locus-tag class description CHQ57_00005 PF11638 DnaA N-terminal domain CHQ57_00005 PF08299 Bacterial dnaA protein helix-turn-helix CHQ57_00005 PF00308 Bacterial dnaA protein CHQ57_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CHQ57_00010 PF02767 DNA polymerase III beta subunit, central domain CHQ57_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CHQ57_00015 PF02463 RecF/RecN/SMC N terminal domain CHQ57_00020 PF18053 DNA gyrase B subunit insert domain CHQ57_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00020 PF01751 Toprim domain CHQ57_00020 PF00204 DNA gyrase B CHQ57_00020 PF00986 DNA gyrase B subunit, carboxyl terminus CHQ57_00035 PF08279 HTH domain CHQ57_00035 PF13280 WYL domain CHQ57_00040 PF00011 Hsp20/alpha crystallin family CHQ57_00045 PF00011 Hsp20/alpha crystallin family CHQ57_00050 PF00155 Aminotransferase class I and II CHQ57_00065 PF07690 Major Facilitator Superfamily CHQ57_00070 PF00486 Transcriptional regulatory protein, C terminal CHQ57_00070 PF00072 Response regulator receiver domain CHQ57_00075 PF02702 Osmosensitive K+ channel His kinase sensor domain CHQ57_00075 PF13492 GAF domain CHQ57_00075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00075 PF13493 Domain of unknown function (DUF4118) CHQ57_00075 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_00080 PF02669 K+-transporting ATPase, c chain CHQ57_00090 PF03814 Potassium-transporting ATPase A subunit CHQ57_00100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHQ57_00100 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00105 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_00105 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_00125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_00130 PF00440 Bacterial regulatory proteins, tetR family CHQ57_00165 PF12146 Serine aminopeptidase, S33 CHQ57_00170 PF00588 SpoU rRNA Methylase family CHQ57_00170 PF12105 SpoU, rRNA methylase, C-terminal CHQ57_00175 PF02824 TGS domain CHQ57_00175 PF13291 ACT domain CHQ57_00175 PF04607 Region found in RelA / SpoT proteins CHQ57_00180 PF01192 RNA polymerase Rpb6 CHQ57_00185 PF00625 Guanylate kinase CHQ57_00195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHQ57_00210 PF00892 EamA-like transporter family CHQ57_00230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_00230 PF03466 LysR substrate binding domain CHQ57_00235 PF00579 tRNA synthetases class I (W and Y) CHQ57_00240 PF00582 Universal stress protein family CHQ57_00245 PF12241 Trans-2-enoyl-CoA reductase catalytic region CHQ57_00245 PF07055 Enoyl reductase FAD binding domain CHQ57_00245 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CHQ57_00250 PF08448 PAS fold CHQ57_00250 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_00255 PF00210 Ferritin-like domain CHQ57_00265 PF01810 LysE type translocator CHQ57_00290 PF15976 CS1-pili formation C-terminal CHQ57_00290 PF16967 E-set like domain CHQ57_00295 PF18649 EcpB C-terminal domain CHQ57_00300 PF16449 Fimbrillin MatB CHQ57_00305 PF00072 Response regulator receiver domain CHQ57_00305 PF00196 Bacterial regulatory proteins, luxR family CHQ57_00310 PF00989 PAS fold CHQ57_00310 PF01627 Hpt domain CHQ57_00310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00310 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_00310 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_00310 PF00072 Response regulator receiver domain CHQ57_00320 PF00989 PAS fold CHQ57_00320 PF01627 Hpt domain CHQ57_00320 PF00072 Response regulator receiver domain CHQ57_00320 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_00320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00320 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_00330 PF07694 5TMR of 5TMR-LYT CHQ57_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00330 PF06580 Histidine kinase CHQ57_00335 PF04397 LytTr DNA-binding domain CHQ57_00335 PF00072 Response regulator receiver domain CHQ57_00340 PF07690 Major Facilitator Superfamily CHQ57_00345 PF02222 ATP-grasp domain CHQ57_00345 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CHQ57_00350 PF00731 AIR carboxylase CHQ57_00365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_00365 PF03466 LysR substrate binding domain CHQ57_00370 PF07715 TonB-dependent Receptor Plug Domain CHQ57_00370 PF00593 TonB dependent receptor CHQ57_00375 PF01177 Asp/Glu/Hydantoin racemase CHQ57_00405 PF00583 Acetyltransferase (GNAT) family CHQ57_00405 PF13607 Succinyl-CoA ligase like flavodoxin domain CHQ57_00405 PF13380 CoA binding domain CHQ57_00420 PF03466 LysR substrate binding domain CHQ57_00420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_00425 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CHQ57_00425 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CHQ57_00430 PF00342 Phosphoglucose isomerase CHQ57_00440 PF05552 Conserved TM helix CHQ57_00440 PF00924 Mechanosensitive ion channel CHQ57_00445 PF00440 Bacterial regulatory proteins, tetR family CHQ57_00450 PF00692 dUTPase CHQ57_00455 PF02441 Flavoprotein CHQ57_00455 PF04127 DNA / pantothenate metabolism flavoprotein CHQ57_00460 PF04002 RadC-like JAB domain CHQ57_00465 PF00830 Ribosomal L28 family CHQ57_00470 PF00471 Ribosomal protein L33 CHQ57_00480 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CHQ57_00480 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CHQ57_00480 PF06827 Zinc finger found in FPG and IleRS CHQ57_00485 PF04393 Protein of unknown function (DUF535) CHQ57_00490 PF01467 Cytidylyltransferase-like CHQ57_00495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHQ57_00500 PF00535 Glycosyl transferase family 2 CHQ57_00505 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CHQ57_00510 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CHQ57_00515 PF03611 PTS system sugar-specific permease component CHQ57_00525 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_00530 PF00356 Bacterial regulatory proteins, lacI family CHQ57_00530 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHQ57_00535 PF00107 Zinc-binding dehydrogenase CHQ57_00535 PF08240 Alcohol dehydrogenase GroES-like domain CHQ57_00555 PF03748 Flagellar basal body-associated protein FliL CHQ57_00560 PF04345 Chorismate lyase CHQ57_00565 PF01040 UbiA prenyltransferase family CHQ57_00570 PF01553 Acyltransferase CHQ57_00575 PF01726 LexA DNA binding domain CHQ57_00575 PF00717 Peptidase S24-like CHQ57_00585 PF02630 SCO1/SenC CHQ57_00590 PF01554 MatE CHQ57_00595 PF00588 SpoU rRNA Methylase family CHQ57_00600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_00600 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_00600 PF00672 HAMP domain CHQ57_00600 PF16527 Two-component sensor protein CpxA, periplasmic domain CHQ57_00605 PF00072 Response regulator receiver domain CHQ57_00605 PF00486 Transcriptional regulatory protein, C terminal CHQ57_00610 PF16916 Dimerisation domain of Zinc Transporter CHQ57_00610 PF01545 Cation efflux family CHQ57_00615 PF06426 Serine acetyltransferase, N-terminal CHQ57_00615 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_00625 PF06005 Cell division protein ZapB CHQ57_00640 PF01612 3'-5' exonuclease CHQ57_00640 PF01367 5'-3' exonuclease, C-terminal SAM fold CHQ57_00640 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHQ57_00640 PF00476 DNA polymerase family A CHQ57_00645 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_00680 PF00356 Bacterial regulatory proteins, lacI family CHQ57_00685 PF13593 SBF-like CPA transporter family (DUF4137) CHQ57_00690 PF03781 Sulfatase-modifying factor enzyme 1 CHQ57_00690 PF12867 DinB superfamily CHQ57_00700 PF00756 Putative esterase CHQ57_00705 PF08240 Alcohol dehydrogenase GroES-like domain CHQ57_00705 PF00107 Zinc-binding dehydrogenase CHQ57_00710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_00710 PF03466 LysR substrate binding domain CHQ57_00735 PF00580 UvrD/REP helicase N-terminal domain CHQ57_00735 PF13361 UvrD-like helicase C-terminal domain CHQ57_00765 PF14001 YdfZ protein CHQ57_00790 PF04972 BON domain CHQ57_00815 PF04143 Sulphur transport CHQ57_00820 PF00690 Cation transporter/ATPase, N-terminus CHQ57_00820 PF00689 Cation transporting ATPase, C-terminus CHQ57_00825 PF01810 LysE type translocator CHQ57_00830 PF12833 Helix-turn-helix domain CHQ57_00835 PF00892 EamA-like transporter family CHQ57_00845 PF00171 Aldehyde dehydrogenase family CHQ57_00850 PF01381 Helix-turn-helix CHQ57_00855 PF00202 Aminotransferase class-III CHQ57_00860 PF00171 Aldehyde dehydrogenase family CHQ57_00865 PF00958 GMP synthase C terminal domain CHQ57_00865 PF00117 Glutamine amidotransferase class-I CHQ57_00865 PF02540 NAD synthase CHQ57_00870 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CHQ57_00870 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CHQ57_00875 PF00294 pfkB family carbohydrate kinase CHQ57_00880 PF02082 Transcriptional regulator CHQ57_00895 PF02646 RmuC family CHQ57_00900 PF02386 Cation transport protein CHQ57_00905 PF02254 TrkA-N domain CHQ57_00905 PF02080 TrkA-C domain CHQ57_00910 PF01189 16S rRNA methyltransferase RsmB/F CHQ57_00910 PF01029 NusB family CHQ57_00915 PF00551 Formyl transferase CHQ57_00915 PF02911 Formyl transferase, C-terminal domain CHQ57_00920 PF01327 Polypeptide deformylase CHQ57_00925 PF01476 LysM domain CHQ57_00930 PF17782 DprA winged helix domain CHQ57_00930 PF02481 DNA recombination-mediator protein A CHQ57_00935 PF04361 Protein of unknown function (DUF494) CHQ57_00940 PF01396 Topoisomerase DNA binding C4 zinc finger CHQ57_00945 PF00731 AIR carboxylase CHQ57_00950 PF01300 Telomere recombination CHQ57_00955 PF01218 Coproporphyrinogen III oxidase CHQ57_00960 PF08501 Shikimate dehydrogenase substrate binding domain CHQ57_00960 PF01488 Shikimate / quinate 5-dehydrogenase CHQ57_00960 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CHQ57_00965 PF07369 Protein of unknown function (DUF1488) CHQ57_00970 PF01926 50S ribosome-binding GTPase CHQ57_00975 PF00034 Cytochrome c CHQ57_00980 PF04220 Der GTPase activator (YihI) CHQ57_00985 PF10675 Protein of unknown function (DUF2489) CHQ57_00990 PF04055 Radical SAM superfamily CHQ57_00990 PF06969 HemN C-terminal domain CHQ57_00995 PF00962 Adenosine/AMP deaminase CHQ57_01000 PF02954 Bacterial regulatory protein, Fis family CHQ57_01000 PF00072 Response regulator receiver domain CHQ57_01000 PF00158 Sigma-54 interaction domain CHQ57_01005 PF00989 PAS fold CHQ57_01005 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_01005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_01015 PF00120 Glutamine synthetase, catalytic domain CHQ57_01015 PF03951 Glutamine synthetase, beta-Grasp domain CHQ57_01025 PF03631 Virulence factor BrkB CHQ57_01030 PF02580 D-Tyr-tRNA(Tyr) deacylase CHQ57_01040 PF00583 Acetyltransferase (GNAT) family CHQ57_01040 PF09500 Putative thioesterase (yiiD_Cterm) CHQ57_01050 PF17191 RecG wedge domain CHQ57_01050 PF00270 DEAD/DEAH box helicase CHQ57_01050 PF00271 Helicase conserved C-terminal domain CHQ57_01055 PF13091 PLD-like domain CHQ57_01060 PF02447 GntP family permease CHQ57_01065 PF01202 Shikimate kinase CHQ57_01070 PF00920 Dehydratase family CHQ57_01075 PF01081 KDPG and KHG aldolase CHQ57_01090 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHQ57_01090 PF00356 Bacterial regulatory proteins, lacI family CHQ57_01100 PF01551 Peptidase family M23 CHQ57_01105 PF01676 Metalloenzyme superfamily CHQ57_01105 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CHQ57_01110 PF00581 Rhodanese-like domain CHQ57_01115 PF02556 Preprotein translocase subunit SecB CHQ57_01120 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CHQ57_01120 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CHQ57_01125 PF01521 Iron-sulphur cluster biosynthesis CHQ57_01125 PF01106 NifU-like domain CHQ57_01130 PF00156 Phosphoribosyl transferase domain CHQ57_01135 PF00561 alpha/beta hydrolase fold CHQ57_01160 PF09371 Tex-like protein N-terminal domain CHQ57_01160 PF17674 HHH domain CHQ57_01160 PF16921 Tex protein YqgF-like domain CHQ57_01160 PF00575 S1 RNA binding domain CHQ57_01165 PF03449 Transcription elongation factor, N-terminal CHQ57_01165 PF01272 Transcription elongation factor, GreA/GreB, C-term CHQ57_01170 PF00072 Response regulator receiver domain CHQ57_01170 PF00486 Transcriptional regulatory protein, C terminal CHQ57_01175 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_01175 PF00672 HAMP domain CHQ57_01185 PF00338 Ribosomal protein S10p/S20e CHQ57_01190 PF00297 Ribosomal protein L3 CHQ57_01195 PF00573 Ribosomal protein L4/L1 family CHQ57_01200 PF00276 Ribosomal protein L23 CHQ57_01205 PF03947 Ribosomal Proteins L2, C-terminal domain CHQ57_01205 PF00181 Ribosomal Proteins L2, RNA binding domain CHQ57_01210 PF00203 Ribosomal protein S19 CHQ57_01215 PF00237 Ribosomal protein L22p/L17e CHQ57_01220 PF07650 KH domain CHQ57_01220 PF00189 Ribosomal protein S3, C-terminal domain CHQ57_01225 PF00252 Ribosomal protein L16p/L10e CHQ57_01230 PF00831 Ribosomal L29 protein CHQ57_01235 PF00366 Ribosomal protein S17 CHQ57_01240 PF00238 Ribosomal protein L14p/L23e CHQ57_01245 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CHQ57_01250 PF00281 Ribosomal protein L5 CHQ57_01250 PF00673 ribosomal L5P family C-terminus CHQ57_01255 PF00253 Ribosomal protein S14p/S29e CHQ57_01260 PF00410 Ribosomal protein S8 CHQ57_01265 PF00347 Ribosomal protein L6 CHQ57_01270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CHQ57_01275 PF00333 Ribosomal protein S5, N-terminal domain CHQ57_01275 PF03719 Ribosomal protein S5, C-terminal domain CHQ57_01280 PF00327 Ribosomal protein L30p/L7e CHQ57_01285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CHQ57_01290 PF00344 SecY translocase CHQ57_01295 PF00444 Ribosomal protein L36 CHQ57_01300 PF00416 Ribosomal protein S13/S18 CHQ57_01305 PF00411 Ribosomal protein S11 CHQ57_01310 PF00163 Ribosomal protein S4/S9 N-terminal domain CHQ57_01310 PF01479 S4 domain CHQ57_01315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CHQ57_01315 PF01000 RNA polymerase Rpb3/RpoA insert domain CHQ57_01315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CHQ57_01320 PF01196 Ribosomal protein L17 CHQ57_01375 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_01385 PF00005 ABC transporter CHQ57_01385 PF08402 TOBE domain CHQ57_01395 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_01410 PF07702 UTRA domain CHQ57_01410 PF00392 Bacterial regulatory proteins, gntR family CHQ57_01420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_01420 PF03466 LysR substrate binding domain CHQ57_01430 PF02678 Pirin CHQ57_01430 PF17954 Quercetinase C-terminal cupin domain CHQ57_01435 PF07681 DoxX CHQ57_01440 PF17946 RecC C-terminal domain CHQ57_01445 PF12705 PD-(D/E)XK nuclease superfamily CHQ57_01445 PF00580 UvrD/REP helicase N-terminal domain CHQ57_01445 PF13361 UvrD-like helicase C-terminal domain CHQ57_01450 PF13538 UvrD-like helicase C-terminal domain CHQ57_01470 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_01485 PF00909 Ammonium Transporter Family CHQ57_01490 PF00543 Nitrogen regulatory protein P-II CHQ57_01495 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_01495 PF00072 Response regulator receiver domain CHQ57_01505 PF02743 Cache domain CHQ57_01505 PF00672 HAMP domain CHQ57_01505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_01525 PF00072 Response regulator receiver domain CHQ57_01525 PF00486 Transcriptional regulatory protein, C terminal CHQ57_01535 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_01540 PF07715 TonB-dependent Receptor Plug Domain CHQ57_01540 PF00593 TonB dependent receptor CHQ57_01545 PF00313 'Cold-shock' DNA-binding domain CHQ57_01555 PF16916 Dimerisation domain of Zinc Transporter CHQ57_01555 PF01545 Cation efflux family CHQ57_01570 PF00436 Single-strand binding protein family CHQ57_01575 PF00196 Bacterial regulatory proteins, luxR family CHQ57_01580 PF00005 ABC transporter CHQ57_01580 PF17755 UvrA DNA-binding domain CHQ57_01580 PF17760 UvrA interaction domain CHQ57_01585 PF17151 Periplasmic sensor domain CHQ57_01585 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_01595 PF13737 Transposase DDE domain CHQ57_01605 PF12729 Four helix bundle sensory module for signal transduction CHQ57_01605 PF00672 HAMP domain CHQ57_01605 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_01620 PF02219 Methylenetetrahydrofolate reductase CHQ57_01635 PF03594 Benzoate membrane transport protein CHQ57_01640 PF01381 Helix-turn-helix CHQ57_01640 PF07883 Cupin domain CHQ57_01680 PF00860 Permease family CHQ57_01685 PF02733 Dak1 domain CHQ57_01690 PF02734 DAK2 domain CHQ57_01695 PF00381 PTS HPr component phosphorylation site CHQ57_01695 PF05524 PEP-utilising enzyme, N-terminal CHQ57_01695 PF00391 PEP-utilising enzyme, mobile domain CHQ57_01695 PF03610 PTS system fructose IIA component CHQ57_01700 PF00465 Iron-containing alcohol dehydrogenase CHQ57_01705 PF00158 Sigma-54 interaction domain CHQ57_01705 PF00989 PAS fold CHQ57_01705 PF02954 Bacterial regulatory protein, Fis family CHQ57_01715 PF01594 AI-2E family transporter CHQ57_01720 PF01569 PAP2 superfamily CHQ57_01745 PF06628 Catalase-related immune-responsive CHQ57_01745 PF00199 Catalase CHQ57_01750 PF00583 Acetyltransferase (GNAT) family CHQ57_01765 PF02371 Transposase IS116/IS110/IS902 family CHQ57_01765 PF01548 Transposase CHQ57_01775 PF00440 Bacterial regulatory proteins, tetR family CHQ57_01795 PF00448 SRP54-type protein, GTPase domain CHQ57_01795 PF02881 SRP54-type protein, helical bundle domain CHQ57_01800 PF00005 ABC transporter CHQ57_01805 PF18075 FtsX extracellular domain CHQ57_01810 PF04545 Sigma-70, region 4 CHQ57_01810 PF04542 Sigma-70 region 2 CHQ57_01810 PF00140 Sigma-70 factor, region 1.2 CHQ57_01815 PF00484 Carbonic anhydrase CHQ57_01820 PF00392 Bacterial regulatory proteins, gntR family CHQ57_01820 PF07702 UTRA domain CHQ57_01825 PF01979 Amidohydrolase family CHQ57_01830 PF00491 Arginase family CHQ57_01835 PF01175 Urocanase Rossmann-like domain CHQ57_01835 PF17391 Urocanase N-terminal domain CHQ57_01835 PF17392 Urocanase C-terminal domain CHQ57_01840 PF00221 Aromatic amino acid lyase CHQ57_01845 PF01699 Sodium/calcium exchanger protein CHQ57_01855 PF00563 EAL domain CHQ57_01855 PF17157 Gammaproteobacterial periplasmic sensor domain CHQ57_01855 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_01885 PF00263 Bacterial type II and III secretion system protein CHQ57_01885 PF03958 Bacterial type II/III secretion system short domain CHQ57_01900 PF00437 Type II/IV secretion system protein CHQ57_01900 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHQ57_01905 PF00482 Type II secretion system (T2SS), protein F CHQ57_01925 PF14245 Type IV pilin PilA CHQ57_01925 PF07963 Prokaryotic N-terminal methylation motif CHQ57_01955 PF04085 rod shape-determining protein MreC CHQ57_01960 PF04093 rod shape-determining protein MreD CHQ57_01965 PF02545 Maf-like protein CHQ57_01970 PF10150 Ribonuclease E/G family CHQ57_01970 PF00575 S1 RNA binding domain CHQ57_01975 PF13502 AsmA-like C-terminal region CHQ57_01975 PF13116 Protein of unknown function CHQ57_01985 PF00795 Carbon-nitrogen hydrolase CHQ57_01990 PF01523 Putative modulator of DNA gyrase CHQ57_02000 PF01914 MarC family integral membrane protein CHQ57_02005 PF07690 Major Facilitator Superfamily CHQ57_02015 PF00072 Response regulator receiver domain CHQ57_02020 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHQ57_02020 PF01627 Hpt domain CHQ57_02020 PF00072 Response regulator receiver domain CHQ57_02020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_02020 PF00672 HAMP domain CHQ57_02020 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_02025 PF13581 Histidine kinase-like ATPase domain CHQ57_02030 PF01740 STAS domain CHQ57_02030 PF08678 Rsbr N terminal CHQ57_02035 PF13426 PAS domain CHQ57_02035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_02035 PF08447 PAS fold CHQ57_02040 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CHQ57_02050 PF08668 HDOD domain CHQ57_02065 PF00999 Sodium/hydrogen exchanger family CHQ57_02070 PF02607 B12 binding domain CHQ57_02070 PF02574 Homocysteine S-methyltransferase CHQ57_02070 PF00809 Pterin binding enzyme CHQ57_02070 PF02310 B12 binding domain CHQ57_02070 PF02965 Vitamin B12 dependent methionine synthase, activation domain CHQ57_02075 PF08443 RimK-like ATP-grasp domain CHQ57_02075 PF18030 RimK PreATP-grasp domain CHQ57_02085 PF00486 Transcriptional regulatory protein, C terminal CHQ57_02085 PF00072 Response regulator receiver domain CHQ57_02100 PF03440 Aerolysin/Pertussis toxin (APT) domain CHQ57_02100 PF01117 Aerolysin toxin CHQ57_02105 PF01964 Radical SAM ThiC family CHQ57_02105 PF13667 ThiC-associated domain CHQ57_02110 PF02581 Thiamine monophosphate synthase CHQ57_02115 PF00899 ThiF family CHQ57_02125 PF05690 Thiazole biosynthesis protein ThiG CHQ57_02130 PF04055 Radical SAM superfamily CHQ57_02130 PF06968 Biotin and Thiamin Synthesis associated domain CHQ57_02155 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_02160 PF13036 Peptidoglycan-synthase activator LpoB CHQ57_02180 PF06055 Exopolysaccharide synthesis, ExoD CHQ57_02190 PF08803 Putative mono-oxygenase ydhR CHQ57_02195 PF01638 HxlR-like helix-turn-helix CHQ57_02220 PF07715 TonB-dependent Receptor Plug Domain CHQ57_02220 PF00593 TonB dependent receptor CHQ57_02235 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CHQ57_02250 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CHQ57_02255 PF02602 Uroporphyrinogen-III synthase HemD CHQ57_02260 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CHQ57_02260 PF03900 Porphobilinogen deaminase, C-terminal domain CHQ57_02265 PF12633 Adenylate cyclase NT domain CHQ57_02265 PF01295 Adenylate cyclase, class-I CHQ57_02270 PF02230 Phospholipase/Carboxylesterase CHQ57_02275 PF01491 Frataxin-like domain CHQ57_02280 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHQ57_02280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHQ57_02285 PF01678 Diaminopimelate epimerase CHQ57_02295 PF02899 Phage integrase, N-terminal SAM-like domain CHQ57_02295 PF00589 Phage integrase family CHQ57_02300 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_02310 PF00924 Mechanosensitive ion channel CHQ57_02320 PF07722 Peptidase C26 CHQ57_02340 PF00005 ABC transporter CHQ57_02350 PF02464 Competence-damaged protein CHQ57_02350 PF00994 Probable molybdopterin binding domain CHQ57_02360 PF04204 Homoserine O-succinyltransferase CHQ57_02370 PF01037 Lrp/AsnC ligand binding domain CHQ57_02375 PF00884 Sulfatase CHQ57_02390 PF00128 Alpha amylase, catalytic domain CHQ57_02390 PF16657 Maltogenic Amylase, C-terminal domain CHQ57_02390 PF02903 Alpha amylase, N-terminal ig-like domain CHQ57_02395 PF02308 MgtC family CHQ57_02415 PF00106 short chain dehydrogenase CHQ57_02420 PF03577 Peptidase family C69 CHQ57_02430 PF02321 Outer membrane efflux protein CHQ57_02435 PF00293 NUDIX domain CHQ57_02440 PF06853 Protein of unknown function (DUF1249) CHQ57_02445 PF00149 Calcineurin-like phosphoesterase CHQ57_02450 PF05728 Uncharacterised protein family (UPF0227) CHQ57_02455 PF00293 NUDIX domain CHQ57_02465 PF00204 DNA gyrase B CHQ57_02465 PF01751 Toprim domain CHQ57_02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_02465 PF00986 DNA gyrase B subunit, carboxyl terminus CHQ57_02470 PF03989 DNA gyrase C-terminal domain, beta-propeller CHQ57_02470 PF00521 DNA gyrase/topoisomerase IV, subunit A CHQ57_02510 PF01556 DnaJ C terminal domain CHQ57_02510 PF00226 DnaJ domain CHQ57_02510 PF00684 DnaJ central domain CHQ57_02515 PF07681 DoxX CHQ57_02520 PF00085 Thioredoxin CHQ57_02540 PF01553 Acyltransferase CHQ57_02545 PF04012 PspA/IM30 family CHQ57_02570 PF00892 EamA-like transporter family CHQ57_02575 PF03167 Uracil DNA glycosylase superfamily CHQ57_02585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_02585 PF03466 LysR substrate binding domain CHQ57_02590 PF00950 ABC 3 transport family CHQ57_02595 PF00005 ABC transporter CHQ57_02600 PF01297 Zinc-uptake complex component A periplasmic CHQ57_02620 PF08525 Opacity-associated protein A N-terminal motif CHQ57_02620 PF01551 Peptidase family M23 CHQ57_02620 PF01476 LysM domain CHQ57_02630 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_02635 PF04222 Protein of unknown function (DUF416) CHQ57_02650 PF02028 BCCT, betaine/carnitine/choline family transporter CHQ57_02655 PF00488 MutS domain V CHQ57_02655 PF05190 MutS family domain IV CHQ57_02655 PF01624 MutS domain I CHQ57_02655 PF05188 MutS domain II CHQ57_02655 PF05192 MutS domain III CHQ57_02660 PF01022 Bacterial regulatory protein, arsR family CHQ57_02665 PF06953 Arsenical resistance operon trans-acting repressor ArsD CHQ57_02670 PF02374 Anion-transporting ATPase CHQ57_02675 PF01758 Sodium Bile acid symporter family CHQ57_02680 PF03960 ArsC family CHQ57_02700 PF00311 Phosphoenolpyruvate carboxylase CHQ57_02705 PF01546 Peptidase family M20/M25/M40 CHQ57_02705 PF07687 Peptidase dimerisation domain CHQ57_02710 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHQ57_02710 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHQ57_02715 PF00696 Amino acid kinase family CHQ57_02720 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHQ57_02720 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHQ57_02725 PF00764 Arginosuccinate synthase CHQ57_02730 PF00206 Lyase CHQ57_02730 PF14698 Argininosuccinate lyase C-terminal CHQ57_02735 PF03466 LysR substrate binding domain CHQ57_02735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_02745 PF14552 Tautomerase enzyme CHQ57_02775 PF14602 Hexapeptide repeat of succinyl-transferase CHQ57_02775 PF12464 Maltose acetyltransferase CHQ57_02780 PF13194 Domain of unknown function (DUF4010) CHQ57_02795 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_02800 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_02805 PF00005 ABC transporter CHQ57_02805 PF12857 TOBE-like domain CHQ57_02810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_02810 PF03466 LysR substrate binding domain CHQ57_02815 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_02820 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_02825 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_02830 PF00005 ABC transporter CHQ57_02835 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_02845 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CHQ57_02845 PF18416 N-acetylglucosamine binding protein domain 2 CHQ57_02850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_02850 PF00672 HAMP domain CHQ57_02850 PF17200 Single Cache domain 2 CHQ57_02870 PF14883 Hypothetical glycosyl hydrolase family 13 CHQ57_02870 PF01522 Polysaccharide deacetylase CHQ57_02875 PF00535 Glycosyl transferase family 2 CHQ57_02890 PF14685 Tricorn protease PDZ domain CHQ57_02890 PF03572 Peptidase family S41 CHQ57_02890 PF07676 WD40-like Beta Propeller Repeat CHQ57_02890 PF14684 Tricorn protease C1 domain CHQ57_02910 PF11230 Protein of unknown function (DUF3029) CHQ57_02915 PF04055 Radical SAM superfamily CHQ57_02925 PF03466 LysR substrate binding domain CHQ57_02925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_02930 PF00155 Aminotransferase class I and II CHQ57_02935 PF02583 Metal-sensitive transcriptional repressor CHQ57_02950 PF11852 Domain of unknown function (DUF3372) CHQ57_02950 PF18494 Pullulanase Ins domain CHQ57_02950 PF03714 Bacterial pullanase-associated domain CHQ57_02950 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHQ57_02950 PF17967 Pullulanase N2 domain CHQ57_02955 PF00403 Heavy-metal-associated domain CHQ57_02960 PF08534 Redoxin CHQ57_02970 PF00270 DEAD/DEAH box helicase CHQ57_02970 PF00271 Helicase conserved C-terminal domain CHQ57_02985 PF03372 Endonuclease/Exonuclease/phosphatase family CHQ57_02990 PF08447 PAS fold CHQ57_02990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_03005 PF06062 Uncharacterised protein family (UPF0231) CHQ57_03010 PF05651 Putative sugar diacid recognition CHQ57_03010 PF13556 PucR C-terminal helix-turn-helix domain CHQ57_03010 PF17853 GGDEF-like domain CHQ57_03015 PF02447 GntP family permease CHQ57_03020 PF02595 Glycerate kinase family CHQ57_03030 PF00255 Glutathione peroxidase CHQ57_03035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_03035 PF03466 LysR substrate binding domain CHQ57_03040 PF07662 Na+ dependent nucleoside transporter C-terminus CHQ57_03040 PF07670 Nucleoside recognition CHQ57_03040 PF01773 Na+ dependent nucleoside transporter N-terminus CHQ57_03045 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHQ57_03045 