locus-tag class description E4188_00015 PF13439 Glycosyltransferase Family 4 E4188_00015 PF00534 Glycosyl transferases group 1 E4188_00020 PF00534 Glycosyl transferases group 1 E4188_00020 PF13439 Glycosyltransferase Family 4 E4188_00025 PF00535 Glycosyl transferase family 2 E4188_00025 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 E4188_00040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4188_00045 PF05523 WxcM-like, C-terminal E4188_00050 PF00483 Nucleotidyl transferase E4188_00055 PF16363 GDP-mannose 4,6 dehydratase E4188_00060 PF00953 Glycosyl transferase family 4 E4188_00065 PF02719 Polysaccharide biosynthesis protein E4188_00070 PF00953 Glycosyl transferase family 4 E4188_00075 PF01370 NAD dependent epimerase/dehydratase family E4188_00085 PF00005 ABC transporter E4188_00090 PF01061 ABC-2 type transporter E4188_00105 PF01370 NAD dependent epimerase/dehydratase family E4188_00115 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E4188_00120 PF00483 Nucleotidyl transferase E4188_00125 PF04321 RmlD substrate binding domain E4188_00130 PF16363 GDP-mannose 4,6 dehydratase E4188_00140 PF00072 Response regulator receiver domain E4188_00140 PF00486 Transcriptional regulatory protein, C terminal E4188_00145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_00145 PF08918 PhoQ Sensor E4188_00150 PF02685 Glucokinase E4188_00155 PF01418 Helix-turn-helix domain, rpiR family E4188_00155 PF01380 SIS domain E4188_00160 PF02887 Pyruvate kinase, alpha/beta domain E4188_00160 PF00224 Pyruvate kinase, barrel domain E4188_00170 PF00873 AcrB/AcrD/AcrF family E4188_00175 PF02770 Acyl-CoA dehydrogenase, middle domain E4188_00175 PF09317 Domain of unknown function (DUF1974) E4188_00175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4188_00175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4188_00180 PF00440 Bacterial regulatory proteins, tetR family E4188_00215 PF13808 DDE_Tnp_1-associated E4188_00215 PF01609 Transposase DDE domain E4188_00225 PF05598 Transposase domain (DUF772) E4188_00225 PF01609 Transposase DDE domain E4188_00245 PF12323 Helix-turn-helix domain E4188_00250 PF05973 Phage derived protein Gp49-like (DUF891) E4188_00270 PF01695 IstB-like ATP binding protein E4188_00275 PF00665 Integrase core domain E4188_00285 PF12323 Helix-turn-helix domain E4188_00290 PF01609 Transposase DDE domain E4188_00290 PF05598 Transposase domain (DUF772) E4188_00305 PF02321 Outer membrane efflux protein E4188_00310 PF00873 AcrB/AcrD/AcrF family E4188_00315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_00315 PF00529 HlyD membrane-fusion protein of T1SS E4188_00320 PF00440 Bacterial regulatory proteins, tetR family E4188_00320 PF08361 MAATS-type transcriptional repressor, C-terminal region E4188_00340 PF01479 S4 domain E4188_00340 PF00849 RNA pseudouridylate synthase E4188_00345 PF04079 Segregation and condensation complex subunit ScpB E4188_00350 PF02616 Segregation and condensation protein ScpA E4188_00355 PF01300 Telomere recombination E4188_00360 PF02811 PHP domain E4188_00370 PF00425 chorismate binding enzyme E4188_00370 PF04715 Anthranilate synthase component I, N terminal region E4188_00375 PF00117 Glutamine amidotransferase class-I E4188_00375 PF00591 Glycosyl transferase family, a/b domain E4188_00375 PF02885 Glycosyl transferase family, helical bundle domain E4188_00380 PF02885 Glycosyl transferase family, helical bundle domain E4188_00380 PF00591 Glycosyl transferase family, a/b domain E4188_00385 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E4188_00385 PF00218 Indole-3-glycerol phosphate synthase E4188_00390 PF00291 Pyridoxal-phosphate dependent enzyme E4188_00395 PF00290 Tryptophan synthase alpha chain E4188_00400 PF00700 Bacterial flagellin C-terminal helical region E4188_00400 PF00669 Bacterial flagellin N-terminal helical region E4188_00400 PF07196 Flagellin hook IN motif E4188_00405 PF01609 Transposase DDE domain E4188_00405 PF13808 DDE_Tnp_1-associated E4188_00410 PF00700 Bacterial flagellin C-terminal helical region E4188_00410 PF07196 Flagellin hook IN motif E4188_00410 PF00669 Bacterial flagellin N-terminal helical region E4188_00420 PF07804 HipA-like C-terminal domain E4188_00420 PF13657 HipA N-terminal domain E4188_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_00440 PF03466 LysR substrate binding domain E4188_00450 PF01609 Transposase DDE domain E4188_00450 PF13006 Insertion element 4 transposase N-terminal E4188_00455 PF07237 Protein of unknown function (DUF1428) E4188_00460 PF07690 Major Facilitator Superfamily E4188_00470 PF01040 UbiA prenyltransferase family E4188_00475 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E4188_00480 PF00510 Cytochrome c oxidase subunit III E4188_00485 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4188_00490 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4188_00490 PF06481 COX Aromatic Rich Motif E4188_00495 PF02627 Carboxymuconolactone decarboxylase family E4188_00500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_00500 PF03466 LysR substrate binding domain E4188_00510 PF01156 Inosine-uridine preferring nucleoside hydrolase E4188_00525 PF00127 Copper binding proteins, plastocyanin/azurin family E4188_00530 PF02424 ApbE family E4188_00535 PF01609 Transposase DDE domain E4188_00535 PF13006 Insertion element 4 transposase N-terminal E4188_00540 PF00011 Hsp20/alpha crystallin family E4188_00550 PF12323 Helix-turn-helix domain E4188_00565 PF03372 Endonuclease/Exonuclease/phosphatase family E4188_00575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_00575 PF00529 HlyD membrane-fusion protein of T1SS E4188_00580 PF00873 AcrB/AcrD/AcrF family E4188_00595 PF03099 Biotin/lipoate A/B protein ligase family E4188_00595 PF10437 Bacterial lipoate protein ligase C-terminus E4188_00600 PF03707 Bacterial signalling protein N terminal repeat E4188_00600 PF00990 Diguanylate cyclase, GGDEF domain E4188_00600 PF00563 EAL domain E4188_00605 PF00873 AcrB/AcrD/AcrF family E4188_00620 PF04143 Sulphur transport E4188_00640 PF02308 MgtC family E4188_00645 PF00356 Bacterial regulatory proteins, lacI family E4188_00645 PF13407 Periplasmic binding protein domain E4188_00650 PF08244 Glycosyl hydrolases family 32 C terminal E4188_00650 PF00251 Glycosyl hydrolases family 32 N-terminal domain E4188_00655 PF00367 phosphotransferase system, EIIB E4188_00655 PF02378 Phosphotransferase system, EIIC E4188_00660 PF00294 pfkB family carbohydrate kinase E4188_00665 PF02264 LamB porin E4188_00665 PF11471 Maltoporin periplasmic N-terminal extension E4188_00670 PF00226 DnaJ domain E4188_00670 PF00684 DnaJ central domain E4188_00670 PF01556 DnaJ C terminal domain E4188_00675 PF00012 Hsp70 protein E4188_00680 PF01025 GrpE E4188_00685 PF01513 ATP-NAD kinase E4188_00695 PF02463 RecF/RecN/SMC N terminal domain E4188_00700 PF02833 DHHA2 domain E4188_00700 PF01368 DHH family E4188_00710 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_00715 PF12704 MacB-like periplasmic core domain E4188_00715 PF02687 FtsX-like permease family E4188_00715 PF00005 ABC transporter E4188_00720 PF02321 Outer membrane efflux protein E4188_00725 PF08021 Siderophore-interacting FAD-binding domain E4188_00725 PF04954 Siderophore-interacting protein E4188_00730 PF00793 DAHP synthetase I family E4188_00735 PF00816 H-NS histone family E4188_00740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_00740 PF03466 LysR substrate binding domain E4188_00745 PF02447 GntP family permease E4188_00750 PF00291 Pyridoxal-phosphate dependent enzyme E4188_00760 PF00180 Isocitrate/isopropylmalate dehydrogenase E4188_00765 PF12833 Helix-turn-helix domain E4188_00770 PF01238 Phosphomannose isomerase type I E4188_00775 PF10688 Bacterial inner membrane protein E4188_00790 PF02368 Bacterial Ig-like domain (group 2) E4188_00790 PF11999 Protein of unknown function (DUF3494) E4188_00800 PF13358 DDE superfamily endonuclease E4188_00800 PF13592 Winged helix-turn helix E4188_00810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_00810 PF03466 LysR substrate binding domain E4188_00815 PF00665 Integrase core domain E4188_00820 PF01695 IstB-like ATP binding protein E4188_00855 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_00855 PF02378 Phosphotransferase system, EIIC E4188_00855 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4188_00860 PF07690 Major Facilitator Superfamily E4188_00865 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_00875 PF00849 RNA pseudouridylate synthase E4188_00880 PF00293 NUDIX domain E4188_00890 PF04356 Protein of unknown function (DUF489) E4188_00895 PF08328 Adenylosuccinate lyase C-terminal E4188_00895 PF00206 Lyase E4188_00900 PF08007 Cupin superfamily protein E4188_00905 PF02887 Pyruvate kinase, alpha/beta domain E4188_00905 PF00224 Pyruvate kinase, barrel domain E4188_00910 PF00924 Mechanosensitive ion channel E4188_00910 PF12795 Mechanosensitive ion channel porin domain E4188_00910 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4188_00915 PF01810 LysE type translocator E4188_00920 PF10282 Lactonase, 7-bladed beta-propeller E4188_00935 PF00860 Permease family E4188_00940 PF00390 Malic enzyme, N-terminal domain E4188_00940 PF03949 Malic enzyme, NAD binding domain E4188_00945 PF12804 MobA-like NTP transferase domain E4188_00950 PF03205 Molybdopterin guanine dinucleotide synthesis protein B E4188_00965 PF13426 PAS domain E4188_00965 PF08447 PAS fold E4188_00965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_00985 PF05114 Protein of unknown function (DUF692) E4188_01015 PF13474 SnoaL-like domain E4188_01020 PF14821 Threonine synthase N terminus E4188_01020 PF00291 Pyridoxal-phosphate dependent enzyme E4188_01025 PF00288 GHMP kinases N terminal domain E4188_01025 PF08544 GHMP kinases C terminal E4188_01030 PF01842 ACT domain E4188_01030 PF00696 Amino acid kinase family E4188_01030 PF13840 ACT domain E4188_01030 PF00742 Homoserine dehydrogenase E4188_01030 PF03447 Homoserine dehydrogenase, NAD binding domain E4188_01040 PF00588 SpoU rRNA Methylase family E4188_01045 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) E4188_01050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01050 PF03466 LysR substrate binding domain E4188_01055 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E4188_01055 PF01243 Pyridoxamine 5'-phosphate oxidase E4188_01080 PF01189 16S rRNA methyltransferase RsmB/F E4188_01080 PF01029 NusB family E4188_01085 PF00462 Glutaredoxin E4188_01090 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4188_01090 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4188_01095 PF04333 MlaA lipoprotein E4188_01105 PF03918 Cytochrome C biogenesis protein E4188_01110 PF08534 Redoxin E4188_01115 PF01578 Cytochrome C assembly protein E4188_01115 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E4188_01120 PF03100 CcmE E4188_01125 PF04995 Heme exporter protein D (CcmD) E4188_01130 PF01578 Cytochrome C assembly protein E4188_01135 PF03379 CcmB protein E4188_01140 PF00005 ABC transporter E4188_01150 PF01584 CheW-like domain E4188_01155 PF02384 N-6 DNA Methylase E4188_01180 PF13614 AAA domain E4188_01185 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4188_01185 PF00691 OmpA family E4188_01190 PF01618 MotA/TolQ/ExbB proton channel family E4188_01195 PF01339 CheB methylesterase E4188_01195 PF00072 Response regulator receiver domain E4188_01200 PF00072 Response regulator receiver domain E4188_01200 PF01584 CheW-like domain E4188_01200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_01200 PF01627 Hpt domain E4188_01200 PF02895 Signal transducing histidine kinase, homodimeric domain E4188_01205 PF04344 Chemotaxis phosphatase, CheZ E4188_01210 PF00072 Response regulator receiver domain E4188_01215 PF04539 Sigma-70 region 3 E4188_01215 PF04545 Sigma-70, region 4 E4188_01215 PF04542 Sigma-70 region 2 E4188_01220 PF10609 NUBPL iron-transfer P-loop NTPase E4188_01225 PF00448 SRP54-type protein, GTPase domain E4188_01230 PF00771 FHIPEP family E4188_01235 PF01312 FlhB HrpN YscU SpaS Family E4188_01245 PF01311 Bacterial export proteins, family 1 E4188_01250 PF01313 Bacterial export proteins, family 3 E4188_01255 PF00813 FliP family E4188_01260 PF00813 FliP family E4188_01265 PF04347 Flagellar biosynthesis protein, FliO E4188_01270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4188_01275 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E4188_01275 PF02154 Flagellar motor switch protein FliM E4188_01295 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4188_01295 PF18269 T3SS EscN ATPase C-terminal domain E4188_01305 PF14842 FliG N-terminal domain E4188_01305 PF14841 FliG middle domain E4188_01305 PF01706 FliG C-terminal domain E4188_01310 PF01514 Secretory protein of YscJ/FliF family E4188_01310 PF08345 Flagellar M-ring protein C-terminal E4188_01315 PF02049 Flagellar hook-basal body complex protein FliE E4188_01325 PF18693 TRAM domain E4188_01325 PF00919 Uncharacterized protein family UPF0004 E4188_01325 PF04055 Radical SAM superfamily E4188_01330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_01335 PF00528 Binding-protein-dependent transport system inner membrane component E4188_01340 PF00528 Binding-protein-dependent transport system inner membrane component E4188_01340 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_01345 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_01345 PF00005 ABC transporter E4188_01350 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_01350 PF00005 ABC transporter E4188_01360 PF01869 BadF/BadG/BcrA/BcrD ATPase family E4188_01365 PF00728 Glycosyl hydrolase family 20, catalytic domain E4188_01365 PF02838 Glycosyl hydrolase family 20, domain 2 E4188_01370 PF08447 PAS fold E4188_01370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_01380 PF08272 Topoisomerase I zinc-ribbon-like E4188_01380 PF01396 Topoisomerase DNA binding C4 zinc finger E4188_01380 PF01131 DNA topoisomerase E4188_01380 PF01751 Toprim domain E4188_01385 PF04996 Succinylarginine dihydrolase E4188_01390 PF08496 Peptidase family S49 N-terminal E4188_01390 PF01343 Peptidase family S49 E4188_01395 PF00106 short chain dehydrogenase E4188_01400 PF03466 LysR substrate binding domain E4188_01400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01405 PF07690 Major Facilitator Superfamily E4188_01410 PF00155 Aminotransferase class I and II E4188_01420 PF03466 LysR substrate binding domain E4188_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01430 PF01161 Phosphatidylethanolamine-binding protein E4188_01440 PF01204 Trehalase E4188_01445 PF00579 tRNA synthetases class I (W and Y) E4188_01450 PF08525 Opacity-associated protein A N-terminal motif E4188_01450 PF01476 LysM domain E4188_01450 PF01551 Peptidase family M23 E4188_01455 PF03702 Anhydro-N-acetylmuramic acid kinase E4188_01465 PF13808 DDE_Tnp_1-associated E4188_01465 PF01609 Transposase DDE domain E4188_01500 PF02780 Transketolase, C-terminal domain E4188_01500 PF00456 Transketolase, thiamine diphosphate binding domain E4188_01500 PF02779 Transketolase, pyrimidine binding domain E4188_01505 PF02773 S-adenosylmethionine synthetase, C-terminal domain E4188_01505 PF00438 S-adenosylmethionine synthetase, N-terminal domain E4188_01505 PF02772 S-adenosylmethionine synthetase, central domain E4188_01510 PF10263 SprT-like family E4188_01515 PF04231 Endonuclease I E4188_01520 PF04452 RNA methyltransferase E4188_01525 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E4188_01525 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E4188_01530 PF02622 Uncharacterized ACR, COG1678 E4188_01545 PF03652 Holliday junction resolvase E4188_01550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01550 PF03466 LysR substrate binding domain E4188_01555 PF07690 Major Facilitator Superfamily E4188_01565 PF13006 Insertion element 4 transposase N-terminal E4188_01565 PF01609 Transposase DDE domain E4188_01575 PF01235 Sodium:alanine symporter family E4188_01580 PF00923 Transaldolase/Fructose-6-phosphate aldolase E4188_01595 PF03167 Uracil DNA glycosylase superfamily E4188_01600 PF01228 Glycine radical E4188_01610 PF02371 Transposase IS116/IS110/IS902 family E4188_01610 PF01548 Transposase E4188_01615 PF01609 Transposase DDE domain E4188_01625 PF00793 DAHP synthetase I family E4188_01630 PF13369 Transglutaminase-like superfamily E4188_01640 PF13847 Methyltransferase domain E4188_01640 PF17827 PrmC N-terminal domain E4188_01645 PF00472 RF-1 domain E4188_01645 PF03462 PCRF domain E4188_01650 PF01488 Shikimate / quinate 5-dehydrogenase E4188_01650 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E4188_01650 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E4188_01655 PF03550 Outer membrane lipoprotein LolB E4188_01660 PF00288 GHMP kinases N terminal domain E4188_01660 PF08544 GHMP kinases C terminal E4188_01670 PF14572 Phosphoribosyl synthetase-associated domain E4188_01670 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E4188_01675 PF00149 Calcineurin-like phosphoesterase E4188_01675 PF02872 5'-nucleotidase, C-terminal domain E4188_01680 PF01195 Peptidyl-tRNA hydrolase E4188_01685 PF06071 Protein of unknown function (DUF933) E4188_01685 PF01926 50S ribosome-binding GTPase E4188_01730 PF03600 Citrate transporter E4188_01730 PF02080 TrkA-C domain E4188_01740 PF07859 alpha/beta hydrolase fold E4188_01750 PF07690 Major Facilitator Superfamily E4188_01755 PF13419 Haloacid dehalogenase-like hydrolase E4188_01765 PF00171 Aldehyde dehydrogenase family E4188_01770 PF04958 Arginine N-succinyltransferase beta subunit E4188_01775 PF00202 Aminotransferase class-III E4188_01780 PF00117 Glutamine amidotransferase class-I E4188_01790 PF00579 tRNA synthetases class I (W and Y) E4188_01795 PF13419 Haloacid dehalogenase-like hydrolase E4188_01800 PF00834 Ribulose-phosphate 3 epimerase family E4188_01805 PF02086 D12 class N6 adenine-specific DNA methyltransferase E4188_01815 PF01761 3-dehydroquinate synthase E4188_01820 PF01202 Shikimate kinase E4188_01825 PF03958 Bacterial type II/III secretion system short domain E4188_01825 PF07660 Secretin and TonB N terminus short domain E4188_01825 PF00263 Bacterial type II and III secretion system protein E4188_01825 PF11741 AMIN domain E4188_01855 PF17092 Penicillin-binding protein OB-like domain E4188_01855 PF00912 Transglycosylase E4188_01855 PF00905 Penicillin binding protein transpeptidase domain E4188_01860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01860 PF03466 LysR substrate binding domain E4188_01875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_01875 PF03466 LysR substrate binding domain E4188_01890 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4188_01890 PF02753 Pili assembly chaperone PapD, C-terminal domain E4188_01900 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E4188_01900 PF02753 Pili assembly chaperone PapD, C-terminal domain E4188_01905 PF01551 Peptidase family M23 E4188_01905 PF01476 LysM domain E4188_01905 PF08525 Opacity-associated protein A N-terminal motif E4188_01915 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4188_01915 PF12795 Mechanosensitive ion channel porin domain E4188_01915 PF00924 Mechanosensitive ion channel E4188_01920 PF03009 Glycerophosphoryl diester phosphodiesterase family E4188_01925 PF00672 HAMP domain E4188_01925 PF02743 Cache domain E4188_01925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_01930 PF02910 Fumarate reductase flavoprotein C-term E4188_01930 PF00890 FAD binding domain E4188_01935 PF13183 4Fe-4S dicluster domain E4188_01935 PF13085 2Fe-2S iron-sulfur cluster binding domain E4188_01940 PF02300 Fumarate reductase subunit C E4188_01945 PF02313 Fumarate reductase subunit D E4188_01950 PF06224 Winged helix DNA-binding domain E4188_01955 PF13649 Methyltransferase domain E4188_01965 PF00501 AMP-binding enzyme E4188_01975 PF00106 short chain dehydrogenase E4188_01985 PF00486 Transcriptional regulatory protein, C terminal E4188_01985 PF00072 Response regulator receiver domain E4188_01990 PF08521 Two-component sensor kinase N-terminal E4188_01990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_01990 PF00512 His Kinase A (phospho-acceptor) domain E4188_02000 PF00478 IMP dehydrogenase / GMP reductase domain E4188_02010 PF08207 Elongation factor P (EF-P) KOW-like domain E4188_02010 PF09285 Elongation factor P, C-terminal E4188_02010 PF01132 Elongation factor P (EF-P) OB domain E4188_02015 PF09997 Predicted membrane protein (DUF2238) E4188_02025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4188_02025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4188_02035 PF00990 Diguanylate cyclase, GGDEF domain E4188_02035 PF17152 Periplasmic sensor domain E4188_02050 PF00990 Diguanylate cyclase, GGDEF domain E4188_02050 PF17151 Periplasmic sensor domain E4188_02055 PF13419 Haloacid dehalogenase-like hydrolase E4188_02065 PF03466 LysR substrate binding domain E4188_02065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_02070 PF00313 'Cold-shock' DNA-binding domain E4188_02075 PF01494 FAD binding domain E4188_02080 PF04055 Radical SAM superfamily E4188_02080 PF01938 TRAM domain E4188_02080 PF00919 Uncharacterized protein family UPF0004 E4188_02085 PF02562 PhoH-like protein E4188_02090 PF02130 Uncharacterized protein family UPF0054 E4188_02095 PF00571 CBS domain E4188_02095 PF03471 Transporter associated domain E4188_02100 PF00795 Carbon-nitrogen hydrolase E4188_02105 PF07295 Zinc-ribbon containing domain E4188_02110 PF08264 Anticodon-binding domain of tRNA E4188_02110 PF00133 tRNA synthetases class I (I, L, M and V) E4188_02110 PF13603 Leucyl-tRNA synthetase, Domain 2 E4188_02125 PF01467 Cytidylyltransferase-like E4188_02135 PF02590 Predicted SPOUT methyltransferase E4188_02140 PF03717 Penicillin-binding Protein dimerisation domain E4188_02140 PF00905 Penicillin binding protein transpeptidase domain E4188_02145 PF01098 Cell cycle protein E4188_02150 PF13406 Transglycosylase SLT domain E4188_02155 PF05036 Sporulation related domain E4188_02155 PF03330 Lytic transglycolase E4188_02160 PF00768 D-alanyl-D-alanine carboxypeptidase E4188_02160 PF07943 Penicillin-binding protein 5, C-terminal domain E4188_02165 PF04359 Protein of unknown function (DUF493) E4188_02170 PF03099 Biotin/lipoate A/B protein ligase family E4188_02180 PF04055 Radical SAM superfamily E4188_02180 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E4188_02190 PF02508 Rnf-Nqr subunit, membrane protein E4188_02200 PF17768 RecJ OB domain E4188_02200 PF01368 DHH family E4188_02200 PF02272 DHHA1 domain E4188_02205 PF00072 Response regulator receiver domain E4188_02205 PF02954 Bacterial regulatory protein, Fis family E4188_02205 PF00158 Sigma-54 interaction domain E4188_02215 PF01741 Large-conductance mechanosensitive channel, MscL E4188_02225 PF02899 Phage integrase, N-terminal SAM-like domain E4188_02225 PF00589 Phage integrase family E4188_02230 PF00258 Flavodoxin E4188_02240 PF01523 Putative modulator of DNA gyrase E4188_02245 PF01523 Putative modulator of DNA gyrase E4188_02255 PF17969 L,D-transpeptidase C-terminal domain E4188_02255 PF03734 L,D-transpeptidase catalytic domain E4188_02265 PF12838 4Fe-4S dicluster domain E4188_02275 PF13006 Insertion element 4 transposase N-terminal E4188_02275 PF01609 Transposase DDE domain E4188_02285 PF02635 DsrE/DsrF-like family E4188_02290 PF07690 Major Facilitator Superfamily E4188_02295 PF03725 3' exoribonuclease family, domain 2 E4188_02295 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E4188_02295 PF00575 S1 RNA binding domain E4188_02295 PF01138 3' exoribonuclease family, domain 1 E4188_02295 PF00013 KH domain E4188_02300 PF00312 Ribosomal protein S15 E4188_02305 PF16198 tRNA pseudouridylate synthase B C-terminal domain E4188_02305 PF01509 TruB family pseudouridylate synthase (N terminal domain) E4188_02305 PF09157 Pseudouridine synthase II TruB, C-terminal E4188_02310 PF02033 Ribosome-binding factor A E4188_02315 PF04760 Translation initiation factor IF-2, N-terminal region E4188_02315 PF00009 Elongation factor Tu GTP binding domain E4188_02315 PF11987 Translation-initiation factor 2 E4188_02315 PF08364 Bacterial translation initiation factor IF-2 associated region E4188_02320 PF00575 S1 RNA binding domain E4188_02320 PF08529 NusA N-terminal domain E4188_02320 PF13184 NusA-like KH domain E4188_02325 PF17384 RimP C-terminal SH3 domain E4188_02325 PF02576 RimP N-terminal domain E4188_02340 PF03840 Preprotein translocase SecG subunit E4188_02345 PF00121 Triosephosphate isomerase E4188_02350 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4188_02350 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4188_02350 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4188_02350 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4188_02355 PF00809 Pterin binding enzyme E4188_02360 PF00004 ATPase family associated with various cellular activities (AAA) E4188_02360 PF06480 FtsH Extracellular E4188_02360 PF01434 Peptidase family M41 E4188_02360 PF17862 AAA+ lid domain E4188_02365 PF01728 FtsJ-like methyltransferase E4188_02370 PF01985 CRS1 / YhbY (CRM) domain E4188_02380 PF03449 Transcription elongation factor, N-terminal E4188_02380 PF01272 Transcription elongation factor, GreA/GreB, C-term E4188_02385 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4188_02385 PF00691 OmpA family E4188_02390 PF01618 MotA/TolQ/ExbB proton channel family E4188_02395 PF02609 Exonuclease VII small subunit E4188_02400 PF00348 Polyprenyl synthetase E4188_02405 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E4188_02405 PF02779 Transketolase, pyrimidine binding domain E4188_02405 PF02780 Transketolase, C-terminal domain E4188_02420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_02425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_02425 PF00005 ABC transporter E4188_02430 PF04608 Phosphatidylglycerophosphatase A E4188_02435 PF00586 AIR synthase related protein, N-terminal domain E4188_02435 PF02769 AIR synthase related protein, C-terminal domain E4188_02440 PF01029 NusB family E4188_02445 PF00885 6,7-dimethyl-8-ribityllumazine synthase E4188_02450 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4188_02450 PF00925 GTP cyclohydrolase II E4188_02455 PF00677 Lumazine binding domain E4188_02460 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4188_02460 PF01872 RibD C-terminal domain E4188_02465 PF03477 ATP cone domain E4188_02480 PF00464 Serine hydroxymethyltransferase E4188_02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_02490 PF01627 Hpt domain E4188_02490 PF00672 HAMP domain E4188_02490 PF00072 Response regulator receiver domain E4188_02490 PF00512 His Kinase A (phospho-acceptor) domain E4188_02495 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4188_02505 PF00072 Response regulator receiver domain E4188_02505 PF00486 Transcriptional regulatory protein, C terminal E4188_02510 PF03264 NapC/NirT cytochrome c family, N-terminal region E4188_02515 PF01568 Molydopterin dinucleotide binding domain E4188_02515 PF00384 Molybdopterin oxidoreductase E4188_02515 PF18364 Molybdopterin oxidoreductase N-terminal domain E4188_02520 PF02613 Nitrate reductase delta subunit E4188_02540 PF00501 AMP-binding enzyme E4188_02540 PF16177 Acetyl-coenzyme A synthetase N-terminus E4188_02540 PF13193 AMP-binding enzyme C-terminal domain E4188_02545 PF01220 Dehydroquinase class II E4188_02550 PF00364 Biotin-requiring enzyme E4188_02555 PF00289 Biotin carboxylase, N-terminal domain E4188_02555 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4188_02555 PF02785 Biotin carboxylase C-terminal domain E4188_02560 PF06196 Protein of unknown function (DUF997) E4188_02565 PF00474 Sodium:solute symporter family E4188_02570 PF00367 phosphotransferase system, EIIB E4188_02570 PF02378 Phosphotransferase system, EIIC E4188_02570 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4188_02575 PF03466 LysR substrate binding domain E4188_02575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_02580 PF08240 Alcohol dehydrogenase GroES-like domain E4188_02580 PF00107 Zinc-binding dehydrogenase E4188_02590 PF12464 Maltose acetyltransferase E4188_02590 PF14602 Hexapeptide repeat of succinyl-transferase E4188_02595 PF00881 Nitroreductase family E4188_02600 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_02600 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4188_02605 PF01343 Peptidase family S49 E4188_02620 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4188_02620 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4188_02625 PF07023 Protein of unknown function (DUF1315) E4188_02630 PF00710 Asparaginase, N-terminal E4188_02630 PF17763 Glutaminase/Asparaginase C-terminal domain E4188_02635 PF03616 Sodium/glutamate symporter E4188_02645 PF13426 PAS domain E4188_02645 PF00563 EAL domain E4188_02645 PF00990 Diguanylate cyclase, GGDEF domain E4188_02650 PF02743 Cache domain E4188_02650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_02650 PF00672 HAMP domain E4188_02660 PF01336 OB-fold nucleic acid binding domain E4188_02660 PF00152 tRNA synthetases class II (D, K and N) E4188_02665 PF02567 Phenazine biosynthesis-like protein E4188_02670 PF00175 Oxidoreductase NAD-binding domain E4188_02670 PF00258 Flavodoxin E4188_02670 PF00667 FAD binding domain E4188_02675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4188_02675 