locus-tag	class	description
LJF99_00010	COG4695	Portal protein
LJF99_00080	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LJF99_00090	COG4974	Belongs to the 'phage' integrase family
LJF99_00120	COG2908	Hydrolyzes the pyrophosphate bond of UDP-2,3- diacylglucosamine to yield 2,3-diacylglucosamine 1-phosphate (lipid X) and UMP by catalyzing the attack of water at the alpha-P atom. Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJF99_00130	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LJF99_00190	COG2119	membrane
LJF99_00235	COG2205	protein histidine kinase activity
LJF99_00235	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_00245	COG4138	Part of the ABC transporter complex BtuCDF involved in vitamin B12 import. Responsible for energy coupling to the transport system
LJF99_00250	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJF99_00255	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LJF99_00260	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LJF99_00265	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
LJF99_00270	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LJF99_00290	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
LJF99_00295	COG0505	Belongs to the CarA family
LJF99_00300	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LJF99_00305	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LJF99_00345	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJF99_00350	COG0513	Belongs to the DEAD box helicase family
LJF99_00375	COG0789	Transcriptional regulator
LJF99_00390	COG0493	'glutamate synthase
LJF99_00395	COG0070	glutamate synthase
LJF99_00395	COG0067	glutamate synthase
LJF99_00395	COG0069	glutamate synthase activity
LJF99_00400	COG1242	4 iron, 4 sulfur cluster binding
LJF99_00485	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LJF99_00490	COG1288	antiporter activity
LJF99_00495	COG0436	Aminotransferase
LJF99_00505	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
LJF99_00510	COG2027	D-alanyl-D-alanine carboxypeptidase
LJF99_00515	COG1061	Type III restriction enzyme res subunit
LJF99_00520	COG1566	PFAM secretion protein HlyD family protein
LJF99_00530	COG1966	Carbon starvation protein
LJF99_00535	COG3279	Response regulator of the LytR AlgR family
LJF99_00540	COG3275	phosphorelay sensor kinase activity
LJF99_00550	COG1012	belongs to the aldehyde dehydrogenase family
LJF99_00550	COG1454	alcohol dehydrogenase
LJF99_00560	COG2095	MarC family integral membrane protein
LJF99_00570	COG0601	transmembrane transport
LJF99_00575	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJF99_00580	COG0444	Belongs to the ABC transporter superfamily
LJF99_00595	COG0861	Integral membrane protein TerC family
LJF99_00600	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LJF99_00610	COG1301	dicarboxylic acid transport
LJF99_00625	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LJF99_00640	COG0537	adenosine 5'-monophosphoramidase activity
LJF99_00675	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJF99_00680	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJF99_00700	COG1007	ATP synthesis coupled electron transport
LJF99_00705	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_00715	COG0713	ATP synthesis coupled electron transport
LJF99_00720	COG0839	Belongs to the complex I subunit 6 family
LJF99_00725	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_00730	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LJF99_00735	COG1034	ATP synthesis coupled electron transport
LJF99_00750	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_00750	COG0649	NAD binding
LJF99_00755	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_00760	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_00765	COG1360	Flagellar Motor Protein
LJF99_00770	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJF99_00785	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
LJF99_00800	COG4597	amino acid ABC transporter
LJF99_00805	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_00810	COG0765	amino acid transport
LJF99_00815	COG1126	abc transporter atp-binding protein
LJF99_00825	COG0724	RNA recognition motif
LJF99_00830	COG4989	oxidoreductase activity
LJF99_00855	COG3437	response regulator, receiver
LJF99_00860	COG0583	DNA-binding transcription factor activity
LJF99_00895	COG2814	Major facilitator Superfamily
LJF99_00900	COG0583	DNA-binding transcription factor activity
LJF99_00910	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LJF99_00915	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LJF99_00920	COG0539	negative regulation of cytoplasmic translation
LJF99_00925	COG0776	regulation of translation
LJF99_00935	COG2956	Modulates cellular lipopolysaccharide (LPS) levels by regulating LpxC, which is involved in lipid A biosynthesis. May act by modulating the proteolytic activity of FtsH towards LpxC. May also coordinate assembly of proteins involved in LPS synthesis at the plasma membrane
LJF99_00940	COG0284	orotidine-5'-phosphate decarboxylase activity
LJF99_00955	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
LJF99_00960	COG0602	queuosine metabolic process
LJF99_00965	COG3530	Putative quorum-sensing-regulated virulence factor
LJF99_00970	COG2096	Adenosyltransferase
LJF99_00975	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_00985	COG1757	Na H antiporter
LJF99_00990	COG1435	thymidine kinase activity
LJF99_01015	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LJF99_01020	COG1740	oxidoreductase activity, acting on hydrogen as donor, iron-sulfur protein as acceptor
LJF99_01025	COG0437	4 iron, 4 sulfur cluster binding
LJF99_01030	COG5557	Pfam Polysulphide reductase, NrfD
LJF99_01035	COG0374	Belongs to the NiFe NiFeSe hydrogenase large subunit family
LJF99_01040	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LJF99_01045	COG1773	rubredoxin
LJF99_01055	COG0601	transmembrane transport
LJF99_01060	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJF99_01075	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
LJF99_01080	COG0375	protein maturation
LJF99_01085	COG0309	Hydrogenase expression formation protein (HypE)
LJF99_01095	COG0298	carbon dioxide binding
LJF99_01100	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LJF99_01110	COG1921	L-seryl-tRNASec selenium transferase activity
LJF99_01120	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
LJF99_01130	COG3260	NADH ubiquinone oxidoreductase 20
LJF99_01135	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_01140	COG3261	NADH dehydrogenase
LJF99_01140	COG3262	NADH dehydrogenase (ubiquinone), 30 kDa subunit
LJF99_01145	COG0650	Formate hydrogenlyase subunit 4
LJF99_01150	COG0651	ATP synthesis coupled electron transport
LJF99_01155	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJF99_01160	COG3158	transport of potassium into the cell
LJF99_01180	COG1142	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJF99_01205	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LJF99_01210	COG0326	Molecular chaperone. Has ATPase activity
LJF99_01215	COG0563	adenylate kinase activity
LJF99_01220	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LJF99_01225	COG3788	relative of glutathione S-transferase, MAPEG superfamily
LJF99_01230	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJF99_01235	COG0840	transmembrane signaling receptor activity
LJF99_01250	COG3300	MHYT domain
LJF99_01250	COG5001	Diguanylate cyclase
LJF99_01255	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LJF99_01275	COG1021	2,3-dihydroxybenzoate-AMP ligase
LJF99_01280	COG3433	isochorismatase activity
LJF99_01280	COG1535	isochorismatase
LJF99_01285	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LJF99_01290	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_01300	COG0300	oxidoreductase activity
LJF99_01300	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_01300	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LJF99_01300	COG3321	synthase
LJF99_01300	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_01305	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LJF99_01310	COG2977	Belongs to the P-Pant transferase superfamily
LJF99_01315	COG1120	ATPase activity
LJF99_01320	COG4779	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJF99_01325	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJF99_01330	COG4771	TonB-dependent receptor
LJF99_01370	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LJF99_01375	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LJF99_01380	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJF99_01395	COG1570	exodeoxyribonuclease VII activity
LJF99_01400	COG3038	cytochrome b561
LJF99_01420	COG0517	IMP dehydrogenase activity
LJF99_01420	COG0516	GMP reductase activity
LJF99_01425	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LJF99_01425	COG0519	Catalyzes the synthesis of GMP from XMP
LJF99_01460	COG1025	Belongs to the peptidase M16 family
LJF99_01465	COG2062	phosphohistidine phosphatase, SixA
LJF99_01475	COG0697	spore germination
LJF99_01480	COG4166	transmembrane transport
LJF99_01485	COG0158	D-fructose-1,6-bisphosphate 1-phosphohydrolase class 1
LJF99_01490	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LJF99_01500	COG4591	ABC-type transport system involved in lipoprotein release permease component
LJF99_01505	COG1136	(ABC) transporter
LJF99_01510	COG4591	ABC-type transport system involved in lipoprotein release permease component
LJF99_01515	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
LJF99_01525	COG0544	peptidyl-prolyl cis-trans isomerase activity
LJF99_01530	COG0740	serine-type endopeptidase activity
LJF99_01535	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LJF99_01540	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LJF99_01545	COG0776	regulation of translation
LJF99_01550	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LJF99_01555	COG0488	(ABC) transporter
LJF99_01560	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LJF99_01565	COG3162	membrane
LJF99_01580	COG1250	3-hydroxyacyl-CoA dehydrogenase
LJF99_01580	COG1024	Enoyl-CoA hydratase
LJF99_01585	COG1115	amino acid carrier protein
LJF99_01590	COG0456	acetyltransferase
LJF99_01600	COG1584	GPR1 FUN34 yaaH family protein
LJF99_01630	COG1024	Enoyl-CoA hydratase
LJF99_01635	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LJF99_01640	COG1960	acyl-CoA dehydrogenase activity
LJF99_01650	COG1960	acyl-CoA dehydrogenase activity
LJF99_01655	COG1024	Enoyl-CoA hydratase
LJF99_01660	COG1024	Enoyl-CoA hydratase
LJF99_01670	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_01680	COG0730	response to heat
LJF99_01735	COG3706	GGDEF domain
LJF99_01740	COG2840	Smr protein MutS2
LJF99_01745	COG2890	protein-(glutamine-N5) methyltransferase activity
LJF99_01750	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LJF99_01760	COG0513	Belongs to the DEAD box helicase family
LJF99_01765	COG5654	RES domain protein
LJF99_01775	COG0814	amino acid
LJF99_01780	COG1609	Transcriptional regulator
LJF99_01785	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_01785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_01790	COG1105	Belongs to the carbohydrate kinase PfkB family
LJF99_01795	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJF99_01795	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJF99_01795	COG3925	protein-phosphocysteine-D-fructose-phosphotransferase system transporter activity
LJF99_01800	COG3313	Fe-S protein
LJF99_01805	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
LJF99_01810	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LJF99_01815	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LJF99_01820	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LJF99_01830	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LJF99_01855	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LJF99_01860	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LJF99_01865	COG0291	Belongs to the bacterial ribosomal protein bL35 family
LJF99_01870	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LJF99_01875	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LJF99_01880	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJF99_01880	COG0072	phenylalanine-tRNA ligase activity
LJF99_01885	COG0776	regulation of translation
LJF99_01915	COG2199	diguanylate cyclase activity
LJF99_01920	COG1609	Transcriptional regulator
LJF99_01925	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJF99_01930	COG1879	ABC-type sugar transport system periplasmic component
LJF99_01935	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJF99_01945	COG1869	D-ribose catabolic process
LJF99_01950	COG0625	glutathione transferase activity
LJF99_01965	COG0037	tRNA processing
LJF99_01970	COG0589	response to stress
LJF99_01975	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJF99_01990	COG2217	Heavy metal translocating P-type atpase
LJF99_02000	COG2010	Cytochrome c
LJF99_02015	COG3278	Belongs to the heme-copper respiratory oxidase family
LJF99_02025	COG1956	GAF domain-containing protein
LJF99_02030	COG3109	RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities
LJF99_02040	COG0308	aminopeptidase N
LJF99_02050	COG2902	Dehydrogenase
LJF99_02055	COG0167	dihydroorotate dehydrogenase activity
LJF99_02065	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LJF99_02065	COG0116	Belongs to the methyltransferase superfamily
LJF99_02075	COG0488	(ABC) transporter
LJF99_02090	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LJF99_02095	COG1067	ATP-dependent peptidase activity
LJF99_02110	COG4128	Pfam Zonular occludens toxin
LJF99_02125	COG4584	PFAM Integrase catalytic
LJF99_02130	COG1484	DNA-dependent DNA replication
LJF99_02200	COG4221	oxidoreductase activity
LJF99_02250	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LJF99_02260	COG2995	paraquat-inducible protein a
LJF99_02270	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LJF99_02270	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
LJF99_02285	COG0084	hydrolase, TatD family'
LJF99_02290	COG0470	DNA polymerase III
LJF99_02295	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LJF99_02300	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LJF99_02305	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LJF99_02310	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJF99_02315	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LJF99_02320	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_02330	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LJF99_02335	COG0416	fatty acid biosynthetic process
LJF99_02340	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LJF99_02345	COG1399	metal-binding, possibly nucleic acid-binding protein
LJF99_02355	COG0546	phosphoglycolate phosphatase activity
LJF99_02365	COG1530	ribonuclease E activity
LJF99_02370	COG0306	phosphate transporter
LJF99_02375	COG0717	Belongs to the dCTP deaminase family
LJF99_02380	COG0572	uridine kinase
LJF99_02385	COG0489	protein tyrosine kinase activity
LJF99_02390	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJF99_02390	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJF99_02395	COG0625	glutathione transferase activity
LJF99_02400	COG1254	Belongs to the acylphosphatase family
LJF99_02410	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LJF99_02425	COG0709	Synthesizes selenophosphate from selenide and ATP
LJF99_02430	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
LJF99_02435	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LJF99_02440	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LJF99_02450	COG1643	Atp-dependent helicase
LJF99_02455	COG0517	IMP dehydrogenase activity
LJF99_02455	COG0617	tRNA 3'-terminal CCA addition
LJF99_02455	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LJF99_02460	COG2197	response regulator
LJF99_02465	COG3314	Sporulation integral membrane protein YlbJ
LJF99_02470	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LJF99_02475	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LJF99_02480	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LJF99_02485	COG2832	Protein of unknown function (DUF454)
LJF99_02490	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LJF99_02510	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_02515	COG2267	carboxylic ester hydrolase activity
LJF99_02525	COG1214	PFAM Peptidase M22, glycoprotease
LJF99_02530	COG1199	ATP-dependent helicase activity
LJF99_02540	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LJF99_02545	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LJF99_02550	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LJF99_02555	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LJF99_02555	COG0131	Imidazoleglycerol-phosphate dehydratase
LJF99_02560	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LJF99_02565	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LJF99_02570	COG3437	response regulator, receiver
