Preprotein translocase subunit SecB E4185_07445 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4185_07445 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4185_07450 PF01521 Iron-sulphur cluster biosynthesis E4185_07450 PF01106 NifU-like domain E4185_07455 PF00156 Phosphoribosyl transferase domain E4185_07460 PF00561 alpha/beta hydrolase fold E4185_07475 PF00575 S1 RNA binding domain E4185_07475 PF17674 HHH domain E4185_07475 PF09371 Tex-like protein N-terminal domain E4185_07475 PF16921 Tex protein YqgF-like domain E4185_07480 PF03449 Transcription elongation factor, N-terminal E4185_07480 PF01272 Transcription elongation factor, GreA/GreB, C-term E4185_07485 PF00072 Response regulator receiver domain E4185_07485 PF00486 Transcriptional regulatory protein, C terminal E4185_07490 PF00672 HAMP domain E4185_07490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_07490 PF00512 His Kinase A (phospho-acceptor) domain E4185_07500 PF00338 Ribosomal protein S10p/S20e E4185_07505 PF00297 Ribosomal protein L3 E4185_07510 PF00573 Ribosomal protein L4/L1 family E4185_07515 PF00276 Ribosomal protein L23 E4185_07520 PF00181 Ribosomal Proteins L2, RNA binding domain E4185_07520 PF03947 Ribosomal Proteins L2, C-terminal domain E4185_07525 PF00203 Ribosomal protein S19 E4185_07530 PF00237 Ribosomal protein L22p/L17e E4185_07535 PF07650 KH domain E4185_07535 PF00189 Ribosomal protein S3, C-terminal domain E4185_07540 PF00252 Ribosomal protein L16p/L10e E4185_07545 PF00831 Ribosomal L29 protein E4185_07550 PF00366 Ribosomal protein S17 E4185_07555 PF00238 Ribosomal protein L14p/L23e E4185_07560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4185_07560 PF00467 KOW motif E4185_07565 PF00281 Ribosomal protein L5 E4185_07565 PF00673 ribosomal L5P family C-terminus E4185_07570 PF00253 Ribosomal protein S14p/S29e E4185_07575 PF00410 Ribosomal protein S8 E4185_07580 PF00347 Ribosomal protein L6 E4185_07585 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4185_07590 PF00333 Ribosomal protein S5, N-terminal domain E4185_07590 PF03719 Ribosomal protein S5, C-terminal domain E4185_07595 PF00327 Ribosomal protein L30p/L7e E4185_07600 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4185_07605 PF00344 SecY translocase E4185_07610 PF00444 Ribosomal protein L36 E4185_07615 PF00416 Ribosomal protein S13/S18 E4185_07620 PF00411 Ribosomal protein S11 E4185_07625 PF01479 S4 domain E4185_07625 PF00163 Ribosomal protein S4/S9 N-terminal domain E4185_07630 PF01000 RNA polymerase Rpb3/RpoA insert domain E4185_07630 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4185_07630 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4185_07635 PF01196 Ribosomal protein L17 E4185_07685 PF02254 TrkA-N domain E4185_07685 PF00999 Sodium/hydrogen exchanger family E4185_07690 PF02525 Flavodoxin-like fold E4185_07705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4185_07705 PF00326 Prolyl oligopeptidase family E4185_07730 PF07947 YhhN family E4185_07735 PF07690 Major Facilitator Superfamily E4185_07740 PF13533 Biotin-lipoyl like E4185_07745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_07745 PF03466 LysR substrate binding domain E4185_07755 PF00375 Sodium:dicarboxylate symporter family E4185_07760 PF10678 Protein of unknown function (DUF2492) E4185_07765 PF01914 MarC family integral membrane protein E4185_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_07770 PF03466 LysR substrate binding domain E4185_07775 PF02416 mttA/Hcf106 family E4185_07785 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_07785 PF01464 Transglycosylase SLT domain E4185_07790 PF13091 PLD-like domain E4185_07800 PF00440 Bacterial regulatory proteins, tetR family E4185_07805 PF07226 Protein of unknown function (DUF1422) E4185_07825 PF02881 SRP54-type protein, helical bundle domain E4185_07825 PF00448 SRP54-type protein, GTPase domain E4185_07830 PF00005 ABC transporter E4185_07835 PF18075 FtsX extracellular domain E4185_07840 PF04542 Sigma-70 region 2 E4185_07840 PF04545 Sigma-70, region 4 E4185_07840 PF00140 Sigma-70 factor, region 1.2 E4185_07845 PF00484 Carbonic anhydrase E4185_07850 PF07702 UTRA domain E4185_07850 PF00392 Bacterial regulatory proteins, gntR family E4185_07855 PF01979 Amidohydrolase family E4185_07860 PF00491 Arginase family E4185_07865 PF17392 Urocanase C-terminal domain E4185_07865 PF17391 Urocanase N-terminal domain E4185_07865 PF01175 Urocanase Rossmann-like domain E4185_07870 PF00221 Aromatic amino acid lyase E4185_07875 PF01699 Sodium/calcium exchanger protein E4185_07880 PF00563 EAL domain E4185_07880 PF12792 CSS motif domain associated with EAL E4185_07885 PF17157 Gammaproteobacterial periplasmic sensor domain E4185_07885 PF00990 Diguanylate cyclase, GGDEF domain E4185_07885 PF00563 EAL domain E4185_07915 PF03958 Bacterial type II/III secretion system short domain E4185_07915 PF00263 Bacterial type II and III secretion system protein E4185_07930 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E4185_07930 PF00437 Type II/IV secretion system protein E4185_07935 PF00482 Type II secretion system (T2SS), protein F E4185_07950 PF07963 Prokaryotic N-terminal methylation motif E4185_07950 PF08334 Type II secretion system (T2SS), protein G E4185_07955 PF00114 Pilin (bacterial filament) E4185_07955 PF07963 Prokaryotic N-terminal methylation motif E4185_07985 PF04085 rod shape-determining protein MreC E4185_07990 PF04093 rod shape-determining protein MreD E4185_07995 PF02545 Maf-like protein E4185_08000 PF00575 S1 RNA binding domain E4185_08000 PF10150 Ribonuclease E/G family E4185_08005 PF13502 AsmA-like C-terminal region E4185_08005 PF13116 Protein of unknown function E4185_08010 PF00795 Carbon-nitrogen hydrolase E4185_08015 PF01523 Putative modulator of DNA gyrase E4185_08025 PF01914 MarC family integral membrane protein E4185_08030 PF07690 Major Facilitator Superfamily E4185_08040 PF04228 Putative neutral zinc metallopeptidase E4185_08050 PF13302 Acetyltransferase (GNAT) domain E4185_08060 PF00999 Sodium/hydrogen exchanger family E4185_08065 PF02965 Vitamin B12 dependent methionine synthase, activation domain E4185_08065 PF02574 Homocysteine S-methyltransferase E4185_08065 PF02607 B12 binding domain E4185_08065 PF02310 B12 binding domain E4185_08065 PF00809 Pterin binding enzyme E4185_08070 PF18030 RimK PreATP-grasp domain E4185_08070 PF08443 RimK-like ATP-grasp domain E4185_08080 PF00072 Response regulator receiver domain E4185_08080 PF00486 Transcriptional regulatory protein, C terminal E4185_08095 PF05935 Arylsulfotransferase (ASST) E4185_08095 PF17425 Arylsulfotransferase Ig-like domain E4185_08100 PF01964 Radical SAM ThiC family E4185_08100 PF13667 ThiC-associated domain E4185_08105 PF02581 Thiamine monophosphate synthase E4185_08110 PF00899 ThiF family E4185_08120 PF05690 Thiazole biosynthesis protein ThiG E4185_08125 PF04055 Radical SAM superfamily E4185_08125 PF06968 Biotin and Thiamin Synthesis associated domain E4185_08130 PF00005 ABC transporter E4185_08145 PF13036 Peptidoglycan-synthase activator LpoB E4185_08150 PF00990 Diguanylate cyclase, GGDEF domain E4185_08150 PF17158 Membrane-associated sensor, integral membrane domain E4185_08155 PF06055 Exopolysaccharide synthesis, ExoD E4185_08170 PF08803 Putative mono-oxygenase ydhR E4185_08190 PF07715 TonB-dependent Receptor Plug Domain E4185_08190 PF00593 TonB dependent receptor E4185_08195 PF00583 Acetyltransferase (GNAT) family E4185_08200 PF00267 Gram-negative porin E4185_08205 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E4185_08210 PF03692 Putative zinc- or iron-chelating domain E4185_08215 PF07219 HemY protein N-terminus E4185_08215 PF07719 Tetratricopeptide repeat E4185_08220 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E4185_08225 PF02602 Uroporphyrinogen-III synthase HemD E4185_08235 PF12633 Adenylate cyclase NT domain E4185_08235 PF01295 Adenylate cyclase, class-I E4185_08240 PF02230 Phospholipase/Carboxylesterase E4185_08245 PF01491 Frataxin-like domain E4185_08255 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4185_08255 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4185_08260 PF01678 Diaminopimelate epimerase E4185_08270 PF02899 Phage integrase, N-terminal SAM-like domain E4185_08270 PF00589 Phage integrase family E4185_08275 PF13419 Haloacid dehalogenase-like hydrolase E4185_08285 PF07722 Peptidase C26 E4185_08300 PF04307 LexA-binding, inner membrane-associated putative hydrolase E4185_08305 PF02464 Competence-damaged protein E4185_08305 PF00994 Probable molybdopterin binding domain E4185_08315 PF04204 Homoserine O-succinyltransferase E4185_08325 PF01037 Lrp/AsnC ligand binding domain E4185_08335 PF03594 Benzoate membrane transport protein E4185_08340 PF07883 Cupin domain E4185_08340 PF01381 Helix-turn-helix E4185_08370 PF04363 Protein of unknown function (DUF496) E4185_08380 PF04751 Protein of unknown function (DUF615) E4185_08390 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4185_08395 PF01722 BolA-like protein E4185_08405 PF05494 MlaC protein E4185_08410 PF02470 MlaD protein E4185_08415 PF02405 Permease MlaE E4185_08420 PF00005 ABC transporter E4185_08425 PF01380 SIS domain E4185_08425 PF00571 CBS domain E4185_08435 PF06835 Lipopolysaccharide-assembly, LptC-related E4185_08440 PF03968 OstA-like protein E4185_08445 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4185_08445 PF00005 ABC transporter E4185_08450 PF00309 Sigma-54 factor, Activator interacting domain (AID) E4185_08450 PF04963 Sigma-54 factor, core binding domain E4185_08450 PF04552 Sigma-54, DNA binding domain E4185_08455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4185_08460 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4185_08465 PF03668 P-loop ATPase protein family E4185_08470 PF00381 PTS HPr component phosphorylation site E4185_08480 PF13180 PDZ domain E4185_08485 PF00595 PDZ domain E4185_08485 PF13180 PDZ domain E4185_08495 PF03969 AFG1-like ATPase E4185_08500 PF00572 Ribosomal protein L13 E4185_08505 PF00380 Ribosomal protein S9/S16 E4185_08510 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E4185_08510 PF00355 Rieske [2Fe-2S] domain E4185_08520 PF02167 Cytochrome C1 family E4185_08525 PF02798 Glutathione S-transferase, N-terminal domain E4185_08525 PF00043 Glutathione S-transferase, C-terminal domain E4185_08530 PF04386 Stringent starvation protein B E4185_08535 PF04972 BON domain E4185_08545 PF02021 Uncharacterised protein family UPF0102 E4185_08550 PF04348 LppC putative lipoprotein E4185_08555 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4185_08565 PF02381 MraZ protein, putative antitoxin-like E4185_08570 PF01795 MraW methylase family E4185_08575 PF04999 Cell division protein FtsL E4185_08585 PF01225 Mur ligase family, catalytic domain E4185_08585 PF02875 Mur ligase family, glutamate ligase domain E4185_08585 PF08245 Mur ligase middle domain E4185_08590 PF02875 Mur ligase family, glutamate ligase domain E4185_08590 PF01225 Mur ligase family, catalytic domain E4185_08590 PF08245 Mur ligase middle domain E4185_08595 PF00953 Glycosyl transferase family 4 E4185_08595 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E4185_08605 PF01098 Cell cycle protein E4185_08610 PF03033 Glycosyltransferase family 28 N-terminal domain E4185_08610 PF04101 Glycosyltransferase family 28 C-terminal domain E4185_08615 PF02875 Mur ligase family, glutamate ligase domain E4185_08615 PF01225 Mur ligase family, catalytic domain E4185_08615 PF08245 Mur ligase middle domain E4185_08620 PF03799 Cell division protein FtsQ E4185_08620 PF08478 POTRA domain, FtsQ-type E4185_08625 PF02491 SHS2 domain inserted in FTSA E4185_08630 PF00091 Tubulin/FtsZ family, GTPase domain E4185_08630 PF12327 FtsZ family, C-terminal domain E4185_08635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E4185_08645 PF07517 SecA DEAD-like domain E4185_08645 PF01043 SecA preprotein cross-linking domain E4185_08645 PF07516 SecA Wing and Scaffold domain E4185_08645 PF02810 SEC-C motif E4185_08650 PF00293 NUDIX domain E4185_08655 PF03884 DNA gyrase inhibitor YacG E4185_08660 PF07072 Cell division protein E4185_08665 PF01121 Dephospho-CoA kinase E4185_08670 PF06750 Bacterial Peptidase A24 N-terminal domain E4185_08670 PF01478 Type IV leader peptidase family E4185_08675 PF00482 Type II secretion system (T2SS), protein F E4185_08680 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E4185_08680 PF00437 Type II/IV secretion system protein E4185_08685 PF07963 Prokaryotic N-terminal methylation motif E4185_08695 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E4185_08695 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E4185_08705 PF01510 N-acetylmuramoyl-L-alanine amidase E4185_08710 PF07729 FCD domain E4185_08710 PF00392 Bacterial regulatory proteins, gntR family E4185_08715 PF00456 Transketolase, thiamine diphosphate binding domain E4185_08715 PF17831 Pyruvate dehydrogenase E1 component middle domain E4185_08720 PF00364 Biotin-requiring enzyme E4185_08720 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4185_08720 PF02817 e3 binding domain E4185_08725 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_08725 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_08730 PF00990 Diguanylate cyclase, GGDEF domain E4185_08730 PF05230 MASE2 domain E4185_08745 PF02743 Cache domain E4185_08745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_08745 PF00672 HAMP domain E4185_08755 PF00330 Aconitase family (aconitate hydratase) E4185_08755 PF06434 Aconitate hydratase 2 N-terminus E4185_08755 PF11791 Aconitate B N-terminal domain E4185_08760 PF12792 CSS motif domain associated with EAL E4185_08760 PF00563 EAL domain E4185_08765 PF03466 LysR substrate binding domain E4185_08765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_08770 PF01810 LysE type translocator E4185_08780 PF07683 Cobalamin synthesis protein cobW C-terminal domain E4185_08780 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4185_08795 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4185_08800 PF02152 Dihydroneopterin aldolase E4185_08805 PF02660 Glycerol-3-phosphate acyltransferase E4185_08890 PF13737 Transposase DDE domain E4185_08910 PF00691 OmpA family E4185_08910 PF01389 OmpA-like transmembrane domain E4185_08935 PF00892 EamA-like transporter family E4185_08940 PF01037 Lrp/AsnC ligand binding domain E4185_08945 PF14602 Hexapeptide repeat of succinyl-transferase E4185_08945 PF12464 Maltose acetyltransferase E4185_08950 PF11941 Domain of unknown function (DUF3459) E4185_08950 PF00128 Alpha amylase, catalytic domain E4185_08955 PF00367 phosphotransferase system, EIIB E4185_08955 PF02378 Phosphotransferase system, EIIC E4185_08960 PF00356 Bacterial regulatory proteins, lacI family E4185_08970 PF02378 Phosphotransferase system, EIIC E4185_08975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_08980 PF02378 Phosphotransferase system, EIIC E4185_08980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_08985 PF00232 Glycosyl hydrolase family 1 E4185_08990 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit E4185_08995 PF00480 ROK family E4185_09005 PF00356 Bacterial regulatory proteins, lacI family E4185_09015 PF00710 Asparaginase, N-terminal E4185_09015 PF17763 Glutaminase/Asparaginase C-terminal domain E4185_09030 PF02142 MGS-like domain E4185_09035 PF00210 Ferritin-like domain E4185_09040 PF04324 BFD-like [2Fe-2S] binding domain E4185_09050 PF17176 tRNA-binding domain E4185_09050 PF08351 Domain of unknown function (DUF1726) E4185_09050 PF13718 GNAT acetyltransferase 2 E4185_09050 PF05127 Helicase E4185_09055 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4185_09055 PF02790 Cytochrome C oxidase subunit II, transmembrane domain E4185_09065 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 E4185_09070 PF00510 Cytochrome c oxidase subunit III E4185_09090 PF02628 Cytochrome oxidase assembly protein E4185_09095 PF01040 UbiA prenyltransferase family E4185_09100 PF00171 Aldehyde dehydrogenase family E4185_09105 PF00528 Binding-protein-dependent transport system inner membrane component E4185_09110 PF00528 Binding-protein-dependent transport system inner membrane component E4185_09115 PF08402 TOBE domain E4185_09115 PF00005 ABC transporter E4185_09120 PF13416 Bacterial extracellular solute-binding protein E4185_09125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_09125 PF03466 LysR substrate binding domain E4185_09130 PF03553 Na+/H+ antiporter family E4185_09170 PF00534 Glycosyl transferases group 1 E4185_09170 PF08323 Starch synthase catalytic domain E4185_09175 PF00483 Nucleotidyl transferase E4185_09180 PF05175 Methyltransferase small domain E4185_09180 PF08468 Methyltransferase small domain N-terminal E4185_09185 PF00701 Dihydrodipicolinate synthetase family E4185_09190 PF00990 Diguanylate cyclase, GGDEF domain E4185_09190 PF00360 Phytochrome region E4185_09190 PF00563 EAL domain E4185_09190 PF01590 GAF domain E4185_09195 PF13419 Haloacid dehalogenase-like hydrolase E4185_09200 PF17209 Hfq protein E4185_09210 PF02470 MlaD protein E4185_09215 PF03886 ABC-type transport auxiliary lipoprotein component E4185_09220 PF01389 OmpA-like transmembrane domain E4185_09220 PF00691 OmpA family E4185_09225 PF01609 Transposase DDE domain E4185_09225 PF13006 Insertion element 4 transposase N-terminal E4185_09230 PF00657 GDSL-like Lipase/Acylhydrolase E4185_09240 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E4185_09240 PF01464 Transglycosylase SLT domain E4185_09245 PF04362 Bacterial Fe(2+) trafficking E4185_09250 PF00730 HhH-GPD superfamily base excision DNA repair protein E4185_09250 PF14815 NUDIX domain E4185_09250 PF00633 Helix-hairpin-helix motif E4185_09250 PF10576 Iron-sulfur binding domain of endonuclease