B224_0005 SM00344 helix_turn_helix ASNC type B224_0008 SM00530 Helix-turn-helix XRE-family like proteins B224_0025 SM00382 ATPases associated with a variety of cellular activities B224_0026 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_0030 SM00382 ATPases associated with a variety of cellular activities B224_0043 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_0044 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_0056 SM00749 bacterial OsmY and nodulation domain B224_0066 SM00671 Sel1-like repeats. B224_0072 SM00857 Resolvase, N terminal domain B224_0099 SM00842 Cell division protein FtsA B224_0101 SM00864 Tubulin/FtsZ family, GTPase domain B224_0101 SM00865 Tubulin/FtsZ family, C-terminal domain B224_0104 SM00957 SecA DEAD-like domain B224_0104 SM00958 SecA preprotein cross-linking domain B224_0118 SM00644 B224_0118 B224_0120 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_0120 SM00895 B224_0120 B224_0126 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_0126 SM00267 diguanylate cyclase B224_0130 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0134 SM00052 Putative diguanylate phosphodiesterase B224_0140 SM00833 Cobalamin synthesis protein cobW C-terminal domain B224_0148 SM00905 Dihydroneopterin aldolase B224_0149 SM01207 B224_0149 B224_0167 SM00344 helix_turn_helix ASNC type B224_0169 SM01266 B224_0169 B224_0172 SM00642 Alpha-amylase domain B224_0176 SM00354 helix_turn _helix lactose operon repressor B224_0190 SM00354 helix_turn _helix lactose operon repressor B224_0193 SM00870 B224_0193 B224_0199 SM00851 MGS-like domain B224_0220 SM00382 ATPases associated with a variety of cellular activities B224_0233 SM01130 B224_0233 B224_0234 SM00267 diguanylate cyclase B224_0248 SM00478 endonuclease III B224_0251 SM00382 ATPases associated with a variety of cellular activities B224_0259 SM01118 B224_0259 B224_0264 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_0264 SM00895 B224_0264 B224_0269 SM00363 S4 RNA-binding domain B224_0274 SM00382 ATPases associated with a variety of cellular activities B224_0289 SM00421 helix_turn_helix, Lux Regulon B224_0302 SM00342 helix_turn_helix, arabinose operon control protein B224_0314 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_0316 SM00450 Rhodanese Homology Domain B224_0320 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_0320 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_0320 SM00267 diguanylate cyclase B224_0326 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_0342 SM01266 B224_0342 B224_0349 SM00822 B224_0349 B224_0354 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0357 SM00287 Bacterial SH3 domain homologues B224_0362 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_0388 SM00358 Double-stranded RNA binding motif B224_0388 SM00535 Ribonuclease III family B224_0392 SM00644 B224_0392 B224_0394 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0394 SM00387 Histidine kinase-like ATPases B224_0394 SM00388 His Kinase A (phosphoacceptor) domain B224_0394 SM00448 cheY-homologous receiver domain B224_0399 SM00954 Region found in RelA / SpoT proteins B224_0405 SM01192 B224_0405 B224_0405 SM01193 B224_0405 B224_0415 SM00257 Lysin motif B224_0423 SM00400 zinc finger B224_0423 SM00493 B224_0423 B224_0423 SM00766 DNA primase DnaG DnaB-binding B224_0427 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B224_0427 SM00632 B224_0427 B224_0427 SM00642 Alpha-amylase domain B224_0432 SM01209 B224_0432 B224_0432 SM01210 B224_0432 B224_0434 SM00798 AICARFT/IMPCHase bienzyme B224_0434 SM00851 MGS-like domain B224_0436 SM00422 helix_turn_helix, mercury resistance B224_0440 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_0449 SM00244 prohibitin homologues B224_0463 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0468 SM00382 ATPases associated with a variety of cellular activities B224_0481 SM00382 ATPases associated with a variety of cellular activities B224_0499 SM00487 DEAD-like helicases superfamily B224_0499 SM00490 helicase superfamily c-terminal domain B224_0499 SM00847 Helicase associated domain (HA2) Add an annotation B224_0509 SM00014 Acid phosphatase homologues B224_0533 SM00382 ATPases associated with a variety of cellular activities B224_0536 SM00448 cheY-homologous receiver domain B224_0540 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_0585 SM00327 von Willebrand factor (vWF) type A domain B224_0595 SM00382 ATPases associated with a variety of cellular activities B224_0596 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_0602 SM00448 cheY-homologous receiver domain B224_0604 SM00382 ATPases associated with a variety of cellular activities B224_0610 SM00052 Putative diguanylate phosphodiesterase B224_0620 SM00450 Rhodanese Homology Domain B224_0625 SM00382 ATPases associated with a variety of cellular activities B224_0635 SM00354 helix_turn _helix lactose operon repressor B224_0647 SM00052 Putative diguanylate phosphodiesterase B224_0651 SM00091 PAS domain B224_0651 SM00267 diguanylate cyclase B224_0653 SM00342 helix_turn_helix, arabinose operon control protein B224_0662 SM00479 B224_0662 B224_0663 SM00357 Cold shock protein domain B224_0666 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0666 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0671 SM00495 Chitin-binding domain type 3 B224_0671 SM00636 B224_0671 B224_0675 SM00028 Tetratricopeptide repeats B224_0695 SM00382 ATPases associated with a variety of cellular activities B224_0696 SM00382 ATPases associated with a variety of cellular activities B224_0707 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B224_0717 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_0719 SM01012 B224_0719 B224_0724 SM00382 ATPases associated with a variety of cellular activities B224_0733 SM01057 Eukaryotic-type carbonic anhydrase B224_0737 SM00822 B224_0737 B224_0739 SM00825 Beta-ketoacyl synthase B224_0742 SM00852 Probable molybdopterin binding domain B224_0752 SM00382 ATPases associated with a variety of cellular activities B224_0764 SM00937 B224_0764 B224_0766 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0766 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0768 SM00052 Putative diguanylate phosphodiesterase B224_0768 SM00267 diguanylate cyclase B224_0768 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0772 SM00870 B224_0772 B224_0775 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_0784 SM01266 B224_0784 B224_0787 SM00829 Enoylreductase B224_0793 SM00878 Biotin carboxylase C-terminal domain B224_0801 SM00052 Putative diguanylate phosphodiesterase B224_0801 SM00267 diguanylate cyclase B224_0809 SM00448 cheY-homologous receiver domain B224_0809 SM00862 Transcriptional regulatory protein, C terminal B224_0812 SM00387 Histidine kinase-like ATPases B224_0812 SM00388 His Kinase A (phosphoacceptor) domain B224_0812 SM00448 cheY-homologous receiver domain B224_0829 SM00382 ATPases associated with a variety of cellular activities B224_0836 SM00861 