LJF99_02575	COG2199	diguanylate cyclase activity
LJF99_02580	COG0784	Response regulator, receiver
LJF99_02580	COG2198	Histidine kinase
LJF99_02580	COG2205	protein histidine kinase activity
LJF99_02585	COG0107	imidazoleglycerol-phosphate synthase activity
LJF99_02590	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LJF99_02590	COG0140	phosphoribosyl-ATP diphosphatase activity
LJF99_02600	COG2378	regulation of single-species biofilm formation
LJF99_02655	COG2823	Periplasmic or secreted lipoprotein
LJF99_02660	COG5001	Diguanylate cyclase
LJF99_02660	COG2203	Gaf domain
LJF99_02660	COG3706	GGDEF domain
LJF99_02660	COG4251	negative regulation of phosphorylation
LJF99_02665	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJF99_02670	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJF99_02675	COG1129	ABC transporter
LJF99_02680	COG1879	ABC-type sugar transport system periplasmic component
LJF99_02700	COG2824	Alkylphosphonate utilization operon protein PhnA
LJF99_02705	COG1250	3-hydroxyacyl-CoA dehydrogenase
LJF99_02705	COG1024	Enoyl-CoA hydratase
LJF99_02710	COG0183	Belongs to the thiolase family
LJF99_02715	COG0714	Associated with various cellular activities
LJF99_02755	COG2067	long-chain fatty acid transport protein
LJF99_02760	COG2067	long-chain fatty acid transport protein
LJF99_02765	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LJF99_02785	COG3123	guanosine phosphorylase activity
LJF99_02790	COG1760	l-serine dehydratase
LJF99_02795	COG1760	l-serine dehydratase
LJF99_02800	COG2951	lytic endotransglycosylase activity
LJF99_02805	COG3100	YcgL domain-containing protein
LJF99_02810	COG0850	regulation of cytokinetic process
LJF99_02815	COG2894	cell division
LJF99_02820	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
LJF99_02825	COG3099	Belongs to the UPF0263 family
LJF99_02830	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LJF99_02875	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LJF99_02880	COG0697	spore germination
LJF99_02885	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
LJF99_02890	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJF99_02900	COG0307	riboflavin synthase, alpha
LJF99_02910	COG0534	Mate efflux family protein
LJF99_02935	COG0417	DNA replication proofreading
LJF99_02945	COG2199	diguanylate cyclase activity
LJF99_02945	COG2203	Gaf domain
LJF99_02960	COG1560	Kdo2-lipid A biosynthetic process
LJF99_02965	COG1560	Kdo2-lipid A biosynthetic process
LJF99_02975	COG0583	DNA-binding transcription factor activity
LJF99_02980	COG0673	inositol 2-dehydrogenase activity
LJF99_02985	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LJF99_02990	COG0583	DNA-binding transcription factor activity
LJF99_02995	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_03005	COG1288	antiporter activity
LJF99_03015	COG3134	Outer membrane lipoprotein
LJF99_03035	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJF99_03055	COG4681	YaeQ
LJF99_03115	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LJF99_03120	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LJF99_03125	COG3095	Involved in chromosome condensation, segregation and cell cycle progression. May participate in facilitating chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division. Probably acts via its interaction with MukB and MukF
LJF99_03135	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LJF99_03140	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LJF99_03150	COG0205	6-phosphofructokinase activity
LJF99_03200	COG1011	Hydrolase
LJF99_03205	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LJF99_03245	COG3593	DNA synthesis involved in DNA repair
LJF99_03260	COG0583	DNA-binding transcription factor activity
LJF99_03265	COG0730	response to heat
LJF99_03270	COG3148	PFAM DTW domain containing protein
LJF99_03280	COG1181	Belongs to the D-alanine--D-alanine ligase family
LJF99_03290	COG0386	Belongs to the glutathione peroxidase family
LJF99_03295	COG0513	Belongs to the DEAD box helicase family
LJF99_03310	COG1742	UPF0060 membrane protein
LJF99_03350	COG2329	Antibiotic biosynthesis monooxygenase
LJF99_03355	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
LJF99_03375	COG3243	poly(R)-hydroxyalkanoic acid synthase
LJF99_03385	COG2501	S4 domain
LJF99_03395	COG1132	(ABC) transporter
LJF99_03410	COG3118	belongs to the thioredoxin family
LJF99_03415	COG0471	metal ion transport
LJF99_03420	COG0058	SHG alpha-glucan phosphorylase activity
LJF99_03445	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LJF99_03455	COG0814	amino acid
LJF99_03460	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LJF99_03465	COG0514	ATP-dependent DNA helicase (RecQ)
LJF99_03470	COG2766	serine protein kinase
LJF99_03480	COG2719	SpoVR family
LJF99_03485	COG2186	Transcriptional regulator
LJF99_03490	COG3067	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LJF99_03495	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LJF99_03500	COG0586	Pfam SNARE associated Golgi protein
LJF99_03510	COG0556	nucleotide-excision repair
LJF99_03520	COG0569	domain protein
LJF99_03520	COG2985	domain, Protein
LJF99_03525	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LJF99_03545	COG4565	transcriptional regulatory protein
LJF99_03550	COG3290	protein histidine kinase activity
LJF99_03555	COG1940	carbohydrate kinase activity
LJF99_03555	COG1846	Transcriptional regulator
LJF99_03560	COG0840	transmembrane signaling receptor activity
LJF99_03565	COG3012	SEC-C Motif Domain Protein
LJF99_03570	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LJF99_03575	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
LJF99_03580	COG0247	lactate metabolic process
LJF99_03590	COG3303	Catalyzes the reduction of nitrite to ammonia, consuming six electrons in the process
LJF99_03595	COG0437	4 iron, 4 sulfur cluster binding
LJF99_03600	COG3301	Polysulphide reductase, NrfD
LJF99_03615	COG4235	cytochrome complex assembly
LJF99_03615	COG3088	subunit of a heme lyase
LJF99_03630	COG3033	Beta-eliminating lyase
LJF99_03640	COG3046	protein related to deoxyribodipyrimidine photolyase
LJF99_03645	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJF99_03670	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
LJF99_03675	COG0583	DNA-binding transcription factor activity
LJF99_03685	COG4774	siderophore transport
LJF99_03690	COG2207	Transcriptional regulator
LJF99_03690	COG3708	Transcriptional regulator
LJF99_03700	COG0583	DNA-binding transcription factor activity
LJF99_03705	COG2910	NAD(P)H-binding
LJF99_03720	COG0612	Peptidase, M16
LJF99_03725	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LJF99_03730	COG1944	ATP diphosphatase activity
LJF99_03735	COG2116	formate transmembrane transporter activity
LJF99_03740	COG1882	Formate acetyltransferase
LJF99_03745	COG2983	Belongs to the UPF0260 family
LJF99_03750	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LJF99_03755	COG0045	succinate-CoA ligase (ADP-forming) activity
LJF99_03760	COG0508	dehydrogenase complex catalyzes the overall conversion of
LJF99_03765	COG0567	Dehydrogenase, E1 component
LJF99_03775	COG1053	succinate dehydrogenase
LJF99_03780	COG2142	Succinate dehydrogenase hydrophobic membrane anchor
LJF99_03805	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJF99_03810	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
LJF99_03810	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJF99_03820	COG3069	C4-dicarboxylate transmembrane transporter activity
LJF99_03835	COG1451	nucleotide metabolic process
LJF99_03850	COG0254	rRNA binding
LJF99_03855	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LJF99_03860	COG0469	pyruvate kinase activity
LJF99_03870	COG1874	Beta-galactosidase
LJF99_03875	COG3867	Arabinogalactan endo-beta-1,4-galactanase
LJF99_03880	COG3833	ABC-type maltose transport systems, permease component
LJF99_03885	COG1175	transmembrane transport
LJF99_03890	COG2182	Extracellular solute-binding protein
LJF99_03935	COG4580	involved in the transport of maltose and maltodextrins
LJF99_03940	COG1609	Transcriptional regulator
LJF99_03945	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LJF99_03950	COG1085	galactose-1-phosphate uridylyltransferase
LJF99_03955	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LJF99_03965	COG1172	Belongs to the binding-protein-dependent transport system permease family
LJF99_03970	COG1129	ABC transporter
LJF99_03975	COG1879	ABC-type sugar transport system periplasmic component
LJF99_03980	COG1069	ribulokinase activity
LJF99_03990	COG2160	L-arabinose isomerase activity
LJF99_03995	COG0583	DNA-binding transcription factor activity
LJF99_04005	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LJF99_04020	COG2925	Exonuclease
LJF99_04035	COG1380	Effector of murein hydrolase LrgA
LJF99_04040	COG1346	cytolysis
LJF99_04045	COG0295	cytidine deaminase activity
LJF99_04050	COG1022	Amp-dependent synthetase and ligase
LJF99_04065	COG0861	Integral membrane protein TerC family
LJF99_04075	COG2199	diguanylate cyclase activity
LJF99_04090	COG2154	pterin-4-alpha-carbinolamine dehydratase
LJF99_04100	COG3768	UPF0283 membrane protein
LJF99_04105	COG3106	COG3106 Predicted ATPase
LJF99_04120	COG1842	Phage shock protein A
LJF99_04125	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LJF99_04135	COG4168	peptide transport system, permease
LJF99_04140	COG4171	peptide transport system, permease
LJF99_04145	COG4172	Belongs to the ABC transporter superfamily
LJF99_04150	COG4172	Belongs to the ABC transporter superfamily
LJF99_04160	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LJF99_04165	COG1286	toxin biosynthetic process
LJF99_04170	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LJF99_04175	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LJF99_04180	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LJF99_04185	COG0531	amino acid
LJF99_04185	COG1674	ftsk spoiiie
LJF99_04205	COG0492	ferredoxin-NADP+ reductase activity
LJF99_04210	COG3706	GGDEF domain
LJF99_04215	COG3134	Outer membrane lipoprotein
LJF99_04220	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
LJF99_04225	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
LJF99_04230	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LJF99_04235	COG0542	response to heat
LJF99_04240	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
LJF99_04245	COG1278	Cold shock
LJF99_04250	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LJF99_04310	COG3829	transcription factor binding
LJF99_04380	COG0659	secondary active sulfate transmembrane transporter activity
LJF99_04425	COG0697	spore germination
LJF99_04430	COG4657	Part of a membrane complex involved in electron transport
LJF99_04435	COG2878	Part of a membrane complex involved in electron transport
LJF99_04445	COG4658	electron transport chain
LJF99_04450	COG4659	FMN binding
LJF99_04455	COG4660	Part of a membrane complex involved in electron transport
LJF99_04460	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LJF99_04465	COG0346	lactoylglutathione lyase activity
LJF99_04480	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LJF99_04485	COG2056	Na+-H+ antiporter family
LJF99_04490	COG3300	MHYT domain
LJF99_04490	COG5001	Diguanylate cyclase
LJF99_04500	COG0513	Belongs to the DEAD box helicase family
LJF99_04505	COG2050	protein possibly involved in aromatic compounds catabolism
LJF99_04515	COG0247	lactate metabolic process
LJF99_04515	COG0277	FAD linked oxidase domain protein
LJF99_04525	COG1253	flavin adenine dinucleotide binding
LJF99_04530	COG1902	pentaerythritol trinitrate reductase activity
LJF99_04540	COG0647	UMP catabolic process
LJF99_04545	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LJF99_04545	COG4651	solute:proton antiporter activity
LJF99_04555	COG0367	asparagine synthase
LJF99_04575	COG0625	glutathione transferase activity
LJF99_04580	COG0625	glutathione transferase activity
LJF99_04605	COG0564	pseudouridine synthase activity
LJF99_04615	COG0840	transmembrane signaling receptor activity
LJF99_04625	COG0670	Belongs to the BI1 family
LJF99_04630	COG1289	transmembrane transporter activity
LJF99_04635	COG2920	part of a sulfur-relay system
LJF99_04640	COG3147	Non-essential cell division protein that could be required for efficient cell constriction
LJF99_04645	COG0285	dihydrofolate synthase activity
LJF99_04650	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LJF99_04655	COG0101	tRNA pseudouridine synthase activity
LJF99_04665	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LJF99_04670	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LJF99_04675	COG0671	phosphoesterase, PA-phosphatase related
LJF99_04680	COG1464	Belongs to the NlpA lipoprotein family
LJF99_04720	COG0574	Belongs to the PEP-utilizing enzyme family
LJF99_04720	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LJF99_04725	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
LJF99_04765	COG0672	)-iron permease
LJF99_04810	COG0577	efflux transmembrane transporter activity
LJF99_04825	COG1285	pathogenesis
LJF99_04865	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJF99_04870	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LJF99_04870	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
LJF99_04875	COG0527	aspartate kinase activity
LJF99_04885	COG1368	sulfuric ester hydrolase activity
LJF99_04890	COG1619	proteins homologs of microcin C7 resistance protein MccF
LJF99_04900	COG0393	Putative heavy-metal-binding
LJF99_04905	COG1252	NADH dehydrogenase
LJF99_04910	COG3150	esterase
LJF99_04925	COG2354	Protein conserved in bacteria
LJF99_04935	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LJF99_04935	COG0047	phosphoribosylformylglycinamidine synthase activity
LJF99_04940	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LJF99_04950	COG1645	bacterial-type flagellum-dependent swarming motility
LJF99_04955	COG1160	GTP binding
LJF99_04960	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJF99_04965	COG2976	Protein conserved in bacteria
LJF99_04970	COG0124	histidyl-tRNA synthetase
LJF99_04975	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
LJF99_04980	COG1426	Protein conserved in bacteria
LJF99_04990	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LJF99_04995	COG0105	UTP biosynthetic process
LJF99_05000	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LJF99_05010	COG0633	Ferredoxin
LJF99_05015	COG0443	Heat shock 70 kDa protein
LJF99_05020	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LJF99_05030	COG0822	iron-sulfur transferase activity
LJF99_05035	COG1104	cysteine desulfurase activity
LJF99_05055	COG3154	lipid carrier protein
LJF99_05060	COG0826	peptidase U32
LJF99_05065	COG0826	peptidase U32
LJF99_05075	COG2897	thiosulfate sulfurtransferase activity
LJF99_05080	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJF99_05085	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LJF99_05090	COG1862	Preprotein translocase
LJF99_05095	COG0343	queuine tRNA-ribosyltransferase activity
LJF99_05100	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LJF99_05105	COG0517	IMP dehydrogenase activity
LJF99_05115	COG3634	alkyl hydroperoxide reductase activity
LJF99_05130	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LJF99_05130	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LJF99_05135	COG0509	glycine decarboxylation via glycine cleavage system
LJF99_05140	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LJF99_05145	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJF99_05150	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJF99_05175	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LJF99_05180	COG0583	DNA-binding transcription factor activity
LJF99_05185	COG2814	Major facilitator Superfamily
LJF99_05190	COG0444	Belongs to the ABC transporter superfamily
LJF99_05195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJF99_05200	COG0601	transmembrane transport
LJF99_05210	COG0625	glutathione transferase activity
LJF99_05220	COG0483	inositol monophosphate 1-phosphatase activity
LJF99_05240	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LJF99_05250	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LJF99_05285	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJF99_05290	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJF99_05305	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJF99_05305	COG0301	tRNA thio-modification
LJF99_05580	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LJF99_05615	COG2974	May be involved in recombination
LJF99_05665	COG0582	viral genome integration into host DNA
LJF99_05675	COG4953	penicillin-binding protein 1C
LJF99_05680	COG2373	Large extracellular alpha-helical protein
LJF99_05695	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LJF99_05730	COG2431	L-lysine efflux transmembrane transporter activity