III E4185_09255 PF16537 Type II secretion system protein B E4185_09260 PF01471 Putative peptidoglycan binding domain E4185_09260 PF13401 AAA domain E4185_09265 PF01966 HD domain E4185_09265 PF01743 Poly A polymerase head domain E4185_09265 PF12627 Probable RNA and SrmB- binding site of polymerase A E4185_09270 PF01384 Phosphate transporter family E4185_09275 PF01865 Protein of unknown function DUF47 E4185_09285 PF05433 Glycine zipper 2TM domain E4185_09295 PF00557 Metallopeptidase family M24 E4185_09295 PF01321 Creatinase/Prolidase N-terminal domain E4185_09300 PF00392 Bacterial regulatory proteins, gntR family E4185_09305 PF01293 Phosphoenolpyruvate carboxykinase E4185_09310 PF01430 Hsp33 protein E4185_09315 PF01479 S4 domain E4185_09320 PF11356 Type II secretion system protein C E4185_09325 PF03958 Bacterial type II/III secretion system short domain E4185_09325 PF00263 Bacterial type II and III secretion system protein E4185_09330 PF00437 Type II/IV secretion system protein E4185_09335 PF00482 Type II secretion system (T2SS), protein F E4185_09340 PF08334 Type II secretion system (T2SS), protein G E4185_09340 PF07963 Prokaryotic N-terminal methylation motif E4185_09345 PF12019 Type II transport protein GspH E4185_09345 PF07963 Prokaryotic N-terminal methylation motif E4185_09350 PF07963 Prokaryotic N-terminal methylation motif E4185_09350 PF02501 Type II secretion system (T2SS), protein I E4185_09355 PF07963 Prokaryotic N-terminal methylation motif E4185_09355 PF11612 Type II secretion system (T2SS), protein J E4185_09370 PF03934 Type II secretion system (T2SS), protein K E4185_09375 PF05134 Type II secretion system (T2SS), protein L E4185_09375 PF12693 GspL periplasmic domain E4185_09380 PF04612 Type II secretion system (T2SS), protein M E4185_09385 PF01203 Type II secretion system (T2SS), protein N E4185_09390 PF00196 Bacterial regulatory proteins, luxR family E4185_09395 PF00579 tRNA synthetases class I (W and Y) E4185_09395 PF01479 S4 domain E4185_09400 PF13419 Haloacid dehalogenase-like hydrolase E4185_09405 PF00293 NUDIX domain E4185_09410 PF00459 Inositol monophosphatase family E4185_09415 PF03222 Tryptophan/tyrosine permease family E4185_09420 PF01588 Putative tRNA binding domain E4185_09425 PF12833 Helix-turn-helix domain E4185_09425 PF02311 AraC-like ligand binding domain E4185_09430 PF01340 Met Apo-repressor, MetJ E4185_09435 PF01053 Cys/Met metabolism PLP-dependent enzyme E4185_09440 PF03447 Homoserine dehydrogenase, NAD binding domain E4185_09440 PF00696 Amino acid kinase family E4185_09440 PF00742 Homoserine dehydrogenase E4185_09445 PF04172 LrgB-like family E4185_09450 PF03788 LrgA family E4185_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_09455 PF03466 LysR substrate binding domain E4185_09465 PF00392 Bacterial regulatory proteins, gntR family E4185_09465 PF00155 Aminotransferase class I and II E4185_09485 PF04073 Aminoacyl-tRNA editing domain E4185_09490 PF13426 PAS domain E4185_09490 PF08448 PAS fold E4185_09490 PF05231 MASE1 E4185_09490 PF00990 Diguanylate cyclase, GGDEF domain E4185_09490 PF00563 EAL domain E4185_09490 PF08447 PAS fold E4185_09495 PF00311 Phosphoenolpyruvate carboxylase E4185_09500 PF07687 Peptidase dimerisation domain E4185_09500 PF01546 Peptidase family M20/M25/M40 E4185_09505 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4185_09505 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4185_09510 PF00696 Amino acid kinase family E4185_09515 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4185_09515 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4185_09520 PF00764 Arginosuccinate synthase E4185_09525 PF00206 Lyase E4185_09525 PF14698 Argininosuccinate lyase C-terminal E4185_09550 PF12464 Maltose acetyltransferase E4185_09550 PF14602 Hexapeptide repeat of succinyl-transferase E4185_09555 PF13194 Domain of unknown function (DUF4010) E4185_09560 PF00326 Prolyl oligopeptidase family E4185_09560 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4185_09585 PF00672 HAMP domain E4185_09585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_09585 PF02743 Cache domain E4185_09590 PF00520 Ion transport protein E4185_09590 PF00027 Cyclic nucleotide-binding domain E4185_09600 PF00293 NUDIX domain E4185_09600 PF09297 NADH pyrophosphatase zinc ribbon domain E4185_09605 PF01208 Uroporphyrinogen decarboxylase (URO-D) E4185_09610 PF00480 ROK family E4185_09615 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4185_09615 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4185_09620 PF00162 Phosphoglycerate kinase E4185_09625 PF01116 Fructose-bisphosphate aldolase class-II E4185_09650 PF03091 CutA1 divalent ion tolerance protein E4185_09665 PF03466 LysR substrate binding domain E4185_09665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_09670 PF01571 Aminomethyltransferase folate-binding domain E4185_09675 PF03937 Flavinator of succinate dehydrogenase E4185_09685 PF00890 FAD binding domain E4185_09685 PF02910 Fumarate reductase flavoprotein C-term E4185_09690 PF04542 Sigma-70 region 2 E4185_09690 PF08281 Sigma-70, region 4 E4185_09695 PF03873 Anti sigma-E protein RseA, C-terminal domain E4185_09695 PF03872 Anti sigma-E protein RseA, N-terminal domain E4185_09700 PF17188 MucB/RseB C-terminal domain E4185_09700 PF03888 MucB/RseB N-terminal domain E4185_09710 PF00009 Elongation factor Tu GTP binding domain E4185_09710 PF06421 GTP-binding protein LepA C-terminus E4185_09710 PF00679 Elongation factor G C-terminus E4185_09710 PF03144 Elongation factor Tu domain 2 E4185_09715 PF10502 Signal peptidase, peptidase S26 E4185_09720 PF00035 Double-stranded RNA binding motif E4185_09720 PF14622 Ribonuclease-III-like E4185_09725 PF01926 50S ribosome-binding GTPase E4185_09725 PF07650 KH domain E4185_09730 PF11967 Recombination protein O N terminal E4185_09730 PF02565 Recombination protein O C terminal E4185_09735 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E4185_09740 PF01510 N-acetylmuramoyl-L-alanine amidase E4185_09745 PF07308 Protein of unknown function (DUF1456) E4185_09750 PF00672 HAMP domain E4185_09750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_09750 PF00512 His Kinase A (phospho-acceptor) domain E4185_09750 PF01627 Hpt domain E4185_09750 PF00072 Response regulator receiver domain E4185_09750 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4185_09755 PF05958 tRNA (Uracil-5-)-methyltransferase E4185_09755 PF01938 TRAM domain E4185_09760 PF13291 ACT domain E4185_09760 PF04607 Region found in RelA / SpoT proteins E4185_09760 PF02824 TGS domain E4185_09765 PF03819 MazG nucleotide pyrophosphohydrolase domain E4185_09770 PF00117 Glutamine amidotransferase class-I E4185_09770 PF06418 CTP synthase N-terminus E4185_09775 PF00113 Enolase, C-terminal TIM barrel domain E4185_09775 PF03952 Enolase, N-terminal domain E4185_09780 PF04977 Septum formation initiator E4185_09785 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4185_09790 PF02542 YgbB family E4185_09795 PF01142 tRNA pseudouridine synthase D (TruD) E4185_09810 PF09335 SNARE associated Golgi protein E4185_09815 PF01476 LysM domain E4185_09815 PF01551 Peptidase family M23 E4185_09820 PF04545 Sigma-70, region 4 E4185_09820 PF00140 Sigma-70 factor, region 1.2 E4185_09820 PF04542 Sigma-70 region 2 E4185_09820 PF04539 Sigma-70 region 3 E4185_09825 PF00814 Glycoprotease family E4185_09830 PF01165 Ribosomal protein S21 E4185_09835 PF09424 Yqey-like protein E4185_09840 PF10410 DnaB-helicase binding domain of primase E4185_09840 PF08278 DNA primase DnaG DnaB-binding E4185_09840 PF01807 CHC2 zinc finger E4185_09840 PF08275 DNA primase catalytic core, N-terminal domain E4185_09845 PF04546 Sigma-70, non-essential region E4185_09845 PF03979 Sigma-70 factor, region 1.1 E4185_09845 PF04542 Sigma-70 region 2 E4185_09845 PF04539 Sigma-70 region 3 E4185_09845 PF04545 Sigma-70, region 4 E4185_09845 PF00140 Sigma-70 factor, region 1.2 E4185_09855 PF00128 Alpha amylase, catalytic domain E4185_09870 PF02843 Phosphoribosylglycinamide synthetase, C domain E4185_09870 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E4185_09870 PF02844 Phosphoribosylglycinamide synthetase, N domain E4185_09875 PF02142 MGS-like domain E4185_09875 PF01808 AICARFT/IMPCHase bienzyme E4185_09880 PF13411 MerR HTH family regulatory protein E4185_09890 PF03889 Alternative ribosome-rescue factor A E4185_09895 PF04055 Radical SAM superfamily E4185_09895 PF06969 HemN C-terminal domain E4185_09900 PF01725 Ham1 family E4185_09905 PF07690 Major Facilitator Superfamily E4185_09910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E4185_09910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4185_09920 PF01957 NfeD-like C-terminal, partner-binding E4185_09925 PF16200 C-terminal region of band_7 E4185_09925 PF01145 SPFH domain / Band 7 family E4185_09930 PF14824 Sirohaem biosynthesis protein central E4185_09930 PF10414 Sirohaem synthase dimerisation region E4185_09930 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4185_09935 PF01507 Phosphoadenosine phosphosulfate reductase family E4185_09940 PF00009 Elongation factor Tu GTP binding domain E4185_09945 PF03600 Citrate transporter E4185_09945 PF02080 TrkA-C domain E4185_09955 PF01609 Transposase DDE domain E4185_09955 PF05598 Transposase domain (DUF772) E4185_09990 PF00005 ABC transporter E4185_10005 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) E4185_10020 PF00719 Inorganic pyrophosphatase E4185_10025 PF01225 Mur ligase family, catalytic domain E4185_10025 PF02875 Mur ligase family, glutamate ligase domain E4185_10025 PF08245 Mur ligase middle domain E4185_10030 PF02441 Flavoprotein E4185_10035 PF00440 Bacterial regulatory proteins, tetR family E4185_10040 PF00156 Phosphoribosyl transferase domain E4185_10045 PF00005 ABC transporter E4185_10050 PF01061 ABC-2 type transporter E4185_10060 PF02569 Pantoate-beta-alanine ligase E4185_10065 PF02548 Ketopantoate hydroxymethyltransferase E4185_10070 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4185_10075 PF12626 Polymerase A arginine-rich C-terminus E4185_10075 PF12627 Probable RNA and SrmB- binding site of polymerase A E4185_10075 PF01743 Poly A polymerase head domain E4185_10080 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4185_10085 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4185_10090 PF03749 Sugar fermentation stimulation protein RE domain E4185_10090 PF17746 SfsA N-terminal OB domain E4185_10095 PF02834 LigT like Phosphoesterase E4185_10100 PF04408 Helicase associated domain (HA2) E4185_10100 PF00270 DEAD/DEAH box helicase E4185_10100 PF08482 ATP-dependent helicase C-terminal E4185_10100 PF00271 Helicase conserved C-terminal domain E4185_10105 PF14814 Bifunctional transglycosylase second domain E4185_10105 PF00905 Penicillin binding protein transpeptidase domain E4185_10105 PF00912 Transglycosylase E4185_10110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_10115 PF00893 Small Multidrug Resistance protein E4185_10120 PF00893 Small Multidrug Resistance protein E4185_10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_10125 PF03466 LysR substrate binding domain E4185_10150 PF00202 Aminotransferase class-III E4185_10155 PF00654 Voltage gated chloride channel E4185_10165 PF01521 Iron-sulphur cluster biosynthesis E4185_10190 PF01810 LysE type translocator E4185_10205 PF13006 Insertion element 4 transposase N-terminal E4185_10205 PF01609 Transposase DDE domain E4185_10215 PF00665 Integrase core domain E4185_10220 PF01695 IstB-like ATP binding protein E4185_10235 PF01609 Transposase DDE domain E4185_10245 PF13358 DDE superfamily endonuclease E4185_10245 PF13592 Winged helix-turn helix E4185_10265 PF13005 zinc-finger binding domain of transposase IS66 E4185_10265 PF13007 Transposase C of IS166 homeodomain E4185_10265 PF03050 Transposase IS66 family E4185_10265 PF13817 IS66 C-terminal element E4185_10300 PF04002 RadC-like JAB domain E4185_10345 PF02342 TerD domain E4185_10375 PF00005 ABC transporter E4185_10385 PF03781 Sulfatase-modifying factor enzyme 1 E4185_10395 PF05154 TM2 domain E4185_10400 PF02954 Bacterial regulatory protein, Fis family E4185_10405 PF01207 Dihydrouridine synthase (Dus) E4185_10415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_10445 PF00072 Response regulator receiver domain E4185_10450 PF00854 POT family E4185_10455 PF00483 Nucleotidyl transferase E4185_10465 PF00459 Inositol monophosphatase family E4185_10470 PF03795 YCII-related domain E4185_10475 PF04279 Intracellular septation protein A E4185_10480 PF00282 Pyridoxal-dependent decarboxylase conserved domain E4185_10485 PF03006 Haemolysin-III related E4185_10490 PF06826 Predicted Permease Membrane Region E4185_10490 PF02080 TrkA-C domain E4185_10500 PF07690 Major Facilitator Superfamily E4185_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_10505 PF03466 LysR substrate binding domain E4185_10510 PF07504 Fungalysin/Thermolysin Propeptide Motif E4185_10510 PF04151 Bacterial pre-peptidase C-terminal domain E4185_10510 PF02868 Thermolysin metallopeptidase, alpha-helical domain E4185_10510 PF03413 Peptidase propeptide and YPEB domain E4185_10510 PF01447 Thermolysin metallopeptidase, catalytic domain E4185_10515 PF13302 Acetyltransferase (GNAT) domain E4185_10520 PF13302 Acetyltransferase (GNAT) domain E4185_10535 PF00871 Acetokinase family E4185_10540 PF00924 Mechanosensitive ion channel E4185_10545 PF17969 L,D-transpeptidase C-terminal domain E4185_10545 PF03734 L,D-transpeptidase catalytic domain E4185_10550 PF00474 Sodium:solute symporter family E4185_10590 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E4185_10605 PF00571 CBS domain E4185_10610 PF00267 Gram-negative porin E4185_10615 PF00072 Response regulator receiver domain E4185_10615 PF01584 CheW-like domain E4185_10620 PF13472 GDSL-like Lipase/Acylhydrolase family E4185_10625 PF00005 ABC transporter E4185_10635 PF01370 NAD dependent epimerase/dehydratase family E4185_10635 PF08338 Domain of unknown function (DUF1731) E4185_10640 PF12792 CSS motif domain associated with EAL E4185_10640 PF00563 EAL domain E4185_10645 PF00155 Aminotransferase class I and II E4185_10650 PF01483 Proprotein convertase P-domain E4185_10650 PF04389 Peptidase family M28 E4185_10655 PF02390 Putative methyltransferase E4185_10660 PF04320 Protein with unknown function (DUF469) E4185_10665 PF04960 Glutaminase E4185_10670 PF00581 Rhodanese-like domain E4185_10675 PF06004 Bacterial protein of unknown function (DUF903) E4185_10680 PF00005 ABC transporter E4185_10680 PF00664 ABC transporter transmembrane region E4185_10685 PF00561 alpha/beta hydrolase fold E4185_10710 PF00589 Phage integrase family E4185_10730 PF00563 EAL domain E4185_10730 PF00990 Diguanylate cyclase, GGDEF domain E4185_10730 PF05231 MASE1 E4185_10730 PF08447 PAS fold E4185_10730 PF13426 PAS domain E4185_10730 PF08448 PAS fold E4185_10735 PF00589 Phage integrase family E4185_10735 PF02899 Phage integrase, N-terminal SAM-like domain E4185_10770 PF05598 Transposase domain (DUF772) E4185_10770 PF01609 Transposase DDE domain E4185_10795 PF01609 Transposase DDE domain E4185_10795 PF05598 Transposase domain (DUF772) E4185_10810 PF00356 Bacterial regulatory proteins, lacI family E4185_10815 PF04193 PQ loop repeat E4185_10820 PF01263 Aldose 1-epimerase E4185_10825 PF00288 GHMP kinases N terminal domain E4185_10825 PF08544 GHMP kinases C terminal E4185_10825 PF10509 Galactokinase galactose-binding signature E4185_10830 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E4185_10830 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E4185_10835 PF16363 GDP-mannose 4,6 dehydratase E4185_10850 PF06877 Regulator of ribonuclease activity B E4185_10855 PF00563 EAL domain E4185_10855 PF03707 Bacterial signalling protein N terminal repeat E4185_10855 PF00990 Diguanylate cyclase, GGDEF domain E4185_10865 PF12833 Helix-turn-helix domain E4185_10865 PF12852 Cupin E4185_10870 PF02627 Carboxymuconolactone decarboxylase family E4185_10885 PF09905 DNA-binding protein VF530 E4185_10890 PF02666 Phosphatidylserine decarboxylase E4185_10895 PF03193 RsgA GTPase E4185_10900 PF00929 Exonuclease E4185_10935 PF00313 'Cold-shock' DNA-binding domain E4185_10945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_10945 PF00672 HAMP domain E4185_10950 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4185_10955 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4185_10985 PF01609 Transposase DDE domain E4185_10985 PF13006 Insertion element 4 transposase N-terminal E4185_10990 PF06483 Chitinase C E4185_10990 PF00704 Glycosyl hydrolases family 18 E4185_11005 PF02472 Biopolymer transport protein ExbD/TolR E4185_11010 PF01618 MotA/TolQ/ExbB proton channel family E4185_11015 PF01618 MotA/TolQ/ExbB proton channel family E4185_11025 PF00593 TonB dependent receptor E4185_11025 PF07715 TonB-dependent Receptor Plug Domain E4185_11030 PF00528 Binding-protein-dependent transport system inner membrane component E4185_11035 PF00528 Binding-protein-dependent transport system inner membrane component E4185_11035 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_11040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_11045 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_11045 PF00005 ABC transporter E4185_11050 PF00005 ABC transporter E4185_11050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_11060 PF07687 Peptidase dimerisation domain E4185_11060 PF01546 Peptidase family M20/M25/M40 E4185_11075 PF00156 Phosphoribosyl transferase domain E4185_11085 PF07417 Sigma factor-binding transcriptional regulator Crl E4185_11090 PF01472 PUA domain E4185_11090 PF00696 Amino acid kinase family E4185_11095 PF00171 Aldehyde dehydrogenase family E4185_11105 PF00582 Universal stress protein family