Transketolase, pyrimidine binding domain B224_0846 SM01103 B224_0846 B224_0848 SM00382 ATPases associated with a variety of cellular activities B224_0857 SM00316 Ribosomal protein S1-like RNA-binding domain B224_0864 SM01387 B224_0864 B224_0865 SM00316 Ribosomal protein S1-like RNA-binding domain B224_0865 SM00322 K homology RNA-binding domain B224_0904 SM00842 Cell division protein FtsA B224_0909 SM00849 Metallo-beta-lactamase superfamily B224_0929 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_0929 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_0940 SM01236 B224_0940 B224_0941 SM00822 B224_0941 B224_0943 SM00448 cheY-homologous receiver domain B224_0943 SM00862 Transcriptional regulatory protein, C terminal B224_0944 SM00387 Histidine kinase-like ATPases B224_0944 SM00388 His Kinase A (phosphoacceptor) domain B224_0947 SM01240 B224_0947 B224_0951 SM00841 Elongation factor P, C-terminal B224_0951 SM01185 B224_0951 B224_0958 SM00267 diguanylate cyclase B224_0962 SM00267 diguanylate cyclase B224_0966 SM00357 Cold shock protein domain B224_0969 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_0973 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_0973 SM01091 Transporter associated domain B224_0994 SM00936 Penicillin-binding protein 5, C-terminal domain B224_0998 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_1006 SM00382 ATPases associated with a variety of cellular activities B224_1022 SM01150 B224_1022 B224_1029 SM01022 B224_1029 B224_1038 SM01400 B224_1038 B224_1043 SM00937 B224_1043 B224_1051 SM00986 Uracil DNA glycosylase superfamily B224_1051 SM00987 UreE urease accessory protein, C-terminal domain B224_1066 SM00732 Likely ribonuclease with RNase H fold. B224_1072 SM00731 SprT homologues. B224_1074 SM00861 Transketolase, pyrimidine binding domain B224_1087 SM00363 S4 RNA-binding domain B224_1091 SM00342 helix_turn_helix, arabinose operon control protein B224_1093 SM00788 Adenylosuccinate synthetase B224_1107 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B224_1107 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B224_1107 SM00493 B224_1107 B224_1111 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_1117 SM00382 ATPases associated with a variety of cellular activities B224_1119 SM00382 ATPases associated with a variety of cellular activities B224_1129 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_1139 SM00382 ATPases associated with a variety of cellular activities B224_1145 SM00857 Resolvase, N terminal domain B224_1148 SM00382 ATPases associated with a variety of cellular activities B224_1164 SM00073 Histidine Phosphotransfer domain B224_1164 SM00260 Two component signalling adaptor domain B224_1164 SM00387 Histidine kinase-like ATPases B224_1164 SM01231 B224_1164 B224_1166 SM00448 cheY-homologous receiver domain B224_1172 SM00260 Two component signalling adaptor domain B224_1173 SM00260 Two component signalling adaptor domain B224_1175 SM00382 ATPases associated with a variety of cellular activities B224_1211 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_1211 SM00091 PAS domain B224_1211 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_1214 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_1218 SM00919 Malic enzyme, NAD binding domain B224_1218 SM01274 B224_1218 B224_1225 SM00421 helix_turn_helix, Lux Regulon B224_1233 SM00382 ATPases associated with a variety of cellular activities B224_1240 SM00495 Chitin-binding domain type 3 B224_1247 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. B224_1266 SM00635 Bacterial Ig-like domain 2 B224_1275 SM00342 helix_turn_helix, arabinose operon control protein B224_1276 SM01329 B224_1276 B224_1286 SM00528 Domain in histone-like proteins of HNS family B224_1291 SM00382 ATPases associated with a variety of cellular activities B224_1296 SM01131 B224_1296 B224_1300 SM00267 diguanylate cyclase B224_1307 SM00271 DnaJ molecular chaperone homology domain B224_1314 SM00640 Glycosyl hydrolases family 32 B224_1315 SM00354 helix_turn _helix lactose operon repressor B224_1321 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_1331 SM00091 PAS domain B224_1331 SM00267 diguanylate cyclase B224_1335 SM01321 B224_1335 B224_1348 SM01321 B224_1348 B224_1351 SM00028 Tetratricopeptide repeats B224_1351 SM00448 cheY-homologous receiver domain B224_1388 SM00530 Helix-turn-helix XRE-family like proteins B224_1398 SM00382 ATPases associated with a variety of cellular activities B224_1407 SM00052 Putative diguanylate phosphodiesterase B224_1407 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_1407 SM00091 PAS domain B224_1407 SM00267 diguanylate cyclase B224_1409 SM00450 Rhodanese Homology Domain B224_1421 SM01359 B224_1421 B224_1421 SM01360 B224_1421 B224_1425 SM00981 B224_1425 B224_1448 SM00478 endonuclease III B224_1448 SM00525 B224_1448 B224_1451 SM00900 B224_1451 B224_1464 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_1464 SM00091 PAS domain B224_1464 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_1474 SM00487 DEAD-like helicases superfamily B224_1474 SM00490 helicase superfamily c-terminal domain B224_1481 SM00448 cheY-homologous receiver domain B224_1481 SM00850 LytTr DNA-binding domain B224_1482 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_1482 SM00387 Histidine kinase-like ATPases B224_1483 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_1493 SM00382 ATPases associated with a variety of cellular activities B224_1494 SM00382 ATPases associated with a variety of cellular activities B224_1498 SM01005 Alanine racemase, C-terminal domain B224_1569 SM00382 ATPases associated with a variety of cellular activities B224_1591 SM00460 Transglutaminase/protease-like homologues B224_1612 SM00493 B224_1612 B224_1614 SM00387 Histidine kinase-like ATPases B224_1628 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_1628 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_1628 SM01049 B224_1628 B224_1633 SM00052 Putative diguanylate phosphodiesterase B224_1633 SM00267 diguanylate cyclase B224_1649 SM00823 Phosphopantetheine attachment site B224_1651 SM00822 B224_1651 B224_1656 SM00823 Phosphopantetheine attachment site B224_1662 SM00382 ATPases associated with a variety of cellular activities B224_1675 SM00893 Electron transfer flavoprotein domain B224_1676 SM00893 Electron transfer flavoprotein domain B224_1701 SM00497 Intron encoded nuclease repeat motif B224_1709 SM00530 Helix-turn-helix XRE-family like proteins B224_1747 SM00060 Fibronectin type 3 domain B224_1750 SM01321 B224_1750 B224_1757 SM00062 Bacterial periplasmic substrate-binding proteins B224_1768 SM01007 Class II Aldolase and Adducin N-terminal domain B224_1772 SM00382 ATPases associated with a variety of cellular activities B224_1785 SM00342 helix_turn_helix, arabinose operon control protein B224_1799 SM00382 ATPases associated with a variety of cellular activities B224_1803 SM01126 B224_1803 B224_1807 SM01126 B224_1807 B224_1829 SM00360 RNA recognition