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4188_02680 PF01507 Phosphoadenosine phosphosulfate reductase family E4188_02685 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E4188_02690 PF00528 Binding-protein-dependent transport system inner membrane component E4188_02695 PF00005 ABC transporter E4188_02695 PF00571 CBS domain E4188_02700 PF00186 Dihydrofolate reductase E4188_02705 PF12821 Threonine/Serine exporter, ThrE E4188_02710 PF06738 Putative threonine/serine exporter E4188_02720 PF00994 Probable molybdopterin binding domain E4188_02730 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_02730 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_02745 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_02745 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_02770 PF00221 Aromatic amino acid lyase E4188_02780 PF07977 FabA-like domain E4188_02785 PF13193 AMP-binding enzyme C-terminal domain E4188_02785 PF00501 AMP-binding enzyme E4188_02795 PF00550 Phosphopantetheine attachment site E4188_02800 PF00550 Phosphopantetheine attachment site E4188_02825 PF13737 Transposase DDE domain E4188_02845 PF00194 Eukaryotic-type carbonic anhydrase E4188_02850 PF04227 Indigoidine synthase A like protein E4188_02855 PF00294 pfkB family carbohydrate kinase E4188_02860 PF04324 BFD-like [2Fe-2S] binding domain E4188_02860 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4188_02860 PF13806 Rieske-like [2Fe-2S] domain E4188_02860 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4188_02860 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_02860 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4188_02865 PF04324 BFD-like [2Fe-2S] binding domain E4188_02865 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4188_02865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4188_02865 PF13806 Rieske-like [2Fe-2S] domain E4188_02865 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_02865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4188_02870 PF00005 ABC transporter E4188_02875 PF00528 Binding-protein-dependent transport system inner membrane component E4188_02880 PF00005 ABC transporter E4188_02890 PF14824 Sirohaem biosynthesis protein central E4188_02890 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4188_02890 PF10414 Sirohaem synthase dimerisation region E4188_02895 PF00384 Molybdopterin oxidoreductase E4188_02895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4188_02895 PF04324 BFD-like [2Fe-2S] binding domain E4188_02895 PF01568 Molydopterin dinucleotide binding domain E4188_02910 PF00582 Universal stress protein family E4188_02920 PF00171 Aldehyde dehydrogenase family E4188_02925 PF00696 Amino acid kinase family E4188_02925 PF01472 PUA domain E4188_02930 PF07417 Sigma factor-binding transcriptional regulator Crl E4188_02940 PF00156 Phosphoribosyl transferase domain E4188_02955 PF07687 Peptidase dimerisation domain E4188_02955 PF01546 Peptidase family M20/M25/M40 E4188_02965 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_02965 PF00005 ABC transporter E4188_02970 PF00005 ABC transporter E4188_02970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_02980 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_02980 PF00528 Binding-protein-dependent transport system inner membrane component E4188_02985 PF00528 Binding-protein-dependent transport system inner membrane component E4188_02990 PF00593 TonB dependent receptor E4188_02990 PF07715 TonB-dependent Receptor Plug Domain E4188_03000 PF01618 MotA/TolQ/ExbB proton channel family E4188_03005 PF01618 MotA/TolQ/ExbB proton channel family E4188_03010 PF02472 Biopolymer transport protein ExbD/TolR E4188_03025 PF06483 Chitinase C E4188_03025 PF00704 Glycosyl hydrolases family 18 E4188_03055 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4188_03060 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4188_03065 PF00672 HAMP domain E4188_03065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_03075 PF00313 'Cold-shock' DNA-binding domain E4188_03115 PF00929 Exonuclease E4188_03120 PF03193 RsgA GTPase E4188_03125 PF02666 Phosphatidylserine decarboxylase E4188_03130 PF09905 DNA-binding protein VF530 E4188_03145 PF02627 Carboxymuconolactone decarboxylase family E4188_03150 PF12833 Helix-turn-helix domain E4188_03150 PF12852 Cupin E4188_03160 PF00990 Diguanylate cyclase, GGDEF domain E4188_03160 PF03707 Bacterial signalling protein N terminal repeat E4188_03160 PF00563 EAL domain E4188_03165 PF06877 Regulator of ribonuclease activity B E4188_03170 PF00801 PKD domain E4188_03170 PF05547 Immune inhibitor A peptidase M6 E4188_03175 PF16363 GDP-mannose 4,6 dehydratase E4188_03180 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E4188_03180 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E4188_03185 PF08544 GHMP kinases C terminal E4188_03185 PF00288 GHMP kinases N terminal domain E4188_03185 PF10509 Galactokinase galactose-binding signature E4188_03190 PF01263 Aldose 1-epimerase E4188_03195 PF04193 PQ loop repeat E4188_03200 PF00356 Bacterial regulatory proteins, lacI family E4188_03220 PF01609 Transposase DDE domain E4188_03220 PF05598 Transposase domain (DUF772) E4188_03225 PF03466 LysR substrate binding domain E4188_03225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_03245 PF00561 alpha/beta hydrolase fold E4188_03250 PF00664 ABC transporter transmembrane region E4188_03250 PF00005 ABC transporter E4188_03255 PF06004 Bacterial protein of unknown function (DUF903) E4188_03260 PF00581 Rhodanese-like domain E4188_03265 PF04960 Glutaminase E4188_03270 PF04320 Protein with unknown function (DUF469) E4188_03275 PF02390 Putative methyltransferase E4188_03280 PF01483 Proprotein convertase P-domain E4188_03280 PF04389 Peptidase family M28 E4188_03285 PF00155 Aminotransferase class I and II E4188_03290 PF00563 EAL domain E4188_03290 PF12792 CSS motif domain associated with EAL E4188_03295 PF01370 NAD dependent epimerase/dehydratase family E4188_03295 PF08338 Domain of unknown function (DUF1731) E4188_03305 PF00005 ABC transporter E4188_03310 PF13472 GDSL-like Lipase/Acylhydrolase family E4188_03315 PF01584 CheW-like domain E4188_03315 PF00072 Response regulator receiver domain E4188_03320 PF00267 Gram-negative porin E4188_03325 PF00571 CBS domain E4188_03330 PF12848 ABC transporter E4188_03330 PF00005 ABC transporter E4188_03340 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E4188_03370 PF01609 Transposase DDE domain E4188_03370 PF05598 Transposase domain (DUF772) E4188_03395 PF00474 Sodium:solute symporter family E4188_03400 PF03734 L,D-transpeptidase catalytic domain E4188_03400 PF17969 L,D-transpeptidase C-terminal domain E4188_03405 PF00924 Mechanosensitive ion channel E4188_03410 PF00871 Acetokinase family E4188_03415 PF04074 YhcH/YjgK/YiaL E4188_03425 PF13302 Acetyltransferase (GNAT) domain E4188_03430 PF13302 Acetyltransferase (GNAT) domain E4188_03435 PF02868 Thermolysin metallopeptidase, alpha-helical domain E4188_03435 PF07504 Fungalysin/Thermolysin Propeptide Motif E4188_03435 PF01447 Thermolysin metallopeptidase, catalytic domain E4188_03435 PF03413 Peptidase propeptide and YPEB domain E4188_03435 PF04151 Bacterial pre-peptidase C-terminal domain E4188_03440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_03440 PF03466 LysR substrate binding domain E4188_03445 PF07690 Major Facilitator Superfamily E4188_03455 PF02080 TrkA-C domain E4188_03455 PF06826 Predicted Permease Membrane Region E4188_03460 PF03006 Haemolysin-III related E4188_03465 PF00282 Pyridoxal-dependent decarboxylase conserved domain E4188_03470 PF04279 Intracellular septation protein A E4188_03475 PF03795 YCII-related domain E4188_03480 PF00459 Inositol monophosphatase family E4188_03490 PF00483 Nucleotidyl transferase E4188_03495 PF00854 POT family E4188_03500 PF00072 Response regulator receiver domain E4188_03530 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_03560 PF02384 N-6 DNA Methylase E4188_03570 PF02954 Bacterial regulatory protein, Fis family E4188_03595 PF01420 Type I restriction modification DNA specificity domain E4188_03605 PF01695 IstB-like ATP binding protein E4188_03610 PF00665 Integrase core domain E4188_03620 PF00665 Integrase core domain E4188_03625 PF13340 Putative transposase of IS4/5 family (DUF4096) E4188_03630 PF00672 HAMP domain E4188_03630 PF00512 His Kinase A (phospho-acceptor) domain E4188_03630 PF01627 Hpt domain E4188_03630 PF00072 Response regulator receiver domain E4188_03630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4188_03630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_03635 PF00563 EAL domain E4188_03635 PF03707 Bacterial signalling protein N terminal repeat E4188_03635 PF00990 Diguanylate cyclase, GGDEF domain E4188_03655 PF01548 Transposase E4188_03655 PF02371 Transposase IS116/IS110/IS902 family E4188_03670 PF01609 Transposase DDE domain E4188_03670 PF13808 DDE_Tnp_1-associated E4188_03680 PF00563 EAL domain E4188_03680 PF00990 Diguanylate cyclase, GGDEF domain E4188_03680 PF03707 Bacterial signalling protein N terminal repeat E4188_03690 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E4188_03740 PF04002 RadC-like JAB domain E4188_03790 PF05930 Prophage CP4-57 regulatory protein (AlpA) E4188_03805 PF00816 H-NS histone family E4188_03825 PF01810 LysE type translocator E4188_03850 PF01521 Iron-sulphur cluster biosynthesis E4188_03860 PF00654 Voltage gated chloride channel E4188_03865 PF00202 Aminotransferase class-III E4188_03880 PF01569 PAP2 superfamily E4188_03890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_03890 PF03466 LysR substrate binding domain E4188_03895 PF00893 Small Multidrug Resistance protein E4188_03900 PF00893 Small Multidrug Resistance protein E4188_03905 PF01609 Transposase DDE domain E4188_03905 PF13006 Insertion element 4 transposase N-terminal E4188_03910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_03915 PF00905 Penicillin binding protein transpeptidase domain E4188_03915 PF14814 Bifunctional transglycosylase second domain E4188_03915 PF00912 Transglycosylase E4188_03920 PF08482 ATP-dependent helicase C-terminal E4188_03920 PF04408 Helicase associated domain (HA2) E4188_03920 PF00270 DEAD/DEAH box helicase E4188_03920 PF00271 Helicase conserved C-terminal domain E4188_03925 PF02834 LigT like Phosphoesterase E4188_03930 PF17746 SfsA N-terminal OB domain E4188_03930 PF03749 Sugar fermentation stimulation protein RE domain E4188_03935 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4188_03940 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4188_03945 PF01743 Poly A polymerase head domain E4188_03945 PF12626 Polymerase A arginine-rich C-terminus E4188_03945 PF12627 Probable RNA and SrmB- binding site of polymerase A E4188_03950 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4188_03955 PF02548 Ketopantoate hydroxymethyltransferase E4188_03960 PF02569 Pantoate-beta-alanine ligase E4188_03970 PF01061 ABC-2 type transporter E4188_03975 PF00005 ABC transporter E4188_03980 PF00156 Phosphoribosyl transferase domain E4188_03985 PF00440 Bacterial regulatory proteins, tetR family E4188_03990 PF02441 Flavoprotein E4188_03995 PF08245 Mur ligase middle domain E4188_03995 PF01225 Mur ligase family, catalytic domain E4188_03995 PF02875 Mur ligase family, glutamate ligase domain E4188_04000 PF00719 Inorganic pyrophosphatase E4188_04015 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) E4188_04030 PF00005 ABC transporter E4188_04065 PF05598 Transposase domain (DUF772) E4188_04065 PF01609 Transposase DDE domain E4188_04080 PF02080 TrkA-C domain E4188_04080 PF03600 Citrate transporter E4188_04085 PF00009 Elongation factor Tu GTP binding domain E4188_04090 PF01507 Phosphoadenosine phosphosulfate reductase family E4188_04095 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4188_04095 PF14824 Sirohaem biosynthesis protein central E4188_04095 PF10414 Sirohaem synthase dimerisation region E4188_04100 PF01145 SPFH domain / Band 7 family E4188_04100 PF16200 C-terminal region of band_7 E4188_04105 PF01957 NfeD-like C-terminal, partner-binding E4188_04115 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E4188_04115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4188_04120 PF07690 Major Facilitator Superfamily E4188_04125 PF01725 Ham1 family E4188_04130 PF06969 HemN C-terminal domain E4188_04130 PF04055 Radical SAM superfamily E4188_04135 PF03889 Alternative ribosome-rescue factor A E4188_04145 PF13411 MerR HTH family regulatory protein E4188_04150 PF01808 AICARFT/IMPCHase bienzyme E4188_04150 PF02142 MGS-like domain E4188_04155 PF02843 Phosphoribosylglycinamide synthetase, C domain E4188_04155 PF02844 Phosphoribosylglycinamide synthetase, N domain E4188_04155 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E4188_04170 PF00128 Alpha amylase, catalytic domain E4188_04180 PF00665 Integrase core domain E4188_04185 PF01695 IstB-like ATP binding protein E4188_04195 PF04542 Sigma-70 region 2 E4188_04195 PF00140 Sigma-70 factor, region 1.2 E4188_04195 PF03979 Sigma-70 factor, region 1.1 E4188_04195 PF04539 Sigma-70 region 3 E4188_04195 PF04546 Sigma-70, non-essential region E4188_04195 PF04545 Sigma-70, region 4 E4188_04200 PF08278 DNA primase DnaG DnaB-binding E4188_04200 PF10410 DnaB-helicase binding domain of primase E4188_04200 PF01807 CHC2 zinc finger E4188_04200 PF08275 DNA primase catalytic core, N-terminal domain E4188_04205 PF09424 Yqey-like protein E4188_04210 PF01165 Ribosomal protein S21 E4188_04215 PF00814 Glycoprotease family E4188_04220 PF04539 Sigma-70 region 3 E4188_04220 PF04542 Sigma-70 region 2 E4188_04220 PF00140 Sigma-70 factor, region 1.2 E4188_04220 PF04545 Sigma-70, region 4 E4188_04225 PF01476 LysM domain E4188_04225 PF01551 Peptidase family M23 E4188_04230 PF09335 SNARE associated Golgi protein E4188_04240 PF01975 Survival protein SurE E4188_04245 PF01142 tRNA pseudouridine synthase D (TruD) E4188_04250 PF02542 YgbB family E4188_04255 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E4188_04260 PF04977 Septum formation initiator E4188_04265 PF00113 Enolase, C-terminal TIM barrel domain E4188_04265 PF03952 Enolase, N-terminal domain E4188_04270 PF00117 Glutamine amidotransferase class-I E4188_04270 PF06418 CTP synthase N-terminus E4188_04275 PF03819 MazG nucleotide pyrophosphohydrolase domain E4188_04280 PF02824 TGS domain E4188_04280 PF04607 Region found in RelA / SpoT proteins E4188_04280 PF13291 ACT domain E4188_04285 PF05958 tRNA (Uracil-5-)-methyltransferase E4188_04285 PF01938 TRAM domain E4188_04290 PF00672 HAMP domain E4188_04290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_04290 PF00512 His Kinase A (phospho-acceptor) domain E4188_04290 PF00072 Response regulator receiver domain E4188_04290 PF01627 Hpt domain E4188_04290 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4188_04295 PF07308 Protein of unknown function (DUF1456) E4188_04300 PF01510 N-acetylmuramoyl-L-alanine amidase E4188_04305 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E4188_04310 PF02565 Recombination protein O C terminal E4188_04310 PF11967 Recombination protein O N terminal E4188_04315 PF01926 50S ribosome-binding GTPase E4188_04315 PF07650 KH domain E4188_04320 PF14622 Ribonuclease-III-like E4188_04320 PF00035 Double-stranded RNA binding motif E4188_04325 PF10502 Signal peptidase, peptidase S26 E4188_04330 PF00679 Elongation factor G C-terminus E4188_04330 PF03144 Elongation factor Tu domain 2 E4188_04330 PF06421 GTP-binding protein LepA C-terminus E4188_04330 PF00009 Elongation factor Tu GTP binding domain E4188_04340 PF03888 MucB/RseB N-terminal domain E4188_04340 PF17188 MucB/RseB C-terminal domain E4188_04345 PF03872 Anti sigma-E protein RseA, N-terminal domain E4188_04345 PF03873 Anti sigma-E protein RseA, C-terminal domain E4188_04350 PF08281 Sigma-70, region 4 E4188_04350 PF04542 Sigma-70 region 2 E4188_04355 PF02910 Fumarate reductase flavoprotein C-term E4188_04355 PF00890 FAD binding domain E4188_04365 PF03937 Flavinator of succinate dehydrogenase E4188_04370 PF01571 Aminomethyltransferase folate-binding domain E4188_04375 PF03466 LysR substrate binding domain E4188_04375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_04390 PF03091 CutA1 divalent ion tolerance protein E4188_04395 PF11412 Disulphide bond corrector protein DsbC E4188_04395 PF02683 Cytochrome C biogenesis protein transmembrane region E4188_04405 PF01266 FAD dependent oxidoreductase E4188_04410 PF01116 Fructose-bisphosphate aldolase class-II E4188_04415 PF00162 Phosphoglycerate kinase E4188_04420 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4188_04420 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4188_04425 PF00480 ROK family E4188_04430 PF01208 Uroporphyrinogen decarboxylase (URO-D) E4188_04435 PF09297 NADH pyrophosphatase zinc ribbon domain E4188_04435 PF00293 NUDIX domain E4188_04440 PF08239 Bacterial SH3 domain E4188_04445 PF00520 Ion transport protein E4188_04445 PF00027 Cyclic nucleotide-binding domain E4188_04450 PF00672 HAMP domain E4188_04450 PF02743 Cache domain E4188_04450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_04460 PF03710 Glutamate-ammonia ligase adenylyltransferase E4188_04460 PF08335 GlnD PII-uridylyltransferase E4188_04475 PF05170 AsmA family E4188_04480 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4188_04480 PF00326 Prolyl oligopeptidase family E4188_04485 PF13194 Domain of unknown function (DUF4010) E4188_04490 PF12464 Maltose acetyltransferase E4188_04490 PF14602 Hexapeptide repeat of succinyl-transferase E4188_04505 PF05598 Transposase domain (DUF772) E4188_04505 PF01609 Transposase DDE domain E4188_04515 PF14698 Argininosuccinate lyase C-terminal E4188_04515 PF00206 Lyase E4188_04520 PF00764 Arginosuccinate synthase E4188_04525 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4188_04525 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4188_04530 PF00696 Amino acid kinase family E4188_04535 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4188_04535 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4188_04540 PF01546 Peptidase family M20/M25/M40 E4188_04540 PF07687 Peptidase dimerisation domain E4188_04545 PF00311 Phosphoenolpyruvate carboxylase E4188_04550 PF08448 PAS fold E4188_04550 PF13426 PAS domain E4188_04550 PF00563 EAL domain E4188_04550 PF05231 MASE1 E4188_04550 PF00990 Diguanylate cyclase, GGDEF domain E4188_04550 PF08447 PAS fold E4188_04555 PF04073 Aminoacyl-tRNA editing domain E4188_04575 PF00392 Bacterial regulatory proteins, gntR family E4188_04575 PF00155 Aminotransferase class I and II E4188_04585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_04585 PF03466 LysR substrate binding domain E4188_04590 PF03788 LrgA family E4188_04595 PF04172 LrgB-like family E4188_04600 PF03447 Homoserine dehydrogenase, NAD binding domain E4188_04600 PF00742 Homoserine dehydrogenase E4188_04600 PF00696 Amino acid kinase family E4188_04605 PF01053 Cys/Met metabolism PLP-dependent enzyme E4188_04610 PF01340 Met Apo-repressor, MetJ E4188_04620 PF01588 Putative tRNA binding domain E4188_04625 PF03222 Tryptophan/tyrosine permease family E4188_04630 PF00459 Inositol monophosphatase family E4188_04635 PF00293 NUDIX domain E4188_04640 PF13419 Haloacid dehalogenase-like hydrolase E4188_04645 PF00579 tRNA synthetases class I (W and Y) E4188_04645 PF01479 S4 domain E4188_04650 PF00196 Bacterial regulatory proteins, luxR family E4188_04655 PF01203 Type II secretion system (T2SS), protein N E4188_04660 PF04612 Type II secretion system (T2SS), protein M E4188_04665 PF12693 GspL periplasmic domain E4188_04665 PF05134 Type II secretion system (T2SS), protein L E4188_04670 PF03934 Type II secretion system (T2SS), protein K E4188_04690 PF11612 Type II secretion system (T2SS), protein J E4188_04690 PF07963 Prokaryotic N-terminal methylation motif E4188_04695 PF02501 Type II secretion system (T2SS), protein I E4188_04695 PF07963 Prokaryotic N-terminal methylation motif E4188_04700 PF07963 Prokaryotic N-terminal methylation motif E4188_04700 PF12019 Type II transport protein GspH E4188_04705 PF08334 Type II secretion system (T2SS), protein G E4188_04705 PF07963 Prokaryotic N-terminal methylation motif E4188_04710 PF00482 Type II secretion system (T2SS), protein F E4188_04715 PF00437 Type II/IV secretion system protein E4188_04720 PF00263 Bacterial type II and III secretion system protein E4188_04720 PF03958 Bacterial type II/III secretion system short domain E4188_04725 PF11356 Type II secretion system protein C E4188_04730 PF01479 S4 domain E4188_04735 PF01430 Hsp33 protein E4188_04740 PF01293 Phosphoenolpyruvate carboxykinase E4188_04745 PF00392 Bacterial regulatory proteins, gntR family E4188_04750 PF01321 Creatinase/Prolidase N-terminal domain E4188_04750 PF00557 Metallopeptidase family M24 E4188_04760 PF05433 Glycine zipper 2TM domain E4188_04770 PF01865 Protein of unknown function DUF47 E4188_04775 PF01384 Phosphate transporter family E4188_04780 PF12627 Probable RNA and SrmB- binding site of polymerase A E4188_04780 PF01743 Poly A polymerase head domain E4188_04780 PF01966 HD domain E4188_04785 PF13401 AAA domain E4188_04785 PF01471 Putative peptidoglycan binding domain E4188_04790 PF16537 Type II secretion system protein B E4188_04795 PF10576 Iron-sulfur binding domain of endonuclease III E4188_04795 PF00730 HhH-GPD superfamily base excision DNA repair protein E4188_04795 PF14815 NUDIX domain E4188_04795 PF00633 Helix-hairpin-helix motif E4188_04800 PF04362 Bacterial Fe(2+) trafficking E4188_04805 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E4188_04805 PF01464 Transglycosylase SLT domain E4188_04815 PF00657 GDSL-like Lipase/Acylhydrolase E4188_04820 PF01389 OmpA-like transmembrane domain E4188_04820 PF00691 OmpA family E4188_04825 PF03886 ABC-type transport auxiliary lipoprotein component E4188_04830 PF02470 MlaD protein E4188_04840 PF17209 Hfq protein E4188_04845 PF13419 Haloacid dehalogenase-like hydrolase E4188_04850 PF00563 EAL domain E4188_04850 PF00990 Diguanylate cyclase, GGDEF domain E4188_04850 PF00360 Phytochrome region E4188_04850 PF01590 GAF domain E4188_04855 PF00701 Dihydrodipicolinate synthetase family E4188_04860 PF08468 Methyltransferase small domain N-terminal E4188_04860 PF05175 Methyltransferase small domain E4188_04865 PF00483 Nucleotidyl transferase E4188_04870 PF00534 Glycosyl transferases group 1 E4188_04870 PF08323 Starch synthase catalytic domain E4188_04910 PF03553 Na+/H+ antiporter family E4188_04915 PF03466 LysR substrate binding domain E4188_04915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_04920 PF13416 Bacterial extracellular solute-binding protein E4188_04925 PF00005 ABC transporter E4188_04925 PF08402 TOBE domain E4188_04930 PF00528 Binding-protein-dependent transport system inner membrane component E4188_04935 PF00528 Binding-protein-dependent transport system inner membrane component E4188_04940 PF00171 Aldehyde dehydrogenase family E4188_04945 PF01040 UbiA prenyltransferase family E4188_04950 PF02628 Cytochrome oxidase assembly protein E4188_04970 PF00510 Cytochrome c oxidase subunit III E4188_04975 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 E4188_04980 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4188_04985 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4188_04985 PF02790 Cytochrome C oxidase subunit II, transmembrane domain E4188_04990 PF08351 Domain of unknown function (DUF1726) E4188_04990 PF05127 Helicase E4188_04990 PF17176 tRNA-binding domain E4188_04990 PF13718 GNAT acetyltransferase 2 E4188_05000 PF04324 BFD-like [2Fe-2S] binding domain E4188_05005 PF00210 Ferritin-like domain E4188_05010 PF02142 MGS-like domain E4188_05025 PF17763 Glutaminase/Asparaginase C-terminal domain E4188_05025 PF00710 Asparaginase, N-terminal E4188_05035 PF00356 Bacterial regulatory proteins, lacI family E4188_05045 PF00480 ROK family E4188_05050 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit E4188_05055 PF00232 Glycosyl hydrolase family 1 E4188_05060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_05060 PF02378 Phosphotransferase system, EIIC E4188_05065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_05070 PF02378 Phosphotransferase system, EIIC E4188_05080 PF00356 Bacterial regulatory proteins, lacI family E4188_05085 PF00367 phosphotransferase system, EIIB E4188_05085 PF02378 Phosphotransferase system, EIIC E4188_05090 PF11941 Domain of unknown function (DUF3459) E4188_05090 PF00128 Alpha amylase, catalytic domain E4188_05095 PF12464 Maltose acetyltransferase E4188_05095 PF14602 Hexapeptide repeat of succinyl-transferase E4188_05100 PF01037 Lrp/AsnC ligand binding domain E4188_05105 PF00892 EamA-like transporter family E4188_05130 PF00691 OmpA family E4188_05130 PF01389 OmpA-like transmembrane domain E4188_05155 PF02660 Glycerol-3-phosphate acyltransferase E4188_05160 PF02152 Dihydroneopterin aldolase E4188_05165 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E4188_05175 PF07690 Major Facilitator Superfamily E4188_05180 PF07683 Cobalamin synthesis protein cobW C-terminal domain E4188_05180 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4188_05190 PF01810 LysE type translocator E4188_05195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_05195 PF03466 LysR substrate binding domain E4188_05200 PF00563 EAL domain E4188_05200 PF12792 CSS motif domain associated with EAL E4188_05205 PF06434 Aconitate hydratase 2 N-terminus E4188_05205 PF11791 Aconitate B N-terminal domain E4188_05205 PF00330 Aconitase family (aconitate hydratase) E4188_05210 PF01734 Patatin-like phospholipase E4188_05215 PF02743 Cache domain E4188_05215 PF00672 HAMP domain E4188_05215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_05235 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_05235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_05240 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4188_05240 PF00364 Biotin-requiring enzyme E4188_05240 PF02817 e3 binding domain E4188_05245 PF00456 Transketolase, thiamine diphosphate binding domain E4188_05245 PF17831 Pyruvate dehydrogenase E1 component middle domain E4188_05250 PF00392 Bacterial regulatory proteins, gntR family E4188_05250 PF07729 FCD domain E4188_05255 PF01510 N-acetylmuramoyl-L-alanine amidase E4188_05265 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E4188_05265 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E4188_05270 PF12323 Helix-turn-helix domain E4188_05285 PF07963 Prokaryotic N-terminal methylation motif E4188_05290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E4188_05290 PF00437 Type II/IV secretion system protein E4188_05295 PF00482 Type II secretion system (T2SS), protein F E4188_05300 PF01478 Type IV leader peptidase family E4188_05300 PF06750 Bacterial Peptidase A24 N-terminal domain E4188_05305 PF01121 Dephospho-CoA kinase E4188_05310 PF07072 Cell division protein E4188_05315 PF03884 DNA gyrase inhibitor YacG E4188_05320 PF00293 NUDIX domain E4188_05325 PF07517 SecA DEAD-like domain E4188_05325 PF01043 SecA preprotein cross-linking domain E4188_05325 PF07516 SecA Wing and Scaffold domain E4188_05325 PF02810 SEC-C motif E4188_05335 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E4188_05340 PF00091 Tubulin/FtsZ family, GTPase domain E4188_05340 PF12327 FtsZ family, C-terminal domain E4188_05345 PF02491 SHS2 domain inserted in FTSA E4188_05350 PF03799 Cell division protein FtsQ E4188_05350 PF08478 POTRA domain, FtsQ-type E4188_05355 PF02875 Mur ligase family, glutamate ligase domain E4188_05355 PF08245 Mur ligase middle domain E4188_05355 PF01225 Mur ligase family, catalytic domain E4188_05360 PF04101 Glycosyltransferase family 28 C-terminal domain E4188_05360 PF03033 Glycosyltransferase family 28 N-terminal domain E4188_05365 PF01098 Cell cycle protein E4188_05370 PF02875 Mur ligase family, glutamate ligase domain E4188_05370 PF08245 Mur ligase middle domain E4188_05375 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E4188_05375 PF00953 Glycosyl transferase family 4 E4188_05380 PF01225 Mur ligase family, catalytic domain E4188_05380 PF02875 Mur ligase family, glutamate ligase domain E4188_05380 PF08245 Mur ligase middle domain E4188_05385 PF01225 Mur ligase family, catalytic domain E4188_05385 PF08245 Mur ligase middle domain E4188_05385 PF02875 Mur ligase family, glutamate ligase domain E4188_05390 PF03717 Penicillin-binding Protein dimerisation domain E4188_05390 PF00905 Penicillin binding protein transpeptidase domain E4188_05395 PF04999 Cell division protein FtsL E4188_05400 PF01795 MraW methylase family E4188_05405 PF02381 MraZ protein, putative antitoxin-like E4188_05415 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4188_05420 PF04348 LppC putative lipoprotein E4188_05425 PF02021 Uncharacterised protein family UPF0102 E4188_05430 PF13580 SIS domain E4188_05435 PF04972 BON domain E4188_05440 PF04386 Stringent starvation protein B E4188_05445 PF00043 Glutathione S-transferase, C-terminal domain E4188_05445 PF02798 Glutathione S-transferase, N-terminal domain E4188_05450 PF02167 Cytochrome C1 family E4188_05455 PF00033 Cytochrome b/b6/petB E4188_05455 PF00032 Cytochrome b(C-terminal)/b6/petD E4188_05460 PF00355 Rieske [2Fe-2S] domain E4188_05460 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E4188_05465 PF00380 Ribosomal protein S9/S16 E4188_05470 PF00572 