locus-tag class description GO993_00060 PF02472 Biopolymer transport protein ExbD/TolR GO993_00065 PF01618 MotA/TolQ/ExbB proton channel family GO993_00080 PF07715 TonB-dependent Receptor Plug Domain GO993_00080 PF00593 TonB dependent receptor GO993_00090 PF13737 Transposase DDE domain GO993_00100 PF12911 N-terminal TM domain of oligopeptide transport permease C GO993_00100 PF00528 Binding-protein-dependent transport system inner membrane component GO993_00110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_00110 PF00005 ABC transporter GO993_00115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_00115 PF00005 ABC transporter GO993_00120 PF07687 Peptidase dimerisation domain GO993_00120 PF01546 Peptidase family M20/M25/M40 GO993_00130 PF00156 Phosphoribosyl transferase domain GO993_00140 PF07417 Sigma factor-binding transcriptional regulator Crl GO993_00145 PF01472 PUA domain GO993_00145 PF00696 Amino acid kinase family GO993_00150 PF00171 Aldehyde dehydrogenase family GO993_00160 PF00582 Universal stress protein family GO993_00180 PF00294 pfkB family carbohydrate kinase GO993_00190 PF13737 Transposase DDE domain GO993_00200 PF03150 Di-haem cytochrome c peroxidase GO993_00200 PF00034 Cytochrome c GO993_00220 PF13737 Transposase DDE domain GO993_00240 PF00550 Phosphopantetheine attachment site GO993_00245 PF00550 Phosphopantetheine attachment site GO993_00255 PF13193 AMP-binding enzyme C-terminal domain GO993_00255 PF00501 AMP-binding enzyme GO993_00260 PF07977 FabA-like domain GO993_00270 PF00221 Aromatic amino acid lyase GO993_00295 PF02801 Beta-ketoacyl synthase, C-terminal domain GO993_00295 PF00109 Beta-ketoacyl synthase, N-terminal domain GO993_00320 PF00994 Probable molybdopterin binding domain GO993_00325 PF13358 DDE superfamily endonuclease GO993_00325 PF13592 Winged helix-turn helix GO993_00335 PF13737 Transposase DDE domain GO993_00340 PF13808 DDE_Tnp_1-associated GO993_00340 PF01609 Transposase DDE domain GO993_00355 PF12821 Threonine/Serine exporter, ThrE GO993_00360 PF00186 Dihydrofolate reductase GO993_00365 PF00005 ABC transporter GO993_00365 PF00571 CBS domain GO993_00370 PF00528 Binding-protein-dependent transport system inner membrane component GO993_00375 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GO993_00380 PF01507 Phosphoadenosine phosphosulfate reductase family GO993_00385 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GO993_00385 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GO993_00390 PF00258 Flavodoxin GO993_00390 PF00667 FAD binding domain GO993_00390 PF00175 Oxidoreductase NAD-binding domain GO993_00395 PF02567 Phenazine biosynthesis-like protein GO993_00400 PF00152 tRNA synthetases class II (D, K and N) GO993_00400 PF01336 OB-fold nucleic acid binding domain GO993_00410 PF00672 HAMP domain GO993_00410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_00410 PF02743 Cache domain GO993_00425 PF07023 Protein of unknown function (DUF1315) GO993_00430 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GO993_00430 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GO993_00470 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO993_00470 PF01842 ACT domain GO993_00470 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO993_00475 PF05985 Ethanolamine ammonia-lyase light chain (EutC) GO993_00480 PF06751 Ethanolamine ammonia lyase large subunit (EutB) GO993_00495 PF00107 Zinc-binding dehydrogenase GO993_00495 PF08240 Alcohol dehydrogenase GroES-like domain GO993_00510 PF00367 phosphotransferase system, EIIB GO993_00510 PF02378 Phosphotransferase system, EIIC GO993_00510 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GO993_00525 PF00289 Biotin carboxylase, N-terminal domain GO993_00525 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GO993_00525 PF02785 Biotin carboxylase C-terminal domain GO993_00530 PF00364 Biotin-requiring enzyme GO993_00535 PF01220 Dehydroquinase class II GO993_00540 PF13193 AMP-binding enzyme C-terminal domain GO993_00540 PF00501 AMP-binding enzyme GO993_00540 PF16177 Acetyl-coenzyme A synthetase N-terminus GO993_00550 PF03707 Bacterial signalling protein N terminal repeat GO993_00550 PF00563 EAL domain GO993_00550 PF00990 Diguanylate cyclase, GGDEF domain GO993_00570 PF02613 Nitrate reductase delta subunit GO993_00580 PF00464 Serine hydroxymethyltransferase GO993_00595 PF03477 ATP cone domain GO993_00600 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GO993_00600 PF01872 RibD C-terminal domain GO993_00605 PF00677 Lumazine binding domain GO993_00615 PF00885 6,7-dimethyl-8-ribityllumazine synthase GO993_00620 PF01029 NusB family GO993_00625 PF02769 AIR synthase related protein, C-terminal domain GO993_00625 PF00586 AIR synthase related protein, N-terminal domain GO993_00630 PF04608 Phosphatidylglycerophosphatase A GO993_00640 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_00650 PF12911 N-terminal TM domain of oligopeptide transport permease C GO993_00650 PF00528 Binding-protein-dependent transport system inner membrane component GO993_00655 PF02780 Transketolase, C-terminal domain GO993_00655 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GO993_00655 PF02779 Transketolase, pyrimidine binding domain GO993_00660 PF00348 Polyprenyl synthetase GO993_00665 PF02609 Exonuclease VII small subunit GO993_00675 PF00691 OmpA family GO993_00675 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO993_00695 PF01272 Transcription elongation factor, GreA/GreB, C-term GO993_00695 PF03449 Transcription elongation factor, N-terminal GO993_00705 PF01985 CRS1 / YhbY (CRM) domain GO993_00710 PF01728 FtsJ-like methyltransferase GO993_00715 PF01434 Peptidase family M41 GO993_00715 PF00004 ATPase family associated with various cellular activities (AAA) GO993_00715 PF17862 AAA+ lid domain GO993_00715 PF06480 FtsH Extracellular GO993_00720 PF00809 Pterin binding enzyme GO993_00725 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GO993_00725 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GO993_00725 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GO993_00725 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GO993_00730 PF00121 Triosephosphate isomerase GO993_00735 PF03840 Preprotein translocase SecG subunit GO993_00750 PF17384 RimP C-terminal SH3 domain GO993_00750 PF02576 RimP N-terminal domain GO993_00755 PF00575 S1 RNA binding domain GO993_00755 PF08529 NusA N-terminal domain GO993_00755 PF13184 NusA-like KH domain GO993_00760 PF00009 Elongation factor Tu GTP binding domain GO993_00760 PF11987 Translation-initiation factor 2 GO993_00760 PF08364 Bacterial translation initiation factor IF-2 associated region GO993_00760 PF04760 Translation initiation factor IF-2, N-terminal region GO993_00765 PF02033 Ribosome-binding factor A GO993_00770 PF09157 Pseudouridine synthase II TruB, C-terminal GO993_00770 PF01509 TruB family pseudouridylate synthase (N terminal domain) GO993_00770 PF16198 tRNA pseudouridylate synthase B C-terminal domain GO993_00775 PF00312 Ribosomal protein S15 GO993_00780 PF00575 S1 RNA binding domain GO993_00780 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GO993_00780 PF03725 3' exoribonuclease family, domain 2 GO993_00780 PF01138 3' exoribonuclease family, domain 1 GO993_00780 PF00013 KH domain GO993_00785 PF07690 Major Facilitator Superfamily GO993_00790 PF00990 Diguanylate cyclase, GGDEF domain GO993_00795 PF02635 DsrE/DsrF-like family GO993_00800 PF06476 Protein of unknown function (DUF1090) GO993_00810 PF13737 Transposase DDE domain GO993_00815 PF03575 Peptidase family S51 GO993_00835 PF13737 Transposase DDE domain GO993_00850 PF13737 Transposase DDE domain GO993_00855 PF02668 Taurine catabolism dioxygenase TauD, TfdA family GO993_00860 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase GO993_00865 PF03734 L,D-transpeptidase catalytic domain GO993_00865 PF17969 L,D-transpeptidase C-terminal domain GO993_00875 PF01523 Putative modulator of DNA gyrase GO993_00880 PF01523 Putative modulator of DNA gyrase GO993_00885 PF00258 Flavodoxin GO993_00890 PF02899 Phage integrase, N-terminal SAM-like domain GO993_00890 PF00589 Phage integrase family GO993_00900 PF13737 Transposase DDE domain GO993_00910 PF01741 Large-conductance mechanosensitive channel, MscL GO993_00915 PF13808 DDE_Tnp_1-associated GO993_00915 PF01609 Transposase DDE domain GO993_00925 