locus-tag class description B224_0003 PF04204 Homoserine O-succinyltransferase B224_0005 PF01037 Lrp/AsnC ligand binding domain B224_0007 PF03594 Benzoate membrane transport protein B224_0008 PF01381 Helix-turn-helix B224_0008 PF07883 Cupin domain B224_0011 PF04363 Protein of unknown function (DUF496) B224_0014 PF04751 Protein of unknown function (DUF615) B224_0015 PF01523 Putative modulator of DNA gyrase B224_0016 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B224_0017 PF01722 BolA-like protein B224_0020 PF05494 MlaC protein B224_0023 PF02470 MlaD protein B224_0024 PF02405 Permease MlaE B224_0025 PF00005 ABC transporter B224_0026 PF01380 SIS domain B224_0026 PF00571 CBS domain B224_0028 PF06835 Lipopolysaccharide-assembly, LptC-related B224_0029 PF03968 OstA-like protein B224_0030 PF12399 Branched-chain amino acid ATP-binding cassette transporter B224_0030 PF00005 ABC transporter B224_0032 PF04963 Sigma-54 factor, core binding domain B224_0032 PF00309 Sigma-54 factor, Activator interacting domain (AID) B224_0032 PF04552 Sigma-54, DNA binding domain B224_0033 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein B224_0034 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B224_0035 PF03668 P-loop ATPase protein family B224_0036 PF00381 PTS HPr component phosphorylation site B224_0043 PF13180 PDZ domain B224_0044 PF13180 PDZ domain B224_0044 PF00595 PDZ domain B224_0046 PF03969 AFG1-like ATPase B224_0047 PF00572 Ribosomal protein L13 B224_0048 PF00380 Ribosomal protein S9/S16 B224_0049 PF00355 Rieske [2Fe-2S] domain B224_0049 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal B224_0050 PF00033 Cytochrome b/b6/petB B224_0050 PF00032 Cytochrome b(C-terminal)/b6/petD B224_0053 PF02167 Cytochrome C1 family B224_0054 PF02798 Glutathione S-transferase, N-terminal domain B224_0054 PF00043 Glutathione S-transferase, C-terminal domain B224_0055 PF04386 Stringent starvation protein B B224_0056 PF04972 BON domain B224_0057 PF13580 SIS domain B224_0059 PF02021 Uncharacterised protein family UPF0102 B224_0061 PF04348 LppC putative lipoprotein B224_0062 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B224_0069 PF01609 Transposase DDE domain B224_0069 PF13808 DDE_Tnp_1-associated B224_0074 PF13592 Winged helix-turn helix B224_0074 PF13358 DDE superfamily endonuclease B224_0078 PF02381 MraZ protein, putative antitoxin-like B224_0079 PF01795 MraW methylase family B224_0080 PF04999 Cell division protein FtsL B224_0083 PF00905 Penicillin binding protein transpeptidase domain B224_0083 PF03717 Penicillin-binding Protein dimerisation domain B224_0086 PF02875 Mur ligase family, glutamate ligase domain B224_0086 PF01225 Mur ligase family, catalytic domain B224_0086 PF08245 Mur ligase middle domain B224_0087 PF02875 Mur ligase family, glutamate ligase domain B224_0087 PF01225 Mur ligase family, catalytic domain B224_0087 PF08245 Mur ligase middle domain B224_0088 PF00953 Glycosyl transferase family 4 B224_0088 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 B224_0091 PF08245 Mur ligase middle domain B224_0091 PF02875 Mur ligase family, glutamate ligase domain B224_0093 PF01098 Cell cycle protein B224_0094 PF04101 Glycosyltransferase family 28 C-terminal domain B224_0094 PF03033 Glycosyltransferase family 28 N-terminal domain B224_0096 PF08245 Mur ligase middle domain B224_0096 PF01225 Mur ligase family, catalytic domain B224_0096 PF02875 Mur ligase family, glutamate ligase domain B224_0098 PF03799 Cell division protein FtsQ B224_0098 PF08478 POTRA domain, FtsQ-type B224_0099 PF02491 SHS2 domain inserted in FTSA B224_0101 PF00091 Tubulin/FtsZ family, GTPase domain B224_0101 PF12327 FtsZ family, C-terminal domain B224_0102 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase B224_0104 PF01043 SecA preprotein cross-linking domain B224_0104 PF07516 SecA Wing and Scaffold domain B224_0104 PF02810 SEC-C motif B224_0104 PF07517 SecA DEAD-like domain B224_0106 PF00293 NUDIX domain B224_0107 PF03884 DNA gyrase inhibitor YacG B224_0108 PF07072 Cell division protein B224_0109 PF01121 Dephospho-CoA kinase B224_0111 PF06750 Bacterial Peptidase A24 N-terminal domain B224_0111 PF01478 Type IV leader peptidase family B224_0112 PF00482 Type II secretion system (T2SS), protein F B224_0113 PF00437 Type II/IV secretion system protein B224_0113 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain B224_0114 PF13808 DDE_Tnp_1-associated B224_0114 PF01609 Transposase DDE domain B224_0116 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain B224_0116 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain B224_0118 PF01510 N-acetylmuramoyl-L-alanine amidase B224_0120 PF00392 Bacterial regulatory proteins, gntR family B224_0120 PF07729 FCD domain B224_0121 PF17831 Pyruvate dehydrogenase E1 component middle domain B224_0121 PF00456 Transketolase, thiamine diphosphate binding domain B224_0122 PF00364 Biotin-requiring enzyme B224_0122 PF02817 e3 binding domain B224_0122 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B224_0125 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_0125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B224_0126 PF00990 Diguanylate cyclase, GGDEF domain B224_0126 PF05230 MASE2 domain B224_0130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0130 PF02743 Cache domain B224_0130 PF00672 HAMP domain B224_0131 PF01734 Patatin-like phospholipase B224_0132 PF00330 Aconitase family (aconitate hydratase) B224_0132 PF06434 Aconitate hydratase 2 N-terminus B224_0132 PF11791 Aconitate B N-terminal domain B224_0134 PF00563 EAL domain B224_0134 PF12792 CSS motif domain associated with EAL B224_0135 PF03466 LysR substrate binding domain B224_0135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0136 PF01810 LysE type translocator B224_0140 PF02492 CobW/HypB/UreG, nucleotide-binding domain B224_0140 PF07683 Cobalamin synthesis protein cobW C-terminal domain B224_0144 PF07690 Major Facilitator Superfamily B224_0147 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) B224_0148 PF02152 Dihydroneopterin aldolase B224_0149 PF02660 Glycerol-3-phosphate acyltransferase B224_0151 PF01389 OmpA-like transmembrane domain B224_0151 PF00691 OmpA family B224_0156 PF01609 Transposase DDE domain B224_0166 PF00892 EamA-like transporter family B224_0167 PF01037 Lrp/AsnC ligand binding domain B224_0168 PF13808 DDE_Tnp_1-associated B224_0168 PF01609 Transposase DDE domain B224_0169 PF14602 Hexapeptide repeat of succinyl-transferase B224_0169 PF12464 Maltose acetyltransferase B224_0172 PF00128 Alpha amylase, catalytic domain B224_0172 PF11941 Domain of unknown function (DUF3459) B224_0174 PF00367 phosphotransferase system, EIIB B224_0174 PF02378 Phosphotransferase system, EIIC B224_0176 PF00356 Bacterial regulatory proteins, lacI family B224_0178 PF02378 Phosphotransferase system, EIIC B224_0179 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_0180 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_0180 PF02378 Phosphotransferase system, EIIC B224_0181 PF00232 Glycosyl hydrolase family 1 B224_0183 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit B224_0185 PF00480 ROK family B224_0190 PF00356 Bacterial regulatory proteins, lacI family B224_0193 PF17763 Glutaminase/Asparaginase C-terminal domain B224_0193 PF00710 Asparaginase, N-terminal B224_0194 PF13808 DDE_Tnp_1-associated B224_0194 PF01609 Transposase DDE domain B224_0199 PF02142 MGS-like domain B224_0200 PF00210 Ferritin-like domain B224_0201 PF04324 BFD-like [2Fe-2S] binding domain B224_0205 PF08351 Domain of unknown function (DUF1726) B224_0205 PF13718 GNAT acetyltransferase 2 B224_0205 PF05127 Helicase B224_0205 PF17176 tRNA-binding domain B224_0206 PF00116 Cytochrome C oxidase subunit II, periplasmic domain B224_0206 PF02790 Cytochrome C oxidase subunit II, transmembrane domain B224_0207 PF00115 Cytochrome C and Quinol oxidase polypeptide I B224_0208 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 B224_0209 PF00510 Cytochrome c oxidase subunit III B224_0214 PF02628 Cytochrome oxidase assembly protein B224_0215 PF01040 UbiA prenyltransferase family B224_0217 PF00171 Aldehyde dehydrogenase family B224_0218 PF00528 Binding-protein-dependent transport system inner membrane component B224_0219 PF00528 Binding-protein-dependent transport system inner membrane component B224_0220 PF00005 ABC transporter B224_0220 PF08402 TOBE domain B224_0222 PF13416 Bacterial extracellular solute-binding protein B224_0224 PF03466 LysR substrate binding domain B224_0224 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0226 PF03553 Na+/H+ antiporter family B224_0229 PF00534 Glycosyl transferases group 1 B224_0229 PF08323 Starch synthase catalytic domain B224_0231 PF00483 Nucleotidyl transferase B224_0232 PF08468 Methyltransferase small domain N-terminal B224_0232 PF05175 Methyltransferase small domain B224_0233 PF00701 Dihydrodipicolinate synthetase family B224_0234 PF00360 Phytochrome region B224_0234 PF01590 GAF domain B224_0234 PF00990 Diguanylate cyclase, GGDEF domain B224_0234 PF00563 EAL domain B224_0236 PF13419 Haloacid dehalogenase-like hydrolase B224_0237 PF17209 Hfq protein B224_0238 PF04403 Paraquat-inducible protein A B224_0240 PF02470 MlaD protein B224_0241 PF03886 ABC-type transport auxiliary lipoprotein component B224_0242 PF01389 OmpA-like transmembrane domain B224_0242 PF00691 OmpA family B224_0243 PF00657 GDSL-like Lipase/Acylhydrolase B224_0246 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain B224_0246 PF01464 Transglycosylase SLT domain B224_0247 PF04362 Bacterial Fe(2+) trafficking B224_0248 PF00633 Helix-hairpin-helix motif B224_0248 PF14815 NUDIX domain B224_0248 PF10576 Iron-sulfur binding domain of endonuclease III B224_0248 PF00730 HhH-GPD superfamily base excision DNA repair protein B224_0249 PF16537 Type II secretion system protein B B224_0251 PF13401 AAA domain B224_0251 PF01471 Putative peptidoglycan binding domain B224_0253 PF01966 HD domain B224_0253 PF12627 Probable RNA and SrmB- binding site of polymerase A B224_0253 PF01743 Poly A polymerase head domain B224_0255 PF01384 Phosphate transporter family B224_0256 PF01865 Protein of unknown function DUF47 B224_0260 PF05433 Glycine zipper 2TM domain B224_0263 PF00557 Metallopeptidase family M24 B224_0263 PF01321 Creatinase/Prolidase N-terminal domain B224_0264 PF00392 Bacterial regulatory proteins, gntR family B224_0266 PF01293 Phosphoenolpyruvate carboxykinase B224_0267 PF01430 Hsp33 protein B224_0269 PF01479 S4 domain B224_0270 PF11356 Type II secretion system protein C B224_0272 PF03958 Bacterial type II/III secretion system short domain B224_0272 PF00263 Bacterial type II and III secretion system protein B224_0274 PF00437 Type II/IV secretion system protein B224_0275 PF00482 Type II secretion system (T2SS), protein F B224_0276 PF07963 Prokaryotic N-terminal methylation motif B224_0276 PF08334 Type II secretion system (T2SS), protein G B224_0277 PF12019 Type II transport protein GspH B224_0277 PF07963 Prokaryotic N-terminal methylation motif B224_0278 PF07963 Prokaryotic N-terminal methylation motif B224_0278 PF02501 Type II secretion system (T2SS), protein I B224_0279 PF11612 Type II secretion system (T2SS), protein J B224_0279 PF07963 Prokaryotic N-terminal methylation motif B224_0282 PF03934 Type II secretion system (T2SS), protein K B224_0285 PF05134 Type II secretion system (T2SS), protein L B224_0285 PF12693 GspL periplasmic domain B224_0286 PF04612 Type II secretion system (T2SS), protein M B224_0287 PF01203 Type II secretion system (T2SS), protein N B224_0289 PF00196 Bacterial regulatory proteins, luxR family B224_0290 PF00579 tRNA synthetases class I (W and Y) B224_0290 PF01479 S4 domain B224_0291 PF13737 Transposase DDE domain B224_0293 PF01479 S4 domain B224_0293 PF00579 tRNA synthetases class I (W and Y) B224_0295 PF13419 Haloacid dehalogenase-like hydrolase B224_0296 PF00293 NUDIX domain B224_0297 PF00459 Inositol monophosphatase family B224_0298 PF03222 Tryptophan/tyrosine permease family B224_0300 PF01588 Putative tRNA binding domain B224_0302 PF12833 Helix-turn-helix domain B224_0302 PF02311 AraC-like ligand binding domain B224_0303 PF01340 Met Apo-repressor, MetJ B224_0304 PF01053 Cys/Met metabolism PLP-dependent enzyme B224_0306 PF00742 Homoserine dehydrogenase B224_0306 PF00696 Amino acid kinase family B224_0306 PF03447 Homoserine dehydrogenase, NAD binding domain B224_0308 PF04172 LrgB-like family B224_0309 PF03788 LrgA family B224_0310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0310 PF03466 LysR substrate binding domain B224_0314 PF00155 Aminotransferase class I and II B224_0314 PF00392 Bacterial regulatory proteins, gntR family B224_0318 PF04073 Aminoacyl-tRNA editing domain B224_0320 PF13426 PAS domain B224_0320 PF00563 EAL domain B224_0320 PF05231 MASE1 B224_0320 PF08447 PAS fold B224_0320 PF08448 PAS fold B224_0320 PF00990 Diguanylate cyclase, GGDEF domain B224_0323 PF00311 Phosphoenolpyruvate carboxylase B224_0325 PF07687 Peptidase dimerisation domain B224_0325 PF01546 Peptidase family M20/M25/M40 B224_0326 PF01118 Semialdehyde dehydrogenase, NAD binding domain B224_0326 PF02774 Semialdehyde dehydrogenase, dimerisation domain B224_0327 PF00696 Amino acid kinase family B224_0329 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B224_0329 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B224_0330 PF00764 Arginosuccinate synthase B224_0332 PF14698 Argininosuccinate lyase C-terminal B224_0332 PF00206 Lyase B224_0335 PF01609 Transposase DDE domain B224_0335 PF05598 Transposase domain (DUF772) B224_0337 PF13737 Transposase DDE domain B224_0342 PF14602 Hexapeptide repeat of succinyl-transferase B224_0342 PF12464 Maltose acetyltransferase B224_0344 PF13194 Domain of unknown function (DUF4010) B224_0345 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain B224_0345 PF00326 Prolyl oligopeptidase family B224_0352 PF08335 GlnD PII-uridylyltransferase B224_0352 PF03710 Glutamate-ammonia ligase adenylyltransferase B224_0354 PF00672 HAMP domain B224_0354 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0356 PF00027 Cyclic nucleotide-binding domain B224_0356 PF00520 Ion transport protein B224_0357 PF08239 Bacterial SH3 domain B224_0358 PF00293 NUDIX domain B224_0358 PF09297 NADH pyrophosphatase zinc ribbon domain B224_0359 PF01208 Uroporphyrinogen decarboxylase (URO-D) B224_0361 PF00480 ROK family B224_0362 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain B224_0362 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_0363 PF00162 Phosphoglycerate kinase B224_0365 PF01116 Fructose-bisphosphate aldolase class-II B224_0366 PF01266 FAD dependent oxidoreductase B224_0368 PF11412 Disulphide bond corrector protein DsbC B224_0368 PF02683 Cytochrome C biogenesis protein transmembrane region B224_0369 PF03091 CutA1 divalent ion tolerance protein B224_0374 PF03466 LysR substrate binding domain B224_0374 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0375 PF01571 Aminomethyltransferase folate-binding domain B224_0376 PF03937 Flavinator of succinate dehydrogenase B224_0379 PF00890 FAD binding domain B224_0379 PF02910 Fumarate reductase flavoprotein C-term B224_0380 PF08281 Sigma-70, region 4 B224_0380 PF04542 Sigma-70 region 2 B224_0381 PF03873 Anti sigma-E protein RseA, C-terminal domain B224_0381 PF03872 Anti sigma-E protein RseA, N-terminal domain B224_0383 PF03888 MucB/RseB N-terminal domain B224_0383 PF17188 MucB/RseB C-terminal domain B224_0385 PF00679 Elongation factor G C-terminus B224_0385 PF03144 Elongation factor Tu domain 2 B224_0385 PF00009 Elongation factor Tu GTP binding domain B224_0385 PF06421 GTP-binding protein LepA C-terminus B224_0387 PF10502 Signal peptidase, peptidase S26 B224_0388 PF00035 Double-stranded RNA binding motif B224_0388 PF14622 Ribonuclease-III-like B224_0389 PF07650 KH domain B224_0389 PF01926 50S ribosome-binding GTPase B224_0390 PF11967 Recombination protein O N terminal B224_0390 PF02565 Recombination protein O C terminal B224_0391 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ B224_0392 PF01510 N-acetylmuramoyl-L-alanine amidase B224_0393 PF07308 Protein of unknown function (DUF1456) B224_0394 PF00672 HAMP domain B224_0394 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) B224_0394 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_0394 PF00512 His Kinase A (phospho-acceptor) domain B224_0394 PF01627 Hpt domain B224_0394 PF00072 Response regulator receiver domain B224_0396 PF01938 TRAM domain B224_0396 PF05958 tRNA (Uracil-5-)-methyltransferase B224_0399 PF04607 Region found in RelA / SpoT proteins B224_0399 PF13291 ACT domain B224_0399 PF02824 TGS domain B224_0401 PF03819 MazG nucleotide pyrophosphohydrolase domain B224_0403 PF06418 CTP synthase N-terminus B224_0403 PF00117 Glutamine amidotransferase class-I B224_0405 PF03952 Enolase, N-terminal domain B224_0405 PF00113 Enolase, C-terminal TIM barrel domain B224_0407 PF04977 Septum formation initiator B224_0408 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase B224_0409 PF02542 YgbB family B224_0411 PF01142 tRNA pseudouridine synthase D (TruD) B224_0412 PF01975 Survival protein SurE B224_0414 PF09335 SNARE associated Golgi protein B224_0415 PF01476 LysM domain B224_0415 PF01551 Peptidase family M23 B224_0416 PF01609 Transposase DDE domain B224_0416 PF05598 Transposase domain (DUF772) B224_0418 PF04542 Sigma-70 region 2 B224_0418 PF04539 Sigma-70 region 3 B224_0418 PF00140 Sigma-70 factor, region 1.2 B224_0418 PF04545 Sigma-70, region 4 B224_0419 PF00814 Glycoprotease family B224_0420 PF01165 Ribosomal protein S21 B224_0421 PF09424 Yqey-like protein B224_0423 PF01807 CHC2 zinc finger B224_0423 PF08275 DNA primase catalytic core, N-terminal domain B224_0423 PF08278 DNA primase DnaG DnaB-binding B224_0423 PF10410 DnaB-helicase binding domain of primase B224_0424 PF04545 Sigma-70, region 4 B224_0424 PF04539 Sigma-70 region 3 B224_0424 PF03979 Sigma-70 factor, region 1.1 B224_0424 PF00140 Sigma-70 factor, region 1.2 B224_0424 PF04546 Sigma-70, non-essential region B224_0424 PF04542 Sigma-70 region 2 B224_0427 PF00128 Alpha amylase, catalytic domain B224_0432 PF02843 Phosphoribosylglycinamide synthetase, C domain B224_0432 PF02844 Phosphoribosylglycinamide synthetase, N domain B224_0432 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain B224_0434 PF02142 MGS-like domain B224_0434 PF01808 AICARFT/IMPCHase bienzyme B224_0435 PF13006 Insertion element 4 transposase N-terminal B224_0435 PF01609 Transposase DDE domain B224_0436 PF13411 MerR HTH family regulatory protein B224_0438 PF03889 Alternative ribosome-rescue factor A B224_0440 PF06969 HemN C-terminal domain B224_0440 PF04055 Radical SAM superfamily B224_0441 PF01725 Ham1 family B224_0443 PF07690 Major Facilitator Superfamily B224_0445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B224_0445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B224_0448 PF01957 NfeD-like C-terminal, partner-binding B224_0449 PF16200 C-terminal region of band_7 B224_0449 PF01145 SPFH domain / Band 7 family B224_0450 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B224_0450 PF14824 Sirohaem biosynthesis protein central B224_0450 PF10414 Sirohaem synthase dimerisation region B224_0452 PF01507 Phosphoadenosine phosphosulfate reductase family B224_0454 PF00009 Elongation factor Tu GTP binding domain B224_0455 PF03600 Citrate transporter B224_0455 PF02080 TrkA-C domain B224_0458 PF01609 Transposase DDE domain B224_0458 PF05598 Transposase domain (DUF772) B224_0459 PF01609 Transposase DDE domain B224_0460 PF01609 Transposase DDE domain B224_0460 PF05598 Transposase domain (DUF772) B224_0463 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0463 PF08447 PAS fold B224_0468 PF00005 ABC transporter B224_0472 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) B224_0475 PF00719 Inorganic pyrophosphatase B224_0476 PF01225 Mur ligase family, catalytic domain B224_0476 PF08245 Mur ligase middle domain B224_0476 PF02875 Mur ligase family, glutamate ligase domain B224_0477 PF02441 Flavoprotein B224_0479 PF00440 Bacterial regulatory proteins, tetR family B224_0480 PF00156 Phosphoribosyl transferase domain B224_0481 PF00005 ABC transporter B224_0482 PF01061 ABC-2 type transporter B224_0485 PF02569 Pantoate-beta-alanine ligase B224_0486 PF02548 Ketopantoate hydroxymethyltransferase B224_0487 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) B224_0489 PF01743 Poly A polymerase head domain B224_0489 PF12626 Polymerase A arginine-rich C-terminus B224_0489 PF12627 Probable RNA and SrmB- binding site of polymerase A B224_0491 PF00749 tRNA synthetases class I (E and Q), catalytic domain B224_0492 PF01258 Prokaryotic dksA/traR C4-type zinc finger B224_0497 PF17746 SfsA N-terminal OB domain B224_0497 PF03749 Sugar fermentation stimulation protein RE domain B224_0498 PF02834 LigT like Phosphoesterase B224_0499 PF08482 ATP-dependent helicase C-terminal B224_0499 PF00271 Helicase conserved C-terminal domain B224_0499 PF04408 Helicase associated domain (HA2) B224_0499 PF00270 DEAD/DEAH box helicase B224_0501 PF14814 Bifunctional transglycosylase second domain B224_0501 PF00912 Transglycosylase B224_0501 PF00905 Penicillin binding protein transpeptidase domain B224_0502 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_0504 PF00893 Small Multidrug Resistance protein B224_0506 PF00893 Small Multidrug Resistance protein B224_0507 PF03466 LysR substrate binding domain B224_0507 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0509 PF01569 PAP2 superfamily B224_0513 PF00202 Aminotransferase class-III B224_0515 PF00654 Voltage gated chloride channel B224_0518 PF01521 Iron-sulphur cluster biosynthesis B224_0521 PF01810 LysE type translocator B224_0522 PF02954 Bacterial regulatory protein, Fis family B224_0523 PF01207 Dihydrouridine synthase (Dus) B224_0526 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_0536 PF00072 Response regulator receiver domain B224_0538 PF00854 POT family B224_0539 PF00483 Nucleotidyl transferase B224_0541 PF00459 Inositol monophosphatase family B224_0542 PF03795 YCII-related domain B224_0544 PF04279 Intracellular septation protein A B224_0545 PF00282 Pyridoxal-dependent decarboxylase conserved domain B224_0547 PF03006 Haemolysin-III related B224_0549 PF06826 Predicted Permease Membrane Region B224_0549 PF02080 TrkA-C domain B224_0556 PF05598 Transposase domain (DUF772) B224_0556 PF01609 Transposase DDE domain B224_0557 PF13808 DDE_Tnp_1-associated B224_0557 PF01609 Transposase DDE domain B224_0559 PF01609 Transposase DDE domain B224_0559 PF13006 Insertion element 4 transposase N-terminal B224_0561 PF00474 Sodium:solute symporter family B224_0563 PF17969 L,D-transpeptidase C-terminal domain B224_0563 PF03734 L,D-transpeptidase catalytic domain B224_0565 PF00924 Mechanosensitive ion channel B224_0566 PF00871 Acetokinase family B224_0568 PF04074 YhcH/YjgK/YiaL B224_0571 PF13302 Acetyltransferase (GNAT) domain B224_0572 PF13302 Acetyltransferase (GNAT) domain B224_0573 PF07504 Fungalysin/Thermolysin Propeptide Motif B224_0573 PF03413 Peptidase propeptide and YPEB domain B224_0573 PF04151 Bacterial pre-peptidase C-terminal domain B224_0573 PF01447 Thermolysin metallopeptidase, catalytic domain B224_0573 PF02868 Thermolysin metallopeptidase, alpha-helical domain B224_0577 PF01609 Transposase DDE domain B224_0577 PF13808 DDE_Tnp_1-associated B224_0578 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0578 PF03466 LysR substrate binding domain B224_0580 PF07690 Major Facilitator Superfamily B224_0592 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ B224_0595 PF00005 ABC transporter B224_0595 PF12848 ABC transporter B224_0596 PF00571 CBS domain B224_0597 PF13358 DDE superfamily endonuclease B224_0597 PF13592 Winged helix-turn helix B224_0598 PF01609 Transposase DDE domain B224_0598 PF05598 Transposase domain (DUF772) B224_0599 PF00267 Gram-negative porin B224_0603 PF13472 GDSL-like Lipase/Acylhydrolase family B224_0604 PF00005 ABC transporter B224_0607 PF08338 Domain of unknown function (DUF1731) B224_0607 PF01370 NAD dependent epimerase/dehydratase family B224_0610 PF00563 EAL domain B224_0610 PF12792 CSS motif domain associated with EAL B224_0613 PF00155 Aminotransferase class I and II B224_0614 PF01483 Proprotein convertase P-domain B224_0614 PF04389 Peptidase family M28 B224_0616 PF02390 Putative methyltransferase B224_0617 PF04320 Protein with unknown function (DUF469) B224_0619 PF04960 Glutaminase B224_0620 PF00581 Rhodanese-like domain B224_0623 PF06004 Bacterial protein of unknown function (DUF903) B224_0625 PF00005 ABC transporter B224_0625 PF00664 ABC transporter transmembrane region B224_0627 PF00561 alpha/beta hydrolase fold B224_0633 PF01609 Transposase DDE domain B224_0633 PF05598 Transposase domain (DUF772) B224_0635 PF00356 Bacterial regulatory proteins, lacI family B224_0636 PF04193 PQ loop repeat B224_0637 PF01263 Aldose 1-epimerase B224_0638 PF08544 GHMP kinases C terminal B224_0638 PF10509 Galactokinase galactose-binding signature B224_0638 PF00288 GHMP kinases N terminal domain B224_0640 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain B224_0640 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain B224_0641 PF16363 GDP-mannose 4,6 dehydratase B224_0643 PF00801 PKD domain B224_0643 PF05547 Immune inhibitor A peptidase M6 B224_0644 PF06877 Regulator of ribonuclease activity B B224_0645 PF13006 Insertion element 4 transposase N-terminal B224_0645 PF01609 Transposase DDE domain B224_0647 PF00360 Phytochrome region B224_0647 PF00563 EAL domain B224_0647 PF01590 GAF domain B224_0647 PF00990 Diguanylate cyclase, GGDEF domain B224_0651 PF00990 Diguanylate cyclase, GGDEF domain B224_0651 PF08448 PAS fold B224_0653 PF12833 Helix-turn-helix domain B224_0653 PF12852 Cupin B224_0654 PF02627 Carboxymuconolactone decarboxylase family B224_0658 PF09905 DNA-binding protein VF530 B224_0659 PF02666 Phosphatidylserine decarboxylase B224_0661 PF03193 RsgA GTPase B224_0662 PF00929 Exonuclease B224_0663 PF00313 'Cold-shock' DNA-binding domain B224_0666 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0666 PF00672 HAMP domain B224_0668 PF00749 tRNA synthetases class I (E and Q), catalytic domain B224_0669 PF00749 tRNA synthetases class I (E and Q), catalytic domain B224_0671 PF00704 Glycosyl hydrolases family 18 B224_0671 PF06483 Chitinase C B224_0677 PF02472 Biopolymer transport protein ExbD/TolR B224_0680 PF01618 MotA/TolQ/ExbB proton channel family B224_0681 PF01618 MotA/TolQ/ExbB proton channel family B224_0684 PF00593 TonB dependent receptor B224_0684 PF07715 TonB-dependent Receptor Plug Domain B224_0688 PF13808 DDE_Tnp_1-associated B224_0688 PF01609 Transposase DDE domain B224_0691 PF00528 Binding-protein-dependent transport system inner membrane component B224_0692 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_0692 PF00528 Binding-protein-dependent transport system inner membrane component B224_0693 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_0695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_0695 PF00005 ABC transporter B224_0696 PF00005 ABC transporter B224_0696 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_0699 PF01546 Peptidase family M20/M25/M40 B224_0699 PF07687 Peptidase dimerisation domain B224_0701 PF00156 Phosphoribosyl transferase domain B224_0704 PF07417 Sigma factor-binding transcriptional regulator Crl B224_0707 PF01472 PUA domain B224_0707 PF00696 Amino acid kinase family B224_0709 PF00171 Aldehyde dehydrogenase family B224_0712 PF00582 Universal stress protein family B224_0717 PF01568 Molydopterin dinucleotide binding domain B224_0717 PF04324 BFD-like [2Fe-2S] binding domain B224_0717 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B224_0717 PF00384 Molybdopterin oxidoreductase B224_0718 PF10414 Sirohaem synthase dimerisation region B224_0718 PF14824 Sirohaem biosynthesis protein central B224_0718 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B224_0721 PF00005 ABC transporter B224_0723 PF00528 Binding-protein-dependent transport system inner membrane component B224_0724 PF00005 ABC transporter B224_0726 PF04324 BFD-like [2Fe-2S] binding