LJF99_05735	COG3124	Converts holo-ACP to apo-ACP by hydrolytic cleavage of the phosphopantetheine prosthetic group from ACP
LJF99_05745	COG1393	Belongs to the ArsC family
LJF99_05755	COG4783	chaperone-mediated protein folding
LJF99_05760	COG0425	Belongs to the sulfur carrier protein TusA family
LJF99_05765	COG0628	permease
LJF99_05780	COG3842	ATPase activity
LJF99_05785	COG3833	ABC-type maltose transport systems, permease component
LJF99_05790	COG1175	transmembrane transport
LJF99_05795	COG2182	Extracellular solute-binding protein
LJF99_05800	COG3081	Nucleoid-associated protein
LJF99_05805	COG3082	Protein of unknown function (DUF1414)
LJF99_05810	COG3083	sulfuric ester hydrolase activity
LJF99_05815	COG4771	TonB-dependent receptor
LJF99_05820	COG1770	oligopeptidase
LJF99_05840	COG4574	serine-type endopeptidase inhibitor activity
LJF99_05845	COG3085	chromosome segregation
LJF99_05855	COG1605	Chorismate mutase
LJF99_05855	COG0287	Prephenate dehydrogenase
LJF99_05860	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJF99_05865	COG0584	glycerophosphoryl diester phosphodiesterase
LJF99_05870	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LJF99_05880	COG1349	DNA-binding transcription factor activity
LJF99_05885	COG2271	Major facilitator Superfamily
LJF99_05890	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LJF99_05895	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
LJF99_05900	COG0583	DNA-binding transcription factor activity
LJF99_05930	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
LJF99_05935	COG0656	L-ascorbic acid biosynthetic process
LJF99_05940	COG2814	Major facilitator Superfamily
LJF99_05950	COG1294	oxidase, subunit
LJF99_05960	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LJF99_05965	COG2979	Protein of unknown function (DUF533)
LJF99_05985	COG0583	DNA-binding transcription factor activity
LJF99_05995	COG2807	transmembrane transport
LJF99_06000	COG1187	pseudouridine synthase activity
LJF99_06005	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LJF99_06015	COG0346	lactoylglutathione lyase activity
LJF99_06025	COG1061	Type III restriction enzyme res subunit
LJF99_06045	COG1166	arginine decarboxylase activity
LJF99_06050	COG2195	Cleaves the N-terminal amino acid of tripeptides
LJF99_06075	COG2353	YceI-like domain
LJF99_06080	COG0583	DNA-binding transcription factor activity
LJF99_06090	COG2759	Belongs to the formate--tetrahydrofolate ligase family
LJF99_06095	COG0840	transmembrane signaling receptor activity
LJF99_06100	COG0302	gtp cyclohydrolase
LJF99_06110	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LJF99_06135	COG0596	Alpha beta hydrolase
LJF99_06140	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
LJF99_06155	COG0314	molybdopterin synthase activity
LJF99_06160	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LJF99_06165	COG0315	cyclic pyranopterin monophosphate synthase activity
LJF99_06170	COG0521	Mo-molybdopterin cofactor biosynthetic process
LJF99_06175	COG3005	denitrification pathway
LJF99_06185	COG0348	domain, Protein
LJF99_06190	COG0437	4 iron, 4 sulfur cluster binding
LJF99_06195	COG0243	molybdopterin cofactor binding
LJF99_06205	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJF99_06210	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LJF99_06215	COG3850	Histidine kinase
LJF99_06220	COG2197	response regulator
LJF99_06250	COG0121	glutamine amidotransferase
LJF99_06255	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LJF99_06260	COG1960	acyl-CoA dehydrogenase activity
LJF99_06265	COG0784	Response regulator, receiver
LJF99_06265	COG3437	response regulator, receiver
LJF99_06275	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LJF99_06280	COG0328	RNA-DNA hybrid ribonuclease activity
LJF99_06285	COG2226	methyltransferase
LJF99_06290	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LJF99_06295	COG0741	lytic transglycosylase activity
LJF99_06295	COG1388	LysM domain
LJF99_06300	COG3021	interspecies interaction between organisms
LJF99_06305	COG1607	acyl-coa hydrolase
LJF99_06330	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LJF99_06345	COG2911	Protein conserved in bacteria
LJF99_06350	COG0729	surface antigen
LJF99_06365	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LJF99_06370	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LJF99_06380	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LJF99_06385	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJF99_06390	COG4134	Bacterial extracellular solute-binding protein
LJF99_06395	COG4135	transport system, permease component
LJF99_06400	COG4136	ATPase activity
LJF99_06405	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LJF99_06410	COG2951	lytic endotransglycosylase activity
LJF99_06415	COG1846	Transcriptional regulator
LJF99_06425	COG0033	Phosphoglucomutase
LJF99_06430	COG3057	Negative regulator of replication initiation, which contributes to regulation of DNA replication and ensures that replication initiation occurs exactly once per chromosome per cell cycle. Binds to pairs of hemimethylated GATC sequences in the oriC region, thus preventing assembly of replication proteins and re- initiation at newly replicated origins. Repression is relieved when the region becomes fully methylated
LJF99_06435	COG0596	Alpha beta hydrolase
LJF99_06450	COG0716	FMN binding
LJF99_06460	COG0735	belongs to the Fur family
LJF99_06465	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LJF99_06475	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJF99_06475	COG2190	(PTS) system
LJF99_06475	COG1263	PTS System
LJF99_06480	COG0363	glucosamine-6-phosphate deaminase activity
LJF99_06485	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LJF99_06490	COG1940	carbohydrate kinase activity
LJF99_06490	COG1846	Transcriptional regulator
LJF99_06520	COG0438	transferase activity, transferring glycosyl groups
LJF99_06535	COG0604	alcohol dehydrogenase
LJF99_06535	COG3321	synthase
LJF99_06560	COG1484	DNA-dependent DNA replication
LJF99_06565	COG4584	PFAM Integrase catalytic
LJF99_06575	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LJF99_06595	COG0217	transcriptional regulatory protein
LJF99_06600	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LJF99_06610	COG4106	trans-aconitate 2-methyltransferase activity
LJF99_06615	COG0500	methyltransferase
LJF99_06635	COG0450	alkyl hydroperoxide reductase
LJF99_06645	COG0583	DNA-binding transcription factor activity
LJF99_06655	COG0791	NLP P60 protein
LJF99_06670	COG1309	transcriptional regulator
LJF99_06710	COG0534	Mate efflux family protein
LJF99_06720	COG2841	Protein conserved in bacteria
LJF99_06735	COG0633	Ferredoxin
LJF99_06735	COG3217	Mosc domain protein beta barrel domain protein
LJF99_06735	COG0633	Ferredoxin
LJF99_06735	COG3217	Mosc domain protein beta barrel domain protein
LJF99_06745	COG0501	Belongs to the peptidase M48B family
LJF99_06750	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LJF99_06755	COG1073	alpha beta
LJF99_06755	COG2226	methyltransferase
LJF99_06760	COG0156	8-amino-7-oxononanoate synthase activity
LJF99_06765	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LJF99_06785	COG0017	Asparaginyl-tRNA synthetase
LJF99_06790	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LJF99_06805	COG0583	DNA-binding transcription factor activity
LJF99_06810	COG1393	Belongs to the ArsC family
LJF99_06815	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LJF99_06820	COG1876	peptidase activity
LJF99_06830	COG3263	regulation of cellular component size
LJF99_06850	COG1280	lysine exporter protein (LysE YggA)
LJF99_06855	COG0840	transmembrane signaling receptor activity
LJF99_06875	COG1957	nucleoside hydrolase
LJF99_06890	COG1454	alcohol dehydrogenase
LJF99_06930	COG2894	cell division
LJF99_06940	COG4964	Belongs to the GSP D family
LJF99_06975	COG2913	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJF99_06980	COG0702	epimerase
LJF99_06985	COG2914	Belongs to the UPF0125 (RnfH) family
LJF99_06990	COG2867	negative regulation of translational initiation
LJF99_06995	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LJF99_07070	COG0583	DNA-binding transcription factor activity
LJF99_07075	COG2610	gluconate transmembrane transporter activity
LJF99_07080	COG3048	D-serine ammonia-lyase activity
LJF99_07090	COG0538	isocitrate dehydrogenase activity
LJF99_07095	COG2207	Transcriptional regulator
LJF99_07125	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LJF99_07130	COG1263	PTS System
LJF99_07130	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJF99_07135	COG1609	Transcriptional regulator
LJF99_07155	COG2814	Major facilitator Superfamily
LJF99_07160	COG0109	protoheme IX farnesyltransferase activity
LJF99_07165	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LJF99_07170	COG1845	cytochrome c oxidase, subunit III
LJF99_07175	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LJF99_07180	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LJF99_07235	COG0708	Exodeoxyribonuclease III
LJF99_07260	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_07265	COG3696	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJF99_07275	COG0095	Lipoate-protein ligase
LJF99_07320	COG1285	pathogenesis
LJF99_07350	COG0484	heat shock protein binding
LJF99_07355	COG0443	Heat shock 70 kDa protein
LJF99_07360	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LJF99_07365	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LJF99_07370	COG0497	DNA recombination
LJF99_07375	COG1227	inorganic diphosphatase activity
LJF99_07385	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_07390	COG0577	efflux transmembrane transporter activity
LJF99_07390	COG1136	(ABC) transporter
LJF99_07395	COG1538	Outer membrane efflux protein
LJF99_07400	COG2375	cellular response to nickel ion
LJF99_07405	COG0722	Stereospecific condensation of phosphoenolpyruvate (PEP) and D-erythrose-4-phosphate (E4P) giving rise to 3-deoxy-D- arabino-heptulosonate-7-phosphate (DAHP)
LJF99_07410	COG3328	transposase activity
LJF99_07415	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_07440	COG1917	Cupin 2, conserved barrel domain protein
LJF99_07440	COG2169	Transcriptional regulator
LJF99_07450	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJF99_07455	COG1917	Cupin 2, conserved barrel domain protein
LJF99_07455	COG1396	sequence-specific DNA binding
LJF99_07470	COG0531	amino acid
LJF99_07475	COG0531	amino acid
LJF99_07480	COG1283	sodium-dependent phosphate transmembrane transporter activity
LJF99_07490	COG3384	dioxygenase
LJF99_07505	COG0813	purine-nucleoside phosphorylase activity
LJF99_07525	COG1943	Transposase
LJF99_07555	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LJF99_07560	COG0083	homoserine kinase activity
LJF99_07570	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
LJF99_07575	COG4579	[isocitrate dehydrogenase (NADP+)] phosphatase activity
LJF99_07590	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LJF99_07600	COG0745	RESPONSE REGULATOR receiver
LJF99_07615	COG4988	ABC transporter
LJF99_07620	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LJF99_07640	COG1720	tRNA m6t6A37 methyltransferase activity
LJF99_07660	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LJF99_07665	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_07675	COG2190	(PTS) system
LJF99_07690	COG3038	cytochrome b561
LJF99_07700	COG0419	ATPase involved in DNA repair
LJF99_07705	COG0420	3'-5' exonuclease activity
LJF99_07715	COG2974	May be involved in recombination
LJF99_07720	COG0405	Gamma-glutamyltransferase
LJF99_07740	COG0469	pyruvate kinase activity
LJF99_07745	COG3264	Mechanosensitive ion channel
LJF99_07745	COG1196	nuclear chromosome segregation
LJF99_07775	COG2801	Transposase and inactivated derivatives
LJF99_07780	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LJF99_07790	COG3852	Histidine kinase
LJF99_07805	COG4662	Binding-protein-dependent transport system inner membrane component
LJF99_07815	COG0746	molybdenum cofactor guanylyltransferase activity
LJF99_07820	COG0303	'Molybdopterin
LJF99_07825	COG1289	transmembrane transporter activity
LJF99_07830	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LJF99_07865	COG0784	Response regulator, receiver
LJF99_07865	COG2205	protein histidine kinase activity
LJF99_07875	COG0601	transmembrane transport
LJF99_07880	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LJF99_07885	COG0444	Belongs to the ABC transporter superfamily
LJF99_07890	COG4608	Belongs to the ABC transporter superfamily
LJF99_07900	COG2971	BadF BadG BcrA BcrD
LJF99_07910	COG0840	transmembrane signaling receptor activity
LJF99_07930	COG3724	N-succinylarginine dihydrolase activity
LJF99_07935	COG0616	signal peptide processing
LJF99_07940	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_07945	COG0583	DNA-binding transcription factor activity
LJF99_07955	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LJF99_07965	COG0583	DNA-binding transcription factor activity
LJF99_07970	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LJF99_07975	COG1881	PFAM PEBP family protein
LJF99_07985	COG0366	Alpha amylase catalytic
LJF99_08035	COG0037	tRNA processing
LJF99_08040	COG3590	peptidase
LJF99_08050	COG0488	(ABC) transporter
LJF99_08060	COG0531	amino acid
LJF99_08065	COG0814	amino acid
LJF99_08080	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
LJF99_08085	COG1982	Orn Lys Arg decarboxylase major
LJF99_08090	COG0531	amino acid
LJF99_08095	COG3710	Transcriptional regulator
LJF99_08100	COG0825	malonyl-CoA metabolic process
LJF99_08110	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LJF99_08115	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJF99_08120	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJF99_08125	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LJF99_08130	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
LJF99_08145	COG0750	zinc metalloprotease
LJF99_08150	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LJF99_08155	COG0575	Belongs to the CDS family
LJF99_08160	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
LJF99_08165	COG0233	cytoplasmic translational termination
LJF99_08170	COG0528	UMP kinase activity
LJF99_08175	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LJF99_08180	COG0052	Belongs to the universal ribosomal protein uS2 family
LJF99_08185	COG0024	Methionine aminopeptidase
LJF99_08195	COG2171	N-acyltransferase activity
LJF99_08205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJF99_08205	COG1263	PTS System
LJF99_08225	COG4580	involved in the transport of maltose and maltodextrins
LJF99_08235	COG0564	pseudouridine synthase activity
LJF99_08240	COG3098	single-species biofilm formation
LJF99_08265	COG5595	Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310)
LJF99_08275	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LJF99_08275	COG2904	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
LJF99_08290	COG1611	Belongs to the LOG family
LJF99_08295	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LJF99_08300	COG0473	3-isopropylmalate dehydrogenase activity
LJF99_08310	COG2933	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA methyltransferase RlmE family. RlmM subfamily
LJF99_08315	COG2363	Small membrane protein
LJF99_08325	COG0583	DNA-binding transcription factor activity
LJF99_08330	COG0840	transmembrane signaling receptor activity
LJF99_08335	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LJF99_08350	COG1477	protein flavinylation
LJF99_08355	COG2871	sodium ion transport
LJF99_08360	COG2209	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJF99_08365	COG1347	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJF99_08370	COG2869	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJF99_08375	COG1805	sodium ion transport
LJF99_08380	COG1726	NQR complex catalyzes the reduction of ubiquinone-1 to ubiquinol by two successive reactions, coupled with the transport of Na( ) ions from the cytoplasm to the periplasm. NqrA to NqrE are probably involved in the second step, the conversion of ubisemiquinone to ubiquinol
LJF99_08390	COG0271	Belongs to the BolA IbaG family
LJF99_08395	COG2813	Specifically methylates the guanine in position
LJF99_08405	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LJF99_08415	COG2211	Major facilitator Superfamily
LJF99_08420	COG3248	Nucleoside-binding outer membrane protein
LJF99_08425	COG1666	GTP binding
LJF99_08430	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LJF99_08455	COG3459	Glycosyltransferase 36 associated
LJF99_08465	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LJF99_08465	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LJF99_08470	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LJF99_08480	COG1151	hydroxylamine reductase activity
LJF99_08485	COG0783	Belongs to the Dps family
LJF99_08510	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LJF99_08525	COG0300	oxidoreductase activity