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHQ57_03050 PF00472 RF-1 domain CHQ57_03055 PF00543 Nitrogen regulatory protein P-II CHQ57_03065 PF13416 Bacterial extracellular solute-binding protein CHQ57_03075 PF00005 ABC transporter CHQ57_03075 PF08402 TOBE domain CHQ57_03080 PF04261 Dyp-type peroxidase family CHQ57_03085 PF02863 Arginine repressor, C-terminal domain CHQ57_03085 PF01316 Arginine repressor, DNA binding domain CHQ57_03090 PF00005 ABC transporter CHQ57_03095 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_03100 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_03105 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_03110 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CHQ57_03110 PF00056 lactate/malate dehydrogenase, NAD binding domain CHQ57_03115 PF08238 Sel1 repeat CHQ57_03120 PF00042 Globin CHQ57_03120 PF00175 Oxidoreductase NAD-binding domain CHQ57_03120 PF00970 Oxidoreductase FAD-binding domain CHQ57_03125 PF02082 Transcriptional regulator CHQ57_03130 PF01595 Cyclin M transmembrane N-terminal domain CHQ57_03130 PF00571 CBS domain CHQ57_03130 PF03471 Transporter associated domain CHQ57_03135 PF01578 Cytochrome C assembly protein CHQ57_03140 PF02881 SRP54-type protein, helical bundle domain CHQ57_03140 PF02978 Signal peptide binding domain CHQ57_03140 PF00448 SRP54-type protein, GTPase domain CHQ57_03145 PF00886 Ribosomal protein S16 CHQ57_03150 PF01782 RimM N-terminal domain CHQ57_03150 PF05239 PRC-barrel domain CHQ57_03155 PF01746 tRNA (Guanine-1)-methyltransferase CHQ57_03160 PF01245 Ribosomal protein L19 CHQ57_03170 PF02976 DNA mismatch repair enzyme MutH CHQ57_03175 PF00293 NUDIX domain CHQ57_03185 PF01790 Prolipoprotein diacylglyceryl transferase CHQ57_03190 PF00303 Thymidylate synthase CHQ57_03195 PF06965 Na+/H+ antiporter 1 CHQ57_03205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_03205 PF03466 LysR substrate binding domain CHQ57_03210 PF01022 Bacterial regulatory protein, arsR family CHQ57_03215 PF01649 Ribosomal protein S20 CHQ57_03225 PF01687 Riboflavin kinase CHQ57_03225 PF06574 FAD synthetase CHQ57_03230 PF06827 Zinc finger found in FPG and IleRS CHQ57_03230 PF08264 Anticodon-binding domain of tRNA CHQ57_03230 PF00133 tRNA synthetases class I (I, L, M and V) CHQ57_03235 PF01252 Signal peptidase (SPase) II CHQ57_03240 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_03245 PF02401 LytB protein CHQ57_03260 PF12833 Helix-turn-helix domain CHQ57_03265 PF14245 Type IV pilin PilA CHQ57_03265 PF07963 Prokaryotic N-terminal methylation motif CHQ57_03285 PF05567 Neisseria PilC beta-propeller domain CHQ57_03300 PF02540 NAD synthase CHQ57_03300 PF00795 Carbon-nitrogen hydrolase CHQ57_03305 PF00543 Nitrogen regulatory protein P-II CHQ57_03315 PF02664 S-Ribosylhomocysteinase (LuxS) CHQ57_03320 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_03325 PF08461 Ribonuclease R winged-helix domain CHQ57_03325 PF08206 Ribonuclease B OB domain CHQ57_03325 PF17876 Cold shock domain CHQ57_03325 PF00773 RNB domain CHQ57_03325 PF00575 S1 RNA binding domain CHQ57_03330 PF08032 RNA 2'-O ribose methyltransferase substrate binding CHQ57_03330 PF00588 SpoU rRNA Methylase family CHQ57_03340 PF13673 Acetyltransferase (GNAT) domain CHQ57_03355 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHQ57_03355 PF01411 tRNA synthetases class II (A) CHQ57_03355 PF02272 DHHA1 domain CHQ57_03360 PF01566 Natural resistance-associated macrophage protein CHQ57_03365 PF01250 Ribosomal protein S6 CHQ57_03370 PF01084 Ribosomal protein S18 CHQ57_03375 PF03948 Ribosomal protein L9, C-terminal domain CHQ57_03375 PF01281 Ribosomal protein L9, N-terminal domain CHQ57_03380 PF00175 Oxidoreductase NAD-binding domain CHQ57_03380 PF00970 Oxidoreductase FAD-binding domain CHQ57_03405 PF08240 Alcohol dehydrogenase GroES-like domain CHQ57_03405 PF00107 Zinc-binding dehydrogenase CHQ57_03410 PF09335 SNARE associated Golgi protein CHQ57_03415 PF00675 Insulinase (Peptidase family M16) CHQ57_03415 PF05193 Peptidase M16 inactive domain CHQ57_03420 PF04262 Glutamate-cysteine ligase CHQ57_03430 PF00501 AMP-binding enzyme CHQ57_03440 PF00583 Acetyltransferase (GNAT) family CHQ57_03440 PF13673 Acetyltransferase (GNAT) domain CHQ57_03450 PF12592 Protein of unknown function (DUF3763) CHQ57_03450 PF07728 AAA domain (dynein-related subfamily) CHQ57_03450 PF17868 AAA lid domain CHQ57_03455 PF05762 VWA domain containing CoxE-like protein CHQ57_03465 PF01037 Lrp/AsnC ligand binding domain CHQ57_03470 PF13188 PAS domain CHQ57_03470 PF03707 Bacterial signalling protein N terminal repeat CHQ57_03470 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_03470 PF00563 EAL domain CHQ57_03475 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_03475 PF00072 Response regulator receiver domain CHQ57_03480 PF03144 Elongation factor Tu domain 2 CHQ57_03480 PF16658 Class II release factor RF3, C-terminal domain CHQ57_03480 PF00009 Elongation factor Tu GTP binding domain CHQ57_03490 PF00583 Acetyltransferase (GNAT) family CHQ57_03495 PF00583 Acetyltransferase (GNAT) family CHQ57_03500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHQ57_03510 PF04073 Aminoacyl-tRNA editing domain CHQ57_03510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHQ57_03510 PF03129 Anticodon binding domain CHQ57_03515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_03515 PF00672 HAMP domain CHQ57_03520 PF07499 RuvA, C-terminal domain CHQ57_03520 PF01330 RuvA N terminal domain CHQ57_03525 PF17864 RuvB AAA lid domain CHQ57_03525 PF05496 Holliday junction DNA helicase RuvB P-loop domain CHQ57_03525 PF05491 RuvB C-terminal winged helix domain CHQ57_03535 PF01654 Cytochrome bd terminal oxidase subunit I CHQ57_03540 PF02322 Cytochrome bd terminal oxidase subunit II CHQ57_03545 PF08173 Membrane bound YbgT-like protein CHQ57_03550 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CHQ57_03555 PF03061 Thioesterase superfamily CHQ57_03560 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_03565 PF02472 Biopolymer transport protein ExbD/TolR CHQ57_03575 PF07676 WD40-like Beta Propeller Repeat CHQ57_03575 PF04052 TolB amino-terminal domain CHQ57_03580 PF00691 OmpA family CHQ57_03585 PF13174 Tetratricopeptide repeat CHQ57_03585 PF16331 TolA binding protein trimerisation CHQ57_03660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_03660 PF00672 HAMP domain CHQ57_03665 PF02445 Quinolinate synthetase A protein CHQ57_03670 PF01263 Aldose 1-epimerase CHQ57_03675 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHQ57_03675 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHQ57_03680 PF02446 4-alpha-glucanotransferase CHQ57_03685 PF00128 Alpha amylase, catalytic domain CHQ57_03685 PF02806 Alpha amylase, C-terminal all-beta domain CHQ57_03685 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHQ57_03690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHQ57_03690 PF00128 Alpha amylase, catalytic domain CHQ57_03695 PF01641 SelR domain CHQ57_03705 PF00027 Cyclic nucleotide-binding domain CHQ57_03705 PF07885 Ion channel CHQ57_03710 PF08239 Bacterial SH3 domain CHQ57_03715 PF00171 Aldehyde dehydrogenase family CHQ57_03715 PF01619 Proline dehydrogenase CHQ57_03715 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CHQ57_03715 PF14850 DNA-binding domain of Proline dehydrogenase CHQ57_03720 PF09297 NADH pyrophosphatase zinc ribbon domain CHQ57_03720 PF00293 NUDIX domain CHQ57_03725 PF01208 Uroporphyrinogen decarboxylase (URO-D) CHQ57_03730 PF00719 Inorganic pyrophosphatase CHQ57_03735 PF02875 Mur ligase family, glutamate ligase domain CHQ57_03735 PF01225 Mur ligase family, catalytic domain CHQ57_03735 PF08245 Mur ligase middle domain CHQ57_03740 PF02441 Flavoprotein CHQ57_03745 PF00440 Bacterial regulatory proteins, tetR family CHQ57_03750 PF00156 Phosphoribosyl transferase domain CHQ57_03755 PF00005 ABC transporter CHQ57_03760 PF01061 ABC-2 type transporter CHQ57_03770 PF02569 Pantoate-beta-alanine ligase CHQ57_03775 PF02548 Ketopantoate hydroxymethyltransferase CHQ57_03780 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CHQ57_03785 PF12627 Probable RNA and SrmB- binding site of polymerase A CHQ57_03785 PF01743 Poly A polymerase head domain CHQ57_03785 PF12626 Polymerase A arginine-rich C-terminus CHQ57_03790 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHQ57_03795 PF01258 Prokaryotic dksA/traR C4-type zinc finger CHQ57_03800 PF17746 SfsA N-terminal OB domain CHQ57_03800 PF03749 Sugar fermentation stimulation protein RE domain CHQ57_03810 PF08482 ATP-dependent helicase C-terminal CHQ57_03810 PF00271 Helicase conserved C-terminal domain CHQ57_03810 PF04408 Helicase associated domain (HA2) CHQ57_03810 PF00270 DEAD/DEAH box helicase CHQ57_03820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_03825 PF00893 Small Multidrug Resistance protein CHQ57_03830 PF00893 Small Multidrug Resistance protein CHQ57_03835 PF03466 LysR substrate binding domain CHQ57_03835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_03840 PF11849 Domain of unknown function (DUF3369) CHQ57_03850 PF01569 PAP2 superfamily CHQ57_03865 PF00202 Aminotransferase class-III CHQ57_03870 PF00654 Voltage gated chloride channel CHQ57_03880 PF01521 Iron-sulphur cluster biosynthesis CHQ57_03915 PF00317 Ribonucleotide reductase, all-alpha domain CHQ57_03915 PF08343 Ribonucleotide reductase N-terminal CHQ57_03915 PF02867 Ribonucleotide reductase, barrel domain CHQ57_03925 PF02562 PhoH-like protein CHQ57_03925 PF13638 PIN domain CHQ57_03930 PF00005 ABC transporter CHQ57_03935 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_03955 PF00694 Aconitase C-terminal domain CHQ57_03960 PF00330 Aconitase family (aconitate hydratase) CHQ57_03965 PF00180 Isocitrate/isopropylmalate dehydrogenase CHQ57_03970 PF00682 HMGL-like CHQ57_03970 PF08502 LeuA allosteric (dimerisation) domain CHQ57_03980 PF01569 PAP2 superfamily CHQ57_03995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_03995 PF00205 Thiamine pyrophosphate enzyme, central domain CHQ57_03995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHQ57_04005 PF10369 Small subunit of acetolactate synthase CHQ57_04010 PF01548 Transposase CHQ57_04010 PF02371 Transposase IS116/IS110/IS902 family CHQ57_04015 PF07085 DRTGG domain CHQ57_04015 PF01515 Phosphate acetyl/butaryl transferase CHQ57_04020 PF00871 Acetokinase family CHQ57_04025 PF04217 Protein of unknown function, DUF412 CHQ57_04030 PF03887 YfbU domain CHQ57_04035 PF00578 AhpC/TSA family CHQ57_04040 PF01842 ACT domain CHQ57_04045 PF00701 Dihydrodipicolinate synthetase family CHQ57_04050 PF06804 NlpB/DapX lipoprotein CHQ57_04055 PF01259 SAICAR synthetase CHQ57_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_04065 PF03466 LysR substrate binding domain CHQ57_04090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_04090 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_04090 PF18415 Histidine kinase receptor ArcB trans-membrane domain CHQ57_04090 PF01627 Hpt domain CHQ57_04090 PF00989 PAS fold CHQ57_04090 PF00072 Response regulator receiver domain CHQ57_04095 PF13286 Phosphohydrolase-associated domain CHQ57_04095 PF01966 HD domain CHQ57_04105 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_04105 PF00072 Response regulator receiver domain CHQ57_04105 PF09456 RcsC Alpha-Beta-Loop (ABL) CHQ57_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_04110 PF00563 EAL domain CHQ57_04110 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_04110 PF03707 Bacterial signalling protein N terminal repeat CHQ57_04115 PF12729 Four helix bundle sensory module for signal transduction CHQ57_04115 PF00672 HAMP domain CHQ57_04115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04120 PF02357 Transcription termination factor nusG CHQ57_04125 PF03180 NLPA lipoprotein CHQ57_04130 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_04135 PF00005 ABC transporter CHQ57_04135 PF09383 NIL domain CHQ57_04145 PF00480 ROK family CHQ57_04150 PF08331 Domain of unknown function (DUF1730) CHQ57_04155 PF03853 YjeF-related protein N-terminus CHQ57_04155 PF01256 Carbohydrate kinase CHQ57_04160 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CHQ57_04165 PF01520 N-acetylmuramoyl-L-alanine amidase CHQ57_04170 PF08676 MutL C terminal dimerisation domain CHQ57_04170 PF01119 DNA mismatch repair protein, C-terminal domain CHQ57_04180 PF17209 Hfq protein CHQ57_04185 PF16360 GTP-binding GTPase Middle Region CHQ57_04185 PF13167 GTP-binding GTPase N-terminal CHQ57_04185 PF01926 50S ribosome-binding GTPase CHQ57_04190 PF01145 SPFH domain / Band 7 family CHQ57_04190 PF12221 Bacterial membrane protein N terminal CHQ57_04195 PF01145 SPFH domain / Band 7 family CHQ57_04200 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CHQ57_04205 PF00348 Polyprenyl synthetase CHQ57_04210 PF00829 Ribosomal prokaryotic L21 protein CHQ57_04215 PF01016 Ribosomal L27 protein CHQ57_04220 PF01926 50S ribosome-binding GTPase CHQ57_04220 PF01018 GTP1/OBG CHQ57_04230 PF13193 AMP-binding enzyme C-terminal domain CHQ57_04230 PF00501 AMP-binding enzyme CHQ57_04250 PF00296 Luciferase-like monooxygenase CHQ57_04265 PF00149 Calcineurin-like phosphoesterase CHQ57_04270 PF04379 ApaG domain CHQ57_04275 PF00398 Ribosomal RNA adenine dimethylase CHQ57_04280 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CHQ57_04285 PF09312 SurA N-terminal domain CHQ57_04285 PF00639 PPIC-type PPIASE domain CHQ57_04290 PF03968 OstA-like protein CHQ57_04290 PF04453 LPS transport system D CHQ57_04295 PF01636 Phosphotransferase enzyme family CHQ57_04300 PF00483 Nucleotidyl transferase CHQ57_04305 PF00226 DnaJ domain CHQ57_04305 PF05099 Tellurite resistance protein TerB CHQ57_04310 PF00860 Permease family CHQ57_04320 PF12848 ABC transporter CHQ57_04320 PF00005 ABC transporter CHQ57_04325 PF01464 Transglycosylase SLT domain CHQ57_04330 PF01370 NAD dependent epimerase/dehydratase family CHQ57_04340 PF00005 ABC transporter CHQ57_04355 PF06228 Haem utilisation ChuX/HutX CHQ57_04360 PF01243 Pyridoxamine 5'-phosphate oxidase CHQ57_04380 PF00593 TonB dependent receptor CHQ57_04380 PF07715 TonB-dependent Receptor Plug Domain CHQ57_04385 PF12832 MFS_1 like family CHQ57_04395 PF13443 Cro/C1-type HTH DNA-binding domain CHQ57_04405 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_04405 PF00989 PAS fold CHQ57_04405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_04410 PF08329 Chitinase A, N-terminal domain CHQ57_04410 PF00704 Glycosyl hydrolases family 18 CHQ57_04415 PF17945 Beta/Gamma crystallin CHQ57_04415 PF12561 ToxR activated gene A lipoprotein domain CHQ57_04420 PF18416 N-acetylglucosamine binding protein domain 2 CHQ57_04420 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CHQ57_04425 PF13847 Methyltransferase domain CHQ57_04430 PF00027 Cyclic nucleotide-binding domain CHQ57_04430 PF13545 Crp-like helix-turn-helix domain CHQ57_04435 PF02566 OsmC-like protein CHQ57_04450 PF00485 Phosphoribulokinase / Uridine kinase family CHQ57_04460 PF06794 Uncharacterised protein family (UPF0270) CHQ57_04465 PF00563 EAL domain CHQ57_04465 PF00360 Phytochrome region CHQ57_04465 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_04465 PF01590 GAF domain CHQ57_04470 PF00561 alpha/beta hydrolase fold CHQ57_04475 PF01584 CheW-like domain CHQ57_04475 PF00072 Response regulator receiver domain CHQ57_04485 PF09526 Probable metal-binding protein (DUF2387) CHQ57_04490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_04495 PF04102 SlyX CHQ57_04505 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHQ57_04505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_04510 PF00158 Sigma-54 interaction domain CHQ57_04510 PF00072 Response regulator receiver domain CHQ57_04510 PF02954 Bacterial regulatory protein, Fis family CHQ57_04530 PF00149 Calcineurin-like phosphoesterase CHQ57_04530 PF02872 5'-nucleotidase, C-terminal domain CHQ57_04535 PF12792 CSS motif domain associated with EAL CHQ57_04535 PF00563 EAL domain CHQ57_04550 PF00772 DnaB-like helicase N terminal domain CHQ57_04550 PF03796 DnaB-like helicase C terminal domain CHQ57_04555 PF03796 DnaB-like helicase C terminal domain CHQ57_04555 PF00772 DnaB-like helicase N terminal domain CHQ57_04560 PF00842 Alanine racemase, C-terminal domain CHQ57_04560 PF01168 Alanine racemase, N-terminal domain CHQ57_04565 PF12838 4Fe-4S dicluster domain CHQ57_04575 PF00989 PAS fold CHQ57_04575 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_04575 PF01590 GAF domain CHQ57_04575 PF00563 EAL domain CHQ57_04600 PF00072 Response regulator receiver domain CHQ57_04600 PF00196 Bacterial regulatory proteins, luxR family CHQ57_04605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_04605 PF00672 HAMP domain CHQ57_04605 PF01627 Hpt domain CHQ57_04605 PF00072 Response regulator receiver domain CHQ57_04605 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHQ57_04605 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_04630 PF00266 Aminotransferase class-V CHQ57_04635 PF01339 CheB methylesterase CHQ57_04635 PF00072 Response regulator receiver domain CHQ57_04640 PF03975 CheD chemotactic sensory transduction CHQ57_04645 PF01739 CheR methyltransferase, SAM binding domain CHQ57_04645 PF03705 CheR methyltransferase, all-alpha domain CHQ57_04650 PF00672 HAMP domain CHQ57_04650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04650 PF02203 Tar ligand binding domain homologue CHQ57_04655 PF01584 CheW-like domain CHQ57_04660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04660 PF12729 Four helix bundle sensory module for signal transduction CHQ57_04660 PF00672 HAMP domain CHQ57_04665 PF01584 CheW-like domain CHQ57_04665 PF02895 Signal transducing histidine kinase, homodimeric domain CHQ57_04665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_04665 PF01627 Hpt domain CHQ57_04675 PF00072 Response regulator receiver domain CHQ57_04680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04680 PF02743 Cache domain CHQ57_04680 PF00672 HAMP domain CHQ57_04690 PF03466 LysR substrate binding domain CHQ57_04690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_04695 PF01810 LysE type translocator CHQ57_04700 PF12392 Collagenase CHQ57_04700 PF01136 Peptidase family U32 CHQ57_04710 PF06906 Protein of unknown function (DUF1272) CHQ57_04715 PF01209 ubiE/COQ5 methyltransferase family CHQ57_04720 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHQ57_04720 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHQ57_04725 PF00730 HhH-GPD superfamily base excision DNA repair protein CHQ57_04725 PF12833 Helix-turn-helix domain CHQ57_04725 PF06029 AlkA N-terminal domain CHQ57_04725 PF02805 Metal binding domain of Ada CHQ57_04735 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CHQ57_04760 PF00106 short chain dehydrogenase CHQ57_04765 PF03573 outer membrane porin, OprD family CHQ57_04770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04780 PF02447 GntP family permease CHQ57_04785 PF01370 NAD dependent epimerase/dehydratase family CHQ57_04790 PF01261 Xylose isomerase-like TIM barrel CHQ57_04795 PF00596 Class II Aldolase and Adducin N-terminal domain CHQ57_04800 PF07005 Sugar-binding N-terminal domain CHQ57_04800 PF17042 Nucleotide-binding C-terminal domain CHQ57_04805 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CHQ57_04805 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHQ57_04810 PF08220 DeoR-like helix-turn-helix domain CHQ57_04810 PF00455 DeoR C terminal sensor domain CHQ57_04820 PF07995 Glucose / Sorbosone dehydrogenase CHQ57_04860 PF05230 MASE2 domain CHQ57_04860 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_04870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04870 PF08447 PAS fold CHQ57_04880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_04880 PF00672 HAMP domain CHQ57_04885 PF03050 Transposase IS66 family CHQ57_04895 PF00717 Peptidase S24-like CHQ57_04910 PF12161 HsdM N-terminal domain CHQ57_04910 PF02384 N-6 DNA Methylase CHQ57_04955 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CHQ57_05005 PF04002 RadC-like JAB domain CHQ57_05050 PF09588 YqaJ-like viral recombinase domain CHQ57_05080 PF00800 Prephenate dehydratase CHQ57_05080 PF01817 Chorismate mutase type II CHQ57_05110 PF08349 Protein of unknown function (DUF1722) CHQ57_05115 PF13411 MerR HTH family regulatory protein CHQ57_05120 PF00875 DNA photolyase CHQ57_05120 PF03441 FAD binding domain of DNA photolyase CHQ57_05130 PF00106 short chain dehydrogenase CHQ57_05170 PF00210 Ferritin-like domain CHQ57_05175 PF03063 Prismane/CO dehydrogenase family CHQ57_05180 PF00175 Oxidoreductase NAD-binding domain CHQ57_05180 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_05180 PF00970 Oxidoreductase FAD-binding domain CHQ57_05185 PF16363 GDP-mannose 4,6 dehydratase CHQ57_05195 PF13462 Thioredoxin CHQ57_05195 PF06965 Na+/H+ antiporter 1 CHQ57_05210 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain CHQ57_05210 PF06165 Glycosyltransferase family 36 CHQ57_05210 PF10091 Putative glucoamylase CHQ57_05215 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHQ57_05215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_05235 PF00119 ATP synthase A chain CHQ57_05240 PF00137 ATP synthase subunit C CHQ57_05245 PF00430 ATP synthase B/B' CF(0) CHQ57_05245 PF11154 Protein of unknown function (DUF2934) CHQ57_05250 PF00306 ATP synthase alpha/beta chain, C terminal domain CHQ57_05250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_05250 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHQ57_05255 PF00231 ATP synthase CHQ57_05260 PF03466 LysR substrate binding domain CHQ57_05260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_05265 PF03306 Alpha-acetolactate decarboxylase CHQ57_05270 PF00205 Thiamine pyrophosphate enzyme, central domain CHQ57_05270 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_05270 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHQ57_05275 PF01965 DJ-1/PfpI family CHQ57_05280 PF08546 Ketopantoate reductase PanE/ApbA C terminal CHQ57_05280 PF02558 Ketopantoate reductase PanE/ApbA CHQ57_05285 PF04461 Protein of unknown function (DUF520) CHQ57_05290 PF03502 Nucleoside-specific channel-forming protein, Tsx CHQ57_05295 PF07690 Major Facilitator Superfamily CHQ57_05305 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHQ57_05315 PF05175 Methyltransferase small domain CHQ57_05320 PF01722 BolA-like protein CHQ57_05330 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CHQ57_05330 PF11973 NQRA C-terminal domain CHQ57_05335 PF03116 NQR2, RnfD, RnfE family CHQ57_05340 PF04205 FMN-binding domain CHQ57_05345 PF02508 Rnf-Nqr subunit, membrane protein CHQ57_05350 PF02508 Rnf-Nqr subunit, membrane protein CHQ57_05355 PF00970 Oxidoreductase FAD-binding domain CHQ57_05355 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_05355 PF00175 Oxidoreductase NAD-binding domain CHQ57_05360 PF02424 ApbE family CHQ57_05375 PF11799 impB/mucB/samB family C-terminal domain CHQ57_05375 PF11798 IMS family HHH motif CHQ57_05375 PF00817 impB/mucB/samB family CHQ57_05380 PF00672 HAMP domain CHQ57_05380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_05385 PF03466 LysR substrate binding domain CHQ57_05395 PF04241 Protein of unknown function (DUF423) CHQ57_05400 PF18125 RlmM ferredoxin-like domain CHQ57_05400 PF01728 FtsJ-like methyltransferase CHQ57_05410 PF00180 Isocitrate/isopropylmalate dehydrogenase CHQ57_05410 PF18324 Hypothetical protein TT1725 CHQ57_05415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CHQ57_05415 PF01367 5'-3' exonuclease, C-terminal SAM fold CHQ57_05420 PF11892 Domain of unknown function (DUF3412) CHQ57_05420 PF03641 Possible lysine decarboxylase CHQ57_05420 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CHQ57_05425 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_05425 PF07694 5TMR of 5TMR-LYT CHQ57_05435 PF14489 QueF-like protein CHQ57_05435 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CHQ57_05440 PF07348 Syd protein (SUKH-2) CHQ57_05445 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CHQ57_05470 PF04287 tRNA pseudouridine synthase C CHQ57_05475 PF00849 RNA pseudouridylate synthase CHQ57_05480 PF00258 Flavodoxin CHQ57_05485 PF02264 LamB porin CHQ57_05490 PF07148 Maltose operon periplasmic protein precursor (MalM) CHQ57_05495 PF02378 Phosphotransferase system, EIIC CHQ57_05495 PF00367 phosphotransferase system, EIIB CHQ57_05500 PF11944 Protein of unknown function (DUF3461) CHQ57_05505 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CHQ57_05505 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_05505 PF14602 Hexapeptide repeat of succinyl-transferase CHQ57_05510 PF01909 Nucleotidyltransferase domain CHQ57_05510 PF08335 GlnD PII-uridylyltransferase CHQ57_05510 PF01966 HD domain CHQ57_05510 PF01842 ACT domain CHQ57_05515 PF00557 Metallopeptidase family M24 CHQ57_05520 PF00318 Ribosomal protein S2 CHQ57_05525 PF00889 Elongation factor TS CHQ57_05530 PF00696 Amino acid kinase family CHQ57_05535 PF01765 Ribosome recycling factor CHQ57_05540 PF01255 Putative undecaprenyl diphosphate synthase CHQ57_05550 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CHQ57_05550 PF13288 DXP reductoisomerase C-terminal domain CHQ57_05550 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CHQ57_05555 PF17820 PDZ domain CHQ57_05555 PF02163 Peptidase family M50 CHQ57_05560 PF07244 Surface antigen variable number repeat CHQ57_05560 PF01103 Surface antigen CHQ57_05565 PF03938 Outer membrane protein (OmpH-like) CHQ57_05570 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_05570 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CHQ57_05575 PF07977 FabA-like domain CHQ57_05580 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_05580 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CHQ57_05585 PF02684 Lipid-A-disaccharide synthetase CHQ57_05590 PF01351 Ribonuclease HII CHQ57_05595 PF01336 OB-fold nucleic acid binding domain CHQ57_05595 PF02811 PHP domain CHQ57_05595 PF14579 Helix-hairpin-helix motif CHQ57_05595 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHQ57_05595 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHQ57_05600 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CHQ57_05605 PF18500 CadC C-terminal domain 1 CHQ57_05605 PF00486 Transcriptional regulatory protein, C terminal CHQ57_05610 PF13520 Amino acid permease CHQ57_05615 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CHQ57_05615 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CHQ57_05615 PF01276 Orn/Lys/Arg decarboxylase, major domain CHQ57_05620 PF08543 Phosphomethylpyrimidine kinase CHQ57_05630 PF03466 LysR substrate binding domain CHQ57_05630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_05640 PF13520 Amino acid permease CHQ57_05645 PF13302 Acetyltransferase (GNAT) domain CHQ57_05650 PF00005 ABC transporter CHQ57_05650 PF16326 ABC transporter C-terminal domain CHQ57_05650 PF12848 ABC transporter CHQ57_05660 PF05649 Peptidase family M13 CHQ57_05660 PF01431 Peptidase family M13 CHQ57_05665 PF11734 TilS substrate C-terminal domain CHQ57_05665 PF01171 PP-loop family CHQ57_05665 PF09179 TilS substrate binding domain CHQ57_05670 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_05675 PF02080 TrkA-C domain CHQ57_05675 PF02254 TrkA-N domain CHQ57_05675 PF00999 Sodium/hydrogen exchanger family CHQ57_05705 PF00128 Alpha amylase, catalytic domain CHQ57_05715 PF01161 Phosphatidylethanolamine-binding protein CHQ57_05725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_05725 PF03466 LysR substrate binding domain CHQ57_05735 PF00155 Aminotransferase class I and II CHQ57_05740 PF07690 Major Facilitator Superfamily CHQ57_05745 PF03466 LysR substrate binding domain CHQ57_05745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_05750 PF00106 short chain dehydrogenase CHQ57_05755 PF01343 Peptidase family S49 CHQ57_05755 PF08496 Peptidase family S49 N-terminal CHQ57_05760 PF04996 Succinylarginine dihydrolase CHQ57_05765 PF08272 Topoisomerase I zinc-ribbon-like CHQ57_05765 PF01396 Topoisomerase DNA binding C4 zinc finger CHQ57_05765 PF01751 Toprim domain CHQ57_05765 PF01131 DNA topoisomerase CHQ57_05775 PF08447 PAS fold CHQ57_05775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_05780 PF02838 Glycosyl hydrolase family 20, domain 2 CHQ57_05780 PF00728 Glycosyl hydrolase family 20, catalytic domain CHQ57_05785 PF01869 BadF/BadG/BcrA/BcrD ATPase family CHQ57_05795 PF00005 ABC transporter CHQ57_05795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_05800 PF00005 ABC transporter CHQ57_05800 