motif B224_1835 SM00091 PAS domain B224_1836 SM00448 cheY-homologous receiver domain B224_1840 SM00052 Putative diguanylate phosphodiesterase B224_1840 SM00267 diguanylate cyclase B224_1855 SM00316 Ribosomal protein S1-like RNA-binding domain B224_1857 SM00411 bacterial (prokaryotic) histone like domain B224_1859 SM00028 Tetratricopeptide repeats B224_1860 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family B224_1862 SM01144 B224_1862 B224_1876 SM01154 B224_1876 B224_1891 SM00487 DEAD-like helicases superfamily B224_1891 SM00490 helicase superfamily c-terminal domain B224_1894 SM00530 Helix-turn-helix XRE-family like proteins B224_1910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_1944 SM00487 DEAD-like helicases superfamily B224_1944 SM00490 helicase superfamily c-terminal domain B224_1964 SM00822 B224_1964 B224_1966 SM00342 helix_turn_helix, arabinose operon control protein B224_1966 SM00871 Bacterial transcription activator, effector binding domain B224_1975 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_2009 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_2009 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_2009 SM01049 B224_2009 B224_2013 SM00091 PAS domain B224_2013 SM00387 Histidine kinase-like ATPases B224_2014 SM00448 cheY-homologous receiver domain B224_2022 SM00062 Bacterial periplasmic substrate-binding proteins B224_2027 SM00487 DEAD-like helicases superfamily B224_2027 SM00490 helicase superfamily c-terminal domain B224_2032 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_2036 SM00763 PrkA AAA domain B224_2039 SM00487 DEAD-like helicases superfamily B224_2039 SM00490 helicase superfamily c-terminal domain B224_2061 SM00387 Histidine kinase-like ATPases B224_2061 SM00388 His Kinase A (phosphoacceptor) domain B224_2061 SM00448 cheY-homologous receiver domain B224_2064 SM00382 ATPases associated with a variety of cellular activities B224_2066 SM00382 ATPases associated with a variety of cellular activities B224_2087 SM00518 AP endonuclease family 2 B224_2096 SM00090 RIO-like kinase B224_2101 SM00486 DNA polymerase type-B family B224_2140 SM00422 helix_turn_helix, mercury resistance B224_2146 SM00052 Putative diguanylate phosphodiesterase B224_2153 SM00028 Tetratricopeptide repeats B224_2156 SM00327 von Willebrand factor (vWF) type A domain B224_2165 SM01322 B224_2165 B224_2180 SM00382 ATPases associated with a variety of cellular activities B224_2186 SM00237 Domains in Na-Ca exchangers and integrin-beta4 B224_2196 SM00073 Histidine Phosphotransfer domain B224_2196 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_2196 SM00091 PAS domain B224_2196 SM00387 Histidine kinase-like ATPases B224_2196 SM00388 His Kinase A (phosphoacceptor) domain B224_2196 SM00448 cheY-homologous receiver domain B224_2198 SM00091 PAS domain B224_2199 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_2214 SM00491 B224_2214 B224_2221 SM00341 Helicase and RNase D C-terminal B224_2221 SM00474 3'-5' exonuclease B224_2226 SM00342 helix_turn_helix, arabinose operon control protein B224_2233 SM00382 ATPases associated with a variety of cellular activities B224_2240 SM01126 B224_2240 B224_2243 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_2245 SM00382 ATPases associated with a variety of cellular activities B224_2245 SM00487 DEAD-like helicases superfamily B224_2245 SM00490 helicase superfamily c-terminal domain B224_2245 SM00847 Helicase associated domain (HA2) Add an annotation B224_2248 SM00387 Histidine kinase-like ATPases B224_2248 SM00388 His Kinase A (phosphoacceptor) domain B224_2248 SM00448 cheY-homologous receiver domain B224_2249 SM00448 cheY-homologous receiver domain B224_2252 SM00849 Metallo-beta-lactamase superfamily B224_2253 SM00450 Rhodanese Homology Domain B224_2256 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B224_2258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_2261 SM00880 B224_2261 B224_2278 SM00316 Ribosomal protein S1-like RNA-binding domain B224_2279 SM00363 S4 RNA-binding domain B224_2288 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. B224_2290 SM00822 B224_2290 B224_2293 SM00825 Beta-ketoacyl synthase B224_2299 SM00382 ATPases associated with a variety of cellular activities B224_2318 SM00382 ATPases associated with a variety of cellular activities B224_2320 SM00981 B224_2320 B224_2329 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_2329 SM00245 tail specific protease B224_2330 SM00945 ProQ/FINO family B224_2343 SM00100 Cyclic nucleotide-monophosphate binding domain B224_2343 SM00419 helix_turn_helix, cAMP Regulatory protein B224_2351 SM00382 ATPases associated with a variety of cellular activities B224_2355 SM00354 helix_turn _helix lactose operon repressor B224_2357 SM00267 diguanylate cyclase B224_2362 SM00448 cheY-homologous receiver domain B224_2365 SM00062 Bacterial periplasmic substrate-binding proteins B224_2365 SM00387 Histidine kinase-like ATPases B224_2365 SM00388 His Kinase A (phosphoacceptor) domain B224_2365 SM00448 cheY-homologous receiver domain B224_2366 SM00411 bacterial (prokaryotic) histone like domain B224_2368 SM00873 B3/4 domain B224_2368 SM00874 tRNA synthetase B5 domain B224_2368 SM00896 Ferredoxin-fold anticodon binding domain B224_2374 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B224_2377 SM00671 Sel1-like repeats. B224_2381 SM00434 DNA Topoisomerase IV B224_2390 SM00925 MltA specific insert domain B224_2399 SM00354 helix_turn _helix lactose operon repressor B224_2403 SM00487 DEAD-like helicases superfamily B224_2403 SM00490 helicase superfamily c-terminal domain B224_2404 SM00062 Bacterial periplasmic substrate-binding proteins B224_2407 SM00463 Small MutS-related domain B224_2409 SM00855 Phosphoglycerate mutase family B224_2416 SM00495 Chitin-binding domain type 3 B224_2418 SM00782 PhnA Zinc-Ribbon B224_2449 SM00342 helix_turn_helix, arabinose operon control protein B224_2454 SM01144 B224_2454 B224_2457 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. B224_2459 SM00487 DEAD-like helicases superfamily B224_2459 SM00490 helicase superfamily c-terminal domain B224_2468 SM01118 B224_2468 B224_2475 SM00342 helix_turn_helix, arabinose operon control protein B224_2478 SM00822 B224_2478 B224_2484 SM00267 diguanylate cyclase B224_2499 SM00382 ATPases associated with a variety of cellular activities B224_2509 SM00857 Resolvase, N terminal domain B224_2515 SM00487 DEAD-like helicases superfamily B224_2521 SM00885 D5 N terminal like B224_2527 SM00822 B224_2527 B224_2542 SM00878 Biotin carboxylase C-terminal domain B224_2544 SM00422 helix_turn_helix, mercury resistance B224_2555 SM00100 Cyclic nucleotide-monophosphate binding domain B224_2555 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_2557 SM00479 B224_2557 B224_2562 SM00382 ATPases associated with a variety of cellular activities B224_2565 SM00411 bacterial (prokaryotic) histone like domain B224_2567 SM00382 ATPases associated with a variety of cellular activities