domain B224_0726 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_0726 PF18267 Rubredoxin NAD+ reductase C-terminal domain B224_0726 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B224_0726 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B224_0726 PF13806 Rieske-like [2Fe-2S] domain B224_0728 PF18267 Rubredoxin NAD+ reductase C-terminal domain B224_0728 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B224_0728 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B224_0728 PF13806 Rieske-like [2Fe-2S] domain B224_0728 PF04324 BFD-like [2Fe-2S] binding domain B224_0728 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_0730 PF00294 pfkB family carbohydrate kinase B224_0731 PF04227 Indigoidine synthase A like protein B224_0733 PF00194 Eukaryotic-type carbonic anhydrase B224_0735 PF01609 Transposase DDE domain B224_0735 PF13808 DDE_Tnp_1-associated B224_0739 PF02801 Beta-ketoacyl synthase, C-terminal domain B224_0739 PF00109 Beta-ketoacyl synthase, N-terminal domain B224_0742 PF00994 Probable molybdopterin binding domain B224_0743 PF01609 Transposase DDE domain B224_0747 PF06738 Putative threonine/serine exporter B224_0749 PF12821 Threonine/Serine exporter, ThrE B224_0750 PF00186 Dihydrofolate reductase B224_0752 PF00571 CBS domain B224_0752 PF00005 ABC transporter B224_0753 PF00528 Binding-protein-dependent transport system inner membrane component B224_0755 PF04069 Substrate binding domain of ABC-type glycine betaine transport system B224_0756 PF01507 Phosphoadenosine phosphosulfate reductase family B224_0758 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B224_0758 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B224_0760 PF00258 Flavodoxin B224_0760 PF00667 FAD binding domain B224_0760 PF00175 Oxidoreductase NAD-binding domain B224_0761 PF02567 Phenazine biosynthesis-like protein B224_0762 PF00152 tRNA synthetases class II (D, K and N) B224_0762 PF01336 OB-fold nucleic acid binding domain B224_0764 PF00472 RF-1 domain B224_0764 PF03462 PCRF domain B224_0766 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0766 PF02743 Cache domain B224_0766 PF00672 HAMP domain B224_0768 PF13426 PAS domain B224_0768 PF00563 EAL domain B224_0768 PF00990 Diguanylate cyclase, GGDEF domain B224_0771 PF03616 Sodium/glutamate symporter B224_0772 PF17763 Glutaminase/Asparaginase C-terminal domain B224_0772 PF00710 Asparaginase, N-terminal B224_0773 PF07023 Protein of unknown function (DUF1315) B224_0775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_0775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain B224_0778 PF01343 Peptidase family S49 B224_0781 PF00724 NADH:flavin oxidoreductase / NADH oxidase family B224_0781 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_0783 PF00881 Nitroreductase family B224_0784 PF14602 Hexapeptide repeat of succinyl-transferase B224_0784 PF12464 Maltose acetyltransferase B224_0787 PF08240 Alcohol dehydrogenase GroES-like domain B224_0787 PF00107 Zinc-binding dehydrogenase B224_0788 PF03466 LysR substrate binding domain B224_0788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0789 PF00367 phosphotransferase system, EIIB B224_0789 PF02378 Phosphotransferase system, EIIC B224_0789 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B224_0791 PF00474 Sodium:solute symporter family B224_0792 PF06196 Protein of unknown function (DUF997) B224_0793 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B224_0793 PF00289 Biotin carboxylase, N-terminal domain B224_0793 PF02785 Biotin carboxylase C-terminal domain B224_0795 PF00364 Biotin-requiring enzyme B224_0796 PF01220 Dehydroquinase class II B224_0798 PF13193 AMP-binding enzyme C-terminal domain B224_0798 PF00501 AMP-binding enzyme B224_0798 PF16177 Acetyl-coenzyme A synthetase N-terminus B224_0801 PF00563 EAL domain B224_0801 PF03707 Bacterial signalling protein N terminal repeat B224_0801 PF00990 Diguanylate cyclase, GGDEF domain B224_0804 PF02613 Nitrate reductase delta subunit B224_0807 PF01568 Molydopterin dinucleotide binding domain B224_0807 PF18364 Molybdopterin oxidoreductase N-terminal domain B224_0807 PF00384 Molybdopterin oxidoreductase B224_0808 PF03264 NapC/NirT cytochrome c family, N-terminal region B224_0809 PF00072 Response regulator receiver domain B224_0809 PF00486 Transcriptional regulatory protein, C terminal B224_0811 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family B224_0812 PF01627 Hpt domain B224_0812 PF00072 Response regulator receiver domain B224_0812 PF00672 HAMP domain B224_0812 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_0812 PF00512 His Kinase A (phospho-acceptor) domain B224_0815 PF00464 Serine hydroxymethyltransferase B224_0817 PF03477 ATP cone domain B224_0818 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B224_0818 PF01872 RibD C-terminal domain B224_0820 PF00677 Lumazine binding domain B224_0822 PF00925 GTP cyclohydrolase II B224_0822 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase B224_0824 PF00885 6,7-dimethyl-8-ribityllumazine synthase B224_0825 PF01029 NusB family B224_0826 PF00586 AIR synthase related protein, N-terminal domain B224_0826 PF02769 AIR synthase related protein, C-terminal domain B224_0827 PF04608 Phosphatidylglycerophosphatase A B224_0829 PF00005 ABC transporter B224_0829 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_0832 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_0834 PF00528 Binding-protein-dependent transport system inner membrane component B224_0834 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_0836 PF13292 1-deoxy-D-xylulose-5-phosphate synthase B224_0836 PF02779 Transketolase, pyrimidine binding domain B224_0836 PF02780 Transketolase, C-terminal domain B224_0838 PF00348 Polyprenyl synthetase B224_0840 PF02609 Exonuclease VII small subunit B224_0842 PF01618 MotA/TolQ/ExbB proton channel family B224_0843 PF13677 Membrane MotB of proton-channel complex MotA/MotB B224_0843 PF00691 OmpA family B224_0844 PF01272 Transcription elongation factor, GreA/GreB, C-term B224_0844 PF03449 Transcription elongation factor, N-terminal B224_0846 PF01985 CRS1 / YhbY (CRM) domain B224_0847 PF01728 FtsJ-like methyltransferase B224_0848 PF17862 AAA+ lid domain B224_0848 PF06480 FtsH Extracellular B224_0848 PF01434 Peptidase family M41 B224_0848 PF00004 ATPase family associated with various cellular activities (AAA) B224_0850 PF00809 Pterin binding enzyme B224_0852 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III B224_0852 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain B224_0852 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I B224_0852 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II B224_0854 PF00121 Triosephosphate isomerase B224_0855 PF03840 Preprotein translocase SecG subunit B224_0856 PF02576 RimP N-terminal domain B224_0856 PF17384 RimP C-terminal SH3 domain B224_0857 PF00575 S1 RNA binding domain B224_0857 PF13184 NusA-like KH domain B224_0857 PF08529 NusA N-terminal domain B224_0860 PF00009 Elongation factor Tu GTP binding domain B224_0860 PF11987 Translation-initiation factor 2 B224_0860 PF08364 Bacterial translation initiation factor IF-2 associated region B224_0860 PF04760 Translation initiation factor IF-2, N-terminal region B224_0861 PF02033 Ribosome-binding factor A B224_0862 PF16198 tRNA pseudouridylate synthase B C-terminal domain B224_0862 PF01509 TruB family pseudouridylate synthase (N terminal domain) B224_0862 PF09157 Pseudouridine synthase II TruB, C-terminal B224_0864 PF00312 Ribosomal protein S15 B224_0865 PF03725 3' exoribonuclease family, domain 2 B224_0865 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain B224_0865 PF00013 KH domain B224_0865 PF00575 S1 RNA binding domain B224_0865 PF01138 3' exoribonuclease family, domain 1 B224_0869 PF02635 DsrE/DsrF-like family B224_0871 PF12838 4Fe-4S dicluster domain B224_0874 PF03734 L,D-transpeptidase catalytic domain B224_0874 PF17969 L,D-transpeptidase C-terminal domain B224_0877 PF01523 Putative modulator of DNA gyrase B224_0879 PF01523 Putative modulator of DNA gyrase B224_0880 PF00258 Flavodoxin B224_0881 PF00589 Phage integrase family B224_0881 PF02899 Phage integrase, N-terminal SAM-like domain B224_0888 PF00579 tRNA synthetases class I (W and Y) B224_0890 PF13419 Haloacid dehalogenase-like hydrolase B224_0891 PF00834 Ribulose-phosphate 3 epimerase family B224_0892 PF02086 D12 class N6 adenine-specific DNA methyltransferase B224_0895 PF01761 3-dehydroquinate synthase B224_0897 PF01202 Shikimate kinase B224_0905 PF00912 Transglycosylase B224_0905 PF17092 Penicillin-binding protein OB-like domain B224_0905 PF00905 Penicillin binding protein transpeptidase domain B224_0907 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0907 PF03466 LysR substrate binding domain B224_0910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0910 PF03466 LysR substrate binding domain B224_0914 PF02753 Pili assembly chaperone PapD, C-terminal domain B224_0914 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain B224_0917 PF00577 Outer membrane usher protein B224_0917 PF13954 PapC N-terminal domain B224_0917 PF13953 PapC C-terminal domain B224_0918 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain B224_0918 PF02753 Pili assembly chaperone PapD, C-terminal domain B224_0921 PF01476 LysM domain B224_0921 PF08525 Opacity-associated protein A N-terminal motif B224_0921 PF01551 Peptidase family M23 B224_0925 PF12794 Mechanosensitive ion channel inner membrane domain 1 B224_0925 PF00924 Mechanosensitive ion channel B224_0925 PF12795 Mechanosensitive ion channel porin domain B224_0927 PF03009 Glycerophosphoryl diester phosphodiesterase family B224_0929 PF00672 HAMP domain B224_0929 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_0929 PF02743 Cache domain B224_0930 PF00890 FAD binding domain B224_0930 PF02910 Fumarate reductase flavoprotein C-term B224_0932 PF13085 2Fe-2S iron-sulfur cluster binding domain B224_0932 PF13183 4Fe-4S dicluster domain B224_0933 PF02300 Fumarate reductase subunit C B224_0934 PF02313 Fumarate reductase subunit D B224_0936 PF06224 Winged helix DNA-binding domain B224_0937 PF13649 Methyltransferase domain B224_0939 PF00501 AMP-binding enzyme B224_0941 PF00106 short chain dehydrogenase B224_0943 PF00072 Response regulator receiver domain B224_0943 PF00486 Transcriptional regulatory protein, C terminal B224_0944 PF00512 His Kinase A (phospho-acceptor) domain B224_0944 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_0944 PF08521 Two-component sensor kinase N-terminal B224_0947 PF00478 IMP dehydrogenase / GMP reductase domain B224_0951 PF01132 Elongation factor P (EF-P) OB domain B224_0951 PF08207 Elongation factor P (EF-P) KOW-like domain B224_0951 PF09285 Elongation factor P, C-terminal B224_0952 PF09997 Predicted membrane protein (DUF2238) B224_0955 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B224_0955 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B224_0958 PF00990 Diguanylate cyclase, GGDEF domain B224_0958 PF07694 5TMR of 5TMR-LYT B224_0962 PF17151 Periplasmic sensor domain B224_0962 PF00990 Diguanylate cyclase, GGDEF domain B224_0963 PF13419 Haloacid dehalogenase-like hydrolase B224_0965 PF03466 LysR substrate binding domain B224_0965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_0966 PF00313 'Cold-shock' DNA-binding domain B224_0968 PF01494 FAD binding domain B224_0969 PF00919 Uncharacterized protein family UPF0004 B224_0969 PF01938 TRAM domain B224_0969 PF04055 Radical SAM superfamily B224_0970 PF02562 PhoH-like protein B224_0972 PF02130 Uncharacterized protein family UPF0054 B224_0973 PF00571 CBS domain B224_0973 PF03471 Transporter associated domain B224_0975 PF00795 Carbon-nitrogen hydrolase B224_0977 PF07295 Zinc-ribbon containing domain B224_0979 PF08264 Anticodon-binding domain of tRNA B224_0979 PF00133 tRNA synthetases class I (I, L, M and V) B224_0979 PF13603 Leucyl-tRNA synthetase, Domain 2 B224_0985 PF01467 Cytidylyltransferase-like B224_0988 PF02590 Predicted SPOUT methyltransferase B224_0989 PF00905 Penicillin binding protein transpeptidase domain B224_0989 PF03717 Penicillin-binding Protein dimerisation domain B224_0991 PF01098 Cell cycle protein B224_0992 PF13406 Transglycosylase SLT domain B224_0993 PF05036 Sporulation related domain B224_0993 PF03330 Lytic transglycolase B224_0994 PF00768 D-alanyl-D-alanine carboxypeptidase B224_0994 PF07943 Penicillin-binding protein 5, C-terminal domain B224_0996 PF04359 Protein of unknown function (DUF493) B224_0997 PF03099 Biotin/lipoate A/B protein ligase family B224_0998 PF04055 Radical SAM superfamily B224_0998 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family B224_1001 PF02508 Rnf-Nqr subunit, membrane protein B224_1005 PF02272 DHHA1 domain B224_1005 PF01368 DHH family B224_1005 PF17768 RecJ OB domain B224_1006 PF00158 Sigma-54 interaction domain B224_1006 PF00072 Response regulator receiver domain B224_1006 PF02954 Bacterial regulatory protein, Fis family B224_1010 PF01741 Large-conductance mechanosensitive channel, MscL B224_1016 PF00117 Glutamine amidotransferase class-I B224_1017 PF00202 Aminotransferase class-III B224_1019 PF04958 Arginine N-succinyltransferase beta subunit B224_1021 PF00171 Aldehyde dehydrogenase family B224_1024 PF13419 Haloacid dehalogenase-like hydrolase B224_1026 PF07690 Major Facilitator Superfamily B224_1028 PF07859 alpha/beta hydrolase fold B224_1032 PF02080 TrkA-C domain B224_1032 PF03600 Citrate transporter B224_1033 PF06071 Protein of unknown function (DUF933) B224_1033 PF01926 50S ribosome-binding GTPase B224_1035 PF01195 Peptidyl-tRNA hydrolase B224_1036 PF00149 Calcineurin-like phosphoesterase B224_1036 PF02872 5'-nucleotidase, C-terminal domain B224_1038 PF14572 Phosphoribosyl synthetase-associated domain B224_1038 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase B224_1040 PF03550 Outer membrane lipoprotein LolB B224_1042 PF01488 Shikimate / quinate 5-dehydrogenase B224_1042 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain B224_1042 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain B224_1043 PF03462 PCRF domain B224_1043 PF00472 RF-1 domain B224_1044 PF17827 PrmC N-terminal domain B224_1044 PF13847 Methyltransferase domain B224_1047 PF13369 Transglutaminase-like superfamily B224_1048 PF00793 DAHP synthetase I family B224_1049 PF00375 Sodium:dicarboxylate symporter family B224_1050 PF01228 Glycine radical B224_1051 PF03167 Uracil DNA glycosylase superfamily B224_1053 PF13006 Insertion element 4 transposase N-terminal B224_1053 PF01609 Transposase DDE domain B224_1057 PF01609 Transposase DDE domain B224_1057 PF13808 DDE_Tnp_1-associated B224_1058 PF00923 Transaldolase/Fructose-6-phosphate aldolase B224_1060 PF01235 Sodium:alanine symporter family B224_1061 PF00144 Beta-lactamase B224_1063 PF07690 Major Facilitator Superfamily B224_1065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1065 PF03466 LysR substrate binding domain B224_1066 PF03652 Holliday junction resolvase B224_1067 PF02622 Uncharacterized ACR, COG1678 B224_1068 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain B224_1068 PF02951 Prokaryotic glutathione synthetase, N-terminal domain B224_1070 PF04452 RNA methyltransferase B224_1071 PF04231 Endonuclease I B224_1072 PF10263 SprT-like family B224_1073 PF02772 S-adenosylmethionine synthetase, central domain B224_1073 PF02773 S-adenosylmethionine synthetase, C-terminal domain B224_1073 PF00438 S-adenosylmethionine synthetase, N-terminal domain B224_1074 PF02779 Transketolase, pyrimidine binding domain B224_1074 PF02780 Transketolase, C-terminal domain B224_1074 PF00456 Transketolase, thiamine diphosphate binding domain B224_1076 PF01527 Transposase B224_1077 PF13683 Integrase core domain B224_1077 PF13276 HTH-like domain B224_1083 PF03702 Anhydro-N-acetylmuramic acid kinase B224_1085 PF01476 LysM domain B224_1085 PF01551 Peptidase family M23 B224_1085 PF08525 Opacity-associated protein A N-terminal motif B224_1087 PF00579 tRNA synthetases class I (W and Y) B224_1088 PF01609 Transposase DDE domain B224_1088 PF13006 Insertion element 4 transposase N-terminal B224_1090 PF01204 Trehalase B224_1094 PF03466 LysR substrate binding domain B224_1094 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1096 PF00155 Aminotransferase class I and II B224_1098 PF07690 Major Facilitator Superfamily B224_1101 PF03466 LysR substrate binding domain B224_1101 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1102 PF00106 short chain dehydrogenase B224_1103 PF08496 Peptidase family S49 N-terminal B224_1103 PF01343 Peptidase family S49 B224_1104 PF04996 Succinylarginine dihydrolase B224_1107 PF08272 Topoisomerase I zinc-ribbon-like B224_1107 PF01396 Topoisomerase DNA binding C4 zinc finger B224_1107 PF01751 Toprim domain B224_1107 PF01131 DNA topoisomerase B224_1111 PF08447 PAS fold B224_1111 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_1113 PF02838 Glycosyl hydrolase family 20, domain 2 B224_1113 PF00728 Glycosyl hydrolase family 20, catalytic domain B224_1114 PF01869 BadF/BadG/BcrA/BcrD ATPase family B224_1117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_1117 PF00005 ABC transporter B224_1119 PF00005 ABC transporter B224_1119 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_1120 PF00528 Binding-protein-dependent transport system inner membrane component B224_1120 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_1122 PF00528 Binding-protein-dependent transport system inner membrane component B224_1123 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_1125 PF00919 Uncharacterized protein family UPF0004 B224_1125 PF04055 Radical SAM superfamily B224_1125 PF18693 TRAM domain B224_1126 PF07634 RtxA repeat B224_1126 PF12146 Serine aminopeptidase, S33 B224_1126 PF16671 Actin cross-linking domain B224_1126 PF11713 Peptidase C80 family B224_1126 PF11647 Membrane Localization Domain B224_1129 PF04055 Radical SAM superfamily B224_1129 PF00919 Uncharacterized protein family UPF0004 B224_1129 PF18693 TRAM domain B224_1133 PF01609 Transposase DDE domain B224_1136 PF08019 Phosphoethanolamine transferase EptA/EptB B224_1136 PF00884 Sulfatase B224_1137 PF01609 Transposase DDE domain B224_1138 PF01609 Transposase DDE domain B224_1139 PF01695 IstB-like ATP binding protein B224_1140 PF05598 Transposase domain (DUF772) B224_1140 PF01609 Transposase DDE domain B224_1142 PF05598 Transposase domain (DUF772) B224_1142 PF01609 Transposase DDE domain B224_1143 PF02796 Helix-turn-helix domain of resolvase B224_1143 PF00665 Integrase core domain B224_1145 PF00239 Resolvase, N terminal domain B224_1145 PF02796 Helix-turn-helix domain of resolvase B224_1148 PF00005 ABC transporter B224_1150 PF13533 Biotin-lipoyl like B224_1152 PF13358 DDE superfamily endonuclease B224_1152 PF13592 Winged helix-turn helix B224_1157 PF01609 Transposase DDE domain B224_1157 PF05598 Transposase domain (DUF772) B224_1158 PF13737 Transposase DDE domain B224_1160 PF01527 Transposase B224_1162 PF01609 Transposase DDE domain B224_1164 PF07194 P2 response regulator binding domain B224_1164 PF01627 Hpt domain B224_1164 PF02895 Signal transducing histidine kinase, homodimeric domain B224_1164 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_1164 PF01584 CheW-like domain B224_1166 PF01339 CheB methylesterase B224_1166 PF00072 Response regulator receiver domain B224_1168 PF01618 MotA/TolQ/ExbB proton channel family B224_1169 PF13677 Membrane MotB of proton-channel complex MotA/MotB B224_1169 PF00691 OmpA family B224_1170 PF13614 AAA domain B224_1173 PF01584 CheW-like domain B224_1175 PF00005 ABC transporter B224_1176 PF03379 CcmB protein B224_1178 PF01578 Cytochrome C assembly protein B224_1180 PF04995 Heme exporter protein D (CcmD) B224_1181 PF03100 CcmE B224_1182 PF01578 Cytochrome C assembly protein B224_1182 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal B224_1184 PF08534 Redoxin B224_1185 PF03918 Cytochrome C biogenesis protein B224_1188 PF04333 MlaA lipoprotein B224_1189 PF13006 Insertion element 4 transposase N-terminal B224_1189 PF01609 Transposase DDE domain B224_1190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain B224_1190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain B224_1191 PF00462 Glutaredoxin B224_1193 PF01189 16S rRNA methyltransferase RsmB/F B224_1193 PF01029 NusB family B224_1198 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region B224_1198 PF01243 Pyridoxamine 5'-phosphate oxidase B224_1199 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1199 PF03466 LysR substrate binding domain B224_1204 PF05114 Protein of unknown function (DUF692) B224_1211 PF13426 PAS domain B224_1211 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_1211 PF08447 PAS fold B224_1216 PF03205 Molybdopterin guanine dinucleotide synthesis protein B B224_1217 PF12804 MobA-like NTP transferase domain B224_1218 PF00390 Malic enzyme, N-terminal domain B224_1218 PF03949 Malic enzyme, NAD binding domain B224_1220 PF00860 Permease family B224_1224 PF10282 Lactonase, 7-bladed beta-propeller B224_1230 PF01609 Transposase DDE domain B224_1230 PF13808 DDE_Tnp_1-associated B224_1231 PF01609 Transposase DDE domain B224_1231 PF13808 DDE_Tnp_1-associated B224_1233 PF00005 ABC transporter B224_1236 PF02653 Branched-chain amino acid transport system / permease component B224_1238 PF00933 Glycosyl hydrolase family 3 N terminal domain B224_1238 PF01915 Glycosyl hydrolase family 3 C-terminal domain B224_1241 PF01810 LysE type translocator B224_1244 PF12794 Mechanosensitive ion channel inner membrane domain 1 B224_1244 PF12795 Mechanosensitive ion channel porin domain B224_1244 PF00924 Mechanosensitive ion channel B224_1246 PF02887 Pyruvate kinase, alpha/beta domain B224_1246 PF00224 Pyruvate kinase, barrel domain B224_1247 PF08007 Cupin superfamily protein B224_1248 PF08328 Adenylosuccinate lyase C-terminal B224_1248 PF00206 Lyase B224_1249 PF04356 Protein of unknown function (DUF489) B224_1252 PF00293 NUDIX domain B224_1253 PF00849 RNA pseudouridylate synthase B224_1255 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_1258 PF07690 Major Facilitator Superfamily B224_1261 PF02378 Phosphotransferase system, EIIC B224_1261 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_1261 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B224_1266 PF11999 Protein of unknown function (DUF3494) B224_1266 PF02368 Bacterial Ig-like domain (group 2) B224_1271 PF10688 Bacterial inner membrane protein B224_1274 PF01238 Phosphomannose isomerase type I B224_1275 PF12833 Helix-turn-helix domain B224_1276 PF00180 Isocitrate/isopropylmalate dehydrogenase B224_1280 PF13006 Insertion element 4 transposase N-terminal B224_1280 PF01609 Transposase DDE domain B224_1283 PF00291 Pyridoxal-phosphate dependent enzyme B224_1284 PF02447 GntP family permease B224_1285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1285 PF03466 LysR substrate binding domain B224_1286 PF00816 H-NS histone family B224_1287 PF00793 DAHP synthetase I family B224_1288 PF04954 Siderophore-interacting protein B224_1288 PF08021 Siderophore-interacting FAD-binding domain B224_1290 PF02321 Outer membrane efflux protein B224_1291 PF12704 MacB-like periplasmic core domain B224_1291 PF02687 FtsX-like permease family B224_1291 PF00005 ABC transporter B224_1294 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_1296 PF01368 DHH family B224_1296 PF02833 DHHA2 domain B224_1297 PF02463 RecF/RecN/SMC N terminal domain B224_1300 PF00990 Diguanylate cyclase, GGDEF domain B224_1300 PF17158 Membrane-associated sensor, integral membrane domain B224_1302 PF01513 ATP-NAD kinase B224_1303 PF01025 GrpE B224_1305 PF00012 Hsp70 protein B224_1307 PF00226 DnaJ domain B224_1307 PF00684 DnaJ central domain B224_1307 PF01556 DnaJ C terminal domain B224_1309 PF02264 LamB porin B224_1309 PF11471 Maltoporin periplasmic N-terminal extension B224_1310 PF00294 pfkB family carbohydrate kinase B224_1311 PF02378 Phosphotransferase system, EIIC B224_1311 PF00367 phosphotransferase system, EIIB B224_1314 PF08244 Glycosyl hydrolases family 32 C terminal B224_1314 PF00251 Glycosyl hydrolases family 32 N-terminal domain B224_1315 PF00356 Bacterial regulatory proteins, lacI family B224_1315 PF13407 Periplasmic binding protein domain B224_1317 PF02308 MgtC family B224_1322 PF04143 Sulphur transport B224_1328 PF00873 AcrB/AcrD/AcrF family B224_1331 PF00990 Diguanylate cyclase, GGDEF domain B224_1331 PF03707 Bacterial signalling protein N terminal repeat B224_1331 PF00563 EAL domain B224_1332 PF10437 Bacterial lipoate protein ligase C-terminus B224_1332 PF03099 Biotin/lipoate A/B protein ligase family B224_1336 PF12323 Helix-turn-helix domain B224_1336 PF01385 Probable transposase B224_1336 PF07282 Putative transposase DNA-binding domain B224_1339 PF00873 AcrB/AcrD/AcrF family B224_1343 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_1343 PF00529 HlyD membrane-fusion protein of T1SS B224_1346 PF03372 Endonuclease/Exonuclease/phosphatase family B224_1349 PF12323 Helix-turn-helix domain B224_1352 PF00011 Hsp20/alpha crystallin family B224_1354 PF02424 ApbE family B224_1355 PF00127 Copper binding proteins, plastocyanin/azurin family B224_1358 PF01156 Inosine-uridine preferring nucleoside hydrolase B224_1361 PF03466 LysR substrate binding domain B224_1361 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1362 PF02627 Carboxymuconolactone decarboxylase family B224_1364 PF01609 Transposase DDE domain B224_1364 PF13808 DDE_Tnp_1-associated B224_1365 PF06481 COX Aromatic Rich Motif B224_1365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain B224_1368 PF00115 Cytochrome C and Quinol oxidase polypeptide I B224_1370 PF00510 Cytochrome c oxidase subunit III B224_1371 PF03626 Prokaryotic Cytochrome C oxidase subunit IV B224_1372 PF01040 UbiA prenyltransferase family B224_1375 PF07690 Major Facilitator Superfamily B224_1377 PF07237 Protein of unknown function (DUF1428) B224_1379 PF01609 Transposase DDE domain B224_1379 PF13006 Insertion element 4 transposase N-terminal B224_1381 PF03466 LysR substrate binding domain B224_1381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1387 PF13657 HipA N-terminal domain B224_1387 PF07804 HipA-like C-terminal domain B224_1388 PF01381 Helix-turn-helix B224_1389 PF01609 Transposase DDE domain B224_1389 PF13808 DDE_Tnp_1-associated B224_1398 PF00005 ABC transporter B224_1399 PF01061 ABC-2 type transporter B224_1400 PF02563 Polysaccharide biosynthesis/export protein B224_1400 PF10531 SLBB domain B224_1401 PF01609 Transposase DDE domain B224_1405 PF04055 Radical SAM superfamily B224_1407 PF00563 EAL domain B224_1407 PF00990 Diguanylate cyclase, GGDEF domain B224_1407 PF03707 Bacterial signalling protein N terminal repeat B224_1409 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B224_1409 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_1410 PF05598 Transposase domain (DUF772) B224_1410 PF01609 Transposase DDE domain B224_1411 PF07690 Major Facilitator Superfamily B224_1413 PF12323 Helix-turn-helix domain B224_1415 PF00529 HlyD membrane-fusion protein of T1SS B224_1415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_1416 PF02321 Outer membrane efflux protein B224_1421 PF01835 MG2 domain B224_1421 PF07678 A-macroglobulin TED domain B224_1421 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain B224_1421 PF00207 Alpha-2-macroglobulin family B224_1421 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain B224_1421 PF07703 Alpha-2-macroglobulin bait region domain B224_1421 PF11974 Bacterial alpha-2-macroglobulin MG3 domain B224_1421 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain B224_1421 PF17962 Bacterial macroglobulin domain 6 B224_1422 PF00905 Penicillin binding protein transpeptidase domain B224_1422 PF00912 Transglycosylase B224_1422 PF06832 Penicillin-Binding Protein C-terminus Family B224_1425 PF02926 THUMP domain B224_1425 PF02568 Thiamine biosynthesis protein (ThiI) B224_1429 PF03458 UPF0126 domain B224_1430 PF00700 Bacterial flagellin C-terminal helical region B224_1430 PF07196 Flagellin hook IN motif B224_1430 PF00669 Bacterial flagellin N-terminal helical region B224_1432 PF07196 Flagellin