locus-tag	class	description
CHQ57_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CHQ57_00010	COG0592	DNA-directed DNA polymerase activity
CHQ57_00020	COG0187	DNA topoisomerase II activity
CHQ57_00035	COG2378	regulation of single-species biofilm formation
CHQ57_00040	COG0071	Belongs to the small heat shock protein (HSP20) family
CHQ57_00045	COG0071	Belongs to the small heat shock protein (HSP20) family
CHQ57_00050	COG3977	Valine--pyruvate aminotransferase
CHQ57_00065	COG2814	Major facilitator Superfamily
CHQ57_00070	COG0745	RESPONSE REGULATOR receiver
CHQ57_00075	COG2205	protein histidine kinase activity
CHQ57_00100	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CHQ57_00105	COG4191	Histidine kinase
CHQ57_00105	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_00125	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_00130	COG1309	transcriptional regulator
CHQ57_00160	COG0561	phosphatase activity
CHQ57_00165	COG2267	carboxylic ester hydrolase activity
CHQ57_00170	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CHQ57_00175	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CHQ57_00180	COG1758	RNA polymerase activity
CHQ57_00185	COG0194	GDP metabolic process
CHQ57_00195	COG0859	PFAM glycosyl transferase family 9
CHQ57_00200	COG3642	lipopolysaccharide core region biosynthetic process
CHQ57_00240	COG0589	response to stress
CHQ57_00245	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CHQ57_00250	COG3706	GGDEF domain
CHQ57_00255	COG1528	Iron-storage protein
CHQ57_00260	COG2081	HI0933 family
CHQ57_00290	COG3188	usher protein
CHQ57_00320	COG2205	protein histidine kinase activity
CHQ57_00320	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_00330	COG3275	phosphorelay sensor kinase activity
CHQ57_00335	COG3279	Response regulator of the LytR AlgR family
CHQ57_00340	COG2223	nitrite transmembrane transporter activity
CHQ57_00345	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CHQ57_00365	COG0583	DNA-binding transcription factor activity
CHQ57_00375	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CHQ57_00420	COG0583	DNA-binding transcription factor activity
CHQ57_00425	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CHQ57_00430	COG0166	Belongs to the GPI family
CHQ57_00440	COG0668	transmembrane transport
CHQ57_00445	COG1309	transcriptional regulator
CHQ57_00450	COG0756	dUTP diphosphatase activity
CHQ57_00455	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CHQ57_00460	COG2003	Belongs to the UPF0758 family
CHQ57_00465	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CHQ57_00470	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CHQ57_00480	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CHQ57_00485	COG2990	Protein conserved in bacteria
CHQ57_00490	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CHQ57_00495	COG0859	PFAM glycosyl transferase family 9
CHQ57_00500	COG0463	Glycosyl transferase, family 2
CHQ57_00505	COG0859	PFAM glycosyl transferase family 9
CHQ57_00510	COG1519	Transferase
CHQ57_00525	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_00530	COG1609	Transcriptional regulator
CHQ57_00535	COG0604	alcohol dehydrogenase
CHQ57_00555	COG1580	Controls the rotational direction of flagella during chemotaxis
CHQ57_00560	COG3161	chorismate lyase activity
CHQ57_00565	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
CHQ57_00570	COG2937	Belongs to the GPAT DAPAT family
CHQ57_00575	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CHQ57_00590	COG0534	Mate efflux family protein
CHQ57_00595	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
CHQ57_00600	COG2205	protein histidine kinase activity
CHQ57_00605	COG0745	RESPONSE REGULATOR receiver
CHQ57_00615	COG1045	serine acetyltransferase
CHQ57_00625	COG3074	FtsZ-dependent cytokinesis
CHQ57_00630	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
CHQ57_00645	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CHQ57_00680	COG1609	Transcriptional regulator
CHQ57_00685	COG0385	Bile acid
CHQ57_00690	COG1262	PFAM Formylglycine-generating sulfatase enzyme
CHQ57_00710	COG0583	DNA-binding transcription factor activity
CHQ57_00735	COG0210	DNA helicase
CHQ57_00760	COG1943	Transposase
CHQ57_00775	COG3161	chorismate lyase activity
CHQ57_00790	COG2823	Periplasmic or secreted lipoprotein
CHQ57_00815	COG2391	methyltransferase activity
CHQ57_00825	COG1280	lysine exporter protein (LysE YggA)
CHQ57_00835	COG2962	Rard protein
CHQ57_00845	COG1012	belongs to the aldehyde dehydrogenase family
CHQ57_00865	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CHQ57_00865	COG0519	Catalyzes the synthesis of GMP from XMP
CHQ57_00870	COG0686	Belongs to the AlaDH PNT family
CHQ57_00875	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CHQ57_00895	COG1322	Protein conserved in bacteria
CHQ57_00900	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CHQ57_00905	COG0569	domain protein
CHQ57_00910	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CHQ57_00910	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CHQ57_00915	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CHQ57_00920	COG0242	peptide deformylase activity
CHQ57_00925	COG1652	LysM domain
CHQ57_00930	COG0758	DNA mediated transformation
CHQ57_00935	COG2922	Belongs to the Smg family
CHQ57_00940	COG0551	DNA topoisomerase type I activity
CHQ57_00950	COG0009	L-threonylcarbamoyladenylate synthase
CHQ57_00955	COG0408	coproporphyrinogen oxidase activity
CHQ57_00960	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CHQ57_00970	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CHQ57_00980	COG3078	GTPase activator activity
CHQ57_00990	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CHQ57_00995	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CHQ57_01005	COG3852	Histidine kinase
CHQ57_01015	COG0174	glutamine synthetase
CHQ57_01025	COG1295	ribonuclease BN
CHQ57_01030	COG1490	D-aminoacyl-tRNA deacylase activity
CHQ57_01040	COG0456	acetyltransferase
CHQ57_01050	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CHQ57_01055	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CHQ57_01060	COG2610	gluconate transmembrane transporter activity
CHQ57_01065	COG3265	gluconokinase activity
CHQ57_01070	COG0129	dihydroxy-acid dehydratase activity
CHQ57_01075	COG0800	Aldolase
CHQ57_01090	COG1609	Transcriptional regulator
CHQ57_01100	COG4942	peptidase
CHQ57_01105	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
CHQ57_01110	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CHQ57_01115	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CHQ57_01120	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
CHQ57_01125	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CHQ57_01125	COG0316	Belongs to the HesB IscA family
CHQ57_01130	COG1040	competence protein
CHQ57_01135	COG0596	Alpha beta hydrolase
CHQ57_01160	COG2183	response to ionizing radiation
CHQ57_01165	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CHQ57_01170	COG0745	RESPONSE REGULATOR receiver
CHQ57_01185	COG0051	transcription antitermination factor activity, RNA binding
CHQ57_01190	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CHQ57_01195	COG0088	Forms part of the polypeptide exit tunnel
CHQ57_01200	COG0089	rRNA binding
CHQ57_01205	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CHQ57_01210	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CHQ57_01215	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CHQ57_01220	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CHQ57_01225	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CHQ57_01230	COG0255	Belongs to the universal ribosomal protein uL29 family
CHQ57_01235	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
CHQ57_01240	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CHQ57_01245	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CHQ57_01250	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CHQ57_01255	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
CHQ57_01260	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CHQ57_01265	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CHQ57_01270	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
CHQ57_01275	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CHQ57_01280	COG1841	ribosomal large subunit assembly
CHQ57_01285	COG0200	Binds to the 23S rRNA
CHQ57_01290	COG0201	protein transport
CHQ57_01295	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CHQ57_01300	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CHQ57_01305	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CHQ57_01310	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CHQ57_01315	COG0202	RNA polymerase activity
CHQ57_01320	COG0203	ribosomal protein L17
CHQ57_01375	COG2203	Gaf domain
CHQ57_01375	COG2199	diguanylate cyclase activity
CHQ57_01385	COG3842	ATPase activity
CHQ57_01395	COG1176	ABC-type spermidine putrescine transport system, permease component I
CHQ57_01420	COG0583	DNA-binding transcription factor activity
CHQ57_01430	COG1741	Belongs to the pirin family
CHQ57_01435	COG2259	Doxx family
CHQ57_01440	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
CHQ57_01445	COG1074	ATP-dependent DNA helicase activity
CHQ57_01450	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CHQ57_01470	COG0346	lactoylglutathione lyase activity
CHQ57_01485	COG0004	ammonium transporteR
CHQ57_01490	COG0347	Belongs to the P(II) protein family
CHQ57_01495	COG3706	GGDEF domain
CHQ57_01495	COG0745	RESPONSE REGULATOR receiver
CHQ57_01505	COG0840	transmembrane signaling receptor activity
CHQ57_01525	COG0745	RESPONSE REGULATOR receiver
CHQ57_01535	COG3706	GGDEF domain
CHQ57_01540	COG4771	TonB-dependent receptor
CHQ57_01545	COG1278	Cold shock
CHQ57_01575	COG2197	response regulator
CHQ57_01580	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CHQ57_01635	COG3135	benzoate transporter
CHQ57_01640	COG1396	sequence-specific DNA binding
CHQ57_01680	COG2252	PERMEase
CHQ57_01685	COG2376	Dihydroxyacetone kinase
CHQ57_01690	COG1461	Dihydroxyacetone kinase
CHQ57_01695	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CHQ57_01695	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_01695	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
CHQ57_01705	COG3284	Transcriptional regulator
CHQ57_01715	COG0628	permease
CHQ57_01720	COG0671	phosphoesterase, PA-phosphatase related
CHQ57_01745	COG0753	catalase activity
CHQ57_01750	COG1247	-acetyltransferase
CHQ57_01790	COG0742	ribosomal rna small subunit methyltransferase
CHQ57_01795	COG0552	protein localization to endoplasmic reticulum
CHQ57_01800	COG2884	Cell division ATP-binding protein ftsE
CHQ57_01805	COG2177	Part of the ABC transporter FtsEX involved in
CHQ57_01815	COG0288	reversible hydration of carbon dioxide
CHQ57_01820	COG2188	Transcriptional regulator
CHQ57_01825	COG1228	amidohydrolase
CHQ57_01830	COG0010	Belongs to the arginase family
CHQ57_01835	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
CHQ57_01840	COG2986	histidine ammonia-lyase
CHQ57_01845	COG0387	Pfam Sodium calcium exchanger
CHQ57_01855	COG2200	EAL domain
CHQ57_01855	COG2199	diguanylate cyclase activity
CHQ57_01900	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CHQ57_01905	COG1459	type II secretion system
CHQ57_01925	COG4968	Prepilin-type N-terminal cleavage methylation domain
CHQ57_01950	COG1077	Cell shape determining protein MreB Mrl
CHQ57_01955	COG1792	Involved in formation and maintenance of cell shape
CHQ57_01960	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CHQ57_01965	COG0424	maF-like protein
CHQ57_01970	COG1530	ribonuclease E activity
CHQ57_01975	COG3164	Protein of unknown function
CHQ57_01985	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CHQ57_01990	COG0312	modulator of DNA gyrase
CHQ57_02005	COG0477	Major facilitator Superfamily
CHQ57_02015	COG3437	response regulator, receiver
CHQ57_02020	COG5002	protein histidine kinase activity
CHQ57_02020	COG0784	Response regulator, receiver
CHQ57_02020	COG2205	protein histidine kinase activity
CHQ57_02025	COG2172	sigma factor antagonist activity
CHQ57_02030	COG1366	Belongs to the anti-sigma-factor antagonist family
CHQ57_02040	COG3700	Belongs to the class B bacterial acid phosphatase family
CHQ57_02050	COG1639	'signal transduction protein
CHQ57_02075	COG0189	ligase activity
CHQ57_02085	COG0745	RESPONSE REGULATOR receiver
CHQ57_02105	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
CHQ57_02110	COG0352	thiamine-phosphate diphosphorylase activity
CHQ57_02115	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CHQ57_02125	COG2022	thiamine diphosphate biosynthetic process
CHQ57_02140	COG1943	Transposase
CHQ57_02160	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
CHQ57_02175	COG0814	amino acid
CHQ57_02180	COG3932	Exopolysaccharide synthesis, ExoD
CHQ57_02195	COG1733	regulation of RNA biosynthetic process
CHQ57_02235	COG1494	fructose-1,6-bisphosphatase
CHQ57_02250	COG2959	enzyme of heme biosynthesis
CHQ57_02260	COG0181	hydroxymethylbilane synthase activity
CHQ57_02265	COG3072	Adenylate cyclase
CHQ57_02270	COG0400	carboxylic ester hydrolase activity
CHQ57_02275	COG1965	Belongs to the frataxin family
CHQ57_02280	COG0019	diaminopimelate decarboxylase activity
CHQ57_02285	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
CHQ57_02300	COG1011	Hydrolase
CHQ57_02310	COG0668	transmembrane transport
CHQ57_02320	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
CHQ57_02325	COG0561	phosphatase activity
CHQ57_02340	COG0842	Transport permease protein
CHQ57_02340	COG1129	ABC transporter
CHQ57_02350	COG1546	Belongs to the CinA family
CHQ57_02350	COG1058	Belongs to the CinA family
CHQ57_02360	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
CHQ57_02370	COG1522	sequence-specific DNA binding
CHQ57_02375	COG1368	sulfuric ester hydrolase activity
CHQ57_02395	COG1285	pathogenesis
CHQ57_02415	COG4221	oxidoreductase activity
CHQ57_02430	COG1538	Outer membrane efflux protein
CHQ57_02435	COG0494	nUDIX hydrolase
CHQ57_02440	COG3151	Protein conserved in bacteria
CHQ57_02450	COG3150	esterase
CHQ57_02455	COG1051	belongs to the nudix hydrolase family
CHQ57_02465	COG0187	DNA topoisomerase II activity
CHQ57_02515	COG2259	Doxx family
CHQ57_02520	COG3118	belongs to the thioredoxin family
CHQ57_02540	COG0204	Acyl-transferase
CHQ57_02545	COG1842	Phage shock protein A
CHQ57_02570	COG2962	Rard protein
CHQ57_02575	COG1573	uracil-dna glycosylase
CHQ57_02585	COG0583	DNA-binding transcription factor activity
CHQ57_02590	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CHQ57_02595	COG1121	(ABC) transporter
CHQ57_02600	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
CHQ57_02620	COG0739	heme binding
CHQ57_02635	COG3068	Protein conserved in bacteria
CHQ57_02655	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CHQ57_02660	COG0640	Transcriptional regulator
CHQ57_02675	COG0798	PFAM Bile acid sodium symporter
CHQ57_02680	COG1393	Belongs to the ArsC family
CHQ57_02690	COG2072	flavoprotein involved in K transport
CHQ57_02700	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
CHQ57_02710	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CHQ57_02715	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CHQ57_02725	COG0137	argininosuccinate synthase activity
CHQ57_02730	COG0165	Argininosuccinate lyase
CHQ57_02735	COG0583	DNA-binding transcription factor activity
CHQ57_02745	COG1942	4-Oxalocrotonate Tautomerase
CHQ57_02775	COG0110	maltose O-acetyltransferase activity
CHQ57_02780	COG3174	membrane
CHQ57_02785	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
CHQ57_02795	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
CHQ57_02800	COG4208	sulfate ABC transporter
CHQ57_02805	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
CHQ57_02810	COG0583	DNA-binding transcription factor activity
CHQ57_02815	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CHQ57_02820	COG0765	amino acid transport
CHQ57_02830	COG1126	abc transporter atp-binding protein
CHQ57_02835	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_02845	COG3397	chitin binding
CHQ57_02850	COG0840	transmembrane signaling receptor activity
CHQ57_02870	COG1649	PFAM Uncharacterised BCR, COG1649
CHQ57_02870	COG0726	polysaccharide deacetylase
CHQ57_02875	COG1215	transferase activity, transferring glycosyl groups
CHQ57_02890	COG4946	Tricorn protease homolog
CHQ57_02890	COG0793	Belongs to the peptidase S41A family
CHQ57_02910	COG1328	CTP reductase activity
CHQ57_02915	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CHQ57_02930	COG1448	Aminotransferase
CHQ57_02970	COG0513	Belongs to the DEAD box helicase family
CHQ57_02985	COG3568	Endonuclease Exonuclease Phosphatase
