locus-tag class description GO992_00015 PF04341 Protein of unknown function, DUF485 GO992_00040 PF00378 Enoyl-CoA hydratase/isomerase GO992_00040 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GO992_00040 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GO992_00045 PF01235 Sodium:alanine symporter family GO992_00050 PF00583 Acetyltransferase (GNAT) family GO992_00060 PF01184 GPR1/FUN34/yaaH family GO992_00080 PF13808 DDE_Tnp_1-associated GO992_00080 PF01609 Transposase DDE domain GO992_00100 PF03553 Na+/H+ antiporter family GO992_00105 PF00265 Thymidine kinase GO992_00115 PF10722 Putative bacterial sensory transduction regulator GO992_00125 PF00842 Alanine racemase, C-terminal domain GO992_00125 PF01168 Alanine racemase, N-terminal domain GO992_00130 PF01609 Transposase DDE domain GO992_00130 PF13808 DDE_Tnp_1-associated GO992_00145 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal GO992_00145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GO992_00150 PF13247 4Fe-4S dicluster domain GO992_00155 PF03916 Polysulphide reductase, NrfD GO992_00160 PF00374 Nickel-dependent hydrogenase GO992_00165 PF01750 Hydrogenase maturation protease GO992_00170 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE GO992_00175 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_00180 PF00528 Binding-protein-dependent transport system inner membrane component GO992_00185 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_00185 PF00528 Binding-protein-dependent transport system inner membrane component GO992_00190 PF00005 ABC transporter GO992_00195 PF08402 TOBE domain GO992_00195 PF00005 ABC transporter GO992_00200 PF02492 CobW/HypB/UreG, nucleotide-binding domain GO992_00205 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GO992_00210 PF00586 AIR synthase related protein, N-terminal domain GO992_00210 PF02769 AIR synthase related protein, C-terminal domain GO992_00215 PF01924 Hydrogenase formation hypA family GO992_00220 PF01455 HupF/HypC family GO992_00225 PF17788 HypF Kae1-like domain GO992_00225 PF01300 Telomere recombination GO992_00225 PF07503 HypF finger GO992_00225 PF00708 Acylphosphatase GO992_00230 PF00009 Elongation factor Tu GTP binding domain GO992_00230 PF03144 Elongation factor Tu domain 2 GO992_00230 PF09105 Elongation factor SelB, winged helix GO992_00230 PF09106 Elongation factor SelB, winged helix GO992_00230 PF09107 Elongation factor SelB, winged helix GO992_00235 PF12390 Selenocysteine synthase N terminal GO992_00235 PF03841 L-seryl-tRNA selenium transferase GO992_00245 PF01750 Hydrogenase maturation protease GO992_00250 PF07450 Formate hydrogenlyase maturation protein HycH GO992_00255 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GO992_00260 PF12838 4Fe-4S dicluster domain GO992_00265 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GO992_00265 PF00374 Nickel-dependent hydrogenase GO992_00265 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GO992_00270 PF00146 NADH dehydrogenase GO992_00275 PF00361 Proton-conducting membrane transporter GO992_00280 PF00037 4Fe-4S binding domain GO992_00280 PF12798 4Fe-4S binding domain GO992_00285 PF02705 K+ potassium transporter GO992_00310 PF00872 Transposase, Mutator family GO992_00315 PF01609 Transposase DDE domain GO992_00325 PF09013 YopH, N-terminal GO992_00325 PF00102 Protein-tyrosine phosphatase GO992_00360 PF00480 ROK family GO992_00360 PF01047 MarR family GO992_00365 PF01979 Amidohydrolase family GO992_00370 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GO992_00380 PF02838 Glycosyl hydrolase family 20, domain 2 GO992_00380 PF00728 Glycosyl hydrolase family 20, catalytic domain GO992_00380 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain GO992_00380 PF03173 Putative carbohydrate binding domain GO992_00385 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO992_00385 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GO992_00390 PF01475 Ferric uptake regulator family GO992_00400 PF00258 Flavodoxin GO992_00405 PF01402 Ribbon-helix-helix protein, copG family GO992_00415 PF12697 Alpha/beta hydrolase family GO992_00420 PF03925 SeqA protein C-terminal domain GO992_00420 PF17206 SeqA protein N-terminal domain GO992_00425 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GO992_00425 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GO992_00425 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GO992_00425 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GO992_00435 PF01047 MarR family GO992_00440 PF13406 Transglycosylase SLT domain GO992_00445 PF01066 CDP-alcohol phosphatidyltransferase GO992_00450 PF00005 ABC transporter GO992_00460 PF13416 Bacterial extracellular solute-binding protein GO992_00465 PF00403 Heavy-metal-associated domain GO992_00465 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_00465 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO992_00470 PF02627 Carboxymuconolactone decarboxylase family GO992_00480 PF01625 Peptide methionine sulfoxide reductase GO992_00495 PF01103 Surface antigen GO992_00495 PF07244 Surface antigen variable number repeat GO992_00495 PF17243 POTRA domain TamA domain 1 GO992_00500 PF04357 TamB, inner membrane protein subunit of TAM complex GO992_00515 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GO992_00520 PF00563 EAL domain GO992_00520 PF03707 Bacterial signalling protein N terminal repeat GO992_00520 PF00990 Diguanylate cyclase, GGDEF domain GO992_00525 PF01464 Transglycosylase SLT domain GO992_00525 PF14718 Soluble lytic murein transglycosylase L domain GO992_00530 PF00356 Bacterial regulatory proteins, lacI family GO992_00540 PF03061 Thioesterase superfamily GO992_00550 PF03372 Endonuclease/Exonuclease/phosphatase family GO992_00555 PF01476 LysM domain GO992_00555 PF01464 Transglycosylase SLT domain GO992_00560 PF16123 Hydroxyacylglutathione hydrolase C-terminus GO992_00560 PF00753 Metallo-beta-lactamase superfamily GO992_00565 PF08241 Methyltransferase domain GO992_00570 PF00075 RNase H GO992_00575 PF00929 Exonuclease GO992_00600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GO992_00600 PF02770 Acyl-CoA dehydrogenase, middle domain GO992_00600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GO992_00600 PF09317 Domain of unknown function (DUF1974) GO992_00605 PF13580 SIS domain GO992_00610 PF13230 Glutamine amidotransferases class-II GO992_00620 PF01933 Uncharacterised protein family UPF0052 GO992_00630 PF00072 Response regulator receiver domain GO992_00630 PF01627 Hpt domain GO992_00630 PF00512 His Kinase A (phospho-acceptor) domain GO992_00630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_00630 PF00672 HAMP domain GO992_00630 PF17149 Periplasmic sensor domain found in signal transduction proteins GO992_00640 PF00196 Bacterial regulatory proteins, luxR family GO992_00640 PF00072 Response regulator receiver domain GO992_00645 PF00672 HAMP domain GO992_00645 PF07730 Histidine kinase GO992_00645 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GO992_00645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_00650 PF04055 Radical SAM superfamily GO992_00650 PF06463 Molybdenum Cofactor Synthesis C GO992_00655 PF12838 4Fe-4S dicluster domain GO992_00655 PF13187 4Fe-4S dicluster domain GO992_00665 PF01568 Molydopterin dinucleotide binding domain GO992_00665 PF00384 Molybdopterin oxidoreductase GO992_00665 PF10518 TAT (twin-arginine translocation) pathway signal sequence GO992_00665 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GO992_00670 PF12800 4Fe-4S binding domain GO992_00670 PF12838 4Fe-4S dicluster domain GO992_00675 PF12801 4Fe-4S binding domain GO992_00675 PF12837 4Fe-4S binding domain GO992_00680 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) GO992_00685 PF03264 NapC/NirT cytochrome c family, N-terminal region GO992_00695 PF01967 MoaC family GO992_00700 PF02597 ThiS family GO992_00705 PF02391 MoaE protein GO992_00715 PF00528 Binding-protein-dependent transport system inner membrane component GO992_00720 PF03459 TOBE domain GO992_00720 PF00005 ABC transporter GO992_00725 PF00561 alpha/beta hydrolase fold GO992_00730 PF06406 StbA protein GO992_00740 PF06291 Bor protein GO992_00745 PF06291 Bor protein GO992_00750 PF00899 ThiF family GO992_00755 PF00994 Probable molybdopterin binding domain GO992_00755 PF03454 MoeA C-terminal region (domain IV) GO992_00755 PF03453 MoeA N-terminal region (domain I and II) GO992_00760 PF01227 GTP cyclohydrolase I GO992_00765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_00765 PF00672 HAMP domain GO992_00765 PF17200 Single Cache domain 2 GO992_00770 PF01268 Formate--tetrahydrofolate ligase GO992_00780 PF03466 LysR substrate binding domain GO992_00780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_00785 PF04264 YceI-like domain GO992_00820 PF01546 Peptidase family M20/M25/M40 GO992_00820 PF07687 Peptidase dimerisation domain GO992_00830 PF17944 Arginine decarboxylase C-terminal helical extension GO992_00830 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO992_00830 PF17810 Arginine decarboxylase helical bundle domain GO992_00850 PF07690 Major Facilitator Superfamily GO992_00855 PF00248 Aldo/keto reductase family GO992_00860 PF03992 Antibiotic biosynthesis monooxygenase GO992_00885 PF03466 LysR substrate binding domain GO992_00885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_00890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GO992_00890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GO992_00895 PF00230 Major intrinsic protein GO992_00900 PF07690 Major Facilitator Superfamily GO992_00905 PF00455 DeoR C terminal sensor domain GO992_00905 PF08220 DeoR-like helix-turn-helix domain GO992_00915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GO992_00915 PF01266 FAD dependent oxidoreductase GO992_00920 PF03009 Glycerophosphoryl diester phosphodiesterase family GO992_00925 PF00793 DAHP synthetase I family GO992_00930 PF02153 Prephenate dehydrogenase GO992_00930 PF01817 Chorismate mutase type II GO992_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_00935 PF03466 LysR substrate binding domain GO992_00940 PF04219 Protein of unknown function, DUF GO992_00945 PF03974 Ecotin GO992_00965 PF00326 Prolyl oligopeptidase family GO992_00965 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain GO992_00970 PF00593 TonB dependent receptor GO992_00970 PF07715 TonB-dependent Receptor Plug Domain GO992_00975 PF00884 Sulfatase GO992_00975 PF11893 Domain of unknown function (DUF3413) GO992_00980 PF07208 Protein of unknown function (DUF1414) GO992_00985 PF04245 37-kD nucleoid-associated bacterial protein GO992_00995 PF01547 Bacterial extracellular solute-binding protein GO992_01000 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01000 PF14785 Maltose transport system permease protein MalF P2 domain GO992_01005 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01010 PF00005 ABC transporter GO992_01010 PF08402 TOBE domain GO992_01015 PF03976 Polyphosphate kinase 2 (PPK2) GO992_01020 PF00561 alpha/beta hydrolase fold GO992_01025 PF01594 AI-2E family transporter GO992_01030 PF01206 Sulfurtransferase TusA GO992_01035 PF07720 Tetratricopeptide repeat GO992_01035 PF01435 Peptidase family M48 GO992_01045 PF03960 ArsC family GO992_01055 PF04336 Acyl carrier protein phosphodiesterase GO992_01060 PF03956 Lysine exporter LysO GO992_01065 PF00005 ABC transporter GO992_01070 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_01075 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01080 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01095 PF04055 Radical SAM superfamily GO992_01100 PF00563 EAL domain GO992_01100 PF00990 Diguanylate cyclase, GGDEF domain GO992_01100 PF03707 Bacterial signalling protein N terminal repeat GO992_01105 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO992_01105 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_01110 PF00207 Alpha-2-macroglobulin family GO992_01110 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain GO992_01110 PF11974 Bacterial alpha-2-macroglobulin MG3 domain GO992_01110 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain GO992_01110 PF17962 Bacterial macroglobulin domain 6 GO992_01110 PF01835 MG2 domain GO992_01110 PF07678 A-macroglobulin TED domain GO992_01110 PF07703 Alpha-2-macroglobulin bait region domain GO992_01110 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain GO992_01115 PF00912 Transglycosylase GO992_01115 PF00905 Penicillin binding protein transpeptidase domain GO992_01115 PF06832 Penicillin-Binding Protein C-terminus Family GO992_01125 PF02926 THUMP domain GO992_01125 PF02568 Thiamine biosynthesis protein (ThiI) GO992_01135 PF03458 UPF0126 domain GO992_01155 PF00669 Bacterial flagellin N-terminal helical region GO992_01155 PF00700 Bacterial flagellin C-terminal helical region GO992_01170 PF01497 Periplasmic binding protein GO992_01180 PF01048 Phosphorylase superfamily GO992_01190 PF02535 ZIP Zinc transporter GO992_01195 PF12729 Four helix bundle sensory module for signal transduction GO992_01195 PF00672 HAMP domain GO992_01195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_01200 PF00459 Inositol monophosphatase family GO992_01220 PF02798 Glutathione S-transferase, N-terminal domain GO992_01220 PF00043 Glutathione S-transferase, C-terminal domain GO992_01230 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01235 PF00528 Binding-protein-dependent transport system inner membrane component GO992_01235 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_01240 PF00005 ABC transporter GO992_01245 PF07690 Major Facilitator Superfamily GO992_01250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_01250 PF03466 LysR substrate binding domain GO992_01255 PF02634 FdhD/NarQ family GO992_01260 PF00384 Molybdopterin oxidoreductase GO992_01270 PF05164 Cell division protein ZapA GO992_01275 PF03695 Uncharacterised protein family (UPF0149) GO992_01280 PF01494 FAD binding domain GO992_01285 PF01494 FAD binding domain GO992_01290 PF01571 Aminomethyltransferase folate-binding domain GO992_01290 PF08669 Glycine cleavage T-protein C-terminal barrel domain GO992_01295 PF01597 Glycine cleavage H-protein GO992_01300 PF02347 Glycine cleavage system P-protein GO992_01310 PF07690 Major Facilitator Superfamily GO992_01315 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_01315 PF13192 Thioredoxin domain GO992_01320 PF10417 C-terminal domain of 1-Cys peroxiredoxin GO992_01320 PF00578 AhpC/TSA family GO992_01325 PF00571 CBS domain GO992_01330 PF02547 Queuosine biosynthesis protein GO992_01335 PF01702 Queuine tRNA-ribosyltransferase GO992_01340 PF02699 Preprotein translocase subunit GO992_01345 PF02355 Protein export membrane protein GO992_01345 PF13721 SecD export protein N-terminal TM region GO992_01345 PF07549 SecD/SecF GG Motif GO992_01350 PF02355 Protein export membrane protein GO992_01350 PF07549 SecD/SecF GG Motif GO992_01355 PF00581 Rhodanese-like domain GO992_01360 PF07719 Tetratricopeptide repeat GO992_01360 PF13181 Tetratricopeptide repeat GO992_01385 PF00588 SpoU rRNA Methylase family GO992_01390 PF02082 Transcriptional regulator GO992_01395 PF00266 Aminotransferase class-V GO992_01400 PF01592 NifU-like N terminal domain GO992_01405 PF01521 Iron-sulphur cluster biosynthesis GO992_01410 PF07743 HSCB C-terminal oligomerisation domain GO992_01410 PF00226 DnaJ domain GO992_01415 PF00012 Hsp70 protein GO992_01420 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_01425 PF00883 Cytosol aminopeptidase family, catalytic domain GO992_01425 PF12404 Peptidase GO992_01430 PF12404 Peptidase GO992_01430 PF00883 Cytosol aminopeptidase family, catalytic domain GO992_01435 PF00334 Nucleoside diphosphate kinase GO992_01440 PF04055 Radical SAM superfamily GO992_01450 PF13464 Domain of unknown function (DUF4115) GO992_01455 PF04551 GcpE protein GO992_01460 PF13393 Histidyl-tRNA synthetase GO992_01460 PF03129 Anticodon binding domain GO992_01465 PF09976 Tetratricopeptide repeat-like domain GO992_01470 PF13360 PQQ-like domain GO992_01475 PF01926 50S ribosome-binding GTPase GO992_01475 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GO992_01480 PF07191 zinc-ribbons GO992_01485 PF01464 Transglycosylase SLT domain GO992_01485 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_01490 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GO992_01490 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GO992_01490 PF02769 AIR synthase related protein, C-terminal domain GO992_01500 PF05661 Protein of unknown function (DUF808) GO992_01505 PF08439 Oligopeptidase F GO992_01505 PF01432 Peptidase family M3 GO992_01520 PF01609 Transposase DDE domain GO992_01520 PF13808 DDE_Tnp_1-associated GO992_01530 PF00682 HMGL-like GO992_01550 PF00378 Enoyl-CoA hydratase/isomerase GO992_01555 PF01039 Carboxyl transferase domain GO992_01560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GO992_01560 PF02770 Acyl-CoA dehydrogenase, middle domain GO992_01560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GO992_01565 PF00171 Aldehyde dehydrogenase family GO992_01575 PF00378 Enoyl-CoA hydratase/isomerase GO992_01580 PF00378 Enoyl-CoA hydratase/isomerase GO992_01585 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GO992_01585 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GO992_01595 PF13520 Amino acid permease GO992_01600 PF01925 Sulfite exporter TauE/SafE GO992_01620 PF00872 Transposase, Mutator family GO992_01640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO992_01640 PF00356 Bacterial regulatory proteins, lacI family GO992_01645 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO992_01645 PF00381 PTS HPr component phosphorylation site GO992_01650 PF00294 pfkB family carbohydrate kinase GO992_01655 PF02378 Phosphotransferase system, EIIC GO992_01655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO992_01660 PF06945 Protein of unknown function (DUF1289) GO992_01665 PF03562 MltA specific insert domain GO992_01665 PF06725 3D domain GO992_01670 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_01675 PF00268 Ribonucleotide reductase, small chain GO992_01680 PF02867 Ribonucleotide reductase, barrel domain GO992_01680 PF00317 Ribonucleotide reductase, all-alpha domain GO992_01680 PF03477 ATP cone domain GO992_01685 PF13419 Haloacid dehalogenase-like hydrolase GO992_01695 PF03989 DNA gyrase C-terminal domain, beta-propeller GO992_01695 PF00521 DNA gyrase/topoisomerase IV, subunit A GO992_01710 PF03129 Anticodon binding domain GO992_01710 PF02824 TGS domain GO992_01710 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO992_01710 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO992_01715 PF00707 Translation initiation factor IF-3, C-terminal domain GO992_01715 PF05198 Translation initiation factor IF-3, N-terminal domain GO992_01720 PF01632 Ribosomal protein L35 GO992_01725 PF00453 Ribosomal protein L20 GO992_01730 PF01409 tRNA synthetases class II core domain (F) GO992_01730 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GO992_01735 PF03483 B3/4 domain GO992_01735 PF03484 tRNA synthetase B5 domain GO992_01735 PF03147 Ferredoxin-fold anticodon binding domain GO992_01735 PF01588 Putative tRNA binding domain GO992_01735 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GO992_01740 PF00216 Bacterial DNA-binding protein GO992_01760 PF02146 Sir2 family GO992_01770 PF03707 Bacterial signalling protein N terminal repeat GO992_01770 PF00563 EAL domain GO992_01770 PF00990 Diguanylate cyclase, GGDEF domain GO992_01775 PF00356 Bacterial regulatory proteins, lacI family GO992_01780 PF00294 pfkB family carbohydrate kinase GO992_01785 PF13407 Periplasmic binding protein domain GO992_01790 PF02653 Branched-chain amino acid transport system / permease component GO992_01795 PF00005 ABC transporter GO992_01800 PF05025 RbsD / FucU transport protein family GO992_01805 PF00043 Glutathione S-transferase, C-terminal domain GO992_01805 PF02798 Glutathione S-transferase, N-terminal domain GO992_01820 PF01171 PP-loop family GO992_01825 PF00582 Universal stress protein family GO992_01830 PF00027 Cyclic nucleotide-binding domain GO992_01830 PF13545 Crp-like helix-turn-helix domain GO992_01845 PF00403 Heavy-metal-associated domain GO992_01855 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GO992_01855 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP GO992_01870 PF00115 Cytochrome C and Quinol oxidase polypeptide I GO992_01880 PF13185 GAF domain GO992_01885 PF04352 ProQ/FINO family GO992_01885 PF17516 ProQ C-terminal domain GO992_01890 PF17804 Tail specific protease N-terminal domain GO992_01890 PF11818 C-terminal domain of tail specific protease (DUF3340) GO992_01890 PF00595 PDZ domain GO992_01890 PF03572 Peptidase family S41 GO992_01895 PF11940 Domain of unknown function (DUF3458) Ig-like fold GO992_01895 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GO992_01895 PF01433 Peptidase family M1 domain GO992_01920 PF01180 Dihydroorotate dehydrogenase GO992_01925 PF07126 Cell-division protein ZapC GO992_01940 PF07745 Glycosyl hydrolase family 53 GO992_01945 PF08532 Beta-galactosidase trimerisation domain GO992_01945 PF08533 Beta-galactosidase C-terminal domain GO992_01945 PF02449 Beta-galactosidase GO992_01950 PF00367 phosphotransferase system, EIIB GO992_01950 PF02378 Phosphotransferase system, EIIC GO992_01960 PF00444 Ribosomal protein L36 GO992_01965 PF01197 Ribosomal protein L31 GO992_01980 PF01863 Protein of unknown function DUF45 GO992_01995 PF03606 C4-dicarboxylate anaerobic carrier GO992_02005 PF01266 FAD dependent oxidoreductase GO992_02005 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GO992_02010 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_02010 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_02025 PF00285 Citrate synthase, C-terminal domain GO992_02030 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GO992_02035 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GO992_02040 PF00890 FAD binding domain GO992_02040 PF02910 Fumarate reductase flavoprotein C-term GO992_02045 PF13085 2Fe-2S iron-sulfur cluster binding domain GO992_02050 PF00676 Dehydrogenase E1 component GO992_02050 PF16870 2-oxoglutarate dehydrogenase C-terminal GO992_02050 PF02779 Transketolase, pyrimidine binding domain GO992_02050 PF16078 2-oxoglutarate dehydrogenase N-terminus GO992_02055 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO992_02055 PF02817 e3 binding domain GO992_02055 PF00364 Biotin-requiring enzyme GO992_02060 PF00549 CoA-ligase GO992_02060 PF08442 ATP-grasp domain GO992_02065 PF02629 CoA binding domain GO992_02065 PF00549 CoA-ligase GO992_02070 PF03692 Putative zinc- or iron-chelating domain GO992_02075 PF01228 Glycine radical GO992_02075 PF02901 Pyruvate formate lyase-like GO992_02080 PF01226 Formate/nitrite transporter GO992_02085 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GO992_02085 PF18381 YcaO cyclodehydratase C-terminal domain GO992_02090 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO992_02090 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO992_02105 PF01609 Transposase DDE domain GO992_02105 PF13808 DDE_Tnp_1-associated GO992_02150 PF07152 YaeQ protein GO992_02160 PF07690 Major Facilitator Superfamily GO992_02165 PF00005 ABC transporter GO992_02170 PF01032 FecCD transport family GO992_02190 PF05433 Glycine zipper 2TM domain GO992_02200 PF03606 C4-dicarboxylate anaerobic carrier GO992_02235 PF00343 Carbohydrate phosphorylase GO992_02240 PF00939 Sodium:sulfate symporter transmembrane region GO992_02245 PF00085 Thioredoxin GO992_02250 PF00672 HAMP domain GO992_02250 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO992_02250 PF00072 Response regulator receiver domain GO992_02250 PF01627 Hpt domain GO992_02250 PF00512 His Kinase A (phospho-acceptor) domain GO992_02250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_02260 PF00005 ABC transporter GO992_02260 PF00664 ABC transporter transmembrane region GO992_02275 PF01575 MaoC like domain GO992_02280 PF00561 alpha/beta hydrolase fold GO992_02280 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus GO992_02300 PF08543 Phosphomethylpyrimidine kinase GO992_02305 PF03992 Antibiotic biosynthesis monooxygenase GO992_02310 PF00465 Iron-containing alcohol dehydrogenase GO992_02330 PF01928 CYTH domain GO992_02355 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GO992_02365 PF13673 Acetyltransferase (GNAT) domain GO992_02370 PF00271 Helicase conserved C-terminal domain GO992_02370 PF00270 DEAD/DEAH box helicase GO992_02375 PF00255 Glutathione peroxidase GO992_02385 PF01820 D-ala D-ala ligase N-terminus GO992_02385 PF07478 D-ala D-ala ligase C-terminus GO992_02400 PF01925 Sulfite exporter TauE/SafE GO992_02405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_02405 PF03466 LysR substrate binding domain GO992_02420 PF11398 Protein of unknown function (DUF2813) GO992_02430 PF00128 Alpha amylase, catalytic domain GO992_02430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GO992_02480 PF13419 Haloacid dehalogenase-like hydrolase GO992_02495 PF13808 DDE_Tnp_1-associated GO992_02495 PF01609 Transposase DDE domain GO992_02545 PF09013 YopH, N-terminal GO992_02545 PF00102 Protein-tyrosine phosphatase GO992_02555 PF13592 Winged helix-turn helix GO992_02555 PF13358 DDE superfamily endonuclease GO992_02580 PF01713 Smr domain GO992_02585 PF05175 Methyltransferase small domain GO992_02590 PF01264 Chorismate synthase GO992_02600 PF00271 Helicase conserved C-terminal domain GO992_02600 PF00270 DEAD/DEAH box helicase GO992_02630 PF13654 AAA domain GO992_02630 PF05362 Lon protease (S16) C-terminal proteolytic domain GO992_02635 PF07977 FabA-like domain GO992_02640 PF04957 Ribosome modulation factor GO992_02660 PF02926 THUMP domain GO992_02660 PF10672 S-adenosylmethionine-dependent methyltransferase GO992_02660 PF01170 Putative RNA methylase family UPF0020 GO992_02670 PF01381 Helix-turn-helix GO992_02700 PF00106 short chain dehydrogenase GO992_02725 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain GO992_02725 PF06974 Protein of unknown function (DUF1298) GO992_02740 PF03972 MmgE/PrpD family GO992_02745 PF00285 Citrate synthase, C-terminal domain GO992_02760 PF04403 Paraquat-inducible protein A GO992_02765 PF02470 MlaD protein GO992_02770 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF GO992_02770 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF GO992_02770 PF01189 16S rRNA methyltransferase RsmB/F GO992_02780 PF00589 Phage integrase family GO992_02785 PF01026 TatD related DNase GO992_02790 PF09115 DNA polymerase III, delta