E4185_11120 PF04324 BFD-like [2Fe-2S] binding domain E4185_11120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4185_11120 PF01568 Molydopterin dinucleotide binding domain E4185_11120 PF00384 Molybdopterin oxidoreductase E4185_11125 PF14824 Sirohaem biosynthesis protein central E4185_11125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4185_11125 PF10414 Sirohaem synthase dimerisation region E4185_11135 PF00005 ABC transporter E4185_11140 PF00528 Binding-protein-dependent transport system inner membrane component E4185_11145 PF00005 ABC transporter E4185_11150 PF04324 BFD-like [2Fe-2S] binding domain E4185_11150 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_11150 PF13806 Rieske-like [2Fe-2S] domain E4185_11150 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4185_11150 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4185_11150 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4185_11155 PF13806 Rieske-like [2Fe-2S] domain E4185_11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_11155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4185_11155 PF04324 BFD-like [2Fe-2S] binding domain E4185_11155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4185_11155 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4185_11160 PF00294 pfkB family carbohydrate kinase E4185_11165 PF04227 Indigoidine synthase A like protein E4185_11175 PF00194 Eukaryotic-type carbonic anhydrase E4185_11210 PF00550 Phosphopantetheine attachment site E4185_11215 PF00550 Phosphopantetheine attachment site E4185_11225 PF13193 AMP-binding enzyme C-terminal domain E4185_11225 PF00501 AMP-binding enzyme E4185_11230 PF07977 FabA-like domain E4185_11240 PF00221 Aromatic amino acid lyase E4185_11265 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_11265 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_11280 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_11280 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_11290 PF00994 Probable molybdopterin binding domain E4185_11295 PF01609 Transposase DDE domain E4185_11305 PF06738 Putative threonine/serine exporter E4185_11310 PF12821 Threonine/Serine exporter, ThrE E4185_11315 PF00186 Dihydrofolate reductase E4185_11320 PF00571 CBS domain E4185_11320 PF00005 ABC transporter E4185_11325 PF00528 Binding-protein-dependent transport system inner membrane component E4185_11330 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E4185_11335 PF01507 Phosphoadenosine phosphosulfate reductase family E4185_11340 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4185_11340 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4185_11345 PF00175 Oxidoreductase NAD-binding domain E4185_11345 PF00667 FAD binding domain E4185_11345 PF00258 Flavodoxin E4185_11350 PF02567 Phenazine biosynthesis-like protein E4185_11355 PF01336 OB-fold nucleic acid binding domain E4185_11355 PF00152 tRNA synthetases class II (D, K and N) E4185_11365 PF00672 HAMP domain E4185_11365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_11365 PF02743 Cache domain E4185_11370 PF13426 PAS domain E4185_11370 PF00990 Diguanylate cyclase, GGDEF domain E4185_11370 PF00563 EAL domain E4185_11380 PF03707 Bacterial signalling protein N terminal repeat E4185_11380 PF00563 EAL domain E4185_11380 PF00990 Diguanylate cyclase, GGDEF domain E4185_11385 PF03616 Sodium/glutamate symporter E4185_11390 PF17763 Glutaminase/Asparaginase C-terminal domain E4185_11390 PF00710 Asparaginase, N-terminal E4185_11395 PF07023 Protein of unknown function (DUF1315) E4185_11400 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4185_11400 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4185_11415 PF01343 Peptidase family S49 E4185_11420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4185_11420 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_11425 PF00881 Nitroreductase family E4185_11430 PF12464 Maltose acetyltransferase E4185_11430 PF14602 Hexapeptide repeat of succinyl-transferase E4185_11440 PF08240 Alcohol dehydrogenase GroES-like domain E4185_11440 PF00107 Zinc-binding dehydrogenase E4185_11445 PF03466 LysR substrate binding domain E4185_11445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_11450 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4185_11450 PF00367 phosphotransferase system, EIIB E4185_11450 PF02378 Phosphotransferase system, EIIC E4185_11455 PF00474 Sodium:solute symporter family E4185_11460 PF06196 Protein of unknown function (DUF997) E4185_11465 PF02785 Biotin carboxylase C-terminal domain E4185_11465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4185_11465 PF00289 Biotin carboxylase, N-terminal domain E4185_11470 PF00364 Biotin-requiring enzyme E4185_11475 PF01220 Dehydroquinase class II E4185_11480 PF13193 AMP-binding enzyme C-terminal domain E4185_11480 PF16177 Acetyl-coenzyme A synthetase N-terminus E4185_11480 PF00501 AMP-binding enzyme E4185_11485 PF00563 EAL domain E4185_11485 PF00990 Diguanylate cyclase, GGDEF domain E4185_11485 PF03707 Bacterial signalling protein N terminal repeat E4185_11495 PF02613 Nitrate reductase delta subunit E4185_11500 PF01568 Molydopterin dinucleotide binding domain E4185_11500 PF18364 Molybdopterin oxidoreductase N-terminal domain E4185_11500 PF00384 Molybdopterin oxidoreductase E4185_11505 PF03264 NapC/NirT cytochrome c family, N-terminal region E4185_11510 PF00072 Response regulator receiver domain E4185_11510 PF00486 Transcriptional regulatory protein, C terminal E4185_11520 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4185_11525 PF01627 Hpt domain E4185_11525 PF00512 His Kinase A (phospho-acceptor) domain E4185_11525 PF00072 Response regulator receiver domain E4185_11525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_11525 PF00672 HAMP domain E4185_11535 PF00464 Serine hydroxymethyltransferase E4185_11550 PF03477 ATP cone domain E4185_11560 PF00677 Lumazine binding domain E4185_11565 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4185_11565 PF00925 GTP cyclohydrolase II E4185_11570 PF00885 6,7-dimethyl-8-ribityllumazine synthase E4185_11575 PF01029 NusB family E4185_11580 PF00586 AIR synthase related protein, N-terminal domain E4185_11580 PF02769 AIR synthase related protein, C-terminal domain E4185_11585 PF04608 Phosphatidylglycerophosphatase A E4185_11590 PF00005 ABC transporter E4185_11590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_11595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_11605 PF00528 Binding-protein-dependent transport system inner membrane component E4185_11605 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_11610 PF02780 Transketolase, C-terminal domain E4185_11610 PF02779 Transketolase, pyrimidine binding domain E4185_11610 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4185_11615 PF00348 Polyprenyl synthetase E4185_11620 PF02609 Exonuclease VII small subunit E4185_11625 PF01618 MotA/TolQ/ExbB proton channel family E4185_11630 PF00691 OmpA family E4185_11630 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4185_11635 PF01272 Transcription elongation factor, GreA/GreB, C-term E4185_11635 PF03449 Transcription elongation factor, N-terminal E4185_11645 PF01985 CRS1 / YhbY (CRM) domain E4185_11650 PF01728 FtsJ-like methyltransferase E4185_11655 PF01434 Peptidase family M41 E4185_11655 PF17862 AAA+ lid domain E4185_11655 PF00004 ATPase family associated with various cellular activities (AAA) E4185_11655 PF06480 FtsH Extracellular E4185_11660 PF00809 Pterin binding enzyme E4185_11665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4185_11665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4185_11665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4185_11665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4185_11670 PF00121 Triosephosphate isomerase E4185_11675 PF03840 Preprotein translocase SecG subunit E4185_11690 PF02576 RimP N-terminal domain E4185_11690 PF17384 RimP C-terminal SH3 domain E4185_11695 PF13184 NusA-like KH domain E4185_11695 PF00575 S1 RNA binding domain E4185_11695 PF08529 NusA N-terminal domain E4185_11700 PF00009 Elongation factor Tu GTP binding domain E4185_11700 PF11987 Translation-initiation factor 2 E4185_11700 PF08364 Bacterial translation initiation factor IF-2 associated region E4185_11700 PF04760 Translation initiation factor IF-2, N-terminal region E4185_11705 PF02033 Ribosome-binding factor A E4185_11710 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4185_11710 PF16198 tRNA pseudouridylate synthase B C-terminal domain E4185_11710 PF09157 Pseudouridine synthase II TruB, C-terminal E4185_11715 PF00312 Ribosomal protein S15 E4185_11720 PF00575 S1 RNA binding domain E4185_11720 PF03725 3' exoribonuclease family, domain 2 E4185_11720 PF00013 KH domain E4185_11720 PF01138 3' exoribonuclease family, domain 1 E4185_11720 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E4185_11725 PF07690 Major Facilitator Superfamily E4185_11730 PF02635 DsrE/DsrF-like family E4185_11735 PF06476 Protein of unknown function (DUF1090) E4185_11740 PF12838 4Fe-4S dicluster domain E4185_11750 PF17969 L,D-transpeptidase C-terminal domain E4185_11750 PF03734 L,D-transpeptidase catalytic domain E4185_11760 PF01523 Putative modulator of DNA gyrase E4185_11765 PF01523 Putative modulator of DNA gyrase E4185_11775 PF00258 Flavodoxin E4185_11790 PF01741 Large-conductance mechanosensitive channel, MscL E4185_11800 PF02954 Bacterial regulatory protein, Fis family E4185_11800 PF00072 Response regulator receiver domain E4185_11800 PF00158 Sigma-54 interaction domain E4185_11805 PF17768 RecJ OB domain E4185_11805 PF02272 DHHA1 domain E4185_11805 PF01368 DHH family E4185_11815 PF02508 Rnf-Nqr subunit, membrane protein E4185_11825 PF04055 Radical SAM superfamily E4185_11825 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E4185_11835 PF03099 Biotin/lipoate A/B protein ligase family E4185_11840 PF04359 Protein of unknown function (DUF493) E4185_11845 PF07943 Penicillin-binding protein 5, C-terminal domain E4185_11845 PF00768 D-alanyl-D-alanine carboxypeptidase E4185_11850 PF03330 Lytic transglycolase E4185_11850 PF05036 Sporulation related domain E4185_11855 PF13406 Transglycosylase SLT domain E4185_11860 PF01098 Cell cycle protein E4185_11865 PF00905 Penicillin binding protein transpeptidase domain E4185_11865 PF03717 Penicillin-binding Protein dimerisation domain E4185_11870 PF02590 Predicted SPOUT methyltransferase E4185_11880 PF01467 Cytidylyltransferase-like E4185_11895 PF00133 tRNA synthetases class I (I, L, M and V) E4185_11895 PF08264 Anticodon-binding domain of tRNA E4185_11895 PF13603 Leucyl-tRNA synthetase, Domain 2 E4185_11900 PF07295 Zinc-ribbon containing domain E4185_11905 PF00795 Carbon-nitrogen hydrolase E4185_11910 PF00571 CBS domain E4185_11910 PF03471 Transporter associated domain E4185_11915 PF02130 Uncharacterized protein family UPF0054 E4185_11920 PF02562 PhoH-like protein E4185_11925 PF00919 Uncharacterized protein family UPF0004 E4185_11925 PF01938 TRAM domain E4185_11925 PF04055 Radical SAM superfamily E4185_11930 PF01494 FAD binding domain E4185_11935 PF00313 'Cold-shock' DNA-binding domain E4185_11940 PF03466 LysR substrate binding domain E4185_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_11950 PF13419 Haloacid dehalogenase-like hydrolase E4185_11955 PF17151 Periplasmic sensor domain E4185_11955 PF00990 Diguanylate cyclase, GGDEF domain E4185_11980 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4185_11980 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4185_11995 PF01132 Elongation factor P (EF-P) OB domain E4185_11995 PF09285 Elongation factor P, C-terminal E4185_11995 PF08207 Elongation factor P (EF-P) KOW-like domain E4185_12005 PF00478 IMP dehydrogenase / GMP reductase domain E4185_12015 PF08521 Two-component sensor kinase N-terminal E4185_12015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_12015 PF00512 His Kinase A (phospho-acceptor) domain E4185_12020 PF00072 Response regulator receiver domain E4185_12020 PF00486 Transcriptional regulatory protein, C terminal E4185_12030 PF00106 short chain dehydrogenase E4185_12040 PF00501 AMP-binding enzyme E4185_12050 PF13649 Methyltransferase domain E4185_12055 PF06224 Winged helix DNA-binding domain E4185_12060 PF02313 Fumarate reductase subunit D E4185_12065 PF02300 Fumarate reductase subunit C E4185_12070 PF13183 4Fe-4S dicluster domain E4185_12070 PF13085 2Fe-2S iron-sulfur cluster binding domain E4185_12075 PF02910 Fumarate reductase flavoprotein C-term E4185_12075 PF00890 FAD binding domain E4185_12080 PF00672 HAMP domain E4185_12080 PF02743 Cache domain E4185_12080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_12085 PF03009 Glycerophosphoryl diester phosphodiesterase family E4185_12090 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4185_12090 PF00924 Mechanosensitive ion channel E4185_12090 PF12795 Mechanosensitive ion channel porin domain E4185_12100 PF01551 Peptidase family M23 E4185_12100 PF01476 LysM domain E4185_12100 PF08525 Opacity-associated protein A N-terminal motif E4185_12105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4185_12105 PF02753 Pili assembly chaperone PapD, C-terminal domain E4185_12115 PF02753 Pili assembly chaperone PapD, C-terminal domain E4185_12115 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4185_12130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12130 PF03466 LysR substrate binding domain E4185_12145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12145 PF03466 LysR substrate binding domain E4185_12150 PF17092 Penicillin-binding protein OB-like domain E4185_12150 PF00905 Penicillin binding protein transpeptidase domain E4185_12150 PF00912 Transglycosylase E4185_12180 PF07660 Secretin and TonB N terminus short domain E4185_12180 PF03958 Bacterial type II/III secretion system short domain E4185_12180 PF11741 AMIN domain E4185_12180 PF00263 Bacterial type II and III secretion system protein E4185_12185 PF01202 Shikimate kinase E4185_12190 PF01761 3-dehydroquinate synthase E4185_12200 PF02086 D12 class N6 adenine-specific DNA methyltransferase E4185_12205 PF00834 Ribulose-phosphate 3 epimerase family E4185_12210 PF13419 Haloacid dehalogenase-like hydrolase E4185_12215 PF00579 tRNA synthetases class I (W and Y) E4185_12230 PF00202 Aminotransferase class-III E4185_12235 PF04958 Arginine N-succinyltransferase beta subunit E4185_12240 PF00171 Aldehyde dehydrogenase family E4185_12250 PF13419 Haloacid dehalogenase-like hydrolase E4185_12255 PF07690 Major Facilitator Superfamily E4185_12265 PF07859 alpha/beta hydrolase fold E4185_12275 PF03600 Citrate transporter E4185_12275 PF02080 TrkA-C domain E4185_12320 PF01926 50S ribosome-binding GTPase E4185_12320 PF06071 Protein of unknown function (DUF933) E4185_12325 PF01195 Peptidyl-tRNA hydrolase E4185_12330 PF02872 5'-nucleotidase, C-terminal domain E4185_12330 PF00149 Calcineurin-like phosphoesterase E4185_12335 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4185_12335 PF14572 Phosphoribosyl synthetase-associated domain E4185_12345 PF00288 GHMP kinases N terminal domain E4185_12345 PF08544 GHMP kinases C terminal E4185_12350 PF03550 Outer membrane lipoprotein LolB E4185_12355 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E4185_12355 PF01488 Shikimate / quinate 5-dehydrogenase E4185_12355 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E4185_12360 PF00472 RF-1 domain E4185_12360 PF03462 PCRF domain E4185_12365 PF17827 PrmC N-terminal domain E4185_12365 PF13847 Methyltransferase domain E4185_12375 PF13369 Transglutaminase-like superfamily E4185_12380 PF00793 DAHP synthetase I family E4185_12385 PF00375 Sodium:dicarboxylate symporter family E4185_12390 PF01228 Glycine radical E4185_12395 PF03167 Uracil DNA glycosylase superfamily E4185_12410 PF00923 Transaldolase/Fructose-6-phosphate aldolase E4185_12415 PF01235 Sodium:alanine symporter family E4185_12420 PF00144 Beta-lactamase E4185_12440 PF03466 LysR substrate binding domain E4185_12440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12445 PF03652 Holliday junction resolvase E4185_12460 PF02622 Uncharacterized ACR, COG1678 E4185_12465 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E4185_12465 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E4185_12470 PF04452 RNA methyltransferase E4185_12475 PF04231 Endonuclease I E4185_12480 PF10263 SprT-like family E4185_12485 PF02772 S-adenosylmethionine synthetase, central domain E4185_12485 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4185_12485 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4185_12490 PF02779 Transketolase, pyrimidine binding domain E4185_12490 PF00456 Transketolase, thiamine diphosphate binding domain E4185_12490 PF02780 Transketolase, C-terminal domain E4185_12510 PF03702 Anhydro-N-acetylmuramic acid kinase E4185_12515 PF01551 Peptidase family M23 E4185_12515 PF01476 LysM domain E4185_12515 PF08525 Opacity-associated protein A N-terminal motif E4185_12520 PF00579 tRNA synthetases class I (W and Y) E4185_12525 PF01204 Trehalase E4185_12535 PF01161 Phosphatidylethanolamine-binding protein E4185_12545 PF03466 LysR substrate binding domain E4185_12545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12555 PF00155 Aminotransferase class I and II E4185_12560 PF07690 Major Facilitator Superfamily E4185_12565 PF03466 LysR substrate binding domain E4185_12565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12570 PF00106 short chain dehydrogenase E4185_12575 PF08496 Peptidase family S49 N-terminal E4185_12575 PF01343 Peptidase family S49 E4185_12580 PF04996 Succinylarginine dihydrolase E4185_12585 PF01131 DNA topoisomerase E4185_12585 PF08272 Topoisomerase I zinc-ribbon-like E4185_12585 PF01396 Topoisomerase DNA binding