hook IN motif B224_1432 PF07195 Flagellar hook-associated protein 2 C-terminus B224_1432 PF02465 Flagellar hook-associated protein 2 N-terminus B224_1434 PF13808 DDE_Tnp_1-associated B224_1434 PF01609 Transposase DDE domain B224_1436 PF01609 Transposase DDE domain B224_1436 PF05598 Transposase domain (DUF772) B224_1440 PF01497 Periplasmic binding protein B224_1443 PF01048 Phosphorylase superfamily B224_1445 PF02535 ZIP Zinc transporter B224_1447 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_1448 PF00730 HhH-GPD superfamily base excision DNA repair protein B224_1448 PF00633 Helix-hairpin-helix motif B224_1448 PF10576 Iron-sulfur binding domain of endonuclease III B224_1449 PF02508 Rnf-Nqr subunit, membrane protein B224_1451 PF04205 FMN-binding domain B224_1454 PF03116 NQR2, RnfD, RnfE family B224_1457 PF10531 SLBB domain B224_1457 PF12838 4Fe-4S dicluster domain B224_1457 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit B224_1457 PF13375 RnfC Barrel sandwich hybrid domain B224_1458 PF04060 Putative Fe-S cluster B224_1459 PF02508 Rnf-Nqr subunit, membrane protein B224_1460 PF00892 EamA-like transporter family B224_1464 PF08447 PAS fold B224_1464 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_1464 PF13426 PAS domain B224_1466 PF07055 Enoyl reductase FAD binding domain B224_1466 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase B224_1466 PF12241 Trans-2-enoyl-CoA reductase catalytic region B224_1467 PF03606 C4-dicarboxylate anaerobic carrier B224_1468 PF00155 Aminotransferase class I and II B224_1471 PF00462 Glutaredoxin B224_1473 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family B224_1474 PF00271 Helicase conserved C-terminal domain B224_1474 PF04851 Type III restriction enzyme, res subunit B224_1476 PF00529 HlyD membrane-fusion protein of T1SS B224_1476 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_1477 PF11742 Protein of unknown function (DUF3302) B224_1478 PF12795 Mechanosensitive ion channel porin domain B224_1478 PF00924 Mechanosensitive ion channel B224_1478 PF12794 Mechanosensitive ion channel inner membrane domain 1 B224_1479 PF02554 Carbon starvation protein CstA B224_1481 PF00072 Response regulator receiver domain B224_1481 PF04397 LytTr DNA-binding domain B224_1482 PF06580 Histidine kinase B224_1482 PF07694 5TMR of 5TMR-LYT B224_1483 PF01966 HD domain B224_1483 PF11871 Domain of unknown function (DUF3391) B224_1485 PF00171 Aldehyde dehydrogenase family B224_1485 PF00465 Iron-containing alcohol dehydrogenase B224_1488 PF01914 MarC family integral membrane protein B224_1489 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_1491 PF00528 Binding-protein-dependent transport system inner membrane component B224_1492 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_1492 PF00528 Binding-protein-dependent transport system inner membrane component B224_1493 PF00005 ABC transporter B224_1493 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_1494 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_1494 PF00005 ABC transporter B224_1495 PF03741 Integral membrane protein TerC family B224_1498 PF00842 Alanine racemase, C-terminal domain B224_1498 PF01168 Alanine racemase, N-terminal domain B224_1499 PF01609 Transposase DDE domain B224_1501 PF00375 Sodium:dicarboxylate symporter family B224_1505 PF01979 Amidohydrolase family B224_1510 PF01230 HIT domain B224_1518 PF12323 Helix-turn-helix domain B224_1519 PF01385 Probable transposase B224_1519 PF12323 Helix-turn-helix domain B224_1519 PF07282 Putative transposase DNA-binding domain B224_1521 PF07549 SecD/SecF GG Motif B224_1521 PF02355 Protein export membrane protein B224_1521 PF13721 SecD export protein N-terminal TM region B224_1524 PF02355 Protein export membrane protein B224_1524 PF07549 SecD/SecF GG Motif B224_1527 PF05661 Protein of unknown function (DUF808) B224_1533 PF01432 Peptidase family M3 B224_1533 PF08439 Oligopeptidase F B224_1534 PF05728 Uncharacterised protein family (UPF0227) B224_1535 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_1538 PF01906 Putative heavy-metal-binding B224_1540 PF02016 LD-carboxypeptidase N-terminal domain B224_1540 PF17676 LD-carboxypeptidase C-terminal domain B224_1542 PF02016 LD-carboxypeptidase N-terminal domain B224_1542 PF17676 LD-carboxypeptidase C-terminal domain B224_1544 PF00884 Sulfatase B224_1547 PF01842 ACT domain B224_1547 PF00696 Amino acid kinase family B224_1549 PF00696 Amino acid kinase family B224_1549 PF00583 Acetyltransferase (GNAT) family B224_1551 PF01625 Peptide methionine sulfoxide reductase B224_1554 PF04237 YjbR B224_1556 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1556 PF03466 LysR substrate binding domain B224_1557 PF02652 L-lactate permease B224_1559 PF02754 Cysteine-rich domain B224_1560 PF13183 4Fe-4S dicluster domain B224_1560 PF02589 LUD domain B224_1560 PF11870 Domain of unknown function (DUF3390) B224_1561 PF02589 LUD domain B224_1563 PF01565 FAD binding domain B224_1563 PF02913 FAD linked oxidases, C-terminal domain B224_1564 PF05598 Transposase domain (DUF772) B224_1564 PF01609 Transposase DDE domain B224_1569 PF00005 ABC transporter B224_1571 PF03600 Citrate transporter B224_1575 PF07690 Major Facilitator Superfamily B224_1583 PF01593 Flavin containing amine oxidoreductase B224_1585 PF03239 Iron permease FTR1 family B224_1593 PF04168 A predicted alpha-helical domain with a conserved ER motif. B224_1593 PF14403 Circularly permuted ATP-grasp type 2 B224_1595 PF14403 Circularly permuted ATP-grasp type 2 B224_1601 PF00589 Phage integrase family B224_1601 PF13356 Arm DNA-binding domain B224_1601 PF14659 Phage integrase, N-terminal SAM-like domain B224_1609 PF00916 Sulfate permease family B224_1609 PF01740 STAS domain B224_1611 PF05598 Transposase domain (DUF772) B224_1611 PF01609 Transposase DDE domain B224_1612 PF13662 Toprim domain B224_1612 PF02132 RecR protein B224_1614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_1614 PF00183 Hsp90 protein B224_1617 PF05191 Adenylate kinase, active site lid B224_1619 PF00762 Ferrochelatase B224_1621 PF00294 pfkB family carbohydrate kinase B224_1623 PF00762 Ferrochelatase B224_1625 PF00294 pfkB family carbohydrate kinase B224_1628 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_1628 PF00672 HAMP domain B224_1628 PF17200 Single Cache domain 2 B224_1633 PF03707 Bacterial signalling protein N terminal repeat B224_1633 PF00990 Diguanylate cyclase, GGDEF domain B224_1633 PF00563 EAL domain B224_1635 PF00483 Nucleotidyl transferase B224_1639 PF07273 Protein of unknown function (DUF1439) B224_1641 PF00425 chorismate binding enzyme B224_1642 PF00501 AMP-binding enzyme B224_1642 PF13193 AMP-binding enzyme C-terminal domain B224_1644 PF00857 Isochorismatase family B224_1644 PF00550 Phosphopantetheine attachment site B224_1647 PF01609 Transposase DDE domain B224_1648 PF00550 Phosphopantetheine attachment site B224_1648 PF00857 Isochorismatase family B224_1649 PF00501 AMP-binding enzyme B224_1649 PF00668 Condensation domain B224_1649 PF00550 Phosphopantetheine attachment site B224_1649 PF00975 Thioesterase domain B224_1649 PF13193 AMP-binding enzyme C-terminal domain B224_1656 PF00550 Phosphopantetheine attachment site B224_1656 PF07993 Male sterility protein B224_1656 PF00668 Condensation domain B224_1656 PF13193 AMP-binding enzyme C-terminal domain B224_1656 PF00501 AMP-binding enzyme B224_1657 PF00668 Condensation domain B224_1657 PF13193 AMP-binding enzyme C-terminal domain B224_1657 PF00501 AMP-binding enzyme B224_1657 PF00550 Phosphopantetheine attachment site B224_1657 PF00975 Thioesterase domain B224_1660 PF01497 Periplasmic binding protein B224_1661 PF01648 4'-phosphopantetheinyl transferase superfamily B224_1661 PF17837 4'-phosphopantetheinyl transferase N-terminal domain B224_1662 PF00005 ABC transporter B224_1664 PF01032 FecCD transport family B224_1665 PF01032 FecCD transport family B224_1666 PF00593 TonB dependent receptor B224_1666 PF07715 TonB-dependent Receptor Plug Domain B224_1671 PF11143 Protein of unknown function (DUF2919) B224_1673 PF01544 CorA-like Mg2+ transporter protein B224_1675 PF01012 Electron transfer flavoprotein domain B224_1676 PF00766 Electron transfer flavoprotein FAD-binding domain B224_1676 PF01012 Electron transfer flavoprotein domain B224_1678 PF00266 Aminotransferase class-V B224_1679 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) B224_1681 PF00793 DAHP synthetase I family B224_1682 PF03741 Integral membrane protein TerC family B224_1685 PF08891 YfcL protein B224_1686 PF00501 AMP-binding enzyme B224_1688 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region B224_1688 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region B224_1689 PF04172 LrgB-like family B224_1690 PF03788 LrgA family B224_1695 PF08411 Exonuclease C-terminal B224_1695 PF00929 Exonuclease B224_1696 PF13356 Arm DNA-binding domain B224_1696 PF14659 Phage integrase, N-terminal SAM-like domain B224_1696 PF00589 Phage integrase family B224_1697 PF00436 Single-strand binding protein family B224_1709 PF00717 Peptidase S24-like B224_1709 PF01726 LexA DNA binding domain B224_1716 PF09669 Phage regulatory protein Rha (Phage_pRha) B224_1716 PF10549 ORF11CD3 domain B224_1719 PF05866 Endodeoxyribonuclease RusA B224_1724 PF07471 Phage DNA packaging protein Nu1 B224_1725 PF02413 Caudovirales tail fibre assembly protein, lambda gpK B224_1728 PF00574 Clp protease B224_1751 PF12323 Helix-turn-helix domain B224_1753 PF13006 Insertion element 4 transposase N-terminal B224_1753 PF01609 Transposase DDE domain B224_1754 PF09924 Uncharacterised conserved protein (DUF2156) B224_1754 PF03706 Lysylphosphatidylglycerol synthase TM region B224_1757 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_1762 PF00795 Carbon-nitrogen hydrolase B224_1764 PF00155 Aminotransferase class I and II B224_1765 PF03466 LysR substrate binding domain B224_1765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1767 PF11762 L-arabinose isomerase C-terminal domain B224_1767 PF02610 L-arabinose isomerase B224_1768 PF00596 Class II Aldolase and Adducin N-terminal domain B224_1770 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B224_1771 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family B224_1772 PF00005 ABC transporter B224_1774 PF02653 Branched-chain amino acid transport system / permease component B224_1777 PF07670 Nucleoside recognition B224_1778 PF07670 Nucleoside recognition B224_1779 PF01979 Amidohydrolase family B224_1781 PF13610 DDE domain B224_1784 PF02653 Branched-chain amino acid transport system / permease component B224_1785 PF12833 Helix-turn-helix domain B224_1785 PF02311 AraC-like ligand binding domain B224_1786 PF00444 Ribosomal protein L36 B224_1787 PF01197 Ribosomal protein L31 B224_1790 PF01863 Protein of unknown function DUF45 B224_1795 PF03606 C4-dicarboxylate anaerobic carrier B224_1798 PF00665 Integrase core domain B224_1799 PF01695 IstB-like ATP binding protein B224_1802 PF01609 Transposase DDE domain B224_1804 PF01609 Transposase DDE domain B224_1810 PF01609 Transposase DDE domain B224_1810 PF13808 DDE_Tnp_1-associated B224_1811 PF01609 Transposase DDE domain B224_1811 PF05598 Transposase domain (DUF772) B224_1813 PF05598 Transposase domain (DUF772) B224_1813 PF01609 Transposase DDE domain B224_1814 PF01609 Transposase DDE domain B224_1814 PF13808 DDE_Tnp_1-associated B224_1818 PF01609 Transposase DDE domain B224_1818 PF13808 DDE_Tnp_1-associated B224_1825 PF04536 TPM domain B224_1827 PF03411 Penicillin-insensitive murein endopeptidase B224_1829 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) B224_1830 PF00248 Aldo/keto reductase family B224_1834 PF01212 Beta-eliminating lyase B224_1836 PF00072 Response regulator receiver domain B224_1838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1838 PF03466 LysR substrate binding domain B224_1840 PF00990 Diguanylate cyclase, GGDEF domain B224_1840 PF00563 EAL domain B224_1840 PF13188 PAS domain B224_1840 PF03707 Bacterial signalling protein N terminal repeat B224_1844 PF03806 AbgT putative transporter family B224_1846 PF00881 Nitroreductase family B224_1851 PF07690 Major Facilitator Superfamily B224_1852 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1852 PF03466 LysR substrate binding domain B224_1853 PF00925 GTP cyclohydrolase II B224_1854 PF02224 Cytidylate kinase B224_1855 PF00575 S1 RNA binding domain B224_1857 PF00216 Bacterial DNA-binding protein B224_1859 PF18073 Rubredoxin metal binding domain B224_1860 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family B224_1863 PF06508 Queuosine biosynthesis protein QueC B224_1865 PF04055 Radical SAM superfamily B224_1866 PF12843 Putative quorum-sensing-regulated virulence factor B224_1867 PF01923 Cobalamin adenosyltransferase B224_1869 PF13808 DDE_Tnp_1-associated B224_1869 PF01609 Transposase DDE domain B224_1872 PF00816 H-NS histone family B224_1873 PF03553 Na+/H+ antiporter family B224_1875 PF00265 Thymidine kinase B224_1877 PF10722 Putative bacterial sensory transduction regulator B224_1888 PF02646 RmuC family B224_1890 PF08241 Methyltransferase domain B224_1893 PF13657 HipA N-terminal domain B224_1893 PF07804 HipA-like C-terminal domain B224_1900 PF13808 DDE_Tnp_1-associated B224_1900 PF01609 Transposase DDE domain B224_1911 PF13006 Insertion element 4 transposase N-terminal B224_1911 PF01609 Transposase DDE domain B224_1918 PF01609 Transposase DDE domain B224_1918 PF13808 DDE_Tnp_1-associated B224_1919 PF05598 Transposase domain (DUF772) B224_1919 PF01609 Transposase DDE domain B224_1921 PF01609 Transposase DDE domain B224_1921 PF13808 DDE_Tnp_1-associated B224_1925 PF00436 Single-strand binding protein family B224_1926 PF13438 Domain of unknown function (DUF4113) B224_1926 PF11798 IMS family HHH motif B224_1926 PF11799 impB/mucB/samB family C-terminal domain B224_1926 PF00817 impB/mucB/samB family B224_1927 PF00717 Peptidase S24-like B224_1928 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 B224_1928 PF13542 Helix-turn-helix domain of transposase family ISL3 B224_1928 PF01610 Transposase B224_1930 PF01695 IstB-like ATP binding protein B224_1947 PF00266 Aminotransferase class-V B224_1955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain B224_1955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain B224_1958 PF01053 Cys/Met metabolism PLP-dependent enzyme B224_1961 PF13460 NAD(P)H-binding B224_1962 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1962 PF03466 LysR substrate binding domain B224_1964 PF00106 short chain dehydrogenase B224_1966 PF06445 GyrI-like small molecule binding domain B224_1966 PF12833 Helix-turn-helix domain B224_1968 PF07715 TonB-dependent Receptor Plug Domain B224_1968 PF00593 TonB dependent receptor B224_1970 PF13006 Insertion element 4 transposase N-terminal B224_1970 PF01609 Transposase DDE domain B224_1971 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_1971 PF03466 LysR substrate binding domain B224_1972 PF01717 Cobalamin-independent synthase, Catalytic domain B224_1972 PF08267 Cobalamin-independent synthase, N-terminal domain B224_1975 PF00571 CBS domain B224_1976 PF07969 Amidohydrolase family B224_1981 PF01266 FAD dependent oxidoreductase B224_1984 PF04244 Deoxyribodipyrimidine photo-lyase-related protein B224_1985 PF00768 D-alanyl-D-alanine carboxypeptidase B224_1986 PF03918 Cytochrome C biogenesis protein B224_1987 PF08534 Redoxin B224_1989 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal B224_1989 PF01578 Cytochrome C assembly protein B224_1991 PF03916 Polysulphide reductase, NrfD B224_1992 PF00037 4Fe-4S binding domain B224_1992 PF13247 4Fe-4S dicluster domain B224_1993 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) B224_1993 PF13435 Cytochrome c554 and c-prime B224_1995 PF02335 Cytochrome c552 B224_2003 PF13183 4Fe-4S dicluster domain B224_2003 PF02754 Cysteine-rich domain B224_2005 PF00890 FAD binding domain B224_2007 PF04324 BFD-like [2Fe-2S] binding domain B224_2007 PF01266 FAD dependent oxidoreductase B224_2008 PF02810 SEC-C motif B224_2009 PF00672 HAMP domain B224_2009 PF17200 Single Cache domain 2 B224_2009 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_2011 PF00480 ROK family B224_2011 PF01047 MarR family B224_2013 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B224_2013 PF00989 PAS fold B224_2013 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_2013 PF17203 Single cache domain 3 B224_2014 PF00072 Response regulator receiver domain B224_2017 PF01970 Tripartite tricarboxylate transporter TctA family B224_2022 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_2022 PF01464 Transglycosylase SLT domain B224_2024 PF02080 TrkA-C domain B224_2024 PF06826 Predicted Permease Membrane Region B224_2027 PF02151 UvrB/uvrC motif B224_2027 PF00271 Helicase conserved C-terminal domain B224_2027 PF17757 UvrB interaction domain B224_2027 PF12344 Ultra-violet resistance protein B B224_2027 PF04851 Type III restriction enzyme, res subunit B224_2029 PF09335 SNARE associated Golgi protein B224_2030 PF02600 Disulfide bond formation protein DsbB B224_2031 PF06450 Bacterial Na+/H+ antiporter B (NhaB) B224_2032 PF07840 FadR C-terminal domain B224_2032 PF00392 Bacterial regulatory proteins, gntR family B224_2033 PF04293 SpoVR like protein B224_2034 PF04285 Protein of unknown function (DUF444) B224_2036 PF06798 PrkA serine protein kinase C-terminal domain B224_2036 PF08298 PrkA AAA domain B224_2039 PF00570 HRDC domain B224_2039 PF00271 Helicase conserved C-terminal domain B224_2039 PF09382 RQC domain B224_2039 PF16124 RecQ zinc-binding B224_2039 PF00270 DEAD/DEAH box helicase B224_2040 PF00375 Sodium:dicarboxylate symporter family B224_2042 PF03222 Tryptophan/tyrosine permease family B224_2043 PF01609 Transposase DDE domain B224_2043 PF13808 DDE_Tnp_1-associated B224_2044 PF00293 NUDIX domain B224_2045 PF00425 chorismate binding enzyme B224_2045 PF04715 Anthranilate synthase component I, N terminal region B224_2054 PF00343 Carbohydrate phosphorylase B224_2057 PF00939 Sodium:sulfate symporter transmembrane region B224_2060 PF00085 Thioredoxin B224_2061 PF00072 Response regulator receiver domain B224_2061 PF00672 HAMP domain B224_2061 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) B224_2061 PF01627 Hpt domain B224_2061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_2061 PF00512 His Kinase A (phospho-acceptor) domain B224_2064 PF00005 ABC transporter B224_2064 PF00664 ABC transporter transmembrane region B224_2066 PF00664 ABC transporter transmembrane region B224_2066 PF00005 ABC transporter B224_2071 PF01609 Transposase DDE domain B224_2071 PF13808 DDE_Tnp_1-associated B224_2072 PF12323 Helix-turn-helix domain B224_2076 PF01575 MaoC like domain B224_2078 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus B224_2078 PF00561 alpha/beta hydrolase fold B224_2083 PF08543 Phosphomethylpyrimidine kinase B224_2084 PF03992 Antibiotic biosynthesis monooxygenase B224_2087 PF01261 Xylose isomerase-like TIM barrel B224_2088 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B224_2088 PF02894 Oxidoreductase family, C-terminal alpha/beta domain B224_2089 PF03466 LysR substrate binding domain B224_2089 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2092 PF03279 Bacterial lipid A biosynthesis acyltransferase B224_2094 PF03279 Bacterial lipid A biosynthesis acyltransferase B224_2098 PF02678 Pirin B224_2098 PF05726 Pirin C-terminal cupin domain B224_2101 PF00136 DNA polymerase family B B224_2101 PF03104 DNA polymerase family B, exonuclease domain B224_2102 PF01554 MatE B224_2104 PF06786 Uncharacterised protein family (UPF0253) B224_2105 PF00677 Lumazine binding domain B224_2106 PF07282 Putative transposase DNA-binding domain B224_2106 PF01385 Probable transposase B224_2106 PF12323 Helix-turn-helix domain B224_2109 PF13419 Haloacid dehalogenase-like hydrolase B224_2110 PF01370 NAD dependent epimerase/dehydratase family B224_2110 PF02222 ATP-grasp domain B224_2111 PF00892 EamA-like transporter family B224_2112 PF02525 Flavodoxin-like fold B224_2114 PF13737 Transposase DDE domain B224_2122 PF17783 CvfB-like winged helix domain B224_2122 PF13509 S1 domain B224_2124 PF04269 Protein of unknown function, DUF440 B224_2125 PF00912 Transglycosylase B224_2126 PF04269 Protein of unknown function, DUF440 B224_2127 PF03776 Septum formation topological specificity factor MinE B224_2128 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain B224_2129 PF05209 Septum formation inhibitor MinC, N-terminal domain B224_2129 PF03775 Septum formation inhibitor MinC, C-terminal domain B224_2130 PF05166 YcgL domain B224_2131 PF13406 Transglycosylase SLT domain B224_2133 PF03313 Serine dehydratase alpha chain B224_2133 PF03315 Serine dehydratase beta chain B224_2135 PF03315 Serine dehydratase beta chain B224_2135 PF03313 Serine dehydratase alpha chain B224_2137 PF06865 Pyrimidine/purine nucleoside phosphorylase B224_2138 PF00375 Sodium:dicarboxylate symporter family B224_2140 PF09278 MerR, DNA binding B224_2140 PF00376 MerR family regulatory protein B224_2141 PF02803 Thiolase, C-terminal domain B224_2141 PF00108 Thiolase, N-terminal domain B224_2143 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) B224_2146 PF08668 HDOD domain B224_2146 PF00563 EAL domain B224_2147 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) B224_2148 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) B224_2150 PF04542 Sigma-70 region 2 B224_2150 PF08281 Sigma-70, region 4 B224_2156 PF17863 AAA lid domain B224_2156 PF07728 AAA domain (dynein-related subfamily) B224_2156 PF13519 von Willebrand factor type A domain B224_2158 PF01882 Protein of unknown function DUF58 B224_2159 PF07726 ATPase family associated with various cellular activities (AAA) B224_2159 PF17863 AAA lid domain B224_2160 PF02803 Thiolase, C-terminal domain B224_2160 PF00108 Thiolase, N-terminal domain B224_2161 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain B224_2161 PF00378 Enoyl-CoA hydratase/isomerase B224_2161 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B224_2165 PF07152 YaeQ protein B224_2171 PF03050 Transposase IS66 family B224_2171 PF13007 Transposase C of IS166 homeodomain B224_2171 PF13005 zinc-finger binding domain of transposase IS66 B224_2171 PF13817 IS66 C-terminal element B224_2174 PF01527 Transposase B224_2175 PF00872 Transposase, Mutator family B224_2176 PF01609 Transposase DDE domain B224_2179 PF07690 Major Facilitator Superfamily B224_2180 PF00005 ABC transporter B224_2182 PF01032 FecCD transport family B224_2188 PF05433 Glycine zipper 2TM domain B224_2189 PF00501 AMP-binding enzyme B224_2189 PF13193 AMP-binding enzyme C-terminal domain B224_2190 PF08279 HTH domain B224_2190 PF13280 WYL domain B224_2193 PF01502 Phosphoribosyl-AMP cyclohydrolase B224_2193 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase B224_2194 PF00977 Histidine biosynthesis protein B224_2196 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_2196 PF00072 Response regulator receiver domain B224_2196 PF01627 Hpt domain B224_2196 PF00512 His Kinase A (phospho-acceptor) domain B224_2199 PF00072 Response regulator receiver domain B224_2201 PF13808 DDE_Tnp_1-associated B224_2201 PF01609 Transposase DDE domain B224_2204 PF00072 Response regulator receiver domain B224_2205 PF00977 Histidine biosynthesis protein B224_2206 PF00117 Glutamine amidotransferase class-I B224_2207 PF08645 Polynucleotide kinase 3 phosphatase B224_2207 PF00475 Imidazoleglycerol-phosphate dehydratase B224_2209 PF00155 Aminotransferase class I and II B224_2210 PF00815 Histidinol dehydrogenase B224_2211 PF01634 ATP phosphoribosyltransferase B224_2211 PF08029 HisG, C-terminal domain B224_2214 PF13307 Helicase C-terminal domain B224_2214 PF04851 Type III restriction enzyme, res subunit B224_2215 PF00814 Glycoprotease family B224_2216 PF00665 Integrase core domain B224_2216 PF13276 HTH-like domain B224_2216 PF13333 Integrase core domain B224_2218 PF00561 alpha/beta hydrolase fold B224_2220 PF13193 AMP-binding enzyme C-terminal domain B224_2220 PF00501 AMP-binding enzyme B224_2221 PF00570 HRDC domain B224_2221 PF01612 3'-5' exonuclease B224_2223 PF00892 EamA-like transporter family B224_2228 PF01207 Dihydrouridine synthase (Dus) B224_2229 PF04304 Protein of unknown function (DUF454) B224_2230 PF00156 Phosphoribosyl transferase domain B224_2233 PF12169 DNA polymerase III subunits gamma and tau domain III B224_2233 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding B224_2233 PF12170 DNA polymerase III tau subunit V interacting with alpha B224_2234 PF02575 YbaB/EbfC DNA-binding family B224_2235 PF00857 Isochorismatase family B224_2236 PF05726 Pirin C-terminal cupin domain B224_2236 PF02678 Pirin B224_2237 PF03466 LysR substrate binding domain B224_2237 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2245 PF00271 Helicase conserved C-terminal domain B224_2245 PF11898 Domain of unknown function (DUF3418) B224_2245 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold B224_2245 PF04408 Helicase associated domain (HA2) B224_2245 PF00270 DEAD/DEAH box helicase B224_2247 PF01386 Ribosomal L25p family B224_2248 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) B224_2248 PF00072 Response regulator receiver domain B224_2248 PF01627 Hpt domain B224_2248 PF00512 His Kinase A (phospho-acceptor) domain B224_2248 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_2248 PF00672 HAMP domain B224_2249 PF00072 Response regulator receiver domain B224_2251 PF01966 HD domain B224_2251 PF00072 Response regulator receiver domain B224_2252 PF00753 Metallo-beta-lactamase superfamily B224_2254 PF02769 AIR synthase related protein, C-terminal domain B224_2254 PF00586 AIR synthase related protein, N-terminal domain B224_2256 PF17785 PUA-like domain B224_2256 PF10672 S-adenosylmethionine-dependent methyltransferase B224_2258 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_2258 PF00672 HAMP domain B224_2258 PF12729 Four helix bundle sensory module for signal transduction B224_2260 PF00708 Acylphosphatase B224_2263 PF09334 tRNA synthetases class I (M) B224_2263 PF08264 Anticodon-binding domain of tRNA B224_2263 PF01588 Putative tRNA binding domain B224_2264 PF10609 NUBPL iron-transfer P-loop NTPase B224_2265 PF00485 Phosphoribulokinase / Uridine kinase family B224_2266 PF00692 dUTPase B224_2268 PF01384 Phosphate transporter family B224_2270 PF00665 Integrase core domain B224_2274 PF01695 IstB-like ATP binding protein B224_2275 PF13592 Winged helix-turn helix B224_2275 PF13358 DDE superfamily endonuclease B224_2278 PF00575 S1 RNA binding domain B224_2278 PF10150 Ribonuclease E/G family B224_2278 PF12111 Polyribonucleotide phosphorylase C terminal B224_2279 PF01479 S4 domain B224_2279 PF00849 RNA pseudouridylate synthase B224_2280 PF13419 Haloacid dehalogenase-like hydrolase B224_2281 PF02545 Maf-like protein B224_2283 PF02620 Large ribosomal RNA subunit accumulation protein YceD B224_2285 PF01783 Ribosomal L32p protein family B224_2286 PF02504 Fatty acid synthesis protein B224_2287 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal B224_2287 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III B224_2288 PF00698 Acyl transferase domain B224_2291 PF00550 Phosphopantetheine attachment site B224_2293 PF02801 Beta-ketoacyl synthase, C-terminal domain B224_2293 PF00109 Beta-ketoacyl synthase, N-terminal domain B224_2295 PF01063 Amino-transferase class IV B224_2296 PF02618 YceG-like family B224_2297 PF02223 Thymidylate kinase B224_2299 PF09115 DNA polymerase III, delta subunit, C terminal B224_2300 PF01026 TatD related DNase B224_2301 PF00589 Phage integrase family B224_2304 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF B224_2304 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF B224_2304 PF01189 16S rRNA methyltransferase RsmB/F B224_2306 PF02470 MlaD protein B224_2308 PF04403 Paraquat-inducible protein A B224_2311 PF07130 YebG protein B224_2314 PF05362 Lon protease (S16) C-terminal proteolytic domain B224_2314 PF13654 AAA domain B224_2315 PF07977 FabA-like domain B224_2316 PF04957 Ribosome modulation factor B224_2318 PF12848 ABC transporter B224_2318 PF00005 ABC transporter B224_2318 PF16326 ABC transporter