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_05805 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_05805 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_05810 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_05815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_05820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_05820 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_05820 PF00072 Response regulator receiver domain CHQ57_05820 PF09308 LuxQ, periplasmic CHQ57_05840 PF10725 Protein of unknown function (DUF2517) CHQ57_05850 PF08447 PAS fold CHQ57_05850 PF13426 PAS domain CHQ57_05850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_05860 PF04632 Fusaric acid resistance protein family CHQ57_05865 PF03453 MoeA N-terminal region (domain I and II) CHQ57_05865 PF03454 MoeA C-terminal region (domain IV) CHQ57_05865 PF00994 Probable molybdopterin binding domain CHQ57_05870 PF12804 MobA-like NTP transferase domain CHQ57_05875 PF00005 ABC transporter CHQ57_05880 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_05885 PF12849 PBP superfamily domain CHQ57_05890 PF00158 Sigma-54 interaction domain CHQ57_05890 PF00072 Response regulator receiver domain CHQ57_05890 PF02954 Bacterial regulatory protein, Fis family CHQ57_05895 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_05895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_05895 PF00989 PAS fold CHQ57_05905 PF02634 FdhD/NarQ family CHQ57_05945 PF12838 4Fe-4S dicluster domain CHQ57_05945 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CHQ57_05945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHQ57_05945 PF01568 Molydopterin dinucleotide binding domain CHQ57_05945 PF00384 Molybdopterin oxidoreductase CHQ57_05950 PF13247 4Fe-4S dicluster domain CHQ57_05965 PF03949 Malic enzyme, NAD binding domain CHQ57_05965 PF00390 Malic enzyme, N-terminal domain CHQ57_05970 PF00860 Permease family CHQ57_05975 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_05980 PF12729 Four helix bundle sensory module for signal transduction CHQ57_05980 PF00672 HAMP domain CHQ57_05980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_05990 PF10282 Lactonase, 7-bladed beta-propeller CHQ57_05995 PF12794 Mechanosensitive ion channel inner membrane domain 1 CHQ57_05995 PF00924 Mechanosensitive ion channel CHQ57_05995 PF12795 Mechanosensitive ion channel porin domain CHQ57_06000 PF02887 Pyruvate kinase, alpha/beta domain CHQ57_06000 PF00224 Pyruvate kinase, barrel domain CHQ57_06010 PF04389 Peptidase family M28 CHQ57_06010 PF04151 Bacterial pre-peptidase C-terminal domain CHQ57_06015 PF02254 TrkA-N domain CHQ57_06015 PF00999 Sodium/hydrogen exchanger family CHQ57_06025 PF04381 Putative exonuclease, RdgC CHQ57_06040 PF13476 AAA domain CHQ57_06045 PF01292 Prokaryotic cytochrome b561 CHQ57_06055 PF08448 PAS fold CHQ57_06055 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_06060 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHQ57_06065 PF00391 PEP-utilising enzyme, mobile domain CHQ57_06065 PF02896 PEP-utilising enzyme, TIM barrel domain CHQ57_06065 PF05524 PEP-utilising enzyme, N-terminal CHQ57_06070 PF00381 PTS HPr component phosphorylation site CHQ57_06075 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_06090 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CHQ57_06090 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CHQ57_06100 PF01980 tRNA-methyltransferase O CHQ57_06100 PF18389 TrmO C-terminal domain CHQ57_06120 PF00005 ABC transporter CHQ57_06120 PF00664 ABC transporter transmembrane region CHQ57_06125 PF00664 ABC transporter transmembrane region CHQ57_06125 PF00005 ABC transporter CHQ57_06140 PF00486 Transcriptional regulatory protein, C terminal CHQ57_06140 PF00072 Response regulator receiver domain CHQ57_06150 PF03737 Aldolase/RraA CHQ57_06165 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CHQ57_06170 PF00588 SpoU rRNA Methylase family CHQ57_06175 PF03447 Homoserine dehydrogenase, NAD binding domain CHQ57_06175 PF00742 Homoserine dehydrogenase CHQ57_06175 PF00696 Amino acid kinase family CHQ57_06175 PF13840 ACT domain CHQ57_06175 PF01842 ACT domain CHQ57_06180 PF00288 GHMP kinases N terminal domain CHQ57_06180 PF08544 GHMP kinases C terminal CHQ57_06185 PF14821 Threonine synthase N terminus CHQ57_06185 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_06210 PF00300 Histidine phosphatase superfamily (branch 1) CHQ57_06230 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CHQ57_06235 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHQ57_06235 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_06240 PF02690 Na+/Pi-cotransporter CHQ57_06245 PF00324 Amino acid permease CHQ57_06255 PF00324 Amino acid permease CHQ57_06260 PF00202 Aminotransferase class-III CHQ57_06265 PF00171 Aldehyde dehydrogenase family CHQ57_06270 PF07883 Cupin domain CHQ57_06270 PF01381 Helix-turn-helix CHQ57_06275 PF01266 FAD dependent oxidoreductase CHQ57_06305 PF00816 H-NS histone family CHQ57_06315 PF00793 DAHP synthetase I family CHQ57_06320 PF08021 Siderophore-interacting FAD-binding domain CHQ57_06320 PF04954 Siderophore-interacting protein CHQ57_06325 PF02321 Outer membrane efflux protein CHQ57_06330 PF02687 FtsX-like permease family CHQ57_06330 PF00005 ABC transporter CHQ57_06330 PF12704 MacB-like periplasmic core domain CHQ57_06335 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_06345 PF01368 DHH family CHQ57_06345 PF02833 DHHA2 domain CHQ57_06350 PF02463 RecF/RecN/SMC N terminal domain CHQ57_06355 PF01513 ATP-NAD kinase CHQ57_06360 PF01025 GrpE CHQ57_06365 PF00012 Hsp70 protein CHQ57_06370 PF00226 DnaJ domain CHQ57_06370 PF01556 DnaJ C terminal domain CHQ57_06370 PF00684 DnaJ central domain CHQ57_06375 PF11471 Maltoporin periplasmic N-terminal extension CHQ57_06375 PF02264 LamB porin CHQ57_06380 PF00294 pfkB family carbohydrate kinase CHQ57_06385 PF02378 Phosphotransferase system, EIIC CHQ57_06385 PF00367 phosphotransferase system, EIIB CHQ57_06390 PF00251 Glycosyl hydrolases family 32 N-terminal domain CHQ57_06390 PF08244 Glycosyl hydrolases family 32 C terminal CHQ57_06395 PF13407 Periplasmic binding protein domain CHQ57_06395 PF00356 Bacterial regulatory proteins, lacI family CHQ57_06405 PF00860 Permease family CHQ57_06410 PF00072 Response regulator receiver domain CHQ57_06410 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_06415 PF10692 Protein of unknown function (DUF2498) CHQ57_06420 PF01554 MatE CHQ57_06425 PF12833 Helix-turn-helix domain CHQ57_06430 PF00390 Malic enzyme, N-terminal domain CHQ57_06430 PF03949 Malic enzyme, NAD binding domain CHQ57_06435 PF01389 OmpA-like transmembrane domain CHQ57_06435 PF00691 OmpA family CHQ57_06440 PF00691 OmpA family CHQ57_06440 PF01389 OmpA-like transmembrane domain CHQ57_06445 PF00691 OmpA family CHQ57_06445 PF01389 OmpA-like transmembrane domain CHQ57_06460 PF00209 Sodium:neurotransmitter symporter family CHQ57_06465 PF01734 Patatin-like phospholipase CHQ57_06470 PF05230 MASE2 domain CHQ57_06470 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_06475 PF13533 Biotin-lipoyl like CHQ57_06480 PF00873 AcrB/AcrD/AcrF family CHQ57_06490 PF11842 Domain of unknown function (DUF3362) CHQ57_06490 PF04055 Radical SAM superfamily CHQ57_06490 PF08497 Radical SAM N-terminal CHQ57_06525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHQ57_06530 PF02075 Crossover junction endodeoxyribonuclease RuvC CHQ57_06535 PF00230 Major intrinsic protein CHQ57_06540 PF01551 Peptidase family M23 CHQ57_06540 PF10145 Phage-related minor tail protein CHQ57_06540 PF01464 Transglycosylase SLT domain CHQ57_06545 PF00128 Alpha amylase, catalytic domain CHQ57_06550 PF01551 Peptidase family M23 CHQ57_06565 PF13091 PLD-like domain CHQ57_06565 PF13396 Phospholipase_D-nuclease N-terminal CHQ57_06575 PF01842 ACT domain CHQ57_06575 PF00551 Formyl transferase CHQ57_06580 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHQ57_06595 PF01648 4'-phosphopantetheinyl transferase superfamily CHQ57_06600 PF00877 NlpC/P60 family CHQ57_06605 PF05971 RNA methyltransferase CHQ57_06620 PF01476 LysM domain CHQ57_06620 PF17969 L,D-transpeptidase C-terminal domain CHQ57_06620 PF03734 L,D-transpeptidase catalytic domain CHQ57_06630 PF03695 Uncharacterised protein family (UPF0149) CHQ57_06630 PF02810 SEC-C motif CHQ57_06645 PF00176 SNF2 family N-terminal domain CHQ57_06645 PF00271 Helicase conserved C-terminal domain CHQ57_06665 PF13358 DDE superfamily endonuclease CHQ57_06665 PF13592 Winged helix-turn helix CHQ57_06725 PF04002 RadC-like JAB domain CHQ57_06760 PF09588 YqaJ-like viral recombinase domain CHQ57_06775 PF05930 Prophage CP4-57 regulatory protein (AlpA) CHQ57_06780 PF13148 Protein of unknown function (DUF3987) CHQ57_06795 PF00816 H-NS histone family CHQ57_06800 PF13356 Arm DNA-binding domain CHQ57_06800 PF00589 Phage integrase family CHQ57_06810 PF01668 SmpB protein CHQ57_06815 PF03364 Polyketide cyclase / dehydrase and lipid transport CHQ57_06825 PF13460 NAD(P)H-binding CHQ57_06830 PF04355 SmpA / OmlA family CHQ57_06860 PF13629 Pilus formation protein N terminal region CHQ57_06860 PF00263 Bacterial type II and III secretion system protein CHQ57_06860 PF04972 BON domain CHQ57_06870 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CHQ57_06910 PF00465 Iron-containing alcohol dehydrogenase CHQ57_06915 PF01048 Phosphorylase superfamily CHQ57_06920 PF00849 RNA pseudouridylate synthase CHQ57_06925 PF01156 Inosine-uridine preferring nucleoside hydrolase CHQ57_06940 PF07509 Protein of unknown function (DUF1523) CHQ57_06945 PF12729 Four helix bundle sensory module for signal transduction CHQ57_06945 PF00672 HAMP domain CHQ57_06945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_06950 PF01810 LysE type translocator CHQ57_06960 PF02080 TrkA-C domain CHQ57_06960 PF00999 Sodium/hydrogen exchanger family CHQ57_06960 PF03471 Transporter associated domain CHQ57_06970 PF00999 Sodium/hydrogen exchanger family CHQ57_06970 PF02080 TrkA-C domain CHQ57_06970 PF03471 Transporter associated domain CHQ57_06980 PF02557 D-alanyl-D-alanine carboxypeptidase CHQ57_06985 PF07687 Peptidase dimerisation domain CHQ57_06985 PF01546 Peptidase family M20/M25/M40 CHQ57_06990 PF03960 ArsC family CHQ57_06995 PF03466 LysR substrate binding domain CHQ57_06995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07010 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHQ57_07015 PF01336 OB-fold nucleic acid binding domain CHQ57_07015 PF00152 tRNA synthetases class II (D, K and N) CHQ57_07030 PF00202 Aminotransferase class-III CHQ57_07035 PF04055 Radical SAM superfamily CHQ57_07035 PF06968 Biotin and Thiamin Synthesis associated domain CHQ57_07040 PF00155 Aminotransferase class I and II CHQ57_07045 PF12697 Alpha/beta hydrolase family CHQ57_07045 PF08241 Methyltransferase domain CHQ57_07055 PF01435 Peptidase family M48 CHQ57_07060 PF13426 PAS domain CHQ57_07060 PF08447 PAS fold CHQ57_07060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_07065 PF03473 MOSC domain CHQ57_07065 PF03476 MOSC N-terminal beta barrel domain CHQ57_07065 PF03473 MOSC domain CHQ57_07065 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_07065 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_07065 PF03476 MOSC N-terminal beta barrel domain CHQ57_07070 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHQ57_07070 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_07070 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CHQ57_07075 PF10371 Domain of unknown function CHQ57_07075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_07075 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CHQ57_07075 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CHQ57_07075 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CHQ57_07080 PF04325 Protein of unknown function (DUF465) CHQ57_07090 PF01554 MatE CHQ57_07095 PF01740 STAS domain CHQ57_07095 PF00916 Sulfate permease family CHQ57_07110 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_07120 PF00465 Iron-containing alcohol dehydrogenase CHQ57_07135 PF00171 Aldehyde dehydrogenase family CHQ57_07145 PF00877 NlpC/P60 family CHQ57_07150 PF12563 Hemolytic toxin N terminal CHQ57_07150 PF07968 Leukocidin/Hemolysin toxin family CHQ57_07155 PF03466 LysR substrate binding domain CHQ57_07155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07160 PF00578 AhpC/TSA family CHQ57_07160 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHQ57_07180 PF08003 Protein of unknown function (DUF1698) CHQ57_07185 PF13649 Methyltransferase domain CHQ57_07190 PF01904 Protein of unknown function DUF72 CHQ57_07195 PF00152 tRNA synthetases class II (D, K and N) CHQ57_07195 PF02938 GAD domain CHQ57_07195 PF01336 OB-fold nucleic acid binding domain CHQ57_07200 PF01709 Transcriptional regulator CHQ57_07205 PF08019 Phosphoethanolamine transferase EptA/EptB CHQ57_07205 PF00884 Sulfatase CHQ57_07210 PF01047 MarR family CHQ57_07210 PF00480 ROK family CHQ57_07215 PF01979 Amidohydrolase family CHQ57_07220 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CHQ57_07225 PF02378 Phosphotransferase system, EIIC CHQ57_07225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHQ57_07225 PF00367 phosphotransferase system, EIIB CHQ57_07230 PF03173 Putative carbohydrate binding domain CHQ57_07230 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CHQ57_07230 PF00728 Glycosyl hydrolase family 20, catalytic domain CHQ57_07230 PF02838 Glycosyl hydrolase family 20, domain 2 CHQ57_07235 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CHQ57_07235 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHQ57_07240 PF01475 Ferric uptake regulator family CHQ57_07250 PF00258 Flavodoxin CHQ57_07255 PF01402 Ribbon-helix-helix protein, copG family CHQ57_07265 PF12697 Alpha/beta hydrolase family CHQ57_07270 PF17206 SeqA protein N-terminal domain CHQ57_07270 PF03925 SeqA protein C-terminal domain CHQ57_07275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHQ57_07275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHQ57_07275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHQ57_07275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHQ57_07285 PF01047 MarR family CHQ57_07290 PF13406 Transglycosylase SLT domain CHQ57_07295 PF01066 CDP-alcohol phosphatidyltransferase CHQ57_07300 PF00005 ABC transporter CHQ57_07305 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_07310 PF13416 Bacterial extracellular solute-binding protein CHQ57_07315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHQ57_07315 PF00403 Heavy-metal-associated domain CHQ57_07315 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_07320 PF02627 Carboxymuconolactone decarboxylase family CHQ57_07330 PF01625 Peptide methionine sulfoxide reductase CHQ57_07335 PF13737 Transposase DDE domain CHQ57_07360 PF07244 Surface antigen variable number repeat CHQ57_07360 PF17243 POTRA domain TamA domain 1 CHQ57_07360 PF01103 Surface antigen CHQ57_07365 PF04357 TamB, inner membrane protein subunit of TAM complex CHQ57_07385 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHQ57_07390 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_07390 PF00563 EAL domain CHQ57_07390 PF03707 Bacterial signalling protein N terminal repeat CHQ57_07395 PF01464 Transglycosylase SLT domain CHQ57_07395 PF14718 Soluble lytic murein transglycosylase L domain CHQ57_07400 PF00356 Bacterial regulatory proteins, lacI family CHQ57_07410 PF03061 Thioesterase superfamily CHQ57_07420 PF03372 Endonuclease/Exonuclease/phosphatase family CHQ57_07425 PF01464 Transglycosylase SLT domain CHQ57_07425 PF01476 LysM domain CHQ57_07430 PF16123 Hydroxyacylglutathione hydrolase C-terminus CHQ57_07430 PF00753 Metallo-beta-lactamase superfamily CHQ57_07435 PF08241 Methyltransferase domain CHQ57_07440 PF00075 RNase H CHQ57_07445 PF00929 Exonuclease CHQ57_07465 PF11849 Domain of unknown function (DUF3369) CHQ57_07470 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHQ57_07470 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHQ57_07470 PF02770 Acyl-CoA dehydrogenase, middle domain CHQ57_07470 PF09317 Domain of unknown function (DUF1974) CHQ57_07475 PF13580 SIS domain CHQ57_07480 PF13230 Glutamine amidotransferases class-II CHQ57_07490 PF01933 Uncharacterised protein family UPF0052 CHQ57_07500 PF17149 Periplasmic sensor domain found in signal transduction proteins CHQ57_07500 PF00672 HAMP domain CHQ57_07500 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_07500 PF01627 Hpt domain CHQ57_07500 PF00072 Response regulator receiver domain CHQ57_07500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_07510 PF00072 Response regulator receiver domain CHQ57_07510 PF00196 Bacterial regulatory proteins, luxR family CHQ57_07515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_07515 PF07730 Histidine kinase CHQ57_07515 PF00672 HAMP domain CHQ57_07515 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CHQ57_07520 PF04055 Radical SAM superfamily CHQ57_07520 PF06463 Molybdenum Cofactor Synthesis C CHQ57_07525 PF13187 4Fe-4S dicluster domain CHQ57_07525 PF12838 4Fe-4S dicluster domain CHQ57_07535 PF10518 TAT (twin-arginine translocation) pathway signal sequence CHQ57_07535 PF01568 Molydopterin dinucleotide binding domain CHQ57_07535 PF00384 Molybdopterin oxidoreductase CHQ57_07535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHQ57_07540 PF12800 4Fe-4S binding domain CHQ57_07540 PF12838 4Fe-4S dicluster domain CHQ57_07545 PF12837 4Fe-4S binding domain CHQ57_07545 PF12801 4Fe-4S binding domain CHQ57_07550 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CHQ57_07555 PF03264 NapC/NirT cytochrome c family, N-terminal region CHQ57_07560 PF00994 Probable molybdopterin binding domain CHQ57_07565 PF01967 MoaC family CHQ57_07570 PF02597 ThiS family CHQ57_07575 PF02391 MoaE protein CHQ57_07585 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_07590 PF00005 ABC transporter CHQ57_07590 PF03459 TOBE domain CHQ57_07595 PF00561 alpha/beta hydrolase fold CHQ57_07605 PF00899 ThiF family CHQ57_07610 PF03454 MoeA C-terminal region (domain IV) CHQ57_07610 PF00994 Probable molybdopterin binding domain CHQ57_07610 PF03453 MoeA N-terminal region (domain I and II) CHQ57_07620 PF01227 GTP cyclohydrolase I CHQ57_07625 PF17200 Single Cache domain 2 CHQ57_07625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_07625 PF00672 HAMP domain CHQ57_07630 PF01268 Formate--tetrahydrofolate ligase CHQ57_07640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07640 PF03466 LysR substrate binding domain CHQ57_07645 PF04264 YceI-like domain CHQ57_07670 PF07687 Peptidase dimerisation domain CHQ57_07670 PF01546 Peptidase family M20/M25/M40 CHQ57_07680 PF17944 Arginine decarboxylase C-terminal helical extension CHQ57_07680 PF17810 Arginine decarboxylase helical bundle domain CHQ57_07680 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHQ57_07695 PF00300 Histidine phosphatase superfamily (branch 1) CHQ57_07700 PF00145 C-5 cytosine-specific DNA methylase CHQ57_07705 PF17203 Single cache domain 3 CHQ57_07705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_07715 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_07725 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CHQ57_07725 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CHQ57_07730 PF01479 S4 domain CHQ57_07730 PF00849 RNA pseudouridylate synthase CHQ57_07735 PF09009 Exotoxin A catalytic CHQ57_07735 PF09101 Exotoxin A binding CHQ57_07735 PF09102 Exotoxin A, targeting CHQ57_07750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07750 PF03466 LysR substrate binding domain CHQ57_07760 PF10689 Protein of unknown function (DUF2496) CHQ57_07770 PF04391 Protein of unknown function (DUF533) CHQ57_07785 PF01654 Cytochrome bd terminal oxidase subunit I CHQ57_07790 PF02322 Cytochrome bd terminal oxidase subunit II CHQ57_07800 PF07690 Major Facilitator Superfamily CHQ57_07805 PF00248 Aldo/keto reductase family CHQ57_07810 PF03992 Antibiotic biosynthesis monooxygenase CHQ57_07835 PF03466 LysR substrate binding domain CHQ57_07835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHQ57_07840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CHQ57_07845 PF00230 Major intrinsic protein CHQ57_07850 PF07690 Major Facilitator Superfamily CHQ57_07855 PF00455 DeoR C terminal sensor domain CHQ57_07855 PF08220 DeoR-like helix-turn-helix domain CHQ57_07865 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CHQ57_07865 PF01266 FAD dependent oxidoreductase CHQ57_07870 PF03009 Glycerophosphoryl diester phosphodiesterase family CHQ57_07875 PF00793 DAHP synthetase I family CHQ57_07880 PF01817 Chorismate mutase type II CHQ57_07880 PF02153 Prephenate dehydrogenase CHQ57_07885 PF03466 LysR substrate binding domain CHQ57_07885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_07890 PF04219 Protein of unknown function, DUF CHQ57_07895 PF03974 Ecotin CHQ57_07915 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CHQ57_07915 PF00326 Prolyl oligopeptidase family CHQ57_07920 PF07715 TonB-dependent Receptor Plug Domain CHQ57_07920 PF00593 TonB dependent receptor CHQ57_07925 PF11893 Domain of unknown function (DUF3413) CHQ57_07925 PF00884 Sulfatase CHQ57_07930 PF07208 Protein of unknown function (DUF1414) CHQ57_07935 PF04245 37-kD nucleoid-associated bacterial protein CHQ57_07940 PF01547 Bacterial extracellular solute-binding protein CHQ57_07945 PF14785 Maltose transport system permease protein MalF P2 domain CHQ57_07945 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_07950 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_07955 PF00005 ABC transporter CHQ57_07955 PF08402 TOBE domain CHQ57_07960 PF03976 Polyphosphate kinase 2 (PPK2) CHQ57_07965 PF00561 alpha/beta hydrolase fold CHQ57_07970 PF01594 AI-2E family transporter CHQ57_07975 PF01206 Sulfurtransferase TusA CHQ57_07980 PF07720 Tetratricopeptide repeat CHQ57_07980 PF01435 Peptidase family M48 CHQ57_07985 PF00085 Thioredoxin CHQ57_07990 PF03960 ArsC family CHQ57_08000 PF04336 Acyl carrier protein phosphodiesterase CHQ57_08005 PF03956 Lysine exporter LysO CHQ57_08010 PF00005 ABC transporter CHQ57_08015 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_08020 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_08025 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_08040 PF04055 Radical SAM superfamily CHQ57_08045 PF00563 EAL domain CHQ57_08045 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_08045 PF03707 Bacterial signalling protein N terminal repeat CHQ57_08050 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_08050 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHQ57_08060 PF00905 Penicillin binding protein transpeptidase domain CHQ57_08060 PF00912 Transglycosylase CHQ57_08060 PF06832 Penicillin-Binding Protein C-terminus Family CHQ57_08070 PF02568 Thiamine biosynthesis protein (ThiI) CHQ57_08070 PF02926 THUMP domain CHQ57_08080 PF03458 UPF0126 domain CHQ57_08085 PF00700 Bacterial flagellin C-terminal helical region CHQ57_08085 PF07196 Flagellin hook IN motif CHQ57_08085 PF00669 Bacterial flagellin N-terminal helical region CHQ57_08090 PF00669 Bacterial flagellin N-terminal helical region CHQ57_08090 PF07196 Flagellin hook IN motif CHQ57_08090 PF00700 Bacterial flagellin C-terminal helical region CHQ57_08095 PF03646 FlaG protein CHQ57_08100 PF07195 Flagellar hook-associated protein 2 C-terminus CHQ57_08100 PF07196 Flagellin hook IN motif CHQ57_08100 PF02465 Flagellar hook-associated protein 2 N-terminus CHQ57_08105 PF02561 Flagellar protein FliS CHQ57_08130 PF08666 SAF domain CHQ57_08130 PF03102 NeuB family CHQ57_08145 PF00202 Aminotransferase class-III CHQ57_08150 PF02348 Cytidylyltransferase CHQ57_08160 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHQ57_08165 PF02719 Polysaccharide biosynthesis protein CHQ57_08170 PF01497 Periplasmic binding protein CHQ57_08180 PF01048 Phosphorylase superfamily CHQ57_08190 PF02535 ZIP Zinc transporter CHQ57_08195 PF12729 Four helix bundle sensory module for signal transduction CHQ57_08195 PF00672 HAMP domain CHQ57_08195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_08200 PF00459 Inositol monophosphatase family CHQ57_08210 PF02798 Glutathione S-transferase, N-terminal domain CHQ57_08210 PF00043 Glutathione S-transferase, C-terminal domain CHQ57_08220 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_08225 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_08225 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_08230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_08230 PF00005 ABC transporter CHQ57_08235 PF07690 Major Facilitator Superfamily CHQ57_08240 PF03466 LysR substrate binding domain CHQ57_08240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_08245 PF02634 FdhD/NarQ family CHQ57_08250 PF00384 Molybdopterin oxidoreductase CHQ57_08260 PF05164 Cell division protein ZapA CHQ57_08265 PF03695 Uncharacterised protein family (UPF0149) CHQ57_08270 PF01494 FAD binding domain CHQ57_08275 PF01494 FAD binding domain CHQ57_08280 PF01571 Aminomethyltransferase folate-binding domain CHQ57_08280 PF08669 Glycine cleavage T-protein C-terminal barrel domain CHQ57_08285 PF01597 Glycine cleavage H-protein CHQ57_08290 PF02347 Glycine cleavage system P-protein CHQ57_08300 PF07690 Major Facilitator Superfamily CHQ57_08315 PF04226 Transglycosylase associated protein CHQ57_08320 PF00149 Calcineurin-like phosphoesterase CHQ57_08330 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CHQ57_08335 PF01406 tRNA synthetases class I (C) catalytic domain CHQ57_08335 PF09190 DALR domain CHQ57_08355 PF13358 DDE superfamily endonuclease CHQ57_08355 PF13592 Winged helix-turn helix CHQ57_08370 PF05717 IS66 Orf2 like protein CHQ57_08400 PF01609 Transposase DDE domain CHQ57_08400 PF05598 Transposase domain (DUF772) CHQ57_08415 PF13185 GAF domain CHQ57_08415 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_08445 PF01169 Uncharacterized protein family UPF0016 CHQ57_08450 PF01253 Translation initiation factor SUI1 CHQ57_08460 PF07664 Ferrous iron transport protein B C terminus CHQ57_08460 PF02421 Ferrous iron transport protein B CHQ57_08460 PF07670 Nucleoside recognition CHQ57_08475 PF00483 Nucleotidyl transferase CHQ57_08480 PF00437 Type II/IV secretion system protein CHQ57_08490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_08490 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_08490 PF00072 Response regulator receiver domain CHQ57_08490 PF00989 PAS fold CHQ57_08490 PF01627 Hpt domain CHQ57_08490 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_08500 PF00005 ABC transporter CHQ57_08505 PF00793 DAHP synthetase I family CHQ57_08510 PF01219 Prokaryotic diacylglycerol kinase CHQ57_08515 PF01842 ACT domain CHQ57_08515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_08515 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHQ57_08520 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CHQ57_08525 PF01812 5-formyltetrahydrofolate cyclo-ligase family CHQ57_08540 PF05173 Dihydrodipicolinate reductase, C-terminus CHQ57_08540 PF01113 Dihydrodipicolinate reductase, N-terminus CHQ57_08545 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CHQ57_08545 PF00117 Glutamine amidotransferase class-I CHQ57_08550 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHQ57_08550 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CHQ57_08550 PF02142 MGS-like domain CHQ57_08555 PF08502 LeuA allosteric (dimerisation) domain CHQ57_08555 PF00682 HMGL-like CHQ57_08560 PF07759 Protein of unknown function (DUF1615) CHQ57_08565 PF03575 Peptidase family S51 CHQ57_08570 PF08378 Nuclease-related domain CHQ57_08585 PF13302 Acetyltransferase (GNAT) domain CHQ57_08590 PF00270 DEAD/DEAH box helicase CHQ57_08590 PF00271 Helicase conserved C-terminal domain CHQ57_08600 PF14521 Lysine-specific metallo-endopeptidase CHQ57_08615 PF00376 MerR family regulatory protein CHQ57_08615 PF09278 MerR, DNA binding CHQ57_08630 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CHQ57_08630 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_08635 PF01493 GXGXG motif CHQ57_08635 PF01645 Conserved region in glutamate synthase CHQ57_08635 PF04898 Glutamate synthase central domain CHQ57_08635 PF00310 Glutamine amidotransferases class-II CHQ57_08640 PF16199 Radical_SAM C-terminal domain CHQ57_08640 PF04055 Radical SAM superfamily CHQ57_08645 PF00664 ABC transporter transmembrane region CHQ57_08645 PF00005 ABC transporter CHQ57_08645 PF03412 Peptidase C39 family CHQ57_08695 PF00324 Amino acid permease CHQ57_08705 PF03618 Kinase/pyrophosphorylase