subunit, C terminal GO992_02795 PF02223 Thymidylate kinase GO992_02800 PF02618 YceG-like family GO992_02805 PF01063 Amino-transferase class IV GO992_02810 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_02810 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_02815 PF00550 Phosphopantetheine attachment site GO992_02825 PF00698 Acyl transferase domain GO992_02830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO992_02830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO992_02835 PF02504 Fatty acid synthesis protein GO992_02840 PF01783 Ribosomal L32p protein family GO992_02845 PF02620 Large ribosomal RNA subunit accumulation protein YceD GO992_02850 PF02545 Maf-like protein GO992_02860 PF01479 S4 domain GO992_02860 PF00849 RNA pseudouridylate synthase GO992_02865 PF00575 S1 RNA binding domain GO992_02865 PF10150 Ribonuclease E/G family GO992_02865 PF12111 Polyribonucleotide phosphorylase C terminal GO992_02875 PF00692 dUTPase GO992_02880 PF00485 Phosphoribulokinase / Uridine kinase family GO992_02885 PF10609 NUBPL iron-transfer P-loop NTPase GO992_02890 PF01588 Putative tRNA binding domain GO992_02890 PF09334 tRNA synthetases class I (M) GO992_02890 PF08264 Anticodon-binding domain of tRNA GO992_02895 PF00043 Glutathione S-transferase, C-terminal domain GO992_02895 PF13417 Glutathione S-transferase, N-terminal domain GO992_02900 PF00708 Acylphosphatase GO992_02910 PF12729 Four helix bundle sensory module for signal transduction GO992_02910 PF00672 HAMP domain GO992_02910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_02915 PF10672 S-adenosylmethionine-dependent methyltransferase GO992_02915 PF17785 PUA-like domain GO992_02930 PF00586 AIR synthase related protein, N-terminal domain GO992_02930 PF02769 AIR synthase related protein, C-terminal domain GO992_02940 PF00753 Metallo-beta-lactamase superfamily GO992_02945 PF01386 Ribosomal L25p family GO992_02955 PF11898 Domain of unknown function (DUF3418) GO992_02955 PF00270 DEAD/DEAH box helicase GO992_02955 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold GO992_02955 PF04408 Helicase associated domain (HA2) GO992_02955 PF00271 Helicase conserved C-terminal domain GO992_02965 PF00072 Response regulator receiver domain GO992_02965 PF00196 Bacterial regulatory proteins, luxR family GO992_02975 PF02575 YbaB/EbfC DNA-binding family GO992_02980 PF12170 DNA polymerase III tau subunit V interacting with alpha GO992_02980 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GO992_02980 PF12169 DNA polymerase III subunits gamma and tau domain III GO992_02985 PF00156 Phosphoribosyl transferase domain GO992_02990 PF04304 Protein of unknown function (DUF454) GO992_02995 PF01207 Dihydrouridine synthase (Dus) GO992_03010 PF01612 3'-5' exonuclease GO992_03010 PF00570 HRDC domain GO992_03015 PF13193 AMP-binding enzyme C-terminal domain GO992_03015 PF00501 AMP-binding enzyme GO992_03020 PF12697 Alpha/beta hydrolase family GO992_03030 PF00814 Glycoprotease family GO992_03035 PF13307 Helicase C-terminal domain GO992_03035 PF04851 Type III restriction enzyme, res subunit GO992_03045 PF01634 ATP phosphoribosyltransferase GO992_03045 PF08029 HisG, C-terminal domain GO992_03050 PF00815 Histidinol dehydrogenase GO992_03055 PF00155 Aminotransferase class I and II GO992_03060 PF00475 Imidazoleglycerol-phosphate dehydratase GO992_03060 PF08645 Polynucleotide kinase 3 phosphatase GO992_03065 PF00117 Glutamine amidotransferase class-I GO992_03070 PF00977 Histidine biosynthesis protein GO992_03085 PF00512 His Kinase A (phospho-acceptor) domain GO992_03085 PF01627 Hpt domain GO992_03085 PF00072 Response regulator receiver domain GO992_03085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_03090 PF00977 Histidine biosynthesis protein GO992_03095 PF01502 Phosphoribosyl-AMP cyclohydrolase GO992_03095 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GO992_03105 PF08279 HTH domain GO992_03105 PF13280 WYL domain GO992_03135 PF00425 chorismate binding enzyme GO992_03135 PF04715 Anthranilate synthase component I, N terminal region GO992_03140 PF00293 NUDIX domain GO992_03145 PF03222 Tryptophan/tyrosine permease family GO992_03150 PF00375 Sodium:dicarboxylate symporter family GO992_03155 PF00271 Helicase conserved C-terminal domain GO992_03155 PF09382 RQC domain GO992_03155 PF16124 RecQ zinc-binding GO992_03155 PF00270 DEAD/DEAH box helicase GO992_03155 PF00570 HRDC domain GO992_03160 PF06798 PrkA serine protein kinase C-terminal domain GO992_03160 PF08298 PrkA AAA domain GO992_03165 PF04285 Protein of unknown function (DUF444) GO992_03170 PF04293 SpoVR like protein GO992_03175 PF07840 FadR C-terminal domain GO992_03175 PF00392 Bacterial regulatory proteins, gntR family GO992_03180 PF06450 Bacterial Na+/H+ antiporter B (NhaB) GO992_03185 PF02600 Disulfide bond formation protein DsbB GO992_03190 PF09335 SNARE associated Golgi protein GO992_03200 PF17757 UvrB interaction domain GO992_03200 PF00271 Helicase conserved C-terminal domain GO992_03200 PF04851 Type III restriction enzyme, res subunit GO992_03200 PF02151 UvrB/uvrC motif GO992_03200 PF12344 Ultra-violet resistance protein B GO992_03210 PF02080 TrkA-C domain GO992_03210 PF06826 Predicted Permease Membrane Region GO992_03215 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_03215 PF01464 Transglycosylase SLT domain GO992_03230 PF01970 Tripartite tricarboxylate transporter TctA family GO992_03235 PF00072 Response regulator receiver domain GO992_03235 PF08279 HTH domain GO992_03235 PF12431 Transcriptional regulator GO992_03245 PF01047 MarR family GO992_03245 PF00480 ROK family GO992_03250 PF00672 HAMP domain GO992_03250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_03250 PF17200 Single Cache domain 2 GO992_03255 PF02810 SEC-C motif GO992_03260 PF01266 FAD dependent oxidoreductase GO992_03260 PF04324 BFD-like [2Fe-2S] binding domain GO992_03265 PF00890 FAD binding domain GO992_03270 PF02754 Cysteine-rich domain GO992_03270 PF13183 4Fe-4S dicluster domain GO992_03275 PF02335 Cytochrome c552 GO992_03280 PF13435 Cytochrome c554 and c-prime GO992_03280 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) GO992_03285 PF00037 4Fe-4S binding domain GO992_03285 PF13247 4Fe-4S dicluster domain GO992_03290 PF03916 Polysulphide reductase, NrfD GO992_03295 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GO992_03295 PF01578 Cytochrome C assembly protein GO992_03300 PF08534 Redoxin GO992_03305 PF03918 Cytochrome C biogenesis protein GO992_03315 PF00768 D-alanyl-D-alanine carboxypeptidase GO992_03320 PF01212 Beta-eliminating lyase GO992_03335 PF01266 FAD dependent oxidoreductase GO992_03370 PF08267 Cobalamin-independent synthase, N-terminal domain GO992_03370 PF01717 Cobalamin-independent synthase, Catalytic domain GO992_03385 PF07715 TonB-dependent Receptor Plug Domain GO992_03385 PF00593 TonB dependent receptor GO992_03390 PF06445 GyrI-like small molecule binding domain GO992_03390 PF12833 Helix-turn-helix domain GO992_03395 PF00106 short chain dehydrogenase GO992_03400 PF03466 LysR substrate binding domain GO992_03400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_03415 PF01053 Cys/Met metabolism PLP-dependent enzyme GO992_03450 PF03330 Lytic transglycolase GO992_03450 PF05036 Sporulation related domain GO992_03455 PF04310 MukB N-terminal GO992_03455 PF16330 MukB hinge domain GO992_03460 PF04288 MukE-like family GO992_03465 PF17192 MukF middle domain GO992_03465 PF17193 MukF C-terminal domain GO992_03465 PF03882 MukF winged-helix domain GO992_03475 PF02698 DUF218 domain GO992_03480 PF00121 Triosephosphate isomerase GO992_03485 PF00365 Phosphofructokinase GO992_03520 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GO992_03550 PF03831 PhnA domain GO992_03550 PF08274 PhnA Zinc-Ribbon GO992_03555 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GO992_03555 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GO992_03555 PF00378 Enoyl-CoA hydratase/isomerase GO992_03560 PF00108 Thiolase, N-terminal domain GO992_03560 PF02803 Thiolase, C-terminal domain GO992_03565 PF17863 AAA lid domain GO992_03565 PF07726 ATPase family associated with various cellular activities (AAA) GO992_03580 PF13519 von Willebrand factor type A domain GO992_03580 PF17863 AAA lid domain GO992_03580 PF07728 AAA domain (dynein-related subfamily) GO992_03595 PF04545 Sigma-70, region 4 GO992_03595 PF04542 Sigma-70 region 2 GO992_03605 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GO992_03610 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GO992_03615 PF08668 HDOD domain GO992_03615 PF00563 EAL domain GO992_03620 PF00108 Thiolase, N-terminal domain GO992_03620 PF02803 Thiolase, C-terminal domain GO992_03625 PF09278 MerR, DNA binding GO992_03625 PF00376 MerR family regulatory protein GO992_03630 PF00375 Sodium:dicarboxylate symporter family GO992_03635 PF06865 Pyrimidine/purine nucleoside phosphorylase GO992_03640 PF03315 Serine dehydratase beta chain GO992_03640 PF03313 Serine dehydratase alpha chain GO992_03645 PF03313 Serine dehydratase alpha chain GO992_03645 PF03315 Serine dehydratase beta chain GO992_03650 PF13406 Transglycosylase SLT domain GO992_03655 PF05166 YcgL domain GO992_03660 PF05209 Septum formation inhibitor MinC, N-terminal domain GO992_03660 PF03775 Septum formation inhibitor MinC, C-terminal domain GO992_03665 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GO992_03670 PF03776 Septum formation topological specificity factor MinE GO992_03675 PF04269 Protein of unknown function, DUF440 GO992_03680 PF00912 Transglycosylase GO992_03685 PF04269 Protein of unknown function, DUF440 GO992_03695 PF13509 S1 domain GO992_03695 PF17783 CvfB-like winged helix domain GO992_03720 PF02525 Flavodoxin-like fold GO992_03725 PF00892 EamA-like transporter family GO992_03730 PF02222 ATP-grasp domain GO992_03735 PF13419 Haloacid dehalogenase-like hydrolase GO992_03745 PF00677 Lumazine binding domain GO992_03750 PF06786 Uncharacterised protein family (UPF0253) GO992_03755 PF01554 MatE GO992_03790 PF03104 DNA polymerase family B, exonuclease domain GO992_03790 PF00136 DNA polymerase family B GO992_03800 PF00990 Diguanylate cyclase, GGDEF domain GO992_03815 PF03279 Bacterial lipid A biosynthesis acyltransferase GO992_03820 PF03279 Bacterial lipid A biosynthesis acyltransferase GO992_03830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_03830 PF03466 LysR substrate binding domain GO992_03835 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GO992_03835 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GO992_03840 PF01261 Xylose isomerase-like TIM barrel GO992_03845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_03845 PF03466 LysR substrate binding domain GO992_03855 PF00232 Glycosyl hydrolase family 1 GO992_03860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_03860 PF03466 LysR substrate binding domain GO992_03865 PF01609 Transposase DDE domain GO992_03865 PF13808 DDE_Tnp_1-associated GO992_03900 PF17912 MalK OB fold domain GO992_03900 PF00005 ABC transporter GO992_03910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_03910 PF00672 HAMP domain GO992_03920 PF07745 Glycosyl hydrolase family 53 GO992_03925 PF07745 Glycosyl hydrolase family 53 GO992_03930 PF02264 LamB porin GO992_03935 PF00356 Bacterial regulatory proteins, lacI family GO992_03940 PF16363 GDP-mannose 4,6 dehydratase GO992_03950 PF10509 Galactokinase galactose-binding signature GO992_03950 PF00288 GHMP kinases N terminal domain GO992_03950 PF08544 GHMP kinases C terminal GO992_03960 PF02653 Branched-chain amino acid transport system / permease component GO992_03965 PF00005 ABC transporter GO992_03970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO992_03975 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GO992_03980 PF00596 Class II Aldolase and Adducin N-terminal domain GO992_03985 PF11762 L-arabinose isomerase C-terminal domain GO992_03985 PF02610 L-arabinose isomerase GO992_03990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_03990 PF03466 LysR substrate binding domain GO992_03995 PF00155 Aminotransferase class I and II GO992_04000 PF00795 Carbon-nitrogen hydrolase GO992_04005 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_04015 PF08411 Exonuclease C-terminal GO992_04015 PF00929 Exonuclease GO992_04030 PF03788 LrgA family GO992_04035 PF04172 LrgB-like family GO992_04040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GO992_04040 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region GO992_04045 PF00501 AMP-binding enzyme GO992_04050 PF08891 YfcL protein GO992_04060 PF03741 Integral membrane protein TerC family GO992_04065 PF00691 OmpA family GO992_04070 PF00990 Diguanylate cyclase, GGDEF domain GO992_04070 PF17152 Periplasmic sensor domain GO992_04075 PF13689 YfiR/HmsC-like GO992_04080 PF00158 Sigma-54 interaction domain GO992_04080 PF18024 Helix-turn-helix domain GO992_04085 PF01329 Pterin 4 alpha carbinolamine dehydratase GO992_04090 PF00351 Biopterin-dependent aromatic amino acid hydroxylase GO992_04095 PF05128 Domain of unknown function (DUF697) GO992_04100 PF04317 YcjX-like family, DUF463 GO992_04110 PF06667 Phage shock protein B GO992_04115 PF04012 PspA/IM30 family GO992_04120 PF02954 Bacterial regulatory protein, Fis family GO992_04120 PF00158 Sigma-54 interaction domain GO992_04125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_04130 PF00528 Binding-protein-dependent transport system inner membrane component GO992_04135 PF00528 Binding-protein-dependent transport system inner membrane component GO992_04135 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_04140 PF00005 ABC transporter GO992_04140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_04145 PF00005 ABC transporter GO992_04150 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GO992_04155 PF00156 Phosphoribosyl transferase domain GO992_04160 PF02674 Colicin V production protein GO992_04165 PF02403 Seryl-tRNA synthetase N-terminal domain GO992_04165 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO992_04170 PF12002 MgsA AAA+ ATPase C terminal GO992_04170 PF16193 AAA C-terminal domain GO992_04170 PF00004 ATPase family associated with various cellular activities (AAA) GO992_04175 PF03548 Outer membrane lipoprotein carrier protein LolA GO992_04180 PF01580 FtsK/SpoIIIE family GO992_04180 PF09397 Ftsk gamma domain GO992_04180 PF17854 FtsK alpha domain GO992_04180 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GO992_04185 PF01037 Lrp/AsnC ligand binding domain GO992_04200 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_04210 PF05433 Glycine zipper 2TM domain GO992_04215 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GO992_04220 PF04377 Arginine-tRNA-protein transferase, C terminus GO992_04220 PF04376 Arginine-tRNA-protein transferase, N terminus GO992_04225 PF01176 Translation initiation factor 1A / IF-1 GO992_04230 PF10431 C-terminal, D2-small domain, of ClpB protein GO992_04230 PF00004 ATPase family associated with various cellular activities (AAA) GO992_04230 PF02861 Clp amino terminal domain, pathogenicity island component GO992_04230 PF17871 AAA lid domain GO992_04230 PF07724 AAA domain (Cdc48 subfamily) GO992_04235 PF02617 ATP-dependent Clp protease adaptor protein ClpS GO992_04240 PF00313 'Cold-shock' DNA-binding domain GO992_04245 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO992_04245 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO992_04305 PF06505 Activator of aromatic catabolism GO992_04305 PF02830 V4R domain GO992_04305 PF00158 Sigma-54 interaction domain GO992_04305 PF02954 Bacterial regulatory protein, Fis family GO992_04360 PF00916 Sulfate permease family GO992_04360 PF01740 STAS domain GO992_04390 PF00892 EamA-like transporter family GO992_04395 PF02508 Rnf-Nqr subunit, membrane protein GO992_04400 PF04060 Putative Fe-S cluster GO992_04405 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit GO992_04405 PF10531 SLBB domain GO992_04405 PF13375 RnfC Barrel sandwich hybrid domain GO992_04405 PF12838 4Fe-4S dicluster domain GO992_04410 PF03116 NQR2, RnfD, RnfE family GO992_04415 PF04205 FMN-binding domain GO992_04420 PF02508 Rnf-Nqr subunit, membrane protein GO992_04425 PF10576 Iron-sulfur binding domain of endonuclease III GO992_04425 PF00730 HhH-GPD superfamily base excision DNA repair protein GO992_04425 PF00633 Helix-hairpin-helix motif GO992_04430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO992_04435 PF18393 MotY N-terminal domain GO992_04435 PF00691 OmpA family GO992_04440 PF12729 Four helix bundle sensory module for signal transduction GO992_04440 PF00672 HAMP domain GO992_04440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_04445 PF00929 Exonuclease GO992_04450 PF13726 Na+-H+ antiporter family GO992_04450 PF03553 Na+/H+ antiporter family GO992_04455 PF00872 Transposase, Mutator family GO992_04470 PF00271 Helicase conserved C-terminal domain GO992_04470 PF03880 DbpA RNA binding domain GO992_04470 PF00270 DEAD/DEAH box helicase GO992_04475 PF03061 Thioesterase superfamily GO992_04485 PF13183 4Fe-4S dicluster domain GO992_04485 PF01565 FAD binding domain GO992_04485 PF02913 FAD linked oxidases, C-terminal domain GO992_04495 PF03471 Transporter associated domain GO992_04495 PF03741 Integral membrane protein TerC family GO992_04500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GO992_04505 PF00962 Adenosine/AMP deaminase GO992_04510 PF13344 Haloacid dehalogenase-like hydrolase GO992_04515 PF00999 Sodium/hydrogen exchanger family GO992_04515 PF02254 TrkA-N domain GO992_04525 PF13537 Glutamine amidotransferase domain GO992_04525 PF00733 Asparagine synthase GO992_04530 PF03577 Peptidase family C69 GO992_04550 PF00043 Glutathione S-transferase, C-terminal domain GO992_04550 PF13417 Glutathione S-transferase, N-terminal domain GO992_04555 PF02798 Glutathione S-transferase, N-terminal domain GO992_04555 PF14497 Glutathione S-transferase, C-terminal domain GO992_04570 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO992_04580 PF00849 RNA pseudouridylate synthase GO992_04600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_04600 PF08447 PAS fold GO992_04610 PF01027 Inhibitor of apoptosis-promoting Bax1 GO992_04615 PF12805 FUSC-like inner membrane protein yccS GO992_04620 PF04358 DsrC like protein GO992_04625 PF05036 Sporulation related domain GO992_04630 PF08245 Mur ligase middle domain GO992_04630 PF02875 Mur ligase family, glutamate ligase domain GO992_04635 PF01039 Carboxyl transferase domain GO992_04635 PF17848 Acetyl-coA carboxylase zinc finger domain GO992_04640 PF01416 tRNA pseudouridine synthase GO992_04650 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO992_04650 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO992_04655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO992_04655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_04655 PF11890 Domain of unknown function (DUF3410) GO992_04660 PF01569 PAP2 superfamily GO992_04665 PF03180 NLPA lipoprotein GO992_04720 PF00082 Subtilase family GO992_04720 PF01483 Proprotein convertase P-domain GO992_04735 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GO992_04735 PF00391 PEP-utilising enzyme, mobile domain GO992_04735 PF02896 PEP-utilising enzyme, TIM barrel domain GO992_04740 PF03618 Kinase/pyrophosphorylase GO992_04750 PF00324 Amino acid permease GO992_04780 PF03239 Iron permease FTR1 family GO992_04785 PF01593 Flavin containing amine oxidoreductase GO992_04805 PF07690 Major Facilitator Superfamily GO992_04810 PF03600 Citrate transporter GO992_04820 PF00005 ABC transporter GO992_04840 PF02308 MgtC family GO992_04895 PF01625 Peptide methionine sulfoxide reductase GO992_04900 PF00583 Acetyltransferase (GNAT) family GO992_04900 PF00696 Amino acid kinase family GO992_04940 PF01906 Putative heavy-metal-binding GO992_04945 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_04950 PF05728 Uncharacterised protein family (UPF0227) GO992_04955 PF13592 Winged helix-turn helix GO992_04955 PF13358 DDE superfamily endonuclease GO992_04975 PF00816 H-NS histone family GO992_04980 PF01923 Cobalamin adenosyltransferase GO992_04985 PF12843 Putative quorum-sensing-regulated virulence factor GO992_04990 PF04055 Radical SAM superfamily GO992_04995 PF06508 Queuosine biosynthesis protein QueC GO992_05010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GO992_05015 PF18073 Rubredoxin metal binding domain GO992_05025 PF00216 Bacterial DNA-binding protein GO992_05030 PF00575 S1 RNA binding domain GO992_05035 PF02224 Cytidylate kinase GO992_05040 PF00925 GTP cyclohydrolase II GO992_05045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_05045 PF03466 LysR substrate binding domain GO992_05050 PF03466 LysR substrate binding domain GO992_05050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_05055 PF07690 Major Facilitator Superfamily GO992_05070 PF00881 Nitroreductase family GO992_05075 PF13188 PAS domain GO992_05075 PF03707 Bacterial signalling protein N terminal repeat GO992_05075 PF00990 Diguanylate cyclase, GGDEF domain GO992_05075 PF00563 EAL domain GO992_05080 PF13358 DDE superfamily endonuclease GO992_05080 PF13592 Winged helix-turn helix GO992_05090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_05090 PF03466 LysR substrate binding domain GO992_05105 PF01212 Beta-eliminating lyase GO992_05110 PF00106 short chain dehydrogenase GO992_05120 PF00248 Aldo/keto reductase family GO992_05125 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) GO992_05150 PF02601 Exonuclease VII, large subunit GO992_05150 PF13742 OB-fold nucleic acid binding domain GO992_05155 PF04055 Radical SAM superfamily GO992_05160 PF00672 HAMP domain GO992_05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_05165 PF00793 DAHP synthetase I family GO992_05170 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GO992_05175 PF00266 Aminotransferase class-V GO992_05180 PF00766 Electron transfer flavoprotein FAD-binding domain GO992_05180 PF01012 Electron transfer flavoprotein domain GO992_05185 PF01012 Electron transfer flavoprotein domain GO992_05200 PF01544 CorA-like Mg2+ transporter protein GO992_05205 PF11143 Protein of unknown function (DUF2919) GO992_05220 PF00593 TonB dependent receptor GO992_05220 PF07715 TonB-dependent Receptor Plug Domain GO992_05225 PF01032 FecCD transport family GO992_05230 PF01032 FecCD transport family GO992_05235 PF00005 ABC transporter GO992_05240 PF17837 4'-phosphopantetheinyl transferase N-terminal domain GO992_05240 PF01648 4'-phosphopantetheinyl transferase superfamily GO992_05245 PF01497 Periplasmic binding protein GO992_05250 PF00501 AMP-binding enzyme GO992_05250 PF13193 AMP-binding enzyme C-terminal domain GO992_05250 PF14765 Polyketide synthase dehydratase GO992_05250 PF00668 Condensation domain GO992_05250 PF16197 Ketoacyl-synthetase C-terminal extension GO992_05250 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_05250 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_05250 PF08659 KR domain GO992_05250 PF00550 Phosphopantetheine attachment site GO992_05255 PF00668 Condensation domain GO992_05255 PF13193 AMP-binding enzyme C-terminal domain GO992_05255 PF07993 Male sterility protein GO992_05255 PF00501 AMP-binding enzyme GO992_05255 PF00550 Phosphopantetheine attachment site GO992_05265 PF00975 Thioesterase domain GO992_05265 PF00501 AMP-binding enzyme GO992_05265 PF13193 AMP-binding enzyme C-terminal domain GO992_05265 PF00550 Phosphopantetheine attachment site GO992_05265 PF00668 Condensation domain GO992_05270 PF00550 Phosphopantetheine attachment site GO992_05270 PF00857 Isochorismatase family GO992_05275 PF00501 AMP-binding enzyme GO992_05275 PF13193 AMP-binding enzyme C-terminal domain GO992_05280 PF00425 chorismate binding enzyme GO992_05285 PF07273 Protein of unknown function (DUF1439) GO992_05300 PF00990 Diguanylate cyclase, GGDEF domain GO992_05300 PF03707 Bacterial signalling protein N terminal repeat GO992_05300 PF00563 EAL domain GO992_05315 PF17200 Single Cache domain 2 GO992_05315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_05315 PF00672 HAMP domain GO992_05320 PF00294 pfkB family carbohydrate kinase GO992_05325 PF01124 MAPEG family GO992_05330 PF00762 Ferrochelatase GO992_05335 PF05191 Adenylate kinase, active site lid GO992_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_05345 PF00183 Hsp90 protein GO992_05355 PF02634 FdhD/NarQ family GO992_05360 PF02954 Bacterial regulatory protein, Fis family GO992_05360 PF01590 GAF domain GO992_05360 PF00158 Sigma-54 interaction domain GO992_05370 PF13808 DDE_Tnp_1-associated GO992_05370 PF01609 Transposase DDE domain GO992_05390 PF00698 Acyl transferase domain GO992_05390 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_05390 PF16197 Ketoacyl-synthetase C-terminal extension GO992_05390 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_05390 PF00550 Phosphopantetheine attachment site GO992_05390 PF00668 Condensation domain GO992_05395 PF13808 DDE_Tnp_1-associated GO992_05395 PF01609 Transposase DDE domain GO992_05400 PF13193 AMP-binding enzyme C-terminal domain GO992_05400 PF00668 Condensation domain GO992_05400 PF16197 Ketoacyl-synthetase C-terminal extension GO992_05400 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_05400 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_05400 PF08659 KR domain GO992_05400 PF00550 Phosphopantetheine attachment site GO992_05400 PF14765 Polyketide synthase dehydratase GO992_05400 PF00501 AMP-binding enzyme GO992_05410 PF00501 AMP-binding enzyme GO992_05410 PF00550 Phosphopantetheine attachment site GO992_05410 PF00668 Condensation domain GO992_05410 PF00975 Thioesterase domain GO992_05410 PF13193 AMP-binding enzyme C-terminal domain GO992_05425 PF00884 Sulfatase GO992_05425 PF08019 Phosphoethanolamine transferase EptA/EptB GO992_05430 PF01709 Transcriptional regulator GO992_05435 PF01336 OB-fold nucleic acid binding domain GO992_05435 PF00152 tRNA synthetases class II (D, K and N) GO992_05435 PF02938 GAD domain GO992_05455 PF13649 Methyltransferase domain GO992_05460 PF08003 Protein of unknown function (DUF1698) GO992_05480 PF10417 C-terminal domain of 1-Cys peroxiredoxin GO992_05480 PF00578 AhpC/TSA family GO992_05485 PF01609 Transposase DDE domain GO992_05485 PF13808 DDE_Tnp_1-associated GO992_05490 PF13358 DDE superfamily endonuclease GO992_05490 PF13592 Winged helix-turn helix GO992_05495 PF04344 Chemotaxis phosphatase, CheZ GO992_05500 PF00072 Response regulator receiver domain GO992_05505 PF04542 Sigma-70 region 2 GO992_05505 PF04539 Sigma-70 region 3 GO992_05505 PF04545 Sigma-70, region 4 GO992_05510 