PF01368 DHH family GO993_00925 PF02272 DHHA1 domain GO993_00925 PF17768 RecJ OB domain GO993_00935 PF02508 Rnf-Nqr subunit, membrane protein GO993_00940 PF06821 Serine hydrolase GO993_00945 PF13302 Acetyltransferase (GNAT) domain GO993_00965 PF13737 Transposase DDE domain GO993_00995 PF13737 Transposase DDE domain GO993_01005 PF13737 Transposase DDE domain GO993_01020 PF13808 DDE_Tnp_1-associated GO993_01020 PF01609 Transposase DDE domain GO993_01045 PF04055 Radical SAM superfamily GO993_01045 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GO993_01050 PF03099 Biotin/lipoate A/B protein ligase family GO993_01055 PF04359 Protein of unknown function (DUF493) GO993_01060 PF07943 Penicillin-binding protein 5, C-terminal domain GO993_01060 PF00768 D-alanyl-D-alanine carboxypeptidase GO993_01065 PF03330 Lytic transglycolase GO993_01065 PF05036 Sporulation related domain GO993_01070 PF13406 Transglycosylase SLT domain GO993_01075 PF01098 Cell cycle protein GO993_01080 PF00905 Penicillin binding protein transpeptidase domain GO993_01080 PF03717 Penicillin-binding Protein dimerisation domain GO993_01085 PF02590 Predicted SPOUT methyltransferase GO993_01095 PF01467 Cytidylyltransferase-like GO993_01115 PF13603 Leucyl-tRNA synthetase, Domain 2 GO993_01115 PF08264 Anticodon-binding domain of tRNA GO993_01115 PF00133 tRNA synthetases class I (I, L, M and V) GO993_01120 PF07295 Zinc-ribbon containing domain GO993_01125 PF00795 Carbon-nitrogen hydrolase GO993_01130 PF03471 Transporter associated domain GO993_01130 PF00571 CBS domain GO993_01135 PF02130 Uncharacterized protein family UPF0054 GO993_01140 PF02562 PhoH-like protein GO993_01145 PF00919 Uncharacterized protein family UPF0004 GO993_01145 PF01938 TRAM domain GO993_01145 PF04055 Radical SAM superfamily GO993_01150 PF01494 FAD binding domain GO993_01155 PF00313 'Cold-shock' DNA-binding domain GO993_01160 PF00990 Diguanylate cyclase, GGDEF domain GO993_01160 PF05230 MASE2 domain GO993_01165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_01165 PF03466 LysR substrate binding domain GO993_01175 PF13419 Haloacid dehalogenase-like hydrolase GO993_01195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO993_01195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO993_01205 PF01132 Elongation factor P (EF-P) OB domain GO993_01205 PF08207 Elongation factor P (EF-P) KOW-like domain GO993_01205 PF09285 Elongation factor P, C-terminal GO993_01215 PF00478 IMP dehydrogenase / GMP reductase domain GO993_01230 PF00072 Response regulator receiver domain GO993_01230 PF00486 Transcriptional regulatory protein, C terminal GO993_01250 PF00501 AMP-binding enzyme GO993_01265 PF06224 Winged helix DNA-binding domain GO993_01285 PF02313 Fumarate reductase subunit D GO993_01290 PF02300 Fumarate reductase subunit C GO993_01295 PF13183 4Fe-4S dicluster domain GO993_01295 PF13085 2Fe-2S iron-sulfur cluster binding domain GO993_01300 PF00890 FAD binding domain GO993_01300 PF02910 Fumarate reductase flavoprotein C-term GO993_01310 PF03009 Glycerophosphoryl diester phosphodiesterase family GO993_01315 PF12794 Mechanosensitive ion channel inner membrane domain 1 GO993_01315 PF12795 Mechanosensitive ion channel porin domain GO993_01315 PF00924 Mechanosensitive ion channel GO993_01320 PF13358 DDE superfamily endonuclease GO993_01320 PF13592 Winged helix-turn helix GO993_01330 PF01476 LysM domain GO993_01330 PF08525 Opacity-associated protein A N-terminal motif GO993_01330 PF01551 Peptidase family M23 GO993_01345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_01345 PF03466 LysR substrate binding domain GO993_01365 PF03466 LysR substrate binding domain GO993_01365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_01370 PF17092 Penicillin-binding protein OB-like domain GO993_01370 PF00912 Transglycosylase GO993_01370 PF00905 Penicillin binding protein transpeptidase domain GO993_01400 PF01202 Shikimate kinase GO993_01405 PF01761 3-dehydroquinate synthase GO993_01415 PF02086 D12 class N6 adenine-specific DNA methyltransferase GO993_01420 PF00834 Ribulose-phosphate 3 epimerase family GO993_01425 PF13419 Haloacid dehalogenase-like hydrolase GO993_01430 PF00579 tRNA synthetases class I (W and Y) GO993_01445 PF00202 Aminotransferase class-III GO993_01450 PF04958 Arginine N-succinyltransferase beta subunit GO993_01455 PF00171 Aldehyde dehydrogenase family GO993_01465 PF13419 Haloacid dehalogenase-like hydrolase GO993_01495 PF06794 Uncharacterised protein family (UPF0270) GO993_01505 PF13737 Transposase DDE domain GO993_01520 PF00561 alpha/beta hydrolase fold GO993_01525 PF01584 CheW-like domain GO993_01525 PF00072 Response regulator receiver domain GO993_01535 PF09526 Probable metal-binding protein (DUF2387) GO993_01540 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_01545 PF04102 SlyX GO993_01555 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_01555 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO993_01580 PF02872 5'-nucleotidase, C-terminal domain GO993_01580 PF00149 Calcineurin-like phosphoesterase GO993_01585 PF12792 CSS motif domain associated with EAL GO993_01585 PF00563 EAL domain GO993_01595 PF03796 DnaB-like helicase C terminal domain GO993_01595 PF00772 DnaB-like helicase N terminal domain GO993_01600 PF01168 Alanine racemase, N-terminal domain GO993_01600 PF00842 Alanine racemase, C-terminal domain GO993_01605 PF12838 4Fe-4S dicluster domain GO993_01615 PF00990 Diguanylate cyclase, GGDEF domain GO993_01615 PF01590 GAF domain GO993_01615 PF00563 EAL domain GO993_01615 PF00989 PAS fold GO993_01620 PF13808 DDE_Tnp_1-associated GO993_01620 PF01609 Transposase DDE domain GO993_01635 PF01609 Transposase DDE domain GO993_01635 PF13808 DDE_Tnp_1-associated GO993_01650 PF13737 Transposase DDE domain GO993_01665 PF00106 short chain dehydrogenase GO993_01690 PF02074 Carboxypeptidase Taq (M32) metallopeptidase GO993_01705 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GO993_01705 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GO993_01710 PF01209 ubiE/COQ5 methyltransferase family GO993_01715 PF06906 Protein of unknown function (DUF1272) GO993_01735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_01735 PF03466 LysR substrate binding domain GO993_01740 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO993_01740 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO993_01750 PF00072 Response regulator receiver domain GO993_01770 PF01584 CheW-like domain GO993_01785 PF13737 Transposase DDE domain GO993_01795 PF03975 CheD chemotactic sensory transduction GO993_01800 PF00072 Response regulator receiver domain GO993_01800 PF01339 CheB methylesterase GO993_01805 PF00266 Aminotransferase class-V GO993_01835 PF13737 Transposase DDE domain GO993_01840 PF03573 outer membrane porin, OprD family GO993_01845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_01855 PF07995 Glucose / Sorbosone dehydrogenase GO993_01880 PF01817 Chorismate mutase type II GO993_01880 PF00800 Prephenate dehydratase GO993_01910 PF08349 Protein of unknown function (DUF1722) GO993_01920 PF03441 FAD binding domain of DNA photolyase GO993_01920 PF00875 DNA photolyase GO993_01970 PF00210 Ferritin-like domain GO993_01975 PF03063 Prismane/CO dehydrogenase family GO993_01980 PF00175 Oxidoreductase NAD-binding domain GO993_01980 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_01980 PF00970 Oxidoreductase FAD-binding domain GO993_01985 PF16363 GDP-mannose 4,6 dehydratase GO993_01990 PF13462 Thioredoxin GO993_01990 PF06965 Na+/H+ antiporter 1 GO993_02005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02005 PF03466 LysR substrate binding domain GO993_02010 PF03306 Alpha-acetolactate decarboxylase GO993_02015 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO993_02015 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO993_02015 PF00205 Thiamine pyrophosphate enzyme, central domain GO993_02020 PF01965 DJ-1/PfpI family GO993_02025 PF02558 Ketopantoate reductase PanE/ApbA GO993_02025 PF08546 Ketopantoate reductase PanE/ApbA C terminal GO993_02030 PF04461 Protein of unknown function (DUF520) GO993_02035 PF03502 Nucleoside-specific channel-forming protein, Tsx GO993_02040 PF07690 Major Facilitator Superfamily GO993_02050 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GO993_02060 PF05175 Methyltransferase small domain GO993_02065 PF01722 BolA-like