C4 zinc finger E4185_12585 PF01751 Toprim domain E4185_12595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_12595 PF08447 PAS fold E4185_12605 PF01869 BadF/BadG/BcrA/BcrD ATPase family E4185_12615 PF00005 ABC transporter E4185_12615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_12620 PF00005 ABC transporter E4185_12620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_12625 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_12625 PF00528 Binding-protein-dependent transport system inner membrane component E4185_12630 PF00528 Binding-protein-dependent transport system inner membrane component E4185_12635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_12640 PF00919 Uncharacterized protein family UPF0004 E4185_12640 PF18693 TRAM domain E4185_12640 PF04055 Radical SAM superfamily E4185_12650 PF02049 Flagellar hook-basal body complex protein FliE E4185_12655 PF08345 Flagellar M-ring protein C-terminal E4185_12655 PF01514 Secretory protein of YscJ/FliF family E4185_12660 PF14841 FliG middle domain E4185_12660 PF01706 FliG C-terminal domain E4185_12660 PF14842 FliG N-terminal domain E4185_12670 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4185_12670 PF18269 T3SS EscN ATPase C-terminal domain E4185_12690 PF02154 Flagellar motor switch protein FliM E4185_12690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4185_12695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4185_12700 PF04347 Flagellar biosynthesis protein, FliO E4185_12705 PF00813 FliP family E4185_12710 PF01313 Bacterial export proteins, family 3 E4185_12715 PF01311 Bacterial export proteins, family 1 E4185_12720 PF01312 FlhB HrpN YscU SpaS Family E4185_12725 PF00771 FHIPEP family E4185_12730 PF00448 SRP54-type protein, GTPase domain E4185_12735 PF10609 NUBPL iron-transfer P-loop NTPase E4185_12740 PF04542 Sigma-70 region 2 E4185_12740 PF04545 Sigma-70, region 4 E4185_12740 PF04539 Sigma-70 region 3 E4185_12745 PF00072 Response regulator receiver domain E4185_12750 PF04344 Chemotaxis phosphatase, CheZ E4185_12755 PF00072 Response regulator receiver domain E4185_12755 PF01627 Hpt domain E4185_12755 PF02895 Signal transducing histidine kinase, homodimeric domain E4185_12755 PF01584 CheW-like domain E4185_12755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_12760 PF01339 CheB methylesterase E4185_12760 PF00072 Response regulator receiver domain E4185_12765 PF01618 MotA/TolQ/ExbB proton channel family E4185_12770 PF00691 OmpA family E4185_12770 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4185_12775 PF13614 AAA domain E4185_12785 PF01584 CheW-like domain E4185_12795 PF00005 ABC transporter E4185_12805 PF01578 Cytochrome C assembly protein E4185_12810 PF04995 Heme exporter protein D (CcmD) E4185_12815 PF03100 CcmE E4185_12820 PF01578 Cytochrome C assembly protein E4185_12820 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E4185_12825 PF08534 Redoxin E4185_12830 PF03918 Cytochrome C biogenesis protein E4185_12840 PF04333 MlaA lipoprotein E4185_12845 PF13006 Insertion element 4 transposase N-terminal E4185_12845 PF01609 Transposase DDE domain E4185_12850 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4185_12850 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4185_12855 PF00462 Glutaredoxin E4185_12860 PF01189 16S rRNA methyltransferase RsmB/F E4185_12860 PF01029 NusB family E4185_12875 PF01243 Pyridoxamine 5'-phosphate oxidase E4185_12875 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E4185_12880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_12880 PF03466 LysR substrate binding domain E4185_12885 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) E4185_12890 PF00588 SpoU rRNA Methylase family E4185_12905 PF08544 GHMP kinases C terminal E4185_12905 PF00288 GHMP kinases N terminal domain E4185_12910 PF00291 Pyridoxal-phosphate dependent enzyme E4185_12910 PF14821 Threonine synthase N terminus E4185_12915 PF13474 SnoaL-like domain E4185_12935 PF13808 DDE_Tnp_1-associated E4185_12935 PF01609 Transposase DDE domain E4185_12965 PF01797 Transposase IS200 like E4185_12980 PF05114 Protein of unknown function (DUF692) E4185_13000 PF13426 PAS domain E4185_13000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_13000 PF08447 PAS fold E4185_13015 PF03205 Molybdopterin guanine dinucleotide synthesis protein B E4185_13020 PF12804 MobA-like NTP transferase domain E4185_13025 PF03949 Malic enzyme, NAD binding domain E4185_13025 PF00390 Malic enzyme, N-terminal domain E4185_13030 PF00860 Permease family E4185_13045 PF10282 Lactonase, 7-bladed beta-propeller E4185_13050 PF01810 LysE type translocator E4185_13055 PF12795 Mechanosensitive ion channel porin domain E4185_13055 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4185_13055 PF00924 Mechanosensitive ion channel E4185_13060 PF02887 Pyruvate kinase, alpha/beta domain E4185_13060 PF00224 Pyruvate kinase, barrel domain E4185_13065 PF08007 Cupin superfamily protein E4185_13070 PF08328 Adenylosuccinate lyase C-terminal E4185_13070 PF00206 Lyase E4185_13075 PF04356 Protein of unknown function (DUF489) E4185_13085 PF00293 NUDIX domain E4185_13090 PF00849 RNA pseudouridylate synthase E4185_13100 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_13105 PF07690 Major Facilitator Superfamily E4185_13110 PF02378 Phosphotransferase system, EIIC E4185_13110 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4185_13110 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_13140 PF11999 Protein of unknown function (DUF3494) E4185_13140 PF02368 Bacterial Ig-like domain (group 2) E4185_13160 PF01238 Phosphomannose isomerase type I E4185_13165 PF12833 Helix-turn-helix domain E4185_13170 PF00180 Isocitrate/isopropylmalate dehydrogenase E4185_13180 PF00291 Pyridoxal-phosphate dependent enzyme E4185_13185 PF02447 GntP family permease E4185_13190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_13190 PF03466 LysR substrate binding domain E4185_13195 PF00816 H-NS histone family E4185_13200 PF00793 DAHP synthetase I family E4185_13210 PF02321 Outer membrane efflux protein E4185_13215 PF02687 FtsX-like permease family E4185_13215 PF12704 MacB-like periplasmic core domain E4185_13215 PF00005 ABC transporter E4185_13220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_13230 PF02833 DHHA2 domain E4185_13230 PF01368 DHH family E4185_13235 PF02463 RecF/RecN/SMC N terminal domain E4185_13240 PF17158 Membrane-associated sensor, integral membrane domain E4185_13240 PF00990 Diguanylate cyclase, GGDEF domain E4185_13245 PF01513 ATP-NAD kinase E4185_13250 PF01025 GrpE E4185_13255 PF00012 Hsp70 protein E4185_13260 PF00684 DnaJ central domain E4185_13260 PF00226 DnaJ domain E4185_13260 PF01556 DnaJ C terminal domain E4185_13265 PF02264 LamB porin E4185_13265 PF11471 Maltoporin periplasmic N-terminal extension E4185_13280 PF08244 Glycosyl hydrolases family 32 C terminal E4185_13280 PF00251 Glycosyl hydrolases family 32 N-terminal domain E4185_13285 PF00356 Bacterial regulatory proteins, lacI family E4185_13285 PF13407 Periplasmic binding protein domain E4185_13290 PF02308 MgtC family E4185_13310 PF04143 Sulphur transport E4185_13325 PF00873 AcrB/AcrD/AcrF family E4185_13330 PF00529 HlyD membrane-fusion protein of T1SS E4185_13330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_13335 PF02687 FtsX-like permease family E4185_13335 PF12704 MacB-like periplasmic core domain E4185_13335 PF00005 ABC transporter E4185_13340 PF02687 FtsX-like permease family E4185_13340 PF00005 ABC transporter E4185_13340 PF12704 MacB-like periplasmic core domain E4185_13345 PF12704 MacB-like periplasmic core domain E4185_13345 PF00005 ABC transporter E4185_13345 PF02687 FtsX-like permease family E4185_13350 PF00563 EAL domain E4185_13350 PF03707 Bacterial signalling protein N terminal repeat E4185_13350 PF00990 Diguanylate cyclase, GGDEF domain E4185_13355 PF10437 Bacterial lipoate protein ligase C-terminus E4185_13355 PF03099 Biotin/lipoate A/B protein ligase family E4185_13360 PF01609 Transposase DDE domain E4185_13360 PF13808 DDE_Tnp_1-associated E4185_13370 PF12323 Helix-turn-helix domain E4185_13385 PF00873 AcrB/AcrD/AcrF family E4185_13390 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_13390 PF00529 HlyD membrane-fusion protein of T1SS E4185_13400 PF03372 Endonuclease/Exonuclease/phosphatase family E4185_13415 PF00011 Hsp20/alpha crystallin family E4185_13420 PF02424 ApbE family E4185_13425 PF00127 Copper binding proteins, plastocyanin/azurin family E4185_13455 PF02627 Carboxymuconolactone decarboxylase family E4185_13460 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4185_13460 PF06481 COX Aromatic Rich Motif E4185_13465 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4185_13470 PF00510 Cytochrome c oxidase subunit III E4185_13475 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E4185_13505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_13505 PF03466 LysR substrate binding domain E4185_13525 PF13657 HipA N-terminal domain E4185_13525 PF07804 HipA-like C-terminal domain E4185_13530 PF01381 Helix-turn-helix E4185_13545 PF01609 Transposase DDE domain E4185_13545 PF05598 Transposase domain (DUF772) E4185_13555 PF00291 Pyridoxal-phosphate dependent enzyme E4185_13560 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4185_13560 PF00218 Indole-3-glycerol phosphate synthase E4185_13570 PF00117 Glutamine amidotransferase class-I E4185_13570 PF02885 Glycosyl transferase family, helical bundle domain E4185_13570 PF00591 Glycosyl transferase family, a/b domain E4185_13575 PF04715 Anthranilate synthase component I, N terminal region E4185_13575 PF00425 chorismate binding enzyme E4185_13585 PF02811 PHP domain E4185_13590 PF01300 Telomere recombination E4185_13595 PF02616 Segregation and condensation protein ScpA E4185_13600 PF04079 Segregation and condensation complex subunit ScpB E4185_13605 PF00849 RNA pseudouridylate synthase E4185_13605 PF01479 S4 domain E4185_13630 PF00440 Bacterial regulatory proteins, tetR family E4185_13630 PF08361 MAATS-type transcriptional repressor, C-terminal region E4185_13635 PF00529 HlyD membrane-fusion protein of T1SS E4185_13635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_13640 PF00873 AcrB/AcrD/AcrF family E4185_13645 PF02321 Outer membrane efflux protein E4185_13660 PF00440 Bacterial regulatory proteins, tetR family E4185_13665 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4185_13665 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4185_13665 PF02770 Acyl-CoA dehydrogenase, middle domain E4185_13665 PF09317 Domain of unknown function (DUF1974) E4185_13670 PF00873 AcrB/AcrD/AcrF family E4185_13680 PF02887 Pyruvate kinase, alpha/beta domain E4185_13680 PF00224 Pyruvate kinase, barrel domain E4185_13685 PF01380 SIS domain E4185_13685 PF01418 Helix-turn-helix domain, rpiR family E4185_13690 PF02685 Glucokinase E4185_13695 PF08918 PhoQ Sensor E4185_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_13700 PF00486 Transcriptional regulatory protein, C terminal E4185_13700 PF00072 Response regulator receiver domain E4185_13705 PF16363 GDP-mannose 4,6 dehydratase E4185_13710 PF00483 Nucleotidyl transferase E4185_13715 PF05523 WxcM-like, C-terminal E4185_13720 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_13725 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4185_13735 PF00535 Glycosyl transferase family 2 E4185_13740 PF00535 Glycosyl transferase family 2 E4185_13745 PF00534 Glycosyl transferases group 1 E4185_13745 PF13439 Glycosyltransferase Family 4 E4185_13755 PF13439 Glycosyltransferase Family 4 E4185_13755 PF00534 Glycosyl transferases group 1 E4185_13765 PF02397 Bacterial sugar transferase E4185_13770 PF04321 RmlD substrate binding domain E4185_13775 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E4185_13780 PF02706 Chain length determinant protein E4185_13795 PF04337 Protein of unknown function, DUF480 E4185_13800 PF04434 SWIM zinc finger E4185_13800 PF00176 SNF2 family N-terminal domain E4185_13800 PF00271 Helicase conserved C-terminal domain E4185_13805 PF05472 DNA replication terminus site-binding protein (Ter protein) E4185_13815 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E4185_13820 PF00676 Dehydrogenase E1 component E4185_13825 PF02780 Transketolase, C-terminal domain E4185_13825 PF02779 Transketolase, pyrimidine binding domain E4185_13830 PF02817 e3 binding domain E4185_13830 PF00364 Biotin-requiring enzyme E4185_13830 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4185_13835 PF00313 'Cold-shock' DNA-binding domain E4185_13860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_13865 PF00892 EamA-like transporter family E4185_13875 PF01966 HD domain E4185_13875 PF11871 Domain of unknown function (DUF3391) E4185_13880 PF00849 RNA pseudouridylate synthase E4185_13880 PF01479 S4 domain E4185_13890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_13895 PF12850 Calcineurin-like phosphoesterase superfamily domain E4185_13910 PF13144 Chaperone for flagella basal body P-ring formation E4185_13915 PF00072 Response regulator receiver domain E4185_13915 PF01584 CheW-like domain E4185_13920 PF03705 CheR methyltransferase, all-alpha domain E4185_13920 PF01739 CheR methyltransferase, SAM binding domain E4185_13925 PF00460 Flagella basal body rod protein E4185_13930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4185_13930 PF00460 Flagella basal body rod protein E4185_13940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4185_13940 PF07559 Flagellar basal body protein FlaE E4185_13940 PF00460 Flagella basal body rod protein E4185_13945 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4185_13945 PF00460 Flagella basal body rod protein E4185_13950 PF00460 Flagella basal body rod protein E4185_13950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4185_13955 PF02107 Flagellar L-ring protein E4185_13960 PF02119 Flagellar P-ring protein E4185_13980 PF00571 CBS domain E4185_13980 PF01769 Divalent cation transporter E4185_13980 PF03448 MgtE intracellular N domain E4185_13985 PF02541 Ppx/GppA phosphatase family E4185_13990 PF13089 Polyphosphate kinase N-terminal domain E4185_13990 PF17941 Polyphosphate kinase C-terminal domain 1 E4185_13990 PF13090 Polyphosphate kinase C-terminal domain 2 E4185_13990 PF02503 Polyphosphate kinase middle domain E4185_13995 PF01842 ACT domain E4185_14010 PF00989 PAS fold E4185_14010 PF00512 His Kinase A (phospho-acceptor) domain E4185_14010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_14015 PF02954 Bacterial regulatory protein, Fis family E4185_14015 PF00072 Response regulator receiver domain E4185_14015 PF00158 Sigma-54 interaction domain E4185_14025 PF00551 Formyl transferase E4185_14030 PF02769 AIR synthase related protein, C-terminal domain E4185_14030 PF00586 AIR synthase related protein, N-terminal domain E4185_14045 PF00308 Bacterial dnaA protein E4185_14050 PF00463 Isocitrate lyase family E4185_14055 PF01274 Malate synthase E4185_14070 PF14437 MafB19-like deaminase E4185_14075 PF00528 Binding-protein-dependent transport system inner membrane component E4185_14080 PF00528 Binding-protein-dependent transport system inner membrane component E4185_14090 PF01895 PhoU domain E4185_14095 PF00571 CBS domain E4185_14095 PF03471 Transporter associated domain E4185_14095 PF01595 Cyclin M transmembrane N-terminal domain E4185_14105 PF02310 B12 binding domain E4185_14105 PF00809 Pterin binding enzyme E4185_14105 PF02574 Homocysteine S-methyltransferase E4185_14105 PF02965 Vitamin B12 dependent methionine synthase, activation domain E4185_14105 PF02607 B12 binding domain E4185_14110 PF13520 Amino acid permease E4185_14115 PF04116 Fatty acid hydroxylase superfamily E4185_14125 PF00005 ABC transporter E4185_14135 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_14140 PF00990 Diguanylate cyclase, GGDEF domain E4185_14140 PF07694 5TMR of 5TMR-LYT E4185_14145 PF07690 Major Facilitator Superfamily E4185_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_14150 PF05231 MASE1 E4185_14150 PF07730 Histidine kinase E4185_14155 PF00196 Bacterial regulatory proteins, luxR family E4185_14155 PF00072 Response regulator receiver domain E4185_14160 PF14760 Rnk N-terminus E4185_14160 PF01272 Transcription elongation factor, GreA/GreB, C-term E4185_14180 PF00245 Alkaline phosphatase E4185_14185 PF00245 Alkaline phosphatase E4185_14190 PF01926 50S ribosome-binding GTPase E4185_14195 PF07690 Major Facilitator Superfamily E4185_14200 PF00850 Histone deacetylase domain E4185_14210 PF13307 Helicase C-terminal domain E4185_14210 PF06733 DEAD_2 E4185_14215 PF13609 Gram-negative porin E4185_14225 PF00155 Aminotransferase class I and II E4185_14230 PF05872 Bacterial protein of unknown function (DUF853) E4185_14245 PF03772 Competence protein E4185_14245 PF00753 Metallo-beta-lactamase superfamily E4185_14250 PF00005 ABC transporter E4185_14250 PF00664 ABC transporter transmembrane region E4185_14255 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E4185_14260 PF03966 Trm112p-like protein E4185_14265 PF02348 Cytidylyltransferase E4185_14270 PF00196 Bacterial regulatory proteins, luxR family E4185_14270 PF00072 Response regulator receiver domain E4185_14280 PF01066 CDP-alcohol phosphatidyltransferase E4185_14300 PF00589 Phage integrase family E4185_14330 PF00271 Helicase conserved C-terminal domain E4185_14330 PF00176 SNF2 family N-terminal domain E4185_14350 PF02899 Phage integrase, N-terminal SAM-like domain E4185_14350 PF00589 Phage integrase family E4185_14360 PF13358 DDE superfamily endonuclease E4185_14360 PF13592 Winged helix-turn helix E4185_14370 PF13592 Winged helix-turn helix E4185_14370 PF13358 DDE superfamily endonuclease E4185_14380 PF13358 DDE superfamily endonuclease E4185_14380 