CHQ57_08710 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CHQ57_08710 PF02896 PEP-utilising enzyme, TIM barrel domain CHQ57_08710 PF00391 PEP-utilising enzyme, mobile domain CHQ57_08720 PF14310 Fibronectin type III-like domain CHQ57_08720 PF00933 Glycosyl hydrolase family 3 N terminal domain CHQ57_08720 PF01915 Glycosyl hydrolase family 3 C-terminal domain CHQ57_08730 PF00082 Subtilase family CHQ57_08730 PF01483 Proprotein convertase P-domain CHQ57_08745 PF13592 Winged helix-turn helix CHQ57_08745 PF13358 DDE superfamily endonuclease CHQ57_08755 PF03180 NLPA lipoprotein CHQ57_08760 PF01569 PAP2 superfamily CHQ57_08765 PF11890 Domain of unknown function (DUF3410) CHQ57_08765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_08765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHQ57_08770 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHQ57_08770 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHQ57_08780 PF01416 tRNA pseudouridine synthase CHQ57_08785 PF01039 Carboxyl transferase domain CHQ57_08785 PF17848 Acetyl-coA carboxylase zinc finger domain CHQ57_08790 PF08245 Mur ligase middle domain CHQ57_08790 PF02875 Mur ligase family, glutamate ligase domain CHQ57_08795 PF05036 Sporulation related domain CHQ57_08800 PF04358 DsrC like protein CHQ57_08805 PF12805 FUSC-like inner membrane protein yccS CHQ57_08810 PF01027 Inhibitor of apoptosis-promoting Bax1 CHQ57_08825 PF00873 AcrB/AcrD/AcrF family CHQ57_08830 PF00529 HlyD membrane-fusion protein of T1SS CHQ57_08830 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_08835 PF00072 Response regulator receiver domain CHQ57_08835 PF00486 Transcriptional regulatory protein, C terminal CHQ57_08840 PF13426 PAS domain CHQ57_08840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_08840 PF00672 HAMP domain CHQ57_08840 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_08845 PF08447 PAS fold CHQ57_08845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_08850 PF00563 EAL domain CHQ57_08850 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_08850 PF13426 PAS domain CHQ57_08855 PF00849 RNA pseudouridylate synthase CHQ57_08865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_08870 PF04209 homogentisate 1,2-dioxygenase CHQ57_08880 PF02798 Glutathione S-transferase, N-terminal domain CHQ57_08880 PF14497 Glutathione S-transferase, C-terminal domain CHQ57_08890 PF00733 Asparagine synthase CHQ57_08890 PF13537 Glutamine amidotransferase domain CHQ57_08900 PF00999 Sodium/hydrogen exchanger family CHQ57_08905 PF13344 Haloacid dehalogenase-like hydrolase CHQ57_08910 PF00962 Adenosine/AMP deaminase CHQ57_08915 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHQ57_08920 PF03741 Integral membrane protein TerC family CHQ57_08920 PF03471 Transporter associated domain CHQ57_08930 PF02913 FAD linked oxidases, C-terminal domain CHQ57_08930 PF01565 FAD binding domain CHQ57_08930 PF13183 4Fe-4S dicluster domain CHQ57_08940 PF03061 Thioesterase superfamily CHQ57_08945 PF00271 Helicase conserved C-terminal domain CHQ57_08945 PF03880 DbpA RNA binding domain CHQ57_08945 PF00270 DEAD/DEAH box helicase CHQ57_08955 PF00563 EAL domain CHQ57_08955 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_08955 PF03707 Bacterial signalling protein N terminal repeat CHQ57_08955 PF13188 PAS domain CHQ57_08960 PF13726 Na+-H+ antiporter family CHQ57_08960 PF03553 Na+/H+ antiporter family CHQ57_08970 PF00929 Exonuclease CHQ57_08975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_08975 PF12729 Four helix bundle sensory module for signal transduction CHQ57_08975 PF00672 HAMP domain CHQ57_08980 PF00691 OmpA family CHQ57_08980 PF18393 MotY N-terminal domain CHQ57_08985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_08990 PF00633 Helix-hairpin-helix motif CHQ57_08990 PF10576 Iron-sulfur binding domain of endonuclease III CHQ57_08990 PF00730 HhH-GPD superfamily base excision DNA repair protein CHQ57_08995 PF02508 Rnf-Nqr subunit, membrane protein CHQ57_09000 PF04205 FMN-binding domain CHQ57_09005 PF03116 NQR2, RnfD, RnfE family CHQ57_09010 PF13375 RnfC Barrel sandwich hybrid domain CHQ57_09010 PF12838 4Fe-4S dicluster domain CHQ57_09010 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHQ57_09010 PF10531 SLBB domain CHQ57_09015 PF04060 Putative Fe-S cluster CHQ57_09020 PF02508 Rnf-Nqr subunit, membrane protein CHQ57_09025 PF00892 EamA-like transporter family CHQ57_09035 PF13426 PAS domain CHQ57_09035 PF08447 PAS fold CHQ57_09035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_09040 PF12241 Trans-2-enoyl-CoA reductase catalytic region CHQ57_09040 PF07055 Enoyl reductase FAD binding domain CHQ57_09040 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CHQ57_09045 PF03606 C4-dicarboxylate anaerobic carrier CHQ57_09050 PF00155 Aminotransferase class I and II CHQ57_09060 PF00462 Glutaredoxin CHQ57_09065 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CHQ57_09070 PF00271 Helicase conserved C-terminal domain CHQ57_09070 PF04851 Type III restriction enzyme, res subunit CHQ57_09075 PF00529 HlyD membrane-fusion protein of T1SS CHQ57_09075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_09080 PF11742 Protein of unknown function (DUF3302) CHQ57_09085 PF02554 Carbon starvation protein CstA CHQ57_09090 PF00072 Response regulator receiver domain CHQ57_09090 PF04397 LytTr DNA-binding domain CHQ57_09095 PF07694 5TMR of 5TMR-LYT CHQ57_09095 PF06580 Histidine kinase CHQ57_09100 PF01966 HD domain CHQ57_09105 PF00465 Iron-containing alcohol dehydrogenase CHQ57_09105 PF00171 Aldehyde dehydrogenase family CHQ57_09115 PF01914 MarC family integral membrane protein CHQ57_09120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_09125 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09130 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09130 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_09135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_09135 PF00005 ABC transporter CHQ57_09145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_09145 PF00005 ABC transporter CHQ57_09150 PF03741 Integral membrane protein TerC family CHQ57_09155 PF00842 Alanine racemase, C-terminal domain CHQ57_09155 PF01168 Alanine racemase, N-terminal domain CHQ57_09165 PF00375 Sodium:dicarboxylate symporter family CHQ57_09180 PF01979 Amidohydrolase family CHQ57_09190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_09190 PF00672 HAMP domain CHQ57_09195 PF01230 HIT domain CHQ57_09230 PF07549 SecD/SecF GG Motif CHQ57_09230 PF13721 SecD export protein N-terminal TM region CHQ57_09230 PF02355 Protein export membrane protein CHQ57_09235 PF07549 SecD/SecF GG Motif CHQ57_09235 PF02355 Protein export membrane protein CHQ57_09240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_09240 PF13426 PAS domain CHQ57_09240 PF08447 PAS fold CHQ57_09245 PF13358 DDE superfamily endonuclease CHQ57_09245 PF13592 Winged helix-turn helix CHQ57_09255 PF00361 Proton-conducting membrane transporter CHQ57_09260 PF00361 Proton-conducting membrane transporter CHQ57_09270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CHQ57_09275 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CHQ57_09280 PF12838 4Fe-4S dicluster domain CHQ57_09285 PF00146 NADH dehydrogenase CHQ57_09290 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHQ57_09290 PF00384 Molybdopterin oxidoreductase CHQ57_09290 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CHQ57_09295 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CHQ57_09295 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CHQ57_09305 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHQ57_09305 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHQ57_09310 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHQ57_09315 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CHQ57_09335 PF04536 TPM domain CHQ57_09345 PF03411 Penicillin-insensitive murein endopeptidase CHQ57_09350 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_09360 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09365 PF00005 ABC transporter CHQ57_09375 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CHQ57_09380 PF00248 Aldo/keto reductase family CHQ57_09390 PF00106 short chain dehydrogenase CHQ57_09400 PF00690 Cation transporter/ATPase, N-terminus CHQ57_09400 PF00689 Cation transporting ATPase, C-terminus CHQ57_09405 PF00582 Universal stress protein family CHQ57_09410 PF01212 Beta-eliminating lyase CHQ57_09420 PF00072 Response regulator receiver domain CHQ57_09425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_09425 PF03466 LysR substrate binding domain CHQ57_09435 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_09435 PF13188 PAS domain CHQ57_09435 PF03707 Bacterial signalling protein N terminal repeat CHQ57_09435 PF00563 EAL domain CHQ57_09440 PF00881 Nitroreductase family CHQ57_09455 PF07690 Major Facilitator Superfamily CHQ57_09460 PF03466 LysR substrate binding domain CHQ57_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_09465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_09465 PF03466 LysR substrate binding domain CHQ57_09470 PF00925 GTP cyclohydrolase II CHQ57_09475 PF02224 Cytidylate kinase CHQ57_09480 PF00575 S1 RNA binding domain CHQ57_09485 PF00216 Bacterial DNA-binding protein CHQ57_09495 PF18073 Rubredoxin metal binding domain CHQ57_09500 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CHQ57_09515 PF06508 Queuosine biosynthesis protein QueC CHQ57_09520 PF04055 Radical SAM superfamily CHQ57_09525 PF12843 Putative quorum-sensing-regulated virulence factor CHQ57_09530 PF01923 Cobalamin adenosyltransferase CHQ57_09535 PF00816 H-NS histone family CHQ57_09540 PF03553 Na+/H+ antiporter family CHQ57_09545 PF00265 Thymidine kinase CHQ57_09555 PF10722 Putative bacterial sensory transduction regulator CHQ57_09570 PF13495 Phage integrase, N-terminal SAM-like domain CHQ57_09570 PF00589 Phage integrase family CHQ57_09595 PF00109 Beta-ketoacyl synthase, N-terminal domain CHQ57_09595 PF02801 Beta-ketoacyl synthase, C-terminal domain CHQ57_09600 PF00106 short chain dehydrogenase CHQ57_09605 PF00873 AcrB/AcrD/AcrF family CHQ57_09625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CHQ57_09625 PF00929 Exonuclease CHQ57_09625 PF07733 Bacterial DNA polymerase III alpha NTPase domain CHQ57_09625 PF14579 Helix-hairpin-helix motif CHQ57_09625 PF02811 PHP domain CHQ57_09630 PF00571 CBS domain CHQ57_09635 PF14583 Oligogalacturonate lyase CHQ57_09640 PF01614 Bacterial transcriptional regulator CHQ57_09640 PF09339 IclR helix-turn-helix domain CHQ57_09645 PF10688 Bacterial inner membrane protein CHQ57_09655 PF04962 KduI/IolB family CHQ57_09670 PF00294 pfkB family carbohydrate kinase CHQ57_09675 PF01081 KDPG and KHG aldolase CHQ57_09680 PF07883 Cupin domain CHQ57_09685 PF06178 Oligogalacturonate-specific porin protein (KdgM) CHQ57_09690 PF13229 Right handed beta helix region CHQ57_09695 PF00544 Pectate lyase CHQ57_09700 PF01168 Alanine racemase, N-terminal domain CHQ57_09700 PF00842 Alanine racemase, C-terminal domain CHQ57_09710 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CHQ57_09710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHQ57_09715 PF13247 4Fe-4S dicluster domain CHQ57_09720 PF03916 Polysulphide reductase, NrfD CHQ57_09725 PF00374 Nickel-dependent hydrogenase CHQ57_09730 PF01750 Hydrogenase maturation protease CHQ57_09735 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CHQ57_09740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_09745 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09750 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_09750 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_09755 PF00005 ABC transporter CHQ57_09760 PF00005 ABC transporter CHQ57_09765 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHQ57_09770 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CHQ57_09775 PF00586 AIR synthase related protein, N-terminal domain CHQ57_09775 PF02769 AIR synthase related protein, C-terminal domain CHQ57_09780 PF01924 Hydrogenase formation hypA family CHQ57_09785 PF01455 HupF/HypC family CHQ57_09790 PF07503 HypF finger CHQ57_09790 PF01300 Telomere recombination CHQ57_09790 PF17788 HypF Kae1-like domain CHQ57_09790 PF00708 Acylphosphatase CHQ57_09795 PF00009 Elongation factor Tu GTP binding domain CHQ57_09795 PF09105 Elongation factor SelB, winged helix CHQ57_09795 PF09107 Elongation factor SelB, winged helix CHQ57_09795 PF09106 Elongation factor SelB, winged helix CHQ57_09795 PF03144 Elongation factor Tu domain 2 CHQ57_09800 PF03841 L-seryl-tRNA selenium transferase CHQ57_09800 PF12390 Selenocysteine synthase N terminal CHQ57_09810 PF07450 Formate hydrogenlyase maturation protein HycH CHQ57_09815 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CHQ57_09820 PF12838 4Fe-4S dicluster domain CHQ57_09825 PF00374 Nickel-dependent hydrogenase CHQ57_09825 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CHQ57_09825 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CHQ57_09830 PF00146 NADH dehydrogenase CHQ57_09835 PF00361 Proton-conducting membrane transporter CHQ57_09840 PF12798 4Fe-4S binding domain CHQ57_09840 PF00037 4Fe-4S binding domain CHQ57_09860 PF13247 4Fe-4S dicluster domain CHQ57_09860 PF12800 4Fe-4S binding domain CHQ57_09875 PF00158 Sigma-54 interaction domain CHQ57_09875 PF02954 Bacterial regulatory protein, Fis family CHQ57_09875 PF01590 GAF domain CHQ57_09880 PF02634 FdhD/NarQ family CHQ57_09885 PF02132 RecR protein CHQ57_09885 PF13662 Toprim domain CHQ57_09890 PF00183 Hsp90 protein CHQ57_09890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_09900 PF05191 Adenylate kinase, active site lid CHQ57_09905 PF00762 Ferrochelatase CHQ57_09910 PF01124 MAPEG family CHQ57_09920 PF00294 pfkB family carbohydrate kinase CHQ57_09925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_09925 PF00672 HAMP domain CHQ57_09925 PF17200 Single Cache domain 2 CHQ57_09940 PF00563 EAL domain CHQ57_09940 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_09940 PF03707 Bacterial signalling protein N terminal repeat CHQ57_09945 PF00483 Nucleotidyl transferase CHQ57_09955 PF07273 Protein of unknown function (DUF1439) CHQ57_09960 PF00425 chorismate binding enzyme CHQ57_09965 PF13193 AMP-binding enzyme C-terminal domain CHQ57_09965 PF00501 AMP-binding enzyme CHQ57_09970 PF00550 Phosphopantetheine attachment site CHQ57_09970 PF00857 Isochorismatase family CHQ57_09975 PF00975 Thioesterase domain CHQ57_09975 PF00668 Condensation domain CHQ57_09975 PF13193 AMP-binding enzyme C-terminal domain CHQ57_09975 PF00501 AMP-binding enzyme CHQ57_09975 PF00550 Phosphopantetheine attachment site CHQ57_09985 PF13193 AMP-binding enzyme C-terminal domain CHQ57_09985 PF00550 Phosphopantetheine attachment site CHQ57_09985 PF07993 Male sterility protein CHQ57_09985 PF00668 Condensation domain CHQ57_09985 PF00501 AMP-binding enzyme CHQ57_09990 PF00501 AMP-binding enzyme CHQ57_09990 PF00668 Condensation domain CHQ57_09990 PF00550 Phosphopantetheine attachment site CHQ57_09990 PF00975 Thioesterase domain CHQ57_09990 PF13193 AMP-binding enzyme C-terminal domain CHQ57_10000 PF01497 Periplasmic binding protein CHQ57_10005 PF17837 4'-phosphopantetheinyl transferase N-terminal domain CHQ57_10005 PF01648 4'-phosphopantetheinyl transferase superfamily CHQ57_10010 PF00005 ABC transporter CHQ57_10015 PF01032 FecCD transport family CHQ57_10020 PF01032 FecCD transport family CHQ57_10025 PF07715 TonB-dependent Receptor Plug Domain CHQ57_10025 PF00593 TonB dependent receptor CHQ57_10040 PF11143 Protein of unknown function (DUF2919) CHQ57_10045 PF01544 CorA-like Mg2+ transporter protein CHQ57_10055 PF01012 Electron transfer flavoprotein domain CHQ57_10060 PF01012 Electron transfer flavoprotein domain CHQ57_10060 PF00766 Electron transfer flavoprotein FAD-binding domain CHQ57_10065 PF00266 Aminotransferase class-V CHQ57_10070 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHQ57_10075 PF00793 DAHP synthetase I family CHQ57_10080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_10080 PF00672 HAMP domain CHQ57_10085 PF04055 Radical SAM superfamily CHQ57_10090 PF13742 OB-fold nucleic acid binding domain CHQ57_10090 PF02601 Exonuclease VII, large subunit CHQ57_10095 PF01292 Prokaryotic cytochrome b561 CHQ57_10100 PF02472 Biopolymer transport protein ExbD/TolR CHQ57_10105 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_10115 PF00478 IMP dehydrogenase / GMP reductase domain CHQ57_10115 PF00571 CBS domain CHQ57_10120 PF00958 GMP synthase C terminal domain CHQ57_10120 PF00117 Glutamine amidotransferase class-I CHQ57_10120 PF02540 NAD synthase CHQ57_10130 PF07693 KAP family P-loop domain CHQ57_10135 PF13592 Winged helix-turn helix CHQ57_10135 PF13358 DDE superfamily endonuclease CHQ57_10140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CHQ57_10140 PF12833 Helix-turn-helix domain CHQ57_10140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CHQ57_10140 PF02805 Metal binding domain of Ada CHQ57_10165 PF05724 Thiopurine S-methyltransferase (TPMT) CHQ57_10170 PF05193 Peptidase M16 inactive domain CHQ57_10170 PF00675 Insulinase (Peptidase family M16) CHQ57_10170 PF16187 Middle or third domain of peptidase_M16 CHQ57_10175 PF00300 Histidine phosphatase superfamily (branch 1) CHQ57_10185 PF00892 EamA-like transporter family CHQ57_10190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_10195 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CHQ57_10215 PF01575 MaoC like domain CHQ57_10245 PF03992 Antibiotic biosynthesis monooxygenase CHQ57_10250 PF00465 Iron-containing alcohol dehydrogenase CHQ57_10265 PF01928 CYTH domain CHQ57_10275 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CHQ57_10290 PF00270 DEAD/DEAH box helicase CHQ57_10290 PF00271 Helicase conserved C-terminal domain CHQ57_10295 PF00255 Glutathione peroxidase CHQ57_10305 PF07478 D-ala D-ala ligase C-terminus CHQ57_10305 PF01820 D-ala D-ala ligase N-terminus CHQ57_10320 PF01925 Sulfite exporter TauE/SafE CHQ57_10325 PF03466 LysR substrate binding domain CHQ57_10325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_10335 PF12833 Helix-turn-helix domain CHQ57_10335 PF14525 AraC-binding-like domain CHQ57_10340 PF11398 Protein of unknown function (DUF2813) CHQ57_10350 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CHQ57_10350 PF00128 Alpha amylase, catalytic domain CHQ57_10400 PF02789 Cytosol aminopeptidase family, N-terminal domain CHQ57_10400 PF00883 Cytosol aminopeptidase family, catalytic domain CHQ57_10405 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_10410 PF01546 Peptidase family M20/M25/M40 CHQ57_10410 PF07687 Peptidase dimerisation domain CHQ57_10425 PF00365 Phosphofructokinase CHQ57_10430 PF00121 Triosephosphate isomerase CHQ57_10435 PF02698 DUF218 domain CHQ57_10445 PF17192 MukF middle domain CHQ57_10445 PF17193 MukF C-terminal domain CHQ57_10445 PF03882 MukF winged-helix domain CHQ57_10450 PF04288 MukE-like family CHQ57_10455 PF04310 MukB N-terminal CHQ57_10455 PF16330 MukB hinge domain CHQ57_10460 PF05036 Sporulation related domain CHQ57_10460 PF03330 Lytic transglycolase CHQ57_10480 PF01327 Polypeptide deformylase CHQ57_10520 PF07152 YaeQ protein CHQ57_10535 PF00005 ABC transporter CHQ57_10540 PF01032 FecCD transport family CHQ57_10555 PF05433 Glycine zipper 2TM domain CHQ57_10565 PF03606 C4-dicarboxylate anaerobic carrier CHQ57_10570 PF00501 AMP-binding enzyme CHQ57_10570 PF13193 AMP-binding enzyme C-terminal domain CHQ57_10575 PF13280 WYL domain CHQ57_10575 PF08279 HTH domain CHQ57_10585 PF01502 Phosphoribosyl-AMP cyclohydrolase CHQ57_10585 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CHQ57_10590 PF00977 Histidine biosynthesis protein CHQ57_10595 PF00072 Response regulator receiver domain CHQ57_10595 PF01627 Hpt domain CHQ57_10595 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_10595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_10605 PF00072 Response regulator receiver domain CHQ57_10610 PF00977 Histidine biosynthesis protein CHQ57_10615 PF00117 Glutamine amidotransferase class-I CHQ57_10620 PF00475 Imidazoleglycerol-phosphate dehydratase CHQ57_10620 PF08645 Polynucleotide kinase 3 phosphatase CHQ57_10625 PF00155 Aminotransferase class I and II CHQ57_10630 PF00815 Histidinol dehydrogenase CHQ57_10635 PF08029 HisG, C-terminal domain CHQ57_10635 PF01634 ATP phosphoribosyltransferase CHQ57_10645 PF04851 Type III restriction enzyme, res subunit CHQ57_10645 PF13307 Helicase C-terminal domain CHQ57_10650 PF00814 Glycoprotease family CHQ57_10660 PF12697 Alpha/beta hydrolase family CHQ57_10665 PF00501 AMP-binding enzyme CHQ57_10665 PF13193 AMP-binding enzyme C-terminal domain CHQ57_10670 PF01612 3'-5' exonuclease CHQ57_10670 PF00570 HRDC domain CHQ57_10685 PF01207 Dihydrouridine synthase (Dus) CHQ57_10690 PF04304 Protein of unknown function (DUF454) CHQ57_10695 PF00156 Phosphoribosyl transferase domain CHQ57_10700 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CHQ57_10700 PF12170 DNA polymerase III tau subunit V interacting with alpha CHQ57_10700 PF12169 DNA polymerase III subunits gamma and tau domain III CHQ57_10705 PF02575 YbaB/EbfC DNA-binding family CHQ57_10715 PF00196 Bacterial regulatory proteins, luxR family CHQ57_10715 PF00072 Response regulator receiver domain CHQ57_10725 PF00271 Helicase conserved C-terminal domain CHQ57_10725 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CHQ57_10725 PF04408 Helicase associated domain (HA2) CHQ57_10725 PF11898 Domain of unknown function (DUF3418) CHQ57_10725 PF00270 DEAD/DEAH box helicase CHQ57_10735 PF01386 Ribosomal L25p family CHQ57_10740 PF00753 Metallo-beta-lactamase superfamily CHQ57_10750 PF00586 AIR synthase related protein, N-terminal domain CHQ57_10750 PF02769 AIR synthase related protein, C-terminal domain CHQ57_10765 PF17785 PUA-like domain CHQ57_10765 PF10672 S-adenosylmethionine-dependent methyltransferase CHQ57_10770 PF00672 HAMP domain CHQ57_10770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_10770 PF12729 Four helix bundle sensory module for signal transduction CHQ57_10775 PF00708 Acylphosphatase CHQ57_10780 PF13417 Glutathione S-transferase, N-terminal domain CHQ57_10780 PF00043 Glutathione S-transferase, C-terminal domain CHQ57_10785 PF08264 Anticodon-binding domain of tRNA CHQ57_10785 PF01588 Putative tRNA binding domain CHQ57_10785 PF09334 tRNA synthetases class I (M) CHQ57_10790 PF10609 NUBPL iron-transfer P-loop NTPase CHQ57_10795 PF00485 Phosphoribulokinase / Uridine kinase family CHQ57_10800 PF00692 dUTPase CHQ57_10805 PF01384 Phosphate transporter family CHQ57_10810 PF00575 S1 RNA binding domain CHQ57_10810 PF10150 Ribonuclease E/G family CHQ57_10810 PF12111 Polyribonucleotide phosphorylase C terminal CHQ57_10815 PF00849 RNA pseudouridylate synthase CHQ57_10815 PF01479 S4 domain CHQ57_10820 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_10825 PF02545 Maf-like protein CHQ57_10830 PF02620 Large ribosomal RNA subunit accumulation protein YceD CHQ57_10835 PF01783 Ribosomal L32p protein family CHQ57_10840 PF02504 Fatty acid synthesis protein CHQ57_10845 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CHQ57_10845 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CHQ57_10850 PF00698 Acyl transferase domain CHQ57_10860 PF00550 Phosphopantetheine attachment site CHQ57_10865 PF00109 Beta-ketoacyl synthase, N-terminal domain CHQ57_10865 PF02801 Beta-ketoacyl synthase, C-terminal domain CHQ57_10870 PF01063 Amino-transferase class IV CHQ57_10875 PF02618 YceG-like family CHQ57_10880 PF02223 Thymidylate kinase CHQ57_10885 PF09115 DNA polymerase III, delta subunit, C terminal CHQ57_10890 PF01026 TatD related DNase CHQ57_10895 PF00589 Phage integrase family CHQ57_10905 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CHQ57_10905 PF01189 16S rRNA methyltransferase RsmB/F CHQ57_10905 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CHQ57_10910 PF02470 MlaD protein CHQ57_10915 PF04403 Paraquat-inducible protein A CHQ57_10930 PF00285 Citrate synthase, C-terminal domain CHQ57_10935 PF03972 MmgE/PrpD family CHQ57_10975 PF00106 short chain dehydrogenase CHQ57_10985 PF07130 YebG protein CHQ57_10995 PF13654 AAA domain CHQ57_10995 PF05362 Lon protease (S16) C-terminal proteolytic domain CHQ57_11000 PF07977 FabA-like domain CHQ57_11005 PF04957 Ribosome modulation factor CHQ57_11025 PF10672 S-adenosylmethionine-dependent methyltransferase CHQ57_11025 PF02926 THUMP domain CHQ57_11025 PF01170 Putative RNA methylase family UPF0020 CHQ57_11030 PF07126 Cell-division protein ZapC CHQ57_11035 PF01180 Dihydroorotate dehydrogenase CHQ57_11040 PF05088 Bacterial NAD-glutamate dehydrogenase CHQ57_11050 PF11940 Domain of unknown function (DUF3458) Ig-like fold CHQ57_11050 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CHQ57_11050 PF01433 Peptidase family M1 domain CHQ57_11065 PF03572 Peptidase family S41 CHQ57_11065 PF17804 Tail specific protease N-terminal domain CHQ57_11065 PF11818 C-terminal domain of tail specific protease (DUF3340) CHQ57_11065 PF00595 PDZ domain CHQ57_11070 PF04352 ProQ/FINO family CHQ57_11070 PF17516 ProQ C-terminal domain CHQ57_11075 PF13185 GAF domain CHQ57_11085 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHQ57_11100 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CHQ57_11100 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHQ57_11110 PF00403 Heavy-metal-associated domain CHQ57_11125 PF13545 Crp-like helix-turn-helix domain CHQ57_11125 PF00027 Cyclic nucleotide-binding domain CHQ57_11130 PF00582 Universal stress protein family CHQ57_11135 PF01171 PP-loop family CHQ57_11150 PF02798 Glutathione S-transferase, N-terminal domain CHQ57_11150 PF00043 Glutathione S-transferase, C-terminal domain CHQ57_11155 PF05025 RbsD / FucU transport protein family CHQ57_11160 PF00005 ABC transporter CHQ57_11165 PF02653 Branched-chain amino acid transport system / permease component CHQ57_11170 PF13407 Periplasmic binding protein domain CHQ57_11175 PF00294 pfkB family carbohydrate kinase CHQ57_11180 PF00356 Bacterial regulatory proteins, lacI family CHQ57_11185 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_11185 PF17152 Periplasmic sensor domain CHQ57_11195 PF02146 Sir2 family CHQ57_11215 PF00216 Bacterial DNA-binding protein CHQ57_11220 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CHQ57_11220 PF03484 tRNA synthetase B5 domain CHQ57_11220 PF03147 Ferredoxin-fold anticodon binding domain CHQ57_11220 PF03483 B3/4 domain CHQ57_11220 PF01588 Putative tRNA binding domain CHQ57_11225 PF01409 tRNA synthetases class II core domain (F) CHQ57_11225 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CHQ57_11230 PF00453 Ribosomal protein L20 CHQ57_11235 PF01632 Ribosomal protein L35 CHQ57_11240 PF05198 Translation initiation factor IF-3, N-terminal domain CHQ57_11240 PF00707 Translation initiation factor IF-3, C-terminal domain CHQ57_11245 PF03129 Anticodon binding domain CHQ57_11245 PF02824 TGS domain CHQ57_11245 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHQ57_11245 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHQ57_11255 PF04055 Radical SAM superfamily CHQ57_11260 PF03989 DNA gyrase C-terminal domain, beta-propeller CHQ57_11260 PF00521 DNA gyrase/topoisomerase IV, subunit A CHQ57_11270 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_11275 PF03477 ATP cone domain CHQ57_11275 PF02867 Ribonucleotide reductase, barrel domain CHQ57_11275 PF00317 Ribonucleotide reductase, all-alpha domain CHQ57_11280 PF00268 Ribonucleotide reductase, small chain CHQ57_11285 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_11290 PF03562 MltA specific insert domain CHQ57_11290 PF06725 3D domain CHQ57_11295 PF06945 Protein of unknown function (DUF1289) CHQ57_11300 PF02378 Phosphotransferase system, EIIC CHQ57_11300 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_11305 PF00294 pfkB family carbohydrate kinase CHQ57_11310 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_11310 PF00381 PTS HPr component phosphorylation site CHQ57_11315 PF00356 Bacterial regulatory proteins, lacI family CHQ57_11315 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHQ57_11320 PF03222 Tryptophan/tyrosine permease family CHQ57_11335 PF00271 Helicase conserved C-terminal domain CHQ57_11335 PF00270 DEAD/DEAH box helicase CHQ57_11345 PF01264 Chorismate synthase CHQ57_11350 PF05175 Methyltransferase small domain CHQ57_11355 PF01713 Smr domain CHQ57_11360 PF08448 PAS fold CHQ57_11360 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_11380 