locus-tag class description LJF99_00065 PF06892 Phage regulatory protein CII (CP76) LJF99_00080 PF00717 Peptidase S24-like LJF99_00090 PF02899 Phage integrase, N-terminal SAM-like domain LJF99_00090 PF00589 Phage integrase family LJF99_00100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_00100 PF03466 LysR substrate binding domain LJF99_00120 PF00149 Calcineurin-like phosphoesterase LJF99_00130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LJF99_00135 PF01406 tRNA synthetases class I (C) catalytic domain LJF99_00135 PF09190 DALR domain LJF99_00140 PF13592 Winged helix-turn helix LJF99_00140 PF13358 DDE superfamily endonuclease LJF99_00190 PF01169 Uncharacterized protein family UPF0016 LJF99_00195 PF01253 Translation initiation factor SUI1 LJF99_00205 PF07664 Ferrous iron transport protein B C terminus LJF99_00205 PF02421 Ferrous iron transport protein B LJF99_00205 PF07670 Nucleoside recognition LJF99_00220 PF00483 Nucleotidyl transferase LJF99_00225 PF00437 Type II/IV secretion system protein LJF99_00235 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_00235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_00235 PF00072 Response regulator receiver domain LJF99_00235 PF00989 PAS fold LJF99_00235 PF01627 Hpt domain LJF99_00235 PF00512 His Kinase A (phospho-acceptor) domain LJF99_00240 PF01032 FecCD transport family LJF99_00245 PF00005 ABC transporter LJF99_00250 PF00793 DAHP synthetase I family LJF99_00255 PF01219 Prokaryotic diacylglycerol kinase LJF99_00260 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_00260 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJF99_00260 PF01842 ACT domain LJF99_00265 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LJF99_00270 PF01812 5-formyltetrahydrofolate cyclo-ligase family LJF99_00290 PF01113 Dihydrodipicolinate reductase, N-terminus LJF99_00290 PF05173 Dihydrodipicolinate reductase, C-terminus LJF99_00295 PF00117 Glutamine amidotransferase class-I LJF99_00295 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LJF99_00300 PF02142 MGS-like domain LJF99_00300 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LJF99_00300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJF99_00305 PF08502 LeuA allosteric (dimerisation) domain LJF99_00305 PF00682 HMGL-like LJF99_00310 PF07759 Protein of unknown function (DUF1615) LJF99_00320 PF13592 Winged helix-turn helix LJF99_00320 PF13358 DDE superfamily endonuclease LJF99_00330 PF08378 Nuclease-related domain LJF99_00345 PF13302 Acetyltransferase (GNAT) domain LJF99_00350 PF00271 Helicase conserved C-terminal domain LJF99_00350 PF00270 DEAD/DEAH box helicase LJF99_00375 PF09278 MerR, DNA binding LJF99_00375 PF00376 MerR family regulatory protein LJF99_00390 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_00390 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LJF99_00395 PF00310 Glutamine amidotransferases class-II LJF99_00395 PF01645 Conserved region in glutamate synthase LJF99_00395 PF01493 GXGXG motif LJF99_00395 PF04898 Glutamate synthase central domain LJF99_00400 PF04055 Radical SAM superfamily LJF99_00400 PF16199 Radical_SAM C-terminal domain LJF99_00405 PF00005 ABC transporter LJF99_00405 PF03412 Peptidase C39 family LJF99_00405 PF00664 ABC transporter transmembrane region LJF99_00485 PF12241 Trans-2-enoyl-CoA reductase catalytic region LJF99_00485 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LJF99_00485 PF07055 Enoyl reductase FAD binding domain LJF99_00490 PF03606 C4-dicarboxylate anaerobic carrier LJF99_00495 PF00155 Aminotransferase class I and II LJF99_00505 PF00462 Glutaredoxin LJF99_00510 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LJF99_00515 PF04851 Type III restriction enzyme, res subunit LJF99_00515 PF00271 Helicase conserved C-terminal domain LJF99_00520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_00520 PF00529 HlyD membrane-fusion protein of T1SS LJF99_00525 PF11742 Protein of unknown function (DUF3302) LJF99_00530 PF02554 Carbon starvation protein CstA LJF99_00535 PF04397 LytTr DNA-binding domain LJF99_00535 PF00072 Response regulator receiver domain LJF99_00540 PF07694 5TMR of 5TMR-LYT LJF99_00540 PF06580 Histidine kinase LJF99_00545 PF11871 Domain of unknown function (DUF3391) LJF99_00545 PF01966 HD domain LJF99_00550 PF00171 Aldehyde dehydrogenase family LJF99_00550 PF00465 Iron-containing alcohol dehydrogenase LJF99_00560 PF01914 MarC family integral membrane protein LJF99_00565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_00570 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_00575 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_00575 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_00580 PF00005 ABC transporter LJF99_00580 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_00590 PF00005 ABC transporter LJF99_00590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_00595 PF03741 Integral membrane protein TerC family LJF99_00600 PF01168 Alanine racemase, N-terminal domain LJF99_00600 PF00842 Alanine racemase, C-terminal domain LJF99_00610 PF00375 Sodium:dicarboxylate symporter family LJF99_00625 PF01979 Amidohydrolase family LJF99_00635 PF00672 HAMP domain LJF99_00635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_00640 PF01230 HIT domain LJF99_00675 PF07549 SecD/SecF GG Motif LJF99_00675 PF02355 Protein export membrane protein LJF99_00675 PF13721 SecD export protein N-terminal TM region LJF99_00680 PF02355 Protein export membrane protein LJF99_00680 PF07549 SecD/SecF GG Motif LJF99_00685 PF08447 PAS fold LJF99_00685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_00685 PF13426 PAS domain LJF99_00700 PF00361 Proton-conducting membrane transporter LJF99_00705 PF00361 Proton-conducting membrane transporter LJF99_00710 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LJF99_00710 PF00361 Proton-conducting membrane transporter LJF99_00715 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LJF99_00720 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LJF99_00725 PF12838 4Fe-4S dicluster domain LJF99_00730 PF00146 NADH dehydrogenase LJF99_00735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJF99_00735 PF00384 Molybdopterin oxidoreductase LJF99_00735 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LJF99_00740 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LJF99_00740 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LJF99_00750 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LJF99_00750 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LJF99_00755 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LJF99_00760 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LJF99_00765 PF00691 OmpA family LJF99_00765 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJF99_00770 PF01618 MotA/TolQ/ExbB proton channel family LJF99_00785 PF04536 TPM domain LJF99_00795 PF03411 Penicillin-insensitive murein endopeptidase LJF99_00800 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_00805 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_00810 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_00815 PF00005 ABC transporter LJF99_00825 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LJF99_00830 PF00248 Aldo/keto reductase family LJF99_00840 PF00106 short chain dehydrogenase LJF99_00845 PF01212 Beta-eliminating lyase LJF99_00855 PF00072 Response regulator receiver domain LJF99_00860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_00860 PF03466 LysR substrate binding domain LJF99_00870 PF13358 DDE superfamily endonuclease LJF99_00870 PF13592 Winged helix-turn helix LJF99_00875 PF03707 Bacterial signalling protein N terminal repeat LJF99_00875 PF00990 Diguanylate cyclase, GGDEF domain LJF99_00875 PF00563 EAL domain LJF99_00880 PF00881 Nitroreductase family LJF99_00895 PF07690 Major Facilitator Superfamily LJF99_00900 PF03466 LysR substrate binding domain LJF99_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_00905 PF03466 LysR substrate binding domain LJF99_00905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_00910 PF00925 GTP cyclohydrolase II LJF99_00915 PF02224 Cytidylate kinase LJF99_00920 PF00575 S1 RNA binding domain LJF99_00925 PF00216 Bacterial DNA-binding protein LJF99_00935 PF18073 Rubredoxin metal binding domain LJF99_00940 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LJF99_00955 PF06508 Queuosine biosynthesis protein QueC LJF99_00960 PF04055 Radical SAM superfamily LJF99_00965 PF12843 Putative quorum-sensing-regulated virulence factor LJF99_00970 PF01923 Cobalamin adenosyltransferase LJF99_00975 PF00816 H-NS histone family LJF99_00985 PF03553 Na+/H+ antiporter family LJF99_00990 PF00265 Thymidine kinase LJF99_01000 PF10722 Putative bacterial sensory transduction regulator LJF99_01015 PF01168 Alanine racemase, N-terminal domain LJF99_01015 PF00842 Alanine racemase, C-terminal domain LJF99_01020 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LJF99_01020 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LJF99_01025 PF13247 4Fe-4S dicluster domain LJF99_01030 PF03916 Polysulphide reductase, NrfD LJF99_01035 PF00374 Nickel-dependent hydrogenase LJF99_01040 PF01750 Hydrogenase maturation protease LJF99_01045 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LJF99_01050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_01055 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_01060 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_01060 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_01065 PF00005 ABC transporter LJF99_01070 PF00005 ABC transporter LJF99_01070 PF08402 TOBE domain LJF99_01075 PF02492 CobW/HypB/UreG, nucleotide-binding domain LJF99_01080 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LJF99_01085 PF00586 AIR synthase related protein, N-terminal domain LJF99_01085 PF02769 AIR synthase related protein, C-terminal domain LJF99_01090 PF01924 Hydrogenase formation hypA family LJF99_01095 PF01455 HupF/HypC family LJF99_01100 PF00708 Acylphosphatase LJF99_01100 PF17788 HypF Kae1-like domain LJF99_01100 PF01300 Telomere recombination LJF99_01100 PF07503 HypF finger LJF99_01105 PF09107 Elongation factor SelB, winged helix LJF99_01105 PF09106 Elongation factor SelB, winged helix LJF99_01105 PF03144 Elongation factor Tu domain 2 LJF99_01105 PF00009 Elongation factor Tu GTP binding domain LJF99_01110 PF12390 Selenocysteine synthase N terminal LJF99_01110 PF03841 L-seryl-tRNA selenium transferase LJF99_01120 PF01750 Hydrogenase maturation protease LJF99_01125 PF07450 Formate hydrogenlyase maturation protein HycH LJF99_01130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LJF99_01135 PF12838 4Fe-4S dicluster domain LJF99_01140 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LJF99_01140 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LJF99_01140 PF00374 Nickel-dependent hydrogenase LJF99_01145 PF00146 NADH dehydrogenase LJF99_01150 PF00361 Proton-conducting membrane transporter LJF99_01155 PF00037 4Fe-4S binding domain LJF99_01155 PF12798 4Fe-4S binding domain LJF99_01160 PF02705 K+ potassium transporter LJF99_01175 PF07693 KAP family P-loop domain LJF99_01180 PF13247 4Fe-4S dicluster domain LJF99_01180 PF12800 4Fe-4S binding domain LJF99_01195 PF01590 GAF domain LJF99_01195 PF02954 Bacterial regulatory protein, Fis family LJF99_01195 PF00158 Sigma-54 interaction domain LJF99_01200 PF02634 FdhD/NarQ family LJF99_01205 PF02132 RecR protein LJF99_01205 PF13662 Toprim domain LJF99_01210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_01210 PF00183 Hsp90 protein LJF99_01215 PF05191 Adenylate kinase, active site lid LJF99_01220 PF00762 Ferrochelatase LJF99_01225 PF01124 MAPEG family LJF99_01230 PF00294 pfkB family carbohydrate kinase LJF99_01235 PF00672 HAMP domain LJF99_01235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_01235 PF17200 Single Cache domain 2 LJF99_01250 PF00563 EAL domain LJF99_01250 PF00990 Diguanylate cyclase, GGDEF domain LJF99_01250 PF03707 Bacterial signalling protein N terminal repeat LJF99_01255 PF00483 Nucleotidyl transferase LJF99_01265 PF07273 Protein of unknown function (DUF1439) LJF99_01270 PF00425 chorismate binding enzyme LJF99_01275 PF00501 AMP-binding enzyme LJF99_01275 PF13193 AMP-binding enzyme C-terminal domain LJF99_01280 PF00550 Phosphopantetheine attachment site LJF99_01280 PF00857 Isochorismatase family LJF99_01285 PF00501 AMP-binding enzyme LJF99_01285 PF13193 AMP-binding enzyme C-terminal domain LJF99_01285 PF00668 Condensation domain LJF99_01285 PF00550 Phosphopantetheine attachment site LJF99_01285 PF00975 Thioesterase domain LJF99_01295 PF00501 AMP-binding enzyme LJF99_01295 PF13193 AMP-binding enzyme C-terminal domain LJF99_01295 PF00668 Condensation domain LJF99_01295 PF07993 Male sterility protein LJF99_01295 PF00550 Phosphopantetheine attachment site LJF99_01300 PF14765 Polyketide synthase dehydratase LJF99_01300 PF00550 Phosphopantetheine attachment site LJF99_01300 PF08659 KR domain LJF99_01300 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_01300 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_01300 PF00668 Condensation domain LJF99_01300 PF13193 AMP-binding enzyme C-terminal domain LJF99_01300 PF00501 AMP-binding enzyme LJF99_01300 PF16197 Ketoacyl-synthetase C-terminal extension LJF99_01305 PF01497 Periplasmic binding protein LJF99_01310 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LJF99_01310 PF01648 4'-phosphopantetheinyl transferase superfamily LJF99_01315 PF00005 ABC transporter LJF99_01320 PF01032 FecCD transport family LJF99_01325 PF01032 FecCD transport family LJF99_01330 PF00593 TonB dependent receptor LJF99_01330 PF07715 TonB-dependent Receptor Plug Domain LJF99_01345 PF11143 Protein of unknown function (DUF2919) LJF99_01350 PF01544 CorA-like Mg2+ transporter protein LJF99_01360 PF01012 Electron transfer flavoprotein domain LJF99_01365 PF00766 Electron transfer flavoprotein FAD-binding domain LJF99_01365 PF01012 Electron transfer flavoprotein domain LJF99_01370 PF00266 Aminotransferase class-V LJF99_01375 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LJF99_01380 PF00793 DAHP synthetase I family LJF99_01390 PF04055 Radical SAM superfamily LJF99_01395 PF02601 Exonuclease VII, large subunit LJF99_01395 PF13742 OB-fold nucleic acid binding domain LJF99_01400 PF01292 Prokaryotic cytochrome b561 LJF99_01405 PF02472 Biopolymer transport protein ExbD/TolR LJF99_01410 PF01618 MotA/TolQ/ExbB proton channel family LJF99_01420 PF00571 CBS domain LJF99_01420 PF00478 IMP dehydrogenase / GMP reductase domain LJF99_01425 PF00117 Glutamine amidotransferase class-I LJF99_01425 PF00958 GMP synthase C terminal domain LJF99_01425 PF02540 NAD synthase LJF99_01455 PF05724 Thiopurine S-methyltransferase (TPMT) LJF99_01460 PF00675 Insulinase (Peptidase family M16) LJF99_01460 PF05193 Peptidase M16 inactive domain LJF99_01460 PF16187 Middle or third domain of peptidase_M16 LJF99_01465 PF00300 Histidine phosphatase superfamily (branch 1) LJF99_01475 PF00892 EamA-like transporter family LJF99_01480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_01485 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LJF99_01490 PF00270 DEAD/DEAH box helicase LJF99_01490 PF00271 Helicase conserved C-terminal domain LJF99_01490 PF17757 UvrB interaction domain LJF99_01490 PF02559 CarD-like/TRCF domain LJF99_01490 PF03461 TRCF domain LJF99_01500 PF02687 FtsX-like permease family LJF99_01500 PF12704 MacB-like periplasmic core domain LJF99_01505 PF00005 ABC transporter LJF99_01510 PF02687 FtsX-like permease family LJF99_01510 PF12704 MacB-like periplasmic core domain LJF99_01525 PF05697 Bacterial trigger factor protein (TF) LJF99_01525 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_01525 PF05698 Bacterial trigger factor protein (TF) C-terminus LJF99_01530 PF00574 Clp protease LJF99_01535 PF06689 ClpX C4-type zinc finger LJF99_01535 PF10431 C-terminal, D2-small domain, of ClpB protein LJF99_01535 PF07724 AAA domain (Cdc48 subfamily) LJF99_01540 PF02190 ATP-dependent protease La (LON) substrate-binding domain LJF99_01540 PF05362 Lon protease (S16) C-terminal proteolytic domain LJF99_01540 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_01545 PF00216 Bacterial DNA-binding protein LJF99_01550 PF13145 PPIC-type PPIASE domain LJF99_01555 PF00005 ABC transporter LJF99_01555 PF12848 ABC transporter LJF99_01560 PF00474 Sodium:solute symporter family LJF99_01565 PF04341 Protein of unknown function, DUF485 LJF99_01580 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LJF99_01580 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LJF99_01580 PF00378 Enoyl-CoA hydratase/isomerase LJF99_01585 PF01235 Sodium:alanine symporter family LJF99_01590 PF00583 Acetyltransferase (GNAT) family LJF99_01600 PF01184 GPR1/FUN34/yaaH family LJF99_01615 PF00376 MerR family regulatory protein LJF99_01615 PF09278 MerR, DNA binding LJF99_01620 PF00682 HMGL-like LJF99_01625 PF00364 Biotin-requiring enzyme LJF99_01625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJF99_01625 PF02785 Biotin carboxylase C-terminal domain LJF99_01625 PF00289 Biotin carboxylase, N-terminal domain LJF99_01630 PF00378 Enoyl-CoA hydratase/isomerase LJF99_01635 PF01039 Carboxyl transferase domain LJF99_01640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJF99_01640 PF02770 Acyl-CoA dehydrogenase, middle domain LJF99_01640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJF99_01645 PF00171 Aldehyde dehydrogenase family LJF99_01650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJF99_01650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJF99_01650 PF02770 Acyl-CoA dehydrogenase, middle domain LJF99_01655 PF00378 Enoyl-CoA hydratase/isomerase LJF99_01660 PF00378 Enoyl-CoA hydratase/isomerase LJF99_01665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LJF99_01665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LJF99_01675 PF13520 Amino acid permease LJF99_01680 PF01925 Sulfite exporter TauE/SafE LJF99_01715 PF13358 DDE superfamily endonuclease LJF99_01715 PF13592 Winged helix-turn helix LJF99_01735 PF00990 Diguanylate cyclase, GGDEF domain LJF99_01735 PF08448 PAS fold LJF99_01740 PF01713 Smr domain LJF99_01745 PF05175 Methyltransferase small domain LJF99_01750 PF01264 Chorismate synthase LJF99_01760 PF00270 DEAD/DEAH box helicase LJF99_01760 PF00271 Helicase conserved C-terminal domain LJF99_01775 PF03222 Tryptophan/tyrosine permease family LJF99_01780 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJF99_01780 PF00356 Bacterial regulatory proteins, lacI family LJF99_01785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJF99_01785 PF00381 PTS HPr component phosphorylation site LJF99_01790 PF00294 pfkB family carbohydrate kinase LJF99_01795 PF02378 Phosphotransferase system, EIIC LJF99_01795 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJF99_01800 PF06945 Protein of unknown function (DUF1289) LJF99_01805 PF03562 MltA specific insert domain LJF99_01805 PF06725 3D domain LJF99_01810 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_01815 PF00268 Ribonucleotide reductase, small chain LJF99_01820 PF03477 ATP cone domain LJF99_01820 PF02867 Ribonucleotide reductase, barrel domain LJF99_01820 PF00317 Ribonucleotide reductase, all-alpha domain LJF99_01825 PF13419 Haloacid dehalogenase-like hydrolase LJF99_01835 PF03989 DNA gyrase C-terminal domain, beta-propeller LJF99_01835 PF00521 DNA gyrase/topoisomerase IV, subunit A LJF99_01845 PF04055 Radical SAM superfamily LJF99_01855 PF03129 Anticodon binding domain LJF99_01855 PF02824 TGS domain LJF99_01855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJF99_01855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LJF99_01860 PF00707 Translation initiation factor IF-3, C-terminal domain LJF99_01860 PF05198 Translation initiation factor IF-3, N-terminal domain LJF99_01865 PF01632 Ribosomal protein L35 LJF99_01870 PF00453 Ribosomal protein L20 LJF99_01875 PF01409 tRNA synthetases class II core domain (F) LJF99_01875 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LJF99_01880 PF03484 tRNA synthetase B5 domain LJF99_01880 PF03483 B3/4 domain LJF99_01880 PF01588 Putative tRNA binding domain LJF99_01880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LJF99_01880 PF03147 Ferredoxin-fold anticodon binding domain LJF99_01885 PF00216 Bacterial DNA-binding protein LJF99_01905 PF02146 Sir2 family LJF99_01915 PF17152 Periplasmic sensor domain LJF99_01915 PF00990 Diguanylate cyclase, GGDEF domain LJF99_01920 PF00356 Bacterial regulatory proteins, lacI family LJF99_01925 PF00294 pfkB family carbohydrate kinase LJF99_01930 PF13407 Periplasmic binding protein domain LJF99_01935 PF02653 Branched-chain amino acid transport system / permease component LJF99_01945 PF05025 RbsD / FucU transport protein family LJF99_01950 PF00043 Glutathione S-transferase, C-terminal domain LJF99_01950 PF02798 Glutathione S-transferase, N-terminal domain LJF99_01965 PF01171 PP-loop family LJF99_01970 PF00582 Universal stress protein family LJF99_01975 PF00027 Cyclic nucleotide-binding domain LJF99_01975 PF13545 Crp-like helix-turn-helix domain LJF99_01990 PF00403 Heavy-metal-associated domain LJF99_02000 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LJF99_02000 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LJF99_02015 PF00115 Cytochrome C and Quinol oxidase polypeptide I LJF99_02025 PF13185 GAF domain LJF99_02030 PF04352 ProQ/FINO family LJF99_02030 PF17516 ProQ C-terminal domain LJF99_02035 PF11818 C-terminal domain of tail specific protease (DUF3340) LJF99_02035 PF17804 Tail specific protease N-terminal domain LJF99_02035 PF03572 Peptidase family S41 LJF99_02035 PF00595 PDZ domain LJF99_02040 PF01433 Peptidase family M1 domain LJF99_02040 PF11940 Domain of unknown function (DUF3458) Ig-like fold LJF99_02040 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LJF99_02050 PF05088 Bacterial NAD-glutamate dehydrogenase LJF99_02055 PF01180 Dihydroorotate dehydrogenase LJF99_02060 PF07126 Cell-division protein ZapC LJF99_02065 PF10672 S-adenosylmethionine-dependent methyltransferase LJF99_02065 PF02926 THUMP domain LJF99_02065 PF01170 Putative RNA methylase family UPF0020 LJF99_02075 PF00005 ABC transporter LJF99_02075 PF16326 ABC transporter C-terminal domain LJF99_02075 PF12848 ABC transporter LJF99_02085 PF04957 Ribosome modulation factor LJF99_02090 PF07977 FabA-like domain LJF99_02095 PF05362 Lon protease (S16) C-terminal proteolytic domain LJF99_02095 PF13654 AAA domain LJF99_02110 PF05707 Zonular occludens toxin (Zot) LJF99_02125 PF00665 Integrase core domain LJF99_02130 PF01695 IstB-like ATP binding protein LJF99_02200 PF00106 short chain dehydrogenase LJF99_02225 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LJF99_02225 PF06974 Protein of unknown function (DUF1298) LJF99_02240 PF03972 MmgE/PrpD family LJF99_02260 PF04403 Paraquat-inducible protein A LJF99_02270 PF01189 16S rRNA methyltransferase RsmB/F LJF99_02270 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LJF99_02270 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LJF99_02285 PF01026 TatD related DNase LJF99_02290 PF09115 DNA polymerase III, delta subunit, C terminal LJF99_02295 PF02223 Thymidylate kinase LJF99_02300 PF02618 YceG-like family LJF99_02305 PF01063 Amino-transferase class IV LJF99_02310 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_02310 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_02315 PF00550 Phosphopantetheine attachment site LJF99_02325 PF00698 Acyl transferase domain LJF99_02330 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJF99_02330 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJF99_02335 PF02504 Fatty acid synthesis protein LJF99_02340 PF01783 Ribosomal L32p protein family LJF99_02345 PF02620 Large ribosomal RNA subunit accumulation protein YceD LJF99_02350 PF02545 Maf-like protein LJF99_02355 PF13419 Haloacid dehalogenase-like hydrolase LJF99_02360 PF00849 RNA pseudouridylate synthase LJF99_02360 PF01479 S4 domain LJF99_02365 PF10150 Ribonuclease E/G family LJF99_02365 PF00575 S1 RNA binding domain LJF99_02365 PF12111 Polyribonucleotide phosphorylase C terminal LJF99_02370 PF01384 Phosphate transporter family LJF99_02375 PF00692 dUTPase LJF99_02380 PF00485 Phosphoribulokinase / Uridine kinase family LJF99_02385 PF10609 NUBPL iron-transfer P-loop NTPase LJF99_02390 PF01588 Putative tRNA binding domain LJF99_02390 PF09334 tRNA synthetases class I (M) LJF99_02390 PF08264 Anticodon-binding domain of tRNA LJF99_02395 PF02798 Glutathione S-transferase, N-terminal domain LJF99_02395 PF00043 Glutathione S-transferase, C-terminal domain LJF99_02400 PF00708 Acylphosphatase LJF99_02405 PF00672 HAMP domain LJF99_02405 PF12729 Four helix bundle sensory module for signal transduction LJF99_02405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_02410 PF10672 S-adenosylmethionine-dependent methyltransferase LJF99_02410 PF17785 PUA-like domain LJF99_02425 PF02769 AIR synthase related protein, C-terminal domain LJF99_02425 PF00586 AIR synthase related protein, N-terminal domain LJF99_02435 PF00753 Metallo-beta-lactamase superfamily LJF99_02440 PF01386 Ribosomal L25p family LJF99_02450 PF00271 Helicase conserved C-terminal domain LJF99_02450 PF04408 Helicase associated domain (HA2) LJF99_02450 PF11898 Domain of unknown function (DUF3418) LJF99_02450 PF00270 DEAD/DEAH box helicase LJF99_02450 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LJF99_02455 PF01368 DHH family LJF99_02455 PF01743 Poly A polymerase head domain LJF99_02455 PF02272 DHHA1 domain LJF99_02455 PF00571 CBS domain LJF99_02460 PF00072 Response regulator receiver domain LJF99_02460 PF00196 Bacterial regulatory proteins, luxR family LJF99_02465 PF07670 Nucleoside recognition LJF99_02470 PF02575 YbaB/EbfC DNA-binding family LJF99_02475 PF12169 DNA polymerase III subunits gamma and tau domain III LJF99_02475 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LJF99_02475 PF12170 DNA polymerase III tau subunit V interacting with alpha LJF99_02480 PF00156 Phosphoribosyl transferase domain LJF99_02485 PF04304 Protein of unknown function (DUF454) LJF99_02490 PF01207 Dihydrouridine synthase (Dus) LJF99_02505 PF01612 3'-5' exonuclease LJF99_02505 PF00570 HRDC domain LJF99_02510 PF00501 AMP-binding enzyme LJF99_02510 PF13193 AMP-binding enzyme C-terminal domain LJF99_02515 PF12697 Alpha/beta hydrolase family LJF99_02525 PF00814 Glycoprotease family LJF99_02530 PF13307 Helicase C-terminal domain LJF99_02530 PF04851 Type III restriction enzyme, res subunit LJF99_02540 PF08029 HisG, C-terminal domain LJF99_02540 PF01634 ATP phosphoribosyltransferase LJF99_02545 PF00815 Histidinol dehydrogenase LJF99_02550 PF00155 Aminotransferase class I and II LJF99_02555 PF08645 Polynucleotide kinase 3 phosphatase LJF99_02555 PF00475 Imidazoleglycerol-phosphate dehydratase LJF99_02560 PF00117 Glutamine amidotransferase class-I LJF99_02565 PF00977 Histidine biosynthesis protein LJF99_02570 PF00072 Response regulator receiver domain LJF99_02575 PF00990 Diguanylate cyclase, GGDEF domain LJF99_02575 PF08448 PAS fold LJF99_02580 PF00072 Response regulator receiver domain LJF99_02580 PF01627 Hpt domain LJF99_02580 PF00512 His Kinase A (phospho-acceptor) domain LJF99_02580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_02585 PF00977 Histidine biosynthesis protein LJF99_02590 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LJF99_02590 PF01502 Phosphoribosyl-AMP cyclohydrolase LJF99_02600 PF08279 HTH domain LJF99_02600 PF13280 WYL domain LJF99_02605 PF13193 AMP-binding enzyme C-terminal domain LJF99_02605 PF00501 AMP-binding enzyme LJF99_02630 PF01338 Bacillus thuringiensis toxin LJF99_02655 PF04972 BON domain LJF99_02660 PF00990 Diguanylate cyclase, GGDEF domain LJF99_02660 PF01590 GAF domain LJF99_02660 PF00360 Phytochrome region LJF99_02660 PF00563 EAL domain LJF99_02665 PF02653 Branched-chain amino acid transport system / permease component LJF99_02670 PF02653 Branched-chain amino acid transport system / permease component LJF99_02675 PF00005 ABC transporter LJF99_02680 PF13407 Periplasmic binding protein domain LJF99_02685 PF13592 Winged helix-turn helix LJF99_02685 PF13358 DDE superfamily endonuclease LJF99_02690 PF08329 Chitinase A, N-terminal domain LJF99_02690 PF00704 Glycosyl hydrolases family 18 LJF99_02700 PF08274 PhnA Zinc-Ribbon LJF99_02700 PF03831 PhnA domain LJF99_02705 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LJF99_02705 PF00378 Enoyl-CoA hydratase/isomerase LJF99_02705 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LJF99_02710 PF02803 Thiolase, C-terminal domain LJF99_02710 PF00108 Thiolase, N-terminal domain LJF99_02715 PF07726 ATPase family associated with various cellular activities (AAA) LJF99_02715 PF17863 AAA lid domain LJF99_02720 PF01882 Protein of unknown function DUF58 LJF99_02730 PF07728 AAA domain (dynein-related subfamily) LJF99_02730 PF17863 AAA lid domain LJF99_02730 PF13519 von Willebrand factor type A domain LJF99_02745 PF04542 Sigma-70 region 2 LJF99_02745 PF04545 Sigma-70, region 4 LJF99_02755 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJF99_02760 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LJF99_02765 PF08668 HDOD domain LJF99_02765 PF00563 EAL domain LJF99_02770 PF00108 Thiolase, N-terminal domain LJF99_02770 PF02803 Thiolase, C-terminal domain LJF99_02775 PF00376 MerR family