PF13592 Winged helix-turn helix E4185_14390 PF05598 Transposase domain (DUF772) E4185_14390 PF01609 Transposase DDE domain E4185_14400 PF05154 TM2 domain E4185_14430 PF02661 Fic/DOC family E4185_14430 PF13784 Fic/DOC family N-terminal E4185_14440 PF13417 Glutathione S-transferase, N-terminal domain E4185_14440 PF00043 Glutathione S-transferase, C-terminal domain E4185_14445 PF04226 Transglycosylase associated protein E4185_14450 PF00149 Calcineurin-like phosphoesterase E4185_14460 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4185_14465 PF01406 tRNA synthetases class I (C) catalytic domain E4185_14465 PF09190 DALR domain E4185_14500 PF13185 GAF domain E4185_14500 PF00990 Diguanylate cyclase, GGDEF domain E4185_14535 PF01169 Uncharacterized protein family UPF0016 E4185_14540 PF01253 Translation initiation factor SUI1 E4185_14550 PF07670 Nucleoside recognition E4185_14550 PF07664 Ferrous iron transport protein B C terminus E4185_14550 PF02421 Ferrous iron transport protein B E4185_14560 PF00483 Nucleotidyl transferase E4185_14565 PF00437 Type II/IV secretion system protein E4185_14580 PF01032 FecCD transport family E4185_14585 PF00005 ABC transporter E4185_14590 PF00793 DAHP synthetase I family E4185_14595 PF01219 Prokaryotic diacylglycerol kinase E4185_14600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4185_14600 PF01842 ACT domain E4185_14600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4185_14605 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4185_14610 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4185_14625 PF01113 Dihydrodipicolinate reductase, N-terminus E4185_14625 PF05173 Dihydrodipicolinate reductase, C-terminus E4185_14630 PF00117 Glutamine amidotransferase class-I E4185_14630 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E4185_14635 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4185_14635 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E4185_14635 PF02142 MGS-like domain E4185_14645 PF00990 Diguanylate cyclase, GGDEF domain E4185_14650 PF07759 Protein of unknown function (DUF1615) E4185_14655 PF08378 Nuclease-related domain E4185_14670 PF00270 DEAD/DEAH box helicase E4185_14670 PF00271 Helicase conserved C-terminal domain E4185_14685 PF00376 MerR family regulatory protein E4185_14685 PF09278 MerR, DNA binding E4185_14695 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_14695 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4185_14700 PF01645 Conserved region in glutamate synthase E4185_14700 PF04898 Glutamate synthase central domain E4185_14700 PF00310 Glutamine amidotransferases class-II E4185_14700 PF01493 GXGXG motif E4185_14705 PF16199 Radical_SAM C-terminal domain E4185_14705 PF04055 Radical SAM superfamily E4185_14760 PF00324 Amino acid permease E4185_14770 PF03618 Kinase/pyrophosphorylase E4185_14775 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4185_14775 PF02896 PEP-utilising enzyme, TIM barrel domain E4185_14775 PF00391 PEP-utilising enzyme, mobile domain E4185_14785 PF01483 Proprotein convertase P-domain E4185_14785 PF00082 Subtilase family E4185_14790 PF00005 ABC transporter E4185_14800 PF05598 Transposase domain (DUF772) E4185_14800 PF01609 Transposase DDE domain E4185_14810 PF03180 NLPA lipoprotein E4185_14815 PF01569 PAP2 superfamily E4185_14820 PF11890 Domain of unknown function (DUF3410) E4185_14820 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4185_14820 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4185_14825 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4185_14825 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4185_14835 PF01416 tRNA pseudouridine synthase E4185_14840 PF17848 Acetyl-coA carboxylase zinc finger domain E4185_14840 PF01039 Carboxyl transferase domain E4185_14845 PF08245 Mur ligase middle domain E4185_14845 PF02875 Mur ligase family, glutamate ligase domain E4185_14850 PF05036 Sporulation related domain E4185_14855 PF04358 DsrC like protein E4185_14860 PF12805 FUSC-like inner membrane protein yccS E4185_14865 PF01027 Inhibitor of apoptosis-promoting Bax1 E4185_14875 PF04303 PrpF protein E4185_14880 PF00330 Aconitase family (aconitate hydratase) E4185_14880 PF00694 Aconitase C-terminal domain E4185_14885 PF00285 Citrate synthase, C-terminal domain E4185_14895 PF08240 Alcohol dehydrogenase GroES-like domain E4185_14895 PF00107 Zinc-binding dehydrogenase E4185_14905 PF05853 beta-keto acid cleavage enzyme E4185_14910 PF07690 Major Facilitator Superfamily E4185_14920 PF03601 Conserved hypothetical protein 698 E4185_14925 PF01144 Coenzyme A transferase E4185_14930 PF01144 Coenzyme A transferase E4185_14945 PF14870 Photosynthesis system II assembly factor YCF48 E4185_14975 PF08448 PAS fold E4185_14975 PF00990 Diguanylate cyclase, GGDEF domain E4185_14980 PF00849 RNA pseudouridylate synthase E4185_14990 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_14995 PF04209 homogentisate 1,2-dioxygenase E4185_15005 PF14497 Glutathione S-transferase, C-terminal domain E4185_15005 PF02798 Glutathione S-transferase, N-terminal domain E4185_15015 PF01609 Transposase DDE domain E4185_15015 PF13006 Insertion element 4 transposase N-terminal E4185_15020 PF13537 Glutamine amidotransferase domain E4185_15020 PF00733 Asparagine synthase E4185_15030 PF13344 Haloacid dehalogenase-like hydrolase E4185_15035 PF00962 Adenosine/AMP deaminase E4185_15040 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4185_15045 PF03471 Transporter associated domain E4185_15045 PF03741 Integral membrane protein TerC family E4185_15065 PF03061 Thioesterase superfamily E4185_15070 PF03880 DbpA RNA binding domain E4185_15070 PF00270 DEAD/DEAH box helicase E4185_15070 PF00271 Helicase conserved C-terminal domain E4185_15080 PF07690 Major Facilitator Superfamily E4185_15085 PF03553 Na+/H+ antiporter family E4185_15085 PF13726 Na+-H+ antiporter family E4185_15090 PF00929 Exonuclease E4185_15095 PF00672 HAMP domain E4185_15095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_15095 PF12729 Four helix bundle sensory module for signal transduction E4185_15100 PF00691 OmpA family E4185_15100 PF18393 MotY N-terminal domain E4185_15105 PF00459 Inositol monophosphatase family E4185_15120 PF02798 Glutathione S-transferase, N-terminal domain E4185_15120 PF00043 Glutathione S-transferase, C-terminal domain E4185_15125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_15130 PF00528 Binding-protein-dependent transport system inner membrane component E4185_15135 PF00528 Binding-protein-dependent transport system inner membrane component E4185_15135 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_15140 PF00005 ABC transporter E4185_15140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_15145 PF07690 Major Facilitator Superfamily E4185_15155 PF05164 Cell division protein ZapA E4185_15160 PF03695 Uncharacterised protein family (UPF0149) E4185_15165 PF01494 FAD binding domain E4185_15170 PF01494 FAD binding domain E4185_15175 PF01571 Aminomethyltransferase folate-binding domain E4185_15175 PF08669 Glycine cleavage T-protein C-terminal barrel domain E4185_15180 PF01597 Glycine cleavage H-protein E4185_15185 PF02347 Glycine cleavage system P-protein E4185_15190 PF00512 His Kinase A (phospho-acceptor) domain E4185_15190 PF00672 HAMP domain E4185_15190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_15195 PF00872 Transposase, Mutator family E4185_15205 PF08241 Methyltransferase domain E4185_15220 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_15220 PF13192 Thioredoxin domain E4185_15225 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4185_15225 PF00578 AhpC/TSA family E4185_15230 PF00571 CBS domain E4185_15235 PF02547 Queuosine biosynthesis protein E4185_15240 PF01702 Queuine tRNA-ribosyltransferase E4185_15245 PF02699 Preprotein translocase subunit E4185_15250 PF07549 SecD/SecF GG Motif E4185_15250 PF13721 SecD export protein N-terminal TM region E4185_15250 PF02355 Protein export membrane protein E4185_15260 PF00581 Rhodanese-like domain E4185_15265 PF07719 Tetratricopeptide repeat E4185_15265 PF13181 Tetratricopeptide repeat E4185_15270 PF01136 Peptidase family U32 E4185_15275 PF01136 Peptidase family U32 E4185_15280 PF02036 SCP-2 sterol transfer family E4185_15290 PF00588 SpoU rRNA Methylase family E4185_15295 PF02082 Transcriptional regulator E4185_15300 PF00266 Aminotransferase class-V E4185_15305 PF01592 NifU-like N terminal domain E4185_15310 PF01521 Iron-sulphur cluster biosynthesis E4185_15320 PF00012 Hsp70 protein E4185_15325 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_15330 PF00883 Cytosol aminopeptidase family, catalytic domain E4185_15330 PF12404 Peptidase E4185_15335 PF00883 Cytosol aminopeptidase family, catalytic domain E4185_15335 PF12404 Peptidase E4185_15340 PF00334 Nucleoside diphosphate kinase E4185_15345 PF04055 Radical SAM superfamily E4185_15355 PF13464 Domain of unknown function (DUF4115) E4185_15360 PF04551 GcpE protein E4185_15365 PF03129 Anticodon binding domain E4185_15365 PF13393 Histidyl-tRNA synthetase E4185_15370 PF09976 Tetratricopeptide repeat-like domain E4185_15375 PF13360 PQQ-like domain E4185_15380 PF01926 50S ribosome-binding GTPase E4185_15380 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4185_15390 PF01464 Transglycosylase SLT domain E4185_15390 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_15400 PF00361 Proton-conducting membrane transporter E4185_15405 PF00361 Proton-conducting membrane transporter E4185_15410 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E4185_15410 PF00361 Proton-conducting membrane transporter E4185_15415 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E4185_15420 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E4185_15425 PF12838 4Fe-4S dicluster domain E4185_15430 PF00146 NADH dehydrogenase E4185_15435 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4185_15435 PF00384 Molybdopterin oxidoreductase E4185_15435 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4185_15450 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E4185_15450 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E4185_15455 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E4185_15460 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E4185_15465 PF00691 OmpA family E4185_15465 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4185_15470 PF01618 MotA/TolQ/ExbB proton channel family E4185_15485 PF04536 TPM domain E4185_15495 PF03411 Penicillin-insensitive murein endopeptidase E4185_15505 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) E4185_15510 PF00248 Aldo/keto reductase family E4185_15525 PF01212 Beta-eliminating lyase E4185_15535 PF00072 Response regulator receiver domain E4185_15540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_15540 PF03466 LysR substrate binding domain E4185_15555 PF03806 AbgT putative transporter family E4185_15560 PF00881 Nitroreductase family E4185_15575 PF07690 Major Facilitator Superfamily E4185_15580 PF03466 LysR substrate binding domain E4185_15580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_15585 PF00925 GTP cyclohydrolase II E4185_15590 PF02224 Cytidylate kinase E4185_15595 PF00575 S1 RNA binding domain E4185_15600 PF00216 Bacterial DNA-binding protein E4185_15615 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E4185_15630 PF06508 Queuosine biosynthesis protein QueC E4185_15635 PF04055 Radical SAM superfamily E4185_15640 PF12843 Putative quorum-sensing-regulated virulence factor E4185_15645 PF01923 Cobalamin adenosyltransferase E4185_15650 PF00816 H-NS histone family E4185_15655 PF03553 Na+/H+ antiporter family E4185_15660 PF00265 Thymidine kinase E4185_15670 PF10722 Putative bacterial sensory transduction regulator E4185_15680 PF00141 Peroxidase E4185_15695 PF07804 HipA-like C-terminal domain E4185_15695 PF13657 HipA N-terminal domain E4185_15795 PF00196 Bacterial regulatory proteins, luxR family E4185_15800 PF10627 Curli assembly protein CsgE E4185_15810 PF03783 Curli production assembly/transport component CsgG E4185_15875 PF00665 Integrase core domain E4185_15880 PF01695 IstB-like ATP binding protein E4185_15910 PF00436 Single-strand binding protein family E4185_15915 PF13438 Domain of unknown function (DUF4113) E4185_15915 PF00817 impB/mucB/samB family E4185_15915 PF11799 impB/mucB/samB family C-terminal domain E4185_15915 PF11798 IMS family HHH motif E4185_15960 PF02463 RecF/RecN/SMC N terminal domain E4185_16005 PF13358 DDE superfamily endonuclease E4185_16040 PF13538 UvrD-like helicase C-terminal domain E4185_16040 PF14490 Helix-hairpin-helix containing domain E4185_16040 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain E4185_16080 PF01548 Transposase E4185_16080 PF02371 Transposase IS116/IS110/IS902 family E4185_16120 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4185_16120 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4185_16125 PF01053 Cys/Met metabolism PLP-dependent enzyme E4185_16135 PF13460 NAD(P)H-binding E4185_16140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_16140 PF03466 LysR substrate binding domain E4185_16145 PF00106 short chain dehydrogenase E4185_16165 PF03466 LysR substrate binding domain E4185_16165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_16170 PF01717 Cobalamin-independent synthase, Catalytic domain E4185_16170 PF08267 Cobalamin-independent synthase, N-terminal domain E4185_16175 PF02272 DHHA1 domain E4185_16175 PF00571 CBS domain E4185_16175 PF01743 Poly A polymerase head domain E4185_16175 PF12627 Probable RNA and SrmB- binding site of polymerase A E4185_16175 PF01368 DHH family E4185_16180 PF07969 Amidohydrolase family E4185_16190 PF01266 FAD dependent oxidoreductase E4185_16195 PF04244 Deoxyribodipyrimidine photo-lyase-related protein E4185_16205 PF00768 D-alanyl-D-alanine carboxypeptidase E4185_16210 PF03918 Cytochrome C biogenesis protein E4185_16215 PF08534 Redoxin E4185_16225 PF03916 Polysulphide reductase, NrfD E4185_16230 PF13247 4Fe-4S dicluster domain E4185_16230 PF00037 4Fe-4S binding domain E4185_16235 PF13435 Cytochrome c554 and c-prime E4185_16235 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) E4185_16240 PF02335 Cytochrome c552 E4185_16250 PF02754 Cysteine-rich domain E4185_16250 PF13183 4Fe-4S dicluster domain E4185_16260 PF01266 FAD dependent oxidoreductase E4185_16260 PF04324 BFD-like [2Fe-2S] binding domain E4185_16265 PF02810 SEC-C motif E4185_16270 PF00672 HAMP domain E4185_16270 PF17200 Single Cache domain 2 E4185_16270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_16275 PF01047 MarR family E4185_16275 PF00480 ROK family E4185_16280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_16280 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E4185_16280 PF00989 PAS fold E4185_16280 PF17203 Single cache domain 3 E4185_16285 PF00072 Response regulator receiver domain E4185_16310 PF06826 Predicted Permease Membrane Region E4185_16310 PF02080 TrkA-C domain E4185_16325 PF12344 Ultra-violet resistance protein B E4185_16325 PF02151 UvrB/uvrC motif E4185_16325 PF00271 Helicase conserved C-terminal domain E4185_16325 PF17757 UvrB interaction domain E4185_16325 PF04851 Type III restriction enzyme, res subunit E4185_16335 PF09335 SNARE associated Golgi protein E4185_16350 PF06450 Bacterial Na+/H+ antiporter B (NhaB) E4185_16355 PF07840 FadR C-terminal domain E4185_16355 PF00392 Bacterial regulatory proteins, gntR family E4185_16360 PF04293 SpoVR like protein E4185_16365 PF04285 Protein of unknown function (DUF444) E4185_16370 PF06798 PrkA serine protein kinase C-terminal domain E4185_16370 PF08298 PrkA AAA domain E4185_16375 PF16124 RecQ zinc-binding E4185_16375 PF00271 Helicase conserved C-terminal domain E4185_16375 PF00570 HRDC domain E4185_16375 PF09382 RQC domain E4185_16375 PF00270 DEAD/DEAH box helicase E4185_16380 PF00375 Sodium:dicarboxylate symporter family E4185_16385 PF03222 Tryptophan/tyrosine permease family E4185_16390 PF00293 NUDIX domain E4185_16395 PF04715 Anthranilate synthase component I, N terminal region E4185_16395 PF00425 chorismate binding enzyme E4185_16415 PF00343 Carbohydrate phosphorylase E4185_16425 PF00939 Sodium:sulfate symporter transmembrane region E4185_16430 PF00085 Thioredoxin E4185_16445 PF00664 ABC transporter transmembrane region E4185_16445 PF00005 ABC transporter E4185_16465 PF01575 MaoC like domain E4185_16470 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus E4185_16470 PF00561 alpha/beta hydrolase fold E4185_16490 PF08543 Phosphomethylpyrimidine kinase E4185_16495 PF03992 Antibiotic biosynthesis monooxygenase E4185_16500 PF01261 Xylose isomerase-like TIM barrel E4185_16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_16510 PF03466 LysR substrate binding domain E4185_16520 PF03279 Bacterial lipid A biosynthesis acyltransferase E4185_16540 PF05726 Pirin C-terminal cupin domain E4185_16540 PF02678 Pirin E4185_16550 PF03104 DNA polymerase family B, exonuclease domain E4185_16550 PF00136 DNA polymerase family B E4185_16580 PF01554 MatE E4185_16585 PF06786 Uncharacterised protein family (UPF0253) E4185_16590 PF00677 Lumazine binding domain E4185_16600 PF13419 Haloacid dehalogenase-like hydrolase E4185_16605 PF02222 ATP-grasp domain E4185_16605 PF01370 NAD dependent epimerase/dehydratase family E4185_16610 PF00892 EamA-like transporter family E4185_16615 PF02525 Flavodoxin-like fold E4185_16645 PF04269 Protein of unknown function, DUF440 E4185_16650 PF00912 Transglycosylase E4185_16655 PF04269 Protein of unknown function, DUF440 E4185_16660 PF03776 Septum formation topological specificity factor MinE E4185_16665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4185_16670 PF05209 Septum formation inhibitor MinC, N-terminal domain E4185_16670 