protein GO993_02070 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) GO993_02070 PF11973 NQRA C-terminal domain GO993_02075 PF03116 NQR2, RnfD, RnfE family GO993_02080 PF04205 FMN-binding domain GO993_02085 PF02508 Rnf-Nqr subunit, membrane protein GO993_02090 PF02508 Rnf-Nqr subunit, membrane protein GO993_02095 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_02095 PF00970 Oxidoreductase FAD-binding domain GO993_02095 PF00175 Oxidoreductase NAD-binding domain GO993_02100 PF02424 ApbE family GO993_02115 PF00817 impB/mucB/samB family GO993_02115 PF11799 impB/mucB/samB family C-terminal domain GO993_02115 PF11798 IMS family HHH motif GO993_02120 PF00672 HAMP domain GO993_02120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_02125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02125 PF03466 LysR substrate binding domain GO993_02135 PF04241 Protein of unknown function (DUF423) GO993_02140 PF01728 FtsJ-like methyltransferase GO993_02140 PF18125 RlmM ferredoxin-like domain GO993_02150 PF18324 Hypothetical protein TT1725 GO993_02150 PF00180 Isocitrate/isopropylmalate dehydrogenase GO993_02155 PF01367 5'-3' exonuclease, C-terminal SAM fold GO993_02155 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GO993_02160 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases GO993_02160 PF11892 Domain of unknown function (DUF3412) GO993_02160 PF03641 Possible lysine decarboxylase GO993_02165 PF07694 5TMR of 5TMR-LYT GO993_02165 PF00990 Diguanylate cyclase, GGDEF domain GO993_02175 PF14489 QueF-like protein GO993_02175 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term GO993_02180 PF07348 Syd protein (SUKH-2) GO993_02185 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) GO993_02210 PF04287 tRNA pseudouridine synthase C GO993_02220 PF00258 Flavodoxin GO993_02225 PF02264 LamB porin GO993_02230 PF07148 Maltose operon periplasmic protein precursor (MalM) GO993_02235 PF02378 Phosphotransferase system, EIIC GO993_02235 PF00367 phosphotransferase system, EIIB GO993_02240 PF11944 Protein of unknown function (DUF3461) GO993_02245 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal GO993_02245 PF14602 Hexapeptide repeat of succinyl-transferase GO993_02245 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_02260 PF00318 Ribosomal protein S2 GO993_02265 PF00889 Elongation factor TS GO993_02270 PF00696 Amino acid kinase family GO993_02275 PF01765 Ribosome recycling factor GO993_02280 PF01255 Putative undecaprenyl diphosphate synthase GO993_02290 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GO993_02290 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GO993_02290 PF13288 DXP reductoisomerase C-terminal domain GO993_02295 PF02163 Peptidase family M50 GO993_02295 PF17820 PDZ domain GO993_02305 PF03938 Outer membrane protein (OmpH-like) GO993_02310 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD GO993_02310 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_02315 PF07977 FabA-like domain GO993_02320 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_02320 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 GO993_02325 PF02684 Lipid-A-disaccharide synthetase GO993_02330 PF01351 Ribonuclease HII GO993_02335 PF02811 PHP domain GO993_02335 PF01336 OB-fold nucleic acid binding domain GO993_02335 PF14579 Helix-hairpin-helix motif GO993_02335 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GO993_02335 PF07733 Bacterial DNA polymerase III alpha NTPase domain GO993_02340 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GO993_02350 PF13520 Amino acid permease GO993_02355 PF01276 Orn/Lys/Arg decarboxylase, major domain GO993_02355 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain GO993_02355 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GO993_02360 PF08543 Phosphomethylpyrimidine kinase GO993_02370 PF03466 LysR substrate binding domain GO993_02370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02380 PF13520 Amino acid permease GO993_02385 PF13302 Acetyltransferase (GNAT) domain GO993_02390 PF16326 ABC transporter C-terminal domain GO993_02390 PF12848 ABC transporter GO993_02390 PF00005 ABC transporter GO993_02405 PF11734 TilS substrate C-terminal domain GO993_02405 PF09179 TilS substrate binding domain GO993_02405 PF01171 PP-loop family GO993_02410 PF00990 Diguanylate cyclase, GGDEF domain GO993_02455 PF00072 Response regulator receiver domain GO993_02455 PF00196 Bacterial regulatory proteins, luxR family GO993_02465 PF00128 Alpha amylase, catalytic domain GO993_02485 PF03466 LysR substrate binding domain GO993_02485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02495 PF00155 Aminotransferase class I and II GO993_02500 PF07690 Major Facilitator Superfamily GO993_02505 PF03466 LysR substrate binding domain GO993_02505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02510 PF00106 short chain dehydrogenase GO993_02515 PF08496 Peptidase family S49 N-terminal GO993_02515 PF01343 Peptidase family S49 GO993_02520 PF04996 Succinylarginine dihydrolase GO993_02560 PF00005 ABC transporter GO993_02560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_02565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_02565 PF00005 ABC transporter GO993_02570 PF12911 N-terminal TM domain of oligopeptide transport permease C GO993_02570 PF00528 Binding-protein-dependent transport system inner membrane component GO993_02580 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_02605 PF10725 Protein of unknown function (DUF2517) GO993_02615 PF08447 PAS fold GO993_02615 PF13426 PAS domain GO993_02615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_02635 PF12804 MobA-like NTP transferase domain GO993_02640 PF00005 ABC transporter GO993_02645 PF00528 Binding-protein-dependent transport system inner membrane component GO993_02650 PF12849 PBP superfamily domain GO993_02670 PF02634 FdhD/NarQ family GO993_02675 PF00872 Transposase, Mutator family GO993_02725 PF00589 Phage integrase family GO993_02725 PF13356 Arm DNA-binding domain GO993_02735 PF01668 SmpB protein GO993_02745 PF03364 Polyketide cyclase / dehydrase and lipid transport GO993_02755 PF13460 NAD(P)H-binding GO993_02760 PF04355 SmpA / OmlA family GO993_02790 PF04972 BON domain GO993_02790 PF13629 Pilus formation protein N terminal region GO993_02790 PF00263 Bacterial type II and III secretion system protein GO993_02805 PF00437 Type II/IV secretion system protein GO993_02840 PF00465 Iron-containing alcohol dehydrogenase GO993_02845 PF01048 Phosphorylase superfamily GO993_02850 PF00849 RNA pseudouridylate synthase GO993_02855 PF01156 Inosine-uridine preferring nucleoside hydrolase GO993_02870 PF07509 Protein of unknown function (DUF1523) GO993_02875 PF12729 Four helix bundle sensory module for signal transduction GO993_02875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_02875 PF00672 HAMP domain GO993_02880 PF01810 LysE type translocator GO993_02890 PF13737 Transposase DDE domain GO993_02900 PF13737 Transposase DDE domain GO993_02905 PF02080 TrkA-C domain GO993_02905 PF00999 Sodium/hydrogen exchanger family GO993_02905 PF03471 Transporter associated domain GO993_02915 PF03471 Transporter associated domain GO993_02915 PF02080 TrkA-C domain GO993_02915 PF00999 Sodium/hydrogen exchanger family GO993_02925 PF02557 D-alanyl-D-alanine carboxypeptidase GO993_02930 PF01546 Peptidase family M20/M25/M40 GO993_02930 PF07687 Peptidase dimerisation domain GO993_02935 PF03960 ArsC family GO993_02940 PF03466 LysR substrate binding domain GO993_02940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_02955 PF03605 Anaerobic c4-dicarboxylate membrane transporter GO993_02960 PF01336 OB-fold nucleic acid binding domain GO993_02960 PF00152 tRNA synthetases class II (D, K and N) GO993_02975 PF00202 Aminotransferase class-III GO993_02980 PF04055 Radical SAM superfamily GO993_02980 PF06968 Biotin and Thiamin Synthesis associated domain GO993_02985 PF00155 Aminotransferase class I and II GO993_02990 PF08241 Methyltransferase domain GO993_02990 PF12697 Alpha/beta hydrolase family GO993_03000 PF01435 Peptidase family M48 GO993_03005 PF08447 PAS fold GO993_03005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_03005 PF13426 PAS domain GO993_03010 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_03010 PF03473 MOSC domain GO993_03010 PF03476 MOSC N-terminal beta barrel domain GO993_03010 