C-terminal domain B224_2320 PF10672 S-adenosylmethionine-dependent methyltransferase B224_2320 PF01170 Putative RNA methylase family UPF0020 B224_2320 PF02926 THUMP domain B224_2321 PF07126 Cell-division protein ZapC B224_2322 PF01180 Dihydroorotate dehydrogenase B224_2325 PF05088 Bacterial NAD-glutamate dehydrogenase B224_2327 PF01433 Peptidase family M1 domain B224_2327 PF11940 Domain of unknown function (DUF3458) Ig-like fold B224_2327 PF17432 Domain of unknown function (DUF3458_C) ARM repeats B224_2329 PF11818 C-terminal domain of tail specific protease (DUF3340) B224_2329 PF03572 Peptidase family S41 B224_2329 PF17804 Tail specific protease N-terminal domain B224_2329 PF00595 PDZ domain B224_2330 PF17516 ProQ C-terminal domain B224_2330 PF04352 ProQ/FINO family B224_2331 PF13185 GAF domain B224_2333 PF00115 Cytochrome C and Quinol oxidase polypeptide I B224_2337 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP B224_2337 PF13442 Cytochrome C oxidase, cbb3-type, subunit III B224_2340 PF00403 Heavy-metal-associated domain B224_2343 PF00027 Cyclic nucleotide-binding domain B224_2343 PF13545 Crp-like helix-turn-helix domain B224_2344 PF00582 Universal stress protein family B224_2345 PF01171 PP-loop family B224_2348 PF02798 Glutathione S-transferase, N-terminal domain B224_2348 PF00043 Glutathione S-transferase, C-terminal domain B224_2349 PF05025 RbsD / FucU transport protein family B224_2351 PF00005 ABC transporter B224_2352 PF02653 Branched-chain amino acid transport system / permease component B224_2353 PF13407 Periplasmic binding protein domain B224_2354 PF00294 pfkB family carbohydrate kinase B224_2355 PF00356 Bacterial regulatory proteins, lacI family B224_2357 PF00563 EAL domain B224_2357 PF00990 Diguanylate cyclase, GGDEF domain B224_2357 PF03707 Bacterial signalling protein N terminal repeat B224_2359 PF02146 Sir2 family B224_2365 PF00512 His Kinase A (phospho-acceptor) domain B224_2365 PF09456 RcsC Alpha-Beta-Loop (ABL) B224_2365 PF00072 Response regulator receiver domain B224_2365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_2366 PF00216 Bacterial DNA-binding protein B224_2368 PF03147 Ferredoxin-fold anticodon binding domain B224_2368 PF01588 Putative tRNA binding domain B224_2368 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain B224_2368 PF03484 tRNA synthetase B5 domain B224_2368 PF03483 B3/4 domain B224_2369 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain B224_2369 PF01409 tRNA synthetases class II core domain (F) B224_2371 PF00453 Ribosomal protein L20 B224_2372 PF01632 Ribosomal protein L35 B224_2373 PF00707 Translation initiation factor IF-3, C-terminal domain B224_2373 PF05198 Translation initiation factor IF-3, N-terminal domain B224_2374 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B224_2374 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain B224_2374 PF02824 TGS domain B224_2374 PF03129 Anticodon binding domain B224_2378 PF04055 Radical SAM superfamily B224_2381 PF00521 DNA gyrase/topoisomerase IV, subunit A B224_2381 PF03989 DNA gyrase C-terminal domain, beta-propeller B224_2383 PF13419 Haloacid dehalogenase-like hydrolase B224_2385 PF02867 Ribonucleotide reductase, barrel domain B224_2385 PF03477 ATP cone domain B224_2385 PF00317 Ribonucleotide reductase, all-alpha domain B224_2387 PF00268 Ribonucleotide reductase, small chain B224_2388 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_2390 PF06725 3D domain B224_2390 PF03562 MltA specific insert domain B224_2391 PF06945 Protein of unknown function (DUF1289) B224_2394 PF02378 Phosphotransferase system, EIIC B224_2394 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_2395 PF00294 pfkB family carbohydrate kinase B224_2397 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B224_2397 PF00381 PTS HPr component phosphorylation site B224_2399 PF00356 Bacterial regulatory proteins, lacI family B224_2399 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family B224_2400 PF03222 Tryptophan/tyrosine permease family B224_2401 PF01124 MAPEG family B224_2402 PF01609 Transposase DDE domain B224_2402 PF13006 Insertion element 4 transposase N-terminal B224_2403 PF00271 Helicase conserved C-terminal domain B224_2403 PF00270 DEAD/DEAH box helicase B224_2405 PF01264 Chorismate synthase B224_2406 PF05175 Methyltransferase small domain B224_2407 PF01713 Smr domain B224_2409 PF00300 Histidine phosphatase superfamily (branch 1) B224_2416 PF08329 Chitinase A, N-terminal domain B224_2416 PF00704 Glycosyl hydrolases family 18 B224_2418 PF08274 PhnA Zinc-Ribbon B224_2418 PF03831 PhnA domain B224_2420 PF01810 LysE type translocator B224_2423 PF02567 Phenazine biosynthesis-like protein B224_2430 PF03330 Lytic transglycolase B224_2430 PF05036 Sporulation related domain B224_2431 PF16330 MukB hinge domain B224_2431 PF04310 MukB N-terminal B224_2433 PF04288 MukE-like family B224_2434 PF17193 MukF C-terminal domain B224_2434 PF17192 MukF middle domain B224_2434 PF03882 MukF winged-helix domain B224_2437 PF02698 DUF218 domain B224_2438 PF00121 Triosephosphate isomerase B224_2440 PF00365 Phosphofructokinase B224_2443 PF07687 Peptidase dimerisation domain B224_2443 PF01546 Peptidase family M20/M25/M40 B224_2444 PF13419 Haloacid dehalogenase-like hydrolase B224_2445 PF00883 Cytosol aminopeptidase family, catalytic domain B224_2445 PF02789 Cytosol aminopeptidase family, N-terminal domain B224_2448 PF11398 Protein of unknown function (DUF2813) B224_2449 PF01965 DJ-1/PfpI family B224_2449 PF12833 Helix-turn-helix domain B224_2452 PF03466 LysR substrate binding domain B224_2452 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2453 PF01925 Sulfite exporter TauE/SafE B224_2455 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_2455 PF18029 Glyoxalase-like domain B224_2456 PF01820 D-ala D-ala ligase N-terminus B224_2456 PF07478 D-ala D-ala ligase C-terminus B224_2458 PF00255 Glutathione peroxidase B224_2459 PF00270 DEAD/DEAH box helicase B224_2459 PF00271 Helicase conserved C-terminal domain B224_2461 PF13673 Acetyltransferase (GNAT) domain B224_2463 PF02694 Uncharacterised BCR, YnfA/UPF0060 family B224_2468 PF01928 CYTH domain B224_2469 PF00293 NUDIX domain B224_2470 PF13673 Acetyltransferase (GNAT) domain B224_2471 PF05598 Transposase domain (DUF772) B224_2471 PF01609 Transposase DDE domain B224_2473 PF00933 Glycosyl hydrolase family 3 N terminal domain B224_2476 PF03466 LysR substrate binding domain B224_2476 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2481 PF00232 Glycosyl hydrolase family 1 B224_2482 PF03466 LysR substrate binding domain B224_2482 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2484 PF17158 Membrane-associated sensor, integral membrane domain B224_2484 PF00990 Diguanylate cyclase, GGDEF domain B224_2488 PF00384 Molybdopterin oxidoreductase B224_2489 PF02634 FdhD/NarQ family B224_2493 PF03466 LysR substrate binding domain B224_2493 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2495 PF13407 Periplasmic binding protein domain B224_2498 PF13407 Periplasmic binding protein domain B224_2499 PF00005 ABC transporter B224_2501 PF02653 Branched-chain amino acid transport system / permease component B224_2503 PF02653 Branched-chain amino acid transport system / permease component B224_2505 PF05598 Transposase domain (DUF772) B224_2505 PF01609 Transposase DDE domain B224_2506 PF13333 Integrase core domain B224_2506 PF13276 HTH-like domain B224_2506 PF00665 Integrase core domain B224_2509 PF02796 Helix-turn-helix domain of resolvase B224_2509 PF00239 Resolvase, N terminal domain B224_2513 PF04002 RadC-like JAB domain B224_2520 PF02384 N-6 DNA Methylase B224_2523 PF01925 Sulfite exporter TauE/SafE B224_2526 PF13520 Amino acid permease B224_2529 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase B224_2529 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B224_2531 PF00378 Enoyl-CoA hydratase/isomerase B224_2533 PF00378 Enoyl-CoA hydratase/isomerase B224_2534 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B224_2534 PF02770 Acyl-CoA dehydrogenase, middle domain B224_2534 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B224_2535 PF00171 Aldehyde dehydrogenase family B224_2537 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B224_2537 PF02770 Acyl-CoA dehydrogenase, middle domain B224_2537 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B224_2538 PF01039 Carboxyl transferase domain B224_2539 PF00378 Enoyl-CoA hydratase/isomerase B224_2542 PF00364 Biotin-requiring enzyme B224_2542 PF00289 Biotin carboxylase, N-terminal domain B224_2542 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B224_2542 PF02785 Biotin carboxylase C-terminal domain B224_2543 PF00682 HMGL-like B224_2544 PF00376 MerR family regulatory protein B224_2544 PF09278 MerR, DNA binding B224_2548 PF01184 GPR1/FUN34/yaaH family B224_2549 PF06167 Glucose-regulated metallo-peptidase M90 B224_2550 PF00583 Acetyltransferase (GNAT) family B224_2551 PF01235 Sodium:alanine symporter family B224_2553 PF00378 Enoyl-CoA hydratase/isomerase B224_2558 PF04341 Protein of unknown function, DUF485 B224_2560 PF00474 Sodium:solute symporter family B224_2562 PF00005 ABC transporter B224_2562 PF12848 ABC transporter B224_2564 PF13145 PPIC-type PPIASE domain B224_2565 PF00216 Bacterial DNA-binding protein B224_2567 PF02190 ATP-dependent protease La (LON) substrate-binding domain B224_2567 PF05362 Lon protease (S16) C-terminal proteolytic domain B224_2567 PF00004 ATPase family associated with various cellular activities (AAA) B224_2568 PF06689 ClpX C4-type zinc finger B224_2568 PF10431 C-terminal, D2-small domain, of ClpB protein B224_2568 PF07724 AAA domain (Cdc48 subfamily) B224_2569 PF00574 Clp protease B224_2571 PF05698 Bacterial trigger factor protein (TF) C-terminus B224_2571 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_2571 PF05697 Bacterial trigger factor protein (TF) B224_2576 PF12704 MacB-like periplasmic core domain B224_2576 PF02687 FtsX-like permease family B224_2577 PF00005 ABC transporter B224_2578 PF12704 MacB-like periplasmic core domain B224_2578 PF02687 FtsX-like permease family B224_2583 PF17757 UvrB interaction domain B224_2583 PF02559 CarD-like/TRCF domain B224_2583 PF00270 DEAD/DEAH box helicase B224_2583 PF03461 TRCF domain B224_2583 PF00271 Helicase conserved C-terminal domain B224_2586 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain B224_2588 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_2589 PF00892 EamA-like transporter family B224_2591 PF00300 Histidine phosphatase superfamily (branch 1) B224_2593 PF00675 Insulinase (Peptidase family M16) B224_2593 PF05193 Peptidase M16 inactive domain B224_2593 PF16187 Middle or third domain of peptidase_M16 B224_2594 PF05724 Thiopurine S-methyltransferase (TPMT) B224_2596 PF01609 Transposase DDE domain B224_2596 PF05598 Transposase domain (DUF772) B224_2598 PF01609 Transposase DDE domain B224_2598 PF05598 Transposase domain (DUF772) B224_2600 PF00958 GMP synthase C terminal domain B224_2600 PF02540 NAD synthase B224_2600 PF00117 Glutamine amidotransferase class-I B224_2602 PF00571 CBS domain B224_2602 PF00478 IMP dehydrogenase / GMP reductase domain B224_2611 PF03423 Carbohydrate binding domain (family 25) B224_2611 PF00128 Alpha amylase, catalytic domain B224_2611 PF01373 Glycosyl hydrolase family 14 B224_2615 PF13742 OB-fold nucleic acid binding domain B224_2615 PF02601 Exonuclease VII, large subunit B224_2619 PF04055 Radical SAM superfamily B224_2620 PF00691 OmpA family B224_2621 PF17152 Periplasmic sensor domain B224_2621 PF00990 Diguanylate cyclase, GGDEF domain B224_2623 PF13689 YfiR/HmsC-like B224_2626 PF00158 Sigma-54 interaction domain B224_2626 PF18024 Helix-turn-helix domain B224_2627 PF01329 Pterin 4 alpha carbinolamine dehydratase B224_2628 PF00351 Biopterin-dependent aromatic amino acid hydroxylase B224_2630 PF05128 Domain of unknown function (DUF697) B224_2633 PF04317 YcjX-like family, DUF463 B224_2635 PF06667 Phage shock protein B B224_2637 PF04012 PspA/IM30 family B224_2638 PF02954 Bacterial regulatory protein, Fis family B224_2638 PF00158 Sigma-54 interaction domain B224_2640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_2641 PF00528 Binding-protein-dependent transport system inner membrane component B224_2642 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_2642 PF00528 Binding-protein-dependent transport system inner membrane component B224_2644 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_2644 PF00005 ABC transporter B224_2646 PF00005 ABC transporter B224_2648 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) B224_2649 PF00356 Bacterial regulatory proteins, lacI family B224_2650 PF00367 phosphotransferase system, EIIB B224_2650 PF02378 Phosphotransferase system, EIIC B224_2653 PF00232 Glycosyl hydrolase family 1 B224_2654 PF00156 Phosphoribosyl transferase domain B224_2655 PF02674 Colicin V production protein B224_2658 PF02403 Seryl-tRNA synthetase N-terminal domain B224_2658 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B224_2660 PF00004 ATPase family associated with various cellular activities (AAA) B224_2660 PF12002 MgsA AAA+ ATPase C terminal B224_2660 PF16193 AAA C-terminal domain B224_2661 PF03548 Outer membrane lipoprotein carrier protein LolA B224_2663 PF09397 Ftsk gamma domain B224_2663 PF01580 FtsK/SpoIIIE family B224_2663 PF13491 4TM region of DNA translocase FtsK/SpoIIIE B224_2663 PF17854 FtsK alpha domain B224_2664 PF01037 Lrp/AsnC ligand binding domain B224_2665 PF05222 Alanine dehydrogenase/PNT, N-terminal domain B224_2665 PF01262 Alanine dehydrogenase/PNT, C-terminal domain B224_2667 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_2668 PF05230 MASE2 domain B224_2668 PF00990 Diguanylate cyclase, GGDEF domain B224_2669 PF05433 Glycine zipper 2TM domain B224_2670 PF03588 Leucyl/phenylalanyl-tRNA protein transferase B224_2671 PF04376 Arginine-tRNA-protein transferase, N terminus B224_2671 PF04377 Arginine-tRNA-protein transferase, C terminus B224_2672 PF01176 Translation initiation factor 1A / IF-1 B224_2673 PF17871 AAA lid domain B224_2673 PF10431 C-terminal, D2-small domain, of ClpB protein B224_2673 PF02861 Clp amino terminal domain, pathogenicity island component B224_2673 PF07724 AAA domain (Cdc48 subfamily) B224_2673 PF00004 ATPase family associated with various cellular activities (AAA) B224_2674 PF02617 ATP-dependent Clp protease adaptor protein ClpS B224_2675 PF00313 'Cold-shock' DNA-binding domain B224_2676 PF02774 Semialdehyde dehydrogenase, dimerisation domain B224_2676 PF01118 Semialdehyde dehydrogenase, NAD binding domain B224_2679 PF00893 Small Multidrug Resistance protein B224_2682 PF18381 YcaO cyclodehydratase C-terminal domain B224_2682 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding B224_2684 PF01226 Formate/nitrite transporter B224_2686 PF01228 Glycine radical B224_2686 PF02901 Pyruvate formate lyase-like B224_2688 PF03692 Putative zinc- or iron-chelating domain B224_2690 PF01609 Transposase DDE domain B224_2690 PF13006 Insertion element 4 transposase N-terminal B224_2691 PF00549 CoA-ligase B224_2691 PF02629 CoA binding domain B224_2693 PF00549 CoA-ligase B224_2693 PF08442 ATP-grasp domain B224_2695 PF02817 e3 binding domain B224_2695 PF00364 Biotin-requiring enzyme B224_2695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B224_2698 PF02779 Transketolase, pyrimidine binding domain B224_2698 PF16870 2-oxoglutarate dehydrogenase C-terminal B224_2698 PF16078 2-oxoglutarate dehydrogenase N-terminus B224_2698 PF00676 Dehydrogenase E1 component B224_2699 PF13085 2Fe-2S iron-sulfur cluster binding domain B224_2700 PF02910 Fumarate reductase flavoprotein C-term B224_2700 PF00890 FAD binding domain B224_2702 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit B224_2703 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit B224_2705 PF00285 Citrate synthase, C-terminal domain B224_2710 PF02801 Beta-ketoacyl synthase, C-terminal domain B224_2710 PF00109 Beta-ketoacyl synthase, N-terminal domain B224_2711 PF05430 S-adenosyl-L-methionine-dependent methyltransferase B224_2711 PF01266 FAD dependent oxidoreductase B224_2717 PF01609 Transposase DDE domain B224_2717 PF13808 DDE_Tnp_1-associated B224_2721 PF01609 Transposase DDE domain B224_2724 PF01695 IstB-like ATP binding protein B224_2725 PF00665 Integrase core domain B224_2728 PF01618 MotA/TolQ/ExbB proton channel family B224_2729 PF00691 OmpA family B224_2729 PF13677 Membrane MotB of proton-channel complex MotA/MotB B224_2731 PF01609 Transposase DDE domain B224_2731 PF13006 Insertion element 4 transposase N-terminal B224_2733 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 B224_2734 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit B224_2737 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit B224_2737 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit B224_2740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region B224_2740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit B224_2741 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B224_2741 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B224_2741 PF00384 Molybdopterin oxidoreductase B224_2744 PF00146 NADH dehydrogenase B224_2745 PF12838 4Fe-4S dicluster domain B224_2746 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 B224_2747 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L B224_2748 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus B224_2748 PF00361 Proton-conducting membrane transporter B224_2749 PF00361 Proton-conducting membrane transporter B224_2751 PF00361 Proton-conducting membrane transporter B224_2753 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain B224_2753 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal B224_2753 PF02769 AIR synthase related protein, C-terminal domain B224_2756 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_2756 PF01464 Transglycosylase SLT domain B224_2760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal B224_2760 PF01926 50S ribosome-binding GTPase B224_2762 PF13360 PQQ-like domain B224_2764 PF09976 Tetratricopeptide repeat-like domain B224_2765 PF03129 Anticodon binding domain B224_2765 PF13393 Histidyl-tRNA synthetase B224_2767 PF04551 GcpE protein B224_2769 PF13464 Domain of unknown function (DUF4115) B224_2773 PF04055 Radical SAM superfamily B224_2774 PF00334 Nucleoside diphosphate kinase B224_2775 PF00883 Cytosol aminopeptidase family, catalytic domain B224_2775 PF12404 Peptidase B224_2777 PF00883 Cytosol aminopeptidase family, catalytic domain B224_2777 PF12404 Peptidase B224_2778 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_2780 PF00012 Hsp70 protein B224_2781 PF00226 DnaJ domain B224_2781 PF07743 HSCB C-terminal oligomerisation domain B224_2783 PF01521 Iron-sulphur cluster biosynthesis B224_2784 PF01592 NifU-like N terminal domain B224_2785 PF00266 Aminotransferase class-V B224_2787 PF02082 Transcriptional regulator B224_2788 PF00588 SpoU rRNA Methylase family B224_2794 PF13181 Tetratricopeptide repeat B224_2794 PF07719 Tetratricopeptide repeat B224_2795 PF00581 Rhodanese-like domain B224_2796 PF02355 Protein export membrane protein B224_2796 PF07549 SecD/SecF GG Motif B224_2798 PF02355 Protein export membrane protein B224_2798 PF13721 SecD export protein N-terminal TM region B224_2798 PF07549 SecD/SecF GG Motif B224_2799 PF02699 Preprotein translocase subunit B224_2801 PF01702 Queuine tRNA-ribosyltransferase B224_2803 PF02547 Queuosine biosynthesis protein B224_2805 PF00571 CBS domain B224_2807 PF10417 C-terminal domain of 1-Cys peroxiredoxin B224_2807 PF00578 AhpC/TSA family B224_2809 PF13192 Thioredoxin domain B224_2809 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_2811 PF07690 Major Facilitator Superfamily B224_2814 PF08241 Methyltransferase domain B224_2816 PF00576 HIUase/Transthyretin family B224_2822 PF12161 HsdM N-terminal domain B224_2822 PF02384 N-6 DNA Methylase B224_2824 PF13737 Transposase DDE domain B224_2829 PF02347 Glycine cleavage system P-protein B224_2830 PF01597 Glycine cleavage H-protein B224_2831 PF01571 Aminomethyltransferase folate-binding domain B224_2831 PF08669 Glycine cleavage T-protein C-terminal barrel domain B224_2832 PF01494 FAD binding domain B224_2834 PF01494 FAD binding domain B224_2835 PF03695 Uncharacterised protein family (UPF0149) B224_2836 PF05164 Cell division protein ZapA B224_2837 PF07690 Major Facilitator Superfamily B224_2840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region B224_2840 PF00005 ABC transporter B224_2841 PF00528 Binding-protein-dependent transport system inner membrane component B224_2841 PF12911 N-terminal TM domain of oligopeptide transport permease C B224_2842 PF00528 Binding-protein-dependent transport system inner membrane component B224_2844 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_2845 PF02798 Glutathione S-transferase, N-terminal domain B224_2845 PF00043 Glutathione S-transferase, C-terminal domain B224_2850 PF00459 Inositol monophosphatase family B224_2851 PF00691 OmpA family B224_2851 PF18393 MotY N-terminal domain B224_2852 PF00672 HAMP domain B224_2852 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_2852 PF12729 Four helix bundle sensory module for signal transduction B224_2857 PF00929 Exonuclease B224_2859 PF03553 Na+/H+ antiporter family B224_2859 PF13726 Na+-H+ antiporter family B224_2862 PF07690 Major Facilitator Superfamily B224_2863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_2863 PF03466 LysR substrate binding domain B224_2866 PF00271 Helicase conserved C-terminal domain B224_2866 PF00270 DEAD/DEAH box helicase B224_2866 PF03880 DbpA RNA binding domain B224_2867 PF03061 Thioesterase superfamily B224_2871 PF13183 4Fe-4S dicluster domain B224_2871 PF01565 FAD binding domain B224_2871 PF02913 FAD linked oxidases, C-terminal domain B224_2873 PF03471 Transporter associated domain B224_2873 PF03741 Integral membrane protein TerC family B224_2876 PF00724 NADH:flavin oxidoreductase / NADH oxidase family B224_2877 PF00962 Adenosine/AMP deaminase B224_2878 PF13344 Haloacid dehalogenase-like hydrolase B224_2880 PF00733 Asparagine synthase B224_2880 PF13537 Glutamine amidotransferase domain B224_2883 PF14497 Glutathione S-transferase, C-terminal domain B224_2883 PF02798 Glutathione S-transferase, N-terminal domain B224_2885 PF04209 homogentisate 1,2-dioxygenase B224_2889 PF04209 homogentisate 1,2-dioxygenase B224_2891 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_2893 PF00849 RNA pseudouridylate synthase B224_2896 PF08448 PAS fold B224_2896 PF00990 Diguanylate cyclase, GGDEF domain B224_2898 PF01609 Transposase DDE domain B224_2898 PF13006 Insertion element 4 transposase N-terminal B224_2899 PF08447 PAS fold B224_2899 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_2901 PF00501 AMP-binding enzyme B224_2901 PF13193 AMP-binding enzyme C-terminal domain B224_2907 PF14870 Photosynthesis system II assembly factor YCF48 B224_2908 PF07044 Protein of unknown function (DUF1329) B224_2911 PF01144 Coenzyme A transferase B224_2912 PF01144 Coenzyme A transferase B224_2914 PF03601 Conserved hypothetical protein 698 B224_2917 PF07690 Major Facilitator Superfamily B224_2921 PF05853 beta-keto acid cleavage enzyme B224_2922 PF02668 Taurine catabolism dioxygenase TauD, TfdA family B224_2923 PF00107 Zinc-binding dehydrogenase B224_2923 PF08240 Alcohol dehydrogenase GroES-like domain B224_2927 PF00285 Citrate synthase, C-terminal domain B224_2929 PF00694 Aconitase C-terminal domain B224_2929 PF00330 Aconitase family (aconitate hydratase) B224_2931 PF04303 PrpF protein B224_2933 PF01027 Inhibitor of apoptosis-promoting Bax1 B224_2935 PF12805 FUSC-like inner membrane protein yccS B224_2937 PF04358 DsrC like protein B224_2938 PF05036 Sporulation related domain B224_2940 PF02875 Mur ligase family, glutamate ligase domain B224_2940 PF08245 Mur ligase middle domain B224_2941 PF01039 Carboxyl transferase domain B224_2941 PF17848 Acetyl-coA carboxylase zinc finger domain B224_2942 PF01416 tRNA pseudouridine synthase B224_2946 PF01118 Semialdehyde dehydrogenase, NAD binding domain B224_2946 PF02774 Semialdehyde dehydrogenase, dimerisation domain B224_2948 PF11890 Domain of unknown function (DUF3410) B224_2948 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B224_2948 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B224_2950 PF01569 PAP2 superfamily B224_2951 PF03180 NLPA lipoprotein B224_2952 PF05598 Transposase domain (DUF772) B224_2952 PF01609 Transposase DDE domain B224_2956 PF00005 ABC transporter B224_2957 PF01695 IstB-like ATP binding protein B224_2958 PF00665 Integrase core domain B224_2959 PF13333 Integrase core domain B224_2959 PF13276 HTH-like domain B224_2959 PF00665 Integrase core domain B224_2961 PF00005 ABC transporter B224_2963 PF02896 PEP-utilising enzyme, TIM barrel domain B224_2963 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain B224_2963 PF00391 PEP-utilising enzyme, mobile domain B224_2964 PF03618 Kinase/pyrophosphorylase B224_2967 PF00324 Amino acid permease B224_2980 PF00664 ABC transporter transmembrane region B224_2980 PF03412 Peptidase C39 family B224_2980 PF00005 ABC transporter B224_2982 PF16199 Radical_SAM C-terminal domain B224_2982 PF04055 Radical SAM superfamily B224_2985 PF04898 Glutamate synthase central domain B224_2985 PF01493 GXGXG motif B224_2985 PF01645 Conserved region in glutamate synthase B224_2985 PF00310 Glutamine amidotransferases class-II B224_2986 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster B224_2986 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_2989 PF09278 MerR, DNA binding B224_2989 PF00376 MerR family regulatory protein B224_2992 PF14521 Lysine-specific metallo-endopeptidase B224_2997 PF00271 Helicase conserved C-terminal domain B224_2997 PF00270 DEAD/DEAH box helicase B224_3001 PF08378 Nuclease-related domain B224_3004 PF07759 Protein of unknown function (DUF1615) B224_3007 PF08502 LeuA allosteric (dimerisation) domain B224_3007 PF00682 HMGL-like B224_3009 PF02142 MGS-like domain B224_3009 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain B224_3009 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B224_3011 PF00117 Glutamine amidotransferase class-I B224_3011 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain B224_3013 PF05173 Dihydrodipicolinate reductase, C-terminus B224_3013 PF01113 Dihydrodipicolinate reductase, N-terminus B224_3017 PF01812 5-formyltetrahydrofolate cyclo-ligase family B224_3018 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) B224_3019 PF01842 ACT domain B224_3019 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B224_3019 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B224_3020 PF01219 Prokaryotic diacylglycerol kinase B224_3021 PF00793 DAHP synthetase I family B224_3022 PF00005 ABC transporter B224_3024 PF01032 FecCD transport family B224_3029 PF00437 Type II/IV secretion system protein B224_3031 PF00483 Nucleotidyl transferase B224_3036 PF07670 Nucleoside recognition B224_3036 PF02421 Ferrous iron transport protein B B224_3036 PF07664 Ferrous iron transport protein B C terminus B224_3037 PF01253 Translation initiation factor SUI1 B224_3038 PF01169 Uncharacterized protein family UPF0016 B224_3048 PF13185 GAF domain B224_3048 PF00990 Diguanylate cyclase, GGDEF domain B224_3051 PF13808 DDE_Tnp_1-associated B224_3051 PF01609 Transposase DDE domain B224_3052 PF05598 Transposase domain (DUF772) B224_3052 PF01609 Transposase DDE domain B224_3054 PF13808 DDE_Tnp_1-associated B224_3054 PF01609 Transposase DDE domain B224_3063 PF01406 tRNA synthetases class I (C) catalytic domain B224_3063 PF09190 DALR domain B224_3064 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD B224_3066 PF00149 Calcineurin-like phosphoesterase B224_3067 PF04226 Transglycosylase associated protein B224_3068 PF00043 Glutathione S-transferase, C-terminal domain B224_3068 PF13417 Glutathione S-transferase, N-terminal domain B224_3070 PF12323 Helix-turn-helix domain B224_3071 PF13737 Transposase DDE domain B224_3073 PF02661 Fic/DOC family B224_3073 PF13784 Fic/DOC family N-terminal B224_3074 PF13808 DDE_Tnp_1-associated B224_3074 PF01609 