B224_2567 SM00464 Found in ATP-dependent protease La (LON) B224_2568 SM00382 ATPases associated with a variety of cellular activities B224_2568 SM00994 ClpX C4-type zinc finger B224_2568 SM01086 C-terminal, D2-small domain, of ClpB protein B224_2575 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_2577 SM00382 ATPases associated with a variety of cellular activities B224_2583 SM00487 DEAD-like helicases superfamily B224_2583 SM00490 helicase superfamily c-terminal domain B224_2583 SM00982 B224_2583 B224_2583 SM01058 CarD-like/TRCF domain B224_2591 SM00855 Phosphoglycerate mutase family B224_2595 SM00364 Leucine-rich repeats, bacterial type B224_2595 SM00369 Leucine-rich repeats, typical (most populated) subfamily B224_2602 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_2602 SM01240 B224_2602 B224_2611 SM00642 Alpha-amylase domain B224_2619 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_2621 SM00267 diguanylate cyclase B224_2621 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_2626 SM00091 PAS domain B224_2626 SM00382 ATPases associated with a variety of cellular activities B224_2638 SM00382 ATPases associated with a variety of cellular activities B224_2644 SM00382 ATPases associated with a variety of cellular activities B224_2646 SM00382 ATPases associated with a variety of cellular activities B224_2649 SM00354 helix_turn _helix lactose operon repressor B224_2660 SM00382 ATPases associated with a variety of cellular activities B224_2663 SM00843 B224_2663 B224_2664 SM00344 helix_turn_helix ASNC type B224_2665 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B224_2665 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B224_2668 SM00267 diguanylate cyclase B224_2668 SM00448 cheY-homologous receiver domain B224_2672 SM00316 Ribosomal protein S1-like RNA-binding domain B224_2673 SM00382 ATPases associated with a variety of cellular activities B224_2673 SM01086 C-terminal, D2-small domain, of ClpB protein B224_2675 SM00357 Cold shock protein domain B224_2676 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_2681 SM00873 B3/4 domain B224_2691 SM00881 CoA binding domain B224_2698 SM00861 Transketolase, pyrimidine binding domain B224_2710 SM00825 Beta-ketoacyl synthase B224_2724 SM00382 ATPases associated with a variety of cellular activities B224_2740 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region B224_2741 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_2741 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B224_2753 SM01211 B224_2753 B224_2756 SM00062 Bacterial periplasmic substrate-binding proteins B224_2762 SM00564 beta-propeller repeat B224_2769 SM00530 Helix-turn-helix XRE-family like proteins B224_2771 SM00028 Tetratricopeptide repeats B224_2774 SM00562 B224_2774 B224_2781 SM00271 DnaJ molecular chaperone homology domain B224_2794 SM00028 Tetratricopeptide repeats B224_2795 SM00450 Rhodanese Homology Domain B224_2799 SM01323 B224_2799 B224_2805 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_2819 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_2820 SM01126 B224_2820 B224_2840 SM00382 ATPases associated with a variety of cellular activities B224_2852 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_2857 SM00479 B224_2857 B224_2866 SM00487 DEAD-like helicases superfamily B224_2866 SM00490 helicase superfamily c-terminal domain B224_2873 SM01091 Transporter associated domain B224_2896 SM00267 diguanylate cyclase B224_2899 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_2899 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_2903 SM00342 helix_turn_helix, arabinose operon control protein B224_2911 SM00882 Coenzyme A transferase B224_2912 SM00882 Coenzyme A transferase B224_2923 SM00829 Enoylreductase B224_2946 SM00859 Semialdehyde dehydrogenase, NAD binding domain B224_2950 SM00014 Acid phosphatase homologues B224_2956 SM00382 ATPases associated with a variety of cellular activities B224_2957 SM00382 ATPases associated with a variety of cellular activities B224_2961 SM00382 ATPases associated with a variety of cellular activities B224_2973 SM00052 Putative diguanylate phosphodiesterase B224_2973 SM00267 diguanylate cyclase B224_2980 SM00382 ATPases associated with a variety of cellular activities B224_2982 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_2989 SM00422 helix_turn_helix, mercury resistance B224_2992 SM01351 B224_2992 B224_2997 SM00487 DEAD-like helicases superfamily B224_2997 SM00490 helicase superfamily c-terminal domain B224_3007 SM00917 LeuA allosteric (dimerisation) domain B224_3009 SM00851 MGS-like domain B224_3009 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B224_3011 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain B224_3022 SM00382 ATPases associated with a variety of cellular activities B224_3026 SM00062 Bacterial periplasmic substrate-binding proteins B224_3029 SM00382 ATPases associated with a variety of cellular activities B224_3035 SM00899 B224_3035 B224_3048 SM00267 diguanylate cyclase B224_3063 SM00840 B224_3063 B224_3069 SM00635 Bacterial Ig-like domain 2 B224_3072 SM01321 B224_3072 B224_3081 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_3081 SM00465 GIY-YIG type nucleases (URI domain) B224_3082 SM00421 helix_turn_helix, Lux Regulon B224_3088 SM00382 ATPases associated with a variety of cellular activities B224_3110 SM00528 Domain in histone-like proteins of HNS family B224_3124 SM00528 Domain in histone-like proteins of HNS family B224_3129 SM00487 DEAD-like helicases superfamily B224_3130 SM00506 Appr-1"-p processing enzyme B224_3179 SM00491 B224_3179 B224_3185 SM00098 Alkaline phosphatase homologues B224_3188 SM00098 Alkaline phosphatase homologues B224_3193 SM00421 helix_turn_helix, Lux Regulon B224_3193 SM00448 cheY-homologous receiver domain B224_3194 SM00387 Histidine kinase-like ATPases B224_3196 SM00267 diguanylate cyclase B224_3200 SM00062 Bacterial periplasmic substrate-binding proteins B224_3200 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B224_3202 SM00382 ATPases associated with a variety of cellular activities B224_3212 SM01091 Transporter associated domain B224_3215 SM00382 ATPases associated with a variety of cellular activities B224_3234 SM00382 ATPases associated with a variety of cellular activities B224_3234 SM00448 cheY-homologous receiver domain B224_3236 SM00091 PAS domain B224_3236 SM00387 Histidine kinase-like ATPases B224_3236 SM00388 His Kinase A (phosphoacceptor) domain B224_3237 SM00382 ATPases associated with a variety of cellular activities B224_3248 SM00116 Domain in cystathionine beta-synthase and other proteins. B224_3248 SM00924 MgtE intracellular N domain B224_3250 SM01321 B224_3250 B224_3254 SM00047 Lysozyme subfamily 2 B224_3265 SM00138 Methyltransferase, chemotaxis proteins B224_3266 SM00260 Two component signalling adaptor domain B224_3266 SM00448 cheY-homologous receiver domain B224_3267 SM00858 B224_3267 B224_3275 SM00363 S4 RNA-binding domain B224_3287 SM00357 