Ribosomal protein L13 E4188_05475 PF03969 AFG1-like ATPase E4188_05485 PF00595 PDZ domain E4188_05485 PF13180 PDZ domain E4188_05490 PF13180 PDZ domain E4188_05500 PF00381 PTS HPr component phosphorylation site E4188_05505 PF03668 P-loop ATPase protein family E4188_05510 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4188_05515 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4188_05520 PF04552 Sigma-54, DNA binding domain E4188_05520 PF04963 Sigma-54 factor, core binding domain E4188_05520 PF00309 Sigma-54 factor, Activator interacting domain (AID) E4188_05525 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4188_05525 PF00005 ABC transporter E4188_05530 PF03968 OstA-like protein E4188_05535 PF06835 Lipopolysaccharide-assembly, LptC-related E4188_05545 PF01380 SIS domain E4188_05545 PF00571 CBS domain E4188_05550 PF00005 ABC transporter E4188_05555 PF02405 Permease MlaE E4188_05560 PF02470 MlaD protein E4188_05565 PF05494 MlaC protein E4188_05575 PF01722 BolA-like protein E4188_05580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4188_05585 PF01523 Putative modulator of DNA gyrase E4188_05590 PF04751 Protein of unknown function (DUF615) E4188_05600 PF04363 Protein of unknown function (DUF496) E4188_05630 PF01381 Helix-turn-helix E4188_05630 PF07883 Cupin domain E4188_05635 PF03594 Benzoate membrane transport protein E4188_05645 PF01037 Lrp/AsnC ligand binding domain E4188_05655 PF04204 Homoserine O-succinyltransferase E4188_05665 PF02464 Competence-damaged protein E4188_05665 PF00994 Probable molybdopterin binding domain E4188_05670 PF04307 LexA-binding, inner membrane-associated putative hydrolase E4188_05685 PF07722 Peptidase C26 E4188_05695 PF13419 Haloacid dehalogenase-like hydrolase E4188_05700 PF00589 Phage integrase family E4188_05700 PF02899 Phage integrase, N-terminal SAM-like domain E4188_05710 PF01678 Diaminopimelate epimerase E4188_05715 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4188_05715 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4188_05725 PF01491 Frataxin-like domain E4188_05730 PF02230 Phospholipase/Carboxylesterase E4188_05735 PF12633 Adenylate cyclase NT domain E4188_05735 PF01295 Adenylate cyclase, class-I E4188_05740 PF03900 Porphobilinogen deaminase, C-terminal domain E4188_05740 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E4188_05745 PF02602 Uroporphyrinogen-III synthase HemD E4188_05750 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E4188_05755 PF07719 Tetratricopeptide repeat E4188_05755 PF07219 HemY protein N-terminus E4188_05760 PF03692 Putative zinc- or iron-chelating domain E4188_05765 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E4188_05770 PF00267 Gram-negative porin E4188_05775 PF00583 Acetyltransferase (GNAT) family E4188_05780 PF00593 TonB dependent receptor E4188_05780 PF07715 TonB-dependent Receptor Plug Domain E4188_05795 PF13508 Acetyltransferase (GNAT) domain E4188_05795 PF00583 Acetyltransferase (GNAT) family E4188_05800 PF01638 HxlR-like helix-turn-helix E4188_05805 PF08803 Putative mono-oxygenase ydhR E4188_05820 PF06055 Exopolysaccharide synthesis, ExoD E4188_05825 PF00990 Diguanylate cyclase, GGDEF domain E4188_05825 PF17158 Membrane-associated sensor, integral membrane domain E4188_05830 PF13036 Peptidoglycan-synthase activator LpoB E4188_05835 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_05850 PF04055 Radical SAM superfamily E4188_05850 PF06968 Biotin and Thiamin Synthesis associated domain E4188_05855 PF05690 Thiazole biosynthesis protein ThiG E4188_05865 PF00899 ThiF family E4188_05870 PF02581 Thiamine monophosphate synthase E4188_05875 PF13667 ThiC-associated domain E4188_05875 PF01964 Radical SAM ThiC family E4188_05880 PF17425 Arylsulfotransferase Ig-like domain E4188_05880 PF05935 Arylsulfotransferase (ASST) E4188_05895 PF00486 Transcriptional regulatory protein, C terminal E4188_05895 PF00072 Response regulator receiver domain E4188_05900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_05905 PF08443 RimK-like ATP-grasp domain E4188_05905 PF18030 RimK PreATP-grasp domain E4188_05910 PF02574 Homocysteine S-methyltransferase E4188_05910 PF00809 Pterin binding enzyme E4188_05910 PF02965 Vitamin B12 dependent methionine synthase, activation domain E4188_05910 PF02607 B12 binding domain E4188_05910 PF02310 B12 binding domain E4188_05915 PF00999 Sodium/hydrogen exchanger family E4188_05935 PF04228 Putative neutral zinc metallopeptidase E4188_05945 PF07690 Major Facilitator Superfamily E4188_05960 PF01523 Putative modulator of DNA gyrase E4188_05965 PF00795 Carbon-nitrogen hydrolase E4188_05970 PF13116 Protein of unknown function E4188_05970 PF13502 AsmA-like C-terminal region E4188_05975 PF00575 S1 RNA binding domain E4188_05975 PF10150 Ribonuclease E/G family E4188_05980 PF02545 Maf-like protein E4188_05985 PF04093 rod shape-determining protein MreD E4188_05990 PF04085 rod shape-determining protein MreC E4188_06025 PF07963 Prokaryotic N-terminal methylation motif E4188_06025 PF08334 Type II secretion system (T2SS), protein G E4188_06040 PF00482 Type II secretion system (T2SS), protein F E4188_06045 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E4188_06045 PF00437 Type II/IV secretion system protein E4188_06065 PF13808 DDE_Tnp_1-associated E4188_06065 PF01609 Transposase DDE domain E4188_06100 PF00563 EAL domain E4188_06100 PF12792 CSS motif domain associated with EAL E4188_06105 PF01699 Sodium/calcium exchanger protein E4188_06110 PF13006 Insertion element 4 transposase N-terminal E4188_06110 PF01609 Transposase DDE domain E4188_06115 PF00221 Aromatic amino acid lyase E4188_06120 PF17391 Urocanase N-terminal domain E4188_06120 PF01175 Urocanase Rossmann-like domain E4188_06120 PF17392 Urocanase C-terminal domain E4188_06125 PF00491 Arginase family E4188_06130 PF01979 Amidohydrolase family E4188_06135 PF00392 Bacterial regulatory proteins, gntR family E4188_06135 PF07702 UTRA domain E4188_06140 PF00484 Carbonic anhydrase E4188_06145 PF00140 Sigma-70 factor, region 1.2 E4188_06145 PF04542 Sigma-70 region 2 E4188_06145 PF04545 Sigma-70, region 4 E4188_06150 PF18075 FtsX extracellular domain E4188_06155 PF00005 ABC transporter E4188_06160 PF02881 SRP54-type protein, helical bundle domain E4188_06160 PF00448 SRP54-type protein, GTPase domain E4188_06180 PF07226 Protein of unknown function (DUF1422) E4188_06185 PF00440 Bacterial regulatory proteins, tetR family E4188_06195 PF13091 PLD-like domain E4188_06200 PF01464 Transglycosylase SLT domain E4188_06200 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_06210 PF02416 mttA/Hcf106 family E4188_06215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_06215 PF03466 LysR substrate binding domain E4188_06220 PF01914 MarC family integral membrane protein E4188_06225 PF10678 Protein of unknown function (DUF2492) E4188_06230 PF00375 Sodium:dicarboxylate symporter family E4188_06240 PF03466 LysR substrate binding domain E4188_06240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_06245 PF13533 Biotin-lipoyl like E4188_06250 PF07690 Major Facilitator Superfamily E4188_06255 PF07947 YhhN family E4188_06275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4188_06275 PF00326 Prolyl oligopeptidase family E4188_06290 PF02525 Flavodoxin-like fold E4188_06295 PF02254 TrkA-N domain E4188_06295 PF00999 Sodium/hydrogen exchanger family E4188_06315 PF13808 DDE_Tnp_1-associated E4188_06315 PF01609 Transposase DDE domain E4188_06325 PF01548 Transposase E4188_06325 PF02371 Transposase IS116/IS110/IS902 family E4188_06365 PF01196 Ribosomal protein L17 E4188_06370 PF01000 RNA polymerase Rpb3/RpoA insert domain E4188_06370 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E4188_06370 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E4188_06375 PF00163 Ribosomal protein S4/S9 N-terminal domain E4188_06375 PF01479 S4 domain E4188_06380 PF00411 Ribosomal protein S11 E4188_06385 PF00416 Ribosomal protein S13/S18 E4188_06390 PF00444 Ribosomal protein L36 E4188_06395 PF00344 SecY translocase E4188_06400 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E4188_06405 PF00327 Ribosomal protein L30p/L7e E4188_06410 PF00333 Ribosomal protein S5, N-terminal domain E4188_06410 PF03719 Ribosomal protein S5, C-terminal domain E4188_06415 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E4188_06420 PF00347 Ribosomal protein L6 E4188_06425 PF00410 Ribosomal protein S8 E4188_06430 PF00253 Ribosomal protein S14p/S29e E4188_06435 PF00281 Ribosomal protein L5 E4188_06435 PF00673 ribosomal L5P family C-terminus E4188_06440 PF00467 KOW motif E4188_06440 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E4188_06445 PF00238 Ribosomal protein L14p/L23e E4188_06450 PF00366 Ribosomal protein S17 E4188_06455 PF00831 Ribosomal L29 protein E4188_06460 PF00252 Ribosomal protein L16p/L10e E4188_06465 PF07650 KH domain E4188_06465 PF00189 Ribosomal protein S3, C-terminal domain E4188_06470 PF00237 Ribosomal protein L22p/L17e E4188_06475 PF00203 Ribosomal protein S19 E4188_06480 PF03947 Ribosomal Proteins L2, C-terminal domain E4188_06480 PF00181 Ribosomal Proteins L2, RNA binding domain E4188_06485 PF00276 Ribosomal protein L23 E4188_06490 PF00573 Ribosomal protein L4/L1 family E4188_06495 PF00297 Ribosomal protein L3 E4188_06500 PF00338 Ribosomal protein S10p/S20e E4188_06510 PF00672 HAMP domain E4188_06510 PF00512 His Kinase A (phospho-acceptor) domain E4188_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_06515 PF00486 Transcriptional regulatory protein, C terminal E4188_06515 PF00072 Response regulator receiver domain E4188_06550 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) E4188_06555 PF01609 Transposase DDE domain E4188_06565 PF01609 Transposase DDE domain E4188_06585 PF01609 Transposase DDE domain E4188_06585 PF13808 DDE_Tnp_1-associated E4188_06590 PF13358 DDE superfamily endonuclease E4188_06590 PF13592 Winged helix-turn helix E4188_06605 PF01625 Peptide methionine sulfoxide reductase E4188_06610 PF01625 Peptide methionine sulfoxide reductase E4188_06615 PF01641 SelR domain E4188_06640 PF00665 Integrase core domain E4188_06645 PF01695 IstB-like ATP binding protein E4188_06655 PF08448 PAS fold E4188_06655 PF00990 Diguanylate cyclase, GGDEF domain E4188_06660 PF01625 Peptide methionine sulfoxide reductase E4188_06670 PF01641 SelR domain E4188_06675 PF00462 Glutaredoxin E4188_06680 PF01625 Peptide methionine sulfoxide reductase E4188_06685 PF12833 Helix-turn-helix domain E4188_06685 PF02311 AraC-like ligand binding domain E4188_06720 PF00817 impB/mucB/samB family E4188_06720 PF11799 impB/mucB/samB family C-terminal domain E4188_06720 PF13438 Domain of unknown function (DUF4113) E4188_06725 PF00717 Peptidase S24-like E4188_06735 PF02384 N-6 DNA Methylase E4188_06745 PF01609 Transposase DDE domain E4188_06745 PF13808 DDE_Tnp_1-associated E4188_06750 PF01420 Type I restriction modification DNA specificity domain E4188_06765 PF01272 Transcription elongation factor, GreA/GreB, C-term E4188_06765 PF03449 Transcription elongation factor, N-terminal E4188_06790 PF17674 HHH domain E4188_06790 PF16921 Tex protein YqgF-like domain E4188_06790 PF09371 Tex-like protein N-terminal domain E4188_06790 PF00575 S1 RNA binding domain E4188_06805 PF00561 alpha/beta hydrolase fold E4188_06810 PF00156 Phosphoribosyl transferase domain E4188_06815 PF01521 Iron-sulphur cluster biosynthesis E4188_06815 PF01106 NifU-like domain E4188_06820 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E4188_06820 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E4188_06825 PF02556 Preprotein translocase subunit SecB E4188_06830 PF00581 Rhodanese-like domain E4188_06835 PF01676 Metalloenzyme superfamily E4188_06835 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E4188_06840 PF01551 Peptidase family M23 E4188_06850 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4188_06850 PF00356 Bacterial regulatory proteins, lacI family E4188_06855 PF01081 KDPG and KHG aldolase E4188_06860 PF00920 Dehydratase family E4188_06865 PF01202 Shikimate kinase E4188_06870 PF02447 GntP family permease E4188_06875 PF13091 PLD-like domain E4188_06885 PF17191 RecG wedge domain E4188_06885 PF00271 Helicase conserved C-terminal domain E4188_06885 PF00270 DEAD/DEAH box helicase E4188_06895 PF09500 Putative thioesterase (yiiD_Cterm) E4188_06895 PF00583 Acetyltransferase (GNAT) family E4188_06905 PF02580 D-Tyr-tRNA(Tyr) deacylase E4188_06910 PF03631 Virulence factor BrkB E4188_06920 PF03951 Glutamine synthetase, beta-Grasp domain E4188_06920 PF00120 Glutamine synthetase, catalytic domain E4188_06930 PF00989 PAS fold E4188_06930 PF00512 His Kinase A (phospho-acceptor) domain E4188_06930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_06935 PF02954 Bacterial regulatory protein, Fis family E4188_06935 PF00072 Response regulator receiver domain E4188_06935 PF00158 Sigma-54 interaction domain E4188_06940 PF00962 Adenosine/AMP deaminase E4188_06945 PF06969 HemN C-terminal domain E4188_06945 PF04055 Radical SAM superfamily E4188_06950 PF10675 Protein of unknown function (DUF2489) E4188_06955 PF04220 Der GTPase activator (YihI) E4188_06960 PF00034 Cytochrome c E4188_06965 PF01926 50S ribosome-binding GTPase E4188_06970 PF08501 Shikimate dehydrogenase substrate binding domain E4188_06970 PF01488 Shikimate / quinate 5-dehydrogenase E4188_06970 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E4188_06975 PF01218 Coproporphyrinogen III oxidase E4188_06980 PF01300 Telomere recombination E4188_06985 PF01396 Topoisomerase DNA binding C4 zinc finger E4188_06990 PF04361 Protein of unknown function (DUF494) E4188_06995 PF02481 DNA recombination-mediator protein A E4188_06995 PF17782 DprA winged helix domain E4188_07005 PF01327 Polypeptide deformylase E4188_07010 PF02911 Formyl transferase, C-terminal domain E4188_07010 PF00551 Formyl transferase E4188_07015 PF01029 NusB family E4188_07015 PF01189 16S rRNA methyltransferase RsmB/F E4188_07020 PF02254 TrkA-N domain E4188_07020 PF02080 TrkA-C domain E4188_07025 PF02386 Cation transport protein E4188_07030 PF02646 RmuC family E4188_07045 PF02082 Transcriptional regulator E4188_07050 PF00294 pfkB family carbohydrate kinase E4188_07055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_07055 PF03466 LysR substrate binding domain E4188_07060 PF00117 Glutamine amidotransferase class-I E4188_07060 PF00958 GMP synthase C terminal domain E4188_07060 PF02540 NAD synthase E4188_07065 PF00171 Aldehyde dehydrogenase family E4188_07070 PF00202 Aminotransferase class-III E4188_07075 PF07883 Cupin domain E4188_07075 PF01381 Helix-turn-helix E4188_07080 PF00171 Aldehyde dehydrogenase family E4188_07090 PF00892 EamA-like transporter family E4188_07095 PF12833 Helix-turn-helix domain E4188_07100 PF01810 LysE type translocator E4188_07105 PF04143 Sulphur transport E4188_07110 PF06206 CpeT/CpcT family (DUF1001) E4188_07130 PF14001 YdfZ protein E4188_07140 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_07140 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_07160 PF01609 Transposase DDE domain E4188_07160 PF13808 DDE_Tnp_1-associated E4188_07180 PF13361 UvrD-like helicase C-terminal domain E4188_07180 PF00580 UvrD/REP helicase N-terminal domain E4188_07215 PF13006 Insertion element 4 transposase N-terminal E4188_07215 PF01609 Transposase DDE domain E4188_07220 PF04389 Peptidase family M28 E4188_07220 PF04151 Bacterial pre-peptidase C-terminal domain E4188_07225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_07225 PF03466 LysR substrate binding domain E4188_07230 PF00107 Zinc-binding dehydrogenase E4188_07230 PF08240 Alcohol dehydrogenase GroES-like domain E4188_07235 PF00756 Putative esterase E4188_07250 PF12867 DinB superfamily E4188_07250 PF03781 Sulfatase-modifying factor enzyme 1 E4188_07255 PF13593 SBF-like CPA transporter family (DUF4137) E4188_07260 PF13520 Amino acid permease E4188_07265 PF01588 Putative tRNA binding domain E4188_07270 PF13520 Amino acid permease E4188_07275 PF04074 YhcH/YjgK/YiaL E4188_07280 PF16353 Domain of unknown function(DUF4981) E4188_07280 PF00703 Glycosyl hydrolases family 2 E4188_07280 PF02836 Glycosyl hydrolases family 2, TIM barrel domain E4188_07280 PF02837 Glycosyl hydrolases family 2, sugar binding domain E4188_07280 PF02929 Beta galactosidase small chain E4188_07285 PF00356 Bacterial regulatory proteins, lacI family E4188_07325 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_07330 PF01367 5'-3' exonuclease, C-terminal SAM fold E4188_07330 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4188_07330 PF00476 DNA polymerase family A E4188_07330 PF01612 3'-5' exonuclease E4188_07345 PF06005 Cell division protein ZapB E4188_07355 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_07355 PF06426 Serine acetyltransferase, N-terminal E4188_07360 PF16916 Dimerisation domain of Zinc Transporter E4188_07360 PF01545 Cation efflux family E4188_07365 PF00486 Transcriptional regulatory protein, C terminal E4188_07365 PF00072 Response regulator receiver domain E4188_07370 PF16527 Two-component sensor protein CpxA, periplasmic domain E4188_07370 PF00672 HAMP domain E4188_07370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_07370 PF00512 His Kinase A (phospho-acceptor) domain E4188_07375 PF00588 SpoU rRNA Methylase family E4188_07380 PF01554 MatE E4188_07395 PF01726 LexA DNA binding domain E4188_07395 PF00717 Peptidase S24-like E4188_07400 PF01553 Acyltransferase E4188_07405 PF01040 UbiA prenyltransferase family E4188_07410 PF04345 Chorismate lyase E4188_07415 PF03748 Flagellar basal body-associated protein FliL E4188_07430 PF08240 Alcohol dehydrogenase GroES-like domain E4188_07430 PF00107 Zinc-binding dehydrogenase E4188_07450 PF04932 O-Antigen ligase E4188_07455 PF13439 Glycosyltransferase Family 4 E4188_07460 PF01370 NAD dependent epimerase/dehydratase family E4188_07465 PF08360 QacR-like protein, C-terminal region E4188_07465 PF00440 Bacterial regulatory proteins, tetR family E4188_07470 PF00155 Aminotransferase class I and II E4188_07475 PF08240 Alcohol dehydrogenase GroES-like domain E4188_07475 PF00107 Zinc-binding dehydrogenase E4188_07485 PF00563 EAL domain E4188_07485 PF00990 Diguanylate cyclase, GGDEF domain E4188_07485 PF03707 Bacterial signalling protein N terminal repeat E4188_07490 PF00580 UvrD/REP helicase N-terminal domain E4188_07490 PF13361 UvrD-like helicase C-terminal domain E4188_07495 PF00266 Aminotransferase class-V E4188_07500 PF02657 Fe-S metabolism associated domain E4188_07505 PF00899 ThiF family E4188_07540 PF12724 Flavodoxin domain E4188_07545 PF02386 Cation transport protein E4188_07550 PF09186 Domain of unknown function (DUF1949) E4188_07550 PF01205 Uncharacterized protein family UPF0029 E4188_07555 PF00557 Metallopeptidase family M24 E4188_07560 PF00501 AMP-binding enzyme E4188_07560 PF13193 AMP-binding enzyme C-terminal domain E4188_07565 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4188_07565 PF00378 Enoyl-CoA hydratase/isomerase E4188_07565 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4188_07570 PF00108 Thiolase, N-terminal domain E4188_07570 PF02803 Thiolase, C-terminal domain E4188_07575 PF00072 Response regulator receiver domain E4188_07575 PF00486 Transcriptional regulatory protein, C terminal E4188_07580 PF00512 His Kinase A (phospho-acceptor) domain E4188_07580 PF00672 HAMP domain E4188_07580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_07585 PF01547 Bacterial extracellular solute-binding protein E4188_07595 PF01206 Sulfurtransferase TusA E4188_07600 PF01042 Endoribonuclease L-PSP E4188_07605 PF00691 OmpA family E4188_07605 PF13488 Glycine zipper E4188_07630 PF03352 Methyladenine glycosylase E4188_07635 PF02091 Glycyl-tRNA synthetase alpha subunit E4188_07640 PF05746 DALR anticodon binding domain E4188_07640 PF02092 Glycyl-tRNA synthetase beta subunit E4188_07670 PF03222 Tryptophan/tyrosine permease family E4188_07675 PF03222 Tryptophan/tyrosine permease family E4188_07680 PF01212 Beta-eliminating lyase E4188_07690 PF12801 4Fe-4S binding domain E4188_07700 PF18113 Rubredoxin binding C-terminal domain E4188_07700 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_07705 PF00258 Flavodoxin E4188_07705 PF00753 Metallo-beta-lactamase superfamily E4188_07705 PF00301 Rubredoxin E4188_07710 PF00158 Sigma-54 interaction domain E4188_07710 PF01590 GAF domain E4188_07715 PF00356 Bacterial regulatory proteins, lacI family E4188_07720 PF13458 Periplasmic binding protein E4188_07725 PF02653 Branched-chain amino acid transport system / permease component E4188_07730 PF11862 Domain of unknown function (DUF3382) E4188_07730 PF02653 Branched-chain amino acid transport system / permease component E4188_07735 PF12399 Branched-chain amino acid ATP-binding cassette transporter E4188_07735 PF00005 ABC transporter E4188_07740 PF00005 ABC transporter E4188_07745 PF12833 Helix-turn-helix domain E4188_07755 PF00581 Rhodanese-like domain E4188_07760 PF01694 Rhomboid family E4188_07760 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E4188_07765 PF12262 Bacterial virulence factor lipase N-terminal E4188_07770 PF04380 Membrane fusogenic activity E4188_07775 PF00175 Oxidoreductase NAD-binding domain E4188_07780 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E4188_07790 PF07497 Rho termination factor, RNA-binding domain E4188_07790 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4188_07790 PF07498 Rho termination factor, N-terminal domain E4188_07795 PF00085 Thioredoxin E4188_07800 PF00271 Helicase conserved C-terminal domain E4188_07800 PF00270 DEAD/DEAH box helicase E4188_07805 PF02541 Ppx/GppA phosphatase family E4188_07820 PF04445 Putative SAM-dependent methyltransferase E4188_07825 PF03707 Bacterial signalling protein N terminal repeat E4188_07825 PF00990 Diguanylate cyclase, GGDEF domain E4188_07825 PF00563 EAL domain E4188_07830 PF01432 Peptidase family M3 E4188_07835 PF00490 Delta-aminolevulinic acid dehydratase E4188_07840 PF01026 TatD related DNase E4188_07845 PF00902 Sec-independent protein translocase protein (TatC) E4188_07850 PF02416 mttA/Hcf106 family E4188_07855 PF02416 mttA/Hcf106 family E4188_07860 PF03109 ABC1 family E4188_07865 PF02036 SCP-2 sterol transfer family E4188_07870 PF01209 ubiE/COQ5 methyltransferase family E4188_07875 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E4188_07880 PF07969 Amidohydrolase family E4188_07885 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin E4188_07920 PF03544 Gram-negative bacterial TonB protein C-terminal E4188_07925 PF02472 Biopolymer transport protein ExbD/TolR E4188_07930 PF01618 MotA/TolQ/ExbB proton channel family E4188_07935 PF01618 MotA/TolQ/ExbB proton channel family E4188_07945 PF00196 Bacterial regulatory proteins, luxR family E4188_07945 PF03472 Autoinducer binding domain E4188_07955 PF00270 DEAD/DEAH box helicase E4188_07955 PF00271 Helicase conserved C-terminal domain E4188_07955 PF09369 Domain of unknown function (DUF1998) E4188_07970 PF05598 Transposase domain (DUF772) E4188_07970 PF01609 Transposase DDE domain E4188_07980 PF06527 TniQ E4188_07980 PF15978 Tn7-like transposition protein D E4188_07985 PF11426 Tn7 transposition regulator TnsC E4188_07985 PF13401 AAA domain E4188_07990 PF00665 Integrase core domain E4188_07995 PF08721 TnsA endonuclease C terminal E4188_07995 PF08722 TnsA endonuclease N terminal E4188_08010 PF01380 SIS domain E4188_08015 PF00455 DeoR C terminal sensor domain E4188_08015 PF08220 DeoR-like helix-turn-helix domain E4188_08020 PF00072 Response regulator receiver domain E4188_08020 PF00486 Transcriptional regulatory protein, C terminal E4188_08025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08025 PF00512 His Kinase A (phospho-acceptor) domain E4188_08025 PF00672 HAMP domain E4188_08035 PF01609 Transposase DDE domain E4188_08035 PF13006 Insertion element 4 transposase N-terminal E4188_08040 PF06123 Inner membrane protein CreD E4188_08045 PF14602 Hexapeptide repeat of succinyl-transferase E4188_08045 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_08045 PF12804 MobA-like NTP transferase domain E4188_08050 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E4188_08050 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E4188_08055 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4188_08055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4188_08060 PF00231 ATP synthase E4188_08065 PF00306 ATP synthase alpha/beta chain, C terminal domain E4188_08065 PF02874 ATP synthase alpha/beta family, beta-barrel domain E4188_08065 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E4188_08070 PF00213 ATP synthase delta (OSCP) subunit E4188_08075 PF00430 ATP synthase B/B' CF(0) E4188_08080 PF00137 ATP synthase subunit C E4188_08085 PF00119 ATP synthase A chain E4188_08095 PF17762 HTH domain found in ParB protein E4188_08095 PF02195 ParB-like nuclease domain E4188_08100 PF13614 AAA domain E4188_08105 PF02527 rRNA small subunit methyltransferase G E4188_08110 PF13932 GidA associated domain E4188_08110 PF01134 Glucose inhibited division protein A E4188_08115 PF00258 Flavodoxin E4188_08120 PF07715 TonB-dependent Receptor Plug Domain E4188_08120 PF00593 TonB dependent receptor E4188_08125 PF00005 ABC transporter E4188_08130 PF00005 ABC transporter E4188_08135 PF01497 Periplasmic binding protein E4188_08140 PF01032 FecCD transport family E4188_08145 PF01609 Transposase DDE domain E4188_08145 PF13006 Insertion element 4 transposase N-terminal E4188_08150 PF10396 GTP-binding protein TrmE N-terminus E4188_08150 PF12631 MnmE helical domain E4188_08150 PF01926 50S ribosome-binding GTPase E4188_08155 PF14849 YidC periplasmic domain E4188_08155 PF02096 60Kd inner membrane protein E4188_08160 PF01809 Putative membrane protein insertion efficiency factor E4188_08165 PF00825 Ribonuclease P E4188_08170 PF00468 Ribosomal protein L34 E4188_08180 PF00528 Binding-protein-dependent transport system inner membrane component E4188_08185 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_08190 PF00308 Bacterial dnaA protein E4188_08190 PF08299 Bacterial dnaA protein helix-turn-helix E4188_08190 PF11638 DnaA N-terminal domain E4188_08195 PF02767 DNA polymerase III beta subunit, central domain E4188_08195 PF02768 DNA polymerase III beta subunit, C-terminal domain E4188_08195 PF00712 DNA polymerase III beta subunit, N-terminal domain E4188_08200 PF02463 RecF/RecN/SMC N terminal domain E4188_08205 PF00204 DNA gyrase B E4188_08205 PF00986 DNA gyrase B subunit, carboxyl terminus E4188_08205 PF18053 DNA gyrase B subunit insert domain E4188_08205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08205 PF01751 Toprim domain E4188_08215 PF13280 WYL domain E4188_08215 PF08279 HTH domain E4188_08225 PF12706 Beta-lactamase superfamily domain E4188_08230 PF00011 Hsp20/alpha crystallin family E4188_08235 PF00011 Hsp20/alpha crystallin family E4188_08240 PF00155 Aminotransferase class I and II E4188_08255 PF07690 Major Facilitator Superfamily E4188_08260 PF00486 Transcriptional regulatory protein, C terminal E4188_08260 PF00072 Response regulator receiver domain E4188_08265 PF02702 Osmosensitive K+ channel His kinase sensor domain E4188_08265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08265 PF13492 GAF domain E4188_08265 PF13493 Domain of unknown function (DUF4118) E4188_08265 PF00512 His Kinase A (phospho-acceptor) domain E4188_08270 PF02669 K+-transporting ATPase, c chain E4188_08280 PF03814 Potassium-transporting ATPase A subunit E4188_08290 PF01638 HxlR-like helix-turn-helix E4188_08295 PF12146 Serine aminopeptidase, S33 E4188_08300 PF00107 Zinc-binding dehydrogenase E4188_08300 PF08240 Alcohol dehydrogenase GroES-like domain E4188_08310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_08315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08315 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_08315 PF00512 His Kinase A (phospho-acceptor) domain E4188_08320 PF00873 AcrB/AcrD/AcrF family E4188_08325 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_08330 PF00440 Bacterial regulatory proteins, tetR family E4188_08365 PF12146 Serine aminopeptidase, S33 E4188_08370 PF00588 SpoU rRNA Methylase family E4188_08370 PF12105 SpoU, rRNA methylase, C-terminal E4188_08375 PF13291 ACT domain E4188_08375 PF04607 Region found in RelA / SpoT proteins E4188_08375 PF02824 TGS domain E4188_08380 PF01192 RNA polymerase Rpb6 E4188_08385 PF00625 Guanylate kinase E4188_08395 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4188_08410 PF00892 EamA-like transporter family E4188_08430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_08430 PF03466 LysR substrate binding domain E4188_08435 PF00579 tRNA synthetases class I (W and Y) E4188_08440 PF00582 Universal stress protein family E4188_08445 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4188_08445 PF07055 Enoyl reductase FAD binding domain E4188_08445 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4188_08450 PF05230 MASE2 domain E4188_08450 PF00990 Diguanylate cyclase, GGDEF domain E4188_08455 PF00210 Ferritin-like domain E4188_08465 PF07690 Major Facilitator Superfamily E4188_08470 PF01810 LysE type translocator E4188_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08475 PF07694 5TMR of 5TMR-LYT E4188_08475 PF06580 Histidine kinase E4188_08480 PF04397 LytTr DNA-binding domain E4188_08480 PF00072 