PF00704 Glycosyl hydrolases family 18 CHQ57_11380 PF08329 Chitinase A, N-terminal domain CHQ57_11390 PF03831 PhnA domain CHQ57_11390 PF08274 PhnA Zinc-Ribbon CHQ57_11395 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHQ57_11395 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_11395 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHQ57_11400 PF00108 Thiolase, N-terminal domain CHQ57_11400 PF02803 Thiolase, C-terminal domain CHQ57_11405 PF07726 ATPase family associated with various cellular activities (AAA) CHQ57_11405 PF17863 AAA lid domain CHQ57_11410 PF01882 Protein of unknown function DUF58 CHQ57_11420 PF13519 von Willebrand factor type A domain CHQ57_11420 PF17863 AAA lid domain CHQ57_11420 PF07728 AAA domain (dynein-related subfamily) CHQ57_11435 PF04542 Sigma-70 region 2 CHQ57_11435 PF08281 Sigma-70, region 4 CHQ57_11445 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CHQ57_11450 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CHQ57_11455 PF00563 EAL domain CHQ57_11455 PF08668 HDOD domain CHQ57_11460 PF00108 Thiolase, N-terminal domain CHQ57_11460 PF02803 Thiolase, C-terminal domain CHQ57_11465 PF00376 MerR family regulatory protein CHQ57_11465 PF09278 MerR, DNA binding CHQ57_11470 PF00375 Sodium:dicarboxylate symporter family CHQ57_11475 PF06865 Pyrimidine/purine nucleoside phosphorylase CHQ57_11480 PF03313 Serine dehydratase alpha chain CHQ57_11480 PF03315 Serine dehydratase beta chain CHQ57_11485 PF03315 Serine dehydratase beta chain CHQ57_11485 PF03313 Serine dehydratase alpha chain CHQ57_11490 PF13406 Transglycosylase SLT domain CHQ57_11495 PF05166 YcgL domain CHQ57_11500 PF03775 Septum formation inhibitor MinC, C-terminal domain CHQ57_11500 PF05209 Septum formation inhibitor MinC, N-terminal domain CHQ57_11505 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CHQ57_11510 PF03776 Septum formation topological specificity factor MinE CHQ57_11515 PF04269 Protein of unknown function, DUF440 CHQ57_11520 PF00912 Transglycosylase CHQ57_11525 PF04269 Protein of unknown function, DUF440 CHQ57_11535 PF13509 S1 domain CHQ57_11535 PF17783 CvfB-like winged helix domain CHQ57_11560 PF02525 Flavodoxin-like fold CHQ57_11565 PF00892 EamA-like transporter family CHQ57_11570 PF02222 ATP-grasp domain CHQ57_11575 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_11585 PF00677 Lumazine binding domain CHQ57_11590 PF06786 Uncharacterised protein family (UPF0253) CHQ57_11595 PF01554 MatE CHQ57_11630 PF03104 DNA polymerase family B, exonuclease domain CHQ57_11630 PF00136 DNA polymerase family B CHQ57_11640 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_11655 PF03279 Bacterial lipid A biosynthesis acyltransferase CHQ57_11660 PF03279 Bacterial lipid A biosynthesis acyltransferase CHQ57_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_11670 PF03466 LysR substrate binding domain CHQ57_11675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CHQ57_11675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHQ57_11680 PF01261 Xylose isomerase-like TIM barrel CHQ57_11685 PF03466 LysR substrate binding domain CHQ57_11685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_11700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_11700 PF03466 LysR substrate binding domain CHQ57_11705 PF13407 Periplasmic binding protein domain CHQ57_11710 PF00005 ABC transporter CHQ57_11715 PF02653 Branched-chain amino acid transport system / permease component CHQ57_11720 PF02653 Branched-chain amino acid transport system / permease component CHQ57_11725 PF00563 EAL domain CHQ57_11725 PF01590 GAF domain CHQ57_11725 PF00360 Phytochrome region CHQ57_11725 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_11730 PF04972 BON domain CHQ57_11765 PF00665 Integrase core domain CHQ57_11765 PF13936 Helix-turn-helix domain CHQ57_11780 PF00589 Phage integrase family CHQ57_11780 PF14659 Phage integrase, N-terminal SAM-like domain CHQ57_11805 PF02796 Helix-turn-helix domain of resolvase CHQ57_11805 PF00239 Resolvase, N terminal domain CHQ57_11815 PF04002 RadC-like JAB domain CHQ57_11825 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CHQ57_11825 PF18766 SWI2/SNF2 ATPase CHQ57_11825 PF11867 Domain of unknown function (DUF3387) CHQ57_11855 PF01925 Sulfite exporter TauE/SafE CHQ57_11860 PF13520 Amino acid permease CHQ57_11870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CHQ57_11870 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CHQ57_11875 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_11880 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_11885 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHQ57_11885 PF02770 Acyl-CoA dehydrogenase, middle domain CHQ57_11885 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHQ57_11890 PF00171 Aldehyde dehydrogenase family CHQ57_11895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHQ57_11895 PF02770 Acyl-CoA dehydrogenase, middle domain CHQ57_11895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHQ57_11905 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_11910 PF00289 Biotin carboxylase, N-terminal domain CHQ57_11910 PF00364 Biotin-requiring enzyme CHQ57_11910 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHQ57_11910 PF02785 Biotin carboxylase C-terminal domain CHQ57_11915 PF00682 HMGL-like CHQ57_11920 PF09278 MerR, DNA binding CHQ57_11920 PF00376 MerR family regulatory protein CHQ57_11935 PF01184 GPR1/FUN34/yaaH family CHQ57_11940 PF06167 Glucose-regulated metallo-peptidase M90 CHQ57_11945 PF00583 Acetyltransferase (GNAT) family CHQ57_11950 PF01235 Sodium:alanine symporter family CHQ57_11955 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_11955 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHQ57_11955 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHQ57_11965 PF00571 CBS domain CHQ57_11990 PF00005 ABC transporter CHQ57_11990 PF12848 ABC transporter CHQ57_11995 PF13145 PPIC-type PPIASE domain CHQ57_12000 PF00216 Bacterial DNA-binding protein CHQ57_12005 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHQ57_12005 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_12005 PF05362 Lon protease (S16) C-terminal proteolytic domain CHQ57_12010 PF06689 ClpX C4-type zinc finger CHQ57_12010 PF10431 C-terminal, D2-small domain, of ClpB protein CHQ57_12010 PF07724 AAA domain (Cdc48 subfamily) CHQ57_12015 PF00574 Clp protease CHQ57_12020 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_12020 PF05698 Bacterial trigger factor protein (TF) C-terminus CHQ57_12020 PF05697 Bacterial trigger factor protein (TF) CHQ57_12040 PF02687 FtsX-like permease family CHQ57_12040 PF12704 MacB-like periplasmic core domain CHQ57_12045 PF00005 ABC transporter CHQ57_12050 PF02687 FtsX-like permease family CHQ57_12050 PF12704 MacB-like periplasmic core domain CHQ57_12060 PF17757 UvrB interaction domain CHQ57_12060 PF03461 TRCF domain CHQ57_12060 PF00271 Helicase conserved C-terminal domain CHQ57_12060 PF00270 DEAD/DEAH box helicase CHQ57_12060 PF02559 CarD-like/TRCF domain CHQ57_12085 PF00664 ABC transporter transmembrane region CHQ57_12085 PF00005 ABC transporter CHQ57_12090 PF00005 ABC transporter CHQ57_12090 PF00664 ABC transporter transmembrane region CHQ57_12095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHQ57_12095 PF01627 Hpt domain CHQ57_12095 PF00672 HAMP domain CHQ57_12095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_12095 PF00072 Response regulator receiver domain CHQ57_12095 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_12100 PF00085 Thioredoxin CHQ57_12105 PF00939 Sodium:sulfate symporter transmembrane region CHQ57_12110 PF00343 Carbohydrate phosphorylase CHQ57_12140 PF00425 chorismate binding enzyme CHQ57_12140 PF04715 Anthranilate synthase component I, N terminal region CHQ57_12145 PF00293 NUDIX domain CHQ57_12150 PF03222 Tryptophan/tyrosine permease family CHQ57_12155 PF00375 Sodium:dicarboxylate symporter family CHQ57_12160 PF09382 RQC domain CHQ57_12160 PF00270 DEAD/DEAH box helicase CHQ57_12160 PF00570 HRDC domain CHQ57_12160 PF00271 Helicase conserved C-terminal domain CHQ57_12160 PF16124 RecQ zinc-binding CHQ57_12175 PF04285 Protein of unknown function (DUF444) CHQ57_12180 PF04293 SpoVR like protein CHQ57_12185 PF07840 FadR C-terminal domain CHQ57_12185 PF00392 Bacterial regulatory proteins, gntR family CHQ57_12190 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CHQ57_12195 PF02600 Disulfide bond formation protein DsbB CHQ57_12200 PF09335 SNARE associated Golgi protein CHQ57_12210 PF04851 Type III restriction enzyme, res subunit CHQ57_12210 PF12344 Ultra-violet resistance protein B CHQ57_12210 PF17757 UvrB interaction domain CHQ57_12210 PF00271 Helicase conserved C-terminal domain CHQ57_12210 PF02151 UvrB/uvrC motif CHQ57_12225 PF02080 TrkA-C domain CHQ57_12225 PF06826 Predicted Permease Membrane Region CHQ57_12230 PF01464 Transglycosylase SLT domain CHQ57_12230 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_12245 PF01970 Tripartite tricarboxylate transporter TctA family CHQ57_12250 PF00072 Response regulator receiver domain CHQ57_12250 PF12431 Transcriptional regulator CHQ57_12255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_12255 PF00989 PAS fold CHQ57_12255 PF17203 Single cache domain 3 CHQ57_12255 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CHQ57_12265 PF17200 Single Cache domain 2 CHQ57_12265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_12265 PF00672 HAMP domain CHQ57_12270 PF02810 SEC-C motif CHQ57_12275 PF01266 FAD dependent oxidoreductase CHQ57_12275 PF04324 BFD-like [2Fe-2S] binding domain CHQ57_12280 PF00890 FAD binding domain CHQ57_12285 PF02754 Cysteine-rich domain CHQ57_12285 PF13183 4Fe-4S dicluster domain CHQ57_12290 PF02335 Cytochrome c552 CHQ57_12295 PF13435 Cytochrome c554 and c-prime CHQ57_12295 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CHQ57_12300 PF00037 4Fe-4S binding domain CHQ57_12300 PF13247 4Fe-4S dicluster domain CHQ57_12305 PF03916 Polysulphide reductase, NrfD CHQ57_12310 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CHQ57_12310 PF01578 Cytochrome C assembly protein CHQ57_12315 PF08534 Redoxin CHQ57_12320 PF03918 Cytochrome C biogenesis protein CHQ57_12330 PF00768 D-alanyl-D-alanine carboxypeptidase CHQ57_12335 PF01212 Beta-eliminating lyase CHQ57_12345 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CHQ57_12350 PF01266 FAD dependent oxidoreductase CHQ57_12360 PF07969 Amidohydrolase family CHQ57_12375 PF01717 Cobalamin-independent synthase, Catalytic domain CHQ57_12375 PF08267 Cobalamin-independent synthase, N-terminal domain CHQ57_12380 PF03466 LysR substrate binding domain CHQ57_12380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_12390 PF07715 TonB-dependent Receptor Plug Domain CHQ57_12390 PF00593 TonB dependent receptor CHQ57_12395 PF12833 Helix-turn-helix domain CHQ57_12395 PF06445 GyrI-like small molecule binding domain CHQ57_12400 PF00106 short chain dehydrogenase CHQ57_12405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_12405 PF03466 LysR substrate binding domain CHQ57_12410 PF13460 NAD(P)H-binding CHQ57_12420 PF01053 Cys/Met metabolism PLP-dependent enzyme CHQ57_12425 PF00675 Insulinase (Peptidase family M16) CHQ57_12425 PF05193 Peptidase M16 inactive domain CHQ57_12430 PF02774 Semialdehyde dehydrogenase, dimerisation domain CHQ57_12430 PF01118 Semialdehyde dehydrogenase, NAD binding domain CHQ57_12435 PF18381 YcaO cyclodehydratase C-terminal domain CHQ57_12435 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CHQ57_12440 PF01226 Formate/nitrite transporter CHQ57_12445 PF01228 Glycine radical CHQ57_12445 PF02901 Pyruvate formate lyase-like CHQ57_12450 PF03692 Putative zinc- or iron-chelating domain CHQ57_12465 PF02629 CoA binding domain CHQ57_12465 PF00549 CoA-ligase CHQ57_12470 PF08442 ATP-grasp domain CHQ57_12470 PF00549 CoA-ligase CHQ57_12475 PF02817 e3 binding domain CHQ57_12475 PF00364 Biotin-requiring enzyme CHQ57_12475 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHQ57_12480 PF16078 2-oxoglutarate dehydrogenase N-terminus CHQ57_12480 PF02779 Transketolase, pyrimidine binding domain CHQ57_12480 PF00676 Dehydrogenase E1 component CHQ57_12480 PF16870 2-oxoglutarate dehydrogenase C-terminal CHQ57_12485 PF13085 2Fe-2S iron-sulfur cluster binding domain CHQ57_12490 PF00890 FAD binding domain CHQ57_12490 PF02910 Fumarate reductase flavoprotein C-term CHQ57_12495 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHQ57_12500 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CHQ57_12505 PF00285 Citrate synthase, C-terminal domain CHQ57_12520 PF00109 Beta-ketoacyl synthase, N-terminal domain CHQ57_12520 PF02801 Beta-ketoacyl synthase, C-terminal domain CHQ57_12525 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CHQ57_12525 PF01266 FAD dependent oxidoreductase CHQ57_12535 PF03606 C4-dicarboxylate anaerobic carrier CHQ57_12550 PF01863 Protein of unknown function DUF45 CHQ57_12565 PF01197 Ribosomal protein L31 CHQ57_12570 PF00444 Ribosomal protein L36 CHQ57_12575 PF02887 Pyruvate kinase, alpha/beta domain CHQ57_12575 PF00224 Pyruvate kinase, barrel domain CHQ57_12580 PF00367 phosphotransferase system, EIIB CHQ57_12580 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHQ57_12585 PF08532 Beta-galactosidase trimerisation domain CHQ57_12585 PF02449 Beta-galactosidase CHQ57_12585 PF08533 Beta-galactosidase C-terminal domain CHQ57_12590 PF07745 Glycosyl hydrolase family 53 CHQ57_12595 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_12600 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_12610 PF17912 MalK OB fold domain CHQ57_12610 PF00005 ABC transporter CHQ57_12620 PF00672 HAMP domain CHQ57_12620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_12630 PF07745 Glycosyl hydrolase family 53 CHQ57_12635 PF07745 Glycosyl hydrolase family 53 CHQ57_12640 PF02264 LamB porin CHQ57_12645 PF00356 Bacterial regulatory proteins, lacI family CHQ57_12650 PF16363 GDP-mannose 4,6 dehydratase CHQ57_12655 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CHQ57_12655 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CHQ57_12660 PF00288 GHMP kinases N terminal domain CHQ57_12660 PF10509 Galactokinase galactose-binding signature CHQ57_12660 PF08544 GHMP kinases C terminal CHQ57_12665 PF12833 Helix-turn-helix domain CHQ57_12665 PF02311 AraC-like ligand binding domain CHQ57_12670 PF02653 Branched-chain amino acid transport system / permease component CHQ57_12675 PF00005 ABC transporter CHQ57_12680 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHQ57_12685 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CHQ57_12690 PF00596 Class II Aldolase and Adducin N-terminal domain CHQ57_12695 PF02610 L-arabinose isomerase CHQ57_12695 PF11762 L-arabinose isomerase C-terminal domain CHQ57_12700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_12700 PF03466 LysR substrate binding domain CHQ57_12705 PF00155 Aminotransferase class I and II CHQ57_12710 PF00795 Carbon-nitrogen hydrolase CHQ57_12715 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_12725 PF00929 Exonuclease CHQ57_12725 PF08411 Exonuclease C-terminal CHQ57_12740 PF03788 LrgA family CHQ57_12745 PF04172 LrgB-like family CHQ57_12750 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CHQ57_12750 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHQ57_12755 PF00501 AMP-binding enzyme CHQ57_12760 PF08891 YfcL protein CHQ57_12770 PF00691 OmpA family CHQ57_12775 PF17152 Periplasmic sensor domain CHQ57_12775 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_12785 PF00158 Sigma-54 interaction domain CHQ57_12785 PF18024 Helix-turn-helix domain CHQ57_12790 PF01329 Pterin 4 alpha carbinolamine dehydratase CHQ57_12795 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CHQ57_12800 PF05128 Domain of unknown function (DUF697) CHQ57_12805 PF04317 YcjX-like family, DUF463 CHQ57_12815 PF06667 Phage shock protein B CHQ57_12820 PF04012 PspA/IM30 family CHQ57_12825 PF00158 Sigma-54 interaction domain CHQ57_12825 PF02954 Bacterial regulatory protein, Fis family CHQ57_12830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_12835 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_12840 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_12840 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_12845 PF00005 ABC transporter CHQ57_12845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_12850 PF00005 ABC transporter CHQ57_12855 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CHQ57_12860 PF00156 Phosphoribosyl transferase domain CHQ57_12865 PF02674 Colicin V production protein CHQ57_12870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CHQ57_12870 PF02403 Seryl-tRNA synthetase N-terminal domain CHQ57_12875 PF12002 MgsA AAA+ ATPase C terminal CHQ57_12875 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_12875 PF16193 AAA C-terminal domain CHQ57_12880 PF03548 Outer membrane lipoprotein carrier protein LolA CHQ57_12890 PF01037 Lrp/AsnC ligand binding domain CHQ57_12895 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CHQ57_12895 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CHQ57_12900 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_12905 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_12905 PF17158 Membrane-associated sensor, integral membrane domain CHQ57_12910 PF05433 Glycine zipper 2TM domain CHQ57_12915 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CHQ57_12920 PF04377 Arginine-tRNA-protein transferase, C terminus CHQ57_12920 PF04376 Arginine-tRNA-protein transferase, N terminus CHQ57_12925 PF01176 Translation initiation factor 1A / IF-1 CHQ57_12930 PF02861 Clp amino terminal domain, pathogenicity island component CHQ57_12930 PF07724 AAA domain (Cdc48 subfamily) CHQ57_12930 PF17871 AAA lid domain CHQ57_12930 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_12930 PF10431 C-terminal, D2-small domain, of ClpB protein CHQ57_12935 PF02617 ATP-dependent Clp protease adaptor protein ClpS CHQ57_12940 PF00313 'Cold-shock' DNA-binding domain CHQ57_12945 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CHQ57_12945 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CHQ57_12985 PF05362 Lon protease (S16) C-terminal proteolytic domain CHQ57_12985 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_12985 PF02190 ATP-dependent protease La (LON) substrate-binding domain CHQ57_13030 PF13737 Transposase DDE domain CHQ57_13050 PF13737 Transposase DDE domain CHQ57_13125 PF13737 Transposase DDE domain CHQ57_13155 PF00313 'Cold-shock' DNA-binding domain CHQ57_13220 PF01740 STAS domain CHQ57_13220 PF00916 Sulfate permease family CHQ57_13255 PF03239 Iron permease FTR1 family CHQ57_13260 PF01593 Flavin containing amine oxidoreductase CHQ57_13280 PF07690 Major Facilitator Superfamily CHQ57_13285 PF03600 Citrate transporter CHQ57_13295 PF00005 ABC transporter CHQ57_13315 PF02308 MgtC family CHQ57_13330 PF00561 alpha/beta hydrolase fold CHQ57_13350 PF01625 Peptide methionine sulfoxide reductase CHQ57_13355 PF00696 Amino acid kinase family CHQ57_13355 PF00583 Acetyltransferase (GNAT) family CHQ57_13360 PF00696 Amino acid kinase family CHQ57_13360 PF01842 ACT domain CHQ57_13370 PF00884 Sulfatase CHQ57_13375 PF17676 LD-carboxypeptidase C-terminal domain CHQ57_13375 PF02016 LD-carboxypeptidase N-terminal domain CHQ57_13385 PF01906 Putative heavy-metal-binding CHQ57_13390 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_13395 PF05728 Uncharacterised protein family (UPF0227) CHQ57_13400 PF01432 Peptidase family M3 CHQ57_13400 PF08439 Oligopeptidase F CHQ57_13405 PF08439 Oligopeptidase F CHQ57_13405 PF01432 Peptidase family M3 CHQ57_13410 PF05661 Protein of unknown function (DUF808) CHQ57_13420 PF01548 Transposase CHQ57_13420 PF02371 Transposase IS116/IS110/IS902 family CHQ57_13425 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CHQ57_13425 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CHQ57_13425 PF02769 AIR synthase related protein, C-terminal domain CHQ57_13430 PF01464 Transglycosylase SLT domain CHQ57_13430 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_13440 PF07191 zinc-ribbons CHQ57_13445 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CHQ57_13445 PF01926 50S ribosome-binding GTPase CHQ57_13450 PF13360 PQQ-like domain CHQ57_13455 PF09976 Tetratricopeptide repeat-like domain CHQ57_13460 PF03129 Anticodon binding domain CHQ57_13460 PF13393 Histidyl-tRNA synthetase CHQ57_13465 PF04551 GcpE protein CHQ57_13470 PF13464 Domain of unknown function (DUF4115) CHQ57_13480 PF04055 Radical SAM superfamily CHQ57_13485 PF00334 Nucleoside diphosphate kinase CHQ57_13490 PF12404 Peptidase CHQ57_13490 PF00883 Cytosol aminopeptidase family, catalytic domain CHQ57_13495 PF12404 Peptidase CHQ57_13495 PF00883 Cytosol aminopeptidase family, catalytic domain CHQ57_13500 PF00111 2Fe-2S iron-sulfur cluster binding domain CHQ57_13505 PF00012 Hsp70 protein CHQ57_13510 PF07743 HSCB C-terminal oligomerisation domain CHQ57_13510 PF00226 DnaJ domain CHQ57_13515 PF01521 Iron-sulphur cluster biosynthesis CHQ57_13520 PF01592 NifU-like N terminal domain CHQ57_13525 PF00266 Aminotransferase class-V CHQ57_13530 PF02082 Transcriptional regulator CHQ57_13535 PF00588 SpoU rRNA Methylase family CHQ57_13560 PF13181 Tetratricopeptide repeat CHQ57_13560 PF07719 Tetratricopeptide repeat CHQ57_13570 PF02355 Protein export membrane protein CHQ57_13570 PF07549 SecD/SecF GG Motif CHQ57_13575 PF13721 SecD export protein N-terminal TM region CHQ57_13575 PF02355 Protein export membrane protein CHQ57_13575 PF07549 SecD/SecF GG Motif CHQ57_13580 PF02699 Preprotein translocase subunit CHQ57_13585 PF01702 Queuine tRNA-ribosyltransferase CHQ57_13590 PF02547 Queuosine biosynthesis protein CHQ57_13595 PF00571 CBS domain CHQ57_13600 PF00578 AhpC/TSA family CHQ57_13600 PF10417 C-terminal domain of 1-Cys peroxiredoxin CHQ57_13605 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_13605 PF13192 Thioredoxin domain CHQ57_13720 PF01609 Transposase DDE domain CHQ57_13720 PF05598 Transposase domain (DUF772) CHQ57_13725 PF00589 Phage integrase family CHQ57_13725 PF02899 Phage integrase, N-terminal SAM-like domain CHQ57_13745 PF01066 CDP-alcohol phosphatidyltransferase CHQ57_13750 PF08459 UvrC Helix-hairpin-helix N-terminal CHQ57_13750 PF02151 UvrB/uvrC motif CHQ57_13750 PF01541 GIY-YIG catalytic domain CHQ57_13755 PF00196 Bacterial regulatory proteins, luxR family CHQ57_13755 PF00072 Response regulator receiver domain CHQ57_13760 PF02348 Cytidylyltransferase CHQ57_13765 PF03966 Trm112p-like protein CHQ57_13770 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CHQ57_13775 PF00664 ABC transporter transmembrane region CHQ57_13775 PF00005 ABC transporter CHQ57_13780 PF00753 Metallo-beta-lactamase superfamily CHQ57_13780 PF03772 Competence protein CHQ57_13795 PF05872 Bacterial protein of unknown function (DUF853) CHQ57_13800 PF00155 Aminotransferase class I and II CHQ57_13810 PF13609 Gram-negative porin CHQ57_13815 PF13307 Helicase C-terminal domain CHQ57_13815 PF06733 DEAD_2 CHQ57_13825 PF00850 Histone deacetylase domain CHQ57_13830 PF01926 50S ribosome-binding GTPase CHQ57_13835 PF00245 Alkaline phosphatase CHQ57_13840 PF00245 Alkaline phosphatase CHQ57_13855 PF14760 Rnk N-terminus CHQ57_13855 PF01272 Transcription elongation factor, GreA/GreB, C-term CHQ57_13860 PF00072 Response regulator receiver domain CHQ57_13860 PF00196 Bacterial regulatory proteins, luxR family CHQ57_13865 PF05231 MASE1 CHQ57_13865 PF07730 Histidine kinase CHQ57_13865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_13870 PF07690 Major Facilitator Superfamily CHQ57_13875 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_13875 PF08448 PAS fold CHQ57_13880 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_13885 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_13890 PF00005 ABC transporter CHQ57_13895 PF04116 Fatty acid hydroxylase superfamily CHQ57_13900 PF13520 Amino acid permease CHQ57_13915 PF03471 Transporter associated domain CHQ57_13915 PF01595 Cyclin M transmembrane N-terminal domain CHQ57_13915 PF00571 CBS domain CHQ57_13920 PF01895 PhoU domain CHQ57_13930 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_13935 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_13940 PF14437 MafB19-like deaminase CHQ57_13950 PF01274 Malate synthase CHQ57_13955 PF00463 Isocitrate lyase family CHQ57_13960 PF00308 Bacterial dnaA protein CHQ57_13975 PF02769 AIR synthase related protein, C-terminal domain CHQ57_13975 PF00586 AIR synthase related protein, N-terminal domain CHQ57_13980 PF00551 Formyl transferase CHQ57_13985 PF01784 NIF3 (NGG1p interacting factor 3) CHQ57_13990 PF02954 Bacterial regulatory protein, Fis family CHQ57_13990 PF00158 Sigma-54 interaction domain CHQ57_13995 PF00989 PAS fold CHQ57_13995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_13995 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_14000 PF00072 Response regulator receiver domain CHQ57_14000 PF02954 Bacterial regulatory protein, Fis family CHQ57_14000 PF00158 Sigma-54 interaction domain CHQ57_14015 PF02503 Polyphosphate kinase middle domain CHQ57_14015 PF13090 Polyphosphate kinase C-terminal domain 2 CHQ57_14015 PF17941 Polyphosphate kinase C-terminal domain 1 CHQ57_14015 PF13089 Polyphosphate kinase N-terminal domain CHQ57_14020 PF02541 Ppx/GppA phosphatase family CHQ57_14025 PF00571 CBS domain CHQ57_14025 PF01769 Divalent cation transporter CHQ57_14025 PF03448 MgtE intracellular N domain CHQ57_14040 PF10135 Rod binding protein CHQ57_14040 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CHQ57_14045 PF02119 Flagellar P-ring protein CHQ57_14050 PF02107 Flagellar L-ring protein CHQ57_14055 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHQ57_14055 PF00460 Flagella basal body rod protein CHQ57_14060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHQ57_14060 PF00460 Flagella basal body rod protein CHQ57_14065 PF07559 Flagellar basal body protein FlaE CHQ57_14065 PF00460 Flagella basal body rod protein CHQ57_14065 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHQ57_14075 PF00460 Flagella basal body rod protein CHQ57_14075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CHQ57_14080 PF00460 Flagella basal body rod protein CHQ57_14085 PF01739 CheR methyltransferase, SAM binding domain CHQ57_14085 PF03705 CheR methyltransferase, all-alpha domain CHQ57_14090 PF01584 CheW-like domain CHQ57_14090 PF00072 Response regulator receiver domain CHQ57_14110 PF12850 Calcineurin-like phosphoesterase superfamily domain CHQ57_14115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_14125 PF00849 RNA pseudouridylate synthase CHQ57_14125 PF01479 S4 domain CHQ57_14130 PF01966 HD domain CHQ57_14130 PF11871 Domain of unknown function (DUF3391) CHQ57_14140 PF00892 EamA-like transporter family CHQ57_14145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_14170 PF00313 'Cold-shock' DNA-binding domain CHQ57_14175 PF02817 e3 binding domain CHQ57_14175 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHQ57_14175 PF00364 Biotin-requiring enzyme CHQ57_14180 PF02780 Transketolase, C-terminal domain CHQ57_14180 PF02779 Transketolase, pyrimidine binding domain CHQ57_14185 PF00676 Dehydrogenase E1 component CHQ57_14190 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CHQ57_14200 PF05472 DNA replication terminus site-binding protein (Ter protein) CHQ57_14205 PF04434 SWIM zinc finger CHQ57_14205 PF00176 SNF2 family N-terminal domain CHQ57_14205 PF00271 Helicase conserved C-terminal domain CHQ57_14210 PF04337 Protein of unknown function, DUF480 CHQ57_14220 PF06082 Exopolysaccharide biosynthesis protein YbjH CHQ57_14250 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CHQ57_14250 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CHQ57_14250 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CHQ57_14255 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHQ57_14255 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHQ57_14255 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHQ57_14255 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHQ57_14260 PF00483 Nucleotidyl transferase CHQ57_14260 PF01050 Mannose-6-phosphate isomerase CHQ57_14290 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CHQ57_14295 PF02911 Formyl transferase, C-terminal domain CHQ57_14295 PF00551 Formyl transferase CHQ57_14300 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CHQ57_14305 PF00483 Nucleotidyl transferase CHQ57_14310 PF04321 RmlD substrate binding domain CHQ57_14315 PF16363 