Cold shock protein domain B224_3291 SM00861 Transketolase, pyrimidine binding domain B224_3298 SM00487 DEAD-like helicases superfamily B224_3298 SM00490 helicase superfamily c-terminal domain B224_3309 SM01126 B224_3309 B224_3311 SM00226 Low molecular weight phosphatase family B224_3334 SM00448 cheY-homologous receiver domain B224_3334 SM00862 Transcriptional regulatory protein, C terminal B224_3335 SM00387 Histidine kinase-like ATPases B224_3348 SM00481 DNA polymerase alpha chain like domain B224_3352 SM00857 Resolvase, N terminal domain B224_3358 SM01321 B224_3358 B224_3371 SM00363 S4 RNA-binding domain B224_3392 SM00984 UDP binding domain B224_3407 SM00062 Bacterial periplasmic substrate-binding proteins B224_3407 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B224_3408 SM00382 ATPases associated with a variety of cellular activities B224_3432 SM00382 ATPases associated with a variety of cellular activities B224_3456 SM00830 Chorismate mutase type II B224_3465 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_3465 SM01134 B224_3465 B224_3489 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_3504 SM00871 Bacterial transcription activator, effector binding domain B224_3511 SM00363 S4 RNA-binding domain B224_3512 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase B224_3519 SM00487 DEAD-like helicases superfamily B224_3519 SM00490 helicase superfamily c-terminal domain B224_3520 SM00855 Phosphoglycerate mutase family B224_3522 SM00052 Putative diguanylate phosphodiesterase B224_3522 SM00267 diguanylate cyclase B224_3535 SM00563 Phosphate acyltransferases B224_3540 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain B224_3542 SM00867 YceI-like domain B224_3550 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_3550 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_3552 SM00852 Probable molybdopterin binding domain B224_3559 SM00382 ATPases associated with a variety of cellular activities B224_3566 SM00852 Probable molybdopterin binding domain B224_3573 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_3577 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_3579 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_3579 SM00387 Histidine kinase-like ATPases B224_3580 SM00421 helix_turn_helix, Lux Regulon B224_3580 SM00448 cheY-homologous receiver domain B224_3584 SM00387 Histidine kinase-like ATPases B224_3584 SM00388 His Kinase A (phosphoacceptor) domain B224_3584 SM00448 cheY-homologous receiver domain B224_3586 SM00897 FIST N domain B224_3586 SM01204 B224_3586 B224_3595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_3598 SM00479 B224_3598 B224_3602 SM00849 Metallo-beta-lactamase superfamily B224_3603 SM00257 Lysin motif B224_3609 SM00354 helix_turn _helix lactose operon repressor B224_3634 SM00382 ATPases associated with a variety of cellular activities B224_3639 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_3655 SM01081 Putative carbohydrate binding domain B224_3690 SM00890 Domain of unknown function B224_3702 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_3702 SM00876 Biotin and Thiamin Synthesis associated domain B224_3706 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_3723 SM01091 Transporter associated domain B224_3729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_3729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_3748 SM00778 Zinc-binding domain of primase-helicase B224_3755 SM00487 DEAD-like helicases superfamily B224_3772 SM00448 cheY-homologous receiver domain B224_3772 SM00862 Transcriptional regulatory protein, C terminal B224_3775 SM00382 ATPases associated with a variety of cellular activities B224_3778 SM00382 ATPases associated with a variety of cellular activities B224_3787 SM00382 ATPases associated with a variety of cellular activities B224_3809 SM00530 Helix-turn-helix XRE-family like proteins B224_3827 SM00062 Bacterial periplasmic substrate-binding proteins B224_3827 SM00091 PAS domain B224_3827 SM00387 Histidine kinase-like ATPases B224_3827 SM00388 His Kinase A (phosphoacceptor) domain B224_3827 SM00448 cheY-homologous receiver domain B224_3835 SM00091 PAS domain B224_3835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_3835 SM00387 Histidine kinase-like ATPases B224_3835 SM00388 His Kinase A (phosphoacceptor) domain B224_3835 SM00448 cheY-homologous receiver domain B224_3851 SM00382 ATPases associated with a variety of cellular activities B224_3853 SM00710 Parallel beta-helix repeats B224_3853 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses B224_3881 SM00155 Phospholipase D. Active site motifs. B224_3893 SM01321 B224_3893 B224_3898 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_3903 SM00267 diguanylate cyclase B224_3908 SM00530 Helix-turn-helix XRE-family like proteins B224_3909 SM01126 B224_3909 B224_3918 SM00919 Malic enzyme, NAD binding domain B224_3918 SM01274 B224_3918 B224_3919 SM00342 helix_turn_helix, arabinose operon control protein B224_3925 SM00267 diguanylate cyclase B224_3938 SM00382 ATPases associated with a variety of cellular activities B224_3946 SM00062 Bacterial periplasmic substrate-binding proteins B224_3949 SM00382 ATPases associated with a variety of cellular activities B224_3960 SM00091 PAS domain B224_3960 SM00387 Histidine kinase-like ATPases B224_3960 SM00388 His Kinase A (phosphoacceptor) domain B224_3961 SM00448 cheY-homologous receiver domain B224_3961 SM00862 Transcriptional regulatory protein, C terminal B224_3964 SM00267 diguanylate cyclase B224_3966 SM00382 ATPases associated with a variety of cellular activities B224_3970 SM00342 helix_turn_helix, arabinose operon control protein B224_3973 SM00448 cheY-homologous receiver domain B224_3976 SM00387 Histidine kinase-like ATPases B224_3977 SM00919 Malic enzyme, NAD binding domain B224_3977 SM01274 B224_3977 B224_3979 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_3995 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_3995 SM00292 breast cancer carboxy-terminal domain B224_3995 SM00532 Ligase N family B224_3996 SM00771 ZipA, C-terminal domain (FtsZ-binding) B224_4006 SM00062 Bacterial periplasmic substrate-binding proteins B224_4013 SM00642 Alpha-amylase domain B224_4017 SM00421 helix_turn_helix, Lux Regulon B224_4017 SM00448 cheY-homologous receiver domain B224_4025 SM00267 diguanylate cyclase B224_4026 SM00977 TilS substrate C-terminal domain B224_4030 SM00382 ATPases associated with a variety of cellular activities B224_4044 SM00481 DNA polymerase alpha chain like domain B224_4053 SM00935 Outer membrane protein (OmpH-like) B224_4056 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B224_4068 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_4089 SM00028 Tetratricopeptide repeats B224_4092 SM00267 diguanylate cyclase B224_4094 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B224_4094 SM00475 5'-3' exonuclease B224_4096 SM01329 B224_4096 B224_4104 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_4104 