Response regulator receiver domain E4188_08485 PF07690 Major Facilitator Superfamily E4188_08490 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E4188_08490 PF02222 ATP-grasp domain E4188_08495 PF00731 AIR carboxylase E4188_08500 PF00593 TonB dependent receptor E4188_08500 PF07715 TonB-dependent Receptor Plug Domain E4188_08505 PF01177 Asp/Glu/Hydantoin racemase E4188_08535 PF13607 Succinyl-CoA ligase like flavodoxin domain E4188_08535 PF13380 CoA binding domain E4188_08535 PF00583 Acetyltransferase (GNAT) family E4188_08545 PF03466 LysR substrate binding domain E4188_08545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_08550 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E4188_08550 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E4188_08555 PF00342 Phosphoglucose isomerase E4188_08565 PF00924 Mechanosensitive ion channel E4188_08565 PF05552 Conserved TM helix E4188_08570 PF00440 Bacterial regulatory proteins, tetR family E4188_08580 PF00692 dUTPase E4188_08585 PF01609 Transposase DDE domain E4188_08585 PF05598 Transposase domain (DUF772) E4188_08615 PF00816 H-NS histone family E4188_08620 PF02321 Outer membrane efflux protein E4188_08625 PF01695 IstB-like ATP binding protein E4188_08630 PF00665 Integrase core domain E4188_08640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_08650 PF00486 Transcriptional regulatory protein, C terminal E4188_08650 PF00072 Response regulator receiver domain E4188_08655 PF00512 His Kinase A (phospho-acceptor) domain E4188_08655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08655 PF00672 HAMP domain E4188_08675 PF02371 Transposase IS116/IS110/IS902 family E4188_08675 PF01548 Transposase E4188_08695 PF05275 Copper resistance protein B precursor (CopB) E4188_08700 PF07732 Multicopper oxidase E4188_08700 PF00394 Multicopper oxidase E4188_08700 PF07731 Multicopper oxidase E4188_08715 PF05598 Transposase domain (DUF772) E4188_08715 PF01609 Transposase DDE domain E4188_08730 PF02441 Flavoprotein E4188_08730 PF04127 DNA / pantothenate metabolism flavoprotein E4188_08735 PF04002 RadC-like JAB domain E4188_08740 PF00830 Ribosomal L28 family E4188_08745 PF00471 Ribosomal protein L33 E4188_08755 PF06827 Zinc finger found in FPG and IleRS E4188_08755 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E4188_08755 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E4188_08760 PF04393 Protein of unknown function (DUF535) E4188_08765 PF01467 Cytidylyltransferase-like E4188_08770 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4188_08775 PF00535 Glycosyl transferase family 2 E4188_08780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E4188_08785 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E4188_08795 PF08340 Domain of unknown function (DUF1732) E4188_08795 PF03755 YicC-like family, N-terminal region E4188_08800 PF01138 3' exoribonuclease family, domain 1 E4188_08800 PF03725 3' exoribonuclease family, domain 2 E4188_08805 PF00156 Phosphoribosyl transferase domain E4188_08810 PF00403 Heavy-metal-associated domain E4188_08815 PF00376 MerR family regulatory protein E4188_08815 PF09278 MerR, DNA binding E4188_08820 PF00360 Phytochrome region E4188_08820 PF01590 GAF domain E4188_08820 PF00990 Diguanylate cyclase, GGDEF domain E4188_08820 PF00563 EAL domain E4188_08825 PF06288 Protein of unknown function (DUF1040) E4188_08830 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase E4188_08830 PF13746 4Fe-4S dicluster domain E4188_08830 PF12801 4Fe-4S binding domain E4188_08835 PF01636 Phosphotransferase enzyme family E4188_08840 PF01323 DSBA-like thioredoxin domain E4188_08845 PF00528 Binding-protein-dependent transport system inner membrane component E4188_08850 PF00005 ABC transporter E4188_08860 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E4188_08860 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E4188_08865 PF00857 Isochorismatase family E4188_08875 PF04463 Protein of unknown function (DUF523) E4188_08880 PF01553 Acyltransferase E4188_08885 PF01553 Acyltransferase E4188_08890 PF13335 Magnesium chelatase, subunit ChlI C-terminal E4188_08890 PF01078 Magnesium chelatase, subunit ChlI E4188_08900 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4188_08900 PF00205 Thiamine pyrophosphate enzyme, central domain E4188_08900 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4188_08910 PF01063 Amino-transferase class IV E4188_08915 PF00920 Dehydratase family E4188_08920 PF00585 C-terminal regulatory domain of Threonine dehydratase E4188_08920 PF00291 Pyridoxal-phosphate dependent enzyme E4188_08940 PF00691 OmpA family E4188_08940 PF01389 OmpA-like transmembrane domain E4188_08945 PF00270 DEAD/DEAH box helicase E4188_08945 PF00271 Helicase conserved C-terminal domain E4188_08945 PF17764 3′ DNA-binding domain (3′BD) E4188_08945 PF18074 Primosomal protein N C-terminal domain E4188_08945 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E4188_08950 PF01197 Ribosomal protein L31 E4188_08955 PF11066 Protein of unknown function (DUF2867) E4188_08955 PF13460 NAD(P)H-binding E4188_08960 PF03949 Malic enzyme, NAD binding domain E4188_08960 PF00390 Malic enzyme, N-terminal domain E4188_08970 PF00512 His Kinase A (phospho-acceptor) domain E4188_08970 PF00672 HAMP domain E4188_08970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_08975 PF00486 Transcriptional regulatory protein, C terminal E4188_08975 PF00072 Response regulator receiver domain E4188_08980 PF05958 tRNA (Uracil-5-)-methyltransferase E4188_08995 PF00128 Alpha amylase, catalytic domain E4188_08995 PF02903 Alpha amylase, N-terminal ig-like domain E4188_09010 PF00012 Hsp70 protein E4188_09015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4188_09015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4188_09020 PF05981 CreA protein E4188_09035 PF01258 Prokaryotic dksA/traR C4-type zinc finger E4188_09040 PF00120 Glutamine synthetase, catalytic domain E4188_09045 PF00202 Aminotransferase class-III E4188_09050 PF13416 Bacterial extracellular solute-binding protein E4188_09055 PF13416 Bacterial extracellular solute-binding protein E4188_09060 PF08402 TOBE domain E4188_09060 PF00005 ABC transporter E4188_09065 PF00528 Binding-protein-dependent transport system inner membrane component E4188_09070 PF00528 Binding-protein-dependent transport system inner membrane component E4188_09075 PF03475 3-alpha domain E4188_09075 PF03473 MOSC domain E4188_09095 PF03061 Thioesterase superfamily E4188_09100 PF00570 HRDC domain E4188_09100 PF00270 DEAD/DEAH box helicase E4188_09100 PF00271 Helicase conserved C-terminal domain E4188_09100 PF16124 RecQ zinc-binding E4188_09100 PF09382 RQC domain E4188_09105 PF00034 Cytochrome c E4188_09110 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E4188_09120 PF02592 Putative vitamin uptake transporter E4188_09125 PF03737 Aldolase/RraA E4188_09130 PF01769 Divalent cation transporter E4188_09130 PF00571 CBS domain E4188_09130 PF03448 MgtE intracellular N domain E4188_09135 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E4188_09135 PF14824 Sirohaem biosynthesis protein central E4188_09135 PF10414 Sirohaem synthase dimerisation region E4188_09140 PF01226 Formate/nitrite transporter E4188_09150 PF13806 Rieske-like [2Fe-2S] domain E4188_09155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E4188_09155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E4188_09155 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_09155 PF04324 BFD-like [2Fe-2S] binding domain E4188_09155 PF18267 Rubredoxin NAD+ reductase C-terminal domain E4188_09170 PF00005 ABC transporter E4188_09175 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_09185 PF03466 LysR substrate binding domain E4188_09185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_09190 PF07690 Major Facilitator Superfamily E4188_09195 PF07724 AAA domain (Cdc48 subfamily) E4188_09195 PF10431 C-terminal, D2-small domain, of ClpB protein E4188_09195 PF00004 ATPase family associated with various cellular activities (AAA) E4188_09200 PF00227 Proteasome subunit E4188_09210 PF03485 Arginyl tRNA synthetase N terminal domain E4188_09210 PF05746 DALR anticodon binding domain E4188_09210 PF00750 tRNA synthetases class I (R) E4188_09220 PF04545 Sigma-70, region 4 E4188_09220 PF04542 Sigma-70 region 2 E4188_09225 PF12973 ChrR Cupin-like domain E4188_09230 PF02673 Bacitracin resistance protein BacA E4188_09235 PF00248 Aldo/keto reductase family E4188_09240 PF01263 Aldose 1-epimerase E4188_09245 PF00288 GHMP kinases N terminal domain E4188_09245 PF08544 GHMP kinases C terminal E4188_09245 PF10509 Galactokinase galactose-binding signature E4188_09250 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E4188_09250 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E4188_09255 PF16363 GDP-mannose 4,6 dehydratase E4188_09260 PF00356 Bacterial regulatory proteins, lacI family E4188_09265 PF02837 Glycosyl hydrolases family 2, sugar binding domain E4188_09265 PF02836 Glycosyl hydrolases family 2, TIM barrel domain E4188_09265 PF00703 Glycosyl hydrolases family 2 E4188_09265 PF02929 Beta galactosidase small chain E4188_09265 PF16353 Domain of unknown function(DUF4981) E4188_09270 PF13407 Periplasmic binding protein domain E4188_09275 PF00005 ABC transporter E4188_09280 PF02653 Branched-chain amino acid transport system / permease component E4188_09285 PF02743 Cache domain E4188_09285 PF00672 HAMP domain E4188_09285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_09300 PF00696 Amino acid kinase family E4188_09305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4188_09305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4188_09310 PF03606 C4-dicarboxylate anaerobic carrier E4188_09315 PF01316 Arginine repressor, DNA binding domain E4188_09315 PF02863 Arginine repressor, C-terminal domain E4188_09320 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E4188_09320 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E4188_09325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E4188_09325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E4188_09350 PF02743 Cache domain E4188_09350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_09350 PF00672 HAMP domain E4188_09355 PF08212 Lipocalin-like domain E4188_09360 PF12833 Helix-turn-helix domain E4188_09360 PF06719 AraC-type transcriptional regulator N-terminus E4188_09365 PF00465 Iron-containing alcohol dehydrogenase E4188_09370 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4188_09370 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E4188_09370 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4188_09375 PF02233 NAD(P) transhydrogenase beta subunit E4188_09380 PF03313 Serine dehydratase alpha chain E4188_09385 PF00375 Sodium:dicarboxylate symporter family E4188_09390 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_09390 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_09395 PF13525 Outer membrane lipoprotein E4188_09400 PF01479 S4 domain E4188_09400 PF00849 RNA pseudouridylate synthase E4188_09410 PF00004 ATPase family associated with various cellular activities (AAA) E4188_09410 PF02861 Clp amino terminal domain, pathogenicity island component E4188_09410 PF17871 AAA lid domain E4188_09410 PF07724 AAA domain (Cdc48 subfamily) E4188_09410 PF10431 C-terminal, D2-small domain, of ClpB protein E4188_09415 PF03590 Aspartate-ammonia ligase E4188_09420 PF01037 Lrp/AsnC ligand binding domain E4188_09430 PF10063 Uncharacterized integral membrane protein (DUF2301) E4188_09435 PF00478 IMP dehydrogenase / GMP reductase domain E4188_09435 PF00571 CBS domain E4188_09455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_09455 PF00512 His Kinase A (phospho-acceptor) domain E4188_09465 PF00072 Response regulator receiver domain E4188_09465 PF00158 Sigma-54 interaction domain E4188_09470 PF06496 Protein of unknown function (DUF1097) E4188_09480 PF00174 Oxidoreductase molybdopterin binding domain E4188_09485 PF01794 Ferric reductase like transmembrane component E4188_09500 PF00072 Response regulator receiver domain E4188_09500 PF00486 Transcriptional regulatory protein, C terminal E4188_09505 PF08918 PhoQ Sensor E4188_09505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_09515 PF00384 Molybdopterin oxidoreductase E4188_09515 PF01568 Molydopterin dinucleotide binding domain E4188_09515 PF18364 Molybdopterin oxidoreductase N-terminal domain E4188_09520 PF03264 NapC/NirT cytochrome c family, N-terminal region E4188_09525 PF01751 Toprim domain E4188_09525 PF01131 DNA topoisomerase E4188_09530 PF02386 Cation transport protein E4188_09535 PF02080 TrkA-C domain E4188_09535 PF02254 TrkA-N domain E4188_09540 PF01565 FAD binding domain E4188_09540 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E4188_09545 PF02237 Biotin protein ligase C terminal domain E4188_09545 PF08279 HTH domain E4188_09545 PF03099 Biotin/lipoate A/B protein ligase family E4188_09550 PF00485 Phosphoribulokinase / Uridine kinase family E4188_09565 PF03143 Elongation factor Tu C-terminal domain E4188_09565 PF00009 Elongation factor Tu GTP binding domain E4188_09565 PF03144 Elongation factor Tu domain 2 E4188_09575 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E4188_09580 PF02357 Transcription termination factor nusG E4188_09580 PF00467 KOW motif E4188_09585 PF00298 Ribosomal protein L11, RNA binding domain E4188_09585 PF03946 Ribosomal protein L11, N-terminal domain E4188_09590 PF00687 Ribosomal protein L1p/L10e family E4188_09595 PF00466 Ribosomal protein L10 E4188_09600 PF00542 Ribosomal protein L7/L12 C-terminal domain E4188_09600 PF16320 Ribosomal protein L7/L12 dimerisation domain E4188_09605 PF04560 RNA polymerase Rpb2, domain 7 E4188_09605 PF00562 RNA polymerase Rpb2, domain 6 E4188_09605 PF10385 RNA polymerase beta subunit external 1 domain E4188_09605 PF04565 RNA polymerase Rpb2, domain 3 E4188_09605 PF04561 RNA polymerase Rpb2, domain 2 E4188_09605 PF04563 RNA polymerase beta subunit E4188_09610 PF00623 RNA polymerase Rpb1, domain 2 E4188_09610 PF04983 RNA polymerase Rpb1, domain 3 E4188_09610 PF05000 RNA polymerase Rpb1, domain 4 E4188_09610 PF04998 RNA polymerase Rpb1, domain 5 E4188_09610 PF04997 RNA polymerase Rpb1, domain 1 E4188_09615 PF08348 YheO-like PAS domain E4188_09615 PF13309 HTH domain E4188_09620 PF01042 Endoribonuclease L-PSP E4188_09625 PF02635 DsrE/DsrF-like family E4188_09630 PF02635 DsrE/DsrF-like family E4188_09635 PF04077 DsrH like protein E4188_09640 PF00164 Ribosomal protein S12/S23 E4188_09645 PF00177 Ribosomal protein S7p/S5e E4188_09650 PF00679 Elongation factor G C-terminus E4188_09650 PF14492 Elongation Factor G, domain II E4188_09650 PF03764 Elongation factor G, domain IV E4188_09650 PF03144 Elongation factor Tu domain 2 E4188_09650 PF00009 Elongation factor Tu GTP binding domain E4188_09655 PF03144 Elongation factor Tu domain 2 E4188_09655 PF00009 Elongation factor Tu GTP binding domain E4188_09655 PF03143 Elongation factor Tu C-terminal domain E4188_09695 PF03079 ARD/ARD' family E4188_09700 PF00860 Permease family E4188_09705 PF02733 Dak1 domain E4188_09710 PF02734 DAK2 domain E4188_09715 PF00391 PEP-utilising enzyme, mobile domain E4188_09715 PF05524 PEP-utilising enzyme, N-terminal E4188_09715 PF03610 PTS system fructose IIA component E4188_09715 PF00381 PTS HPr component phosphorylation site E4188_09720 PF00465 Iron-containing alcohol dehydrogenase E4188_09725 PF02954 Bacterial regulatory protein, Fis family E4188_09725 PF00989 PAS fold E4188_09725 PF00158 Sigma-54 interaction domain E4188_09730 PF00106 short chain dehydrogenase E4188_09735 PF01594 AI-2E family transporter E4188_09740 PF01569 PAP2 superfamily E4188_09760 PF06628 Catalase-related immune-responsive E4188_09760 PF00199 Catalase E4188_09765 PF00583 Acetyltransferase (GNAT) family E4188_09785 PF00990 Diguanylate cyclase, GGDEF domain E4188_09795 PF00005 ABC transporter E4188_09795 PF08402 TOBE domain E4188_09805 PF00528 Binding-protein-dependent transport system inner membrane component E4188_09820 PF00392 Bacterial regulatory proteins, gntR family E4188_09820 PF07702 UTRA domain E4188_09830 PF03466 LysR substrate binding domain E4188_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_09840 PF02678 Pirin E4188_09840 PF17954 Quercetinase C-terminal cupin domain E4188_09845 PF07681 DoxX E4188_09850 PF17946 RecC C-terminal domain E4188_09855 PF00580 UvrD/REP helicase N-terminal domain E4188_09855 PF13361 UvrD-like helicase C-terminal domain E4188_09855 PF12705 PD-(D/E)XK nuclease superfamily E4188_09860 PF13538 UvrD-like helicase C-terminal domain E4188_09880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_09890 PF00909 Ammonium Transporter Family E4188_09895 PF00543 Nitrogen regulatory protein P-II E4188_09900 PF08448 PAS fold E4188_09900 PF00990 Diguanylate cyclase, GGDEF domain E4188_09910 PF00672 HAMP domain E4188_09910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_09920 PF00072 Response regulator receiver domain E4188_09920 PF00486 Transcriptional regulatory protein, C terminal E4188_09925 PF00512 His Kinase A (phospho-acceptor) domain E4188_09925 PF00672 HAMP domain E4188_09925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_09930 PF00313 'Cold-shock' DNA-binding domain E4188_09960 PF01381 Helix-turn-helix E4188_09975 PF02909 Tetracyclin repressor-like, C-terminal domain E4188_09975 PF00440 Bacterial regulatory proteins, tetR family E4188_09980 PF07690 Major Facilitator Superfamily E4188_09995 PF14490 Helix-hairpin-helix containing domain E4188_09995 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain E4188_09995 PF13538 UvrD-like helicase C-terminal domain E4188_10030 PF00436 Single-strand binding protein family E4188_10035 PF00196 Bacterial regulatory proteins, luxR family E4188_10040 PF17755 UvrA DNA-binding domain E4188_10040 PF17760 UvrA interaction domain E4188_10040 PF00005 ABC transporter E4188_10045 PF03922 OmpW family E4188_10050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_10050 PF00672 HAMP domain E4188_10050 PF12729 Four helix bundle sensory module for signal transduction E4188_10065 PF02219 Methylenetetrahydrofolate reductase E4188_10075 PF00128 Alpha amylase, catalytic domain E4188_10075 PF16657 Maltogenic Amylase, C-terminal domain E4188_10075 PF02903 Alpha amylase, N-terminal ig-like domain E4188_10095 PF00106 short chain dehydrogenase E4188_10110 PF00465 Iron-containing alcohol dehydrogenase E4188_10120 PF01053 Cys/Met metabolism PLP-dependent enzyme E4188_10130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_10130 PF12793 Sugar transport-related sRNA regulator N-term E4188_10150 PF00561 alpha/beta hydrolase fold E4188_10160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E4188_10160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E4188_10165 PF02698 DUF218 domain E4188_10170 PF01752 Collagenase E4188_10170 PF08453 Peptidase family M9 N-terminal E4188_10175 PF00501 AMP-binding enzyme E4188_10180 PF13378 Enolase C-terminal domain-like E4188_10185 PF00378 Enoyl-CoA hydratase/isomerase E4188_10190 PF12697 Alpha/beta hydrolase family E4188_10195 PF16582 Middle domain of thiamine pyrophosphate E4188_10195 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4188_10195 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4188_10200 PF00425 chorismate binding enzyme E4188_10205 PF01040 UbiA prenyltransferase family E4188_10230 PF00270 DEAD/DEAH box helicase E4188_10230 PF00271 Helicase conserved C-terminal domain E4188_10230 PF03880 DbpA RNA binding domain E4188_10235 PF07670 Nucleoside recognition E4188_10235 PF01773 Na+ dependent nucleoside transporter N-terminus E4188_10235 PF07662 Na+ dependent nucleoside transporter C-terminus E4188_10265 PF02384 N-6 DNA Methylase E4188_10270 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E4188_10275 PF01544 CorA-like Mg2+ transporter protein E4188_10295 PF05068 Mannitol repressor E4188_10300 PF08125 Mannitol dehydrogenase C-terminal domain E4188_10300 PF01232 Mannitol dehydrogenase Rossmann domain E4188_10305 PF02378 Phosphotransferase system, EIIC E4188_10305 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4188_10305 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_10310 PF00773 RNB domain E4188_10310 PF08206 Ribonuclease B OB domain E4188_10310 PF17876 Cold shock domain E4188_10315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_10315 PF03466 LysR substrate binding domain E4188_10320 PF00765 Autoinducer synthase E4188_10325 PF00196 Bacterial regulatory proteins, luxR family E4188_10325 PF03472 Autoinducer binding domain E4188_10330 PF01810 LysE type translocator E4188_10335 PF00149 Calcineurin-like phosphoesterase E4188_10335 PF02872 5'-nucleotidase, C-terminal domain E4188_10340 PF03279 Bacterial lipid A biosynthesis acyltransferase E4188_10345 PF01467 Cytidylyltransferase-like E4188_10345 PF00294 pfkB family carbohydrate kinase E4188_10350 PF02321 Outer membrane efflux protein E4188_10355 PF00293 NUDIX domain E4188_10360 PF06853 Protein of unknown function (DUF1249) E4188_10365 PF00149 Calcineurin-like phosphoesterase E4188_10370 PF05728 Uncharacterised protein family (UPF0227) E4188_10375 PF00293 NUDIX domain E4188_10385 PF00204 DNA gyrase B E4188_10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_10385 PF01751 Toprim domain E4188_10385 PF00986 DNA gyrase B subunit, carboxyl terminus E4188_10390 PF00521 DNA gyrase/topoisomerase IV, subunit A E4188_10390 PF03989 DNA gyrase C-terminal domain, beta-propeller E4188_10420 PF03466 LysR substrate binding domain E4188_10420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_10455 PF00226 DnaJ domain E4188_10455 PF01556 DnaJ C terminal domain E4188_10455 PF00684 DnaJ central domain E4188_10465 PF00578 AhpC/TSA family E4188_10485 PF01553 Acyltransferase E4188_10490 PF04012 PspA/IM30 family E4188_10505 PF01541 GIY-YIG catalytic domain E4188_10510 PF00892 EamA-like transporter family E4188_10515 PF03167 Uracil DNA glycosylase superfamily E4188_10525 PF03466 LysR substrate binding domain E4188_10525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_10530 PF00950 ABC 3 transport family E4188_10535 PF00005 ABC transporter E4188_10540 PF01297 Zinc-uptake complex component A periplasmic E4188_10560 PF01551 Peptidase family M23 E4188_10560 PF08525 Opacity-associated protein A N-terminal motif E4188_10560 PF01476 LysM domain E4188_10565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4188_10570 PF04222 Protein of unknown function (DUF416) E4188_10585 PF02028 BCCT, betaine/carnitine/choline family transporter E4188_10590 PF05190 MutS family domain IV E4188_10590 PF05188 MutS domain II E4188_10590 PF05192 MutS domain III E4188_10590 PF01624 MutS domain I E4188_10590 PF00488 MutS domain V E4188_10600 PF02464 Competence-damaged protein E4188_10605 PF00154 recA bacterial DNA recombination protein E4188_10610 PF02631 RecX family E4188_10615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4188_10615 PF01411 tRNA synthetases class II (A) E4188_10615 PF02272 DHHA1 domain E4188_10620 PF00696 Amino acid kinase family E4188_10620 PF01842 ACT domain E4188_10620 PF13840 ACT domain E4188_10625 PF02599 Global regulator protein family E4188_10660 PF00768 D-alanyl-D-alanine carboxypeptidase E4188_10665 PF09335 SNARE associated Golgi protein E4188_10670 PF00571 CBS domain E4188_10670 PF03471 Transporter associated domain E4188_10670 PF01595 Cyclin M transmembrane N-terminal domain E4188_10675 PF13006 Insertion element 4 transposase N-terminal E4188_10675 PF01609 Transposase DDE domain E4188_10680 PF00133 tRNA synthetases class I (I, L, M and V) E4188_10680 PF08264 Anticodon-binding domain of tRNA E4188_10680 PF10458 Valyl tRNA synthetase tRNA binding arm E4188_10685 PF04364 DNA polymerase III chi subunit, HolC E4188_10690 PF02789 Cytosol aminopeptidase family, N-terminal domain E4188_10690 PF00883 Cytosol aminopeptidase family, catalytic domain E4188_10695 PF03739 Lipopolysaccharide export system permease LptF/LptG E4188_10700 PF03739 Lipopolysaccharide export system permease LptF/LptG E4188_10720 PF00909 Ammonium Transporter Family E4188_10725 PF05958 tRNA (Uracil-5-)-methyltransferase E4188_10725 PF01938 TRAM domain E4188_10745 PF01026 TatD related DNase E4188_10750 PF01773 Na+ dependent nucleoside transporter N-terminus E4188_10750 PF07662 Na+ dependent nucleoside transporter C-terminus E4188_10750 PF07670 Nucleoside recognition E4188_10760 PF01791 DeoC/LacD family aldolase E4188_10765 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E4188_10765 PF02885 Glycosyl transferase family, helical bundle domain E4188_10765 PF00591 Glycosyl transferase family, a/b domain E4188_10770 PF01676 Metalloenzyme superfamily E4188_10775 PF01048 Phosphorylase superfamily E4188_10785 PF11737 Protein of unknown function (DUF3300) E4188_10795 PF18429 Domain of unknown function (DUF5609) E4188_10810 PF18073 Rubredoxin metal binding domain E4188_10815 PF07238 PilZ domain E4188_10820 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ E4188_10825 PF00216 Bacterial DNA-binding protein E4188_10840 PF01207 Dihydrouridine synthase (Dus) E4188_10845 PF01475 Ferric uptake regulator family E4188_10860 PF05525 Branched-chain amino acid transport protein E4188_10865 PF05175 Methyltransferase small domain E4188_10870 PF00270 DEAD/DEAH box helicase E4188_10870 PF00271 Helicase conserved C-terminal domain E4188_10875 PF03883 Peroxide stress protein YaaA E4188_10885 PF00437 Type II/IV secretion system protein E4188_10890 PF01168 Alanine racemase, N-terminal domain E4188_10895 PF14748 Pyrroline-5-carboxylate reductase dimerisation E4188_10895 PF03807 NADP oxidoreductase coenzyme F420-dependent E4188_10900 PF02325 YGGT family E4188_10905 PF02594 Uncharacterised ACR, YggU family COG1872 E4188_10925 PF06062 Uncharacterised protein family (UPF0231) E4188_10930 PF05651 Putative sugar diacid recognition E4188_10930 PF13556 PucR C-terminal helix-turn-helix domain E4188_10930 PF17853 GGDEF-like domain E4188_10935 PF02447 GntP family permease E4188_10940 PF02595 Glycerate kinase family E4188_10950 PF00255 Glutathione peroxidase E4188_10955 PF03466 LysR substrate binding domain E4188_10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_10960 PF01773 Na+ dependent nucleoside transporter N-terminus E4188_10960 PF07662 Na+ dependent nucleoside transporter C-terminus E4188_10960 PF07670 Nucleoside recognition E4188_10965 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4188_10965 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4188_10970 PF00472 RF-1 domain E4188_10975 PF00543 Nitrogen regulatory protein P-II E4188_10990 PF00005 ABC transporter E4188_10990 PF08402 TOBE domain E4188_10995 PF04261 Dyp-type peroxidase family E4188_11000 PF02863 Arginine repressor, C-terminal domain E4188_11000 PF01316 Arginine repressor, DNA binding domain E4188_11005 PF00005 ABC transporter E4188_11010 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_11015 PF00528 Binding-protein-dependent transport system inner membrane component E4188_11020 PF00528 Binding-protein-dependent transport system inner membrane component E4188_11025 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E4188_11025 PF00056 lactate/malate dehydrogenase, NAD binding domain E4188_11035 PF00970 Oxidoreductase FAD-binding domain E4188_11035 PF00175 Oxidoreductase NAD-binding domain E4188_11035 PF00042 Globin E4188_11040 PF02082 Transcriptional regulator E4188_11045 PF00571 CBS domain E4188_11045 PF03471 Transporter associated domain E4188_11045 PF01595 Cyclin M transmembrane N-terminal domain E4188_11050 PF01578 Cytochrome C assembly protein E4188_11055 PF02978 Signal peptide binding domain E4188_11055 PF02881 SRP54-type protein, helical bundle domain E4188_11055 PF00448 SRP54-type protein, GTPase domain E4188_11060 PF00886 Ribosomal protein S16 E4188_11065 PF05239 PRC-barrel domain E4188_11065 PF01782 RimM N-terminal domain E4188_11070 PF01746 tRNA (Guanine-1)-methyltransferase E4188_11075 PF01245 Ribosomal protein L19 E4188_11085 PF02976 DNA mismatch repair enzyme MutH E4188_11090 PF00293 NUDIX domain E4188_11095 PF00391 PEP-utilising enzyme, mobile domain E4188_11095 PF02896 PEP-utilising enzyme, TIM barrel domain E4188_11095 PF01590 GAF domain E4188_11095 PF05524 PEP-utilising enzyme, N-terminal E4188_11100 PF01790 Prolipoprotein diacylglyceryl transferase E4188_11110 PF00589 Phage integrase family E4188_11110 PF02899 Phage integrase, N-terminal SAM-like domain E4188_11135 PF00303 Thymidylate synthase E4188_11140 PF01609 Transposase DDE domain E4188_11140 PF05598 Transposase domain (DUF772) E4188_11145 PF00892 EamA-like transporter family E4188_11150 PF08019 Phosphoethanolamine transferase EptA/EptB E4188_11150 PF00884 Sulfatase E4188_11155 PF00884 Sulfatase E4188_11155 PF08019 Phosphoethanolamine transferase EptA/EptB E4188_11160 PF01219 Prokaryotic diacylglycerol kinase E4188_11165 PF09722 Protein of unknown function (DUF2384) E4188_11180 PF00816 H-NS histone family E4188_11200 PF13808 DDE_Tnp_1-associated E4188_11200 PF01609 Transposase DDE domain E4188_11230 PF00665 Integrase core domain E4188_11235 PF01695 IstB-like ATP binding protein E4188_11250 PF06965 Na+/H+ antiporter 1 E4188_11260 PF03466 LysR substrate binding domain E4188_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_11265 PF01022 Bacterial regulatory protein, arsR family E4188_11270 PF01649 