CHQ57_02990	COG0840	transmembrane signaling receptor activity
CHQ57_03005	COG3112	Uncharacterised protein family (UPF0231)
CHQ57_03010	COG3835	regulator
CHQ57_03015	COG2610	gluconate transmembrane transporter activity
CHQ57_03020	COG1929	Belongs to the glycerate kinase type-1 family
CHQ57_03040	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CHQ57_03055	COG0347	Belongs to the P(II) protein family
CHQ57_03065	COG1840	ABC-type Fe3 transport system, periplasmic component
CHQ57_03075	COG3842	ATPase activity
CHQ57_03080	COG2837	iron assimilation
CHQ57_03085	COG1438	arginine binding
CHQ57_03090	COG1126	abc transporter atp-binding protein
CHQ57_03095	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_03100	COG4215	(ABC) transporter
CHQ57_03105	COG4160	amino acid transport
CHQ57_03110	COG0039	L-malate dehydrogenase activity
CHQ57_03115	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
CHQ57_03120	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CHQ57_03120	COG1017	nitric oxide dioxygenase activity
CHQ57_03125	COG1959	2 iron, 2 sulfur cluster binding
CHQ57_03130	COG4536	flavin adenine dinucleotide binding
CHQ57_03135	COG4137	Cytochrome C assembly protein
CHQ57_03140	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CHQ57_03145	COG0228	four-way junction DNA binding
CHQ57_03150	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CHQ57_03155	COG0336	Belongs to the RNA methyltransferase TrmD family
CHQ57_03160	COG0335	large ribosomal subunit rRNA binding
CHQ57_03170	COG3066	DNA modification
CHQ57_03175	COG1051	belongs to the nudix hydrolase family
CHQ57_03185	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CHQ57_03190	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
CHQ57_03195	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CHQ57_03205	COG0583	DNA-binding transcription factor activity
CHQ57_03210	COG0640	Transcriptional regulator
CHQ57_03215	COG0268	Binds directly to 16S ribosomal RNA
CHQ57_03225	COG0196	riboflavin kinase activity
CHQ57_03230	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CHQ57_03235	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CHQ57_03240	COG1047	Peptidyl-prolyl cis-trans
CHQ57_03245	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CHQ57_03260	COG2207	Transcriptional regulator
CHQ57_03265	COG4968	Prepilin-type N-terminal cleavage methylation domain
CHQ57_03300	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CHQ57_03300	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CHQ57_03315	COG1854	S-ribosylhomocysteine lyase activity
CHQ57_03320	COG3706	GGDEF domain
CHQ57_03325	COG0557	exoribonuclease II activity
CHQ57_03330	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CHQ57_03340	COG2153	protein acetylation
CHQ57_03355	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CHQ57_03360	COG1914	H( )-stimulated, divalent metal cation uptake system
CHQ57_03365	COG0360	Binds together with S18 to 16S ribosomal RNA
CHQ57_03370	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CHQ57_03375	COG0359	binds to the 23S rRNA
CHQ57_03405	COG1064	alcohol dehydrogenase
CHQ57_03410	COG1238	metal cluster binding
CHQ57_03415	COG0612	Peptidase, M16
CHQ57_03420	COG2918	glutathione biosynthetic process
CHQ57_03430	COG1022	Amp-dependent synthetase and ligase
CHQ57_03440	COG0456	acetyltransferase
CHQ57_03450	COG0714	Associated with various cellular activities
CHQ57_03470	COG3300	MHYT domain
CHQ57_03470	COG5001	Diguanylate cyclase
CHQ57_03475	COG3706	GGDEF domain
CHQ57_03475	COG0745	RESPONSE REGULATOR receiver
CHQ57_03480	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CHQ57_03490	COG0456	acetyltransferase
CHQ57_03500	COG1902	pentaerythritol trinitrate reductase activity
CHQ57_03510	COG0442	prolyl-tRNA aminoacylation
CHQ57_03515	COG0840	transmembrane signaling receptor activity
CHQ57_03520	COG0632	four-way junction helicase activity
CHQ57_03525	COG2255	four-way junction helicase activity
CHQ57_03535	COG1271	oxidase subunit
CHQ57_03540	COG1294	oxidase, subunit
CHQ57_03545	COG4890	Cyd operon protein YbgT
CHQ57_03550	COG3790	cyd operon protein YbgE
CHQ57_03555	COG0824	Thioesterase
CHQ57_03560	COG0811	peptide transport
CHQ57_03575	COG0823	Involved in the tonB-independent uptake of proteins
CHQ57_03580	COG2885	chlorophyll binding
CHQ57_03585	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
CHQ57_03660	COG0840	transmembrane signaling receptor activity
CHQ57_03665	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CHQ57_03675	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CHQ57_03680	COG1640	4-alpha-glucanotransferase
CHQ57_03685	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CHQ57_03705	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CHQ57_03710	COG4991	sh3 domain protein
CHQ57_03715	COG0506	proline dehydrogenase activity
CHQ57_03715	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CHQ57_03715	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
CHQ57_03720	COG2816	NAD+ diphosphatase activity
CHQ57_03725	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CHQ57_03730	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
CHQ57_03735	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CHQ57_03740	COG0163	prenyltransferase activity
CHQ57_03755	COG1131	(ABC) transporter
CHQ57_03760	COG0842	Transport permease protein
CHQ57_03770	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CHQ57_03775	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CHQ57_03780	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
CHQ57_03785	COG0617	tRNA 3'-terminal CCA addition
CHQ57_03790	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHQ57_03795	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CHQ57_03800	COG1489	DNA binding
CHQ57_03810	COG1643	Atp-dependent helicase
CHQ57_03820	COG0346	lactoylglutathione lyase activity
CHQ57_03830	COG2076	Multidrug Resistance protein
CHQ57_03835	COG0583	DNA-binding transcription factor activity
CHQ57_03840	COG3437	response regulator, receiver
CHQ57_03840	COG0784	Response regulator, receiver
CHQ57_03850	COG0671	phosphoesterase, PA-phosphatase related
CHQ57_03865	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CHQ57_03870	COG0038	chloride channel
CHQ57_03880	COG0316	Belongs to the HesB IscA family
CHQ57_03925	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
CHQ57_03930	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
CHQ57_03935	COG1178	ABC-type Fe3 transport system permease component
CHQ57_03940	COG4143	(ABC) transporter
CHQ57_03955	COG0066	3-isopropylmalate dehydratase activity
CHQ57_03960	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CHQ57_03965	COG0473	3-isopropylmalate dehydrogenase activity
CHQ57_03970	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CHQ57_03980	COG0671	phosphoesterase, PA-phosphatase related
CHQ57_03995	COG0028	Belongs to the TPP enzyme family
CHQ57_04005	COG0440	acetolactate synthase activity
CHQ57_04015	COG0857	belongs to the CobB CobQ family
CHQ57_04015	COG0280	phosphate acetyltransferase
CHQ57_04020	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CHQ57_04025	COG3092	negative regulation of chromosome organization
CHQ57_04030	COG3013	Belongs to the UPF0304 family
CHQ57_04035	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CHQ57_04040	COG2716	regulation of RNA biosynthetic process
CHQ57_04050	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
CHQ57_04055	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CHQ57_04090	COG0784	Response regulator, receiver
CHQ57_04090	COG2198	Histidine kinase
CHQ57_04090	COG5002	protein histidine kinase activity
CHQ57_04115	COG0840	transmembrane signaling receptor activity
CHQ57_04125	COG1464	Belongs to the NlpA lipoprotein family
CHQ57_04130	COG2011	ABC-type metal ion transport system permease component
CHQ57_04155	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
CHQ57_04155	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CHQ57_04160	COG0802	atpase or kinase
CHQ57_04170	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CHQ57_04175	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CHQ57_04180	COG1923	regulation of RNA biosynthetic process
CHQ57_04185	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CHQ57_04190	COG0330	HflC and HflK could
CHQ57_04195	COG0330	HflC and HflK could
CHQ57_04200	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
CHQ57_04205	COG0142	geranyltranstransferase activity
CHQ57_04210	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CHQ57_04215	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CHQ57_04220	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CHQ57_04230	COG0318	PFAM AMP-dependent synthetase and ligase
CHQ57_04240	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CHQ57_04250	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CHQ57_04265	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CHQ57_04275	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CHQ57_04280	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
CHQ57_04290	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CHQ57_04295	COG3178	'Phosphotransferase
CHQ57_04300	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
CHQ57_04305	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CHQ57_04310	COG2252	PERMEase
CHQ57_04320	COG0488	(ABC) transporter
CHQ57_04325	COG0741	lytic transglycosylase activity
CHQ57_04355	COG3721	Heme iron utilization protein
CHQ57_04360	COG0748	coenzyme F420 binding
CHQ57_04380	COG4771	TonB-dependent receptor
CHQ57_04385	COG2814	Major facilitator Superfamily
CHQ57_04395	COG3655	Transcriptional regulator
CHQ57_04405	COG2205	protein histidine kinase activity
CHQ57_04405	COG2202	Pas domain
CHQ57_04420	COG3397	chitin binding
CHQ57_04425	COG2226	methyltransferase
CHQ57_04430	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CHQ57_04435	COG1765	OsmC-like protein
CHQ57_04450	COG3954	Phosphoribulokinase
CHQ57_04460	COG3089	Belongs to the UPF0270 family
CHQ57_04465	COG2203	Gaf domain
CHQ57_04465	COG5001	Diguanylate cyclase
CHQ57_04465	COG4251	negative regulation of phosphorylation
CHQ57_04465	COG3706	GGDEF domain
CHQ57_04470	COG0429	hydrolase of the alpha beta-hydrolase fold
CHQ57_04475	COG0784	Response regulator, receiver
CHQ57_04475	COG0835	chemotaxis
CHQ57_04485	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
CHQ57_04490	COG1047	Peptidyl-prolyl cis-trans
CHQ57_04495	COG2900	Belongs to the SlyX family
CHQ57_04505	COG0545	Peptidyl-prolyl cis-trans isomerase
CHQ57_04510	COG2204	response regulator
CHQ57_04530	COG0737	Belongs to the 5'-nucleotidase family
CHQ57_04535	COG2200	EAL domain
CHQ57_04550	COG0305	Participates in initiation and elongation during chromosome replication
CHQ57_04555	COG0305	Participates in initiation and elongation during chromosome replication
CHQ57_04560	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CHQ57_04565	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHQ57_04575	COG2203	Gaf domain
CHQ57_04575	COG2200	EAL domain
CHQ57_04575	COG2199	diguanylate cyclase activity
CHQ57_04600	COG2197	response regulator
CHQ57_04630	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CHQ57_04635	COG2201	protein-glutamate methylesterase activity
CHQ57_04640	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CHQ57_04650	COG0840	transmembrane signaling receptor activity
CHQ57_04655	COG0835	chemotaxis
CHQ57_04665	COG0643	Histidine kinase
CHQ57_04665	COG2198	Histidine kinase
CHQ57_04675	COG0745	RESPONSE REGULATOR receiver
CHQ57_04680	COG0840	transmembrane signaling receptor activity
CHQ57_04695	COG1280	lysine exporter protein (LysE YggA)
CHQ57_04700	COG0826	peptidase U32
CHQ57_04710	COG3813	Protein conserved in bacteria
CHQ57_04720	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CHQ57_04735	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CHQ57_04760	COG0300	oxidoreductase activity
CHQ57_04780	COG2610	gluconate transmembrane transporter activity
CHQ57_04785	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CHQ57_04790	COG3622	Belongs to the hyi family
CHQ57_04795	COG0235	Class ii aldolase
CHQ57_04805	COG2084	Dehydrogenase
CHQ57_04810	COG1349	DNA-binding transcription factor activity
CHQ57_04820	COG2133	pyrroloquinoline quinone binding
CHQ57_04860	COG3706	GGDEF domain
CHQ57_04870	COG0840	transmembrane signaling receptor activity
CHQ57_04885	COG4467	Involved in initiation control of chromosome replication
CHQ57_05005	COG2003	Belongs to the UPF0758 family
CHQ57_05050	COG5377	YqaJ viral recombinase family
CHQ57_05080	COG1605	Chorismate mutase
CHQ57_05080	COG0077	Prephenate dehydratase
CHQ57_05110	COG3272	Protein of unknown function (DUF1722)
CHQ57_05115	COG0789	Transcriptional regulator
CHQ57_05120	COG0415	Belongs to the DNA photolyase family
CHQ57_05130	COG0300	oxidoreductase activity
CHQ57_05145	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
CHQ57_05170	COG0783	Belongs to the Dps family
CHQ57_05175	COG1151	hydroxylamine reductase activity
CHQ57_05185	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CHQ57_05195	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CHQ57_05195	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CHQ57_05210	COG3459	Glycosyltransferase 36 associated
CHQ57_05215	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CHQ57_05235	COG0356	it plays a direct role in the translocation of protons across the membrane
CHQ57_05245	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CHQ57_05250	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CHQ57_05255	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CHQ57_05280	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CHQ57_05285	COG1666	GTP binding
CHQ57_05290	COG3248	Nucleoside-binding outer membrane protein
CHQ57_05295	COG2211	Major facilitator Superfamily
CHQ57_05305	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CHQ57_05315	COG2813	Specifically methylates the guanine in position
CHQ57_05320	COG0271	Belongs to the BolA IbaG family
CHQ57_05330	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CHQ57_05335	COG1805	sodium ion transport
CHQ57_05340	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CHQ57_05345	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CHQ57_05350	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
CHQ57_05355	COG2871	sodium ion transport
CHQ57_05360	COG1477	protein flavinylation
CHQ57_05375	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CHQ57_05380	COG0840	transmembrane signaling receptor activity
CHQ57_05385	COG0583	DNA-binding transcription factor activity
CHQ57_05395	COG2363	Small membrane protein
CHQ57_05400	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
CHQ57_05410	COG0473	3-isopropylmalate dehydrogenase activity
CHQ57_05415	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CHQ57_05420	COG1611	Belongs to the LOG family
CHQ57_05425	COG3706	GGDEF domain
CHQ57_05435	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CHQ57_05435	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
CHQ57_05445	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
CHQ57_05470	COG3098	single-species biofilm formation
CHQ57_05475	COG0564	pseudouridine synthase activity
CHQ57_05485	COG4580	involved in the transport of maltose and maltodextrins
CHQ57_05495	COG1263	PTS System
CHQ57_05495	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CHQ57_05505	COG2171	N-acyltransferase activity
CHQ57_05510	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
CHQ57_05515	COG0024	Methionine aminopeptidase
CHQ57_05520	COG0052	Belongs to the universal ribosomal protein uS2 family
CHQ57_05525	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CHQ57_05530	COG0528	UMP kinase activity
CHQ57_05535	COG0233	cytoplasmic translational termination
CHQ57_05540	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CHQ57_05545	COG0575	Belongs to the CDS family
CHQ57_05550	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
CHQ57_05555	COG0750	zinc metalloprotease
CHQ57_05570	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CHQ57_05575	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CHQ57_05580	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CHQ57_05585	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CHQ57_05590	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CHQ57_05600	COG0825	malonyl-CoA metabolic process
CHQ57_05605	COG3710	Transcriptional regulator
CHQ57_05610	COG0531	amino acid
CHQ57_05615	COG1982	Orn Lys Arg decarboxylase major
CHQ57_05620	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
CHQ57_05635	COG0814	amino acid
CHQ57_05640	COG0531	amino acid
CHQ57_05650	COG0488	(ABC) transporter
CHQ57_05660	COG3590	peptidase