Transposase DDE domain B224_3079 PF00589 Phage integrase family B224_3080 PF01066 CDP-alcohol phosphatidyltransferase B224_3081 PF01541 GIY-YIG catalytic domain B224_3081 PF08459 UvrC Helix-hairpin-helix N-terminal B224_3081 PF02151 UvrB/uvrC motif B224_3082 PF00196 Bacterial regulatory proteins, luxR family B224_3082 PF00072 Response regulator receiver domain B224_3084 PF02348 Cytidylyltransferase B224_3085 PF03966 Trm112p-like protein B224_3087 PF02606 Tetraacyldisaccharide-1-P 4'-kinase B224_3088 PF00005 ABC transporter B224_3088 PF00664 ABC transporter transmembrane region B224_3089 PF13567 Domain of unknown function (DUF4131) B224_3089 PF00753 Metallo-beta-lactamase superfamily B224_3089 PF03772 Competence protein B224_3092 PF01609 Transposase DDE domain B224_3096 PF00871 Acetokinase family B224_3098 PF04074 YhcH/YjgK/YiaL B224_3102 PF13302 Acetyltransferase (GNAT) domain B224_3103 PF13302 Acetyltransferase (GNAT) domain B224_3110 PF00816 H-NS histone family B224_3112 PF00012 Hsp70 protein B224_3115 PF13276 HTH-like domain B224_3115 PF00665 Integrase core domain B224_3115 PF13333 Integrase core domain B224_3116 PF00665 Integrase core domain B224_3117 PF01695 IstB-like ATP binding protein B224_3121 PF01695 IstB-like ATP binding protein B224_3124 PF00816 H-NS histone family B224_3129 PF11867 Domain of unknown function (DUF3387) B224_3129 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) B224_3129 PF18766 SWI2/SNF2 ATPase B224_3136 PF01609 Transposase DDE domain B224_3137 PF07690 Major Facilitator Superfamily B224_3138 PF02909 Tetracyclin repressor-like, C-terminal domain B224_3138 PF00440 Bacterial regulatory proteins, tetR family B224_3142 PF07282 Putative transposase DNA-binding domain B224_3142 PF12323 Helix-turn-helix domain B224_3142 PF01385 Probable transposase B224_3145 PF01815 Rop protein B224_3150 PF01609 Transposase DDE domain B224_3156 PF01609 Transposase DDE domain B224_3161 PF03772 Competence protein B224_3161 PF00753 Metallo-beta-lactamase superfamily B224_3169 PF05872 Bacterial protein of unknown function (DUF853) B224_3171 PF01609 Transposase DDE domain B224_3171 PF13006 Insertion element 4 transposase N-terminal B224_3173 PF00155 Aminotransferase class I and II B224_3176 PF13609 Gram-negative porin B224_3179 PF06733 DEAD_2 B224_3179 PF13307 Helicase C-terminal domain B224_3181 PF00850 Histone deacetylase domain B224_3182 PF07690 Major Facilitator Superfamily B224_3183 PF01926 50S ribosome-binding GTPase B224_3185 PF00245 Alkaline phosphatase B224_3188 PF00245 Alkaline phosphatase B224_3192 PF01272 Transcription elongation factor, GreA/GreB, C-term B224_3192 PF14760 Rnk N-terminus B224_3193 PF00196 Bacterial regulatory proteins, luxR family B224_3193 PF00072 Response regulator receiver domain B224_3194 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3194 PF07730 Histidine kinase B224_3194 PF05231 MASE1 B224_3195 PF07690 Major Facilitator Superfamily B224_3196 PF00990 Diguanylate cyclase, GGDEF domain B224_3196 PF17151 Periplasmic sensor domain B224_3198 PF07282 Putative transposase DNA-binding domain B224_3198 PF01385 Probable transposase B224_3198 PF12323 Helix-turn-helix domain B224_3200 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_3201 PF00528 Binding-protein-dependent transport system inner membrane component B224_3202 PF00005 ABC transporter B224_3203 PF04116 Fatty acid hydroxylase superfamily B224_3205 PF01609 Transposase DDE domain B224_3205 PF13006 Insertion element 4 transposase N-terminal B224_3208 PF13520 Amino acid permease B224_3212 PF03471 Transporter associated domain B224_3212 PF01595 Cyclin M transmembrane N-terminal domain B224_3212 PF00571 CBS domain B224_3213 PF01895 PhoU domain B224_3216 PF00528 Binding-protein-dependent transport system inner membrane component B224_3219 PF00528 Binding-protein-dependent transport system inner membrane component B224_3221 PF14437 MafB19-like deaminase B224_3223 PF01274 Malate synthase B224_3225 PF00463 Isocitrate lyase family B224_3226 PF01609 Transposase DDE domain B224_3226 PF13006 Insertion element 4 transposase N-terminal B224_3227 PF00308 Bacterial dnaA protein B224_3230 PF02769 AIR synthase related protein, C-terminal domain B224_3230 PF00586 AIR synthase related protein, N-terminal domain B224_3231 PF00551 Formyl transferase B224_3232 PF01784 NIF3 (NGG1p interacting factor 3) B224_3234 PF02954 Bacterial regulatory protein, Fis family B224_3234 PF00158 Sigma-54 interaction domain B224_3236 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3236 PF00512 His Kinase A (phospho-acceptor) domain B224_3236 PF00989 PAS fold B224_3237 PF00158 Sigma-54 interaction domain B224_3237 PF00072 Response regulator receiver domain B224_3237 PF02954 Bacterial regulatory protein, Fis family B224_3240 PF01842 ACT domain B224_3242 PF13089 Polyphosphate kinase N-terminal domain B224_3242 PF02503 Polyphosphate kinase middle domain B224_3242 PF17941 Polyphosphate kinase C-terminal domain 1 B224_3242 PF13090 Polyphosphate kinase C-terminal domain 2 B224_3244 PF02541 Ppx/GppA phosphatase family B224_3246 PF01769 Divalent cation transporter B224_3246 PF03448 MgtE intracellular N domain B224_3246 PF00571 CBS domain B224_3247 PF07282 Putative transposase DNA-binding domain B224_3247 PF01385 Probable transposase B224_3247 PF12323 Helix-turn-helix domain B224_3248 PF00571 CBS domain B224_3248 PF01769 Divalent cation transporter B224_3248 PF03448 MgtE intracellular N domain B224_3249 PF12323 Helix-turn-helix domain B224_3253 PF07196 Flagellin hook IN motif B224_3253 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B224_3254 PF10135 Rod binding protein B224_3254 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase B224_3257 PF02119 Flagellar P-ring protein B224_3258 PF02107 Flagellar L-ring protein B224_3259 PF00460 Flagella basal body rod protein B224_3259 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B224_3260 PF00460 Flagella basal body rod protein B224_3260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B224_3261 PF07559 Flagellar basal body protein FlaE B224_3261 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B224_3261 PF00460 Flagella basal body rod protein B224_3263 PF06429 Flagellar basal body rod FlgEFG protein C-terminal B224_3263 PF00460 Flagella basal body rod protein B224_3264 PF00460 Flagella basal body rod protein B224_3265 PF03705 CheR methyltransferase, all-alpha domain B224_3265 PF01739 CheR methyltransferase, SAM binding domain B224_3266 PF00072 Response regulator receiver domain B224_3266 PF01584 CheW-like domain B224_3267 PF13144 Chaperone for flagella basal body P-ring formation B224_3271 PF12850 Calcineurin-like phosphoesterase superfamily domain B224_3273 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_3275 PF01479 S4 domain B224_3275 PF00849 RNA pseudouridylate synthase B224_3277 PF12323 Helix-turn-helix domain B224_3277 PF01385 Probable transposase B224_3277 PF07282 Putative transposase DNA-binding domain B224_3280 PF00892 EamA-like transporter family B224_3282 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_3287 PF00313 'Cold-shock' DNA-binding domain B224_3290 PF00364 Biotin-requiring enzyme B224_3290 PF02817 e3 binding domain B224_3290 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) B224_3291 PF02780 Transketolase, C-terminal domain B224_3291 PF02779 Transketolase, pyrimidine binding domain B224_3292 PF00676 Dehydrogenase E1 component B224_3293 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family B224_3296 PF05472 DNA replication terminus site-binding protein (Ter protein) B224_3298 PF00176 SNF2 family N-terminal domain B224_3298 PF04434 SWIM zinc finger B224_3298 PF00271 Helicase conserved C-terminal domain B224_3299 PF04337 Protein of unknown function, DUF480 B224_3303 PF06082 Exopolysaccharide biosynthesis protein YbjH B224_3304 PF06251 Capsule biosynthesis GfcC B224_3307 PF13276 HTH-like domain B224_3307 PF00665 Integrase core domain B224_3307 PF13333 Integrase core domain B224_3310 PF13614 AAA domain B224_3310 PF13807 G-rich domain on putative tyrosine kinase B224_3310 PF02706 Chain length determinant protein B224_3311 PF01451 Low molecular weight phosphotyrosine protein phosphatase B224_3312 PF10531 SLBB domain B224_3312 PF18412 Outer-membrane lipoprotein Wza C-terminal domain B224_3312 PF02563 Polysaccharide biosynthesis/export protein B224_3315 PF00535 Glycosyl transferase family 2 B224_3319 PF05598 Transposase domain (DUF772) B224_3319 PF01609 Transposase DDE domain B224_3322 PF13358 DDE superfamily endonuclease B224_3322 PF13592 Winged helix-turn helix B224_3325 PF02397 Bacterial sugar transferase B224_3326 PF01609 Transposase DDE domain B224_3329 PF00483 Nucleotidyl transferase B224_3331 PF04321 RmlD substrate binding domain B224_3333 PF16363 GDP-mannose 4,6 dehydratase B224_3334 PF00486 Transcriptional regulatory protein, C terminal B224_3334 PF00072 Response regulator receiver domain B224_3335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3335 PF08918 PhoQ Sensor B224_3336 PF02685 Glucokinase B224_3338 PF01418 Helix-turn-helix domain, rpiR family B224_3338 PF01380 SIS domain B224_3339 PF02887 Pyruvate kinase, alpha/beta domain B224_3339 PF00224 Pyruvate kinase, barrel domain B224_3343 PF00873 AcrB/AcrD/AcrF family B224_3345 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B224_3345 PF02770 Acyl-CoA dehydrogenase, middle domain B224_3345 PF09317 Domain of unknown function (DUF1974) B224_3345 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B224_3347 PF00440 Bacterial regulatory proteins, tetR family B224_3350 PF05598 Transposase domain (DUF772) B224_3350 PF01609 Transposase DDE domain B224_3351 PF13808 DDE_Tnp_1-associated B224_3351 PF01609 Transposase DDE domain B224_3352 PF02796 Helix-turn-helix domain of resolvase B224_3352 PF00239 Resolvase, N terminal domain B224_3355 PF01695 IstB-like ATP binding protein B224_3356 PF00665 Integrase core domain B224_3357 PF12323 Helix-turn-helix domain B224_3359 PF02321 Outer membrane efflux protein B224_3362 PF00873 AcrB/AcrD/AcrF family B224_3363 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_3363 PF00529 HlyD membrane-fusion protein of T1SS B224_3366 PF08361 MAATS-type transcriptional repressor, C-terminal region B224_3366 PF00440 Bacterial regulatory proteins, tetR family B224_3371 PF00849 RNA pseudouridylate synthase B224_3371 PF01479 S4 domain B224_3372 PF04079 Segregation and condensation complex subunit ScpB B224_3373 PF02616 Segregation and condensation protein ScpA B224_3374 PF01300 Telomere recombination B224_3375 PF02811 PHP domain B224_3377 PF00425 chorismate binding enzyme B224_3377 PF04715 Anthranilate synthase component I, N terminal region B224_3378 PF02885 Glycosyl transferase family, helical bundle domain B224_3378 PF00117 Glutamine amidotransferase class-I B224_3378 PF00591 Glycosyl transferase family, a/b domain B224_3380 PF00591 Glycosyl transferase family, a/b domain B224_3380 PF02885 Glycosyl transferase family, helical bundle domain B224_3381 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase B224_3381 PF00218 Indole-3-glycerol phosphate synthase B224_3383 PF00291 Pyridoxal-phosphate dependent enzyme B224_3384 PF00290 Tryptophan synthase alpha chain B224_3387 PF12323 Helix-turn-helix domain B224_3392 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain B224_3392 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain B224_3392 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain B224_3394 PF00535 Glycosyl transferase family 2 B224_3396 PF00483 Nucleotidyl transferase B224_3397 PF16363 GDP-mannose 4,6 dehydratase B224_3398 PF04321 RmlD substrate binding domain B224_3399 PF00483 Nucleotidyl transferase B224_3402 PF05159 Capsule polysaccharide biosynthesis protein B224_3404 PF05159 Capsule polysaccharide biosynthesis protein B224_3405 PF00528 Binding-protein-dependent transport system inner membrane component B224_3406 PF00528 Binding-protein-dependent transport system inner membrane component B224_3407 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_3408 PF00005 ABC transporter B224_3411 PF03956 Lysine exporter LysO B224_3414 PF01609 Transposase DDE domain B224_3414 PF13006 Insertion element 4 transposase N-terminal B224_3415 PF07282 Putative transposase DNA-binding domain B224_3415 PF01385 Probable transposase B224_3415 PF12323 Helix-turn-helix domain B224_3417 PF03960 ArsC family B224_3418 PF00578 AhpC/TSA family B224_3420 PF13181 Tetratricopeptide repeat B224_3420 PF01435 Peptidase family M48 B224_3422 PF01594 AI-2E family transporter B224_3427 PF01385 Probable transposase B224_3427 PF12323 Helix-turn-helix domain B224_3427 PF07282 Putative transposase DNA-binding domain B224_3429 PF03976 Polyphosphate kinase 2 (PPK2) B224_3430 PF00561 alpha/beta hydrolase fold B224_3432 PF08402 TOBE domain B224_3432 PF00005 ABC transporter B224_3433 PF00528 Binding-protein-dependent transport system inner membrane component B224_3435 PF14785 Maltose transport system permease protein MalF P2 domain B224_3435 PF00528 Binding-protein-dependent transport system inner membrane component B224_3437 PF01547 Bacterial extracellular solute-binding protein B224_3438 PF04245 37-kD nucleoid-associated bacterial protein B224_3439 PF07208 Protein of unknown function (DUF1414) B224_3440 PF00884 Sulfatase B224_3440 PF11893 Domain of unknown function (DUF3413) B224_3443 PF00593 TonB dependent receptor B224_3443 PF07715 TonB-dependent Receptor Plug Domain B224_3444 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain B224_3444 PF00326 Prolyl oligopeptidase family B224_3452 PF03974 Ecotin B224_3453 PF04219 Protein of unknown function, DUF B224_3454 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3454 PF03466 LysR substrate binding domain B224_3456 PF01817 Chorismate mutase type II B224_3456 PF02153 Prephenate dehydrogenase B224_3460 PF00793 DAHP synthetase I family B224_3461 PF03009 Glycerophosphoryl diester phosphodiesterase family B224_3463 PF16901 C-terminal domain of alpha-glycerophosphate oxidase B224_3463 PF01266 FAD dependent oxidoreductase B224_3465 PF08220 DeoR-like helix-turn-helix domain B224_3465 PF00455 DeoR C terminal sensor domain B224_3466 PF07690 Major Facilitator Superfamily B224_3467 PF12323 Helix-turn-helix domain B224_3468 PF13808 DDE_Tnp_1-associated B224_3468 PF01609 Transposase DDE domain B224_3470 PF00230 Major intrinsic protein B224_3473 PF02782 FGGY family of carbohydrate kinases, C-terminal domain B224_3473 PF00370 FGGY family of carbohydrate kinases, N-terminal domain B224_3474 PF03466 LysR substrate binding domain B224_3474 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3482 PF00248 Aldo/keto reductase family B224_3484 PF07690 Major Facilitator Superfamily B224_3486 PF02322 Cytochrome bd terminal oxidase subunit II B224_3488 PF01654 Cytochrome bd terminal oxidase subunit I B224_3489 PF00392 Bacterial regulatory proteins, gntR family B224_3489 PF00155 Aminotransferase class I and II B224_3492 PF08281 Sigma-70, region 4 B224_3492 PF04542 Sigma-70 region 2 B224_3494 PF13006 Insertion element 4 transposase N-terminal B224_3494 PF01609 Transposase DDE domain B224_3497 PF04391 Protein of unknown function (DUF533) B224_3502 PF00892 EamA-like transporter family B224_3503 PF10689 Protein of unknown function (DUF2496) B224_3505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3505 PF03466 LysR substrate binding domain B224_3511 PF00849 RNA pseudouridylate synthase B224_3511 PF01479 S4 domain B224_3512 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain B224_3512 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B224_3519 PF00271 Helicase conserved C-terminal domain B224_3519 PF04851 Type III restriction enzyme, res subunit B224_3520 PF00300 Histidine phosphatase superfamily (branch 1) B224_3522 PF03707 Bacterial signalling protein N terminal repeat B224_3522 PF00990 Diguanylate cyclase, GGDEF domain B224_3522 PF00563 EAL domain B224_3529 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain B224_3529 PF17810 Arginine decarboxylase helical bundle domain B224_3529 PF17944 Arginine decarboxylase C-terminal helical extension B224_3533 PF01546 Peptidase family M20/M25/M40 B224_3533 PF07687 Peptidase dimerisation domain B224_3538 PF01385 Probable transposase B224_3538 PF12323 Helix-turn-helix domain B224_3538 PF07282 Putative transposase DNA-binding domain B224_3542 PF04264 YceI-like domain B224_3544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3544 PF03466 LysR substrate binding domain B224_3547 PF01268 Formate--tetrahydrofolate ligase B224_3550 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_3550 PF17200 Single Cache domain 2 B224_3550 PF00672 HAMP domain B224_3551 PF01227 GTP cyclohydrolase I B224_3552 PF03454 MoeA C-terminal region (domain IV) B224_3552 PF00994 Probable molybdopterin binding domain B224_3552 PF03453 MoeA N-terminal region (domain I and II) B224_3555 PF00899 ThiF family B224_3557 PF00561 alpha/beta hydrolase fold B224_3559 PF03459 TOBE domain B224_3559 PF00005 ABC transporter B224_3560 PF00528 Binding-protein-dependent transport system inner membrane component B224_3562 PF02391 MoaE protein B224_3563 PF02597 ThiS family B224_3564 PF01967 MoaC family B224_3566 PF00994 Probable molybdopterin binding domain B224_3567 PF03264 NapC/NirT cytochrome c family, N-terminal region B224_3569 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) B224_3570 PF12801 4Fe-4S binding domain B224_3570 PF13237 4Fe-4S dicluster domain B224_3571 PF12800 4Fe-4S binding domain B224_3571 PF12838 4Fe-4S dicluster domain B224_3573 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B224_3573 PF00384 Molybdopterin oxidoreductase B224_3573 PF01568 Molydopterin dinucleotide binding domain B224_3573 PF10518 TAT (twin-arginine translocation) pathway signal sequence B224_3576 PF12838 4Fe-4S dicluster domain B224_3576 PF13187 4Fe-4S dicluster domain B224_3577 PF06463 Molybdenum Cofactor Synthesis C B224_3577 PF04055 Radical SAM superfamily B224_3579 PF00672 HAMP domain B224_3579 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3579 PF07730 Histidine kinase B224_3579 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term B224_3580 PF00072 Response regulator receiver domain B224_3580 PF00196 Bacterial regulatory proteins, luxR family B224_3584 PF00672 HAMP domain B224_3584 PF00512 His Kinase A (phospho-acceptor) domain B224_3584 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3584 PF01627 Hpt domain B224_3584 PF00072 Response regulator receiver domain B224_3584 PF17149 Periplasmic sensor domain found in signal transduction proteins B224_3588 PF01933 Uncharacterised protein family UPF0052 B224_3590 PF13230 Glutamine amidotransferases class-II B224_3591 PF13580 SIS domain B224_3593 PF09317 Domain of unknown function (DUF1974) B224_3593 PF00441 Acyl-CoA dehydrogenase, C-terminal domain B224_3593 PF02770 Acyl-CoA dehydrogenase, middle domain B224_3593 PF02771 Acyl-CoA dehydrogenase, N-terminal domain B224_3595 PF11849 Domain of unknown function (DUF3369) B224_3598 PF00929 Exonuclease B224_3600 PF00075 RNase H B224_3601 PF08241 Methyltransferase domain B224_3602 PF16123 Hydroxyacylglutathione hydrolase C-terminus B224_3602 PF00753 Metallo-beta-lactamase superfamily B224_3603 PF01476 LysM domain B224_3603 PF01464 Transglycosylase SLT domain B224_3605 PF03372 Endonuclease/Exonuclease/phosphatase family B224_3607 PF03061 Thioesterase superfamily B224_3609 PF00356 Bacterial regulatory proteins, lacI family B224_3611 PF14718 Soluble lytic murein transglycosylase L domain B224_3611 PF01464 Transglycosylase SLT domain B224_3616 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein B224_3621 PF04357 TamB, inner membrane protein subunit of TAM complex B224_3623 PF01103 Surface antigen B224_3623 PF07244 Surface antigen variable number repeat B224_3623 PF17243 POTRA domain TamA domain 1 B224_3627 PF02627 Carboxymuconolactone decarboxylase family B224_3629 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B224_3629 PF00403 Heavy-metal-associated domain B224_3629 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_3631 PF13416 Bacterial extracellular solute-binding protein B224_3634 PF00005 ABC transporter B224_3635 PF01066 CDP-alcohol phosphatidyltransferase B224_3637 PF13406 Transglycosylase SLT domain B224_3639 PF01047 MarR family B224_3643 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III B224_3643 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II B224_3643 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I B224_3643 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain B224_3644 PF03925 SeqA protein C-terminal domain B224_3644 PF17206 SeqA protein N-terminal domain B224_3645 PF00561 alpha/beta hydrolase fold B224_3647 PF01402 Ribbon-helix-helix protein, copG family B224_3648 PF00258 Flavodoxin B224_3650 PF01475 Ferric uptake regulator family B224_3651 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain B224_3651 PF00749 tRNA synthetases class I (E and Q), catalytic domain B224_3655 PF02838 Glycosyl hydrolase family 20, domain 2 B224_3655 PF03173 Putative carbohydrate binding domain B224_3655 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain B224_3655 PF00728 Glycosyl hydrolase family 20, catalytic domain B224_3656 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B224_3656 PF00367 phosphotransferase system, EIIB B224_3656 PF02378 Phosphotransferase system, EIIC B224_3657 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase B224_3659 PF01979 Amidohydrolase family B224_3660 PF00480 ROK family B224_3660 PF01047 MarR family B224_3662 PF00884 Sulfatase B224_3662 PF08019 Phosphoethanolamine transferase EptA/EptB B224_3663 PF01709 Transcriptional regulator B224_3665 PF02938 GAD domain B224_3665 PF00152 tRNA synthetases class II (D, K and N) B224_3665 PF01336 OB-fold nucleic acid binding domain B224_3666 PF01904 Protein of unknown function DUF72 B224_3667 PF13649 Methyltransferase domain B224_3668 PF08003 Protein of unknown function (DUF1698) B224_3673 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3673 PF03466 LysR substrate binding domain B224_3674 PF00877 NlpC/P60 family B224_3676 PF00171 Aldehyde dehydrogenase family B224_3678 PF17932 Tetracyclin repressor-like, C-terminal domain B224_3678 PF00440 Bacterial regulatory proteins, tetR family B224_3680 PF00465 Iron-containing alcohol dehydrogenase B224_3681 PF00291 Pyridoxal-phosphate dependent enzyme B224_3686 PF01554 MatE B224_3689 PF04325 Protein of unknown function (DUF465) B224_3690 PF10371 Domain of unknown function B224_3690 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II B224_3690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B224_3690 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase B224_3690 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg B224_3692 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_3692 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region B224_3692 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster B224_3694 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_3694 PF03476 MOSC N-terminal beta barrel domain B224_3694 PF03473 MOSC domain B224_3694 PF03476 MOSC N-terminal beta barrel domain B224_3694 PF03473 MOSC domain B224_3694 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_3696 PF01435 Peptidase family M48 B224_3698 PF12697 Alpha/beta hydrolase family B224_3698 PF08241 Methyltransferase domain B224_3699 PF00155 Aminotransferase class I and II B224_3702 PF06968 Biotin and Thiamin Synthesis associated domain B224_3702 PF04055 Radical SAM superfamily B224_3703 PF00202 Aminotransferase class-III B224_3708 PF00152 tRNA synthetases class II (D, K and N) B224_3708 PF01336 OB-fold nucleic acid binding domain B224_3710 PF03605 Anaerobic c4-dicarboxylate membrane transporter B224_3716 PF03960 ArsC family B224_3717 PF07687 Peptidase dimerisation domain B224_3717 PF01546 Peptidase family M20/M25/M40 B224_3719 PF02557 D-alanyl-D-alanine carboxypeptidase B224_3723 PF03471 Transporter associated domain B224_3723 PF02080 TrkA-C domain B224_3723 PF00999 Sodium/hydrogen exchanger family B224_3726 PF03471 Transporter associated domain B224_3726 PF00999 Sodium/hydrogen exchanger family B224_3726 PF02080 TrkA-C domain B224_3728 PF01810 LysE type translocator B224_3729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_3729 PF00672 HAMP domain B224_3729 PF12729 Four helix bundle sensory module for signal transduction B224_3730 PF07509 Protein of unknown function (DUF1523) B224_3733 PF01156 Inosine-uridine preferring nucleoside hydrolase B224_3734 PF00849 RNA pseudouridylate synthase B224_3735 PF01048 Phosphorylase superfamily B224_3737 PF04355 SmpA / OmlA family B224_3738 PF13460 NAD(P)H-binding B224_3741 PF03364 Polyketide cyclase / dehydrase and lipid transport B224_3742 PF01668 SmpB protein B224_3743 PF13356 Arm DNA-binding domain B224_3743 PF00589 Phage integrase family B224_3748 PF13362 Toprim domain B224_3748 PF08401 Domain of unknown function (DUF1738) B224_3748 PF18818 Metallopeptidase superfamily domain B224_3750 PF15919 HicB_like antitoxin of bacterial toxin-antitoxin system B224_3752 PF12161 HsdM N-terminal domain B224_3752 PF02384 N-6 DNA Methylase B224_3755 PF08463 EcoEI R protein C-terminal B224_3755 PF04851 Type III restriction enzyme, res subunit B224_3755 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) B224_3755 PF00271 Helicase conserved C-terminal domain B224_3758 PF13508 Acetyltransferase (GNAT) domain B224_3764 PF01546 Peptidase family M20/M25/M40 B224_3769 PF03737 Aldolase/RraA B224_3772 PF00072 Response regulator receiver domain B224_3772 PF00486 Transcriptional regulatory protein, C terminal B224_3775 PF00664 ABC transporter transmembrane region B224_3775 PF00005 ABC transporter B224_3778 PF00005 ABC transporter B224_3778 PF00664 ABC transporter transmembrane region B224_3782 PF01980 tRNA-methyltransferase O B224_3782 PF18389 TrmO C-terminal domain B224_3784 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III B224_3784 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal B224_3787 PF17862 AAA+ lid domain B224_3787 PF01434 Peptidase family M41 B224_3787 PF00004 ATPase family associated with various cellular activities (AAA) B224_3788 PF00291 Pyridoxal-phosphate dependent enzyme B224_3789 PF00381 PTS HPr component phosphorylation site B224_3791 PF02896 PEP-utilising enzyme, TIM barrel domain B224_3791 PF05524 PEP-utilising enzyme, N-terminal B224_3791 PF00391 PEP-utilising enzyme, mobile domain B224_3792 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 B224_3793 PF01292 Prokaryotic cytochrome b561 B224_3794 PF01609 Transposase DDE domain B224_3794 PF13006 Insertion element 4 transposase N-terminal B224_3798 PF00149 Calcineurin-like phosphoesterase B224_3798 PF12320 Type 5 capsule protein repressor C-terminal domain B224_3799 PF13673 Acetyltransferase (GNAT) domain B224_3801 PF04381 Putative exonuclease, RdgC B224_3803 PF13472 GDSL-like Lipase/Acylhydrolase family B224_3808 PF01266 FAD dependent oxidoreductase B224_3809 PF01381 Helix-turn-helix B224_3809 PF07883 Cupin domain B224_3811 PF00171 Aldehyde dehydrogenase family B224_3813 PF00202 Aminotransferase class-III B224_3816 PF00324 Amino acid permease B224_3818 PF13520 Amino acid permease B224_3821 PF02690 Na+/Pi-cotransporter B224_3823 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_3823 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase B224_3824 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase B224_3827 PF00512 His Kinase A (phospho-acceptor) domain B224_3827 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3827 PF00072 Response regulator receiver domain B224_3827 PF00989 PAS fold B224_3827 PF01627 Hpt domain B224_3827 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_3829 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 B224_3829 PF01610 Transposase B224_3829 PF13542 Helix-turn-helix domain of transposase family ISL3 B224_3830 PF10725 Protein of unknown function (DUF2517) B224_3835 PF00512 His Kinase A (phospho-acceptor) domain B224_3835 PF09308 LuxQ, periplasmic B224_3835 PF00072 Response regulator receiver domain