PF03775 Septum formation inhibitor MinC, C-terminal domain E4185_16675 PF05166 YcgL domain E4185_16680 PF13406 Transglycosylase SLT domain E4185_16685 PF03315 Serine dehydratase beta chain E4185_16685 PF03313 Serine dehydratase alpha chain E4185_16695 PF03315 Serine dehydratase beta chain E4185_16695 PF03313 Serine dehydratase alpha chain E4185_16700 PF06865 Pyrimidine/purine nucleoside phosphorylase E4185_16740 PF01609 Transposase DDE domain E4185_16740 PF13808 DDE_Tnp_1-associated E4185_16770 PF00872 Transposase, Mutator family E4185_16785 PF13005 zinc-finger binding domain of transposase IS66 E4185_16785 PF13007 Transposase C of IS166 homeodomain E4185_16785 PF13817 IS66 C-terminal element E4185_16785 PF03050 Transposase IS66 family E4185_16845 PF01609 Transposase DDE domain E4185_16845 PF13808 DDE_Tnp_1-associated E4185_16920 PF00376 MerR family regulatory protein E4185_16920 PF09278 MerR, DNA binding E4185_16925 PF02803 Thiolase, C-terminal domain E4185_16925 PF00108 Thiolase, N-terminal domain E4185_16930 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4185_16935 PF00563 EAL domain E4185_16935 PF08668 HDOD domain E4185_16940 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4185_16945 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4185_16965 PF13519 von Willebrand factor type A domain E4185_16965 PF07584 Aerotolerance regulator N-terminal E4185_16980 PF01882 Protein of unknown function DUF58 E4185_16990 PF07726 ATPase family associated with various cellular activities (AAA) E4185_16990 PF17863 AAA lid domain E4185_16995 PF02803 Thiolase, C-terminal domain E4185_16995 PF00108 Thiolase, N-terminal domain E4185_17000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4185_17000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4185_17000 PF00378 Enoyl-CoA hydratase/isomerase E4185_17010 PF07152 YaeQ protein E4185_17025 PF07690 Major Facilitator Superfamily E4185_17030 PF00005 ABC transporter E4185_17035 PF01032 FecCD transport family E4185_17050 PF05433 Glycine zipper 2TM domain E4185_17055 PF13193 AMP-binding enzyme C-terminal domain E4185_17055 PF00501 AMP-binding enzyme E4185_17060 PF13280 WYL domain E4185_17060 PF08279 HTH domain E4185_17070 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E4185_17070 PF01502 Phosphoribosyl-AMP cyclohydrolase E4185_17075 PF00977 Histidine biosynthesis protein E4185_17090 PF00072 Response regulator receiver domain E4185_17095 PF00977 Histidine biosynthesis protein E4185_17100 PF00117 Glutamine amidotransferase class-I E4185_17105 PF00475 Imidazoleglycerol-phosphate dehydratase E4185_17105 PF08645 Polynucleotide kinase 3 phosphatase E4185_17110 PF00155 Aminotransferase class I and II E4185_17120 PF08029 HisG, C-terminal domain E4185_17120 PF01634 ATP phosphoribosyltransferase E4185_17130 PF04851 Type III restriction enzyme, res subunit E4185_17130 PF13307 Helicase C-terminal domain E4185_17155 PF01609 Transposase DDE domain E4185_17170 PF13193 AMP-binding enzyme C-terminal domain E4185_17170 PF00501 AMP-binding enzyme E4185_17175 PF01612 3'-5' exonuclease E4185_17175 PF00570 HRDC domain E4185_17185 PF00892 EamA-like transporter family E4185_17195 PF01207 Dihydrouridine synthase (Dus) E4185_17200 PF04304 Protein of unknown function (DUF454) E4185_17205 PF00156 Phosphoribosyl transferase domain E4185_17215 PF02575 YbaB/EbfC DNA-binding family E4185_17220 PF00857 Isochorismatase family E4185_17225 PF02678 Pirin E4185_17225 PF05726 Pirin C-terminal cupin domain E4185_17240 PF00196 Bacterial regulatory proteins, luxR family E4185_17240 PF00072 Response regulator receiver domain E4185_17245 PF02272 DHHA1 domain E4185_17245 PF01368 DHH family E4185_17245 PF00571 CBS domain E4185_17245 PF01743 Poly A polymerase head domain E4185_17250 PF04408 Helicase associated domain (HA2) E4185_17250 PF00271 Helicase conserved C-terminal domain E4185_17250 PF00270 DEAD/DEAH box helicase E4185_17250 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E4185_17250 PF11898 Domain of unknown function (DUF3418) E4185_17260 PF01386 Ribosomal L25p family E4185_17270 PF00072 Response regulator receiver domain E4185_17275 PF00753 Metallo-beta-lactamase superfamily E4185_17285 PF02769 AIR synthase related protein, C-terminal domain E4185_17285 PF00586 AIR synthase related protein, N-terminal domain E4185_17295 PF10672 S-adenosylmethionine-dependent methyltransferase E4185_17295 PF17785 PUA-like domain E4185_17300 PF01609 Transposase DDE domain E4185_17300 PF13006 Insertion element 4 transposase N-terminal E4185_17305 PF00672 HAMP domain E4185_17305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_17305 PF12729 Four helix bundle sensory module for signal transduction E4185_17310 PF00708 Acylphosphatase E4185_17320 PF08264 Anticodon-binding domain of tRNA E4185_17320 PF09334 tRNA synthetases class I (M) E4185_17320 PF01588 Putative tRNA binding domain E4185_17325 PF10609 NUBPL iron-transfer P-loop NTPase E4185_17330 PF00485 Phosphoribulokinase / Uridine kinase family E4185_17335 PF00692 dUTPase E4185_17340 PF01384 Phosphate transporter family E4185_17345 PF00665 Integrase core domain E4185_17355 PF01526 Tn3 transposase DDE domain E4185_17355 PF13700 Domain of unknown function (DUF4158) E4185_17360 PF00239 Resolvase, N terminal domain E4185_17360 PF02796 Helix-turn-helix domain of resolvase E4185_17370 PF00589 Phage integrase family E4185_17370 PF13495 Phage integrase, N-terminal SAM-like domain E4185_17375 PF06442 R67 dihydrofolate reductase E4185_17380 PF00132 Bacterial transferase hexapeptide (six repeats) E4185_17385 PF13427 Domain of unknown function (DUF4111) E4185_17385 PF01909 Nucleotidyltransferase domain E4185_17390 PF00893 Small Multidrug Resistance protein E4185_17395 PF00809 Pterin binding enzyme E4185_17415 PF13610 DDE domain E4185_17430 PF00239 Resolvase, N terminal domain E4185_17430 PF02796 Helix-turn-helix domain of resolvase E4185_17450 PF07690 Major Facilitator Superfamily E4185_17465 PF01526 Tn3 transposase DDE domain E4185_17465 PF13700 Domain of unknown function (DUF4158) E4185_17470 PF00239 Resolvase, N terminal domain E4185_17470 PF02796 Helix-turn-helix domain of resolvase E4185_17480 PF00872 Transposase, Mutator family E4185_17485 PF00575 S1 RNA binding domain E4185_17485 PF10150 Ribonuclease E/G family E4185_17485 PF12111 Polyribonucleotide phosphorylase C terminal E4185_17490 PF00849 RNA pseudouridylate synthase E4185_17490 PF01479 S4 domain E4185_17495 PF13419 Haloacid dehalogenase-like hydrolase E4185_17500 PF02545 Maf-like protein E4185_17510 PF02620 Large ribosomal RNA subunit accumulation protein YceD E4185_17515 PF01783 Ribosomal L32p protein family E4185_17520 PF02504 Fatty acid synthesis protein E4185_17525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4185_17525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4185_17530 PF00698 Acyl transferase domain E4185_17540 PF00550 Phosphopantetheine attachment site E4185_17545 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_17545 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_17550 PF01063 Amino-transferase class IV E4185_17555 PF02618 YceG-like family E4185_17560 PF02223 Thymidylate kinase E4185_17565 PF09115 DNA polymerase III, delta subunit, C terminal E4185_17570 PF01026 TatD related DNase E4185_17575 PF00589 Phage integrase family E4185_17605 PF02470 MlaD protein E4185_17610 PF04403 Paraquat-inducible protein A E4185_17620 PF07130 YebG protein E4185_17625 PF02899 Phage integrase, N-terminal SAM-like domain E4185_17625 PF00589 Phage integrase family E4185_17655 PF13737 Transposase DDE domain E4185_17690 PF05840 Bacteriophage replication gene A protein (GPA) E4185_17705 PF05362 Lon protease (S16) C-terminal proteolytic domain E4185_17705 PF13654 AAA domain E4185_17710 PF07977 FabA-like domain E4185_17715 PF04957 Ribosome modulation factor E4185_17725 PF00005 ABC transporter E4185_17725 PF16326 ABC transporter C-terminal domain E4185_17725 PF12848 ABC transporter E4185_17735 PF10672 S-adenosylmethionine-dependent methyltransferase E4185_17735 PF02926 THUMP domain E4185_17735 PF01170 Putative RNA methylase family UPF0020 E4185_17740 PF07126 Cell-division protein ZapC E4185_17745 PF01180 Dihydroorotate dehydrogenase E4185_17750 PF05088 Bacterial NAD-glutamate dehydrogenase E4185_17760 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E4185_17760 PF11940 Domain of unknown function (DUF3458) Ig-like fold E4185_17760 PF01433 Peptidase family M1 domain E4185_17765 PF17804 Tail specific protease N-terminal domain E4185_17765 PF11818 C-terminal domain of tail specific protease (DUF3340) E4185_17765 PF03572 Peptidase family S41 E4185_17765 PF00595 PDZ domain E4185_17770 PF17516 ProQ C-terminal domain E4185_17770 PF04352 ProQ/FINO family E4185_17775 PF13185 GAF domain E4185_17785 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4185_17800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E4185_17800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP E4185_17810 PF00403 Heavy-metal-associated domain E4185_17825 PF13545 Crp-like helix-turn-helix domain E4185_17825 PF00027 Cyclic nucleotide-binding domain E4185_17830 PF00582 Universal stress protein family E4185_17835 PF01171 PP-loop family E4185_17850 PF13417 Glutathione S-transferase, N-terminal domain E4185_17855 PF05025 RbsD / FucU transport protein family E4185_17860 PF00005 ABC transporter E4185_17865 PF02653 Branched-chain amino acid transport system / permease component E4185_17870 PF13407 Periplasmic binding protein domain E4185_17875 PF00294 pfkB family carbohydrate kinase E4185_17880 PF00356 Bacterial regulatory proteins, lacI family E4185_17885 PF03707 Bacterial signalling protein N terminal repeat E4185_17885 PF00563 EAL domain E4185_17885 PF00990 Diguanylate cyclase, GGDEF domain E4185_17895 PF02146 Sir2 family E4185_17915 PF00216 Bacterial DNA-binding protein E4185_17920 PF03483 B3/4 domain E4185_17920 PF03484 tRNA synthetase B5 domain E4185_17920 PF03147 Ferredoxin-fold anticodon binding domain E4185_17920 PF01588 Putative tRNA binding domain E4185_17920 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4185_17925 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E4185_17925 PF01409 tRNA synthetases class II core domain (F) E4185_17930 PF00453 Ribosomal protein L20 E4185_17935 PF01632 Ribosomal protein L35 E4185_17940 PF05198 Translation initiation factor IF-3, N-terminal domain E4185_17940 PF00707 Translation initiation factor IF-3, C-terminal domain E4185_17945 PF03129 Anticodon binding domain E4185_17945 PF02824 TGS domain E4185_17945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4185_17945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4185_17960 PF04055 Radical SAM superfamily E4185_17965 PF03989 DNA gyrase C-terminal domain, beta-propeller E4185_17965 PF00521 DNA gyrase/topoisomerase IV, subunit A E4185_17975 PF13419 Haloacid dehalogenase-like hydrolase E4185_17980 PF03477 ATP cone domain E4185_17980 PF02867 Ribonucleotide reductase, barrel domain E4185_17980 PF00317 Ribonucleotide reductase, all-alpha domain E4185_17985 PF00268 Ribonucleotide reductase, small chain E4185_17990 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_17995 PF03562 MltA specific insert domain E4185_17995 PF06725 3D domain E4185_18000 PF06945 Protein of unknown function (DUF1289) E4185_18005 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4185_18005 PF02378 Phosphotransferase system, EIIC E4185_18010 PF00294 pfkB family carbohydrate kinase E4185_18015 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4185_18015 PF00381 PTS HPr component phosphorylation site E4185_18020 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4185_18020 PF00356 Bacterial regulatory proteins, lacI family E4185_18025 PF03222 Tryptophan/tyrosine permease family E4185_18030 PF01124 MAPEG family E4185_18035 PF00271 Helicase conserved C-terminal domain E4185_18035 PF00270 DEAD/DEAH box helicase E4185_18045 PF01264 Chorismate synthase E4185_18065 PF00300 Histidine phosphatase superfamily (branch 1) E4185_18085 PF08329 Chitinase A, N-terminal domain E4185_18085 PF00704 Glycosyl hydrolases family 18 E4185_18095 PF08274 PhnA Zinc-Ribbon E4185_18095 PF03831 PhnA domain E4185_18105 PF01810 LysE type translocator E4185_18115 PF02567 Phenazine biosynthesis-like protein E4185_18145 PF05036 Sporulation related domain E4185_18145 PF03330 Lytic transglycolase E4185_18155 PF04288 MukE-like family E4185_18160 PF17192 MukF middle domain E4185_18160 PF17193 MukF C-terminal domain E4185_18160 PF03882 MukF winged-helix domain E4185_18165 PF13847 Methyltransferase domain E4185_18170 PF02698 DUF218 domain E4185_18175 PF00121 Triosephosphate isomerase E4185_18180 PF00365 Phosphofructokinase E4185_18185 PF07687 Peptidase dimerisation domain E4185_18185 PF01546 Peptidase family M20/M25/M40 E4185_18190 PF13419 Haloacid dehalogenase-like hydrolase E4185_18195 PF02789 Cytosol aminopeptidase family, N-terminal domain E4185_18195 PF00883 Cytosol aminopeptidase family, catalytic domain E4185_18245 PF11398 Protein of unknown function (DUF2813) E4185_18250 PF01965 DJ-1/PfpI family E4185_18250 PF12833 Helix-turn-helix domain E4185_18260 PF03466 LysR substrate binding domain E4185_18260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_18275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_18275 PF18029 Glyoxalase-like domain E4185_18285 PF01820 D-ala D-ala ligase N-terminus E4185_18285 PF07478 D-ala D-ala ligase C-terminus E4185_18295 PF00255 Glutathione peroxidase E4185_18300 PF00270 DEAD/DEAH box helicase E4185_18300 PF00271 Helicase conserved C-terminal domain E4185_18305 PF13673 Acetyltransferase (GNAT) domain E4185_18315 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E4185_18330 PF00293 NUDIX domain E4185_18335 PF13673 Acetyltransferase (GNAT) domain E4185_18340 PF00990 Diguanylate cyclase, GGDEF domain E4185_18350 PF00990 Diguanylate cyclase, GGDEF domain E4185_18350 PF07694 5TMR of 5TMR-LYT E4185_18355 PF13808 DDE_Tnp_1-associated E4185_18355 PF01609 Transposase DDE domain E4185_18365 PF00933 Glycosyl hydrolase family 3 N terminal domain E4185_18375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_18375 PF03466 LysR substrate binding domain E4185_18390 PF03466 LysR substrate binding domain E4185_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_18395 PF07694 5TMR of 5TMR-LYT E4185_18395 PF00990 Diguanylate cyclase, GGDEF domain E4185_18405 PF00384 Molybdopterin oxidoreductase E4185_18410 PF02634 FdhD/NarQ family E4185_18425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_18425 PF03466 LysR substrate binding domain E4185_18430 PF13808 DDE_Tnp_1-associated E4185_18430 PF01609 Transposase DDE domain E4185_18435 PF13407 Periplasmic binding protein domain E4185_18440 PF00005 ABC transporter E4185_18445 PF02653 Branched-chain amino acid transport system / permease component E4185_18475 PF02796 Helix-turn-helix domain of resolvase E4185_18475 PF00239 Resolvase, N terminal domain E4185_18500 PF02796 Helix-turn-helix domain of resolvase E4185_18500 PF00239 Resolvase, N terminal domain E4185_18505 PF05052 MerE protein E4185_18510 PF13411 MerR HTH family regulatory protein E4185_18515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_18515 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_18515 PF00403 Heavy-metal-associated domain E4185_18525 PF00403 Heavy-metal-associated domain E4185_18530 PF02411 MerT mercuric transport protein E4185_18535 PF09278 MerR, DNA binding E4185_18535 PF00376 MerR family regulatory protein E4185_18550 PF00809 Pterin binding enzyme E4185_18555 PF00893 Small Multidrug Resistance protein E4185_18560 PF01909 Nucleotidyltransferase domain E4185_18560 PF13427 Domain of unknown function (DUF4111) E4185_18565 PF13495 Phage integrase, N-terminal SAM-like domain E4185_18565 PF00589 Phage integrase family E4185_18580 PF04002 RadC-like JAB domain E4185_18615 PF01420 Type I restriction modification DNA specificity domain E4185_18625 PF02384 N-6 DNA Methylase E4185_18645 PF01925 Sulfite exporter TauE/SafE E4185_18650 PF13520 Amino acid permease E4185_18660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4185_18660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4185_18665 PF00378 Enoyl-CoA hydratase/isomerase E4185_18670 PF00378 Enoyl-CoA hydratase/isomerase E4185_18675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4185_18675 PF02770 Acyl-CoA dehydrogenase, middle domain E4185_18675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4185_18680 PF00171 Aldehyde dehydrogenase family E4185_18685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4185_18685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4185_18685 PF02770 Acyl-CoA dehydrogenase, middle domain E4185_18690 PF01039 Carboxyl transferase domain E4185_18695 PF00378 Enoyl-CoA hydratase/isomerase E4185_18705 PF00682 HMGL-like E4185_18710 PF00376 MerR family regulatory protein E4185_18710 PF09278 MerR, DNA binding E4185_18720 PF01184 GPR1/FUN34/yaaH family E4185_18725 PF06167 Glucose-regulated metallo-peptidase M90 E4185_18735 PF01235 Sodium:alanine symporter family E4185_18740 PF00378 Enoyl-CoA hydratase/isomerase E4185_18750 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4185_18750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4185_18750 PF14579 Helix-hairpin-helix motif E4185_18750 PF02811 PHP domain E4185_18750 PF00929 Exonuclease E4185_18755 PF04341 Protein of unknown function, DUF485 E4185_18760 PF00474 Sodium:solute symporter family E4185_18765 PF00005 ABC transporter E4185_18765 PF12848 ABC transporter E4185_18770 PF13145 PPIC-type PPIASE domain E4185_18775 PF00216 Bacterial DNA-binding protein E4185_18780 PF05362 Lon protease (S16) C-terminal proteolytic domain E4185_18780 