regulatory protein LJF99_02775 PF09278 MerR, DNA binding LJF99_02780 PF00375 Sodium:dicarboxylate symporter family LJF99_02785 PF06865 Pyrimidine/purine nucleoside phosphorylase LJF99_02790 PF03315 Serine dehydratase beta chain LJF99_02790 PF03313 Serine dehydratase alpha chain LJF99_02795 PF03315 Serine dehydratase beta chain LJF99_02795 PF03313 Serine dehydratase alpha chain LJF99_02800 PF13406 Transglycosylase SLT domain LJF99_02805 PF05166 YcgL domain LJF99_02810 PF03775 Septum formation inhibitor MinC, C-terminal domain LJF99_02810 PF05209 Septum formation inhibitor MinC, N-terminal domain LJF99_02815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LJF99_02820 PF03776 Septum formation topological specificity factor MinE LJF99_02825 PF04269 Protein of unknown function, DUF440 LJF99_02830 PF00912 Transglycosylase LJF99_02840 PF04269 Protein of unknown function, DUF440 LJF99_02850 PF17783 CvfB-like winged helix domain LJF99_02850 PF13509 S1 domain LJF99_02875 PF02525 Flavodoxin-like fold LJF99_02880 PF00892 EamA-like transporter family LJF99_02885 PF02222 ATP-grasp domain LJF99_02890 PF13419 Haloacid dehalogenase-like hydrolase LJF99_02900 PF00677 Lumazine binding domain LJF99_02905 PF06786 Uncharacterised protein family (UPF0253) LJF99_02910 PF01554 MatE LJF99_02935 PF00136 DNA polymerase family B LJF99_02935 PF03104 DNA polymerase family B, exonuclease domain LJF99_02945 PF00990 Diguanylate cyclase, GGDEF domain LJF99_02960 PF03279 Bacterial lipid A biosynthesis acyltransferase LJF99_02965 PF03279 Bacterial lipid A biosynthesis acyltransferase LJF99_02975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_02975 PF03466 LysR substrate binding domain LJF99_02980 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LJF99_02980 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LJF99_02985 PF01261 Xylose isomerase-like TIM barrel LJF99_02990 PF03466 LysR substrate binding domain LJF99_02990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_03005 PF03606 C4-dicarboxylate anaerobic carrier LJF99_03015 PF05433 Glycine zipper 2TM domain LJF99_03035 PF01032 FecCD transport family LJF99_03040 PF00005 ABC transporter LJF99_03045 PF07690 Major Facilitator Superfamily LJF99_03055 PF07152 YaeQ protein LJF99_03115 PF03330 Lytic transglycolase LJF99_03115 PF05036 Sporulation related domain LJF99_03120 PF04310 MukB N-terminal LJF99_03120 PF16330 MukB hinge domain LJF99_03125 PF04288 MukE-like family LJF99_03130 PF17193 MukF C-terminal domain LJF99_03130 PF03882 MukF winged-helix domain LJF99_03130 PF17192 MukF middle domain LJF99_03135 PF13847 Methyltransferase domain LJF99_03140 PF02698 DUF218 domain LJF99_03145 PF00121 Triosephosphate isomerase LJF99_03150 PF00365 Phosphofructokinase LJF99_03170 PF13358 DDE superfamily endonuclease LJF99_03170 PF13592 Winged helix-turn helix LJF99_03200 PF13419 Haloacid dehalogenase-like hydrolase LJF99_03205 PF00883 Cytosol aminopeptidase family, catalytic domain LJF99_03205 PF02789 Cytosol aminopeptidase family, N-terminal domain LJF99_03235 PF13592 Winged helix-turn helix LJF99_03235 PF13358 DDE superfamily endonuclease LJF99_03245 PF11398 Protein of unknown function (DUF2813) LJF99_03250 PF14525 AraC-binding-like domain LJF99_03250 PF12833 Helix-turn-helix domain LJF99_03260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_03260 PF03466 LysR substrate binding domain LJF99_03265 PF01925 Sulfite exporter TauE/SafE LJF99_03270 PF03942 DTW domain LJF99_03280 PF07478 D-ala D-ala ligase C-terminus LJF99_03280 PF01820 D-ala D-ala ligase N-terminus LJF99_03290 PF00255 Glutathione peroxidase LJF99_03295 PF00271 Helicase conserved C-terminal domain LJF99_03295 PF00270 DEAD/DEAH box helicase LJF99_03300 PF13673 Acetyltransferase (GNAT) domain LJF99_03310 PF02694 Uncharacterised BCR, YnfA/UPF0060 family LJF99_03325 PF01928 CYTH domain LJF99_03345 PF00465 Iron-containing alcohol dehydrogenase LJF99_03350 PF03992 Antibiotic biosynthesis monooxygenase LJF99_03355 PF08543 Phosphomethylpyrimidine kinase LJF99_03375 PF00561 alpha/beta hydrolase fold LJF99_03375 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus LJF99_03380 PF01575 MaoC like domain LJF99_03395 PF00664 ABC transporter transmembrane region LJF99_03395 PF00005 ABC transporter LJF99_03405 PF00512 His Kinase A (phospho-acceptor) domain LJF99_03405 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJF99_03405 PF00072 Response regulator receiver domain LJF99_03405 PF00672 HAMP domain LJF99_03405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_03405 PF01627 Hpt domain LJF99_03410 PF00085 Thioredoxin LJF99_03415 PF00939 Sodium:sulfate symporter transmembrane region LJF99_03420 PF00343 Carbohydrate phosphorylase LJF99_03445 PF00425 chorismate binding enzyme LJF99_03445 PF04715 Anthranilate synthase component I, N terminal region LJF99_03450 PF00293 NUDIX domain LJF99_03455 PF03222 Tryptophan/tyrosine permease family LJF99_03460 PF00375 Sodium:dicarboxylate symporter family LJF99_03465 PF09382 RQC domain LJF99_03465 PF16124 RecQ zinc-binding LJF99_03465 PF00570 HRDC domain LJF99_03465 PF00271 Helicase conserved C-terminal domain LJF99_03465 PF00270 DEAD/DEAH box helicase LJF99_03470 PF08298 PrkA AAA domain LJF99_03470 PF06798 PrkA serine protein kinase C-terminal domain LJF99_03475 PF04285 Protein of unknown function (DUF444) LJF99_03480 PF04293 SpoVR like protein LJF99_03485 PF07840 FadR C-terminal domain LJF99_03485 PF00392 Bacterial regulatory proteins, gntR family LJF99_03490 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LJF99_03495 PF02600 Disulfide bond formation protein DsbB LJF99_03500 PF09335 SNARE associated Golgi protein LJF99_03510 PF00271 Helicase conserved C-terminal domain LJF99_03510 PF04851 Type III restriction enzyme, res subunit LJF99_03510 PF02151 UvrB/uvrC motif LJF99_03510 PF12344 Ultra-violet resistance protein B LJF99_03510 PF17757 UvrB interaction domain LJF99_03520 PF02080 TrkA-C domain LJF99_03520 PF06826 Predicted Permease Membrane Region LJF99_03525 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_03525 PF01464 Transglycosylase SLT domain LJF99_03540 PF01970 Tripartite tricarboxylate transporter TctA family LJF99_03545 PF12431 Transcriptional regulator LJF99_03545 PF08279 HTH domain LJF99_03545 PF00072 Response regulator receiver domain LJF99_03550 PF00989 PAS fold LJF99_03550 PF17203 Single cache domain 3 LJF99_03550 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LJF99_03550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_03555 PF01047 MarR family LJF99_03555 PF00480 ROK family LJF99_03560 PF00672 HAMP domain LJF99_03560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_03560 PF17200 Single Cache domain 2 LJF99_03565 PF02810 SEC-C motif LJF99_03570 PF04324 BFD-like [2Fe-2S] binding domain LJF99_03570 PF01266 FAD dependent oxidoreductase LJF99_03575 PF00890 FAD binding domain LJF99_03580 PF13183 4Fe-4S dicluster domain LJF99_03580 PF02754 Cysteine-rich domain LJF99_03585 PF02335 Cytochrome c552 LJF99_03590 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LJF99_03590 PF13435 Cytochrome c554 and c-prime LJF99_03595 PF00037 4Fe-4S binding domain LJF99_03595 PF13247 4Fe-4S dicluster domain LJF99_03600 PF03916 Polysulphide reductase, NrfD LJF99_03605 PF01578 Cytochrome C assembly protein LJF99_03605 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LJF99_03610 PF08534 Redoxin LJF99_03615 PF03918 Cytochrome C biogenesis protein LJF99_03625 PF00768 D-alanyl-D-alanine carboxypeptidase LJF99_03630 PF01212 Beta-eliminating lyase LJF99_03640 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LJF99_03645 PF01266 FAD dependent oxidoreductase LJF99_03655 PF07969 Amidohydrolase family LJF99_03670 PF01717 Cobalamin-independent synthase, Catalytic domain LJF99_03670 PF08267 Cobalamin-independent synthase, N-terminal domain LJF99_03675 PF03466 LysR substrate binding domain LJF99_03675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_03685 PF07715 TonB-dependent Receptor Plug Domain LJF99_03685 PF00593 TonB dependent receptor LJF99_03690 PF06445 GyrI-like small molecule binding domain LJF99_03690 PF12833 Helix-turn-helix domain LJF99_03695 PF00106 short chain dehydrogenase LJF99_03700 PF03466 LysR substrate binding domain LJF99_03700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_03705 PF13460 NAD(P)H-binding LJF99_03715 PF01053 Cys/Met metabolism PLP-dependent enzyme LJF99_03720 PF05193 Peptidase M16 inactive domain LJF99_03720 PF00675 Insulinase (Peptidase family M16) LJF99_03725 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJF99_03725 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJF99_03730 PF18381 YcaO cyclodehydratase C-terminal domain LJF99_03730 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LJF99_03735 PF01226 Formate/nitrite transporter LJF99_03740 PF01228 Glycine radical LJF99_03740 PF02901 Pyruvate formate lyase-like LJF99_03745 PF03692 Putative zinc- or iron-chelating domain LJF99_03750 PF02629 CoA binding domain LJF99_03750 PF00549 CoA-ligase LJF99_03755 PF08442 ATP-grasp domain LJF99_03755 PF00549 CoA-ligase LJF99_03760 PF00364 Biotin-requiring enzyme LJF99_03760 PF02817 e3 binding domain LJF99_03760 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJF99_03765 PF02779 Transketolase, pyrimidine binding domain LJF99_03765 PF16870 2-oxoglutarate dehydrogenase C-terminal LJF99_03765 PF00676 Dehydrogenase E1 component LJF99_03765 PF16078 2-oxoglutarate dehydrogenase N-terminus LJF99_03770 PF13085 2Fe-2S iron-sulfur cluster binding domain LJF99_03775 PF00890 FAD binding domain LJF99_03775 PF02910 Fumarate reductase flavoprotein C-term LJF99_03780 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LJF99_03785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LJF99_03790 PF00285 Citrate synthase, C-terminal domain LJF99_03805 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_03805 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_03810 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LJF99_03810 PF01266 FAD dependent oxidoreductase LJF99_03820 PF03606 C4-dicarboxylate anaerobic carrier LJF99_03835 PF01863 Protein of unknown function DUF45 LJF99_03850 PF01197 Ribosomal protein L31 LJF99_03855 PF00444 Ribosomal protein L36 LJF99_03860 PF00224 Pyruvate kinase, barrel domain LJF99_03860 PF02887 Pyruvate kinase, alpha/beta domain LJF99_03865 PF00367 phosphotransferase system, EIIB LJF99_03865 PF02378 Phosphotransferase system, EIIC LJF99_03870 PF02449 Beta-galactosidase LJF99_03870 PF08533 Beta-galactosidase C-terminal domain LJF99_03870 PF08532 Beta-galactosidase trimerisation domain LJF99_03875 PF07745 Glycosyl hydrolase family 53 LJF99_03880 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_03885 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_03890 PF13416 Bacterial extracellular solute-binding protein LJF99_03915 PF00672 HAMP domain LJF99_03915 PF12729 Four helix bundle sensory module for signal transduction LJF99_03915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_03925 PF07745 Glycosyl hydrolase family 53 LJF99_03930 PF07745 Glycosyl hydrolase family 53 LJF99_03935 PF02264 LamB porin LJF99_03940 PF00356 Bacterial regulatory proteins, lacI family LJF99_03945 PF16363 GDP-mannose 4,6 dehydratase LJF99_03950 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LJF99_03950 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LJF99_03955 PF10509 Galactokinase galactose-binding signature LJF99_03955 PF08544 GHMP kinases C terminal LJF99_03955 PF00288 GHMP kinases N terminal domain LJF99_03960 PF02311 AraC-like ligand binding domain LJF99_03960 PF12833 Helix-turn-helix domain LJF99_03965 PF02653 Branched-chain amino acid transport system / permease component LJF99_03970 PF00005 ABC transporter LJF99_03975 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJF99_03980 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LJF99_03985 PF00596 Class II Aldolase and Adducin N-terminal domain LJF99_03990 PF11762 L-arabinose isomerase C-terminal domain LJF99_03990 PF02610 L-arabinose isomerase LJF99_03995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_03995 PF03466 LysR substrate binding domain LJF99_04005 PF00795 Carbon-nitrogen hydrolase LJF99_04010 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_04020 PF08411 Exonuclease C-terminal LJF99_04020 PF00929 Exonuclease LJF99_04035 PF03788 LrgA family LJF99_04040 PF04172 LrgB-like family LJF99_04045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJF99_04045 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LJF99_04050 PF00501 AMP-binding enzyme LJF99_04055 PF08891 YfcL protein LJF99_04065 PF03741 Integral membrane protein TerC family LJF99_04070 PF00691 OmpA family LJF99_04075 PF17152 Periplasmic sensor domain LJF99_04075 PF00990 Diguanylate cyclase, GGDEF domain LJF99_04080 PF13689 YfiR/HmsC-like LJF99_04085 PF18024 Helix-turn-helix domain LJF99_04085 PF00158 Sigma-54 interaction domain LJF99_04090 PF01329 Pterin 4 alpha carbinolamine dehydratase LJF99_04095 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LJF99_04100 PF05128 Domain of unknown function (DUF697) LJF99_04105 PF04317 YcjX-like family, DUF463 LJF99_04115 PF06667 Phage shock protein B LJF99_04120 PF04012 PspA/IM30 family LJF99_04125 PF00158 Sigma-54 interaction domain LJF99_04125 PF02954 Bacterial regulatory protein, Fis family LJF99_04130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_04135 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_04140 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_04140 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_04145 PF00005 ABC transporter LJF99_04145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_04150 PF00005 ABC transporter LJF99_04160 PF00156 Phosphoribosyl transferase domain LJF99_04165 PF02674 Colicin V production protein LJF99_04170 PF02403 Seryl-tRNA synthetase N-terminal domain LJF99_04170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJF99_04175 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_04175 PF16193 AAA C-terminal domain LJF99_04175 PF12002 MgsA AAA+ ATPase C terminal LJF99_04180 PF03548 Outer membrane lipoprotein carrier protein LolA LJF99_04185 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LJF99_04185 PF17854 FtsK alpha domain LJF99_04185 PF09397 Ftsk gamma domain LJF99_04185 PF01580 FtsK/SpoIIIE family LJF99_04190 PF01037 Lrp/AsnC ligand binding domain LJF99_04205 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_04210 PF17158 Membrane-associated sensor, integral membrane domain LJF99_04210 PF00990 Diguanylate cyclase, GGDEF domain LJF99_04215 PF05433 Glycine zipper 2TM domain LJF99_04220 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LJF99_04225 PF04377 Arginine-tRNA-protein transferase, C terminus LJF99_04225 PF04376 Arginine-tRNA-protein transferase, N terminus LJF99_04230 PF01176 Translation initiation factor 1A / IF-1 LJF99_04235 PF02861 Clp amino terminal domain, pathogenicity island component LJF99_04235 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_04235 PF07724 AAA domain (Cdc48 subfamily) LJF99_04235 PF17871 AAA lid domain LJF99_04235 PF10431 C-terminal, D2-small domain, of ClpB protein LJF99_04240 PF02617 ATP-dependent Clp protease adaptor protein ClpS LJF99_04245 PF00313 'Cold-shock' DNA-binding domain LJF99_04250 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LJF99_04250 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LJF99_04300 PF14331 ImcF-related N-terminal domain LJF99_04300 PF06744 Type VI secretion protein IcmF C-terminal LJF99_04300 PF06761 Intracellular multiplication and human macrophage-killing LJF99_04310 PF00158 Sigma-54 interaction domain LJF99_04310 PF02954 Bacterial regulatory protein, Fis family LJF99_04315 PF17871 AAA lid domain LJF99_04315 PF07724 AAA domain (Cdc48 subfamily) LJF99_04315 PF10431 C-terminal, D2-small domain, of ClpB protein LJF99_04315 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_04325 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE LJF99_04345 PF05947 Type VI secretion system, TssF LJF99_04380 PF00916 Sulfate permease family LJF99_04380 PF01740 STAS domain LJF99_04395 PF13358 DDE superfamily endonuclease LJF99_04395 PF13592 Winged helix-turn helix LJF99_04425 PF00892 EamA-like transporter family LJF99_04430 PF02508 Rnf-Nqr subunit, membrane protein LJF99_04435 PF04060 Putative Fe-S cluster LJF99_04440 PF13375 RnfC Barrel sandwich hybrid domain LJF99_04440 PF10531 SLBB domain LJF99_04440 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LJF99_04440 PF12838 4Fe-4S dicluster domain LJF99_04445 PF03116 NQR2, RnfD, RnfE family LJF99_04450 PF04205 FMN-binding domain LJF99_04455 PF02508 Rnf-Nqr subunit, membrane protein LJF99_04460 PF10576 Iron-sulfur binding domain of endonuclease III LJF99_04460 PF00633 Helix-hairpin-helix motif LJF99_04460 PF00730 HhH-GPD superfamily base excision DNA repair protein LJF99_04465 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_04470 PF18393 MotY N-terminal domain LJF99_04470 PF00691 OmpA family LJF99_04475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_04475 PF00672 HAMP domain LJF99_04475 PF12729 Four helix bundle sensory module for signal transduction LJF99_04480 PF00929 Exonuclease LJF99_04485 PF03553 Na+/H+ antiporter family LJF99_04485 PF13726 Na+-H+ antiporter family LJF99_04490 PF00990 Diguanylate cyclase, GGDEF domain LJF99_04490 PF03707 Bacterial signalling protein N terminal repeat LJF99_04490 PF13188 PAS domain LJF99_04490 PF00563 EAL domain LJF99_04500 PF03880 DbpA RNA binding domain LJF99_04500 PF00270 DEAD/DEAH box helicase LJF99_04500 PF00271 Helicase conserved C-terminal domain LJF99_04505 PF03061 Thioesterase superfamily LJF99_04515 PF02913 FAD linked oxidases, C-terminal domain LJF99_04515 PF01565 FAD binding domain LJF99_04515 PF13183 4Fe-4S dicluster domain LJF99_04525 PF03471 Transporter associated domain LJF99_04525 PF03741 Integral membrane protein TerC family LJF99_04530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJF99_04535 PF00962 Adenosine/AMP deaminase LJF99_04540 PF13344 Haloacid dehalogenase-like hydrolase LJF99_04545 PF00999 Sodium/hydrogen exchanger family LJF99_04545 PF02254 TrkA-N domain LJF99_04555 PF00733 Asparagine synthase LJF99_04555 PF13537 Glutamine amidotransferase domain LJF99_04560 PF03577 Peptidase family C69 LJF99_04565 PF13358 DDE superfamily endonuclease LJF99_04565 PF13592 Winged helix-turn helix LJF99_04575 PF00043 Glutathione S-transferase, C-terminal domain LJF99_04575 PF13417 Glutathione S-transferase, N-terminal domain LJF99_04580 PF02798 Glutathione S-transferase, N-terminal domain LJF99_04580 PF14497 Glutathione S-transferase, C-terminal domain LJF99_04595 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_04605 PF00849 RNA pseudouridylate synthase LJF99_04615 PF08447 PAS fold LJF99_04615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_04625 PF01027 Inhibitor of apoptosis-promoting Bax1 LJF99_04630 PF12805 FUSC-like inner membrane protein yccS LJF99_04635 PF04358 DsrC like protein LJF99_04640 PF05036 Sporulation related domain LJF99_04645 PF08245 Mur ligase middle domain LJF99_04645 PF02875 Mur ligase family, glutamate ligase domain LJF99_04650 PF01039 Carboxyl transferase domain LJF99_04650 PF17848 Acetyl-coA carboxylase zinc finger domain LJF99_04655 PF01416 tRNA pseudouridine synthase LJF99_04665 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJF99_04665 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJF99_04670 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJF99_04670 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_04670 PF11890 Domain of unknown function (DUF3410) LJF99_04675 PF01569 PAP2 superfamily LJF99_04680 PF03180 NLPA lipoprotein LJF99_04700 PF01483 Proprotein convertase P-domain LJF99_04700 PF00082 Subtilase family LJF99_04710 PF14310 Fibronectin type III-like domain LJF99_04710 PF00933 Glycosyl hydrolase family 3 N terminal domain LJF99_04710 PF01915 Glycosyl hydrolase family 3 C-terminal domain LJF99_04720 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LJF99_04720 PF00391 PEP-utilising enzyme, mobile domain LJF99_04720 PF02896 PEP-utilising enzyme, TIM barrel domain LJF99_04725 PF03618 Kinase/pyrophosphorylase LJF99_04735 PF00324 Amino acid permease LJF99_04765 PF03239 Iron permease FTR1 family LJF99_04770 PF01593 Flavin containing amine oxidoreductase LJF99_04795 PF03600 Citrate transporter LJF99_04810 PF02687 FtsX-like permease family LJF99_04810 PF12704 MacB-like periplasmic core domain LJF99_04825 PF02308 MgtC family LJF99_04865 PF01625 Peptide methionine sulfoxide reductase LJF99_04870 PF00583 Acetyltransferase (GNAT) family LJF99_04870 PF00696 Amino acid kinase family LJF99_04875 PF00696 Amino acid kinase family LJF99_04875 PF01842 ACT domain LJF99_04885 PF00884 Sulfatase LJF99_04890 PF02016 LD-carboxypeptidase N-terminal domain LJF99_04890 PF17676 LD-carboxypeptidase C-terminal domain LJF99_04900 PF01906 Putative heavy-metal-binding LJF99_04905 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_04910 PF05728 Uncharacterised protein family (UPF0227) LJF99_04915 PF08439 Oligopeptidase F LJF99_04915 PF01432 Peptidase family M3 LJF99_04925 PF05661 Protein of unknown function (DUF808) LJF99_04935 PF02769 AIR synthase related protein, C-terminal domain LJF99_04935 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LJF99_04935 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LJF99_04940 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_04940 PF01464 Transglycosylase SLT domain LJF99_04950 PF07191 zinc-ribbons LJF99_04955 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LJF99_04955 PF01926 50S ribosome-binding GTPase LJF99_04960 PF13360 PQQ-like domain LJF99_04965 PF09976 Tetratricopeptide repeat-like domain LJF99_04970 PF03129 Anticodon binding domain LJF99_04970 PF13393 Histidyl-tRNA synthetase LJF99_04975 PF04551 GcpE protein LJF99_04980 PF13464 Domain of unknown function (DUF4115) LJF99_04990 PF04055 Radical SAM superfamily LJF99_04995 PF00334 Nucleoside diphosphate kinase LJF99_05000 PF12404 Peptidase LJF99_05000 PF00883 Cytosol aminopeptidase family, catalytic domain LJF99_05005 PF00883 Cytosol aminopeptidase family, catalytic domain LJF99_05005 PF12404 Peptidase LJF99_05010 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_05015 PF00012 Hsp70 protein LJF99_05020 PF00226 DnaJ domain LJF99_05020 PF07743 HSCB C-terminal oligomerisation domain LJF99_05025 PF01521 Iron-sulphur cluster biosynthesis LJF99_05030 PF01592 NifU-like N terminal domain LJF99_05035 PF00266 Aminotransferase class-V LJF99_05040 PF02082 Transcriptional regulator LJF99_05045 PF00588 SpoU rRNA Methylase family LJF99_05055 PF02036 SCP-2 sterol transfer family LJF99_05060 PF01136 Peptidase family U32 LJF99_05065 PF01136 Peptidase family U32 LJF99_05070 PF07719 Tetratricopeptide repeat LJF99_05070 PF13181 Tetratricopeptide repeat LJF99_05075 PF00581 Rhodanese-like domain LJF99_05080 PF07549 SecD/SecF GG Motif LJF99_05080 PF02355 Protein export membrane protein LJF99_05085 PF07549 SecD/SecF GG Motif LJF99_05085 PF13721 SecD export protein N-terminal TM region LJF99_05085 PF02355 Protein export membrane protein LJF99_05090 PF02699 Preprotein translocase subunit LJF99_05095 PF01702 Queuine tRNA-ribosyltransferase LJF99_05100 PF02547 Queuosine biosynthesis protein LJF99_05105 PF00571 CBS domain LJF99_05110 PF00578 AhpC/TSA family LJF99_05110 PF10417 C-terminal domain of 1-Cys peroxiredoxin LJF99_05115 PF13192 Thioredoxin domain LJF99_05115 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_05120 PF07690 Major Facilitator Superfamily LJF99_05130 PF02347 Glycine cleavage system P-protein LJF99_05135 PF01597 Glycine cleavage H-protein LJF99_05140 PF01571 Aminomethyltransferase folate-binding domain LJF99_05140 PF08669 Glycine cleavage T-protein C-terminal barrel domain LJF99_05145 PF01494 FAD binding domain LJF99_05150 PF01494 FAD binding domain LJF99_05155 PF03695 Uncharacterised protein family (UPF0149) LJF99_05160 PF05164 Cell division protein ZapA LJF99_05175 PF02634 FdhD/NarQ family LJF99_05180 PF03466 LysR substrate binding domain LJF99_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_05185 PF07690 Major Facilitator Superfamily LJF99_05190 PF00005 ABC transporter LJF99_05195 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05195 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_05200 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05210 PF00043 Glutathione S-transferase, C-terminal domain LJF99_05210 PF02798 Glutathione S-transferase, N-terminal domain LJF99_05220 PF00459 Inositol monophosphatase family LJF99_05225 PF00672 HAMP domain LJF99_05225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_05230 PF02535 ZIP Zinc transporter LJF99_05240 PF01048 Phosphorylase superfamily LJF99_05250 PF01497 Periplasmic binding protein LJF99_05270 PF02561 Flagellar protein FliS LJF99_05275 PF07196 Flagellin hook IN motif LJF99_05275 PF02465 Flagellar hook-associated protein 2 N-terminus LJF99_05275 PF07195 Flagellar hook-associated protein 2 C-terminus LJF99_05285 PF00669 Bacterial flagellin N-terminal helical region LJF99_05285 PF00700 Bacterial flagellin C-terminal helical region LJF99_05290 PF00700 Bacterial flagellin C-terminal helical region LJF99_05290 PF07196 Flagellin hook IN motif LJF99_05290 PF00669 Bacterial flagellin N-terminal helical region LJF99_05295 PF03458 UPF0126 domain LJF99_05305 PF02926 THUMP domain LJF99_05305 PF02568 Thiamine biosynthesis protein (ThiI) LJF99_05475 PF05772 NinB protein LJF99_05505 PF00145 C-5 cytosine-specific DNA methylase LJF99_05580 PF12684 PDDEXK-like domain of unknown function (DUF3799) LJF99_05580 PF06630 Enterobacterial exodeoxyribonuclease VIII LJF99_05615 PF04381 Putative exonuclease, RdgC LJF99_05665 PF12167 Arm DNA-binding domain LJF99_05665 PF00589 Phage integrase family LJF99_05675 PF00912 Transglycosylase LJF99_05675 PF00905 Penicillin binding protein transpeptidase domain LJF99_05675 PF06832 Penicillin-Binding Protein C-terminus Family LJF99_05680 PF07678 A-macroglobulin TED domain LJF99_05680 PF00207 Alpha-2-macroglobulin family LJF99_05680 PF07703 Alpha-2-macroglobulin bait region domain LJF99_05680 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LJF99_05680 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LJF99_05680 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LJF99_05680 PF17962 Bacterial macroglobulin domain 6 LJF99_05680 PF01835 MG2 domain LJF99_05680 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LJF99_05690 PF00563 EAL domain LJF99_05690 PF03707 Bacterial signalling protein N terminal repeat LJF99_05690 PF00990 Diguanylate cyclase, GGDEF domain LJF99_05695 PF04055 Radical SAM superfamily LJF99_05710 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05715 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05720 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_05725 PF00005 ABC transporter LJF99_05730 PF03956 Lysine exporter LysO LJF99_05735 PF04336 Acyl carrier protein phosphodiesterase LJF99_05745 PF03960 ArsC family LJF99_05755 PF01435 Peptidase family M48 LJF99_05755 PF07720 Tetratricopeptide repeat LJF99_05760 PF01206 Sulfurtransferase TusA LJF99_05765 PF01594 AI-2E family transporter LJF99_05770 PF00561 alpha/beta hydrolase fold LJF99_05775 PF03976 Polyphosphate kinase 2 (PPK2) LJF99_05780 PF00005 ABC transporter LJF99_05780 PF08402 TOBE domain LJF99_05785 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05790 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_05790 PF14785 Maltose transport system permease protein MalF P2 domain LJF99_05795 PF01547 Bacterial extracellular solute-binding protein LJF99_05800 PF04245 37-kD nucleoid-associated bacterial protein LJF99_05805 PF07208 Protein of unknown function (DUF1414) LJF99_05810 PF11893 Domain of unknown function (DUF3413) LJF99_05810 PF00884 Sulfatase LJF99_05815 PF00593 TonB dependent receptor LJF99_05815 PF07715 TonB-dependent Receptor Plug Domain LJF99_05820 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJF99_05820 PF00326 Prolyl oligopeptidase family LJF99_05840 PF03974 Ecotin LJF99_05845 PF04219 Protein of unknown function, DUF LJF99_05850 PF03466 LysR substrate binding domain LJF99_05850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_05855 PF02153 Prephenate dehydrogenase LJF99_05855 PF01817 Chorismate mutase type II LJF99_05860 PF00793 DAHP synthetase I family LJF99_05865 PF03009 Glycerophosphoryl diester phosphodiesterase family LJF99_05870 PF01266 FAD dependent oxidoreductase LJF99_05870 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LJF99_05880 PF00455 DeoR C terminal sensor domain LJF99_05880 PF08220 DeoR-like helix-turn-helix domain LJF99_05885 PF07690 Major Facilitator Superfamily LJF99_05890 PF00230 Major intrinsic protein LJF99_05895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LJF99_05895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LJF99_05900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_05900 PF03466 LysR substrate binding domain LJF99_05930 PF03992 Antibiotic biosynthesis monooxygenase LJF99_05935 PF00248 Aldo/keto reductase family LJF99_05940 PF07690 Major Facilitator Superfamily LJF99_05950 PF02322 Cytochrome bd terminal oxidase subunit II LJF99_05955 PF01654 Cytochrome bd terminal oxidase subunit I LJF99_05960 