PF10609 NUBPL iron-transfer P-loop NTPase GO992_05515 PF00448 SRP54-type protein, GTPase domain GO992_05520 PF00771 FHIPEP family GO992_05525 PF01312 FlhB HrpN YscU SpaS Family GO992_05530 PF01311 Bacterial export proteins, family 1 GO992_05535 PF01313 Bacterial export proteins, family 3 GO992_05540 PF00813 FliP family GO992_05545 PF04347 Flagellar biosynthesis protein, FliO GO992_05550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO992_05555 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO992_05555 PF02154 Flagellar motor switch protein FliM GO992_05585 PF01706 FliG C-terminal domain GO992_05585 PF14841 FliG middle domain GO992_05585 PF14842 FliG N-terminal domain GO992_05590 PF01514 Secretory protein of YscJ/FliF family GO992_05590 PF08345 Flagellar M-ring protein C-terminal GO992_05595 PF02049 Flagellar hook-basal body complex protein FliE GO992_05605 PF07969 Amidohydrolase family GO992_05620 PF02001 Protein of unknown function DUF134 GO992_05635 PF00072 Response regulator receiver domain GO992_05640 PF00919 Uncharacterized protein family UPF0004 GO992_05640 PF18693 TRAM domain GO992_05640 PF04055 Radical SAM superfamily GO992_05655 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GO992_05655 PF00989 PAS fold GO992_05655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_05655 PF17203 Single cache domain 3 GO992_05660 PF02685 Glucokinase GO992_05665 PF01418 Helix-turn-helix domain, rpiR family GO992_05665 PF01380 SIS domain GO992_05670 PF02887 Pyruvate kinase, alpha/beta domain GO992_05670 PF00224 Pyruvate kinase, barrel domain GO992_05680 PF00873 AcrB/AcrD/AcrF family GO992_05685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GO992_05685 PF02770 Acyl-CoA dehydrogenase, middle domain GO992_05685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GO992_05685 PF09317 Domain of unknown function (DUF1974) GO992_05690 PF00440 Bacterial regulatory proteins, tetR family GO992_05700 PF13808 DDE_Tnp_1-associated GO992_05700 PF01609 Transposase DDE domain GO992_05710 PF01609 Transposase DDE domain GO992_05710 PF13808 DDE_Tnp_1-associated GO992_05730 PF09190 DALR domain GO992_05730 PF01406 tRNA synthetases class I (C) catalytic domain GO992_05735 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GO992_05745 PF00149 Calcineurin-like phosphoesterase GO992_05750 PF04226 Transglycosylase associated protein GO992_05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_05765 PF03466 LysR substrate binding domain GO992_05785 PF01066 CDP-alcohol phosphatidyltransferase GO992_05790 PF08459 UvrC Helix-hairpin-helix N-terminal GO992_05790 PF02151 UvrB/uvrC motif GO992_05790 PF01541 GIY-YIG catalytic domain GO992_05795 PF00196 Bacterial regulatory proteins, luxR family GO992_05795 PF00072 Response regulator receiver domain GO992_05800 PF02348 Cytidylyltransferase GO992_05805 PF03966 Trm112p-like protein GO992_05810 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GO992_05815 PF00005 ABC transporter GO992_05815 PF00664 ABC transporter transmembrane region GO992_05820 PF00753 Metallo-beta-lactamase superfamily GO992_05820 PF03772 Competence protein GO992_05835 PF05872 Bacterial protein of unknown function (DUF853) GO992_05840 PF00155 Aminotransferase class I and II GO992_05855 PF13609 Gram-negative porin GO992_05860 PF06733 DEAD_2 GO992_05860 PF13307 Helicase C-terminal domain GO992_05870 PF00850 Histone deacetylase domain GO992_05875 PF01926 50S ribosome-binding GTPase GO992_05880 PF00245 Alkaline phosphatase GO992_05885 PF00245 Alkaline phosphatase GO992_05900 PF14760 Rnk N-terminus GO992_05900 PF01272 Transcription elongation factor, GreA/GreB, C-term GO992_05905 PF00072 Response regulator receiver domain GO992_05905 PF00196 Bacterial regulatory proteins, luxR family GO992_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_05910 PF07730 Histidine kinase GO992_05910 PF05231 MASE1 GO992_05915 PF07690 Major Facilitator Superfamily GO992_05920 PF00990 Diguanylate cyclase, GGDEF domain GO992_05920 PF08448 PAS fold GO992_05925 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_05930 PF00528 Binding-protein-dependent transport system inner membrane component GO992_05935 PF00005 ABC transporter GO992_05940 PF04116 Fatty acid hydroxylase superfamily GO992_05945 PF13520 Amino acid permease GO992_05960 PF00571 CBS domain GO992_05960 PF03471 Transporter associated domain GO992_05960 PF01595 Cyclin M transmembrane N-terminal domain GO992_05965 PF01895 PhoU domain GO992_05975 PF00528 Binding-protein-dependent transport system inner membrane component GO992_05980 PF00528 Binding-protein-dependent transport system inner membrane component GO992_05995 PF01274 Malate synthase GO992_06000 PF00463 Isocitrate lyase family GO992_06005 PF00308 Bacterial dnaA protein GO992_06020 PF00586 AIR synthase related protein, N-terminal domain GO992_06020 PF02769 AIR synthase related protein, C-terminal domain GO992_06025 PF00551 Formyl transferase GO992_06030 PF01784 NIF3 (NGG1p interacting factor 3) GO992_06035 PF00158 Sigma-54 interaction domain GO992_06035 PF02954 Bacterial regulatory protein, Fis family GO992_06040 PF00512 His Kinase A (phospho-acceptor) domain GO992_06040 PF00989 PAS fold GO992_06040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_06045 PF02954 Bacterial regulatory protein, Fis family GO992_06045 PF00072 Response regulator receiver domain GO992_06045 PF00158 Sigma-54 interaction domain GO992_06060 PF13089 Polyphosphate kinase N-terminal domain GO992_06060 PF17941 Polyphosphate kinase C-terminal domain 1 GO992_06060 PF13090 Polyphosphate kinase C-terminal domain 2 GO992_06060 PF02503 Polyphosphate kinase middle domain GO992_06065 PF02541 Ppx/GppA phosphatase family GO992_06070 PF00571 CBS domain GO992_06070 PF01769 Divalent cation transporter GO992_06070 PF03448 MgtE intracellular N domain GO992_06105 PF12850 Calcineurin-like phosphoesterase superfamily domain GO992_06110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_06120 PF00849 RNA pseudouridylate synthase GO992_06120 PF01479 S4 domain GO992_06125 PF01966 HD domain GO992_06125 PF11871 Domain of unknown function (DUF3391) GO992_06135 PF00892 EamA-like transporter family GO992_06165 PF00313 'Cold-shock' DNA-binding domain GO992_06170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO992_06170 PF02817 e3 binding domain GO992_06170 PF00364 Biotin-requiring enzyme GO992_06180 PF13358 DDE superfamily endonuclease GO992_06180 PF13592 Winged helix-turn helix GO992_06185 PF02780 Transketolase, C-terminal domain GO992_06185 PF02779 Transketolase, pyrimidine binding domain GO992_06190 PF00676 Dehydrogenase E1 component GO992_06195 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family GO992_06205 PF05472 DNA replication terminus site-binding protein (Ter protein) GO992_06210 PF04434 SWIM zinc finger GO992_06210 PF00176 SNF2 family N-terminal domain GO992_06210 PF00271 Helicase conserved C-terminal domain GO992_06215 PF04337 Protein of unknown function, DUF480 GO992_06225 PF02397 Bacterial sugar transferase GO992_06255 PF03466 LysR substrate binding domain GO992_06255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_06260 PF02447 GntP family permease GO992_06265 PF00291 Pyridoxal-phosphate dependent enzyme GO992_06275 PF00180 Isocitrate/isopropylmalate dehydrogenase GO992_06280 PF12833 Helix-turn-helix domain GO992_06285 PF01238 Phosphomannose isomerase type I GO992_06320 PF13808 DDE_Tnp_1-associated GO992_06320 PF01609 Transposase DDE domain GO992_06350 PF13533 Biotin-lipoyl like GO992_06355 PF00990 Diguanylate cyclase, GGDEF domain GO992_06355 PF05230 MASE2 domain GO992_06360 PF01734 Patatin-like phospholipase GO992_06365 PF00209 Sodium:neurotransmitter symporter family GO992_06380 PF00691 OmpA family GO992_06380 PF01389 OmpA-like transmembrane domain GO992_06385 PF00691 OmpA family GO992_06385 PF01389 OmpA-like transmembrane domain GO992_06390 PF00691 OmpA family GO992_06390 PF01389 OmpA-like transmembrane domain GO992_06395 PF00390 Malic enzyme, N-terminal domain GO992_06395 PF03949 Malic enzyme, NAD binding domain GO992_06400 PF12833 Helix-turn-helix domain GO992_06405 PF01554 MatE GO992_06410 PF10692 Protein of unknown function (DUF2498) GO992_06415 PF00990 Diguanylate cyclase, GGDEF domain GO992_06415 PF00072 Response regulator receiver domain GO992_06420 PF00860 Permease family GO992_06430 PF01235 Sodium:alanine symporter family GO992_06435 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO992_06435 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GO992_06440 PF01699 Sodium/calcium exchanger protein GO992_06445 PF08534 Redoxin GO992_06445 PF00462 Glutaredoxin GO992_06455 PF00293 NUDIX domain GO992_06475 PF00005 ABC transporter GO992_06480 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_06480 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO992_06485 PF03932 CutC family GO992_06490 PF00480 ROK family GO992_06500 PF01435 Peptidase family M48 GO992_06505 PF12849 PBP superfamily domain GO992_06510 PF00989 PAS fold GO992_06510 PF00512 His Kinase A (phospho-acceptor) domain GO992_06510 PF11808 Phosphate regulon sensor protein PhoR GO992_06510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_06515 PF00072 Response regulator receiver domain GO992_06515 PF00486 Transcriptional regulatory protein, C terminal GO992_06520 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO992_06525 PF00990 Diguanylate cyclase, GGDEF domain GO992_06525 PF07694 5TMR of 5TMR-LYT GO992_06530 PF00158 Sigma-54 interaction domain GO992_06530 PF01590 GAF domain GO992_06530 PF02954 Bacterial regulatory protein, Fis family GO992_06535 PF00171 Aldehyde dehydrogenase family GO992_06540 PF01361 Tautomerase enzyme GO992_06545 PF12697 Alpha/beta hydrolase family GO992_06555 PF03466 LysR substrate binding domain GO992_06555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_06565 PF00892 EamA-like transporter family GO992_06575 PF00248 Aldo/keto reductase family GO992_06585 PF00072 Response regulator receiver domain GO992_06585 PF12431 Transcriptional regulator GO992_06590 PF00989 PAS fold GO992_06590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_06590 PF17203 Single cache domain 3 GO992_06590 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GO992_06595 PF03949 Malic enzyme, NAD binding domain GO992_06595 PF00390 Malic enzyme, N-terminal domain GO992_06645 PF10282 Lactonase, 7-bladed beta-propeller GO992_06655 PF12729 Four helix bundle sensory module for signal transduction GO992_06655 PF00672 HAMP domain GO992_06655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_06660 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_06665 PF00860 Permease family GO992_06670 PF00390 Malic enzyme, N-terminal domain GO992_06670 PF03949 Malic enzyme, NAD binding domain GO992_06685 PF13247 4Fe-4S dicluster domain GO992_06690 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GO992_06690 PF01568 Molydopterin dinucleotide binding domain GO992_06690 PF00384 Molybdopterin oxidoreductase GO992_06690 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GO992_06690 PF12838 4Fe-4S dicluster domain GO992_06735 PF01609 Transposase DDE domain GO992_06735 PF13808 DDE_Tnp_1-associated GO992_06750 PF02719 Polysaccharide biosynthesis protein GO992_06755 PF00953 Glycosyl transferase family 4 GO992_06760 PF01370 NAD dependent epimerase/dehydratase family GO992_06795 PF02080 TrkA-C domain GO992_06795 PF03600 Citrate transporter GO992_06815 PF02350 UDP-N-acetylglucosamine 2-epimerase GO992_06830 PF00005 ABC transporter GO992_06840 PF00263 Bacterial type II and III secretion system protein GO992_06840 PF03958 Bacterial type II/III secretion system short domain GO992_06875 PF08334 Type II secretion system (T2SS), protein G GO992_06875 PF07963 Prokaryotic N-terminal methylation motif GO992_06880 PF00482 Type II secretion system (T2SS), protein F GO992_06885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GO992_06885 PF00437 Type II/IV secretion system protein GO992_06895 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase GO992_06900 PF00483 Nucleotidyl transferase GO992_06905 PF04321 RmlD substrate binding domain GO992_06910 PF16363 GDP-mannose 4,6 dehydratase GO992_06915 PF02321 Outer membrane efflux protein GO992_06925 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_06925 PF00529 HlyD membrane-fusion protein of T1SS GO992_06930 PF00440 Bacterial regulatory proteins, tetR family GO992_06930 PF08361 MAATS-type transcriptional repressor, C-terminal region GO992_06950 PF00849 RNA pseudouridylate synthase GO992_06950 PF01479 S4 domain GO992_06955 PF04079 Segregation and condensation complex subunit ScpB GO992_06960 PF02616 Segregation and condensation protein ScpA GO992_06965 PF01300 Telomere recombination GO992_06970 PF02811 PHP domain GO992_06975 PF04715 Anthranilate synthase component I, N terminal region GO992_06975 PF00425 chorismate binding enzyme GO992_06980 PF00591 Glycosyl transferase family, a/b domain GO992_06980 PF00117 Glutamine amidotransferase class-I GO992_06980 PF02885 Glycosyl transferase family, helical bundle domain GO992_06985 PF00591 Glycosyl transferase family, a/b domain GO992_06985 PF02885 Glycosyl transferase family, helical bundle domain GO992_06990 PF00218 Indole-3-glycerol phosphate synthase GO992_06990 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GO992_06995 PF00291 Pyridoxal-phosphate dependent enzyme GO992_07000 PF00290 Tryptophan synthase alpha chain GO992_07020 PF17969 L,D-transpeptidase C-terminal domain GO992_07020 PF01476 LysM domain GO992_07020 PF03734 L,D-transpeptidase catalytic domain GO992_07030 PF01575 MaoC like domain GO992_07035 PF05971 RNA methyltransferase GO992_07040 PF00877 NlpC/P60 family GO992_07045 PF01648 4'-phosphopantetheinyl transferase superfamily GO992_07060 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GO992_07065 PF01842 ACT domain GO992_07065 PF00551 Formyl transferase GO992_07075 PF13091 PLD-like domain GO992_07075 PF13396 Phospholipase_D-nuclease N-terminal GO992_07090 PF01551 Peptidase family M23 GO992_07095 PF00128 Alpha amylase, catalytic domain GO992_07100 PF10145 Phage-related minor tail protein GO992_07100 PF01551 Peptidase family M23 GO992_07100 PF01464 Transglycosylase SLT domain GO992_07105 PF00230 Major intrinsic protein GO992_07110 PF02075 Crossover junction endodeoxyribonuclease RuvC GO992_07115 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GO992_07140 PF07690 Major Facilitator Superfamily GO992_07145 PF01040 UbiA prenyltransferase family GO992_07155 PF00115 Cytochrome C and Quinol oxidase polypeptide I GO992_07160 PF06481 COX Aromatic Rich Motif GO992_07160 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GO992_07170 PF00034 Cytochrome c GO992_07170 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GO992_07180 PF01156 Inosine-uridine preferring nucleoside hydrolase GO992_07195 PF00127 Copper binding proteins, plastocyanin/azurin family GO992_07200 PF02424 ApbE family GO992_07205 PF00486 Transcriptional regulatory protein, C terminal GO992_07205 PF00072 Response regulator receiver domain GO992_07225 PF03372 Endonuclease/Exonuclease/phosphatase family GO992_07230 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_07235 PF00873 AcrB/AcrD/AcrF family GO992_07250 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_07250 PF00529 HlyD membrane-fusion protein of T1SS GO992_07255 PF00873 AcrB/AcrD/AcrF family GO992_07265 PF03099 Biotin/lipoate A/B protein ligase family GO992_07265 PF10437 Bacterial lipoate protein ligase C-terminus GO992_07270 PF00563 EAL domain GO992_07270 PF00990 Diguanylate cyclase, GGDEF domain GO992_07270 PF03707 Bacterial signalling protein N terminal repeat GO992_07275 PF00873 AcrB/AcrD/AcrF family GO992_07290 PF04143 Sulphur transport GO992_07310 PF02308 MgtC family GO992_07315 PF13407 Periplasmic binding protein domain GO992_07315 PF00356 Bacterial regulatory proteins, lacI family GO992_07320 PF00251 Glycosyl hydrolases family 32 N-terminal domain GO992_07320 PF08244 Glycosyl hydrolases family 32 C terminal GO992_07325 PF02378 Phosphotransferase system, EIIC GO992_07325 PF00367 phosphotransferase system, EIIB GO992_07330 PF00294 pfkB family carbohydrate kinase GO992_07335 PF11471 Maltoporin periplasmic N-terminal extension GO992_07335 PF02264 LamB porin GO992_07340 PF00226 DnaJ domain GO992_07340 PF00684 DnaJ central domain GO992_07340 PF01556 DnaJ C terminal domain GO992_07345 PF00012 Hsp70 protein GO992_07350 PF01025 GrpE GO992_07355 PF01513 ATP-NAD kinase GO992_07360 PF02463 RecF/RecN/SMC N terminal domain GO992_07365 PF02833 DHHA2 domain GO992_07365 PF01368 DHH family GO992_07375 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_07380 PF12704 MacB-like periplasmic core domain GO992_07380 PF00005 ABC transporter GO992_07380 PF02687 FtsX-like permease family GO992_07385 PF02321 Outer membrane efflux protein GO992_07390 PF04954 Siderophore-interacting protein GO992_07390 PF08021 Siderophore-interacting FAD-binding domain GO992_07395 PF00793 DAHP synthetase I family GO992_07405 PF00872 Transposase, Mutator family GO992_07410 PF00816 H-NS histone family GO992_07445 PF07883 Cupin domain GO992_07445 PF12833 Helix-turn-helix domain GO992_07460 PF07883 Cupin domain GO992_07460 PF01381 Helix-turn-helix GO992_07470 PF00202 Aminotransferase class-III GO992_07475 PF00324 Amino acid permease GO992_07480 PF00324 Amino acid permease GO992_07485 PF02690 Na+/Pi-cotransporter GO992_07490 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_07490 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO992_07495 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GO992_07510 PF01048 Phosphorylase superfamily GO992_07530 PF13592 Winged helix-turn helix GO992_07530 PF13358 DDE superfamily endonuclease GO992_07535 PF14821 Threonine synthase N terminus GO992_07535 PF00291 Pyridoxal-phosphate dependent enzyme GO992_07540 PF08544 GHMP kinases C terminal GO992_07540 PF00288 GHMP kinases N terminal domain GO992_07545 PF00742 Homoserine dehydrogenase GO992_07545 PF13840 ACT domain GO992_07545 PF00696 Amino acid kinase family GO992_07545 PF03447 Homoserine dehydrogenase, NAD binding domain GO992_07545 PF01842 ACT domain GO992_07555 PF00588 SpoU rRNA Methylase family GO992_07560 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) GO992_07575 PF03737 Aldolase/RraA GO992_07585 PF00072 Response regulator receiver domain GO992_07585 PF00486 Transcriptional regulatory protein, C terminal GO992_07600 PF00664 ABC transporter transmembrane region GO992_07600 PF00005 ABC transporter GO992_07605 PF00664 ABC transporter transmembrane region GO992_07605 PF00005 ABC transporter GO992_07625 PF18389 TrmO C-terminal domain GO992_07625 PF01980 tRNA-methyltransferase O GO992_07630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO992_07630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO992_07645 PF00291 Pyridoxal-phosphate dependent enzyme GO992_07650 PF00381 PTS HPr component phosphorylation site GO992_07655 PF05524 PEP-utilising enzyme, N-terminal GO992_07655 PF02896 PEP-utilising enzyme, TIM barrel domain GO992_07655 PF00391 PEP-utilising enzyme, mobile domain GO992_07660 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GO992_07665 PF08448 PAS fold GO992_07665 PF00990 Diguanylate cyclase, GGDEF domain GO992_07675 PF01292 Prokaryotic cytochrome b561 GO992_07685 PF13476 AAA domain GO992_07690 PF00149 Calcineurin-like phosphoesterase GO992_07690 PF12320 Type 5 capsule protein repressor C-terminal domain GO992_07700 PF04381 Putative exonuclease, RdgC GO992_07710 PF00999 Sodium/hydrogen exchanger family GO992_07710 PF02254 TrkA-N domain GO992_07715 PF00999 Sodium/hydrogen exchanger family GO992_07715 PF02254 TrkA-N domain GO992_07720 PF04151 Bacterial pre-peptidase C-terminal domain GO992_07720 PF04389 Peptidase family M28 GO992_07730 PF00224 Pyruvate kinase, barrel domain GO992_07730 PF02887 Pyruvate kinase, alpha/beta domain GO992_07735 PF12794 Mechanosensitive ion channel inner membrane domain 1 GO992_07735 PF00924 Mechanosensitive ion channel GO992_07735 PF12795 Mechanosensitive ion channel porin domain GO992_07740 PF00589 Phage integrase family GO992_07740 PF13356 Arm DNA-binding domain GO992_07760 PF01047 MarR family GO992_07765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_07765 PF00529 HlyD membrane-fusion protein of T1SS GO992_07785 PF01679 Proteolipid membrane potential modulator GO992_07800 PF13597 Anaerobic ribonucleoside-triphosphate reductase GO992_07800 PF03477 ATP cone domain GO992_07810 PF12826 Helix-hairpin-helix motif GO992_07810 PF03120 NAD-dependent DNA ligase OB-fold domain GO992_07810 PF00533 BRCA1 C Terminus (BRCT) domain GO992_07810 PF01653 NAD-dependent DNA ligase adenylation domain GO992_07810 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GO992_07815 PF04354 ZipA, C-terminal FtsZ-binding domain GO992_07820 PF02463 RecF/RecN/SMC N terminal domain GO992_07820 PF06470 SMC proteins Flexible Hinge Domain GO992_07830 PF03458 UPF0126 domain GO992_07840 PF05951 Bacterial protein of unknown function (DUF882) GO992_07845 PF03734 L,D-transpeptidase catalytic domain GO992_07845 PF01471 Putative peptidoglycan binding domain GO992_07855 PF13808 DDE_Tnp_1-associated GO992_07855 PF01609 Transposase DDE domain GO992_07865 PF00535 Glycosyl transferase family 2 GO992_07880 PF00579 tRNA synthetases class I (W and Y) GO992_07885 PF08525 Opacity-associated protein A N-terminal motif GO992_07885 PF01476 LysM domain GO992_07885 PF01551 Peptidase family M23 GO992_07890 PF03702 Anhydro-N-acetylmuramic acid kinase GO992_07895 PF13808 DDE_Tnp_1-associated GO992_07895 PF01609 Transposase DDE domain GO992_07925 PF00456 Transketolase, thiamine diphosphate binding domain GO992_07925 PF02779 Transketolase, pyrimidine binding domain GO992_07925 PF02780 Transketolase, C-terminal domain GO992_07930 PF00438 S-adenosylmethionine synthetase, N-terminal domain GO992_07930 PF02772 S-adenosylmethionine synthetase, central domain GO992_07930 PF02773 S-adenosylmethionine synthetase, C-terminal domain GO992_07935 PF17283 SprT-like zinc ribbon domain GO992_07935 PF10263 SprT-like family GO992_07940 PF04231 Endonuclease I GO992_07945 PF04452 RNA methyltransferase GO992_07950 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GO992_07950 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GO992_07955 PF00672 HAMP domain GO992_07955 PF12729 Four helix bundle sensory module for signal transduction GO992_07955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_07965 PF02622 Uncharacterized ACR, COG1678 GO992_07970 PF03652 Holliday junction resolvase GO992_07975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_07975 PF03466 LysR substrate binding domain GO992_07980 PF07690 Major Facilitator Superfamily GO992_08000 PF07726 ATPase family associated with various cellular activities (AAA) GO992_08000 PF17863 AAA lid domain GO992_08015 PF01235 Sodium:alanine symporter family GO992_08020 PF13808 DDE_Tnp_1-associated GO992_08020 PF01609 Transposase DDE domain GO992_08025 PF00923 Transaldolase/Fructose-6-phosphate aldolase GO992_08040 PF03167 Uracil DNA glycosylase superfamily GO992_08050 PF13592 Winged helix-turn helix GO992_08050 PF13358 DDE superfamily endonuclease GO992_08055 PF01228 Glycine radical GO992_08060 PF00375 Sodium:dicarboxylate symporter family GO992_08065 PF00793 DAHP synthetase I family GO992_08070 PF13369 Transglutaminase-like superfamily GO992_08080 PF17827 PrmC N-terminal domain GO992_08080 PF13847 Methyltransferase domain GO992_08085 PF03462 PCRF domain GO992_08085 PF00472 RF-1 domain GO992_08090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GO992_08090 PF01488 Shikimate / quinate 5-dehydrogenase GO992_08090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GO992_08095 PF03550 Outer membrane lipoprotein LolB GO992_08100 PF08544 GHMP kinases C terminal GO992_08100 PF00288 GHMP kinases N terminal domain GO992_08110 PF14572 Phosphoribosyl synthetase-associated domain GO992_08110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GO992_08115 PF02872 5'-nucleotidase, C-terminal domain GO992_08115 PF00149 Calcineurin-like phosphoesterase GO992_08120 PF01195 Peptidyl-tRNA hydrolase GO992_08125 PF01926 50S ribosome-binding GTPase GO992_08125 PF06071 Protein of unknown function (DUF933) GO992_08170 PF02080 TrkA-C domain GO992_08170 PF03600 Citrate transporter GO992_08175 PF04973 Nicotinamide mononucleotide transporter GO992_08180 PF01048 Phosphorylase superfamily GO992_08195 PF07859 alpha/beta hydrolase fold GO992_08215 PF00535 Glycosyl transferase family 2 GO992_08230 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase GO992_08235 PF00892 EamA-like transporter family GO992_08245 PF00485 Phosphoribulokinase / Uridine kinase family GO992_08260 PF02566 OsmC-like protein GO992_08265 PF13545 Crp-like helix-turn-helix domain GO992_08265 PF00027 Cyclic nucleotide-binding domain GO992_08270 PF08241 Methyltransferase domain GO992_08275 PF18416 N-acetylglucosamine binding protein domain 2 GO992_08275 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading GO992_08280 PF17945 Beta/Gamma crystallin GO992_08280 PF12561 ToxR activated gene A lipoprotein domain GO992_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_08290 PF00512 His Kinase A (phospho-acceptor) domain GO992_08290 PF00989 PAS fold GO992_08300 PF13443 Cro/C1-type HTH DNA-binding domain GO992_08310 PF12832 MFS_1 like family GO992_08315 PF07715 TonB-dependent Receptor Plug Domain GO992_08315 PF00593 TonB dependent receptor GO992_08335 PF01243 Pyridoxamine 5'-phosphate oxidase GO992_08340 PF06228 Haem utilisation ChuX/HutX GO992_08350 PF01032 FecCD transport family GO992_08355 PF00005 ABC transporter GO992_08365 PF01370 NAD dependent epimerase/dehydratase family GO992_08375 PF00005 ABC transporter GO992_08375 PF12848 ABC transporter GO992_08385 PF00860 Permease family GO992_08390 PF00226 DnaJ domain GO992_08390 PF05099 Tellurite resistance protein TerB GO992_08395 PF00483 Nucleotidyl transferase GO992_08400 PF01636 Phosphotransferase enzyme family GO992_08405 PF04453 LPS transport system D GO992_08405 PF03968 OstA-like protein GO992_08410 PF09312 SurA N-terminal domain GO992_08410 PF00639 PPIC-type PPIASE domain GO992_08415 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GO992_08420 PF00398 Ribosomal RNA adenine dimethylase GO992_08425 PF04379 ApaG domain GO992_08430 PF00149 Calcineurin-like phosphoesterase GO992_08445 PF00296 Luciferase-like monooxygenase GO992_08465 PF00501 AMP-binding enzyme GO992_08465 PF13193 AMP-binding enzyme C-terminal