PF03473 MOSC domain GO993_03010 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_03010 PF03476 MOSC N-terminal beta barrel domain GO993_03015 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GO993_03015 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region GO993_03015 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_03025 PF13737 Transposase DDE domain GO993_03040 PF04325 Protein of unknown function (DUF465) GO993_03055 PF01554 MatE GO993_03060 PF01740 STAS domain GO993_03060 PF00916 Sulfate permease family GO993_03085 PF00465 Iron-containing alcohol dehydrogenase GO993_03095 PF17932 Tetracyclin repressor-like, C-terminal domain GO993_03095 PF00440 Bacterial regulatory proteins, tetR family GO993_03100 PF00171 Aldehyde dehydrogenase family GO993_03110 PF00877 NlpC/P60 family GO993_03115 PF13737 Transposase DDE domain GO993_03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_03125 PF03466 LysR substrate binding domain GO993_03130 PF13592 Winged helix-turn helix GO993_03130 PF13358 DDE superfamily endonuclease GO993_03135 PF01584 CheW-like domain GO993_03135 PF02895 Signal transducing histidine kinase, homodimeric domain GO993_03135 PF01627 Hpt domain GO993_03135 PF00072 Response regulator receiver domain GO993_03135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_03140 PF01339 CheB methylesterase GO993_03140 PF00072 Response regulator receiver domain GO993_03145 PF01618 MotA/TolQ/ExbB proton channel family GO993_03150 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO993_03150 PF00691 OmpA family GO993_03155 PF13614 AAA domain GO993_03165 PF01584 CheW-like domain GO993_03180 PF00005 ABC transporter GO993_03185 PF03379 CcmB protein GO993_03190 PF01578 Cytochrome C assembly protein GO993_03195 PF04995 Heme exporter protein D (CcmD) GO993_03200 PF03100 CcmE GO993_03210 PF08534 Redoxin GO993_03215 PF03918 Cytochrome C biogenesis protein GO993_03225 PF04333 MlaA lipoprotein GO993_03230 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GO993_03230 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GO993_03235 PF00462 Glutaredoxin GO993_03240 PF01029 NusB family GO993_03240 PF01189 16S rRNA methyltransferase RsmB/F GO993_03255 PF01243 Pyridoxamine 5'-phosphate oxidase GO993_03255 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region GO993_03260 PF13417 Glutathione S-transferase, N-terminal domain GO993_03270 PF13508 Acetyltransferase (GNAT) domain GO993_03275 PF13737 Transposase DDE domain GO993_03280 PF13737 Transposase DDE domain GO993_03290 PF08007 Cupin superfamily protein GO993_03295 PF08328 Adenylosuccinate lyase C-terminal GO993_03295 PF00206 Lyase GO993_03300 PF04356 Protein of unknown function (DUF489) GO993_03310 PF00293 NUDIX domain GO993_03315 PF00849 RNA pseudouridylate synthase GO993_03325 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO993_03330 PF07690 Major Facilitator Superfamily GO993_03340 PF13737 Transposase DDE domain GO993_03360 PF13737 Transposase DDE domain GO993_03400 PF01169 Uncharacterized protein family UPF0016 GO993_03415 PF07664 Ferrous iron transport protein B C terminus GO993_03415 PF02421 Ferrous iron transport protein B GO993_03415 PF07670 Nucleoside recognition GO993_03430 PF13737 Transposase DDE domain GO993_03445 PF00437 Type II/IV secretion system protein GO993_03455 PF01627 Hpt domain GO993_03455 PF00989 PAS fold GO993_03455 PF00072 Response regulator receiver domain GO993_03455 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_03455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_03455 PF00512 His Kinase A (phospho-acceptor) domain GO993_03460 PF01032 FecCD transport family GO993_03465 PF00005 ABC transporter GO993_03470 PF00793 DAHP synthetase I family GO993_03475 PF01219 Prokaryotic diacylglycerol kinase GO993_03485 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) GO993_03505 PF05173 Dihydrodipicolinate reductase, C-terminus GO993_03505 PF01113 Dihydrodipicolinate reductase, N-terminus GO993_03510 PF00117 Glutamine amidotransferase class-I GO993_03510 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GO993_03515 PF02142 MGS-like domain GO993_03515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GO993_03515 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GO993_03530 PF13737 Transposase DDE domain GO993_03560 PF13302 Acetyltransferase (GNAT) domain GO993_03565 PF00271 Helicase conserved C-terminal domain GO993_03565 PF00270 DEAD/DEAH box helicase GO993_03590 PF13737 Transposase DDE domain GO993_03595 PF09278 MerR, DNA binding GO993_03595 PF00376 MerR family regulatory protein GO993_03610 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GO993_03610 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_03615 PF01645 Conserved region in glutamate synthase GO993_03615 PF00310 Glutamine amidotransferases class-II GO993_03615 PF04898 Glutamate synthase central domain GO993_03615 PF01493 GXGXG motif GO993_03620 PF16199 Radical_SAM C-terminal domain GO993_03620 PF04055 Radical SAM superfamily GO993_03670 PF01609 Transposase DDE domain GO993_03670 PF13808 DDE_Tnp_1-associated GO993_03685 PF13737 Transposase DDE domain GO993_03715 PF12241 Trans-2-enoyl-CoA reductase catalytic region GO993_03715 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GO993_03715 PF07055 Enoyl reductase FAD binding domain GO993_03720 PF03606 C4-dicarboxylate anaerobic carrier GO993_03735 PF00462 Glutaredoxin GO993_03745 PF04851 Type III restriction enzyme, res subunit GO993_03745 PF00271 Helicase conserved C-terminal domain GO993_03750 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_03750 PF00529 HlyD membrane-fusion protein of T1SS GO993_03755 PF11742 Protein of unknown function (DUF3302) GO993_03760 PF02554 Carbon starvation protein CstA GO993_03765 PF00072 Response regulator receiver domain GO993_03765 PF04397 LytTr DNA-binding domain GO993_03770 PF07694 5TMR of 5TMR-LYT GO993_03770 PF06580 Histidine kinase GO993_03780 PF13737 Transposase DDE domain GO993_03790 PF00171 Aldehyde dehydrogenase family GO993_03790 PF00465 Iron-containing alcohol dehydrogenase GO993_03800 PF01914 MarC family integral membrane protein GO993_03805 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_03810 PF00528 Binding-protein-dependent transport system inner membrane component GO993_03815 PF00528 Binding-protein-dependent transport system inner membrane component GO993_03815 PF12911 N-terminal TM domain of oligopeptide transport permease C GO993_03820 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_03820 PF00005 ABC transporter GO993_03830 PF00005 ABC transporter GO993_03830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_03835 PF03741 Integral membrane protein TerC family GO993_03840 PF01168 Alanine racemase, N-terminal domain GO993_03840 PF00842 Alanine racemase, C-terminal domain GO993_03850 PF13737 Transposase DDE domain GO993_03855 PF01168 Alanine racemase, N-terminal domain GO993_03855 PF00842 Alanine racemase, C-terminal domain GO993_03890 PF00672 HAMP domain GO993_03890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_03895 PF01230 HIT domain GO993_03930 PF07549 SecD/SecF GG Motif GO993_03930 PF02355 Protein export membrane protein GO993_03930 PF13721 SecD export protein N-terminal TM region GO993_03935 PF07549 SecD/SecF GG Motif GO993_03935 PF02355 Protein export membrane protein GO993_03950 PF13737 Transposase DDE domain GO993_03970 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 GO993_03975 PF13677 Membrane MotB of proton-channel complex MotA/MotB GO993_03975 PF00691 OmpA family GO993_03995 PF04536 TPM domain GO993_04005 PF03411 Penicillin-insensitive murein endopeptidase GO993_04015 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_04040 PF13737 Transposase DDE domain GO993_04045 PF00571 CBS domain GO993_04045 PF00478 IMP dehydrogenase / GMP reductase domain GO993_04050 PF00958 GMP synthase C terminal domain GO993_04050 PF00117 Glutamine amidotransferase class-I GO993_04050 PF02540 NAD synthase GO993_04070 PF13808 DDE_Tnp_1-associated GO993_04070 PF01609 Transposase DDE domain GO993_04085 PF05724 Thiopurine S-methyltransferase (TPMT) GO993_04095 PF00300 Histidine phosphatase superfamily (branch 1) GO993_04105 PF00892 EamA-like transporter family GO993_04110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_04115 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain GO993_04130 PF12704 MacB-like periplasmic core domain GO993_04130 PF02687 FtsX-like permease family GO993_04135 PF00005 ABC transporter GO993_04140 PF12704 MacB-like periplasmic core domain GO993_04140 PF02687 FtsX-like permease family GO993_04155 PF05698 Bacterial trigger factor protein (TF) C-terminus GO993_04155 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_04155 PF05697 Bacterial trigger factor protein (TF) GO993_04160 PF00574 Clp protease GO993_04165 PF06689 ClpX C4-type zinc finger GO993_04165 PF10431 C-terminal, D2-small domain, of ClpB protein GO993_04165 PF07724 AAA domain (Cdc48 subfamily) GO993_04170 PF05362 Lon protease (S16) C-terminal proteolytic domain GO993_04170 PF00004 ATPase family associated with various cellular activities (AAA) GO993_04170 PF02190 ATP-dependent protease La (LON) substrate-binding domain GO993_04175 PF00216 Bacterial DNA-binding protein GO993_04180 PF13145 PPIC-type PPIASE domain GO993_04185 PF12848 ABC transporter GO993_04185 PF00005 ABC transporter GO993_04190 PF00474 Sodium:solute symporter family GO993_04195 PF04341 Protein of unknown function, DUF485 GO993_04210 PF13737 Transposase DDE domain GO993_04220 PF00378 Enoyl-CoA hydratase/isomerase GO993_04220 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GO993_04220 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GO993_04225 PF01235 Sodium:alanine symporter family GO993_04230 PF00583 Acetyltransferase (GNAT) family GO993_04240 PF01184 GPR1/FUN34/yaaH family GO993_04260 PF13808 DDE_Tnp_1-associated GO993_04260 PF01609 Transposase DDE domain GO993_04270 PF13737 Transposase DDE domain GO993_04285 PF00265 Thymidine kinase GO993_04295 PF10722 Putative bacterial sensory transduction regulator GO993_04305 PF01168 Alanine racemase, N-terminal domain GO993_04305 PF00842 Alanine racemase, C-terminal domain GO993_04310 PF13808 DDE_Tnp_1-associated GO993_04310 PF01609 Transposase DDE domain GO993_04315 PF13737 Transposase DDE domain GO993_04325 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal GO993_04325 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GO993_04330 PF13247 4Fe-4S dicluster domain GO993_04335 PF03916 Polysulphide reductase, NrfD GO993_04340 PF00374 Nickel-dependent hydrogenase GO993_04345 PF01750 Hydrogenase maturation protease GO993_04350 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE GO993_04370 PF00005 ABC transporter GO993_04375 PF00005 ABC transporter GO993_04375 PF08402 TOBE domain GO993_04380 PF02492 CobW/HypB/UreG, nucleotide-binding domain GO993_04385 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA GO993_04390 PF00586 AIR synthase related protein, N-terminal domain GO993_04390 PF02769 AIR synthase related protein, C-terminal domain GO993_04395 PF01924 Hydrogenase formation hypA family GO993_04400 PF01455 HupF/HypC family GO993_04415 PF12390 Selenocysteine synthase N terminal GO993_04415 PF03841 L-seryl-tRNA selenium transferase GO993_04425 PF01750 Hydrogenase maturation protease GO993_04430 PF07450 Formate hydrogenlyase maturation protein HycH GO993_04435 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit GO993_04440 PF12838 4Fe-4S dicluster domain GO993_04445 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit GO993_04445 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit GO993_04445 PF00374 Nickel-dependent hydrogenase GO993_04450 PF00146 NADH dehydrogenase GO993_04455 PF00361 Proton-conducting membrane transporter GO993_04460 PF00037 4Fe-4S binding domain GO993_04460 PF12798 4Fe-4S binding domain GO993_04465 PF02705 K+ potassium transporter GO993_04470 PF13737 Transposase DDE domain GO993_04485 PF13737 Transposase DDE domain GO993_04500 PF01609 Transposase DDE domain GO993_04510 PF00102 Protein-tyrosine phosphatase GO993_04510 PF09013 YopH, N-terminal GO993_04525 PF13737 Transposase DDE domain GO993_04550 PF01047 MarR family GO993_04550 PF00480 ROK family GO993_04555 PF01979 Amidohydrolase family GO993_04560 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GO993_04570 PF00728 Glycosyl hydrolase family 20, catalytic domain GO993_04570 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain GO993_04570 PF03173 Putative carbohydrate binding domain GO993_04570 PF02838 Glycosyl hydrolase family 20, domain 2 GO993_04575 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain GO993_04575 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO993_04580 PF01475 Ferric uptake regulator family GO993_04590 PF00258 Flavodoxin GO993_04595 PF01402 Ribbon-helix-helix protein, copG family GO993_04605 PF12697 Alpha/beta hydrolase family GO993_04610 PF17206 SeqA protein N-terminal domain GO993_04610 PF03925 SeqA protein C-terminal domain GO993_04625 PF01047 MarR family GO993_04635 PF01066 CDP-alcohol phosphatidyltransferase GO993_04645 PF00528 Binding-protein-dependent transport system inner membrane component GO993_04655 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO993_04655 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_04655 PF00403 Heavy-metal-associated domain GO993_04660 PF02627 Carboxymuconolactone decarboxylase family GO993_04670 PF01625 Peptide methionine sulfoxide reductase GO993_04710 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GO993_04720 PF01464 Transglycosylase SLT domain GO993_04720 PF14718 Soluble lytic murein transglycosylase L domain GO993_04725 PF00356 Bacterial regulatory proteins, lacI family GO993_04735 PF03061 Thioesterase superfamily GO993_04745 PF03372 Endonuclease/Exonuclease/phosphatase family GO993_04750 PF01464 Transglycosylase SLT domain GO993_04750 PF01476 LysM domain GO993_04755 PF16123 Hydroxyacylglutathione hydrolase C-terminus GO993_04755 PF00753 Metallo-beta-lactamase superfamily GO993_04760 PF08241 Methyltransferase domain GO993_04765 PF00075 RNase H GO993_04770 PF00929 Exonuclease GO993_04790 PF13737 Transposase DDE domain GO993_04805 PF13580 SIS domain GO993_04820 PF01933 Uncharacterised protein family UPF0052 GO993_04830 PF00512 His Kinase A (phospho-acceptor) domain GO993_04830 PF01627 Hpt domain GO993_04830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_04830 PF00672 HAMP domain GO993_04830 PF17149 Periplasmic sensor domain found in signal transduction proteins GO993_04830 PF00072 Response regulator receiver domain GO993_04840 PF00072 Response regulator receiver domain GO993_04840 PF00196 Bacterial regulatory proteins, luxR family GO993_04845 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term GO993_04845 PF07730 Histidine kinase GO993_04845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_04845 PF00672 HAMP domain GO993_04855 PF13187 4Fe-4S dicluster domain GO993_04855 PF12838 4Fe-4S dicluster domain GO993_04865 PF01568 Molydopterin dinucleotide binding domain GO993_04865 PF10518 TAT (twin-arginine translocation) pathway signal sequence GO993_04865 PF00384 Molybdopterin oxidoreductase GO993_04865 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GO993_04885 PF03264 NapC/NirT cytochrome c family, N-terminal region GO993_04915 PF00528 Binding-protein-dependent transport system inner membrane component GO993_04920 PF00005 ABC transporter GO993_04920 PF03459 TOBE domain GO993_04925 PF00561 alpha/beta hydrolase fold GO993_04930 PF06406 StbA protein GO993_04940 PF06291 Bor protein GO993_04945 PF06291 Bor protein GO993_04950 PF00899 ThiF family GO993_04955 PF00994 Probable molybdopterin binding domain GO993_04955 PF03454 MoeA C-terminal region (domain IV) GO993_04955 PF03453 MoeA N-terminal region (domain I and II) GO993_04965 PF17200 Single Cache domain 2 GO993_04965 PF00672 HAMP domain GO993_04965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_04980 PF03466 LysR substrate binding domain GO993_04980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_04985 PF04264 YceI-like domain GO993_04995 PF13737 Transposase DDE domain GO993_05035 PF17810 Arginine decarboxylase helical bundle domain GO993_05035 PF17944 Arginine decarboxylase C-terminal helical extension GO993_05035 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO993_05040 PF13737 Transposase DDE domain GO993_05050 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO993_05060 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GO993_05060 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GO993_05065 PF00849 RNA pseudouridylate synthase GO993_05065 PF01479 S4 domain