PF00155 Aminotransferase class I and II LJF99_05960 PF00392 Bacterial regulatory proteins, gntR family LJF99_05965 PF04391 Protein of unknown function (DUF533) LJF99_05975 PF10689 Protein of unknown function (DUF2496) LJF99_05985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_05985 PF03466 LysR substrate binding domain LJF99_05995 PF07690 Major Facilitator Superfamily LJF99_06000 PF01479 S4 domain LJF99_06000 PF00849 RNA pseudouridylate synthase LJF99_06005 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LJF99_06005 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LJF99_06015 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_06025 PF00271 Helicase conserved C-terminal domain LJF99_06025 PF04851 Type III restriction enzyme, res subunit LJF99_06030 PF00300 Histidine phosphatase superfamily (branch 1) LJF99_06045 PF17810 Arginine decarboxylase helical bundle domain LJF99_06045 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJF99_06045 PF17944 Arginine decarboxylase C-terminal helical extension LJF99_06050 PF01546 Peptidase family M20/M25/M40 LJF99_06050 PF07687 Peptidase dimerisation domain LJF99_06075 PF04264 YceI-like domain LJF99_06080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_06080 PF03466 LysR substrate binding domain LJF99_06090 PF01268 Formate--tetrahydrofolate ligase LJF99_06095 PF00672 HAMP domain LJF99_06095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_06095 PF17200 Single Cache domain 2 LJF99_06100 PF01227 GTP cyclohydrolase I LJF99_06105 PF00994 Probable molybdopterin binding domain LJF99_06105 PF03453 MoeA N-terminal region (domain I and II) LJF99_06105 PF03454 MoeA C-terminal region (domain IV) LJF99_06110 PF00899 ThiF family LJF99_06115 PF06291 Bor protein LJF99_06120 PF06291 Bor protein LJF99_06130 PF06406 StbA protein LJF99_06135 PF00561 alpha/beta hydrolase fold LJF99_06140 PF00005 ABC transporter LJF99_06140 PF03459 TOBE domain LJF99_06145 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_06155 PF02391 MoaE protein LJF99_06160 PF02597 ThiS family LJF99_06165 PF01967 MoaC family LJF99_06170 PF00994 Probable molybdopterin binding domain LJF99_06175 PF03264 NapC/NirT cytochrome c family, N-terminal region LJF99_06180 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LJF99_06185 PF12801 4Fe-4S binding domain LJF99_06185 PF13237 4Fe-4S dicluster domain LJF99_06190 PF12838 4Fe-4S dicluster domain LJF99_06190 PF12800 4Fe-4S binding domain LJF99_06195 PF10518 TAT (twin-arginine translocation) pathway signal sequence LJF99_06195 PF01568 Molydopterin dinucleotide binding domain LJF99_06195 PF00384 Molybdopterin oxidoreductase LJF99_06195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LJF99_06205 PF13187 4Fe-4S dicluster domain LJF99_06205 PF12838 4Fe-4S dicluster domain LJF99_06210 PF06463 Molybdenum Cofactor Synthesis C LJF99_06210 PF04055 Radical SAM superfamily LJF99_06215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_06215 PF00672 HAMP domain LJF99_06215 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LJF99_06215 PF07730 Histidine kinase LJF99_06220 PF00196 Bacterial regulatory proteins, luxR family LJF99_06220 PF00072 Response regulator receiver domain LJF99_06230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_06230 PF00512 His Kinase A (phospho-acceptor) domain LJF99_06230 PF09456 RcsC Alpha-Beta-Loop (ABL) LJF99_06230 PF00072 Response regulator receiver domain LJF99_06240 PF01933 Uncharacterised protein family UPF0052 LJF99_06250 PF13230 Glutamine amidotransferases class-II LJF99_06255 PF13580 SIS domain LJF99_06260 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJF99_06260 PF02770 Acyl-CoA dehydrogenase, middle domain LJF99_06260 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJF99_06260 PF09317 Domain of unknown function (DUF1974) LJF99_06265 PF11849 Domain of unknown function (DUF3369) LJF99_06275 PF00929 Exonuclease LJF99_06280 PF00075 RNase H LJF99_06285 PF08241 Methyltransferase domain LJF99_06290 PF16123 Hydroxyacylglutathione hydrolase C-terminus LJF99_06290 PF00753 Metallo-beta-lactamase superfamily LJF99_06295 PF01476 LysM domain LJF99_06295 PF01464 Transglycosylase SLT domain LJF99_06300 PF03372 Endonuclease/Exonuclease/phosphatase family LJF99_06305 PF03061 Thioesterase superfamily LJF99_06315 PF00356 Bacterial regulatory proteins, lacI family LJF99_06320 PF01464 Transglycosylase SLT domain LJF99_06320 PF14718 Soluble lytic murein transglycosylase L domain LJF99_06325 PF00990 Diguanylate cyclase, GGDEF domain LJF99_06325 PF00563 EAL domain LJF99_06325 PF03707 Bacterial signalling protein N terminal repeat LJF99_06330 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LJF99_06345 PF04357 TamB, inner membrane protein subunit of TAM complex LJF99_06350 PF17243 POTRA domain TamA domain 1 LJF99_06350 PF01103 Surface antigen LJF99_06350 PF07244 Surface antigen variable number repeat LJF99_06370 PF01625 Peptide methionine sulfoxide reductase LJF99_06380 PF02627 Carboxymuconolactone decarboxylase family LJF99_06385 PF00403 Heavy-metal-associated domain LJF99_06385 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_06385 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJF99_06390 PF13416 Bacterial extracellular solute-binding protein LJF99_06395 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_06400 PF00005 ABC transporter LJF99_06405 PF01066 CDP-alcohol phosphatidyltransferase LJF99_06410 PF13406 Transglycosylase SLT domain LJF99_06415 PF01047 MarR family LJF99_06425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJF99_06425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJF99_06425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJF99_06425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJF99_06430 PF03925 SeqA protein C-terminal domain LJF99_06430 PF17206 SeqA protein N-terminal domain LJF99_06435 PF12697 Alpha/beta hydrolase family LJF99_06445 PF01402 Ribbon-helix-helix protein, copG family LJF99_06450 PF00258 Flavodoxin LJF99_06460 PF01475 Ferric uptake regulator family LJF99_06465 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJF99_06465 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LJF99_06470 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LJF99_06470 PF00728 Glycosyl hydrolase family 20, catalytic domain LJF99_06470 PF02838 Glycosyl hydrolase family 20, domain 2 LJF99_06470 PF03173 Putative carbohydrate binding domain LJF99_06475 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LJF99_06475 PF00367 phosphotransferase system, EIIB LJF99_06475 PF02378 Phosphotransferase system, EIIC LJF99_06480 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LJF99_06485 PF01979 Amidohydrolase family LJF99_06490 PF00480 ROK family LJF99_06490 PF01047 MarR family LJF99_06510 PF17837 4'-phosphopantetheinyl transferase N-terminal domain LJF99_06510 PF01648 4'-phosphopantetheinyl transferase superfamily LJF99_06520 PF00534 Glycosyl transferases group 1 LJF99_06520 PF13439 Glycosyltransferase Family 4 LJF99_06535 PF14765 Polyketide synthase dehydratase LJF99_06535 PF08659 KR domain LJF99_06535 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_06535 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_06535 PF16197 Ketoacyl-synthetase C-terminal extension LJF99_06535 PF08240 Alcohol dehydrogenase GroES-like domain LJF99_06535 PF00698 Acyl transferase domain LJF99_06535 PF00550 Phosphopantetheine attachment site LJF99_06545 PF00698 Acyl transferase domain LJF99_06545 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_06545 PF00550 Phosphopantetheine attachment site LJF99_06545 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_06545 PF16197 Ketoacyl-synthetase C-terminal extension LJF99_06545 PF00668 Condensation domain LJF99_06560 PF01695 IstB-like ATP binding protein LJF99_06565 PF00665 Integrase core domain LJF99_06575 PF00501 AMP-binding enzyme LJF99_06575 PF13193 AMP-binding enzyme C-terminal domain LJF99_06575 PF00668 Condensation domain LJF99_06575 PF00550 Phosphopantetheine attachment site LJF99_06575 PF00975 Thioesterase domain LJF99_06585 PF03173 Putative carbohydrate binding domain LJF99_06585 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LJF99_06585 PF00728 Glycosyl hydrolase family 20, catalytic domain LJF99_06585 PF02838 Glycosyl hydrolase family 20, domain 2 LJF99_06590 PF08019 Phosphoethanolamine transferase EptA/EptB LJF99_06590 PF00884 Sulfatase LJF99_06595 PF01709 Transcriptional regulator LJF99_06600 PF00152 tRNA synthetases class II (D, K and N) LJF99_06600 PF01336 OB-fold nucleic acid binding domain LJF99_06600 PF02938 GAD domain LJF99_06610 PF13649 Methyltransferase domain LJF99_06615 PF08003 Protein of unknown function (DUF1698) LJF99_06635 PF10417 C-terminal domain of 1-Cys peroxiredoxin LJF99_06635 PF00578 AhpC/TSA family LJF99_06640 PF13592 Winged helix-turn helix LJF99_06640 PF13358 DDE superfamily endonuclease LJF99_06645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_06645 PF03466 LysR substrate binding domain LJF99_06650 PF07968 Leukocidin/Hemolysin toxin family LJF99_06650 PF12563 Hemolytic toxin N terminal LJF99_06655 PF00877 NlpC/P60 family LJF99_06665 PF00171 Aldehyde dehydrogenase family LJF99_06670 PF17932 Tetracyclin repressor-like, C-terminal domain LJF99_06670 PF00440 Bacterial regulatory proteins, tetR family LJF99_06680 PF00465 Iron-containing alcohol dehydrogenase LJF99_06690 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_06705 PF00916 Sulfate permease family LJF99_06705 PF01740 STAS domain LJF99_06710 PF01554 MatE LJF99_06720 PF04325 Protein of unknown function (DUF465) LJF99_06735 PF03473 MOSC domain LJF99_06735 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_06735 PF03473 MOSC domain LJF99_06735 PF03476 MOSC N-terminal beta barrel domain LJF99_06735 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_06735 PF03476 MOSC N-terminal beta barrel domain LJF99_06740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_06740 PF08447 PAS fold LJF99_06740 PF13426 PAS domain LJF99_06745 PF01435 Peptidase family M48 LJF99_06755 PF12697 Alpha/beta hydrolase family LJF99_06755 PF08241 Methyltransferase domain LJF99_06760 PF00155 Aminotransferase class I and II LJF99_06765 PF06968 Biotin and Thiamin Synthesis associated domain LJF99_06765 PF04055 Radical SAM superfamily LJF99_06770 PF00202 Aminotransferase class-III LJF99_06785 PF00152 tRNA synthetases class II (D, K and N) LJF99_06785 PF01336 OB-fold nucleic acid binding domain LJF99_06790 PF03605 Anaerobic c4-dicarboxylate membrane transporter LJF99_06805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_06805 PF03466 LysR substrate binding domain LJF99_06810 PF03960 ArsC family LJF99_06815 PF07687 Peptidase dimerisation domain LJF99_06815 PF01546 Peptidase family M20/M25/M40 LJF99_06820 PF02557 D-alanyl-D-alanine carboxypeptidase LJF99_06830 PF00999 Sodium/hydrogen exchanger family LJF99_06830 PF03471 Transporter associated domain LJF99_06830 PF02080 TrkA-C domain LJF99_06840 PF02080 TrkA-C domain LJF99_06840 PF00999 Sodium/hydrogen exchanger family LJF99_06840 PF03471 Transporter associated domain LJF99_06850 PF01810 LysE type translocator LJF99_06855 PF12729 Four helix bundle sensory module for signal transduction LJF99_06855 PF00672 HAMP domain LJF99_06855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_06860 PF07509 Protein of unknown function (DUF1523) LJF99_06875 PF01156 Inosine-uridine preferring nucleoside hydrolase LJF99_06880 PF00849 RNA pseudouridylate synthase LJF99_06885 PF01048 Phosphorylase superfamily LJF99_06890 PF00465 Iron-containing alcohol dehydrogenase LJF99_06925 PF00437 Type II/IV secretion system protein LJF99_06930 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LJF99_06940 PF04972 BON domain LJF99_06940 PF00263 Bacterial type II and III secretion system protein LJF99_06940 PF13629 Pilus formation protein N terminal region LJF99_06975 PF04355 SmpA / OmlA family LJF99_06980 PF13460 NAD(P)H-binding LJF99_06985 PF03658 RnfH family Ubiquitin LJF99_06990 PF03364 Polyketide cyclase / dehydrase and lipid transport LJF99_06995 PF01668 SmpB protein LJF99_07070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_07070 PF03466 LysR substrate binding domain LJF99_07075 PF02447 GntP family permease LJF99_07080 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_07090 PF00180 Isocitrate/isopropylmalate dehydrogenase LJF99_07095 PF12833 Helix-turn-helix domain LJF99_07100 PF01238 Phosphomannose isomerase type I LJF99_07125 PF00155 Aminotransferase class I and II LJF99_07130 PF00367 phosphotransferase system, EIIB LJF99_07130 PF02378 Phosphotransferase system, EIIC LJF99_07135 PF00356 Bacterial regulatory proteins, lacI family LJF99_07135 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJF99_07150 PF00561 alpha/beta hydrolase fold LJF99_07155 PF07690 Major Facilitator Superfamily LJF99_07160 PF01040 UbiA prenyltransferase family LJF99_07165 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LJF99_07170 PF00510 Cytochrome c oxidase subunit III LJF99_07175 PF00115 Cytochrome C and Quinol oxidase polypeptide I LJF99_07180 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LJF99_07180 PF06481 COX Aromatic Rich Motif LJF99_07190 PF00034 Cytochrome c LJF99_07190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LJF99_07200 PF01156 Inosine-uridine preferring nucleoside hydrolase LJF99_07215 PF00127 Copper binding proteins, plastocyanin/azurin family LJF99_07220 PF02424 ApbE family LJF99_07235 PF03372 Endonuclease/Exonuclease/phosphatase family LJF99_07240 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_07245 PF00873 AcrB/AcrD/AcrF family LJF99_07260 PF00529 HlyD membrane-fusion protein of T1SS LJF99_07260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_07265 PF00873 AcrB/AcrD/AcrF family LJF99_07275 PF03099 Biotin/lipoate A/B protein ligase family LJF99_07275 PF10437 Bacterial lipoate protein ligase C-terminus LJF99_07280 PF03707 Bacterial signalling protein N terminal repeat LJF99_07280 PF00990 Diguanylate cyclase, GGDEF domain LJF99_07280 PF00563 EAL domain LJF99_07285 PF00873 AcrB/AcrD/AcrF family LJF99_07300 PF04143 Sulphur transport LJF99_07320 PF02308 MgtC family LJF99_07325 PF00356 Bacterial regulatory proteins, lacI family LJF99_07325 PF13407 Periplasmic binding protein domain LJF99_07335 PF00367 phosphotransferase system, EIIB LJF99_07335 PF02378 Phosphotransferase system, EIIC LJF99_07340 PF00294 pfkB family carbohydrate kinase LJF99_07345 PF02264 LamB porin LJF99_07345 PF11471 Maltoporin periplasmic N-terminal extension LJF99_07350 PF00684 DnaJ central domain LJF99_07350 PF00226 DnaJ domain LJF99_07350 PF01556 DnaJ C terminal domain LJF99_07355 PF00012 Hsp70 protein LJF99_07360 PF01025 GrpE LJF99_07365 PF01513 ATP-NAD kinase LJF99_07370 PF02463 RecF/RecN/SMC N terminal domain LJF99_07375 PF01368 DHH family LJF99_07375 PF02833 DHHA2 domain LJF99_07385 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_07390 PF00005 ABC transporter LJF99_07390 PF02687 FtsX-like permease family LJF99_07390 PF12704 MacB-like periplasmic core domain LJF99_07395 PF02321 Outer membrane efflux protein LJF99_07400 PF08021 Siderophore-interacting FAD-binding domain LJF99_07400 PF04954 Siderophore-interacting protein LJF99_07405 PF00793 DAHP synthetase I family LJF99_07410 PF00872 Transposase, Mutator family LJF99_07415 PF00816 H-NS histone family LJF99_07440 PF12833 Helix-turn-helix domain LJF99_07440 PF07883 Cupin domain LJF99_07450 PF01266 FAD dependent oxidoreductase LJF99_07455 PF07883 Cupin domain LJF99_07455 PF01381 Helix-turn-helix LJF99_07460 PF00171 Aldehyde dehydrogenase family LJF99_07465 PF00202 Aminotransferase class-III LJF99_07470 PF00324 Amino acid permease LJF99_07475 PF00324 Amino acid permease LJF99_07480 PF02690 Na+/Pi-cotransporter LJF99_07485 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_07485 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJF99_07490 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LJF99_07505 PF01048 Phosphorylase superfamily LJF99_07525 PF01797 Transposase IS200 like LJF99_07535 PF13592 Winged helix-turn helix LJF99_07535 PF13358 DDE superfamily endonuclease LJF99_07550 PF13592 Winged helix-turn helix LJF99_07550 PF13358 DDE superfamily endonuclease LJF99_07555 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_07555 PF14821 Threonine synthase N terminus LJF99_07560 PF08544 GHMP kinases C terminal LJF99_07560 PF00288 GHMP kinases N terminal domain LJF99_07565 PF00696 Amino acid kinase family LJF99_07565 PF01842 ACT domain LJF99_07565 PF13840 ACT domain LJF99_07565 PF00742 Homoserine dehydrogenase LJF99_07565 PF03447 Homoserine dehydrogenase, NAD binding domain LJF99_07570 PF00588 SpoU rRNA Methylase family LJF99_07575 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LJF99_07590 PF03737 Aldolase/RraA LJF99_07600 PF00072 Response regulator receiver domain LJF99_07600 PF00486 Transcriptional regulatory protein, C terminal LJF99_07615 PF00664 ABC transporter transmembrane region LJF99_07615 PF00005 ABC transporter LJF99_07620 PF00664 ABC transporter transmembrane region LJF99_07620 PF00005 ABC transporter LJF99_07640 PF01980 tRNA-methyltransferase O LJF99_07640 PF18389 TrmO C-terminal domain LJF99_07645 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJF99_07645 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJF99_07660 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_07665 PF00381 PTS HPr component phosphorylation site LJF99_07670 PF00391 PEP-utilising enzyme, mobile domain LJF99_07670 PF02896 PEP-utilising enzyme, TIM barrel domain LJF99_07670 PF05524 PEP-utilising enzyme, N-terminal LJF99_07675 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LJF99_07680 PF00990 Diguanylate cyclase, GGDEF domain LJF99_07690 PF01292 Prokaryotic cytochrome b561 LJF99_07700 PF13476 AAA domain LJF99_07705 PF00149 Calcineurin-like phosphoesterase LJF99_07705 PF12320 Type 5 capsule protein repressor C-terminal domain LJF99_07715 PF04381 Putative exonuclease, RdgC LJF99_07730 PF04389 Peptidase family M28 LJF99_07730 PF04151 Bacterial pre-peptidase C-terminal domain LJF99_07740 PF02887 Pyruvate kinase, alpha/beta domain LJF99_07740 PF00224 Pyruvate kinase, barrel domain LJF99_07745 PF00924 Mechanosensitive ion channel LJF99_07745 PF12795 Mechanosensitive ion channel porin domain LJF99_07745 PF12794 Mechanosensitive ion channel inner membrane domain 1 LJF99_07770 PF13358 DDE superfamily endonuclease LJF99_07770 PF13592 Winged helix-turn helix LJF99_07780 PF02634 FdhD/NarQ family LJF99_07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_07790 PF00512 His Kinase A (phospho-acceptor) domain LJF99_07790 PF00989 PAS fold LJF99_07800 PF12849 PBP superfamily domain LJF99_07805 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_07810 PF00005 ABC transporter LJF99_07815 PF12804 MobA-like NTP transferase domain LJF99_07820 PF03453 MoeA N-terminal region (domain I and II) LJF99_07820 PF03454 MoeA C-terminal region (domain IV) LJF99_07820 PF00994 Probable molybdopterin binding domain LJF99_07825 PF04632 Fusaric acid resistance protein family LJF99_07835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_07835 PF13426 PAS domain LJF99_07835 PF08447 PAS fold LJF99_07845 PF10725 Protein of unknown function (DUF2517) LJF99_07865 PF09308 LuxQ, periplasmic LJF99_07865 PF00512 His Kinase A (phospho-acceptor) domain LJF99_07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_07865 PF00072 Response regulator receiver domain LJF99_07870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_07875 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_07880 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_07880 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_07885 PF00005 ABC transporter LJF99_07885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_07890 PF00005 ABC transporter LJF99_07890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_07900 PF01869 BadF/BadG/BcrA/BcrD ATPase family LJF99_07905 PF02838 Glycosyl hydrolase family 20, domain 2 LJF99_07905 PF00728 Glycosyl hydrolase family 20, catalytic domain LJF99_07910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_07910 PF08447 PAS fold LJF99_07925 PF08272 Topoisomerase I zinc-ribbon-like LJF99_07925 PF01131 DNA topoisomerase LJF99_07925 PF01396 Topoisomerase DNA binding C4 zinc finger LJF99_07925 PF01751 Toprim domain LJF99_07930 PF04996 Succinylarginine dihydrolase LJF99_07935 PF01343 Peptidase family S49 LJF99_07935 PF08496 Peptidase family S49 N-terminal LJF99_07940 PF00106 short chain dehydrogenase LJF99_07945 PF03466 LysR substrate binding domain LJF99_07945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_07950 PF07690 Major Facilitator Superfamily LJF99_07955 PF00155 Aminotransferase class I and II LJF99_07965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_07965 PF03466 LysR substrate binding domain LJF99_07970 PF00709 Adenylosuccinate synthetase LJF99_07975 PF01161 Phosphatidylethanolamine-binding protein LJF99_07985 PF00128 Alpha amylase, catalytic domain LJF99_07995 PF00196 Bacterial regulatory proteins, luxR family LJF99_07995 PF00072 Response regulator receiver domain LJF99_08030 PF00990 Diguanylate cyclase, GGDEF domain LJF99_08035 PF11734 TilS substrate C-terminal domain LJF99_08035 PF09179 TilS substrate binding domain LJF99_08035 PF01171 PP-loop family LJF99_08040 PF05649 Peptidase family M13 LJF99_08040 PF01431 Peptidase family M13 LJF99_08050 PF12848 ABC transporter LJF99_08050 PF00005 ABC transporter LJF99_08050 PF16326 ABC transporter C-terminal domain LJF99_08055 PF13302 Acetyltransferase (GNAT) domain LJF99_08060 PF13520 Amino acid permease LJF99_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_08070 PF03466 LysR substrate binding domain LJF99_08080 PF08543 Phosphomethylpyrimidine kinase LJF99_08085 PF01276 Orn/Lys/Arg decarboxylase, major domain LJF99_08085 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LJF99_08085 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LJF99_08090 PF13520 Amino acid permease LJF99_08095 PF00486 Transcriptional regulatory protein, C terminal LJF99_08095 PF18500 CadC C-terminal domain 1 LJF99_08100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LJF99_08105 PF14579 Helix-hairpin-helix motif LJF99_08105 PF02811 PHP domain LJF99_08105 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LJF99_08105 PF07733 Bacterial DNA polymerase III alpha NTPase domain LJF99_08105 PF01336 OB-fold nucleic acid binding domain LJF99_08110 PF01351 Ribonuclease HII LJF99_08115 PF02684 Lipid-A-disaccharide synthetase LJF99_08120 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_08120 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LJF99_08125 PF07977 FabA-like domain LJF99_08130 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LJF99_08130 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_08135 PF03938 Outer membrane protein (OmpH-like) LJF99_08140 PF01103 Surface antigen LJF99_08140 PF07244 Surface antigen variable number repeat LJF99_08145 PF02163 Peptidase family M50 LJF99_08145 PF17820 PDZ domain LJF99_08150 PF13288 DXP reductoisomerase C-terminal domain LJF99_08150 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LJF99_08150 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LJF99_08160 PF01255 Putative undecaprenyl diphosphate synthase LJF99_08165 PF01765 Ribosome recycling factor LJF99_08170 PF00696 Amino acid kinase family LJF99_08175 PF00889 Elongation factor TS LJF99_08180 PF00318 Ribosomal protein S2 LJF99_08185 PF00557 Metallopeptidase family M24 LJF99_08195 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_08195 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LJF99_08195 PF14602 Hexapeptide repeat of succinyl-transferase LJF99_08200 PF11944 Protein of unknown function (DUF3461) LJF99_08205 PF02378 Phosphotransferase system, EIIC LJF99_08205 PF00367 phosphotransferase system, EIIB LJF99_08210 PF07148 Maltose operon periplasmic protein precursor (MalM) LJF99_08225 PF02264 LamB porin LJF99_08230 PF00258 Flavodoxin LJF99_08235 PF00849 RNA pseudouridylate synthase LJF99_08240 PF04287 tRNA pseudouridine synthase C LJF99_08265 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LJF99_08270 PF07348 Syd protein (SUKH-2) LJF99_08275 PF14489 QueF-like protein LJF99_08275 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LJF99_08285 PF00990 Diguanylate cyclase, GGDEF domain LJF99_08290 PF11892 Domain of unknown function (DUF3412) LJF99_08290 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LJF99_08290 PF03641 Possible lysine decarboxylase LJF99_08295 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LJF99_08295 PF01367 5'-3' exonuclease, C-terminal SAM fold LJF99_08300 PF00180 Isocitrate/isopropylmalate dehydrogenase LJF99_08300 PF18324 Hypothetical protein TT1725 LJF99_08310 PF01728 FtsJ-like methyltransferase LJF99_08310 PF18125 RlmM ferredoxin-like domain LJF99_08315 PF04241 Protein of unknown function (DUF423) LJF99_08325 PF03466 LysR substrate binding domain LJF99_08325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_08330 PF00672 HAMP domain LJF99_08330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_08335 PF00817 impB/mucB/samB family LJF99_08335 PF11798 IMS family HHH motif LJF99_08335 PF11799 impB/mucB/samB family C-terminal domain LJF99_08350 PF02424 ApbE family LJF99_08355 PF00175 Oxidoreductase NAD-binding domain LJF99_08355 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_08355 PF00970 Oxidoreductase FAD-binding domain LJF99_08360 PF02508 Rnf-Nqr subunit, membrane protein LJF99_08365 PF02508 Rnf-Nqr subunit, membrane protein LJF99_08370 PF04205 FMN-binding domain LJF99_08375 PF03116 NQR2, RnfD, RnfE family LJF99_08380 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LJF99_08380 PF11973 NQRA C-terminal domain LJF99_08390 PF01722 BolA-like protein LJF99_08395 PF05175 Methyltransferase small domain LJF99_08405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LJF99_08415 PF07690 Major Facilitator Superfamily LJF99_08420 PF03502 Nucleoside-specific channel-forming protein, Tsx LJF99_08425 PF04461 Protein of unknown function (DUF520) LJF99_08430 PF02558 Ketopantoate reductase PanE/ApbA LJF99_08430 PF08546 Ketopantoate reductase PanE/ApbA C terminal LJF99_08435 PF01965 DJ-1/PfpI family LJF99_08445 PF03306 Alpha-acetolactate decarboxylase LJF99_08450 PF03466 LysR substrate binding domain LJF99_08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_08455 PF10091 Putative glucoamylase LJF99_08455 PF06165 Glycosyltransferase family 36 LJF99_08455 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain LJF99_08465 PF06965 Na+/H+ antiporter 1 LJF99_08465 PF13462 Thioredoxin LJF99_08470 PF16363 GDP-mannose 4,6 dehydratase LJF99_08475 PF00175 Oxidoreductase NAD-binding domain LJF99_08475 PF00970 Oxidoreductase FAD-binding domain LJF99_08475 PF00111 2Fe-2S iron-sulfur cluster binding domain LJF99_08480 PF03063 Prismane/CO dehydrogenase family LJF99_08485 PF00210 Ferritin-like domain LJF99_08525 PF00106 short chain dehydrogenase LJF99_08535 PF03441 FAD binding domain of DNA photolyase LJF99_08535 PF00875 DNA photolyase LJF99_08540 PF13411 MerR HTH family regulatory protein LJF99_08545 PF08349 Protein of unknown function (DUF1722) LJF99_08575 PF01817 Chorismate mutase type II LJF99_08575 PF00800 Prephenate dehydratase LJF99_08600 PF07995 Glucose / Sorbosone dehydrogenase LJF99_08610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_08620 PF00106 short chain dehydrogenase LJF99_08645 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LJF99_08655 PF12833 Helix-turn-helix domain LJF99_08655 PF00730 HhH-GPD superfamily base excision DNA repair protein LJF99_08655 PF06029 AlkA N-terminal domain LJF99_08655 PF02805 Metal binding domain of Ada LJF99_08660 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LJF99_08660 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LJF99_08670 PF01209 ubiE/COQ5 methyltransferase family LJF99_08675 PF06906 Protein of unknown function (DUF1272) LJF99_08690 PF01810 LysE type translocator LJF99_08695 PF03466 LysR substrate binding domain LJF99_08695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_08700 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LJF99_08700 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LJF99_08710 PF00072 Response regulator receiver domain LJF99_08720 PF01627 Hpt domain LJF99_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_08720 PF02895 Signal transducing histidine kinase, homodimeric domain LJF99_08720 PF01584 CheW-like domain LJF99_08725 PF12729 Four helix bundle sensory module for signal transduction LJF99_08725 PF00672 HAMP domain LJF99_08725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_08730 PF01584 CheW-like domain LJF99_08735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_08735 PF00672 HAMP domain LJF99_08735 PF02203 Tar ligand binding domain homologue LJF99_08740 PF01739 CheR methyltransferase, SAM binding domain LJF99_08740 PF03705 CheR methyltransferase, all-alpha domain LJF99_08745 PF03975 CheD chemotactic sensory transduction LJF99_08750 PF01339 CheB methylesterase LJF99_08750 PF00072 Response regulator receiver domain LJF99_08755 PF00266 Aminotransferase class-V LJF99_08780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJF99_08780 PF00072 Response regulator receiver domain LJF99_08780 