domain GO992_08475 PF01018 GTP1/OBG GO992_08475 PF01926 50S ribosome-binding GTPase GO992_08480 PF01016 Ribosomal L27 protein GO992_08485 PF00829 Ribosomal prokaryotic L21 protein GO992_08490 PF00348 Polyprenyl synthetase GO992_08495 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) GO992_08500 PF01145 SPFH domain / Band 7 family GO992_08505 PF12221 Bacterial membrane protein N terminal GO992_08505 PF01145 SPFH domain / Band 7 family GO992_08510 PF01926 50S ribosome-binding GTPase GO992_08510 PF13167 GTP-binding GTPase N-terminal GO992_08510 PF16360 GTP-binding GTPase Middle Region GO992_08515 PF17209 Hfq protein GO992_08525 PF08676 MutL C terminal dimerisation domain GO992_08525 PF01119 DNA mismatch repair protein, C-terminal domain GO992_08530 PF01520 N-acetylmuramoyl-L-alanine amidase GO992_08535 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GO992_08540 PF01256 Carbohydrate kinase GO992_08540 PF03853 YjeF-related protein N-terminus GO992_08545 PF08331 Domain of unknown function (DUF1730) GO992_08550 PF00480 ROK family GO992_08560 PF09383 NIL domain GO992_08560 PF00005 ABC transporter GO992_08565 PF00528 Binding-protein-dependent transport system inner membrane component GO992_08570 PF03180 NLPA lipoprotein GO992_08575 PF02357 Transcription termination factor nusG GO992_08585 PF03707 Bacterial signalling protein N terminal repeat GO992_08585 PF00563 EAL domain GO992_08585 PF00990 Diguanylate cyclase, GGDEF domain GO992_08600 PF01966 HD domain GO992_08605 PF01627 Hpt domain GO992_08605 PF18415 Histidine kinase receptor ArcB trans-membrane domain GO992_08605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_08605 PF00989 PAS fold GO992_08605 PF00512 His Kinase A (phospho-acceptor) domain GO992_08605 PF00072 Response regulator receiver domain GO992_08630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_08630 PF03466 LysR substrate binding domain GO992_08640 PF01259 SAICAR synthetase GO992_08645 PF06804 NlpB/DapX lipoprotein GO992_08650 PF00701 Dihydrodipicolinate synthetase family GO992_08655 PF01842 ACT domain GO992_08660 PF00578 AhpC/TSA family GO992_08665 PF03887 YfbU domain GO992_08670 PF04217 Protein of unknown function, DUF412 GO992_08675 PF00871 Acetokinase family GO992_08680 PF07085 DRTGG domain GO992_08680 PF01515 Phosphate acetyl/butaryl transferase GO992_08685 PF10369 Small subunit of acetolactate synthase GO992_08690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO992_08690 PF00205 Thiamine pyrophosphate enzyme, central domain GO992_08690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO992_08705 PF01569 PAP2 superfamily GO992_08715 PF08502 LeuA allosteric (dimerisation) domain GO992_08715 PF00682 HMGL-like GO992_08720 PF00180 Isocitrate/isopropylmalate dehydrogenase GO992_08725 PF00330 Aconitase family (aconitate hydratase) GO992_08730 PF00694 Aconitase C-terminal domain GO992_08750 PF00528 Binding-protein-dependent transport system inner membrane component GO992_08755 PF00005 ABC transporter GO992_08760 PF02562 PhoH-like protein GO992_08760 PF13638 PIN domain GO992_08770 PF00317 Ribonucleotide reductase, all-alpha domain GO992_08770 PF08343 Ribonucleotide reductase N-terminal GO992_08770 PF02867 Ribonucleotide reductase, barrel domain GO992_08800 PF01521 Iron-sulphur cluster biosynthesis GO992_08810 PF00654 Voltage gated chloride channel GO992_08815 PF00202 Aminotransferase class-III GO992_08830 PF01569 PAP2 superfamily GO992_08840 PF11849 Domain of unknown function (DUF3369) GO992_08845 PF03466 LysR substrate binding domain GO992_08845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_08850 PF00893 Small Multidrug Resistance protein GO992_08855 PF00893 Small Multidrug Resistance protein GO992_08860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO992_08865 PF00905 Penicillin binding protein transpeptidase domain GO992_08865 PF14814 Bifunctional transglycosylase second domain GO992_08865 PF00912 Transglycosylase GO992_08870 PF08482 ATP-dependent helicase C-terminal GO992_08870 PF00271 Helicase conserved C-terminal domain GO992_08870 PF04408 Helicase associated domain (HA2) GO992_08870 PF00270 DEAD/DEAH box helicase GO992_08880 PF03749 Sugar fermentation stimulation protein RE domain GO992_08880 PF17746 SfsA N-terminal OB domain GO992_08885 PF01258 Prokaryotic dksA/traR C4-type zinc finger GO992_08890 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO992_08895 PF01743 Poly A polymerase head domain GO992_08895 PF12626 Polymerase A arginine-rich C-terminus GO992_08895 PF12627 Probable RNA and SrmB- binding site of polymerase A GO992_08900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GO992_08905 PF02548 Ketopantoate hydroxymethyltransferase GO992_08910 PF02569 Pantoate-beta-alanine ligase GO992_08920 PF01061 ABC-2 type transporter GO992_08925 PF00005 ABC transporter GO992_08930 PF00156 Phosphoribosyl transferase domain GO992_08935 PF00440 Bacterial regulatory proteins, tetR family GO992_08940 PF02441 Flavoprotein GO992_08945 PF02875 Mur ligase family, glutamate ligase domain GO992_08945 PF08245 Mur ligase middle domain GO992_08945 PF01225 Mur ligase family, catalytic domain GO992_08950 PF00719 Inorganic pyrophosphatase GO992_08955 PF01208 Uroporphyrinogen decarboxylase (URO-D) GO992_08960 PF09297 NADH pyrophosphatase zinc ribbon domain GO992_08960 PF00293 NUDIX domain GO992_08965 PF01619 Proline dehydrogenase GO992_08965 PF18327 Proline utilization A proline dehydrogenase N-terminal domain GO992_08965 PF14850 DNA-binding domain of Proline dehydrogenase GO992_08965 PF00171 Aldehyde dehydrogenase family GO992_08970 PF08239 Bacterial SH3 domain GO992_08975 PF07885 Ion channel GO992_08975 PF00027 Cyclic nucleotide-binding domain GO992_08985 PF01641 SelR domain GO992_08990 PF00128 Alpha amylase, catalytic domain GO992_08990 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GO992_08995 PF02806 Alpha amylase, C-terminal all-beta domain GO992_08995 PF00128 Alpha amylase, catalytic domain GO992_08995 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GO992_09000 PF02446 4-alpha-glucanotransferase GO992_09005 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GO992_09005 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GO992_09010 PF01263 Aldose 1-epimerase GO992_09015 PF02445 Quinolinate synthetase A protein GO992_09020 PF00672 HAMP domain GO992_09020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_09085 PF13174 Tetratricopeptide repeat GO992_09085 PF16331 TolA binding protein trimerisation GO992_09090 PF00691 OmpA family GO992_09095 PF04052 TolB amino-terminal domain GO992_09095 PF07676 WD40-like Beta Propeller Repeat GO992_09105 PF02472 Biopolymer transport protein ExbD/TolR GO992_09110 PF01618 MotA/TolQ/ExbB proton channel family GO992_09115 PF03061 Thioesterase superfamily GO992_09120 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) GO992_09125 PF08173 Membrane bound YbgT-like protein GO992_09130 PF02322 Cytochrome bd terminal oxidase subunit II GO992_09135 PF01654 Cytochrome bd terminal oxidase subunit I GO992_09140 PF17864 RuvB AAA lid domain GO992_09140 PF05491 RuvB C-terminal winged helix domain GO992_09140 PF05496 Holliday junction DNA helicase RuvB P-loop domain GO992_09145 PF01330 RuvA N terminal domain GO992_09145 PF07499 RuvA, C-terminal domain GO992_09150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_09150 PF00672 HAMP domain GO992_09155 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO992_09155 PF04073 Aminoacyl-tRNA editing domain GO992_09155 PF03129 Anticodon binding domain GO992_09165 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GO992_09170 PF00583 Acetyltransferase (GNAT) family GO992_09175 PF16658 Class II release factor RF3, C-terminal domain GO992_09175 PF03144 Elongation factor Tu domain 2 GO992_09175 PF00009 Elongation factor Tu GTP binding domain GO992_09180 PF00990 Diguanylate cyclase, GGDEF domain GO992_09180 PF00072 Response regulator receiver domain GO992_09190 PF01037 Lrp/AsnC ligand binding domain GO992_09200 PF05762 VWA domain containing CoxE-like protein GO992_09205 PF17868 AAA lid domain GO992_09205 PF12592 Protein of unknown function (DUF3763) GO992_09205 PF07728 AAA domain (dynein-related subfamily) GO992_09215 PF00583 Acetyltransferase (GNAT) family GO992_09215 PF13673 Acetyltransferase (GNAT) domain GO992_09225 PF00501 AMP-binding enzyme GO992_09235 PF04262 Glutamate-cysteine ligase GO992_09240 PF00675 Insulinase (Peptidase family M16) GO992_09240 PF05193 Peptidase M16 inactive domain GO992_09245 PF09335 SNARE associated Golgi protein GO992_09250 PF00107 Zinc-binding dehydrogenase GO992_09250 PF08240 Alcohol dehydrogenase GroES-like domain GO992_09275 PF00175 Oxidoreductase NAD-binding domain GO992_09275 PF00970 Oxidoreductase FAD-binding domain GO992_09280 PF03948 Ribosomal protein L9, C-terminal domain GO992_09280 PF01281 Ribosomal protein L9, N-terminal domain GO992_09285 PF01084 Ribosomal protein S18 GO992_09290 PF01250 Ribosomal protein S6 GO992_09295 PF01566 Natural resistance-associated macrophage protein GO992_09300 PF01411 tRNA synthetases class II (A) GO992_09300 PF02272 DHHA1 domain GO992_09300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO992_09315 PF13673 Acetyltransferase (GNAT) domain GO992_09325 PF00588 SpoU rRNA Methylase family GO992_09325 PF08032 RNA 2'-O ribose methyltransferase substrate binding GO992_09330 PF08461 Ribonuclease R winged-helix domain GO992_09330 PF00773 RNB domain GO992_09330 PF00575 S1 RNA binding domain GO992_09330 PF17876 Cold shock domain GO992_09330 PF08206 Ribonuclease B OB domain GO992_09335 PF00990 Diguanylate cyclase, GGDEF domain GO992_09340 PF02664 S-Ribosylhomocysteinase (LuxS) GO992_09350 PF00543 Nitrogen regulatory protein P-II GO992_09355 PF02540 NAD synthase GO992_09355 PF00795 Carbon-nitrogen hydrolase GO992_09370 PF05567 Neisseria PilC beta-propeller domain GO992_09390 PF14245 Type IV pilin PilA GO992_09390 PF07963 Prokaryotic N-terminal methylation motif GO992_09395 PF02401 LytB protein GO992_09400 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_09405 PF01252 Signal peptidase (SPase) II GO992_09410 PF06827 Zinc finger found in FPG and IleRS GO992_09410 PF00133 tRNA synthetases class I (I, L, M and V) GO992_09410 PF08264 Anticodon-binding domain of tRNA GO992_09415 PF06574 FAD synthetase GO992_09415 PF01687 Riboflavin kinase GO992_09420 PF03023 Lipid II flippase MurJ GO992_09425 PF01649 Ribosomal protein S20 GO992_09430 PF01022 Bacterial regulatory protein, arsR family GO992_09435 PF03466 LysR substrate binding domain GO992_09435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_09445 PF06965 Na+/H+ antiporter 1 GO992_09450 PF00303 Thymidylate synthase GO992_09455 PF01790 Prolipoprotein diacylglyceryl transferase GO992_09475 PF00293 NUDIX domain GO992_09480 PF02976 DNA mismatch repair enzyme MutH GO992_09490 PF01245 Ribosomal protein L19 GO992_09495 PF01746 tRNA (Guanine-1)-methyltransferase GO992_09500 PF01782 RimM N-terminal domain GO992_09500 PF05239 PRC-barrel domain GO992_09505 PF00886 Ribosomal protein S16 GO992_09510 PF00448 SRP54-type protein, GTPase domain GO992_09510 PF02881 SRP54-type protein, helical bundle domain GO992_09510 PF02978 Signal peptide binding domain GO992_09515 PF01578 Cytochrome C assembly protein GO992_09520 PF00571 CBS domain GO992_09520 PF01595 Cyclin M transmembrane N-terminal domain GO992_09520 PF03471 Transporter associated domain GO992_09525 PF02082 Transcriptional regulator GO992_09530 PF00175 Oxidoreductase NAD-binding domain GO992_09530 PF00042 Globin GO992_09530 PF00970 Oxidoreductase FAD-binding domain GO992_09535 PF08238 Sel1 repeat GO992_09540 PF00056 lactate/malate dehydrogenase, NAD binding domain GO992_09540 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GO992_09545 PF00528 Binding-protein-dependent transport system inner membrane component GO992_09550 PF00528 Binding-protein-dependent transport system inner membrane component GO992_09555 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_09560 PF00005 ABC transporter GO992_09565 PF01316 Arginine repressor, DNA binding domain GO992_09565 PF02863 Arginine repressor, C-terminal domain GO992_09570 PF04261 Dyp-type peroxidase family GO992_09575 PF08402 TOBE domain GO992_09575 PF00005 ABC transporter GO992_09585 PF13416 Bacterial extracellular solute-binding protein GO992_09590 PF00543 Nitrogen regulatory protein P-II GO992_09605 PF00909 Ammonium Transporter Family GO992_09610 PF05958 tRNA (Uracil-5-)-methyltransferase GO992_09610 PF01938 TRAM domain GO992_09615 PF00583 Acetyltransferase (GNAT) family GO992_09625 PF01026 TatD related DNase GO992_09640 PF01791 DeoC/LacD family aldolase GO992_09645 PF02885 Glycosyl transferase family, helical bundle domain GO992_09645 PF00591 Glycosyl transferase family, a/b domain GO992_09645 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GO992_09650 PF01676 Metalloenzyme superfamily GO992_09655 PF01048 Phosphorylase superfamily GO992_09665 PF18429 Domain of unknown function (DUF5609) GO992_09680 PF18073 Rubredoxin metal binding domain GO992_09685 PF07238 PilZ domain GO992_09690 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO992_09695 PF00216 Bacterial DNA-binding protein GO992_09710 PF01207 Dihydrouridine synthase (Dus) GO992_09715 PF01475 Ferric uptake regulator family GO992_09730 PF05525 Branched-chain amino acid transport protein GO992_09735 PF05175 Methyltransferase small domain GO992_09740 PF00271 Helicase conserved C-terminal domain GO992_09740 PF00270 DEAD/DEAH box helicase GO992_09745 PF03883 Peroxide stress protein YaaA GO992_09750 PF00437 Type II/IV secretion system protein GO992_09755 PF00437 Type II/IV secretion system protein GO992_09760 PF01168 Alanine racemase, N-terminal domain GO992_09765 PF14748 Pyrroline-5-carboxylate reductase dimerisation GO992_09765 PF03807 NADP oxidoreductase coenzyme F420-dependent GO992_09770 PF02325 YGGT family GO992_09775 PF02594 Uncharacterised ACR, YggU family COG1872 GO992_09790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_09800 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_09805 PF10952 Protein of unknown function (DUF2753) GO992_09810 PF00378 Enoyl-CoA hydratase/isomerase GO992_09825 PF00106 short chain dehydrogenase GO992_09830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_09830 PF03466 LysR substrate binding domain GO992_09835 PF04371 Porphyromonas-type peptidyl-arginine deiminase GO992_09840 PF01425 Amidase GO992_09860 PF00909 Ammonium Transporter Family GO992_09865 PF00543 Nitrogen regulatory protein P-II GO992_09870 PF00990 Diguanylate cyclase, GGDEF domain GO992_09870 PF00072 Response regulator receiver domain GO992_09890 PF00990 Diguanylate cyclase, GGDEF domain GO992_09900 PF00313 'Cold-shock' DNA-binding domain GO992_09905 PF17151 Periplasmic sensor domain GO992_09905 PF00990 Diguanylate cyclase, GGDEF domain GO992_09910 PF00005 ABC transporter GO992_09910 PF17755 UvrA DNA-binding domain GO992_09910 PF17760 UvrA interaction domain GO992_09915 PF00196 Bacterial regulatory proteins, luxR family GO992_09920 PF00436 Single-strand binding protein family GO992_09945 PF03372 Endonuclease/Exonuclease/phosphatase family GO992_09960 PF00271 Helicase conserved C-terminal domain GO992_09960 PF00270 DEAD/DEAH box helicase GO992_09970 PF08534 Redoxin GO992_09975 PF00403 Heavy-metal-associated domain GO992_09995 PF02583 Metal-sensitive transcriptional repressor GO992_10000 PF00155 Aminotransferase class I and II GO992_10005 PF03466 LysR substrate binding domain GO992_10005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_10015 PF04055 Radical SAM superfamily GO992_10020 PF11230 Protein of unknown function (DUF3029) GO992_10060 PF00535 Glycosyl transferase family 2 GO992_10065 PF01522 Polysaccharide deacetylase GO992_10065 PF14883 Hypothetical glycosyl hydrolase family 13 GO992_10110 PF12857 TOBE-like domain GO992_10110 PF00005 ABC transporter GO992_10115 PF00528 Binding-protein-dependent transport system inner membrane component GO992_10120 PF00528 Binding-protein-dependent transport system inner membrane component GO992_10140 PF13194 Domain of unknown function (DUF4010) GO992_10145 PF14602 Hexapeptide repeat of succinyl-transferase GO992_10145 PF12464 Maltose acetyltransferase GO992_10175 PF14552 Tautomerase enzyme GO992_10185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_10185 PF03466 LysR substrate binding domain GO992_10190 PF14698 Argininosuccinate lyase C-terminal GO992_10190 PF00206 Lyase GO992_10210 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GO992_10210 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GO992_10235 PF06055 Exopolysaccharide synthesis, ExoD GO992_10245 PF08803 Putative mono-oxygenase ydhR GO992_10270 PF07715 TonB-dependent Receptor Plug Domain GO992_10270 PF00593 TonB dependent receptor GO992_10290 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GO992_10305 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase GO992_10310 PF02602 Uroporphyrinogen-III synthase HemD GO992_10315 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GO992_10315 PF03900 Porphobilinogen deaminase, C-terminal domain GO992_10320 PF01295 Adenylate cyclase, class-I GO992_10320 PF12633 Adenylate cyclase NT domain GO992_10325 PF02230 Phospholipase/Carboxylesterase GO992_10330 PF01491 Frataxin-like domain GO992_10340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO992_10340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GO992_10345 PF01678 Diaminopimelate epimerase GO992_10355 PF02899 Phage integrase, N-terminal SAM-like domain GO992_10355 PF00589 Phage integrase family GO992_10360 PF13419 Haloacid dehalogenase-like hydrolase GO992_10370 PF00924 Mechanosensitive ion channel GO992_10380 PF07722 Peptidase C26 GO992_10400 PF00005 ABC transporter GO992_10410 PF02464 Competence-damaged protein GO992_10410 PF00994 Probable molybdopterin binding domain GO992_10415 PF01966 HD domain GO992_10415 PF00013 KH domain GO992_10415 PF12072 Domain of unknown function (DUF3552) GO992_10420 PF04204 Homoserine O-succinyltransferase GO992_10430 PF01037 Lrp/AsnC ligand binding domain GO992_10435 PF00884 Sulfatase GO992_10450 PF16657 Maltogenic Amylase, C-terminal domain GO992_10450 PF02903 Alpha amylase, N-terminal ig-like domain GO992_10450 PF00128 Alpha amylase, catalytic domain GO992_10455 PF02308 MgtC family GO992_10475 PF00106 short chain dehydrogenase GO992_10480 PF03577 Peptidase family C69 GO992_10495 PF00465 Iron-containing alcohol dehydrogenase GO992_10505 PF01053 Cys/Met metabolism PLP-dependent enzyme GO992_10515 PF12793 Sugar transport-related sRNA regulator N-term GO992_10515 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_10520 PF00141 Peroxidase GO992_10535 PF03280 Proteobacterial lipase chaperone protein GO992_10540 PF00561 alpha/beta hydrolase fold GO992_10555 PF02698 DUF218 domain GO992_10560 PF01752 Collagenase GO992_10560 PF08453 Peptidase family M9 N-terminal GO992_10580 PF03989 DNA gyrase C-terminal domain, beta-propeller GO992_10580 PF00521 DNA gyrase/topoisomerase IV, subunit A GO992_10585 PF01751 Toprim domain GO992_10585 PF00204 DNA gyrase B GO992_10585 PF00986 DNA gyrase B subunit, carboxyl terminus GO992_10585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_10595 PF00293 NUDIX domain GO992_10600 PF05728 Uncharacterised protein family (UPF0227) GO992_10605 PF00149 Calcineurin-like phosphoesterase GO992_10610 PF06853 Protein of unknown function (DUF1249) GO992_10615 PF00293 NUDIX domain GO992_10620 PF02321 Outer membrane efflux protein GO992_10625 PF00294 pfkB family carbohydrate kinase GO992_10625 PF01467 Cytidylyltransferase-like GO992_10630 PF03279 Bacterial lipid A biosynthesis acyltransferase GO992_10645 PF01865 Protein of unknown function DUF47 GO992_10650 PF01384 Phosphate transporter family GO992_10655 PF01743 Poly A polymerase head domain GO992_10655 PF12627 Probable RNA and SrmB- binding site of polymerase A GO992_10655 PF01966 HD domain GO992_10660 PF01471 Putative peptidoglycan binding domain GO992_10660 PF13401 AAA domain GO992_10665 PF16537 Type II secretion system protein B GO992_10670 PF00633 Helix-hairpin-helix motif GO992_10670 PF14815 NUDIX domain GO992_10670 PF00730 HhH-GPD superfamily base excision DNA repair protein GO992_10670 PF10576 Iron-sulfur binding domain of endonuclease III GO992_10675 PF04362 Bacterial Fe(2+) trafficking GO992_10680 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GO992_10680 PF01464 Transglycosylase SLT domain GO992_10685 PF04076 Bacterial OB fold (BOF) protein GO992_10690 PF00657 GDSL-like Lipase/Acylhydrolase GO992_10700 PF00691 OmpA family GO992_10700 PF01389 OmpA-like transmembrane domain GO992_10705 PF03886 ABC-type transport auxiliary lipoprotein component GO992_10710 PF02470 MlaD protein GO992_10715 PF04403 Paraquat-inducible protein A GO992_10720 PF17209 Hfq protein GO992_10725 PF13419 Haloacid dehalogenase-like hydrolase GO992_10740 PF00701 Dihydrodipicolinate synthetase family GO992_10745 PF08468 Methyltransferase small domain N-terminal GO992_10745 PF05175 Methyltransferase small domain GO992_10750 PF00483 Nucleotidyl transferase GO992_10755 PF08323 Starch synthase catalytic domain GO992_10755 PF00534 Glycosyl transferases group 1 GO992_10790 PF03553 Na+/H+ antiporter family GO992_10800 PF12464 Maltose acetyltransferase GO992_10800 PF14602 Hexapeptide repeat of succinyl-transferase GO992_10805 PF11941 Domain of unknown function (DUF3459) GO992_10805 PF00128 Alpha amylase, catalytic domain GO992_10810 PF02378 Phosphotransferase system, EIIC GO992_10810 PF00367 phosphotransferase system, EIIB GO992_10815 PF00356 Bacterial regulatory proteins, lacI family GO992_10825 PF02378 Phosphotransferase system, EIIC GO992_10830 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO992_10835 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO992_10835 PF02378 Phosphotransferase system, EIIC GO992_10840 PF00232 Glycosyl hydrolase family 1 GO992_10845 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GO992_10850 PF00480 ROK family GO992_10860 PF00356 Bacterial regulatory proteins, lacI family GO992_10870 PF00710 Asparaginase, N-terminal GO992_10870 PF17763 Glutaminase/Asparaginase C-terminal domain GO992_10885 PF02142 MGS-like domain GO992_10895 PF00210 Ferritin-like domain GO992_10910 PF08351 Domain of unknown function (DUF1726) GO992_10910 PF13718 GNAT acetyltransferase 2 GO992_10910 PF05127 Helicase GO992_10910 PF17176 tRNA-binding domain GO992_10915 PF00106 short chain dehydrogenase GO992_10920 PF01584 CheW-like domain GO992_10920 PF00072 Response regulator receiver domain GO992_10960 PF13808 DDE_Tnp_1-associated GO992_10960 PF01609 Transposase DDE domain GO992_10965 PF13356 Arm DNA-binding domain GO992_10965 PF00589 Phage integrase family GO992_10980 PF03739 Lipopolysaccharide export system permease LptF/LptG GO992_10985 PF03739 Lipopolysaccharide export system permease LptF/LptG GO992_10990 PF00883 Cytosol aminopeptidase family, catalytic domain GO992_10990 PF02789 Cytosol aminopeptidase family, N-terminal domain GO992_10995 PF04364 DNA polymerase III chi subunit, HolC GO992_11000 PF00133 tRNA synthetases class I (I, L, M and V) GO992_11000 PF08264 Anticodon-binding domain of tRNA GO992_11000 PF10458 Valyl tRNA synthetase tRNA binding arm GO992_11010 PF09335 SNARE associated Golgi protein GO992_11015 PF00768 D-alanyl-D-alanine carboxypeptidase GO992_11040 PF02599 Global regulator protein family GO992_11045 PF01842 ACT domain GO992_11045 PF00696 Amino acid kinase family GO992_11045 PF13840 ACT domain GO992_11050 PF02272 DHHA1 domain GO992_11050 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO992_11050 PF01411 tRNA synthetases class II (A) GO992_11055 PF02631 RecX family GO992_11060 PF00154 recA bacterial DNA recombination protein GO992_11070 PF04073 Aminoacyl-tRNA editing domain GO992_11090 PF00392 Bacterial regulatory proteins, gntR family GO992_11090 PF00155 Aminotransferase class I and II GO992_11105 PF03788 LrgA family GO992_11110 PF04172 LrgB-like family GO992_11125 PF00696 Amino acid kinase family GO992_11125 PF00742 Homoserine dehydrogenase GO992_11125 PF03447 Homoserine dehydrogenase, NAD binding domain GO992_11130 PF01053 Cys/Met metabolism PLP-dependent enzyme GO992_11135 PF01340 Met Apo-repressor, MetJ GO992_11140 PF12833 Helix-turn-helix domain GO992_11140 PF02311 AraC-like ligand binding domain GO992_11145 PF01588 Putative tRNA binding domain GO992_11150 PF03222 Tryptophan/tyrosine permease family GO992_11155 PF00459 Inositol monophosphatase family GO992_11160 PF00293 NUDIX domain GO992_11165 PF13419 Haloacid dehalogenase-like hydrolase GO992_11170 PF00579 tRNA synthetases class I (W and Y) GO992_11170 PF01479 S4 domain GO992_11175 PF00196 Bacterial regulatory proteins, luxR family GO992_11180 PF01203 Type II secretion system (T2SS), protein N GO992_11185 PF04612 Type II secretion system (T2SS), protein M GO992_11190 PF12693 GspL periplasmic domain GO992_11190 PF05134 Type II secretion system (T2SS), protein L GO992_11195 PF03934 Type II secretion system (T2SS), protein K GO992_11200 PF11612 Type II secretion system (T2SS), protein J GO992_11200 PF07963 Prokaryotic N-terminal methylation motif GO992_11205 PF02501 Type II secretion system (T2SS), protein I GO992_11205 PF07963 Prokaryotic N-terminal methylation motif GO992_11210 PF12019 Type II transport protein GspH GO992_11210 PF07963 Prokaryotic N-terminal methylation motif GO992_11215 PF08334 Type II secretion system (T2SS), protein G GO992_11215 PF07963 Prokaryotic N-terminal methylation motif GO992_11220 PF00482 Type II secretion system (T2SS), protein F GO992_11225 PF00437 Type II/IV secretion system protein GO992_11230 PF00263 Bacterial type II and III secretion system protein GO992_11230 PF03958 Bacterial type II/III secretion system short domain GO992_11235 PF11356 Type II secretion system protein C GO992_11240 PF01479 S4 domain GO992_11245 PF01430 Hsp33 protein GO992_11250 PF01293 Phosphoenolpyruvate carboxykinase GO992_11255 PF00392 Bacterial regulatory proteins, gntR family GO992_11260 PF00557 Metallopeptidase family M24 GO992_11260 PF01321 Creatinase/Prolidase N-terminal domain GO992_11265 PF11756 Nitrous oxide-stimulated promoter GO992_11270 PF00583 Acetyltransferase (GNAT) family GO992_11275 PF05433 Glycine zipper 2TM domain GO992_11280 PF00149 Calcineurin-like phosphoesterase GO992_11280 PF02872 5'-nucleotidase, C-terminal domain GO992_11285 PF01810 LysE type translocator GO992_11290 PF03472 Autoinducer binding domain GO992_11290 PF00196 Bacterial regulatory proteins, luxR