LJF99_08535	COG0415	Belongs to the DNA photolyase family
LJF99_08540	COG0789	Transcriptional regulator
LJF99_08545	COG3272	Protein of unknown function (DUF1722)
LJF99_08575	COG1605	Chorismate mutase
LJF99_08575	COG0077	Prephenate dehydratase
LJF99_08600	COG2133	pyrroloquinoline quinone binding
LJF99_08620	COG0300	oxidoreductase activity
LJF99_08645	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LJF99_08660	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LJF99_08675	COG3813	Protein conserved in bacteria
LJF99_08690	COG1280	lysine exporter protein (LysE YggA)
LJF99_08700	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LJF99_08710	COG0745	RESPONSE REGULATOR receiver
LJF99_08720	COG2198	Histidine kinase
LJF99_08720	COG0643	Histidine kinase
LJF99_08730	COG0835	chemotaxis
LJF99_08735	COG0840	transmembrane signaling receptor activity
LJF99_08745	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
LJF99_08750	COG2201	protein-glutamate methylesterase activity
LJF99_08755	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LJF99_08785	COG2197	response regulator
LJF99_08790	COG2197	response regulator
LJF99_08820	COG2200	EAL domain
LJF99_08820	COG2199	diguanylate cyclase activity
LJF99_08820	COG2203	Gaf domain
LJF99_08825	COG0826	peptidase U32
LJF99_08830	COG1145	4fe-4S ferredoxin, iron-sulfur binding domain protein
LJF99_08835	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LJF99_08855	COG2200	EAL domain
LJF99_08860	COG0737	Belongs to the 5'-nucleotidase family
LJF99_08880	COG2204	response regulator
LJF99_08885	COG0545	Peptidyl-prolyl cis-trans isomerase
LJF99_08900	COG1047	Peptidyl-prolyl cis-trans
LJF99_08905	COG3529	nucleic-acid-binding protein containing a Zn-ribbon domain
LJF99_08915	COG0784	Response regulator, receiver
LJF99_08915	COG0835	chemotaxis
LJF99_08920	COG0429	hydrolase of the alpha beta-hydrolase fold
LJF99_08925	COG3706	GGDEF domain
LJF99_08925	COG5001	Diguanylate cyclase
LJF99_08925	COG4251	negative regulation of phosphorylation
LJF99_08925	COG2203	Gaf domain
LJF99_08930	COG3089	Belongs to the UPF0270 family
LJF99_08940	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LJF99_08945	COG0463	Glycosyl transferase, family 2
LJF99_08955	COG0726	polysaccharide deacetylase
LJF99_08960	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
LJF99_08965	COG2076	Multidrug Resistance protein
LJF99_08970	COG2076	Multidrug Resistance protein
LJF99_08975	COG3954	Phosphoribulokinase
LJF99_08990	COG1765	OsmC-like protein
LJF99_09005	COG3397	chitin binding
LJF99_09030	COG3655	Transcriptional regulator
LJF99_09040	COG2814	Major facilitator Superfamily
LJF99_09045	COG4771	TonB-dependent receptor
LJF99_09065	COG0748	coenzyme F420 binding
LJF99_09070	COG3721	Heme iron utilization protein
LJF99_09080	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJF99_09105	COG0741	lytic transglycosylase activity
LJF99_09110	COG0488	(ABC) transporter
LJF99_09125	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
LJF99_09130	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LJF99_09135	COG3178	'Phosphotransferase
LJF99_09140	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
LJF99_09150	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LJF99_09155	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LJF99_09160	COG2967	ApaG domain
LJF99_09165	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LJF99_09180	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LJF99_09190	COG2206	PFAM metal-dependent phosphohydrolase, HD sub domain
LJF99_09200	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_09205	COG3314	Sporulation integral membrane protein YlbJ
LJF99_09210	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LJF99_09215	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LJF99_09220	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LJF99_09225	COG0142	geranyltranstransferase activity
LJF99_09230	COG3242	Uncharacterized protein conserved in bacteria (DUF2065)
LJF99_09235	COG0330	HflC and HflK could
LJF99_09240	COG0330	HflC and HflK could
LJF99_09245	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LJF99_09250	COG1923	regulation of RNA biosynthetic process
LJF99_09255	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LJF99_09260	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LJF99_09270	COG0802	atpase or kinase
LJF99_09275	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
LJF99_09275	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
LJF99_09305	COG2011	ABC-type metal ion transport system permease component
LJF99_09310	COG1464	Belongs to the NlpA lipoprotein family
LJF99_09320	COG0840	transmembrane signaling receptor activity
LJF99_09335	COG4999	Histidine kinase
LJF99_09335	COG3850	Histidine kinase
LJF99_09335	COG2205	protein histidine kinase activity
LJF99_09335	COG3437	response regulator, receiver
LJF99_09350	COG2198	Histidine kinase
LJF99_09350	COG0784	Response regulator, receiver
LJF99_09350	COG5002	protein histidine kinase activity
LJF99_09385	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
LJF99_09390	COG3317	Gram-negative-bacterium-type cell outer membrane assembly
LJF99_09400	COG2716	regulation of RNA biosynthetic process
LJF99_09405	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LJF99_09410	COG3013	Belongs to the UPF0304 family
LJF99_09420	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LJF99_09425	COG0857	belongs to the CobB CobQ family
LJF99_09425	COG0280	phosphate acetyltransferase
LJF99_09430	COG0440	acetolactate synthase activity
LJF99_09435	COG0028	Belongs to the TPP enzyme family
LJF99_09450	COG0671	phosphoesterase, PA-phosphatase related
LJF99_09460	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LJF99_09465	COG0473	3-isopropylmalate dehydrogenase activity
LJF99_09470	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LJF99_09475	COG0066	3-isopropylmalate dehydratase activity
LJF99_09490	COG4143	(ABC) transporter
LJF99_09495	COG1178	ABC-type Fe3 transport system permease component
LJF99_09500	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
LJF99_09505	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LJF99_09515	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LJF99_09545	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LJF99_09550	COG0564	pseudouridine synthase activity
LJF99_09560	COG3300	MHYT domain
LJF99_09560	COG5001	Diguanylate cyclase
LJF99_09570	COG0459	protein refolding
LJF99_09575	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LJF99_09580	COG0534	Mate efflux family protein
LJF99_09585	COG3030	protein affecting phage T7 exclusion by the F plasmid
LJF99_09590	COG1027	Aspartate ammonia-lyase
LJF99_09595	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LJF99_09605	COG0477	Major facilitator Superfamily
LJF99_09620	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJF99_09625	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJF99_09650	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LJF99_09655	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LJF99_09660	COG3036	rescue of stalled ribosome
LJF99_09665	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LJF99_09675	COG0138	bifunctional purine biosynthesis protein purh
LJF99_09680	COG0151	Belongs to the GarS family
LJF99_09720	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LJF99_09725	COG0358	DNA primase activity
LJF99_09730	COG1610	YqeY-like protein
LJF99_09735	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LJF99_09740	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
LJF99_09750	COG1388	LysM domain
LJF99_09750	COG4942	peptidase
LJF99_09755	COG1238	metal cluster binding
LJF99_09760	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
LJF99_09765	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
LJF99_09770	COG0585	pseudouridine synthase activity
LJF99_09780	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
LJF99_09785	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
LJF99_09790	COG0148	phosphopyruvate hydratase activity
LJF99_09795	COG0504	CTP synthase activity
LJF99_09800	COG3956	TIGRFAM MazG family protein
LJF99_09805	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LJF99_09810	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LJF99_09820	COG4807	Protein conserved in bacteria
LJF99_09825	COG3023	N-Acetylmuramoyl-L-alanine amidase
LJF99_09830	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
LJF99_09835	COG1381	Involved in DNA repair and RecF pathway recombination
LJF99_09845	COG0571	ribonuclease III activity
LJF99_09855	COG0481	GTPase activity
LJF99_09870	COG3073	An anti-sigma factor for extracytoplasmic function (ECF) sigma factor sigma-E (RpoE). ECF sigma factors are held in an inactive form by an anti-sigma factor until released by regulated intramembrane proteolysis (RIP). RIP occurs when an extracytoplasmic signal triggers a concerted proteolytic cascade to transmit information and elicit cellular responses. The membrane-spanning regulatory substrate protein is first cut periplasmically (site-1 protease, S1P, DegS), then within the membrane itself (site-2 protease, S2P, RseP), while cytoplasmic proteases finish degrading the anti-sigma factor, liberating sigma-E
LJF99_09875	COG1595	DNA-templated transcription, initiation
LJF99_09880	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LJF99_09930	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LJF99_09935	COG0191	fructose-bisphosphate aldolase activity
LJF99_09940	COG0126	phosphoglycerate kinase activity
LJF99_09945	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LJF99_09950	COG1940	carbohydrate kinase activity
LJF99_09965	COG3054	Bacterial protein of unknown function (YtfJ_HI0045)
LJF99_09980	COG1136	(ABC) transporter
LJF99_10000	COG0840	transmembrane signaling receptor activity
LJF99_10015	COG0529	Catalyzes the synthesis of activated sulfate
LJF99_10020	COG0471	metal ion transport
LJF99_10020	COG3273	potassium ion transport
LJF99_10025	COG2895	sulfate adenylyltransferase (ATP) activity
LJF99_10030	COG0175	sulfate reduction
LJF99_10035	COG1648	precorrin-2 dehydrogenase activity
LJF99_10035	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LJF99_10040	COG0330	HflC and HflK could
LJF99_10045	COG1585	Membrane protein implicated in regulation of membrane protease activity
LJF99_10050	COG0517	IMP dehydrogenase activity
LJF99_10050	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LJF99_10055	COG0488	(ABC) transporter
LJF99_10065	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
LJF99_10135	COG0789	Transcriptional regulator
LJF99_10145	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LJF99_10150	COG1376	ErfK ybiS ycfS ynhG family protein
LJF99_10155	COG0668	transmembrane transport
LJF99_10165	COG2731	YhcH YjgK YiaL family protein
LJF99_10175	COG1794	racemase activity, acting on amino acids and derivatives
LJF99_10215	COG0733	neurotransmitter:sodium symporter activity
LJF99_10225	COG0733	neurotransmitter:sodium symporter activity
LJF99_10240	COG0561	phosphatase activity
LJF99_10275	COG1846	Transcriptional regulator
LJF99_10280	COG1764	response to oxidative stress
LJF99_10285	COG2130	NADP-dependent
LJF99_10290	COG0494	nUDIX hydrolase
LJF99_10305	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LJF99_10310	COG1349	DNA-binding transcription factor activity
LJF99_10320	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_10335	COG3730	PTS system glucitol sorbitol-specific
LJF99_10340	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
LJF99_10360	COG2982	Protein involved in outer membrane biogenesis
LJF99_10365	COG1505	serine-type exopeptidase activity
LJF99_10370	COG1136	(ABC) transporter
LJF99_10370	COG0577	efflux transmembrane transporter activity
LJF99_10375	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_10380	COG0745	RESPONSE REGULATOR receiver
LJF99_10385	COG2205	protein histidine kinase activity
LJF99_10390	COG2816	NAD+ diphosphatase activity
LJF99_10455	COG1912	Pfam S-adenosyl-l-methionine hydroxide adenosyltransferase
LJF99_10475	COG0513	Belongs to the DEAD box helicase family
LJF99_10500	COG2957	Belongs to the agmatine deiminase family
LJF99_10510	COG4221	oxidoreductase activity
LJF99_10525	COG1024	Enoyl-CoA hydratase
LJF99_10535	COG0110	maltose O-acetyltransferase activity
LJF99_10545	COG4166	transmembrane transport
LJF99_10560	COG1872	DUF167
LJF99_10565	COG0762	integral membrane protein
LJF99_10570	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LJF99_10575	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LJF99_10590	COG3022	response to hydroperoxide
LJF99_10595	COG0513	Belongs to the DEAD box helicase family
LJF99_10600	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LJF99_10620	COG0735	belongs to the Fur family
LJF99_10625	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LJF99_10640	COG0776	regulation of translation
LJF99_10645	COG3160	Binds RpoD and negatively regulates RpoD-mediated transcription activation by preventing the interaction between the primary sigma factor RpoD with the catalytic core of the RNA polymerase and with promoter DNA. May be involved in replacement of the RNA polymerase sigma subunit from RpoD to RpoS during the transition from exponential growth to the stationary phase
LJF99_10670	COG0560	Phosphoserine phosphatase
LJF99_10680	COG0813	purine-nucleoside phosphorylase activity
LJF99_10685	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LJF99_10690	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LJF99_10695	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LJF99_10705	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJF99_10710	COG0084	hydrolase, TatD family'
LJF99_10715	COG2165	general secretion pathway protein
LJF99_10730	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LJF99_10735	COG0004	ammonium transporteR
LJF99_10785	COG3561	AntA/AntB antirepressor
LJF99_10805	COG1538	Outer membrane efflux protein
LJF99_10810	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LJF99_10810	COG2870	Catalyzes the ADP transfer from ATP to D-glycero-beta-D- manno-heptose 1-phosphate, yielding ADP-D-glycero-beta-D-manno- heptose
LJF99_10815	COG1560	Kdo2-lipid A biosynthetic process
LJF99_10830	COG1392	Phosphate transport regulator
LJF99_10835	COG0306	phosphate transporter
LJF99_10840	COG0617	tRNA 3'-terminal CCA addition
LJF99_10845	COG3409	Peptidoglycan-binding domain 1 protein
LJF99_10845	COG3267	Type II secretory pathway component ExeA
LJF99_10855	COG1194	a g-specific adenine glycosylase
LJF99_10860	COG2924	Could be a mediator in iron transactions between iron acquisition and iron-requiring processes, such as synthesis and or repair of Fe-S clusters in biosynthetic enzymes
LJF99_10870	COG3111	PFAM Bacterial OB fold (BOF) protein
LJF99_10875	COG3240	lipase activity
LJF99_10890	COG3009	Protein conserved in bacteria
LJF99_10895	COG3008	intermembrane lipid transfer
LJF99_10895	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LJF99_10900	COG2995	paraquat-inducible protein a
LJF99_10910	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJF99_10925	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LJF99_10930	COG2813	Specifically methylates the guanine in position
LJF99_10935	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LJF99_10940	COG0297	glycogen (starch) synthase activity
LJF99_10980	COG1757	Na H antiporter
LJF99_10990	COG0110	maltose O-acetyltransferase activity
LJF99_10995	COG0366	Alpha amylase catalytic
LJF99_11015	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJF99_11020	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJF99_11025	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LJF99_11030	COG2723	6-phospho-beta-galactosidase activity
LJF99_11035	COG1447	Phosphotransferase system cellobiose-specific component IIA
LJF99_11040	COG1940	carbohydrate kinase activity
LJF99_11050	COG1609	Transcriptional regulator
LJF99_11060	COG0252	asparaginase activity
LJF99_11075	COG1803	Methylglyoxal synthase
LJF99_11100	COG1444	tRNA N-acetyltransferase activity
LJF99_11105	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_11110	COG0784	Response regulator, receiver
LJF99_11110	COG0835	chemotaxis
LJF99_11120	COG3314	Sporulation integral membrane protein YlbJ
LJF99_11220	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LJF99_11225	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LJF99_11240	COG0477	Major facilitator Superfamily
LJF99_11245	COG0523	cobalamin synthesis protein
LJF99_11255	COG1280	lysine exporter protein (LysE YggA)
LJF99_11265	COG0583	DNA-binding transcription factor activity
LJF99_11270	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_11275	COG2200	EAL domain
LJF99_11280	COG1049	propionate catabolic process, 2-methylcitrate cycle
LJF99_11295	COG0840	transmembrane signaling receptor activity
LJF99_11305	COG3447	MASE1 domain protein