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_4116 SM00900 B224_4116 B224_4139 SM01126 B224_4139 B224_4148 SM00421 helix_turn_helix, Lux Regulon B224_4163 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_4165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_4186 SM00422 helix_turn_helix, mercury resistance B224_4194 SM00830 Chorismate mutase type II B224_4209 SM00382 ATPases associated with a variety of cellular activities B224_4224 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_4224 SM01134 B224_4224 B224_4227 SM01007 Class II Aldolase and Adducin N-terminal domain B224_4234 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_4234 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_4241 SM00463 Small MutS-related domain B224_4244 SM00342 helix_turn_helix, arabinose operon control protein B224_4244 SM00478 endonuclease III B224_4244 SM01009 AlkA N-terminal domain B224_4258 SM00052 Putative diguanylate phosphodiesterase B224_4263 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B224_4268 SM00387 Histidine kinase-like ATPases B224_4268 SM00388 His Kinase A (phosphoacceptor) domain B224_4268 SM00421 helix_turn_helix, Lux Regulon B224_4268 SM00448 cheY-homologous receiver domain B224_4279 SM01005 Alanine racemase, C-terminal domain B224_4280 SM00382 ATPases associated with a variety of cellular activities B224_4283 SM00978 B224_4283 B224_4290 SM00382 ATPases associated with a variety of cellular activities B224_4290 SM00448 cheY-homologous receiver domain B224_4292 SM00320 WD40 repeats B224_4298 SM00260 Two component signalling adaptor domain B224_4298 SM00448 cheY-homologous receiver domain B224_4301 SM00267 diguanylate cyclase B224_4310 SM00100 Cyclic nucleotide-monophosphate binding domain B224_4310 SM00419 helix_turn_helix, cAMP Regulatory protein B224_4317 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B224_4317 SM00495 Chitin-binding domain type 3 B224_4317 SM00636 B224_4317 B224_4318 SM00387 Histidine kinase-like ATPases B224_4318 SM00388 His Kinase A (phosphoacceptor) domain B224_4318 SM00448 cheY-homologous receiver domain B224_4338 SM00382 ATPases associated with a variety of cellular activities B224_4341 SM00984 UDP binding domain B224_4346 SM01259 B224_4346 B224_4352 SM00382 ATPases associated with a variety of cellular activities B224_4357 SM00271 DnaJ molecular chaperone homology domain B224_4366 SM00650 Ribosomal RNA adenine dimethylases B224_4369 SM00530 Helix-turn-helix XRE-family like proteins B224_4373 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_4381 SM00244 prohibitin homologues B224_4383 SM00244 prohibitin homologues B224_4389 SM00853 MutL C terminal dimerisation domain B224_4389 SM01340 B224_4389 B224_4391 SM00257 Lysin motif B224_4391 SM00646 B224_4391 B224_4400 SM00382 ATPases associated with a variety of cellular activities B224_4400 SM00930 B224_4400 B224_4407 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B224_4409 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_4409 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_4410 SM00052 Putative diguanylate phosphodiesterase B224_4410 SM00448 cheY-homologous receiver domain B224_4412 SM00062 Bacterial periplasmic substrate-binding proteins B224_4412 SM00073 Histidine Phosphotransfer domain B224_4412 SM00387 Histidine kinase-like ATPases B224_4412 SM00388 His Kinase A (phosphoacceptor) domain B224_4412 SM00448 cheY-homologous receiver domain B224_4417 SM00062 Bacterial periplasmic substrate-binding proteins B224_4423 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_4424 SM00073 Histidine Phosphotransfer domain B224_4424 SM00091 PAS domain B224_4424 SM00387 Histidine kinase-like ATPases B224_4424 SM00388 His Kinase A (phosphoacceptor) domain B224_4424 SM00448 cheY-homologous receiver domain B224_4440 SM01130 B224_4440 B224_4459 SM00014 Acid phosphatase homologues B224_4462 SM00917 LeuA allosteric (dimerisation) domain B224_4464 SM01329 B224_4464 B224_4476 SM00382 ATPases associated with a variety of cellular activities B224_4477 SM00670 Large family of predicted nucleotide-binding domains B224_4482 SM00487 DEAD-like helicases superfamily B224_4482 SM00490 helicase superfamily c-terminal domain B224_4486 SM00052 Putative diguanylate phosphodiesterase B224_4486 SM00267 diguanylate cyclase B224_4490 SM00883 Chaperonin 10 Kd subunit B224_4504 SM00829 Enoylreductase B224_4521 SM00967 RNA 2'-O ribose methyltransferase substrate binding B224_4523 SM00316 Ribosomal protein S1-like RNA-binding domain B224_4523 SM00357 Cold shock protein domain B224_4523 SM00955 B224_4523 B224_4525 SM00267 diguanylate cyclase B224_4529 SM00938 Nitrogen regulatory protein P-II B224_4536 SM00382 ATPases associated with a variety of cellular activities B224_4554 SM00904 Riboflavin kinase B224_4560 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B224_4567 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_4570 SM00927 DNA mismatch repair enzyme MutH B224_4577 SM00382 ATPases associated with a variety of cellular activities B224_4577 SM00962 SRP54-type protein, GTPase domain B224_4577 SM00963 SRP54-type protein, helical bundle domain B224_4580 SM01091 Transporter associated domain B224_4584 SM00671 Sel1-like repeats. B224_4589 SM00062 Bacterial periplasmic substrate-binding proteins B224_4591 SM00382 ATPases associated with a variety of cellular activities B224_4595 SM00382 ATPases associated with a variety of cellular activities B224_4599 SM00938 Nitrogen regulatory protein P-II B224_4620 SM01152 B224_4620 B224_4624 SM00382 ATPases associated with a variety of cellular activities B224_4629 SM00487 DEAD-like helicases superfamily B224_4629 SM00490 helicase superfamily c-terminal domain B224_4643 SM00411 bacterial (prokaryotic) histone like domain B224_4647 SM00382 ATPases associated with a variety of cellular activities B224_4659 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain B224_4661 SM01133 B224_4661 B224_4679 SM00382 ATPases associated with a variety of cellular activities B224_4709 SM01091 Transporter associated domain B224_4716 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B224_4721 SM00382 ATPases associated with a variety of cellular activities B224_4725 SM00533 DNA-binding domain of DNA mismatch repair MUTS family B224_4725 SM00534 ATPase domain of DNA mismatch repair MUTS family B224_4729 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_4742 SM00382 ATPases associated with a variety of cellular activities B224_4746 SM00986 Uracil DNA glycosylase superfamily B224_4746 SM00987 UreE urease accessory protein, C-terminal domain B224_4752 SM00563 Phosphate acyltransferases B224_4760 SM00271 DnaJ molecular chaperone homology domain B224_4777 SM00434 DNA Topoisomerase IV B224_4779 SM00387 Histidine kinase-like ATPases B224_4779 SM00433 TopoisomeraseII B224_4799 SM00421 helix_turn_helix, Lux Regulon B224_4804 SM00357 Cold shock protein domain B224_4804 SM00955 B224_4804 B224_4808 SM00382 ATPases associated with a variety of