PF00672 HAMP domain LJF99_08780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_08780 PF00512 His Kinase A (phospho-acceptor) domain LJF99_08780 PF01627 Hpt domain LJF99_08785 PF00196 Bacterial regulatory proteins, luxR family LJF99_08785 PF00072 Response regulator receiver domain LJF99_08790 PF00072 Response regulator receiver domain LJF99_08790 PF00196 Bacterial regulatory proteins, luxR family LJF99_08800 PF15976 CS1-pili formation C-terminal LJF99_08800 PF16967 E-set like domain LJF99_08820 PF00989 PAS fold LJF99_08820 PF00990 Diguanylate cyclase, GGDEF domain LJF99_08820 PF01590 GAF domain LJF99_08820 PF00563 EAL domain LJF99_08825 PF16325 Peptidase family U32 C-terminal domain LJF99_08825 PF01136 Peptidase family U32 LJF99_08830 PF12838 4Fe-4S dicluster domain LJF99_08835 PF00842 Alanine racemase, C-terminal domain LJF99_08835 PF01168 Alanine racemase, N-terminal domain LJF99_08840 PF03796 DnaB-like helicase C terminal domain LJF99_08840 PF00772 DnaB-like helicase N terminal domain LJF99_08855 PF00563 EAL domain LJF99_08855 PF12792 CSS motif domain associated with EAL LJF99_08860 PF00149 Calcineurin-like phosphoesterase LJF99_08860 PF02872 5'-nucleotidase, C-terminal domain LJF99_08880 PF00072 Response regulator receiver domain LJF99_08880 PF02954 Bacterial regulatory protein, Fis family LJF99_08880 PF00158 Sigma-54 interaction domain LJF99_08885 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJF99_08885 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_08895 PF04102 SlyX LJF99_08900 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_08905 PF09526 Probable metal-binding protein (DUF2387) LJF99_08915 PF01584 CheW-like domain LJF99_08915 PF00072 Response regulator receiver domain LJF99_08920 PF00561 alpha/beta hydrolase fold LJF99_08925 PF00990 Diguanylate cyclase, GGDEF domain LJF99_08925 PF00563 EAL domain LJF99_08925 PF01590 GAF domain LJF99_08925 PF00360 Phytochrome region LJF99_08930 PF06794 Uncharacterised protein family (UPF0270) LJF99_08935 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LJF99_08935 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LJF99_08935 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LJF99_08940 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LJF99_08945 PF00535 Glycosyl transferase family 2 LJF99_08955 PF01522 Polysaccharide deacetylase LJF99_08960 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase LJF99_08965 PF00892 EamA-like transporter family LJF99_08975 PF00485 Phosphoribulokinase / Uridine kinase family LJF99_08990 PF02566 OsmC-like protein LJF99_08995 PF13545 Crp-like helix-turn-helix domain LJF99_08995 PF00027 Cyclic nucleotide-binding domain LJF99_09000 PF08241 Methyltransferase domain LJF99_09005 PF18416 N-acetylglucosamine binding protein domain 2 LJF99_09005 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LJF99_09010 PF12561 ToxR activated gene A lipoprotein domain LJF99_09010 PF17945 Beta/Gamma crystallin LJF99_09030 PF13443 Cro/C1-type HTH DNA-binding domain LJF99_09040 PF12832 MFS_1 like family LJF99_09045 PF07715 TonB-dependent Receptor Plug Domain LJF99_09045 PF00593 TonB dependent receptor LJF99_09065 PF01243 Pyridoxamine 5'-phosphate oxidase LJF99_09070 PF06228 Haem utilisation ChuX/HutX LJF99_09080 PF01032 FecCD transport family LJF99_09085 PF00005 ABC transporter LJF99_09095 PF01370 NAD dependent epimerase/dehydratase family LJF99_09105 PF01464 Transglycosylase SLT domain LJF99_09110 PF00005 ABC transporter LJF99_09110 PF12848 ABC transporter LJF99_09125 PF00226 DnaJ domain LJF99_09125 PF05099 Tellurite resistance protein TerB LJF99_09130 PF00483 Nucleotidyl transferase LJF99_09135 PF01636 Phosphotransferase enzyme family LJF99_09140 PF03968 OstA-like protein LJF99_09140 PF04453 LPS transport system D LJF99_09145 PF00639 PPIC-type PPIASE domain LJF99_09145 PF09312 SurA N-terminal domain LJF99_09150 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LJF99_09155 PF00398 Ribosomal RNA adenine dimethylase LJF99_09160 PF04379 ApaG domain LJF99_09165 PF00149 Calcineurin-like phosphoesterase LJF99_09180 PF00296 Luciferase-like monooxygenase LJF99_09200 PF00501 AMP-binding enzyme LJF99_09200 PF13193 AMP-binding enzyme C-terminal domain LJF99_09205 PF07670 Nucleoside recognition LJF99_09210 PF01018 GTP1/OBG LJF99_09210 PF01926 50S ribosome-binding GTPase LJF99_09215 PF01016 Ribosomal L27 protein LJF99_09220 PF00829 Ribosomal prokaryotic L21 protein LJF99_09225 PF00348 Polyprenyl synthetase LJF99_09230 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LJF99_09235 PF01145 SPFH domain / Band 7 family LJF99_09240 PF01145 SPFH domain / Band 7 family LJF99_09240 PF12221 Bacterial membrane protein N terminal LJF99_09245 PF16360 GTP-binding GTPase Middle Region LJF99_09245 PF13167 GTP-binding GTPase N-terminal LJF99_09245 PF01926 50S ribosome-binding GTPase LJF99_09250 PF17209 Hfq protein LJF99_09260 PF01119 DNA mismatch repair protein, C-terminal domain LJF99_09260 PF08676 MutL C terminal dimerisation domain LJF99_09265 PF01520 N-acetylmuramoyl-L-alanine amidase LJF99_09270 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LJF99_09275 PF01256 Carbohydrate kinase LJF99_09275 PF03853 YjeF-related protein N-terminus LJF99_09285 PF08331 Domain of unknown function (DUF1730) LJF99_09290 PF00480 ROK family LJF99_09300 PF00005 ABC transporter LJF99_09300 PF09383 NIL domain LJF99_09305 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_09310 PF03180 NLPA lipoprotein LJF99_09315 PF02357 Transcription termination factor nusG LJF99_09320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_09320 PF12729 Four helix bundle sensory module for signal transduction LJF99_09320 PF00672 HAMP domain LJF99_09335 PF00672 HAMP domain LJF99_09335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_09335 PF00512 His Kinase A (phospho-acceptor) domain LJF99_09335 PF01627 Hpt domain LJF99_09335 PF00072 Response regulator receiver domain LJF99_09335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJF99_09345 PF01966 HD domain LJF99_09350 PF18415 Histidine kinase receptor ArcB trans-membrane domain LJF99_09350 PF00512 His Kinase A (phospho-acceptor) domain LJF99_09350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_09350 PF00989 PAS fold LJF99_09350 PF00072 Response regulator receiver domain LJF99_09350 PF01627 Hpt domain LJF99_09375 PF03466 LysR substrate binding domain LJF99_09375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_09385 PF01259 SAICAR synthetase LJF99_09390 PF06804 NlpB/DapX lipoprotein LJF99_09395 PF00701 Dihydrodipicolinate synthetase family LJF99_09400 PF01842 ACT domain LJF99_09405 PF00578 AhpC/TSA family LJF99_09410 PF03887 YfbU domain LJF99_09415 PF04217 Protein of unknown function, DUF412 LJF99_09420 PF00871 Acetokinase family LJF99_09425 PF07085 DRTGG domain LJF99_09425 PF01515 Phosphate acetyl/butaryl transferase LJF99_09430 PF10369 Small subunit of acetolactate synthase LJF99_09435 PF00205 Thiamine pyrophosphate enzyme, central domain LJF99_09435 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJF99_09435 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJF99_09450 PF01569 PAP2 superfamily LJF99_09460 PF00682 HMGL-like LJF99_09460 PF08502 LeuA allosteric (dimerisation) domain LJF99_09465 PF00180 Isocitrate/isopropylmalate dehydrogenase LJF99_09470 PF00330 Aconitase family (aconitate hydratase) LJF99_09475 PF00694 Aconitase C-terminal domain LJF99_09495 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_09500 PF00005 ABC transporter LJF99_09505 PF13638 PIN domain LJF99_09505 PF02562 PhoH-like protein LJF99_09515 PF00317 Ribonucleotide reductase, all-alpha domain LJF99_09515 PF08343 Ribonucleotide reductase N-terminal LJF99_09515 PF02867 Ribonucleotide reductase, barrel domain LJF99_09545 PF18339 RapA N-terminal Tudor like domain 1 LJF99_09545 PF18337 RapA N-terminal Tudor like domain LJF99_09545 PF00271 Helicase conserved C-terminal domain LJF99_09545 PF12137 RNA polymerase recycling family C-terminal LJF99_09545 PF00176 SNF2 family N-terminal domain LJF99_09550 PF00849 RNA pseudouridylate synthase LJF99_09560 PF00563 EAL domain LJF99_09560 PF03707 Bacterial signalling protein N terminal repeat LJF99_09560 PF00990 Diguanylate cyclase, GGDEF domain LJF99_09560 PF13188 PAS domain LJF99_09570 PF00118 TCP-1/cpn60 chaperonin family LJF99_09575 PF00166 Chaperonin 10 Kd subunit LJF99_09580 PF01554 MatE LJF99_09585 PF04186 FxsA cytoplasmic membrane protein LJF99_09590 PF10415 Fumarase C C-terminus LJF99_09590 PF00206 Lyase LJF99_09595 PF03605 Anaerobic c4-dicarboxylate membrane transporter LJF99_09600 PF00267 Gram-negative porin LJF99_09605 PF07690 Major Facilitator Superfamily LJF99_09610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_09610 PF03466 LysR substrate binding domain LJF99_09620 PF13302 Acetyltransferase (GNAT) domain LJF99_09625 PF13302 Acetyltransferase (GNAT) domain LJF99_09645 PF07690 Major Facilitator Superfamily LJF99_09650 PF01725 Ham1 family LJF99_09655 PF06969 HemN C-terminal domain LJF99_09655 PF04055 Radical SAM superfamily LJF99_09660 PF03889 Alternative ribosome-rescue factor A LJF99_09665 PF01872 RibD C-terminal domain LJF99_09670 PF13411 MerR HTH family regulatory protein LJF99_09675 PF01808 AICARFT/IMPCHase bienzyme LJF99_09675 PF02142 MGS-like domain LJF99_09680 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LJF99_09680 PF02843 Phosphoribosylglycinamide synthetase, C domain LJF99_09680 PF02844 Phosphoribosylglycinamide synthetase, N domain LJF99_09695 PF00128 Alpha amylase, catalytic domain LJF99_09710 PF13358 DDE superfamily endonuclease LJF99_09710 PF13592 Winged helix-turn helix LJF99_09720 PF04542 Sigma-70 region 2 LJF99_09720 PF04546 Sigma-70, non-essential region LJF99_09720 PF03979 Sigma-70 factor, region 1.1 LJF99_09720 PF04539 Sigma-70 region 3 LJF99_09720 PF00140 Sigma-70 factor, region 1.2 LJF99_09720 PF04545 Sigma-70, region 4 LJF99_09725 PF01807 CHC2 zinc finger LJF99_09725 PF08275 DNA primase catalytic core, N-terminal domain LJF99_09725 PF08278 DNA primase DnaG DnaB-binding LJF99_09725 PF10410 DnaB-helicase binding domain of primase LJF99_09730 PF09424 Yqey-like protein LJF99_09735 PF01165 Ribosomal protein S21 LJF99_09740 PF00814 Glycoprotease family LJF99_09745 PF04539 Sigma-70 region 3 LJF99_09745 PF00140 Sigma-70 factor, region 1.2 LJF99_09745 PF04542 Sigma-70 region 2 LJF99_09745 PF04545 Sigma-70, region 4 LJF99_09750 PF01551 Peptidase family M23 LJF99_09750 PF01476 LysM domain LJF99_09755 PF09335 SNARE associated Golgi protein LJF99_09765 PF01975 Survival protein SurE LJF99_09770 PF01142 tRNA pseudouridine synthase D (TruD) LJF99_09775 PF02542 YgbB family LJF99_09780 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LJF99_09785 PF04977 Septum formation initiator LJF99_09790 PF00113 Enolase, C-terminal TIM barrel domain LJF99_09790 PF03952 Enolase, N-terminal domain LJF99_09795 PF00117 Glutamine amidotransferase class-I LJF99_09795 PF06418 CTP synthase N-terminus LJF99_09800 PF03819 MazG nucleotide pyrophosphohydrolase domain LJF99_09805 PF02824 TGS domain LJF99_09805 PF04607 Region found in RelA / SpoT proteins LJF99_09805 PF13291 ACT domain LJF99_09810 PF05958 tRNA (Uracil-5-)-methyltransferase LJF99_09810 PF01938 TRAM domain LJF99_09815 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJF99_09815 PF00072 Response regulator receiver domain LJF99_09815 PF01627 Hpt domain LJF99_09815 PF00672 HAMP domain LJF99_09815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_09815 PF00512 His Kinase A (phospho-acceptor) domain LJF99_09820 PF07308 Protein of unknown function (DUF1456) LJF99_09825 PF01510 N-acetylmuramoyl-L-alanine amidase LJF99_09830 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LJF99_09835 PF11967 Recombination protein O N terminal LJF99_09835 PF02565 Recombination protein O C terminal LJF99_09840 PF01926 50S ribosome-binding GTPase LJF99_09840 PF07650 KH domain LJF99_09845 PF00035 Double-stranded RNA binding motif LJF99_09845 PF14622 Ribonuclease-III-like LJF99_09850 PF10502 Signal peptidase, peptidase S26 LJF99_09855 PF00679 Elongation factor G C-terminus LJF99_09855 PF00009 Elongation factor Tu GTP binding domain LJF99_09855 PF06421 GTP-binding protein LepA C-terminus LJF99_09855 PF03144 Elongation factor Tu domain 2 LJF99_09865 PF17188 MucB/RseB C-terminal domain LJF99_09865 PF03888 MucB/RseB N-terminal domain LJF99_09870 PF03872 Anti sigma-E protein RseA, N-terminal domain LJF99_09870 PF03873 Anti sigma-E protein RseA, C-terminal domain LJF99_09875 PF04542 Sigma-70 region 2 LJF99_09875 PF08281 Sigma-70, region 4 LJF99_09880 PF00890 FAD binding domain LJF99_09880 PF02910 Fumarate reductase flavoprotein C-term LJF99_09890 PF03937 Flavinator of succinate dehydrogenase LJF99_09895 PF01571 Aminomethyltransferase folate-binding domain LJF99_09915 PF03091 CutA1 divalent ion tolerance protein LJF99_09920 PF02683 Cytochrome C biogenesis protein transmembrane region LJF99_09920 PF11412 Disulphide bond corrector protein DsbC LJF99_09930 PF01266 FAD dependent oxidoreductase LJF99_09935 PF01116 Fructose-bisphosphate aldolase class-II LJF99_09940 PF00162 Phosphoglycerate kinase LJF99_09945 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJF99_09945 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJF99_09950 PF00480 ROK family LJF99_09965 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LJF99_09980 PF00005 ABC transporter LJF99_10000 PF08447 PAS fold LJF99_10000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_10005 PF13592 Winged helix-turn helix LJF99_10005 PF13358 DDE superfamily endonuclease LJF99_10020 PF03600 Citrate transporter LJF99_10020 PF02080 TrkA-C domain LJF99_10025 PF00009 Elongation factor Tu GTP binding domain LJF99_10030 PF01507 Phosphoadenosine phosphosulfate reductase family LJF99_10035 PF10414 Sirohaem synthase dimerisation region LJF99_10035 PF14824 Sirohaem biosynthesis protein central LJF99_10035 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJF99_10040 PF01145 SPFH domain / Band 7 family LJF99_10040 PF16200 C-terminal region of band_7 LJF99_10045 PF01957 NfeD-like C-terminal, partner-binding LJF99_10050 PF01380 SIS domain LJF99_10050 PF00571 CBS domain LJF99_10055 PF12848 ABC transporter LJF99_10055 PF00005 ABC transporter LJF99_10065 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LJF99_10125 PF13358 DDE superfamily endonuclease LJF99_10125 PF13592 Winged helix-turn helix LJF99_10135 PF13411 MerR HTH family regulatory protein LJF99_10145 PF00474 Sodium:solute symporter family LJF99_10150 PF17969 L,D-transpeptidase C-terminal domain LJF99_10150 PF03734 L,D-transpeptidase catalytic domain LJF99_10155 PF00924 Mechanosensitive ion channel LJF99_10160 PF00871 Acetokinase family LJF99_10165 PF04074 YhcH/YjgK/YiaL LJF99_10175 PF01177 Asp/Glu/Hydantoin racemase LJF99_10180 PF01810 LysE type translocator LJF99_10215 PF00209 Sodium:neurotransmitter symporter family LJF99_10225 PF00209 Sodium:neurotransmitter symporter family LJF99_10245 PF07690 Major Facilitator Superfamily LJF99_10260 PF01037 Lrp/AsnC ligand binding domain LJF99_10275 PF01047 MarR family LJF99_10280 PF02566 OsmC-like protein LJF99_10285 PF16884 N-terminal domain of oxidoreductase LJF99_10285 PF00107 Zinc-binding dehydrogenase LJF99_10290 PF00293 NUDIX domain LJF99_10305 PF03710 Glutamate-ammonia ligase adenylyltransferase LJF99_10305 PF08335 GlnD PII-uridylyltransferase LJF99_10310 PF08220 DeoR-like helix-turn-helix domain LJF99_10310 PF00455 DeoR C terminal sensor domain LJF99_10320 PF00106 short chain dehydrogenase LJF99_10325 PF03829 PTS system glucitol/sorbitol-specific IIA component LJF99_10330 PF07663 Sorbitol phosphotransferase enzyme II C-terminus LJF99_10330 PF03612 Sorbitol phosphotransferase enzyme II N-terminus LJF99_10335 PF03608 PTS system enzyme II sorbitol-specific factor LJF99_10340 PF03710 Glutamate-ammonia ligase adenylyltransferase LJF99_10340 PF08335 GlnD PII-uridylyltransferase LJF99_10360 PF05170 AsmA family LJF99_10365 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJF99_10365 PF00326 Prolyl oligopeptidase family LJF99_10370 PF00005 ABC transporter LJF99_10370 PF12704 MacB-like periplasmic core domain LJF99_10370 PF02687 FtsX-like permease family LJF99_10375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_10380 PF00486 Transcriptional regulatory protein, C terminal LJF99_10380 PF00072 Response regulator receiver domain LJF99_10385 PF00512 His Kinase A (phospho-acceptor) domain LJF99_10385 PF00672 HAMP domain LJF99_10385 PF16527 Two-component sensor protein CpxA, periplasmic domain LJF99_10385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_10390 PF00293 NUDIX domain LJF99_10390 PF09297 NADH pyrophosphatase zinc ribbon domain LJF99_10390 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LJF99_10425 PF03060 Nitronate monooxygenase LJF99_10435 PF00445 Ribonuclease T2 family LJF99_10455 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase LJF99_10470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_10470 PF03466 LysR substrate binding domain LJF99_10475 PF00271 Helicase conserved C-terminal domain LJF99_10475 PF00270 DEAD/DEAH box helicase LJF99_10485 PF00753 Metallo-beta-lactamase superfamily LJF99_10495 PF01425 Amidase LJF99_10500 PF04371 Porphyromonas-type peptidyl-arginine deiminase LJF99_10505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_10505 PF03466 LysR substrate binding domain LJF99_10510 PF00106 short chain dehydrogenase LJF99_10525 PF00378 Enoyl-CoA hydratase/isomerase LJF99_10530 PF10952 Protein of unknown function (DUF2753) LJF99_10535 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_10545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_10560 PF02594 Uncharacterised ACR, YggU family COG1872 LJF99_10565 PF02325 YGGT family LJF99_10570 PF03807 NADP oxidoreductase coenzyme F420-dependent LJF99_10570 PF14748 Pyrroline-5-carboxylate reductase dimerisation LJF99_10575 PF01168 Alanine racemase, N-terminal domain LJF99_10580 PF00437 Type II/IV secretion system protein LJF99_10585 PF00437 Type II/IV secretion system protein LJF99_10590 PF03883 Peroxide stress protein YaaA LJF99_10595 PF00270 DEAD/DEAH box helicase LJF99_10595 PF00271 Helicase conserved C-terminal domain LJF99_10600 PF05175 Methyltransferase small domain LJF99_10605 PF05525 Branched-chain amino acid transport protein LJF99_10620 PF01475 Ferric uptake regulator family LJF99_10625 PF01207 Dihydrouridine synthase (Dus) LJF99_10640 PF00216 Bacterial DNA-binding protein LJF99_10645 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LJF99_10650 PF07238 PilZ domain LJF99_10655 PF18073 Rubredoxin metal binding domain LJF99_10670 PF18429 Domain of unknown function (DUF5609) LJF99_10680 PF01048 Phosphorylase superfamily LJF99_10685 PF01676 Metalloenzyme superfamily LJF99_10690 PF02885 Glycosyl transferase family, helical bundle domain LJF99_10690 PF00591 Glycosyl transferase family, a/b domain LJF99_10690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LJF99_10695 PF01791 DeoC/LacD family aldolase LJF99_10705 PF07670 Nucleoside recognition LJF99_10705 PF07662 Na+ dependent nucleoside transporter C-terminus LJF99_10705 PF01773 Na+ dependent nucleoside transporter N-terminus LJF99_10710 PF01026 TatD related DNase LJF99_10715 PF07963 Prokaryotic N-terminal methylation motif LJF99_10725 PF00583 Acetyltransferase (GNAT) family LJF99_10730 PF05958 tRNA (Uracil-5-)-methyltransferase LJF99_10730 PF01938 TRAM domain LJF99_10735 PF00909 Ammonium Transporter Family LJF99_10740 PF02661 Fic/DOC family LJF99_10740 PF13784 Fic/DOC family N-terminal LJF99_10765 PF18818 Metallopeptidase superfamily domain LJF99_10765 PF08401 Domain of unknown function (DUF1738) LJF99_10765 PF13362 Toprim domain LJF99_10785 PF08346 AntA/AntB antirepressor LJF99_10785 PF10548 P22AR C-terminal domain LJF99_10800 PF13592 Winged helix-turn helix LJF99_10800 PF13358 DDE superfamily endonuclease LJF99_10805 PF02321 Outer membrane efflux protein LJF99_10810 PF01467 Cytidylyltransferase-like LJF99_10810 PF00294 pfkB family carbohydrate kinase LJF99_10815 PF03279 Bacterial lipid A biosynthesis acyltransferase LJF99_10830 PF01865 Protein of unknown function DUF47 LJF99_10835 PF01384 Phosphate transporter family LJF99_10840 PF01966 HD domain LJF99_10840 PF12627 Probable RNA and SrmB- binding site of polymerase A LJF99_10840 PF01743 Poly A polymerase head domain LJF99_10845 PF13401 AAA domain LJF99_10845 PF01471 Putative peptidoglycan binding domain LJF99_10850 PF16537 Type II secretion system protein B LJF99_10855 PF10576 Iron-sulfur binding domain of endonuclease III LJF99_10855 PF00730 HhH-GPD superfamily base excision DNA repair protein LJF99_10855 PF14815 NUDIX domain LJF99_10855 PF00633 Helix-hairpin-helix motif LJF99_10860 PF04362 Bacterial Fe(2+) trafficking LJF99_10865 PF01464 Transglycosylase SLT domain LJF99_10865 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LJF99_10870 PF04076 Bacterial OB fold (BOF) protein LJF99_10875 PF00657 GDSL-like Lipase/Acylhydrolase LJF99_10885 PF01389 OmpA-like transmembrane domain LJF99_10885 PF00691 OmpA family LJF99_10890 PF03886 ABC-type transport auxiliary lipoprotein component LJF99_10895 PF02470 MlaD protein LJF99_10900 PF04403 Paraquat-inducible protein A LJF99_10905 PF17209 Hfq protein LJF99_10910 PF13419 Haloacid dehalogenase-like hydrolase LJF99_10925 PF00701 Dihydrodipicolinate synthetase family LJF99_10930 PF08468 Methyltransferase small domain N-terminal LJF99_10930 PF05175 Methyltransferase small domain LJF99_10935 PF00483 Nucleotidyl transferase LJF99_10940 PF08323 Starch synthase catalytic domain LJF99_10940 PF00534 Glycosyl transferases group 1 LJF99_10980 PF03553 Na+/H+ antiporter family LJF99_10990 PF14602 Hexapeptide repeat of succinyl-transferase LJF99_10990 PF12464 Maltose acetyltransferase LJF99_10995 PF00128 Alpha amylase, catalytic domain LJF99_10995 PF11941 Domain of unknown function (DUF3459) LJF99_11005 PF00356 Bacterial regulatory proteins, lacI family LJF99_11015 PF02378 Phosphotransferase system, EIIC LJF99_11020 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJF99_11025 PF02378 Phosphotransferase system, EIIC LJF99_11030 PF00232 Glycosyl hydrolase family 1 LJF99_11035 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LJF99_11040 PF00480 ROK family LJF99_11050 PF00356 Bacterial regulatory proteins, lacI family LJF99_11060 PF00710 Asparaginase, N-terminal LJF99_11060 PF17763 Glutaminase/Asparaginase C-terminal domain LJF99_11075 PF02142 MGS-like domain LJF99_11085 PF00210 Ferritin-like domain LJF99_11100 PF08351 Domain of unknown function (DUF1726) LJF99_11100 PF13718 GNAT acetyltransferase 2 LJF99_11100 PF05127 Helicase LJF99_11100 PF17176 tRNA-binding domain LJF99_11105 PF00106 short chain dehydrogenase LJF99_11110 PF00072 Response regulator receiver domain LJF99_11110 PF01584 CheW-like domain LJF99_11120 PF07670 Nucleoside recognition LJF99_11220 PF02660 Glycerol-3-phosphate acyltransferase LJF99_11225 PF02152 Dihydroneopterin aldolase LJF99_11230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LJF99_11240 PF07690 Major Facilitator Superfamily LJF99_11245 PF02492 CobW/HypB/UreG, nucleotide-binding domain LJF99_11245 PF07683 Cobalamin synthesis protein cobW C-terminal domain LJF99_11255 PF01810 LysE type translocator LJF99_11260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_11260 PF03466 LysR substrate binding domain LJF99_11265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_11265 PF03466 LysR substrate binding domain LJF99_11275 PF00563 EAL domain LJF99_11275 PF12792 CSS motif domain associated with EAL LJF99_11280 PF06434 Aconitate hydratase 2 N-terminus LJF99_11280 PF00330 Aconitase family (aconitate hydratase) LJF99_11280 PF11791 Aconitate B N-terminal domain LJF99_11295 PF00672 HAMP domain LJF99_11295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_11295 PF12729 Four helix bundle sensory module for signal transduction LJF99_11305 PF13426 PAS domain LJF99_11305 PF00990 Diguanylate cyclase, GGDEF domain LJF99_11305 PF05231 MASE1 LJF99_11305 PF00563 EAL domain LJF99_11305 PF08447 PAS fold LJF99_11305 PF08448 PAS fold LJF99_11310 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJF99_11310 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_11315 PF02817 e3 binding domain LJF99_11315 PF00364 Biotin-requiring enzyme LJF99_11315 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJF99_11320 PF00456 Transketolase, thiamine diphosphate binding domain LJF99_11320 PF17831 Pyruvate dehydrogenase E1 component middle domain LJF99_11325 PF07729 FCD domain LJF99_11325 PF00392 Bacterial regulatory proteins, gntR family LJF99_11330 PF01510 N-acetylmuramoyl-L-alanine amidase LJF99_11340 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LJF99_11340 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LJF99_11345 PF07963 Prokaryotic N-terminal methylation motif LJF99_11350 PF00437 Type II/IV secretion system protein LJF99_11350 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LJF99_11360 PF01478 Type IV leader peptidase family LJF99_11360 PF06750 Bacterial Peptidase A24 N-terminal domain LJF99_11365 PF01121 Dephospho-CoA kinase LJF99_11370 PF07072 Cell division protein LJF99_11375 PF03884 DNA gyrase inhibitor YacG LJF99_11380 PF00293 NUDIX domain LJF99_11390 PF01043 SecA preprotein cross-linking domain LJF99_11390 PF07517 SecA DEAD-like domain LJF99_11390 PF02810 SEC-C motif LJF99_11390 PF07516 SecA Wing and Scaffold domain LJF99_11400 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LJF99_11405 PF12327 FtsZ family, C-terminal domain LJF99_11405 PF00091 Tubulin/FtsZ family, GTPase domain LJF99_11410 PF02491 SHS2 domain inserted in FTSA LJF99_11415 PF03799 Cell division protein FtsQ LJF99_11415 PF08478 POTRA domain, FtsQ-type LJF99_11420 PF08245 Mur ligase middle domain LJF99_11420 PF02875 Mur ligase family, glutamate ligase domain LJF99_11420 PF01225 Mur ligase family, catalytic domain LJF99_11425 PF03033 Glycosyltransferase family 28 N-terminal domain LJF99_11425 PF04101 Glycosyltransferase family 28 C-terminal domain LJF99_11430 PF01098 Cell cycle protein LJF99_11435 PF02875 Mur ligase family, glutamate ligase domain LJF99_11435 PF08245 Mur ligase middle domain LJF99_11440 PF00953 Glycosyl transferase family 4 LJF99_11440 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LJF99_11445 PF01225 Mur ligase family, catalytic domain LJF99_11445 PF02875 Mur ligase family, glutamate ligase domain LJF99_11445 PF08245 Mur ligase middle domain LJF99_11450 PF01225 Mur ligase family, catalytic domain LJF99_11450 PF02875 Mur ligase family, glutamate ligase domain LJF99_11450 PF08245 Mur ligase middle domain LJF99_11455 PF03717 Penicillin-binding Protein dimerisation domain LJF99_11455 PF00905 Penicillin binding protein transpeptidase domain LJF99_11460 PF04999 Cell division protein FtsL LJF99_11465 PF01795 MraW methylase family LJF99_11470 PF02381 MraZ protein, putative antitoxin-like LJF99_11480 PF01464 Transglycosylase SLT domain LJF99_11480 PF01476 LysM domain LJF99_11485 PF00691 OmpA family LJF99_11485 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJF99_11490 PF01618 MotA/TolQ/ExbB proton channel family LJF99_11515 PF02561 Flagellar protein FliS LJF99_11520 PF07196 Flagellin hook IN motif LJF99_11520 PF07195 Flagellar hook-associated protein 2 C-terminus LJF99_11520 PF02465 Flagellar hook-associated protein 2 N-terminus LJF99_11535 PF00700 Bacterial flagellin C-terminal helical region LJF99_11535 PF00669 Bacterial flagellin N-terminal helical region LJF99_11555 PF00460 Flagella basal body rod protein LJF99_11555 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_11565 PF02119 Flagellar P-ring protein LJF99_11570 PF02107 Flagellar L-ring protein LJF99_11575 PF00460 Flagella basal body rod protein LJF99_11575 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_11580 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_11580 PF00460 Flagella basal body rod protein LJF99_11585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_11585 PF00460 Flagella basal body rod protein LJF99_11585 PF07559 Flagellar basal body protein FlaE LJF99_11595 PF13861 FlgD Tudor-like domain LJF99_11595 PF13860 FlgD Ig-like domain LJF99_11595 PF03963 Flagellar hook capping protein - N-terminal region LJF99_11600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_11600 PF00460 Flagella basal body rod protein LJF99_11605 PF00460 Flagella basal body rod protein LJF99_11615 PF04316 Anti-sigma-28 factor, FlgM LJF99_11630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_11630 PF18269 T3SS EscN ATPase C-terminal domain LJF99_11640 PF01706 FliG C-terminal domain LJF99_11640 PF14841 FliG middle domain LJF99_11640 PF14842 FliG N-terminal domain LJF99_11645 PF01514 Secretory protein of YscJ/FliF family LJF99_11645 PF08345 Flagellar M-ring protein C-terminal LJF99_11650 PF02049 Flagellar hook-basal body complex protein FliE LJF99_11655 PF00158 Sigma-54 interaction domain LJF99_11655 PF02954 Bacterial regulatory protein, Fis family LJF99_11655 PF00072 Response regulator receiver domain LJF99_11660 PF00771 FHIPEP family LJF99_11665 PF01312 FlhB HrpN YscU SpaS Family LJF99_11670 PF01311 Bacterial export proteins, family 1 LJF99_11675 PF01313 Bacterial export proteins, family 3 LJF99_11680 PF00813 FliP family LJF99_11685 