Ribosomal protein S20 E4188_11275 PF03023 Lipid II flippase MurJ E4188_11280 PF06574 FAD synthetase E4188_11280 PF01687 Riboflavin kinase E4188_11285 PF08264 Anticodon-binding domain of tRNA E4188_11285 PF00133 tRNA synthetases class I (I, L, M and V) E4188_11285 PF06827 Zinc finger found in FPG and IleRS E4188_11290 PF01252 Signal peptidase (SPase) II E4188_11295 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_11300 PF02401 LytB protein E4188_11330 PF02540 NAD synthase E4188_11330 PF00795 Carbon-nitrogen hydrolase E4188_11335 PF00543 Nitrogen regulatory protein P-II E4188_11345 PF02664 S-Ribosylhomocysteinase (LuxS) E4188_11350 PF00990 Diguanylate cyclase, GGDEF domain E4188_11355 PF17876 Cold shock domain E4188_11355 PF08206 Ribonuclease B OB domain E4188_11355 PF00773 RNB domain E4188_11355 PF00575 S1 RNA binding domain E4188_11355 PF08461 Ribonuclease R winged-helix domain E4188_11360 PF00588 SpoU rRNA Methylase family E4188_11360 PF08032 RNA 2'-O ribose methyltransferase substrate binding E4188_11370 PF13673 Acetyltransferase (GNAT) domain E4188_11385 PF01566 Natural resistance-associated macrophage protein E4188_11390 PF01250 Ribosomal protein S6 E4188_11395 PF01084 Ribosomal protein S18 E4188_11400 PF03948 Ribosomal protein L9, C-terminal domain E4188_11400 PF01281 Ribosomal protein L9, N-terminal domain E4188_11405 PF00970 Oxidoreductase FAD-binding domain E4188_11405 PF00175 Oxidoreductase NAD-binding domain E4188_11430 PF08240 Alcohol dehydrogenase GroES-like domain E4188_11430 PF00107 Zinc-binding dehydrogenase E4188_11435 PF09335 SNARE associated Golgi protein E4188_11440 PF05193 Peptidase M16 inactive domain E4188_11440 PF00675 Insulinase (Peptidase family M16) E4188_11445 PF04262 Glutamate-cysteine ligase E4188_11450 PF03605 Anaerobic c4-dicarboxylate membrane transporter E4188_11455 PF00206 Lyase E4188_11455 PF10415 Fumarase C C-terminus E4188_11460 PF04186 FxsA cytoplasmic membrane protein E4188_11465 PF01554 MatE E4188_11470 PF00166 Chaperonin 10 Kd subunit E4188_11475 PF00118 TCP-1/cpn60 chaperonin family E4188_11485 PF00990 Diguanylate cyclase, GGDEF domain E4188_11485 PF00563 EAL domain E4188_11485 PF03707 Bacterial signalling protein N terminal repeat E4188_11495 PF00849 RNA pseudouridylate synthase E4188_11500 PF00176 SNF2 family N-terminal domain E4188_11500 PF18339 RapA N-terminal Tudor like domain 1 E4188_11500 PF18337 RapA N-terminal Tudor like domain E4188_11500 PF12137 RNA polymerase recycling family C-terminal E4188_11500 PF00271 Helicase conserved C-terminal domain E4188_11540 PF00528 Binding-protein-dependent transport system inner membrane component E4188_11545 PF00528 Binding-protein-dependent transport system inner membrane component E4188_11550 PF12857 TOBE-like domain E4188_11550 PF00005 ABC transporter E4188_11555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_11555 PF03466 LysR substrate binding domain E4188_11565 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E4188_11565 PF18416 N-acetylglucosamine binding protein domain 2 E4188_11570 PF17200 Single Cache domain 2 E4188_11570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_11570 PF00672 HAMP domain E4188_11595 PF11230 Protein of unknown function (DUF3029) E4188_11600 PF04055 Radical SAM superfamily E4188_11610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_11610 PF03466 LysR substrate binding domain E4188_11615 PF00155 Aminotransferase class I and II E4188_11630 PF06564 Cellulose biosynthesis protein BcsQ E4188_11635 PF07238 PilZ domain E4188_11635 PF00535 Glycosyl transferase family 2 E4188_11640 PF03170 Bacterial cellulose synthase subunit E4188_11645 PF01270 Glycosyl hydrolases family 8 E4188_11650 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) E4188_11655 PF02583 Metal-sensitive transcriptional repressor E4188_11670 PF03714 Bacterial pullanase-associated domain E4188_11670 PF11852 Domain of unknown function (DUF3372) E4188_11670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4188_11670 PF18494 Pullulanase Ins domain E4188_11670 PF17967 Pullulanase N2 domain E4188_11675 PF00403 Heavy-metal-associated domain E4188_11680 PF08534 Redoxin E4188_11685 PF00270 DEAD/DEAH box helicase E4188_11685 PF00271 Helicase conserved C-terminal domain E4188_11700 PF03372 Endonuclease/Exonuclease/phosphatase family E4188_11705 PF08447 PAS fold E4188_11705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_11715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_11725 PF10952 Protein of unknown function (DUF2753) E4188_11730 PF00378 Enoyl-CoA hydratase/isomerase E4188_11745 PF00106 short chain dehydrogenase E4188_11750 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4188_11750 PF04073 Aminoacyl-tRNA editing domain E4188_11750 PF03129 Anticodon binding domain E4188_11755 PF07499 RuvA, C-terminal domain E4188_11755 PF01330 RuvA N terminal domain E4188_11760 PF05496 Holliday junction DNA helicase RuvB P-loop domain E4188_11760 PF17864 RuvB AAA lid domain E4188_11760 PF05491 RuvB C-terminal winged helix domain E4188_11770 PF01654 Cytochrome bd terminal oxidase subunit I E4188_11775 PF02322 Cytochrome bd terminal oxidase subunit II E4188_11780 PF08173 Membrane bound YbgT-like protein E4188_11785 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) E4188_11790 PF03061 Thioesterase superfamily E4188_11795 PF01618 MotA/TolQ/ExbB proton channel family E4188_11800 PF02472 Biopolymer transport protein ExbD/TolR E4188_11810 PF07676 WD40-like Beta Propeller Repeat E4188_11810 PF04052 TolB amino-terminal domain E4188_11815 PF00691 OmpA family E4188_11820 PF16331 TolA binding protein trimerisation E4188_11820 PF13174 Tetratricopeptide repeat E4188_11895 PF02445 Quinolinate synthetase A protein E4188_11900 PF01263 Aldose 1-epimerase E4188_11905 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4188_11905 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4188_11910 PF02446 4-alpha-glucanotransferase E4188_11915 PF02806 Alpha amylase, C-terminal all-beta domain E4188_11915 PF00128 Alpha amylase, catalytic domain E4188_11915 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4188_11920 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E4188_11920 PF00128 Alpha amylase, catalytic domain E4188_11925 PF01641 SelR domain E4188_11935 PF00293 NUDIX domain E4188_11940 PF00107 Zinc-binding dehydrogenase E4188_11940 PF16884 N-terminal domain of oxidoreductase E4188_11945 PF01047 MarR family E4188_11960 PF01037 Lrp/AsnC ligand binding domain E4188_11970 PF07690 Major Facilitator Superfamily E4188_11990 PF00209 Sodium:neurotransmitter symporter family E4188_11995 PF00209 Sodium:neurotransmitter symporter family E4188_12010 PF00392 Bacterial regulatory proteins, gntR family E4188_12010 PF00155 Aminotransferase class I and II E4188_12025 PF01177 Asp/Glu/Hydantoin racemase E4188_12035 PF00501 AMP-binding enzyme E4188_12045 PF00583 Acetyltransferase (GNAT) family E4188_12055 PF12592 Protein of unknown function (DUF3763) E4188_12055 PF07728 AAA domain (dynein-related subfamily) E4188_12055 PF17868 AAA lid domain E4188_12060 PF05762 VWA domain containing CoxE-like protein E4188_12065 PF13188 PAS domain E4188_12065 PF03707 Bacterial signalling protein N terminal repeat E4188_12065 PF00563 EAL domain E4188_12065 PF00990 Diguanylate cyclase, GGDEF domain E4188_12070 PF00990 Diguanylate cyclase, GGDEF domain E4188_12070 PF00072 Response regulator receiver domain E4188_12075 PF00009 Elongation factor Tu GTP binding domain E4188_12075 PF03144 Elongation factor Tu domain 2 E4188_12075 PF16658 Class II release factor RF3, C-terminal domain E4188_12080 PF00583 Acetyltransferase (GNAT) family E4188_12085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4188_12100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_12100 PF03466 LysR substrate binding domain E4188_12105 PF04371 Porphyromonas-type peptidyl-arginine deiminase E4188_12110 PF01425 Amidase E4188_12120 PF01609 Transposase DDE domain E4188_12120 PF05598 Transposase domain (DUF772) E4188_12140 PF00270 DEAD/DEAH box helicase E4188_12140 PF00271 Helicase conserved C-terminal domain E4188_12145 PF00990 Diguanylate cyclase, GGDEF domain E4188_12155 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase E4188_12170 PF00445 Ribonuclease T2 family E4188_12180 PF03060 Nitronate monooxygenase E4188_12220 PF01695 IstB-like ATP binding protein E4188_12225 PF00665 Integrase core domain E4188_12240 PF02562 PhoH-like protein E4188_12240 PF13638 PIN domain E4188_12245 PF00005 ABC transporter E4188_12250 PF00528 Binding-protein-dependent transport system inner membrane component E4188_12270 PF00694 Aconitase C-terminal domain E4188_12275 PF00330 Aconitase family (aconitate hydratase) E4188_12280 PF00180 Isocitrate/isopropylmalate dehydrogenase E4188_12285 PF08502 LeuA allosteric (dimerisation) domain E4188_12285 PF00682 HMGL-like E4188_12295 PF01569 PAP2 superfamily E4188_12300 PF03033 Glycosyltransferase family 28 N-terminal domain E4188_12300 PF04101 Glycosyltransferase family 28 C-terminal domain E4188_12310 PF00205 Thiamine pyrophosphate enzyme, central domain E4188_12310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E4188_12310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4188_12315 PF10369 Small subunit of acetolactate synthase E4188_12320 PF01515 Phosphate acetyl/butaryl transferase E4188_12320 PF07085 DRTGG domain E4188_12325 PF00871 Acetokinase family E4188_12330 PF04217 Protein of unknown function, DUF412 E4188_12335 PF03887 YfbU domain E4188_12340 PF00578 AhpC/TSA family E4188_12345 PF01842 ACT domain E4188_12350 PF00701 Dihydrodipicolinate synthetase family E4188_12355 PF06804 NlpB/DapX lipoprotein E4188_12360 PF01259 SAICAR synthetase E4188_12370 PF03466 LysR substrate binding domain E4188_12370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_12395 PF18415 Histidine kinase receptor ArcB trans-membrane domain E4188_12395 PF00989 PAS fold E4188_12395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_12395 PF00512 His Kinase A (phospho-acceptor) domain E4188_12395 PF01627 Hpt domain E4188_12395 PF00072 Response regulator receiver domain E4188_12400 PF13286 Phosphohydrolase-associated domain E4188_12400 PF01966 HD domain E4188_12435 PF03707 Bacterial signalling protein N terminal repeat E4188_12435 PF00990 Diguanylate cyclase, GGDEF domain E4188_12435 PF00563 EAL domain E4188_12440 PF00672 HAMP domain E4188_12440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_12445 PF02357 Transcription termination factor nusG E4188_12450 PF03180 NLPA lipoprotein E4188_12455 PF00528 Binding-protein-dependent transport system inner membrane component E4188_12460 PF09383 NIL domain E4188_12460 PF00005 ABC transporter E4188_12470 PF00480 ROK family E4188_12475 PF08331 Domain of unknown function (DUF1730) E4188_12480 PF03853 YjeF-related protein N-terminus E4188_12480 PF01256 Carbohydrate kinase E4188_12485 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E4188_12490 PF01520 N-acetylmuramoyl-L-alanine amidase E4188_12495 PF01119 DNA mismatch repair protein, C-terminal domain E4188_12495 PF08676 MutL C terminal dimerisation domain E4188_12505 PF17209 Hfq protein E4188_12510 PF01926 50S ribosome-binding GTPase E4188_12510 PF16360 GTP-binding GTPase Middle Region E4188_12510 PF13167 GTP-binding GTPase N-terminal E4188_12515 PF12221 Bacterial membrane protein N terminal E4188_12515 PF01145 SPFH domain / Band 7 family E4188_12520 PF01145 SPFH domain / Band 7 family E4188_12525 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) E4188_12530 PF00348 Polyprenyl synthetase E4188_12535 PF00829 Ribosomal prokaryotic L21 protein E4188_12540 PF01016 Ribosomal L27 protein E4188_12545 PF01926 50S ribosome-binding GTPase E4188_12545 PF01018 GTP1/OBG E4188_12560 PF00296 Luciferase-like monooxygenase E4188_12570 PF00149 Calcineurin-like phosphoesterase E4188_12575 PF04379 ApaG domain E4188_12580 PF00398 Ribosomal RNA adenine dimethylase E4188_12585 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E4188_12590 PF00639 PPIC-type PPIASE domain E4188_12590 PF09312 SurA N-terminal domain E4188_12595 PF04453 LPS transport system D E4188_12595 PF03968 OstA-like protein E4188_12600 PF01636 Phosphotransferase enzyme family E4188_12605 PF00483 Nucleotidyl transferase E4188_12610 PF00226 DnaJ domain E4188_12610 PF05099 Tellurite resistance protein TerB E4188_12620 PF00860 Permease family E4188_12630 PF12848 ABC transporter E4188_12630 PF00005 ABC transporter E4188_12635 PF01464 Transglycosylase SLT domain E4188_12640 PF00535 Glycosyl transferase family 2 E4188_12650 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E4188_12655 PF01370 NAD dependent epimerase/dehydratase family E4188_12660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E4188_12660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E4188_12660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E4188_12670 PF00005 ABC transporter E4188_12675 PF01032 FecCD transport family E4188_12685 PF06228 Haem utilisation ChuX/HutX E4188_12690 PF01243 Pyridoxamine 5'-phosphate oxidase E4188_12710 PF00593 TonB dependent receptor E4188_12710 PF07715 TonB-dependent Receptor Plug Domain E4188_12715 PF12832 MFS_1 like family E4188_12720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_12720 PF00512 His Kinase A (phospho-acceptor) domain E4188_12725 PF08329 Chitinase A, N-terminal domain E4188_12725 PF00704 Glycosyl hydrolases family 18 E4188_12735 PF17945 Beta/Gamma crystallin E4188_12735 PF12561 ToxR activated gene A lipoprotein domain E4188_12740 PF08241 Methyltransferase domain E4188_12745 PF13545 Crp-like helix-turn-helix domain E4188_12745 PF00027 Cyclic nucleotide-binding domain E4188_12750 PF02566 OsmC-like protein E4188_12765 PF00485 Phosphoribulokinase / Uridine kinase family E4188_12770 PF06794 Uncharacterised protein family (UPF0270) E4188_12780 PF00561 alpha/beta hydrolase fold E4188_12785 PF00072 Response regulator receiver domain E4188_12785 PF01584 CheW-like domain E4188_12795 PF09526 Probable metal-binding protein (DUF2387) E4188_12800 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_12805 PF04102 SlyX E4188_12815 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4188_12815 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_12820 PF02954 Bacterial regulatory protein, Fis family E4188_12820 PF00158 Sigma-54 interaction domain E4188_12820 PF00072 Response regulator receiver domain E4188_12840 PF02872 5'-nucleotidase, C-terminal domain E4188_12840 PF00149 Calcineurin-like phosphoesterase E4188_12850 PF03796 DnaB-like helicase C terminal domain E4188_12850 PF00772 DnaB-like helicase N terminal domain E4188_12855 PF03796 DnaB-like helicase C terminal domain E4188_12855 PF00772 DnaB-like helicase N terminal domain E4188_12860 PF01168 Alanine racemase, N-terminal domain E4188_12860 PF00842 Alanine racemase, C-terminal domain E4188_12865 PF01619 Proline dehydrogenase E4188_12865 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E4188_12865 PF00171 Aldehyde dehydrogenase family E4188_12865 PF14850 DNA-binding domain of Proline dehydrogenase E4188_12875 PF00206 Lyase E4188_12875 PF10415 Fumarase C C-terminus E4188_12880 PF03575 Peptidase family S51 E4188_12885 PF00072 Response regulator receiver domain E4188_12885 PF00196 Bacterial regulatory proteins, luxR family E4188_12890 PF00989 PAS fold E4188_12890 PF00512 His Kinase A (phospho-acceptor) domain E4188_12890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_12895 PF13247 4Fe-4S dicluster domain E4188_12900 PF03916 Polysulphide reductase, NrfD E4188_12905 PF01568 Molydopterin dinucleotide binding domain E4188_12905 PF00384 Molybdopterin oxidoreductase E4188_12905 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4188_12915 PF00990 Diguanylate cyclase, GGDEF domain E4188_12915 PF01590 GAF domain E4188_12915 PF00563 EAL domain E4188_12915 PF00989 PAS fold E4188_12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_12945 PF03466 LysR substrate binding domain E4188_12950 PF01810 LysE type translocator E4188_12960 PF01136 Peptidase family U32 E4188_12960 PF12392 Collagenase E4188_12970 PF06906 Protein of unknown function (DUF1272) E4188_12980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E4188_12980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E4188_12990 PF02074 Carboxypeptidase Taq (M32) metallopeptidase E4188_13015 PF00106 short chain dehydrogenase E4188_13020 PF03573 outer membrane porin, OprD family E4188_13025 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_13035 PF02447 GntP family permease E4188_13040 PF01370 NAD dependent epimerase/dehydratase family E4188_13045 PF01261 Xylose isomerase-like TIM barrel E4188_13050 PF00596 Class II Aldolase and Adducin N-terminal domain E4188_13055 PF07005 Sugar-binding N-terminal domain E4188_13055 PF17042 Nucleotide-binding C-terminal domain E4188_13060 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4188_13060 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4188_13065 PF00455 DeoR C terminal sensor domain E4188_13065 PF08220 DeoR-like helix-turn-helix domain E4188_13075 PF07995 Glucose / Sorbosone dehydrogenase E4188_13085 PF03976 Polyphosphate kinase 2 (PPK2) E4188_13090 PF00356 Bacterial regulatory proteins, lacI family E4188_13110 PF00528 Binding-protein-dependent transport system inner membrane component E4188_13115 PF00528 Binding-protein-dependent transport system inner membrane component E4188_13120 PF17912 MalK OB fold domain E4188_13120 PF00005 ABC transporter E4188_13125 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain E4188_13125 PF04616 Glycosyl hydrolases family 43 E4188_13130 PF13592 Winged helix-turn helix E4188_13130 PF13358 DDE superfamily endonuclease E4188_13140 PF02264 LamB porin E4188_13145 PF01609 Transposase DDE domain E4188_13145 PF13808 DDE_Tnp_1-associated E4188_13150 PF02264 LamB porin E4188_13175 PF00800 Prephenate dehydratase E4188_13175 PF01817 Chorismate mutase type II E4188_13200 PF08349 Protein of unknown function (DUF1722) E4188_13205 PF13411 MerR HTH family regulatory protein E4188_13210 PF00875 DNA photolyase E4188_13210 PF03441 FAD binding domain of DNA photolyase E4188_13220 PF00106 short chain dehydrogenase E4188_13260 PF00210 Ferritin-like domain E4188_13265 PF03063 Prismane/CO dehydrogenase family E4188_13270 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_13270 PF00175 Oxidoreductase NAD-binding domain E4188_13270 PF00970 Oxidoreductase FAD-binding domain E4188_13275 PF01370 NAD dependent epimerase/dehydratase family E4188_13305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E4188_13305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E4188_13315 PF01758 Sodium Bile acid symporter family E4188_13320 PF03960 ArsC family E4188_13325 PF04542 Sigma-70 region 2 E4188_13325 PF04545 Sigma-70, region 4 E4188_13350 PF00916 Sulfate permease family E4188_13350 PF01740 STAS domain E4188_13355 PF03472 Autoinducer binding domain E4188_13355 PF00196 Bacterial regulatory proteins, luxR family E4188_13360 PF05638 Type VI secretion system effector, Hcp E4188_13370 PF04717 Type VI secretion system, phage-baseplate injector E4188_13385 PF05598 Transposase domain (DUF772) E4188_13385 PF01609 Transposase DDE domain E4188_13390 PF13592 Winged helix-turn helix E4188_13390 PF13358 DDE superfamily endonuclease E4188_13400 PF01965 DJ-1/PfpI family E4188_13405 PF08546 Ketopantoate reductase PanE/ApbA C terminal E4188_13405 PF02558 Ketopantoate reductase PanE/ApbA E4188_13410 PF04461 Protein of unknown function (DUF520) E4188_13415 PF03502 Nucleoside-specific channel-forming protein, Tsx E4188_13420 PF07690 Major Facilitator Superfamily E4188_13430 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4188_13440 PF05175 Methyltransferase small domain E4188_13445 PF01722 BolA-like protein E4188_13450 PF11973 NQRA C-terminal domain E4188_13450 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) E4188_13455 PF03116 NQR2, RnfD, RnfE family E4188_13460 PF04205 FMN-binding domain E4188_13465 PF02508 Rnf-Nqr subunit, membrane protein E4188_13470 PF02508 Rnf-Nqr subunit, membrane protein E4188_13475 PF00970 Oxidoreductase FAD-binding domain E4188_13475 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_13475 PF00175 Oxidoreductase NAD-binding domain E4188_13480 PF02424 ApbE family E4188_13495 PF11799 impB/mucB/samB family C-terminal domain E4188_13495 PF11798 IMS family HHH motif E4188_13495 PF00817 impB/mucB/samB family E4188_13500 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_13500 PF00672 HAMP domain E4188_13505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_13505 PF03466 LysR substrate binding domain E4188_13515 PF04241 Protein of unknown function (DUF423) E4188_13520 PF18125 RlmM ferredoxin-like domain E4188_13520 PF01728 FtsJ-like methyltransferase E4188_13530 PF18324 Hypothetical protein TT1725 E4188_13530 PF00180 Isocitrate/isopropylmalate dehydrogenase E4188_13535 PF01367 5'-3' exonuclease, C-terminal SAM fold E4188_13535 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E4188_13540 PF11892 Domain of unknown function (DUF3412) E4188_13540 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E4188_13540 PF03641 Possible lysine decarboxylase E4188_13545 PF00990 Diguanylate cyclase, GGDEF domain E4188_13555 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E4188_13555 PF14489 QueF-like protein E4188_13560 PF07348 Syd protein (SUKH-2) E4188_13565 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) E4188_13590 PF04287 tRNA pseudouridine synthase C E4188_13595 PF00849 RNA pseudouridylate synthase E4188_13600 PF00258 Flavodoxin E4188_13605 PF02264 LamB porin E4188_13610 PF07148 Maltose operon periplasmic protein precursor (MalM) E4188_13615 PF00367 phosphotransferase system, EIIB E4188_13615 PF02378 Phosphotransferase system, EIIC E4188_13620 PF11944 Protein of unknown function (DUF3461) E4188_13625 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E4188_13625 PF14602 Hexapeptide repeat of succinyl-transferase E4188_13625 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_13630 PF08335 GlnD PII-uridylyltransferase E4188_13630 PF01966 HD domain E4188_13630 PF01842 ACT domain E4188_13630 PF01909 Nucleotidyltransferase domain E4188_13635 PF00557 Metallopeptidase family M24 E4188_13640 PF00318 Ribosomal protein S2 E4188_13645 PF00889 Elongation factor TS E4188_13650 PF00696 Amino acid kinase family E4188_13655 PF01765 Ribosome recycling factor E4188_13660 PF01255 Putative undecaprenyl diphosphate synthase E4188_13670 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E4188_13670 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E4188_13670 PF13288 DXP reductoisomerase C-terminal domain E4188_13675 PF02163 Peptidase family M50 E4188_13675 PF17820 PDZ domain E4188_13680 PF01103 Surface antigen E4188_13680 PF07244 Surface antigen variable number repeat E4188_13685 PF03938 Outer membrane protein (OmpH-like) E4188_13690 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E4188_13690 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_13695 PF07977 FabA-like domain E4188_13700 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E4188_13700 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_13705 PF02684 Lipid-A-disaccharide synthetase E4188_13710 PF01351 Ribonuclease HII E4188_13715 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4188_13715 PF02811 PHP domain E4188_13715 PF01336 OB-fold nucleic acid binding domain E4188_13715 PF14579 Helix-hairpin-helix motif E4188_13715 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4188_13720 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E4188_13730 PF03466 LysR substrate binding domain E4188_13730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_13740 PF13520 Amino acid permease E4188_13745 PF13302 Acetyltransferase (GNAT) domain E4188_13760 PF01431 Peptidase family M13 E4188_13760 PF05649 Peptidase family M13 E4188_13770 PF00990 Diguanylate cyclase, GGDEF domain E4188_13775 PF02080 TrkA-C domain E4188_13775 PF02254 TrkA-N domain E4188_13775 PF00999 Sodium/hydrogen exchanger family E4188_13800 PF00072 Response regulator receiver domain E4188_13800 PF00196 Bacterial regulatory proteins, luxR family E4188_13810 PF00128 Alpha amylase, catalytic domain E4188_13825 PF00535 Glycosyl transferase family 2 E4188_13840 PF03734 L,D-transpeptidase catalytic domain E4188_13840 PF01471 Putative peptidoglycan binding domain E4188_13845 PF05951 Bacterial protein of unknown function (DUF882) E4188_13855 PF03458 UPF0126 domain E4188_13865 PF06470 SMC proteins Flexible Hinge Domain E4188_13865 PF02463 RecF/RecN/SMC N terminal domain E4188_13870 PF04354 ZipA, C-terminal FtsZ-binding domain E4188_13875 PF00533 BRCA1 C Terminus (BRCT) domain E4188_13875 PF01653 NAD-dependent DNA ligase adenylation domain E4188_13875 PF03120 NAD-dependent DNA ligase OB-fold domain E4188_13875 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E4188_13875 PF12826 Helix-hairpin-helix motif E4188_13885 PF03477 ATP cone domain E4188_13885 PF13597 Anaerobic ribonucleoside-triphosphate reductase E4188_13895 PF01679 Proteolipid membrane potential modulator E4188_13915 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_13915 PF00529 HlyD membrane-fusion protein of T1SS E4188_13920 PF01047 MarR family E4188_13925 PF03390 2-hydroxycarboxylate transporter family E4188_13930 PF03949 Malic enzyme, NAD binding domain E4188_13930 PF00390 Malic enzyme, N-terminal domain E4188_13935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_13935 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E4188_13935 PF17203 Single cache domain 3 E4188_13935 PF00989 PAS fold E4188_13940 PF00072 Response regulator receiver domain E4188_13940 PF12431 Transcriptional regulator E4188_13945 PF00892 EamA-like transporter family E4188_13955 PF00171 Aldehyde dehydrogenase family E4188_13960 PF01590 GAF domain E4188_13960 PF02954 Bacterial regulatory protein, Fis family E4188_13960 PF00158 Sigma-54 interaction domain E4188_13965 PF17158 Membrane-associated sensor, integral membrane domain E4188_13965 PF00990 Diguanylate cyclase, GGDEF domain E4188_13970 PF01609 Transposase DDE domain E4188_13970 PF05598 Transposase domain (DUF772) E4188_13975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_13980 PF00486 Transcriptional regulatory protein, C terminal E4188_13980 PF00072 Response regulator receiver domain E4188_13985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_13985 PF11808 Phosphate regulon sensor protein PhoR E4188_13985 PF00512 His Kinase A (phospho-acceptor) domain E4188_13985 PF00989 PAS fold E4188_13990 PF12849 PBP superfamily domain E4188_13995 PF01435 Peptidase family M48 E4188_14005 PF00480 ROK family E4188_14010 PF03932 CutC family E4188_14015 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_14015 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4188_14020 PF00005 ABC transporter E4188_14035 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_14040 PF00528 Binding-protein-dependent transport system inner membrane component E4188_14045 PF00528 Binding-protein-dependent transport system inner membrane component E4188_14050 PF00005 ABC transporter E4188_14060 PF00293 NUDIX domain E4188_14065 PF08534 Redoxin E4188_14070 PF01699 Sodium/calcium exchanger protein E4188_14075 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4188_14075 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E4188_14080 PF01235 Sodium:alanine symporter family E4188_14090 PF00860 Permease family E4188_14095 PF00990 Diguanylate cyclase, GGDEF domain E4188_14095 PF00072 Response regulator receiver domain E4188_14100 PF10692 Protein of unknown function (DUF2498) E4188_14105 PF01554 MatE E4188_14110 PF12833 Helix-turn-helix domain E4188_14115 PF03949 Malic enzyme, NAD binding domain E4188_14115 PF00390 Malic enzyme, N-terminal domain E4188_14120 PF00691 OmpA family E4188_14120 PF01389 OmpA-like transmembrane domain E4188_14125 PF00691 OmpA family E4188_14125 PF01389 OmpA-like transmembrane domain E4188_14130 PF01389 OmpA-like transmembrane domain E4188_14130 PF00691 OmpA family E4188_14145 PF00209 Sodium:neurotransmitter symporter family E4188_14150 PF01734 Patatin-like phospholipase E4188_14155 PF00990 Diguanylate cyclase, GGDEF domain E4188_14155 PF05230 MASE2 domain E4188_14170 PF08497 Radical SAM N-terminal E4188_14170 PF04055 Radical SAM superfamily E4188_14170 PF11842 Domain of unknown function (DUF3362) E4188_14180 PF13808 DDE_Tnp_1-associated E4188_14180 PF01609 Transposase DDE domain E4188_14215 PF02384 N-6 DNA Methylase E4188_14230 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4188_14235 PF02075 Crossover junction endodeoxyribonuclease RuvC E4188_14240 PF00230 Major intrinsic protein E4188_14245 PF01464 Transglycosylase SLT domain E4188_14245 PF10145 Phage-related minor tail protein E4188_14245 PF01551 Peptidase family M23 E4188_14260 PF13396 Phospholipase_D-nuclease N-terminal E4188_14260 PF13091 PLD-like domain E4188_14270 PF00551 Formyl transferase E4188_14270 PF01842 ACT domain E4188_14275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E4188_14285 PF00085 Thioredoxin E4188_14290 PF01648 4'-phosphopantetheinyl transferase superfamily E4188_14295 PF00877 NlpC/P60 family E4188_14300 PF05971 RNA methyltransferase E4188_14305 PF01575 MaoC like domain E4188_14315 PF17969 L,D-transpeptidase