CHQ57_05665	COG0037	tRNA processing
CHQ57_05670	COG3706	GGDEF domain
CHQ57_05705	COG0366	Alpha amylase catalytic
CHQ57_05715	COG1881	PFAM PEBP family protein
CHQ57_05725	COG0583	DNA-binding transcription factor activity
CHQ57_05735	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CHQ57_05745	COG0583	DNA-binding transcription factor activity
CHQ57_05750	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_05755	COG0616	signal peptide processing
CHQ57_05760	COG3724	N-succinylarginine dihydrolase activity
CHQ57_05765	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CHQ57_05775	COG0840	transmembrane signaling receptor activity
CHQ57_05785	COG2971	BadF BadG BcrA BcrD
CHQ57_05795	COG4608	Belongs to the ABC transporter superfamily
CHQ57_05800	COG0444	Belongs to the ABC transporter superfamily
CHQ57_05805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CHQ57_05820	COG0784	Response regulator, receiver
CHQ57_05820	COG2205	protein histidine kinase activity
CHQ57_05855	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CHQ57_05860	COG1289	transmembrane transporter activity
CHQ57_05865	COG0303	'Molybdopterin
CHQ57_05870	COG0746	molybdenum cofactor guanylyltransferase activity
CHQ57_05880	COG4662	Binding-protein-dependent transport system inner membrane component
CHQ57_05890	COG2204	response regulator
CHQ57_05895	COG3852	Histidine kinase
CHQ57_05905	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CHQ57_05945	COG3383	formate dehydrogenase (NAD+) activity
CHQ57_05950	COG0437	4 iron, 4 sulfur cluster binding
CHQ57_05965	COG0281	malic enzyme
CHQ57_05975	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_05990	COG2706	6-phosphogluconolactonase activity
CHQ57_05995	COG3264	Mechanosensitive ion channel
CHQ57_05995	COG1196	nuclear chromosome segregation
CHQ57_06000	COG0469	pyruvate kinase activity
CHQ57_06015	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CHQ57_06015	COG4651	solute:proton antiporter activity
CHQ57_06020	COG0405	Gamma-glutamyltransferase
CHQ57_06025	COG2974	May be involved in recombination
CHQ57_06040	COG0419	ATPase involved in DNA repair
CHQ57_06045	COG3038	cytochrome b561
CHQ57_06055	COG3706	GGDEF domain
CHQ57_06060	COG2190	(PTS) system
CHQ57_06070	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_06075	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CHQ57_06100	COG1720	tRNA m6t6A37 methyltransferase activity
CHQ57_06120	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CHQ57_06125	COG4988	ABC transporter
CHQ57_06140	COG0745	RESPONSE REGULATOR receiver
CHQ57_06150	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CHQ57_06165	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
CHQ57_06170	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
CHQ57_06180	COG0083	homoserine kinase activity
CHQ57_06185	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CHQ57_06230	COG3384	dioxygenase
CHQ57_06240	COG1283	sodium-dependent phosphate transmembrane transporter activity
CHQ57_06245	COG0531	amino acid
CHQ57_06255	COG0531	amino acid
CHQ57_06270	COG1396	sequence-specific DNA binding
CHQ57_06270	COG1917	Cupin 2, conserved barrel domain protein
CHQ57_06275	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CHQ57_06305	COG2916	Histone family protein nucleoid-structuring protein H-NS
CHQ57_06315	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CHQ57_06320	COG2375	cellular response to nickel ion
CHQ57_06325	COG1538	Outer membrane efflux protein
CHQ57_06330	COG0577	efflux transmembrane transporter activity
CHQ57_06330	COG1136	(ABC) transporter
CHQ57_06335	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_06345	COG1227	inorganic diphosphatase activity
CHQ57_06350	COG0497	DNA recombination
CHQ57_06355	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CHQ57_06360	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CHQ57_06365	COG0443	Heat shock 70 kDa protein
CHQ57_06370	COG0484	heat shock protein binding
CHQ57_06400	COG0095	Lipoate-protein ligase
CHQ57_06405	COG2233	PERMEase
CHQ57_06410	COG3706	GGDEF domain
CHQ57_06410	COG0745	RESPONSE REGULATOR receiver
CHQ57_06420	COG0534	Mate efflux family protein
CHQ57_06425	COG2207	Transcriptional regulator
CHQ57_06430	COG0281	malic enzyme
CHQ57_06435	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CHQ57_06435	COG2885	chlorophyll binding
CHQ57_06440	COG2885	chlorophyll binding
CHQ57_06440	COG3637	Has lipid A 3-O-deacylase activity. Hydrolyzes the ester bond at the 3 position of lipid A, a bioactive component of lipopolysaccharide (LPS), thereby releasing the primary fatty acyl moiety
CHQ57_06460	COG0733	neurotransmitter:sodium symporter activity
CHQ57_06465	COG1752	Esterase of the alpha-beta hydrolase superfamily
CHQ57_06470	COG3706	GGDEF domain
CHQ57_06475	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_06480	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CHQ57_06490	COG1032	radical SAM domain protein
CHQ57_06530	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
CHQ57_06535	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CHQ57_06540	COG0739	heme binding
CHQ57_06540	COG0741	lytic transglycosylase activity
CHQ57_06540	COG1196	nuclear chromosome segregation
CHQ57_06545	COG0366	Alpha amylase catalytic
CHQ57_06565	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CHQ57_06575	COG0788	formyltetrahydrofolate deformylase activity
CHQ57_06580	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CHQ57_06590	COG3118	belongs to the thioredoxin family
CHQ57_06600	COG0791	NLP P60 protein
CHQ57_06605	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
CHQ57_06620	COG1388	LysM domain
CHQ57_06620	COG1376	ErfK ybiS ycfS ynhG family protein
CHQ57_06630	COG3012	SEC-C Motif Domain Protein
CHQ57_06630	COG3318	Belongs to the UPF0149 family
CHQ57_06645	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CHQ57_06725	COG2003	Belongs to the UPF0758 family
CHQ57_06760	COG5377	YqaJ viral recombinase family
CHQ57_06775	COG3311	Transcriptional regulator
CHQ57_06780	COG4983	Phage plasmid primase, P4 family domain protein
CHQ57_06795	COG2916	Histone family protein nucleoid-structuring protein H-NS
CHQ57_06800	COG0582	viral genome integration into host DNA
CHQ57_06810	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CHQ57_06815	COG2867	negative regulation of translational initiation
CHQ57_06825	COG0702	epimerase
CHQ57_06830	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHQ57_06860	COG4964	Belongs to the GSP D family
CHQ57_06870	COG2894	cell division
CHQ57_06910	COG1454	alcohol dehydrogenase
CHQ57_06915	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
CHQ57_06920	COG0564	pseudouridine synthase activity
CHQ57_06925	COG1957	nucleoside hydrolase
CHQ57_06945	COG0840	transmembrane signaling receptor activity
CHQ57_06950	COG1280	lysine exporter protein (LysE YggA)
CHQ57_06970	COG3263	regulation of cellular component size
CHQ57_06980	COG1876	peptidase activity
CHQ57_06985	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CHQ57_06990	COG1393	Belongs to the ArsC family
CHQ57_06995	COG0583	DNA-binding transcription factor activity
CHQ57_07010	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CHQ57_07015	COG0017	Asparaginyl-tRNA synthetase
CHQ57_07035	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CHQ57_07040	COG0156	8-amino-7-oxononanoate synthase activity
CHQ57_07045	COG1073	alpha beta
CHQ57_07045	COG2226	methyltransferase
CHQ57_07050	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
CHQ57_07055	COG0501	Belongs to the peptidase M48B family
CHQ57_07065	COG3217	Mosc domain protein beta barrel domain protein
CHQ57_07065	COG0633	Ferredoxin
CHQ57_07065	COG3217	Mosc domain protein beta barrel domain protein
CHQ57_07065	COG0633	Ferredoxin
CHQ57_07075	COG0674	pyruvate-flavodoxin oxidoreductase activity
CHQ57_07075	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CHQ57_07075	COG1146	Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions
CHQ57_07075	COG1013	pyruvate-flavodoxin oxidoreductase activity
CHQ57_07080	COG2841	Protein conserved in bacteria
CHQ57_07090	COG0534	Mate efflux family protein
CHQ57_07145	COG0791	NLP P60 protein
CHQ57_07155	COG0583	DNA-binding transcription factor activity
CHQ57_07160	COG0450	alkyl hydroperoxide reductase
CHQ57_07180	COG0500	methyltransferase
CHQ57_07185	COG4106	trans-aconitate 2-methyltransferase activity
CHQ57_07190	COG1801	Protein of unknown function DUF72
CHQ57_07195	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CHQ57_07200	COG0217	transcriptional regulatory protein
CHQ57_07210	COG1846	Transcriptional regulator
CHQ57_07210	COG1940	carbohydrate kinase activity
CHQ57_07215	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CHQ57_07220	COG0363	glucosamine-6-phosphate deaminase activity
CHQ57_07225	COG2190	(PTS) system
CHQ57_07225	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CHQ57_07225	COG1263	PTS System
CHQ57_07235	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHQ57_07240	COG0735	belongs to the Fur family
CHQ57_07250	COG0716	FMN binding
CHQ57_07265	COG0596	Alpha beta hydrolase
CHQ57_07270	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
CHQ57_07275	COG0033	Phosphoglucomutase
CHQ57_07285	COG1846	Transcriptional regulator
CHQ57_07290	COG2951	lytic endotransglycosylase activity
CHQ57_07295	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CHQ57_07300	COG4136	ATPase activity
CHQ57_07305	COG4135	transport system, permease component
CHQ57_07310	COG4134	Bacterial extracellular solute-binding protein
CHQ57_07320	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
CHQ57_07330	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CHQ57_07350	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CHQ57_07360	COG0729	surface antigen
CHQ57_07365	COG2911	Protein conserved in bacteria
CHQ57_07385	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
CHQ57_07410	COG1607	acyl-coa hydrolase
CHQ57_07420	COG3021	interspecies interaction between organisms
CHQ57_07425	COG0741	lytic transglycosylase activity
CHQ57_07425	COG1388	LysM domain
CHQ57_07430	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CHQ57_07435	COG2226	methyltransferase
CHQ57_07440	COG0328	RNA-DNA hybrid ribonuclease activity
CHQ57_07445	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CHQ57_07465	COG3437	response regulator, receiver
CHQ57_07465	COG0784	Response regulator, receiver
CHQ57_07470	COG1960	acyl-CoA dehydrogenase activity
CHQ57_07475	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CHQ57_07480	COG0121	glutamine amidotransferase
CHQ57_07510	COG2197	response regulator
CHQ57_07515	COG3850	Histidine kinase
CHQ57_07520	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CHQ57_07525	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHQ57_07535	COG0243	molybdopterin cofactor binding
CHQ57_07540	COG0437	4 iron, 4 sulfur cluster binding
CHQ57_07545	COG0348	domain, Protein
CHQ57_07555	COG3005	denitrification pathway
CHQ57_07560	COG0521	Mo-molybdopterin cofactor biosynthetic process
CHQ57_07565	COG0315	cyclic pyranopterin monophosphate synthase activity
CHQ57_07570	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
CHQ57_07575	COG0314	molybdopterin synthase activity
CHQ57_07590	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
CHQ57_07595	COG0596	Alpha beta hydrolase
CHQ57_07605	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CHQ57_07610	COG0303	'Molybdopterin
CHQ57_07620	COG0302	gtp cyclohydrolase
CHQ57_07625	COG0840	transmembrane signaling receptor activity
CHQ57_07630	COG2759	Belongs to the formate--tetrahydrofolate ligase family
CHQ57_07640	COG0583	DNA-binding transcription factor activity
CHQ57_07645	COG2353	YceI-like domain
CHQ57_07670	COG2195	Cleaves the N-terminal amino acid of tripeptides
CHQ57_07680	COG1166	arginine decarboxylase activity
CHQ57_07715	COG0346	lactoylglutathione lyase activity
CHQ57_07725	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CHQ57_07730	COG1187	pseudouridine synthase activity
CHQ57_07750	COG0583	DNA-binding transcription factor activity
CHQ57_07770	COG2979	Protein of unknown function (DUF533)
CHQ57_07790	COG1294	oxidase, subunit
CHQ57_07800	COG2814	Major facilitator Superfamily
CHQ57_07805	COG0656	L-ascorbic acid biosynthetic process
CHQ57_07810	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
CHQ57_07835	COG0583	DNA-binding transcription factor activity
CHQ57_07840	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CHQ57_07845	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CHQ57_07850	COG2271	Major facilitator Superfamily
CHQ57_07855	COG1349	DNA-binding transcription factor activity
CHQ57_07865	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CHQ57_07870	COG0584	glycerophosphoryl diester phosphodiesterase
CHQ57_07875	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CHQ57_07880	COG1605	Chorismate mutase
CHQ57_07880	COG0287	Prephenate dehydrogenase
CHQ57_07885	COG0583	DNA-binding transcription factor activity
CHQ57_07890	COG3085	chromosome segregation
CHQ57_07895	COG4574	serine-type endopeptidase inhibitor activity
CHQ57_07915	COG1770	oligopeptidase
CHQ57_07920	COG4771	TonB-dependent receptor
CHQ57_07925	COG3083	sulfuric ester hydrolase activity
CHQ57_07930	COG3082	Protein of unknown function (DUF1414)
CHQ57_07935	COG3081	Nucleoid-associated protein
CHQ57_07940	COG2182	Extracellular solute-binding protein
CHQ57_07945	COG1175	transmembrane transport
CHQ57_07955	COG3842	ATPase activity
CHQ57_07975	COG0425	Belongs to the sulfur carrier protein TusA family
CHQ57_07980	COG4783	chaperone-mediated protein folding
CHQ57_07990	COG1393	Belongs to the ArsC family
CHQ57_08000	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
CHQ57_08005	COG2431	L-lysine efflux transmembrane transporter activity
CHQ57_08020	COG4215	(ABC) transporter
CHQ57_08040	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CHQ57_08050	COG0446	pyridine nucleotide-disulphide oxidoreductase
CHQ57_08060	COG4953	penicillin-binding protein 1C
CHQ57_08070	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CHQ57_08070	COG0301	tRNA thio-modification
CHQ57_08090	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CHQ57_08095	COG1334	flagellar protein FlaG
CHQ57_08130	COG2089	acid synthase
CHQ57_08145	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CHQ57_08150	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
CHQ57_08160	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CHQ57_08165	COG1086	Polysaccharide biosynthesis protein
CHQ57_08170	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CHQ57_08180	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CHQ57_08195	COG0840	transmembrane signaling receptor activity
CHQ57_08200	COG0483	inositol monophosphate 1-phosphatase activity
CHQ57_08210	COG0625	glutathione transferase activity
CHQ57_08220	COG0601	transmembrane transport
CHQ57_08225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CHQ57_08230	COG0444	Belongs to the ABC transporter superfamily
CHQ57_08235	COG2814	Major facilitator Superfamily
CHQ57_08240	COG0583	DNA-binding transcription factor activity
CHQ57_08245	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
CHQ57_08250	COG0243	molybdopterin cofactor binding
CHQ57_08270	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CHQ57_08275	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CHQ57_08280	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CHQ57_08285	COG0509	glycine decarboxylation via glycine cleavage system
CHQ57_08290	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CHQ57_08290	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CHQ57_08315	COG2261	transglycosylase associated protein
CHQ57_08320	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
CHQ57_08330	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CHQ57_08350	COG2801	Transposase and inactivated derivatives
CHQ57_08370	COG3436	PFAM IS66 Orf2 family protein
CHQ57_08395	COG0456	acetyltransferase
CHQ57_08400	COG3039	Transposase
CHQ57_08415	COG2203	Gaf domain
CHQ57_08415	COG2199	diguanylate cyclase activity
CHQ57_08445	COG2119	membrane
CHQ57_08450	COG0023	Translation Initiation Factor
CHQ57_08490	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_08490	COG2205	protein histidine kinase activity
CHQ57_08500	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
CHQ57_08505	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CHQ57_08510	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CHQ57_08515	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CHQ57_08520	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
CHQ57_08525	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CHQ57_08540	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