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJF99_11700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJF99_11705 PF04348 LppC putative lipoprotein LJF99_11710 PF02021 Uncharacterised protein family UPF0102 LJF99_11715 PF13580 SIS domain LJF99_11720 PF04972 BON domain LJF99_11725 PF04386 Stringent starvation protein B LJF99_11730 PF02798 Glutathione S-transferase, N-terminal domain LJF99_11730 PF00043 Glutathione S-transferase, C-terminal domain LJF99_11735 PF02167 Cytochrome C1 family LJF99_11740 PF00032 Cytochrome b(C-terminal)/b6/petD LJF99_11740 PF00033 Cytochrome b/b6/petB LJF99_11745 PF00355 Rieske [2Fe-2S] domain LJF99_11745 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LJF99_11750 PF00380 Ribosomal protein S9/S16 LJF99_11755 PF00572 Ribosomal protein L13 LJF99_11760 PF03969 AFG1-like ATPase LJF99_11770 PF00595 PDZ domain LJF99_11770 PF13180 PDZ domain LJF99_11775 PF13180 PDZ domain LJF99_11805 PF01979 Amidohydrolase family LJF99_11810 PF03841 L-seryl-tRNA selenium transferase LJF99_11815 PF07071 KDGP aldolase LJF99_11825 PF00381 PTS HPr component phosphorylation site LJF99_11830 PF03668 P-loop ATPase protein family LJF99_11835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJF99_11840 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LJF99_11845 PF00309 Sigma-54 factor, Activator interacting domain (AID) LJF99_11845 PF04963 Sigma-54 factor, core binding domain LJF99_11845 PF04552 Sigma-54, DNA binding domain LJF99_11850 PF00005 ABC transporter LJF99_11850 PF12399 Branched-chain amino acid ATP-binding cassette transporter LJF99_11855 PF03968 OstA-like protein LJF99_11860 PF06835 Lipopolysaccharide-assembly, LptC-related LJF99_11870 PF01380 SIS domain LJF99_11870 PF00571 CBS domain LJF99_11875 PF00005 ABC transporter LJF99_11880 PF02405 Permease MlaE LJF99_11885 PF02470 MlaD protein LJF99_11890 PF05494 MlaC protein LJF99_11900 PF01722 BolA-like protein LJF99_11905 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LJF99_11910 PF01523 Putative modulator of DNA gyrase LJF99_11915 PF04751 Protein of unknown function (DUF615) LJF99_11925 PF04363 Protein of unknown function (DUF496) LJF99_11955 PF03144 Elongation factor Tu domain 2 LJF99_11955 PF00009 Elongation factor Tu GTP binding domain LJF99_11955 PF03143 Elongation factor Tu C-terminal domain LJF99_11960 PF00009 Elongation factor Tu GTP binding domain LJF99_11960 PF00679 Elongation factor G C-terminus LJF99_11960 PF14492 Elongation Factor G, domain II LJF99_11960 PF03764 Elongation factor G, domain IV LJF99_11960 PF03144 Elongation factor Tu domain 2 LJF99_11965 PF00177 Ribosomal protein S7p/S5e LJF99_11970 PF00164 Ribosomal protein S12/S23 LJF99_11975 PF04077 DsrH like protein LJF99_11980 PF02635 DsrE/DsrF-like family LJF99_11985 PF02635 DsrE/DsrF-like family LJF99_11990 PF01042 Endoribonuclease L-PSP LJF99_11995 PF13309 HTH domain LJF99_11995 PF08348 YheO-like PAS domain LJF99_12000 PF04983 RNA polymerase Rpb1, domain 3 LJF99_12000 PF04997 RNA polymerase Rpb1, domain 1 LJF99_12000 PF04998 RNA polymerase Rpb1, domain 5 LJF99_12000 PF00623 RNA polymerase Rpb1, domain 2 LJF99_12000 PF05000 RNA polymerase Rpb1, domain 4 LJF99_12005 PF04565 RNA polymerase Rpb2, domain 3 LJF99_12005 PF04561 RNA polymerase Rpb2, domain 2 LJF99_12005 PF04563 RNA polymerase beta subunit LJF99_12005 PF00562 RNA polymerase Rpb2, domain 6 LJF99_12005 PF10385 RNA polymerase beta subunit external 1 domain LJF99_12005 PF04560 RNA polymerase Rpb2, domain 7 LJF99_12010 PF00542 Ribosomal protein L7/L12 C-terminal domain LJF99_12010 PF16320 Ribosomal protein L7/L12 dimerisation domain LJF99_12015 PF00466 Ribosomal protein L10 LJF99_12020 PF00687 Ribosomal protein L1p/L10e family LJF99_12025 PF03946 Ribosomal protein L11, N-terminal domain LJF99_12025 PF00298 Ribosomal protein L11, RNA binding domain LJF99_12030 PF02357 Transcription termination factor nusG LJF99_12030 PF00467 KOW motif LJF99_12035 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LJF99_12045 PF00009 Elongation factor Tu GTP binding domain LJF99_12045 PF03143 Elongation factor Tu C-terminal domain LJF99_12045 PF03144 Elongation factor Tu domain 2 LJF99_12060 PF00485 Phosphoribulokinase / Uridine kinase family LJF99_12065 PF02237 Biotin protein ligase C terminal domain LJF99_12065 PF03099 Biotin/lipoate A/B protein ligase family LJF99_12065 PF08279 HTH domain LJF99_12070 PF01565 FAD binding domain LJF99_12070 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LJF99_12075 PF02254 TrkA-N domain LJF99_12075 PF02080 TrkA-C domain LJF99_12080 PF02386 Cation transport protein LJF99_12085 PF01131 DNA topoisomerase LJF99_12085 PF01751 Toprim domain LJF99_12090 PF03264 NapC/NirT cytochrome c family, N-terminal region LJF99_12095 PF00384 Molybdopterin oxidoreductase LJF99_12095 PF18364 Molybdopterin oxidoreductase N-terminal domain LJF99_12095 PF01568 Molydopterin dinucleotide binding domain LJF99_12105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_12110 PF00072 Response regulator receiver domain LJF99_12110 PF00486 Transcriptional regulatory protein, C terminal LJF99_12125 PF01794 Ferric reductase like transmembrane component LJF99_12130 PF00174 Oxidoreductase molybdopterin binding domain LJF99_12135 PF06496 Protein of unknown function (DUF1097) LJF99_12140 PF00072 Response regulator receiver domain LJF99_12140 PF00158 Sigma-54 interaction domain LJF99_12150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_12150 PF00512 His Kinase A (phospho-acceptor) domain LJF99_12170 PF01368 DHH family LJF99_12170 PF00571 CBS domain LJF99_12170 PF02272 DHHA1 domain LJF99_12170 PF01743 Poly A polymerase head domain LJF99_12185 PF01037 Lrp/AsnC ligand binding domain LJF99_12190 PF03590 Aspartate-ammonia ligase LJF99_12195 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_12195 PF07724 AAA domain (Cdc48 subfamily) LJF99_12195 PF17871 AAA lid domain LJF99_12195 PF02861 Clp amino terminal domain, pathogenicity island component LJF99_12195 PF10431 C-terminal, D2-small domain, of ClpB protein LJF99_12200 PF02578 Multi-copper polyphenol oxidoreductase laccase LJF99_12205 PF00849 RNA pseudouridylate synthase LJF99_12205 PF01479 S4 domain LJF99_12210 PF13525 Outer membrane lipoprotein LJF99_12215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJF99_12215 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_12220 PF00375 Sodium:dicarboxylate symporter family LJF99_12225 PF03313 Serine dehydratase alpha chain LJF99_12230 PF13309 HTH domain LJF99_12230 PF08348 YheO-like PAS domain LJF99_12240 PF02233 NAD(P) transhydrogenase beta subunit LJF99_12245 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LJF99_12245 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LJF99_12245 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LJF99_12250 PF00465 Iron-containing alcohol dehydrogenase LJF99_12255 PF06719 AraC-type transcriptional regulator N-terminus LJF99_12255 PF12833 Helix-turn-helix domain LJF99_12260 PF08212 Lipocalin-like domain LJF99_12265 PF02743 Cache domain LJF99_12265 PF00672 HAMP domain LJF99_12265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_12270 PF02666 Phosphatidylserine decarboxylase LJF99_12285 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LJF99_12285 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LJF99_12290 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LJF99_12290 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LJF99_12295 PF02863 Arginine repressor, C-terminal domain LJF99_12295 PF01316 Arginine repressor, DNA binding domain LJF99_12300 PF03606 C4-dicarboxylate anaerobic carrier LJF99_12305 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LJF99_12305 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LJF99_12310 PF00696 Amino acid kinase family LJF99_12335 PF02743 Cache domain LJF99_12335 PF00672 HAMP domain LJF99_12335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_12345 PF00005 ABC transporter LJF99_12350 PF13407 Periplasmic binding protein domain LJF99_12360 PF00356 Bacterial regulatory proteins, lacI family LJF99_12365 PF16363 GDP-mannose 4,6 dehydratase LJF99_12370 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LJF99_12370 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LJF99_12375 PF10509 Galactokinase galactose-binding signature LJF99_12375 PF08544 GHMP kinases C terminal LJF99_12375 PF00288 GHMP kinases N terminal domain LJF99_12380 PF01263 Aldose 1-epimerase LJF99_12385 PF00248 Aldo/keto reductase family LJF99_12390 PF02673 Bacitracin resistance protein BacA LJF99_12400 PF04542 Sigma-70 region 2 LJF99_12400 PF04545 Sigma-70, region 4 LJF99_12410 PF03485 Arginyl tRNA synthetase N terminal domain LJF99_12410 PF05746 DALR anticodon binding domain LJF99_12410 PF00750 tRNA synthetases class I (R) LJF99_12420 PF00227 Proteasome subunit LJF99_12425 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_12425 PF07724 AAA domain (Cdc48 subfamily) LJF99_12425 PF10431 C-terminal, D2-small domain, of ClpB protein LJF99_12430 PF07690 Major Facilitator Superfamily LJF99_12435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_12435 PF03466 LysR substrate binding domain LJF99_12440 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_12440 PF18267 Rubredoxin NAD+ reductase C-terminal domain LJF99_12440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LJF99_12440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LJF99_12440 PF04324 BFD-like [2Fe-2S] binding domain LJF99_12450 PF13806 Rieske-like [2Fe-2S] domain LJF99_12455 PF01226 Formate/nitrite transporter LJF99_12460 PF10414 Sirohaem synthase dimerisation region LJF99_12460 PF14824 Sirohaem biosynthesis protein central LJF99_12460 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LJF99_12465 PF00571 CBS domain LJF99_12465 PF01769 Divalent cation transporter LJF99_12465 PF03448 MgtE intracellular N domain LJF99_12475 PF03737 Aldolase/RraA LJF99_12480 PF02592 Putative vitamin uptake transporter LJF99_12490 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LJF99_12495 PF00034 Cytochrome c LJF99_12500 PF00270 DEAD/DEAH box helicase LJF99_12500 PF16124 RecQ zinc-binding LJF99_12500 PF00570 HRDC domain LJF99_12500 PF00271 Helicase conserved C-terminal domain LJF99_12500 PF09382 RQC domain LJF99_12505 PF03061 Thioesterase superfamily LJF99_12520 PF03475 3-alpha domain LJF99_12520 PF03473 MOSC domain LJF99_12525 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_12530 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_12535 PF00005 ABC transporter LJF99_12535 PF08402 TOBE domain LJF99_12540 PF13416 Bacterial extracellular solute-binding protein LJF99_12545 PF13416 Bacterial extracellular solute-binding protein LJF99_12550 PF00202 Aminotransferase class-III LJF99_12555 PF00120 Glutamine synthetase, catalytic domain LJF99_12560 PF01258 Prokaryotic dksA/traR C4-type zinc finger LJF99_12570 PF05981 CreA protein LJF99_12575 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJF99_12575 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_12580 PF00012 Hsp70 protein LJF99_12595 PF00128 Alpha amylase, catalytic domain LJF99_12595 PF02903 Alpha amylase, N-terminal ig-like domain LJF99_12600 PF02719 Polysaccharide biosynthesis protein LJF99_12610 PF13358 DDE superfamily endonuclease LJF99_12610 PF13592 Winged helix-turn helix LJF99_12620 PF01501 Glycosyl transferase family 8 LJF99_12620 PF08437 Glycosyl transferase family 8 C-terminal LJF99_12640 PF00501 AMP-binding enzyme LJF99_12640 PF13193 AMP-binding enzyme C-terminal domain LJF99_12660 PF02348 Cytidylyltransferase LJF99_12670 PF03102 NeuB family LJF99_12670 PF08666 SAF domain LJF99_12740 PF05958 tRNA (Uracil-5-)-methyltransferase LJF99_12745 PF00486 Transcriptional regulatory protein, C terminal LJF99_12745 PF00072 Response regulator receiver domain LJF99_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_12750 PF00512 His Kinase A (phospho-acceptor) domain LJF99_12750 PF00672 HAMP domain LJF99_12760 PF00390 Malic enzyme, N-terminal domain LJF99_12760 PF03949 Malic enzyme, NAD binding domain LJF99_12765 PF13460 NAD(P)H-binding LJF99_12765 PF11066 Protein of unknown function (DUF2867) LJF99_12770 PF01197 Ribosomal protein L31 LJF99_12775 PF00270 DEAD/DEAH box helicase LJF99_12775 PF00271 Helicase conserved C-terminal domain LJF99_12775 PF17764 3′ DNA-binding domain (3′BD) LJF99_12775 PF18074 Primosomal protein N C-terminal domain LJF99_12775 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LJF99_12785 PF00440 Bacterial regulatory proteins, tetR family LJF99_12795 PF00691 OmpA family LJF99_12795 PF01389 OmpA-like transmembrane domain LJF99_12800 PF00585 C-terminal regulatory domain of Threonine dehydratase LJF99_12800 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_12805 PF00920 Dehydratase family LJF99_12810 PF01063 Amino-transferase class IV LJF99_12820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJF99_12820 PF00205 Thiamine pyrophosphate enzyme, central domain LJF99_12820 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJF99_12830 PF01553 Acyltransferase LJF99_12835 PF04463 Protein of unknown function (DUF523) LJF99_12845 PF00857 Isochorismatase family LJF99_12850 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LJF99_12850 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LJF99_12860 PF00005 ABC transporter LJF99_12865 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_12870 PF01323 DSBA-like thioredoxin domain LJF99_12875 PF01636 Phosphotransferase enzyme family LJF99_12880 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LJF99_12880 PF12801 4Fe-4S binding domain LJF99_12880 PF13746 4Fe-4S dicluster domain LJF99_12885 PF06288 Protein of unknown function (DUF1040) LJF99_12890 PF00563 EAL domain LJF99_12890 PF01590 GAF domain LJF99_12890 PF00990 Diguanylate cyclase, GGDEF domain LJF99_12890 PF00360 Phytochrome region LJF99_12895 PF13411 MerR HTH family regulatory protein LJF99_12900 PF00403 Heavy-metal-associated domain LJF99_12905 PF00156 Phosphoribosyl transferase domain LJF99_12910 PF03725 3' exoribonuclease family, domain 2 LJF99_12910 PF01138 3' exoribonuclease family, domain 1 LJF99_12915 PF08340 Domain of unknown function (DUF1732) LJF99_12915 PF03755 YicC-like family, N-terminal region LJF99_12930 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) LJF99_12945 PF00534 Glycosyl transferases group 1 LJF99_12945 PF13439 Glycosyltransferase Family 4 LJF99_12950 PF01370 NAD dependent epimerase/dehydratase family LJF99_12955 PF08360 QacR-like protein, C-terminal region LJF99_12955 PF00440 Bacterial regulatory proteins, tetR family LJF99_12960 PF00155 Aminotransferase class I and II LJF99_12965 PF08240 Alcohol dehydrogenase GroES-like domain LJF99_12965 PF00107 Zinc-binding dehydrogenase LJF99_12980 PF00580 UvrD/REP helicase N-terminal domain LJF99_12980 PF13361 UvrD-like helicase C-terminal domain LJF99_12985 PF00266 Aminotransferase class-V LJF99_12990 PF02657 Fe-S metabolism associated domain LJF99_12995 PF00899 ThiF family LJF99_13025 PF12724 Flavodoxin domain LJF99_13030 PF02386 Cation transport protein LJF99_13035 PF09186 Domain of unknown function (DUF1949) LJF99_13035 PF01205 Uncharacterized protein family UPF0029 LJF99_13040 PF00557 Metallopeptidase family M24 LJF99_13045 PF00501 AMP-binding enzyme LJF99_13045 PF13193 AMP-binding enzyme C-terminal domain LJF99_13050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LJF99_13050 PF00378 Enoyl-CoA hydratase/isomerase LJF99_13050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LJF99_13055 PF00108 Thiolase, N-terminal domain LJF99_13055 PF02803 Thiolase, C-terminal domain LJF99_13060 PF00486 Transcriptional regulatory protein, C terminal LJF99_13060 PF00072 Response regulator receiver domain LJF99_13065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_13065 PF00672 HAMP domain LJF99_13065 PF00512 His Kinase A (phospho-acceptor) domain LJF99_13070 PF01547 Bacterial extracellular solute-binding protein LJF99_13080 PF01206 Sulfurtransferase TusA LJF99_13085 PF01042 Endoribonuclease L-PSP LJF99_13090 PF13488 Glycine zipper LJF99_13090 PF00691 OmpA family LJF99_13095 PF03352 Methyladenine glycosylase LJF99_13100 PF02091 Glycyl-tRNA synthetase alpha subunit LJF99_13105 PF05746 DALR anticodon binding domain LJF99_13105 PF02092 Glycyl-tRNA synthetase beta subunit LJF99_13110 PF11008 Protein of unknown function (DUF2846) LJF99_13115 PF01202 Shikimate kinase LJF99_13125 PF00990 Diguanylate cyclase, GGDEF domain LJF99_13125 PF00563 EAL domain LJF99_13125 PF13426 PAS domain LJF99_13130 PF03545 Yersinia virulence determinant (YopE) LJF99_13130 PF03496 ADP-ribosyltransferase exoenzyme LJF99_13135 PF05932 Tir chaperone protein (CesT) family LJF99_13140 PF03222 Tryptophan/tyrosine permease family LJF99_13145 PF12801 4Fe-4S binding domain LJF99_13155 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_13155 PF18113 Rubredoxin binding C-terminal domain LJF99_13160 PF00258 Flavodoxin LJF99_13160 PF00753 Metallo-beta-lactamase superfamily LJF99_13160 PF00301 Rubredoxin LJF99_13165 PF01590 GAF domain LJF99_13165 PF00158 Sigma-54 interaction domain LJF99_13170 PF07702 UTRA domain LJF99_13170 PF00392 Bacterial regulatory proteins, gntR family LJF99_13175 PF02378 Phosphotransferase system, EIIC LJF99_13175 PF00367 phosphotransferase system, EIIB LJF99_13180 PF11975 Family 4 glycosyl hydrolase C-terminal domain LJF99_13180 PF02056 Family 4 glycosyl hydrolase LJF99_13185 PF00356 Bacterial regulatory proteins, lacI family LJF99_13190 PF13458 Periplasmic binding protein LJF99_13195 PF02653 Branched-chain amino acid transport system / permease component LJF99_13200 PF11862 Domain of unknown function (DUF3382) LJF99_13200 PF02653 Branched-chain amino acid transport system / permease component LJF99_13205 PF12399 Branched-chain amino acid ATP-binding cassette transporter LJF99_13205 PF00005 ABC transporter LJF99_13210 PF00005 ABC transporter LJF99_13220 PF01810 LysE type translocator LJF99_13225 PF00581 Rhodanese-like domain LJF99_13230 PF01694 Rhomboid family LJF99_13230 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LJF99_13235 PF12262 Bacterial virulence factor lipase N-terminal LJF99_13240 PF04380 Membrane fusogenic activity LJF99_13245 PF00175 Oxidoreductase NAD-binding domain LJF99_13250 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LJF99_13260 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_13260 PF07498 Rho termination factor, N-terminal domain LJF99_13260 PF07497 Rho termination factor, RNA-binding domain LJF99_13265 PF00085 Thioredoxin LJF99_13270 PF00271 Helicase conserved C-terminal domain LJF99_13270 PF00270 DEAD/DEAH box helicase LJF99_13275 PF02541 Ppx/GppA phosphatase family LJF99_13285 PF04445 Putative SAM-dependent methyltransferase LJF99_13290 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_13295 PF00563 EAL domain LJF99_13295 PF00990 Diguanylate cyclase, GGDEF domain LJF99_13295 PF03707 Bacterial signalling protein N terminal repeat LJF99_13300 PF01432 Peptidase family M3 LJF99_13305 PF00490 Delta-aminolevulinic acid dehydratase LJF99_13310 PF01026 TatD related DNase LJF99_13315 PF00902 Sec-independent protein translocase protein (TatC) LJF99_13320 PF02416 mttA/Hcf106 family LJF99_13325 PF02416 mttA/Hcf106 family LJF99_13330 PF03109 ABC1 family LJF99_13335 PF02036 SCP-2 sterol transfer family LJF99_13340 PF01209 ubiE/COQ5 methyltransferase family LJF99_13345 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LJF99_13390 PF03544 Gram-negative bacterial TonB protein C-terminal LJF99_13395 PF02472 Biopolymer transport protein ExbD/TolR LJF99_13400 PF01618 MotA/TolQ/ExbB proton channel family LJF99_13405 PF01618 MotA/TolQ/ExbB proton channel family LJF99_13415 PF03472 Autoinducer binding domain LJF99_13415 PF00196 Bacterial regulatory proteins, luxR family LJF99_13430 PF02384 N-6 DNA Methylase LJF99_13435 PF13592 Winged helix-turn helix LJF99_13435 PF13358 DDE superfamily endonuclease LJF99_13440 PF01420 Type I restriction modification DNA specificity domain LJF99_13445 PF01695 IstB-like ATP binding protein LJF99_13450 PF00665 Integrase core domain LJF99_13455 PF01420 Type I restriction modification DNA specificity domain LJF99_13475 PF06527 TniQ LJF99_13475 PF15978 Tn7-like transposition protein D LJF99_13485 PF06527 TniQ LJF99_13485 PF15978 Tn7-like transposition protein D LJF99_13490 PF13401 AAA domain LJF99_13490 PF11426 Tn7 transposition regulator TnsC LJF99_13495 PF13401 AAA domain LJF99_13495 PF11426 Tn7 transposition regulator TnsC LJF99_13500 PF00665 Integrase core domain LJF99_13505 PF08721 TnsA endonuclease C terminal LJF99_13505 PF08722 TnsA endonuclease N terminal LJF99_13510 PF01380 SIS domain LJF99_13515 PF00455 DeoR C terminal sensor domain LJF99_13515 PF08220 DeoR-like helix-turn-helix domain LJF99_13520 PF00072 Response regulator receiver domain LJF99_13520 PF00486 Transcriptional regulatory protein, C terminal LJF99_13525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_13525 PF00672 HAMP domain LJF99_13525 PF00512 His Kinase A (phospho-acceptor) domain LJF99_13535 PF06123 Inner membrane protein CreD LJF99_13540 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_13540 PF14602 Hexapeptide repeat of succinyl-transferase LJF99_13540 PF12804 MobA-like NTP transferase domain LJF99_13545 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LJF99_13545 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LJF99_13550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_13550 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJF99_13555 PF00231 ATP synthase LJF99_13560 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_13560 PF00306 ATP synthase alpha/beta chain, C terminal domain LJF99_13560 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJF99_13565 PF00213 ATP synthase delta (OSCP) subunit LJF99_13570 PF00430 ATP synthase B/B' CF(0) LJF99_13575 PF00137 ATP synthase subunit C LJF99_13580 PF00119 ATP synthase A chain LJF99_13585 PF03899 ATP synthase I chain LJF99_13590 PF17762 HTH domain found in ParB protein LJF99_13590 PF02195 ParB-like nuclease domain LJF99_13595 PF13614 AAA domain LJF99_13600 PF02527 rRNA small subunit methyltransferase G LJF99_13605 PF01134 Glucose inhibited division protein A LJF99_13605 PF13932 GidA associated domain LJF99_13610 PF00258 Flavodoxin LJF99_13615 PF00593 TonB dependent receptor LJF99_13615 PF07715 TonB-dependent Receptor Plug Domain LJF99_13620 PF00005 ABC transporter LJF99_13625 PF00005 ABC transporter LJF99_13630 PF01497 Periplasmic binding protein LJF99_13635 PF01032 FecCD transport family LJF99_13640 PF07715 TonB-dependent Receptor Plug Domain LJF99_13640 PF00593 TonB dependent receptor LJF99_13645 PF01497 Periplasmic binding protein LJF99_13650 PF00005 ABC transporter LJF99_13655 PF01032 FecCD transport family LJF99_13660 PF01032 FecCD transport family LJF99_13665 PF00005 ABC transporter LJF99_13670 PF00664 ABC transporter transmembrane region LJF99_13670 PF08021 Siderophore-interacting FAD-binding domain LJF99_13670 PF04954 Siderophore-interacting protein LJF99_13670 PF00005 ABC transporter LJF99_13680 PF00550 Phosphopantetheine attachment site LJF99_13680 PF13193 AMP-binding enzyme C-terminal domain LJF99_13680 PF00501 AMP-binding enzyme LJF99_13680 PF00668 Condensation domain LJF99_13680 PF00975 Thioesterase domain LJF99_13685 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) LJF99_13690 PF00550 Phosphopantetheine attachment site LJF99_13690 PF00668 Condensation domain LJF99_13690 PF00501 AMP-binding enzyme LJF99_13700 PF00282 Pyridoxal-dependent decarboxylase conserved domain LJF99_13705 PF10396 GTP-binding protein TrmE N-terminus LJF99_13705 PF12631 MnmE helical domain LJF99_13705 PF01926 50S ribosome-binding GTPase LJF99_13710 PF14849 YidC periplasmic domain LJF99_13710 PF02096 60Kd inner membrane protein LJF99_13715 PF01809 Putative membrane protein insertion efficiency factor LJF99_13720 PF00825 Ribonuclease P LJF99_13725 PF00468 Ribosomal protein L34 LJF99_13730 PF00005 ABC transporter LJF99_13735 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_13740 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_13745 PF11638 DnaA N-terminal domain LJF99_13745 PF00308 Bacterial dnaA protein LJF99_13745 PF08299 Bacterial dnaA protein helix-turn-helix LJF99_13750 PF00712 DNA polymerase III beta subunit, N-terminal domain LJF99_13750 PF02767 DNA polymerase III beta subunit, central domain LJF99_13750 PF02768 DNA polymerase III beta subunit, C-terminal domain LJF99_13755 PF02463 RecF/RecN/SMC N terminal domain LJF99_13760 PF18053 DNA gyrase B subunit insert domain LJF99_13760 PF00204 DNA gyrase B LJF99_13760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_13760 PF01751 Toprim domain LJF99_13760 PF00986 DNA gyrase B subunit, carboxyl terminus LJF99_13775 PF08279 HTH domain LJF99_13775 PF13280 WYL domain LJF99_13780 PF00011 Hsp20/alpha crystallin family LJF99_13785 PF00011 Hsp20/alpha crystallin family LJF99_13805 PF00155 Aminotransferase class I and II LJF99_13830 PF00072 Response regulator receiver domain LJF99_13830 PF00486 Transcriptional regulatory protein, C terminal LJF99_13835 PF13492 GAF domain LJF99_13835 PF13493 Domain of unknown function (DUF4118) LJF99_13835 PF02702 Osmosensitive K+ channel His kinase sensor domain LJF99_13835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_13835 PF00512 His Kinase A (phospho-acceptor) domain LJF99_13840 PF02669 K+-transporting ATPase, c chain LJF99_13850 PF03814 Potassium-transporting ATPase A subunit LJF99_13855 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_13855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LJF99_13860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_13860 PF00512 His Kinase A (phospho-acceptor) domain LJF99_13860 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_13865 PF00873 AcrB/AcrD/AcrF family LJF99_13870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_13875 PF00440 Bacterial regulatory proteins, tetR family LJF99_13910 PF12146 Serine aminopeptidase, S33 LJF99_13915 PF00588 SpoU rRNA Methylase family LJF99_13915 PF12105 SpoU, rRNA methylase, C-terminal LJF99_13920 PF13291 ACT domain LJF99_13920 PF04607 Region found in RelA / SpoT proteins LJF99_13920 PF02824 TGS domain LJF99_13925 PF01192 RNA polymerase Rpb6 LJF99_13930 PF00625 Guanylate kinase LJF99_13935 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LJF99_13950 PF00892 EamA-like transporter family LJF99_13970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_13970 PF03466 LysR substrate binding domain LJF99_13975 PF00579 tRNA synthetases class I (W and Y) LJF99_13980 PF00582 Universal stress protein family LJF99_13985 PF07055 Enoyl reductase FAD binding domain LJF99_13985 PF12241 Trans-2-enoyl-CoA reductase catalytic region LJF99_13985 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LJF99_13990 PF08448 PAS fold LJF99_13990 PF00990 Diguanylate cyclase, GGDEF domain LJF99_14000 PF00210 Ferritin-like domain LJF99_14010 PF01810 LysE type translocator LJF99_14035 PF15976 CS1-pili formation C-terminal LJF99_14035 PF16967 E-set like domain LJF99_14055 PF00665 Integrase core domain LJF99_14060 PF01695 IstB-like ATP binding protein LJF99_14065 PF18649 EcpB C-terminal domain LJF99_14070 PF16449 Fimbrillin MatB LJF99_14075 PF00072 Response regulator receiver domain LJF99_14075 PF00196 Bacterial regulatory proteins, luxR family LJF99_14080 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_14080 PF01627 Hpt domain LJF99_14080 PF00989 PAS fold LJF99_14080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14080 PF00512 His Kinase A (phospho-acceptor) domain LJF99_14080 PF00072 Response regulator receiver domain LJF99_14090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14090 PF00512 His Kinase A (phospho-acceptor) domain LJF99_14090 PF01627 Hpt domain LJF99_14090 PF00989 PAS fold LJF99_14090 PF00072 Response regulator receiver domain LJF99_14090 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_14100 PF07694 5TMR of 5TMR-LYT LJF99_14100 PF06580 Histidine kinase LJF99_14100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14105 PF00072 Response regulator receiver domain LJF99_14105 PF04397 LytTr DNA-binding domain LJF99_14110 PF07690 Major Facilitator Superfamily LJF99_14115 PF02222 ATP-grasp domain LJF99_14115 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LJF99_14120 PF00731 AIR carboxylase LJF99_14135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_14135 PF03466 LysR substrate binding domain LJF99_14140 PF07715 TonB-dependent Receptor Plug Domain LJF99_14140 PF00593 TonB dependent receptor LJF99_14145 PF01177 Asp/Glu/Hydantoin racemase LJF99_14175 PF13380 CoA binding domain LJF99_14175 PF00583 Acetyltransferase (GNAT) family LJF99_14175 PF13607 Succinyl-CoA ligase like flavodoxin domain LJF99_14190 PF03466 LysR substrate binding domain LJF99_14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_14195 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LJF99_14195 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LJF99_14200 PF00342 Phosphoglucose isomerase LJF99_14210 PF00924 Mechanosensitive ion channel LJF99_14210 PF05552 Conserved TM helix LJF99_14215 PF00440 Bacterial regulatory proteins, tetR family LJF99_14220 PF00692 dUTPase LJF99_14225 PF04127 DNA / pantothenate metabolism flavoprotein LJF99_14225 PF02441 Flavoprotein LJF99_14230 PF04002 