C-terminal domain E4188_14315 PF03734 L,D-transpeptidase catalytic domain E4188_14315 PF01476 LysM domain E4188_14325 PF13592 Winged helix-turn helix E4188_14325 PF13358 DDE superfamily endonuclease E4188_14330 PF01418 Helix-turn-helix domain, rpiR family E4188_14330 PF01380 SIS domain E4188_14335 PF12801 4Fe-4S binding domain E4188_14335 PF04205 FMN-binding domain E4188_14340 PF18764 Nitrous oxide reductase propeller repeat E4188_14340 PF18793 Nitrous oxide reductase propeller repeat 2 E4188_14340 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E4188_14345 PF05048 Periplasmic copper-binding protein (NosD) E4188_14350 PF00005 ABC transporter E4188_14355 PF12679 ABC-2 family transporter protein E4188_14360 PF05573 NosL E4188_14365 PF02416 mttA/Hcf106 family E4188_14370 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E4188_14390 PF07690 Major Facilitator Superfamily E4188_14400 PF02129 X-Pro dipeptidyl-peptidase (S15 family) E4188_14405 PF03466 LysR substrate binding domain E4188_14405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_14435 PF10725 Protein of unknown function (DUF2517) E4188_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_14440 PF00512 His Kinase A (phospho-acceptor) domain E4188_14440 PF00072 Response regulator receiver domain E4188_14440 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_14440 PF01627 Hpt domain E4188_14445 PF00665 Integrase core domain E4188_14450 PF01695 IstB-like ATP binding protein E4188_14460 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E4188_14465 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E4188_14465 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_14470 PF02690 Na+/Pi-cotransporter E4188_14480 PF13520 Amino acid permease E4188_14490 PF00324 Amino acid permease E4188_14495 PF00202 Aminotransferase class-III E4188_14500 PF00171 Aldehyde dehydrogenase family E4188_14505 PF07883 Cupin domain E4188_14505 PF01381 Helix-turn-helix E4188_14510 PF01266 FAD dependent oxidoreductase E4188_14525 PF04381 Putative exonuclease, RdgC E4188_14530 PF13673 Acetyltransferase (GNAT) domain E4188_14535 PF12320 Type 5 capsule protein repressor C-terminal domain E4188_14535 PF00149 Calcineurin-like phosphoesterase E4188_14545 PF01292 Prokaryotic cytochrome b561 E4188_14550 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4188_14555 PF05524 PEP-utilising enzyme, N-terminal E4188_14555 PF02896 PEP-utilising enzyme, TIM barrel domain E4188_14555 PF00391 PEP-utilising enzyme, mobile domain E4188_14560 PF00381 PTS HPr component phosphorylation site E4188_14565 PF00291 Pyridoxal-phosphate dependent enzyme E4188_14570 PF01434 Peptidase family M41 E4188_14570 PF17862 AAA+ lid domain E4188_14570 PF00004 ATPase family associated with various cellular activities (AAA) E4188_14580 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4188_14580 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4188_14585 PF01980 tRNA-methyltransferase O E4188_14585 PF18389 TrmO C-terminal domain E4188_14605 PF00664 ABC transporter transmembrane region E4188_14605 PF00005 ABC transporter E4188_14610 PF00664 ABC transporter transmembrane region E4188_14610 PF00005 ABC transporter E4188_14625 PF00486 Transcriptional regulatory protein, C terminal E4188_14625 PF00072 Response regulator receiver domain E4188_14635 PF03737 Aldolase/RraA E4188_14650 PF01546 Peptidase family M20/M25/M40 E4188_14670 PF13508 Acetyltransferase (GNAT) domain E4188_14690 PF01668 SmpB protein E4188_14695 PF03364 Polyketide cyclase / dehydrase and lipid transport E4188_14710 PF13006 Insertion element 4 transposase N-terminal E4188_14710 PF01609 Transposase DDE domain E4188_14720 PF04355 SmpA / OmlA family E4188_14725 PF01048 Phosphorylase superfamily E4188_14730 PF00849 RNA pseudouridylate synthase E4188_14735 PF01156 Inosine-uridine preferring nucleoside hydrolase E4188_14750 PF07509 Protein of unknown function (DUF1523) E4188_14755 PF12729 Four helix bundle sensory module for signal transduction E4188_14755 PF00672 HAMP domain E4188_14755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_14760 PF01810 LysE type translocator E4188_14765 PF03471 Transporter associated domain E4188_14765 PF00999 Sodium/hydrogen exchanger family E4188_14765 PF02080 TrkA-C domain E4188_14775 PF03471 Transporter associated domain E4188_14775 PF02080 TrkA-C domain E4188_14775 PF00999 Sodium/hydrogen exchanger family E4188_14785 PF02557 D-alanyl-D-alanine carboxypeptidase E4188_14790 PF01546 Peptidase family M20/M25/M40 E4188_14790 PF07687 Peptidase dimerisation domain E4188_14795 PF03960 ArsC family E4188_14810 PF03605 Anaerobic c4-dicarboxylate membrane transporter E4188_14820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4188_14825 PF00106 short chain dehydrogenase E4188_14830 PF14765 Polyketide synthase dehydratase E4188_14830 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_14830 PF00698 Acyl transferase domain E4188_14830 PF08240 Alcohol dehydrogenase GroES-like domain E4188_14830 PF16197 Ketoacyl-synthetase C-terminal extension E4188_14830 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_14830 PF08659 KR domain E4188_14830 PF00550 Phosphopantetheine attachment site E4188_14835 PF00152 tRNA synthetases class II (D, K and N) E4188_14835 PF01336 OB-fold nucleic acid binding domain E4188_14850 PF00202 Aminotransferase class-III E4188_14855 PF04055 Radical SAM superfamily E4188_14855 PF06968 Biotin and Thiamin Synthesis associated domain E4188_14860 PF00155 Aminotransferase class I and II E4188_14865 PF08241 Methyltransferase domain E4188_14865 PF12697 Alpha/beta hydrolase family E4188_14875 PF01435 Peptidase family M48 E4188_14880 PF03476 MOSC N-terminal beta barrel domain E4188_14880 PF03473 MOSC domain E4188_14880 PF03476 MOSC N-terminal beta barrel domain E4188_14880 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_14880 PF03473 MOSC domain E4188_14880 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_14885 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_14885 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E4188_14885 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4188_14890 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E4188_14890 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E4188_14890 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E4188_14890 PF10371 Domain of unknown function E4188_14890 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E4188_14900 PF04325 Protein of unknown function (DUF465) E4188_14910 PF01554 MatE E4188_14930 PF00291 Pyridoxal-phosphate dependent enzyme E4188_14935 PF00465 Iron-containing alcohol dehydrogenase E4188_14945 PF17932 Tetracyclin repressor-like, C-terminal domain E4188_14945 PF00440 Bacterial regulatory proteins, tetR family E4188_14950 PF00171 Aldehyde dehydrogenase family E4188_14960 PF00877 NlpC/P60 family E4188_14965 PF03466 LysR substrate binding domain E4188_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_14985 PF08003 Protein of unknown function (DUF1698) E4188_14990 PF13649 Methyltransferase domain E4188_14995 PF01904 Protein of unknown function DUF72 E4188_15005 PF01336 OB-fold nucleic acid binding domain E4188_15005 PF00152 tRNA synthetases class II (D, K and N) E4188_15005 PF02938 GAD domain E4188_15010 PF01709 Transcriptional regulator E4188_15015 PF08019 Phosphoethanolamine transferase EptA/EptB E4188_15015 PF00884 Sulfatase E4188_15020 PF01047 MarR family E4188_15020 PF00480 ROK family E4188_15025 PF01979 Amidohydrolase family E4188_15030 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E4188_15035 PF02378 Phosphotransferase system, EIIC E4188_15035 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E4188_15035 PF00367 phosphotransferase system, EIIB E4188_15040 PF02838 Glycosyl hydrolase family 20, domain 2 E4188_15040 PF00728 Glycosyl hydrolase family 20, catalytic domain E4188_15040 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain E4188_15040 PF03173 Putative carbohydrate binding domain E4188_15045 PF00749 tRNA synthetases class I (E and Q), catalytic domain E4188_15045 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E4188_15050 PF01475 Ferric uptake regulator family E4188_15060 PF00258 Flavodoxin E4188_15065 PF01402 Ribbon-helix-helix protein, copG family E4188_15075 PF12697 Alpha/beta hydrolase family E4188_15080 PF03925 SeqA protein C-terminal domain E4188_15080 PF17206 SeqA protein N-terminal domain E4188_15085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E4188_15085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E4188_15085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E4188_15085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E4188_15095 PF01047 MarR family E4188_15100 PF13406 Transglycosylase SLT domain E4188_15105 PF01066 CDP-alcohol phosphatidyltransferase E4188_15110 PF00005 ABC transporter E4188_15120 PF13416 Bacterial extracellular solute-binding protein E4188_15125 PF00403 Heavy-metal-associated domain E4188_15125 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_15125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_15130 PF02627 Carboxymuconolactone decarboxylase family E4188_15150 PF01103 Surface antigen E4188_15150 PF17243 POTRA domain TamA domain 1 E4188_15150 PF07244 Surface antigen variable number repeat E4188_15155 PF04357 TamB, inner membrane protein subunit of TAM complex E4188_15175 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E4188_15180 PF00563 EAL domain E4188_15180 PF03707 Bacterial signalling protein N terminal repeat E4188_15180 PF00990 Diguanylate cyclase, GGDEF domain E4188_15185 PF14718 Soluble lytic murein transglycosylase L domain E4188_15185 PF01464 Transglycosylase SLT domain E4188_15190 PF00356 Bacterial regulatory proteins, lacI family E4188_15200 PF03061 Thioesterase superfamily E4188_15210 PF03372 Endonuclease/Exonuclease/phosphatase family E4188_15215 PF01464 Transglycosylase SLT domain E4188_15215 PF01476 LysM domain E4188_15220 PF00753 Metallo-beta-lactamase superfamily E4188_15220 PF16123 Hydroxyacylglutathione hydrolase C-terminus E4188_15225 PF08241 Methyltransferase domain E4188_15230 PF00075 RNase H E4188_15235 PF00929 Exonuclease E4188_15245 PF11849 Domain of unknown function (DUF3369) E4188_15250 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4188_15250 PF09317 Domain of unknown function (DUF1974) E4188_15250 PF02770 Acyl-CoA dehydrogenase, middle domain E4188_15250 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4188_15255 PF13580 SIS domain E4188_15260 PF13230 Glutamine amidotransferases class-II E4188_15270 PF01933 Uncharacterised protein family UPF0052 E4188_15280 PF00072 Response regulator receiver domain E4188_15280 PF00512 His Kinase A (phospho-acceptor) domain E4188_15280 PF17149 Periplasmic sensor domain found in signal transduction proteins E4188_15280 PF00672 HAMP domain E4188_15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_15280 PF01627 Hpt domain E4188_15295 PF00196 Bacterial regulatory proteins, luxR family E4188_15295 PF00072 Response regulator receiver domain E4188_15300 PF07730 Histidine kinase E4188_15300 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E4188_15300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_15300 PF00672 HAMP domain E4188_15305 PF04055 Radical SAM superfamily E4188_15305 PF06463 Molybdenum Cofactor Synthesis C E4188_15310 PF12838 4Fe-4S dicluster domain E4188_15310 PF13187 4Fe-4S dicluster domain E4188_15320 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4188_15320 PF00384 Molybdopterin oxidoreductase E4188_15320 PF01568 Molydopterin dinucleotide binding domain E4188_15320 PF10518 TAT (twin-arginine translocation) pathway signal sequence E4188_15325 PF12838 4Fe-4S dicluster domain E4188_15325 PF12800 4Fe-4S binding domain E4188_15330 PF12801 4Fe-4S binding domain E4188_15330 PF12837 4Fe-4S binding domain E4188_15335 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) E4188_15340 PF03264 NapC/NirT cytochrome c family, N-terminal region E4188_15345 PF00994 Probable molybdopterin binding domain E4188_15350 PF01967 MoaC family E4188_15355 PF02597 ThiS family E4188_15360 PF02391 MoaE protein E4188_15370 PF00528 Binding-protein-dependent transport system inner membrane component E4188_15375 PF00005 ABC transporter E4188_15375 PF03459 TOBE domain E4188_15380 PF00561 alpha/beta hydrolase fold E4188_15385 PF00899 ThiF family E4188_15390 PF03454 MoeA C-terminal region (domain IV) E4188_15390 PF03453 MoeA N-terminal region (domain I and II) E4188_15390 PF00994 Probable molybdopterin binding domain E4188_15395 PF01227 GTP cyclohydrolase I E4188_15400 PF17200 Single Cache domain 2 E4188_15400 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_15400 PF00672 HAMP domain E4188_15405 PF01268 Formate--tetrahydrofolate ligase E4188_15415 PF03466 LysR substrate binding domain E4188_15415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_15420 PF04264 YceI-like domain E4188_15430 PF05221 S-adenosyl-L-homocysteine hydrolase E4188_15430 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain E4188_15445 PF01546 Peptidase family M20/M25/M40 E4188_15445 PF07687 Peptidase dimerisation domain E4188_15460 PF17944 Arginine decarboxylase C-terminal helical extension E4188_15460 PF17810 Arginine decarboxylase helical bundle domain E4188_15460 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E4188_15475 PF00990 Diguanylate cyclase, GGDEF domain E4188_15475 PF00563 EAL domain E4188_15475 PF03707 Bacterial signalling protein N terminal repeat E4188_15480 PF00300 Histidine phosphatase superfamily (branch 1) E4188_15485 PF03852 DNA mismatch endonuclease Vsr E4188_15490 PF00145 C-5 cytosine-specific DNA methylase E4188_15495 PF01119 DNA mismatch repair protein, C-terminal domain E4188_15495 PF08676 MutL C terminal dimerisation domain E4188_15515 PF13808 DDE_Tnp_1-associated E4188_15515 PF01609 Transposase DDE domain E4188_15520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_15530 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E4188_15530 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E4188_15535 PF01479 S4 domain E4188_15535 PF00849 RNA pseudouridylate synthase E4188_15540 PF07690 Major Facilitator Superfamily E4188_15550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_15550 PF03466 LysR substrate binding domain E4188_15560 PF10689 Protein of unknown function (DUF2496) E4188_15575 PF00892 EamA-like transporter family E4188_15580 PF04391 Protein of unknown function (DUF533) E4188_15595 PF08281 Sigma-70, region 4 E4188_15595 PF04542 Sigma-70 region 2 E4188_15610 PF00392 Bacterial regulatory proteins, gntR family E4188_15610 PF00155 Aminotransferase class I and II E4188_15615 PF01654 Cytochrome bd terminal oxidase subunit I E4188_15620 PF02322 Cytochrome bd terminal oxidase subunit II E4188_15630 PF07690 Major Facilitator Superfamily E4188_15635 PF00248 Aldo/keto reductase family E4188_15655 PF03466 LysR substrate binding domain E4188_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_15660 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E4188_15660 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4188_15665 PF00230 Major intrinsic protein E4188_15670 PF07690 Major Facilitator Superfamily E4188_15675 PF08220 DeoR-like helix-turn-helix domain E4188_15675 PF00455 DeoR C terminal sensor domain E4188_15680 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E4188_15680 PF01266 FAD dependent oxidoreductase E4188_15685 PF03009 Glycerophosphoryl diester phosphodiesterase family E4188_15690 PF00793 DAHP synthetase I family E4188_15695 PF01817 Chorismate mutase type II E4188_15695 PF02153 Prephenate dehydrogenase E4188_15700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_15700 PF03466 LysR substrate binding domain E4188_15705 PF04219 Protein of unknown function, DUF E4188_15710 PF03974 Ecotin E4188_15730 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E4188_15730 PF00326 Prolyl oligopeptidase family E4188_15735 PF07715 TonB-dependent Receptor Plug Domain E4188_15735 PF00593 TonB dependent receptor E4188_15740 PF11893 Domain of unknown function (DUF3413) E4188_15740 PF00884 Sulfatase E4188_15745 PF07208 Protein of unknown function (DUF1414) E4188_15750 PF04245 37-kD nucleoid-associated bacterial protein E4188_15755 PF01547 Bacterial extracellular solute-binding protein E4188_15760 PF14785 Maltose transport system permease protein MalF P2 domain E4188_15760 PF00528 Binding-protein-dependent transport system inner membrane component E4188_15765 PF00528 Binding-protein-dependent transport system inner membrane component E4188_15770 PF08402 TOBE domain E4188_15770 PF00005 ABC transporter E4188_15775 PF03976 Polyphosphate kinase 2 (PPK2) E4188_15780 PF00561 alpha/beta hydrolase fold E4188_15790 PF01594 AI-2E family transporter E4188_15800 PF01435 Peptidase family M48 E4188_15800 PF13181 Tetratricopeptide repeat E4188_15805 PF00578 AhpC/TSA family E4188_15810 PF03960 ArsC family E4188_15820 PF01979 Amidohydrolase family E4188_15825 PF04336 Acyl carrier protein phosphodiesterase E4188_15835 PF01979 Amidohydrolase family E4188_15840 PF03956 Lysine exporter LysO E4188_15845 PF00005 ABC transporter E4188_15850 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_15855 PF00528 Binding-protein-dependent transport system inner membrane component E4188_15860 PF00528 Binding-protein-dependent transport system inner membrane component E4188_15870 PF04055 Radical SAM superfamily E4188_15875 PF00990 Diguanylate cyclase, GGDEF domain E4188_15875 PF00563 EAL domain E4188_15875 PF03707 Bacterial signalling protein N terminal repeat E4188_15880 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_15880 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_15900 PF07690 Major Facilitator Superfamily E4188_15910 PF12323 Helix-turn-helix domain E4188_15920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_15920 PF00529 HlyD membrane-fusion protein of T1SS E4188_15925 PF02321 Outer membrane efflux protein E4188_15940 PF17962 Bacterial macroglobulin domain 6 E4188_15940 PF07703 Alpha-2-macroglobulin bait region domain E4188_15940 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E4188_15940 PF07678 A-macroglobulin TED domain E4188_15940 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E4188_15940 PF01835 MG2 domain E4188_15940 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E4188_15940 PF00207 Alpha-2-macroglobulin family E4188_15940 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E4188_15945 PF06832 Penicillin-Binding Protein C-terminus Family E4188_15945 PF00912 Transglycosylase E4188_15945 PF00905 Penicillin binding protein transpeptidase domain E4188_15965 PF02926 THUMP domain E4188_15965 PF02568 Thiamine biosynthesis protein (ThiI) E4188_15975 PF03458 UPF0126 domain E4188_15980 PF07196 Flagellin hook IN motif E4188_15980 PF00700 Bacterial flagellin C-terminal helical region E4188_15980 PF00669 Bacterial flagellin N-terminal helical region E4188_15985 PF03646 FlaG protein E4188_15990 PF07196 Flagellin hook IN motif E4188_15990 PF02465 Flagellar hook-associated protein 2 N-terminus E4188_15990 PF07195 Flagellar hook-associated protein 2 C-terminus E4188_15995 PF02561 Flagellar protein FliS E4188_16020 PF01497 Periplasmic binding protein E4188_16030 PF01048 Phosphorylase superfamily E4188_16035 PF02535 ZIP Zinc transporter E4188_16045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_16050 PF00633 Helix-hairpin-helix motif E4188_16050 PF00730 HhH-GPD superfamily base excision DNA repair protein E4188_16050 PF10576 Iron-sulfur binding domain of endonuclease III E4188_16055 PF02508 Rnf-Nqr subunit, membrane protein E4188_16060 PF04205 FMN-binding domain E4188_16065 PF03116 NQR2, RnfD, RnfE family E4188_16070 PF13375 RnfC Barrel sandwich hybrid domain E4188_16070 PF10531 SLBB domain E4188_16070 PF12838 4Fe-4S dicluster domain E4188_16070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4188_16075 PF04060 Putative Fe-S cluster E4188_16080 PF02508 Rnf-Nqr subunit, membrane protein E4188_16095 PF13426 PAS domain E4188_16095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_16095 PF08447 PAS fold E4188_16105 PF07055 Enoyl reductase FAD binding domain E4188_16105 PF12241 Trans-2-enoyl-CoA reductase catalytic region E4188_16105 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E4188_16110 PF03606 C4-dicarboxylate anaerobic carrier E4188_16115 PF00155 Aminotransferase class I and II E4188_16125 PF00462 Glutaredoxin E4188_16130 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family E4188_16135 PF00271 Helicase conserved C-terminal domain E4188_16135 PF04851 Type III restriction enzyme, res subunit E4188_16140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_16140 PF00529 HlyD membrane-fusion protein of T1SS E4188_16145 PF11742 Protein of unknown function (DUF3302) E4188_16150 PF12794 Mechanosensitive ion channel inner membrane domain 1 E4188_16150 PF12795 Mechanosensitive ion channel porin domain E4188_16150 PF00924 Mechanosensitive ion channel E4188_16155 PF02554 Carbon starvation protein CstA E4188_16160 PF04397 LytTr DNA-binding domain E4188_16160 PF00072 Response regulator receiver domain E4188_16165 PF06580 Histidine kinase E4188_16165 PF07694 5TMR of 5TMR-LYT E4188_16170 PF11871 Domain of unknown function (DUF3391) E4188_16170 PF01966 HD domain E4188_16175 PF00171 Aldehyde dehydrogenase family E4188_16175 PF00465 Iron-containing alcohol dehydrogenase E4188_16180 PF01914 MarC family integral membrane protein E4188_16185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_16190 PF00528 Binding-protein-dependent transport system inner membrane component E4188_16195 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_16195 PF00528 Binding-protein-dependent transport system inner membrane component E4188_16200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_16200 PF00005 ABC transporter E4188_16205 PF00005 ABC transporter E4188_16205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_16210 PF03741 Integral membrane protein TerC family E4188_16215 PF00842 Alanine racemase, C-terminal domain E4188_16215 PF01168 Alanine racemase, N-terminal domain E4188_16225 PF00375 Sodium:dicarboxylate symporter family E4188_16240 PF01979 Amidohydrolase family E4188_16250 PF02743 Cache domain E4188_16250 PF00672 HAMP domain E4188_16250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_16255 PF01230 HIT domain E4188_16290 PF07549 SecD/SecF GG Motif E4188_16290 PF02355 Protein export membrane protein E4188_16290 PF13721 SecD export protein N-terminal TM region E4188_16295 PF07549 SecD/SecF GG Motif E4188_16295 PF02355 Protein export membrane protein E4188_16305 PF05661 Protein of unknown function (DUF808) E4188_16310 PF08439 Oligopeptidase F E4188_16310 PF01432 Peptidase family M3 E4188_16315 PF01432 Peptidase family M3 E4188_16315 PF08439 Oligopeptidase F E4188_16320 PF05728 Uncharacterised protein family (UPF0227) E4188_16325 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_16335 PF02371 Transposase IS116/IS110/IS902 family E4188_16335 PF01548 Transposase E4188_16340 PF01906 Putative heavy-metal-binding E4188_16345 PF02016 LD-carboxypeptidase N-terminal domain E4188_16345 PF17676 LD-carboxypeptidase C-terminal domain E4188_16350 PF00884 Sulfatase E4188_16360 PF01842 ACT domain E4188_16360 PF00696 Amino acid kinase family E4188_16370 PF00583 Acetyltransferase (GNAT) family E4188_16370 PF00696 Amino acid kinase family E4188_16375 PF01625 Peptide methionine sulfoxide reductase E4188_16390 PF04237 YjbR E4188_16400 PF03466 LysR substrate binding domain E4188_16400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_16405 PF02652 L-lactate permease E4188_16410 PF02754 Cysteine-rich domain E4188_16415 PF13183 4Fe-4S dicluster domain E4188_16415 PF11870 Domain of unknown function (DUF3390) E4188_16415 PF02589 LUD domain E4188_16420 PF02589 LUD domain E4188_16425 PF01565 FAD binding domain E4188_16425 PF02913 FAD linked oxidases, C-terminal domain E4188_16460 PF05598 Transposase domain (DUF772) E4188_16460 PF01609 Transposase DDE domain E4188_16480 PF00005 ABC transporter E4188_16490 PF03600 Citrate transporter E4188_16500 PF07690 Major Facilitator Superfamily E4188_16520 PF01593 Flavin containing amine oxidoreductase E4188_16525 PF03239 Iron permease FTR1 family E4188_16555 PF04168 A predicted alpha-helical domain with a conserved ER motif. E4188_16555 PF14403 Circularly permuted ATP-grasp type 2 E4188_16560 PF14403 Circularly permuted ATP-grasp type 2 E4188_16580 PF01740 STAS domain E4188_16580 PF00916 Sulfate permease family E4188_16595 PF01609 Transposase DDE domain E4188_16595 PF13808 DDE_Tnp_1-associated E4188_16605 PF05598 Transposase domain (DUF772) E4188_16605 PF01609 Transposase DDE domain E4188_16620 PF02627 Carboxymuconolactone decarboxylase family E4188_16630 PF00085 Thioredoxin E4188_16635 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4188_16640 PF01323 DSBA-like thioredoxin domain E4188_16650 PF02899 Phage integrase, N-terminal SAM-like domain E4188_16650 PF00589 Phage integrase family E4188_16655 PF05598 Transposase domain (DUF772) E4188_16655 PF01609 Transposase DDE domain E4188_16665 PF01609 Transposase DDE domain E4188_16665 PF05598 Transposase domain (DUF772) E4188_16670 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E4188_16670 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E4188_16675 PF13247 4Fe-4S dicluster domain E4188_16680 PF03916 Polysulphide reductase, NrfD E4188_16685 PF00374 Nickel-dependent hydrogenase E4188_16690 PF01750 Hydrogenase maturation protease E4188_16695 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE E4188_16700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_16705 PF00528 Binding-protein-dependent transport system inner membrane component E4188_16710 PF00528 Binding-protein-dependent transport system inner membrane component E4188_16710 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_16715 PF00005 ABC transporter E4188_16715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E4188_16720 PF00005 ABC transporter E4188_16725 PF02492 CobW/HypB/UreG, nucleotide-binding domain E4188_16730 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E4188_16735 PF02769 AIR synthase related protein, C-terminal domain E4188_16735 PF00586 AIR synthase related protein, N-terminal domain E4188_16740 PF01924 Hydrogenase formation hypA family E4188_16745 PF01455 HupF/HypC family E4188_16750 PF17788 HypF Kae1-like domain E4188_16750 PF07503 HypF finger E4188_16750 PF00708 Acylphosphatase E4188_16750 PF01300 Telomere recombination E4188_16760 PF02132 RecR protein E4188_16760 PF13662 Toprim domain E4188_16765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_16765 PF00183 Hsp90 protein E4188_16770 PF05191 Adenylate kinase, active site lid E4188_16775 PF00762 Ferrochelatase E4188_16785 PF00294 pfkB family carbohydrate kinase E4188_16790 PF00672 HAMP domain E4188_16790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_16790 PF17200 Single Cache domain 2 E4188_16805 PF03707 Bacterial signalling protein N terminal repeat E4188_16805 PF00990 Diguanylate cyclase, GGDEF domain E4188_16805 PF00563 EAL domain E4188_16810 PF00483 Nucleotidyl transferase E4188_16820 PF07273 Protein of unknown function (DUF1439) E4188_16825 PF00425 chorismate binding enzyme E4188_16830 PF13193 AMP-binding enzyme C-terminal domain E4188_16830 PF00501 AMP-binding enzyme E4188_16835 PF00550 Phosphopantetheine attachment site E4188_16835 PF00857 Isochorismatase family E4188_16840 PF00975 Thioesterase domain E4188_16840 PF00550 Phosphopantetheine attachment site E4188_16840 PF00501 AMP-binding enzyme E4188_16840 PF13193 AMP-binding enzyme C-terminal domain E4188_16840 PF00668 Condensation domain E4188_16850 PF13193 AMP-binding enzyme C-terminal domain E4188_16850 PF00501 AMP-binding enzyme E4188_16850 PF00550 Phosphopantetheine attachment site E4188_16850 PF00668 Condensation domain E4188_16850 PF07993 Male sterility protein E4188_16855 PF00975 Thioesterase domain E4188_16855 PF00501 AMP-binding enzyme E4188_16855 PF00550 Phosphopantetheine attachment site E4188_16855 PF00668 Condensation domain E4188_16855 PF13193 AMP-binding enzyme C-terminal domain E4188_16860 PF01497 Periplasmic binding protein E4188_16865 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E4188_16865 PF01648 4'-phosphopantetheinyl transferase superfamily E4188_16870 PF00005 ABC transporter E4188_16875 PF01032 FecCD transport family E4188_16880 PF01032 FecCD transport family E4188_16885 PF07715 TonB-dependent Receptor Plug Domain E4188_16885 PF00593 TonB dependent receptor E4188_16900 PF11143 Protein of unknown function (DUF2919) E4188_16905 PF01544 CorA-like Mg2+ transporter protein E4188_16920 PF01012 Electron transfer flavoprotein domain E4188_16925 PF01012 Electron transfer flavoprotein domain E4188_16925 PF00766 Electron transfer flavoprotein FAD-binding domain E4188_16930 PF00266 Aminotransferase class-V E4188_16935 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E4188_16940 PF00793 DAHP synthetase I family E4188_16945 PF03741 Integral membrane protein TerC family E4188_16955 PF08891 YfcL protein E4188_16960 PF00501 AMP-binding enzyme E4188_16965 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region E4188_16965 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E4188_16970 