GDP-mannose 4,6 dehydratase CHQ57_14345 PF04002 RadC-like JAB domain CHQ57_14405 PF02321 Outer membrane efflux protein CHQ57_14415 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_14415 PF00529 HlyD membrane-fusion protein of T1SS CHQ57_14420 PF00440 Bacterial regulatory proteins, tetR family CHQ57_14420 PF08361 MAATS-type transcriptional repressor, C-terminal region CHQ57_14440 PF01609 Transposase DDE domain CHQ57_14440 PF13006 Insertion element 4 transposase N-terminal CHQ57_14445 PF00849 RNA pseudouridylate synthase CHQ57_14445 PF01479 S4 domain CHQ57_14450 PF04079 Segregation and condensation complex subunit ScpB CHQ57_14455 PF02616 Segregation and condensation protein ScpA CHQ57_14460 PF01300 Telomere recombination CHQ57_14465 PF02811 PHP domain CHQ57_14470 PF00425 chorismate binding enzyme CHQ57_14470 PF04715 Anthranilate synthase component I, N terminal region CHQ57_14475 PF02885 Glycosyl transferase family, helical bundle domain CHQ57_14475 PF00591 Glycosyl transferase family, a/b domain CHQ57_14475 PF00117 Glutamine amidotransferase class-I CHQ57_14480 PF00591 Glycosyl transferase family, a/b domain CHQ57_14480 PF02885 Glycosyl transferase family, helical bundle domain CHQ57_14485 PF00218 Indole-3-glycerol phosphate synthase CHQ57_14485 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CHQ57_14490 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_14495 PF00290 Tryptophan synthase alpha chain CHQ57_14505 PF00210 Ferritin-like domain CHQ57_14530 PF13737 Transposase DDE domain CHQ57_14545 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_14545 PF02378 Phosphotransferase system, EIIC CHQ57_14545 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_14550 PF07690 Major Facilitator Superfamily CHQ57_14555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_14565 PF00849 RNA pseudouridylate synthase CHQ57_14570 PF00293 NUDIX domain CHQ57_14580 PF04356 Protein of unknown function (DUF489) CHQ57_14585 PF00206 Lyase CHQ57_14585 PF08328 Adenylosuccinate lyase C-terminal CHQ57_14590 PF08007 Cupin superfamily protein CHQ57_14595 PF13508 Acetyltransferase (GNAT) domain CHQ57_14605 PF13417 Glutathione S-transferase, N-terminal domain CHQ57_14610 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CHQ57_14610 PF01243 Pyridoxamine 5'-phosphate oxidase CHQ57_14625 PF01029 NusB family CHQ57_14625 PF01189 16S rRNA methyltransferase RsmB/F CHQ57_14630 PF13006 Insertion element 4 transposase N-terminal CHQ57_14630 PF01609 Transposase DDE domain CHQ57_14635 PF00462 Glutaredoxin CHQ57_14640 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHQ57_14640 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHQ57_14645 PF04333 MlaA lipoprotein CHQ57_14650 PF03918 Cytochrome C biogenesis protein CHQ57_14655 PF03918 Cytochrome C biogenesis protein CHQ57_14660 PF08534 Redoxin CHQ57_14665 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CHQ57_14665 PF01578 Cytochrome C assembly protein CHQ57_14670 PF03100 CcmE CHQ57_14675 PF04995 Heme exporter protein D (CcmD) CHQ57_14680 PF01578 Cytochrome C assembly protein CHQ57_14685 PF03379 CcmB protein CHQ57_14690 PF00005 ABC transporter CHQ57_14700 PF01584 CheW-like domain CHQ57_14710 PF13614 AAA domain CHQ57_14715 PF00691 OmpA family CHQ57_14715 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHQ57_14720 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_14725 PF00072 Response regulator receiver domain CHQ57_14725 PF01339 CheB methylesterase CHQ57_14730 PF02895 Signal transducing histidine kinase, homodimeric domain CHQ57_14730 PF01584 CheW-like domain CHQ57_14730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_14730 PF01627 Hpt domain CHQ57_14730 PF07194 P2 response regulator binding domain CHQ57_14735 PF04344 Chemotaxis phosphatase, CheZ CHQ57_14740 PF00072 Response regulator receiver domain CHQ57_14745 PF04545 Sigma-70, region 4 CHQ57_14745 PF04539 Sigma-70 region 3 CHQ57_14745 PF04542 Sigma-70 region 2 CHQ57_14750 PF10609 NUBPL iron-transfer P-loop NTPase CHQ57_14755 PF00448 SRP54-type protein, GTPase domain CHQ57_14760 PF00771 FHIPEP family CHQ57_14765 PF01312 FlhB HrpN YscU SpaS Family CHQ57_14770 PF01311 Bacterial export proteins, family 1 CHQ57_14775 PF01313 Bacterial export proteins, family 3 CHQ57_14780 PF00813 FliP family CHQ57_14785 PF04347 Flagellar biosynthesis protein, FliO CHQ57_14790 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHQ57_14795 PF02154 Flagellar motor switch protein FliM CHQ57_14795 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CHQ57_14815 PF18269 T3SS EscN ATPase C-terminal domain CHQ57_14815 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_14825 PF01706 FliG C-terminal domain CHQ57_14825 PF14842 FliG N-terminal domain CHQ57_14825 PF14841 FliG middle domain CHQ57_14830 PF08345 Flagellar M-ring protein C-terminal CHQ57_14830 PF01514 Secretory protein of YscJ/FliF family CHQ57_14835 PF02049 Flagellar hook-basal body complex protein FliE CHQ57_14850 PF02001 Protein of unknown function DUF134 CHQ57_14885 PF05598 Transposase domain (DUF772) CHQ57_14885 PF01609 Transposase DDE domain CHQ57_14895 PF13592 Winged helix-turn helix CHQ57_14895 PF13358 DDE superfamily endonuclease CHQ57_14905 PF04055 Radical SAM superfamily CHQ57_14905 PF18693 TRAM domain CHQ57_14905 PF00919 Uncharacterized protein family UPF0004 CHQ57_14910 PF03350 Uncharacterized protein family, UPF0114 CHQ57_14915 PF01595 Cyclin M transmembrane N-terminal domain CHQ57_14915 PF00571 CBS domain CHQ57_14920 PF02673 Bacitracin resistance protein BacA CHQ57_14930 PF13592 Winged helix-turn helix CHQ57_14930 PF13358 DDE superfamily endonuclease CHQ57_14955 PF13737 Transposase DDE domain CHQ57_14960 PF11713 Peptidase C80 family CHQ57_14960 PF11647 Membrane Localization Domain CHQ57_14960 PF12146 Serine aminopeptidase, S33 CHQ57_14960 PF16671 Actin cross-linking domain CHQ57_14960 PF07634 RtxA repeat CHQ57_14965 PF02794 RTX toxin acyltransferase family CHQ57_14975 PF03412 Peptidase C39 family CHQ57_14975 PF00005 ABC transporter CHQ57_14975 PF00664 ABC transporter transmembrane region CHQ57_14985 PF00664 ABC transporter transmembrane region CHQ57_14985 PF00005 ABC transporter CHQ57_14985 PF03412 Peptidase C39 family CHQ57_14990 PF00072 Response regulator receiver domain CHQ57_14990 PF00486 Transcriptional regulatory protein, C terminal CHQ57_14995 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CHQ57_14995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_14995 PF00989 PAS fold CHQ57_14995 PF17203 Single cache domain 3 CHQ57_15000 PF01609 Transposase DDE domain CHQ57_15000 PF13006 Insertion element 4 transposase N-terminal CHQ57_15005 PF02685 Glucokinase CHQ57_15010 PF01418 Helix-turn-helix domain, rpiR family CHQ57_15010 PF01380 SIS domain CHQ57_15015 PF02887 Pyruvate kinase, alpha/beta domain CHQ57_15015 PF00224 Pyruvate kinase, barrel domain CHQ57_15030 PF01548 Transposase CHQ57_15030 PF02371 Transposase IS116/IS110/IS902 family CHQ57_15045 PF13936 Helix-turn-helix domain CHQ57_15045 PF00665 Integrase core domain CHQ57_15050 PF01527 Transposase CHQ57_15065 PF00440 Bacterial regulatory proteins, tetR family CHQ57_15070 PF02770 Acyl-CoA dehydrogenase, middle domain CHQ57_15070 PF09317 Domain of unknown function (DUF1974) CHQ57_15070 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CHQ57_15070 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CHQ57_15090 PF00180 Isocitrate/isopropylmalate dehydrogenase CHQ57_15095 PF12833 Helix-turn-helix domain CHQ57_15100 PF01238 Phosphomannose isomerase type I CHQ57_15125 PF00155 Aminotransferase class I and II CHQ57_15130 PF00367 phosphotransferase system, EIIB CHQ57_15130 PF02378 Phosphotransferase system, EIIC CHQ57_15135 PF00356 Bacterial regulatory proteins, lacI family CHQ57_15135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CHQ57_15150 PF00561 alpha/beta hydrolase fold CHQ57_15155 PF07690 Major Facilitator Superfamily CHQ57_15160 PF01040 UbiA prenyltransferase family CHQ57_15170 PF00115 Cytochrome C and Quinol oxidase polypeptide I CHQ57_15175 PF06481 COX Aromatic Rich Motif CHQ57_15175 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CHQ57_15185 PF00034 Cytochrome c CHQ57_15185 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CHQ57_15215 PF00127 Copper binding proteins, plastocyanin/azurin family CHQ57_15220 PF02424 ApbE family CHQ57_15235 PF03372 Endonuclease/Exonuclease/phosphatase family CHQ57_15240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_15270 PF00529 HlyD membrane-fusion protein of T1SS CHQ57_15270 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_15275 PF00873 AcrB/AcrD/AcrF family CHQ57_15285 PF03099 Biotin/lipoate A/B protein ligase family CHQ57_15285 PF10437 Bacterial lipoate protein ligase C-terminus CHQ57_15290 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_15290 PF00563 EAL domain CHQ57_15290 PF03707 Bacterial signalling protein N terminal repeat CHQ57_15295 PF00873 AcrB/AcrD/AcrF family CHQ57_15310 PF04143 Sulphur transport CHQ57_15330 PF02308 MgtC family CHQ57_15335 PF01235 Sodium:alanine symporter family CHQ57_15340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CHQ57_15340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CHQ57_15345 PF01699 Sodium/calcium exchanger protein CHQ57_15350 PF08534 Redoxin CHQ57_15350 PF00462 Glutaredoxin CHQ57_15360 PF00293 NUDIX domain CHQ57_15380 PF00005 ABC transporter CHQ57_15385 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CHQ57_15385 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CHQ57_15395 PF03932 CutC family CHQ57_15400 PF00480 ROK family CHQ57_15410 PF01435 Peptidase family M48 CHQ57_15415 PF12849 PBP superfamily domain CHQ57_15420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_15420 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_15420 PF11808 Phosphate regulon sensor protein PhoR CHQ57_15420 PF00989 PAS fold CHQ57_15425 PF00486 Transcriptional regulatory protein, C terminal CHQ57_15425 PF00072 Response regulator receiver domain CHQ57_15430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CHQ57_15435 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_15440 PF00158 Sigma-54 interaction domain CHQ57_15440 PF02954 Bacterial regulatory protein, Fis family CHQ57_15440 PF01590 GAF domain CHQ57_15445 PF00171 Aldehyde dehydrogenase family CHQ57_15455 PF00892 EamA-like transporter family CHQ57_15465 PF00248 Aldo/keto reductase family CHQ57_15475 PF12431 Transcriptional regulator CHQ57_15475 PF00072 Response regulator receiver domain CHQ57_15480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_15480 PF00989 PAS fold CHQ57_15480 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CHQ57_15480 PF17203 Single cache domain 3 CHQ57_15485 PF03949 Malic enzyme, NAD binding domain CHQ57_15485 PF00390 Malic enzyme, N-terminal domain CHQ57_15490 PF03390 2-hydroxycarboxylate transporter family CHQ57_15500 PF01047 MarR family CHQ57_15505 PF00529 HlyD membrane-fusion protein of T1SS CHQ57_15505 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_15525 PF01679 Proteolipid membrane potential modulator CHQ57_15540 PF03477 ATP cone domain CHQ57_15540 PF13597 Anaerobic ribonucleoside-triphosphate reductase CHQ57_15550 PF12826 Helix-hairpin-helix motif CHQ57_15550 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CHQ57_15550 PF03120 NAD-dependent DNA ligase OB-fold domain CHQ57_15550 PF01653 NAD-dependent DNA ligase adenylation domain CHQ57_15550 PF00533 BRCA1 C Terminus (BRCT) domain CHQ57_15555 PF04354 ZipA, C-terminal FtsZ-binding domain CHQ57_15560 PF02463 RecF/RecN/SMC N terminal domain CHQ57_15560 PF06470 SMC proteins Flexible Hinge Domain CHQ57_15570 PF03458 UPF0126 domain CHQ57_15580 PF05951 Bacterial protein of unknown function (DUF882) CHQ57_15585 PF03734 L,D-transpeptidase catalytic domain CHQ57_15585 PF01471 Putative peptidoglycan binding domain CHQ57_15600 PF00535 Glycosyl transferase family 2 CHQ57_15615 PF00579 tRNA synthetases class I (W and Y) CHQ57_15620 PF08525 Opacity-associated protein A N-terminal motif CHQ57_15620 PF01551 Peptidase family M23 CHQ57_15620 PF01476 LysM domain CHQ57_15630 PF01042 Endoribonuclease L-PSP CHQ57_15640 PF02779 Transketolase, pyrimidine binding domain CHQ57_15640 PF02780 Transketolase, C-terminal domain CHQ57_15640 PF00456 Transketolase, thiamine diphosphate binding domain CHQ57_15645 PF02773 S-adenosylmethionine synthetase, C-terminal domain CHQ57_15645 PF02772 S-adenosylmethionine synthetase, central domain CHQ57_15645 PF00438 S-adenosylmethionine synthetase, N-terminal domain CHQ57_15650 PF17283 SprT-like zinc ribbon domain CHQ57_15650 PF10263 SprT-like family CHQ57_15655 PF04231 Endonuclease I CHQ57_15660 PF04452 RNA methyltransferase CHQ57_15665 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CHQ57_15665 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CHQ57_15670 PF13006 Insertion element 4 transposase N-terminal CHQ57_15670 PF01609 Transposase DDE domain CHQ57_15675 PF12729 Four helix bundle sensory module for signal transduction CHQ57_15675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_15675 PF00672 HAMP domain CHQ57_15680 PF02622 Uncharacterized ACR, COG1678 CHQ57_15685 PF03652 Holliday junction resolvase CHQ57_15690 PF00144 Beta-lactamase CHQ57_15695 PF07726 ATPase family associated with various cellular activities (AAA) CHQ57_15695 PF17863 AAA lid domain CHQ57_15705 PF13559 Domain of unknown function (DUF4129) CHQ57_15705 PF01841 Transglutaminase-like superfamily CHQ57_15705 PF11992 Domain of unknown function (DUF3488) CHQ57_15710 PF01235 Sodium:alanine symporter family CHQ57_15715 PF00923 Transaldolase/Fructose-6-phosphate aldolase CHQ57_15720 PF02371 Transposase IS116/IS110/IS902 family CHQ57_15720 PF01548 Transposase CHQ57_15740 PF03167 Uracil DNA glycosylase superfamily CHQ57_15750 PF01228 Glycine radical CHQ57_15755 PF00793 DAHP synthetase I family CHQ57_15760 PF13369 Transglutaminase-like superfamily CHQ57_15770 PF13847 Methyltransferase domain CHQ57_15770 PF17827 PrmC N-terminal domain CHQ57_15775 PF00472 RF-1 domain CHQ57_15775 PF03462 PCRF domain CHQ57_15780 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CHQ57_15780 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CHQ57_15780 PF01488 Shikimate / quinate 5-dehydrogenase CHQ57_15785 PF03550 Outer membrane lipoprotein LolB CHQ57_15790 PF08544 GHMP kinases C terminal CHQ57_15790 PF00288 GHMP kinases N terminal domain CHQ57_15800 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CHQ57_15800 PF14572 Phosphoribosyl synthetase-associated domain CHQ57_15805 PF00149 Calcineurin-like phosphoesterase CHQ57_15805 PF02872 5'-nucleotidase, C-terminal domain CHQ57_15810 PF01195 Peptidyl-tRNA hydrolase CHQ57_15815 PF01926 50S ribosome-binding GTPase CHQ57_15815 PF06071 Protein of unknown function (DUF933) CHQ57_15860 PF02080 TrkA-C domain CHQ57_15860 PF03600 Citrate transporter CHQ57_15865 PF04973 Nicotinamide mononucleotide transporter CHQ57_15870 PF01048 Phosphorylase superfamily CHQ57_15890 PF00128 Alpha amylase, catalytic domain CHQ57_15890 PF16657 Maltogenic Amylase, C-terminal domain CHQ57_15905 PF12848 ABC transporter CHQ57_15905 PF00005 ABC transporter CHQ57_15910 PF07690 Major Facilitator Superfamily CHQ57_15915 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_15915 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CHQ57_15915 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CHQ57_15915 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CHQ57_15915 PF10371 Domain of unknown function CHQ57_15920 PF07690 Major Facilitator Superfamily CHQ57_15925 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_15935 PF00171 Aldehyde dehydrogenase family CHQ57_15940 PF04958 Arginine N-succinyltransferase beta subunit CHQ57_15945 PF00202 Aminotransferase class-III CHQ57_15950 PF00117 Glutamine amidotransferase class-I CHQ57_15960 PF00579 tRNA synthetases class I (W and Y) CHQ57_15965 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_15970 PF00834 Ribulose-phosphate 3 epimerase family CHQ57_15975 PF02086 D12 class N6 adenine-specific DNA methyltransferase CHQ57_15985 PF01761 3-dehydroquinate synthase CHQ57_15990 PF01202 Shikimate kinase CHQ57_15995 PF03958 Bacterial type II/III secretion system short domain CHQ57_15995 PF07660 Secretin and TonB N terminus short domain CHQ57_15995 PF00263 Bacterial type II and III secretion system protein CHQ57_15995 PF11741 AMIN domain CHQ57_16020 PF17092 Penicillin-binding protein OB-like domain CHQ57_16020 PF00905 Penicillin binding protein transpeptidase domain CHQ57_16020 PF00912 Transglycosylase CHQ57_16025 PF03466 LysR substrate binding domain CHQ57_16025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_16030 PF00672 HAMP domain CHQ57_16030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_16045 PF03466 LysR substrate binding domain CHQ57_16045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_16060 PF01551 Peptidase family M23 CHQ57_16060 PF08525 Opacity-associated protein A N-terminal motif CHQ57_16060 PF01476 LysM domain CHQ57_16070 PF12795 Mechanosensitive ion channel porin domain CHQ57_16070 PF00924 Mechanosensitive ion channel CHQ57_16070 PF12794 Mechanosensitive ion channel inner membrane domain 1 CHQ57_16075 PF03009 Glycerophosphoryl diester phosphodiesterase family CHQ57_16080 PF02743 Cache domain CHQ57_16080 PF00672 HAMP domain CHQ57_16080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_16085 PF00890 FAD binding domain CHQ57_16085 PF02910 Fumarate reductase flavoprotein C-term CHQ57_16090 PF13085 2Fe-2S iron-sulfur cluster binding domain CHQ57_16090 PF13183 4Fe-4S dicluster domain CHQ57_16095 PF02300 Fumarate reductase subunit C CHQ57_16100 PF02313 Fumarate reductase subunit D CHQ57_16110 PF06224 Winged helix DNA-binding domain CHQ57_16125 PF00501 AMP-binding enzyme CHQ57_16145 PF00072 Response regulator receiver domain CHQ57_16145 PF00486 Transcriptional regulatory protein, C terminal CHQ57_16150 PF08521 Two-component sensor kinase N-terminal CHQ57_16150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_16150 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_16170 PF00478 IMP dehydrogenase / GMP reductase domain CHQ57_16180 PF09285 Elongation factor P, C-terminal CHQ57_16180 PF08207 Elongation factor P (EF-P) KOW-like domain CHQ57_16180 PF01132 Elongation factor P (EF-P) OB domain CHQ57_16190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHQ57_16190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_16200 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_16200 PF08448 PAS fold CHQ57_16210 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_16220 PF03466 LysR substrate binding domain CHQ57_16220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_16225 PF05230 MASE2 domain CHQ57_16225 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_16230 PF00313 'Cold-shock' DNA-binding domain CHQ57_16235 PF01494 FAD binding domain CHQ57_16240 PF00919 Uncharacterized protein family UPF0004 CHQ57_16240 PF01938 TRAM domain CHQ57_16240 PF04055 Radical SAM superfamily CHQ57_16245 PF02562 PhoH-like protein CHQ57_16250 PF02130 Uncharacterized protein family UPF0054 CHQ57_16255 PF03471 Transporter associated domain CHQ57_16255 PF00571 CBS domain CHQ57_16260 PF00795 Carbon-nitrogen hydrolase CHQ57_16265 PF07295 Zinc-ribbon containing domain CHQ57_16270 PF13603 Leucyl-tRNA synthetase, Domain 2 CHQ57_16270 PF08264 Anticodon-binding domain of tRNA CHQ57_16270 PF00133 tRNA synthetases class I (I, L, M and V) CHQ57_16290 PF01467 Cytidylyltransferase-like CHQ57_16300 PF02590 Predicted SPOUT methyltransferase CHQ57_16305 PF00905 Penicillin binding protein transpeptidase domain CHQ57_16305 PF03717 Penicillin-binding Protein dimerisation domain CHQ57_16310 PF01098 Cell cycle protein CHQ57_16315 PF13406 Transglycosylase SLT domain CHQ57_16320 PF03330 Lytic transglycolase CHQ57_16320 PF05036 Sporulation related domain CHQ57_16325 PF00768 D-alanyl-D-alanine carboxypeptidase CHQ57_16325 PF07943 Penicillin-binding protein 5, C-terminal domain CHQ57_16330 PF04359 Protein of unknown function (DUF493) CHQ57_16335 PF03099 Biotin/lipoate A/B protein ligase family CHQ57_16345 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CHQ57_16345 PF04055 Radical SAM superfamily CHQ57_16355 PF13302 Acetyltransferase (GNAT) domain CHQ57_16360 PF06821 Serine hydrolase CHQ57_16365 PF02508 Rnf-Nqr subunit, membrane protein CHQ57_16375 PF17768 RecJ OB domain CHQ57_16375 PF01368 DHH family CHQ57_16375 PF02272 DHHA1 domain CHQ57_16380 PF10411 Disulfide bond isomerase protein N-terminus CHQ57_16380 PF13098 Thioredoxin-like domain CHQ57_16385 PF01741 Large-conductance mechanosensitive channel, MscL CHQ57_16390 PF00589 Phage integrase family CHQ57_16390 PF02899 Phage integrase, N-terminal SAM-like domain CHQ57_16395 PF00258 Flavodoxin CHQ57_16400 PF01523 Putative modulator of DNA gyrase CHQ57_16405 PF01523 Putative modulator of DNA gyrase CHQ57_16415 PF03734 L,D-transpeptidase catalytic domain CHQ57_16415 PF17969 L,D-transpeptidase C-terminal domain CHQ57_16425 PF02668 Taurine catabolism dioxygenase TauD, TfdA family CHQ57_16445 PF03575 Peptidase family S51 CHQ57_16450 PF10415 Fumarase C C-terminus CHQ57_16450 PF00206 Lyase CHQ57_16455 PF06476 Protein of unknown function (DUF1090) CHQ57_16460 PF02635 DsrE/DsrF-like family CHQ57_16465 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_16470 PF07690 Major Facilitator Superfamily CHQ57_16475 PF00575 S1 RNA binding domain CHQ57_16475 PF03725 3' exoribonuclease family, domain 2 CHQ57_16475 PF01138 3' exoribonuclease family, domain 1 CHQ57_16475 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CHQ57_16475 PF00013 KH domain CHQ57_16480 PF00312 Ribosomal protein S15 CHQ57_16485 PF01509 TruB family pseudouridylate synthase (N terminal domain) CHQ57_16485 PF09157 Pseudouridine synthase II TruB, C-terminal CHQ57_16485 PF16198 tRNA pseudouridylate synthase B C-terminal domain CHQ57_16490 PF02033 Ribosome-binding factor A CHQ57_16495 PF00009 Elongation factor Tu GTP binding domain CHQ57_16495 PF11987 Translation-initiation factor 2 CHQ57_16495 PF08364 Bacterial translation initiation factor IF-2 associated region CHQ57_16495 PF04760 Translation initiation factor IF-2, N-terminal region CHQ57_16500 PF13184 NusA-like KH domain CHQ57_16500 PF08529 NusA N-terminal domain CHQ57_16500 PF00575 S1 RNA binding domain CHQ57_16505 PF17384 RimP C-terminal SH3 domain CHQ57_16505 PF02576 RimP N-terminal domain CHQ57_16520 PF03840 Preprotein translocase SecG subunit CHQ57_16525 PF00121 Triosephosphate isomerase CHQ57_16530 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CHQ57_16530 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CHQ57_16530 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CHQ57_16530 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CHQ57_16535 PF00809 Pterin binding enzyme CHQ57_16540 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_16540 PF06480 FtsH Extracellular CHQ57_16540 PF01434 Peptidase family M41 CHQ57_16540 PF17862 AAA+ lid domain CHQ57_16545 PF01728 FtsJ-like methyltransferase CHQ57_16550 PF01985 CRS1 / YhbY (CRM) domain CHQ57_16560 PF01272 Transcription elongation factor, GreA/GreB, C-term CHQ57_16560 PF03449 Transcription elongation factor, N-terminal CHQ57_16570 PF09557 Domain of unknown function (DUF2382) CHQ57_16570 PF05239 PRC-barrel domain CHQ57_16580 PF13677 Membrane MotB of proton-channel complex MotA/MotB CHQ57_16580 PF00691 OmpA family CHQ57_16585 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_16590 PF02609 Exonuclease VII small subunit CHQ57_16595 PF00348 Polyprenyl synthetase CHQ57_16600 PF02779 Transketolase, pyrimidine binding domain CHQ57_16600 PF02780 Transketolase, C-terminal domain CHQ57_16600 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CHQ57_16605 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_16605 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_16615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_16620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_16620 PF00005 ABC transporter CHQ57_16625 PF04608 Phosphatidylglycerophosphatase A CHQ57_16635 PF01029 NusB family CHQ57_16640 PF00885 6,7-dimethyl-8-ribityllumazine synthase CHQ57_16645 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CHQ57_16645 PF00925 GTP cyclohydrolase II CHQ57_16650 PF00677 Lumazine binding domain CHQ57_16655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CHQ57_16655 PF01872 RibD C-terminal domain CHQ57_16660 PF03477 ATP cone domain CHQ57_16675 PF00464 Serine hydroxymethyltransferase CHQ57_16690 PF02613 Nitrate reductase delta subunit CHQ57_16710 PF00563 EAL domain CHQ57_16710 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_16710 PF03707 Bacterial signalling protein N terminal repeat CHQ57_16720 PF13193 AMP-binding enzyme C-terminal domain CHQ57_16720 PF00501 AMP-binding enzyme CHQ57_16720 PF16177 Acetyl-coenzyme A synthetase N-terminus CHQ57_16725 PF01220 Dehydroquinase class II CHQ57_16730 PF00364 Biotin-requiring enzyme CHQ57_16735 PF02785 Biotin carboxylase C-terminal domain CHQ57_16735 PF00289 Biotin carboxylase, N-terminal domain CHQ57_16735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CHQ57_16740 PF06196 Protein of unknown function (DUF997) CHQ57_16745 PF00474 Sodium:solute symporter family CHQ57_16750 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CHQ57_16750 PF00367 phosphotransferase system, EIIB CHQ57_16750 PF02378 Phosphotransferase system, EIIC CHQ57_16755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_16755 PF03466 LysR substrate binding domain CHQ57_16760 PF08240 Alcohol dehydrogenase GroES-like domain CHQ57_16760 PF00107 Zinc-binding dehydrogenase CHQ57_16770 PF13520 Amino acid permease CHQ57_16775 PF06751 Ethanolamine ammonia lyase large subunit (EutB) CHQ57_16780 PF05985 Ethanolamine ammonia-lyase light chain (EutC) CHQ57_16785 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHQ57_16785 PF01842 ACT domain CHQ57_16785 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_16790 PF12464 Maltose acetyltransferase CHQ57_16790 PF14602 Hexapeptide repeat of succinyl-transferase CHQ57_16795 PF02743 Cache domain CHQ57_16795 PF00672 HAMP domain CHQ57_16795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_16800 PF00881 Nitroreductase family CHQ57_16805 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CHQ57_16805 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_16810 PF01343 Peptidase family S49 CHQ57_16825 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHQ57_16825 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHQ57_16830 PF07023 Protein of unknown function (DUF1315) CHQ57_16835 PF17763 Glutaminase/Asparaginase C-terminal domain CHQ57_16835 PF00710 Asparaginase, N-terminal CHQ57_16840 PF03616 Sodium/glutamate symporter CHQ57_16850 PF00672 HAMP domain CHQ57_16850 PF02743 Cache domain CHQ57_16850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_16860 PF01336 OB-fold nucleic acid binding domain CHQ57_16860 PF00152 tRNA synthetases class II (D, K and N) CHQ57_16865 PF02567 Phenazine biosynthesis-like protein CHQ57_16870 PF00175 Oxidoreductase NAD-binding domain CHQ57_16870 PF00258 Flavodoxin CHQ57_16870 PF00667 FAD binding domain CHQ57_16875 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHQ57_16875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHQ57_16880 PF01507 Phosphoadenosine phosphosulfate reductase family CHQ57_16885 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CHQ57_16890 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_16895 PF00005 ABC transporter CHQ57_16895 PF00571 CBS domain CHQ57_16900 PF00186 Dihydrofolate reductase CHQ57_16905 PF12821 Threonine/Serine exporter, ThrE CHQ57_16910 PF06738 Putative threonine/serine exporter CHQ57_16920 PF00994 Probable molybdopterin binding domain CHQ57_16930 PF00109 Beta-ketoacyl synthase, N-terminal domain CHQ57_16930 PF02801 Beta-ketoacyl synthase, C-terminal domain CHQ57_16945 PF02801 Beta-ketoacyl synthase, C-terminal domain CHQ57_16945 PF00109 Beta-ketoacyl synthase, N-terminal domain CHQ57_16970 PF00221 Aromatic amino acid lyase CHQ57_16980 PF07977 FabA-like domain CHQ57_16985 PF13193 AMP-binding enzyme C-terminal domain CHQ57_16985 PF00501 AMP-binding enzyme CHQ57_16995 PF00550 Phosphopantetheine attachment site CHQ57_17000 PF00550 Phosphopantetheine attachment site CHQ57_17035 PF00034 Cytochrome c CHQ57_17035 PF03150 Di-haem cytochrome c peroxidase CHQ57_17040 PF00194 Eukaryotic-type carbonic