family GO992_11295 PF00765 Autoinducer synthase GO992_11300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_11300 PF03466 LysR substrate binding domain GO992_11305 PF00773 RNB domain GO992_11305 PF17876 Cold shock domain GO992_11305 PF08206 Ribonuclease B OB domain GO992_11325 PF08125 Mannitol dehydrogenase C-terminal domain GO992_11325 PF01232 Mannitol dehydrogenase Rossmann domain GO992_11330 PF05068 Mannitol repressor GO992_11335 PF03471 Transporter associated domain GO992_11335 PF00999 Sodium/hydrogen exchanger family GO992_11335 PF02080 TrkA-C domain GO992_11340 PF01556 DnaJ C terminal domain GO992_11340 PF00684 DnaJ central domain GO992_11340 PF00226 DnaJ domain GO992_11355 PF01544 CorA-like Mg2+ transporter protein GO992_11360 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GO992_11375 PF04307 LexA-binding, inner membrane-associated putative hydrolase GO992_11380 PF07670 Nucleoside recognition GO992_11380 PF01773 Na+ dependent nucleoside transporter N-terminus GO992_11380 PF07662 Na+ dependent nucleoside transporter C-terminus GO992_11400 PF00271 Helicase conserved C-terminal domain GO992_11400 PF00270 DEAD/DEAH box helicase GO992_11400 PF03880 DbpA RNA binding domain GO992_11420 PF13808 DDE_Tnp_1-associated GO992_11420 PF01609 Transposase DDE domain GO992_11435 PF01040 UbiA prenyltransferase family GO992_11440 PF00425 chorismate binding enzyme GO992_11445 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO992_11445 PF16582 Middle domain of thiamine pyrophosphate GO992_11445 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO992_11450 PF12697 Alpha/beta hydrolase family GO992_11455 PF00378 Enoyl-CoA hydratase/isomerase GO992_11460 PF13378 Enolase C-terminal domain-like GO992_11465 PF00501 AMP-binding enzyme GO992_11475 PF00472 RF-1 domain GO992_11480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GO992_11480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GO992_11485 PF07670 Nucleoside recognition GO992_11485 PF01773 Na+ dependent nucleoside transporter N-terminus GO992_11485 PF07662 Na+ dependent nucleoside transporter C-terminus GO992_11490 PF03466 LysR substrate binding domain GO992_11490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_11495 PF00255 Glutathione peroxidase GO992_11505 PF02595 Glycerate kinase family GO992_11510 PF02447 GntP family permease GO992_11515 PF13556 PucR C-terminal helix-turn-helix domain GO992_11515 PF05651 Putative sugar diacid recognition GO992_11515 PF17853 GGDEF-like domain GO992_11520 PF06062 Uncharacterised protein family (UPF0231) GO992_11580 PF00684 DnaJ central domain GO992_11580 PF00226 DnaJ domain GO992_11580 PF01556 DnaJ C terminal domain GO992_11585 PF07681 DoxX GO992_11590 PF00085 Thioredoxin GO992_11610 PF01553 Acyltransferase GO992_11630 PF01541 GIY-YIG catalytic domain GO992_11645 PF03167 Uracil DNA glycosylase superfamily GO992_11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_11655 PF03466 LysR substrate binding domain GO992_11660 PF00950 ABC 3 transport family GO992_11665 PF00005 ABC transporter GO992_11670 PF01297 Zinc-uptake complex component A periplasmic GO992_11690 PF01476 LysM domain GO992_11690 PF08525 Opacity-associated protein A N-terminal motif GO992_11690 PF01551 Peptidase family M23 GO992_11695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_11700 PF04222 Protein of unknown function (DUF416) GO992_11715 PF02028 BCCT, betaine/carnitine/choline family transporter GO992_11720 PF01624 MutS domain I GO992_11720 PF05190 MutS family domain IV GO992_11720 PF00488 MutS domain V GO992_11720 PF05192 MutS domain III GO992_11720 PF05188 MutS domain II GO992_11730 PF06953 Arsenical resistance operon trans-acting repressor ArsD GO992_11740 PF01758 Sodium Bile acid symporter family GO992_11745 PF03960 ArsC family GO992_11765 PF00311 Phosphoenolpyruvate carboxylase GO992_11770 PF01546 Peptidase family M20/M25/M40 GO992_11770 PF07687 Peptidase dimerisation domain GO992_11775 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO992_11775 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO992_11800 PF01609 Transposase DDE domain GO992_11800 PF13808 DDE_Tnp_1-associated GO992_11805 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GO992_11810 PF02719 Polysaccharide biosynthesis protein GO992_11815 PF02903 Alpha amylase, N-terminal ig-like domain GO992_11815 PF00128 Alpha amylase, catalytic domain GO992_11830 PF00012 Hsp70 protein GO992_11835 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_11835 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO992_11840 PF05981 CreA protein GO992_11850 PF01258 Prokaryotic dksA/traR C4-type zinc finger GO992_11855 PF00120 Glutamine synthetase, catalytic domain GO992_11860 PF00202 Aminotransferase class-III GO992_11865 PF13416 Bacterial extracellular solute-binding protein GO992_11870 PF13416 Bacterial extracellular solute-binding protein GO992_11875 PF08402 TOBE domain GO992_11875 PF00005 ABC transporter GO992_11880 PF00528 Binding-protein-dependent transport system inner membrane component GO992_11885 PF00528 Binding-protein-dependent transport system inner membrane component GO992_11890 PF03475 3-alpha domain GO992_11890 PF03473 MOSC domain GO992_11905 PF03061 Thioesterase superfamily GO992_11910 PF00270 DEAD/DEAH box helicase GO992_11910 PF00271 Helicase conserved C-terminal domain GO992_11910 PF00570 HRDC domain GO992_11910 PF16124 RecQ zinc-binding GO992_11910 PF09382 RQC domain GO992_11915 PF00034 Cytochrome c GO992_11930 PF02592 Putative vitamin uptake transporter GO992_11935 PF03737 Aldolase/RraA GO992_11940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_11940 PF00672 HAMP domain GO992_11945 PF01769 Divalent cation transporter GO992_11945 PF00571 CBS domain GO992_11945 PF03448 MgtE intracellular N domain GO992_11950 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GO992_11950 PF14824 Sirohaem biosynthesis protein central GO992_11950 PF10414 Sirohaem synthase dimerisation region GO992_11955 PF01226 Formate/nitrite transporter GO992_11960 PF13806 Rieske-like [2Fe-2S] domain GO992_11965 PF18267 Rubredoxin NAD+ reductase C-terminal domain GO992_11965 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_11965 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GO992_11965 PF04324 BFD-like [2Fe-2S] binding domain GO992_11965 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GO992_11970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_11970 PF03466 LysR substrate binding domain GO992_11975 PF07690 Major Facilitator Superfamily GO992_11980 PF07724 AAA domain (Cdc48 subfamily) GO992_11980 PF10431 C-terminal, D2-small domain, of ClpB protein GO992_11980 PF00004 ATPase family associated with various cellular activities (AAA) GO992_11985 PF00227 Proteasome subunit GO992_11995 PF05746 DALR anticodon binding domain GO992_11995 PF00750 tRNA synthetases class I (R) GO992_11995 PF03485 Arginyl tRNA synthetase N terminal domain GO992_12005 PF04545 Sigma-70, region 4 GO992_12005 PF04542 Sigma-70 region 2 GO992_12015 PF02673 Bacitracin resistance protein BacA GO992_12020 PF00248 Aldo/keto reductase family GO992_12025 PF01263 Aldose 1-epimerase GO992_12030 PF10509 Galactokinase galactose-binding signature GO992_12030 PF00288 GHMP kinases N terminal domain GO992_12030 PF08544 GHMP kinases C terminal GO992_12035 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GO992_12035 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GO992_12040 PF16363 GDP-mannose 4,6 dehydratase GO992_12045 PF00356 Bacterial regulatory proteins, lacI family GO992_12050 PF02837 Glycosyl hydrolases family 2, sugar binding domain GO992_12050 PF16353 Domain of unknown function(DUF4981) GO992_12050 PF02929 Beta galactosidase small chain GO992_12050 PF00703 Glycosyl hydrolases family 2 GO992_12050 PF02836 Glycosyl hydrolases family 2, TIM barrel domain GO992_12055 PF13407 Periplasmic binding protein domain GO992_12060 PF00005 ABC transporter GO992_12065 PF02653 Branched-chain amino acid transport system / permease component GO992_12070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_12070 PF00672 HAMP domain GO992_12070 PF02743 Cache domain GO992_12075 PF00872 Transposase, Mutator family GO992_12095 PF01609 Transposase DDE domain GO992_12095 PF13808 DDE_Tnp_1-associated GO992_12125 PF00199 Catalase GO992_12125 PF06628 Catalase-related immune-responsive GO992_12130 PF00583 Acetyltransferase (GNAT) family GO992_12150 PF00990 Diguanylate cyclase, GGDEF domain GO992_12160 PF00005 ABC transporter GO992_12160 PF08402 TOBE domain GO992_12170 PF00528 Binding-protein-dependent transport system inner membrane component GO992_12185 PF07702 UTRA domain GO992_12185 PF00392 Bacterial regulatory proteins, gntR family GO992_12195 PF03466 LysR substrate binding domain GO992_12195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_12205 PF02678 Pirin GO992_12205 PF17954 Quercetinase C-terminal cupin domain GO992_12210 PF07681 DoxX GO992_12215 PF17946 RecC C-terminal domain GO992_12220 PF12705 PD-(D/E)XK nuclease superfamily GO992_12220 PF13361 UvrD-like helicase C-terminal domain GO992_12220 PF00580 UvrD/REP helicase N-terminal domain GO992_12225 PF13538 UvrD-like helicase C-terminal domain GO992_12290 PF05958 tRNA (Uracil-5-)-methyltransferase GO992_12295 PF00486 Transcriptional regulatory protein, C terminal GO992_12295 PF00072 Response regulator receiver domain GO992_12300 PF00512 His Kinase A (phospho-acceptor) domain GO992_12300 PF00672 HAMP domain GO992_12300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_12310 PF00390 Malic enzyme, N-terminal domain GO992_12310 PF03949 Malic enzyme, NAD binding domain GO992_12315 PF13460 NAD(P)H-binding GO992_12315 PF11066 Protein of unknown function (DUF2867) GO992_12320 PF01197 Ribosomal protein L31 GO992_12325 PF17764 3′ DNA-binding domain (3′BD) GO992_12325 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GO992_12325 PF18074 Primosomal protein N C-terminal domain GO992_12325 PF00271 Helicase conserved C-terminal domain GO992_12325 PF00270 DEAD/DEAH box helicase GO992_12335 PF00440 Bacterial regulatory proteins, tetR family GO992_12345 PF01389 OmpA-like transmembrane domain GO992_12345 PF00691 OmpA family GO992_12350 PF00585 C-terminal regulatory domain of Threonine dehydratase GO992_12350 PF00291 Pyridoxal-phosphate dependent enzyme GO992_12355 PF00920 Dehydratase family GO992_12360 PF01063 Amino-transferase class IV GO992_12370 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO992_12370 PF00205 Thiamine pyrophosphate enzyme, central domain GO992_12370 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO992_12380 PF01078 Magnesium chelatase, subunit ChlI GO992_12380 PF13335 Magnesium chelatase, subunit ChlI C-terminal GO992_12390 PF04463 Protein of unknown function (DUF523) GO992_12400 PF00857 Isochorismatase family GO992_12405 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GO992_12405 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GO992_12415 PF00005 ABC transporter GO992_12425 PF01323 DSBA-like thioredoxin domain GO992_12430 PF01636 Phosphotransferase enzyme family GO992_12435 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase GO992_12435 PF12801 4Fe-4S binding domain GO992_12435 PF13746 4Fe-4S dicluster domain GO992_12440 PF06288 Protein of unknown function (DUF1040) GO992_12445 PF00563 EAL domain GO992_12445 PF01590 GAF domain GO992_12445 PF00990 Diguanylate cyclase, GGDEF domain GO992_12445 PF00360 Phytochrome region GO992_12450 PF13411 MerR HTH family regulatory protein GO992_12455 PF00403 Heavy-metal-associated domain GO992_12460 PF00156 Phosphoribosyl transferase domain GO992_12465 PF01138 3' exoribonuclease family, domain 1 GO992_12465 PF03725 3' exoribonuclease family, domain 2 GO992_12470 PF03755 YicC-like family, N-terminal region GO992_12470 PF08340 Domain of unknown function (DUF1732) GO992_12485 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) GO992_12515 PF13808 DDE_Tnp_1-associated GO992_12515 PF01609 Transposase DDE domain GO992_12520 PF13358 DDE superfamily endonuclease GO992_12520 PF13592 Winged helix-turn helix GO992_12530 PF01370 NAD dependent epimerase/dehydratase family GO992_12535 PF00440 Bacterial regulatory proteins, tetR family GO992_12535 PF08360 QacR-like protein, C-terminal region GO992_12540 PF00155 Aminotransferase class I and II GO992_12545 PF00107 Zinc-binding dehydrogenase GO992_12545 PF08240 Alcohol dehydrogenase GroES-like domain GO992_12570 PF13361 UvrD-like helicase C-terminal domain GO992_12570 PF00580 UvrD/REP helicase N-terminal domain GO992_12575 PF00266 Aminotransferase class-V GO992_12580 PF02657 Fe-S metabolism associated domain GO992_12585 PF00899 ThiF family GO992_12615 PF12724 Flavodoxin domain GO992_12620 PF02386 Cation transport protein GO992_12625 PF01205 Uncharacterized protein family UPF0029 GO992_12625 PF09186 Domain of unknown function (DUF1949) GO992_12630 PF00557 Metallopeptidase family M24 GO992_12635 PF00501 AMP-binding enzyme GO992_12635 PF13193 AMP-binding enzyme C-terminal domain GO992_12640 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GO992_12640 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GO992_12640 PF00378 Enoyl-CoA hydratase/isomerase GO992_12645 PF00108 Thiolase, N-terminal domain GO992_12645 PF02803 Thiolase, C-terminal domain GO992_12650 PF00486 Transcriptional regulatory protein, C terminal GO992_12650 PF00072 Response regulator receiver domain GO992_12655 PF00512 His Kinase A (phospho-acceptor) domain GO992_12655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_12655 PF00672 HAMP domain GO992_12660 PF01547 Bacterial extracellular solute-binding protein GO992_12670 PF01206 Sulfurtransferase TusA GO992_12675 PF01042 Endoribonuclease L-PSP GO992_12680 PF00691 OmpA family GO992_12680 PF13488 Glycine zipper GO992_12685 PF03352 Methyladenine glycosylase GO992_12690 PF02091 Glycyl-tRNA synthetase alpha subunit GO992_12695 PF05746 DALR anticodon binding domain GO992_12695 PF02092 Glycyl-tRNA synthetase beta subunit GO992_12705 PF00872 Transposase, Mutator family GO992_12710 PF01609 Transposase DDE domain GO992_12720 PF09013 YopH, N-terminal GO992_12720 PF00102 Protein-tyrosine phosphatase GO992_12745 PF01202 Shikimate kinase GO992_12755 PF00563 EAL domain GO992_12755 PF00990 Diguanylate cyclase, GGDEF domain GO992_12755 PF13426 PAS domain GO992_12765 PF05932 Tir chaperone protein (CesT) family GO992_12770 PF03222 Tryptophan/tyrosine permease family GO992_12775 PF12801 4Fe-4S binding domain GO992_12785 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_12785 PF18113 Rubredoxin binding C-terminal domain GO992_12790 PF00258 Flavodoxin GO992_12790 PF00301 Rubredoxin GO992_12790 PF00753 Metallo-beta-lactamase superfamily GO992_12795 PF00158 Sigma-54 interaction domain GO992_12795 PF01590 GAF domain GO992_12800 PF00392 Bacterial regulatory proteins, gntR family GO992_12800 PF07702 UTRA domain GO992_12805 PF13808 DDE_Tnp_1-associated GO992_12805 PF01609 Transposase DDE domain GO992_12810 PF00367 phosphotransferase system, EIIB GO992_12810 PF02378 Phosphotransferase system, EIIC GO992_12830 PF00356 Bacterial regulatory proteins, lacI family GO992_12835 PF13458 Periplasmic binding protein GO992_12840 PF02653 Branched-chain amino acid transport system / permease component GO992_12845 PF02653 Branched-chain amino acid transport system / permease component GO992_12845 PF11862 Domain of unknown function (DUF3382) GO992_12850 PF00005 ABC transporter GO992_12850 PF12399 Branched-chain amino acid ATP-binding cassette transporter GO992_12865 PF01810 LysE type translocator GO992_12870 PF00581 Rhodanese-like domain GO992_12875 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease GO992_12875 PF01694 Rhomboid family GO992_12880 PF12262 Bacterial virulence factor lipase N-terminal GO992_12885 PF04380 Membrane fusogenic activity GO992_12890 PF00175 Oxidoreductase NAD-binding domain GO992_12895 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GO992_12905 PF07498 Rho termination factor, N-terminal domain GO992_12905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO992_12905 PF07497 Rho termination factor, RNA-binding domain GO992_12910 PF00085 Thioredoxin GO992_12915 PF00271 Helicase conserved C-terminal domain GO992_12915 PF00270 DEAD/DEAH box helicase GO992_12920 PF02541 Ppx/GppA phosphatase family GO992_12930 PF04445 Putative SAM-dependent methyltransferase GO992_12935 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_12940 PF03707 Bacterial signalling protein N terminal repeat GO992_12940 PF00990 Diguanylate cyclase, GGDEF domain GO992_12940 PF00563 EAL domain GO992_12945 PF01432 Peptidase family M3 GO992_12950 PF00490 Delta-aminolevulinic acid dehydratase GO992_12955 PF01026 TatD related DNase GO992_12960 PF00902 Sec-independent protein translocase protein (TatC) GO992_12965 PF02416 mttA/Hcf106 family GO992_12970 PF02416 mttA/Hcf106 family GO992_12975 PF03109 ABC1 family GO992_12980 PF02036 SCP-2 sterol transfer family GO992_12985 PF01209 ubiE/COQ5 methyltransferase family GO992_12990 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GO992_12995 PF07969 Amidohydrolase family GO992_13035 PF03544 Gram-negative bacterial TonB protein C-terminal GO992_13040 PF02472 Biopolymer transport protein ExbD/TolR GO992_13045 PF01618 MotA/TolQ/ExbB proton channel family GO992_13050 PF01618 MotA/TolQ/ExbB proton channel family GO992_13060 PF00196 Bacterial regulatory proteins, luxR family GO992_13060 PF03472 Autoinducer binding domain GO992_13065 PF01380 SIS domain GO992_13070 PF08220 DeoR-like helix-turn-helix domain GO992_13070 PF00455 DeoR C terminal sensor domain GO992_13075 PF00072 Response regulator receiver domain GO992_13075 PF00486 Transcriptional regulatory protein, C terminal GO992_13080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13080 PF00672 HAMP domain GO992_13080 PF00512 His Kinase A (phospho-acceptor) domain GO992_13085 PF00905 Penicillin binding protein transpeptidase domain GO992_13090 PF06123 Inner membrane protein CreD GO992_13095 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_13095 PF14602 Hexapeptide repeat of succinyl-transferase GO992_13095 PF12804 MobA-like NTP transferase domain GO992_13100 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GO992_13100 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GO992_13105 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO992_13105 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO992_13110 PF00231 ATP synthase GO992_13115 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO992_13115 PF00306 ATP synthase alpha/beta chain, C terminal domain GO992_13115 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO992_13120 PF00213 ATP synthase delta (OSCP) subunit GO992_13125 PF00430 ATP synthase B/B' CF(0) GO992_13130 PF00137 ATP synthase subunit C GO992_13135 PF00119 ATP synthase A chain GO992_13140 PF03899 ATP synthase I chain GO992_13145 PF02195 ParB-like nuclease domain GO992_13145 PF17762 HTH domain found in ParB protein GO992_13150 PF13614 AAA domain GO992_13155 PF02527 rRNA small subunit methyltransferase G GO992_13160 PF13932 GidA associated domain GO992_13160 PF01134 Glucose inhibited division protein A GO992_13165 PF00258 Flavodoxin GO992_13170 PF00593 TonB dependent receptor GO992_13170 PF07715 TonB-dependent Receptor Plug Domain GO992_13175 PF00005 ABC transporter GO992_13180 PF00005 ABC transporter GO992_13185 PF01497 Periplasmic binding protein GO992_13195 PF07715 TonB-dependent Receptor Plug Domain GO992_13195 PF00593 TonB dependent receptor GO992_13200 PF01497 Periplasmic binding protein GO992_13205 PF00005 ABC transporter GO992_13210 PF01032 FecCD transport family GO992_13215 PF01032 FecCD transport family GO992_13220 PF00005 ABC transporter GO992_13225 PF00005 ABC transporter GO992_13225 PF08021 Siderophore-interacting FAD-binding domain GO992_13225 PF00664 ABC transporter transmembrane region GO992_13225 PF04954 Siderophore-interacting protein GO992_13235 PF00501 AMP-binding enzyme GO992_13235 PF00975 Thioesterase domain GO992_13235 PF00550 Phosphopantetheine attachment site GO992_13235 PF00668 Condensation domain GO992_13235 PF13193 AMP-binding enzyme C-terminal domain GO992_13240 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) GO992_13245 PF00501 AMP-binding enzyme GO992_13245 PF00668 Condensation domain GO992_13245 PF00550 Phosphopantetheine attachment site GO992_13255 PF00282 Pyridoxal-dependent decarboxylase conserved domain GO992_13260 PF12631 MnmE helical domain GO992_13260 PF10396 GTP-binding protein TrmE N-terminus GO992_13260 PF01926 50S ribosome-binding GTPase GO992_13265 PF14849 YidC periplasmic domain GO992_13265 PF02096 60Kd inner membrane protein GO992_13270 PF01809 Putative membrane protein insertion efficiency factor GO992_13275 PF00825 Ribonuclease P GO992_13280 PF00468 Ribosomal protein L34 GO992_13290 PF00528 Binding-protein-dependent transport system inner membrane component GO992_13295 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_13300 PF08299 Bacterial dnaA protein helix-turn-helix GO992_13300 PF00308 Bacterial dnaA protein GO992_13300 PF11638 DnaA N-terminal domain GO992_13305 PF02768 DNA polymerase III beta subunit, C-terminal domain GO992_13305 PF02767 DNA polymerase III beta subunit, central domain GO992_13305 PF00712 DNA polymerase III beta subunit, N-terminal domain GO992_13310 PF02463 RecF/RecN/SMC N terminal domain GO992_13315 PF18053 DNA gyrase B subunit insert domain GO992_13315 PF00204 DNA gyrase B GO992_13315 PF00986 DNA gyrase B subunit, carboxyl terminus GO992_13315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13315 PF01751 Toprim domain GO992_13330 PF08279 HTH domain GO992_13330 PF13280 WYL domain GO992_13335 PF00011 Hsp20/alpha crystallin family GO992_13340 PF00011 Hsp20/alpha crystallin family GO992_13355 PF00155 Aminotransferase class I and II GO992_13370 PF07690 Major Facilitator Superfamily GO992_13380 PF00486 Transcriptional regulatory protein, C terminal GO992_13380 PF00072 Response regulator receiver domain GO992_13385 PF02702 Osmosensitive K+ channel His kinase sensor domain GO992_13385 PF13493 Domain of unknown function (DUF4118) GO992_13385 PF13492 GAF domain GO992_13385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13385 PF00512 His Kinase A (phospho-acceptor) domain GO992_13390 PF02669 K+-transporting ATPase, c chain GO992_13410 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_13410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO992_13415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13415 PF00512 His Kinase A (phospho-acceptor) domain GO992_13415 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_13420 PF00873 AcrB/AcrD/AcrF family GO992_13425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_13430 PF00440 Bacterial regulatory proteins, tetR family GO992_13470 PF12105 SpoU, rRNA methylase, C-terminal GO992_13470 PF00588 SpoU rRNA Methylase family GO992_13475 PF02824 TGS domain GO992_13475 PF04607 Region found in RelA / SpoT proteins GO992_13475 PF13291 ACT domain GO992_13480 PF01192 RNA polymerase Rpb6 GO992_13485 PF00625 Guanylate kinase GO992_13495 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO992_13510 PF00892 EamA-like transporter family GO992_13530 PF03466 LysR substrate binding domain GO992_13530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_13535 PF00579 tRNA synthetases class I (W and Y) GO992_13540 PF00582 Universal stress protein family GO992_13545 PF07055 Enoyl reductase FAD binding domain GO992_13545 PF12241 Trans-2-enoyl-CoA reductase catalytic region GO992_13545 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GO992_13550 PF00990 Diguanylate cyclase, GGDEF domain GO992_13550 PF08448 PAS fold GO992_13555 PF00210 Ferritin-like domain GO992_13565 PF01810 LysE type translocator GO992_13600 PF01609 Transposase DDE domain GO992_13600 PF13808 DDE_Tnp_1-associated GO992_13605 PF01627 Hpt domain GO992_13605 PF00072 Response regulator receiver domain GO992_13605 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_13605 PF00512 His Kinase A (phospho-acceptor) domain GO992_13605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13605 PF00989 PAS fold GO992_13615 PF07694 5TMR of 5TMR-LYT GO992_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13615 PF06580 Histidine kinase GO992_13620 PF04397 LytTr DNA-binding domain GO992_13620 PF00072 Response regulator receiver domain GO992_13625 PF07690 Major Facilitator Superfamily GO992_13630 PF02222 ATP-grasp domain GO992_13630 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GO992_13635 PF00731 AIR carboxylase GO992_13650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_13650 PF03466 LysR substrate binding domain GO992_13655 PF07715 TonB-dependent Receptor Plug Domain GO992_13655 PF00593 TonB dependent receptor GO992_13660 PF01177 Asp/Glu/Hydantoin racemase GO992_13690 PF00583 Acetyltransferase (GNAT) family GO992_13690 PF13380 CoA binding domain GO992_13690 PF13607 Succinyl-CoA ligase like flavodoxin domain GO992_13705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_13705 PF03466 LysR substrate binding domain GO992_13710 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GO992_13710 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GO992_13715 PF00342 Phosphoglucose isomerase GO992_13725 PF00924 Mechanosensitive ion channel GO992_13725 PF05552 Conserved TM helix GO992_13730 PF00440 Bacterial regulatory proteins, tetR family GO992_13735 PF00692 dUTPase GO992_13740 PF04127 DNA / pantothenate metabolism flavoprotein GO992_13740 PF02441 Flavoprotein GO992_13745 PF04002 RadC-like JAB domain GO992_13750 PF00830 Ribosomal L28 family GO992_13755 PF00471 Ribosomal protein L33 GO992_13765 PF06827 Zinc finger found in FPG and IleRS GO992_13765 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GO992_13765 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GO992_13770 PF04393 Protein of unknown function (DUF535) GO992_13775 PF01467 Cytidylyltransferase-like GO992_13780 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO992_13785 PF00535 Glycosyl transferase family 2 GO992_13790 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO992_13795 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) GO992_13800 PF03611 PTS system sugar-specific permease component GO992_13810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO992_13815 PF00356 Bacterial regulatory proteins, lacI family GO992_13815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO992_13840 PF03748 Flagellar basal body-associated protein FliL GO992_13845 PF04345 