LJF99_11305	COG5001	Diguanylate cyclase
LJF99_11305	COG5002	protein histidine kinase activity
LJF99_11310	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJF99_11315	COG0508	dehydrogenase complex catalyzes the overall conversion of
LJF99_11320	COG2609	component of the pyruvate dehydrogenase (PDH) complex, that catalyzes the overall conversion of pyruvate to acetyl-CoA and CO(2)
LJF99_11325	COG2186	Transcriptional regulator
LJF99_11350	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJF99_11360	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LJF99_11370	COG4582	Cell division factor that enhances FtsZ-ring assembly. Directly interacts with FtsZ and promotes bundling of FtsZ protofilaments, with a reduction in FtsZ GTPase activity
LJF99_11375	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
LJF99_11380	COG0494	nUDIX hydrolase
LJF99_11390	COG0653	protein targeting
LJF99_11400	COG0774	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase activity
LJF99_11405	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LJF99_11410	COG0849	cell division
LJF99_11415	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LJF99_11420	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LJF99_11425	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LJF99_11430	COG0772	Belongs to the SEDS family
LJF99_11435	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LJF99_11440	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LJF99_11445	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LJF99_11455	COG0768	penicillin binding
LJF99_11460	COG3116	cell division
LJF99_11465	COG0275	rRNA processing
LJF99_11470	COG2001	Belongs to the MraZ family
LJF99_11480	COG1388	LysM domain
LJF99_11480	COG0741	lytic transglycosylase activity
LJF99_11485	COG1360	Flagellar Motor Protein
LJF99_11490	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJF99_11520	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LJF99_11535	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LJF99_11565	COG1706	bacterial-type flagellum-dependent cell motility
LJF99_11570	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LJF99_11575	COG4786	Flagellar basal body rod
LJF99_11580	COG4786	Flagellar basal body rod
LJF99_11585	COG1749	Flagellar hook protein flgE
LJF99_11605	COG1815	bacterial-type flagellum-dependent cell motility
LJF99_11615	COG2747	anti-sigma28 factor FlgM
LJF99_11640	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LJF99_11650	COG1677	Flagellar hook-basal body complex protein FliE
LJF99_11675	COG1987	bacterial-type flagellum assembly
LJF99_11700	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LJF99_11705	COG3107	peptidoglycan biosynthetic process
LJF99_11710	COG0792	nuclease activity
LJF99_11715	COG0279	D-glycero-D-manno-heptose 7-phosphate biosynthetic process
LJF99_11720	COG2823	Periplasmic or secreted lipoprotein
LJF99_11725	COG2969	positive regulation of protein catabolic process
LJF99_11730	COG0625	glutathione transferase activity
LJF99_11735	COG2857	Cytochrome c1
LJF99_11740	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LJF99_11745	COG0723	plastoquinol--plastocyanin reductase activity
LJF99_11750	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LJF99_11755	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LJF99_11760	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
LJF99_11770	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LJF99_11775	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LJF99_11805	COG3964	amidohydrolase
LJF99_11825	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_11830	COG1660	Displays ATPase and GTPase activities
LJF99_11835	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_11845	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LJF99_11850	COG1137	ATPase activity
LJF99_11855	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
LJF99_11860	COG3117	lipopolysaccharide transmembrane transporter activity
LJF99_11865	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LJF99_11870	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
LJF99_11870	COG0517	IMP dehydrogenase activity
LJF99_11875	COG1127	ABC transporter
LJF99_11880	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
LJF99_11885	COG1463	ABC-type transport system involved in resistance to organic solvents, periplasmic component
LJF99_11890	COG2854	intermembrane phospholipid transfer
LJF99_11900	COG5007	Belongs to the BolA IbaG family
LJF99_11905	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
LJF99_11910	COG0312	modulator of DNA gyrase
LJF99_11915	COG3028	Belongs to the UPF0307 family
LJF99_11925	COG2926	Belongs to the UPF0265 family
LJF99_11950	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LJF99_11955	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LJF99_11960	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
LJF99_11965	COG0049	tRNA binding
LJF99_11970	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LJF99_11975	COG2168	tRNA wobble position uridine thiolation
LJF99_11980	COG2923	Belongs to the DsrF TusC family
LJF99_11995	COG2964	Protein conserved in bacteria
LJF99_12000	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LJF99_12005	COG0085	RNA polymerase activity
LJF99_12010	COG0222	ribosome binding
LJF99_12015	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LJF99_12020	COG0081	regulation of translation
LJF99_12025	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LJF99_12030	COG0250	Participates in transcription elongation, termination and antitermination
LJF99_12045	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
LJF99_12070	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LJF99_12075	COG0569	domain protein
LJF99_12080	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJF99_12085	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJF99_12090	COG3005	denitrification pathway
LJF99_12095	COG0243	molybdopterin cofactor binding
LJF99_12125	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
LJF99_12130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LJF99_12140	COG2204	response regulator
LJF99_12150	COG2205	protein histidine kinase activity
LJF99_12165	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_12170	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LJF99_12170	COG0617	tRNA 3'-terminal CCA addition
LJF99_12170	COG0517	IMP dehydrogenase activity
LJF99_12185	COG1522	sequence-specific DNA binding
LJF99_12190	COG2502	aspartate--ammonia ligase
LJF99_12195	COG0542	response to heat
LJF99_12205	COG0564	pseudouridine synthase activity
LJF99_12210	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
LJF99_12215	COG0446	pyridine nucleotide-disulphide oxidoreductase
LJF99_12225	COG3681	Belongs to the UPF0597 family
LJF99_12230	COG2964	Protein conserved in bacteria
LJF99_12240	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
LJF99_12245	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
LJF99_12250	COG1979	alcohol dehydrogenase
LJF99_12255	COG2207	Transcriptional regulator
LJF99_12260	COG3040	lipid binding
LJF99_12270	COG0688	phosphatidylethanolamine metabolic process
LJF99_12285	COG0540	Belongs to the ATCase OTCase family
LJF99_12290	COG1781	'de novo' pyrimidine nucleobase biosynthetic process
LJF99_12295	COG1438	arginine binding
LJF99_12300	COG1288	antiporter activity
LJF99_12305	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LJF99_12360	COG1609	Transcriptional regulator
LJF99_12365	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LJF99_12375	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LJF99_12380	COG2017	converts alpha-aldose to the beta-anomer
LJF99_12385	COG0667	Aldo Keto reductase
LJF99_12390	COG1968	undecaprenyl-diphosphatase activity
LJF99_12400	COG1595	DNA-templated transcription, initiation
LJF99_12410	COG0018	arginyl-trna synthetase
LJF99_12420	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LJF99_12425	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LJF99_12440	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LJF99_12455	COG2116	formate transmembrane transporter activity
LJF99_12460	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LJF99_12460	COG1648	precorrin-2 dehydrogenase activity
LJF99_12465	COG2239	Acts as a magnesium transporter
LJF99_12475	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
LJF99_12480	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LJF99_12490	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LJF99_12500	COG0514	ATP-dependent DNA helicase (RecQ)
LJF99_12505	COG2050	protein possibly involved in aromatic compounds catabolism
LJF99_12520	COG2258	MOSC domain
LJF99_12525	COG1177	transmembrane transport
LJF99_12530	COG1176	ABC-type spermidine putrescine transport system, permease component I
LJF99_12535	COG3842	ATPase activity
LJF99_12555	COG0174	glutamine synthetase
LJF99_12570	COG3045	CreA protein
LJF99_12575	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LJF99_12580	COG0443	Heat shock 70 kDa protein
LJF99_12595	COG0366	Alpha amylase catalytic
LJF99_12600	COG1086	Polysaccharide biosynthesis protein
LJF99_12620	COG1442	glycosyl transferase family 8
LJF99_12640	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_12660	COG1083	cytidylyl-transferase
LJF99_12670	COG2089	acid synthase
LJF99_12740	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LJF99_12745	COG0745	RESPONSE REGULATOR receiver
LJF99_12750	COG2205	protein histidine kinase activity
LJF99_12760	COG0281	malic enzyme
LJF99_12765	COG0702	epimerase
LJF99_12770	COG0254	rRNA binding
LJF99_12775	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LJF99_12785	COG1309	transcriptional regulator
LJF99_12805	COG0129	dihydroxy-acid dehydratase activity
LJF99_12815	COG3978	acetolactate synthase activity
LJF99_12830	COG0204	Acyl-transferase
LJF99_12835	COG1683	Conserved Protein
LJF99_12845	COG1335	isochorismatase
LJF99_12855	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LJF99_12860	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LJF99_12865	COG3639	organic phosphonate transmembrane transporter activity
LJF99_12870	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LJF99_12875	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LJF99_12885	COG3084	Protein conserved in bacteria
LJF99_12890	COG5001	Diguanylate cyclase
LJF99_12890	COG2203	Gaf domain
LJF99_12890	COG3706	GGDEF domain
LJF99_12890	COG4251	negative regulation of phosphorylation
LJF99_12905	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LJF99_12915	COG1561	YicC-like family, N-terminal region
LJF99_12945	COG0438	transferase activity, transferring glycosyl groups
LJF99_12950	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LJF99_12965	COG1063	alcohol dehydrogenase
LJF99_12980	COG0210	DNA helicase
LJF99_12985	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LJF99_12990	COG2166	iron-sulfur cluster assembly
LJF99_12995	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LJF99_13025	COG4635	menaquinone-dependent protoporphyrinogen oxidase activity
LJF99_13030	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJF99_13035	COG1739	Uncharacterized protein family UPF0029
LJF99_13040	COG0006	proline dipeptidase activity
LJF99_13045	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LJF99_13050	COG1250	3-hydroxyacyl-CoA dehydrogenase
LJF99_13050	COG1024	Enoyl-CoA hydratase
LJF99_13055	COG0183	Belongs to the thiolase family
LJF99_13080	COG0425	Belongs to the sulfur carrier protein TusA family
LJF99_13085	COG0251	oxidation-reduction process
LJF99_13090	COG2885	chlorophyll binding
LJF99_13095	COG2818	Glycosylase
LJF99_13100	COG0752	glycyl-tRNA synthetase alpha subunit
LJF99_13105	COG0751	glycine-tRNA ligase activity
LJF99_13115	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LJF99_13125	COG2200	EAL domain
LJF99_13125	COG2199	diguanylate cyclase activity
LJF99_13125	COG2202	Pas domain
LJF99_13140	COG0814	amino acid
LJF99_13145	COG0348	domain, Protein
LJF99_13155	COG0446	pyridine nucleotide-disulphide oxidoreductase
LJF99_13160	COG0426	domain, Protein
LJF99_13160	COG1773	rubredoxin
LJF99_13165	COG3604	Transcriptional regulator
LJF99_13170	COG2188	Transcriptional regulator
LJF99_13185	COG1609	Transcriptional regulator
LJF99_13225	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJF99_13250	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
LJF99_13265	COG3118	belongs to the thioredoxin family
LJF99_13270	COG0513	Belongs to the DEAD box helicase family
LJF99_13275	COG0248	Ppx GppA phosphatase
LJF99_13285	COG0742	ribosomal rna small subunit methyltransferase
LJF99_13290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_13310	COG0084	hydrolase, TatD family'
LJF99_13315	COG0805	protein transport
LJF99_13320	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LJF99_13330	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LJF99_13335	COG3165	ubiquinone biosynthetic process from chorismate
LJF99_13345	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LJF99_13390	COG0810	Interacts with outer membrane receptor proteins that carry out high-affinity binding and energy dependent uptake into the periplasmic space of specific substrates. It could act to transduce energy from the cytoplasmic membrane to specific energy- requiring processes in the outer membrane, resulting in the release into the periplasm of ligands bound by these outer membrane proteins
LJF99_13395	COG0848	biopolymer transport protein
LJF99_13400	COG0811	peptide transport
LJF99_13405	COG0811	peptide transport
LJF99_13415	COG2771	luxR family
LJF99_13430	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
LJF99_13445	COG1484	DNA-dependent DNA replication
LJF99_13450	COG4584	PFAM Integrase catalytic
LJF99_13455	COG0732	type I restriction modification DNA specificity domain
LJF99_13510	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LJF99_13515	COG1349	DNA-binding transcription factor activity
LJF99_13520	COG0745	RESPONSE REGULATOR receiver
LJF99_13525	COG2205	protein histidine kinase activity
LJF99_13535	COG4452	Inner membrane protein CreD
LJF99_13540	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LJF99_13545	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LJF99_13550	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LJF99_13555	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LJF99_13560	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
LJF99_13565	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LJF99_13570	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LJF99_13580	COG0356	it plays a direct role in the translocation of protons across the membrane
LJF99_13585	COG3312	ion transport
LJF99_13590	COG1475	DNA binding
LJF99_13595	COG1192	Involved in chromosome partitioning
LJF99_13600	COG0357	Ribosomal RNA small subunit methyltransferase G
LJF99_13605	COG0445	tRNA wobble uridine modification
LJF99_13610	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LJF99_13615	COG4774	siderophore transport
LJF99_13620	COG4615	Cyclic peptide transporter
LJF99_13625	COG1120	ATPase activity
LJF99_13630	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LJF99_13640	COG4774	siderophore transport
LJF99_13645	COG4607	ABC-type enterochelin transport system periplasmic component
LJF99_13650	COG4604	ABC transporter, ATP-binding protein
LJF99_13655	COG4605	iron ion homeostasis
LJF99_13660	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LJF99_13665	COG1132	(ABC) transporter
LJF99_13670	COG1132	(ABC) transporter
LJF99_13670	COG2375	cellular response to nickel ion
LJF99_13680	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LJF99_13690	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LJF99_13705	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LJF99_13710	COG0706	membrane insertase activity
LJF99_13715	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LJF99_13720	COG0594	ribonuclease P activity
LJF99_13725	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LJF99_13730	COG1126	abc transporter atp-binding protein
LJF99_13745	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
LJF99_13750	COG0592	DNA-directed DNA polymerase activity
LJF99_13775	COG2378	regulation of single-species biofilm formation
LJF99_13780	COG0071	Belongs to the small heat shock protein (HSP20) family
LJF99_13785	COG0071	Belongs to the small heat shock protein (HSP20) family
LJF99_13805	COG3977	Valine--pyruvate aminotransferase
LJF99_13830	COG0745	RESPONSE REGULATOR receiver
LJF99_13835	COG2205	protein histidine kinase activity
LJF99_13855	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LJF99_13860	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_13860	COG4191	Histidine kinase
LJF99_13865	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJF99_13870	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_13875	COG1309	transcriptional regulator
LJF99_13905	COG0561	phosphatase activity