cellular activities B224_4832 SM00487 DEAD-like helicases superfamily B224_4832 SM00490 helicase superfamily c-terminal domain B224_4847 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B224_4878 SM00642 Alpha-amylase domain B224_4886 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_4886 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_4894 SM00421 helix_turn_helix, Lux Regulon B224_4896 SM00062 Bacterial periplasmic substrate-binding proteins B224_4900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_4900 SM00387 Histidine kinase-like ATPases B224_4900 SM00388 His Kinase A (phosphoacceptor) domain B224_4902 SM00448 cheY-homologous receiver domain B224_4902 SM00862 Transcriptional regulatory protein, C terminal B224_4909 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_4909 SM00091 PAS domain B224_4909 SM00267 diguanylate cyclase B224_4910 SM00938 Nitrogen regulatory protein P-II B224_4913 SM00342 helix_turn_helix, arabinose operon control protein B224_4933 SM00530 Helix-turn-helix XRE-family like proteins B224_4934 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_4934 SM00866 B224_4934 B224_4941 SM00382 ATPases associated with a variety of cellular activities B224_4945 SM00267 diguanylate cyclase B224_4948 SM00342 helix_turn_helix, arabinose operon control protein B224_4948 SM00871 Bacterial transcription activator, effector binding domain B224_4951 SM01060 B224_4951 B224_4959 SM00014 Acid phosphatase homologues B224_4962 SM00822 B224_4962 B224_4964 SM00091 PAS domain B224_4969 SM01120 B224_4969 B224_4975 SM00382 ATPases associated with a variety of cellular activities B224_4984 SM00838 Elongation factor G C-terminus B224_4984 SM00889 Elongation factor G, domain IV B224_4994 SM00663 RNA polymerase I subunit A N-terminus B224_5002 SM00649 Ribosomal protein L11/L12 B224_5003 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B224_5003 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. B224_5017 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B224_5017 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B224_5017 SM00493 B224_5017 B224_5023 SM00387 Histidine kinase-like ATPases B224_5025 SM00448 cheY-homologous receiver domain B224_5025 SM00862 Transcriptional regulatory protein, C terminal B224_5033 SM00382 ATPases associated with a variety of cellular activities B224_5033 SM00448 cheY-homologous receiver domain B224_5037 SM00387 Histidine kinase-like ATPases B224_5037 SM00388 His Kinase A (phosphoacceptor) domain B224_5046 SM00344 helix_turn_helix ASNC type B224_5049 SM00382 ATPases associated with a variety of cellular activities B224_5049 SM01086 C-terminal, D2-small domain, of ClpB protein B224_5051 SM00363 S4 RNA-binding domain B224_5059 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B224_5059 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B224_5063 SM00342 helix_turn_helix, arabinose operon control protein B224_5067 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_5067 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5068 SM01118 B224_5068 B224_5087 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_5087 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5091 SM00382 ATPases associated with a variety of cellular activities B224_5095 SM01038 Beta galactosidase small chain B224_5096 SM00354 helix_turn _helix lactose operon repressor B224_5106 SM00464 Found in ATP-dependent protease La (LON) B224_5107 SM00836 DALR anticodon binding domain B224_5107 SM01016 Arginyl tRNA synthetase N terminal dom B224_5111 SM00382 ATPases associated with a variety of cellular activities B224_5111 SM01086 C-terminal, D2-small domain, of ClpB protein B224_5117 SM00382 ATPases associated with a variety of cellular activities B224_5128 SM00924 MgtE intracellular N domain B224_5138 SM00341 Helicase and RNase D C-terminal B224_5138 SM00487 DEAD-like helicases superfamily B224_5138 SM00490 helicase superfamily c-terminal domain B224_5138 SM00956 B224_5138 B224_5155 SM00382 ATPases associated with a variety of cellular activities B224_5162 SM01230 B224_5162 B224_5175 SM00642 Alpha-amylase domain B224_5183 SM00448 cheY-homologous receiver domain B224_5183 SM00862 Transcriptional regulatory protein, C terminal B224_5185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5185 SM00387 Histidine kinase-like ATPases B224_5185 SM00388 His Kinase A (phosphoacceptor) domain B224_5188 SM00919 Malic enzyme, NAD binding domain B224_5188 SM01274 B224_5188 B224_5192 SM00487 DEAD-like helicases superfamily B224_5192 SM00490 helicase superfamily c-terminal domain B224_5210 SM00382 ATPases associated with a variety of cellular activities B224_5211 SM00563 Phosphate acyltransferases B224_5212 SM00563 Phosphate acyltransferases B224_5219 SM00062 Bacterial periplasmic substrate-binding proteins B224_5220 SM00382 ATPases associated with a variety of cellular activities B224_5230 SM00267 diguanylate cyclase B224_5231 SM00422 helix_turn_helix, mercury resistance B224_5249 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain B224_5249 SM01232 B224_5249 B224_5266 SM00881 CoA binding domain B224_5268 SM00360 RNA recognition motif B224_5272 SM01001 AIR carboxylase B224_5277 SM00448 cheY-homologous receiver domain B224_5277 SM00850 LytTr DNA-binding domain B224_5279 SM00387 Histidine kinase-like ATPases B224_5287 SM00267 diguanylate cyclase B224_5296 SM00267 diguanylate cyclase B224_5300 SM00072 Guanylate kinase homologues. B224_5302 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B224_5302 SM00954 Region found in RelA / SpoT proteins B224_5308 SM00458 Ricin-type beta-trefoil B224_5315 SM00091 PAS domain B224_5315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5315 SM00387 Histidine kinase-like ATPases B224_5318 SM00822 B224_5318 B224_5319 SM00829 Enoylreductase B224_5329 SM00387 Histidine kinase-like ATPases B224_5329 SM00388 His Kinase A (phosphoacceptor) domain B224_5331 SM00448 cheY-homologous receiver domain B224_5331 SM00862 Transcriptional regulatory protein, C terminal B224_5334 SM00342 helix_turn_helix, arabinose operon control protein B224_5343 SM00342 helix_turn_helix, arabinose operon control protein B224_5347 SM00387 Histidine kinase-like ATPases B224_5347 SM00433 TopoisomeraseII B224_5349 SM00480 DNA polymerase III beta subunit B224_5351 SM00382 ATPases associated with a variety of cellular activities B224_5351 SM00760 Bacterial dnaA protein helix-turn-helix domain B224_5352 SM00062 Bacterial periplasmic substrate-binding proteins B224_5354 SM00382 ATPases associated with a variety of cellular activities B224_5361 SM00382 ATPases associated with a variety of cellular activities B224_5363 SM00382 ATPases associated with a variety of cellular activities B224_5370 SM01228 B224_5370 B224_5374 SM00470 ParB-like nuclease domain B224_5384 SM00382 ATPases associated with a variety of cellular activities B224_5392 SM00387 Histidine kinase-like ATPases B224_5392 SM00388 His Kinase A (phosphoacceptor) domain B224_5393 