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4185_18780 PF00004 ATPase family associated with various cellular activities (AAA) E4185_18785 PF10431 C-terminal, D2-small domain, of ClpB protein E4185_18785 PF07724 AAA domain (Cdc48 subfamily) E4185_18785 PF06689 ClpX C4-type zinc finger E4185_18790 PF00574 Clp protease E4185_18795 PF05697 Bacterial trigger factor protein (TF) E4185_18795 PF05698 Bacterial trigger factor protein (TF) C-terminus E4185_18795 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_18815 PF12704 MacB-like periplasmic core domain E4185_18815 PF02687 FtsX-like permease family E4185_18820 PF00005 ABC transporter E4185_18835 PF02559 CarD-like/TRCF domain E4185_18835 PF17757 UvrB interaction domain E4185_18835 PF03461 TRCF domain E4185_18835 PF00270 DEAD/DEAH box helicase E4185_18835 PF00271 Helicase conserved C-terminal domain E4185_18840 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E4185_18845 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_18850 PF01609 Transposase DDE domain E4185_18850 PF13006 Insertion element 4 transposase N-terminal E4185_18855 PF00892 EamA-like transporter family E4185_18865 PF00300 Histidine phosphatase superfamily (branch 1) E4185_18875 PF05724 Thiopurine S-methyltransferase (TPMT) E4185_18910 PF00958 GMP synthase C terminal domain E4185_18910 PF00117 Glutamine amidotransferase class-I E4185_18910 PF02540 NAD synthase E4185_18915 PF00478 IMP dehydrogenase / GMP reductase domain E4185_18915 PF00571 CBS domain E4185_18925 PF01373 Glycosyl hydrolase family 14 E4185_18925 PF03423 Carbohydrate binding domain (family 25) E4185_18925 PF00128 Alpha amylase, catalytic domain E4185_18935 PF13742 OB-fold nucleic acid binding domain E4185_18935 PF02601 Exonuclease VII, large subunit E4185_18940 PF04055 Radical SAM superfamily E4185_18945 PF00691 OmpA family E4185_18950 PF17152 Periplasmic sensor domain E4185_18950 PF00990 Diguanylate cyclase, GGDEF domain E4185_18955 PF13689 YfiR/HmsC-like E4185_18960 PF00158 Sigma-54 interaction domain E4185_18960 PF18024 Helix-turn-helix domain E4185_18965 PF01329 Pterin 4 alpha carbinolamine dehydratase E4185_18970 PF00351 Biopterin-dependent aromatic amino acid hydroxylase E4185_18975 PF05128 Domain of unknown function (DUF697) E4185_18980 PF04317 YcjX-like family, DUF463 E4185_18990 PF06667 Phage shock protein B E4185_18995 PF04012 PspA/IM30 family E4185_19000 PF00158 Sigma-54 interaction domain E4185_19000 PF02954 Bacterial regulatory protein, Fis family E4185_19010 PF00528 Binding-protein-dependent transport system inner membrane component E4185_19015 PF00528 Binding-protein-dependent transport system inner membrane component E4185_19015 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_19020 PF00005 ABC transporter E4185_19020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_19030 PF00005 ABC transporter E4185_19035 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E4185_19040 PF00356 Bacterial regulatory proteins, lacI family E4185_19045 PF02378 Phosphotransferase system, EIIC E4185_19045 PF00367 phosphotransferase system, EIIB E4185_19050 PF00232 Glycosyl hydrolase family 1 E4185_19055 PF00156 Phosphoribosyl transferase domain E4185_19060 PF02674 Colicin V production protein E4185_19065 PF02403 Seryl-tRNA synthetase N-terminal domain E4185_19065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4185_19070 PF12002 MgsA AAA+ ATPase C terminal E4185_19070 PF16193 AAA C-terminal domain E4185_19070 PF00004 ATPase family associated with various cellular activities (AAA) E4185_19075 PF03548 Outer membrane lipoprotein carrier protein LolA E4185_19080 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E4185_19080 PF01580 FtsK/SpoIIIE family E4185_19080 PF09397 Ftsk gamma domain E4185_19080 PF17854 FtsK alpha domain E4185_19085 PF01037 Lrp/AsnC ligand binding domain E4185_19090 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4185_19090 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4185_19095 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_19100 PF00990 Diguanylate cyclase, GGDEF domain E4185_19105 PF05433 Glycine zipper 2TM domain E4185_19110 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E4185_19115 PF04376 Arginine-tRNA-protein transferase, N terminus E4185_19115 PF04377 Arginine-tRNA-protein transferase, C terminus E4185_19120 PF01176 Translation initiation factor 1A / IF-1 E4185_19125 PF02861 Clp amino terminal domain, pathogenicity island component E4185_19125 PF00004 ATPase family associated with various cellular activities (AAA) E4185_19125 PF07724 AAA domain (Cdc48 subfamily) E4185_19125 PF17871 AAA lid domain E4185_19125 PF10431 C-terminal, D2-small domain, of ClpB protein E4185_19130 PF02617 ATP-dependent Clp protease adaptor protein ClpS E4185_19135 PF00313 'Cold-shock' DNA-binding domain E4185_19140 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4185_19140 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4185_19145 PF00893 Small Multidrug Resistance protein E4185_19155 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding E4185_19155 PF18381 YcaO cyclodehydratase C-terminal domain E4185_19160 PF01226 Formate/nitrite transporter E4185_19165 PF02901 Pyruvate formate lyase-like E4185_19165 PF01228 Glycine radical E4185_19180 PF00266 Aminotransferase class-V E4185_19185 PF00392 Bacterial regulatory proteins, gntR family E4185_19185 PF07702 UTRA domain E4185_19195 PF00005 ABC transporter E4185_19200 PF00528 Binding-protein-dependent transport system inner membrane component E4185_19205 PF01266 FAD dependent oxidoreductase E4185_19210 PF03692 Putative zinc- or iron-chelating domain E4185_19230 PF02629 CoA binding domain E4185_19230 PF00549 CoA-ligase E4185_19235 PF00549 CoA-ligase E4185_19235 PF08442 ATP-grasp domain E4185_19240 PF00364 Biotin-requiring enzyme E4185_19240 PF02817 e3 binding domain E4185_19240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4185_19245 PF16078 2-oxoglutarate dehydrogenase N-terminus E4185_19245 PF00676 Dehydrogenase E1 component E4185_19245 PF16870 2-oxoglutarate dehydrogenase C-terminal E4185_19245 PF02779 Transketolase, pyrimidine binding domain E4185_19250 PF13085 2Fe-2S iron-sulfur cluster binding domain E4185_19255 PF00890 FAD binding domain E4185_19255 PF02910 Fumarate reductase flavoprotein C-term E4185_19260 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4185_19265 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4185_19270 PF00285 Citrate synthase, C-terminal domain E4185_19285 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_19285 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_19300 PF03606 C4-dicarboxylate anaerobic carrier E4185_19315 PF01863 Protein of unknown function DUF45 E4185_19330 PF01197 Ribosomal protein L31 E4185_19335 PF00444 Ribosomal protein L36 E4185_19340 PF12833 Helix-turn-helix domain E4185_19340 PF02311 AraC-like ligand binding domain E4185_19345 PF02653 Branched-chain amino acid transport system / permease component E4185_19350 PF00005 ABC transporter E4185_19355 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4185_19360 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4185_19365 PF00596 Class II Aldolase and Adducin N-terminal domain E4185_19370 PF11762 L-arabinose isomerase C-terminal domain E4185_19370 PF02610 L-arabinose isomerase E4185_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_19375 PF03466 LysR substrate binding domain E4185_19380 PF00155 Aminotransferase class I and II E4185_19385 PF00795 Carbon-nitrogen hydrolase E4185_19390 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_19400 PF09924 Uncharacterised conserved protein (DUF2156) E4185_19400 PF03706 Lysylphosphatidylglycerol synthase TM region E4185_19405 PF00149 Calcineurin-like phosphoesterase E4185_19410 PF08411 Exonuclease C-terminal E4185_19410 PF00929 Exonuclease E4185_19425 PF03788 LrgA family E4185_19430 PF04172 LrgB-like family E4185_19435 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region E4185_19435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4185_19440 PF00501 AMP-binding enzyme E4185_19455 PF03741 Integral membrane protein TerC family E4185_19460 PF00793 DAHP synthetase I family E4185_19465 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4185_19470 PF00266 Aminotransferase class-V E4185_19475 PF00766 Electron transfer flavoprotein FAD-binding domain E4185_19475 PF01012 Electron transfer flavoprotein domain E4185_19480 PF01012 Electron transfer flavoprotein domain E4185_19490 PF01544 CorA-like Mg2+ transporter protein E4185_19495 PF11143 Protein of unknown function (DUF2919) E4185_19510 PF00593 TonB dependent receptor E4185_19510 PF07715 TonB-dependent Receptor Plug Domain E4185_19515 PF01032 FecCD transport family E4185_19520 PF01032 FecCD transport family E4185_19525 PF00005 ABC transporter E4185_19530 PF01648 4'-phosphopantetheinyl transferase superfamily E4185_19530 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E4185_19535 PF01497 Periplasmic binding protein E4185_19540 PF00109 Beta-ketoacyl synthase, N-terminal domain E4185_19540 PF00501 AMP-binding enzyme E4185_19540 PF13193 AMP-binding enzyme C-terminal domain E4185_19540 PF14765 Polyketide synthase dehydratase E4185_19540 PF00550 Phosphopantetheine attachment site E4185_19540 PF08659 KR domain E4185_19540 PF02801 Beta-ketoacyl synthase, C-terminal domain E4185_19540 PF16197 Ketoacyl-synthetase C-terminal extension E4185_19540 PF00668 Condensation domain E4185_19545 PF00550 Phosphopantetheine attachment site E4185_19545 PF00668 Condensation domain E4185_19545 PF13193 AMP-binding enzyme C-terminal domain E4185_19545 PF07993 Male sterility protein E4185_19545 PF00501 AMP-binding enzyme E4185_19560 PF00550 Phosphopantetheine attachment site E4185_19560 PF00857 Isochorismatase family E4185_19565 PF00501 AMP-binding enzyme E4185_19565 PF13193 AMP-binding enzyme C-terminal domain E4185_19570 PF00425 chorismate binding enzyme E4185_19575 PF07273 Protein of unknown function (DUF1439) E4185_19610 PF00294 pfkB family carbohydrate kinase E4185_19620 PF00762 Ferrochelatase E4185_19625 PF05191 Adenylate kinase, active site lid E4185_19630 PF00183 Hsp90 protein E4185_19630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_19635 PF13662 Toprim domain E4185_19635 PF02132 RecR protein E4185_19640 PF05598 Transposase domain (DUF772) E4185_19640 PF01609 Transposase DDE domain E4185_19670 PF14403 Circularly permuted ATP-grasp type 2 E4185_19675 PF14403 Circularly permuted ATP-grasp type 2 E4185_19675 PF04168 A predicted alpha-helical domain with a conserved ER motif. E4185_19705 PF03239 Iron permease FTR1 family E4185_19710 PF01593 Flavin containing amine oxidoreductase E4185_19730 PF07690 Major Facilitator Superfamily E4185_19740 PF03600 Citrate transporter E4185_19750 PF00005 ABC transporter E4185_19765 PF05598 Transposase domain (DUF772) E4185_19765 PF01609 Transposase DDE domain E4185_19770 PF02913 FAD linked oxidases, C-terminal domain E4185_19770 PF01565 FAD binding domain E4185_19775 PF02589 LUD domain E4185_19780 PF02589 LUD domain E4185_19780 PF11870 Domain of unknown function (DUF3390) E4185_19780 PF13183 4Fe-4S dicluster domain E4185_19785 PF02754 Cysteine-rich domain E4185_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_19795 PF03466 LysR substrate binding domain E4185_19805 PF04237 YjbR E4185_19820 PF01625 Peptide methionine sulfoxide reductase E4185_19825 PF00583 Acetyltransferase (GNAT) family E4185_19825 PF00696 Amino acid kinase family E4185_19835 PF00696 Amino acid kinase family E4185_19835 PF01842 ACT domain E4185_19845 PF00884 Sulfatase E4185_19850 PF17676 LD-carboxypeptidase C-terminal domain E4185_19850 PF02016 LD-carboxypeptidase N-terminal domain E4185_19855 PF01906 Putative heavy-metal-binding E4185_19865 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_19870 PF05728 Uncharacterised protein family (UPF0227) E4185_19875 PF08439 Oligopeptidase F E4185_19875 PF01432 Peptidase family M3 E4185_19885 PF05661 Protein of unknown function (DUF808) E4185_19895 PF02355 Protein export membrane protein E4185_19895 PF07549 SecD/SecF GG Motif E4185_19900 PF02355 Protein export membrane protein E4185_19900 PF13721 SecD export protein N-terminal TM region E4185_19900 PF07549 SecD/SecF GG Motif E4185_19905 PF12323 Helix-turn-helix domain E4185_19940 PF01230 HIT domain E4185_19945 PF00672 HAMP domain E4185_19945 PF02743 Cache domain E4185_19945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_19955 PF01979 Amidohydrolase family E4185_19975 PF01385 Probable transposase E4185_19975 PF07282 Putative transposase DNA-binding domain E4185_19975 PF12323 Helix-turn-helix domain E4185_19995 PF00842 Alanine racemase, C-terminal domain E4185_19995 PF01168 Alanine racemase, N-terminal domain E4185_20000 PF03741 Integral membrane protein TerC family E4185_20005 PF00005 ABC transporter E4185_20005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_20010 PF00005 ABC transporter E4185_20010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4185_20015 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20015 PF12911 N-terminal TM domain of oligopeptide transport permease C E4185_20020 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20025 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4185_20030 PF01914 MarC family integral membrane protein E4185_20035 PF00171 Aldehyde dehydrogenase family E4185_20035 PF00465 Iron-containing alcohol dehydrogenase E4185_20040 PF11871 Domain of unknown function (DUF3391) E4185_20040 PF01966 HD domain E4185_20045 PF06580 Histidine kinase E4185_20045 PF07694 5TMR of 5TMR-LYT E4185_20050 PF04397 LytTr DNA-binding domain E4185_20050 PF00072 Response regulator receiver domain E4185_20055 PF02554 Carbon starvation protein CstA E4185_20060 PF00924 Mechanosensitive ion channel E4185_20060 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4185_20060 PF12795 Mechanosensitive ion channel porin domain E4185_20065 PF11742 Protein of unknown function (DUF3302) E4185_20070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_20070 PF00529 HlyD membrane-fusion protein of T1SS E4185_20075 PF04851 Type III restriction enzyme, res subunit E4185_20075 PF00271 Helicase conserved C-terminal domain E4185_20080 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family E4185_20085 PF00462 Glutaredoxin E4185_20095 PF00155 Aminotransferase class I and II E4185_20100 PF03606 C4-dicarboxylate anaerobic carrier E4185_20105 PF07055 Enoyl reductase FAD binding domain E4185_20105 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4185_20105 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4185_20115 PF13426 PAS domain E4185_20115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_20115 PF08447 PAS fold E4185_20125 PF00892 EamA-like transporter family E4185_20130 PF02508 Rnf-Nqr subunit, membrane protein E4185_20135 PF04060 Putative Fe-S cluster E4185_20140 PF10531 SLBB domain E4185_20140 PF13375 RnfC Barrel sandwich hybrid domain E4185_20140 PF13237 4Fe-4S dicluster domain E4185_20140 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4185_20145 PF03116 NQR2, RnfD, RnfE family E4185_20150 PF04205 FMN-binding domain E4185_20155 PF02508 Rnf-Nqr subunit, membrane protein E4185_20160 PF00730 HhH-GPD superfamily base excision DNA repair protein E4185_20160 PF10576 Iron-sulfur binding domain of endonuclease III E4185_20160 PF00633 Helix-hairpin-helix motif E4185_20165 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4185_20175 PF02535 ZIP Zinc transporter E4185_20180 PF01048 Phosphorylase superfamily E4185_20190 PF01497 Periplasmic binding protein E4185_20195 PF02719 Polysaccharide biosynthesis protein E4185_20200 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4185_20210 PF08666 SAF domain E4185_20210 PF03102 NeuB family E4185_20215 PF02350 UDP-N-acetylglucosamine 2-epimerase E4185_20225 PF08241 Methyltransferase domain E4185_20230 PF02348 Cytidylyltransferase E4185_20235 PF00483 Nucleotidyl transferase E4185_20250 PF02561 Flagellar protein FliS E4185_20255 PF02465 Flagellar hook-associated protein 2 N-terminus E4185_20255 PF07195 Flagellar hook-associated protein 2 C-terminus E4185_20255 PF07196 Flagellin hook IN motif E4185_20265 PF00700 Bacterial flagellin C-terminal helical region E4185_20265 PF07196 Flagellin hook IN motif E4185_20265 PF00669 Bacterial flagellin N-terminal helical region E4185_20270 PF00669 Bacterial flagellin N-terminal helical region E4185_20270 PF00700 Bacterial flagellin C-terminal helical region E4185_20270 PF07196 Flagellin hook IN motif E4185_20275 PF03458 UPF0126 domain E4185_20285 PF02568 Thiamine biosynthesis protein (ThiI) E4185_20285 PF02926 THUMP domain E4185_20295 PF06832 Penicillin-Binding Protein C-terminus Family E4185_20295 PF00912 Transglycosylase E4185_20295 PF00905 Penicillin binding protein transpeptidase domain E4185_20300 PF07678 A-macroglobulin TED domain E4185_20300 PF01835 MG2 domain E4185_20300 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E4185_20300 PF17962 Bacterial macroglobulin domain 6 E4185_20300 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E4185_20300 PF00207 Alpha-2-macroglobulin family E4185_20300 PF07703 Alpha-2-macroglobulin bait region domain E4185_20300 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E4185_20300 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E4185_20310 PF13808 DDE_Tnp_1-associated E4185_20310 PF01609 Transposase DDE domain E4185_20315 PF13808 DDE_Tnp_1-associated E4185_20315 PF01609 Transposase DDE domain E4185_20325 PF02321 Outer membrane efflux protein E4185_20330 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4185_20330 PF00529 HlyD membrane-fusion protein of T1SS E4185_20345 