PF04172 LrgB-like family E4188_16975 PF03788 LrgA family E4188_16990 PF08411 Exonuclease C-terminal E4188_16990 PF00929 Exonuclease E4188_16995 PF13356 Arm DNA-binding domain E4188_16995 PF14659 Phage integrase, N-terminal SAM-like domain E4188_16995 PF00589 Phage integrase family E4188_17030 PF04245 37-kD nucleoid-associated bacterial protein E4188_17075 PF10549 ORF11CD3 domain E4188_17075 PF09669 Phage regulatory protein Rha (Phage_pRha) E4188_17090 PF05866 Endodeoxyribonuclease RusA E4188_17135 PF03354 Phage Terminase E4188_17240 PF00149 Calcineurin-like phosphoesterase E4188_17245 PF09924 Uncharacterised conserved protein (DUF2156) E4188_17245 PF03706 Lysylphosphatidylglycerol synthase TM region E4188_17255 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_17260 PF00795 Carbon-nitrogen hydrolase E4188_17265 PF00155 Aminotransferase class I and II E4188_17270 PF03466 LysR substrate binding domain E4188_17270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_17275 PF02610 L-arabinose isomerase E4188_17275 PF11762 L-arabinose isomerase C-terminal domain E4188_17280 PF00596 Class II Aldolase and Adducin N-terminal domain E4188_17285 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E4188_17290 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4188_17295 PF00005 ABC transporter E4188_17300 PF02653 Branched-chain amino acid transport system / permease component E4188_17305 PF02311 AraC-like ligand binding domain E4188_17305 PF12833 Helix-turn-helix domain E4188_17310 PF00444 Ribosomal protein L36 E4188_17315 PF01197 Ribosomal protein L31 E4188_17320 PF03812 2-keto-3-deoxygluconate permease E4188_17325 PF04074 YhcH/YjgK/YiaL E4188_17330 PF01081 KDPG and KHG aldolase E4188_17335 PF00294 pfkB family carbohydrate kinase E4188_17340 PF01614 Bacterial transcriptional regulator E4188_17340 PF09339 IclR helix-turn-helix domain E4188_17345 PF10688 Bacterial inner membrane protein E4188_17355 PF04962 KduI/IolB family E4188_17370 PF01863 Protein of unknown function DUF45 E4188_17385 PF03606 C4-dicarboxylate anaerobic carrier E4188_17395 PF01266 FAD dependent oxidoreductase E4188_17395 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E4188_17400 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_17400 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_17415 PF00285 Citrate synthase, C-terminal domain E4188_17420 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4188_17425 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E4188_17430 PF00890 FAD binding domain E4188_17430 PF02910 Fumarate reductase flavoprotein C-term E4188_17435 PF13085 2Fe-2S iron-sulfur cluster binding domain E4188_17440 PF16870 2-oxoglutarate dehydrogenase C-terminal E4188_17440 PF16078 2-oxoglutarate dehydrogenase N-terminus E4188_17440 PF02779 Transketolase, pyrimidine binding domain E4188_17440 PF00676 Dehydrogenase E1 component E4188_17445 PF02817 e3 binding domain E4188_17445 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4188_17445 PF00364 Biotin-requiring enzyme E4188_17450 PF08442 ATP-grasp domain E4188_17450 PF00549 CoA-ligase E4188_17455 PF00549 CoA-ligase E4188_17455 PF02629 CoA binding domain E4188_17460 PF01609 Transposase DDE domain E4188_17460 PF13006 Insertion element 4 transposase N-terminal E4188_17470 PF03692 Putative zinc- or iron-chelating domain E4188_17475 PF01228 Glycine radical E4188_17475 PF02901 Pyruvate formate lyase-like E4188_17480 PF01226 Formate/nitrite transporter E4188_17485 PF18381 YcaO cyclodehydratase C-terminal domain E4188_17485 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding E4188_17495 PF01609 Transposase DDE domain E4188_17495 PF13006 Insertion element 4 transposase N-terminal E4188_17500 PF00893 Small Multidrug Resistance protein E4188_17505 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4188_17505 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4188_17510 PF00313 'Cold-shock' DNA-binding domain E4188_17515 PF02617 ATP-dependent Clp protease adaptor protein ClpS E4188_17520 PF10431 C-terminal, D2-small domain, of ClpB protein E4188_17520 PF07724 AAA domain (Cdc48 subfamily) E4188_17520 PF17871 AAA lid domain E4188_17520 PF02861 Clp amino terminal domain, pathogenicity island component E4188_17520 PF00004 ATPase family associated with various cellular activities (AAA) E4188_17525 PF01176 Translation initiation factor 1A / IF-1 E4188_17530 PF04377 Arginine-tRNA-protein transferase, C terminus E4188_17530 PF04376 Arginine-tRNA-protein transferase, N terminus E4188_17535 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E4188_17540 PF05433 Glycine zipper 2TM domain E4188_17545 PF00990 Diguanylate cyclase, GGDEF domain E4188_17550 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_17555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E4188_17555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E4188_17560 PF01037 Lrp/AsnC ligand binding domain E4188_17565 PF01580 FtsK/SpoIIIE family E4188_17565 PF09397 Ftsk gamma domain E4188_17565 PF17854 FtsK alpha domain E4188_17565 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E4188_17570 PF03548 Outer membrane lipoprotein carrier protein LolA E4188_17575 PF00004 ATPase family associated with various cellular activities (AAA) E4188_17575 PF16193 AAA C-terminal domain E4188_17575 PF12002 MgsA AAA+ ATPase C terminal E4188_17580 PF02403 Seryl-tRNA synthetase N-terminal domain E4188_17580 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4188_17585 PF02674 Colicin V production protein E4188_17590 PF00156 Phosphoribosyl transferase domain E4188_17595 PF00232 Glycosyl hydrolase family 1 E4188_17600 PF02378 Phosphotransferase system, EIIC E4188_17600 PF00367 phosphotransferase system, EIIB E4188_17605 PF00356 Bacterial regulatory proteins, lacI family E4188_17610 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) E4188_17615 PF00005 ABC transporter E4188_17625 PF00528 Binding-protein-dependent transport system inner membrane component E4188_17625 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_17630 PF00528 Binding-protein-dependent transport system inner membrane component E4188_17635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_17640 PF02954 Bacterial regulatory protein, Fis family E4188_17640 PF00158 Sigma-54 interaction domain E4188_17645 PF04012 PspA/IM30 family E4188_17650 PF06667 Phage shock protein B E4188_17660 PF04317 YcjX-like family, DUF463 E4188_17665 PF05128 Domain of unknown function (DUF697) E4188_17670 PF00351 Biopterin-dependent aromatic amino acid hydroxylase E4188_17675 PF01329 Pterin 4 alpha carbinolamine dehydratase E4188_17680 PF00158 Sigma-54 interaction domain E4188_17680 PF18024 Helix-turn-helix domain E4188_17685 PF13689 YfiR/HmsC-like E4188_17690 PF17152 Periplasmic sensor domain E4188_17690 PF00990 Diguanylate cyclase, GGDEF domain E4188_17695 PF00691 OmpA family E4188_17700 PF04055 Radical SAM superfamily E4188_17705 PF13742 OB-fold nucleic acid binding domain E4188_17705 PF02601 Exonuclease VII, large subunit E4188_17715 PF00128 Alpha amylase, catalytic domain E4188_17715 PF03423 Carbohydrate binding domain (family 25) E4188_17715 PF01373 Glycosyl hydrolase family 14 E4188_17725 PF00478 IMP dehydrogenase / GMP reductase domain E4188_17725 PF00571 CBS domain E4188_17730 PF00117 Glutamine amidotransferase class-I E4188_17730 PF00958 GMP synthase C terminal domain E4188_17730 PF02540 NAD synthase E4188_17750 PF05724 Thiopurine S-methyltransferase (TPMT) E4188_17755 PF16187 Middle or third domain of peptidase_M16 E4188_17755 PF05193 Peptidase M16 inactive domain E4188_17755 PF00675 Insulinase (Peptidase family M16) E4188_17760 PF00300 Histidine phosphatase superfamily (branch 1) E4188_17770 PF00892 EamA-like transporter family E4188_17775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_17780 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E4188_17785 PF02559 CarD-like/TRCF domain E4188_17785 PF00270 DEAD/DEAH box helicase E4188_17785 PF03461 TRCF domain E4188_17785 PF17757 UvrB interaction domain E4188_17785 PF00271 Helicase conserved C-terminal domain E4188_17795 PF12704 MacB-like periplasmic core domain E4188_17795 PF02687 FtsX-like permease family E4188_17800 PF00005 ABC transporter E4188_17805 PF12704 MacB-like periplasmic core domain E4188_17805 PF02687 FtsX-like permease family E4188_17825 PF05697 Bacterial trigger factor protein (TF) E4188_17825 PF05698 Bacterial trigger factor protein (TF) C-terminus E4188_17825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E4188_17830 PF00574 Clp protease E4188_17835 PF06689 ClpX C4-type zinc finger E4188_17835 PF07724 AAA domain (Cdc48 subfamily) E4188_17835 PF10431 C-terminal, D2-small domain, of ClpB protein E4188_17840 PF05362 Lon protease (S16) C-terminal proteolytic domain E4188_17840 PF00004 ATPase family associated with various cellular activities (AAA) E4188_17840 PF02190 ATP-dependent protease La (LON) substrate-binding domain E4188_17845 PF00216 Bacterial DNA-binding protein E4188_17850 PF13145 PPIC-type PPIASE domain E4188_17855 PF12848 ABC transporter E4188_17855 PF00005 ABC transporter E4188_17860 PF00474 Sodium:solute symporter family E4188_17865 PF04341 Protein of unknown function, DUF485 E4188_17870 PF02811 PHP domain E4188_17870 PF07733 Bacterial DNA polymerase III alpha NTPase domain E4188_17870 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E4188_17870 PF14579 Helix-hairpin-helix motif E4188_17870 PF00929 Exonuclease E4188_17880 PF00378 Enoyl-CoA hydratase/isomerase E4188_17885 PF01235 Sodium:alanine symporter family E4188_17890 PF00583 Acetyltransferase (GNAT) family E4188_17895 PF06167 Glucose-regulated metallo-peptidase M90 E4188_17900 PF01184 GPR1/FUN34/yaaH family E4188_17910 PF09278 MerR, DNA binding E4188_17910 PF00376 MerR family regulatory protein E4188_17915 PF00682 HMGL-like E4188_17920 PF02785 Biotin carboxylase C-terminal domain E4188_17920 PF00289 Biotin carboxylase, N-terminal domain E4188_17920 PF00364 Biotin-requiring enzyme E4188_17920 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4188_17925 PF00378 Enoyl-CoA hydratase/isomerase E4188_17935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4188_17935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4188_17935 PF02770 Acyl-CoA dehydrogenase, middle domain E4188_17940 PF00171 Aldehyde dehydrogenase family E4188_17945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E4188_17945 PF02770 Acyl-CoA dehydrogenase, middle domain E4188_17945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E4188_17950 PF00378 Enoyl-CoA hydratase/isomerase E4188_17955 PF00378 Enoyl-CoA hydratase/isomerase E4188_17960 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E4188_17960 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E4188_17970 PF13520 Amino acid permease E4188_17975 PF01925 Sulfite exporter TauE/SafE E4188_17995 PF01609 Transposase DDE domain E4188_17995 PF05598 Transposase domain (DUF772) E4188_18005 PF10711 Hypothetical protein (DUF2513) E4188_18010 PF05598 Transposase domain (DUF772) E4188_18010 PF01609 Transposase DDE domain E4188_18015 PF00239 Resolvase, N terminal domain E4188_18015 PF02796 Helix-turn-helix domain of resolvase E4188_18025 PF01609 Transposase DDE domain E4188_18025 PF13808 DDE_Tnp_1-associated E4188_18045 PF02653 Branched-chain amino acid transport system / permease component E4188_18050 PF02653 Branched-chain amino acid transport system / permease component E4188_18055 PF00005 ABC transporter E4188_18060 PF13407 Periplasmic binding protein domain E4188_18065 PF03466 LysR substrate binding domain E4188_18065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_18080 PF02634 FdhD/NarQ family E4188_18085 PF00384 Molybdopterin oxidoreductase E4188_18095 PF07694 5TMR of 5TMR-LYT E4188_18095 PF00990 Diguanylate cyclase, GGDEF domain E4188_18100 PF03466 LysR substrate binding domain E4188_18100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_18105 PF00232 Glycosyl hydrolase family 1 E4188_18115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_18115 PF03466 LysR substrate binding domain E4188_18125 PF00933 Glycosyl hydrolase family 3 N terminal domain E4188_18135 PF01609 Transposase DDE domain E4188_18135 PF13808 DDE_Tnp_1-associated E4188_18140 PF07694 5TMR of 5TMR-LYT E4188_18140 PF00990 Diguanylate cyclase, GGDEF domain E4188_18150 PF13673 Acetyltransferase (GNAT) domain E4188_18155 PF00293 NUDIX domain E4188_18170 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E4188_18180 PF13673 Acetyltransferase (GNAT) domain E4188_18185 PF00271 Helicase conserved C-terminal domain E4188_18185 PF00270 DEAD/DEAH box helicase E4188_18190 PF00255 Glutathione peroxidase E4188_18200 PF07478 D-ala D-ala ligase C-terminus E4188_18200 PF01820 D-ala D-ala ligase N-terminus E4188_18205 PF18029 Glyoxalase-like domain E4188_18205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_18215 PF01925 Sulfite exporter TauE/SafE E4188_18220 PF03466 LysR substrate binding domain E4188_18220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_18230 PF01965 DJ-1/PfpI family E4188_18230 PF12833 Helix-turn-helix domain E4188_18235 PF11398 Protein of unknown function (DUF2813) E4188_18285 PF02789 Cytosol aminopeptidase family, N-terminal domain E4188_18285 PF00883 Cytosol aminopeptidase family, catalytic domain E4188_18290 PF13419 Haloacid dehalogenase-like hydrolase E4188_18295 PF01546 Peptidase family M20/M25/M40 E4188_18295 PF07687 Peptidase dimerisation domain E4188_18300 PF00365 Phosphofructokinase E4188_18305 PF00121 Triosephosphate isomerase E4188_18310 PF02698 DUF218 domain E4188_18315 PF13847 Methyltransferase domain E4188_18320 PF17192 MukF middle domain E4188_18320 PF03882 MukF winged-helix domain E4188_18320 PF17193 MukF C-terminal domain E4188_18325 PF04288 MukE-like family E4188_18330 PF16330 MukB hinge domain E4188_18330 PF04310 MukB N-terminal E4188_18335 PF05036 Sporulation related domain E4188_18335 PF03330 Lytic transglycolase E4188_18365 PF02567 Phenazine biosynthesis-like protein E4188_18375 PF01810 LysE type translocator E4188_18400 PF02384 N-6 DNA Methylase E4188_18405 PF08274 PhnA Zinc-Ribbon E4188_18405 PF03831 PhnA domain E4188_18415 PF08329 Chitinase A, N-terminal domain E4188_18415 PF00704 Glycosyl hydrolases family 18 E4188_18435 PF00300 Histidine phosphatase superfamily (branch 1) E4188_18445 PF01713 Smr domain E4188_18450 PF05175 Methyltransferase small domain E4188_18455 PF01264 Chorismate synthase E4188_18465 PF00271 Helicase conserved C-terminal domain E4188_18465 PF00270 DEAD/DEAH box helicase E4188_18470 PF01124 MAPEG family E4188_18475 PF03222 Tryptophan/tyrosine permease family E4188_18480 PF00356 Bacterial regulatory proteins, lacI family E4188_18480 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E4188_18485 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E4188_18485 PF00381 PTS HPr component phosphorylation site E4188_18490 PF00294 pfkB family carbohydrate kinase E4188_18495 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E4188_18495 PF02378 Phosphotransferase system, EIIC E4188_18500 PF06945 Protein of unknown function (DUF1289) E4188_18505 PF03562 MltA specific insert domain E4188_18505 PF06725 3D domain E4188_18510 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_18515 PF00268 Ribonucleotide reductase, small chain E4188_18520 PF03477 ATP cone domain E4188_18520 PF00317 Ribonucleotide reductase, all-alpha domain E4188_18520 PF02867 Ribonucleotide reductase, barrel domain E4188_18525 PF13419 Haloacid dehalogenase-like hydrolase E4188_18535 PF00521 DNA gyrase/topoisomerase IV, subunit A E4188_18535 PF03989 DNA gyrase C-terminal domain, beta-propeller E4188_18540 PF04055 Radical SAM superfamily E4188_18555 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E4188_18555 PF03129 Anticodon binding domain E4188_18555 PF02824 TGS domain E4188_18555 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E4188_18560 PF00707 Translation initiation factor IF-3, C-terminal domain E4188_18560 PF05198 Translation initiation factor IF-3, N-terminal domain E4188_18565 PF01632 Ribosomal protein L35 E4188_18570 PF00453 Ribosomal protein L20 E4188_18590 PF02384 N-6 DNA Methylase E4188_18595 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E4188_18595 PF01409 tRNA synthetases class II core domain (F) E4188_18600 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E4188_18600 PF03483 B3/4 domain E4188_18600 PF01588 Putative tRNA binding domain E4188_18600 PF03147 Ferredoxin-fold anticodon binding domain E4188_18600 PF03484 tRNA synthetase B5 domain E4188_18605 PF00216 Bacterial DNA-binding protein E4188_18610 PF00072 Response regulator receiver domain E4188_18610 PF09456 RcsC Alpha-Beta-Loop (ABL) E4188_18610 PF00512 His Kinase A (phospho-acceptor) domain E4188_18610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_18625 PF02146 Sir2 family E4188_18635 PF03707 Bacterial signalling protein N terminal repeat E4188_18635 PF00990 Diguanylate cyclase, GGDEF domain E4188_18635 PF00563 EAL domain E4188_18640 PF00356 Bacterial regulatory proteins, lacI family E4188_18645 PF00294 pfkB family carbohydrate kinase E4188_18650 PF13407 Periplasmic binding protein domain E4188_18655 PF02653 Branched-chain amino acid transport system / permease component E4188_18660 PF00005 ABC transporter E4188_18665 PF05025 RbsD / FucU transport protein family E4188_18670 PF13417 Glutathione S-transferase, N-terminal domain E4188_18685 PF01171 PP-loop family E4188_18690 PF00582 Universal stress protein family E4188_18695 PF00027 Cyclic nucleotide-binding domain E4188_18695 PF13545 Crp-like helix-turn-helix domain E4188_18710 PF00403 Heavy-metal-associated domain E4188_18720 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E4188_18720 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP E4188_18735 PF00115 Cytochrome C and Quinol oxidase polypeptide I E4188_18745 PF13185 GAF domain E4188_18750 PF04352 ProQ/FINO family E4188_18750 PF17516 ProQ C-terminal domain E4188_18755 PF00595 PDZ domain E4188_18755 PF03572 Peptidase family S41 E4188_18755 PF17804 Tail specific protease N-terminal domain E4188_18755 PF11818 C-terminal domain of tail specific protease (DUF3340) E4188_18760 PF11940 Domain of unknown function (DUF3458) Ig-like fold E4188_18760 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E4188_18760 PF01433 Peptidase family M1 domain E4188_18770 PF05088 Bacterial NAD-glutamate dehydrogenase E4188_18775 PF01180 Dihydroorotate dehydrogenase E4188_18780 PF07126 Cell-division protein ZapC E4188_18785 PF01170 Putative RNA methylase family UPF0020 E4188_18785 PF02926 THUMP domain E4188_18785 PF10672 S-adenosylmethionine-dependent methyltransferase E4188_18795 PF00005 ABC transporter E4188_18795 PF16326 ABC transporter C-terminal domain E4188_18795 PF12848 ABC transporter E4188_18805 PF04957 Ribosome modulation factor E4188_18810 PF07977 FabA-like domain E4188_18815 PF13654 AAA domain E4188_18815 PF05362 Lon protease (S16) C-terminal proteolytic domain E4188_18830 PF05840 Bacteriophage replication gene A protein (GPA) E4188_18880 PF07130 YebG protein E4188_18890 PF04403 Paraquat-inducible protein A E4188_18895 PF02470 MlaD protein E4188_18900 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E4188_18900 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E4188_18900 PF01189 16S rRNA methyltransferase RsmB/F E4188_18910 PF00589 Phage integrase family E4188_18915 PF01026 TatD related DNase E4188_18920 PF09115 DNA polymerase III, delta subunit, C terminal E4188_18925 PF02223 Thymidylate kinase E4188_18930 PF02618 YceG-like family E4188_18935 PF01063 Amino-transferase class IV E4188_18940 PF02801 Beta-ketoacyl synthase, C-terminal domain E4188_18940 PF00109 Beta-ketoacyl synthase, N-terminal domain E4188_18945 PF00550 Phosphopantetheine attachment site E4188_18955 PF00698 Acyl transferase domain E4188_18960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E4188_18960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E4188_18965 PF02504 Fatty acid synthesis protein E4188_18970 PF01783 Ribosomal L32p protein family E4188_18975 PF02620 Large ribosomal RNA subunit accumulation protein YceD E4188_18985 PF02545 Maf-like protein E4188_18990 PF13419 Haloacid dehalogenase-like hydrolase E4188_18995 PF00849 RNA pseudouridylate synthase E4188_18995 PF01479 S4 domain E4188_19000 PF00575 S1 RNA binding domain E4188_19000 PF10150 Ribonuclease E/G family E4188_19000 PF12111 Polyribonucleotide phosphorylase C terminal E4188_19005 PF01384 Phosphate transporter family E4188_19010 PF00692 dUTPase E4188_19015 PF00485 Phosphoribulokinase / Uridine kinase family E4188_19020 PF10609 NUBPL iron-transfer P-loop NTPase E4188_19025 PF08264 Anticodon-binding domain of tRNA E4188_19025 PF01588 Putative tRNA binding domain E4188_19025 PF09334 tRNA synthetases class I (M) E4188_19035 PF00708 Acylphosphatase E4188_19040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_19040 PF12729 Four helix bundle sensory module for signal transduction E4188_19040 PF00672 HAMP domain E4188_19045 PF10672 S-adenosylmethionine-dependent methyltransferase E4188_19045 PF17785 PUA-like domain E4188_19055 PF00586 AIR synthase related protein, N-terminal domain E4188_19055 PF02769 AIR synthase related protein, C-terminal domain E4188_19065 PF00753 Metallo-beta-lactamase superfamily E4188_19070 PF00072 Response regulator receiver domain E4188_19080 PF01386 Ribosomal L25p family E4188_19090 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E4188_19090 PF11898 Domain of unknown function (DUF3418) E4188_19090 PF04408 Helicase associated domain (HA2) E4188_19090 PF00270 DEAD/DEAH box helicase E4188_19090 PF00271 Helicase conserved C-terminal domain E4188_19095 PF02272 DHHA1 domain E4188_19095 PF01368 DHH family E4188_19095 PF01743 Poly A polymerase head domain E4188_19095 PF00571 CBS domain E4188_19100 PF00072 Response regulator receiver domain E4188_19100 PF00196 Bacterial regulatory proteins, luxR family E4188_19110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_19110 PF03466 LysR substrate binding domain E4188_19115 PF05726 Pirin C-terminal cupin domain E4188_19115 PF02678 Pirin E4188_19120 PF00857 Isochorismatase family E4188_19125 PF02575 YbaB/EbfC DNA-binding family E4188_19130 PF12169 DNA polymerase III subunits gamma and tau domain III E4188_19130 PF12170 DNA polymerase III tau subunit V interacting with alpha E4188_19130 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E4188_19135 PF00156 Phosphoribosyl transferase domain E4188_19140 PF04304 Protein of unknown function (DUF454) E4188_19145 PF01207 Dihydrouridine synthase (Dus) E4188_19155 PF00892 EamA-like transporter family E4188_19165 PF00570 HRDC domain E4188_19165 PF01612 3'-5' exonuclease E4188_19170 PF13193 AMP-binding enzyme C-terminal domain E4188_19170 PF00501 AMP-binding enzyme E4188_19175 PF00561 alpha/beta hydrolase fold E4188_19185 PF00814 Glycoprotease family E4188_19190 PF13307 Helicase C-terminal domain E4188_19190 PF04851 Type III restriction enzyme, res subunit E4188_19200 PF01634 ATP phosphoribosyltransferase E4188_19200 PF08029 HisG, C-terminal domain E4188_19205 PF00815 Histidinol dehydrogenase E4188_19210 PF00155 Aminotransferase class I and II E4188_19215 PF00475 Imidazoleglycerol-phosphate dehydratase E4188_19215 PF08645 Polynucleotide kinase 3 phosphatase E4188_19220 PF00117 Glutamine amidotransferase class-I E4188_19225 PF00977 Histidine biosynthesis protein E4188_19230 PF00072 Response regulator receiver domain E4188_19240 PF00072 Response regulator receiver domain E4188_19240 PF01627 Hpt domain E4188_19240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_19240 PF00512 His Kinase A (phospho-acceptor) domain E4188_19245 PF00977 Histidine biosynthesis protein E4188_19250 PF01502 Phosphoribosyl-AMP cyclohydrolase E4188_19250 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E4188_19260 PF08279 HTH domain E4188_19260 PF13280 WYL domain E4188_19265 PF13193 AMP-binding enzyme C-terminal domain E4188_19265 PF00501 AMP-binding enzyme E4188_19270 PF05433 Glycine zipper 2TM domain E4188_19285 PF01032 FecCD transport family E4188_19290 PF00005 ABC transporter E4188_19295 PF07690 Major Facilitator Superfamily E4188_19310 PF07152 YaeQ protein E4188_19320 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E4188_19320 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E4188_19320 PF00378 Enoyl-CoA hydratase/isomerase E4188_19325 PF00108 Thiolase, N-terminal domain E4188_19325 PF02803 Thiolase, C-terminal domain E4188_19330 PF07726 ATPase family associated with various cellular activities (AAA) E4188_19330 PF17863 AAA lid domain E4188_19340 PF01882 Protein of unknown function DUF58 E4188_19350 PF13519 von Willebrand factor type A domain E4188_19350 PF17863 AAA lid domain E4188_19350 PF07728 AAA domain (dynein-related subfamily) E4188_19355 PF07584 Aerotolerance regulator N-terminal E4188_19355 PF13519 von Willebrand factor type A domain E4188_19365 PF04542 Sigma-70 region 2 E4188_19365 PF08281 Sigma-70, region 4 E4188_19375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4188_19380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4188_19385 PF08668 HDOD domain E4188_19385 PF00563 EAL domain E4188_19390 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E4188_19395 PF00108 Thiolase, N-terminal domain E4188_19395 PF02803 Thiolase, C-terminal domain E4188_19400 PF00376 MerR family regulatory protein E4188_19400 PF09278 MerR, DNA binding E4188_19405 PF00375 Sodium:dicarboxylate symporter family E4188_19410 PF06865 Pyrimidine/purine nucleoside phosphorylase E4188_19415 PF03315 Serine dehydratase beta chain E4188_19415 PF03313 Serine dehydratase alpha chain E4188_19425 PF03313 Serine dehydratase alpha chain E4188_19425 PF03315 Serine dehydratase beta chain E4188_19430 PF13406 Transglycosylase SLT domain E4188_19435 PF05166 YcgL domain E4188_19440 PF03775 Septum formation inhibitor MinC, C-terminal domain E4188_19440 PF05209 Septum formation inhibitor MinC, N-terminal domain E4188_19445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E4188_19450 PF03776 Septum formation topological specificity factor MinE E4188_19455 PF04269 Protein of unknown function, DUF440 E4188_19460 PF00912 Transglycosylase E4188_19465 PF04269 Protein of unknown function, DUF440 E4188_19475 PF13509 S1 domain E4188_19475 PF17783 CvfB-like winged helix domain E4188_19495 PF02525 Flavodoxin-like fold E4188_19500 PF00892 EamA-like transporter family E4188_19505 PF01370 NAD dependent epimerase/dehydratase family E4188_19505 PF02222 ATP-grasp domain E4188_19510 PF13419 Haloacid dehalogenase-like hydrolase E4188_19520 PF00677 Lumazine binding domain E4188_19525 PF06786 Uncharacterised protein family (UPF0253) E4188_19530 PF01554 MatE E4188_19560 PF03104 DNA polymerase family B, exonuclease domain E4188_19560 PF00136 DNA polymerase family B E4188_19570 PF02678 Pirin E4188_19570 PF05726 Pirin C-terminal cupin domain E4188_19585 PF03279 Bacterial lipid A biosynthesis acyltransferase E4188_19590 PF03279 Bacterial lipid A biosynthesis acyltransferase E4188_19600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_19600 PF03466 LysR substrate binding domain E4188_19605 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E4188_19605 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E4188_19610 PF01261 Xylose isomerase-like TIM barrel E4188_19615 PF03992 Antibiotic biosynthesis monooxygenase E4188_19620 PF08543 Phosphomethylpyrimidine kinase E4188_19640 PF00561 alpha/beta hydrolase fold E4188_19640 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus E4188_19645 PF01575 MaoC like domain E4188_19665 PF00664 ABC transporter transmembrane region E4188_19665 PF00005 ABC transporter E4188_19670 PF00005 ABC transporter E4188_19670 PF00664 ABC transporter transmembrane region E4188_19675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E4188_19675 PF01627 Hpt domain E4188_19675 PF00512 His Kinase A (phospho-acceptor) domain E4188_19675 PF00672 HAMP domain E4188_19675 PF00072 Response regulator receiver domain E4188_19675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_19680 PF00085 Thioredoxin E4188_19685 PF00939 Sodium:sulfate symporter transmembrane region E4188_19695 PF00343 Carbohydrate phosphorylase E4188_19715 PF00425 chorismate binding enzyme E4188_19715 PF04715 Anthranilate synthase component I, N terminal region E4188_19720 PF00293 NUDIX domain E4188_19725 PF03222 Tryptophan/tyrosine permease family E4188_19730 PF00375 Sodium:dicarboxylate symporter family E4188_19735 PF09382 RQC domain E4188_19735 PF16124 RecQ zinc-binding E4188_19735 PF00270 DEAD/DEAH box helicase E4188_19735 PF00271 Helicase conserved C-terminal domain E4188_19735 PF00570 HRDC domain E4188_19740 PF06798 PrkA serine protein kinase C-terminal domain E4188_19740 PF08298 PrkA AAA domain E4188_19745 PF04285 Protein of unknown function (DUF444) E4188_19750 PF04293 SpoVR like protein E4188_19755 PF07840 FadR C-terminal domain E4188_19755 PF00392 Bacterial regulatory proteins, gntR family E4188_19760 PF06450 Bacterial Na+/H+ antiporter B (NhaB) E4188_19765 PF02600 Disulfide bond formation protein DsbB E4188_19775 PF09335 SNARE associated Golgi protein E4188_19785 PF00271 Helicase conserved C-terminal domain E4188_19785 PF04851 Type III restriction enzyme, res subunit E4188_19785 PF17757 