SM00448 cheY-homologous receiver domain B224_5393 SM00862 Transcriptional regulatory protein, C terminal B224_5395 SM00420 helix_turn_helix, Deoxyribose operon repressor B224_5395 SM01134 B224_5395 B224_5399 SM00421 helix_turn_helix, Lux Regulon B224_5410 SM00354 helix_turn _helix lactose operon repressor B224_5413 SM01038 Beta galactosidase small chain B224_5428 SM00829 Enoylreductase B224_5438 SM00382 ATPases associated with a variety of cellular activities B224_5454 SM00342 helix_turn_helix, arabinose operon control protein B224_5458 SM00530 Helix-turn-helix XRE-family like proteins B224_5463 SM00530 Helix-turn-helix XRE-family like proteins B224_5483 SM00257 Lysin motif B224_5496 SM00729 Elongator protein 3, MiaB family, Radical SAM B224_5503 SM00382 ATPases associated with a variety of cellular activities B224_5503 SM00448 cheY-homologous receiver domain B224_5504 SM00091 PAS domain B224_5504 SM00387 Histidine kinase-like ATPases B224_5504 SM00388 His Kinase A (phosphoacceptor) domain B224_5508 SM01230 B224_5508 B224_5522 SM00487 DEAD-like helicases superfamily B224_5522 SM00490 helicase superfamily c-terminal domain B224_5523 SM00155 Phospholipase D. Active site motifs. B224_5529 SM00354 helix_turn _helix lactose operon repressor B224_5534 SM00450 Rhodanese Homology Domain B224_5545 SM00316 Ribosomal protein S1-like RNA-binding domain B224_5545 SM00732 Likely ribonuclease with RNase H fold. B224_5548 SM00448 cheY-homologous receiver domain B224_5548 SM00862 Transcriptional regulatory protein, C terminal B224_5549 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5549 SM00387 Histidine kinase-like ATPases B224_5549 SM00388 His Kinase A (phosphoacceptor) domain B224_5551 SM01403 B224_5551 B224_5555 SM01382 B224_5555 B224_5555 SM01383 B224_5555 B224_5558 SM00322 K homology RNA-binding domain B224_5563 SM01374 B224_5563 B224_5574 SM00363 S4 RNA-binding domain B224_5574 SM01390 B224_5574 B224_5576 SM00662 RNA polymerases D B224_5595 SM01004 Delta-aminolevulinic acid dehydratase B224_5599 SM00052 Putative diguanylate phosphodiesterase B224_5599 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_5599 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_5599 SM00091 PAS domain B224_5599 SM00267 diguanylate cyclase B224_5605 SM00487 DEAD-like helicases superfamily B224_5605 SM00490 helicase superfamily c-terminal domain B224_5607 SM00357 Cold shock protein domain B224_5607 SM00382 ATPases associated with a variety of cellular activities B224_5607 SM00959 Rho termination factor, N-terminal domain B224_5618 SM00450 Rhodanese Homology Domain B224_5622 SM00342 helix_turn_helix, arabinose operon control protein B224_5623 SM00382 ATPases associated with a variety of cellular activities B224_5624 SM00382 ATPases associated with a variety of cellular activities B224_5629 SM00354 helix_turn _helix lactose operon repressor B224_5631 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B224_5631 SM00382 ATPases associated with a variety of cellular activities B224_5633 SM00849 Metallo-beta-lactamase superfamily B224_5650 SM00836 DALR anticodon binding domain B224_5668 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5668 SM00387 Histidine kinase-like ATPases B224_5668 SM00388 His Kinase A (phosphoacceptor) domain B224_5670 SM00448 cheY-homologous receiver domain B224_5670 SM00862 Transcriptional regulatory protein, C terminal B224_5689 SM00052 Putative diguanylate phosphodiesterase B224_5689 SM00267 diguanylate cyclase B224_5691 SM00829 Enoylreductase B224_5706 SM00829 Enoylreductase B224_5715 SM00563 Phosphate acyltransferases B224_5723 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5723 SM00387 Histidine kinase-like ATPases B224_5723 SM00388 His Kinase A (phosphoacceptor) domain B224_5724 SM00448 cheY-homologous receiver domain B224_5724 SM00862 Transcriptional regulatory protein, C terminal B224_5727 SM00971 Serine acetyltransferase, N-terminal B224_5732 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B224_5732 SM00474 3'-5' exonuclease B224_5732 SM00475 5'-3' exonuclease B224_5732 SM00482 DNA polymerase A domain B224_5744 SM00267 diguanylate cyclase B224_5745 SM00487 DEAD-like helicases superfamily B224_5745 SM00490 helicase superfamily c-terminal domain B224_5773 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_5777 SM00028 Tetratricopeptide repeats B224_5777 SM00267 diguanylate cyclase B224_5778 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B224_5778 SM00091 PAS domain B224_5778 SM00267 diguanylate cyclase B224_5781 SM00327 von Willebrand factor (vWF) type A domain B224_5783 SM00382 ATPases associated with a variety of cellular activities B224_5794 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_5808 SM00344 helix_turn_helix ASNC type B224_5813 SM00347 helix_turn_helix multiple antibiotic resistance protein B224_5814 SM00829 Enoylreductase B224_5824 SM00642 Alpha-amylase domain B224_5827 SM00642 Alpha-amylase domain B224_5830 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B224_5849 SM00382 ATPases associated with a variety of cellular activities B224_5851 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B224_5854 SM00822 B224_5854 B224_5864 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_5871 SM00487 DEAD-like helicases superfamily B224_5871 SM00490 helicase superfamily c-terminal domain B224_5884 SM00028 Tetratricopeptide repeats B224_5916 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B224_5916 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B224_5916 SM01049 B224_5916 B224_5924 SM00382 ATPases associated with a variety of cellular activities B224_5932 SM00530 Helix-turn-helix XRE-family like proteins B224_5935 SM00344 helix_turn_helix ASNC type B224_5942 SM00852 Probable molybdopterin binding domain B224_5957 SM01219 B224_5957 B224_5988 SM00267 diguanylate cyclase B224_6001 SM00876 Biotin and Thiamin Synthesis associated domain B224_6016 SM00448 cheY-homologous receiver domain B224_6016 SM00862 Transcriptional regulatory protein, C terminal B224_6017 SM00388 His Kinase A (phosphoacceptor) domain B224_6020 SM01018 B12 binding domain B224_6033 SM00382 ATPases associated with a variety of cellular activities B224_6055 SM00316 Ribosomal protein S1-like RNA-binding domain B224_6063 SM00965 Secretin and TonB N terminus short domain B224_6074 SM00052 Putative diguanylate phosphodiesterase B224_6074 SM00267 diguanylate cyclase B224_6077 SM00052 Putative diguanylate phosphodiesterase B224_6088 SM00345 helix_turn_helix gluconate operon transcriptional repressor B224_6088 SM00866 B224_6088 B224_6089 SM00947 Carbonic anhydrase B224_6092 SM00382 ATPases associated with a variety of cellular activities B224_6094 SM00382 ATPases associated with a variety of cellular activities B224_6094 SM00962 SRP54-type protein, GTPase domain B224_6094 SM00963 SRP54-type protein, helical bundle domain B224_p00019 SM00671 Sel1-like repeats. B224_p00024 SM00671 Sel1-like repeats. B224_p00031 SM00671 Sel1-like repeats.