B224_3835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3838 PF03466 LysR substrate binding domain B224_3838 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_3839 PF02129 X-Pro dipeptidyl-peptidase (S15 family) B224_3842 PF07690 Major Facilitator Superfamily B224_3846 PF13442 Cytochrome C oxidase, cbb3-type, subunit III B224_3847 PF02416 mttA/Hcf106 family B224_3849 PF05573 NosL B224_3850 PF12679 ABC-2 family transporter protein B224_3851 PF00005 ABC transporter B224_3853 PF05048 Periplasmic copper-binding protein (NosD) B224_3855 PF00116 Cytochrome C oxidase subunit II, periplasmic domain B224_3855 PF18764 Nitrous oxide reductase propeller repeat B224_3855 PF18793 Nitrous oxide reductase propeller repeat 2 B224_3858 PF12801 4Fe-4S binding domain B224_3858 PF04205 FMN-binding domain B224_3861 PF13808 DDE_Tnp_1-associated B224_3861 PF01609 Transposase DDE domain B224_3862 PF12801 4Fe-4S binding domain B224_3862 PF04205 FMN-binding domain B224_3863 PF01380 SIS domain B224_3863 PF01418 Helix-turn-helix domain, rpiR family B224_3864 PF01476 LysM domain B224_3864 PF17969 L,D-transpeptidase C-terminal domain B224_3864 PF03734 L,D-transpeptidase catalytic domain B224_3869 PF05971 RNA methyltransferase B224_3870 PF00877 NlpC/P60 family B224_3871 PF01648 4'-phosphopantetheinyl transferase superfamily B224_3873 PF00085 Thioredoxin B224_3875 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase B224_3876 PF01842 ACT domain B224_3876 PF00551 Formyl transferase B224_3881 PF13396 Phospholipase_D-nuclease N-terminal B224_3881 PF13091 PLD-like domain B224_3885 PF10145 Phage-related minor tail protein B224_3885 PF01464 Transglycosylase SLT domain B224_3885 PF01551 Peptidase family M23 B224_3888 PF02075 Crossover junction endodeoxyribonuclease RuvC B224_3889 PF01408 Oxidoreductase family, NAD-binding Rossmann fold B224_3898 PF04055 Radical SAM superfamily B224_3898 PF08497 Radical SAM N-terminal B224_3898 PF11842 Domain of unknown function (DUF3362) B224_3900 PF00873 AcrB/AcrD/AcrF family B224_3903 PF05230 MASE2 domain B224_3903 PF00990 Diguanylate cyclase, GGDEF domain B224_3904 PF01734 Patatin-like phospholipase B224_3906 PF00209 Sodium:neurotransmitter symporter family B224_3911 PF00691 OmpA family B224_3911 PF01389 OmpA-like transmembrane domain B224_3913 PF00691 OmpA family B224_3913 PF01389 OmpA-like transmembrane domain B224_3915 PF00691 OmpA family B224_3915 PF01389 OmpA-like transmembrane domain B224_3918 PF03949 Malic enzyme, NAD binding domain B224_3918 PF00390 Malic enzyme, N-terminal domain B224_3919 PF12833 Helix-turn-helix domain B224_3921 PF01554 MatE B224_3923 PF10692 Protein of unknown function (DUF2498) B224_3925 PF00990 Diguanylate cyclase, GGDEF domain B224_3925 PF00072 Response regulator receiver domain B224_3926 PF00860 Permease family B224_3930 PF01235 Sodium:alanine symporter family B224_3931 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain B224_3931 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain B224_3933 PF01699 Sodium/calcium exchanger protein B224_3935 PF08534 Redoxin B224_3936 PF00293 NUDIX domain B224_3938 PF00005 ABC transporter B224_3939 PF00528 Binding-protein-dependent transport system inner membrane component B224_3944 PF00528 Binding-protein-dependent transport system inner membrane component B224_3946 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_3949 PF00005 ABC transporter B224_3950 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_3950 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase B224_3952 PF03932 CutC family B224_3954 PF00480 ROK family B224_3956 PF01435 Peptidase family M48 B224_3958 PF12849 PBP superfamily domain B224_3960 PF11808 Phosphate regulon sensor protein PhoR B224_3960 PF00989 PAS fold B224_3960 PF00512 His Kinase A (phospho-acceptor) domain B224_3960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3961 PF00072 Response regulator receiver domain B224_3961 PF00486 Transcriptional regulatory protein, C terminal B224_3962 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_3964 PF17158 Membrane-associated sensor, integral membrane domain B224_3964 PF00990 Diguanylate cyclase, GGDEF domain B224_3966 PF00158 Sigma-54 interaction domain B224_3966 PF02954 Bacterial regulatory protein, Fis family B224_3966 PF01590 GAF domain B224_3968 PF00171 Aldehyde dehydrogenase family B224_3971 PF00892 EamA-like transporter family B224_3973 PF00072 Response regulator receiver domain B224_3973 PF12431 Transcriptional regulator B224_3976 PF00989 PAS fold B224_3976 PF17203 Single cache domain 3 B224_3976 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain B224_3976 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_3977 PF00390 Malic enzyme, N-terminal domain B224_3977 PF03949 Malic enzyme, NAD binding domain B224_3978 PF03390 2-hydroxycarboxylate transporter family B224_3979 PF01047 MarR family B224_3981 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_3981 PF00529 HlyD membrane-fusion protein of T1SS B224_3986 PF01609 Transposase DDE domain B224_3986 PF13006 Insertion element 4 transposase N-terminal B224_3988 PF01679 Proteolipid membrane potential modulator B224_3991 PF13597 Anaerobic ribonucleoside-triphosphate reductase B224_3991 PF03477 ATP cone domain B224_3995 PF00533 BRCA1 C Terminus (BRCT) domain B224_3995 PF12826 Helix-hairpin-helix motif B224_3995 PF03120 NAD-dependent DNA ligase OB-fold domain B224_3995 PF03119 NAD-dependent DNA ligase C4 zinc finger domain B224_3995 PF01653 NAD-dependent DNA ligase adenylation domain B224_3996 PF04354 ZipA, C-terminal FtsZ-binding domain B224_3997 PF02463 RecF/RecN/SMC N terminal domain B224_3997 PF06470 SMC proteins Flexible Hinge Domain B224_3999 PF03458 UPF0126 domain B224_4003 PF05951 Bacterial protein of unknown function (DUF882) B224_4004 PF03734 L,D-transpeptidase catalytic domain B224_4004 PF01471 Putative peptidoglycan binding domain B224_4009 PF00535 Glycosyl transferase family 2 B224_4013 PF00128 Alpha amylase, catalytic domain B224_4017 PF00072 Response regulator receiver domain B224_4017 PF00196 Bacterial regulatory proteins, luxR family B224_4024 PF02254 TrkA-N domain B224_4024 PF02080 TrkA-C domain B224_4024 PF00999 Sodium/hydrogen exchanger family B224_4025 PF00990 Diguanylate cyclase, GGDEF domain B224_4026 PF01171 PP-loop family B224_4026 PF09179 TilS substrate binding domain B224_4026 PF11734 TilS substrate C-terminal domain B224_4027 PF01431 Peptidase family M13 B224_4027 PF05649 Peptidase family M13 B224_4033 PF01609 Transposase DDE domain B224_4033 PF13006 Insertion element 4 transposase N-terminal B224_4035 PF13520 Amino acid permease B224_4038 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4038 PF03466 LysR substrate binding domain B224_4040 PF13006 Insertion element 4 transposase N-terminal B224_4040 PF01609 Transposase DDE domain B224_4041 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit B224_4044 PF02811 PHP domain B224_4044 PF14579 Helix-hairpin-helix motif B224_4044 PF17657 Bacterial DNA polymerase III alpha subunit finger domain B224_4044 PF07733 Bacterial DNA polymerase III alpha NTPase domain B224_4044 PF01336 OB-fold nucleic acid binding domain B224_4045 PF01351 Ribonuclease HII B224_4047 PF02684 Lipid-A-disaccharide synthetase B224_4048 PF00132 Bacterial transferase hexapeptide (six repeats) B224_4048 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 B224_4049 PF07977 FabA-like domain B224_4050 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD B224_4050 PF00132 Bacterial transferase hexapeptide (six repeats) B224_4053 PF03938 Outer membrane protein (OmpH-like) B224_4055 PF01103 Surface antigen B224_4055 PF07244 Surface antigen variable number repeat B224_4056 PF02163 Peptidase family M50 B224_4056 PF17820 PDZ domain B224_4058 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain B224_4058 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase B224_4058 PF13288 DXP reductoisomerase C-terminal domain B224_4060 PF01255 Putative undecaprenyl diphosphate synthase B224_4061 PF01765 Ribosome recycling factor B224_4062 PF00696 Amino acid kinase family B224_4064 PF00889 Elongation factor TS B224_4065 PF00318 Ribosomal protein S2 B224_4066 PF00557 Metallopeptidase family M24 B224_4068 PF01842 ACT domain B224_4068 PF01909 Nucleotidyltransferase domain B224_4068 PF08335 GlnD PII-uridylyltransferase B224_4068 PF01966 HD domain B224_4070 PF00132 Bacterial transferase hexapeptide (six repeats) B224_4070 PF14602 Hexapeptide repeat of succinyl-transferase B224_4070 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal B224_4071 PF11944 Protein of unknown function (DUF3461) B224_4073 PF02378 Phosphotransferase system, EIIC B224_4073 PF00367 phosphotransferase system, EIIB B224_4074 PF07148 Maltose operon periplasmic protein precursor (MalM) B224_4075 PF02264 LamB porin B224_4076 PF00258 Flavodoxin B224_4077 PF00849 RNA pseudouridylate synthase B224_4078 PF04287 tRNA pseudouridine synthase C B224_4084 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) B224_4086 PF07348 Syd protein (SUKH-2) B224_4087 PF14489 QueF-like protein B224_4087 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term B224_4092 PF00990 Diguanylate cyclase, GGDEF domain B224_4092 PF05230 MASE2 domain B224_4093 PF03641 Possible lysine decarboxylase B224_4093 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases B224_4093 PF11892 Domain of unknown function (DUF3412) B224_4094 PF01367 5'-3' exonuclease, C-terminal SAM fold B224_4094 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain B224_4096 PF18324 Hypothetical protein TT1725 B224_4096 PF00180 Isocitrate/isopropylmalate dehydrogenase B224_4098 PF18125 RlmM ferredoxin-like domain B224_4098 PF01728 FtsJ-like methyltransferase B224_4100 PF04241 Protein of unknown function (DUF423) B224_4102 PF03466 LysR substrate binding domain B224_4102 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4104 PF00672 HAMP domain B224_4104 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_4105 PF11798 IMS family HHH motif B224_4105 PF11799 impB/mucB/samB family C-terminal domain B224_4105 PF00817 impB/mucB/samB family B224_4108 PF02424 ApbE family B224_4109 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_4109 PF00175 Oxidoreductase NAD-binding domain B224_4109 PF00970 Oxidoreductase FAD-binding domain B224_4112 PF02508 Rnf-Nqr subunit, membrane protein B224_4114 PF02508 Rnf-Nqr subunit, membrane protein B224_4116 PF04205 FMN-binding domain B224_4117 PF03116 NQR2, RnfD, RnfE family B224_4119 PF11973 NQRA C-terminal domain B224_4119 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) B224_4121 PF01722 BolA-like protein B224_4122 PF05175 Methyltransferase small domain B224_4125 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD B224_4128 PF07690 Major Facilitator Superfamily B224_4129 PF03502 Nucleoside-specific channel-forming protein, Tsx B224_4131 PF04461 Protein of unknown function (DUF520) B224_4132 PF08546 Ketopantoate reductase PanE/ApbA C terminal B224_4132 PF02558 Ketopantoate reductase PanE/ApbA B224_4133 PF01965 DJ-1/PfpI family B224_4136 PF01609 Transposase DDE domain B224_4136 PF05598 Transposase domain (DUF772) B224_4144 PF04717 Type VI secretion system, phage-baseplate injector B224_4145 PF05638 Type VI secretion system effector, Hcp B224_4148 PF00196 Bacterial regulatory proteins, luxR family B224_4148 PF03472 Autoinducer binding domain B224_4149 PF00916 Sulfate permease family B224_4149 PF01740 STAS domain B224_4157 PF04542 Sigma-70 region 2 B224_4157 PF04545 Sigma-70, region 4 B224_4158 PF03960 ArsC family B224_4160 PF01758 Sodium Bile acid symporter family B224_4167 PF16363 GDP-mannose 4,6 dehydratase B224_4168 PF00175 Oxidoreductase NAD-binding domain B224_4168 PF00111 2Fe-2S iron-sulfur cluster binding domain B224_4168 PF00970 Oxidoreductase FAD-binding domain B224_4169 PF03063 Prismane/CO dehydrogenase family B224_4171 PF00210 Ferritin-like domain B224_4182 PF00106 short chain dehydrogenase B224_4184 PF03441 FAD binding domain of DNA photolyase B224_4184 PF00875 DNA photolyase B224_4186 PF13411 MerR HTH family regulatory protein B224_4187 PF08349 Protein of unknown function (DUF1722) B224_4194 PF00800 Prephenate dehydratase B224_4194 PF01817 Chorismate mutase type II B224_4201 PF02264 LamB porin B224_4202 PF01609 Transposase DDE domain B224_4202 PF13808 DDE_Tnp_1-associated B224_4205 PF13808 DDE_Tnp_1-associated B224_4205 PF01609 Transposase DDE domain B224_4206 PF01609 Transposase DDE domain B224_4207 PF04616 Glycosyl hydrolases family 43 B224_4207 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain B224_4209 PF17912 MalK OB fold domain B224_4209 PF00005 ABC transporter B224_4211 PF00528 Binding-protein-dependent transport system inner membrane component B224_4212 PF00528 Binding-protein-dependent transport system inner membrane component B224_4217 PF03976 Polyphosphate kinase 2 (PPK2) B224_4220 PF00916 Sulfate permease family B224_4220 PF01740 STAS domain B224_4222 PF07995 Glucose / Sorbosone dehydrogenase B224_4224 PF08220 DeoR-like helix-turn-helix domain B224_4224 PF00455 DeoR C terminal sensor domain B224_4225 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase B224_4225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase B224_4226 PF17042 Nucleotide-binding C-terminal domain B224_4226 PF07005 Sugar-binding N-terminal domain B224_4227 PF00596 Class II Aldolase and Adducin N-terminal domain B224_4228 PF01261 Xylose isomerase-like TIM barrel B224_4230 PF01370 NAD dependent epimerase/dehydratase family B224_4232 PF02447 GntP family permease B224_4234 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_4235 PF03573 outer membrane porin, OprD family B224_4237 PF00106 short chain dehydrogenase B224_4242 PF02074 Carboxypeptidase Taq (M32) metallopeptidase B224_4244 PF02805 Metal binding domain of Ada B224_4244 PF12833 Helix-turn-helix domain B224_4244 PF00730 HhH-GPD superfamily base excision DNA repair protein B224_4244 PF06029 AlkA N-terminal domain B224_4245 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain B224_4245 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain B224_4247 PF06906 Protein of unknown function (DUF1272) B224_4249 PF01136 Peptidase family U32 B224_4249 PF12392 Collagenase B224_4252 PF01810 LysE type translocator B224_4254 PF03466 LysR substrate binding domain B224_4254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4258 PF00563 EAL domain B224_4258 PF01590 GAF domain B224_4258 PF00990 Diguanylate cyclase, GGDEF domain B224_4258 PF00989 PAS fold B224_4263 PF00384 Molybdopterin oxidoreductase B224_4263 PF04879 Molybdopterin oxidoreductase Fe4S4 domain B224_4263 PF01568 Molydopterin dinucleotide binding domain B224_4265 PF03916 Polysulphide reductase, NrfD B224_4266 PF13247 4Fe-4S dicluster domain B224_4268 PF00196 Bacterial regulatory proteins, luxR family B224_4268 PF00072 Response regulator receiver domain B224_4269 PF03575 Peptidase family S51 B224_4270 PF00206 Lyase B224_4270 PF10415 Fumarase C C-terminus B224_4276 PF18327 Proline utilization A proline dehydrogenase N-terminal domain B224_4276 PF01619 Proline dehydrogenase B224_4276 PF14850 DNA-binding domain of Proline dehydrogenase B224_4276 PF00171 Aldehyde dehydrogenase family B224_4278 PF13006 Insertion element 4 transposase N-terminal B224_4278 PF01609 Transposase DDE domain B224_4279 PF01168 Alanine racemase, N-terminal domain B224_4279 PF00842 Alanine racemase, C-terminal domain B224_4280 PF03796 DnaB-like helicase C terminal domain B224_4280 PF00772 DnaB-like helicase N terminal domain B224_4285 PF00149 Calcineurin-like phosphoesterase B224_4285 PF02872 5'-nucleotidase, C-terminal domain B224_4290 PF00158 Sigma-54 interaction domain B224_4290 PF02954 Bacterial regulatory protein, Fis family B224_4290 PF00072 Response regulator receiver domain B224_4291 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase B224_4291 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_4293 PF04102 SlyX B224_4294 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_4296 PF09526 Probable metal-binding protein (DUF2387) B224_4298 PF00072 Response regulator receiver domain B224_4298 PF01584 CheW-like domain B224_4300 PF00561 alpha/beta hydrolase fold B224_4301 PF01590 GAF domain B224_4301 PF00990 Diguanylate cyclase, GGDEF domain B224_4301 PF00360 Phytochrome region B224_4301 PF00563 EAL domain B224_4305 PF06794 Uncharacterised protein family (UPF0270) B224_4306 PF00485 Phosphoribulokinase / Uridine kinase family B224_4309 PF02566 OsmC-like protein B224_4310 PF13545 Crp-like helix-turn-helix domain B224_4310 PF00027 Cyclic nucleotide-binding domain B224_4312 PF08241 Methyltransferase domain B224_4314 PF17945 Beta/Gamma crystallin B224_4314 PF12561 ToxR activated gene A lipoprotein domain B224_4317 PF00704 Glycosyl hydrolases family 18 B224_4317 PF08329 Chitinase A, N-terminal domain B224_4318 PF00512 His Kinase A (phospho-acceptor) domain B224_4318 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_4320 PF12832 MFS_1 like family B224_4324 PF00593 TonB dependent receptor B224_4324 PF07715 TonB-dependent Receptor Plug Domain B224_4324 PF04886 PT repeat B224_4325 PF13737 Transposase DDE domain B224_4334 PF01243 Pyridoxamine 5'-phosphate oxidase B224_4335 PF06228 Haem utilisation ChuX/HutX B224_4337 PF01032 FecCD transport family B224_4338 PF00005 ABC transporter B224_4341 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain B224_4341 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain B224_4341 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain B224_4343 PF01370 NAD dependent epimerase/dehydratase family B224_4345 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase B224_4348 PF00535 Glycosyl transferase family 2 B224_4350 PF01464 Transglycosylase SLT domain B224_4352 PF00005 ABC transporter B224_4352 PF12848 ABC transporter B224_4355 PF00860 Permease family B224_4356 PF01609 Transposase DDE domain B224_4356 PF13006 Insertion element 4 transposase N-terminal B224_4357 PF05099 Tellurite resistance protein TerB B224_4357 PF00226 DnaJ domain B224_4359 PF00483 Nucleotidyl transferase B224_4360 PF01636 Phosphotransferase enzyme family B224_4361 PF03968 OstA-like protein B224_4361 PF04453 LPS transport system D B224_4363 PF00639 PPIC-type PPIASE domain B224_4363 PF09312 SurA N-terminal domain B224_4365 PF04166 Pyridoxal phosphate biosynthetic protein PdxA B224_4366 PF00398 Ribosomal RNA adenine dimethylase B224_4367 PF04379 ApaG domain B224_4368 PF00149 Calcineurin-like phosphoesterase B224_4371 PF00296 Luciferase-like monooxygenase B224_4377 PF01018 GTP1/OBG B224_4377 PF01926 50S ribosome-binding GTPase B224_4378 PF00829 Ribosomal prokaryotic L21 protein B224_4379 PF00348 Polyprenyl synthetase B224_4380 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) B224_4381 PF01145 SPFH domain / Band 7 family B224_4383 PF12221 Bacterial membrane protein N terminal B224_4383 PF01145 SPFH domain / Band 7 family B224_4384 PF13167 GTP-binding GTPase N-terminal B224_4384 PF01926 50S ribosome-binding GTPase B224_4384 PF16360 GTP-binding GTPase Middle Region B224_4385 PF17209 Hfq protein B224_4389 PF01119 DNA mismatch repair protein, C-terminal domain B224_4389 PF08676 MutL C terminal dimerisation domain B224_4391 PF01520 N-acetylmuramoyl-L-alanine amidase B224_4392 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE B224_4393 PF01256 Carbohydrate kinase B224_4393 PF03853 YjeF-related protein N-terminus B224_4394 PF08331 Domain of unknown function (DUF1730) B224_4396 PF00480 ROK family B224_4400 PF09383 NIL domain B224_4400 PF00005 ABC transporter B224_4402 PF00528 Binding-protein-dependent transport system inner membrane component B224_4404 PF03180 NLPA lipoprotein B224_4406 PF13006 Insertion element 4 transposase N-terminal B224_4406 PF01609 Transposase DDE domain B224_4407 PF02357 Transcription termination factor nusG B224_4409 PF00672 HAMP domain B224_4409 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_4410 PF00563 EAL domain B224_4410 PF00990 Diguanylate cyclase, GGDEF domain B224_4410 PF03707 Bacterial signalling protein N terminal repeat B224_4412 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_4412 PF09456 RcsC Alpha-Beta-Loop (ABL) B224_4412 PF00072 Response regulator receiver domain B224_4412 PF00512 His Kinase A (phospho-acceptor) domain B224_4418 PF01609 Transposase DDE domain B224_4421 PF00563 EAL domain B224_4421 PF03707 Bacterial signalling protein N terminal repeat B224_4421 PF00990 Diguanylate cyclase, GGDEF domain B224_4421 PF13188 PAS domain B224_4423 PF13286 Phosphohydrolase-associated domain B224_4423 PF01966 HD domain B224_4424 PF00512 His Kinase A (phospho-acceptor) domain B224_4424 PF18415 Histidine kinase receptor ArcB trans-membrane domain B224_4424 PF00989 PAS fold B224_4424 PF00072 Response regulator receiver domain B224_4424 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_4424 PF01627 Hpt domain B224_4431 PF03466 LysR substrate binding domain B224_4431 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4436 PF01259 SAICAR synthetase B224_4438 PF06804 NlpB/DapX lipoprotein B224_4440 PF00701 Dihydrodipicolinate synthetase family B224_4442 PF01842 ACT domain B224_4443 PF00578 AhpC/TSA family B224_4446 PF03887 YfbU domain B224_4448 PF04217 Protein of unknown function, DUF412 B224_4449 PF00871 Acetokinase family B224_4452 PF01515 Phosphate acetyl/butaryl transferase B224_4452 PF07085 DRTGG domain B224_4453 PF10369 Small subunit of acetolactate synthase B224_4455 PF00205 Thiamine pyrophosphate enzyme, central domain B224_4455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B224_4455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B224_4458 PF04101 Glycosyltransferase family 28 C-terminal domain B224_4458 PF03033 Glycosyltransferase family 28 N-terminal domain B224_4459 PF01569 PAP2 superfamily B224_4462 PF08502 LeuA allosteric (dimerisation) domain B224_4462 PF00682 HMGL-like B224_4464 PF00180 Isocitrate/isopropylmalate dehydrogenase B224_4466 PF00330 Aconitase family (aconitate hydratase) B224_4467 PF00694 Aconitase C-terminal domain B224_4475 PF00528 Binding-protein-dependent transport system inner membrane component B224_4476 PF00005 ABC transporter B224_4477 PF02562 PhoH-like protein B224_4477 PF13638 PIN domain B224_4480 PF08343 Ribonucleotide reductase N-terminal B224_4480 PF02867 Ribonucleotide reductase, barrel domain B224_4480 PF00317 Ribonucleotide reductase, all-alpha domain B224_4482 PF00271 Helicase conserved C-terminal domain B224_4482 PF18337 RapA N-terminal Tudor like domain B224_4482 PF18339 RapA N-terminal Tudor like domain 1 B224_4482 PF12137 RNA polymerase recycling family C-terminal B224_4482 PF00176 SNF2 family N-terminal domain B224_4484 PF00849 RNA pseudouridylate synthase B224_4486 PF00563 EAL domain B224_4486 PF00990 Diguanylate cyclase, GGDEF domain B224_4486 PF03707 Bacterial signalling protein N terminal repeat B224_4488 PF00118 TCP-1/cpn60 chaperonin family B224_4490 PF00166 Chaperonin 10 Kd subunit B224_4495 PF04186 FxsA cytoplasmic membrane protein B224_4496 PF10415 Fumarase C C-terminus B224_4496 PF00206 Lyase B224_4498 PF03605 Anaerobic c4-dicarboxylate membrane transporter B224_4499 PF04262 Glutamate-cysteine ligase B224_4502 PF05193 Peptidase M16 inactive domain B224_4502 PF00675 Insulinase (Peptidase family M16) B224_4503 PF09335 SNARE associated Golgi protein B224_4504 PF08240 Alcohol dehydrogenase GroES-like domain B224_4504 PF00107 Zinc-binding dehydrogenase B224_4510 PF00970 Oxidoreductase FAD-binding domain B224_4510 PF00175 Oxidoreductase NAD-binding domain B224_4511 PF01281 Ribosomal protein L9, N-terminal domain B224_4511 PF03948 Ribosomal protein L9, C-terminal domain B224_4513 PF01084 Ribosomal protein S18 B224_4514 PF01250 Ribosomal protein S6 B224_4515 PF01566 Natural resistance-associated macrophage protein B224_4519 PF13673 Acetyltransferase (GNAT) domain B224_4521 PF00588 SpoU rRNA Methylase family B224_4521 PF08032 RNA 2'-O ribose methyltransferase substrate binding B224_4523 PF00575 S1 RNA binding domain B224_4523 PF00773 RNB domain B224_4523 PF17876 Cold shock domain B224_4523 PF08461 Ribonuclease R winged-helix domain B224_4523 PF08206 Ribonuclease B OB domain B224_4525 PF00990 Diguanylate cyclase, GGDEF domain B224_4527 PF02664 S-Ribosylhomocysteinase (LuxS) B224_4529 PF00543 Nitrogen regulatory protein P-II B224_4531 PF00795 Carbon-nitrogen hydrolase B224_4531 PF02540 NAD synthase B224_4532 PF01609 Transposase DDE domain B224_4532 PF13808 DDE_Tnp_1-associated B224_4536 PF01695 IstB-like ATP binding protein B224_4537 PF00665 Integrase core domain B224_4540 PF01609 Transposase DDE domain B224_4546 PF13808 DDE_Tnp_1-associated B224_4546 PF01609 Transposase DDE domain B224_4548 PF02401 LytB protein B224_4549 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase B224_4550 PF01252 Signal peptidase (SPase) II B224_4553 PF00133 tRNA synthetases class I (I, L, M and V) B224_4553 PF06827 Zinc finger found in FPG and IleRS B224_4553 PF08264 Anticodon-binding domain of tRNA B224_4554 PF01687 Riboflavin kinase B224_4554 PF06574 FAD synthetase B224_4556 PF03023 Lipid II flippase MurJ B224_4559 PF01649 Ribosomal protein S20 B224_4560 PF01022 Bacterial regulatory protein, arsR family B224_4562 PF03466 LysR substrate binding domain B224_4562 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4564 PF06965 Na+/H+ antiporter 1 B224_4565 PF00303 Thymidylate synthase B224_4566 PF01790 Prolipoprotein diacylglyceryl transferase B224_4567 PF02896 PEP-utilising enzyme, TIM barrel domain B224_4567 PF00391 PEP-utilising enzyme, mobile domain B224_4567 PF01590 GAF domain B224_4567 PF05524 PEP-utilising enzyme, N-terminal B224_4569 PF00293 NUDIX domain B224_4570 PF02976 DNA mismatch repair enzyme MutH B224_4572 PF01245 Ribosomal protein L19 B224_4573 PF01746 tRNA (Guanine-1)-methyltransferase B224_4574 PF05239 PRC-barrel domain B224_4574 PF01782 RimM N-terminal domain B224_4575 PF00886 Ribosomal protein S16 B224_4577 PF02978 Signal peptide binding domain B224_4577 PF00448 SRP54-type protein, GTPase domain B224_4577 PF02881 SRP54-type protein, helical bundle domain B224_4578 PF01578 Cytochrome C assembly protein B224_4580 PF01595 Cyclin M transmembrane N-terminal domain B224_4580 PF03471 Transporter associated domain B224_4580 PF00571 CBS domain B224_4581 PF02082 Transcriptional regulator B224_4582 PF00175 Oxidoreductase NAD-binding domain B224_4582 PF00042 Globin B224_4582 PF00970 Oxidoreductase FAD-binding domain B224_4584 PF08238 Sel1 repeat B224_4585 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain B224_4585 PF00056 lactate/malate dehydrogenase, NAD binding domain B224_4586 PF00528 Binding-protein-dependent transport system inner membrane component B224_4587 PF00528 Binding-protein-dependent transport system inner membrane component B224_4589 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_4591 PF00005 ABC transporter B224_4592 PF02863 Arginine repressor, C-terminal domain B224_4592 PF01316 Arginine repressor, DNA binding domain B224_4593 PF04261 Dyp-type peroxidase family B224_4595 PF00005 ABC transporter B224_4595 PF08402 TOBE domain B224_4599 PF00543 Nitrogen regulatory protein P-II B224_4600 PF00472 RF-1 domain B224_4601 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain B224_4601 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain B224_4603 PF07670 Nucleoside recognition B224_4603 PF07662 Na+ dependent nucleoside transporter C-terminus B224_4603 PF01773 Na+ dependent nucleoside transporter N-terminus B224_4605 PF03466 LysR substrate binding domain B224_4605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4607 PF00255 Glutathione peroxidase B224_4611 PF02595 Glycerate kinase family B224_4612 PF02447 GntP family permease B224_4615 PF13556 PucR C-terminal helix-turn-helix domain B224_4615 PF17853 GGDEF-like domain B224_4615 PF05651 Putative sugar diacid recognition B224_4616 PF06062 Uncharacterised protein family (UPF0231) B224_4620 PF02594 Uncharacterised ACR, YggU family COG1872 B224_4621 PF02325 YGGT family B224_4622 PF03807 NADP oxidoreductase coenzyme F420-dependent B224_4622 PF14748 Pyrroline-5-carboxylate