CHQ57_08545	COG0505	Belongs to the CarA family
CHQ57_08550	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
CHQ57_08555	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CHQ57_08585	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CHQ57_08590	COG0513	Belongs to the DEAD box helicase family
CHQ57_08600	COG4104	PAAR repeat-containing protein
CHQ57_08615	COG0789	Transcriptional regulator
CHQ57_08630	COG0493	'glutamate synthase
CHQ57_08635	COG0069	glutamate synthase activity
CHQ57_08635	COG0070	glutamate synthase
CHQ57_08635	COG0067	glutamate synthase
CHQ57_08640	COG1242	4 iron, 4 sulfur cluster binding
CHQ57_08705	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CHQ57_08710	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CHQ57_08710	COG0574	Belongs to the PEP-utilizing enzyme family
CHQ57_08755	COG1464	Belongs to the NlpA lipoprotein family
CHQ57_08760	COG0671	phosphoesterase, PA-phosphatase related
CHQ57_08765	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CHQ57_08770	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CHQ57_08780	COG0101	tRNA pseudouridine synthase activity
CHQ57_08785	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
CHQ57_08790	COG0285	dihydrofolate synthase activity
CHQ57_08795	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
CHQ57_08800	COG2920	part of a sulfur-relay system
CHQ57_08805	COG1289	transmembrane transporter activity
CHQ57_08810	COG0670	Belongs to the BI1 family
CHQ57_08825	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CHQ57_08830	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_08835	COG0745	RESPONSE REGULATOR receiver
CHQ57_08840	COG5002	protein histidine kinase activity
CHQ57_08845	COG0840	transmembrane signaling receptor activity
CHQ57_08850	COG5001	Diguanylate cyclase
CHQ57_08855	COG0564	pseudouridine synthase activity
CHQ57_08870	COG3508	Involved in the catabolism of homogentisate (2,5- dihydroxyphenylacetate or 2,5-OH-PhAc), a central intermediate in the degradation of phenylalanine and tyrosine. Catalyzes the oxidative ring cleavage of the aromatic ring of homogentisate to yield maleylacetoacetate
CHQ57_08880	COG0625	glutathione transferase activity
CHQ57_08890	COG0367	asparagine synthase
CHQ57_08905	COG0647	UMP catabolic process
CHQ57_08910	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
CHQ57_08915	COG1902	pentaerythritol trinitrate reductase activity
CHQ57_08920	COG1253	flavin adenine dinucleotide binding
CHQ57_08930	COG0247	lactate metabolic process
CHQ57_08930	COG0277	FAD linked oxidase domain protein
CHQ57_08940	COG2050	protein possibly involved in aromatic compounds catabolism
CHQ57_08945	COG0513	Belongs to the DEAD box helicase family
CHQ57_08955	COG5001	Diguanylate cyclase
CHQ57_08955	COG3300	MHYT domain
CHQ57_08960	COG2056	Na+-H+ antiporter family
CHQ57_08970	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CHQ57_08985	COG0346	lactoylglutathione lyase activity
CHQ57_08990	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CHQ57_09000	COG4659	FMN binding
CHQ57_09005	COG4658	electron transport chain
CHQ57_09015	COG2878	Part of a membrane complex involved in electron transport
CHQ57_09020	COG4657	Part of a membrane complex involved in electron transport
CHQ57_09025	COG0697	spore germination
CHQ57_09040	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
CHQ57_09045	COG1288	antiporter activity
CHQ57_09050	COG0436	Aminotransferase
CHQ57_09060	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
CHQ57_09065	COG2027	D-alanyl-D-alanine carboxypeptidase
CHQ57_09070	COG1061	Type III restriction enzyme res subunit
CHQ57_09075	COG1566	PFAM secretion protein HlyD family protein
CHQ57_09085	COG1966	Carbon starvation protein
CHQ57_09090	COG3279	Response regulator of the LytR AlgR family
CHQ57_09095	COG3275	phosphorelay sensor kinase activity
CHQ57_09100	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
CHQ57_09100	COG2199	diguanylate cyclase activity
CHQ57_09105	COG1454	alcohol dehydrogenase
CHQ57_09105	COG1012	belongs to the aldehyde dehydrogenase family
CHQ57_09115	COG2095	MarC family integral membrane protein
CHQ57_09125	COG0601	transmembrane transport
CHQ57_09130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CHQ57_09135	COG0444	Belongs to the ABC transporter superfamily
CHQ57_09150	COG0861	Integral membrane protein TerC family
CHQ57_09155	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CHQ57_09165	COG1301	dicarboxylic acid transport
CHQ57_09180	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CHQ57_09195	COG0537	adenosine 5'-monophosphoramidase activity
CHQ57_09230	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHQ57_09235	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHQ57_09255	COG1007	ATP synthesis coupled electron transport
CHQ57_09260	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09270	COG0713	ATP synthesis coupled electron transport
CHQ57_09275	COG0839	Belongs to the complex I subunit 6 family
CHQ57_09280	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09285	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
CHQ57_09290	COG1034	ATP synthesis coupled electron transport
CHQ57_09305	COG0649	NAD binding
CHQ57_09305	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09310	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09315	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09335	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CHQ57_09350	COG4597	amino acid ABC transporter
CHQ57_09355	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_09360	COG0765	amino acid transport
CHQ57_09365	COG1126	abc transporter atp-binding protein
CHQ57_09375	COG0724	RNA recognition motif
CHQ57_09380	COG4989	oxidoreductase activity
CHQ57_09405	COG0589	response to stress
CHQ57_09420	COG3437	response regulator, receiver
CHQ57_09425	COG0583	DNA-binding transcription factor activity
CHQ57_09435	COG5001	Diguanylate cyclase
CHQ57_09435	COG3300	MHYT domain
CHQ57_09455	COG2814	Major facilitator Superfamily
CHQ57_09460	COG0583	DNA-binding transcription factor activity
CHQ57_09470	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CHQ57_09475	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CHQ57_09480	COG0539	negative regulation of cytoplasmic translation
CHQ57_09485	COG0776	regulation of translation
CHQ57_09495	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
CHQ57_09500	COG0284	orotidine-5'-phosphate decarboxylase activity
CHQ57_09515	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CHQ57_09520	COG0602	queuosine metabolic process
CHQ57_09525	COG3530	Putative quorum-sensing-regulated virulence factor
CHQ57_09530	COG2096	Adenosyltransferase
CHQ57_09535	COG2916	Histone family protein nucleoid-structuring protein H-NS
CHQ57_09540	COG1757	Na H antiporter
CHQ57_09545	COG1435	thymidine kinase activity
CHQ57_09570	COG4974	Belongs to the 'phage' integrase family
CHQ57_09590	COG2801	Transposase and inactivated derivatives
CHQ57_09595	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHQ57_09600	COG4221	oxidoreductase activity
CHQ57_09605	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CHQ57_09625	COG2176	DNA-directed DNA polymerase activity
CHQ57_09630	COG0517	IMP dehydrogenase activity
CHQ57_09635	COG0823	Involved in the tonB-independent uptake of proteins
CHQ57_09640	COG1414	Transcriptional regulator
CHQ57_09650	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_09670	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CHQ57_09675	COG0800	Aldolase
CHQ57_09680	COG1917	Cupin 2, conserved barrel domain protein
CHQ57_09685	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
CHQ57_09700	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CHQ57_09710	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
CHQ57_09715	COG0437	4 iron, 4 sulfur cluster binding
CHQ57_09720	COG5557	Pfam Polysulphide reductase, NrfD
CHQ57_09725	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
CHQ57_09730	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
CHQ57_09735	COG1773	rubredoxin
CHQ57_09740	COG0747	negative chemotaxis
CHQ57_09745	COG0601	transmembrane transport
CHQ57_09750	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CHQ57_09760	COG1124	(ABC) transporter
CHQ57_09765	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
CHQ57_09770	COG0375	protein maturation
CHQ57_09775	COG0309	Hydrogenase expression formation protein (HypE)
CHQ57_09785	COG0298	carbon dioxide binding
CHQ57_09790	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
CHQ57_09800	COG1921	L-seryl-tRNASec selenium transferase activity
CHQ57_09815	COG3260	NADH ubiquinone oxidoreductase 20
CHQ57_09820	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_09825	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
CHQ57_09825	COG3261	NADH dehydrogenase
CHQ57_09830	COG0650	Formate hydrogenlyase subunit 4
CHQ57_09835	COG0651	ATP synthesis coupled electron transport
CHQ57_09840	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHQ57_09860	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
CHQ57_09885	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CHQ57_09890	COG0326	Molecular chaperone. Has ATPase activity
CHQ57_09900	COG0563	adenylate kinase activity
CHQ57_09905	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
CHQ57_09910	COG3788	relative of glutathione S-transferase, MAPEG superfamily
CHQ57_09920	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CHQ57_09925	COG0840	transmembrane signaling receptor activity
CHQ57_09940	COG3300	MHYT domain
CHQ57_09940	COG5001	Diguanylate cyclase
CHQ57_09945	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CHQ57_09965	COG1021	2,3-dihydroxybenzoate-AMP ligase
CHQ57_09970	COG3433	isochorismatase activity
CHQ57_09970	COG1535	isochorismatase
CHQ57_09975	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CHQ57_09980	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_09990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CHQ57_10000	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CHQ57_10005	COG2977	Belongs to the P-Pant transferase superfamily
CHQ57_10010	COG1120	ATPase activity
CHQ57_10015	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CHQ57_10020	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CHQ57_10025	COG4771	TonB-dependent receptor
CHQ57_10045	COG0598	Magnesium transport protein CorA
CHQ57_10065	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
CHQ57_10070	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CHQ57_10075	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
CHQ57_10090	COG1570	exodeoxyribonuclease VII activity
CHQ57_10095	COG3038	cytochrome b561
CHQ57_10115	COG0516	GMP reductase activity
CHQ57_10115	COG0517	IMP dehydrogenase activity
CHQ57_10120	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CHQ57_10120	COG0519	Catalyzes the synthesis of GMP from XMP
CHQ57_10170	COG1025	Belongs to the peptidase M16 family
CHQ57_10175	COG2062	phosphohistidine phosphatase, SixA
CHQ57_10185	COG0697	spore germination
CHQ57_10190	COG4166	transmembrane transport
CHQ57_10195	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
CHQ57_10210	COG2501	S4 domain
CHQ57_10245	COG2329	Antibiotic biosynthesis monooxygenase
CHQ57_10275	COG1742	UPF0060 membrane protein
CHQ57_10290	COG0513	Belongs to the DEAD box helicase family
CHQ57_10295	COG0386	Belongs to the glutathione peroxidase family
CHQ57_10305	COG1181	Belongs to the D-alanine--D-alanine ligase family
CHQ57_10320	COG0730	response to heat
CHQ57_10325	COG0583	DNA-binding transcription factor activity
CHQ57_10340	COG3593	DNA synthesis involved in DNA repair
CHQ57_10400	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CHQ57_10405	COG1011	Hydrolase
CHQ57_10410	COG1473	amidohydrolase
CHQ57_10425	COG0205	6-phosphofructokinase activity
CHQ57_10435	COG1434	Gram-negative-bacterium-type cell wall biogenesis
CHQ57_10440	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CHQ57_10450	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
CHQ57_10455	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
CHQ57_10480	COG0242	peptide deformylase activity
CHQ57_10520	COG4681	YaeQ
CHQ57_10540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CHQ57_10555	COG3134	Outer membrane lipoprotein
CHQ57_10565	COG1288	antiporter activity
CHQ57_10570	COG0318	PFAM AMP-dependent synthetase and ligase
CHQ57_10575	COG2378	regulation of single-species biofilm formation
CHQ57_10585	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CHQ57_10585	COG0140	phosphoribosyl-ATP diphosphatase activity
CHQ57_10590	COG0107	imidazoleglycerol-phosphate synthase activity
CHQ57_10595	COG2205	protein histidine kinase activity
CHQ57_10595	COG2198	Histidine kinase
CHQ57_10595	COG0784	Response regulator, receiver
CHQ57_10605	COG3437	response regulator, receiver
CHQ57_10610	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CHQ57_10615	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CHQ57_10620	COG0131	Imidazoleglycerol-phosphate dehydratase
CHQ57_10620	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CHQ57_10625	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CHQ57_10630	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CHQ57_10635	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CHQ57_10645	COG1199	ATP-dependent helicase activity
CHQ57_10650	COG1214	PFAM Peptidase M22, glycoprotease
CHQ57_10660	COG2267	carboxylic ester hydrolase activity
CHQ57_10665	COG0318	PFAM AMP-dependent synthetase and ligase
CHQ57_10685	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CHQ57_10690	COG2832	Protein of unknown function (DUF454)
CHQ57_10695	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CHQ57_10700	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CHQ57_10705	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CHQ57_10715	COG2197	response regulator
CHQ57_10725	COG1643	Atp-dependent helicase
CHQ57_10735	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CHQ57_10740	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CHQ57_10745	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CHQ57_10750	COG0709	Synthesizes selenophosphate from selenide and ATP
CHQ57_10765	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CHQ57_10775	COG1254	Belongs to the acylphosphatase family
CHQ57_10780	COG0625	glutathione transferase activity
CHQ57_10785	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHQ57_10785	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHQ57_10790	COG0489	protein tyrosine kinase activity
CHQ57_10795	COG0572	uridine kinase
CHQ57_10800	COG0717	Belongs to the dCTP deaminase family
CHQ57_10805	COG0306	phosphate transporter
CHQ57_10810	COG1530	ribonuclease E activity
CHQ57_10820	COG0546	phosphoglycolate phosphatase activity
CHQ57_10825	COG0424	maF-like protein
CHQ57_10830	COG1399	metal-binding, possibly nucleic acid-binding protein
CHQ57_10835	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CHQ57_10840	COG0416	fatty acid biosynthetic process
CHQ57_10845	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CHQ57_10855	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_10860	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHQ57_10865	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHQ57_10870	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CHQ57_10875	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CHQ57_10880	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CHQ57_10885	COG0470	DNA polymerase III
CHQ57_10890	COG0084	hydrolase, TatD family'
CHQ57_10905	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CHQ57_10905	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CHQ57_10910	COG3008	intermembrane lipid transfer
CHQ57_10915	COG2995	paraquat-inducible protein a
CHQ57_10925	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
CHQ57_10930	COG0372	Belongs to the citrate synthase family
CHQ57_10975	COG4221	oxidoreductase activity
CHQ57_10985	COG3141	response to X-ray
CHQ57_10995	COG1067	ATP-dependent peptidase activity
CHQ57_11000	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CHQ57_11025	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
CHQ57_11025	COG0116	Belongs to the methyltransferase superfamily
CHQ57_11035	COG0167	dihydroorotate dehydrogenase activity
CHQ57_11040	COG2902	Dehydrogenase
CHQ57_11050	COG0308	aminopeptidase N
CHQ57_11070	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
CHQ57_11075	COG1956	GAF domain-containing protein
CHQ57_11085	COG3278	Belongs to the heme-copper respiratory oxidase family
CHQ57_11100	COG2010	Cytochrome c
CHQ57_11110	COG2217	Heavy metal translocating P-type atpase