Chorismate lyase GO992_13850 PF01040 UbiA prenyltransferase family GO992_13855 PF01553 Acyltransferase GO992_13860 PF00717 Peptidase S24-like GO992_13860 PF01726 LexA DNA binding domain GO992_13870 PF02630 SCO1/SenC GO992_13875 PF01554 MatE GO992_13880 PF00588 SpoU rRNA Methylase family GO992_13885 PF00672 HAMP domain GO992_13885 PF16527 Two-component sensor protein CpxA, periplasmic domain GO992_13885 PF00512 His Kinase A (phospho-acceptor) domain GO992_13885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_13890 PF00072 Response regulator receiver domain GO992_13890 PF00486 Transcriptional regulatory protein, C terminal GO992_13895 PF01545 Cation efflux family GO992_13895 PF16916 Dimerisation domain of Zinc Transporter GO992_13900 PF06426 Serine acetyltransferase, N-terminal GO992_13900 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_13910 PF06005 Cell division protein ZapB GO992_13920 PF00476 DNA polymerase family A GO992_13920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GO992_13920 PF01612 3'-5' exonuclease GO992_13920 PF01367 5'-3' exonuclease, C-terminal SAM fold GO992_13925 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_13975 PF00356 Bacterial regulatory proteins, lacI family GO992_13985 PF03781 Sulfatase-modifying factor enzyme 1 GO992_13985 PF12867 DinB superfamily GO992_13995 PF00756 Putative esterase GO992_14000 PF08240 Alcohol dehydrogenase GroES-like domain GO992_14000 PF00107 Zinc-binding dehydrogenase GO992_14005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_14005 PF03466 LysR substrate binding domain GO992_14030 PF00580 UvrD/REP helicase N-terminal domain GO992_14030 PF13361 UvrD-like helicase C-terminal domain GO992_14070 PF01810 LysE type translocator GO992_14075 PF04143 Sulphur transport GO992_14080 PF13808 DDE_Tnp_1-associated GO992_14080 PF01609 Transposase DDE domain GO992_14090 PF00202 Aminotransferase class-III GO992_14095 PF00171 Aldehyde dehydrogenase family GO992_14100 PF00958 GMP synthase C terminal domain GO992_14100 PF02540 NAD synthase GO992_14100 PF00117 Glutamine amidotransferase class-I GO992_14105 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GO992_14105 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GO992_14110 PF00294 pfkB family carbohydrate kinase GO992_14115 PF02082 Transcriptional regulator GO992_14130 PF02646 RmuC family GO992_14135 PF02386 Cation transport protein GO992_14140 PF02080 TrkA-C domain GO992_14140 PF02254 TrkA-N domain GO992_14145 PF01029 NusB family GO992_14145 PF01189 16S rRNA methyltransferase RsmB/F GO992_14150 PF00551 Formyl transferase GO992_14150 PF02911 Formyl transferase, C-terminal domain GO992_14155 PF01327 Polypeptide deformylase GO992_14160 PF01476 LysM domain GO992_14180 PF04361 Protein of unknown function (DUF494) GO992_14185 PF01396 Topoisomerase DNA binding C4 zinc finger GO992_14190 PF00731 AIR carboxylase GO992_14195 PF01300 Telomere recombination GO992_14200 PF01218 Coproporphyrinogen III oxidase GO992_14205 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GO992_14205 PF01488 Shikimate / quinate 5-dehydrogenase GO992_14205 PF08501 Shikimate dehydrogenase substrate binding domain GO992_14210 PF07369 Protein of unknown function (DUF1488) GO992_14220 PF01926 50S ribosome-binding GTPase GO992_14225 PF00034 Cytochrome c GO992_14230 PF04220 Der GTPase activator (YihI) GO992_14235 PF10675 Protein of unknown function (DUF2489) GO992_14240 PF04055 Radical SAM superfamily GO992_14240 PF06969 HemN C-terminal domain GO992_14245 PF00962 Adenosine/AMP deaminase GO992_14250 PF00158 Sigma-54 interaction domain GO992_14250 PF02954 Bacterial regulatory protein, Fis family GO992_14250 PF00072 Response regulator receiver domain GO992_14255 PF00989 PAS fold GO992_14255 PF00512 His Kinase A (phospho-acceptor) domain GO992_14255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_14265 PF03951 Glutamine synthetase, beta-Grasp domain GO992_14265 PF00120 Glutamine synthetase, catalytic domain GO992_14275 PF03631 Virulence factor BrkB GO992_14280 PF02580 D-Tyr-tRNA(Tyr) deacylase GO992_14290 PF09500 Putative thioesterase (yiiD_Cterm) GO992_14290 PF00583 Acetyltransferase (GNAT) family GO992_14300 PF00270 DEAD/DEAH box helicase GO992_14300 PF00271 Helicase conserved C-terminal domain GO992_14300 PF17191 RecG wedge domain GO992_14305 PF13091 PLD-like domain GO992_14310 PF02447 GntP family permease GO992_14315 PF01202 Shikimate kinase GO992_14320 PF00920 Dehydratase family GO992_14325 PF01081 KDPG and KHG aldolase GO992_14330 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO992_14330 PF00356 Bacterial regulatory proteins, lacI family GO992_14340 PF01551 Peptidase family M23 GO992_14345 PF01676 Metalloenzyme superfamily GO992_14345 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GO992_14350 PF00581 Rhodanese-like domain GO992_14355 PF02556 Preprotein translocase subunit SecB GO992_14360 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GO992_14360 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GO992_14365 PF01521 Iron-sulphur cluster biosynthesis GO992_14365 PF01106 NifU-like domain GO992_14370 PF00156 Phosphoribosyl transferase domain GO992_14375 PF00561 alpha/beta hydrolase fold GO992_14395 PF09371 Tex-like protein N-terminal domain GO992_14395 PF00575 S1 RNA binding domain GO992_14395 PF17674 HHH domain GO992_14395 PF16921 Tex protein YqgF-like domain GO992_14400 PF01272 Transcription elongation factor, GreA/GreB, C-term GO992_14400 PF03449 Transcription elongation factor, N-terminal GO992_14405 PF00486 Transcriptional regulatory protein, C terminal GO992_14405 PF00072 Response regulator receiver domain GO992_14410 PF00512 His Kinase A (phospho-acceptor) domain GO992_14410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_14410 PF00672 HAMP domain GO992_14420 PF00338 Ribosomal protein S10p/S20e GO992_14425 PF00297 Ribosomal protein L3 GO992_14430 PF00573 Ribosomal protein L4/L1 family GO992_14435 PF00276 Ribosomal protein L23 GO992_14440 PF00181 Ribosomal Proteins L2, RNA binding domain GO992_14440 PF03947 Ribosomal Proteins L2, C-terminal domain GO992_14445 PF00203 Ribosomal protein S19 GO992_14450 PF00237 Ribosomal protein L22p/L17e GO992_14455 PF00189 Ribosomal protein S3, C-terminal domain GO992_14455 PF07650 KH domain GO992_14460 PF00252 Ribosomal protein L16p/L10e GO992_14465 PF00831 Ribosomal L29 protein GO992_14470 PF00366 Ribosomal protein S17 GO992_14475 PF00238 Ribosomal protein L14p/L23e GO992_14480 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GO992_14485 PF00673 ribosomal L5P family C-terminus GO992_14485 PF00281 Ribosomal protein L5 GO992_14490 PF00253 Ribosomal protein S14p/S29e GO992_14495 PF00410 Ribosomal protein S8 GO992_14500 PF00347 Ribosomal protein L6 GO992_14505 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GO992_14510 PF00333 Ribosomal protein S5, N-terminal domain GO992_14510 PF03719 Ribosomal protein S5, C-terminal domain GO992_14515 PF00327 Ribosomal protein L30p/L7e GO992_14520 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GO992_14525 PF00344 SecY translocase GO992_14530 PF00444 Ribosomal protein L36 GO992_14535 PF00416 Ribosomal protein S13/S18 GO992_14540 PF00411 Ribosomal protein S11 GO992_14545 PF01479 S4 domain GO992_14545 PF00163 Ribosomal protein S4/S9 N-terminal domain GO992_14550 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GO992_14550 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GO992_14550 PF01000 RNA polymerase Rpb3/RpoA insert domain GO992_14555 PF01196 Ribosomal protein L17 GO992_14595 PF00860 Permease family GO992_14600 PF02733 Dak1 domain GO992_14605 PF02734 DAK2 domain GO992_14610 PF05524 PEP-utilising enzyme, N-terminal GO992_14610 PF03610 PTS system fructose IIA component GO992_14610 PF00381 PTS HPr component phosphorylation site GO992_14610 PF00391 PEP-utilising enzyme, mobile domain GO992_14615 PF00465 Iron-containing alcohol dehydrogenase GO992_14620 PF00158 Sigma-54 interaction domain GO992_14620 PF00989 PAS fold GO992_14620 PF02954 Bacterial regulatory protein, Fis family GO992_14625 PF01594 AI-2E family transporter GO992_14635 PF13808 DDE_Tnp_1-associated GO992_14635 PF01609 Transposase DDE domain GO992_14645 PF00696 Amino acid kinase family GO992_14650 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GO992_14650 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GO992_14655 PF03606 C4-dicarboxylate anaerobic carrier GO992_14660 PF02863 Arginine repressor, C-terminal domain GO992_14660 PF01316 Arginine repressor, DNA binding domain GO992_14665 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain GO992_14665 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain GO992_14670 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GO992_14670 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GO992_14685 PF02666 Phosphatidylserine decarboxylase GO992_14690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_14690 PF00672 HAMP domain GO992_14690 PF02743 Cache domain GO992_14695 PF08212 Lipocalin-like domain GO992_14705 PF00465 Iron-containing alcohol dehydrogenase GO992_14710 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch GO992_14710 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GO992_14710 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GO992_14715 PF02233 NAD(P) transhydrogenase beta subunit GO992_14725 PF13309 HTH domain GO992_14725 PF08348 YheO-like PAS domain GO992_14730 PF03313 Serine dehydratase alpha chain GO992_14735 PF00375 Sodium:dicarboxylate symporter family GO992_14740 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_14740 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO992_14745 PF13525 Outer membrane lipoprotein GO992_14750 PF01479 S4 domain GO992_14750 PF00849 RNA pseudouridylate synthase GO992_14760 PF10431 C-terminal, D2-small domain, of ClpB protein GO992_14760 PF02861 Clp amino terminal domain, pathogenicity island component GO992_14760 PF07724 AAA domain (Cdc48 subfamily) GO992_14760 PF00004 ATPase family associated with various cellular activities (AAA) GO992_14760 PF17871 AAA lid domain GO992_14765 PF03590 Aspartate-ammonia ligase GO992_14770 PF01037 Lrp/AsnC ligand binding domain GO992_14780 PF10063 Uncharacterized integral membrane protein (DUF2301) GO992_14785 PF00478 IMP dehydrogenase / GMP reductase domain GO992_14785 PF00571 CBS domain GO992_14805 PF00512 His Kinase A (phospho-acceptor) domain GO992_14805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_14815 PF00158 Sigma-54 interaction domain GO992_14815 PF00072 Response regulator receiver domain GO992_14820 PF06496 Protein of unknown function (DUF1097) GO992_14830 PF00174 Oxidoreductase molybdopterin binding domain GO992_14850 PF00486 Transcriptional regulatory protein, C terminal GO992_14850 PF00072 Response regulator receiver domain GO992_14855 PF08918 PhoQ Sensor GO992_14855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_14865 PF00384 Molybdopterin oxidoreductase GO992_14865 PF18364 Molybdopterin oxidoreductase N-terminal domain GO992_14865 PF01568 Molydopterin dinucleotide binding domain GO992_14870 PF03264 NapC/NirT cytochrome c family, N-terminal region GO992_14875 PF01751 Toprim domain GO992_14875 PF01131 DNA topoisomerase GO992_14880 PF02386 Cation transport protein GO992_14885 PF02080 TrkA-C domain GO992_14885 PF02254 TrkA-N domain GO992_14890 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GO992_14890 PF01565 FAD binding domain GO992_14895 PF02237 Biotin protein ligase C terminal domain GO992_14895 PF08279 HTH domain GO992_14895 PF03099 Biotin/lipoate A/B protein ligase family GO992_14900 PF00485 Phosphoribulokinase / Uridine kinase family GO992_14915 PF00009 Elongation factor Tu GTP binding domain GO992_14915 PF03143 Elongation factor Tu C-terminal domain GO992_14915 PF03144 Elongation factor Tu domain 2 GO992_14925 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GO992_14930 PF00467 KOW motif GO992_14930 PF02357 Transcription termination factor nusG GO992_14935 PF00298 Ribosomal protein L11, RNA binding domain GO992_14935 PF03946 Ribosomal protein L11, N-terminal domain GO992_14940 PF00687 Ribosomal protein L1p/L10e family GO992_14945 PF00466 Ribosomal protein L10 GO992_14950 PF00542 Ribosomal protein L7/L12 C-terminal domain GO992_14950 PF16320 Ribosomal protein L7/L12 dimerisation domain GO992_14955 PF04560 RNA polymerase Rpb2, domain 7 GO992_14955 PF04561 RNA polymerase Rpb2, domain 2 GO992_14955 PF04565 RNA polymerase Rpb2, domain 3 GO992_14955 PF04563 RNA polymerase beta subunit GO992_14955 PF10385 RNA polymerase beta subunit external 1 domain GO992_14955 PF00562 RNA polymerase Rpb2, domain 6 GO992_14960 PF04997 RNA polymerase Rpb1, domain 1 GO992_14960 PF05000 RNA polymerase Rpb1, domain 4 GO992_14960 PF04983 RNA polymerase Rpb1, domain 3 GO992_14960 PF04998 RNA polymerase Rpb1, domain 5 GO992_14960 PF00623 RNA polymerase Rpb1, domain 2 GO992_14965 PF08348 YheO-like PAS domain GO992_14965 PF13309 HTH domain GO992_14970 PF01042 Endoribonuclease L-PSP GO992_14975 PF02635 DsrE/DsrF-like family GO992_14980 PF02635 DsrE/DsrF-like family GO992_14985 PF04077 DsrH like protein GO992_14990 PF00164 Ribosomal protein S12/S23 GO992_14995 PF00177 Ribosomal protein S7p/S5e GO992_15000 PF03764 Elongation factor G, domain IV GO992_15000 PF14492 Elongation Factor G, domain II GO992_15000 PF00679 Elongation factor G C-terminus GO992_15000 PF03144 Elongation factor Tu domain 2 GO992_15000 PF00009 Elongation factor Tu GTP binding domain GO992_15005 PF03143 Elongation factor Tu C-terminal domain GO992_15005 PF03144 Elongation factor Tu domain 2 GO992_15005 PF00009 Elongation factor Tu GTP binding domain GO992_15070 PF03922 OmpW family GO992_15090 PF02219 Methylenetetrahydrofolate reductase GO992_15100 PF03594 Benzoate membrane transport protein GO992_15105 PF01381 Helix-turn-helix GO992_15105 PF07883 Cupin domain GO992_15135 PF04363 Protein of unknown function (DUF496) GO992_15145 PF04751 Protein of unknown function (DUF615) GO992_15150 PF01523 Putative modulator of DNA gyrase GO992_15155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GO992_15160 PF01722 BolA-like protein GO992_15170 PF05494 MlaC protein GO992_15175 PF02470 MlaD protein GO992_15180 PF02405 Permease MlaE GO992_15185 PF00005 ABC transporter GO992_15190 PF00571 CBS domain GO992_15190 PF01380 SIS domain GO992_15200 PF06835 Lipopolysaccharide-assembly, LptC-related GO992_15205 PF03968 OstA-like protein GO992_15210 PF00005 ABC transporter GO992_15210 PF12399 Branched-chain amino acid ATP-binding cassette transporter GO992_15215 PF00309 Sigma-54 factor, Activator interacting domain (AID) GO992_15215 PF04552 Sigma-54, DNA binding domain GO992_15215 PF04963 Sigma-54 factor, core binding domain GO992_15220 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GO992_15225 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO992_15230 PF03668 P-loop ATPase protein family GO992_15235 PF00381 PTS HPr component phosphorylation site GO992_15240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO992_15240 PF02378 Phosphotransferase system, EIIC GO992_15240 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO992_15245 PF07071 KDGP aldolase GO992_15250 PF03841 L-seryl-tRNA selenium transferase GO992_15255 PF01979 Amidohydrolase family GO992_15290 PF13180 PDZ domain GO992_15295 PF13180 PDZ domain GO992_15295 PF00595 PDZ domain GO992_15305 PF03969 AFG1-like ATPase GO992_15310 PF00572 Ribosomal protein L13 GO992_15315 PF00380 Ribosomal protein S9/S16 GO992_15320 PF00355 Rieske [2Fe-2S] domain GO992_15320 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GO992_15325 PF00032 Cytochrome b(C-terminal)/b6/petD GO992_15325 PF00033 Cytochrome b/b6/petB GO992_15330 PF02167 Cytochrome C1 family GO992_15335 PF00043 Glutathione S-transferase, C-terminal domain GO992_15335 PF02798 Glutathione S-transferase, N-terminal domain GO992_15340 PF04386 Stringent starvation protein B GO992_15345 PF04972 BON domain GO992_15350 PF13580 SIS domain GO992_15360 PF04348 LppC putative lipoprotein GO992_15365 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GO992_15380 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO992_15385 PF00813 FliP family GO992_15390 PF01313 Bacterial export proteins, family 3 GO992_15395 PF01311 Bacterial export proteins, family 1 GO992_15400 PF01312 FlhB HrpN YscU SpaS Family GO992_15405 PF00771 FHIPEP family GO992_15410 PF00158 Sigma-54 interaction domain GO992_15410 PF00072 Response regulator receiver domain GO992_15410 PF02954 Bacterial regulatory protein, Fis family GO992_15415 PF02049 Flagellar hook-basal body complex protein FliE GO992_15420 PF01514 Secretory protein of YscJ/FliF family GO992_15420 PF08345 Flagellar M-ring protein C-terminal GO992_15425 PF14841 FliG middle domain GO992_15425 PF01706 FliG C-terminal domain GO992_15425 PF14842 FliG N-terminal domain GO992_15440 PF18269 T3SS EscN ATPase C-terminal domain GO992_15440 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO992_15455 PF04316 Anti-sigma-28 factor, FlgM GO992_15465 PF00460 Flagella basal body rod protein GO992_15470 PF00460 Flagella basal body rod protein GO992_15470 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO992_15475 PF03963 Flagellar hook capping protein - N-terminal region GO992_15485 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO992_15485 PF00460 Flagella basal body rod protein GO992_15490 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO992_15490 PF00460 Flagella basal body rod protein GO992_15495 PF02107 Flagellar L-ring protein GO992_15500 PF02119 Flagellar P-ring protein GO992_15510 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO992_15510 PF00460 Flagella basal body rod protein GO992_15540 PF00700 Bacterial flagellin C-terminal helical region GO992_15540 PF00669 Bacterial flagellin N-terminal helical region GO992_15545 PF02465 Flagellar hook-associated protein 2 N-terminus GO992_15545 PF07195 Flagellar hook-associated protein 2 C-terminus GO992_15545 PF07196 Flagellin hook IN motif GO992_15550 PF02561 Flagellar protein FliS GO992_15570 PF04542 Sigma-70 region 2 GO992_15570 PF04545 Sigma-70, region 4 GO992_15575 PF01618 MotA/TolQ/ExbB proton channel family GO992_15580 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO992_15580 PF00691 OmpA family GO992_15585 PF01464 Transglycosylase SLT domain GO992_15585 PF01476 LysM domain GO992_15595 PF02381 MraZ protein, putative antitoxin-like GO992_15600 PF01795 MraW methylase family GO992_15605 PF04999 Cell division protein FtsL GO992_15610 PF00905 Penicillin binding protein transpeptidase domain GO992_15610 PF03717 Penicillin-binding Protein dimerisation domain GO992_15615 PF01225 Mur ligase family, catalytic domain GO992_15615 PF02875 Mur ligase family, glutamate ligase domain GO992_15615 PF08245 Mur ligase middle domain GO992_15620 PF01225 Mur ligase family, catalytic domain GO992_15620 PF08245 Mur ligase middle domain GO992_15620 PF02875 Mur ligase family, glutamate ligase domain GO992_15630 PF08245 Mur ligase middle domain GO992_15630 PF02875 Mur ligase family, glutamate ligase domain GO992_15635 PF01098 Cell cycle protein GO992_15640 PF03033 Glycosyltransferase family 28 N-terminal domain GO992_15640 PF04101 Glycosyltransferase family 28 C-terminal domain GO992_15645 PF01225 Mur ligase family, catalytic domain GO992_15645 PF08245 Mur ligase middle domain GO992_15645 PF02875 Mur ligase family, glutamate ligase domain GO992_15650 PF08478 POTRA domain, FtsQ-type GO992_15650 PF03799 Cell division protein FtsQ GO992_15655 PF02491 SHS2 domain inserted in FTSA GO992_15660 PF00091 Tubulin/FtsZ family, GTPase domain GO992_15660 PF12327 FtsZ family, C-terminal domain GO992_15665 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GO992_15675 PF02810 SEC-C motif GO992_15675 PF07517 SecA DEAD-like domain GO992_15675 PF01043 SecA preprotein cross-linking domain GO992_15675 PF07516 SecA Wing and Scaffold domain GO992_15685 PF00293 NUDIX domain GO992_15690 PF03884 DNA gyrase inhibitor YacG GO992_15695 PF07072 Cell division protein GO992_15700 PF01121 Dephospho-CoA kinase GO992_15705 PF06750 Bacterial Peptidase A24 N-terminal domain GO992_15705 PF01478 Type IV leader peptidase family GO992_15715 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GO992_15715 PF00437 Type II/IV secretion system protein GO992_15720 PF07963 Prokaryotic N-terminal methylation motif GO992_15725 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GO992_15725 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GO992_15735 PF01510 N-acetylmuramoyl-L-alanine amidase GO992_15740 PF00392 Bacterial regulatory proteins, gntR family GO992_15740 PF07729 FCD domain GO992_15745 PF00456 Transketolase, thiamine diphosphate binding domain GO992_15745 PF17831 Pyruvate dehydrogenase E1 component middle domain GO992_15750 PF00364 Biotin-requiring enzyme GO992_15750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO992_15750 PF02817 e3 binding domain GO992_15755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO992_15755 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_15760 PF08447 PAS fold GO992_15760 PF00990 Diguanylate cyclase, GGDEF domain GO992_15760 PF05231 MASE1 GO992_15760 PF00563 EAL domain GO992_15760 PF08448 PAS fold GO992_15760 PF13426 PAS domain GO992_15770 PF12729 Four helix bundle sensory module for signal transduction GO992_15770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_15770 PF00672 HAMP domain GO992_15775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_15775 PF12729 Four helix bundle sensory module for signal transduction GO992_15775 PF00672 HAMP domain GO992_15785 PF00330 Aconitase family (aconitate hydratase) GO992_15785 PF06434 Aconitate hydratase 2 N-terminus GO992_15785 PF11791 Aconitate B N-terminal domain GO992_15795 PF01609 Transposase DDE domain GO992_15795 PF13808 DDE_Tnp_1-associated GO992_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_15820 PF03466 LysR substrate binding domain GO992_15825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_15825 PF03466 LysR substrate binding domain GO992_15830 PF01810 LysE type translocator GO992_15840 PF07683 Cobalamin synthesis protein cobW C-terminal domain GO992_15840 PF02492 CobW/HypB/UreG, nucleotide-binding domain GO992_15865 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GO992_15870 PF02152 Dihydroneopterin aldolase GO992_15875 PF02660 Glycerol-3-phosphate acyltransferase GO992_15960 PF00999 Sodium/hydrogen exchanger family GO992_15970 PF18030 RimK PreATP-grasp domain GO992_15970 PF08443 RimK-like ATP-grasp domain GO992_15980 PF00486 Transcriptional regulatory protein, C terminal GO992_15980 PF00072 Response regulator receiver domain GO992_16015 PF08668 HDOD domain GO992_16025 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) GO992_16030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_16030 PF08447 PAS fold GO992_16030 PF13426 PAS domain GO992_16035 PF08678 Rsbr N terminal GO992_16035 PF01740 STAS domain GO992_16040 PF13581 Histidine kinase-like ATPase domain GO992_16045 PF00672 HAMP domain GO992_16045 PF00072 Response regulator receiver domain GO992_16045 PF01627 Hpt domain GO992_16045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_16045 PF00512 His Kinase A (phospho-acceptor) domain GO992_16045 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO992_16050 PF00072 Response regulator receiver domain GO992_16060 PF07690 Major Facilitator Superfamily GO992_16065 PF01914 MarC family integral membrane protein GO992_16075 PF01523 Putative modulator of DNA gyrase GO992_16080 PF00795 Carbon-nitrogen hydrolase GO992_16090 PF13116 Protein of unknown function GO992_16090 PF13502 AsmA-like C-terminal region GO992_16095 PF10150 Ribonuclease E/G family GO992_16095 PF00575 S1 RNA binding domain GO992_16100 PF02545 Maf-like protein GO992_16105 PF04093 rod shape-determining protein MreD GO992_16110 PF04085 rod shape-determining protein MreC GO992_16170 PF17157 Gammaproteobacterial periplasmic sensor domain GO992_16170 PF00563 EAL domain GO992_16170 PF00990 Diguanylate cyclase, GGDEF domain GO992_16180 PF01699 Sodium/calcium exchanger protein GO992_16185 PF00221 Aromatic amino acid lyase GO992_16190 PF01175 Urocanase Rossmann-like domain GO992_16190 PF17391 Urocanase N-terminal domain GO992_16190 PF17392 Urocanase C-terminal domain GO992_16195 PF00491 Arginase family GO992_16200 PF01979 Amidohydrolase family GO992_16205 PF00392 Bacterial regulatory proteins, gntR family GO992_16205 PF07702 UTRA domain GO992_16210 PF00484 Carbonic anhydrase GO992_16215 PF00140 Sigma-70 factor, region 1.2 GO992_16215 PF04545 Sigma-70, region 4 GO992_16215 PF04542 Sigma-70 region 2 GO992_16220 PF18075 FtsX extracellular domain GO992_16225 PF00005 ABC transporter GO992_16230 PF00448 SRP54-type protein, GTPase domain GO992_16230 PF02881 SRP54-type protein, helical bundle domain GO992_16255 PF00440 Bacterial regulatory proteins, tetR family GO992_16265 PF13091 PLD-like domain GO992_16270 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_16270 PF01464 Transglycosylase SLT domain GO992_16280 PF02416 mttA/Hcf106 family GO992_16285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_16285 PF03466 LysR substrate binding domain GO992_16290 PF01914 MarC family integral membrane protein GO992_16295 PF10678 Protein of unknown function (DUF2492) GO992_16300 PF00375 Sodium:dicarboxylate symporter family GO992_16310 PF03466 LysR substrate binding domain GO992_16310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_16315 PF13533 Biotin-lipoyl like GO992_16320 PF07690 Major Facilitator Superfamily GO992_16325 PF07947 YhhN family GO992_16350 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain GO992_16350 PF00326 Prolyl oligopeptidase family GO992_16365 PF02525 Flavodoxin-like fold GO992_16370 PF02254 TrkA-N domain GO992_16370 PF00999 Sodium/hydrogen exchanger family GO992_16425 PF00271 Helicase conserved C-terminal domain GO992_16425 PF00270 DEAD/DEAH box helicase GO992_16445 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase GO992_16465 PF00445 Ribonuclease T2 family GO992_16510 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain GO992_16510 PF00293 NUDIX domain GO992_16510 PF09297 NADH pyrophosphatase zinc ribbon domain GO992_16515 PF00672 HAMP domain GO992_16515 PF00512 His Kinase A (phospho-acceptor) domain GO992_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_16515 PF16527 Two-component sensor protein CpxA, periplasmic domain GO992_16520 PF00072 Response regulator receiver domain GO992_16520 PF00486 Transcriptional regulatory