RadC-like JAB domain LJF99_14235 PF00830 Ribosomal L28 family LJF99_14240 PF00471 Ribosomal protein L33 LJF99_14250 PF06827 Zinc finger found in FPG and IleRS LJF99_14250 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LJF99_14250 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LJF99_14255 PF04393 Protein of unknown function (DUF535) LJF99_14260 PF01467 Cytidylyltransferase-like LJF99_14265 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LJF99_14270 PF00535 Glycosyl transferase family 2 LJF99_14275 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LJF99_14280 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LJF99_14285 PF03611 PTS system sugar-specific permease component LJF99_14295 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJF99_14300 PF00356 Bacterial regulatory proteins, lacI family LJF99_14300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJF99_14320 PF03748 Flagellar basal body-associated protein FliL LJF99_14325 PF04345 Chorismate lyase LJF99_14330 PF01040 UbiA prenyltransferase family LJF99_14335 PF01553 Acyltransferase LJF99_14340 PF00717 Peptidase S24-like LJF99_14340 PF01726 LexA DNA binding domain LJF99_14350 PF02630 SCO1/SenC LJF99_14360 PF00588 SpoU rRNA Methylase family LJF99_14365 PF16527 Two-component sensor protein CpxA, periplasmic domain LJF99_14365 PF00672 HAMP domain LJF99_14365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14365 PF00512 His Kinase A (phospho-acceptor) domain LJF99_14370 PF00072 Response regulator receiver domain LJF99_14370 PF00486 Transcriptional regulatory protein, C terminal LJF99_14375 PF16916 Dimerisation domain of Zinc Transporter LJF99_14375 PF01545 Cation efflux family LJF99_14380 PF06426 Serine acetyltransferase, N-terminal LJF99_14380 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_14390 PF06005 Cell division protein ZapB LJF99_14400 PF00476 DNA polymerase family A LJF99_14400 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LJF99_14400 PF01367 5'-3' exonuclease, C-terminal SAM fold LJF99_14400 PF01612 3'-5' exonuclease LJF99_14405 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_14455 PF13593 SBF-like CPA transporter family (DUF4137) LJF99_14460 PF03781 Sulfatase-modifying factor enzyme 1 LJF99_14460 PF12867 DinB superfamily LJF99_14470 PF00756 Putative esterase LJF99_14475 PF00107 Zinc-binding dehydrogenase LJF99_14475 PF08240 Alcohol dehydrogenase GroES-like domain LJF99_14480 PF03466 LysR substrate binding domain LJF99_14480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_14485 PF02653 Branched-chain amino acid transport system / permease component LJF99_14490 PF02653 Branched-chain amino acid transport system / permease component LJF99_14495 PF00005 ABC transporter LJF99_14505 PF02608 ABC transporter substrate-binding protein PnrA-like LJF99_14510 PF00580 UvrD/REP helicase N-terminal domain LJF99_14510 PF13361 UvrD-like helicase C-terminal domain LJF99_14550 PF04972 BON domain LJF99_14570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_14570 PF03466 LysR substrate binding domain LJF99_14575 PF01810 LysE type translocator LJF99_14580 PF04143 Sulphur transport LJF99_14585 PF00689 Cation transporting ATPase, C-terminus LJF99_14585 PF00690 Cation transporter/ATPase, N-terminus LJF99_14590 PF01810 LysE type translocator LJF99_14595 PF12833 Helix-turn-helix domain LJF99_14600 PF00892 EamA-like transporter family LJF99_14610 PF00171 Aldehyde dehydrogenase family LJF99_14615 PF01381 Helix-turn-helix LJF99_14620 PF00202 Aminotransferase class-III LJF99_14625 PF00171 Aldehyde dehydrogenase family LJF99_14630 PF00117 Glutamine amidotransferase class-I LJF99_14630 PF00958 GMP synthase C terminal domain LJF99_14630 PF02540 NAD synthase LJF99_14635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LJF99_14635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LJF99_14640 PF00294 pfkB family carbohydrate kinase LJF99_14645 PF02082 Transcriptional regulator LJF99_14660 PF02646 RmuC family LJF99_14665 PF02386 Cation transport protein LJF99_14670 PF02080 TrkA-C domain LJF99_14670 PF02254 TrkA-N domain LJF99_14675 PF01189 16S rRNA methyltransferase RsmB/F LJF99_14675 PF01029 NusB family LJF99_14680 PF00551 Formyl transferase LJF99_14680 PF02911 Formyl transferase, C-terminal domain LJF99_14685 PF01327 Polypeptide deformylase LJF99_14690 PF01476 LysM domain LJF99_14695 PF02481 DNA recombination-mediator protein A LJF99_14695 PF17782 DprA winged helix domain LJF99_14700 PF04361 Protein of unknown function (DUF494) LJF99_14705 PF01396 Topoisomerase DNA binding C4 zinc finger LJF99_14710 PF00731 AIR carboxylase LJF99_14715 PF01300 Telomere recombination LJF99_14720 PF01218 Coproporphyrinogen III oxidase LJF99_14725 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LJF99_14725 PF01488 Shikimate / quinate 5-dehydrogenase LJF99_14725 PF08501 Shikimate dehydrogenase substrate binding domain LJF99_14730 PF07369 Protein of unknown function (DUF1488) LJF99_14735 PF01926 50S ribosome-binding GTPase LJF99_14740 PF00034 Cytochrome c LJF99_14745 PF04220 Der GTPase activator (YihI) LJF99_14750 PF10675 Protein of unknown function (DUF2489) LJF99_14755 PF04055 Radical SAM superfamily LJF99_14755 PF06969 HemN C-terminal domain LJF99_14760 PF00962 Adenosine/AMP deaminase LJF99_14765 PF00158 Sigma-54 interaction domain LJF99_14765 PF02954 Bacterial regulatory protein, Fis family LJF99_14765 PF00072 Response regulator receiver domain LJF99_14770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14770 PF00989 PAS fold LJF99_14770 PF00512 His Kinase A (phospho-acceptor) domain LJF99_14780 PF00120 Glutamine synthetase, catalytic domain LJF99_14780 PF03951 Glutamine synthetase, beta-Grasp domain LJF99_14785 PF03144 Elongation factor Tu domain 2 LJF99_14785 PF00679 Elongation factor G C-terminus LJF99_14785 PF00009 Elongation factor Tu GTP binding domain LJF99_14790 PF03631 Virulence factor BrkB LJF99_14805 PF09500 Putative thioesterase (yiiD_Cterm) LJF99_14805 PF00583 Acetyltransferase (GNAT) family LJF99_14815 PF00271 Helicase conserved C-terminal domain LJF99_14815 PF00270 DEAD/DEAH box helicase LJF99_14815 PF17191 RecG wedge domain LJF99_14820 PF13091 PLD-like domain LJF99_14825 PF02447 GntP family permease LJF99_14830 PF01202 Shikimate kinase LJF99_14835 PF00920 Dehydratase family LJF99_14840 PF01081 KDPG and KHG aldolase LJF99_14845 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LJF99_14845 PF00356 Bacterial regulatory proteins, lacI family LJF99_14855 PF01551 Peptidase family M23 LJF99_14860 PF01676 Metalloenzyme superfamily LJF99_14860 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LJF99_14865 PF00581 Rhodanese-like domain LJF99_14870 PF02556 Preprotein translocase subunit SecB LJF99_14875 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LJF99_14875 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LJF99_14880 PF01106 NifU-like domain LJF99_14880 PF01521 Iron-sulphur cluster biosynthesis LJF99_14885 PF00156 Phosphoribosyl transferase domain LJF99_14890 PF00561 alpha/beta hydrolase fold LJF99_14910 PF16921 Tex protein YqgF-like domain LJF99_14910 PF09371 Tex-like protein N-terminal domain LJF99_14910 PF17674 HHH domain LJF99_14910 PF00575 S1 RNA binding domain LJF99_14915 PF03449 Transcription elongation factor, N-terminal LJF99_14915 PF01272 Transcription elongation factor, GreA/GreB, C-term LJF99_14920 PF00072 Response regulator receiver domain LJF99_14920 PF00486 Transcriptional regulatory protein, C terminal LJF99_14925 PF00672 HAMP domain LJF99_14925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_14925 PF00512 His Kinase A (phospho-acceptor) domain LJF99_14935 PF00338 Ribosomal protein S10p/S20e LJF99_14940 PF00297 Ribosomal protein L3 LJF99_14945 PF00573 Ribosomal protein L4/L1 family LJF99_14950 PF00276 Ribosomal protein L23 LJF99_14955 PF00181 Ribosomal Proteins L2, RNA binding domain LJF99_14955 PF03947 Ribosomal Proteins L2, C-terminal domain LJF99_14960 PF00203 Ribosomal protein S19 LJF99_14965 PF00237 Ribosomal protein L22p/L17e LJF99_14970 PF07650 KH domain LJF99_14970 PF00189 Ribosomal protein S3, C-terminal domain LJF99_14975 PF00252 Ribosomal protein L16p/L10e LJF99_14980 PF00831 Ribosomal L29 protein LJF99_14985 PF00366 Ribosomal protein S17 LJF99_14990 PF00238 Ribosomal protein L14p/L23e LJF99_14995 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LJF99_15000 PF00281 Ribosomal protein L5 LJF99_15000 PF00673 ribosomal L5P family C-terminus LJF99_15005 PF00253 Ribosomal protein S14p/S29e LJF99_15010 PF00410 Ribosomal protein S8 LJF99_15015 PF00347 Ribosomal protein L6 LJF99_15020 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LJF99_15025 PF03719 Ribosomal protein S5, C-terminal domain LJF99_15025 PF00333 Ribosomal protein S5, N-terminal domain LJF99_15030 PF00327 Ribosomal protein L30p/L7e LJF99_15035 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LJF99_15040 PF00344 SecY translocase LJF99_15045 PF00444 Ribosomal protein L36 LJF99_15050 PF00416 Ribosomal protein S13/S18 LJF99_15055 PF00411 Ribosomal protein S11 LJF99_15060 PF00163 Ribosomal protein S4/S9 N-terminal domain LJF99_15060 PF01479 S4 domain LJF99_15065 PF01000 RNA polymerase Rpb3/RpoA insert domain LJF99_15065 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LJF99_15065 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LJF99_15070 PF01196 Ribosomal protein L17 LJF99_15120 PF01695 IstB-like ATP binding protein LJF99_15125 PF00665 Integrase core domain LJF99_15135 PF02733 Dak1 domain LJF99_15140 PF02734 DAK2 domain LJF99_15145 PF00381 PTS HPr component phosphorylation site LJF99_15145 PF00391 PEP-utilising enzyme, mobile domain LJF99_15145 PF03610 PTS system fructose IIA component LJF99_15145 PF05524 PEP-utilising enzyme, N-terminal LJF99_15150 PF00465 Iron-containing alcohol dehydrogenase LJF99_15155 PF02954 Bacterial regulatory protein, Fis family LJF99_15155 PF00989 PAS fold LJF99_15155 PF00158 Sigma-54 interaction domain LJF99_15160 PF01594 AI-2E family transporter LJF99_15165 PF00293 NUDIX domain LJF99_15190 PF00199 Catalase LJF99_15190 PF06628 Catalase-related immune-responsive LJF99_15215 PF00990 Diguanylate cyclase, GGDEF domain LJF99_15225 PF00005 ABC transporter LJF99_15225 PF08402 TOBE domain LJF99_15235 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_15250 PF00392 Bacterial regulatory proteins, gntR family LJF99_15250 PF07702 UTRA domain LJF99_15270 PF17954 Quercetinase C-terminal cupin domain LJF99_15270 PF02678 Pirin LJF99_15275 PF07681 DoxX LJF99_15280 PF17946 RecC C-terminal domain LJF99_15285 PF12705 PD-(D/E)XK nuclease superfamily LJF99_15285 PF00580 UvrD/REP helicase N-terminal domain LJF99_15285 PF13361 UvrD-like helicase C-terminal domain LJF99_15290 PF13538 UvrD-like helicase C-terminal domain LJF99_15300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_15315 PF00909 Ammonium Transporter Family LJF99_15320 PF00543 Nitrogen regulatory protein P-II LJF99_15325 PF00072 Response regulator receiver domain LJF99_15325 PF00990 Diguanylate cyclase, GGDEF domain LJF99_15335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_15335 PF00672 HAMP domain LJF99_15335 PF02743 Cache domain LJF99_15355 PF00072 Response regulator receiver domain LJF99_15355 PF00486 Transcriptional regulatory protein, C terminal LJF99_15360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_15360 PF00672 HAMP domain LJF99_15360 PF00512 His Kinase A (phospho-acceptor) domain LJF99_15365 PF00990 Diguanylate cyclase, GGDEF domain LJF99_15375 PF00313 'Cold-shock' DNA-binding domain LJF99_15380 PF08448 PAS fold LJF99_15380 PF00990 Diguanylate cyclase, GGDEF domain LJF99_15385 PF00005 ABC transporter LJF99_15385 PF17755 UvrA DNA-binding domain LJF99_15385 PF17760 UvrA interaction domain LJF99_15390 PF00196 Bacterial regulatory proteins, luxR family LJF99_15395 PF00436 Single-strand binding protein family LJF99_15405 PF01545 Cation efflux family LJF99_15405 PF16916 Dimerisation domain of Zinc Transporter LJF99_15435 PF02254 TrkA-N domain LJF99_15435 PF00999 Sodium/hydrogen exchanger family LJF99_15440 PF02525 Flavodoxin-like fold LJF99_15455 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LJF99_15455 PF00326 Prolyl oligopeptidase family LJF99_15475 PF07947 YhhN family LJF99_15480 PF07690 Major Facilitator Superfamily LJF99_15485 PF13533 Biotin-lipoyl like LJF99_15500 PF00375 Sodium:dicarboxylate symporter family LJF99_15505 PF10678 Protein of unknown function (DUF2492) LJF99_15510 PF01914 MarC family integral membrane protein LJF99_15515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_15515 PF03466 LysR substrate binding domain LJF99_15520 PF02416 mttA/Hcf106 family LJF99_15530 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_15530 PF01464 Transglycosylase SLT domain LJF99_15540 PF13091 PLD-like domain LJF99_15550 PF00440 Bacterial regulatory proteins, tetR family LJF99_15570 PF00448 SRP54-type protein, GTPase domain LJF99_15570 PF02881 SRP54-type protein, helical bundle domain LJF99_15575 PF00005 ABC transporter LJF99_15580 PF18075 FtsX extracellular domain LJF99_15585 PF00140 Sigma-70 factor, region 1.2 LJF99_15585 PF04542 Sigma-70 region 2 LJF99_15585 PF04545 Sigma-70, region 4 LJF99_15590 PF00484 Carbonic anhydrase LJF99_15595 PF00392 Bacterial regulatory proteins, gntR family LJF99_15595 PF07702 UTRA domain LJF99_15600 PF01979 Amidohydrolase family LJF99_15605 PF00491 Arginase family LJF99_15610 PF01175 Urocanase Rossmann-like domain LJF99_15610 PF17392 Urocanase C-terminal domain LJF99_15610 PF17391 Urocanase N-terminal domain LJF99_15615 PF00221 Aromatic amino acid lyase LJF99_15620 PF01699 Sodium/calcium exchanger protein LJF99_15630 PF17157 Gammaproteobacterial periplasmic sensor domain LJF99_15630 PF00990 Diguanylate cyclase, GGDEF domain LJF99_15630 PF00563 EAL domain LJF99_15660 PF00263 Bacterial type II and III secretion system protein LJF99_15660 PF03958 Bacterial type II/III secretion system short domain LJF99_15695 PF04085 rod shape-determining protein MreC LJF99_15700 PF04093 rod shape-determining protein MreD LJF99_15705 PF02545 Maf-like protein LJF99_15710 PF10150 Ribonuclease E/G family LJF99_15710 PF00575 S1 RNA binding domain LJF99_15715 PF13502 AsmA-like C-terminal region LJF99_15715 PF13116 Protein of unknown function LJF99_15725 PF00795 Carbon-nitrogen hydrolase LJF99_15730 PF01523 Putative modulator of DNA gyrase LJF99_15740 PF01914 MarC family integral membrane protein LJF99_15755 PF00072 Response regulator receiver domain LJF99_15760 PF01627 Hpt domain LJF99_15760 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LJF99_15760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_15760 PF00672 HAMP domain LJF99_15760 PF00072 Response regulator receiver domain LJF99_15760 PF00512 His Kinase A (phospho-acceptor) domain LJF99_15765 PF13581 Histidine kinase-like ATPase domain LJF99_15770 PF08678 Rsbr N terminal LJF99_15770 PF01740 STAS domain LJF99_15775 PF08447 PAS fold LJF99_15775 PF13426 PAS domain LJF99_15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_15780 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LJF99_15790 PF08668 HDOD domain LJF99_15805 PF00999 Sodium/hydrogen exchanger family LJF99_15810 PF00809 Pterin binding enzyme LJF99_15810 PF02965 Vitamin B12 dependent methionine synthase, activation domain LJF99_15810 PF02574 Homocysteine S-methyltransferase LJF99_15810 PF02310 B12 binding domain LJF99_15810 PF02607 B12 binding domain LJF99_15815 PF08443 RimK-like ATP-grasp domain LJF99_15815 PF18030 RimK PreATP-grasp domain LJF99_15820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_15825 PF00072 Response regulator receiver domain LJF99_15825 PF00486 Transcriptional regulatory protein, C terminal LJF99_15840 PF01117 Aerolysin toxin LJF99_15840 PF03440 Aerolysin/Pertussis toxin (APT) domain LJF99_15845 PF13667 ThiC-associated domain LJF99_15845 PF01964 Radical SAM ThiC family LJF99_15850 PF02581 Thiamine monophosphate synthase LJF99_15855 PF00899 ThiF family LJF99_15865 PF05690 Thiazole biosynthesis protein ThiG LJF99_15870 PF06968 Biotin and Thiamin Synthesis associated domain LJF99_15870 PF04055 Radical SAM superfamily LJF99_15895 PF00132 Bacterial transferase hexapeptide (six repeats) LJF99_15900 PF13036 Peptidoglycan-synthase activator LpoB LJF99_15920 PF06055 Exopolysaccharide synthesis, ExoD LJF99_15930 PF08803 Putative mono-oxygenase ydhR LJF99_15935 PF01638 HxlR-like helix-turn-helix LJF99_15960 PF07715 TonB-dependent Receptor Plug Domain LJF99_15960 PF00593 TonB dependent receptor LJF99_15975 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LJF99_15990 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LJF99_15995 PF02602 Uroporphyrinogen-III synthase HemD LJF99_16000 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LJF99_16000 PF03900 Porphobilinogen deaminase, C-terminal domain LJF99_16005 PF12633 Adenylate cyclase NT domain LJF99_16005 PF01295 Adenylate cyclase, class-I LJF99_16015 PF13358 DDE superfamily endonuclease LJF99_16015 PF13592 Winged helix-turn helix LJF99_16025 PF01491 Frataxin-like domain LJF99_16035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJF99_16035 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LJF99_16040 PF01678 Diaminopimelate epimerase LJF99_16050 PF02899 Phage integrase, N-terminal SAM-like domain LJF99_16050 PF00589 Phage integrase family LJF99_16055 PF13419 Haloacid dehalogenase-like hydrolase LJF99_16065 PF00924 Mechanosensitive ion channel LJF99_16075 PF07722 Peptidase C26 LJF99_16095 PF00005 ABC transporter LJF99_16105 PF00994 Probable molybdopterin binding domain LJF99_16105 PF02464 Competence-damaged protein LJF99_16110 PF01966 HD domain LJF99_16110 PF00013 KH domain LJF99_16110 PF12072 Domain of unknown function (DUF3552) LJF99_16115 PF04204 Homoserine O-succinyltransferase LJF99_16125 PF01037 Lrp/AsnC ligand binding domain LJF99_16130 PF00884 Sulfatase LJF99_16145 PF00128 Alpha amylase, catalytic domain LJF99_16145 PF02903 Alpha amylase, N-terminal ig-like domain LJF99_16145 PF16657 Maltogenic Amylase, C-terminal domain LJF99_16150 PF02308 MgtC family LJF99_16170 PF00106 short chain dehydrogenase LJF99_16175 PF03577 Peptidase family C69 LJF99_16190 PF00465 Iron-containing alcohol dehydrogenase LJF99_16200 PF01053 Cys/Met metabolism PLP-dependent enzyme LJF99_16210 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_16210 PF12793 Sugar transport-related sRNA regulator N-term LJF99_16215 PF00141 Peroxidase LJF99_16230 PF03280 Proteobacterial lipase chaperone protein LJF99_16235 PF00561 alpha/beta hydrolase fold LJF99_16245 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LJF99_16245 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LJF99_16250 PF02698 DUF218 domain LJF99_16255 PF01752 Collagenase LJF99_16255 PF08453 Peptidase family M9 N-terminal LJF99_16265 PF00419 Fimbrial protein LJF99_16275 PF00577 Outer membrane usher protein LJF99_16275 PF13954 PapC N-terminal domain LJF99_16275 PF13953 PapC C-terminal domain LJF99_16280 PF02753 Pili assembly chaperone PapD, C-terminal domain LJF99_16280 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain LJF99_16285 PF00419 Fimbrial protein LJF99_16290 PF00419 Fimbrial protein LJF99_16300 PF00072 Response regulator receiver domain LJF99_16300 PF00486 Transcriptional regulatory protein, C terminal LJF99_16305 PF00501 AMP-binding enzyme LJF99_16310 PF13378 Enolase C-terminal domain-like LJF99_16315 PF00378 Enoyl-CoA hydratase/isomerase LJF99_16320 PF12697 Alpha/beta hydrolase family LJF99_16325 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJF99_16325 PF16582 Middle domain of thiamine pyrophosphate LJF99_16325 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LJF99_16330 PF00425 chorismate binding enzyme LJF99_16335 PF01040 UbiA prenyltransferase family LJF99_16365 PF03880 DbpA RNA binding domain LJF99_16365 PF00270 DEAD/DEAH box helicase LJF99_16365 PF00271 Helicase conserved C-terminal domain LJF99_16370 PF01773 Na+ dependent nucleoside transporter N-terminus LJF99_16370 PF07662 Na+ dependent nucleoside transporter C-terminus LJF99_16370 PF07670 Nucleoside recognition LJF99_16375 PF04307 LexA-binding, inner membrane-associated putative hydrolase LJF99_16390 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LJF99_16395 PF01544 CorA-like Mg2+ transporter protein LJF99_16410 PF00226 DnaJ domain LJF99_16410 PF01556 DnaJ C terminal domain LJF99_16410 PF00684 DnaJ central domain LJF99_16415 PF03471 Transporter associated domain LJF99_16415 PF00999 Sodium/hydrogen exchanger family LJF99_16415 PF02080 TrkA-C domain LJF99_16420 PF05068 Mannitol repressor LJF99_16425 PF01232 Mannitol dehydrogenase Rossmann domain LJF99_16425 PF08125 Mannitol dehydrogenase C-terminal domain LJF99_16430 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJF99_16430 PF02378 Phosphotransferase system, EIIC LJF99_16430 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJF99_16445 PF17876 Cold shock domain LJF99_16445 PF00773 RNB domain LJF99_16445 PF08206 Ribonuclease B OB domain LJF99_16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_16450 PF03466 LysR substrate binding domain LJF99_16455 PF00765 Autoinducer synthase LJF99_16460 PF03472 Autoinducer binding domain LJF99_16460 PF00196 Bacterial regulatory proteins, luxR family LJF99_16465 PF01810 LysE type translocator LJF99_16470 PF02872 5'-nucleotidase, C-terminal domain LJF99_16470 PF00149 Calcineurin-like phosphoesterase LJF99_16475 PF05433 Glycine zipper 2TM domain LJF99_16480 PF00583 Acetyltransferase (GNAT) family LJF99_16485 PF11756 Nitrous oxide-stimulated promoter LJF99_16490 PF01321 Creatinase/Prolidase N-terminal domain LJF99_16490 PF00557 Metallopeptidase family M24 LJF99_16495 PF00392 Bacterial regulatory proteins, gntR family LJF99_16500 PF01293 Phosphoenolpyruvate carboxykinase LJF99_16505 PF01430 Hsp33 protein LJF99_16510 PF01479 S4 domain LJF99_16515 PF11356 Type II secretion system protein C LJF99_16520 PF00263 Bacterial type II and III secretion system protein LJF99_16520 PF03958 Bacterial type II/III secretion system short domain LJF99_16525 PF00437 Type II/IV secretion system protein LJF99_16530 PF00482 Type II secretion system (T2SS), protein F LJF99_16535 PF07963 Prokaryotic N-terminal methylation motif LJF99_16535 PF08334 Type II secretion system (T2SS), protein G LJF99_16540 PF12019 Type II transport protein GspH LJF99_16540 PF07963 Prokaryotic N-terminal methylation motif LJF99_16545 PF07963 Prokaryotic N-terminal methylation motif LJF99_16545 PF02501 Type II secretion system (T2SS), protein I LJF99_16550 PF07963 Prokaryotic N-terminal methylation motif LJF99_16550 PF11612 Type II secretion system (T2SS), protein J LJF99_16555 PF03934 Type II secretion system (T2SS), protein K LJF99_16560 PF05134 Type II secretion system (T2SS), protein L LJF99_16560 PF12693 GspL periplasmic domain LJF99_16565 PF04612 Type II secretion system (T2SS), protein M LJF99_16570 PF01203 Type II secretion system (T2SS), protein N LJF99_16575 PF00196 Bacterial regulatory proteins, luxR family LJF99_16580 PF01479 S4 domain LJF99_16580 PF00579 tRNA synthetases class I (W and Y) LJF99_16585 PF13419 Haloacid dehalogenase-like hydrolase LJF99_16590 PF00293 NUDIX domain LJF99_16595 PF00459 Inositol monophosphatase family LJF99_16600 PF03222 Tryptophan/tyrosine permease family LJF99_16605 PF01588 Putative tRNA binding domain LJF99_16610 PF02311 AraC-like ligand binding domain LJF99_16610 PF12833 Helix-turn-helix domain LJF99_16615 PF01340 Met Apo-repressor, MetJ LJF99_16620 PF01053 Cys/Met metabolism PLP-dependent enzyme LJF99_16625 PF00696 Amino acid kinase family LJF99_16625 PF00742 Homoserine dehydrogenase LJF99_16625 PF03447 Homoserine dehydrogenase, NAD binding domain LJF99_16640 PF04172 LrgB-like family LJF99_16645 PF03788 LrgA family LJF99_16660 PF00155 Aminotransferase class I and II LJF99_16660 PF00392 Bacterial regulatory proteins, gntR family LJF99_16680 PF04073 Aminoacyl-tRNA editing domain LJF99_16685 PF02464 Competence-damaged protein LJF99_16690 PF00154 recA bacterial DNA recombination protein LJF99_16695 PF02631 RecX family LJF99_16700 PF02272 DHHA1 domain LJF99_16700 PF01411 tRNA synthetases class II (A) LJF99_16700 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LJF99_16705 PF13840 ACT domain LJF99_16705 PF00696 Amino acid kinase family LJF99_16705 PF01842 ACT domain LJF99_16710 PF02599 Global regulator protein family LJF99_16735 PF00768 D-alanyl-D-alanine carboxypeptidase LJF99_16740 PF09335 SNARE associated Golgi protein LJF99_16745 PF00571 CBS domain LJF99_16745 PF03471 Transporter associated domain LJF99_16745 PF01595 Cyclin M transmembrane N-terminal domain LJF99_16750 PF08264 Anticodon-binding domain of tRNA LJF99_16750 PF00133 tRNA synthetases class I (I, L, M and V) LJF99_16750 PF10458 Valyl tRNA synthetase tRNA binding arm LJF99_16755 PF04364 DNA polymerase III chi subunit, HolC LJF99_16760 PF02789 Cytosol aminopeptidase family, N-terminal domain LJF99_16760 PF00883 Cytosol aminopeptidase family, catalytic domain LJF99_16765 PF03739 Lipopolysaccharide export system permease LptF/LptG LJF99_16770 PF03739 Lipopolysaccharide export system permease LptF/LptG LJF99_16990 PF06892 Phage regulatory protein CII (CP76) LJF99_17000 PF01381 Helix-turn-helix LJF99_17000 PF00717 Peptidase S24-like LJF99_17005 PF02899 Phage integrase, N-terminal SAM-like domain LJF99_17005 PF00589 Phage integrase family LJF99_17010 PF13356 Arm DNA-binding domain LJF99_17010 PF00589 Phage integrase family LJF99_17015 PF13358 DDE superfamily endonuclease LJF99_17015 PF13592 Winged helix-turn helix LJF99_17020 PF00293 NUDIX domain LJF99_17025 PF06853 Protein of unknown function (DUF1249) LJF99_17030 PF00149 Calcineurin-like phosphoesterase LJF99_17035 PF05728 Uncharacterised protein family (UPF0227) LJF99_17040 PF00293 NUDIX domain LJF99_17050 PF00204 DNA gyrase B LJF99_17050 PF00986 DNA gyrase B subunit, carboxyl terminus LJF99_17050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_17050 PF01751 Toprim domain LJF99_17055 PF03989 DNA gyrase C-terminal domain, beta-propeller LJF99_17055 PF00521 DNA gyrase/topoisomerase IV, subunit A LJF99_17090 PF00226 DnaJ domain LJF99_17090 PF01556 DnaJ C terminal domain LJF99_17090 PF00684 DnaJ central domain LJF99_17095 PF07681 DoxX LJF99_17100 PF00085 Thioredoxin LJF99_17120 PF01553 Acyltransferase LJF99_17125 PF04012 PspA/IM30 family LJF99_17140 PF01541 GIY-YIG catalytic domain LJF99_17150 PF00892 EamA-like transporter family LJF99_17155 PF03167 Uracil DNA glycosylase superfamily LJF99_17165 PF03466 LysR substrate binding domain LJF99_17165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17170 PF00950 ABC 3 transport family LJF99_17175 PF00005 ABC transporter LJF99_17180 PF01297 Zinc-uptake complex component A periplasmic LJF99_17200 PF01551 Peptidase family M23 LJF99_17200 PF08525 Opacity-associated protein A N-terminal motif LJF99_17200 PF01476 LysM domain LJF99_17205 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_17210 PF04222 Protein of unknown function (DUF416) LJF99_17225 PF02028 BCCT, betaine/carnitine/choline family transporter LJF99_17230 PF01624 MutS domain I LJF99_17230 PF05192 MutS domain III LJF99_17230 PF05190 MutS family domain IV LJF99_17230 PF00488 MutS domain V LJF99_17230 PF05188 MutS domain II LJF99_17240 PF06953 Arsenical resistance operon trans-acting repressor ArsD LJF99_17250 PF01758 Sodium Bile acid symporter family LJF99_17255 PF03960 ArsC family LJF99_17270 PF00311 Phosphoenolpyruvate carboxylase LJF99_17275 PF01546 Peptidase family M20/M25/M40 LJF99_17275 PF07687 Peptidase dimerisation domain LJF99_17280 PF02774 Semialdehyde dehydrogenase, dimerisation domain LJF99_17280 PF01118 Semialdehyde dehydrogenase, NAD binding domain LJF99_17285 PF00696 Amino acid kinase family LJF99_17290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LJF99_17290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LJF99_17295 PF00764 Arginosuccinate synthase LJF99_17300 PF00206 Lyase LJF99_17300 PF14698 Argininosuccinate lyase C-terminal LJF99_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17305 PF03466 LysR substrate binding domain LJF99_17315 PF14552 Tautomerase enzyme LJF99_17345 PF14602 Hexapeptide repeat of succinyl-transferase LJF99_17345 PF12464 Maltose acetyltransferase LJF99_17350 PF13194 Domain of unknown function (DUF4010) LJF99_17365 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17370 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17375 PF00005 ABC transporter LJF99_17375 PF12857 TOBE-like domain LJF99_17380 PF03466 LysR substrate binding domain LJF99_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17385 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_17390 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17395 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17400 PF00005 ABC transporter LJF99_17405 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_17410 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LJF99_17410 PF18416 N-acetylglucosamine binding protein domain 2 LJF99_17415 PF00672 HAMP domain LJF99_17415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_17415 PF17200 Single Cache domain 2 LJF99_17460 PF00535 Glycosyl transferase family 2 LJF99_17495 PF11230 Protein of unknown function (DUF3029) LJF99_17510 PF03466 LysR substrate binding domain