CHQ57_11125	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CHQ57_11130	COG0589	response to stress
CHQ57_11135	COG0037	tRNA processing
CHQ57_11150	COG0625	glutathione transferase activity
CHQ57_11155	COG1869	D-ribose catabolic process
CHQ57_11160	COG1129	ABC transporter
CHQ57_11165	COG1172	Belongs to the binding-protein-dependent transport system permease family
CHQ57_11170	COG1879	ABC-type sugar transport system periplasmic component
CHQ57_11175	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CHQ57_11180	COG1609	Transcriptional regulator
CHQ57_11185	COG2199	diguanylate cyclase activity
CHQ57_11195	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CHQ57_11215	COG0776	regulation of translation
CHQ57_11220	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHQ57_11220	COG0072	phenylalanine-tRNA ligase activity
CHQ57_11225	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CHQ57_11230	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CHQ57_11235	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CHQ57_11240	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
CHQ57_11245	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CHQ57_11265	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
CHQ57_11275	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CHQ57_11280	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CHQ57_11285	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
CHQ57_11290	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
CHQ57_11295	COG3313	Fe-S protein
CHQ57_11300	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
CHQ57_11300	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_11300	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_11305	COG1105	Belongs to the carbohydrate kinase PfkB family
CHQ57_11310	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_11310	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_11315	COG1609	Transcriptional regulator
CHQ57_11320	COG0814	amino acid
CHQ57_11330	COG5654	RES domain protein
CHQ57_11335	COG0513	Belongs to the DEAD box helicase family
CHQ57_11345	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CHQ57_11350	COG2890	protein-(glutamine-N5) methyltransferase activity
CHQ57_11355	COG2840	Smr protein MutS2
CHQ57_11360	COG3706	GGDEF domain
CHQ57_11390	COG2824	Alkylphosphonate utilization operon protein PhnA
CHQ57_11395	COG1024	Enoyl-CoA hydratase
CHQ57_11395	COG1250	3-hydroxyacyl-CoA dehydrogenase
CHQ57_11400	COG0183	Belongs to the thiolase family
CHQ57_11405	COG0714	Associated with various cellular activities
CHQ57_11435	COG1595	DNA-templated transcription, initiation
CHQ57_11445	COG2067	long-chain fatty acid transport protein
CHQ57_11450	COG2067	long-chain fatty acid transport protein
CHQ57_11455	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CHQ57_11475	COG3123	guanosine phosphorylase activity
CHQ57_11480	COG1760	l-serine dehydratase
CHQ57_11485	COG1760	l-serine dehydratase
CHQ57_11490	COG2951	lytic endotransglycosylase activity
CHQ57_11495	COG3100	YcgL domain-containing protein
CHQ57_11500	COG0850	regulation of cytokinetic process
CHQ57_11505	COG2894	cell division
CHQ57_11510	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
CHQ57_11520	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CHQ57_11560	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CHQ57_11565	COG0697	spore germination
CHQ57_11570	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
CHQ57_11575	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CHQ57_11585	COG0307	riboflavin synthase, alpha
CHQ57_11595	COG0534	Mate efflux family protein
CHQ57_11630	COG0417	DNA replication proofreading
CHQ57_11640	COG2199	diguanylate cyclase activity
CHQ57_11640	COG2203	Gaf domain
CHQ57_11655	COG1560	Kdo2-lipid A biosynthetic process
CHQ57_11660	COG1560	Kdo2-lipid A biosynthetic process
CHQ57_11670	COG0583	DNA-binding transcription factor activity
CHQ57_11675	COG0673	inositol 2-dehydrogenase activity
CHQ57_11680	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CHQ57_11685	COG0583	DNA-binding transcription factor activity
CHQ57_11700	COG0583	DNA-binding transcription factor activity
CHQ57_11705	COG1879	ABC-type sugar transport system periplasmic component
CHQ57_11710	COG1129	ABC transporter
CHQ57_11715	COG1172	Belongs to the binding-protein-dependent transport system permease family
CHQ57_11720	COG1172	Belongs to the binding-protein-dependent transport system permease family
CHQ57_11725	COG3706	GGDEF domain
CHQ57_11725	COG2203	Gaf domain
CHQ57_11725	COG4251	negative regulation of phosphorylation
CHQ57_11725	COG5001	Diguanylate cyclase
CHQ57_11730	COG2823	Periplasmic or secreted lipoprotein
CHQ57_11765	COG2826	transposase and inactivated derivatives, IS30 family
CHQ57_11780	COG0582	viral genome integration into host DNA
CHQ57_11805	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CHQ57_11815	COG2003	Belongs to the UPF0758 family
CHQ57_11825	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CHQ57_11855	COG0730	response to heat
CHQ57_11865	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_11875	COG1024	Enoyl-CoA hydratase
CHQ57_11880	COG1024	Enoyl-CoA hydratase
CHQ57_11885	COG1960	acyl-CoA dehydrogenase activity
CHQ57_11895	COG1960	acyl-CoA dehydrogenase activity
CHQ57_11905	COG1024	Enoyl-CoA hydratase
CHQ57_11935	COG1584	GPR1 FUN34 yaaH family protein
CHQ57_11950	COG1115	amino acid carrier protein
CHQ57_11955	COG1024	Enoyl-CoA hydratase
CHQ57_11955	COG1250	3-hydroxyacyl-CoA dehydrogenase
CHQ57_11965	COG0517	IMP dehydrogenase activity
CHQ57_11990	COG0488	(ABC) transporter
CHQ57_11995	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CHQ57_12000	COG0776	regulation of translation
CHQ57_12005	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CHQ57_12010	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CHQ57_12015	COG0740	serine-type endopeptidase activity
CHQ57_12020	COG0544	peptidyl-prolyl cis-trans isomerase activity
CHQ57_12035	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
CHQ57_12040	COG4591	ABC-type transport system involved in lipoprotein release permease component
CHQ57_12045	COG1136	(ABC) transporter
CHQ57_12050	COG4591	ABC-type transport system involved in lipoprotein release permease component
CHQ57_12060	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CHQ57_12085	COG1132	(ABC) transporter
CHQ57_12090	COG1132	(ABC) transporter
CHQ57_12100	COG3118	belongs to the thioredoxin family
CHQ57_12105	COG0471	metal ion transport
CHQ57_12110	COG0058	SHG alpha-glucan phosphorylase activity
CHQ57_12150	COG0814	amino acid
CHQ57_12155	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
CHQ57_12160	COG0514	ATP-dependent DNA helicase (RecQ)
CHQ57_12180	COG2719	SpoVR family
CHQ57_12185	COG2186	Transcriptional regulator
CHQ57_12190	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
CHQ57_12195	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
CHQ57_12200	COG0586	Pfam SNARE associated Golgi protein
CHQ57_12210	COG0556	nucleotide-excision repair
CHQ57_12225	COG0569	domain protein
CHQ57_12225	COG2985	domain, Protein
CHQ57_12230	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CHQ57_12250	COG4565	transcriptional regulatory protein
CHQ57_12255	COG3290	protein histidine kinase activity
CHQ57_12265	COG0840	transmembrane signaling receptor activity
CHQ57_12270	COG3012	SEC-C Motif Domain Protein
CHQ57_12275	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CHQ57_12280	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
CHQ57_12285	COG0247	lactate metabolic process
CHQ57_12295	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
CHQ57_12300	COG0437	4 iron, 4 sulfur cluster binding
CHQ57_12305	COG3301	Polysulphide reductase, NrfD
CHQ57_12320	COG3088	subunit of a heme lyase
CHQ57_12320	COG4235	cytochrome complex assembly
CHQ57_12335	COG3033	Beta-eliminating lyase
CHQ57_12345	COG3046	protein related to deoxyribodipyrimidine photolyase
CHQ57_12350	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CHQ57_12375	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CHQ57_12380	COG0583	DNA-binding transcription factor activity
CHQ57_12390	COG4774	siderophore transport
CHQ57_12395	COG2207	Transcriptional regulator
CHQ57_12395	COG3708	Transcriptional regulator
CHQ57_12405	COG0583	DNA-binding transcription factor activity
CHQ57_12410	COG2910	NAD(P)H-binding
CHQ57_12425	COG0612	Peptidase, M16
CHQ57_12430	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CHQ57_12435	COG1944	ATP diphosphatase activity
CHQ57_12440	COG2116	formate transmembrane transporter activity
CHQ57_12445	COG1882	Formate acetyltransferase
CHQ57_12465	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CHQ57_12470	COG0045	succinate-CoA ligase (ADP-forming) activity
CHQ57_12475	COG0508	dehydrogenase complex catalyzes the overall conversion of
CHQ57_12480	COG0567	Dehydrogenase, E1 component
CHQ57_12490	COG1053	succinate dehydrogenase
CHQ57_12495	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
CHQ57_12500	COG2009	succinate dehydrogenase
CHQ57_12520	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHQ57_12525	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CHQ57_12525	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
CHQ57_12535	COG3069	C4-dicarboxylate transmembrane transporter activity
CHQ57_12550	COG1451	nucleotide metabolic process
CHQ57_12565	COG0254	rRNA binding
CHQ57_12570	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CHQ57_12575	COG0469	pyruvate kinase activity
CHQ57_12585	COG1874	Beta-galactosidase
CHQ57_12590	COG3867	Arabinogalactan endo-beta-1,4-galactanase
CHQ57_12595	COG3833	ABC-type maltose transport systems, permease component
CHQ57_12600	COG1175	transmembrane transport
CHQ57_12640	COG4580	involved in the transport of maltose and maltodextrins
CHQ57_12645	COG1609	Transcriptional regulator
CHQ57_12650	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CHQ57_12655	COG1085	galactose-1-phosphate uridylyltransferase
CHQ57_12660	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CHQ57_12670	COG1172	Belongs to the binding-protein-dependent transport system permease family
CHQ57_12675	COG1129	ABC transporter
CHQ57_12680	COG1879	ABC-type sugar transport system periplasmic component
CHQ57_12685	COG1069	ribulokinase activity
CHQ57_12695	COG2160	L-arabinose isomerase activity
CHQ57_12700	COG0583	DNA-binding transcription factor activity
CHQ57_12705	COG0436	Aminotransferase
CHQ57_12710	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CHQ57_12725	COG2925	Exonuclease
CHQ57_12735	COG3345	alpha-galactosidase
CHQ57_12740	COG1380	Effector of murein hydrolase LrgA
CHQ57_12745	COG1346	cytolysis
CHQ57_12750	COG0295	cytidine deaminase activity
CHQ57_12755	COG1022	Amp-dependent synthetase and ligase
CHQ57_12775	COG2199	diguanylate cyclase activity
CHQ57_12790	COG2154	pterin-4-alpha-carbinolamine dehydratase
CHQ57_12800	COG3768	UPF0283 membrane protein
CHQ57_12805	COG3106	COG3106 Predicted ATPase
CHQ57_12820	COG1842	Phage shock protein A
CHQ57_12825	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
CHQ57_12835	COG4168	peptide transport system, permease
CHQ57_12840	COG4171	peptide transport system, permease
CHQ57_12845	COG4172	Belongs to the ABC transporter superfamily
CHQ57_12850	COG4172	Belongs to the ABC transporter superfamily
CHQ57_12860	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CHQ57_12865	COG1286	toxin biosynthetic process
CHQ57_12870	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CHQ57_12875	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CHQ57_12880	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CHQ57_12895	COG0686	Belongs to the AlaDH PNT family
CHQ57_12900	COG0492	ferredoxin-NADP+ reductase activity
CHQ57_12905	COG3706	GGDEF domain
CHQ57_12910	COG3134	Outer membrane lipoprotein
CHQ57_12915	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
CHQ57_12920	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
CHQ57_12925	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CHQ57_12930	COG0542	response to heat
CHQ57_12935	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
CHQ57_12940	COG1278	Cold shock
CHQ57_12945	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
CHQ57_12975	COG2801	Transposase and inactivated derivatives
CHQ57_12985	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CHQ57_13025	COG2801	Transposase and inactivated derivatives
CHQ57_13155	COG1278	Cold shock
CHQ57_13220	COG0659	secondary active sulfate transmembrane transporter activity
CHQ57_13255	COG0672	)-iron permease
CHQ57_13280	COG2814	Major facilitator Superfamily
CHQ57_13295	COG1136	(ABC) transporter
CHQ57_13315	COG1285	pathogenesis
CHQ57_13330	COG0596	Alpha beta hydrolase
CHQ57_13350	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CHQ57_13355	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
CHQ57_13355	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CHQ57_13360	COG0527	aspartate kinase activity
CHQ57_13370	COG1368	sulfuric ester hydrolase activity
CHQ57_13375	COG1619	proteins homologs of microcin C7 resistance protein MccF
CHQ57_13385	COG0393	Putative heavy-metal-binding
CHQ57_13390	COG1252	NADH dehydrogenase
CHQ57_13410	COG2354	Protein conserved in bacteria
CHQ57_13425	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CHQ57_13425	COG0047	phosphoribosylformylglycinamidine synthase activity
CHQ57_13430	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CHQ57_13440	COG1645	bacterial-type flagellum-dependent swarming motility
CHQ57_13445	COG1160	GTP binding
CHQ57_13450	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHQ57_13455	COG2976	Protein conserved in bacteria
CHQ57_13460	COG0124	histidyl-tRNA synthetase
CHQ57_13470	COG1426	Protein conserved in bacteria
CHQ57_13480	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CHQ57_13485	COG0105	UTP biosynthetic process
CHQ57_13490	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CHQ57_13500	COG0633	Ferredoxin
CHQ57_13505	COG0443	Heat shock 70 kDa protein
CHQ57_13510	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
CHQ57_13520	COG0822	iron-sulfur transferase activity
CHQ57_13525	COG1104	cysteine desulfurase activity
CHQ57_13530	COG1959	2 iron, 2 sulfur cluster binding
CHQ57_13570	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHQ57_13575	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CHQ57_13580	COG1862	Preprotein translocase
CHQ57_13585	COG0343	queuine tRNA-ribosyltransferase activity
CHQ57_13590	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CHQ57_13595	COG0517	IMP dehydrogenase activity
CHQ57_13600	COG0450	alkyl hydroperoxide reductase
CHQ57_13605	COG3634	alkyl hydroperoxide reductase activity
CHQ57_13720	COG3039	Transposase
CHQ57_13750	COG0322	excinuclease ABC activity
CHQ57_13755	COG2197	response regulator
CHQ57_13760	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
CHQ57_13765	COG2835	tetraacyldisaccharide 4'-kinase activity
CHQ57_13770	COG1663	tetraacyldisaccharide 4'-kinase activity
CHQ57_13775	COG1132	(ABC) transporter
CHQ57_13780	COG0658	competence protein
CHQ57_13780	COG2333	competence protein COMEC
CHQ57_13795	COG0433	COG0433 Predicted ATPase
CHQ57_13800	COG1448	Aminotransferase
CHQ57_13810	COG3203	Forms passive diffusion pores that allow small molecular weight hydrophilic materials across the outer membrane
CHQ57_13815	COG1199	ATP-dependent helicase activity
CHQ57_13825	COG0123	including yeast histone deacetylase and acetoin utilization protein
CHQ57_13830	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CHQ57_13835	COG1785	Belongs to the alkaline phosphatase family
CHQ57_13855	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CHQ57_13870	COG2271	Major facilitator Superfamily
CHQ57_13875	COG3706	GGDEF domain
CHQ57_13880	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CHQ57_13885	COG0765	amino acid transport
CHQ57_13890	COG1126	abc transporter atp-binding protein
CHQ57_13900	COG0531	amino acid
CHQ57_13915	COG1253	flavin adenine dinucleotide binding
CHQ57_13920	COG0704	Plays a role in the regulation of phosphate uptake
CHQ57_13930	COG0581	inorganic phosphate transmembrane transporter activity
CHQ57_13935	COG0573	inorganic phosphate transmembrane transporter activity
CHQ57_13940	COG0590	tRNA wobble adenosine to inosine editing
CHQ57_13950	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CHQ57_13970	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CHQ57_13975	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CHQ57_13980	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CHQ57_13985	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CHQ57_13990	COG2204	response regulator