LJF99_13910	COG2267	carboxylic ester hydrolase activity
LJF99_13915	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LJF99_13920	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LJF99_13925	COG1758	RNA polymerase activity
LJF99_13930	COG0194	GDP metabolic process
LJF99_13935	COG0859	PFAM glycosyl transferase family 9
LJF99_13940	COG3642	lipopolysaccharide core region biosynthetic process
LJF99_13980	COG0589	response to stress
LJF99_13985	COG3007	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LJF99_13990	COG3706	GGDEF domain
LJF99_14000	COG1528	Iron-storage protein
LJF99_14005	COG2081	HI0933 family
LJF99_14035	COG3188	usher protein
LJF99_14055	COG4584	PFAM Integrase catalytic
LJF99_14060	COG1484	DNA-dependent DNA replication
LJF99_14075	COG2197	response regulator
LJF99_14080	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_14080	COG2205	protein histidine kinase activity
LJF99_14090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_14090	COG2205	protein histidine kinase activity
LJF99_14100	COG3275	phosphorelay sensor kinase activity
LJF99_14105	COG3279	Response regulator of the LytR AlgR family
LJF99_14110	COG2223	nitrite transmembrane transporter activity
LJF99_14115	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LJF99_14120	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LJF99_14135	COG0583	DNA-binding transcription factor activity
LJF99_14140	COG4206	TonB-dependent receptor
LJF99_14145	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LJF99_14190	COG0583	DNA-binding transcription factor activity
LJF99_14195	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LJF99_14200	COG0166	Belongs to the GPI family
LJF99_14210	COG0668	transmembrane transport
LJF99_14215	COG1309	transcriptional regulator
LJF99_14220	COG0756	dUTP diphosphatase activity
LJF99_14225	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LJF99_14230	COG2003	Belongs to the UPF0758 family
LJF99_14235	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LJF99_14240	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LJF99_14250	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LJF99_14255	COG2990	Protein conserved in bacteria
LJF99_14260	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LJF99_14265	COG0859	PFAM glycosyl transferase family 9
LJF99_14270	COG0463	Glycosyl transferase, family 2
LJF99_14275	COG0859	PFAM glycosyl transferase family 9
LJF99_14280	COG1519	Transferase
LJF99_14295	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_14300	COG1609	Transcriptional regulator
LJF99_14320	COG1580	Controls the rotational direction of flagella during chemotaxis
LJF99_14325	COG3161	chorismate lyase activity
LJF99_14330	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
LJF99_14335	COG2937	Belongs to the GPAT DAPAT family
LJF99_14340	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LJF99_14360	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LJF99_14365	COG2205	protein histidine kinase activity
LJF99_14370	COG0745	RESPONSE REGULATOR receiver
LJF99_14380	COG1045	serine acetyltransferase
LJF99_14390	COG3074	FtsZ-dependent cytokinesis
LJF99_14395	COG3155	Displays glyoxalase activity, catalyzing the conversion of glyoxal to glycolate
LJF99_14405	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LJF99_14455	COG0385	Bile acid
LJF99_14460	COG1262	PFAM Formylglycine-generating sulfatase enzyme
LJF99_14480	COG0583	DNA-binding transcription factor activity
LJF99_14485	COG1079	Belongs to the binding-protein-dependent transport system permease family
LJF99_14490	COG4603	Belongs to the binding-protein-dependent transport system permease family
LJF99_14495	COG3845	ABC transporter
LJF99_14505	COG1744	ABC transporter substrate-binding protein PnrA-like
LJF99_14510	COG0210	DNA helicase
LJF99_14550	COG2823	Periplasmic or secreted lipoprotein
LJF99_14570	COG0583	DNA-binding transcription factor activity
LJF99_14575	COG1280	lysine exporter protein (LysE YggA)
LJF99_14580	COG2391	methyltransferase activity
LJF99_14590	COG1280	lysine exporter protein (LysE YggA)
LJF99_14600	COG2962	Rard protein
LJF99_14610	COG1012	belongs to the aldehyde dehydrogenase family
LJF99_14620	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LJF99_14630	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LJF99_14630	COG0519	Catalyzes the synthesis of GMP from XMP
LJF99_14635	COG0686	Belongs to the AlaDH PNT family
LJF99_14640	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJF99_14665	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LJF99_14670	COG0569	domain protein
LJF99_14675	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LJF99_14675	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LJF99_14680	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LJF99_14685	COG0242	peptide deformylase activity
LJF99_14690	COG1652	LysM domain
LJF99_14695	COG0758	DNA mediated transformation
LJF99_14700	COG2922	Belongs to the Smg family
LJF99_14705	COG0551	DNA topoisomerase type I activity
LJF99_14715	COG0009	L-threonylcarbamoyladenylate synthase
LJF99_14720	COG0408	coproporphyrinogen oxidase activity
LJF99_14725	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
LJF99_14735	COG0218	Necessary for normal cell division and for the maintenance of normal septation
LJF99_14745	COG3078	GTPase activator activity
LJF99_14755	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LJF99_14760	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
LJF99_14765	COG2204	response regulator
LJF99_14770	COG3852	Histidine kinase
LJF99_14780	COG0174	glutamine synthetase
LJF99_14785	COG1217	gtp-binding protein TYPA
LJF99_14790	COG1295	ribonuclease BN
LJF99_14805	COG0456	acetyltransferase
LJF99_14815	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LJF99_14820	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LJF99_14825	COG2610	gluconate transmembrane transporter activity
LJF99_14830	COG3265	gluconokinase activity
LJF99_14835	COG0129	dihydroxy-acid dehydratase activity
LJF99_14840	COG0800	Aldolase
LJF99_14845	COG1609	Transcriptional regulator
LJF99_14855	COG4942	peptidase
LJF99_14860	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LJF99_14865	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LJF99_14870	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
LJF99_14875	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LJF99_14880	COG0316	Belongs to the HesB IscA family
LJF99_14880	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LJF99_14885	COG1040	competence protein
LJF99_14890	COG0596	Alpha beta hydrolase
LJF99_14910	COG2183	response to ionizing radiation
LJF99_14915	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJF99_14935	COG0051	transcription antitermination factor activity, RNA binding
LJF99_14940	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LJF99_14945	COG0088	Forms part of the polypeptide exit tunnel
LJF99_14950	COG0089	rRNA binding
LJF99_14955	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LJF99_14960	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LJF99_14965	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
LJF99_14970	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LJF99_14975	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LJF99_14980	COG0255	Belongs to the universal ribosomal protein uL29 family
LJF99_14985	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
LJF99_14990	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LJF99_14995	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LJF99_15000	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LJF99_15005	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LJF99_15010	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
LJF99_15015	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LJF99_15020	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LJF99_15025	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LJF99_15030	COG1841	ribosomal large subunit assembly
LJF99_15035	COG0200	Binds to the 23S rRNA
LJF99_15040	COG0201	protein transport
LJF99_15045	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LJF99_15050	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LJF99_15055	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LJF99_15060	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LJF99_15065	COG0202	RNA polymerase activity
LJF99_15070	COG0203	ribosomal protein L17
LJF99_15120	COG1484	DNA-dependent DNA replication
LJF99_15125	COG4584	PFAM Integrase catalytic
LJF99_15135	COG2376	Dihydroxyacetone kinase
LJF99_15140	COG1461	Dihydroxyacetone kinase
LJF99_15145	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LJF99_15145	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_15145	COG3412	dihydroxyacetone kinase, phosphotransfer subunit
LJF99_15155	COG3284	Transcriptional regulator
LJF99_15160	COG0628	permease
LJF99_15165	COG0494	nUDIX hydrolase
LJF99_15190	COG0753	catalase activity
LJF99_15215	COG2199	diguanylate cyclase activity
LJF99_15215	COG2203	Gaf domain
LJF99_15225	COG3842	ATPase activity
LJF99_15235	COG1176	ABC-type spermidine putrescine transport system, permease component I
LJF99_15270	COG1741	Belongs to the pirin family
LJF99_15275	COG2259	Doxx family
LJF99_15280	COG1330	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit recognizes the wild- type Chi sequence, and when added to isolated RecB increases its ATP-dependent helicase processivity
LJF99_15285	COG1074	ATP-dependent DNA helicase activity
LJF99_15290	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LJF99_15300	COG0346	lactoylglutathione lyase activity
LJF99_15315	COG0004	ammonium transporteR
LJF99_15320	COG0347	Belongs to the P(II) protein family
LJF99_15335	COG0840	transmembrane signaling receptor activity
LJF99_15365	COG3706	GGDEF domain
LJF99_15375	COG1278	Cold shock
LJF99_15380	COG2199	diguanylate cyclase activity
LJF99_15385	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LJF99_15390	COG2197	response regulator
LJF99_15405	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LJF99_15440	COG2249	NAD(P)H dehydrogenase (quinone) activity
LJF99_15455	COG1770	oligopeptidase
LJF99_15475	COG3714	YhhN family
LJF99_15500	COG1301	dicarboxylic acid transport
LJF99_15510	COG2095	MarC family integral membrane protein
LJF99_15520	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LJF99_15530	COG4623	carbon-oxygen lyase activity, acting on polysaccharides
LJF99_15540	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LJF99_15565	COG0742	ribosomal rna small subunit methyltransferase
LJF99_15570	COG0552	protein localization to endoplasmic reticulum
LJF99_15575	COG2884	Cell division ATP-binding protein ftsE
LJF99_15580	COG2177	Part of the ABC transporter FtsEX involved in
LJF99_15590	COG0288	reversible hydration of carbon dioxide
LJF99_15595	COG2188	Transcriptional regulator
LJF99_15600	COG1228	amidohydrolase
LJF99_15605	COG0010	Belongs to the arginase family
LJF99_15610	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LJF99_15615	COG2986	histidine ammonia-lyase
LJF99_15620	COG0387	Pfam Sodium calcium exchanger
LJF99_15625	COG2264	protein methyltransferase activity
LJF99_15630	COG2199	diguanylate cyclase activity
LJF99_15630	COG2200	EAL domain
LJF99_15690	COG1077	Cell shape determining protein MreB Mrl
LJF99_15695	COG1792	Involved in formation and maintenance of cell shape
LJF99_15700	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
LJF99_15705	COG0424	maF-like protein
LJF99_15710	COG1530	ribonuclease E activity
LJF99_15715	COG3164	Protein of unknown function
LJF99_15725	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LJF99_15730	COG0312	modulator of DNA gyrase
LJF99_15755	COG3437	response regulator, receiver
LJF99_15760	COG2205	protein histidine kinase activity
LJF99_15760	COG0784	Response regulator, receiver
LJF99_15760	COG5002	protein histidine kinase activity
LJF99_15765	COG2172	sigma factor antagonist activity
LJF99_15770	COG1366	Belongs to the anti-sigma-factor antagonist family
LJF99_15780	COG3700	Belongs to the class B bacterial acid phosphatase family
LJF99_15790	COG1639	'signal transduction protein
LJF99_15815	COG0189	ligase activity
LJF99_15820	COG0642	Histidine kinase
LJF99_15825	COG0745	RESPONSE REGULATOR receiver
LJF99_15845	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LJF99_15850	COG0352	thiamine-phosphate diphosphorylase activity
LJF99_15855	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LJF99_15865	COG2022	thiamine diphosphate biosynthetic process
LJF99_15895	COG0110	maltose O-acetyltransferase activity
LJF99_15900	COG3417	Regulator of peptidoglycan synthesis that is essential for the function of penicillin-binding protein 1B (PBP1b)
LJF99_15915	COG0814	amino acid
LJF99_15920	COG3932	Exopolysaccharide synthesis, ExoD
LJF99_15935	COG1733	regulation of RNA biosynthetic process
LJF99_15975	COG1494	fructose-1,6-bisphosphatase
LJF99_15990	COG2959	enzyme of heme biosynthesis
LJF99_16000	COG0181	hydroxymethylbilane synthase activity
LJF99_16005	COG3072	Adenylate cyclase
LJF99_16025	COG1965	Belongs to the frataxin family
LJF99_16035	COG0019	diaminopimelate decarboxylase activity
LJF99_16040	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LJF99_16055	COG1011	Hydrolase
LJF99_16065	COG0668	transmembrane transport
LJF99_16075	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LJF99_16080	COG0561	phosphatase activity
LJF99_16095	COG0842	Transport permease protein
LJF99_16095	COG1129	ABC transporter
LJF99_16105	COG1058	Belongs to the CinA family
LJF99_16105	COG1546	Belongs to the CinA family
LJF99_16110	COG1418	mRNA catabolic process
LJF99_16115	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
LJF99_16125	COG1522	sequence-specific DNA binding
LJF99_16130	COG1368	sulfuric ester hydrolase activity
LJF99_16150	COG1285	pathogenesis
LJF99_16170	COG4221	oxidoreductase activity
LJF99_16190	COG1979	alcohol dehydrogenase
LJF99_16200	COG2873	o-acetylhomoserine
LJF99_16210	COG4533	DNA binding
LJF99_16215	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
LJF99_16230	COG5380	lipid catabolic process
LJF99_16235	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
LJF99_16245	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LJF99_16250	COG2949	membrane
LJF99_16255	COG3291	Pkd domain containing protein
LJF99_16265	COG3539	Fimbrial protein
LJF99_16275	COG3188	usher protein
LJF99_16280	COG3121	Chaperone
LJF99_16285	COG3539	Fimbrial protein
LJF99_16305	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_16315	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LJF99_16320	COG0596	Alpha beta hydrolase
LJF99_16325	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LJF99_16330	COG1169	isochorismate synthase
LJF99_16335	COG1575	Belongs to the MenA family. Type 1 subfamily
LJF99_16365	COG0513	Belongs to the DEAD box helicase family
LJF99_16370	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJF99_16375	COG1988	membrane-bound metal-dependent
LJF99_16390	COG1671	Belongs to the UPF0178 family
LJF99_16410	COG0484	heat shock protein binding
LJF99_16415	COG3263	regulation of cellular component size
LJF99_16420	COG3722	fumarate hydratase activity
LJF99_16425	COG0246	Mannitol dehydrogenase
LJF99_16430	COG2213	PTS system mannitol-specific
LJF99_16430	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_16445	COG4776	Involved in mRNA degradation. Hydrolyzes single-stranded polyribonucleotides processively in the 3' to 5' direction
LJF99_16460	COG2771	luxR family
LJF99_16475	COG3133	Outer membrane lipoprotein
LJF99_16480	COG0456	acetyltransferase
LJF99_16500	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
LJF99_16505	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LJF99_16525	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJF99_16530	COG1459	type II secretion system
LJF99_16535	COG2165	general secretion pathway protein
LJF99_16545	COG2165	general secretion pathway protein
LJF99_16550	COG4795	General secretion pathway protein
LJF99_16555	COG3156	type II secretion system protein K
LJF99_16565	COG3149	Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins
LJF99_16580	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LJF99_16585	COG1011	Hydrolase
LJF99_16590	COG0494	nUDIX hydrolase
LJF99_16595	COG1218	3'(2'),5'-bisphosphate nucleotidase
LJF99_16600	COG0814	amino acid
LJF99_16605	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LJF99_16620	COG0626	cystathionine gamma-synthase activity
LJF99_16625	COG0460	homoserine dehydrogenase
LJF99_16625	COG0527	aspartate kinase activity
LJF99_16640	COG1346	cytolysis
LJF99_16645	COG1380	Effector of murein hydrolase LrgA
LJF99_16680	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LJF99_16685	COG1546	Belongs to the CinA family
LJF99_16690	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LJF99_16700	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LJF99_16705	COG0527	aspartate kinase activity