LJF99_17510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17515 PF00155 Aminotransferase class I and II LJF99_17520 PF02583 Metal-sensitive transcriptional repressor LJF99_17535 PF03714 Bacterial pullanase-associated domain LJF99_17535 PF17967 Pullulanase N2 domain LJF99_17535 PF18494 Pullulanase Ins domain LJF99_17535 PF11852 Domain of unknown function (DUF3372) LJF99_17535 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJF99_17540 PF00403 Heavy-metal-associated domain LJF99_17545 PF08534 Redoxin LJF99_17555 PF00271 Helicase conserved C-terminal domain LJF99_17555 PF00270 DEAD/DEAH box helicase LJF99_17570 PF03372 Endonuclease/Exonuclease/phosphatase family LJF99_17575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_17575 PF08447 PAS fold LJF99_17590 PF06062 Uncharacterised protein family (UPF0231) LJF99_17595 PF13556 PucR C-terminal helix-turn-helix domain LJF99_17595 PF17853 GGDEF-like domain LJF99_17595 PF05651 Putative sugar diacid recognition LJF99_17600 PF02447 GntP family permease LJF99_17600 PF02447 GntP family permease LJF99_17605 PF02595 Glycerate kinase family LJF99_17615 PF00255 Glutathione peroxidase LJF99_17620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17620 PF03466 LysR substrate binding domain LJF99_17625 PF07662 Na+ dependent nucleoside transporter C-terminus LJF99_17625 PF07670 Nucleoside recognition LJF99_17625 PF01773 Na+ dependent nucleoside transporter N-terminus LJF99_17630 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LJF99_17630 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LJF99_17635 PF00472 RF-1 domain LJF99_17640 PF00543 Nitrogen regulatory protein P-II LJF99_17645 PF13416 Bacterial extracellular solute-binding protein LJF99_17655 PF00005 ABC transporter LJF99_17655 PF08402 TOBE domain LJF99_17660 PF04261 Dyp-type peroxidase family LJF99_17665 PF01316 Arginine repressor, DNA binding domain LJF99_17665 PF02863 Arginine repressor, C-terminal domain LJF99_17670 PF00005 ABC transporter LJF99_17675 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_17680 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17685 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_17690 PF00056 lactate/malate dehydrogenase, NAD binding domain LJF99_17690 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LJF99_17695 PF08238 Sel1 repeat LJF99_17700 PF00175 Oxidoreductase NAD-binding domain LJF99_17700 PF00042 Globin LJF99_17700 PF00970 Oxidoreductase FAD-binding domain LJF99_17705 PF02082 Transcriptional regulator LJF99_17710 PF01595 Cyclin M transmembrane N-terminal domain LJF99_17710 PF00571 CBS domain LJF99_17710 PF03471 Transporter associated domain LJF99_17715 PF01578 Cytochrome C assembly protein LJF99_17720 PF02978 Signal peptide binding domain LJF99_17720 PF02881 SRP54-type protein, helical bundle domain LJF99_17720 PF00448 SRP54-type protein, GTPase domain LJF99_17725 PF00886 Ribosomal protein S16 LJF99_17730 PF01782 RimM N-terminal domain LJF99_17730 PF05239 PRC-barrel domain LJF99_17735 PF01746 tRNA (Guanine-1)-methyltransferase LJF99_17740 PF01245 Ribosomal protein L19 LJF99_17750 PF02976 DNA mismatch repair enzyme MutH LJF99_17755 PF00293 NUDIX domain LJF99_17760 PF00391 PEP-utilising enzyme, mobile domain LJF99_17760 PF01590 GAF domain LJF99_17760 PF05524 PEP-utilising enzyme, N-terminal LJF99_17760 PF02896 PEP-utilising enzyme, TIM barrel domain LJF99_17765 PF01790 Prolipoprotein diacylglyceryl transferase LJF99_17770 PF00303 Thymidylate synthase LJF99_17775 PF06965 Na+/H+ antiporter 1 LJF99_17785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_17785 PF03466 LysR substrate binding domain LJF99_17790 PF01022 Bacterial regulatory protein, arsR family LJF99_17795 PF01649 Ribosomal protein S20 LJF99_17800 PF03023 Lipid II flippase MurJ LJF99_17805 PF01687 Riboflavin kinase LJF99_17805 PF06574 FAD synthetase LJF99_17810 PF08264 Anticodon-binding domain of tRNA LJF99_17810 PF06827 Zinc finger found in FPG and IleRS LJF99_17810 PF00133 tRNA synthetases class I (I, L, M and V) LJF99_17815 PF01252 Signal peptidase (SPase) II LJF99_17820 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_17825 PF02401 LytB protein LJF99_17830 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LJF99_17830 PF07963 Prokaryotic N-terminal methylation motif LJF99_17850 PF05567 Neisseria PilC beta-propeller domain LJF99_17865 PF02540 NAD synthase LJF99_17865 PF00795 Carbon-nitrogen hydrolase LJF99_17870 PF00543 Nitrogen regulatory protein P-II LJF99_17880 PF02664 S-Ribosylhomocysteinase (LuxS) LJF99_17885 PF00990 Diguanylate cyclase, GGDEF domain LJF99_17890 PF00575 S1 RNA binding domain LJF99_17890 PF00773 RNB domain LJF99_17890 PF08206 Ribonuclease B OB domain LJF99_17890 PF17876 Cold shock domain LJF99_17890 PF08461 Ribonuclease R winged-helix domain LJF99_17895 PF08032 RNA 2'-O ribose methyltransferase substrate binding LJF99_17895 PF00588 SpoU rRNA Methylase family LJF99_17905 PF13673 Acetyltransferase (GNAT) domain LJF99_17925 PF01566 Natural resistance-associated macrophage protein LJF99_17930 PF01250 Ribosomal protein S6 LJF99_17935 PF01084 Ribosomal protein S18 LJF99_17940 PF03948 Ribosomal protein L9, C-terminal domain LJF99_17940 PF01281 Ribosomal protein L9, N-terminal domain LJF99_17945 PF00970 Oxidoreductase FAD-binding domain LJF99_17945 PF00175 Oxidoreductase NAD-binding domain LJF99_17970 PF08240 Alcohol dehydrogenase GroES-like domain LJF99_17970 PF00107 Zinc-binding dehydrogenase LJF99_17975 PF09335 SNARE associated Golgi protein LJF99_17980 PF00675 Insulinase (Peptidase family M16) LJF99_17980 PF05193 Peptidase M16 inactive domain LJF99_17985 PF04262 Glutamate-cysteine ligase LJF99_17995 PF00501 AMP-binding enzyme LJF99_18005 PF00583 Acetyltransferase (GNAT) family LJF99_18005 PF13673 Acetyltransferase (GNAT) domain LJF99_18015 PF12592 Protein of unknown function (DUF3763) LJF99_18015 PF17868 AAA lid domain LJF99_18015 PF07728 AAA domain (dynein-related subfamily) LJF99_18020 PF05762 VWA domain containing CoxE-like protein LJF99_18030 PF01037 Lrp/AsnC ligand binding domain LJF99_18040 PF00990 Diguanylate cyclase, GGDEF domain LJF99_18040 PF00072 Response regulator receiver domain LJF99_18045 PF00009 Elongation factor Tu GTP binding domain LJF99_18045 PF03144 Elongation factor Tu domain 2 LJF99_18045 PF16658 Class II release factor RF3, C-terminal domain LJF99_18055 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJF99_18065 PF03129 Anticodon binding domain LJF99_18065 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LJF99_18065 PF04073 Aminoacyl-tRNA editing domain LJF99_18070 PF00672 HAMP domain LJF99_18070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_18075 PF01330 RuvA N terminal domain LJF99_18075 PF07499 RuvA, C-terminal domain LJF99_18080 PF17864 RuvB AAA lid domain LJF99_18080 PF05491 RuvB C-terminal winged helix domain LJF99_18080 PF05496 Holliday junction DNA helicase RuvB P-loop domain LJF99_18085 PF01654 Cytochrome bd terminal oxidase subunit I LJF99_18090 PF02322 Cytochrome bd terminal oxidase subunit II LJF99_18095 PF08173 Membrane bound YbgT-like protein LJF99_18100 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LJF99_18105 PF03061 Thioesterase superfamily LJF99_18110 PF01618 MotA/TolQ/ExbB proton channel family LJF99_18115 PF02472 Biopolymer transport protein ExbD/TolR LJF99_18125 PF04052 TolB amino-terminal domain LJF99_18125 PF07676 WD40-like Beta Propeller Repeat LJF99_18130 PF00691 OmpA family LJF99_18135 PF13174 Tetratricopeptide repeat LJF99_18135 PF16331 TolA binding protein trimerisation LJF99_18215 PF02445 Quinolinate synthetase A protein LJF99_18220 PF01263 Aldose 1-epimerase LJF99_18225 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJF99_18225 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJF99_18230 PF02446 4-alpha-glucanotransferase LJF99_18235 PF02806 Alpha amylase, C-terminal all-beta domain LJF99_18235 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJF99_18235 PF00128 Alpha amylase, catalytic domain LJF99_18240 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LJF99_18240 PF00128 Alpha amylase, catalytic domain LJF99_18245 PF01641 SelR domain LJF99_18255 PF00027 Cyclic nucleotide-binding domain LJF99_18255 PF07885 Ion channel LJF99_18260 PF08239 Bacterial SH3 domain LJF99_18265 PF01619 Proline dehydrogenase LJF99_18265 PF00171 Aldehyde dehydrogenase family LJF99_18265 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LJF99_18265 PF14850 DNA-binding domain of Proline dehydrogenase LJF99_18270 PF00293 NUDIX domain LJF99_18270 PF09297 NADH pyrophosphatase zinc ribbon domain LJF99_18275 PF01208 Uroporphyrinogen decarboxylase (URO-D) LJF99_18280 PF00719 Inorganic pyrophosphatase LJF99_18285 PF01225 Mur ligase family, catalytic domain LJF99_18285 PF02875 Mur ligase family, glutamate ligase domain LJF99_18285 PF08245 Mur ligase middle domain LJF99_18290 PF02441 Flavoprotein LJF99_18295 PF00440 Bacterial regulatory proteins, tetR family LJF99_18300 PF00156 Phosphoribosyl transferase domain LJF99_18305 PF00005 ABC transporter LJF99_18310 PF01061 ABC-2 type transporter LJF99_18320 PF02569 Pantoate-beta-alanine ligase LJF99_18325 PF02548 Ketopantoate hydroxymethyltransferase LJF99_18330 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LJF99_18335 PF01743 Poly A polymerase head domain LJF99_18335 PF12626 Polymerase A arginine-rich C-terminus LJF99_18335 PF12627 Probable RNA and SrmB- binding site of polymerase A LJF99_18340 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJF99_18345 PF01258 Prokaryotic dksA/traR C4-type zinc finger LJF99_18350 PF03749 Sugar fermentation stimulation protein RE domain LJF99_18350 PF17746 SfsA N-terminal OB domain LJF99_18360 PF00270 DEAD/DEAH box helicase LJF99_18360 PF04408 Helicase associated domain (HA2) LJF99_18360 PF00271 Helicase conserved C-terminal domain LJF99_18360 PF08482 ATP-dependent helicase C-terminal LJF99_18365 PF14814 Bifunctional transglycosylase second domain LJF99_18365 PF00912 Transglycosylase LJF99_18365 PF00905 Penicillin binding protein transpeptidase domain LJF99_18370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_18375 PF00893 Small Multidrug Resistance protein LJF99_18380 PF00893 Small Multidrug Resistance protein LJF99_18385 PF03466 LysR substrate binding domain LJF99_18385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_18390 PF11849 Domain of unknown function (DUF3369) LJF99_18400 PF01569 PAP2 superfamily LJF99_18415 PF00202 Aminotransferase class-III LJF99_18420 PF00654 Voltage gated chloride channel LJF99_18430 PF01521 Iron-sulphur cluster biosynthesis LJF99_18460 PF01810 LysE type translocator LJF99_18465 PF02954 Bacterial regulatory protein, Fis family LJF99_18470 PF01207 Dihydrouridine synthase (Dus) LJF99_18475 PF02321 Outer membrane efflux protein LJF99_18480 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_18510 PF00072 Response regulator receiver domain LJF99_18515 PF00854 POT family LJF99_18520 PF00483 Nucleotidyl transferase LJF99_18530 PF00459 Inositol monophosphatase family LJF99_18535 PF03795 YCII-related domain LJF99_18540 PF04279 Intracellular septation protein A LJF99_18545 PF00282 Pyridoxal-dependent decarboxylase conserved domain LJF99_18550 PF03006 Haemolysin-III related LJF99_18555 PF06826 Predicted Permease Membrane Region LJF99_18555 PF02080 TrkA-C domain LJF99_18570 PF01584 CheW-like domain LJF99_18570 PF00072 Response regulator receiver domain LJF99_18575 PF13472 GDSL-like Lipase/Acylhydrolase family LJF99_18580 PF00005 ABC transporter LJF99_18590 PF08338 Domain of unknown function (DUF1731) LJF99_18590 PF01370 NAD dependent epimerase/dehydratase family LJF99_18595 PF12792 CSS motif domain associated with EAL LJF99_18595 PF00563 EAL domain LJF99_18610 PF02390 Putative methyltransferase LJF99_18615 PF04320 Protein with unknown function (DUF469) LJF99_18620 PF04960 Glutaminase LJF99_18625 PF00581 Rhodanese-like domain LJF99_18630 PF06004 Bacterial protein of unknown function (DUF903) LJF99_18635 PF00664 ABC transporter transmembrane region LJF99_18635 PF00005 ABC transporter LJF99_18640 PF00561 alpha/beta hydrolase fold LJF99_18645 PF00171 Aldehyde dehydrogenase family LJF99_18650 PF00732 GMC oxidoreductase LJF99_18650 PF05199 GMC oxidoreductase LJF99_18655 PF00732 GMC oxidoreductase LJF99_18655 PF05199 GMC oxidoreductase LJF99_18680 PF05547 Immune inhibitor A peptidase M6 LJF99_18680 PF00801 PKD domain LJF99_18685 PF06877 Regulator of ribonuclease activity B LJF99_18690 PF00990 Diguanylate cyclase, GGDEF domain LJF99_18690 PF03707 Bacterial signalling protein N terminal repeat LJF99_18690 PF00563 EAL domain LJF99_18710 PF09905 DNA-binding protein VF530 LJF99_18715 PF02666 Phosphatidylserine decarboxylase LJF99_18720 PF03193 RsgA GTPase LJF99_18725 PF00929 Exonuclease LJF99_18755 PF00313 'Cold-shock' DNA-binding domain LJF99_18765 PF00672 HAMP domain LJF99_18765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_18770 PF00749 tRNA synthetases class I (E and Q), catalytic domain LJF99_18800 PF06483 Chitinase C LJF99_18800 PF00704 Glycosyl hydrolases family 18 LJF99_18815 PF02472 Biopolymer transport protein ExbD/TolR LJF99_18820 PF01618 MotA/TolQ/ExbB proton channel family LJF99_18825 PF01618 MotA/TolQ/ExbB proton channel family LJF99_18835 PF07715 TonB-dependent Receptor Plug Domain LJF99_18835 PF00593 TonB dependent receptor LJF99_18840 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_18845 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_18850 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_18850 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_18855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_18860 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_18860 PF00005 ABC transporter LJF99_18865 PF00005 ABC transporter LJF99_18865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_18870 PF07687 Peptidase dimerisation domain LJF99_18870 PF01546 Peptidase family M20/M25/M40 LJF99_18880 PF00156 Phosphoribosyl transferase domain LJF99_18885 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LJF99_18890 PF07417 Sigma factor-binding transcriptional regulator Crl LJF99_18895 PF00696 Amino acid kinase family LJF99_18895 PF01472 PUA domain LJF99_18900 PF00171 Aldehyde dehydrogenase family LJF99_18910 PF00582 Universal stress protein family LJF99_18930 PF00294 pfkB family carbohydrate kinase LJF99_18935 PF04227 Indigoidine synthase A like protein LJF99_18940 PF00194 Eukaryotic-type carbonic anhydrase LJF99_18945 PF03150 Di-haem cytochrome c peroxidase LJF99_18945 PF00034 Cytochrome c LJF99_18980 PF00550 Phosphopantetheine attachment site LJF99_18985 PF00550 Phosphopantetheine attachment site LJF99_18995 PF00501 AMP-binding enzyme LJF99_18995 PF13193 AMP-binding enzyme C-terminal domain LJF99_19000 PF07977 FabA-like domain LJF99_19010 PF00221 Aromatic amino acid lyase LJF99_19035 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_19035 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_19050 PF00109 Beta-ketoacyl synthase, N-terminal domain LJF99_19050 PF02801 Beta-ketoacyl synthase, C-terminal domain LJF99_19060 PF00994 Probable molybdopterin binding domain LJF99_19070 PF06738 Putative threonine/serine exporter LJF99_19075 PF12821 Threonine/Serine exporter, ThrE LJF99_19080 PF00186 Dihydrofolate reductase LJF99_19085 PF00005 ABC transporter LJF99_19085 PF00571 CBS domain LJF99_19090 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_19095 PF04069 Substrate binding domain of ABC-type glycine betaine transport system LJF99_19100 PF01507 Phosphoadenosine phosphosulfate reductase family LJF99_19115 PF02567 Phenazine biosynthesis-like protein LJF99_19120 PF01336 OB-fold nucleic acid binding domain LJF99_19120 PF00152 tRNA synthetases class II (D, K and N) LJF99_19130 PF02743 Cache domain LJF99_19130 PF00672 HAMP domain LJF99_19130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_19135 PF03616 Sodium/glutamate symporter LJF99_19140 PF17763 Glutaminase/Asparaginase C-terminal domain LJF99_19140 PF00710 Asparaginase, N-terminal LJF99_19145 PF07023 Protein of unknown function (DUF1315) LJF99_19150 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LJF99_19150 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LJF99_19165 PF01343 Peptidase family S49 LJF99_19170 PF07992 Pyridine nucleotide-disulphide oxidoreductase LJF99_19170 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LJF99_19175 PF00881 Nitroreductase family LJF99_19195 PF14602 Hexapeptide repeat of succinyl-transferase LJF99_19195 PF12464 Maltose acetyltransferase LJF99_19200 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJF99_19200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_19200 PF01842 ACT domain LJF99_19205 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LJF99_19210 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LJF99_19225 PF08240 Alcohol dehydrogenase GroES-like domain LJF99_19225 PF00107 Zinc-binding dehydrogenase LJF99_19230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_19230 PF03466 LysR substrate binding domain LJF99_19235 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LJF99_19235 PF00367 phosphotransferase system, EIIB LJF99_19235 PF02378 Phosphotransferase system, EIIC LJF99_19240 PF00474 Sodium:solute symporter family LJF99_19245 PF06196 Protein of unknown function (DUF997) LJF99_19250 PF02785 Biotin carboxylase C-terminal domain LJF99_19250 PF00289 Biotin carboxylase, N-terminal domain LJF99_19250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LJF99_19255 PF00364 Biotin-requiring enzyme LJF99_19260 PF01220 Dehydroquinase class II LJF99_19265 PF00501 AMP-binding enzyme LJF99_19265 PF16177 Acetyl-coenzyme A synthetase N-terminus LJF99_19265 PF13193 AMP-binding enzyme C-terminal domain LJF99_19275 PF00990 Diguanylate cyclase, GGDEF domain LJF99_19275 PF00563 EAL domain LJF99_19275 PF03707 Bacterial signalling protein N terminal repeat LJF99_19295 PF02613 Nitrate reductase delta subunit LJF99_19310 PF00464 Serine hydroxymethyltransferase LJF99_19325 PF03477 ATP cone domain LJF99_19330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LJF99_19330 PF01872 RibD C-terminal domain LJF99_19335 PF00677 Lumazine binding domain LJF99_19340 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LJF99_19340 PF00925 GTP cyclohydrolase II LJF99_19345 PF00885 6,7-dimethyl-8-ribityllumazine synthase LJF99_19350 PF01029 NusB family LJF99_19355 PF00586 AIR synthase related protein, N-terminal domain LJF99_19355 PF02769 AIR synthase related protein, C-terminal domain LJF99_19360 PF04608 Phosphatidylglycerophosphatase A LJF99_19365 PF00005 ABC transporter LJF99_19365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LJF99_19370 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_19375 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_19380 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_19380 PF12911 N-terminal TM domain of oligopeptide transport permease C LJF99_19385 PF02780 Transketolase, C-terminal domain LJF99_19385 PF02779 Transketolase, pyrimidine binding domain LJF99_19385 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LJF99_19390 PF00348 Polyprenyl synthetase LJF99_19395 PF02609 Exonuclease VII small subunit LJF99_19400 PF01618 MotA/TolQ/ExbB proton channel family LJF99_19405 PF00691 OmpA family LJF99_19405 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJF99_19425 PF01272 Transcription elongation factor, GreA/GreB, C-term LJF99_19425 PF03449 Transcription elongation factor, N-terminal LJF99_19435 PF01985 CRS1 / YhbY (CRM) domain LJF99_19440 PF01728 FtsJ-like methyltransferase LJF99_19445 PF17862 AAA+ lid domain LJF99_19445 PF06480 FtsH Extracellular LJF99_19445 PF00004 ATPase family associated with various cellular activities (AAA) LJF99_19445 PF01434 Peptidase family M41 LJF99_19450 PF00809 Pterin binding enzyme LJF99_19455 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LJF99_19455 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LJF99_19455 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LJF99_19455 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LJF99_19460 PF00121 Triosephosphate isomerase LJF99_19465 PF03840 Preprotein translocase SecG subunit LJF99_19480 PF02576 RimP N-terminal domain LJF99_19480 PF17384 RimP C-terminal SH3 domain LJF99_19485 PF13184 NusA-like KH domain LJF99_19485 PF08529 NusA N-terminal domain LJF99_19485 PF00575 S1 RNA binding domain LJF99_19490 PF04760 Translation initiation factor IF-2, N-terminal region LJF99_19490 PF08364 Bacterial translation initiation factor IF-2 associated region LJF99_19490 PF11987 Translation-initiation factor 2 LJF99_19490 PF00009 Elongation factor Tu GTP binding domain LJF99_19495 PF02033 Ribosome-binding factor A LJF99_19500 PF09157 Pseudouridine synthase II TruB, C-terminal LJF99_19500 PF01509 TruB family pseudouridylate synthase (N terminal domain) LJF99_19500 PF16198 tRNA pseudouridylate synthase B C-terminal domain LJF99_19505 PF00312 Ribosomal protein S15 LJF99_19510 PF03725 3' exoribonuclease family, domain 2 LJF99_19510 PF00575 S1 RNA binding domain LJF99_19510 PF01138 3' exoribonuclease family, domain 1 LJF99_19510 PF00013 KH domain LJF99_19510 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LJF99_19520 PF00990 Diguanylate cyclase, GGDEF domain LJF99_19525 PF02635 DsrE/DsrF-like family LJF99_19530 PF06476 Protein of unknown function (DUF1090) LJF99_19540 PF03575 Peptidase family S51 LJF99_19555 PF13358 DDE superfamily endonuclease LJF99_19555 PF13592 Winged helix-turn helix LJF99_19565 PF02668 Taurine catabolism dioxygenase TauD, TfdA family LJF99_19570 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase LJF99_19575 PF17969 L,D-transpeptidase C-terminal domain LJF99_19575 PF03734 L,D-transpeptidase catalytic domain LJF99_19585 PF01523 Putative modulator of DNA gyrase LJF99_19590 PF01523 Putative modulator of DNA gyrase LJF99_19595 PF00258 Flavodoxin LJF99_19600 PF02899 Phage integrase, N-terminal SAM-like domain LJF99_19600 PF00589 Phage integrase family LJF99_19605 PF00990 Diguanylate cyclase, GGDEF domain LJF99_19610 PF01741 Large-conductance mechanosensitive channel, MscL LJF99_19620 PF01368 DHH family LJF99_19620 PF02272 DHHA1 domain LJF99_19620 PF17768 RecJ OB domain LJF99_19630 PF02508 Rnf-Nqr subunit, membrane protein LJF99_19635 PF06821 Serine hydrolase LJF99_19640 PF13302 Acetyltransferase (GNAT) domain LJF99_19660 PF00665 Integrase core domain LJF99_19680 PF00665 Integrase core domain LJF99_19685 PF01695 IstB-like ATP binding protein LJF99_19710 PF01734 Patatin-like phospholipase LJF99_19725 PF04055 Radical SAM superfamily LJF99_19725 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LJF99_19730 PF03099 Biotin/lipoate A/B protein ligase family LJF99_19735 PF04359 Protein of unknown function (DUF493) LJF99_19740 PF07943 Penicillin-binding protein 5, C-terminal domain LJF99_19740 PF00768 D-alanyl-D-alanine carboxypeptidase LJF99_19745 PF03330 Lytic transglycolase LJF99_19745 PF05036 Sporulation related domain LJF99_19755 PF01098 Cell cycle protein LJF99_19760 PF03717 Penicillin-binding Protein dimerisation domain LJF99_19760 PF00905 Penicillin binding protein transpeptidase domain LJF99_19765 PF02590 Predicted SPOUT methyltransferase LJF99_19775 PF01467 Cytidylyltransferase-like LJF99_19795 PF08264 Anticodon-binding domain of tRNA LJF99_19795 PF00133 tRNA synthetases class I (I, L, M and V) LJF99_19795 PF13603 Leucyl-tRNA synthetase, Domain 2 LJF99_19800 PF07295 Zinc-ribbon containing domain LJF99_19805 PF00795 Carbon-nitrogen hydrolase LJF99_19810 PF00571 CBS domain LJF99_19810 PF03471 Transporter associated domain LJF99_19815 PF02130 Uncharacterized protein family UPF0054 LJF99_19820 PF02562 PhoH-like protein LJF99_19825 PF04055 Radical SAM superfamily LJF99_19825 PF01938 TRAM domain LJF99_19825 PF00919 Uncharacterized protein family UPF0004 LJF99_19830 PF01494 FAD binding domain LJF99_19835 PF00313 'Cold-shock' DNA-binding domain LJF99_19840 PF00990 Diguanylate cyclase, GGDEF domain LJF99_19840 PF05230 MASE2 domain LJF99_19845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_19845 PF03466 LysR substrate binding domain LJF99_19855 PF13419 Haloacid dehalogenase-like hydrolase LJF99_19875 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LJF99_19875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LJF99_19885 PF01132 Elongation factor P (EF-P) OB domain LJF99_19885 PF08207 Elongation factor P (EF-P) KOW-like domain LJF99_19885 PF09285 Elongation factor P, C-terminal LJF99_19895 PF00478 IMP dehydrogenase / GMP reductase domain LJF99_19905 PF08521 Two-component sensor kinase N-terminal LJF99_19905 PF00512 His Kinase A (phospho-acceptor) domain LJF99_19905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_19910 PF00072 Response regulator receiver domain LJF99_19910 PF00486 Transcriptional regulatory protein, C terminal LJF99_19930 PF00501 AMP-binding enzyme LJF99_19945 PF06224 Winged helix DNA-binding domain LJF99_19965 PF02313 Fumarate reductase subunit D LJF99_19970 PF02300 Fumarate reductase subunit C LJF99_19975 PF13183 4Fe-4S dicluster domain LJF99_19975 PF13085 2Fe-2S iron-sulfur cluster binding domain LJF99_19980 PF02910 Fumarate reductase flavoprotein C-term LJF99_19980 PF00890 FAD binding domain LJF99_19985 PF02743 Cache domain LJF99_19985 PF00672 HAMP domain LJF99_19985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_19990 PF03009 Glycerophosphoryl diester phosphodiesterase family LJF99_19995 PF12795 Mechanosensitive ion channel porin domain LJF99_19995 PF00924 Mechanosensitive ion channel LJF99_19995 PF12794 Mechanosensitive ion channel inner membrane domain 1 LJF99_20000 PF13592 Winged helix-turn helix LJF99_20000 PF13358 DDE superfamily endonuclease LJF99_20010 PF08525 Opacity-associated protein A N-terminal motif LJF99_20010 PF01476 LysM domain LJF99_20010 PF01551 Peptidase family M23 LJF99_20025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_20025 PF03466 LysR substrate binding domain LJF99_20045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_20045 PF00672 HAMP domain LJF99_20050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_20050 PF03466 LysR substrate binding domain LJF99_20055 PF00905 Penicillin binding protein transpeptidase domain LJF99_20055 PF00912 Transglycosylase LJF99_20055 PF17092 Penicillin-binding protein OB-like domain LJF99_20060 PF11104 Type IV pilus assembly protein PilM; LJF99_20080 PF00263 Bacterial type II and III secretion system protein LJF99_20080 PF03958 Bacterial type II/III secretion system short domain LJF99_20080 PF07660 Secretin and TonB N terminus short domain LJF99_20080 PF11741 AMIN domain LJF99_20085 PF01202 Shikimate kinase LJF99_20090 PF01761 3-dehydroquinate synthase LJF99_20100 PF02086 D12 class N6 adenine-specific DNA methyltransferase LJF99_20105 PF00834 Ribulose-phosphate 3 epimerase family LJF99_20110 PF13419 Haloacid dehalogenase-like hydrolase LJF99_20115 PF00579 tRNA synthetases class I (W and Y) LJF99_20125 PF00117 Glutamine amidotransferase class-I LJF99_20130 PF00202 Aminotransferase class-III LJF99_20135 PF04958 Arginine N-succinyltransferase beta subunit LJF99_20140 PF00171 Aldehyde dehydrogenase family LJF99_20150 PF13419 Haloacid dehalogenase-like hydrolase LJF99_20155 PF07690 Major Facilitator Superfamily LJF99_20160 PF10371 Domain of unknown function LJF99_20160 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LJF99_20160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LJF99_20160 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LJF99_20160 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LJF99_20165 PF07690 Major Facilitator Superfamily LJF99_20170 PF00005 ABC transporter LJF99_20170 PF12848 ABC transporter LJF99_20180 PF00128 Alpha amylase, catalytic domain LJF99_20180 PF16657 Maltogenic Amylase, C-terminal domain LJF99_20190 PF00012 Hsp70 protein LJF99_20205 PF07859 alpha/beta hydrolase fold LJF99_20210 PF04266 ASCH domain LJF99_20220 PF01048 Phosphorylase superfamily LJF99_20225 PF04973 Nicotinamide mononucleotide transporter LJF99_20230 PF02080 TrkA-C domain LJF99_20230 PF03600 Citrate transporter LJF99_20295 PF06071 Protein of unknown function (DUF933) LJF99_20295 PF01926 50S ribosome-binding GTPase LJF99_20300 PF01195 Peptidyl-tRNA hydrolase LJF99_20305 PF00149 Calcineurin-like phosphoesterase LJF99_20305 PF02872 5'-nucleotidase, C-terminal domain LJF99_20310 PF14572 Phosphoribosyl synthetase-associated domain LJF99_20310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LJF99_20320 PF08544 GHMP kinases C terminal LJF99_20320 PF00288 GHMP kinases N terminal domain LJF99_20325 PF03550 Outer membrane lipoprotein LolB LJF99_20330 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LJF99_20330 PF01488 Shikimate / quinate 5-dehydrogenase LJF99_20330 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LJF99_20335 PF03462 PCRF domain LJF99_20335 PF00472 RF-1 domain LJF99_20340 PF13847 Methyltransferase domain LJF99_20340 PF17827 PrmC N-terminal domain LJF99_20355 PF00793 DAHP synthetase I family LJF99_20360 PF00375 Sodium:dicarboxylate symporter family LJF99_20365 PF01228 Glycine radical LJF99_20370 PF13592 Winged helix-turn helix LJF99_20370 PF13358 DDE superfamily endonuclease LJF99_20380 PF03167 Uracil DNA glycosylase superfamily LJF99_20395 PF00923 Transaldolase/Fructose-6-phosphate aldolase