CHQ57_13995	COG3852	Histidine kinase
CHQ57_14000	COG2204	response regulator
CHQ57_14015	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
CHQ57_14020	COG0248	Ppx GppA phosphatase
CHQ57_14025	COG2239	Acts as a magnesium transporter
CHQ57_14045	COG1706	bacterial-type flagellum-dependent cell motility
CHQ57_14050	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
CHQ57_14055	COG4786	Flagellar basal body rod
CHQ57_14060	COG4787	bacterial-type flagellum-dependent cell motility
CHQ57_14075	COG1558	bacterial-type flagellum-dependent cell motility
CHQ57_14080	COG1815	bacterial-type flagellum-dependent cell motility
CHQ57_14085	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CHQ57_14090	COG0835	chemotaxis
CHQ57_14090	COG0784	Response regulator, receiver
CHQ57_14110	COG0622	Phosphoesterase
CHQ57_14115	COG4166	transmembrane transport
CHQ57_14125	COG1187	pseudouridine synthase activity
CHQ57_14145	COG0747	negative chemotaxis
CHQ57_14170	COG1278	Cold shock
CHQ57_14210	COG3132	Protein of unknown function, DUF480
CHQ57_14220	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHQ57_14290	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CHQ57_14295	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CHQ57_14310	COG1091	dTDP-4-dehydrorhamnose reductase activity
CHQ57_14345	COG2003	Belongs to the UPF0758 family
CHQ57_14405	COG1538	Outer membrane efflux protein
CHQ57_14415	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_14420	COG1309	transcriptional regulator
CHQ57_14435	COG1946	Acyl-CoA thioesterase
CHQ57_14440	COG3385	transposase activity
CHQ57_14450	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CHQ57_14460	COG0009	L-threonylcarbamoyladenylate synthase
CHQ57_14465	COG0613	PHP domain protein
CHQ57_14470	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CHQ57_14475	COG0512	Glutamine amidotransferase of anthranilate synthase
CHQ57_14475	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CHQ57_14480	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CHQ57_14485	COG0134	indole-3-glycerol-phosphate synthase activity
CHQ57_14485	COG0135	phosphoribosylanthranilate isomerase activity
CHQ57_14490	COG0133	tryptophan synthase activity
CHQ57_14495	COG0159	tryptophan synthase activity
CHQ57_14505	COG0783	Belongs to the Dps family
CHQ57_14545	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_14545	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_14545	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_14555	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_14575	COG0482	sulfurtransferase activity
CHQ57_14580	COG2915	High frequency lysogenization protein hflD homolog
CHQ57_14585	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CHQ57_14590	COG2850	peptidyl-arginine hydroxylation
CHQ57_14595	COG3153	acetyltransferase
CHQ57_14610	COG0259	pyridoxamine-phosphate oxidase activity
CHQ57_14625	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CHQ57_14625	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CHQ57_14630	COG3385	transposase activity
CHQ57_14635	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
CHQ57_14650	COG4235	cytochrome complex assembly
CHQ57_14650	COG3088	subunit of a heme lyase
CHQ57_14660	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CHQ57_14665	COG1138	Cytochrome C-type biogenesis protein
CHQ57_14670	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
CHQ57_14675	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CHQ57_14680	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CHQ57_14685	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CHQ57_14700	COG0835	chemotaxis
CHQ57_14710	COG1192	Involved in chromosome partitioning
CHQ57_14715	COG1360	Flagellar Motor Protein
CHQ57_14720	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CHQ57_14725	COG2201	protein-glutamate methylesterase activity
CHQ57_14730	COG0643	Histidine kinase
CHQ57_14730	COG2198	Histidine kinase
CHQ57_14735	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
CHQ57_14750	COG0455	bacterial-type flagellum organization
CHQ57_14760	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CHQ57_14770	COG1684	flagellar biosynthetic protein fliR
CHQ57_14775	COG1987	bacterial-type flagellum assembly
CHQ57_14825	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CHQ57_14835	COG1677	Flagellar hook-basal body complex protein FliE
CHQ57_14850	COG1342	Belongs to the UPF0251 family
CHQ57_14885	COG3039	Transposase
CHQ57_14905	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CHQ57_14910	COG2862	Uncharacterized protein family, UPF0114
CHQ57_14915	COG1253	flavin adenine dinucleotide binding
CHQ57_14920	COG1968	undecaprenyl-diphosphatase activity
CHQ57_14960	COG3064	Membrane
CHQ57_14960	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
CHQ57_14960	COG1073	alpha beta
CHQ57_14965	COG2994	toxin metabolic process
CHQ57_14975	COG2274	protein secretion by the type I secretion system
CHQ57_14985	COG2274	protein secretion by the type I secretion system
CHQ57_14990	COG0745	RESPONSE REGULATOR receiver
CHQ57_14995	COG3290	protein histidine kinase activity
CHQ57_15000	COG3385	transposase activity
CHQ57_15010	COG1737	Transcriptional regulator
CHQ57_15015	COG0469	pyruvate kinase activity
CHQ57_15045	COG2826	transposase and inactivated derivatives, IS30 family
CHQ57_15050	COG2963	transposase activity
CHQ57_15060	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CHQ57_15070	COG1960	acyl-CoA dehydrogenase activity
CHQ57_15090	COG0538	isocitrate dehydrogenase activity
CHQ57_15095	COG2207	Transcriptional regulator
CHQ57_15110	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CHQ57_15125	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CHQ57_15130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CHQ57_15130	COG1263	PTS System
CHQ57_15135	COG1609	Transcriptional regulator
CHQ57_15155	COG2814	Major facilitator Superfamily
CHQ57_15160	COG0109	protoheme IX farnesyltransferase activity
CHQ57_15170	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CHQ57_15175	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CHQ57_15235	COG0708	Exodeoxyribonuclease III
CHQ57_15270	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_15275	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CHQ57_15285	COG0095	Lipoate-protein ligase
CHQ57_15315	COG0640	Transcriptional regulator
CHQ57_15330	COG1285	pathogenesis
CHQ57_15335	COG1115	amino acid carrier protein
CHQ57_15340	COG0019	diaminopimelate decarboxylase activity
CHQ57_15360	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
CHQ57_15380	COG1131	(ABC) transporter
CHQ57_15385	COG0545	Peptidyl-prolyl cis-trans isomerase
CHQ57_15395	COG3142	Participates in the control of copper homeostasis
CHQ57_15400	COG1940	carbohydrate kinase activity
CHQ57_15410	COG4783	chaperone-mediated protein folding
CHQ57_15420	COG5002	protein histidine kinase activity
CHQ57_15425	COG0745	RESPONSE REGULATOR receiver
CHQ57_15430	COG0346	lactoylglutathione lyase activity
CHQ57_15440	COG3284	Transcriptional regulator
CHQ57_15445	COG1012	belongs to the aldehyde dehydrogenase family
CHQ57_15455	COG0697	spore germination
CHQ57_15465	COG0667	Aldo Keto reductase
CHQ57_15480	COG3290	protein histidine kinase activity
CHQ57_15485	COG0281	malic enzyme
CHQ57_15500	COG1846	Transcriptional regulator
CHQ57_15505	COG1566	PFAM secretion protein HlyD family protein
CHQ57_15530	COG0602	queuosine metabolic process
CHQ57_15540	COG1328	CTP reductase activity
CHQ57_15550	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CHQ57_15555	COG3115	cell septum assembly
CHQ57_15560	COG1196	nuclear chromosome segregation
CHQ57_15570	COG2860	membrane
CHQ57_15580	COG3108	Peptidase M15
CHQ57_15585	COG2989	Protein conserved in bacteria
CHQ57_15600	COG0463	Glycosyl transferase, family 2
CHQ57_15615	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CHQ57_15620	COG0739	heme binding
CHQ57_15640	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
CHQ57_15650	COG3091	SprT-like family
CHQ57_15660	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CHQ57_15665	COG0189	ligase activity
CHQ57_15670	COG3385	transposase activity
CHQ57_15680	COG1678	Uncharacterized ACR, COG1678
CHQ57_15685	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CHQ57_15695	COG0714	Associated with various cellular activities
CHQ57_15710	COG1115	amino acid carrier protein
CHQ57_15715	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CHQ57_15740	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CHQ57_15760	COG2912	Transglutaminase-like superfamily
CHQ57_15770	COG2890	protein-(glutamine-N5) methyltransferase activity
CHQ57_15775	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CHQ57_15780	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
CHQ57_15785	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
CHQ57_15790	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CHQ57_15800	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CHQ57_15805	COG0737	Belongs to the 5'-nucleotidase family
CHQ57_15810	COG0193	aminoacyl-tRNA hydrolase activity
CHQ57_15815	COG0012	GTP binding
CHQ57_15860	COG0490	domain, Protein
CHQ57_15860	COG0471	metal ion transport
CHQ57_15870	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
CHQ57_15890	COG0366	Alpha amylase catalytic
CHQ57_15905	COG0488	(ABC) transporter
CHQ57_15915	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
CHQ57_15915	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
CHQ57_15915	COG0674	pyruvate-flavodoxin oxidoreductase activity
CHQ57_15915	COG1013	pyruvate-flavodoxin oxidoreductase activity
CHQ57_15925	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CHQ57_15935	COG1012	belongs to the aldehyde dehydrogenase family
CHQ57_15945	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CHQ57_15960	COG0180	Tryptophanyl-tRNA synthetase
CHQ57_15965	COG0546	phosphoglycolate phosphatase activity
CHQ57_15970	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CHQ57_15975	COG0338	D12 class N6 adenine-specific DNA methyltransferase
CHQ57_15985	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CHQ57_15990	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
CHQ57_16020	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
CHQ57_16025	COG0583	DNA-binding transcription factor activity
CHQ57_16030	COG0840	transmembrane signaling receptor activity
CHQ57_16045	COG0583	DNA-binding transcription factor activity
CHQ57_16060	COG0739	heme binding
CHQ57_16070	COG1511	domain protein
CHQ57_16070	COG3264	Mechanosensitive ion channel
CHQ57_16075	COG0584	glycerophosphoryl diester phosphodiesterase
CHQ57_16085	COG1053	succinate dehydrogenase
CHQ57_16090	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CHQ57_16095	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
CHQ57_16100	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
CHQ57_16110	COG3214	Protein conserved in bacteria
CHQ57_16145	COG0745	RESPONSE REGULATOR receiver
CHQ57_16150	COG0642	Histidine kinase
CHQ57_16170	COG0516	GMP reductase activity
CHQ57_16180	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CHQ57_16190	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CHQ57_16200	COG3706	GGDEF domain
CHQ57_16210	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CHQ57_16225	COG3706	GGDEF domain
CHQ57_16235	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
CHQ57_16240	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CHQ57_16245	COG1702	phosphate starvation-inducible protein PhoH
CHQ57_16250	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CHQ57_16255	COG4535	Mg2 and Co2 transporter CorC
CHQ57_16260	COG0815	Transfers the fatty acyl group on membrane lipoproteins
CHQ57_16265	COG2888	peptidyl-tyrosine sulfation
CHQ57_16270	COG0495	leucyl-tRNA aminoacylation
CHQ57_16290	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CHQ57_16295	COG0799	negative regulation of ribosome biogenesis
CHQ57_16300	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CHQ57_16305	COG0768	penicillin binding
CHQ57_16310	COG0772	Belongs to the SEDS family
CHQ57_16315	COG2951	lytic endotransglycosylase activity
CHQ57_16320	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
CHQ57_16325	COG1686	Belongs to the peptidase S11 family
CHQ57_16330	COG2921	Belongs to the UPF0250 family
CHQ57_16335	COG0321	lipoyl(octanoyl) transferase activity
CHQ57_16345	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CHQ57_16355	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CHQ57_16360	COG3545	Serine hydrolase
CHQ57_16375	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CHQ57_16380	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CHQ57_16385	COG1970	mechanosensitive ion channel activity
CHQ57_16390	COG4974	Belongs to the 'phage' integrase family
CHQ57_16395	COG0716	FMN binding
CHQ57_16405	COG0312	modulator of DNA gyrase
CHQ57_16450	COG0114	fumarate hydratase activity
CHQ57_16455	COG1422	Protein of unknown function (DUF1090)
CHQ57_16460	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
CHQ57_16465	COG3706	GGDEF domain
CHQ57_16470	COG2211	Major facilitator Superfamily
CHQ57_16475	COG1185	polyribonucleotide nucleotidyltransferase activity
CHQ57_16480	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
CHQ57_16485	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CHQ57_16490	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CHQ57_16495	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CHQ57_16500	COG0195	Participates in both transcription termination and antitermination
CHQ57_16505	COG0779	Required for maturation of 30S ribosomal subunits
CHQ57_16520	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CHQ57_16525	COG0149	triose-phosphate isomerase activity
CHQ57_16530	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CHQ57_16535	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CHQ57_16540	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CHQ57_16545	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
CHQ57_16550	COG1534	Rna-binding protein
CHQ57_16560	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CHQ57_16570	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
CHQ57_16580	COG1360	Flagellar Motor Protein
CHQ57_16585	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CHQ57_16590	COG1722	exodeoxyribonuclease VII activity
CHQ57_16595	COG0142	geranyltranstransferase activity
CHQ57_16600	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CHQ57_16625	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CHQ57_16635	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CHQ57_16640	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
CHQ57_16655	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CHQ57_16655	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CHQ57_16660	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CHQ57_16675	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CHQ57_16690	COG3381	protein complex oligomerization
CHQ57_16720	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CHQ57_16725	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
CHQ57_16730	COG0511	ligase activity, forming carbon-carbon bonds
CHQ57_16735	COG0439	Biotin carboxylase
CHQ57_16740	COG3924	membrane
CHQ57_16745	COG4145	pantothenate transmembrane transporter activity
CHQ57_16750	COG1263	PTS System
CHQ57_16750	COG2190	(PTS) system
CHQ57_16750	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CHQ57_16755	COG0583	DNA-binding transcription factor activity
CHQ57_16760	COG0604	alcohol dehydrogenase
CHQ57_16765	COG2264	protein methyltransferase activity
CHQ57_16770	COG0531	amino acid
CHQ57_16775	COG4303	Ethanolamine ammonia lyase large subunit
CHQ57_16780	COG4302	ethanolamine ammonia-lyase activity
CHQ57_16800	COG0778	Nitroreductase
CHQ57_16805	COG0446	pyridine nucleotide-disulphide oxidoreductase
CHQ57_16805	COG1902	pentaerythritol trinitrate reductase activity
CHQ57_16810	COG0616	signal peptide processing
CHQ57_16830	COG3139	Protein of unknown function (DUF1315)
CHQ57_16835	COG0252	asparaginase activity
CHQ57_16840	COG0786	glutamate:sodium symporter activity
CHQ57_16860	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CHQ57_16865	COG0384	phenazine biosynthesis protein PhzF
CHQ57_16870	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CHQ57_16875	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CHQ57_16880	COG0175	sulfate reduction
CHQ57_16885	COG2113	Glycine betaine
CHQ57_16890	COG4176	ABC-type proline glycine betaine transport system permease component
CHQ57_16895	COG4175	Glycine betaine
CHQ57_16905	COG3610	response to peptide
CHQ57_16910	COG2966	Psort location CytoplasmicMembrane, score