protein, C terminal GO992_16525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_16545 PF05170 AsmA family GO992_16560 PF01609 Transposase DDE domain GO992_16560 PF13808 DDE_Tnp_1-associated GO992_16575 PF03710 Glutamate-ammonia ligase adenylyltransferase GO992_16575 PF08335 GlnD PII-uridylyltransferase GO992_16600 PF13808 DDE_Tnp_1-associated GO992_16600 PF01609 Transposase DDE domain GO992_16605 PF00106 short chain dehydrogenase GO992_16620 PF08220 DeoR-like helix-turn-helix domain GO992_16620 PF00455 DeoR C terminal sensor domain GO992_16625 PF03710 Glutamate-ammonia ligase adenylyltransferase GO992_16625 PF08335 GlnD PII-uridylyltransferase GO992_16650 PF00293 NUDIX domain GO992_16655 PF00107 Zinc-binding dehydrogenase GO992_16655 PF16884 N-terminal domain of oxidoreductase GO992_16660 PF02566 OsmC-like protein GO992_16665 PF01047 MarR family GO992_16680 PF01037 Lrp/AsnC ligand binding domain GO992_16690 PF07690 Major Facilitator Superfamily GO992_16710 PF00209 Sodium:neurotransmitter symporter family GO992_16720 PF00209 Sodium:neurotransmitter symporter family GO992_16745 PF00392 Bacterial regulatory proteins, gntR family GO992_16745 PF00155 Aminotransferase class I and II GO992_16755 PF01810 LysE type translocator GO992_16760 PF01177 Asp/Glu/Hydantoin racemase GO992_16770 PF04074 YhcH/YjgK/YiaL GO992_16775 PF00871 Acetokinase family GO992_16780 PF00924 Mechanosensitive ion channel GO992_16785 PF03734 L,D-transpeptidase catalytic domain GO992_16785 PF17969 L,D-transpeptidase C-terminal domain GO992_16790 PF00474 Sodium:solute symporter family GO992_16800 PF13411 MerR HTH family regulatory protein GO992_16805 PF13808 DDE_Tnp_1-associated GO992_16805 PF01609 Transposase DDE domain GO992_16820 PF13808 DDE_Tnp_1-associated GO992_16820 PF01609 Transposase DDE domain GO992_16880 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GO992_16890 PF00005 ABC transporter GO992_16890 PF12848 ABC transporter GO992_16895 PF00571 CBS domain GO992_16895 PF01380 SIS domain GO992_16900 PF01957 NfeD-like C-terminal, partner-binding GO992_16905 PF16200 C-terminal region of band_7 GO992_16905 PF01145 SPFH domain / Band 7 family GO992_16915 PF01507 Phosphoadenosine phosphosulfate reductase family GO992_16920 PF00009 Elongation factor Tu GTP binding domain GO992_16925 PF02080 TrkA-C domain GO992_16925 PF03600 Citrate transporter GO992_16950 PF00872 Transposase, Mutator family GO992_16955 PF13808 DDE_Tnp_1-associated GO992_16955 PF01609 Transposase DDE domain GO992_16985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_16985 PF08447 PAS fold GO992_17005 PF00005 ABC transporter GO992_17020 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) GO992_17040 PF00480 ROK family GO992_17045 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GO992_17045 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GO992_17050 PF00162 Phosphoglycerate kinase GO992_17055 PF01116 Fructose-bisphosphate aldolase class-II GO992_17060 PF01266 FAD dependent oxidoreductase GO992_17070 PF02683 Cytochrome C biogenesis protein transmembrane region GO992_17070 PF11412 Disulphide bond corrector protein DsbC GO992_17075 PF03091 CutA1 divalent ion tolerance protein GO992_17095 PF01571 Aminomethyltransferase folate-binding domain GO992_17100 PF03937 Flavinator of succinate dehydrogenase GO992_17110 PF02910 Fumarate reductase flavoprotein C-term GO992_17110 PF00890 FAD binding domain GO992_17115 PF08281 Sigma-70, region 4 GO992_17115 PF04542 Sigma-70 region 2 GO992_17120 PF03872 Anti sigma-E protein RseA, N-terminal domain GO992_17120 PF03873 Anti sigma-E protein RseA, C-terminal domain GO992_17125 PF03888 MucB/RseB N-terminal domain GO992_17125 PF17188 MucB/RseB C-terminal domain GO992_17135 PF03144 Elongation factor Tu domain 2 GO992_17135 PF00009 Elongation factor Tu GTP binding domain GO992_17135 PF00679 Elongation factor G C-terminus GO992_17135 PF06421 GTP-binding protein LepA C-terminus GO992_17140 PF10502 Signal peptidase, peptidase S26 GO992_17145 PF14622 Ribonuclease-III-like GO992_17145 PF00035 Double-stranded RNA binding motif GO992_17150 PF07650 KH domain GO992_17150 PF01926 50S ribosome-binding GTPase GO992_17155 PF02565 Recombination protein O C terminal GO992_17155 PF11967 Recombination protein O N terminal GO992_17160 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GO992_17165 PF01510 N-acetylmuramoyl-L-alanine amidase GO992_17170 PF07308 Protein of unknown function (DUF1456) GO992_17175 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO992_17175 PF00072 Response regulator receiver domain GO992_17175 PF00512 His Kinase A (phospho-acceptor) domain GO992_17175 PF00672 HAMP domain GO992_17175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_17175 PF01627 Hpt domain GO992_17180 PF05958 tRNA (Uracil-5-)-methyltransferase GO992_17180 PF01938 TRAM domain GO992_17185 PF13291 ACT domain GO992_17185 PF04607 Region found in RelA / SpoT proteins GO992_17185 PF02824 TGS domain GO992_17190 PF03819 MazG nucleotide pyrophosphohydrolase domain GO992_17195 PF00117 Glutamine amidotransferase class-I GO992_17195 PF06418 CTP synthase N-terminus GO992_17200 PF00113 Enolase, C-terminal TIM barrel domain GO992_17200 PF03952 Enolase, N-terminal domain GO992_17205 PF04977 Septum formation initiator GO992_17210 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO992_17215 PF02542 YgbB family GO992_17220 PF01142 tRNA pseudouridine synthase D (TruD) GO992_17225 PF01975 Survival protein SurE GO992_17235 PF09335 SNARE associated Golgi protein GO992_17240 PF01476 LysM domain GO992_17240 PF01551 Peptidase family M23 GO992_17245 PF04545 Sigma-70, region 4 GO992_17245 PF04539 Sigma-70 region 3 GO992_17245 PF04542 Sigma-70 region 2 GO992_17245 PF00140 Sigma-70 factor, region 1.2 GO992_17250 PF00814 Glycoprotease family GO992_17255 PF01165 Ribosomal protein S21 GO992_17260 PF09424 Yqey-like protein GO992_17265 PF01807 CHC2 zinc finger GO992_17265 PF10410 DnaB-helicase binding domain of primase GO992_17265 PF08275 DNA primase catalytic core, N-terminal domain GO992_17265 PF08278 DNA primase DnaG DnaB-binding GO992_17270 PF03979 Sigma-70 factor, region 1.1 GO992_17270 PF00140 Sigma-70 factor, region 1.2 GO992_17270 PF04539 Sigma-70 region 3 GO992_17270 PF04545 Sigma-70, region 4 GO992_17270 PF04546 Sigma-70, non-essential region GO992_17270 PF04542 Sigma-70 region 2 GO992_17280 PF13358 DDE superfamily endonuclease GO992_17280 PF13592 Winged helix-turn helix GO992_17310 PF02843 Phosphoribosylglycinamide synthetase, C domain GO992_17310 PF02844 Phosphoribosylglycinamide synthetase, N domain GO992_17310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GO992_17315 PF01808 AICARFT/IMPCHase bienzyme GO992_17315 PF02142 MGS-like domain GO992_17320 PF13411 MerR HTH family regulatory protein GO992_17325 PF01872 RibD C-terminal domain GO992_17330 PF03889 Alternative ribosome-rescue factor A GO992_17335 PF06969 HemN C-terminal domain GO992_17335 PF04055 Radical SAM superfamily GO992_17340 PF01725 Ham1 family GO992_17350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GO992_17350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GO992_17365 PF13302 Acetyltransferase (GNAT) domain GO992_17370 PF13302 Acetyltransferase (GNAT) domain GO992_17375 PF07504 Fungalysin/Thermolysin Propeptide Motif GO992_17375 PF03413 Peptidase propeptide and YPEB domain GO992_17375 PF04151 Bacterial pre-peptidase C-terminal domain GO992_17375 PF02868 Thermolysin metallopeptidase, alpha-helical domain GO992_17375 PF01447 Thermolysin metallopeptidase, catalytic domain GO992_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_17380 PF03466 LysR substrate binding domain GO992_17385 PF07690 Major Facilitator Superfamily GO992_17390 PF00267 Gram-negative porin GO992_17395 PF03605 Anaerobic c4-dicarboxylate membrane transporter GO992_17400 PF00206 Lyase GO992_17400 PF10415 Fumarase C C-terminus GO992_17405 PF04186 FxsA cytoplasmic membrane protein GO992_17415 PF00166 Chaperonin 10 Kd subunit GO992_17420 PF00118 TCP-1/cpn60 chaperonin family GO992_17430 PF00563 EAL domain GO992_17430 PF13188 PAS domain GO992_17430 PF03707 Bacterial signalling protein N terminal repeat GO992_17430 PF00990 Diguanylate cyclase, GGDEF domain GO992_17440 PF00849 RNA pseudouridylate synthase GO992_17445 PF00271 Helicase conserved C-terminal domain GO992_17445 PF00176 SNF2 family N-terminal domain GO992_17445 PF18337 RapA N-terminal Tudor like domain GO992_17445 PF18339 RapA N-terminal Tudor like domain 1 GO992_17445 PF12137 RNA polymerase recycling family C-terminal GO992_17470 PF01810 LysE type translocator GO992_17475 PF02954 Bacterial regulatory protein, Fis family GO992_17480 PF01207 Dihydrouridine synthase (Dus) GO992_17485 PF02321 Outer membrane efflux protein GO992_17490 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_17520 PF00072 Response regulator receiver domain GO992_17525 PF00854 POT family GO992_17530 PF00483 Nucleotidyl transferase GO992_17540 PF00459 Inositol monophosphatase family GO992_17545 PF03795 YCII-related domain GO992_17550 PF04279 Intracellular septation protein A GO992_17555 PF00282 Pyridoxal-dependent decarboxylase conserved domain GO992_17560 PF03006 Haemolysin-III related GO992_17565 PF06826 Predicted Permease Membrane Region GO992_17565 PF02080 TrkA-C domain GO992_17575 PF01584 CheW-like domain GO992_17575 PF00072 Response regulator receiver domain GO992_17580 PF13472 GDSL-like Lipase/Acylhydrolase family GO992_17585 PF00005 ABC transporter GO992_17600 PF00563 EAL domain GO992_17600 PF12792 CSS motif domain associated with EAL GO992_17605 PF00155 Aminotransferase class I and II GO992_17610 PF01483 Proprotein convertase P-domain GO992_17610 PF04389 Peptidase family M28 GO992_17615 PF02390 Putative methyltransferase GO992_17620 PF04320 Protein with unknown function (DUF469) GO992_17630 PF00581 Rhodanese-like domain GO992_17635 PF06004 Bacterial protein of unknown function (DUF903) GO992_17640 PF00005 ABC transporter GO992_17640 PF00664 ABC transporter transmembrane region GO992_17645 PF00561 alpha/beta hydrolase fold GO992_17650 PF00171 Aldehyde dehydrogenase family GO992_17680 PF05547 Immune inhibitor A peptidase M6 GO992_17680 PF00801 PKD domain GO992_17685 PF06877 Regulator of ribonuclease activity B GO992_17690 PF03707 Bacterial signalling protein N terminal repeat GO992_17690 PF00563 EAL domain GO992_17690 PF00990 Diguanylate cyclase, GGDEF domain GO992_17710 PF09905 DNA-binding protein VF530 GO992_17715 PF02666 Phosphatidylserine decarboxylase GO992_17720 PF03193 RsgA GTPase GO992_17725 PF00929 Exonuclease GO992_17755 PF00313 'Cold-shock' DNA-binding domain GO992_17770 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO992_17810 PF06483 Chitinase C GO992_17810 PF00704 Glycosyl hydrolases family 18 GO992_17825 PF02472 Biopolymer transport protein ExbD/TolR GO992_17830 PF01618 MotA/TolQ/ExbB proton channel family GO992_17835 PF01618 MotA/TolQ/ExbB proton channel family GO992_17845 PF00593 TonB dependent receptor GO992_17845 PF07715 TonB-dependent Receptor Plug Domain GO992_17865 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_17865 PF00528 Binding-protein-dependent transport system inner membrane component GO992_17875 PF00005 ABC transporter GO992_17875 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_17880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_17880 PF00005 ABC transporter GO992_17890 PF07687 Peptidase dimerisation domain GO992_17890 PF01546 Peptidase family M20/M25/M40 GO992_17905 PF00156 Phosphoribosyl transferase domain GO992_17915 PF07417 Sigma factor-binding transcriptional regulator Crl GO992_17920 PF01472 PUA domain GO992_17920 PF00696 Amino acid kinase family GO992_17925 PF00171 Aldehyde dehydrogenase family GO992_17935 PF00582 Universal stress protein family GO992_17955 PF00294 pfkB family carbohydrate kinase GO992_17975 PF00034 Cytochrome c GO992_17975 PF03150 Di-haem cytochrome c peroxidase GO992_18015 PF00550 Phosphopantetheine attachment site GO992_18020 PF00550 Phosphopantetheine attachment site GO992_18030 PF13193 AMP-binding enzyme C-terminal domain GO992_18030 PF00501 AMP-binding enzyme GO992_18035 PF07977 FabA-like domain GO992_18045 PF00221 Aromatic amino acid lyase GO992_18070 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_18070 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_18085 PF00109 Beta-ketoacyl synthase, N-terminal domain GO992_18085 PF02801 Beta-ketoacyl synthase, C-terminal domain GO992_18095 PF00994 Probable molybdopterin binding domain GO992_18100 PF13592 Winged helix-turn helix GO992_18100 PF13358 DDE superfamily endonuclease GO992_18110 PF13808 DDE_Tnp_1-associated GO992_18110 PF01609 Transposase DDE domain GO992_18120 PF06738 Putative threonine/serine exporter GO992_18125 PF12821 Threonine/Serine exporter, ThrE GO992_18130 PF00186 Dihydrofolate reductase GO992_18135 PF00005 ABC transporter GO992_18135 PF00571 CBS domain GO992_18140 PF00528 Binding-protein-dependent transport system inner membrane component GO992_18145 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GO992_18150 PF01507 Phosphoadenosine phosphosulfate reductase family GO992_18155 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GO992_18155 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GO992_18160 PF00175 Oxidoreductase NAD-binding domain GO992_18160 PF00258 Flavodoxin GO992_18160 PF00667 FAD binding domain GO992_18165 PF02567 Phenazine biosynthesis-like protein GO992_18170 PF00152 tRNA synthetases class II (D, K and N) GO992_18170 PF01336 OB-fold nucleic acid binding domain GO992_18180 PF00672 HAMP domain GO992_18180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_18180 PF02743 Cache domain GO992_18185 PF03616 Sodium/glutamate symporter GO992_18190 PF17763 Glutaminase/Asparaginase C-terminal domain GO992_18190 PF00710 Asparaginase, N-terminal GO992_18195 PF07023 Protein of unknown function (DUF1315) GO992_18200 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GO992_18200 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GO992_18215 PF01343 Peptidase family S49 GO992_18220 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GO992_18220 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_18225 PF00881 Nitroreductase family GO992_18235 PF12464 Maltose acetyltransferase GO992_18235 PF14602 Hexapeptide repeat of succinyl-transferase GO992_18240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO992_18240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_18240 PF01842 ACT domain GO992_18245 PF05985 Ethanolamine ammonia-lyase light chain (EutC) GO992_18250 PF06751 Ethanolamine ammonia lyase large subunit (EutB) GO992_18255 PF13520 Amino acid permease GO992_18265 PF00107 Zinc-binding dehydrogenase GO992_18265 PF08240 Alcohol dehydrogenase GroES-like domain GO992_18275 PF03466 LysR substrate binding domain GO992_18275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_18280 PF02378 Phosphotransferase system, EIIC GO992_18280 PF00367 phosphotransferase system, EIIB GO992_18280 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GO992_18285 PF00474 Sodium:solute symporter family GO992_18290 PF06196 Protein of unknown function (DUF997) GO992_18295 PF02785 Biotin carboxylase C-terminal domain GO992_18295 PF00289 Biotin carboxylase, N-terminal domain GO992_18295 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GO992_18300 PF00364 Biotin-requiring enzyme GO992_18305 PF01220 Dehydroquinase class II GO992_18310 PF00501 AMP-binding enzyme GO992_18310 PF13193 AMP-binding enzyme C-terminal domain GO992_18310 PF16177 Acetyl-coenzyme A synthetase N-terminus GO992_18320 PF00563 EAL domain GO992_18320 PF00990 Diguanylate cyclase, GGDEF domain GO992_18320 PF03707 Bacterial signalling protein N terminal repeat GO992_18340 PF02613 Nitrate reductase delta subunit GO992_18350 PF00464 Serine hydroxymethyltransferase GO992_18365 PF03477 ATP cone domain GO992_18370 PF01872 RibD C-terminal domain GO992_18370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GO992_18375 PF00677 Lumazine binding domain GO992_18380 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GO992_18380 PF00925 GTP cyclohydrolase II GO992_18385 PF00885 6,7-dimethyl-8-ribityllumazine synthase GO992_18390 PF01029 NusB family GO992_18395 PF00586 AIR synthase related protein, N-terminal domain GO992_18395 PF02769 AIR synthase related protein, C-terminal domain GO992_18400 PF04608 Phosphatidylglycerophosphatase A GO992_18405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_18405 PF00005 ABC transporter GO992_18410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_18420 PF00528 Binding-protein-dependent transport system inner membrane component GO992_18420 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_18425 PF02780 Transketolase, C-terminal domain GO992_18425 PF02779 Transketolase, pyrimidine binding domain GO992_18425 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GO992_18430 PF00348 Polyprenyl synthetase GO992_18435 PF02609 Exonuclease VII small subunit GO992_18440 PF01618 MotA/TolQ/ExbB proton channel family GO992_18445 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO992_18445 PF00691 OmpA family GO992_18455 PF01272 Transcription elongation factor, GreA/GreB, C-term GO992_18455 PF03449 Transcription elongation factor, N-terminal GO992_18465 PF01985 CRS1 / YhbY (CRM) domain GO992_18470 PF01728 FtsJ-like methyltransferase GO992_18475 PF01434 Peptidase family M41 GO992_18475 PF06480 FtsH Extracellular GO992_18475 PF17862 AAA+ lid domain GO992_18475 PF00004 ATPase family associated with various cellular activities (AAA) GO992_18480 PF00809 Pterin binding enzyme GO992_18485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GO992_18485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GO992_18485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GO992_18485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GO992_18490 PF00121 Triosephosphate isomerase GO992_18495 PF03840 Preprotein translocase SecG subunit GO992_18510 PF17384 RimP C-terminal SH3 domain GO992_18510 PF02576 RimP N-terminal domain GO992_18515 PF13184 NusA-like KH domain GO992_18515 PF00575 S1 RNA binding domain GO992_18515 PF08529 NusA N-terminal domain GO992_18520 PF00009 Elongation factor Tu GTP binding domain GO992_18520 PF11987 Translation-initiation factor 2 GO992_18520 PF08364 Bacterial translation initiation factor IF-2 associated region GO992_18520 PF04760 Translation initiation factor IF-2, N-terminal region GO992_18525 PF02033 Ribosome-binding factor A GO992_18530 PF16198 tRNA pseudouridylate synthase B C-terminal domain GO992_18530 PF01509 TruB family pseudouridylate synthase (N terminal domain) GO992_18530 PF09157 Pseudouridine synthase II TruB, C-terminal GO992_18535 PF00312 Ribosomal protein S15 GO992_18540 PF03725 3' exoribonuclease family, domain 2 GO992_18540 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GO992_18540 PF01138 3' exoribonuclease family, domain 1 GO992_18540 PF00013 KH domain GO992_18540 PF00575 S1 RNA binding domain GO992_18545 PF07690 Major Facilitator Superfamily GO992_18550 PF00990 Diguanylate cyclase, GGDEF domain GO992_18555 PF02635 DsrE/DsrF-like family GO992_18560 PF06476 Protein of unknown function (DUF1090) GO992_18575 PF03575 Peptidase family S51 GO992_18610 PF02668 Taurine catabolism dioxygenase TauD, TfdA family GO992_18620 PF03734 L,D-transpeptidase catalytic domain GO992_18620 PF17969 L,D-transpeptidase C-terminal domain GO992_18630 PF01523 Putative modulator of DNA gyrase GO992_18635 PF01523 Putative modulator of DNA gyrase GO992_18640 PF00258 Flavodoxin GO992_18645 PF00589 Phage integrase family GO992_18645 PF02899 Phage integrase, N-terminal SAM-like domain GO992_18660 PF01741 Large-conductance mechanosensitive channel, MscL GO992_18665 PF13808 DDE_Tnp_1-associated GO992_18665 PF01609 Transposase DDE domain GO992_18675 PF17768 RecJ OB domain GO992_18675 PF02272 DHHA1 domain GO992_18675 PF01368 DHH family GO992_18685 PF02508 Rnf-Nqr subunit, membrane protein GO992_18690 PF06821 Serine hydrolase GO992_18695 PF13302 Acetyltransferase (GNAT) domain GO992_18760 PF01609 Transposase DDE domain GO992_18760 PF13808 DDE_Tnp_1-associated GO992_18785 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GO992_18785 PF04055 Radical SAM superfamily GO992_18790 PF03099 Biotin/lipoate A/B protein ligase family GO992_18795 PF04359 Protein of unknown function (DUF493) GO992_18800 PF07943 Penicillin-binding protein 5, C-terminal domain GO992_18800 PF00768 D-alanyl-D-alanine carboxypeptidase GO992_18805 PF05036 Sporulation related domain GO992_18805 PF03330 Lytic transglycolase GO992_18810 PF13406 Transglycosylase SLT domain GO992_18815 PF01098 Cell cycle protein GO992_18820 PF00905 Penicillin binding protein transpeptidase domain GO992_18820 PF03717 Penicillin-binding Protein dimerisation domain GO992_18825 PF02590 Predicted SPOUT methyltransferase GO992_18835 PF01467 Cytidylyltransferase-like GO992_18855 PF00133 tRNA synthetases class I (I, L, M and V) GO992_18855 PF13603 Leucyl-tRNA synthetase, Domain 2 GO992_18855 PF08264 Anticodon-binding domain of tRNA GO992_18860 PF07295 Zinc-ribbon containing domain GO992_18865 PF00795 Carbon-nitrogen hydrolase GO992_18870 PF03471 Transporter associated domain GO992_18870 PF00571 CBS domain GO992_18875 PF02130 Uncharacterized protein family UPF0054 GO992_18880 PF02562 PhoH-like protein GO992_18885 PF01938 TRAM domain GO992_18885 PF04055 Radical SAM superfamily GO992_18885 PF00919 Uncharacterized protein family UPF0004 GO992_18890 PF01494 FAD binding domain GO992_18895 PF00313 'Cold-shock' DNA-binding domain GO992_18900 PF05230 MASE2 domain GO992_18900 PF00990 Diguanylate cyclase, GGDEF domain GO992_18905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_18905 PF03466 LysR substrate binding domain GO992_18915 PF13419 Haloacid dehalogenase-like hydrolase GO992_18935 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO992_18935 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_18945 PF08207 Elongation factor P (EF-P) KOW-like domain GO992_18945 PF09285 Elongation factor P, C-terminal GO992_18945 PF01132 Elongation factor P (EF-P) OB domain GO992_18955 PF00478 IMP dehydrogenase / GMP reductase domain GO992_18965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_18965 PF00512 His Kinase A (phospho-acceptor) domain GO992_18965 PF08521 Two-component sensor kinase N-terminal GO992_18970 PF00072 Response regulator receiver domain GO992_18970 PF00486 Transcriptional regulatory protein, C terminal GO992_18990 PF00501 AMP-binding enzyme GO992_19005 PF06224 Winged helix DNA-binding domain GO992_19025 PF02313 Fumarate reductase subunit D GO992_19030 PF02300 Fumarate reductase subunit C GO992_19035 PF13085 2Fe-2S iron-sulfur cluster binding domain GO992_19035 PF13183 4Fe-4S dicluster domain GO992_19040 PF00890 FAD binding domain GO992_19040 PF02910 Fumarate reductase flavoprotein C-term GO992_19050 PF03009 Glycerophosphoryl diester phosphodiesterase family GO992_19055 PF00924 Mechanosensitive ion channel GO992_19055 PF12795 Mechanosensitive ion channel porin domain GO992_19055 PF12794 Mechanosensitive ion channel inner membrane domain 1 GO992_19060 PF13358 DDE superfamily endonuclease GO992_19060 PF13592 Winged helix-turn helix GO992_19070 PF01476 LysM domain GO992_19070 PF08525 Opacity-associated protein A N-terminal motif GO992_19070 PF01551 Peptidase family M23 GO992_19085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_19085 PF03466 LysR substrate binding domain GO992_19100 PF00672 HAMP domain GO992_19100 PF17200 Single Cache domain 2 GO992_19100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_19105 PF03466 LysR substrate binding domain GO992_19110 PF17092 Penicillin-binding protein OB-like domain GO992_19110 PF00905 Penicillin binding protein transpeptidase domain GO992_19110 PF00912 Transglycosylase GO992_19140 PF01202 Shikimate kinase GO992_19145 PF01761 3-dehydroquinate synthase GO992_19155 PF02086 D12 class N6 adenine-specific DNA methyltransferase GO992_19160 PF00834 Ribulose-phosphate 3 epimerase family GO992_19165 PF13419 Haloacid dehalogenase-like hydrolase GO992_19170 PF00579 tRNA synthetases class I (W and Y) GO992_19180 PF00117 Glutamine amidotransferase class-I GO992_19185 PF00202 Aminotransferase class-III GO992_19190 PF04958 Arginine N-succinyltransferase beta subunit GO992_19195 PF00171 Aldehyde dehydrogenase family GO992_19205 PF13419 Haloacid dehalogenase-like hydrolase GO992_19210 PF07690 Major Facilitator Superfamily GO992_19230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GO992_19230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GO992_19230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GO992_19235 PF06794 Uncharacterised protein family (UPF0270) GO992_19255 PF00561 alpha/beta hydrolase fold GO992_19260 PF00072 Response regulator receiver domain GO992_19260 PF01584 CheW-like domain GO992_19270 PF09526 Probable metal-binding protein (DUF2387) GO992_19275 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_19280 PF04102 SlyX GO992_19290 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO992_19290 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_19295 PF02954 Bacterial regulatory protein, Fis family GO992_19295 PF00072 Response regulator receiver domain GO992_19295 PF00158 Sigma-54 interaction domain GO992_19315 PF02872 5'-nucleotidase, C-terminal domain GO992_19315 PF00149 Calcineurin-like phosphoesterase GO992_19320 PF12792 CSS motif domain associated with EAL GO992_19320 PF00563 EAL domain GO992_19335 PF03796 DnaB-like helicase C terminal domain GO992_19335 PF00772 DnaB-like helicase N terminal domain GO992_19340 PF00772 DnaB-like helicase N terminal domain GO992_19340 PF03796 DnaB-like helicase C terminal domain GO992_19345 PF00842 Alanine racemase, C-terminal domain GO992_19345 PF01168 Alanine racemase, N-terminal domain GO992_19350 PF12838 4Fe-4S dicluster domain GO992_19360 PF00563 EAL domain GO992_19360 PF01590 GAF domain GO992_19360 PF00990 Diguanylate cyclase, GGDEF domain GO992_19360 PF00989 PAS fold GO992_19365 PF01609 Transposase DDE domain GO992_19365 PF13808 DDE_Tnp_1-associated GO992_19380 PF13808 DDE_Tnp_1-associated GO992_19380 PF01609 Transposase DDE domain GO992_19410 PF00106 short chain dehydrogenase GO992_19435 PF02074 Carboxypeptidase Taq (M32) metallopeptidase GO992_19445 PF02805 Metal binding domain of Ada GO992_19445 PF06029 AlkA N-terminal domain GO992_19445 PF00730 HhH-GPD superfamily base excision DNA repair protein GO992_19445 PF12833 Helix-turn-helix domain GO992_19450 