GO993_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_05080 PF03466 LysR substrate binding domain GO993_05090 PF10689 Protein of unknown function (DUF2496) GO993_05100 PF04391 Protein of unknown function (DUF533) GO993_05105 PF00155 Aminotransferase class I and II GO993_05105 PF00392 Bacterial regulatory proteins, gntR family GO993_05110 PF01654 Cytochrome bd terminal oxidase subunit I GO993_05120 PF13737 Transposase DDE domain GO993_05140 PF07690 Major Facilitator Superfamily GO993_05145 PF00248 Aldo/keto reductase family GO993_05150 PF03992 Antibiotic biosynthesis monooxygenase GO993_05180 PF03466 LysR substrate binding domain GO993_05180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_05185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GO993_05185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GO993_05190 PF00230 Major intrinsic protein GO993_05195 PF07690 Major Facilitator Superfamily GO993_05200 PF08220 DeoR-like helix-turn-helix domain GO993_05200 PF00455 DeoR C terminal sensor domain GO993_05210 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GO993_05210 PF01266 FAD dependent oxidoreductase GO993_05215 PF03009 Glycerophosphoryl diester phosphodiesterase family GO993_05220 PF00793 DAHP synthetase I family GO993_05225 PF01817 Chorismate mutase type II GO993_05225 PF02153 Prephenate dehydrogenase GO993_05230 PF03466 LysR substrate binding domain GO993_05230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_05235 PF04219 Protein of unknown function, DUF GO993_05240 PF03974 Ecotin GO993_05260 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain GO993_05260 PF00326 Prolyl oligopeptidase family GO993_05265 PF07715 TonB-dependent Receptor Plug Domain GO993_05265 PF00593 TonB dependent receptor GO993_05270 PF00884 Sulfatase GO993_05270 PF11893 Domain of unknown function (DUF3413) GO993_05275 PF07208 Protein of unknown function (DUF1414) GO993_05285 PF13737 Transposase DDE domain GO993_05290 PF01547 Bacterial extracellular solute-binding protein GO993_05295 PF00528 Binding-protein-dependent transport system inner membrane component GO993_05295 PF14785 Maltose transport system permease protein MalF P2 domain GO993_05300 PF00528 Binding-protein-dependent transport system inner membrane component GO993_05305 PF00005 ABC transporter GO993_05305 PF08402 TOBE domain GO993_05315 PF00561 alpha/beta hydrolase fold GO993_05320 PF01594 AI-2E family transporter GO993_05325 PF01206 Sulfurtransferase TusA GO993_05330 PF01435 Peptidase family M48 GO993_05330 PF07720 Tetratricopeptide repeat GO993_05340 PF03960 ArsC family GO993_05350 PF04336 Acyl carrier protein phosphodiesterase GO993_05360 PF00005 ABC transporter GO993_05370 PF00528 Binding-protein-dependent transport system inner membrane component GO993_05375 PF00528 Binding-protein-dependent transport system inner membrane component GO993_05390 PF04055 Radical SAM superfamily GO993_05395 PF00990 Diguanylate cyclase, GGDEF domain GO993_05395 PF03707 Bacterial signalling protein N terminal repeat GO993_05395 PF00563 EAL domain GO993_05420 PF02926 THUMP domain GO993_05420 PF02568 Thiamine biosynthesis protein (ThiI) GO993_05430 PF03458 UPF0126 domain GO993_05440 PF13737 Transposase DDE domain GO993_05450 PF00669 Bacterial flagellin N-terminal helical region GO993_05450 PF00700 Bacterial flagellin C-terminal helical region GO993_05460 PF13737 Transposase DDE domain GO993_05465 PF01497 Periplasmic binding protein GO993_05475 PF01048 Phosphorylase superfamily GO993_05485 PF02535 ZIP Zinc transporter GO993_05490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_05490 PF00672 HAMP domain GO993_05490 PF12729 Four helix bundle sensory module for signal transduction GO993_05495 PF00459 Inositol monophosphatase family GO993_05505 PF13737 Transposase DDE domain GO993_05520 PF00043 Glutathione S-transferase, C-terminal domain GO993_05520 PF02798 Glutathione S-transferase, N-terminal domain GO993_05555 PF02634 FdhD/NarQ family GO993_05560 PF00384 Molybdopterin oxidoreductase GO993_05570 PF05164 Cell division protein ZapA GO993_05575 PF03695 Uncharacterised protein family (UPF0149) GO993_05580 PF01494 FAD binding domain GO993_05585 PF01494 FAD binding domain GO993_05590 PF01571 Aminomethyltransferase folate-binding domain GO993_05590 PF08669 Glycine cleavage T-protein C-terminal barrel domain GO993_05595 PF01597 Glycine cleavage H-protein GO993_05600 PF02347 Glycine cleavage system P-protein GO993_05615 PF13192 Thioredoxin domain GO993_05615 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_05620 PF00578 AhpC/TSA family GO993_05620 PF10417 C-terminal domain of 1-Cys peroxiredoxin GO993_05625 PF00571 CBS domain GO993_05635 PF01702 Queuine tRNA-ribosyltransferase GO993_05640 PF02699 Preprotein translocase subunit GO993_05655 PF00581 Rhodanese-like domain GO993_05665 PF01136 Peptidase family U32 GO993_05670 PF01136 Peptidase family U32 GO993_05675 PF02036 SCP-2 sterol transfer family GO993_05685 PF00588 SpoU rRNA Methylase family GO993_05690 PF02082 Transcriptional regulator GO993_05695 PF00266 Aminotransferase class-V GO993_05700 PF01592 NifU-like N terminal domain GO993_05705 PF01521 Iron-sulphur cluster biosynthesis GO993_05710 PF07743 HSCB C-terminal oligomerisation domain GO993_05710 PF00226 DnaJ domain GO993_05720 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_05725 PF12404 Peptidase GO993_05725 PF00883 Cytosol aminopeptidase family, catalytic domain GO993_05735 PF00334 Nucleoside diphosphate kinase GO993_05740 PF04055 Radical SAM superfamily GO993_05750 PF13464 Domain of unknown function (DUF4115) GO993_05760 PF13393 Histidyl-tRNA synthetase GO993_05760 PF03129 Anticodon binding domain GO993_05765 PF09976 Tetratricopeptide repeat-like domain GO993_05775 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GO993_05775 PF01926 50S ribosome-binding GTPase GO993_05780 PF07191 zinc-ribbons GO993_05785 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_05785 PF01464 Transglycosylase SLT domain GO993_05790 PF02769 AIR synthase related protein, C-terminal domain GO993_05790 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GO993_05790 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal GO993_05820 PF01609 Transposase DDE domain GO993_05820 PF13808 DDE_Tnp_1-associated GO993_05830 PF00682 HMGL-like GO993_05840 PF13737 Transposase DDE domain GO993_05850 PF00378 Enoyl-CoA hydratase/isomerase GO993_05855 PF01039 Carboxyl transferase domain GO993_05860 PF02770 Acyl-CoA dehydrogenase, middle domain GO993_05860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GO993_05860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GO993_05865 PF00171 Aldehyde dehydrogenase family GO993_05875 PF00378 Enoyl-CoA hydratase/isomerase GO993_05880 PF00378 Enoyl-CoA hydratase/isomerase GO993_05885 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GO993_05885 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GO993_05895 PF13520 Amino acid permease GO993_05900 PF01925 Sulfite exporter TauE/SafE GO993_05930 PF13737 Transposase DDE domain GO993_05940 PF00356 Bacterial regulatory proteins, lacI family GO993_05940 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO993_05945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO993_05945 PF00381 PTS HPr component phosphorylation site GO993_05950 PF00294 pfkB family carbohydrate kinase GO993_05955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO993_05955 PF02378 Phosphotransferase system, EIIC GO993_05960 PF06945 Protein of unknown function (DUF1289) GO993_05965 PF06725 3D domain GO993_05965 PF03562 MltA specific insert domain GO993_05970 PF00111 2Fe-2S iron-sulfur cluster binding domain GO993_05975 PF00268 Ribonucleotide reductase, small chain GO993_05980 PF00317 Ribonucleotide reductase, all-alpha domain GO993_05980 PF03477 ATP cone domain GO993_05980 PF02867 Ribonucleotide reductase, barrel domain GO993_05995 PF00521 DNA gyrase/topoisomerase IV, subunit A GO993_05995 PF03989 DNA gyrase C-terminal domain, beta-propeller GO993_06015 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO993_06015 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO993_06015 PF03129 Anticodon binding domain GO993_06015 PF02824 TGS domain GO993_06020 PF05198 Translation initiation factor IF-3, N-terminal domain GO993_06020 PF00707 Translation initiation factor IF-3, C-terminal domain