UvrB interaction domain E4188_19785 PF12344 Ultra-violet resistance protein B E4188_19785 PF02151 UvrB/uvrC motif E4188_19800 PF02080 TrkA-C domain E4188_19800 PF06826 Predicted Permease Membrane Region E4188_19805 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_19805 PF01464 Transglycosylase SLT domain E4188_19820 PF01970 Tripartite tricarboxylate transporter TctA family E4188_19825 PF00072 Response regulator receiver domain E4188_19830 PF00989 PAS fold E4188_19830 PF17203 Single cache domain 3 E4188_19830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_19830 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E4188_19835 PF00480 ROK family E4188_19835 PF01047 MarR family E4188_19840 PF17200 Single Cache domain 2 E4188_19840 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_19840 PF00672 HAMP domain E4188_19845 PF02810 SEC-C motif E4188_19850 PF04324 BFD-like [2Fe-2S] binding domain E4188_19850 PF01266 FAD dependent oxidoreductase E4188_19855 PF00890 FAD binding domain E4188_19860 PF02754 Cysteine-rich domain E4188_19860 PF13183 4Fe-4S dicluster domain E4188_19870 PF13808 DDE_Tnp_1-associated E4188_19870 PF01609 Transposase DDE domain E4188_19880 PF02335 Cytochrome c552 E4188_19885 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) E4188_19885 PF13435 Cytochrome c554 and c-prime E4188_19890 PF13247 4Fe-4S dicluster domain E4188_19890 PF00037 4Fe-4S binding domain E4188_19895 PF03916 Polysulphide reductase, NrfD E4188_19900 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E4188_19900 PF01578 Cytochrome C assembly protein E4188_19905 PF08534 Redoxin E4188_19910 PF03918 Cytochrome C biogenesis protein E4188_19920 PF00768 D-alanyl-D-alanine carboxypeptidase E4188_19930 PF04244 Deoxyribodipyrimidine photo-lyase-related protein E4188_19935 PF01266 FAD dependent oxidoreductase E4188_19945 PF07969 Amidohydrolase family E4188_19950 PF00571 CBS domain E4188_19960 PF08267 Cobalamin-independent synthase, N-terminal domain E4188_19960 PF01717 Cobalamin-independent synthase, Catalytic domain E4188_19965 PF03466 LysR substrate binding domain E4188_19965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_19975 PF07715 TonB-dependent Receptor Plug Domain E4188_19975 PF00593 TonB dependent receptor E4188_19980 PF12833 Helix-turn-helix domain E4188_19980 PF06445 GyrI-like small molecule binding domain E4188_19985 PF00106 short chain dehydrogenase E4188_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_19990 PF03466 LysR substrate binding domain E4188_19995 PF13460 NAD(P)H-binding E4188_20005 PF01053 Cys/Met metabolism PLP-dependent enzyme E4188_20010 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E4188_20010 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E4188_20035 PF05598 Transposase domain (DUF772) E4188_20035 PF01609 Transposase DDE domain E4188_20145 PF00872 Transposase, Mutator family E4188_20160 PF13657 HipA N-terminal domain E4188_20160 PF07804 HipA-like C-terminal domain E4188_20175 PF00141 Peroxidase E4188_20190 PF10722 Putative bacterial sensory transduction regulator E4188_20200 PF00265 Thymidine kinase E4188_20205 PF03553 Na+/H+ antiporter family E4188_20210 PF00816 H-NS histone family E4188_20215 PF01923 Cobalamin adenosyltransferase E4188_20220 PF12843 Putative quorum-sensing-regulated virulence factor E4188_20225 PF04055 Radical SAM superfamily E4188_20230 PF06508 Queuosine biosynthesis protein QueC E4188_20245 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E4188_20250 PF18073 Rubredoxin metal binding domain E4188_20260 PF00216 Bacterial DNA-binding protein E4188_20265 PF00575 S1 RNA binding domain E4188_20270 PF02224 Cytidylate kinase E4188_20275 PF00925 GTP cyclohydrolase II E4188_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_20280 PF03466 LysR substrate binding domain E4188_20285 PF07690 Major Facilitator Superfamily E4188_20305 PF03806 AbgT putative transporter family E4188_20310 PF00563 EAL domain E4188_20310 PF13188 PAS domain E4188_20310 PF00990 Diguanylate cyclase, GGDEF domain E4188_20310 PF03707 Bacterial signalling protein N terminal repeat E4188_20320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_20320 PF03466 LysR substrate binding domain E4188_20325 PF00072 Response regulator receiver domain E4188_20335 PF01212 Beta-eliminating lyase E4188_20350 PF00248 Aldo/keto reductase family E4188_20355 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) E4188_20365 PF03411 Penicillin-insensitive murein endopeptidase E4188_20375 PF04536 TPM domain E4188_20395 PF01618 MotA/TolQ/ExbB proton channel family E4188_20400 PF00691 OmpA family E4188_20400 PF13677 Membrane MotB of proton-channel complex MotA/MotB E4188_20405 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E4188_20410 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E4188_20415 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E4188_20415 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E4188_20425 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E4188_20425 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E4188_20430 PF00384 Molybdopterin oxidoreductase E4188_20430 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E4188_20430 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E4188_20435 PF00146 NADH dehydrogenase E4188_20440 PF12838 4Fe-4S dicluster domain E4188_20445 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E4188_20450 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E4188_20455 PF00361 Proton-conducting membrane transporter E4188_20455 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E4188_20460 PF00361 Proton-conducting membrane transporter E4188_20465 PF00361 Proton-conducting membrane transporter E4188_20470 PF02769 AIR synthase related protein, C-terminal domain E4188_20470 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E4188_20470 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E4188_20475 PF01464 Transglycosylase SLT domain E4188_20475 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_20485 PF01926 50S ribosome-binding GTPase E4188_20485 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E4188_20490 PF13360 PQQ-like domain E4188_20495 PF09976 Tetratricopeptide repeat-like domain E4188_20500 PF13393 Histidyl-tRNA synthetase E4188_20500 PF03129 Anticodon binding domain E4188_20505 PF04551 GcpE protein E4188_20510 PF13464 Domain of unknown function (DUF4115) E4188_20520 PF04055 Radical SAM superfamily E4188_20525 PF00334 Nucleoside diphosphate kinase E4188_20530 PF12404 Peptidase E4188_20530 PF00883 Cytosol aminopeptidase family, catalytic domain E4188_20535 PF12404 Peptidase E4188_20535 PF00883 Cytosol aminopeptidase family, catalytic domain E4188_20540 PF00111 2Fe-2S iron-sulfur cluster binding domain E4188_20545 PF00012 Hsp70 protein E4188_20550 PF07743 HSCB C-terminal oligomerisation domain E4188_20550 PF00226 DnaJ domain E4188_20555 PF01521 Iron-sulphur cluster biosynthesis E4188_20560 PF01592 NifU-like N terminal domain E4188_20565 PF00266 Aminotransferase class-V E4188_20570 PF02082 Transcriptional regulator E4188_20575 PF00588 SpoU rRNA Methylase family E4188_20585 PF02036 SCP-2 sterol transfer family E4188_20590 PF01136 Peptidase family U32 E4188_20595 PF01136 Peptidase family U32 E4188_20600 PF13181 Tetratricopeptide repeat E4188_20600 PF07719 Tetratricopeptide repeat E4188_20605 PF00581 Rhodanese-like domain E4188_20610 PF02355 Protein export membrane protein E4188_20610 PF07549 SecD/SecF GG Motif E4188_20615 PF07549 SecD/SecF GG Motif E4188_20615 PF13721 SecD export protein N-terminal TM region E4188_20615 PF02355 Protein export membrane protein E4188_20620 PF02699 Preprotein translocase subunit E4188_20625 PF01702 Queuine tRNA-ribosyltransferase E4188_20630 PF02547 Queuosine biosynthesis protein E4188_20635 PF00571 CBS domain E4188_20640 PF10417 C-terminal domain of 1-Cys peroxiredoxin E4188_20640 PF00578 AhpC/TSA family E4188_20645 PF13192 Thioredoxin domain E4188_20645 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_20650 PF07690 Major Facilitator Superfamily E4188_20660 PF08241 Methyltransferase domain E4188_20675 PF01609 Transposase DDE domain E4188_20675 PF05598 Transposase domain (DUF772) E4188_20680 PF13006 Insertion element 4 transposase N-terminal E4188_20680 PF01609 Transposase DDE domain E4188_20685 PF02347 Glycine cleavage system P-protein E4188_20690 PF01597 Glycine cleavage H-protein E4188_20695 PF01571 Aminomethyltransferase folate-binding domain E4188_20695 PF08669 Glycine cleavage T-protein C-terminal barrel domain E4188_20700 PF01494 FAD binding domain E4188_20705 PF01494 FAD binding domain E4188_20710 PF03695 Uncharacterised protein family (UPF0149) E4188_20715 PF02384 N-6 DNA Methylase E4188_20740 PF05164 Cell division protein ZapA E4188_20750 PF07690 Major Facilitator Superfamily E4188_20755 PF00005 ABC transporter E4188_20755 PF02687 FtsX-like permease family E4188_20755 PF12704 MacB-like periplasmic core domain E4188_20760 PF00528 Binding-protein-dependent transport system inner membrane component E4188_20760 PF12911 N-terminal TM domain of oligopeptide transport permease C E4188_20765 PF00528 Binding-protein-dependent transport system inner membrane component E4188_20770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_20775 PF00043 Glutathione S-transferase, C-terminal domain E4188_20775 PF02798 Glutathione S-transferase, N-terminal domain E4188_20790 PF00459 Inositol monophosphatase family E4188_20795 PF18393 MotY N-terminal domain E4188_20795 PF00691 OmpA family E4188_20800 PF00672 HAMP domain E4188_20800 PF12729 Four helix bundle sensory module for signal transduction E4188_20800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_20805 PF00929 Exonuclease E4188_20810 PF13726 Na+-H+ antiporter family E4188_20810 PF03553 Na+/H+ antiporter family E4188_20815 PF07690 Major Facilitator Superfamily E4188_20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E4188_20820 PF03466 LysR substrate binding domain E4188_20825 PF00563 EAL domain E4188_20825 PF08447 PAS fold E4188_20825 PF00990 Diguanylate cyclase, GGDEF domain E4188_20825 PF08448 PAS fold E4188_20835 PF00270 DEAD/DEAH box helicase E4188_20835 PF00271 Helicase conserved C-terminal domain E4188_20835 PF03880 DbpA RNA binding domain E4188_20840 PF03061 Thioesterase superfamily E4188_20850 PF01565 FAD binding domain E4188_20850 PF02913 FAD linked oxidases, C-terminal domain E4188_20850 PF13183 4Fe-4S dicluster domain E4188_20860 PF03471 Transporter associated domain E4188_20860 PF03741 Integral membrane protein TerC family E4188_20865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E4188_20870 PF00962 Adenosine/AMP deaminase E4188_20875 PF13344 Haloacid dehalogenase-like hydrolase E4188_20885 PF00733 Asparagine synthase E4188_20885 PF13537 Glutamine amidotransferase domain E4188_20895 PF02798 Glutathione S-transferase, N-terminal domain E4188_20895 PF14497 Glutathione S-transferase, C-terminal domain E4188_20905 PF04209 homogentisate 1,2-dioxygenase E4188_20910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E4188_20920 PF00849 RNA pseudouridylate synthase E4188_20925 PF08448 PAS fold E4188_20925 PF00990 Diguanylate cyclase, GGDEF domain E4188_20930 PF13006 Insertion element 4 transposase N-terminal E4188_20930 PF01609 Transposase DDE domain E4188_20935 PF08447 PAS fold E4188_20935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E4188_20940 PF00501 AMP-binding enzyme E4188_20940 PF13193 AMP-binding enzyme C-terminal domain E4188_20960 PF14870 Photosynthesis system II assembly factor YCF48 E4188_20965 PF07044 Protein of unknown function (DUF1329) E4188_20975 PF01144 Coenzyme A transferase E4188_20980 PF01144 Coenzyme A transferase E4188_20985 PF03601 Conserved hypothetical protein 698 E4188_20995 PF07690 Major Facilitator Superfamily E4188_21000 PF05853 beta-keto acid cleavage enzyme E4188_21005 PF02668 Taurine catabolism dioxygenase TauD, TfdA family E4188_21010 PF08240 Alcohol dehydrogenase GroES-like domain E4188_21010 PF00107 Zinc-binding dehydrogenase E4188_21020 PF00285 Citrate synthase, C-terminal domain E4188_21025 PF00330 Aconitase family (aconitate hydratase) E4188_21025 PF00694 Aconitase C-terminal domain E4188_21030 PF04303 PrpF protein E4188_21040 PF01027 Inhibitor of apoptosis-promoting Bax1 E4188_21045 PF12805 FUSC-like inner membrane protein yccS E4188_21050 PF04358 DsrC like protein E4188_21055 PF05036 Sporulation related domain E4188_21060 PF02875 Mur ligase family, glutamate ligase domain E4188_21060 PF08245 Mur ligase middle domain E4188_21065 PF17848 Acetyl-coA carboxylase zinc finger domain E4188_21065 PF01039 Carboxyl transferase domain E4188_21070 PF01416 tRNA pseudouridine synthase E4188_21080 PF01118 Semialdehyde dehydrogenase, NAD binding domain E4188_21080 PF02774 Semialdehyde dehydrogenase, dimerisation domain E4188_21085 PF11890 Domain of unknown function (DUF3410) E4188_21085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4188_21085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4188_21090 PF01569 PAP2 superfamily E4188_21095 PF03180 NLPA lipoprotein E4188_21115 PF00005 ABC transporter E4188_21120 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E4188_21120 PF02896 PEP-utilising enzyme, TIM barrel domain E4188_21120 PF00391 PEP-utilising enzyme, mobile domain E4188_21125 PF03618 Kinase/pyrophosphorylase E4188_21135 PF00324 Amino acid permease E4188_21175 PF00664 ABC transporter transmembrane region E4188_21175 PF00005 ABC transporter E4188_21175 PF03412 Peptidase C39 family E4188_21180 PF16199 Radical_SAM C-terminal domain E4188_21180 PF04055 Radical SAM superfamily E4188_21185 PF00310 Glutamine amidotransferases class-II E4188_21185 PF04898 Glutamate synthase central domain E4188_21185 PF01645 Conserved region in glutamate synthase E4188_21185 PF01493 GXGXG motif E4188_21190 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E4188_21190 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_21195 PF13006 Insertion element 4 transposase N-terminal E4188_21195 PF01609 Transposase DDE domain E4188_21200 PF00005 ABC transporter E4188_21205 PF00528 Binding-protein-dependent transport system inner membrane component E4188_21210 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_21225 PF14521 Lysine-specific metallo-endopeptidase E4188_21235 PF00270 DEAD/DEAH box helicase E4188_21235 PF00271 Helicase conserved C-terminal domain E4188_21250 PF08378 Nuclease-related domain E4188_21255 PF07759 Protein of unknown function (DUF1615) E4188_21265 PF00682 HMGL-like E4188_21265 PF08502 LeuA allosteric (dimerisation) domain E4188_21270 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E4188_21270 PF02142 MGS-like domain E4188_21270 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E4188_21275 PF00117 Glutamine amidotransferase class-I E4188_21275 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E4188_21280 PF01113 Dihydrodipicolinate reductase, N-terminus E4188_21280 PF05173 Dihydrodipicolinate reductase, C-terminus E4188_21290 PF01812 5-formyltetrahydrofolate cyclo-ligase family E4188_21295 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E4188_21300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E4188_21300 PF01842 ACT domain E4188_21300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E4188_21305 PF01219 Prokaryotic diacylglycerol kinase E4188_21310 PF00793 DAHP synthetase I family E4188_21315 PF00005 ABC transporter E4188_21320 PF01032 FecCD transport family E4188_21340 PF00483 Nucleotidyl transferase E4188_21350 PF07670 Nucleoside recognition E4188_21350 PF07664 Ferrous iron transport protein B C terminus E4188_21350 PF02421 Ferrous iron transport protein B E4188_21360 PF01253 Translation initiation factor SUI1 E4188_21365 PF01169 Uncharacterized protein family UPF0016 E4188_21395 PF01609 Transposase DDE domain E4188_21395 PF13006 Insertion element 4 transposase N-terminal E4188_21430 PF01609 Transposase DDE domain E4188_21430 PF05598 Transposase domain (DUF772) E4188_21435 PF01406 tRNA synthetases class I (C) catalytic domain E4188_21435 PF09190 DALR domain E4188_21440 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E4188_21450 PF00149 Calcineurin-like phosphoesterase E4188_21455 PF04226 Transglycosylase associated protein E4188_21460 PF13417 Glutathione S-transferase, N-terminal domain E4188_21460 PF00043 Glutathione S-transferase, C-terminal domain E4188_21470 PF12323 Helix-turn-helix domain E4188_21480 PF02661 Fic/DOC family E4188_21480 PF13784 Fic/DOC family N-terminal E4188_21520 PF00589 Phage integrase family E4188_21540 PF01066 CDP-alcohol phosphatidyltransferase E4188_21545 PF01541 GIY-YIG catalytic domain E4188_21545 PF02151 UvrB/uvrC motif E4188_21545 PF08459 UvrC Helix-hairpin-helix N-terminal E4188_21550 PF00196 Bacterial regulatory proteins, luxR family E4188_21550 PF00072 Response regulator receiver domain E4188_21555 PF02348 Cytidylyltransferase E4188_21560 PF03966 Trm112p-like protein E4188_21565 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E4188_21570 PF00005 ABC transporter E4188_21570 PF00664 ABC transporter transmembrane region E4188_21575 PF03772 Competence protein E4188_21575 PF00753 Metallo-beta-lactamase superfamily E4188_21590 PF05872 Bacterial protein of unknown function (DUF853) E4188_21595 PF00155 Aminotransferase class I and II E4188_21605 PF13609 Gram-negative porin E4188_21625 PF02384 N-6 DNA Methylase E4188_21630 PF06733 DEAD_2 E4188_21630 PF13307 Helicase C-terminal domain E4188_21640 PF00850 Histone deacetylase domain E4188_21645 PF07690 Major Facilitator Superfamily E4188_21650 PF01926 50S ribosome-binding GTPase E4188_21655 PF00245 Alkaline phosphatase E4188_21660 PF00245 Alkaline phosphatase E4188_21680 PF14760 Rnk N-terminus E4188_21680 PF01272 Transcription elongation factor, GreA/GreB, C-term E4188_21685 PF00072 Response regulator receiver domain E4188_21685 PF00196 Bacterial regulatory proteins, luxR family E4188_21690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_21690 PF07730 Histidine kinase E4188_21690 PF05231 MASE1 E4188_21695 PF07690 Major Facilitator Superfamily E4188_21705 PF07282 Putative transposase DNA-binding domain E4188_21705 PF01385 Probable transposase E4188_21705 PF12323 Helix-turn-helix domain E4188_21720 PF00497 Bacterial extracellular solute-binding proteins, family 3 E4188_21725 PF00528 Binding-protein-dependent transport system inner membrane component E4188_21730 PF00005 ABC transporter E4188_21735 PF04116 Fatty acid hydroxylase superfamily E4188_21740 PF13520 Amino acid permease E4188_21755 PF00571 CBS domain E4188_21755 PF03471 Transporter associated domain E4188_21755 PF01595 Cyclin M transmembrane N-terminal domain E4188_21760 PF01895 PhoU domain E4188_21770 PF00528 Binding-protein-dependent transport system inner membrane component E4188_21775 PF00528 Binding-protein-dependent transport system inner membrane component E4188_21780 PF14437 MafB19-like deaminase E4188_21790 PF01274 Malate synthase E4188_21795 PF00463 Isocitrate lyase family E4188_21800 PF01609 Transposase DDE domain E4188_21800 PF13006 Insertion element 4 transposase N-terminal E4188_21805 PF00308 Bacterial dnaA protein E4188_21820 PF02769 AIR synthase related protein, C-terminal domain E4188_21820 PF00586 AIR synthase related protein, N-terminal domain E4188_21825 PF00551 Formyl transferase E4188_21830 PF01784 NIF3 (NGG1p interacting factor 3) E4188_21835 PF00158 Sigma-54 interaction domain E4188_21835 PF00072 Response regulator receiver domain E4188_21835 PF02954 Bacterial regulatory protein, Fis family E4188_21840 PF00989 PAS fold E4188_21840 PF00512 His Kinase A (phospho-acceptor) domain E4188_21840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E4188_21845 PF00158 Sigma-54 interaction domain E4188_21845 PF02954 Bacterial regulatory protein, Fis family E4188_21845 PF06490 Flagellar regulatory protein FleQ E4188_21855 PF01842 ACT domain E4188_21860 PF17941 Polyphosphate kinase C-terminal domain 1 E4188_21860 PF13090 Polyphosphate kinase C-terminal domain 2 E4188_21860 PF02503 Polyphosphate kinase middle domain E4188_21860 PF13089 Polyphosphate kinase N-terminal domain E4188_21865 PF02541 Ppx/GppA phosphatase family E4188_21880 PF07196 Flagellin hook IN motif E4188_21880 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4188_21885 PF10135 Rod binding protein E4188_21885 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E4188_21890 PF02119 Flagellar P-ring protein E4188_21895 PF02107 Flagellar L-ring protein E4188_21900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4188_21900 PF00460 Flagella basal body rod protein E4188_21905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4188_21905 PF00460 Flagella basal body rod protein E4188_21910 PF00460 Flagella basal body rod protein E4188_21910 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4188_21920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E4188_21920 PF00460 Flagella basal body rod protein E4188_21925 PF00460 Flagella basal body rod protein E4188_21930 PF03705 CheR methyltransferase, all-alpha domain E4188_21930 PF01739 CheR methyltransferase, SAM binding domain E4188_21935 PF01584 CheW-like domain E4188_21935 PF00072 Response regulator receiver domain E4188_21940 PF13144 Chaperone for flagella basal body P-ring formation E4188_21955 PF12850 Calcineurin-like phosphoesterase superfamily domain E4188_21960 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_21970 PF01479 S4 domain E4188_21970 PF00849 RNA pseudouridylate synthase E4188_21975 PF01609 Transposase DDE domain E4188_21975 PF13006 Insertion element 4 transposase N-terminal E4188_21980 PF12323 Helix-turn-helix domain E4188_21980 PF01385 Probable transposase E4188_21980 PF07282 Putative transposase DNA-binding domain E4188_21990 PF11871 Domain of unknown function (DUF3391) E4188_21990 PF01966 HD domain E4188_22000 PF00892 EamA-like transporter family E4188_22005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E4188_22030 PF00313 'Cold-shock' DNA-binding domain E4188_22035 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E4188_22035 PF02817 e3 binding domain E4188_22035 PF00364 Biotin-requiring enzyme E4188_22040 PF02780 Transketolase, C-terminal domain E4188_22040 PF02779 Transketolase, pyrimidine binding domain E4188_22045 PF00676 Dehydrogenase E1 component E4188_22050 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E4188_22060 PF05472 DNA replication terminus site-binding protein (Ter protein) E4188_22065 PF00271 Helicase conserved C-terminal domain E4188_22065 PF04434 SWIM zinc finger E4188_22065 PF00176 SNF2 family N-terminal domain E4188_22070 PF04337 Protein of unknown function, DUF480 E4188_22085 PF06082 Exopolysaccharide biosynthesis protein YbjH E4188_22090 PF06251 Capsule biosynthesis GfcC E4188_22105 PF13614 AAA domain E4188_22105 PF02706 Chain length determinant protein E4188_22105 PF13807 G-rich domain on putative tyrosine kinase E4188_22110 PF01451 Low molecular weight phosphotyrosine protein phosphatase E4188_22115 PF02563 Polysaccharide biosynthesis/export protein E4188_22115 PF18412 Outer-membrane lipoprotein Wza C-terminal domain E4188_22115 PF10531 SLBB domain E4188_22140 PF00534 Glycosyl transferases group 1 E4188_22140 PF13439 Glycosyltransferase Family 4 E4188_22145 PF00534 Glycosyl transferases group 1 E4188_22145 PF13439 Glycosyltransferase Family 4 E4188_22150 PF00535 Glycosyl transferase family 2 E4188_22150 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 E4188_22165 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E4188_22170 PF05523 WxcM-like, C-terminal E4188_22175 PF00483 Nucleotidyl transferase E4188_22180 PF16363 GDP-mannose 4,6 dehydratase E4188_22250 PF13361 UvrD-like helicase C-terminal domain E4188_22250 PF00580 UvrD/REP helicase N-terminal domain E4188_22305 PF00145 C-5 cytosine-specific DNA methylase E4188_22330 PF06122 Conjugative relaxosome accessory transposon protein E4188_22380 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system E4188_22470 PF00436 Single-strand binding protein family E4188_22485 PF06630 Enterobacterial exodeoxyribonuclease VIII E4188_22485 PF12684 PDDEXK-like domain of unknown function (DUF3799) E4188_22520 PF10411 Disulfide bond isomerase protein N-terminus E4188_22520 PF13098 Thioredoxin-like domain E4188_22580 PF05816 Toxic anion resistance protein (TelA) E4188_22585 PF05816 Toxic anion resistance protein (TelA) E4188_22715 PF02384 N-6 DNA Methylase E4188_22830 PF04307 LexA-binding, inner membrane-associated putative hydrolase E4188_22855 PF00801 PKD domain E4188_22855 PF05547 Immune inhibitor A peptidase M6 E4188_22905 PF10502 Signal peptidase, peptidase S26 E4188_22915 PF06834 TraU protein E4188_22920 PF06986 Type-1V conjugative transfer system mating pair stabilisation E4188_22950 PF13307 Helicase C-terminal domain E4188_22975 PF09906 Uncharacterized protein conserved in bacteria (DUF2135) E4188_22995 PF02517 CPBP intramembrane metalloprotease E4188_23030 PF13614 AAA domain E4188_23045 PF00816 H-NS histone family E4188_23105 PF18766 SWI2/SNF2 ATPase E4188_23105 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) E4188_23105 PF11867 Domain of unknown function (DUF3387) E4188_23115 PF17761 DUF1016 N-terminal domain E4188_23115 PF06250 YhcG PDDEXK nuclease domain E4188_23120 PF02384 N-6 DNA Methylase E4188_23130 PF00196 Bacterial regulatory proteins, luxR family E4188_23130 PF00563 EAL domain E4188_23245 PF03050 Transposase IS66 family E4188_23245 PF13005 zinc-finger binding domain of transposase IS66 E4188_23245 PF13007 Transposase C of IS166 homeodomain E4188_23245 PF13817 IS66 C-terminal element E4188_23250 PF05717 IS66 Orf2 like protein E4188_23285 PF00239 Resolvase, N terminal domain E4188_23285 PF02796 Helix-turn-helix domain of resolvase E4188_23315 PF11871 Domain of unknown function (DUF3391) E4188_23315 PF01966 HD domain E4188_23320 PF11871 Domain of unknown function (DUF3391) E4188_23320 PF01966 HD domain E4188_23335 PF03050 Transposase IS66 family E4188_23335 PF13817 IS66 C-terminal element E4188_23335 PF13007 Transposase C of IS166 homeodomain E4188_23335 PF13005 zinc-finger binding domain of transposase IS66 E4188_23345 PF02796 Helix-turn-helix domain of resolvase E4188_23345 PF00239 Resolvase, N terminal domain E4188_23350 PF01636 Phosphotransferase enzyme family E4188_23360 PF00376 MerR family regulatory protein E4188_23360 PF09278 MerR, DNA binding E4188_23365 PF02411 MerT mercuric transport protein E4188_23370 PF00403 Heavy-metal-associated domain E4188_23375 PF07992 Pyridine nucleotide-disulphide oxidoreductase E4188_23375 PF00403 Heavy-metal-associated domain E4188_23375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E4188_23380 PF13411 MerR HTH family regulatory protein E4188_23385 PF05052 MerE protein E4188_23390 PF00563 EAL domain E4188_23390 PF00990 Diguanylate cyclase, GGDEF domain E4188_23390 PF03707 Bacterial signalling protein N terminal repeat E4188_23395 PF00239 Resolvase, N terminal domain E4188_23395 PF02796 Helix-turn-helix domain of resolvase E4188_23400 PF13700 Domain of unknown function (DUF4158) E4188_23400 PF01526 Tn3 transposase DDE domain E4188_23410 PF02909 Tetracyclin repressor-like, C-terminal domain E4188_23410 PF00440 Bacterial regulatory proteins, tetR family E4188_23415 PF07690 Major Facilitator Superfamily E4188_23420 PF00239 Resolvase, N terminal domain E4188_23420 PF02796 Helix-turn-helix domain of resolvase E4188_23435 PF13610 DDE domain E4188_23455 PF00809 Pterin binding enzyme E4188_23460 PF00893 Small Multidrug Resistance protein E4188_23470 PF00132 Bacterial transferase hexapeptide (six repeats) E4188_23475 PF00905 Penicillin binding protein transpeptidase domain E4188_23485 PF00589 Phage integrase family E4188_23485 PF13495 Phage integrase, N-terminal SAM-like domain E4188_23500 PF13700 Domain of unknown function (DUF4158) E4188_23500 PF01526 Tn3 transposase DDE domain E4188_23520 PF00529 HlyD membrane-fusion protein of T1SS E4188_23520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E4188_23525 PF00873 AcrB/AcrD/AcrF family E4188_23530 PF02321 Outer membrane efflux protein E4188_23535 PF11799 impB/mucB/samB family C-terminal domain E4188_23535 PF00817 impB/mucB/samB family E4188_23535 PF13438 Domain of unknown function (DUF4113) E4188_23630 PF00589 Phage integrase family E4188_23630 PF02899 Phage integrase, N-terminal SAM-like domain E4188_23635 PF11740 Plasmid replication region DNA-binding N-term E4188_23650 PF13358 DDE superfamily endonuclease E4188_23650 PF13592 Winged helix-turn helix E4188_23875 PF00437 Type II/IV secretion system protein E4188_23890 PF07655 Secretin N-terminal domain E4188_23890 PF00263 Bacterial type II and III secretion system protein E4188_23920 PF00816 H-NS histone family E4188_23940 PF13005 zinc-finger binding domain of transposase IS66 E4188_23940 PF13007 Transposase C of IS166 homeodomain E4188_23940 PF13817 IS66 C-terminal element E4188_23940 PF03050 Transposase IS66 family E4188_23950 PF17762 HTH domain found in ParB protein E4188_23950 PF02195 ParB-like nuclease domain E4188_23955 PF02767 DNA polymerase III beta subunit, central domain E4188_23955 PF00712 DNA polymerase III beta subunit, N-terminal domain E4188_23955 PF02768 DNA polymerase III beta subunit, C-terminal domain E4188_23995 PF13614 AAA domain E4188_23995 PF18607 ParA helix turn helix domain