CHQ57_16920	COG0521	Mo-molybdopterin cofactor biosynthetic process
CHQ57_16930	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHQ57_16935	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_16945	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CHQ57_16970	COG2986	histidine ammonia-lyase
CHQ57_16985	COG0318	PFAM AMP-dependent synthetase and ligase
CHQ57_16995	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHQ57_17000	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CHQ57_17035	COG1858	cytochrome C peroxidase
CHQ57_17045	COG2313	pseudouridylate synthase activity
CHQ57_17050	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
CHQ57_17050	COG1522	sequence-specific DNA binding
CHQ57_17055	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CHQ57_17055	COG2146	nitrite reductase [NAD(P)H] activity
CHQ57_17060	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CHQ57_17060	COG2146	nitrite reductase [NAD(P)H] activity
CHQ57_17065	COG1116	anion transmembrane transporter activity
CHQ57_17070	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CHQ57_17075	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CHQ57_17090	COG0243	molybdopterin cofactor binding
CHQ57_17115	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CHQ57_17120	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CHQ57_17135	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
CHQ57_17150	COG2195	Cleaves the N-terminal amino acid of tripeptides
CHQ57_17160	COG4608	Belongs to the ABC transporter superfamily
CHQ57_17165	COG0444	Belongs to the ABC transporter superfamily
CHQ57_17170	COG0747	negative chemotaxis
CHQ57_17175	COG4239	(ABC) transporter, permease
CHQ57_17180	COG4174	ABC transporter (Permease)
CHQ57_17185	COG4206	TonB-dependent receptor
CHQ57_17195	COG0811	peptide transport
CHQ57_17200	COG0811	peptide transport
CHQ57_17205	COG0848	biopolymer transport protein
CHQ57_17255	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHQ57_17260	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CHQ57_17265	COG0840	transmembrane signaling receptor activity
CHQ57_17275	COG1278	Cold shock
CHQ57_17315	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
CHQ57_17320	COG1162	GTPase activity
CHQ57_17325	COG0688	phosphatidylethanolamine metabolic process
CHQ57_17330	COG4628	conserved protein (DUF2132)
CHQ57_17350	COG5001	Diguanylate cyclase
CHQ57_17350	COG3300	MHYT domain
CHQ57_17355	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
CHQ57_17360	COG3291	Pkd domain containing protein
CHQ57_17360	COG4412	M6 family metalloprotease domain protein
CHQ57_17385	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
CHQ57_17390	COG1012	belongs to the aldehyde dehydrogenase family
CHQ57_17395	COG1309	transcriptional regulator
CHQ57_17405	COG1132	(ABC) transporter
CHQ57_17415	COG2897	thiosulfate sulfurtransferase activity
CHQ57_17420	COG2066	Belongs to the glutaminase family
CHQ57_17425	COG3171	Protein conserved in bacteria
CHQ57_17430	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CHQ57_17435	COG2234	aminopeptidase activity
CHQ57_17435	COG4935	Belongs to the peptidase S8 family
CHQ57_17440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CHQ57_17445	COG2200	EAL domain
CHQ57_17450	COG1090	epimerase
CHQ57_17455	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
CHQ57_17460	COG4181	ATPase activity
CHQ57_17465	COG2755	lipolytic protein G-D-S-L family
CHQ57_17470	COG0784	Response regulator, receiver
CHQ57_17470	COG0835	chemotaxis
CHQ57_17500	COG0569	domain protein
CHQ57_17500	COG2985	domain, Protein
CHQ57_17505	COG1272	protein, Hemolysin III
CHQ57_17510	COG0076	glutamate decarboxylase activity
CHQ57_17515	COG2917	probably involved in intracellular septation
CHQ57_17520	COG2350	Protein conserved in bacteria
CHQ57_17530	COG1555	photosystem II stabilization
CHQ57_17535	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CHQ57_17540	COG3104	oligopeptide transport
CHQ57_17545	COG0745	RESPONSE REGULATOR receiver
CHQ57_17555	COG5000	phosphorelay sensor kinase activity
CHQ57_17560	COG0471	metal ion transport
CHQ57_17590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_17605	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
CHQ57_17635	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CHQ57_17645	COG1401	restriction endodeoxyribonuclease activity
CHQ57_17650	COG0732	type I restriction modification DNA specificity domain
CHQ57_17655	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CHQ57_17705	COG2003	Belongs to the UPF0758 family
CHQ57_17755	COG5377	YqaJ viral recombinase family
CHQ57_17775	COG4983	Phage plasmid primase, P4 family domain protein
CHQ57_17830	COG0789	Transcriptional regulator
CHQ57_17835	COG2916	Histone family protein nucleoid-structuring protein H-NS
CHQ57_17855	COG1280	lysine exporter protein (LysE YggA)
CHQ57_17880	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CHQ57_17885	COG0564	pseudouridine synthase activity
CHQ57_17895	COG3300	MHYT domain
CHQ57_17895	COG5001	Diguanylate cyclase
CHQ57_17905	COG0459	protein refolding
CHQ57_17910	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CHQ57_17920	COG3030	protein affecting phage T7 exclusion by the F plasmid
CHQ57_17925	COG1027	Aspartate ammonia-lyase
CHQ57_17930	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
CHQ57_17950	COG3227	Zinc metalloprotease (Elastase)
CHQ57_17955	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CHQ57_17960	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CHQ57_17980	COG0673	inositol 2-dehydrogenase activity
CHQ57_17990	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
CHQ57_17995	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CHQ57_18000	COG3036	rescue of stalled ribosome
CHQ57_18005	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CHQ57_18015	COG0138	bifunctional purine biosynthesis protein purh
CHQ57_18020	COG0151	Belongs to the GarS family
CHQ57_18045	COG0582	viral genome integration into host DNA
CHQ57_18095	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CHQ57_18100	COG0358	DNA primase activity
CHQ57_18105	COG1610	YqeY-like protein
CHQ57_18110	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CHQ57_18115	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CHQ57_18130	COG4942	peptidase
CHQ57_18130	COG1388	LysM domain
CHQ57_18135	COG1238	metal cluster binding
CHQ57_18140	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
CHQ57_18145	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
CHQ57_18150	COG0585	pseudouridine synthase activity
CHQ57_18160	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CHQ57_18165	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
CHQ57_18170	COG0148	phosphopyruvate hydratase activity
CHQ57_18175	COG0504	CTP synthase activity
CHQ57_18180	COG3956	TIGRFAM MazG family protein
CHQ57_18185	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CHQ57_18190	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CHQ57_18200	COG4807	Protein conserved in bacteria
CHQ57_18205	COG3023	N-Acetylmuramoyl-L-alanine amidase
CHQ57_18210	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
CHQ57_18215	COG1381	Involved in DNA repair and RecF pathway recombination
CHQ57_18225	COG0571	ribonuclease III activity
CHQ57_18230	COG0681	Belongs to the peptidase S26 family
CHQ57_18235	COG0481	GTPase activity
CHQ57_18250	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
CHQ57_18255	COG1595	DNA-templated transcription, initiation
CHQ57_18260	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CHQ57_18280	COG0583	DNA-binding transcription factor activity
CHQ57_18315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CHQ57_18320	COG0191	fructose-bisphosphate aldolase activity
CHQ57_18325	COG0126	phosphoglycerate kinase activity
CHQ57_18330	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CHQ57_18335	COG1940	carbohydrate kinase activity
CHQ57_18350	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
CHQ57_18385	COG0840	transmembrane signaling receptor activity
CHQ57_18410	COG0529	Catalyzes the synthesis of activated sulfate
CHQ57_18415	COG3273	potassium ion transport
CHQ57_18415	COG0471	metal ion transport
CHQ57_18420	COG2895	sulfate adenylyltransferase (ATP) activity
CHQ57_18425	COG0175	sulfate reduction
CHQ57_18430	COG1648	precorrin-2 dehydrogenase activity
CHQ57_18430	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CHQ57_18435	COG0330	HflC and HflK could
CHQ57_18440	COG1585	Membrane protein implicated in regulation of membrane protease activity
CHQ57_18445	COG0517	IMP dehydrogenase activity
CHQ57_18445	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CHQ57_18450	COG0488	(ABC) transporter
CHQ57_18460	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
CHQ57_18500	COG0789	Transcriptional regulator
CHQ57_18510	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CHQ57_18515	COG1376	ErfK ybiS ycfS ynhG family protein
CHQ57_18520	COG0668	transmembrane transport
CHQ57_18530	COG2731	YhcH YjgK YiaL family protein
CHQ57_18540	COG1794	racemase activity, acting on amino acids and derivatives
CHQ57_18555	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CHQ57_18580	COG0733	neurotransmitter:sodium symporter activity
CHQ57_18590	COG0733	neurotransmitter:sodium symporter activity
CHQ57_18605	COG0561	phosphatase activity
CHQ57_18635	COG1846	Transcriptional regulator
CHQ57_18640	COG1764	response to oxidative stress
CHQ57_18645	COG2130	NADP-dependent
CHQ57_18665	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
CHQ57_18670	COG1349	DNA-binding transcription factor activity
CHQ57_18680	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_18695	COG3730	PTS system glucitol sorbitol-specific
CHQ57_18705	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_18715	COG2982	Protein involved in outer membrane biogenesis
CHQ57_18720	COG1505	serine-type exopeptidase activity
CHQ57_18725	COG0577	efflux transmembrane transporter activity
CHQ57_18725	COG1136	(ABC) transporter
CHQ57_18730	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
CHQ57_18735	COG0745	RESPONSE REGULATOR receiver
CHQ57_18740	COG2205	protein histidine kinase activity
CHQ57_18800	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
CHQ57_18820	COG0513	Belongs to the DEAD box helicase family
CHQ57_18845	COG0154	amidase activity
CHQ57_18850	COG2957	Belongs to the agmatine deiminase family
CHQ57_18860	COG4221	oxidoreductase activity
CHQ57_18875	COG1024	Enoyl-CoA hydratase
CHQ57_18885	COG0110	maltose O-acetyltransferase activity
CHQ57_18895	COG4166	transmembrane transport
CHQ57_18910	COG1872	DUF167
CHQ57_18915	COG0762	integral membrane protein
CHQ57_18920	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CHQ57_18925	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CHQ57_18940	COG3022	response to hydroperoxide
CHQ57_18945	COG0513	Belongs to the DEAD box helicase family
CHQ57_18950	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CHQ57_18970	COG0735	belongs to the Fur family
CHQ57_18975	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CHQ57_18990	COG0776	regulation of translation
CHQ57_18995	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
CHQ57_19020	COG0560	Phosphoserine phosphatase
CHQ57_19030	COG0813	purine-nucleoside phosphorylase activity
CHQ57_19035	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
CHQ57_19040	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
CHQ57_19045	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CHQ57_19055	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
CHQ57_19060	COG0084	hydrolase, TatD family'
CHQ57_19080	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CHQ57_19085	COG0004	ammonium transporteR
CHQ57_19100	COG0795	lipopolysaccharide-transporting ATPase activity
CHQ57_19105	COG0795	lipopolysaccharide-transporting ATPase activity
CHQ57_19110	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
CHQ57_19115	COG2927	DNA polymerase III (CHI subunit)
CHQ57_19125	COG1253	flavin adenine dinucleotide binding
CHQ57_19130	COG0586	Pfam SNARE associated Golgi protein
CHQ57_19135	COG1686	Belongs to the peptidase S11 family
CHQ57_19170	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
CHQ57_19175	COG0527	aspartate kinase activity
CHQ57_19180	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CHQ57_19190	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CHQ57_19195	COG1546	Belongs to the CinA family
CHQ57_19200	COG0659	secondary active sulfate transmembrane transporter activity
CHQ57_19205	COG0589	response to stress
CHQ57_19210	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CHQ57_19240	COG0583	DNA-binding transcription factor activity
CHQ57_19245	COG1380	Effector of murein hydrolase LrgA
CHQ57_19250	COG1346	cytolysis
CHQ57_19265	COG0460	homoserine dehydrogenase
CHQ57_19265	COG0527	aspartate kinase activity
CHQ57_19270	COG0626	cystathionine gamma-synthase activity
CHQ57_19280	COG2207	Transcriptional regulator
CHQ57_19280	COG3708	Transcriptional regulator
CHQ57_19285	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CHQ57_19290	COG0814	amino acid
CHQ57_19295	COG1218	3'(2'),5'-bisphosphate nucleotidase
CHQ57_19300	COG0494	nUDIX hydrolase
CHQ57_19305	COG1011	Hydrolase
CHQ57_19310	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CHQ57_19325	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
CHQ57_19335	COG3156	type II secretion system protein K
CHQ57_19340	COG4795	General secretion pathway protein
CHQ57_19345	COG2165	general secretion pathway protein
CHQ57_19355	COG2165	general secretion pathway protein
CHQ57_19360	COG1459	type II secretion system
CHQ57_19365	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CHQ57_19370	COG1450	Type ii and iii secretion system protein
CHQ57_19385	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CHQ57_19390	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CHQ57_19410	COG0456	acetyltransferase
CHQ57_19415	COG3133	Outer membrane lipoprotein
CHQ57_19435	COG2771	luxR family
CHQ57_19450	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
CHQ57_19465	COG2213	PTS system mannitol-specific
CHQ57_19465	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_19470	COG0246	Mannitol dehydrogenase
CHQ57_19475	COG3722	fumarate hydratase activity
CHQ57_19480	COG3263	regulation of cellular component size
CHQ57_19485	COG0484	heat shock protein binding
CHQ57_19505	COG1671	Belongs to the UPF0178 family
CHQ57_19520	COG1988	membrane-bound metal-dependent
CHQ57_19525	COG0513	Belongs to the DEAD box helicase family
CHQ57_19550	COG1575	Belongs to the MenA family. Type 1 subfamily
CHQ57_19555	COG1169	isochorismate synthase
CHQ57_19560	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
CHQ57_19565	COG0596	Alpha beta hydrolase
CHQ57_19570	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CHQ57_19580	COG0318	PFAM AMP-dependent synthetase and ligase
CHQ57_19605	COG3539	Fimbrial protein
CHQ57_19610	COG3121	Chaperone
CHQ57_19615	COG3188	usher protein
CHQ57_19625	COG3539	Fimbrial protein
CHQ57_19635	COG3291	Pkd domain containing protein
CHQ57_19640	COG2949	membrane
CHQ57_19655	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
CHQ57_19665	COG5380	lipid catabolic process
CHQ57_19680	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
CHQ57_19695	COG2873	o-acetylhomoserine
CHQ57_19705	COG1979	alcohol dehydrogenase
CHQ57_19725	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
CHQ57_19725	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
CHQ57_19730	COG1560	Kdo2-lipid A biosynthetic process
CHQ57_19750	COG1392	Phosphate transport regulator
CHQ57_19755	COG0306	phosphate transporter
CHQ57_19760	COG0617	tRNA 3'-terminal CCA addition
CHQ57_19765	COG3267	Type II secretory pathway component ExeA
CHQ57_19765	COG3409	Peptidoglycan-binding domain 1 protein
CHQ57_19775	COG1194	a g-specific adenine glycosylase
CHQ57_19780	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
CHQ57_19790	COG3111	PFAM Bacterial OB fold (BOF) protein
CHQ57_19795	COG3240	lipase activity
CHQ57_19810	COG3009	Protein conserved in bacteria
CHQ57_19815	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CHQ57_19815	COG3008	intermembrane lipid transfer
CHQ57_19820	COG2995	paraquat-inducible protein a
CHQ57_19830	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CHQ57_19840	COG3706	GGDEF domain
CHQ57_19840	COG5001	Diguanylate cyclase
CHQ57_19840	COG2203	Gaf domain
CHQ57_19840	COG4251	negative regulation of phosphorylation
CHQ57_19845	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
CHQ57_19850	COG2813	Specifically methylates the guanine in position
CHQ57_19855	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CHQ57_19860	COG0297	glycogen (starch) synthase activity