GO993_06025 PF01632 Ribosomal protein L35 GO993_06030 PF00453 Ribosomal protein L20 GO993_06035 PF01409 tRNA synthetases class II core domain (F) GO993_06035 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GO993_06040 PF01588 Putative tRNA binding domain GO993_06040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GO993_06040 PF03483 B3/4 domain GO993_06040 PF03484 tRNA synthetase B5 domain GO993_06040 PF03147 Ferredoxin-fold anticodon binding domain GO993_06045 PF00216 Bacterial DNA-binding protein GO993_06065 PF02146 Sir2 family GO993_06080 PF00356 Bacterial regulatory proteins, lacI family GO993_06105 PF05025 RbsD / FucU transport protein family GO993_06125 PF01171 PP-loop family GO993_06130 PF00582 Universal stress protein family GO993_06135 PF00027 Cyclic nucleotide-binding domain GO993_06135 PF13545 Crp-like helix-turn-helix domain GO993_06150 PF00403 Heavy-metal-associated domain GO993_06160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GO993_06160 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP GO993_06175 PF00115 Cytochrome C and Quinol oxidase polypeptide I GO993_06185 PF13185 GAF domain GO993_06190 PF17516 ProQ C-terminal domain GO993_06190 PF04352 ProQ/FINO family GO993_06195 PF11818 C-terminal domain of tail specific protease (DUF3340) GO993_06195 PF00595 PDZ domain GO993_06195 PF03572 Peptidase family S41 GO993_06195 PF17804 Tail specific protease N-terminal domain GO993_06200 PF17432 Domain of unknown function (DUF3458_C) ARM repeats GO993_06200 PF01433 Peptidase family M1 domain GO993_06200 PF11940 Domain of unknown function (DUF3458) Ig-like fold GO993_06225 PF01180 Dihydroorotate dehydrogenase GO993_06230 PF07126 Cell-division protein ZapC GO993_06235 PF13737 Transposase DDE domain GO993_06245 PF07745 Glycosyl hydrolase family 53 GO993_06265 PF00444 Ribosomal protein L36 GO993_06270 PF01197 Ribosomal protein L31 GO993_06285 PF01863 Protein of unknown function DUF45 GO993_06300 PF03606 C4-dicarboxylate anaerobic carrier GO993_06310 PF01266 FAD dependent oxidoreductase GO993_06310 PF05430 S-adenosyl-L-methionine-dependent methyltransferase GO993_06315 PF02801 Beta-ketoacyl synthase, C-terminal domain GO993_06315 PF00109 Beta-ketoacyl synthase, N-terminal domain GO993_06330 PF00285 Citrate synthase, C-terminal domain GO993_06335 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GO993_06340 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GO993_06345 PF00890 FAD binding domain GO993_06345 PF02910 Fumarate reductase flavoprotein C-term GO993_06350 PF13085 2Fe-2S iron-sulfur cluster binding domain GO993_06355 PF00676 Dehydrogenase E1 component GO993_06355 PF16078 2-oxoglutarate dehydrogenase N-terminus GO993_06355 PF16870 2-oxoglutarate dehydrogenase C-terminal GO993_06355 PF02779 Transketolase, pyrimidine binding domain GO993_06360 PF02817 e3 binding domain GO993_06360 PF00364 Biotin-requiring enzyme GO993_06360 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO993_06365 PF00549 CoA-ligase GO993_06365 PF08442 ATP-grasp domain GO993_06370 PF00549 CoA-ligase GO993_06370 PF02629 CoA binding domain GO993_06375 PF03692 Putative zinc- or iron-chelating domain GO993_06380 PF01228 Glycine radical GO993_06380 PF02901 Pyruvate formate lyase-like GO993_06385 PF01226 Formate/nitrite transporter GO993_06390 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding GO993_06390 PF18381 YcaO cyclodehydratase C-terminal domain GO993_06395 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO993_06395 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO993_06405 PF13737 Transposase DDE domain GO993_06415 PF13808 DDE_Tnp_1-associated GO993_06415 PF01609 Transposase DDE domain GO993_06450 PF07152 YaeQ protein GO993_06465 PF00005 ABC transporter GO993_06490 PF05433 Glycine zipper 2TM domain GO993_06500 PF03606 C4-dicarboxylate anaerobic carrier GO993_06515 PF13737 Transposase DDE domain GO993_06540 PF00343 Carbohydrate phosphorylase GO993_06545 PF00939 Sodium:sulfate symporter transmembrane region GO993_06550 PF00085 Thioredoxin GO993_06555 PF00072 Response regulator receiver domain GO993_06555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_06555 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO993_06555 PF01627 Hpt domain GO993_06555 PF00672 HAMP domain GO993_06555 PF00512 His Kinase A (phospho-acceptor) domain GO993_06565 PF00005 ABC transporter GO993_06565 PF00664 ABC transporter transmembrane region GO993_06580 PF01575 MaoC like domain GO993_06585 PF00561 alpha/beta hydrolase fold GO993_06585 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus GO993_06605 PF08543 Phosphomethylpyrimidine kinase GO993_06610 PF03992 Antibiotic biosynthesis monooxygenase GO993_06615 PF00465 Iron-containing alcohol dehydrogenase GO993_06635 PF01928 CYTH domain GO993_06640 PF13737 Transposase DDE domain GO993_06660 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GO993_06670 PF13673 Acetyltransferase (GNAT) domain GO993_06675 PF00271 Helicase conserved C-terminal domain GO993_06675 PF00270 DEAD/DEAH box helicase GO993_06680 PF00255 Glutathione peroxidase GO993_06690 PF07478 D-ala D-ala ligase C-terminus GO993_06690 PF01820 D-ala D-ala ligase N-terminus GO993_06705 PF01925 Sulfite exporter TauE/SafE GO993_06710 PF03466 LysR substrate binding domain GO993_06710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_06725 PF11398 Protein of unknown function (DUF2813) GO993_06785 PF13419 Haloacid dehalogenase-like hydrolase GO993_06800 PF13808 DDE_Tnp_1-associated GO993_06800 PF01609 Transposase DDE domain GO993_06815 PF13737 Transposase DDE domain GO993_06825 PF13737 Transposase DDE domain GO993_06855 PF13737 Transposase DDE domain GO993_06860 PF09013 YopH, N-terminal GO993_06860 PF00102 Protein-tyrosine phosphatase GO993_06870 PF13592 Winged helix-turn helix GO993_06870 PF13358 DDE superfamily endonuclease GO993_06895 PF01713 Smr domain GO993_06900 PF05175 Methyltransferase small domain GO993_06905 PF01264 Chorismate synthase GO993_06915 PF00270 DEAD/DEAH box helicase GO993_06915 PF00271 Helicase conserved C-terminal domain GO993_06935 PF13737 Transposase DDE domain GO993_06950 PF13654 AAA domain GO993_06950 PF05362 Lon protease (S16) C-terminal proteolytic domain GO993_06955 PF07977 FabA-like domain GO993_06960 PF04957 Ribosome modulation factor GO993_06995 PF01381 Helix-turn-helix GO993_07085 PF04403 Paraquat-inducible protein A GO993_07095 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF GO993_07095 PF01189 16S rRNA methyltransferase RsmB/F GO993_07095 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF GO993_07105 PF00589 Phage integrase family GO993_07110 PF01026 TatD related DNase GO993_07115 PF09115 DNA polymerase III, delta subunit, C terminal GO993_07120 PF02223 Thymidylate kinase GO993_07125 PF02618 YceG-like family GO993_07130 PF01063 Amino-transferase class IV GO993_07135 PF02801 Beta-ketoacyl synthase, C-terminal domain GO993_07135 PF00109 Beta-ketoacyl synthase, N-terminal domain GO993_07140 PF00550 Phosphopantetheine attachment site GO993_07150 PF00698 Acyl transferase domain GO993_07155 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO993_07155 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO993_07160 PF02504 Fatty acid synthesis protein GO993_07165 PF01783 Ribosomal L32p protein family GO993_07170 PF02620 Large ribosomal RNA subunit accumulation protein YceD GO993_07175 PF02545 Maf-like protein GO993_07200 PF00692 dUTPase GO993_07205 PF00485 Phosphoribulokinase / Uridine kinase family GO993_07210 PF10609 NUBPL iron-transfer P-loop NTPase GO993_07215 PF08264 Anticodon-binding domain of tRNA GO993_07215 PF09334 tRNA synthetases class I (M) GO993_07215 PF01588 Putative tRNA binding domain GO993_07225 PF00708 Acylphosphatase GO993_07230 PF13737 Transposase DDE domain GO993_07240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_07240 PF12729 Four helix bundle sensory module for signal transduction GO993_07240 PF00672 HAMP domain GO993_07245 PF17785 PUA-like domain GO993_07245 PF10672 S-adenosylmethionine-dependent methyltransferase GO993_07260 PF00586 AIR synthase related protein, N-terminal domain GO993_07260 PF02769 AIR synthase related protein, C-terminal domain GO993_07275 PF01386 Ribosomal L25p family GO993_07290 PF00571 CBS domain GO993_07290 PF01368 DHH family GO993_07290 PF02272 DHHA1 domain GO993_07290 