LJF99_16710	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LJF99_16735	COG1686	Belongs to the peptidase S11 family
LJF99_16740	COG0586	Pfam SNARE associated Golgi protein
LJF99_16745	COG1253	flavin adenine dinucleotide binding
LJF99_16755	COG2927	DNA polymerase III (CHI subunit)
LJF99_16760	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LJF99_16765	COG0795	lipopolysaccharide-transporting ATPase activity
LJF99_16770	COG0795	lipopolysaccharide-transporting ATPase activity
LJF99_16915	COG4695	Portal protein
LJF99_17000	COG2932	Transcriptional regulator
LJF99_17005	COG4974	Belongs to the 'phage' integrase family
LJF99_17010	COG0582	viral genome integration into host DNA
LJF99_17020	COG0494	nUDIX hydrolase
LJF99_17025	COG3151	Protein conserved in bacteria
LJF99_17035	COG3150	esterase
LJF99_17040	COG1051	belongs to the nudix hydrolase family
LJF99_17095	COG2259	Doxx family
LJF99_17100	COG3118	belongs to the thioredoxin family
LJF99_17120	COG0204	Acyl-transferase
LJF99_17125	COG1842	Phage shock protein A
LJF99_17140	COG2827	Endonuclease containing a URI domain
LJF99_17150	COG2962	Rard protein
LJF99_17155	COG1573	uracil-dna glycosylase
LJF99_17165	COG0583	DNA-binding transcription factor activity
LJF99_17170	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LJF99_17175	COG1121	(ABC) transporter
LJF99_17180	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
LJF99_17200	COG0739	heme binding
LJF99_17210	COG3068	Protein conserved in bacteria
LJF99_17230	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LJF99_17250	COG0798	PFAM Bile acid sodium symporter
LJF99_17255	COG1393	Belongs to the ArsC family
LJF99_17260	COG2072	flavoprotein involved in K transport
LJF99_17270	COG2352	Forms oxaloacetate, a four-carbon dicarboxylic acid source for the tricarboxylic acid cycle
LJF99_17280	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LJF99_17285	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LJF99_17295	COG0137	argininosuccinate synthase activity
LJF99_17300	COG0165	Argininosuccinate lyase
LJF99_17305	COG0583	DNA-binding transcription factor activity
LJF99_17315	COG1942	4-Oxalocrotonate Tautomerase
LJF99_17345	COG0110	maltose O-acetyltransferase activity
LJF99_17350	COG3174	membrane
LJF99_17355	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
LJF99_17365	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
LJF99_17370	COG4208	sulfate ABC transporter
LJF99_17375	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
LJF99_17380	COG0583	DNA-binding transcription factor activity
LJF99_17385	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LJF99_17390	COG0765	amino acid transport
LJF99_17400	COG1126	abc transporter atp-binding protein
LJF99_17405	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_17410	COG3397	chitin binding
LJF99_17415	COG0840	transmembrane signaling receptor activity
LJF99_17460	COG1215	transferase activity, transferring glycosyl groups
LJF99_17495	COG1328	CTP reductase activity
LJF99_17515	COG1448	Aminotransferase
LJF99_17555	COG0513	Belongs to the DEAD box helicase family
LJF99_17570	COG3568	Endonuclease Exonuclease Phosphatase
LJF99_17575	COG0840	transmembrane signaling receptor activity
LJF99_17590	COG3112	Uncharacterised protein family (UPF0231)
LJF99_17595	COG3835	regulator
LJF99_17600	COG2610	gluconate transmembrane transporter activity
LJF99_17600	COG2610	gluconate transmembrane transporter activity
LJF99_17605	COG1929	Belongs to the glycerate kinase type-1 family
LJF99_17625	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LJF99_17640	COG0347	Belongs to the P(II) protein family
LJF99_17645	COG1840	ABC-type Fe3 transport system, periplasmic component
LJF99_17655	COG3842	ATPase activity
LJF99_17660	COG2837	iron assimilation
LJF99_17665	COG1438	arginine binding
LJF99_17670	COG1126	abc transporter atp-binding protein
LJF99_17675	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_17680	COG4215	(ABC) transporter
LJF99_17685	COG4160	amino acid transport
LJF99_17690	COG0039	L-malate dehydrogenase activity
LJF99_17695	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
LJF99_17700	COG1017	nitric oxide dioxygenase activity
LJF99_17700	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
LJF99_17705	COG1959	2 iron, 2 sulfur cluster binding
LJF99_17710	COG4536	flavin adenine dinucleotide binding
LJF99_17715	COG4137	Cytochrome C assembly protein
LJF99_17720	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LJF99_17725	COG0228	four-way junction DNA binding
LJF99_17730	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LJF99_17735	COG0336	Belongs to the RNA methyltransferase TrmD family
LJF99_17740	COG0335	large ribosomal subunit rRNA binding
LJF99_17750	COG3066	DNA modification
LJF99_17755	COG1051	belongs to the nudix hydrolase family
LJF99_17765	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LJF99_17770	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
LJF99_17775	COG3004	Na( ) H( ) antiporter that extrudes sodium in exchange for external protons
LJF99_17785	COG0583	DNA-binding transcription factor activity
LJF99_17790	COG0640	Transcriptional regulator
LJF99_17795	COG0268	Binds directly to 16S ribosomal RNA
LJF99_17800	COG0728	peptidoglycan biosynthetic process
LJF99_17805	COG0196	riboflavin kinase activity
LJF99_17810	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LJF99_17815	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LJF99_17820	COG1047	Peptidyl-prolyl cis-trans
LJF99_17825	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LJF99_17865	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
LJF99_17865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LJF99_17880	COG1854	S-ribosylhomocysteine lyase activity
LJF99_17885	COG3706	GGDEF domain
LJF99_17890	COG0557	exoribonuclease II activity
LJF99_17895	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LJF99_17905	COG2153	protein acetylation
LJF99_17925	COG1914	H( )-stimulated, divalent metal cation uptake system
LJF99_17930	COG0360	Binds together with S18 to 16S ribosomal RNA
LJF99_17935	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LJF99_17940	COG0359	binds to the 23S rRNA
LJF99_17970	COG1064	alcohol dehydrogenase
LJF99_17975	COG1238	metal cluster binding
LJF99_17980	COG0612	Peptidase, M16
LJF99_17985	COG2918	glutathione biosynthetic process
LJF99_17995	COG1022	Amp-dependent synthetase and ligase
LJF99_18005	COG0456	acetyltransferase
LJF99_18015	COG0714	Associated with various cellular activities
LJF99_18045	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LJF99_18055	COG1902	pentaerythritol trinitrate reductase activity
LJF99_18065	COG0442	prolyl-tRNA aminoacylation
LJF99_18070	COG0840	transmembrane signaling receptor activity
LJF99_18075	COG0632	four-way junction helicase activity
LJF99_18080	COG2255	four-way junction helicase activity
LJF99_18085	COG1271	oxidase subunit
LJF99_18090	COG1294	oxidase, subunit
LJF99_18095	COG4890	Cyd operon protein YbgT
LJF99_18100	COG3790	cyd operon protein YbgE
LJF99_18105	COG0824	Thioesterase
LJF99_18110	COG0811	peptide transport
LJF99_18125	COG0823	Involved in the tonB-independent uptake of proteins
LJF99_18130	COG2885	chlorophyll binding
LJF99_18135	COG1729	Mediates coordination of peptidoglycan synthesis and outer membrane constriction during cell division
LJF99_18215	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LJF99_18220	COG0676	glucose-6-phosphate 1-epimerase activity
LJF99_18225	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LJF99_18230	COG1640	4-alpha-glucanotransferase
LJF99_18235	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
LJF99_18255	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LJF99_18260	COG4991	sh3 domain protein
LJF99_18265	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LJF99_18265	COG4230	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
LJF99_18265	COG0506	proline dehydrogenase activity
LJF99_18275	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LJF99_18280	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
LJF99_18285	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LJF99_18290	COG0163	prenyltransferase activity
LJF99_18305	COG1131	(ABC) transporter
LJF99_18310	COG0842	Transport permease protein
LJF99_18320	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LJF99_18325	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LJF99_18330	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LJF99_18335	COG0617	tRNA 3'-terminal CCA addition
LJF99_18340	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LJF99_18345	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LJF99_18350	COG1489	DNA binding
LJF99_18360	COG1643	Atp-dependent helicase
LJF99_18365	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LJF99_18370	COG0346	lactoylglutathione lyase activity
LJF99_18380	COG2076	Multidrug Resistance protein
LJF99_18385	COG0583	DNA-binding transcription factor activity
LJF99_18390	COG0784	Response regulator, receiver
LJF99_18390	COG3437	response regulator, receiver
LJF99_18400	COG0671	phosphoesterase, PA-phosphatase related
LJF99_18415	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LJF99_18420	COG0038	chloride channel
LJF99_18430	COG0316	Belongs to the HesB IscA family
LJF99_18460	COG1280	lysine exporter protein (LysE YggA)
LJF99_18465	COG2901	Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters
LJF99_18480	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_18510	COG0745	RESPONSE REGULATOR receiver
LJF99_18515	COG3104	oligopeptide transport
LJF99_18520	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LJF99_18525	COG1555	photosystem II stabilization
LJF99_18535	COG2350	Protein conserved in bacteria
LJF99_18540	COG2917	probably involved in intracellular septation
LJF99_18545	COG0076	glutamate decarboxylase activity
LJF99_18550	COG1272	protein, Hemolysin III
LJF99_18555	COG2985	domain, Protein
LJF99_18555	COG0569	domain protein
LJF99_18570	COG0784	Response regulator, receiver
LJF99_18570	COG0835	chemotaxis
LJF99_18575	COG2755	lipolytic protein G-D-S-L family
LJF99_18580	COG4181	ATPase activity
LJF99_18585	COG3127	ABC-type transport system involved in lysophospholipase L1, biosynthesis, permease component
LJF99_18590	COG1090	epimerase
LJF99_18595	COG2200	EAL domain
LJF99_18610	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LJF99_18615	COG3171	Protein conserved in bacteria
LJF99_18620	COG2066	Belongs to the glutaminase family
LJF99_18625	COG2897	thiosulfate sulfurtransferase activity
LJF99_18635	COG1132	(ABC) transporter
LJF99_18645	COG1012	belongs to the aldehyde dehydrogenase family
LJF99_18650	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
LJF99_18685	COG3076	Globally modulates RNA abundance by binding to RNase E (Rne) and regulating its endonucleolytic activity. Can modulate Rne action in a substrate-dependent manner by altering the composition of the degradosome
LJF99_18690	COG5001	Diguanylate cyclase
LJF99_18690	COG3300	MHYT domain
LJF99_18710	COG4628	conserved protein (DUF2132)
LJF99_18715	COG0688	phosphatidylethanolamine metabolic process
LJF99_18725	COG1949	3'-to-5' exoribonuclease specific for small oligoribonucleotides
LJF99_18755	COG1278	Cold shock
LJF99_18765	COG0840	transmembrane signaling receptor activity
LJF99_18770	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LJF99_18815	COG0848	biopolymer transport protein
LJF99_18820	COG0811	peptide transport
LJF99_18825	COG0811	peptide transport
LJF99_18835	COG4206	TonB-dependent receptor
LJF99_18840	COG0601	transmembrane transport
LJF99_18845	COG4174	ABC transporter (Permease)
LJF99_18850	COG4239	(ABC) transporter, permease
LJF99_18855	COG0747	negative chemotaxis
LJF99_18860	COG0444	Belongs to the ABC transporter superfamily
LJF99_18865	COG4608	Belongs to the ABC transporter superfamily
LJF99_18870	COG2195	Cleaves the N-terminal amino acid of tripeptides
LJF99_18880	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
LJF99_18885	COG1073	alpha beta
LJF99_18895	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LJF99_18900	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LJF99_18930	COG1522	sequence-specific DNA binding
LJF99_18930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LJF99_18935	COG2313	pseudouridylate synthase activity
LJF99_18945	COG1858	cytochrome C peroxidase
LJF99_18980	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LJF99_18985	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LJF99_18995	COG0318	PFAM AMP-dependent synthetase and ligase
LJF99_19010	COG2986	histidine ammonia-lyase
LJF99_19035	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJF99_19045	COG1028	Short-chain dehydrogenase reductase Sdr
LJF99_19050	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LJF99_19060	COG0521	Mo-molybdopterin cofactor biosynthetic process
LJF99_19070	COG2966	Psort location CytoplasmicMembrane, score
LJF99_19075	COG3610	response to peptide
LJF99_19085	COG4175	Glycine betaine
LJF99_19090	COG4176	ABC-type proline glycine betaine transport system permease component
LJF99_19095	COG2113	Glycine betaine
LJF99_19100	COG0175	sulfate reduction
LJF99_19115	COG0384	phenazine biosynthesis protein PhzF
LJF99_19120	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LJF99_19135	COG0786	glutamate:sodium symporter activity
LJF99_19140	COG0252	asparaginase activity
LJF99_19145	COG3139	Protein of unknown function (DUF1315)
LJF99_19165	COG0616	signal peptide processing
LJF99_19170	COG0446	pyridine nucleotide-disulphide oxidoreductase
LJF99_19170	COG1902	pentaerythritol trinitrate reductase activity
LJF99_19175	COG0778	Nitroreductase
LJF99_19205	COG4302	ethanolamine ammonia-lyase activity
LJF99_19210	COG4303	Ethanolamine ammonia lyase large subunit
LJF99_19220	COG2264	protein methyltransferase activity
LJF99_19225	COG0604	alcohol dehydrogenase
LJF99_19230	COG0583	DNA-binding transcription factor activity
LJF99_19235	COG2190	(PTS) system
LJF99_19235	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LJF99_19235	COG1263	PTS System
LJF99_19240	COG4145	pantothenate transmembrane transporter activity
LJF99_19245	COG3924	membrane
LJF99_19250	COG0439	Biotin carboxylase
LJF99_19255	COG0511	ligase activity, forming carbon-carbon bonds
LJF99_19260	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LJF99_19265	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LJF99_19295	COG3381	protein complex oligomerization
LJF99_19310	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
LJF99_19325	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LJF99_19330	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJF99_19330	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LJF99_19345	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LJF99_19350	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LJF99_19355	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
LJF99_19360	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LJF99_19365	COG4172	Belongs to the ABC transporter superfamily
LJF99_19375	COG0601	transmembrane transport
LJF99_19385	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LJF99_19390	COG0142	geranyltranstransferase activity
LJF99_19395	COG1722	exodeoxyribonuclease VII activity
LJF99_19400	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJF99_19435	COG1534	Rna-binding protein
LJF99_19440	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
LJF99_19450	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LJF99_19455	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LJF99_19460	COG0149	triose-phosphate isomerase activity
LJF99_19465	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LJF99_19480	COG0779	Required for maturation of 30S ribosomal subunits
LJF99_19485	COG0195	Participates in both transcription termination and antitermination
LJF99_19490	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
LJF99_19495	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
LJF99_19500	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LJF99_19505	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LJF99_19510	COG1185	polyribonucleotide nucleotidyltransferase activity
LJF99_19520	COG3706	GGDEF domain
LJF99_19525	COG1553	Part of a sulfur-relay system required for 2-thiolation of 5-methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at tRNA wobble positions. Accepts sulfur from TusA and transfers it in turn to TusE
LJF99_19530	COG1422	Protein of unknown function (DUF1090)
LJF99_19585	COG0312	modulator of DNA gyrase
LJF99_19600	COG4974	Belongs to the 'phage' integrase family
LJF99_19610	COG1970	mechanosensitive ion channel activity
LJF99_19620	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LJF99_19635	COG3545	Serine hydrolase
LJF99_19640	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LJF99_19680	COG4584	PFAM Integrase catalytic
LJF99_19685	COG1484	DNA-dependent DNA replication