CHQ57_19895	COG1757	Na H antiporter
CHQ57_19915	COG0110	maltose O-acetyltransferase activity
CHQ57_19920	COG0366	Alpha amylase catalytic
CHQ57_19925	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CHQ57_19925	COG1263	PTS System
CHQ57_19930	COG1609	Transcriptional regulator
CHQ57_19940	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CHQ57_19945	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CHQ57_19950	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CHQ57_19950	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CHQ57_19955	COG2723	6-phospho-beta-galactosidase activity
CHQ57_19960	COG1447	Phosphotransferase system cellobiose-specific component IIA
CHQ57_19965	COG1940	carbohydrate kinase activity
CHQ57_19975	COG1609	Transcriptional regulator
CHQ57_19985	COG0252	asparaginase activity
CHQ57_20000	COG1803	Methylglyoxal synthase
CHQ57_20025	COG1444	tRNA N-acetyltransferase activity
CHQ57_20030	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_20035	COG0784	Response regulator, receiver
CHQ57_20035	COG0835	chemotaxis
CHQ57_20075	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CHQ57_20080	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CHQ57_20095	COG0477	Major facilitator Superfamily
CHQ57_20100	COG0523	cobalamin synthesis protein
CHQ57_20110	COG2200	EAL domain
CHQ57_20115	COG1049	propionate catabolic process, 2-methylcitrate cycle
CHQ57_20125	COG0840	transmembrane signaling receptor activity
CHQ57_20130	COG0840	transmembrane signaling receptor activity
CHQ57_20140	COG3447	MASE1 domain protein
CHQ57_20140	COG5001	Diguanylate cyclase
CHQ57_20140	COG5002	protein histidine kinase activity
CHQ57_20145	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CHQ57_20150	COG0508	dehydrogenase complex catalyzes the overall conversion of
CHQ57_20155	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
CHQ57_20160	COG2186	Transcriptional regulator
CHQ57_20185	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CHQ57_20190	COG1459	type II secretion system
CHQ57_20195	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CHQ57_20205	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
CHQ57_20210	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
CHQ57_20215	COG0494	nUDIX hydrolase
CHQ57_20220	COG0653	protein targeting
CHQ57_20230	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
CHQ57_20235	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CHQ57_20240	COG0849	cell division
CHQ57_20245	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CHQ57_20250	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CHQ57_20255	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CHQ57_20260	COG0772	Belongs to the SEDS family
CHQ57_20265	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CHQ57_20270	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CHQ57_20275	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CHQ57_20285	COG0768	penicillin binding
CHQ57_20290	COG3116	cell division
CHQ57_20295	COG0275	rRNA processing
CHQ57_20300	COG2001	Belongs to the MraZ family
CHQ57_20310	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CHQ57_20315	COG3107	peptidoglycan biosynthetic process
CHQ57_20320	COG0792	nuclease activity
CHQ57_20325	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
CHQ57_20330	COG2823	Periplasmic or secreted lipoprotein
CHQ57_20335	COG2969	positive regulation of protein catabolic process
CHQ57_20340	COG0625	glutathione transferase activity
CHQ57_20345	COG2857	Cytochrome c1
CHQ57_20350	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CHQ57_20355	COG0723	plastoquinol--plastocyanin reductase activity
CHQ57_20360	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CHQ57_20365	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CHQ57_20370	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
CHQ57_20380	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CHQ57_20385	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CHQ57_20420	COG3964	amidohydrolase
CHQ57_20440	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_20445	COG1660	Displays ATPase and GTPase activities
CHQ57_20450	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CHQ57_20460	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CHQ57_20465	COG1137	ATPase activity
CHQ57_20470	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
CHQ57_20475	COG3117	lipopolysaccharide transmembrane transporter activity
CHQ57_20480	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
CHQ57_20485	COG0517	IMP dehydrogenase activity
CHQ57_20485	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
CHQ57_20490	COG1127	ABC transporter
CHQ57_20495	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
CHQ57_20500	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
CHQ57_20505	COG2854	intermembrane phospholipid transfer
CHQ57_20515	COG5007	Belongs to the BolA IbaG family
CHQ57_20520	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CHQ57_20525	COG0312	modulator of DNA gyrase
CHQ57_20530	COG3028	Belongs to the UPF0307 family
CHQ57_20540	COG2926	Belongs to the UPF0265 family
CHQ57_20555	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CHQ57_20560	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
CHQ57_20570	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CHQ57_20580	COG2095	MarC family integral membrane protein
CHQ57_20590	COG1301	dicarboxylic acid transport
CHQ57_20615	COG3714	YhhN family
CHQ57_20635	COG1770	oligopeptidase
CHQ57_20650	COG2249	NAD(P)H dehydrogenase (quinone) activity
CHQ57_20685	COG3547	Transposase (IS116 IS110 IS902 family)
CHQ57_20725	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
CHQ57_20730	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CHQ57_20735	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CHQ57_20740	COG0049	tRNA binding
CHQ57_20745	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CHQ57_20750	COG2168	tRNA wobble position uridine thiolation
CHQ57_20755	COG2923	Belongs to the DsrF TusC family
CHQ57_20770	COG2964	Protein conserved in bacteria
CHQ57_20775	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CHQ57_20780	COG0085	RNA polymerase activity
CHQ57_20785	COG0222	ribosome binding
CHQ57_20790	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CHQ57_20795	COG0081	regulation of translation
CHQ57_20800	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
CHQ57_20805	COG0250	Participates in transcription elongation, termination and antitermination
CHQ57_20810	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CHQ57_20820	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CHQ57_20845	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CHQ57_20850	COG0569	domain protein
CHQ57_20855	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CHQ57_20860	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CHQ57_20865	COG3005	denitrification pathway
CHQ57_20870	COG0243	molybdopterin cofactor binding
CHQ57_20880	COG2205	protein histidine kinase activity
CHQ57_20885	COG0745	RESPONSE REGULATOR receiver
CHQ57_20900	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
CHQ57_20905	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CHQ57_20920	COG2204	response regulator
CHQ57_20930	COG2205	protein histidine kinase activity
CHQ57_20940	COG1028	Short-chain dehydrogenase reductase Sdr
CHQ57_20945	COG0517	IMP dehydrogenase activity
CHQ57_20945	COG0516	GMP reductase activity
CHQ57_20950	COG5413	integral membrane protein
CHQ57_20960	COG1522	sequence-specific DNA binding
CHQ57_20965	COG2502	aspartate--ammonia ligase
CHQ57_20970	COG0542	response to heat
CHQ57_20980	COG0564	pseudouridine synthase activity
CHQ57_20985	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
CHQ57_20995	COG0446	pyridine nucleotide-disulphide oxidoreductase
CHQ57_21005	COG3681	Belongs to the UPF0597 family
CHQ57_21010	COG2964	Protein conserved in bacteria
CHQ57_21020	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CHQ57_21025	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CHQ57_21030	COG1979	alcohol dehydrogenase
CHQ57_21035	COG2207	Transcriptional regulator
CHQ57_21040	COG3040	lipid binding
CHQ57_21065	COG1288	antiporter activity
CHQ57_21070	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CHQ57_21100	COG4211	Belongs to the binding-protein-dependent transport system permease family
CHQ57_21115	COG3250	beta-galactosidase activity
CHQ57_21120	COG1609	Transcriptional regulator
CHQ57_21125	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CHQ57_21135	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
CHQ57_21140	COG2017	converts alpha-aldose to the beta-anomer
CHQ57_21145	COG0667	Aldo Keto reductase
CHQ57_21150	COG1968	undecaprenyl-diphosphatase activity
CHQ57_21160	COG1595	DNA-templated transcription, initiation
CHQ57_21170	COG0018	arginyl-trna synthetase
CHQ57_21185	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CHQ57_21190	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CHQ57_21205	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CHQ57_21210	COG2146	nitrite reductase [NAD(P)H] activity
CHQ57_21215	COG2116	formate transmembrane transporter activity
CHQ57_21220	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
CHQ57_21220	COG1648	precorrin-2 dehydrogenase activity
CHQ57_21225	COG2239	Acts as a magnesium transporter
CHQ57_21235	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CHQ57_21240	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
CHQ57_21250	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
CHQ57_21280	COG0540	Belongs to the ATCase OTCase family
CHQ57_21285	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
CHQ57_21300	COG0514	ATP-dependent DNA helicase (RecQ)
CHQ57_21305	COG2050	protein possibly involved in aromatic compounds catabolism
CHQ57_21320	COG2258	MOSC domain
CHQ57_21325	COG1177	transmembrane transport
CHQ57_21330	COG1176	ABC-type spermidine putrescine transport system, permease component I
CHQ57_21335	COG3842	ATPase activity
CHQ57_21355	COG0174	glutamine synthetase
CHQ57_21365	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CHQ57_21375	COG3045	CreA protein
CHQ57_21380	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CHQ57_21385	COG0443	Heat shock 70 kDa protein
CHQ57_21395	COG1639	'signal transduction protein
CHQ57_21400	COG0366	Alpha amylase catalytic
CHQ57_21415	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CHQ57_21420	COG0745	RESPONSE REGULATOR receiver
CHQ57_21425	COG2205	protein histidine kinase activity
CHQ57_21435	COG0281	malic enzyme
CHQ57_21440	COG0702	epimerase
CHQ57_21445	COG0254	rRNA binding
CHQ57_21450	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CHQ57_21460	COG1309	transcriptional regulator
CHQ57_21480	COG0129	dihydroxy-acid dehydratase activity
CHQ57_21485	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CHQ57_21490	COG3978	acetolactate synthase activity
CHQ57_21500	COG0606	chelatase, subunit chli
CHQ57_21505	COG0204	Acyl-transferase
CHQ57_21530	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
CHQ57_21535	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
CHQ57_21540	COG3639	organic phosphonate transmembrane transporter activity
CHQ57_21545	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
CHQ57_21550	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CHQ57_21560	COG3084	Protein conserved in bacteria
CHQ57_21565	COG4251	negative regulation of phosphorylation
CHQ57_21565	COG2203	Gaf domain
CHQ57_21565	COG3706	GGDEF domain
CHQ57_21565	COG5001	Diguanylate cyclase
CHQ57_21580	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CHQ57_21585	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
CHQ57_21590	COG1561	YicC-like family, N-terminal region
CHQ57_21620	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
CHQ57_21635	COG1063	alcohol dehydrogenase
CHQ57_21650	COG0210	DNA helicase
CHQ57_21655	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CHQ57_21660	COG2166	iron-sulfur cluster assembly
CHQ57_21665	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CHQ57_21700	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
CHQ57_21705	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CHQ57_21710	COG1739	Uncharacterized protein family UPF0029
CHQ57_21715	COG0006	proline dipeptidase activity
CHQ57_21720	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CHQ57_21725	COG1250	3-hydroxyacyl-CoA dehydrogenase
CHQ57_21725	COG1024	Enoyl-CoA hydratase
CHQ57_21730	COG0183	Belongs to the thiolase family
CHQ57_21735	COG0745	RESPONSE REGULATOR receiver
CHQ57_21740	COG2205	protein histidine kinase activity
CHQ57_21765	COG0425	Belongs to the sulfur carrier protein TusA family
CHQ57_21770	COG0251	oxidation-reduction process
CHQ57_21780	COG2885	chlorophyll binding
CHQ57_21785	COG2818	Glycosylase
CHQ57_21790	COG0752	glycyl-tRNA synthetase alpha subunit
CHQ57_21795	COG0751	glycine-tRNA ligase activity
CHQ57_21810	COG0529	Catalyzes the synthesis of activated sulfate
CHQ57_21820	COG2202	Pas domain
CHQ57_21820	COG2200	EAL domain
CHQ57_21820	COG2199	diguanylate cyclase activity
CHQ57_21835	COG0640	Transcriptional regulator
CHQ57_21845	COG0814	amino acid
CHQ57_21850	COG0348	domain, Protein
CHQ57_21860	COG0446	pyridine nucleotide-disulphide oxidoreductase
CHQ57_21865	COG1773	rubredoxin
CHQ57_21865	COG0426	domain, Protein
CHQ57_21870	COG3604	Transcriptional regulator
CHQ57_21875	COG2188	Transcriptional regulator
CHQ57_21890	COG1609	Transcriptional regulator
CHQ57_21900	COG0559	Belongs to the binding-protein-dependent transport system permease family
CHQ57_21930	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CHQ57_21955	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
CHQ57_21965	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CHQ57_21970	COG3118	belongs to the thioredoxin family
CHQ57_21975	COG0513	Belongs to the DEAD box helicase family
CHQ57_21980	COG0248	Ppx GppA phosphatase
CHQ57_21990	COG0742	ribosomal rna small subunit methyltransferase
CHQ57_22010	COG0084	hydrolase, TatD family'
CHQ57_22015	COG0805	protein transport
CHQ57_22020	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CHQ57_22030	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CHQ57_22035	COG3165	ubiquinone biosynthetic process from chorismate
CHQ57_22045	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
CHQ57_22050	COG0402	S-adenosylhomocysteine deaminase activity
CHQ57_22090	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
CHQ57_22095	COG0848	biopolymer transport protein
CHQ57_22100	COG0811	peptide transport
CHQ57_22105	COG0811	peptide transport
CHQ57_22115	COG2771	luxR family
CHQ57_22120	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CHQ57_22125	COG1349	DNA-binding transcription factor activity
CHQ57_22130	COG0745	RESPONSE REGULATOR receiver
CHQ57_22145	COG4452	Inner membrane protein CreD
CHQ57_22150	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CHQ57_22155	COG0355	proton-transporting ATP synthase activity, rotational mechanism
CHQ57_22160	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CHQ57_22165	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CHQ57_22170	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CHQ57_22175	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CHQ57_22180	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
CHQ57_22190	COG0356	it plays a direct role in the translocation of protons across the membrane
CHQ57_22195	COG3312	ion transport
CHQ57_22200	COG1475	DNA binding
CHQ57_22205	COG1192	Involved in chromosome partitioning
CHQ57_22210	COG0357	Ribosomal RNA small subunit methyltransferase G
CHQ57_22215	COG0445	tRNA wobble uridine modification
CHQ57_22220	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CHQ57_22225	COG4774	siderophore transport
CHQ57_22230	COG4615	Cyclic peptide transporter
CHQ57_22235	COG1120	ATPase activity
CHQ57_22240	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CHQ57_22250	COG4774	siderophore transport
CHQ57_22255	COG4607	ABC-type enterochelin transport system periplasmic component
CHQ57_22260	COG4604	ABC transporter, ATP-binding protein
CHQ57_22265	COG4605	iron ion homeostasis
CHQ57_22270	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CHQ57_22290	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CHQ57_22300	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
CHQ57_22315	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CHQ57_22320	COG0706	membrane insertase activity
CHQ57_22325	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CHQ57_22330	COG0594	ribonuclease P activity
CHQ57_22335	COG0230	Belongs to the bacterial ribosomal protein bL34 family