reductase dimerisation B224_4623 PF01168 Alanine racemase, N-terminal domain B224_4624 PF00437 Type II/IV secretion system protein B224_4626 PF00437 Type II/IV secretion system protein B224_4628 PF03883 Peroxide stress protein YaaA B224_4629 PF00270 DEAD/DEAH box helicase B224_4629 PF00271 Helicase conserved C-terminal domain B224_4631 PF05175 Methyltransferase small domain B224_4633 PF05525 Branched-chain amino acid transport protein B224_4637 PF01475 Ferric uptake regulator family B224_4639 PF01207 Dihydrouridine synthase (Dus) B224_4643 PF00216 Bacterial DNA-binding protein B224_4645 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ B224_4646 PF07238 PilZ domain B224_4647 PF18073 Rubredoxin metal binding domain B224_4652 PF18429 Domain of unknown function (DUF5609) B224_4654 PF11737 Protein of unknown function (DUF3300) B224_4657 PF01048 Phosphorylase superfamily B224_4658 PF01676 Metalloenzyme superfamily B224_4659 PF00591 Glycosyl transferase family, a/b domain B224_4659 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain B224_4659 PF02885 Glycosyl transferase family, helical bundle domain B224_4661 PF01791 DeoC/LacD family aldolase B224_4665 PF07670 Nucleoside recognition B224_4665 PF07662 Na+ dependent nucleoside transporter C-terminus B224_4665 PF01773 Na+ dependent nucleoside transporter N-terminus B224_4666 PF01026 TatD related DNase B224_4672 PF05958 tRNA (Uracil-5-)-methyltransferase B224_4672 PF01938 TRAM domain B224_4674 PF00909 Ammonium Transporter Family B224_4677 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_4677 PF00529 HlyD membrane-fusion protein of T1SS B224_4679 PF00664 ABC transporter transmembrane region B224_4679 PF00005 ABC transporter B224_4680 PF13439 Glycosyltransferase Family 4 B224_4686 PF07728 AAA domain (dynein-related subfamily) B224_4686 PF12102 Domain of unknown function (DUF3578) B224_4690 PF01609 Transposase DDE domain B224_4693 PF13362 Toprim domain B224_4693 PF08401 Domain of unknown function (DUF1738) B224_4693 PF18818 Metallopeptidase superfamily domain B224_4700 PF03739 Lipopolysaccharide export system permease LptF/LptG B224_4703 PF03739 Lipopolysaccharide export system permease LptF/LptG B224_4704 PF00883 Cytosol aminopeptidase family, catalytic domain B224_4704 PF02789 Cytosol aminopeptidase family, N-terminal domain B224_4706 PF04364 DNA polymerase III chi subunit, HolC B224_4708 PF08264 Anticodon-binding domain of tRNA B224_4708 PF10458 Valyl tRNA synthetase tRNA binding arm B224_4708 PF00133 tRNA synthetases class I (I, L, M and V) B224_4709 PF01595 Cyclin M transmembrane N-terminal domain B224_4709 PF03471 Transporter associated domain B224_4709 PF00571 CBS domain B224_4711 PF09335 SNARE associated Golgi protein B224_4712 PF00768 D-alanyl-D-alanine carboxypeptidase B224_4713 PF02599 Global regulator protein family B224_4714 PF13840 ACT domain B224_4714 PF00696 Amino acid kinase family B224_4714 PF01842 ACT domain B224_4716 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain B224_4716 PF01411 tRNA synthetases class II (A) B224_4716 PF02272 DHHA1 domain B224_4717 PF01609 Transposase DDE domain B224_4717 PF13006 Insertion element 4 transposase N-terminal B224_4719 PF02631 RecX family B224_4721 PF00154 recA bacterial DNA recombination protein B224_4722 PF02464 Competence-damaged protein B224_4725 PF01624 MutS domain I B224_4725 PF05188 MutS domain II B224_4725 PF05192 MutS domain III B224_4725 PF05190 MutS family domain IV B224_4725 PF00488 MutS domain V B224_4727 PF02028 BCCT, betaine/carnitine/choline family transporter B224_4730 PF04222 Protein of unknown function (DUF416) B224_4731 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B224_4734 PF01551 Peptidase family M23 B224_4734 PF08525 Opacity-associated protein A N-terminal motif B224_4734 PF01476 LysM domain B224_4741 PF01297 Zinc-uptake complex component A periplasmic B224_4742 PF00005 ABC transporter B224_4743 PF00950 ABC 3 transport family B224_4744 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4744 PF03466 LysR substrate binding domain B224_4746 PF03167 Uracil DNA glycosylase superfamily B224_4747 PF00892 EamA-like transporter family B224_4748 PF01541 GIY-YIG catalytic domain B224_4751 PF04012 PspA/IM30 family B224_4752 PF01553 Acyltransferase B224_4758 PF00578 AhpC/TSA family B224_4760 PF00684 DnaJ central domain B224_4760 PF01556 DnaJ C terminal domain B224_4760 PF00226 DnaJ domain B224_4765 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family B224_4767 PF13006 Insertion element 4 transposase N-terminal B224_4767 PF01609 Transposase DDE domain B224_4774 PF05598 Transposase domain (DUF772) B224_4774 PF01609 Transposase DDE domain B224_4777 PF00521 DNA gyrase/topoisomerase IV, subunit A B224_4777 PF03989 DNA gyrase C-terminal domain, beta-propeller B224_4779 PF00986 DNA gyrase B subunit, carboxyl terminus B224_4779 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_4779 PF00204 DNA gyrase B B224_4779 PF01751 Toprim domain B224_4781 PF00293 NUDIX domain B224_4782 PF05728 Uncharacterised protein family (UPF0227) B224_4783 PF00149 Calcineurin-like phosphoesterase B224_4784 PF06853 Protein of unknown function (DUF1249) B224_4785 PF00293 NUDIX domain B224_4786 PF02321 Outer membrane efflux protein B224_4788 PF01467 Cytidylyltransferase-like B224_4788 PF00294 pfkB family carbohydrate kinase B224_4790 PF03279 Bacterial lipid A biosynthesis acyltransferase B224_4793 PF01527 Transposase B224_4795 PF13006 Insertion element 4 transposase N-terminal B224_4795 PF01609 Transposase DDE domain B224_4797 PF00149 Calcineurin-like phosphoesterase B224_4797 PF02872 5'-nucleotidase, C-terminal domain B224_4798 PF01810 LysE type translocator B224_4799 PF00196 Bacterial regulatory proteins, luxR family B224_4799 PF03472 Autoinducer binding domain B224_4801 PF00765 Autoinducer synthase B224_4803 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4803 PF03466 LysR substrate binding domain B224_4804 PF17876 Cold shock domain B224_4804 PF00773 RNB domain B224_4804 PF08206 Ribonuclease B OB domain B224_4806 PF13006 Insertion element 4 transposase N-terminal B224_4806 PF01609 Transposase DDE domain B224_4807 PF00665 Integrase core domain B224_4808 PF01695 IstB-like ATP binding protein B224_4811 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 B224_4811 PF02378 Phosphotransferase system, EIIC B224_4811 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit B224_4813 PF01232 Mannitol dehydrogenase Rossmann domain B224_4813 PF08125 Mannitol dehydrogenase C-terminal domain B224_4815 PF05068 Mannitol repressor B224_4821 PF01544 CorA-like Mg2+ transporter protein B224_4823 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 B224_4827 PF07670 Nucleoside recognition B224_4827 PF07662 Na+ dependent nucleoside transporter C-terminus B224_4827 PF01773 Na+ dependent nucleoside transporter N-terminus B224_4831 PF13808 DDE_Tnp_1-associated B224_4831 PF01609 Transposase DDE domain B224_4832 PF00270 DEAD/DEAH box helicase B224_4832 PF00271 Helicase conserved C-terminal domain B224_4832 PF03880 DbpA RNA binding domain B224_4839 PF01609 Transposase DDE domain B224_4839 PF13006 Insertion element 4 transposase N-terminal B224_4840 PF01040 UbiA prenyltransferase family B224_4841 PF00425 chorismate binding enzyme B224_4842 PF16582 Middle domain of thiamine pyrophosphate B224_4842 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B224_4842 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B224_4844 PF12697 Alpha/beta hydrolase family B224_4846 PF00378 Enoyl-CoA hydratase/isomerase B224_4847 PF13378 Enolase C-terminal domain-like B224_4849 PF00501 AMP-binding enzyme B224_4851 PF01752 Collagenase B224_4851 PF08453 Peptidase family M9 N-terminal B224_4852 PF02698 DUF218 domain B224_4855 PF02777 Iron/manganese superoxide dismutases, C-terminal domain B224_4855 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain B224_4857 PF00561 alpha/beta hydrolase fold B224_4861 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_4861 PF12793 Sugar transport-related sRNA regulator N-term B224_4864 PF01053 Cys/Met metabolism PLP-dependent enzyme B224_4867 PF01609 Transposase DDE domain B224_4867 PF13006 Insertion element 4 transposase N-terminal B224_4868 PF00465 Iron-containing alcohol dehydrogenase B224_4871 PF00106 short chain dehydrogenase B224_4878 PF00128 Alpha amylase, catalytic domain B224_4878 PF02903 Alpha amylase, N-terminal ig-like domain B224_4878 PF16657 Maltogenic Amylase, C-terminal domain B224_4880 PF00884 Sulfatase B224_4881 PF02219 Methylenetetrahydrofolate reductase B224_4886 PF12729 Four helix bundle sensory module for signal transduction B224_4886 PF00672 HAMP domain B224_4886 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_4887 PF03922 OmpW family B224_4888 PF13737 Transposase DDE domain B224_4893 PF17755 UvrA DNA-binding domain B224_4893 PF17760 UvrA interaction domain B224_4893 PF00005 ABC transporter B224_4894 PF00196 Bacterial regulatory proteins, luxR family B224_4895 PF00436 Single-strand binding protein family B224_4900 PF00512 His Kinase A (phospho-acceptor) domain B224_4900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_4900 PF00672 HAMP domain B224_4902 PF00486 Transcriptional regulatory protein, C terminal B224_4902 PF00072 Response regulator receiver domain B224_4909 PF00990 Diguanylate cyclase, GGDEF domain B224_4909 PF08448 PAS fold B224_4910 PF00543 Nitrogen regulatory protein P-II B224_4911 PF00909 Ammonium Transporter Family B224_4914 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily B224_4917 PF01609 Transposase DDE domain B224_4917 PF13808 DDE_Tnp_1-associated B224_4919 PF01609 Transposase DDE domain B224_4919 PF05598 Transposase domain (DUF772) B224_4920 PF13538 UvrD-like helicase C-terminal domain B224_4923 PF12705 PD-(D/E)XK nuclease superfamily B224_4923 PF13361 UvrD-like helicase C-terminal domain B224_4923 PF00580 UvrD/REP helicase N-terminal domain B224_4926 PF17946 RecC C-terminal domain B224_4927 PF07681 DoxX B224_4929 PF17954 Quercetinase C-terminal cupin domain B224_4929 PF02678 Pirin B224_4931 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_4931 PF03466 LysR substrate binding domain B224_4934 PF07702 UTRA domain B224_4934 PF00392 Bacterial regulatory proteins, gntR family B224_4938 PF00528 Binding-protein-dependent transport system inner membrane component B224_4941 PF08402 TOBE domain B224_4941 PF00005 ABC transporter B224_4945 PF00990 Diguanylate cyclase, GGDEF domain B224_4948 PF06719 AraC-type transcriptional regulator N-terminus B224_4948 PF12833 Helix-turn-helix domain B224_4949 PF00583 Acetyltransferase (GNAT) family B224_4951 PF06628 Catalase-related immune-responsive B224_4951 PF00199 Catalase B224_4959 PF01569 PAP2 superfamily B224_4960 PF01594 AI-2E family transporter B224_4962 PF00106 short chain dehydrogenase B224_4964 PF02954 Bacterial regulatory protein, Fis family B224_4964 PF00989 PAS fold B224_4964 PF00158 Sigma-54 interaction domain B224_4966 PF00465 Iron-containing alcohol dehydrogenase B224_4968 PF00381 PTS HPr component phosphorylation site B224_4968 PF05524 PEP-utilising enzyme, N-terminal B224_4968 PF03610 PTS system fructose IIA component B224_4968 PF00391 PEP-utilising enzyme, mobile domain B224_4969 PF02734 DAK2 domain B224_4970 PF02733 Dak1 domain B224_4972 PF00860 Permease family B224_4974 PF00665 Integrase core domain B224_4975 PF01695 IstB-like ATP binding protein B224_4981 PF00009 Elongation factor Tu GTP binding domain B224_4981 PF03144 Elongation factor Tu domain 2 B224_4981 PF03143 Elongation factor Tu C-terminal domain B224_4984 PF14492 Elongation Factor G, domain II B224_4984 PF03144 Elongation factor Tu domain 2 B224_4984 PF00009 Elongation factor Tu GTP binding domain B224_4984 PF03764 Elongation factor G, domain IV B224_4984 PF00679 Elongation factor G C-terminus B224_4985 PF00177 Ribosomal protein S7p/S5e B224_4986 PF04077 DsrH like protein B224_4987 PF02635 DsrE/DsrF-like family B224_4988 PF02635 DsrE/DsrF-like family B224_4990 PF01042 Endoribonuclease L-PSP B224_4991 PF08348 YheO-like PAS domain B224_4991 PF13309 HTH domain B224_4994 PF04997 RNA polymerase Rpb1, domain 1 B224_4994 PF04983 RNA polymerase Rpb1, domain 3 B224_4994 PF04998 RNA polymerase Rpb1, domain 5 B224_4994 PF00623 RNA polymerase Rpb1, domain 2 B224_4994 PF05000 RNA polymerase Rpb1, domain 4 B224_4997 PF04563 RNA polymerase beta subunit B224_4997 PF04561 RNA polymerase Rpb2, domain 2 B224_4997 PF04565 RNA polymerase Rpb2, domain 3 B224_4997 PF10385 RNA polymerase beta subunit external 1 domain B224_4997 PF00562 RNA polymerase Rpb2, domain 6 B224_4997 PF04560 RNA polymerase Rpb2, domain 7 B224_4998 PF00542 Ribosomal protein L7/L12 C-terminal domain B224_4998 PF16320 Ribosomal protein L7/L12 dimerisation domain B224_4999 PF00466 Ribosomal protein L10 B224_5000 PF00687 Ribosomal protein L1p/L10e family B224_5002 PF00298 Ribosomal protein L11, RNA binding domain B224_5002 PF03946 Ribosomal protein L11, N-terminal domain B224_5003 PF02357 Transcription termination factor nusG B224_5003 PF00467 KOW motif B224_5005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex B224_5006 PF03144 Elongation factor Tu domain 2 B224_5006 PF00009 Elongation factor Tu GTP binding domain B224_5006 PF03143 Elongation factor Tu C-terminal domain B224_5008 PF00485 Phosphoribulokinase / Uridine kinase family B224_5009 PF03099 Biotin/lipoate A/B protein ligase family B224_5009 PF02237 Biotin protein ligase C terminal domain B224_5009 PF08279 HTH domain B224_5010 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain B224_5010 PF01565 FAD binding domain B224_5013 PF02080 TrkA-C domain B224_5013 PF02254 TrkA-N domain B224_5014 PF02386 Cation transport protein B224_5017 PF01131 DNA topoisomerase B224_5017 PF01751 Toprim domain B224_5018 PF03264 NapC/NirT cytochrome c family, N-terminal region B224_5020 PF01568 Molydopterin dinucleotide binding domain B224_5020 PF18364 Molybdopterin oxidoreductase N-terminal domain B224_5020 PF00384 Molybdopterin oxidoreductase B224_5023 PF08918 PhoQ Sensor B224_5023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5025 PF00486 Transcriptional regulatory protein, C terminal B224_5025 PF00072 Response regulator receiver domain B224_5029 PF01794 Ferric reductase like transmembrane component B224_5031 PF00174 Oxidoreductase molybdopterin binding domain B224_5032 PF06496 Protein of unknown function (DUF1097) B224_5033 PF00158 Sigma-54 interaction domain B224_5033 PF00072 Response regulator receiver domain B224_5037 PF00512 His Kinase A (phospho-acceptor) domain B224_5037 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5040 PF00478 IMP dehydrogenase / GMP reductase domain B224_5040 PF00571 CBS domain B224_5042 PF10063 Uncharacterized integral membrane protein (DUF2301) B224_5046 PF01037 Lrp/AsnC ligand binding domain B224_5047 PF03590 Aspartate-ammonia ligase B224_5049 PF00004 ATPase family associated with various cellular activities (AAA) B224_5049 PF10431 C-terminal, D2-small domain, of ClpB protein B224_5049 PF02861 Clp amino terminal domain, pathogenicity island component B224_5049 PF07724 AAA domain (Cdc48 subfamily) B224_5049 PF17871 AAA lid domain B224_5051 PF01479 S4 domain B224_5051 PF00849 RNA pseudouridylate synthase B224_5052 PF13525 Outer membrane lipoprotein B224_5053 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B224_5053 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_5054 PF00375 Sodium:dicarboxylate symporter family B224_5055 PF03313 Serine dehydratase alpha chain B224_5058 PF02233 NAD(P) transhydrogenase beta subunit B224_5059 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch B224_5059 PF01262 Alanine dehydrogenase/PNT, C-terminal domain B224_5059 PF05222 Alanine dehydrogenase/PNT, N-terminal domain B224_5062 PF00465 Iron-containing alcohol dehydrogenase B224_5063 PF06719 AraC-type transcriptional regulator N-terminus B224_5063 PF12833 Helix-turn-helix domain B224_5065 PF08212 Lipocalin-like domain B224_5067 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_5067 PF00672 HAMP domain B224_5067 PF02743 Cache domain B224_5071 PF02666 Phosphatidylserine decarboxylase B224_5073 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B224_5073 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B224_5074 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain B224_5074 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain B224_5075 PF01316 Arginine repressor, DNA binding domain B224_5075 PF02863 Arginine repressor, C-terminal domain B224_5076 PF03606 C4-dicarboxylate anaerobic carrier B224_5077 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain B224_5077 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain B224_5079 PF00696 Amino acid kinase family B224_5084 PF01609 Transposase DDE domain B224_5087 PF02743 Cache domain B224_5087 PF00672 HAMP domain B224_5087 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_5088 PF01609 Transposase DDE domain B224_5088 PF13006 Insertion element 4 transposase N-terminal B224_5089 PF02653 Branched-chain amino acid transport system / permease component B224_5091 PF00005 ABC transporter B224_5092 PF13407 Periplasmic binding protein domain B224_5095 PF02929 Beta galactosidase small chain B224_5095 PF16353 Domain of unknown function(DUF4981) B224_5095 PF00703 Glycosyl hydrolases family 2 B224_5095 PF02837 Glycosyl hydrolases family 2, sugar binding domain B224_5095 PF02836 Glycosyl hydrolases family 2, TIM barrel domain B224_5096 PF00356 Bacterial regulatory proteins, lacI family B224_5097 PF16363 GDP-mannose 4,6 dehydratase B224_5098 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain B224_5098 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain B224_5099 PF00288 GHMP kinases N terminal domain B224_5099 PF08544 GHMP kinases C terminal B224_5099 PF10509 Galactokinase galactose-binding signature B224_5101 PF01263 Aldose 1-epimerase B224_5102 PF00248 Aldo/keto reductase family B224_5103 PF02673 Bacitracin resistance protein BacA B224_5104 PF12973 ChrR Cupin-like domain B224_5105 PF04542 Sigma-70 region 2 B224_5105 PF04545 Sigma-70, region 4 B224_5107 PF03485 Arginyl tRNA synthetase N terminal domain B224_5107 PF05746 DALR anticodon binding domain B224_5107 PF00750 tRNA synthetases class I (R) B224_5110 PF00227 Proteasome subunit B224_5111 PF10431 C-terminal, D2-small domain, of ClpB protein B224_5111 PF07724 AAA domain (Cdc48 subfamily) B224_5111 PF00004 ATPase family associated with various cellular activities (AAA) B224_5112 PF07690 Major Facilitator Superfamily B224_5114 PF03466 LysR substrate binding domain B224_5114 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5116 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_5117 PF00005 ABC transporter B224_5123 PF18267 Rubredoxin NAD+ reductase C-terminal domain B224_5123 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_5123 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain B224_5123 PF01077 Nitrite and sulphite reductase 4Fe-4S domain B224_5123 PF04324 BFD-like [2Fe-2S] binding domain B224_5125 PF13806 Rieske-like [2Fe-2S] domain B224_5126 PF01226 Formate/nitrite transporter B224_5127 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases B224_5127 PF14824 Sirohaem biosynthesis protein central B224_5127 PF10414 Sirohaem synthase dimerisation region B224_5128 PF00571 CBS domain B224_5128 PF03448 MgtE intracellular N domain B224_5128 PF01769 Divalent cation transporter B224_5130 PF03737 Aldolase/RraA B224_5131 PF02592 Putative vitamin uptake transporter B224_5133 PF02696 Uncharacterized ACR, YdiU/UPF0061 family B224_5135 PF00034 Cytochrome c B224_5138 PF00570 HRDC domain B224_5138 PF16124 RecQ zinc-binding B224_5138 PF00270 DEAD/DEAH box helicase B224_5138 PF00271 Helicase conserved C-terminal domain B224_5138 PF09382 RQC domain B224_5141 PF03061 Thioesterase superfamily B224_5148 PF03473 MOSC domain B224_5148 PF03475 3-alpha domain B224_5150 PF00528 Binding-protein-dependent transport system inner membrane component B224_5152 PF00528 Binding-protein-dependent transport system inner membrane component B224_5155 PF08402 TOBE domain B224_5155 PF00005 ABC transporter B224_5156 PF13416 Bacterial extracellular solute-binding protein B224_5158 PF13416 Bacterial extracellular solute-binding protein B224_5160 PF00202 Aminotransferase class-III B224_5162 PF00120 Glutamine synthetase, catalytic domain B224_5163 PF01258 Prokaryotic dksA/traR C4-type zinc finger B224_5169 PF05981 CreA protein B224_5170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain B224_5170 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain B224_5172 PF00012 Hsp70 protein B224_5175 PF00128 Alpha amylase, catalytic domain B224_5175 PF02903 Alpha amylase, N-terminal ig-like domain B224_5182 PF05958 tRNA (Uracil-5-)-methyltransferase B224_5183 PF00486 Transcriptional regulatory protein, C terminal B224_5183 PF00072 Response regulator receiver domain B224_5185 PF00672 HAMP domain B224_5185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5185 PF00512 His Kinase A (phospho-acceptor) domain B224_5188 PF00390 Malic enzyme, N-terminal domain B224_5188 PF03949 Malic enzyme, NAD binding domain B224_5189 PF11066 Protein of unknown function (DUF2867) B224_5189 PF13460 NAD(P)H-binding B224_5190 PF01197 Ribosomal protein L31 B224_5192 PF17764 3′ DNA-binding domain (3′BD) B224_5192 PF00271 Helicase conserved C-terminal domain B224_5192 PF18319 PriA DNA helicase Cys-rich region (CRR) domain B224_5192 PF18074 Primosomal protein N C-terminal domain B224_5192 PF00270 DEAD/DEAH box helicase B224_5195 PF01389 OmpA-like transmembrane domain B224_5195 PF00691 OmpA family B224_5196 PF05598 Transposase domain (DUF772) B224_5196 PF01609 Transposase DDE domain B224_5200 PF01609 Transposase DDE domain B224_5200 PF13808 DDE_Tnp_1-associated B224_5202 PF00585 C-terminal regulatory domain of Threonine dehydratase B224_5202 PF00291 Pyridoxal-phosphate dependent enzyme B224_5204 PF00920 Dehydratase family B224_5206 PF01063 Amino-transferase class IV B224_5209 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain B224_5209 PF00205 Thiamine pyrophosphate enzyme, central domain B224_5209 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain B224_5210 PF13335 Magnesium chelatase, subunit ChlI C-terminal B224_5210 PF01078 Magnesium chelatase, subunit ChlI B224_5211 PF01553 Acyltransferase B224_5212 PF01553 Acyltransferase B224_5217 PF00857 Isochorismatase family B224_5218 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family B224_5218 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain B224_5220 PF00005 ABC transporter B224_5221 PF00528 Binding-protein-dependent transport system inner membrane component B224_5223 PF01323 DSBA-like thioredoxin domain B224_5224 PF01636 Phosphotransferase enzyme family B224_5227 PF12801 4Fe-4S binding domain B224_5227 PF13746 4Fe-4S dicluster domain B224_5227 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase B224_5229 PF06288 Protein of unknown function (DUF1040) B224_5230 PF00990 Diguanylate cyclase, GGDEF domain B224_5230 PF00360 Phytochrome region B224_5230 PF01590 GAF domain B224_5230 PF00563 EAL domain B224_5231 PF09278 MerR, DNA binding B224_5231 PF00376 MerR family regulatory protein B224_5232 PF00403 Heavy-metal-associated domain B224_5234 PF00156 Phosphoribosyl transferase domain B224_5235 PF01138 3' exoribonuclease family, domain 1 B224_5235 PF03725 3' exoribonuclease family, domain 2 B224_5236 PF08340 Domain of unknown function (DUF1732) B224_5236 PF03755 YicC-like family, N-terminal region B224_5239 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) B224_5241 PF01075 Glycosyltransferase family 9 (heptosyltransferase) B224_5242 PF00535 Glycosyl transferase family 2 B224_5244 PF01075 Glycosyltransferase family 9 (heptosyltransferase) B224_5246 PF01467 Cytidylyltransferase-like B224_5247 PF04393 Protein of unknown function (DUF535) B224_5249 PF06827 Zinc finger found in FPG and IleRS B224_5249 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain B224_5249 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain B224_5251 PF00471 Ribosomal protein L33 B224_5252 PF04002 RadC-like JAB domain B224_5254 PF04127 DNA / pantothenate metabolism flavoprotein B224_5254 PF02441 Flavoprotein B224_5255 PF00692 dUTPase B224_5257 PF00440 Bacterial regulatory proteins, tetR family B224_5258 PF00924 Mechanosensitive ion channel B224_5258 PF05552 Conserved TM helix B224_5260 PF00342 Phosphoglucose isomerase B224_5262 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain B224_5262 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain B224_5264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5264 PF03466 LysR substrate binding domain B224_5266 PF00583 Acetyltransferase (GNAT) family B224_5266 PF13607 Succinyl-CoA ligase like flavodoxin domain B224_5266 PF13380 CoA binding domain B224_5269 PF01177 Asp/Glu/Hydantoin racemase B224_5271 PF07715 TonB-dependent Receptor Plug Domain B224_5271 PF00593 TonB dependent receptor B224_5272 PF00731 AIR carboxylase B224_5273 PF02222 ATP-grasp domain B224_5273 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain B224_5276 PF07690 Major Facilitator Superfamily B224_5277 PF00072 Response regulator receiver domain B224_5277 PF04397 LytTr DNA-binding domain B224_5279 PF07694 5TMR of 5TMR-LYT B224_5279 PF06580 Histidine kinase B224_5279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5282 PF01810 LysE type translocator B224_5283 PF07690 Major Facilitator Superfamily B224_5286 PF00210 Ferritin-like domain B224_5287 PF00990 Diguanylate cyclase, GGDEF domain B224_5287 PF05230 MASE2 domain B224_5288 PF07055 Enoyl reductase FAD binding domain B224_5288 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase B224_5288 PF12241 Trans-2-enoyl-CoA reductase catalytic region B224_5289 PF00582 Universal stress protein family B224_5290 PF00579 tRNA synthetases class I (W and Y) B224_5291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5291 PF03466 LysR substrate binding domain B224_5295 PF00892 EamA-like transporter family B224_5298 PF01075 Glycosyltransferase family 9 (heptosyltransferase) B224_5300 PF00625 Guanylate kinase B224_5301 PF01192 RNA polymerase Rpb6 B224_5302 PF13291 ACT domain B224_5302 PF02824 TGS domain B224_5302 PF04607 Region found in RelA / SpoT proteins B224_5305 PF12105 SpoU, rRNA methylase, C-terminal B224_5305 PF00588 SpoU rRNA Methylase family B224_5306 PF12146 Serine aminopeptidase, S33 B224_5309 PF00440 Bacterial regulatory proteins, tetR family B224_5310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion B224_5312 PF00873 AcrB/AcrD/AcrF family B224_5315 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_5315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5315 PF00512 His Kinase A (phospho-acceptor) domain B224_5316 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain B224_5316 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_5319 PF00107 Zinc-binding dehydrogenase B224_5319 PF08240 Alcohol dehydrogenase GroES-like domain B224_5321 PF01638 HxlR-like helix-turn-helix B224_5323 PF03814 Potassium-transporting ATPase A subunit B224_5328 PF02669 K+-transporting ATPase, c chain B224_5329 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5329 PF13492 GAF domain B224_5329 PF02702 Osmosensitive K+ channel His kinase sensor domain B224_5329 PF00512 His Kinase A (phospho-acceptor) domain B224_5329 PF13493 Domain of unknown function (DUF4118) B224_5331 PF00486 Transcriptional regulatory protein, C terminal B224_5331 PF00072 Response regulator receiver domain B224_5333 PF07690 Major Facilitator Superfamily B224_5336 PF00155 Aminotransferase class I and II B224_5338 PF00011 Hsp20/alpha crystallin family B224_5340 PF00011 Hsp20/alpha crystallin family B224_5342 PF12706 Beta-lactamase superfamily domain B224_5343 PF01965 DJ-1/PfpI family B224_5343 PF12833 Helix-turn-helix domain B224_5344 PF13280 WYL domain B224_5344 PF08279 HTH domain B224_5347 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5347 PF18053 DNA gyrase B subunit insert domain B224_5347 PF00986 DNA gyrase B subunit, carboxyl terminus B224_5347 PF00204 DNA gyrase B B224_5347 PF01751 