LJF99_19710	COG3621	Patatin-like phospholipase
LJF99_19725	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
LJF99_19730	COG0321	lipoyl(octanoyl) transferase activity
LJF99_19735	COG2921	Belongs to the UPF0250 family
LJF99_19740	COG1686	Belongs to the peptidase S11 family
LJF99_19745	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
LJF99_19755	COG0772	Belongs to the SEDS family
LJF99_19760	COG0768	penicillin binding
LJF99_19765	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LJF99_19770	COG0799	negative regulation of ribosome biogenesis
LJF99_19775	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LJF99_19795	COG0495	leucyl-tRNA aminoacylation
LJF99_19800	COG2888	peptidyl-tyrosine sulfation
LJF99_19805	COG0815	Transfers the fatty acyl group on membrane lipoproteins
LJF99_19810	COG4535	Mg2 and Co2 transporter CorC
LJF99_19815	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
LJF99_19820	COG1702	phosphate starvation-inducible protein PhoH
LJF99_19825	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LJF99_19830	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LJF99_19840	COG3706	GGDEF domain
LJF99_19855	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJF99_19875	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LJF99_19885	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LJF99_19895	COG0516	GMP reductase activity
LJF99_19905	COG0642	Histidine kinase
LJF99_19945	COG3214	Protein conserved in bacteria
LJF99_19965	COG3080	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LJF99_19970	COG3029	Seems to be involved in the anchoring of the catalytic components of the fumarate reductase complex to the cytoplasmic membrane
LJF99_19975	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LJF99_19980	COG1053	succinate dehydrogenase
LJF99_19990	COG0584	glycerophosphoryl diester phosphodiesterase
LJF99_19995	COG1511	domain protein
LJF99_19995	COG3264	Mechanosensitive ion channel
LJF99_20010	COG0739	heme binding
LJF99_20025	COG0583	DNA-binding transcription factor activity
LJF99_20050	COG0583	DNA-binding transcription factor activity
LJF99_20055	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LJF99_20085	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
LJF99_20090	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LJF99_20100	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LJF99_20105	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LJF99_20110	COG0546	phosphoglycolate phosphatase activity
LJF99_20115	COG0180	Tryptophanyl-tRNA synthetase
LJF99_20130	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LJF99_20140	COG1012	belongs to the aldehyde dehydrogenase family
LJF99_20150	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LJF99_20160	COG0674	pyruvate-flavodoxin oxidoreductase activity
LJF99_20160	COG1013	pyruvate-flavodoxin oxidoreductase activity
LJF99_20160	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LJF99_20160	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LJF99_20170	COG0488	(ABC) transporter
LJF99_20180	COG0366	Alpha amylase catalytic
LJF99_20190	COG0443	Heat shock 70 kDa protein
LJF99_20220	COG2820	Catalyzes the reversible phosphorylytic cleavage of uridine and deoxyuridine to uracil and ribose- or deoxyribose-1- phosphate. The produced molecules are then utilized as carbon and energy sources or in the rescue of pyrimidine bases for nucleotide synthesis
LJF99_20230	COG0471	metal ion transport
LJF99_20230	COG0490	domain, Protein
LJF99_20295	COG0012	GTP binding
LJF99_20300	COG0193	aminoacyl-tRNA hydrolase activity
LJF99_20305	COG0737	Belongs to the 5'-nucleotidase family
LJF99_20310	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
LJF99_20320	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
LJF99_20325	COG3017	Plays a critical role in the incorporation of lipoproteins in the outer membrane after they are released by the LolA protein
LJF99_20330	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
LJF99_20335	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LJF99_20340	COG2890	protein-(glutamine-N5) methyltransferase activity
LJF99_20360	COG1301	dicarboxylic acid transport
LJF99_20380	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LJF99_20395	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LJF99_20400	COG1115	amino acid carrier protein
LJF99_20415	COG0714	Associated with various cellular activities
LJF99_20435	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
LJF99_20440	COG1678	Uncharacterized ACR, COG1678
LJF99_20455	COG0189	ligase activity
LJF99_20460	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LJF99_20470	COG3091	SprT-like family
LJF99_20480	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
LJF99_20495	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LJF99_20500	COG0739	heme binding
LJF99_20505	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LJF99_20520	COG0463	Glycosyl transferase, family 2
LJF99_20535	COG2989	Protein conserved in bacteria
LJF99_20540	COG3108	Peptidase M15
LJF99_20550	COG2860	membrane
LJF99_20560	COG1196	nuclear chromosome segregation
LJF99_20565	COG3115	cell septum assembly
LJF99_20570	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LJF99_20580	COG1328	CTP reductase activity
LJF99_20590	COG0602	queuosine metabolic process
LJF99_20615	COG1566	PFAM secretion protein HlyD family protein
LJF99_20620	COG1846	Transcriptional regulator
LJF99_20635	COG0281	malic enzyme
LJF99_20640	COG3290	protein histidine kinase activity
LJF99_20670	COG3706	GGDEF domain
LJF99_20675	COG0346	lactoylglutathione lyase activity
LJF99_20680	COG0745	RESPONSE REGULATOR receiver
LJF99_20685	COG5002	protein histidine kinase activity
LJF99_20705	COG1940	carbohydrate kinase activity
LJF99_20710	COG3142	Participates in the control of copper homeostasis
LJF99_20715	COG0545	Peptidyl-prolyl cis-trans isomerase
LJF99_20720	COG1131	(ABC) transporter
LJF99_20760	COG0019	diaminopimelate decarboxylase activity
LJF99_20765	COG1115	amino acid carrier protein
LJF99_20770	COG0095	Lipoate-protein ligase
LJF99_20775	COG2233	PERMEase
LJF99_20790	COG0534	Mate efflux family protein
LJF99_20795	COG2207	Transcriptional regulator
LJF99_20800	COG0281	malic enzyme
LJF99_20830	COG0733	neurotransmitter:sodium symporter activity
LJF99_20835	COG1752	Esterase of the alpha-beta hydrolase superfamily
LJF99_20840	COG3706	GGDEF domain
LJF99_20845	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_20850	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJF99_20860	COG1032	radical SAM domain protein
LJF99_20890	COG0673	inositol 2-dehydrogenase activity
LJF99_20895	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
LJF99_20900	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LJF99_20905	COG1196	nuclear chromosome segregation
LJF99_20905	COG0741	lytic transglycosylase activity
LJF99_20905	COG0739	heme binding
LJF99_20910	COG0366	Alpha amylase catalytic
LJF99_20930	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LJF99_20940	COG0788	formyltetrahydrofolate deformylase activity
LJF99_20945	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LJF99_20955	COG3118	belongs to the thioredoxin family
LJF99_20960	COG2091	lysine biosynthetic process via aminoadipic acid
LJF99_20965	COG0791	NLP P60 protein
LJF99_20970	COG3129	Specifically methylates the adenine in position 1618 of 23S rRNA
LJF99_20985	COG1388	LysM domain
LJF99_20985	COG1376	ErfK ybiS ycfS ynhG family protein
LJF99_21020	COG4584	PFAM Integrase catalytic
LJF99_21025	COG1484	DNA-dependent DNA replication
LJF99_21035	COG3209	COG3209 Rhs family protein
LJF99_21070	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LJF99_21080	COG1960	acyl-CoA dehydrogenase activity
LJF99_21085	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJF99_21095	COG0469	pyruvate kinase activity
LJF99_21100	COG1737	Transcriptional regulator
LJF99_21125	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LJF99_21145	COG1342	Belongs to the UPF0251 family
LJF99_21160	COG1574	metal-dependent hydrolase with the TIM-barrel fold
LJF99_21170	COG1677	Flagellar hook-basal body complex protein FliE
LJF99_21180	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LJF99_21235	COG1684	flagellar biosynthetic protein fliR
LJF99_21245	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LJF99_21270	COG3143	Plays an important role in bacterial chemotaxis signal transduction pathway by accelerating the dephosphorylation of phosphorylated CheY (CheY-P)
LJF99_21275	COG0643	Histidine kinase
LJF99_21275	COG0784	Response regulator, receiver
LJF99_21275	COG2198	Histidine kinase
LJF99_21280	COG2201	protein-glutamate methylesterase activity
LJF99_21285	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LJF99_21290	COG1360	Flagellar Motor Protein
LJF99_21295	COG1192	Involved in chromosome partitioning
LJF99_21305	COG0835	chemotaxis
LJF99_21325	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJF99_21330	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJF99_21335	COG3114	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LJF99_21340	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
LJF99_21345	COG1138	Cytochrome C-type biogenesis protein
LJF99_21350	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LJF99_21355	COG3088	subunit of a heme lyase
LJF99_21355	COG4235	cytochrome complex assembly
LJF99_21375	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
LJF99_21380	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LJF99_21380	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LJF99_21395	COG0259	pyridoxamine-phosphate oxidase activity
LJF99_21415	COG3153	acetyltransferase
LJF99_21435	COG2850	peptidyl-arginine hydroxylation
LJF99_21440	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LJF99_21445	COG2915	High frequency lysogenization protein hflD homolog
LJF99_21450	COG0482	sulfurtransferase activity
LJF99_21470	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJF99_21480	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJF99_21480	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LJF99_21480	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LJF99_21510	COG0159	tryptophan synthase activity
LJF99_21515	COG0133	tryptophan synthase activity
LJF99_21520	COG0134	indole-3-glycerol-phosphate synthase activity
LJF99_21520	COG0135	phosphoribosylanthranilate isomerase activity
LJF99_21525	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LJF99_21530	COG0512	Glutamine amidotransferase of anthranilate synthase
LJF99_21530	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LJF99_21535	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LJF99_21545	COG0009	L-threonylcarbamoyladenylate synthase
LJF99_21555	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LJF99_21565	COG1946	Acyl-CoA thioesterase
LJF99_21585	COG1309	transcriptional regulator
LJF99_21590	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LJF99_21595	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LJF99_21615	COG1091	dTDP-4-dehydrorhamnose reductase activity
LJF99_21635	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LJF99_21640	COG1459	type II secretion system
LJF99_21685	COG1450	Type ii and iii secretion system protein
LJF99_21705	COG0438	transferase activity, transferring glycosyl groups
LJF99_21710	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LJF99_21730	COG3273	potassium ion transport
LJF99_21730	COG0471	metal ion transport
LJF99_21735	COG0471	metal ion transport
LJF99_21735	COG0490	domain, Protein
LJF99_21755	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LJF99_21790	COG0438	transferase activity, transferring glycosyl groups
LJF99_21805	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LJF99_21815	COG3132	Protein of unknown function, DUF480
LJF99_21830	COG4584	PFAM Integrase catalytic
LJF99_21835	COG1484	DNA-dependent DNA replication
LJF99_21875	COG1278	Cold shock
LJF99_21930	COG4166	transmembrane transport
LJF99_21935	COG0622	Phosphoesterase
LJF99_21955	COG0784	Response regulator, receiver
LJF99_21955	COG0835	chemotaxis
LJF99_21960	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LJF99_21965	COG1815	bacterial-type flagellum-dependent cell motility
LJF99_21985	COG4787	bacterial-type flagellum-dependent cell motility
LJF99_21995	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
LJF99_22000	COG1706	bacterial-type flagellum-dependent cell motility
LJF99_22020	COG2239	Acts as a magnesium transporter
LJF99_22025	COG0248	Ppx GppA phosphatase
LJF99_22030	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LJF99_22060	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LJF99_22065	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LJF99_22070	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LJF99_22075	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LJF99_22095	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LJF99_22105	COG0590	tRNA wobble adenosine to inosine editing
LJF99_22110	COG0573	inorganic phosphate transmembrane transporter activity
LJF99_22115	COG0581	inorganic phosphate transmembrane transporter activity
LJF99_22120	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LJF99_22125	COG0704	Plays a role in the regulation of phosphate uptake
LJF99_22130	COG1253	flavin adenine dinucleotide binding
LJF99_22145	COG0531	amino acid
LJF99_22155	COG1126	abc transporter atp-binding protein
LJF99_22160	COG0765	amino acid transport
LJF99_22165	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LJF99_22170	COG3706	GGDEF domain
LJF99_22175	COG2271	Major facilitator Superfamily
LJF99_22190	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LJF99_22210	COG1785	Belongs to the alkaline phosphatase family
LJF99_22215	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LJF99_22220	COG0123	including yeast histone deacetylase and acetoin utilization protein
LJF99_22230	COG1199	ATP-dependent helicase activity
LJF99_22245	COG1448	Aminotransferase
LJF99_22250	COG0433	COG0433 Predicted ATPase
LJF99_22265	COG2333	competence protein COMEC
LJF99_22265	COG0658	competence protein
LJF99_22270	COG1132	(ABC) transporter
LJF99_22275	COG1663	tetraacyldisaccharide 4'-kinase activity
LJF99_22280	COG2835	tetraacyldisaccharide 4'-kinase activity
LJF99_22285	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LJF99_22290	COG2197	response regulator
LJF99_22295	COG0322	excinuclease ABC activity
LJF99_22320	COG4737	Cytotoxic translational repressor of toxin-antitoxin stability system
LJF99_22465	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_22490	COG4584	PFAM Integrase catalytic
LJF99_22495	COG1484	DNA-dependent DNA replication
LJF99_22515	COG0393	Putative heavy-metal-binding
LJF99_22545	COG3328	transposase activity
LJF99_22555	COG1192	Involved in chromosome partitioning
LJF99_22565	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_22595	COG1192	Involved in chromosome partitioning
LJF99_22600	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LJF99_22610	COG2194	sulfuric ester hydrolase activity
LJF99_22615	COG2194	sulfuric ester hydrolase activity
LJF99_22640	COG1484	DNA-dependent DNA replication
LJF99_22645	COG4584	PFAM Integrase catalytic
LJF99_22685	COG2003	Belongs to the UPF0758 family
LJF99_22745	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LJF99_22935	COG4584	PFAM Integrase catalytic
LJF99_22940	COG1484	DNA-dependent DNA replication
LJF99_22945	COG3328	transposase activity
LJF99_22980	COG4792	protein secretion
LJF99_22985	COG4791	protein targeting
LJF99_22990	COG4794	Type iii secretion
LJF99_22995	COG4790	Type iii secretion
LJF99_23065	COG0457	Tetratricopeptide repeat
LJF99_23155	COG1317	bacterial-type flagellum organization
LJF99_23185	COG3328	transposase activity
LJF99_23315	COG1192	Involved in chromosome partitioning
LJF99_23330	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_23375	COG1629	transport
LJF99_23375	COG4771	TonB-dependent receptor
LJF99_23390	COG2916	Histone family protein nucleoid-structuring protein H-NS
LJF99_23435	COG2826	transposase and inactivated derivatives, IS30 family
LJF99_23445	COG0489	protein tyrosine kinase activity
LJF99_23495	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LJF99_23540	COG2003	Belongs to the UPF0758 family
LJF99_23725	COG3093	addiction module antidote protein HigA
LJF99_23820	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
LJF99_23835	COG3736	Type IV secretory pathway, component VirB8
LJF99_23860	COG3451	type IV secretory pathway VirB4
LJF99_23880	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJF99_23890	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LJF99_23920	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LJF99_24010	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LJF99_24135	COG3077	Addiction module antitoxin, RelB DinJ family
LJF99_24140	COG2026	Addiction module toxin, RelE StbE family
LJF99_24250	COG3328	transposase activity