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GO992_19450 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GO992_19455 PF01209 ubiE/COQ5 methyltransferase family GO992_19460 PF06906 Protein of unknown function (DUF1272) GO992_19475 PF01810 LysE type translocator GO992_19480 PF03466 LysR substrate binding domain GO992_19480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_19485 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO992_19485 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO992_19490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_19490 PF00672 HAMP domain GO992_19490 PF02743 Cache domain GO992_19505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_19505 PF01627 Hpt domain GO992_19505 PF01584 CheW-like domain GO992_19505 PF02895 Signal transducing histidine kinase, homodimeric domain GO992_19515 PF01584 CheW-like domain GO992_19520 PF00672 HAMP domain GO992_19520 PF02203 Tar ligand binding domain homologue GO992_19520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_19540 PF03975 CheD chemotactic sensory transduction GO992_19545 PF00072 Response regulator receiver domain GO992_19545 PF01339 CheB methylesterase GO992_19550 PF00266 Aminotransferase class-V GO992_19575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO992_19575 PF01627 Hpt domain GO992_19575 PF00672 HAMP domain GO992_19575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_19575 PF00512 His Kinase A (phospho-acceptor) domain GO992_19575 PF00072 Response regulator receiver domain GO992_19585 PF03573 outer membrane porin, OprD family GO992_19590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_19600 PF07995 Glucose / Sorbosone dehydrogenase GO992_19625 PF01817 Chorismate mutase type II GO992_19625 PF00800 Prephenate dehydratase GO992_19655 PF08349 Protein of unknown function (DUF1722) GO992_19660 PF13411 MerR HTH family regulatory protein GO992_19665 PF03441 FAD binding domain of DNA photolyase GO992_19665 PF00875 DNA photolyase GO992_19675 PF00106 short chain dehydrogenase GO992_19715 PF00210 Ferritin-like domain GO992_19720 PF03063 Prismane/CO dehydrogenase family GO992_19725 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_19725 PF00175 Oxidoreductase NAD-binding domain GO992_19725 PF00970 Oxidoreductase FAD-binding domain GO992_19730 PF16363 GDP-mannose 4,6 dehydratase GO992_19735 PF06965 Na+/H+ antiporter 1 GO992_19735 PF13462 Thioredoxin GO992_19750 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain GO992_19750 PF06165 Glycosyltransferase family 36 GO992_19750 PF10091 Putative glucoamylase GO992_19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_19755 PF03466 LysR substrate binding domain GO992_19760 PF03306 Alpha-acetolactate decarboxylase GO992_19765 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO992_19765 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO992_19765 PF00205 Thiamine pyrophosphate enzyme, central domain GO992_19770 PF01965 DJ-1/PfpI family GO992_19775 PF08546 Ketopantoate reductase PanE/ApbA C terminal GO992_19775 PF02558 Ketopantoate reductase PanE/ApbA GO992_19780 PF04461 Protein of unknown function (DUF520) GO992_19785 PF03502 Nucleoside-specific channel-forming protein, Tsx GO992_19790 PF07690 Major Facilitator Superfamily GO992_19800 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GO992_19810 PF05175 Methyltransferase small domain GO992_19815 PF01722 BolA-like protein GO992_19825 PF11973 NQRA C-terminal domain GO992_19825 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GO992_19830 PF03116 NQR2, RnfD, RnfE family GO992_19835 PF04205 FMN-binding domain GO992_19840 PF02508 Rnf-Nqr subunit, membrane protein GO992_19845 PF02508 Rnf-Nqr subunit, membrane protein GO992_19850 PF00970 Oxidoreductase FAD-binding domain GO992_19850 PF00175 Oxidoreductase NAD-binding domain GO992_19850 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_19855 PF02424 ApbE family GO992_19870 PF11799 impB/mucB/samB family C-terminal domain GO992_19870 PF11798 IMS family HHH motif GO992_19870 PF00817 impB/mucB/samB family GO992_19875 PF00672 HAMP domain GO992_19875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_19880 PF03466 LysR substrate binding domain GO992_19880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_19890 PF04241 Protein of unknown function (DUF423) GO992_19895 PF01728 FtsJ-like methyltransferase GO992_19895 PF18125 RlmM ferredoxin-like domain GO992_19905 PF18324 Hypothetical protein TT1725 GO992_19905 PF00180 Isocitrate/isopropylmalate dehydrogenase GO992_19910 PF01367 5'-3' exonuclease, C-terminal SAM fold GO992_19910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GO992_19915 PF11892 Domain of unknown function (DUF3412) GO992_19915 PF03641 Possible lysine decarboxylase GO992_19915 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GO992_19920 PF07694 5TMR of 5TMR-LYT GO992_19920 PF00990 Diguanylate cyclase, GGDEF domain GO992_19930 PF14489 QueF-like protein GO992_19930 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GO992_19935 PF07348 Syd protein (SUKH-2) GO992_19940 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) GO992_19965 PF04287 tRNA pseudouridine synthase C GO992_19970 PF00849 RNA pseudouridylate synthase GO992_19975 PF00258 Flavodoxin GO992_19980 PF02264 LamB porin GO992_19985 PF07148 Maltose operon periplasmic protein precursor (MalM) GO992_19990 PF00367 phosphotransferase system, EIIB GO992_19990 PF02378 Phosphotransferase system, EIIC GO992_19995 PF11944 Protein of unknown function (DUF3461) GO992_20000 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_20000 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal GO992_20000 PF14602 Hexapeptide repeat of succinyl-transferase GO992_20005 PF01842 ACT domain GO992_20005 PF01909 Nucleotidyltransferase domain GO992_20005 PF01966 HD domain GO992_20005 PF08335 GlnD PII-uridylyltransferase GO992_20010 PF00557 Metallopeptidase family M24 GO992_20015 PF00318 Ribosomal protein S2 GO992_20020 PF00889 Elongation factor TS GO992_20025 PF00696 Amino acid kinase family GO992_20030 PF01765 Ribosome recycling factor GO992_20035 PF01255 Putative undecaprenyl diphosphate synthase GO992_20045 PF13288 DXP reductoisomerase C-terminal domain GO992_20045 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO992_20045 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GO992_20050 PF17820 PDZ domain GO992_20050 PF02163 Peptidase family M50 GO992_20055 PF07244 Surface antigen variable number repeat GO992_20055 PF01103 Surface antigen GO992_20060 PF03938 Outer membrane protein (OmpH-like) GO992_20065 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GO992_20065 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_20070 PF07977 FabA-like domain GO992_20075 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GO992_20075 PF00132 Bacterial transferase hexapeptide (six repeats) GO992_20080 PF02684 Lipid-A-disaccharide synthetase GO992_20085 PF01351 Ribonuclease HII GO992_20090 PF02811 PHP domain GO992_20090 PF14579 Helix-hairpin-helix motif GO992_20090 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GO992_20090 PF07733 Bacterial DNA polymerase III alpha NTPase domain GO992_20090 PF01336 OB-fold nucleic acid binding domain GO992_20095 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GO992_20100 PF00486 Transcriptional regulatory protein, C terminal GO992_20100 PF18500 CadC C-terminal domain 1 GO992_20105 PF13520 Amino acid permease GO992_20110 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain GO992_20110 PF01276 Orn/Lys/Arg decarboxylase, major domain GO992_20110 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GO992_20115 PF08543 Phosphomethylpyrimidine kinase GO992_20125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_20125 PF03466 LysR substrate binding domain GO992_20135 PF13520 Amino acid permease GO992_20140 PF13302 Acetyltransferase (GNAT) domain GO992_20145 PF12848 ABC transporter GO992_20145 PF16326 ABC transporter C-terminal domain GO992_20145 PF00005 ABC transporter GO992_20155 PF01431 Peptidase family M13 GO992_20155 PF05649 Peptidase family M13 GO992_20160 PF11734 TilS substrate C-terminal domain GO992_20160 PF09179 TilS substrate binding domain GO992_20160 PF01171 PP-loop family GO992_20165 PF00990 Diguanylate cyclase, GGDEF domain GO992_20170 PF02080 TrkA-C domain GO992_20170 PF00999 Sodium/hydrogen exchanger family GO992_20170 PF02254 TrkA-N domain GO992_20210 PF00196 Bacterial regulatory proteins, luxR family GO992_20210 PF00072 Response regulator receiver domain GO992_20220 PF00128 Alpha amylase, catalytic domain GO992_20240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_20240 PF03466 LysR substrate binding domain GO992_20250 PF00155 Aminotransferase class I and II GO992_20255 PF07690 Major Facilitator Superfamily GO992_20260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_20260 PF03466 LysR substrate binding domain GO992_20265 PF00106 short chain dehydrogenase GO992_20270 PF01343 Peptidase family S49 GO992_20270 PF08496 Peptidase family S49 N-terminal GO992_20275 PF04996 Succinylarginine dihydrolase GO992_20280 PF01396 Topoisomerase DNA binding C4 zinc finger GO992_20280 PF01751 Toprim domain GO992_20280 PF01131 DNA topoisomerase GO992_20280 PF08272 Topoisomerase I zinc-ribbon-like GO992_20290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_20290 PF08447 PAS fold GO992_20295 PF02838 Glycosyl hydrolase family 20, domain 2 GO992_20295 PF00728 Glycosyl hydrolase family 20, catalytic domain GO992_20300 PF01869 BadF/BadG/BcrA/BcrD ATPase family GO992_20310 PF00005 ABC transporter GO992_20310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_20315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_20315 PF00005 ABC transporter GO992_20320 PF00528 Binding-protein-dependent transport system inner membrane component GO992_20320 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_20325 PF00528 Binding-protein-dependent transport system inner membrane component GO992_20330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_20355 PF10725 Protein of unknown function (DUF2517) GO992_20365 PF08447 PAS fold GO992_20365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_20365 PF13426 PAS domain GO992_20375 PF04632 Fusaric acid resistance protein family GO992_20380 PF03453 MoeA N-terminal region (domain I and II) GO992_20380 PF00994 Probable molybdopterin binding domain GO992_20380 PF03454 MoeA C-terminal region (domain IV) GO992_20385 PF12804 MobA-like NTP transferase domain GO992_20390 PF00005 ABC transporter GO992_20395 PF00528 Binding-protein-dependent transport system inner membrane component GO992_20400 PF12849 PBP superfamily domain GO992_20410 PF00989 PAS fold GO992_20410 PF00512 His Kinase A (phospho-acceptor) domain GO992_20410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_20420 PF02634 FdhD/NarQ family GO992_20425 PF00872 Transposase, Mutator family GO992_20470 PF00589 Phage integrase family GO992_20470 PF13356 Arm DNA-binding domain GO992_20480 PF01668 SmpB protein GO992_20490 PF03364 Polyketide cyclase / dehydrase and lipid transport GO992_20500 PF13460 NAD(P)H-binding GO992_20505 PF04355 SmpA / OmlA family GO992_20535 PF04972 BON domain GO992_20535 PF13629 Pilus formation protein N terminal region GO992_20535 PF00263 Bacterial type II and III secretion system protein GO992_20545 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GO992_20550 PF00437 Type II/IV secretion system protein GO992_20585 PF00465 Iron-containing alcohol dehydrogenase GO992_20590 PF01048 Phosphorylase superfamily GO992_20595 PF00849 RNA pseudouridylate synthase GO992_20600 PF01156 Inosine-uridine preferring nucleoside hydrolase GO992_20615 PF07509 Protein of unknown function (DUF1523) GO992_20620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_20620 PF12729 Four helix bundle sensory module for signal transduction GO992_20620 PF00672 HAMP domain GO992_20625 PF01810 LysE type translocator GO992_20650 PF03471 Transporter associated domain GO992_20650 PF00999 Sodium/hydrogen exchanger family GO992_20650 PF02080 TrkA-C domain GO992_20660 PF03471 Transporter associated domain GO992_20660 PF02080 TrkA-C domain GO992_20660 PF00999 Sodium/hydrogen exchanger family GO992_20670 PF02557 D-alanyl-D-alanine carboxypeptidase GO992_20675 PF07687 Peptidase dimerisation domain GO992_20675 PF01546 Peptidase family M20/M25/M40 GO992_20680 PF03960 ArsC family GO992_20685 PF03466 LysR substrate binding domain GO992_20685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_20700 PF03605 Anaerobic c4-dicarboxylate membrane transporter GO992_20705 PF00152 tRNA synthetases class II (D, K and N) GO992_20705 PF01336 OB-fold nucleic acid binding domain GO992_20720 PF00202 Aminotransferase class-III GO992_20725 PF06968 Biotin and Thiamin Synthesis associated domain GO992_20725 PF04055 Radical SAM superfamily GO992_20730 PF00155 Aminotransferase class I and II GO992_20735 PF12697 Alpha/beta hydrolase family GO992_20735 PF08241 Methyltransferase domain GO992_20745 PF01435 Peptidase family M48 GO992_20750 PF08447 PAS fold GO992_20750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_20750 PF13426 PAS domain GO992_20755 PF03476 MOSC N-terminal beta barrel domain GO992_20755 PF03473 MOSC domain GO992_20755 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_20755 PF03476 MOSC N-terminal beta barrel domain GO992_20755 PF03473 MOSC domain GO992_20755 PF00111 2Fe-2S iron-sulfur cluster binding domain GO992_20760 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_20760 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region GO992_20760 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GO992_20780 PF04325 Protein of unknown function (DUF465) GO992_20790 PF01554 MatE GO992_20795 PF01740 STAS domain GO992_20795 PF00916 Sulfate permease family GO992_20810 PF00291 Pyridoxal-phosphate dependent enzyme GO992_20820 PF00465 Iron-containing alcohol dehydrogenase GO992_20830 PF17932 Tetracyclin repressor-like, C-terminal domain GO992_20830 PF00440 Bacterial regulatory proteins, tetR family GO992_20835 PF00171 Aldehyde dehydrogenase family GO992_20845 PF00877 NlpC/P60 family GO992_20860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO992_20860 PF03466 LysR substrate binding domain GO992_20865 PF13592 Winged helix-turn helix GO992_20865 PF13358 DDE superfamily endonuclease GO992_20870 PF02895 Signal transducing histidine kinase, homodimeric domain GO992_20870 PF07194 P2 response regulator binding domain GO992_20870 PF01627 Hpt domain GO992_20870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_20870 PF01584 CheW-like domain GO992_20875 PF01339 CheB methylesterase GO992_20875 PF00072 Response regulator receiver domain GO992_20880 PF01618 MotA/TolQ/ExbB proton channel family GO992_20885 PF00691 OmpA family GO992_20885 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO992_20890 PF13614 AAA domain GO992_20900 PF01584 CheW-like domain GO992_20915 PF00005 ABC transporter GO992_20920 PF03379 CcmB protein GO992_20925 PF01578 Cytochrome C assembly protein GO992_20930 PF04995 Heme exporter protein D (CcmD) GO992_20935 PF03100 CcmE GO992_20940 PF01578 Cytochrome C assembly protein GO992_20940 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GO992_20945 PF08534 Redoxin GO992_20950 PF03918 Cytochrome C biogenesis protein GO992_20960 PF04333 MlaA lipoprotein GO992_20965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GO992_20965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GO992_20970 PF00462 Glutaredoxin GO992_20975 PF01029 NusB family GO992_20975 PF01189 16S rRNA methyltransferase RsmB/F GO992_20990 PF01243 Pyridoxamine 5'-phosphate oxidase GO992_20990 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GO992_20995 PF13417 Glutathione S-transferase, N-terminal domain GO992_21005 PF13508 Acetyltransferase (GNAT) domain GO992_21025 PF08007 Cupin superfamily protein GO992_21030 PF08328 Adenylosuccinate lyase C-terminal GO992_21030 PF00206 Lyase GO992_21035 PF04356 Protein of unknown function (DUF489) GO992_21045 PF00293 NUDIX domain GO992_21050 PF00849 RNA pseudouridylate synthase GO992_21060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO992_21065 PF07690 Major Facilitator Superfamily GO992_21135 PF01169 Uncharacterized protein family UPF0016 GO992_21140 PF01253 Translation initiation factor SUI1 GO992_21150 PF07664 Ferrous iron transport protein B C terminus GO992_21150 PF02421 Ferrous iron transport protein B GO992_21150 PF07670 Nucleoside recognition GO992_21175 PF00483 Nucleotidyl transferase GO992_21180 PF00437 Type II/IV secretion system protein GO992_21190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO992_21190 PF00512 His Kinase A (phospho-acceptor) domain GO992_21190 PF01627 Hpt domain GO992_21190 PF00989 PAS fold GO992_21190 PF00072 Response regulator receiver domain GO992_21190 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_21195 PF01032 FecCD transport family GO992_21200 PF00005 ABC transporter GO992_21205 PF00793 DAHP synthetase I family GO992_21210 PF01219 Prokaryotic diacylglycerol kinase GO992_21215 PF01842 ACT domain GO992_21215 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO992_21215 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO992_21220 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GO992_21225 PF01812 5-formyltetrahydrofolate cyclo-ligase family GO992_21240 PF01113 Dihydrodipicolinate reductase, N-terminus GO992_21240 PF05173 Dihydrodipicolinate reductase, C-terminus GO992_21245 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GO992_21245 PF00117 Glutamine amidotransferase class-I GO992_21250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GO992_21250 PF02142 MGS-like domain GO992_21250 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GO992_21255 PF00682 HMGL-like GO992_21255 PF08502 LeuA allosteric (dimerisation) domain GO992_21280 PF08378 Nuclease-related domain GO992_21295 PF13302 Acetyltransferase (GNAT) domain GO992_21300 PF00271 Helicase conserved C-terminal domain GO992_21300 PF00270 DEAD/DEAH box helicase GO992_21330 PF09278 MerR, DNA binding GO992_21330 PF00376 MerR family regulatory protein GO992_21345 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO992_21345 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GO992_21350 PF01493 GXGXG motif GO992_21350 PF01645 Conserved region in glutamate synthase GO992_21350 PF04898 Glutamate synthase central domain GO992_21350 PF00310 Glutamine amidotransferases class-II GO992_21355 PF04055 Radical SAM superfamily GO992_21355 PF16199 Radical_SAM C-terminal domain GO992_21360 PF03412 Peptidase C39 family GO992_21360 PF00005 ABC transporter GO992_21360 PF00664 ABC transporter transmembrane region GO992_21395 PF01609 Transposase DDE domain GO992_21395 PF13808 DDE_Tnp_1-associated GO992_21430 PF12241 Trans-2-enoyl-CoA reductase catalytic region GO992_21430 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GO992_21430 PF07055 Enoyl reductase FAD binding domain GO992_21435 PF03606 C4-dicarboxylate anaerobic carrier GO992_21450 PF00462 Glutaredoxin GO992_21455 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family GO992_21460 PF04851 Type III restriction enzyme, res subunit GO992_21460 PF00271 Helicase conserved C-terminal domain GO992_21465 PF00529 HlyD membrane-fusion protein of T1SS GO992_21465 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO992_21470 PF11742 Protein of unknown function (DUF3302) GO992_21475 PF02554 Carbon starvation protein CstA GO992_21480 PF00072 Response regulator receiver domain GO992_21480 PF04397 LytTr DNA-binding domain GO992_21485 PF07694 5TMR of 5TMR-LYT GO992_21485 PF06580 Histidine kinase GO992_21505 PF00171 Aldehyde dehydrogenase family GO992_21505 PF00465 Iron-containing alcohol dehydrogenase GO992_21515 PF01914 MarC family integral membrane protein GO992_21520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_21525 PF00528 Binding-protein-dependent transport system inner membrane component GO992_21530 PF12911 N-terminal TM domain of oligopeptide transport permease C GO992_21530 PF00528 Binding-protein-dependent transport system inner membrane component GO992_21535 PF00005 ABC transporter GO992_21535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_21545 PF00005 ABC transporter GO992_21545 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO992_21550 PF03741 Integral membrane protein TerC family GO992_21565 PF01168 Alanine racemase, N-terminal domain GO992_21565 PF00842 Alanine racemase, C-terminal domain GO992_21575 PF00375 Sodium:dicarboxylate symporter family GO992_21590 PF01979 Amidohydrolase family GO992_21600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO992_21600 PF00672 HAMP domain GO992_21605 PF01230 HIT domain GO992_21640 PF13721 SecD export protein N-terminal TM region GO992_21640 PF02355 Protein export membrane protein GO992_21640 PF07549 SecD/SecF GG Motif GO992_21645 PF07549 SecD/SecF GG Motif GO992_21645 PF02355 Protein export membrane protein GO992_21680 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GO992_21685 PF00691 OmpA family GO992_21685 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO992_21705 PF04536 TPM domain GO992_21715 PF03411 Penicillin-insensitive murein endopeptidase GO992_21720 PF00528 Binding-protein-dependent transport system inner membrane component GO992_21725 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO992_21730 PF00528 Binding-protein-dependent transport system inner membrane component GO992_21755 PF00571 CBS domain GO992_21755 PF00478 IMP dehydrogenase / GMP reductase domain GO992_21760 PF02540 NAD synthase GO992_21760 PF00958 GMP synthase C terminal domain GO992_21760 PF00117 Glutamine amidotransferase class-I GO992_21780 PF13808 DDE_Tnp_1-associated GO992_21780 PF01609 Transposase DDE domain GO992_21795 PF05724 Thiopurine S-methyltransferase (TPMT) GO992_21800 PF16187 Middle or third domain of peptidase_M16 GO992_21800 PF00675 Insulinase (Peptidase family M16) GO992_21800 PF05193 Peptidase M16 inactive domain GO992_21805 PF00300 Histidine phosphatase superfamily (branch 1) GO992_21815 PF00892 EamA-like transporter family GO992_21820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO992_21825 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GO992_21830 PF02559 CarD-like/TRCF domain GO992_21830 PF17757 UvrB interaction domain GO992_21830 PF03461 TRCF domain GO992_21830 PF00270 DEAD/DEAH box helicase GO992_21830 PF00271 Helicase conserved C-terminal domain GO992_21840 PF12704 MacB-like periplasmic core domain GO992_21840 PF02687 FtsX-like permease family GO992_21845 PF00005 ABC transporter GO992_21850 PF02687 FtsX-like permease family GO992_21850 PF12704 MacB-like periplasmic core domain GO992_21865 PF05698 Bacterial trigger factor protein (TF) C-terminus GO992_21865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO992_21865 PF05697 Bacterial trigger factor protein (TF) GO992_21870 PF00574 Clp protease GO992_21875 PF06689 ClpX C4-type zinc finger GO992_21875 PF10431 C-terminal, D2-small domain, of ClpB protein GO992_21875 PF07724 AAA domain (Cdc48 subfamily) GO992_21880 PF00004 ATPase family associated with various cellular activities (AAA) GO992_21880 PF05362 Lon protease (S16) C-terminal proteolytic domain GO992_21880 PF02190 ATP-dependent protease La (LON) substrate-binding domain GO992_21885 PF00216 Bacterial DNA-binding protein GO992_21890 PF13145 PPIC-type PPIASE domain GO992_21895 PF00005 ABC transporter GO992_21895 PF12848 ABC transporter GO992_21900 PF00474 Sodium:solute symporter family GO992_21905 PF04341 Protein of unknown function, DUF485 GO992_21930 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GO992_21930 PF00378 Enoyl-CoA hydratase/isomerase GO992_21930 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GO992_21935 PF01235 Sodium:alanine symporter family GO992_21940 PF00583 Acetyltransferase (GNAT) family GO992_21950 PF01184 GPR1/FUN34/yaaH family GO992_21985 PF05724 Thiopurine S-methyltransferase (TPMT) GO992_21995 PF00300 Histidine phosphatase superfamily (branch 1) GO992_22045 PF00816 H-NS histone family GO992_22055 PF13614 AAA domain GO992_22065 PF00872 Transposase, Mutator family GO992_22100 PF02371 Transposase IS116/IS110/IS902 family GO992_22100 PF01548 Transposase GO992_22110 PF02108 Flagellar assembly protein FliH GO992_22115 PF06578 YOP proteins translocation protein K (YscK) GO992_22120 PF01514 Secretory protein of YscJ/FliF family GO992_22125 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI GO992_22130 PF09025 YopR, type III needle-polymerisation regulator GO992_22135 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) GO992_22140 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF GO992_22150 PF16697 Inner membrane component of T3SS, cytoplasmic domain GO992_22150 PF16693 Inner membrane component of T3SS, periplasmic domain GO992_22160 PF05932 Tir chaperone protein (CesT) family GO992_22170 PF12833 Helix-turn-helix domain GO992_22185 PF05932 Tir chaperone protein (CesT) family GO992_22190 PF05844 YopD protein GO992_22195 PF04888 Secretion system effector C (SseC) like family GO992_22200 PF07720 Tetratricopeptide repeat GO992_22205 PF04792 V antigen (LcrV) protein GO992_22210 PF07216 LcrG protein GO992_22215 PF09621 Type III secretion system regulator (LcrR) GO992_22220 PF00771 FHIPEP family GO992_22230 PF09474 Type III secretion system YscX (type_III_YscX) GO992_22240 PF09059 TyeA GO992_22245 PF07201 HrpJ-like domain GO992_22250 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO992_22250 PF18269 T3SS EscN ATPase C-terminal domain GO992_22250 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO992_22270 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO992_22275 PF00813 FliP family GO992_22280 PF01313 Bacterial export proteins, family 3 GO992_22285 PF01311 Bacterial export proteins, family 1 GO992_22290 PF01312 FlhB HrpN YscU SpaS Family GO992_22315 PF00561 alpha/beta hydrolase fold GO992_22330 PF13614 AAA domain GO992_22385 PF01848 Hok/gef family GO992_22405 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GO992_22450 PF02796 Helix-turn-helix domain of resolvase GO992_22450 PF00239 Resolvase, N terminal domain GO992_22465 PF01695 IstB-like ATP binding protein GO992_22480 PF01848 Hok/gef family GO992_22520 PF00816 H-NS histone family GO992_22530 PF13614 AAA domain GO992_22540 PF00872 Transposase, Mutator family GO992_22585 PF00816 H-NS histone family GO992_22595 PF13614 AAA domain GO992_22605 PF00872 Transposase, Mutator family GO992_22655 PF06578 YOP proteins translocation protein K (YscK)