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_20345 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_20350 PF00563 EAL domain E4185_20350 PF00990 Diguanylate cyclase, GGDEF domain E4185_20350 PF03707 Bacterial signalling protein N terminal repeat E4185_20355 PF04055 Radical SAM superfamily E4185_20375 PF13808 DDE_Tnp_1-associated E4185_20375 PF01609 Transposase DDE domain E4185_20400 PF17102 Stealth protein CR3, conserved region 3 E4185_20400 PF11380 Stealth protein CR2, conserved region 2 E4185_20400 PF17101 Stealth protein CR1, conserved region 1 E4185_20400 PF17103 Stealth protein CR4, conserved region 4 E4185_20405 PF00534 Glycosyl transferases group 1 E4185_20405 PF00535 Glycosyl transferase family 2 E4185_20410 PF05159 Capsule polysaccharide biosynthesis protein E4185_20415 PF05159 Capsule polysaccharide biosynthesis protein E4185_20420 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20425 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20430 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_20435 PF00005 ABC transporter E4185_20440 PF03956 Lysine exporter LysO E4185_20465 PF01979 Amidohydrolase family E4185_20470 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_20475 PF04336 Acyl carrier protein phosphodiesterase E4185_20480 PF01979 Amidohydrolase family E4185_20490 PF03960 ArsC family E4185_20495 PF00578 AhpC/TSA family E4185_20500 PF13181 Tetratricopeptide repeat E4185_20500 PF01435 Peptidase family M48 E4185_20510 PF01594 AI-2E family transporter E4185_20520 PF00561 alpha/beta hydrolase fold E4185_20525 PF03976 Polyphosphate kinase 2 (PPK2) E4185_20530 PF00005 ABC transporter E4185_20530 PF08402 TOBE domain E4185_20535 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20540 PF14785 Maltose transport system permease protein MalF P2 domain E4185_20540 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20545 PF01547 Bacterial extracellular solute-binding protein E4185_20550 PF04245 37-kD nucleoid-associated bacterial protein E4185_20555 PF07208 Protein of unknown function (DUF1414) E4185_20560 PF11893 Domain of unknown function (DUF3413) E4185_20560 PF00884 Sulfatase E4185_20565 PF00593 TonB dependent receptor E4185_20565 PF07715 TonB-dependent Receptor Plug Domain E4185_20570 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4185_20570 PF00326 Prolyl oligopeptidase family E4185_20590 PF03974 Ecotin E4185_20595 PF04219 Protein of unknown function, DUF E4185_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_20600 PF03466 LysR substrate binding domain E4185_20605 PF01817 Chorismate mutase type II E4185_20605 PF02153 Prephenate dehydrogenase E4185_20610 PF00793 DAHP synthetase I family E4185_20615 PF03009 Glycerophosphoryl diester phosphodiesterase family E4185_20620 PF01266 FAD dependent oxidoreductase E4185_20620 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E4185_20625 PF00455 DeoR C terminal sensor domain E4185_20625 PF08220 DeoR-like helix-turn-helix domain E4185_20630 PF07690 Major Facilitator Superfamily E4185_20635 PF00230 Major intrinsic protein E4185_20640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4185_20640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4185_20645 PF03466 LysR substrate binding domain E4185_20645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_20665 PF00248 Aldo/keto reductase family E4185_20670 PF07690 Major Facilitator Superfamily E4185_20680 PF02322 Cytochrome bd terminal oxidase subunit II E4185_20685 PF01654 Cytochrome bd terminal oxidase subunit I E4185_20690 PF00392 Bacterial regulatory proteins, gntR family E4185_20690 PF00155 Aminotransferase class I and II E4185_20705 PF08281 Sigma-70, region 4 E4185_20705 PF04542 Sigma-70 region 2 E4185_20720 PF04391 Protein of unknown function (DUF533) E4185_20725 PF00892 EamA-like transporter family E4185_20740 PF10689 Protein of unknown function (DUF2496) E4185_20750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_20750 PF03466 LysR substrate binding domain E4185_20760 PF07690 Major Facilitator Superfamily E4185_20765 PF00849 RNA pseudouridylate synthase E4185_20765 PF01479 S4 domain E4185_20770 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4185_20770 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4185_20800 PF01609 Transposase DDE domain E4185_20800 PF13006 Insertion element 4 transposase N-terminal E4185_20805 PF00300 Histidine phosphatase superfamily (branch 1) E4185_20810 PF00563 EAL domain E4185_20810 PF00990 Diguanylate cyclase, GGDEF domain E4185_20810 PF03707 Bacterial signalling protein N terminal repeat E4185_20825 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4185_20825 PF17944 Arginine decarboxylase C-terminal helical extension E4185_20825 PF17810 Arginine decarboxylase helical bundle domain E4185_20845 PF12323 Helix-turn-helix domain E4185_20845 PF01385 Probable transposase E4185_20845 PF07282 Putative transposase DNA-binding domain E4185_20865 PF05221 S-adenosyl-L-homocysteine hydrolase E4185_20865 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E4185_20875 PF04264 YceI-like domain E4185_20880 PF03466 LysR substrate binding domain E4185_20880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_20890 PF01268 Formate--tetrahydrofolate ligase E4185_20895 PF00672 HAMP domain E4185_20895 PF17200 Single Cache domain 2 E4185_20895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_20900 PF01227 GTP cyclohydrolase I E4185_20905 PF03453 MoeA N-terminal region (domain I and II) E4185_20905 PF03454 MoeA C-terminal region (domain IV) E4185_20905 PF00994 Probable molybdopterin binding domain E4185_20910 PF00899 ThiF family E4185_20915 PF00561 alpha/beta hydrolase fold E4185_20920 PF03459 TOBE domain E4185_20920 PF00005 ABC transporter E4185_20925 PF00528 Binding-protein-dependent transport system inner membrane component E4185_20935 PF02391 MoaE protein E4185_20940 PF02597 ThiS family E4185_20945 PF01967 MoaC family E4185_20950 PF00994 Probable molybdopterin binding domain E4185_20955 PF03264 NapC/NirT cytochrome c family, N-terminal region E4185_20960 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) E4185_20965 PF13237 4Fe-4S dicluster domain E4185_20965 PF12801 4Fe-4S binding domain E4185_20970 PF12838 4Fe-4S dicluster domain E4185_20970 PF12800 4Fe-4S binding domain E4185_20975 PF10518 TAT (twin-arginine translocation) pathway signal sequence E4185_20975 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4185_20975 PF01568 Molydopterin dinucleotide binding domain E4185_20975 PF00384 Molybdopterin oxidoreductase E4185_20980 PF03927 NapD protein E4185_20985 PF12838 4Fe-4S dicluster domain E4185_20985 PF13187 4Fe-4S dicluster domain E4185_20990 PF06463 Molybdenum Cofactor Synthesis C E4185_20990 PF04055 Radical SAM superfamily E4185_20995 PF07730 Histidine kinase E4185_20995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_20995 PF00672 HAMP domain E4185_20995 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E4185_21000 PF00196 Bacterial regulatory proteins, luxR family E4185_21000 PF00072 Response regulator receiver domain E4185_21015 PF01627 Hpt domain E4185_21015 PF00672 HAMP domain E4185_21015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_21015 PF00512 His Kinase A (phospho-acceptor) domain E4185_21015 PF17149 Periplasmic sensor domain found in signal transduction proteins E4185_21015 PF00072 Response regulator receiver domain E4185_21025 PF01933 Uncharacterised protein family UPF0052 E4185_21035 PF13230 Glutamine amidotransferases class-II E4185_21040 PF13580 SIS domain E4185_21045 PF09317 Domain of unknown function (DUF1974) E4185_21045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4185_21045 PF02770 Acyl-CoA dehydrogenase, middle domain E4185_21045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4185_21055 PF13808 DDE_Tnp_1-associated E4185_21055 PF01609 Transposase DDE domain E4185_21065 PF01609 Transposase DDE domain E4185_21065 PF13006 Insertion element 4 transposase N-terminal E4185_21075 PF00929 Exonuclease E4185_21080 PF00075 RNase H E4185_21085 PF08241 Methyltransferase domain E4185_21090 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4185_21090 PF00753 Metallo-beta-lactamase superfamily E4185_21095 PF01476 LysM domain E4185_21095 PF01464 Transglycosylase SLT domain E4185_21100 PF03372 Endonuclease/Exonuclease/phosphatase family E4185_21110 PF03061 Thioesterase superfamily E4185_21120 PF00356 Bacterial regulatory proteins, lacI family E4185_21125 PF01464 Transglycosylase SLT domain E4185_21125 PF14718 Soluble lytic murein transglycosylase L domain E4185_21130 PF00563 EAL domain E4185_21130 PF00990 Diguanylate cyclase, GGDEF domain E4185_21130 PF03707 Bacterial signalling protein N terminal repeat E4185_21135 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4185_21155 PF04357 TamB, inner membrane protein subunit of TAM complex E4185_21180 PF02627 Carboxymuconolactone decarboxylase family E4185_21185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4185_21185 PF00403 Heavy-metal-associated domain E4185_21185 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_21190 PF13416 Bacterial extracellular solute-binding protein E4185_21205 PF01066 CDP-alcohol phosphatidyltransferase E4185_21210 PF13406 Transglycosylase SLT domain E4185_21215 PF01047 MarR family E4185_21225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4185_21225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4185_21225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4185_21225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4185_21230 PF03925 SeqA protein C-terminal domain E4185_21230 PF17206 SeqA protein N-terminal domain E4185_21235 PF00561 alpha/beta hydrolase fold E4185_21245 PF01402 Ribbon-helix-helix protein, copG family E4185_21250 PF00258 Flavodoxin E4185_21260 PF01475 Ferric uptake regulator family E4185_21265 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4185_21265 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E4185_21270 PF00728 Glycosyl hydrolase family 20, catalytic domain E4185_21270 PF02838 Glycosyl hydrolase family 20, domain 2 E4185_21270 PF03173 Putative carbohydrate binding domain E4185_21270 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain E4185_21275 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4185_21275 PF00367 phosphotransferase system, EIIB E4185_21275 PF02378 Phosphotransferase system, EIIC E4185_21280 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E4185_21285 PF01979 Amidohydrolase family E4185_21290 PF01047 MarR family E4185_21290 PF00480 ROK family E4185_21295 PF08019 Phosphoethanolamine transferase EptA/EptB E4185_21295 PF00884 Sulfatase E4185_21300 PF01709 Transcriptional regulator E4185_21305 PF01336 OB-fold nucleic acid binding domain E4185_21305 PF00152 tRNA synthetases class II (D, K and N) E4185_21305 PF02938 GAD domain E4185_21315 PF01904 Protein of unknown function DUF72 E4185_21320 PF13649 Methyltransferase domain E4185_21325 PF08003 Protein of unknown function (DUF1698) E4185_21345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_21345 PF03466 LysR substrate binding domain E4185_21350 PF00877 NlpC/P60 family E4185_21360 PF00171 Aldehyde dehydrogenase family E4185_21365 PF00440 Bacterial regulatory proteins, tetR family E4185_21365 PF17932 Tetracyclin repressor-like, C-terminal domain E4185_21375 PF00465 Iron-containing alcohol dehydrogenase E4185_21380 PF00291 Pyridoxal-phosphate dependent enzyme E4185_21400 PF01554 MatE E4185_21410 PF04325 Protein of unknown function (DUF465) E4185_21420 PF01804 Penicillin amidase E4185_21425 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4185_21425 PF10371 Domain of unknown function E4185_21425 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4185_21425 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4185_21425 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4185_21430 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4185_21430 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E4185_21430 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4185_21435 PF03473 MOSC domain E4185_21435 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_21435 PF03476 MOSC N-terminal beta barrel domain E4185_21435 PF03476 MOSC N-terminal beta barrel domain E4185_21435 PF00111 2Fe-2S iron-sulfur cluster binding domain E4185_21435 PF03473 MOSC domain E4185_21440 PF01435 Peptidase family M48 E4185_21450 PF12697 Alpha/beta hydrolase family E4185_21450 PF08241 Methyltransferase domain E4185_21455 PF00155 Aminotransferase class I and II E4185_21460 PF04055 Radical SAM superfamily E4185_21460 PF06968 Biotin and Thiamin Synthesis associated domain E4185_21465 PF00202 Aminotransferase class-III E4185_21480 PF01336 OB-fold nucleic acid binding domain E4185_21480 PF00152 tRNA synthetases class II (D, K and N) E4185_21485 PF03605 Anaerobic c4-dicarboxylate membrane transporter E4185_21505 PF03960 ArsC family E4185_21510 PF01546 Peptidase family M20/M25/M40 E4185_21510 PF07687 Peptidase dimerisation domain E4185_21515 PF02557 D-alanyl-D-alanine carboxypeptidase E4185_21525 PF03471 Transporter associated domain E4185_21525 PF00999 Sodium/hydrogen exchanger family E4185_21525 PF02080 TrkA-C domain E4185_21535 PF02080 TrkA-C domain E4185_21535 PF00999 Sodium/hydrogen exchanger family E4185_21535 PF03471 Transporter associated domain E4185_21540 PF01810 LysE type translocator E4185_21545 PF12729 Four helix bundle sensory module for signal transduction E4185_21545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4185_21545 PF00672 HAMP domain E4185_21550 PF07509 Protein of unknown function (DUF1523) E4185_21565 PF01156 Inosine-uridine preferring nucleoside hydrolase E4185_21570 PF00849 RNA pseudouridylate synthase E4185_21575 PF01048 Phosphorylase superfamily E4185_21580 PF04355 SmpA / OmlA family E4185_21585 PF13460 NAD(P)H-binding E4185_21595 PF03364 Polyketide cyclase / dehydrase and lipid transport E4185_21600 PF01668 SmpB protein E4185_21610 PF13006 Insertion element 4 transposase N-terminal E4185_21610 PF01609 Transposase DDE domain E4185_21790 PF05772 NinB protein E4185_21815 PF00145 C-5 cytosine-specific DNA methylase E4185_21830 PF03374 Phage antirepressor protein KilAC domain E4185_21830 PF09669 Phage regulatory protein Rha (Phage_pRha) E4185_21865 PF12684 PDDEXK-like domain of unknown function (DUF3799) E4185_21865 PF06630 Enterobacterial exodeoxyribonuclease VIII E4185_21890 PF04381 Putative exonuclease, RdgC E4185_21955 PF02796 Helix-turn-helix domain of resolvase E4185_21955 PF00239 Resolvase, N terminal domain E4185_21960 PF15933 Antitoxin to bacterial toxin RNase LS or RnlA E4185_21965 PF15935 RNase LS, bacterial toxin E4185_21970 PF00872 Transposase, Mutator family E4185_21975 PF13356 Arm DNA-binding domain E4185_21975 PF00589 Phage integrase family E4185_21990 PF00145 C-5 cytosine-specific DNA methylase E4185_22010 PF13508 Acetyltransferase (GNAT) domain E4185_22030 PF01546 Peptidase family M20/M25/M40 E4185_22045 PF03737 Aldolase/RraA E4185_22055 PF00072 Response regulator receiver domain E4185_22055 PF00486 Transcriptional regulatory protein, C terminal E4185_22070 PF00664 ABC transporter transmembrane region E4185_22070 PF00005 ABC transporter E4185_22075 PF00664 ABC transporter transmembrane region E4185_22075 PF00005 ABC transporter E4185_22095 PF18389 TrmO C-terminal domain E4185_22095 PF01980 tRNA-methyltransferase O E4185_22100 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4185_22100 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4185_22110 PF00004 ATPase family associated with various cellular activities (AAA) E4185_22110 PF01434 Peptidase family M41 E4185_22110 PF17862 AAA+ lid domain E4185_22115 PF00291 Pyridoxal-phosphate dependent enzyme E4185_22120 PF00381 PTS HPr component phosphorylation site E4185_22125 PF00391 PEP-utilising enzyme, mobile domain E4185_22125 PF02896 PEP-utilising enzyme, TIM barrel domain E4185_22125 PF05524 PEP-utilising enzyme, N-terminal E4185_22130 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4185_22135 PF01292 Prokaryotic cytochrome b561 E4185_22145 PF00149 Calcineurin-like phosphoesterase E4185_22145 PF12320 Type 5 capsule protein repressor C-terminal domain E4185_22150 PF13673 Acetyltransferase (GNAT) domain E4185_22155 PF04381 Putative exonuclease, RdgC E4185_22160 PF13472 GDSL-like Lipase/Acylhydrolase family E4185_22175 PF01266 FAD dependent oxidoreductase E4185_22180 PF01381 Helix-turn-helix E4185_22180 PF07883 Cupin domain E4185_22185 PF00171 Aldehyde dehydrogenase family E4185_22195 PF00324 Amino acid permease E4185_22200 PF13520 Amino acid permease E4185_22210 PF02690 Na+/Pi-cotransporter E4185_22215 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4185_22215 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4185_22220 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E4185_22225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_22225 PF00512 His Kinase A (phospho-acceptor) domain E4185_22225 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4185_22225 PF00072 Response regulator receiver domain E4185_22225 PF00989 PAS fold E4185_22225 PF01627 Hpt domain E4185_22230 PF10725 Protein of unknown function (DUF2517) E4185_22250 PF09308 LuxQ, periplasmic E4185_22250 PF00512 His Kinase A (phospho-acceptor) domain E4185_22250 PF00072 Response regulator receiver domain E4185_22250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4185_22260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4185_22260 PF03466 LysR substrate binding domain E4185_22265 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E4185_22275 PF07690 Major Facilitator Superfamily E4185_22295 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E4185_22300 PF02416 mttA/Hcf106 family