anhydrase CHQ57_17045 PF04227 Indigoidine synthase A like protein CHQ57_17050 PF00294 pfkB family carbohydrate kinase CHQ57_17055 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_17055 PF18267 Rubredoxin NAD+ reductase C-terminal domain CHQ57_17055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHQ57_17055 PF13806 Rieske-like [2Fe-2S] domain CHQ57_17055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHQ57_17055 PF04324 BFD-like [2Fe-2S] binding domain CHQ57_17060 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_17060 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHQ57_17060 PF18267 Rubredoxin NAD+ reductase C-terminal domain CHQ57_17060 PF04324 BFD-like [2Fe-2S] binding domain CHQ57_17060 PF13806 Rieske-like [2Fe-2S] domain CHQ57_17060 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHQ57_17065 PF00005 ABC transporter CHQ57_17070 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_17085 PF14824 Sirohaem biosynthesis protein central CHQ57_17085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHQ57_17085 PF10414 Sirohaem synthase dimerisation region CHQ57_17090 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CHQ57_17090 PF01568 Molydopterin dinucleotide binding domain CHQ57_17090 PF00384 Molybdopterin oxidoreductase CHQ57_17090 PF04324 BFD-like [2Fe-2S] binding domain CHQ57_17105 PF00582 Universal stress protein family CHQ57_17115 PF00171 Aldehyde dehydrogenase family CHQ57_17120 PF00696 Amino acid kinase family CHQ57_17120 PF01472 PUA domain CHQ57_17125 PF07417 Sigma factor-binding transcriptional regulator Crl CHQ57_17135 PF00156 Phosphoribosyl transferase domain CHQ57_17150 PF07687 Peptidase dimerisation domain CHQ57_17150 PF01546 Peptidase family M20/M25/M40 CHQ57_17160 PF00005 ABC transporter CHQ57_17160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_17165 PF00005 ABC transporter CHQ57_17165 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CHQ57_17170 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_17175 PF12911 N-terminal TM domain of oligopeptide transport permease C CHQ57_17175 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_17180 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_17185 PF07715 TonB-dependent Receptor Plug Domain CHQ57_17185 PF00593 TonB dependent receptor CHQ57_17195 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_17200 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_17205 PF02472 Biopolymer transport protein ExbD/TolR CHQ57_17220 PF00704 Glycosyl hydrolases family 18 CHQ57_17220 PF06483 Chitinase C CHQ57_17255 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHQ57_17260 PF00749 tRNA synthetases class I (E and Q), catalytic domain CHQ57_17265 PF00672 HAMP domain CHQ57_17265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_17275 PF00313 'Cold-shock' DNA-binding domain CHQ57_17315 PF00929 Exonuclease CHQ57_17320 PF03193 RsgA GTPase CHQ57_17325 PF02666 Phosphatidylserine decarboxylase CHQ57_17330 PF09905 DNA-binding protein VF530 CHQ57_17350 PF00563 EAL domain CHQ57_17350 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_17350 PF03707 Bacterial signalling protein N terminal repeat CHQ57_17355 PF06877 Regulator of ribonuclease activity B CHQ57_17360 PF05547 Immune inhibitor A peptidase M6 CHQ57_17360 PF00801 PKD domain CHQ57_17385 PF00732 GMC oxidoreductase CHQ57_17385 PF05199 GMC oxidoreductase CHQ57_17390 PF00171 Aldehyde dehydrogenase family CHQ57_17395 PF00440 Bacterial regulatory proteins, tetR family CHQ57_17395 PF13977 BetI-type transcriptional repressor, C-terminal CHQ57_17400 PF00561 alpha/beta hydrolase fold CHQ57_17405 PF00005 ABC transporter CHQ57_17405 PF00664 ABC transporter transmembrane region CHQ57_17410 PF06004 Bacterial protein of unknown function (DUF903) CHQ57_17415 PF00581 Rhodanese-like domain CHQ57_17420 PF04960 Glutaminase CHQ57_17425 PF04320 Protein with unknown function (DUF469) CHQ57_17430 PF02390 Putative methyltransferase CHQ57_17435 PF04389 Peptidase family M28 CHQ57_17435 PF01483 Proprotein convertase P-domain CHQ57_17440 PF00155 Aminotransferase class I and II CHQ57_17445 PF12792 CSS motif domain associated with EAL CHQ57_17445 PF00563 EAL domain CHQ57_17450 PF01370 NAD dependent epimerase/dehydratase family CHQ57_17450 PF08338 Domain of unknown function (DUF1731) CHQ57_17460 PF00005 ABC transporter CHQ57_17465 PF13472 GDSL-like Lipase/Acylhydrolase family CHQ57_17470 PF00072 Response regulator receiver domain CHQ57_17470 PF01584 CheW-like domain CHQ57_17500 PF02080 TrkA-C domain CHQ57_17500 PF06826 Predicted Permease Membrane Region CHQ57_17505 PF03006 Haemolysin-III related CHQ57_17510 PF00282 Pyridoxal-dependent decarboxylase conserved domain CHQ57_17515 PF04279 Intracellular septation protein A CHQ57_17520 PF03795 YCII-related domain CHQ57_17525 PF00459 Inositol monophosphatase family CHQ57_17535 PF00483 Nucleotidyl transferase CHQ57_17540 PF00854 POT family CHQ57_17545 PF00072 Response regulator receiver domain CHQ57_17555 PF00672 HAMP domain CHQ57_17555 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_17555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_17560 PF00939 Sodium:sulfate symporter transmembrane region CHQ57_17590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_17595 PF02321 Outer membrane efflux protein CHQ57_17600 PF01207 Dihydrouridine synthase (Dus) CHQ57_17605 PF02954 Bacterial regulatory protein, Fis family CHQ57_17635 PF11867 Domain of unknown function (DUF3387) CHQ57_17635 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CHQ57_17635 PF18766 SWI2/SNF2 ATPase CHQ57_17645 PF07728 AAA domain (dynein-related subfamily) CHQ57_17645 PF12102 Domain of unknown function (DUF3578) CHQ57_17650 PF01420 Type I restriction modification DNA specificity domain CHQ57_17655 PF02384 N-6 DNA Methylase CHQ57_17660 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A CHQ57_17705 PF04002 RadC-like JAB domain CHQ57_17755 PF09588 YqaJ-like viral recombinase domain CHQ57_17775 PF13148 Protein of unknown function (DUF3987) CHQ57_17830 PF13411 MerR HTH family regulatory protein CHQ57_17835 PF00816 H-NS histone family CHQ57_17840 PF01695 IstB-like ATP binding protein CHQ57_17845 PF00665 Integrase core domain CHQ57_17845 PF02796 Helix-turn-helix domain of resolvase CHQ57_17855 PF01810 LysE type translocator CHQ57_17880 PF18339 RapA N-terminal Tudor like domain 1 CHQ57_17880 PF00271 Helicase conserved C-terminal domain CHQ57_17880 PF18337 RapA N-terminal Tudor like domain CHQ57_17880 PF12137 RNA polymerase recycling family C-terminal CHQ57_17880 PF00176 SNF2 family N-terminal domain CHQ57_17885 PF00849 RNA pseudouridylate synthase CHQ57_17895 PF03707 Bacterial signalling protein N terminal repeat CHQ57_17895 PF13188 PAS domain CHQ57_17895 PF00563 EAL domain CHQ57_17895 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_17905 PF00118 TCP-1/cpn60 chaperonin family CHQ57_17910 PF00166 Chaperonin 10 Kd subunit CHQ57_17920 PF04186 FxsA cytoplasmic membrane protein CHQ57_17925 PF10415 Fumarase C C-terminus CHQ57_17925 PF00206 Lyase CHQ57_17930 PF03605 Anaerobic c4-dicarboxylate membrane transporter CHQ57_17935 PF00267 Gram-negative porin CHQ57_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_17945 PF03466 LysR substrate binding domain CHQ57_17950 PF03413 Peptidase propeptide and YPEB domain CHQ57_17950 PF07504 Fungalysin/Thermolysin Propeptide Motif CHQ57_17950 PF04151 Bacterial pre-peptidase C-terminal domain CHQ57_17950 PF02868 Thermolysin metallopeptidase, alpha-helical domain CHQ57_17950 PF01447 Thermolysin metallopeptidase, catalytic domain CHQ57_17955 PF13302 Acetyltransferase (GNAT) domain CHQ57_17960 PF13302 Acetyltransferase (GNAT) domain CHQ57_17980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CHQ57_17980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CHQ57_17985 PF07690 Major Facilitator Superfamily CHQ57_17990 PF01725 Ham1 family CHQ57_17995 PF04055 Radical SAM superfamily CHQ57_17995 PF06969 HemN C-terminal domain CHQ57_18000 PF03889 Alternative ribosome-rescue factor A CHQ57_18005 PF01872 RibD C-terminal domain CHQ57_18010 PF13411 MerR HTH family regulatory protein CHQ57_18015 PF01808 AICARFT/IMPCHase bienzyme CHQ57_18015 PF02142 MGS-like domain CHQ57_18020 PF02844 Phosphoribosylglycinamide synthetase, N domain CHQ57_18020 PF02843 Phosphoribosylglycinamide synthetase, C domain CHQ57_18020 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CHQ57_18035 PF00128 Alpha amylase, catalytic domain CHQ57_18045 PF13356 Arm DNA-binding domain CHQ57_18045 PF14659 Phage integrase, N-terminal SAM-like domain CHQ57_18045 PF00589 Phage integrase family CHQ57_18095 PF04545 Sigma-70, region 4 CHQ57_18095 PF03979 Sigma-70 factor, region 1.1 CHQ57_18095 PF04546 Sigma-70, non-essential region CHQ57_18095 PF04542 Sigma-70 region 2 CHQ57_18095 PF04539 Sigma-70 region 3 CHQ57_18095 PF00140 Sigma-70 factor, region 1.2 CHQ57_18100 PF01807 CHC2 zinc finger CHQ57_18100 PF08275 DNA primase catalytic core, N-terminal domain CHQ57_18100 PF08278 DNA primase DnaG DnaB-binding CHQ57_18100 PF10410 DnaB-helicase binding domain of primase CHQ57_18105 PF09424 Yqey-like protein CHQ57_18110 PF01165 Ribosomal protein S21 CHQ57_18115 PF00814 Glycoprotease family CHQ57_18125 PF04545 Sigma-70, region 4 CHQ57_18125 PF04539 Sigma-70 region 3 CHQ57_18125 PF00140 Sigma-70 factor, region 1.2 CHQ57_18125 PF04542 Sigma-70 region 2 CHQ57_18130 PF01476 LysM domain CHQ57_18130 PF01551 Peptidase family M23 CHQ57_18135 PF09335 SNARE associated Golgi protein CHQ57_18145 PF01975 Survival protein SurE CHQ57_18150 PF01142 tRNA pseudouridine synthase D (TruD) CHQ57_18155 PF02542 YgbB family CHQ57_18160 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CHQ57_18165 PF04977 Septum formation initiator CHQ57_18170 PF00113 Enolase, C-terminal TIM barrel domain CHQ57_18170 PF03952 Enolase, N-terminal domain CHQ57_18175 PF06418 CTP synthase N-terminus CHQ57_18175 PF00117 Glutamine amidotransferase class-I CHQ57_18180 PF03819 MazG nucleotide pyrophosphohydrolase domain CHQ57_18185 PF02824 TGS domain CHQ57_18185 PF13291 ACT domain CHQ57_18185 PF04607 Region found in RelA / SpoT proteins CHQ57_18190 PF05958 tRNA (Uracil-5-)-methyltransferase CHQ57_18190 PF01938 TRAM domain CHQ57_18195 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CHQ57_18195 PF00672 HAMP domain CHQ57_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_18195 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_18195 PF00072 Response regulator receiver domain CHQ57_18195 PF01627 Hpt domain CHQ57_18200 PF07308 Protein of unknown function (DUF1456) CHQ57_18205 PF01510 N-acetylmuramoyl-L-alanine amidase CHQ57_18210 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CHQ57_18215 PF11967 Recombination protein O N terminal CHQ57_18215 PF02565 Recombination protein O C terminal CHQ57_18220 PF07650 KH domain CHQ57_18220 PF01926 50S ribosome-binding GTPase CHQ57_18225 PF14622 Ribonuclease-III-like CHQ57_18225 PF00035 Double-stranded RNA binding motif CHQ57_18230 PF10502 Signal peptidase, peptidase S26 CHQ57_18235 PF00679 Elongation factor G C-terminus CHQ57_18235 PF00009 Elongation factor Tu GTP binding domain CHQ57_18235 PF03144 Elongation factor Tu domain 2 CHQ57_18235 PF06421 GTP-binding protein LepA C-terminus CHQ57_18245 PF17188 MucB/RseB C-terminal domain CHQ57_18245 PF03888 MucB/RseB N-terminal domain CHQ57_18250 PF03872 Anti sigma-E protein RseA, N-terminal domain CHQ57_18250 PF03873 Anti sigma-E protein RseA, C-terminal domain CHQ57_18255 PF04542 Sigma-70 region 2 CHQ57_18255 PF08281 Sigma-70, region 4 CHQ57_18260 PF02910 Fumarate reductase flavoprotein C-term CHQ57_18260 PF00890 FAD binding domain CHQ57_18270 PF03937 Flavinator of succinate dehydrogenase CHQ57_18275 PF01571 Aminomethyltransferase folate-binding domain CHQ57_18280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_18280 PF03466 LysR substrate binding domain CHQ57_18295 PF03091 CutA1 divalent ion tolerance protein CHQ57_18300 PF02683 Cytochrome C biogenesis protein transmembrane region CHQ57_18300 PF11412 Disulphide bond corrector protein DsbC CHQ57_18315 PF01266 FAD dependent oxidoreductase CHQ57_18320 PF01116 Fructose-bisphosphate aldolase class-II CHQ57_18325 PF00162 Phosphoglycerate kinase CHQ57_18330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CHQ57_18330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CHQ57_18335 PF00480 ROK family CHQ57_18350 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CHQ57_18365 PF00005 ABC transporter CHQ57_18385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_18385 PF08447 PAS fold CHQ57_18405 PF00313 'Cold-shock' DNA-binding domain CHQ57_18415 PF02080 TrkA-C domain CHQ57_18415 PF03600 Citrate transporter CHQ57_18420 PF00009 Elongation factor Tu GTP binding domain CHQ57_18425 PF01507 Phosphoadenosine phosphosulfate reductase family CHQ57_18430 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHQ57_18430 PF14824 Sirohaem biosynthesis protein central CHQ57_18430 PF10414 Sirohaem synthase dimerisation region CHQ57_18435 PF01145 SPFH domain / Band 7 family CHQ57_18435 PF16200 C-terminal region of band_7 CHQ57_18440 PF01957 NfeD-like C-terminal, partner-binding CHQ57_18445 PF00571 CBS domain CHQ57_18445 PF01380 SIS domain CHQ57_18450 PF00005 ABC transporter CHQ57_18450 PF12848 ABC transporter CHQ57_18460 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CHQ57_18480 PF13592 Winged helix-turn helix CHQ57_18480 PF13358 DDE superfamily endonuclease CHQ57_18500 PF13411 MerR HTH family regulatory protein CHQ57_18510 PF00474 Sodium:solute symporter family CHQ57_18515 PF17969 L,D-transpeptidase C-terminal domain CHQ57_18515 PF03734 L,D-transpeptidase catalytic domain CHQ57_18520 PF00924 Mechanosensitive ion channel CHQ57_18525 PF00871 Acetokinase family CHQ57_18530 PF04074 YhcH/YjgK/YiaL CHQ57_18540 PF01177 Asp/Glu/Hydantoin racemase CHQ57_18545 PF01810 LysE type translocator CHQ57_18555 PF00392 Bacterial regulatory proteins, gntR family CHQ57_18555 PF00155 Aminotransferase class I and II CHQ57_18580 PF00209 Sodium:neurotransmitter symporter family CHQ57_18590 PF00209 Sodium:neurotransmitter symporter family CHQ57_18620 PF01037 Lrp/AsnC ligand binding domain CHQ57_18635 PF01047 MarR family CHQ57_18640 PF02566 OsmC-like protein CHQ57_18645 PF00107 Zinc-binding dehydrogenase CHQ57_18645 PF16884 N-terminal domain of oxidoreductase CHQ57_18650 PF00293 NUDIX domain CHQ57_18665 PF08335 GlnD PII-uridylyltransferase CHQ57_18665 PF03710 Glutamate-ammonia ligase adenylyltransferase CHQ57_18670 PF08220 DeoR-like helix-turn-helix domain CHQ57_18670 PF00455 DeoR C terminal sensor domain CHQ57_18680 PF00106 short chain dehydrogenase CHQ57_18685 PF03829 PTS system glucitol/sorbitol-specific IIA component CHQ57_18690 PF03612 Sorbitol phosphotransferase enzyme II N-terminus CHQ57_18690 PF07663 Sorbitol phosphotransferase enzyme II C-terminus CHQ57_18695 PF03608 PTS system enzyme II sorbitol-specific factor CHQ57_18715 PF05170 AsmA family CHQ57_18720 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CHQ57_18720 PF00326 Prolyl oligopeptidase family CHQ57_18725 PF00005 ABC transporter CHQ57_18725 PF12704 MacB-like periplasmic core domain CHQ57_18725 PF02687 FtsX-like permease family CHQ57_18730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CHQ57_18735 PF00072 Response regulator receiver domain CHQ57_18735 PF00486 Transcriptional regulatory protein, C terminal CHQ57_18740 PF00672 HAMP domain CHQ57_18740 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_18740 PF16527 Two-component sensor protein CpxA, periplasmic domain CHQ57_18740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_18745 PF00293 NUDIX domain CHQ57_18745 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CHQ57_18745 PF09297 NADH pyrophosphatase zinc ribbon domain CHQ57_18780 PF03060 Nitronate monooxygenase CHQ57_18790 PF00445 Ribonuclease T2 family CHQ57_18800 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CHQ57_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_18815 PF03466 LysR substrate binding domain CHQ57_18820 PF00270 DEAD/DEAH box helicase CHQ57_18820 PF00271 Helicase conserved C-terminal domain CHQ57_18830 PF00753 Metallo-beta-lactamase superfamily CHQ57_18845 PF01425 Amidase CHQ57_18850 PF04371 Porphyromonas-type peptidyl-arginine deiminase CHQ57_18855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_18855 PF03466 LysR substrate binding domain CHQ57_18860 PF00106 short chain dehydrogenase CHQ57_18875 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_18880 PF10952 Protein of unknown function (DUF2753) CHQ57_18885 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_18895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_18910 PF02594 Uncharacterised ACR, YggU family COG1872 CHQ57_18915 PF02325 YGGT family CHQ57_18920 PF14748 Pyrroline-5-carboxylate reductase dimerisation CHQ57_18920 PF03807 NADP oxidoreductase coenzyme F420-dependent CHQ57_18925 PF01168 Alanine racemase, N-terminal domain CHQ57_18930 PF00437 Type II/IV secretion system protein CHQ57_18935 PF00437 Type II/IV secretion system protein CHQ57_18940 PF03883 Peroxide stress protein YaaA CHQ57_18945 PF00270 DEAD/DEAH box helicase CHQ57_18945 PF00271 Helicase conserved C-terminal domain CHQ57_18950 PF05175 Methyltransferase small domain CHQ57_18955 PF05525 Branched-chain amino acid transport protein CHQ57_18970 PF01475 Ferric uptake regulator family CHQ57_18975 PF01207 Dihydrouridine synthase (Dus) CHQ57_18990 PF00216 Bacterial DNA-binding protein CHQ57_18995 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CHQ57_19000 PF07238 PilZ domain CHQ57_19005 PF18073 Rubredoxin metal binding domain CHQ57_19020 PF18429 Domain of unknown function (DUF5609) CHQ57_19030 PF01048 Phosphorylase superfamily CHQ57_19035 PF01676 Metalloenzyme superfamily CHQ57_19040 PF02885 Glycosyl transferase family, helical bundle domain CHQ57_19040 PF00591 Glycosyl transferase family, a/b domain CHQ57_19040 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CHQ57_19045 PF01791 DeoC/LacD family aldolase CHQ57_19055 PF01773 Na+ dependent nucleoside transporter N-terminus CHQ57_19055 PF07662 Na+ dependent nucleoside transporter C-terminus CHQ57_19055 PF07670 Nucleoside recognition CHQ57_19060 PF01026 TatD related DNase CHQ57_19080 PF01938 TRAM domain CHQ57_19080 PF05958 tRNA (Uracil-5-)-methyltransferase CHQ57_19085 PF00909 Ammonium Transporter Family CHQ57_19100 PF03739 Lipopolysaccharide export system permease LptF/LptG CHQ57_19105 PF03739 Lipopolysaccharide export system permease LptF/LptG CHQ57_19110 PF02789 Cytosol aminopeptidase family, N-terminal domain CHQ57_19110 PF00883 Cytosol aminopeptidase family, catalytic domain CHQ57_19115 PF04364 DNA polymerase III chi subunit, HolC CHQ57_19120 PF00133 tRNA synthetases class I (I, L, M and V) CHQ57_19120 PF08264 Anticodon-binding domain of tRNA CHQ57_19120 PF10458 Valyl tRNA synthetase tRNA binding arm CHQ57_19125 PF03471 Transporter associated domain CHQ57_19125 PF00571 CBS domain CHQ57_19125 PF01595 Cyclin M transmembrane N-terminal domain CHQ57_19130 PF09335 SNARE associated Golgi protein CHQ57_19135 PF00768 D-alanyl-D-alanine carboxypeptidase CHQ57_19170 PF02599 Global regulator protein family CHQ57_19175 PF13840 ACT domain CHQ57_19175 PF01842 ACT domain CHQ57_19175 PF00696 Amino acid kinase family CHQ57_19180 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CHQ57_19180 PF01411 tRNA synthetases class II (A) CHQ57_19180 PF02272 DHHA1 domain CHQ57_19185 PF02631 RecX family CHQ57_19190 PF00154 recA bacterial DNA recombination protein CHQ57_19195 PF02464 Competence-damaged protein CHQ57_19200 PF01740 STAS domain CHQ57_19200 PF00916 Sulfate permease family CHQ57_19205 PF00582 Universal stress protein family CHQ57_19210 PF04073 Aminoacyl-tRNA editing domain CHQ57_19230 PF00392 Bacterial regulatory proteins, gntR family CHQ57_19230 PF00155 Aminotransferase class I and II CHQ57_19240 PF03466 LysR substrate binding domain CHQ57_19240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_19245 PF03788 LrgA family CHQ57_19250 PF04172 LrgB-like family CHQ57_19265 PF00742 Homoserine dehydrogenase CHQ57_19265 PF00696 Amino acid kinase family CHQ57_19265 PF03447 Homoserine dehydrogenase, NAD binding domain CHQ57_19270 PF01053 Cys/Met metabolism PLP-dependent enzyme CHQ57_19275 PF01340 Met Apo-repressor, MetJ CHQ57_19280 PF12833 Helix-turn-helix domain CHQ57_19280 PF06445 GyrI-like small molecule binding domain CHQ57_19285 PF01588 Putative tRNA binding domain CHQ57_19290 PF03222 Tryptophan/tyrosine permease family CHQ57_19295 PF00459 Inositol monophosphatase family CHQ57_19300 PF00293 NUDIX domain CHQ57_19305 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_19310 PF00579 tRNA synthetases class I (W and Y) CHQ57_19310 PF01479 S4 domain CHQ57_19315 PF00196 Bacterial regulatory proteins, luxR family CHQ57_19320 PF01203 Type II secretion system (T2SS), protein N CHQ57_19325 PF04612 Type II secretion system (T2SS), protein M CHQ57_19330 PF05134 Type II secretion system (T2SS), protein L CHQ57_19330 PF12693 GspL periplasmic domain CHQ57_19335 PF03934 Type II secretion system (T2SS), protein K CHQ57_19340 PF07963 Prokaryotic N-terminal methylation motif CHQ57_19340 PF11612 Type II secretion system (T2SS), protein J CHQ57_19345 PF02501 Type II secretion system (T2SS), protein I CHQ57_19345 PF07963 Prokaryotic N-terminal methylation motif CHQ57_19350 PF07963 Prokaryotic N-terminal methylation motif CHQ57_19350 PF12019 Type II transport protein GspH CHQ57_19355 PF08334 Type II secretion system (T2SS), protein G CHQ57_19355 PF07963 Prokaryotic N-terminal methylation motif CHQ57_19360 PF00482 Type II secretion system (T2SS), protein F CHQ57_19365 PF00437 Type II/IV secretion system protein CHQ57_19370 PF03958 Bacterial type II/III secretion system short domain CHQ57_19370 PF00263 Bacterial type II and III secretion system protein CHQ57_19375 PF11356 Type II secretion system protein C CHQ57_19380 PF01479 S4 domain CHQ57_19385 PF01430 Hsp33 protein CHQ57_19390 PF01293 Phosphoenolpyruvate carboxykinase CHQ57_19395 PF00392 Bacterial regulatory proteins, gntR family CHQ57_19400 PF01321 Creatinase/Prolidase N-terminal domain CHQ57_19400 PF00557 Metallopeptidase family M24 CHQ57_19405 PF11756 Nitrous oxide-stimulated promoter CHQ57_19410 PF00583 Acetyltransferase (GNAT) family CHQ57_19415 PF05433 Glycine zipper 2TM domain CHQ57_19425 PF02872 5'-nucleotidase, C-terminal domain CHQ57_19425 PF00149 Calcineurin-like phosphoesterase CHQ57_19430 PF01810 LysE type translocator CHQ57_19435 PF03472 Autoinducer binding domain CHQ57_19435 PF00196 Bacterial regulatory proteins, luxR family CHQ57_19440 PF00765 Autoinducer synthase CHQ57_19445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_19445 PF03466 LysR substrate binding domain CHQ57_19450 PF08206 Ribonuclease B OB domain CHQ57_19450 PF00773 RNB domain CHQ57_19450 PF17876 Cold shock domain CHQ57_19465 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_19465 PF02378 Phosphotransferase system, EIIC CHQ57_19465 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_19470 PF01232 Mannitol dehydrogenase Rossmann domain CHQ57_19470 PF08125 Mannitol dehydrogenase C-terminal domain CHQ57_19475 PF05068 Mannitol repressor CHQ57_19480 PF03471 Transporter associated domain CHQ57_19480 PF00999 Sodium/hydrogen exchanger family CHQ57_19480 PF02080 TrkA-C domain CHQ57_19485 PF01556 DnaJ C terminal domain CHQ57_19485 PF00684 DnaJ central domain CHQ57_19485 PF00226 DnaJ domain CHQ57_19500 PF01544 CorA-like Mg2+ transporter protein CHQ57_19505 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CHQ57_19520 PF04307 LexA-binding, inner membrane-associated putative hydrolase CHQ57_19525 PF03880 DbpA RNA binding domain CHQ57_19525 PF00270 DEAD/DEAH box helicase CHQ57_19525 PF00271 Helicase conserved C-terminal domain CHQ57_19550 PF01040 UbiA prenyltransferase family CHQ57_19555 PF00425 chorismate binding enzyme CHQ57_19560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_19560 PF16582 Middle domain of thiamine pyrophosphate CHQ57_19560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHQ57_19565 PF12697 Alpha/beta hydrolase family CHQ57_19570 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_19575 PF13378 Enolase C-terminal domain-like CHQ57_19580 PF00501 AMP-binding enzyme CHQ57_19590 PF13737 Transposase DDE domain CHQ57_19600 PF00419 Fimbrial protein CHQ57_19605 PF00419 Fimbrial protein CHQ57_19610 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CHQ57_19610 PF02753 Pili assembly chaperone PapD, C-terminal domain CHQ57_19615 PF13953 PapC C-terminal domain CHQ57_19615 PF13954 PapC N-terminal domain CHQ57_19615 PF00577 Outer membrane usher protein CHQ57_19625 PF00419 Fimbrial protein CHQ57_19635 PF01752 Collagenase CHQ57_19635 PF08453 Peptidase family M9 N-terminal CHQ57_19640 PF02698 DUF218 domain CHQ57_19645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CHQ57_19645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CHQ57_19655 PF00561 alpha/beta hydrolase fold CHQ57_19665 PF03280 Proteobacterial lipase chaperone protein CHQ57_19680 PF00141 Peroxidase CHQ57_19685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CHQ57_19685 PF12793 Sugar transport-related sRNA regulator N-term CHQ57_19695 PF01053 Cys/Met metabolism PLP-dependent enzyme CHQ57_19705 PF00465 Iron-containing alcohol dehydrogenase CHQ57_19725 PF00294 pfkB family carbohydrate kinase CHQ57_19725 PF01467 Cytidylyltransferase-like CHQ57_19730 PF03279 Bacterial lipid A biosynthesis acyltransferase CHQ57_19750 PF01865 Protein of unknown function DUF47 CHQ57_19755 PF01384 Phosphate transporter family CHQ57_19760 PF12627 Probable RNA and SrmB- binding site of polymerase A CHQ57_19760 PF01743 Poly A polymerase head domain CHQ57_19760 PF01966 HD domain CHQ57_19765 PF01471 Putative peptidoglycan binding domain CHQ57_19765 PF13401 AAA domain CHQ57_19770 PF16537 Type II secretion system protein B CHQ57_19775 PF00730 HhH-GPD superfamily base excision DNA repair protein CHQ57_19775 PF10576 Iron-sulfur binding domain of endonuclease III CHQ57_19775 PF00633 Helix-hairpin-helix motif CHQ57_19775 PF14815 NUDIX domain CHQ57_19780 PF04362 Bacterial Fe(2+) trafficking CHQ57_19785 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CHQ57_19785 PF01464 Transglycosylase SLT domain CHQ57_19790 PF04076 Bacterial OB fold (BOF) protein CHQ57_19795 PF00657 GDSL-like Lipase/Acylhydrolase CHQ57_19805 PF00691 OmpA family CHQ57_19805 PF01389 OmpA-like transmembrane domain CHQ57_19810 PF03886 ABC-type transport auxiliary lipoprotein component CHQ57_19815 PF02470 MlaD protein CHQ57_19820 PF04403 Paraquat-inducible protein A CHQ57_19825 PF17209 Hfq protein CHQ57_19830 PF13419 Haloacid dehalogenase-like hydrolase CHQ57_19840 PF00563 EAL domain CHQ57_19840 PF00360 Phytochrome region CHQ57_19840 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_19840 PF01590 GAF domain CHQ57_19845 PF00701 Dihydrodipicolinate synthetase family CHQ57_19850 PF08468 Methyltransferase small domain N-terminal CHQ57_19850 PF05175 Methyltransferase small domain CHQ57_19855 PF00483 Nucleotidyl transferase CHQ57_19860 PF00534 Glycosyl transferases group 1 CHQ57_19860 PF08323 Starch synthase catalytic domain CHQ57_19895 PF03553 Na+/H+ antiporter family CHQ57_19915 PF14602 Hexapeptide repeat of succinyl-transferase CHQ57_19915 PF12464 Maltose acetyltransferase CHQ57_19920 PF11941 Domain of unknown function (DUF3459) CHQ57_19920 PF00128 Alpha amylase, catalytic domain CHQ57_19925 PF00367 phosphotransferase system, EIIB CHQ57_19925 PF02378 Phosphotransferase system, EIIC CHQ57_19930 PF00356 Bacterial regulatory proteins, lacI family CHQ57_19940 PF02378 Phosphotransferase system, EIIC CHQ57_19945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_19950 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_19950 PF02378 Phosphotransferase system, EIIC CHQ57_19955 PF00232 Glycosyl hydrolase family 1 CHQ57_19960 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CHQ57_19965 PF00480 ROK family CHQ57_19975 PF00356 Bacterial regulatory proteins, lacI family CHQ57_19985 PF17763 Glutaminase/Asparaginase C-terminal domain CHQ57_19985 PF00710 Asparaginase, N-terminal CHQ57_20000 PF02142 MGS-like domain CHQ57_20010 PF00210 Ferritin-like domain CHQ57_20025 PF17176 tRNA-binding domain CHQ57_20025 PF05127 Helicase CHQ57_20025 PF13718 GNAT acetyltransferase 2 CHQ57_20025 PF08351 Domain of unknown function (DUF1726) CHQ57_20030 PF00106 short chain