LJF99_20400 PF01235 Sodium:alanine symporter family LJF99_20405 PF11992 Domain of unknown function (DUF3488) LJF99_20405 PF13559 Domain of unknown function (DUF4129) LJF99_20405 PF01841 Transglutaminase-like superfamily LJF99_20415 PF17863 AAA lid domain LJF99_20415 PF07726 ATPase family associated with various cellular activities (AAA) LJF99_20420 PF00144 Beta-lactamase LJF99_20425 PF07690 Major Facilitator Superfamily LJF99_20430 PF03466 LysR substrate binding domain LJF99_20430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LJF99_20435 PF03652 Holliday junction resolvase LJF99_20440 PF02622 Uncharacterized ACR, COG1678 LJF99_20445 PF12729 Four helix bundle sensory module for signal transduction LJF99_20445 PF00672 HAMP domain LJF99_20445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_20450 PF00672 HAMP domain LJF99_20450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LJF99_20455 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LJF99_20455 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LJF99_20460 PF04452 RNA methyltransferase LJF99_20465 PF04231 Endonuclease I LJF99_20470 PF10263 SprT-like family LJF99_20470 PF17283 SprT-like zinc ribbon domain LJF99_20475 PF02772 S-adenosylmethionine synthetase, central domain LJF99_20475 PF00438 S-adenosylmethionine synthetase, N-terminal domain LJF99_20475 PF02773 S-adenosylmethionine synthetase, C-terminal domain LJF99_20480 PF02780 Transketolase, C-terminal domain LJF99_20480 PF00456 Transketolase, thiamine diphosphate binding domain LJF99_20480 PF02779 Transketolase, pyrimidine binding domain LJF99_20490 PF01042 Endoribonuclease L-PSP LJF99_20495 PF03702 Anhydro-N-acetylmuramic acid kinase LJF99_20500 PF08525 Opacity-associated protein A N-terminal motif LJF99_20500 PF01551 Peptidase family M23 LJF99_20500 PF01476 LysM domain LJF99_20505 PF00579 tRNA synthetases class I (W and Y) LJF99_20520 PF00535 Glycosyl transferase family 2 LJF99_20535 PF01471 Putative peptidoglycan binding domain LJF99_20535 PF03734 L,D-transpeptidase catalytic domain LJF99_20540 PF05951 Bacterial protein of unknown function (DUF882) LJF99_20550 PF03458 UPF0126 domain LJF99_20560 PF06470 SMC proteins Flexible Hinge Domain LJF99_20560 PF02463 RecF/RecN/SMC N terminal domain LJF99_20565 PF04354 ZipA, C-terminal FtsZ-binding domain LJF99_20570 PF03120 NAD-dependent DNA ligase OB-fold domain LJF99_20570 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LJF99_20570 PF00533 BRCA1 C Terminus (BRCT) domain LJF99_20570 PF12826 Helix-hairpin-helix motif LJF99_20570 PF01653 NAD-dependent DNA ligase adenylation domain LJF99_20580 PF03477 ATP cone domain LJF99_20580 PF13597 Anaerobic ribonucleoside-triphosphate reductase LJF99_20615 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_20615 PF00529 HlyD membrane-fusion protein of T1SS LJF99_20620 PF01047 MarR family LJF99_20635 PF03949 Malic enzyme, NAD binding domain LJF99_20635 PF00390 Malic enzyme, N-terminal domain LJF99_20640 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LJF99_20640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_20640 PF00989 PAS fold LJF99_20640 PF17203 Single cache domain 3 LJF99_20645 PF12431 Transcriptional regulator LJF99_20645 PF00072 Response regulator receiver domain LJF99_20670 PF00990 Diguanylate cyclase, GGDEF domain LJF99_20670 PF07694 5TMR of 5TMR-LYT LJF99_20675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LJF99_20680 PF00486 Transcriptional regulatory protein, C terminal LJF99_20680 PF00072 Response regulator receiver domain LJF99_20685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_20685 PF00989 PAS fold LJF99_20685 PF11808 Phosphate regulon sensor protein PhoR LJF99_20685 PF00512 His Kinase A (phospho-acceptor) domain LJF99_20690 PF12849 PBP superfamily domain LJF99_20695 PF01435 Peptidase family M48 LJF99_20705 PF00480 ROK family LJF99_20710 PF03932 CutC family LJF99_20715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LJF99_20715 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LJF99_20720 PF00005 ABC transporter LJF99_20740 PF00293 NUDIX domain LJF99_20750 PF08534 Redoxin LJF99_20750 PF00462 Glutaredoxin LJF99_20755 PF01699 Sodium/calcium exchanger protein LJF99_20760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LJF99_20760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LJF99_20765 PF01235 Sodium:alanine symporter family LJF99_20775 PF00860 Permease family LJF99_20780 PF00990 Diguanylate cyclase, GGDEF domain LJF99_20780 PF00072 Response regulator receiver domain LJF99_20785 PF10692 Protein of unknown function (DUF2498) LJF99_20790 PF01554 MatE LJF99_20795 PF12833 Helix-turn-helix domain LJF99_20800 PF00390 Malic enzyme, N-terminal domain LJF99_20800 PF03949 Malic enzyme, NAD binding domain LJF99_20805 PF01389 OmpA-like transmembrane domain LJF99_20805 PF00691 OmpA family LJF99_20810 PF01389 OmpA-like transmembrane domain LJF99_20810 PF00691 OmpA family LJF99_20815 PF01389 OmpA-like transmembrane domain LJF99_20815 PF00691 OmpA family LJF99_20830 PF00209 Sodium:neurotransmitter symporter family LJF99_20835 PF01734 Patatin-like phospholipase LJF99_20840 PF05230 MASE2 domain LJF99_20840 PF00990 Diguanylate cyclase, GGDEF domain LJF99_20845 PF13533 Biotin-lipoyl like LJF99_20850 PF00873 AcrB/AcrD/AcrF family LJF99_20860 PF04055 Radical SAM superfamily LJF99_20860 PF08497 Radical SAM N-terminal LJF99_20860 PF11842 Domain of unknown function (DUF3362) LJF99_20890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LJF99_20895 PF02075 Crossover junction endodeoxyribonuclease RuvC LJF99_20900 PF00230 Major intrinsic protein LJF99_20905 PF01464 Transglycosylase SLT domain LJF99_20905 PF10145 Phage-related minor tail protein LJF99_20905 PF01551 Peptidase family M23 LJF99_20910 PF00128 Alpha amylase, catalytic domain LJF99_20915 PF01551 Peptidase family M23 LJF99_20930 PF13396 Phospholipase_D-nuclease N-terminal LJF99_20930 PF13091 PLD-like domain LJF99_20940 PF01842 ACT domain LJF99_20940 PF00551 Formyl transferase LJF99_20945 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LJF99_20960 PF01648 4'-phosphopantetheinyl transferase superfamily LJF99_20965 PF00877 NlpC/P60 family LJF99_20970 PF05971 RNA methyltransferase LJF99_20975 PF01575 MaoC like domain LJF99_20985 PF17969 L,D-transpeptidase C-terminal domain LJF99_20985 PF01476 LysM domain LJF99_20985 PF03734 L,D-transpeptidase catalytic domain LJF99_21005 PF13358 DDE superfamily endonuclease LJF99_21005 PF13592 Winged helix-turn helix LJF99_21020 PF00665 Integrase core domain LJF99_21025 PF01695 IstB-like ATP binding protein LJF99_21035 PF03527 RHS protein LJF99_21035 PF05593 RHS Repeat LJF99_21075 PF00440 Bacterial regulatory proteins, tetR family LJF99_21080 PF09317 Domain of unknown function (DUF1974) LJF99_21080 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LJF99_21080 PF02770 Acyl-CoA dehydrogenase, middle domain LJF99_21080 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LJF99_21085 PF00873 AcrB/AcrD/AcrF family LJF99_21095 PF00224 Pyruvate kinase, barrel domain LJF99_21095 PF02887 Pyruvate kinase, alpha/beta domain LJF99_21100 PF01418 Helix-turn-helix domain, rpiR family LJF99_21100 PF01380 SIS domain LJF99_21105 PF02685 Glucokinase LJF99_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_21115 PF00072 Response regulator receiver domain LJF99_21115 PF00486 Transcriptional regulatory protein, C terminal LJF99_21125 PF04055 Radical SAM superfamily LJF99_21125 PF18693 TRAM domain LJF99_21125 PF00919 Uncharacterized protein family UPF0004 LJF99_21130 PF00072 Response regulator receiver domain LJF99_21145 PF02001 Protein of unknown function DUF134 LJF99_21160 PF07969 Amidohydrolase family LJF99_21170 PF02049 Flagellar hook-basal body complex protein FliE LJF99_21175 PF08345 Flagellar M-ring protein C-terminal LJF99_21175 PF01514 Secretory protein of YscJ/FliF family LJF99_21180 PF14841 FliG middle domain LJF99_21180 PF14842 FliG N-terminal domain LJF99_21180 PF01706 FliG C-terminal domain LJF99_21190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_21190 PF18269 T3SS EscN ATPase C-terminal domain LJF99_21210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJF99_21210 PF02154 Flagellar motor switch protein FliM LJF99_21215 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJF99_21220 PF04347 Flagellar biosynthesis protein, FliO LJF99_21225 PF00813 FliP family LJF99_21230 PF01313 Bacterial export proteins, family 3 LJF99_21235 PF01311 Bacterial export proteins, family 1 LJF99_21240 PF01312 FlhB HrpN YscU SpaS Family LJF99_21245 PF00771 FHIPEP family LJF99_21250 PF00448 SRP54-type protein, GTPase domain LJF99_21255 PF10609 NUBPL iron-transfer P-loop NTPase LJF99_21260 PF04542 Sigma-70 region 2 LJF99_21260 PF04545 Sigma-70, region 4 LJF99_21260 PF04539 Sigma-70 region 3 LJF99_21265 PF00072 Response regulator receiver domain LJF99_21270 PF04344 Chemotaxis phosphatase, CheZ LJF99_21275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_21275 PF01627 Hpt domain LJF99_21275 PF01584 CheW-like domain LJF99_21275 PF02895 Signal transducing histidine kinase, homodimeric domain LJF99_21275 PF00072 Response regulator receiver domain LJF99_21280 PF01339 CheB methylesterase LJF99_21280 PF00072 Response regulator receiver domain LJF99_21285 PF01618 MotA/TolQ/ExbB proton channel family LJF99_21290 PF13677 Membrane MotB of proton-channel complex MotA/MotB LJF99_21290 PF00691 OmpA family LJF99_21295 PF13614 AAA domain LJF99_21305 PF01584 CheW-like domain LJF99_21320 PF00005 ABC transporter LJF99_21325 PF03379 CcmB protein LJF99_21330 PF01578 Cytochrome C assembly protein LJF99_21335 PF04995 Heme exporter protein D (CcmD) LJF99_21340 PF03100 CcmE LJF99_21345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LJF99_21345 PF01578 Cytochrome C assembly protein LJF99_21350 PF08534 Redoxin LJF99_21355 PF03918 Cytochrome C biogenesis protein LJF99_21365 PF04333 MlaA lipoprotein LJF99_21370 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LJF99_21370 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LJF99_21375 PF00462 Glutaredoxin LJF99_21380 PF01189 16S rRNA methyltransferase RsmB/F LJF99_21380 PF01029 NusB family LJF99_21395 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LJF99_21395 PF01243 Pyridoxamine 5'-phosphate oxidase LJF99_21415 PF13508 Acetyltransferase (GNAT) domain LJF99_21425 PF13592 Winged helix-turn helix LJF99_21425 PF13358 DDE superfamily endonuclease LJF99_21435 PF08007 Cupin superfamily protein LJF99_21440 PF08328 Adenylosuccinate lyase C-terminal LJF99_21440 PF00206 Lyase LJF99_21445 PF04356 Protein of unknown function (DUF489) LJF99_21455 PF00293 NUDIX domain LJF99_21460 PF00849 RNA pseudouridylate synthase LJF99_21470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJF99_21475 PF07690 Major Facilitator Superfamily LJF99_21480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LJF99_21480 PF02378 Phosphotransferase system, EIIC LJF99_21480 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LJF99_21500 PF13592 Winged helix-turn helix LJF99_21500 PF13358 DDE superfamily endonuclease LJF99_21510 PF00290 Tryptophan synthase alpha chain LJF99_21515 PF00291 Pyridoxal-phosphate dependent enzyme LJF99_21520 PF00218 Indole-3-glycerol phosphate synthase LJF99_21520 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LJF99_21525 PF02885 Glycosyl transferase family, helical bundle domain LJF99_21525 PF00591 Glycosyl transferase family, a/b domain LJF99_21530 PF00591 Glycosyl transferase family, a/b domain LJF99_21530 PF00117 Glutamine amidotransferase class-I LJF99_21530 PF02885 Glycosyl transferase family, helical bundle domain LJF99_21535 PF04715 Anthranilate synthase component I, N terminal region LJF99_21535 PF00425 chorismate binding enzyme LJF99_21540 PF02811 PHP domain LJF99_21545 PF01300 Telomere recombination LJF99_21550 PF02616 Segregation and condensation protein ScpA LJF99_21555 PF04079 Segregation and condensation complex subunit ScpB LJF99_21560 PF00849 RNA pseudouridylate synthase LJF99_21560 PF01479 S4 domain LJF99_21585 PF08361 MAATS-type transcriptional repressor, C-terminal region LJF99_21585 PF00440 Bacterial regulatory proteins, tetR family LJF99_21590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LJF99_21590 PF00529 HlyD membrane-fusion protein of T1SS LJF99_21595 PF00873 AcrB/AcrD/AcrF family LJF99_21600 PF02321 Outer membrane efflux protein LJF99_21605 PF13592 Winged helix-turn helix LJF99_21605 PF13358 DDE superfamily endonuclease LJF99_21610 PF16363 GDP-mannose 4,6 dehydratase LJF99_21615 PF04321 RmlD substrate binding domain LJF99_21620 PF00483 Nucleotidyl transferase LJF99_21625 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LJF99_21635 PF00437 Type II/IV secretion system protein LJF99_21635 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LJF99_21640 PF00482 Type II secretion system (T2SS), protein F LJF99_21645 PF07963 Prokaryotic N-terminal methylation motif LJF99_21645 PF08334 Type II secretion system (T2SS), protein G LJF99_21685 PF00263 Bacterial type II and III secretion system protein LJF99_21685 PF03958 Bacterial type II/III secretion system short domain LJF99_21695 PF00005 ABC transporter LJF99_21710 PF02350 UDP-N-acetylglucosamine 2-epimerase LJF99_21730 PF02080 TrkA-C domain LJF99_21730 PF03600 Citrate transporter LJF99_21735 PF03600 Citrate transporter LJF99_21735 PF02080 TrkA-C domain LJF99_21750 PF01370 NAD dependent epimerase/dehydratase family LJF99_21755 PF00953 Glycosyl transferase family 4 LJF99_21760 PF02719 Polysaccharide biosynthesis protein LJF99_21775 PF00535 Glycosyl transferase family 2 LJF99_21790 PF00534 Glycosyl transferases group 1 LJF99_21790 PF13439 Glycosyltransferase Family 4 LJF99_21805 PF02397 Bacterial sugar transferase LJF99_21815 PF04337 Protein of unknown function, DUF480 LJF99_21820 PF00271 Helicase conserved C-terminal domain LJF99_21820 PF00176 SNF2 family N-terminal domain LJF99_21820 PF04434 SWIM zinc finger LJF99_21830 PF00665 Integrase core domain LJF99_21835 PF01695 IstB-like ATP binding protein LJF99_21850 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LJF99_21855 PF00676 Dehydrogenase E1 component LJF99_21860 PF02779 Transketolase, pyrimidine binding domain LJF99_21860 PF02780 Transketolase, C-terminal domain LJF99_21865 PF13358 DDE superfamily endonuclease LJF99_21865 PF13592 Winged helix-turn helix LJF99_21870 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LJF99_21870 PF00364 Biotin-requiring enzyme LJF99_21870 PF02817 e3 binding domain LJF99_21875 PF00313 'Cold-shock' DNA-binding domain LJF99_21915 PF11871 Domain of unknown function (DUF3391) LJF99_21915 PF01966 HD domain LJF99_21920 PF00849 RNA pseudouridylate synthase LJF99_21920 PF01479 S4 domain LJF99_21930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LJF99_21935 PF12850 Calcineurin-like phosphoesterase superfamily domain LJF99_21955 PF01584 CheW-like domain LJF99_21955 PF00072 Response regulator receiver domain LJF99_21960 PF03705 CheR methyltransferase, all-alpha domain LJF99_21960 PF01739 CheR methyltransferase, SAM binding domain LJF99_21965 PF00460 Flagella basal body rod protein LJF99_21970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_21970 PF00460 Flagella basal body rod protein LJF99_21980 PF07559 Flagellar basal body protein FlaE LJF99_21980 PF00460 Flagella basal body rod protein LJF99_21980 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_21985 PF00460 Flagella basal body rod protein LJF99_21985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_21990 PF00460 Flagella basal body rod protein LJF99_21990 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LJF99_21995 PF02107 Flagellar L-ring protein LJF99_22000 PF02119 Flagellar P-ring protein LJF99_22005 PF10135 Rod binding protein LJF99_22005 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LJF99_22020 PF03448 MgtE intracellular N domain LJF99_22020 PF01769 Divalent cation transporter LJF99_22020 PF00571 CBS domain LJF99_22025 PF02541 Ppx/GppA phosphatase family LJF99_22030 PF02503 Polyphosphate kinase middle domain LJF99_22030 PF13090 Polyphosphate kinase C-terminal domain 2 LJF99_22030 PF17941 Polyphosphate kinase C-terminal domain 1 LJF99_22030 PF13089 Polyphosphate kinase N-terminal domain LJF99_22050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_22050 PF13188 PAS domain LJF99_22050 PF00512 His Kinase A (phospho-acceptor) domain LJF99_22055 PF00158 Sigma-54 interaction domain LJF99_22055 PF00072 Response regulator receiver domain LJF99_22055 PF02954 Bacterial regulatory protein, Fis family LJF99_22060 PF01784 NIF3 (NGG1p interacting factor 3) LJF99_22065 PF00551 Formyl transferase LJF99_22070 PF02769 AIR synthase related protein, C-terminal domain LJF99_22070 PF00586 AIR synthase related protein, N-terminal domain LJF99_22085 PF00308 Bacterial dnaA protein LJF99_22090 PF00463 Isocitrate lyase family LJF99_22095 PF01274 Malate synthase LJF99_22105 PF14437 MafB19-like deaminase LJF99_22110 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_22115 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_22120 PF00005 ABC transporter LJF99_22125 PF01895 PhoU domain LJF99_22130 PF00571 CBS domain LJF99_22130 PF03471 Transporter associated domain LJF99_22130 PF01595 Cyclin M transmembrane N-terminal domain LJF99_22145 PF13520 Amino acid permease LJF99_22150 PF04116 Fatty acid hydroxylase superfamily LJF99_22155 PF00005 ABC transporter LJF99_22160 PF00528 Binding-protein-dependent transport system inner membrane component LJF99_22165 PF00497 Bacterial extracellular solute-binding proteins, family 3 LJF99_22170 PF08448 PAS fold LJF99_22170 PF00990 Diguanylate cyclase, GGDEF domain LJF99_22175 PF07690 Major Facilitator Superfamily LJF99_22180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LJF99_22180 PF07730 Histidine kinase LJF99_22180 PF05231 MASE1 LJF99_22185 PF00196 Bacterial regulatory proteins, luxR family LJF99_22185 PF00072 Response regulator receiver domain LJF99_22190 PF14760 Rnk N-terminus LJF99_22190 PF01272 Transcription elongation factor, GreA/GreB, C-term LJF99_22205 PF00245 Alkaline phosphatase LJF99_22210 PF00245 Alkaline phosphatase LJF99_22215 PF01926 50S ribosome-binding GTPase LJF99_22220 PF00850 Histone deacetylase domain LJF99_22230 PF13307 Helicase C-terminal domain LJF99_22230 PF06733 DEAD_2 LJF99_22235 PF13609 Gram-negative porin LJF99_22245 PF00155 Aminotransferase class I and II LJF99_22250 PF05872 Bacterial protein of unknown function (DUF853) LJF99_22265 PF00753 Metallo-beta-lactamase superfamily LJF99_22265 PF03772 Competence protein LJF99_22270 PF00005 ABC transporter LJF99_22270 PF00664 ABC transporter transmembrane region LJF99_22275 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LJF99_22280 PF03966 Trm112p-like protein LJF99_22285 PF02348 Cytidylyltransferase LJF99_22290 PF00196 Bacterial regulatory proteins, luxR family LJF99_22290 PF00072 Response regulator receiver domain LJF99_22295 PF02151 UvrB/uvrC motif LJF99_22295 PF01541 GIY-YIG catalytic domain LJF99_22295 PF08459 UvrC Helix-hairpin-helix N-terminal LJF99_22300 PF01066 CDP-alcohol phosphatidyltransferase LJF99_22320 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system LJF99_22465 PF00816 H-NS histone family LJF99_22490 PF00665 Integrase core domain LJF99_22495 PF01695 IstB-like ATP binding protein LJF99_22515 PF01906 Putative heavy-metal-binding LJF99_22520 PF13358 DDE superfamily endonuclease LJF99_22520 PF13592 Winged helix-turn helix LJF99_22530 PF00102 Protein-tyrosine phosphatase LJF99_22530 PF09013 YopH, N-terminal LJF99_22545 PF00872 Transposase, Mutator family LJF99_22555 PF13614 AAA domain LJF99_22565 PF00816 H-NS histone family LJF99_22595 PF13614 AAA domain LJF99_22600 PF02796 Helix-turn-helix domain of resolvase LJF99_22600 PF00239 Resolvase, N terminal domain LJF99_22610 PF08019 Phosphoethanolamine transferase EptA/EptB LJF99_22610 PF00884 Sulfatase LJF99_22615 PF08019 Phosphoethanolamine transferase EptA/EptB LJF99_22615 PF00884 Sulfatase LJF99_22635 PF01848 Hok/gef family LJF99_22640 PF01695 IstB-like ATP binding protein LJF99_22645 PF00665 Integrase core domain LJF99_22675 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LJF99_22685 PF04002 RadC-like JAB domain LJF99_22705 PF01555 DNA methylase LJF99_22715 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LJF99_22730 PF01464 Transglycosylase SLT domain LJF99_22740 PF18272 single-stranded DNA binding TraI N-terminal subdomain LJF99_22740 PF07057 DNA helicase TraI LJF99_22740 PF18340 DNA relaxase TraI 2B/2B-like domain LJF99_22740 PF08751 TrwC relaxase LJF99_22745 PF02796 Helix-turn-helix domain of resolvase LJF99_22745 PF00239 Resolvase, N terminal domain LJF99_22760 PF13700 Domain of unknown function (DUF4158) LJF99_22760 PF01526 Tn3 transposase DDE domain LJF99_22780 PF13614 AAA domain LJF99_22795 PF00589 Phage integrase family LJF99_22880 PF01548 Transposase LJF99_22880 PF02371 Transposase IS116/IS110/IS902 family LJF99_22895 PF09632 Rac1-binding domain LJF99_22895 PF00069 Protein kinase domain LJF99_22905 PF01848 Hok/gef family LJF99_22930 PF13358 DDE superfamily endonuclease LJF99_22930 PF13592 Winged helix-turn helix LJF99_22935 PF00665 Integrase core domain LJF99_22940 PF01695 IstB-like ATP binding protein LJF99_22945 PF00872 Transposase, Mutator family LJF99_22950 PF00561 alpha/beta hydrolase fold LJF99_22970 PF03496 ADP-ribosyltransferase exoenzyme LJF99_22980 PF01312 FlhB HrpN YscU SpaS Family LJF99_22985 PF01311 Bacterial export proteins, family 1 LJF99_22990 PF01313 Bacterial export proteins, family 3 LJF99_22995 PF00813 FliP family LJF99_23000 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LJF99_23015 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LJF99_23015 PF02874 ATP synthase alpha/beta family, beta-barrel domain LJF99_23015 PF18269 T3SS EscN ATPase C-terminal domain LJF99_23020 PF07201 HrpJ-like domain LJF99_23025 PF09059 TyeA LJF99_23035 PF09474 Type III secretion system YscX (type_III_YscX) LJF99_23045 PF00771 FHIPEP family LJF99_23050 PF09621 Type III secretion system regulator (LcrR) LJF99_23055 PF07216 LcrG protein LJF99_23060 PF04792 V antigen (LcrV) protein LJF99_23065 PF07720 Tetratricopeptide repeat LJF99_23070 PF04888 Secretion system effector C (SseC) like family LJF99_23075 PF05844 YopD protein LJF99_23080 PF05932 Tir chaperone protein (CesT) family LJF99_23090 PF09619 Type III secretion system lipoprotein chaperone (YscW) LJF99_23095 PF12833 Helix-turn-helix domain LJF99_23105 PF05932 Tir chaperone protein (CesT) family LJF99_23110 PF00263 Bacterial type II and III secretion system protein LJF99_23110 PF03958 Bacterial type II/III secretion system short domain LJF99_23115 PF16693 Inner membrane component of T3SS, periplasmic domain LJF99_23115 PF16697 Inner membrane component of T3SS, cytoplasmic domain LJF99_23125 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LJF99_23130 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) LJF99_23135 PF09025 YopR, type III needle-polymerisation regulator LJF99_23140 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LJF99_23145 PF01514 Secretory protein of YscJ/FliF family LJF99_23150 PF06578 YOP proteins translocation protein K (YscK) LJF99_23155 PF02108 Flagellar assembly protein FliH LJF99_23165 PF01548 Transposase LJF99_23165 PF02371 Transposase IS116/IS110/IS902 family LJF99_23185 PF00872 Transposase, Mutator family LJF99_23190 PF18272 single-stranded DNA binding TraI N-terminal subdomain LJF99_23190 PF18340 DNA relaxase TraI 2B/2B-like domain LJF99_23190 PF08751 TrwC relaxase LJF99_23190 PF07057 DNA helicase TraI LJF99_23195 PF12615 F sex factor protein N terminal LJF99_23195 PF10412 Type IV secretion-system coupling protein DNA-binding domain LJF99_23200 PF05818 Enterobacterial TraT complement resistance protein LJF99_23210 PF07916 TraG-like protein, N-terminal region LJF99_23215 PF06122 Conjugative relaxosome accessory transposon protein LJF99_23220 PF13728 F plasmid transfer operon protein LJF99_23230 PF06986 Type-1V conjugative transfer system mating pair stabilisation LJF99_23240 PF09673 Type-F conjugative transfer system pilin assembly protein LJF99_23245 PF06834 TraU protein LJF99_23250 PF12477 Sex factor F TraW protein N terminal LJF99_23260 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LJF99_23265 PF09676 Type IV conjugative transfer system lipoprotein (TraV) LJF99_23270 PF03743 Bacterial conjugation TrbI-like protein LJF99_23280 PF05309 TraE protein LJF99_23285 PF07178 TraL protein LJF99_23290 PF05513 TraA LJF99_23315 PF13614 AAA domain LJF99_23330 PF00816 H-NS histone family LJF99_23355 PF02371 Transposase IS116/IS110/IS902 family LJF99_23355 PF01548 Transposase LJF99_23375 PF07715 TonB-dependent Receptor Plug Domain LJF99_23375 PF00593 TonB dependent receptor LJF99_23390 PF00816 H-NS histone family LJF99_23430 PF13276 HTH-like domain LJF99_23430 PF00665 Integrase core domain LJF99_23430 PF13333 Integrase core domain LJF99_23435 PF13936 Helix-turn-helix domain LJF99_23435 PF00665 Integrase core domain LJF99_23445 PF10609 NUBPL iron-transfer P-loop NTPase LJF99_23450 PF02796 Helix-turn-helix domain of resolvase LJF99_23450 PF00239 Resolvase, N terminal domain LJF99_23495 PF00149 Calcineurin-like phosphoesterase LJF99_23500 PF00239 Resolvase, N terminal domain LJF99_23500 PF02796 Helix-turn-helix domain of resolvase LJF99_23525 PF01848 Hok/gef family LJF99_23540 PF04002 RadC-like JAB domain LJF99_23560 PF01555 DNA methylase LJF99_23575 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LJF99_23590 PF01464 Transglycosylase SLT domain LJF99_23595 PF05261 TraM protein, DNA-binding LJF99_23600 PF08751 TrwC relaxase LJF99_23600 PF07057 DNA helicase TraI LJF99_23600 PF18272 single-stranded DNA binding TraI N-terminal subdomain LJF99_23600 PF18340 DNA relaxase TraI 2B/2B-like domain LJF99_23605 PF12615 F sex factor protein N terminal LJF99_23605 PF10412 Type IV secretion-system coupling protein DNA-binding domain LJF99_23610 PF05818 Enterobacterial TraT complement resistance protein LJF99_23620 PF07916 TraG-like protein, N-terminal region LJF99_23625 PF06122 Conjugative relaxosome accessory transposon protein LJF99_23630 PF13728 F plasmid transfer operon protein LJF99_23640 PF13728 F plasmid transfer operon protein LJF99_23645 PF06986 Type-1V conjugative transfer system mating pair stabilisation LJF99_23650 PF09673 Type-F conjugative transfer system pilin assembly protein LJF99_23655 PF06834 TraU protein LJF99_23660 PF12477 Sex factor F TraW protein N terminal LJF99_23670 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer LJF99_23675 PF09676 Type IV conjugative transfer system lipoprotein (TraV) LJF99_23680 PF03743 Bacterial conjugation TrbI-like protein LJF99_23690 PF05309 TraE protein LJF99_23695 PF07178 TraL protein LJF99_23700 PF05513 TraA LJF99_23725 PF01381 Helix-turn-helix LJF99_23770 PF13614 AAA domain LJF99_23775 PF08535 KorB domain LJF99_23775 PF02195 ParB-like nuclease domain LJF99_23775 PF06613 KorB C-terminal beta-barrel domain LJF99_23800 PF18818 Metallopeptidase superfamily domain LJF99_23800 PF08401 Domain of unknown function (DUF1738) LJF99_23800 PF13362 Toprim domain LJF99_23810 PF13362 Toprim domain LJF99_23810 PF18818 Metallopeptidase superfamily domain LJF99_23810 PF08401 Domain of unknown function (DUF1738) LJF99_23815 PF02534 Type IV secretory system Conjugative DNA transfer LJF99_23820 PF00437 Type II/IV secretion system protein LJF99_23825 PF03743 Bacterial conjugation TrbI-like protein LJF99_23830 PF03524 Conjugal transfer protein LJF99_23835 PF04335 VirB8 protein LJF99_23845 PF04610 TrbL/VirB6 plasmid conjugal transfer protein LJF99_23860 PF03135 CagE, TrbE, VirB family, component of type IV transporter system LJF99_23880 PF01131 DNA topoisomerase LJF99_23880 PF01751 Toprim domain LJF99_23880 PF01396 Topoisomerase DNA binding C4 zinc finger LJF99_23890 PF01751 Toprim domain LJF99_23890 PF01396 Topoisomerase DNA binding C4 zinc finger LJF99_23890 PF01131 DNA topoisomerase LJF99_23920 PF02796 Helix-turn-helix domain of resolvase LJF99_23920 PF00239 Resolvase, N terminal domain LJF99_23930 PF13610 DDE domain LJF99_23945 PF00809 Pterin binding enzyme LJF99_23950 PF00893 Small Multidrug Resistance protein LJF99_23960 PF06442 R67 dihydrofolate reductase LJF99_23970 PF13610 DDE domain LJF99_23980 PF00440 Bacterial regulatory proteins, tetR family LJF99_23980 PF02909 Tetracyclin repressor-like, C-terminal domain LJF99_23985 PF07690 Major Facilitator Superfamily LJF99_23995 PF00589 Phage integrase family LJF99_24000 PF13610 DDE domain LJF99_24010 PF02796 Helix-turn-helix domain of resolvase LJF99_24010 PF00239 Resolvase, N terminal domain LJF99_24030 PF02909 Tetracyclin repressor-like, C-terminal domain LJF99_24030 PF00440 Bacterial regulatory proteins, tetR family LJF99_24035 PF07690 Major Facilitator Superfamily LJF99_24045 PF00589 Phage integrase family LJF99_24060 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LJF99_24075 PF16793 RepB DNA-primase from phage plasmid LJF99_24135 PF04221 RelB antitoxin LJF99_24140 PF05016 ParE toxin of type II toxin-antitoxin system, parDE LJF99_24150 PF04837 MbeB-like, N-term conserved region LJF99_24165 PF05713 Bacterial mobilisation protein (MobC) LJF99_24250 PF00872 Transposase, Mutator family LJF99_24255 PF03421 YopJ Serine/Threonine acetyltransferase