Toprim domain B224_5348 PF02463 RecF/RecN/SMC N terminal domain B224_5349 PF00712 DNA polymerase III beta subunit, N-terminal domain B224_5349 PF02767 DNA polymerase III beta subunit, central domain B224_5349 PF02768 DNA polymerase III beta subunit, C-terminal domain B224_5351 PF08299 Bacterial dnaA protein helix-turn-helix B224_5351 PF00308 Bacterial dnaA protein B224_5351 PF11638 DnaA N-terminal domain B224_5352 PF00497 Bacterial extracellular solute-binding proteins, family 3 B224_5353 PF00528 Binding-protein-dependent transport system inner membrane component B224_5355 PF00468 Ribosomal protein L34 B224_5356 PF00825 Ribonuclease P B224_5357 PF02096 60Kd inner membrane protein B224_5357 PF14849 YidC periplasmic domain B224_5358 PF10396 GTP-binding protein TrmE N-terminus B224_5358 PF12631 MnmE helical domain B224_5358 PF01926 50S ribosome-binding GTPase B224_5359 PF01032 FecCD transport family B224_5360 PF01497 Periplasmic binding protein B224_5361 PF00005 ABC transporter B224_5363 PF00005 ABC transporter B224_5365 PF07715 TonB-dependent Receptor Plug Domain B224_5365 PF00593 TonB dependent receptor B224_5367 PF00258 Flavodoxin B224_5370 PF01134 Glucose inhibited division protein A B224_5370 PF13932 GidA associated domain B224_5371 PF02527 rRNA small subunit methyltransferase G B224_5373 PF13614 AAA domain B224_5374 PF02195 ParB-like nuclease domain B224_5374 PF17762 HTH domain found in ParB protein B224_5375 PF00119 ATP synthase A chain B224_5376 PF00137 ATP synthase subunit C B224_5377 PF00430 ATP synthase B/B' CF(0) B224_5379 PF00213 ATP synthase delta (OSCP) subunit B224_5380 PF02874 ATP synthase alpha/beta family, beta-barrel domain B224_5380 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B224_5380 PF00306 ATP synthase alpha/beta chain, C terminal domain B224_5382 PF00231 ATP synthase B224_5384 PF02874 ATP synthase alpha/beta family, beta-barrel domain B224_5384 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B224_5385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain B224_5385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain B224_5387 PF12804 MobA-like NTP transferase domain B224_5387 PF14602 Hexapeptide repeat of succinyl-transferase B224_5387 PF00132 Bacterial transferase hexapeptide (six repeats) B224_5388 PF06123 Inner membrane protein CreD B224_5390 PF00905 Penicillin binding protein transpeptidase domain B224_5392 PF00672 HAMP domain B224_5392 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5392 PF00512 His Kinase A (phospho-acceptor) domain B224_5393 PF00486 Transcriptional regulatory protein, C terminal B224_5393 PF00072 Response regulator receiver domain B224_5395 PF08220 DeoR-like helix-turn-helix domain B224_5395 PF00455 DeoR C terminal sensor domain B224_5397 PF01380 SIS domain B224_5399 PF03472 Autoinducer binding domain B224_5399 PF00196 Bacterial regulatory proteins, luxR family B224_5401 PF01618 MotA/TolQ/ExbB proton channel family B224_5404 PF01618 MotA/TolQ/ExbB proton channel family B224_5405 PF02472 Biopolymer transport protein ExbD/TolR B224_5406 PF03544 Gram-negative bacterial TonB protein C-terminal B224_5410 PF00356 Bacterial regulatory proteins, lacI family B224_5413 PF00703 Glycosyl hydrolases family 2 B224_5413 PF02929 Beta galactosidase small chain B224_5413 PF02836 Glycosyl hydrolases family 2, TIM barrel domain B224_5413 PF02837 Glycosyl hydrolases family 2, sugar binding domain B224_5413 PF16353 Domain of unknown function(DUF4981) B224_5414 PF04074 YhcH/YjgK/YiaL B224_5415 PF13520 Amino acid permease B224_5417 PF01588 Putative tRNA binding domain B224_5418 PF13520 Amino acid permease B224_5419 PF13593 SBF-like CPA transporter family (DUF4137) B224_5422 PF03781 Sulfatase-modifying factor enzyme 1 B224_5422 PF12867 DinB superfamily B224_5426 PF00756 Putative esterase B224_5428 PF00107 Zinc-binding dehydrogenase B224_5428 PF08240 Alcohol dehydrogenase GroES-like domain B224_5429 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5429 PF03466 LysR substrate binding domain B224_5430 PF04389 Peptidase family M28 B224_5430 PF04151 Bacterial pre-peptidase C-terminal domain B224_5432 PF01609 Transposase DDE domain B224_5432 PF13006 Insertion element 4 transposase N-terminal B224_5443 PF13361 UvrD-like helicase C-terminal domain B224_5443 PF00580 UvrD/REP helicase N-terminal domain B224_5449 PF06206 CpeT/CpcT family (DUF1001) B224_5451 PF04143 Sulphur transport B224_5453 PF01810 LysE type translocator B224_5454 PF12833 Helix-turn-helix domain B224_5456 PF00892 EamA-like transporter family B224_5460 PF00171 Aldehyde dehydrogenase family B224_5463 PF07883 Cupin domain B224_5463 PF01381 Helix-turn-helix B224_5464 PF00202 Aminotransferase class-III B224_5467 PF00171 Aldehyde dehydrogenase family B224_5468 PF00117 Glutamine amidotransferase class-I B224_5468 PF00958 GMP synthase C terminal domain B224_5468 PF02540 NAD synthase B224_5469 PF03466 LysR substrate binding domain B224_5469 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5470 PF00294 pfkB family carbohydrate kinase B224_5472 PF02082 Transcriptional regulator B224_5475 PF02646 RmuC family B224_5477 PF02386 Cation transport protein B224_5478 PF02080 TrkA-C domain B224_5478 PF02254 TrkA-N domain B224_5479 PF01029 NusB family B224_5479 PF01189 16S rRNA methyltransferase RsmB/F B224_5480 PF00551 Formyl transferase B224_5480 PF02911 Formyl transferase, C-terminal domain B224_5482 PF01327 Polypeptide deformylase B224_5485 PF02481 DNA recombination-mediator protein A B224_5485 PF17782 DprA winged helix domain B224_5486 PF04361 Protein of unknown function (DUF494) B224_5487 PF01396 Topoisomerase DNA binding C4 zinc finger B224_5488 PF01300 Telomere recombination B224_5489 PF01218 Coproporphyrinogen III oxidase B224_5490 PF01488 Shikimate / quinate 5-dehydrogenase B224_5490 PF08501 Shikimate dehydrogenase substrate binding domain B224_5490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain B224_5491 PF01926 50S ribosome-binding GTPase B224_5492 PF00034 Cytochrome c B224_5493 PF04220 Der GTPase activator (YihI) B224_5495 PF10675 Protein of unknown function (DUF2489) B224_5496 PF06969 HemN C-terminal domain B224_5496 PF04055 Radical SAM superfamily B224_5499 PF01609 Transposase DDE domain B224_5499 PF13808 DDE_Tnp_1-associated B224_5501 PF00962 Adenosine/AMP deaminase B224_5503 PF00158 Sigma-54 interaction domain B224_5503 PF00072 Response regulator receiver domain B224_5503 PF02954 Bacterial regulatory protein, Fis family B224_5504 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5504 PF00512 His Kinase A (phospho-acceptor) domain B224_5504 PF00989 PAS fold B224_5508 PF03951 Glutamine synthetase, beta-Grasp domain B224_5508 PF00120 Glutamine synthetase, catalytic domain B224_5510 PF03631 Virulence factor BrkB B224_5512 PF03631 Virulence factor BrkB B224_5514 PF02580 D-Tyr-tRNA(Tyr) deacylase B224_5518 PF09500 Putative thioesterase (yiiD_Cterm) B224_5518 PF00583 Acetyltransferase (GNAT) family B224_5522 PF00270 DEAD/DEAH box helicase B224_5522 PF00271 Helicase conserved C-terminal domain B224_5522 PF17191 RecG wedge domain B224_5523 PF13091 PLD-like domain B224_5524 PF02447 GntP family permease B224_5525 PF01202 Shikimate kinase B224_5526 PF00920 Dehydratase family B224_5527 PF01081 KDPG and KHG aldolase B224_5529 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family B224_5529 PF00356 Bacterial regulatory proteins, lacI family B224_5533 PF01551 Peptidase family M23 B224_5534 PF00581 Rhodanese-like domain B224_5535 PF06415 BPG-independent PGAM N-terminus (iPGM_N) B224_5535 PF01676 Metalloenzyme superfamily B224_5536 PF02556 Preprotein translocase subunit SecB B224_5537 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus B224_5537 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus B224_5538 PF01521 Iron-sulphur cluster biosynthesis B224_5538 PF01106 NifU-like domain B224_5540 PF00156 Phosphoribosyl transferase domain B224_5541 PF00561 alpha/beta hydrolase fold B224_5545 PF16921 Tex protein YqgF-like domain B224_5545 PF09371 Tex-like protein N-terminal domain B224_5545 PF00575 S1 RNA binding domain B224_5545 PF17674 HHH domain B224_5547 PF01272 Transcription elongation factor, GreA/GreB, C-term B224_5547 PF03449 Transcription elongation factor, N-terminal B224_5548 PF00486 Transcriptional regulatory protein, C terminal B224_5548 PF00072 Response regulator receiver domain B224_5549 PF00672 HAMP domain B224_5549 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5549 PF00512 His Kinase A (phospho-acceptor) domain B224_5551 PF00338 Ribosomal protein S10p/S20e B224_5552 PF00297 Ribosomal protein L3 B224_5553 PF00573 Ribosomal protein L4/L1 family B224_5554 PF00276 Ribosomal protein L23 B224_5555 PF00181 Ribosomal Proteins L2, RNA binding domain B224_5555 PF03947 Ribosomal Proteins L2, C-terminal domain B224_5556 PF00203 Ribosomal protein S19 B224_5557 PF00237 Ribosomal protein L22p/L17e B224_5558 PF07650 KH domain B224_5558 PF00189 Ribosomal protein S3, C-terminal domain B224_5560 PF00252 Ribosomal protein L16p/L10e B224_5561 PF00831 Ribosomal L29 protein B224_5562 PF00366 Ribosomal protein S17 B224_5563 PF00238 Ribosomal protein L14p/L23e B224_5564 PF00467 KOW motif B224_5564 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 B224_5565 PF00281 Ribosomal protein L5 B224_5565 PF00673 ribosomal L5P family C-terminus B224_5566 PF00253 Ribosomal protein S14p/S29e B224_5567 PF00410 Ribosomal protein S8 B224_5568 PF00347 Ribosomal protein L6 B224_5569 PF00333 Ribosomal protein S5, N-terminal domain B224_5569 PF03719 Ribosomal protein S5, C-terminal domain B224_5571 PF00344 SecY translocase B224_5573 PF00416 Ribosomal protein S13/S18 B224_5574 PF01479 S4 domain B224_5574 PF00163 Ribosomal protein S4/S9 N-terminal domain B224_5576 PF01000 RNA polymerase Rpb3/RpoA insert domain B224_5576 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain B224_5576 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain B224_5579 PF01695 IstB-like ATP binding protein B224_5580 PF00665 Integrase core domain B224_5581 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin B224_5582 PF07969 Amidohydrolase family B224_5584 PF02537 CrcB-like protein, Camphor Resistance (CrcB) B224_5585 PF01209 ubiE/COQ5 methyltransferase family B224_5586 PF02036 SCP-2 sterol transfer family B224_5588 PF03109 ABC1 family B224_5589 PF02416 mttA/Hcf106 family B224_5590 PF02416 mttA/Hcf106 family B224_5591 PF00902 Sec-independent protein translocase protein (TatC) B224_5593 PF01026 TatD related DNase B224_5595 PF00490 Delta-aminolevulinic acid dehydratase B224_5596 PF01432 Peptidase family M3 B224_5599 PF03707 Bacterial signalling protein N terminal repeat B224_5599 PF00990 Diguanylate cyclase, GGDEF domain B224_5599 PF00563 EAL domain B224_5600 PF04445 Putative SAM-dependent methyltransferase B224_5604 PF02541 Ppx/GppA phosphatase family B224_5605 PF00270 DEAD/DEAH box helicase B224_5605 PF00271 Helicase conserved C-terminal domain B224_5606 PF00085 Thioredoxin B224_5607 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain B224_5607 PF07497 Rho termination factor, RNA-binding domain B224_5607 PF07498 Rho termination factor, N-terminal domain B224_5609 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase B224_5611 PF00175 Oxidoreductase NAD-binding domain B224_5612 PF01609 Transposase DDE domain B224_5612 PF13006 Insertion element 4 transposase N-terminal B224_5613 PF04380 Membrane fusogenic activity B224_5614 PF12262 Bacterial virulence factor lipase N-terminal B224_5616 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease B224_5616 PF01694 Rhomboid family B224_5618 PF00581 Rhodanese-like domain B224_5622 PF12833 Helix-turn-helix domain B224_5623 PF00005 ABC transporter B224_5624 PF12399 Branched-chain amino acid ATP-binding cassette transporter B224_5624 PF00005 ABC transporter B224_5626 PF11862 Domain of unknown function (DUF3382) B224_5626 PF02653 Branched-chain amino acid transport system / permease component B224_5627 PF02653 Branched-chain amino acid transport system / permease component B224_5628 PF13458 Periplasmic binding protein B224_5629 PF00356 Bacterial regulatory proteins, lacI family B224_5631 PF00158 Sigma-54 interaction domain B224_5631 PF01590 GAF domain B224_5633 PF00301 Rubredoxin B224_5633 PF00753 Metallo-beta-lactamase superfamily B224_5633 PF00258 Flavodoxin B224_5635 PF18113 Rubredoxin binding C-terminal domain B224_5635 PF07992 Pyridine nucleotide-disulphide oxidoreductase B224_5639 PF12801 4Fe-4S binding domain B224_5641 PF01212 Beta-eliminating lyase B224_5643 PF01609 Transposase DDE domain B224_5643 PF13808 DDE_Tnp_1-associated B224_5644 PF03222 Tryptophan/tyrosine permease family B224_5645 PF03222 Tryptophan/tyrosine permease family B224_5650 PF02092 Glycyl-tRNA synthetase beta subunit B224_5650 PF05746 DALR anticodon binding domain B224_5652 PF02091 Glycyl-tRNA synthetase alpha subunit B224_5653 PF03352 Methyladenine glycosylase B224_5660 PF13488 Glycine zipper B224_5660 PF00691 OmpA family B224_5661 PF01042 Endoribonuclease L-PSP B224_5663 PF01206 Sulfurtransferase TusA B224_5666 PF01547 Bacterial extracellular solute-binding protein B224_5668 PF00512 His Kinase A (phospho-acceptor) domain B224_5668 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5668 PF00672 HAMP domain B224_5670 PF00486 Transcriptional regulatory protein, C terminal B224_5670 PF00072 Response regulator receiver domain B224_5671 PF02803 Thiolase, C-terminal domain B224_5671 PF00108 Thiolase, N-terminal domain B224_5673 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain B224_5673 PF00378 Enoyl-CoA hydratase/isomerase B224_5673 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain B224_5674 PF13193 AMP-binding enzyme C-terminal domain B224_5674 PF00501 AMP-binding enzyme B224_5676 PF00557 Metallopeptidase family M24 B224_5677 PF09186 Domain of unknown function (DUF1949) B224_5677 PF01205 Uncharacterized protein family UPF0029 B224_5679 PF02386 Cation transport protein B224_5680 PF12724 Flavodoxin domain B224_5682 PF00899 ThiF family B224_5685 PF02657 Fe-S metabolism associated domain B224_5686 PF00266 Aminotransferase class-V B224_5687 PF13361 UvrD-like helicase C-terminal domain B224_5687 PF00580 UvrD/REP helicase N-terminal domain B224_5689 PF00563 EAL domain B224_5689 PF00990 Diguanylate cyclase, GGDEF domain B224_5689 PF03707 Bacterial signalling protein N terminal repeat B224_5691 PF00107 Zinc-binding dehydrogenase B224_5691 PF08240 Alcohol dehydrogenase GroES-like domain B224_5692 PF00155 Aminotransferase class I and II B224_5693 PF00440 Bacterial regulatory proteins, tetR family B224_5693 PF08360 QacR-like protein, C-terminal region B224_5694 PF01370 NAD dependent epimerase/dehydratase family B224_5696 PF13439 Glycosyltransferase Family 4 B224_5698 PF04932 O-Antigen ligase B224_5703 PF13808 DDE_Tnp_1-associated B224_5703 PF01609 Transposase DDE domain B224_5706 PF08240 Alcohol dehydrogenase GroES-like domain B224_5706 PF00107 Zinc-binding dehydrogenase B224_5711 PF03748 Flagellar basal body-associated protein FliL B224_5712 PF04345 Chorismate lyase B224_5713 PF01040 UbiA prenyltransferase family B224_5715 PF01553 Acyltransferase B224_5716 PF00717 Peptidase S24-like B224_5716 PF01726 LexA DNA binding domain B224_5721 PF01554 MatE B224_5722 PF00588 SpoU rRNA Methylase family B224_5723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase B224_5723 PF00672 HAMP domain B224_5723 PF16527 Two-component sensor protein CpxA, periplasmic domain B224_5723 PF00512 His Kinase A (phospho-acceptor) domain B224_5724 PF00072 Response regulator receiver domain B224_5724 PF00486 Transcriptional regulatory protein, C terminal B224_5726 PF01545 Cation efflux family B224_5726 PF16916 Dimerisation domain of Zinc Transporter B224_5727 PF06426 Serine acetyltransferase, N-terminal B224_5727 PF00132 Bacterial transferase hexapeptide (six repeats) B224_5729 PF06005 Cell division protein ZapB B224_5732 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain B224_5732 PF01367 5'-3' exonuclease, C-terminal SAM fold B224_5732 PF00476 DNA polymerase family A B224_5732 PF01612 3'-5' exonuclease B224_5734 PF00132 Bacterial transferase hexapeptide (six repeats) B224_5735 PF03060 Nitronate monooxygenase B224_5738 PF00445 Ribonuclease T2 family B224_5742 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase B224_5744 PF00990 Diguanylate cyclase, GGDEF domain B224_5745 PF00270 DEAD/DEAH box helicase B224_5745 PF00271 Helicase conserved C-terminal domain B224_5750 PF00753 Metallo-beta-lactamase superfamily B224_5751 PF13737 Transposase DDE domain B224_5758 PF13358 DDE superfamily endonuclease B224_5758 PF13592 Winged helix-turn helix B224_5760 PF13358 DDE superfamily endonuclease B224_5760 PF13592 Winged helix-turn helix B224_5762 PF01425 Amidase B224_5764 PF04371 Porphyromonas-type peptidyl-arginine deiminase B224_5765 PF03466 LysR substrate binding domain B224_5765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5771 PF00724 NADH:flavin oxidoreductase / NADH oxidase family B224_5773 PF00583 Acetyltransferase (GNAT) family B224_5775 PF16658 Class II release factor RF3, C-terminal domain B224_5775 PF03144 Elongation factor Tu domain 2 B224_5775 PF00009 Elongation factor Tu GTP binding domain B224_5777 PF00072 Response regulator receiver domain B224_5777 PF00990 Diguanylate cyclase, GGDEF domain B224_5778 PF13188 PAS domain B224_5778 PF03707 Bacterial signalling protein N terminal repeat B224_5778 PF00563 EAL domain B224_5778 PF00990 Diguanylate cyclase, GGDEF domain B224_5781 PF05762 VWA domain containing CoxE-like protein B224_5783 PF17868 AAA lid domain B224_5783 PF12592 Protein of unknown function (DUF3763) B224_5783 PF07728 AAA domain (dynein-related subfamily) B224_5785 PF00583 Acetyltransferase (GNAT) family B224_5788 PF00501 AMP-binding enzyme B224_5791 PF01177 Asp/Glu/Hydantoin racemase B224_5794 PF00155 Aminotransferase class I and II B224_5794 PF00392 Bacterial regulatory proteins, gntR family B224_5798 PF00209 Sodium:neurotransmitter symporter family B224_5799 PF00209 Sodium:neurotransmitter symporter family B224_5805 PF07690 Major Facilitator Superfamily B224_5808 PF01037 Lrp/AsnC ligand binding domain B224_5813 PF01047 MarR family B224_5814 PF16884 N-terminal domain of oxidoreductase B224_5814 PF00107 Zinc-binding dehydrogenase B224_5816 PF00293 NUDIX domain B224_5821 PF01641 SelR domain B224_5824 PF00128 Alpha amylase, catalytic domain B224_5824 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B224_5827 PF02806 Alpha amylase, C-terminal all-beta domain B224_5827 PF00128 Alpha amylase, catalytic domain B224_5827 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B224_5829 PF02446 4-alpha-glucanotransferase B224_5830 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain B224_5830 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_5831 PF01263 Aldose 1-epimerase B224_5833 PF02445 Quinolinate synthetase A protein B224_5835 PF13174 Tetratricopeptide repeat B224_5835 PF16331 TolA binding protein trimerisation B224_5836 PF00691 OmpA family B224_5837 PF04052 TolB amino-terminal domain B224_5837 PF07676 WD40-like Beta Propeller Repeat B224_5839 PF02472 Biopolymer transport protein ExbD/TolR B224_5840 PF01618 MotA/TolQ/ExbB proton channel family B224_5842 PF03061 Thioesterase superfamily B224_5843 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) B224_5844 PF08173 Membrane bound YbgT-like protein B224_5845 PF02322 Cytochrome bd terminal oxidase subunit II B224_5847 PF01654 Cytochrome bd terminal oxidase subunit I B224_5849 PF17864 RuvB AAA lid domain B224_5849 PF05496 Holliday junction DNA helicase RuvB P-loop domain B224_5849 PF05491 RuvB C-terminal winged helix domain B224_5851 PF01330 RuvA N terminal domain B224_5851 PF07499 RuvA, C-terminal domain B224_5852 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) B224_5852 PF04073 Aminoacyl-tRNA editing domain B224_5852 PF03129 Anticodon binding domain B224_5854 PF00106 short chain dehydrogenase B224_5858 PF00378 Enoyl-CoA hydratase/isomerase B224_5859 PF10952 Protein of unknown function (DUF2753) B224_5861 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle B224_5864 PF08447 PAS fold B224_5864 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_5866 PF03372 Endonuclease/Exonuclease/phosphatase family B224_5871 PF00270 DEAD/DEAH box helicase B224_5871 PF00271 Helicase conserved C-terminal domain B224_5872 PF08534 Redoxin B224_5873 PF00403 Heavy-metal-associated domain B224_5876 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) B224_5876 PF18494 Pullulanase Ins domain B224_5876 PF11852 Domain of unknown function (DUF3372) B224_5876 PF17967 Pullulanase N2 domain B224_5876 PF03714 Bacterial pullanase-associated domain B224_5877 PF01609 Transposase DDE domain B224_5881 PF02583 Metal-sensitive transcriptional repressor B224_5884 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) B224_5885 PF01270 Glycosyl hydrolases family 8 B224_5887 PF03170 Bacterial cellulose synthase subunit B224_5891 PF07238 PilZ domain B224_5891 PF00535 Glycosyl transferase family 2 B224_5892 PF06564 Cellulose biosynthesis protein BcsQ B224_5895 PF11658 Cellulose biosynthesis protein BcsG B224_5900 PF00155 Aminotransferase class I and II B224_5902 PF03466 LysR substrate binding domain B224_5902 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5904 PF04055 Radical SAM superfamily B224_5906 PF11230 Protein of unknown function (DUF3029) B224_5916 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain B224_5916 PF17200 Single Cache domain 2 B224_5916 PF00672 HAMP domain B224_5919 PF18416 N-acetylglucosamine binding protein domain 2 B224_5919 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading B224_5923 PF03466 LysR substrate binding domain B224_5923 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family B224_5924 PF00005 ABC transporter B224_5924 PF12857 TOBE-like domain B224_5926 PF00528 Binding-protein-dependent transport system inner membrane component B224_5927 PF00528 Binding-protein-dependent transport system inner membrane component B224_5932 PF01381 Helix-turn-helix B224_5932 PF07883 Cupin domain B224_5933 PF03594 Benzoate membrane transport protein B224_5935 PF01037 Lrp/AsnC ligand binding domain B224_5938 PF04204 Homoserine O-succinyltransferase B224_5942 PF00994 Probable molybdopterin binding domain B224_5942 PF02464 Competence-damaged protein B224_5943 PF04307 LexA-binding, inner membrane-associated putative hydrolase B224_5946 PF07722 Peptidase C26 B224_5948 PF13006 Insertion element 4 transposase N-terminal B224_5948 PF01609 Transposase DDE domain B224_5949 PF13419 Haloacid dehalogenase-like hydrolase B224_5951 PF02899 Phage integrase, N-terminal SAM-like domain B224_5951 PF00589 Phage integrase family B224_5953 PF01678 Diaminopimelate epimerase B224_5955 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain B224_5955 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain B224_5957 PF01491 Frataxin-like domain B224_5958 PF02230 Phospholipase/Carboxylesterase B224_5961 PF01295 Adenylate cyclase, class-I B224_5961 PF12633 Adenylate cyclase NT domain B224_5962 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain B224_5962 PF03900 Porphobilinogen deaminase, C-terminal domain B224_5964 PF02602 Uroporphyrinogen-III synthase HemD B224_5966 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase B224_5968 PF07219 HemY protein N-terminus B224_5968 PF07719 Tetratricopeptide repeat B224_5970 PF13006 Insertion element 4 transposase N-terminal B224_5970 PF01609 Transposase DDE domain B224_5971 PF03692 Putative zinc- or iron-chelating domain B224_5972 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded B224_5973 PF00267 Gram-negative porin B224_5975 PF00583 Acetyltransferase (GNAT) family B224_5978 PF00593 TonB dependent receptor B224_5978 PF07715 TonB-dependent Receptor Plug Domain B224_5983 PF01638 HxlR-like helix-turn-helix B224_5984 PF08803 Putative mono-oxygenase ydhR B224_5986 PF06055 Exopolysaccharide synthesis, ExoD B224_5988 PF17158 Membrane-associated sensor, integral membrane domain B224_5988 PF00990 Diguanylate cyclase, GGDEF domain B224_5990 PF13036 Peptidoglycan-synthase activator LpoB B224_5996 PF05598 Transposase domain (DUF772) B224_5996 PF01609 Transposase DDE domain B224_5997 PF01609 Transposase DDE domain B224_5997 PF05598 Transposase domain (DUF772) B224_5998 PF01609 Transposase DDE domain B224_6000 PF01609 Transposase DDE domain B224_6001 PF04055 Radical SAM superfamily B224_6001 PF06968 Biotin and Thiamin Synthesis associated domain B224_6002 PF05690 Thiazole biosynthesis protein ThiG B224_6005 PF00899 ThiF family B224_6006 PF02581 Thiamine monophosphate synthase B224_6007 PF01964 Radical SAM ThiC family B224_6007 PF13667 ThiC-associated domain B224_6009 PF13737 Transposase DDE domain B224_6010 PF01609 Transposase DDE domain B224_6011 PF17425 Arylsulfotransferase Ig-like domain B224_6011 PF05935 Arylsulfotransferase (ASST) B224_6012 PF13808 DDE_Tnp_1-associated B224_6012 PF01609 Transposase DDE domain B224_6013 PF14706 Transposase DNA-binding B224_6013 PF01609 Transposase DDE domain B224_6013 PF02281 Transposase Tn5 dimerisation domain B224_6016 PF00072 Response regulator receiver domain B224_6016 PF00486 Transcriptional regulatory protein, C terminal B224_6019 PF08443 RimK-like ATP-grasp domain B224_6019 PF18030 RimK PreATP-grasp domain B224_6020 PF02310 B12 binding domain B224_6020 PF02607 B12 binding domain B224_6020 PF02965 Vitamin B12 dependent methionine synthase, activation domain B224_6020 PF00809 Pterin binding enzyme B224_6020 PF02574 Homocysteine S-methyltransferase B224_6022 PF00999 Sodium/hydrogen exchanger family B224_6027 PF05598 Transposase domain (DUF772) B224_6027 PF01609 Transposase DDE domain B224_6028 PF13808 DDE_Tnp_1-associated B224_6028 PF01609 Transposase DDE domain B224_6030 PF13808 DDE_Tnp_1-associated B224_6030 PF01609 Transposase DDE domain B224_6032 PF01609 Transposase DDE domain B224_6032 PF05598 Transposase domain (DUF772) B224_6033 PF01695 IstB-like ATP binding protein B224_6039 PF04228 Putative neutral zinc metallopeptidase B224_6040 PF01609 Transposase DDE domain B224_6041 PF04228 Putative neutral zinc metallopeptidase B224_6043 PF07690 Major Facilitator Superfamily B224_6045 PF01914 MarC family integral membrane protein B224_6047 PF01609 Transposase DDE domain B224_6047 PF13006 Insertion element 4 transposase N-terminal B224_6049 PF01523 Putative modulator of DNA gyrase B224_6050 PF00795 Carbon-nitrogen hydrolase B224_6053 PF13502 AsmA-like C-terminal region B224_6053 PF13116 Protein of unknown function B224_6055 PF10150 Ribonuclease E/G family B224_6055 PF00575 S1 RNA binding domain B224_6056 PF02545 Maf-like protein B224_6057 PF04093 rod shape-determining protein MreD B224_6058 PF04085 rod shape-determining protein MreC B224_6061 PF13808 DDE_Tnp_1-associated B224_6061 PF01609 Transposase DDE domain B224_6074 PF00990 Diguanylate cyclase, GGDEF domain B224_6074 PF17157 Gammaproteobacterial periplasmic sensor domain B224_6074 PF00563 EAL domain B224_6075 PF05598 Transposase domain (DUF772) B224_6075 PF01609 Transposase DDE domain B224_6077 PF00563 EAL domain B224_6077 PF12792 CSS motif domain associated with EAL B224_6078 PF01699 Sodium/calcium exchanger protein B224_6080 PF00221 Aromatic amino acid lyase B224_6082 PF17391 Urocanase N-terminal domain B224_6082 PF17392 Urocanase C-terminal domain B224_6082 PF01175 Urocanase Rossmann-like domain B224_6084 PF00491 Arginase family B224_6086 PF01979 Amidohydrolase family B224_6087 PF01609 Transposase DDE domain B224_6087 PF13006 Insertion element 4 transposase N-terminal B224_6088 PF00392 Bacterial regulatory proteins, gntR family B224_6088 PF07702 UTRA domain B224_6089 PF00484 Carbonic anhydrase B224_6090 PF04542 Sigma-70 region 2 B224_6090 PF00140 Sigma-70 factor, region 1.2 B224_6090 PF04545 Sigma-70, region 4 B224_6091 PF18075 FtsX extracellular domain B224_6092 PF00005 ABC transporter B224_6094 PF02881 SRP54-type protein, helical bundle domain B224_6094 PF00448 SRP54-type protein, GTPase domain B224_p00003 PF13614 AAA domain B224_p00028 PF00436 Single-strand binding protein family