dehydrogenase CHQ57_20035 PF00072 Response regulator receiver domain CHQ57_20035 PF01584 CheW-like domain CHQ57_20075 PF02660 Glycerol-3-phosphate acyltransferase CHQ57_20080 PF02152 Dihydroneopterin aldolase CHQ57_20085 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CHQ57_20095 PF07690 Major Facilitator Superfamily CHQ57_20100 PF07683 Cobalamin synthesis protein cobW C-terminal domain CHQ57_20100 PF02492 CobW/HypB/UreG, nucleotide-binding domain CHQ57_20110 PF12792 CSS motif domain associated with EAL CHQ57_20110 PF00563 EAL domain CHQ57_20115 PF11791 Aconitate B N-terminal domain CHQ57_20115 PF00330 Aconitase family (aconitate hydratase) CHQ57_20115 PF06434 Aconitate hydratase 2 N-terminus CHQ57_20125 PF12729 Four helix bundle sensory module for signal transduction CHQ57_20125 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_20125 PF00672 HAMP domain CHQ57_20130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_20130 PF12729 Four helix bundle sensory module for signal transduction CHQ57_20130 PF00672 HAMP domain CHQ57_20140 PF08447 PAS fold CHQ57_20140 PF08448 PAS fold CHQ57_20140 PF13426 PAS domain CHQ57_20140 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_20140 PF05231 MASE1 CHQ57_20140 PF00563 EAL domain CHQ57_20145 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_20145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHQ57_20150 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CHQ57_20150 PF00364 Biotin-requiring enzyme CHQ57_20150 PF02817 e3 binding domain CHQ57_20155 PF17831 Pyruvate dehydrogenase E1 component middle domain CHQ57_20155 PF00456 Transketolase, thiamine diphosphate binding domain CHQ57_20160 PF00392 Bacterial regulatory proteins, gntR family CHQ57_20160 PF07729 FCD domain CHQ57_20165 PF01510 N-acetylmuramoyl-L-alanine amidase CHQ57_20175 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CHQ57_20175 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CHQ57_20180 PF07963 Prokaryotic N-terminal methylation motif CHQ57_20185 PF00437 Type II/IV secretion system protein CHQ57_20185 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CHQ57_20190 PF00482 Type II secretion system (T2SS), protein F CHQ57_20195 PF01478 Type IV leader peptidase family CHQ57_20195 PF06750 Bacterial Peptidase A24 N-terminal domain CHQ57_20200 PF01121 Dephospho-CoA kinase CHQ57_20205 PF07072 Cell division protein CHQ57_20210 PF03884 DNA gyrase inhibitor YacG CHQ57_20215 PF00293 NUDIX domain CHQ57_20220 PF07516 SecA Wing and Scaffold domain CHQ57_20220 PF01043 SecA preprotein cross-linking domain CHQ57_20220 PF07517 SecA DEAD-like domain CHQ57_20220 PF02810 SEC-C motif CHQ57_20230 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CHQ57_20235 PF12327 FtsZ family, C-terminal domain CHQ57_20235 PF00091 Tubulin/FtsZ family, GTPase domain CHQ57_20240 PF02491 SHS2 domain inserted in FTSA CHQ57_20245 PF08478 POTRA domain, FtsQ-type CHQ57_20245 PF03799 Cell division protein FtsQ CHQ57_20250 PF08245 Mur ligase middle domain CHQ57_20250 PF02875 Mur ligase family, glutamate ligase domain CHQ57_20250 PF01225 Mur ligase family, catalytic domain CHQ57_20255 PF03033 Glycosyltransferase family 28 N-terminal domain CHQ57_20255 PF04101 Glycosyltransferase family 28 C-terminal domain CHQ57_20260 PF01098 Cell cycle protein CHQ57_20265 PF08245 Mur ligase middle domain CHQ57_20265 PF02875 Mur ligase family, glutamate ligase domain CHQ57_20270 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CHQ57_20270 PF00953 Glycosyl transferase family 4 CHQ57_20275 PF01225 Mur ligase family, catalytic domain CHQ57_20275 PF02875 Mur ligase family, glutamate ligase domain CHQ57_20275 PF08245 Mur ligase middle domain CHQ57_20280 PF01225 Mur ligase family, catalytic domain CHQ57_20280 PF02875 Mur ligase family, glutamate ligase domain CHQ57_20280 PF08245 Mur ligase middle domain CHQ57_20285 PF00905 Penicillin binding protein transpeptidase domain CHQ57_20285 PF03717 Penicillin-binding Protein dimerisation domain CHQ57_20290 PF04999 Cell division protein FtsL CHQ57_20295 PF01795 MraW methylase family CHQ57_20300 PF02381 MraZ protein, putative antitoxin-like CHQ57_20310 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHQ57_20315 PF04348 LppC putative lipoprotein CHQ57_20320 PF02021 Uncharacterised protein family UPF0102 CHQ57_20325 PF13580 SIS domain CHQ57_20330 PF04972 BON domain CHQ57_20335 PF04386 Stringent starvation protein B CHQ57_20340 PF00043 Glutathione S-transferase, C-terminal domain CHQ57_20340 PF02798 Glutathione S-transferase, N-terminal domain CHQ57_20345 PF02167 Cytochrome C1 family CHQ57_20350 PF00033 Cytochrome b/b6/petB CHQ57_20350 PF00032 Cytochrome b(C-terminal)/b6/petD CHQ57_20355 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CHQ57_20355 PF00355 Rieske [2Fe-2S] domain CHQ57_20360 PF00380 Ribosomal protein S9/S16 CHQ57_20365 PF00572 Ribosomal protein L13 CHQ57_20370 PF03969 AFG1-like ATPase CHQ57_20380 PF00595 PDZ domain CHQ57_20380 PF13180 PDZ domain CHQ57_20385 PF13180 PDZ domain CHQ57_20420 PF01979 Amidohydrolase family CHQ57_20425 PF03841 L-seryl-tRNA selenium transferase CHQ57_20430 PF07071 KDGP aldolase CHQ57_20435 PF02378 Phosphotransferase system, EIIC CHQ57_20435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_20435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CHQ57_20440 PF00381 PTS HPr component phosphorylation site CHQ57_20445 PF03668 P-loop ATPase protein family CHQ57_20450 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CHQ57_20455 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CHQ57_20460 PF04963 Sigma-54 factor, core binding domain CHQ57_20460 PF04552 Sigma-54, DNA binding domain CHQ57_20460 PF00309 Sigma-54 factor, Activator interacting domain (AID) CHQ57_20465 PF00005 ABC transporter CHQ57_20465 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHQ57_20470 PF03968 OstA-like protein CHQ57_20475 PF06835 Lipopolysaccharide-assembly, LptC-related CHQ57_20485 PF01380 SIS domain CHQ57_20485 PF00571 CBS domain CHQ57_20490 PF00005 ABC transporter CHQ57_20495 PF02405 Permease MlaE CHQ57_20500 PF02470 MlaD protein CHQ57_20505 PF05494 MlaC protein CHQ57_20515 PF01722 BolA-like protein CHQ57_20520 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CHQ57_20525 PF01523 Putative modulator of DNA gyrase CHQ57_20530 PF04751 Protein of unknown function (DUF615) CHQ57_20540 PF04363 Protein of unknown function (DUF496) CHQ57_20555 PF13091 PLD-like domain CHQ57_20560 PF00497 Bacterial extracellular solute-binding proteins, family 3 CHQ57_20560 PF01464 Transglycosylase SLT domain CHQ57_20570 PF02416 mttA/Hcf106 family CHQ57_20575 PF03466 LysR substrate binding domain CHQ57_20575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_20580 PF01914 MarC family integral membrane protein CHQ57_20585 PF10678 Protein of unknown function (DUF2492) CHQ57_20590 PF00375 Sodium:dicarboxylate symporter family CHQ57_20600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_20600 PF03466 LysR substrate binding domain CHQ57_20605 PF13533 Biotin-lipoyl like CHQ57_20610 PF07690 Major Facilitator Superfamily CHQ57_20615 PF07947 YhhN family CHQ57_20635 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CHQ57_20635 PF00326 Prolyl oligopeptidase family CHQ57_20650 PF02525 Flavodoxin-like fold CHQ57_20655 PF00999 Sodium/hydrogen exchanger family CHQ57_20655 PF02254 TrkA-N domain CHQ57_20685 PF01548 Transposase CHQ57_20685 PF02371 Transposase IS116/IS110/IS902 family CHQ57_20730 PF03143 Elongation factor Tu C-terminal domain CHQ57_20730 PF03144 Elongation factor Tu domain 2 CHQ57_20730 PF00009 Elongation factor Tu GTP binding domain CHQ57_20735 PF00679 Elongation factor G C-terminus CHQ57_20735 PF14492 Elongation Factor G, domain II CHQ57_20735 PF03764 Elongation factor G, domain IV CHQ57_20735 PF00009 Elongation factor Tu GTP binding domain CHQ57_20735 PF03144 Elongation factor Tu domain 2 CHQ57_20740 PF00177 Ribosomal protein S7p/S5e CHQ57_20745 PF00164 Ribosomal protein S12/S23 CHQ57_20750 PF04077 DsrH like protein CHQ57_20755 PF02635 DsrE/DsrF-like family CHQ57_20760 PF02635 DsrE/DsrF-like family CHQ57_20765 PF01042 Endoribonuclease L-PSP CHQ57_20770 PF08348 YheO-like PAS domain CHQ57_20770 PF13309 HTH domain CHQ57_20775 PF00623 RNA polymerase Rpb1, domain 2 CHQ57_20775 PF04983 RNA polymerase Rpb1, domain 3 CHQ57_20775 PF05000 RNA polymerase Rpb1, domain 4 CHQ57_20775 PF04997 RNA polymerase Rpb1, domain 1 CHQ57_20775 PF04998 RNA polymerase Rpb1, domain 5 CHQ57_20780 PF10385 RNA polymerase beta subunit external 1 domain CHQ57_20780 PF04563 RNA polymerase beta subunit CHQ57_20780 PF04560 RNA polymerase Rpb2, domain 7 CHQ57_20780 PF00562 RNA polymerase Rpb2, domain 6 CHQ57_20780 PF04565 RNA polymerase Rpb2, domain 3 CHQ57_20780 PF04561 RNA polymerase Rpb2, domain 2 CHQ57_20785 PF00542 Ribosomal protein L7/L12 C-terminal domain CHQ57_20785 PF16320 Ribosomal protein L7/L12 dimerisation domain CHQ57_20790 PF00466 Ribosomal protein L10 CHQ57_20795 PF00687 Ribosomal protein L1p/L10e family CHQ57_20800 PF03946 Ribosomal protein L11, N-terminal domain CHQ57_20800 PF00298 Ribosomal protein L11, RNA binding domain CHQ57_20805 PF02357 Transcription termination factor nusG CHQ57_20805 PF00467 KOW motif CHQ57_20810 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CHQ57_20820 PF03143 Elongation factor Tu C-terminal domain CHQ57_20820 PF03144 Elongation factor Tu domain 2 CHQ57_20820 PF00009 Elongation factor Tu GTP binding domain CHQ57_20835 PF00485 Phosphoribulokinase / Uridine kinase family CHQ57_20840 PF08279 HTH domain CHQ57_20840 PF03099 Biotin/lipoate A/B protein ligase family CHQ57_20840 PF02237 Biotin protein ligase C terminal domain CHQ57_20845 PF01565 FAD binding domain CHQ57_20845 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CHQ57_20850 PF02080 TrkA-C domain CHQ57_20850 PF02254 TrkA-N domain CHQ57_20855 PF02386 Cation transport protein CHQ57_20860 PF01131 DNA topoisomerase CHQ57_20860 PF01751 Toprim domain CHQ57_20865 PF03264 NapC/NirT cytochrome c family, N-terminal region CHQ57_20870 PF01568 Molydopterin dinucleotide binding domain CHQ57_20870 PF18364 Molybdopterin oxidoreductase N-terminal domain CHQ57_20870 PF00384 Molybdopterin oxidoreductase CHQ57_20880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_20880 PF08918 PhoQ Sensor CHQ57_20885 PF00486 Transcriptional regulatory protein, C terminal CHQ57_20885 PF00072 Response regulator receiver domain CHQ57_20900 PF01794 Ferric reductase like transmembrane component CHQ57_20905 PF00174 Oxidoreductase molybdopterin binding domain CHQ57_20915 PF06496 Protein of unknown function (DUF1097) CHQ57_20920 PF00158 Sigma-54 interaction domain CHQ57_20920 PF00072 Response regulator receiver domain CHQ57_20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_20930 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_20945 PF00478 IMP dehydrogenase / GMP reductase domain CHQ57_20945 PF00571 CBS domain CHQ57_20950 PF10063 Uncharacterized integral membrane protein (DUF2301) CHQ57_20960 PF01037 Lrp/AsnC ligand binding domain CHQ57_20965 PF03590 Aspartate-ammonia ligase CHQ57_20970 PF07724 AAA domain (Cdc48 subfamily) CHQ57_20970 PF10431 C-terminal, D2-small domain, of ClpB protein CHQ57_20970 PF02861 Clp amino terminal domain, pathogenicity island component CHQ57_20970 PF17871 AAA lid domain CHQ57_20970 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_20980 PF00849 RNA pseudouridylate synthase CHQ57_20980 PF01479 S4 domain CHQ57_20985 PF13525 Outer membrane lipoprotein CHQ57_20990 PF01548 Transposase CHQ57_20990 PF02371 Transposase IS116/IS110/IS902 family CHQ57_20995 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_20995 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CHQ57_21000 PF00375 Sodium:dicarboxylate symporter family CHQ57_21005 PF03313 Serine dehydratase alpha chain CHQ57_21010 PF08348 YheO-like PAS domain CHQ57_21010 PF13309 HTH domain CHQ57_21020 PF02233 NAD(P) transhydrogenase beta subunit CHQ57_21025 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CHQ57_21025 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CHQ57_21025 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CHQ57_21030 PF00465 Iron-containing alcohol dehydrogenase CHQ57_21035 PF12833 Helix-turn-helix domain CHQ57_21035 PF06719 AraC-type transcriptional regulator N-terminus CHQ57_21040 PF08212 Lipocalin-like domain CHQ57_21045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_21045 PF02743 Cache domain CHQ57_21045 PF00672 HAMP domain CHQ57_21065 PF03606 C4-dicarboxylate anaerobic carrier CHQ57_21070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHQ57_21070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHQ57_21075 PF00696 Amino acid kinase family CHQ57_21095 PF00672 HAMP domain CHQ57_21095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_21095 PF02743 Cache domain CHQ57_21100 PF02653 Branched-chain amino acid transport system / permease component CHQ57_21105 PF00005 ABC transporter CHQ57_21110 PF13407 Periplasmic binding protein domain CHQ57_21115 PF02929 Beta galactosidase small chain CHQ57_21115 PF16353 Domain of unknown function(DUF4981) CHQ57_21115 PF00703 Glycosyl hydrolases family 2 CHQ57_21115 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CHQ57_21115 PF02837 Glycosyl hydrolases family 2, sugar binding domain CHQ57_21120 PF00356 Bacterial regulatory proteins, lacI family CHQ57_21125 PF16363 GDP-mannose 4,6 dehydratase CHQ57_21130 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CHQ57_21130 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CHQ57_21135 PF10509 Galactokinase galactose-binding signature CHQ57_21135 PF08544 GHMP kinases C terminal CHQ57_21135 PF00288 GHMP kinases N terminal domain CHQ57_21140 PF01263 Aldose 1-epimerase CHQ57_21145 PF00248 Aldo/keto reductase family CHQ57_21150 PF02673 Bacitracin resistance protein BacA CHQ57_21160 PF04542 Sigma-70 region 2 CHQ57_21160 PF04545 Sigma-70, region 4 CHQ57_21170 PF00750 tRNA synthetases class I (R) CHQ57_21170 PF03485 Arginyl tRNA synthetase N terminal domain CHQ57_21170 PF05746 DALR anticodon binding domain CHQ57_21185 PF00227 Proteasome subunit CHQ57_21190 PF00004 ATPase family associated with various cellular activities (AAA) CHQ57_21190 PF10431 C-terminal, D2-small domain, of ClpB protein CHQ57_21190 PF07724 AAA domain (Cdc48 subfamily) CHQ57_21195 PF07690 Major Facilitator Superfamily CHQ57_21200 PF03466 LysR substrate binding domain CHQ57_21200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CHQ57_21205 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_21205 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CHQ57_21205 PF18267 Rubredoxin NAD+ reductase C-terminal domain CHQ57_21205 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CHQ57_21205 PF04324 BFD-like [2Fe-2S] binding domain CHQ57_21210 PF13806 Rieske-like [2Fe-2S] domain CHQ57_21215 PF01226 Formate/nitrite transporter CHQ57_21220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CHQ57_21220 PF14824 Sirohaem biosynthesis protein central CHQ57_21220 PF10414 Sirohaem synthase dimerisation region CHQ57_21225 PF00571 CBS domain CHQ57_21225 PF01769 Divalent cation transporter CHQ57_21225 PF03448 MgtE intracellular N domain CHQ57_21230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CHQ57_21230 PF00672 HAMP domain CHQ57_21235 PF03737 Aldolase/RraA CHQ57_21240 PF02592 Putative vitamin uptake transporter CHQ57_21250 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CHQ57_21255 PF00034 Cytochrome c CHQ57_21280 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CHQ57_21280 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CHQ57_21285 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CHQ57_21285 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CHQ57_21290 PF02863 Arginine repressor, C-terminal domain CHQ57_21290 PF01316 Arginine repressor, DNA binding domain CHQ57_21300 PF00570 HRDC domain CHQ57_21300 PF09382 RQC domain CHQ57_21300 PF16124 RecQ zinc-binding CHQ57_21300 PF00270 DEAD/DEAH box helicase CHQ57_21300 PF00271 Helicase conserved C-terminal domain CHQ57_21305 PF03061 Thioesterase superfamily CHQ57_21320 PF03473 MOSC domain CHQ57_21320 PF03475 3-alpha domain CHQ57_21325 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_21330 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_21335 PF00005 ABC transporter CHQ57_21335 PF08402 TOBE domain CHQ57_21340 PF13416 Bacterial extracellular solute-binding protein CHQ57_21345 PF13416 Bacterial extracellular solute-binding protein CHQ57_21350 PF00202 Aminotransferase class-III CHQ57_21355 PF00120 Glutamine synthetase, catalytic domain CHQ57_21365 PF01258 Prokaryotic dksA/traR C4-type zinc finger CHQ57_21375 PF05981 CreA protein CHQ57_21380 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CHQ57_21380 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CHQ57_21385 PF00012 Hsp70 protein CHQ57_21395 PF08668 HDOD domain CHQ57_21400 PF00128 Alpha amylase, catalytic domain CHQ57_21400 PF02903 Alpha amylase, N-terminal ig-like domain CHQ57_21415 PF05958 tRNA (Uracil-5-)-methyltransferase CHQ57_21420 PF00486 Transcriptional regulatory protein, C terminal CHQ57_21420 PF00072 Response regulator receiver domain CHQ57_21425 PF00672 HAMP domain CHQ57_21425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_21425 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_21435 PF00390 Malic enzyme, N-terminal domain CHQ57_21435 PF03949 Malic enzyme, NAD binding domain CHQ57_21440 PF13460 NAD(P)H-binding CHQ57_21440 PF11066 Protein of unknown function (DUF2867) CHQ57_21445 PF01197 Ribosomal protein L31 CHQ57_21450 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CHQ57_21450 PF18074 Primosomal protein N C-terminal domain CHQ57_21450 PF00270 DEAD/DEAH box helicase CHQ57_21450 PF17764 3′ DNA-binding domain (3′BD) CHQ57_21450 PF00271 Helicase conserved C-terminal domain CHQ57_21460 PF00440 Bacterial regulatory proteins, tetR family CHQ57_21470 PF00691 OmpA family CHQ57_21470 PF01389 OmpA-like transmembrane domain CHQ57_21475 PF00291 Pyridoxal-phosphate dependent enzyme CHQ57_21475 PF00585 C-terminal regulatory domain of Threonine dehydratase CHQ57_21480 PF00920 Dehydratase family CHQ57_21485 PF01063 Amino-transferase class IV CHQ57_21495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CHQ57_21495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CHQ57_21495 PF00205 Thiamine pyrophosphate enzyme, central domain CHQ57_21500 PF01078 Magnesium chelatase, subunit ChlI CHQ57_21500 PF13335 Magnesium chelatase, subunit ChlI C-terminal CHQ57_21505 PF01553 Acyltransferase CHQ57_21525 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CHQ57_21525 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CHQ57_21535 PF00005 ABC transporter CHQ57_21540 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_21545 PF01323 DSBA-like thioredoxin domain CHQ57_21550 PF01636 Phosphotransferase enzyme family CHQ57_21555 PF12801 4Fe-4S binding domain CHQ57_21555 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CHQ57_21555 PF13746 4Fe-4S dicluster domain CHQ57_21560 PF06288 Protein of unknown function (DUF1040) CHQ57_21565 PF00563 EAL domain CHQ57_21565 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_21565 PF01590 GAF domain CHQ57_21565 PF00360 Phytochrome region CHQ57_21570 PF13411 MerR HTH family regulatory protein CHQ57_21575 PF00403 Heavy-metal-associated domain CHQ57_21580 PF00156 Phosphoribosyl transferase domain CHQ57_21585 PF01138 3' exoribonuclease family, domain 1 CHQ57_21585 PF03725 3' exoribonuclease family, domain 2 CHQ57_21590 PF08340 Domain of unknown function (DUF1732) CHQ57_21590 PF03755 YicC-like family, N-terminal region CHQ57_21605 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CHQ57_21620 PF01370 NAD dependent epimerase/dehydratase family CHQ57_21625 PF00440 Bacterial regulatory proteins, tetR family CHQ57_21625 PF08360 QacR-like protein, C-terminal region CHQ57_21630 PF00155 Aminotransferase class I and II CHQ57_21635 PF00107 Zinc-binding dehydrogenase CHQ57_21635 PF08240 Alcohol dehydrogenase GroES-like domain CHQ57_21645 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_21645 PF03707 Bacterial signalling protein N terminal repeat CHQ57_21645 PF00563 EAL domain CHQ57_21650 PF13361 UvrD-like helicase C-terminal domain CHQ57_21650 PF00580 UvrD/REP helicase N-terminal domain CHQ57_21655 PF00266 Aminotransferase class-V CHQ57_21660 PF02657 Fe-S metabolism associated domain CHQ57_21665 PF00899 ThiF family CHQ57_21700 PF12724 Flavodoxin domain CHQ57_21705 PF02386 Cation transport protein CHQ57_21710 PF09186 Domain of unknown function (DUF1949) CHQ57_21710 PF01205 Uncharacterized protein family UPF0029 CHQ57_21715 PF00557 Metallopeptidase family M24 CHQ57_21720 PF13193 AMP-binding enzyme C-terminal domain CHQ57_21720 PF00501 AMP-binding enzyme CHQ57_21725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CHQ57_21725 PF00378 Enoyl-CoA hydratase/isomerase CHQ57_21725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CHQ57_21730 PF00108 Thiolase, N-terminal domain CHQ57_21730 PF02803 Thiolase, C-terminal domain CHQ57_21735 PF00486 Transcriptional regulatory protein, C terminal CHQ57_21735 PF00072 Response regulator receiver domain CHQ57_21740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CHQ57_21740 PF00512 His Kinase A (phospho-acceptor) domain CHQ57_21740 PF00672 HAMP domain CHQ57_21745 PF01547 Bacterial extracellular solute-binding protein CHQ57_21765 PF01206 Sulfurtransferase TusA CHQ57_21770 PF01042 Endoribonuclease L-PSP CHQ57_21780 PF00691 OmpA family CHQ57_21780 PF13488 Glycine zipper CHQ57_21785 PF03352 Methyladenine glycosylase CHQ57_21790 PF02091 Glycyl-tRNA synthetase alpha subunit CHQ57_21795 PF05746 DALR anticodon binding domain CHQ57_21795 PF02092 Glycyl-tRNA synthetase beta subunit CHQ57_21820 PF13426 PAS domain CHQ57_21820 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_21820 PF00563 EAL domain CHQ57_21845 PF03222 Tryptophan/tyrosine permease family CHQ57_21850 PF12801 4Fe-4S binding domain CHQ57_21860 PF07992 Pyridine nucleotide-disulphide oxidoreductase CHQ57_21860 PF18113 Rubredoxin binding C-terminal domain CHQ57_21865 PF00301 Rubredoxin CHQ57_21865 PF00753 Metallo-beta-lactamase superfamily CHQ57_21865 PF00258 Flavodoxin CHQ57_21870 PF01590 GAF domain CHQ57_21870 PF00158 Sigma-54 interaction domain CHQ57_21875 PF07702 UTRA domain CHQ57_21875 PF00392 Bacterial regulatory proteins, gntR family CHQ57_21880 PF02378 Phosphotransferase system, EIIC CHQ57_21880 PF00367 phosphotransferase system, EIIB CHQ57_21885 PF11975 Family 4 glycosyl hydrolase C-terminal domain CHQ57_21885 PF02056 Family 4 glycosyl hydrolase CHQ57_21890 PF00356 Bacterial regulatory proteins, lacI family CHQ57_21895 PF13458 Periplasmic binding protein CHQ57_21900 PF02653 Branched-chain amino acid transport system / permease component CHQ57_21905 PF11862 Domain of unknown function (DUF3382) CHQ57_21905 PF02653 Branched-chain amino acid transport system / permease component CHQ57_21910 PF12399 Branched-chain amino acid ATP-binding cassette transporter CHQ57_21910 PF00005 ABC transporter CHQ57_21915 PF00005 ABC transporter CHQ57_21925 PF01810 LysE type translocator CHQ57_21930 PF00581 Rhodanese-like domain CHQ57_21935 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease CHQ57_21935 PF01694 Rhomboid family CHQ57_21940 PF12262 Bacterial virulence factor lipase N-terminal CHQ57_21945 PF04380 Membrane fusogenic activity CHQ57_21950 PF00175 Oxidoreductase NAD-binding domain CHQ57_21955 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CHQ57_21965 PF07497 Rho termination factor, RNA-binding domain CHQ57_21965 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_21965 PF07498 Rho termination factor, N-terminal domain CHQ57_21970 PF00085 Thioredoxin CHQ57_21975 PF00270 DEAD/DEAH box helicase CHQ57_21975 PF00271 Helicase conserved C-terminal domain CHQ57_21980 PF02541 Ppx/GppA phosphatase family CHQ57_21990 PF04445 Putative SAM-dependent methyltransferase CHQ57_21995 PF00990 Diguanylate cyclase, GGDEF domain CHQ57_21995 PF03707 Bacterial signalling protein N terminal repeat CHQ57_21995 PF00563 EAL domain CHQ57_22000 PF01432 Peptidase family M3 CHQ57_22005 PF00490 Delta-aminolevulinic acid dehydratase CHQ57_22010 PF01026 TatD related DNase CHQ57_22015 PF00902 Sec-independent protein translocase protein (TatC) CHQ57_22020 PF02416 mttA/Hcf106 family CHQ57_22025 PF02416 mttA/Hcf106 family CHQ57_22030 PF03109 ABC1 family CHQ57_22035 PF02036 SCP-2 sterol transfer family CHQ57_22040 PF01209 ubiE/COQ5 methyltransferase family CHQ57_22045 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CHQ57_22050 PF07969 Amidohydrolase family CHQ57_22090 PF03544 Gram-negative bacterial TonB protein C-terminal CHQ57_22095 PF02472 Biopolymer transport protein ExbD/TolR CHQ57_22100 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_22105 PF01618 MotA/TolQ/ExbB proton channel family CHQ57_22115 PF00196 Bacterial regulatory proteins, luxR family CHQ57_22115 PF03472 Autoinducer binding domain CHQ57_22120 PF01380 SIS domain CHQ57_22125 PF08220 DeoR-like helix-turn-helix domain CHQ57_22125 PF00455 DeoR C terminal sensor domain CHQ57_22130 PF00072 Response regulator receiver domain CHQ57_22130 PF00486 Transcriptional regulatory protein, C terminal CHQ57_22140 PF00905 Penicillin binding protein transpeptidase domain CHQ57_22145 PF06123 Inner membrane protein CreD CHQ57_22150 PF00132 Bacterial transferase hexapeptide (six repeats) CHQ57_22150 PF14602 Hexapeptide repeat of succinyl-transferase CHQ57_22150 PF12804 MobA-like NTP transferase domain CHQ57_22155 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CHQ57_22155 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CHQ57_22160 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHQ57_22160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_22165 PF00231 ATP synthase CHQ57_22170 PF00306 ATP synthase alpha/beta chain, C terminal domain CHQ57_22170 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CHQ57_22170 PF02874 ATP synthase alpha/beta family, beta-barrel domain CHQ57_22175 PF00213 ATP synthase delta (OSCP) subunit CHQ57_22180 PF00430 ATP synthase B/B' CF(0) CHQ57_22185 PF00137 ATP synthase subunit C CHQ57_22190 PF00119 ATP synthase A chain CHQ57_22195 PF03899 ATP synthase I chain CHQ57_22200 PF02195 ParB-like nuclease domain CHQ57_22200 PF17762 HTH domain found in ParB protein CHQ57_22205 PF13614 AAA domain CHQ57_22210 PF02527 rRNA small subunit methyltransferase G CHQ57_22215 PF01134 Glucose inhibited division protein A CHQ57_22215 PF13932 GidA associated domain CHQ57_22220 PF00258 Flavodoxin CHQ57_22225 PF07715 TonB-dependent Receptor Plug Domain CHQ57_22225 PF00593 TonB dependent receptor CHQ57_22230 PF00005 ABC transporter CHQ57_22235 PF00005 ABC transporter CHQ57_22240 PF01497 Periplasmic binding protein CHQ57_22245 PF01032 FecCD transport family CHQ57_22250 PF00593 TonB dependent receptor CHQ57_22250 PF07715 TonB-dependent Receptor Plug Domain CHQ57_22255 PF01497 Periplasmic binding protein CHQ57_22260 PF00005 ABC transporter CHQ57_22265 PF01032 FecCD transport family CHQ57_22270 PF01032 FecCD transport family CHQ57_22275 PF00005 ABC transporter CHQ57_22280 PF00005 ABC transporter CHQ57_22280 PF00664 ABC transporter transmembrane region CHQ57_22280 PF08021 Siderophore-interacting FAD-binding domain CHQ57_22280 PF04954 Siderophore-interacting protein CHQ57_22290 PF00975 Thioesterase domain CHQ57_22290 PF00668 Condensation domain CHQ57_22290 PF13193 AMP-binding enzyme C-terminal domain CHQ57_22290 PF00501 AMP-binding enzyme CHQ57_22290 PF00550 Phosphopantetheine attachment site CHQ57_22295 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) CHQ57_22300 PF00550 Phosphopantetheine attachment site CHQ57_22300 PF00668 Condensation domain CHQ57_22300 PF00501 AMP-binding enzyme CHQ57_22310 PF00282 Pyridoxal-dependent decarboxylase conserved domain CHQ57_22315 PF10396 GTP-binding protein TrmE N-terminus CHQ57_22315 PF01926 50S ribosome-binding GTPase CHQ57_22315 PF12631 MnmE helical domain CHQ57_22320 PF02096 60Kd inner membrane protein CHQ57_22320 PF14849 YidC periplasmic domain CHQ57_22325 PF01809 Putative membrane protein insertion efficiency factor CHQ57_22330 PF00825 Ribonuclease P CHQ57_22335 PF00468 Ribosomal protein L34 CHQ57_22345 PF00528 Binding-protein-dependent transport system inner membrane component CHQ57_22350 PF00497 Bacterial extracellular solute-binding proteins, family 3