PF01743 Poly A polymerase head domain GO993_07295 PF00072 Response regulator receiver domain GO993_07295 PF00196 Bacterial regulatory proteins, luxR family GO993_07305 PF02575 YbaB/EbfC DNA-binding family GO993_07310 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding GO993_07310 PF12170 DNA polymerase III tau subunit V interacting with alpha GO993_07310 PF12169 DNA polymerase III subunits gamma and tau domain III GO993_07315 PF00156 Phosphoribosyl transferase domain GO993_07320 PF04304 Protein of unknown function (DUF454) GO993_07325 PF01207 Dihydrouridine synthase (Dus) GO993_07345 PF00501 AMP-binding enzyme GO993_07345 PF13193 AMP-binding enzyme C-terminal domain GO993_07350 PF12697 Alpha/beta hydrolase family GO993_07360 PF00814 Glycoprotease family GO993_07365 PF04851 Type III restriction enzyme, res subunit GO993_07365 PF13307 Helicase C-terminal domain GO993_07375 PF08029 HisG, C-terminal domain GO993_07375 PF01634 ATP phosphoribosyltransferase GO993_07380 PF00815 Histidinol dehydrogenase GO993_07385 PF00155 Aminotransferase class I and II GO993_07390 PF08645 Polynucleotide kinase 3 phosphatase GO993_07390 PF00475 Imidazoleglycerol-phosphate dehydratase GO993_07395 PF00117 Glutamine amidotransferase class-I GO993_07400 PF00977 Histidine biosynthesis protein GO993_07420 PF00977 Histidine biosynthesis protein GO993_07425 PF01502 Phosphoribosyl-AMP cyclohydrolase GO993_07425 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GO993_07435 PF13280 WYL domain GO993_07435 PF08279 HTH domain GO993_07450 PF13737 Transposase DDE domain GO993_07465 PF00425 chorismate binding enzyme GO993_07465 PF04715 Anthranilate synthase component I, N terminal region GO993_07470 PF00293 NUDIX domain GO993_07475 PF03222 Tryptophan/tyrosine permease family GO993_07480 PF00375 Sodium:dicarboxylate symporter family GO993_07485 PF00570 HRDC domain GO993_07485 PF16124 RecQ zinc-binding GO993_07485 PF09382 RQC domain GO993_07485 PF00271 Helicase conserved C-terminal domain GO993_07485 PF00270 DEAD/DEAH box helicase GO993_07490 PF08298 PrkA AAA domain GO993_07490 PF06798 PrkA serine protein kinase C-terminal domain GO993_07495 PF04285 Protein of unknown function (DUF444) GO993_07500 PF04293 SpoVR like protein GO993_07505 PF07840 FadR C-terminal domain GO993_07505 PF00392 Bacterial regulatory proteins, gntR family GO993_07510 PF06450 Bacterial Na+/H+ antiporter B (NhaB) GO993_07515 PF02600 Disulfide bond formation protein DsbB GO993_07520 PF09335 SNARE associated Golgi protein GO993_07540 PF06826 Predicted Permease Membrane Region GO993_07540 PF02080 TrkA-C domain GO993_07560 PF01970 Tripartite tricarboxylate transporter TctA family GO993_07565 PF08279 HTH domain GO993_07565 PF12431 Transcriptional regulator GO993_07565 PF00072 Response regulator receiver domain GO993_07575 PF01047 MarR family GO993_07575 PF00480 ROK family GO993_07585 PF02810 SEC-C motif GO993_07615 PF13247 4Fe-4S dicluster domain GO993_07615 PF00037 4Fe-4S binding domain GO993_07620 PF03916 Polysulphide reductase, NrfD GO993_07625 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal GO993_07625 PF01578 Cytochrome C assembly protein GO993_07630 PF08534 Redoxin GO993_07635 PF03918 Cytochrome C biogenesis protein GO993_07645 PF00768 D-alanyl-D-alanine carboxypeptidase GO993_07650 PF01212 Beta-eliminating lyase GO993_07665 PF01266 FAD dependent oxidoreductase GO993_07680 PF13737 Transposase DDE domain GO993_07720 PF12833 Helix-turn-helix domain GO993_07720 PF06445 GyrI-like small molecule binding domain GO993_07725 PF00106 short chain dehydrogenase GO993_07745 PF01053 Cys/Met metabolism PLP-dependent enzyme GO993_07760 PF13737 Transposase DDE domain GO993_07775 PF13737 Transposase DDE domain GO993_07785 PF05036 Sporulation related domain GO993_07785 PF03330 Lytic transglycolase GO993_07790 PF16330 MukB hinge domain GO993_07790 PF04310 MukB N-terminal GO993_07795 PF04288 MukE-like family GO993_07800 PF17193 MukF C-terminal domain GO993_07800 PF17192 MukF middle domain GO993_07800 PF03882 MukF winged-helix domain GO993_07805 PF13847 Methyltransferase domain GO993_07815 PF00121 Triosephosphate isomerase GO993_07820 PF00365 Phosphofructokinase GO993_07860 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GO993_07875 PF13737 Transposase DDE domain GO993_07890 PF03831 PhnA domain GO993_07890 PF08274 PhnA Zinc-Ribbon GO993_07900 PF02803 Thiolase, C-terminal domain GO993_07900 PF00108 Thiolase, N-terminal domain GO993_07945 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GO993_07950 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) GO993_07955 PF00563 EAL domain GO993_07955 PF08668 HDOD domain GO993_07960 PF02803 Thiolase, C-terminal domain GO993_07960 PF00108 Thiolase, N-terminal domain GO993_07965 PF00376 MerR family regulatory protein GO993_07965 PF09278 MerR, DNA binding GO993_07970 PF00375 Sodium:dicarboxylate symporter family GO993_07975 PF06865 Pyrimidine/purine nucleoside phosphorylase GO993_07980 PF03313 Serine dehydratase alpha chain GO993_07980 PF03315 Serine dehydratase beta chain GO993_07985 PF03315 Serine dehydratase beta chain GO993_07985 PF03313 Serine dehydratase alpha chain GO993_07990 PF13406 Transglycosylase SLT domain GO993_07995 PF05166 YcgL domain GO993_08000 PF05209 Septum formation inhibitor MinC, N-terminal domain GO993_08000 PF03775 Septum formation inhibitor MinC, C-terminal domain GO993_08005 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GO993_08010 PF03776 Septum formation topological specificity factor MinE GO993_08015 PF04269 Protein of unknown function, DUF440 GO993_08065 PF02525 Flavodoxin-like fold GO993_08075 PF02222 ATP-grasp domain GO993_08080 PF13419 Haloacid dehalogenase-like hydrolase GO993_08090 PF00677 Lumazine binding domain GO993_08095 PF06786 Uncharacterised protein family (UPF0253) GO993_08100 PF01554 MatE GO993_08135 PF03104 DNA polymerase family B, exonuclease domain GO993_08135 PF00136 DNA polymerase family B GO993_08160 PF03279 Bacterial lipid A biosynthesis acyltransferase GO993_08165 PF03279 Bacterial lipid A biosynthesis acyltransferase GO993_08175 PF03466 LysR substrate binding domain GO993_08175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_08180 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GO993_08180 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GO993_08185 PF01261 Xylose isomerase-like TIM barrel GO993_08190 PF03466 LysR substrate binding domain GO993_08190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_08200 PF00232 Glycosyl hydrolase family 1 GO993_08210 PF01609 Transposase DDE domain GO993_08210 PF13808 DDE_Tnp_1-associated GO993_08255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_08255 PF00672 HAMP domain GO993_08265 PF07745 Glycosyl hydrolase family 53 GO993_08270 PF07745 Glycosyl hydrolase family 53 GO993_08280 PF00356 Bacterial regulatory proteins, lacI family GO993_08285 PF16363 GDP-mannose 4,6 dehydratase GO993_08295 PF10509 Galactokinase galactose-binding signature GO993_08295 PF08544 GHMP kinases C terminal GO993_08295 PF00288 GHMP kinases N terminal domain GO993_08305 PF02653 Branched-chain amino acid transport system / permease component GO993_08310 PF00005 ABC transporter GO993_08315 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO993_08320 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GO993_08325 PF00596 Class II Aldolase and Adducin N-terminal domain GO993_08330 PF11762 L-arabinose isomerase C-terminal domain GO993_08330 PF02610 L-arabinose isomerase GO993_08335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_08335 PF03466 LysR substrate binding domain GO993_08345 PF00795 Carbon-nitrogen hydrolase GO993_08360 PF08411 Exonuclease C-terminal GO993_08360 PF00929 Exonuclease GO993_08375 PF03788 LrgA family GO993_08380 PF04172 LrgB-like family GO993_08385 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region GO993_08385 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GO993_08390 PF00501 AMP-binding enzyme GO993_08405 PF03741 Integral membrane protein TerC family GO993_08410 PF00691 OmpA family GO993_08415 PF00990 Diguanylate cyclase, GGDEF domain GO993_08415 PF17152 Periplasmic sensor domain GO993_08420 PF13689 YfiR/HmsC-like GO993_08425 PF18024 Helix-turn-helix domain GO993_08425 PF00158 Sigma-54 interaction domain GO993_08430 PF01329 Pterin 4 alpha carbinolamine dehydratase GO993_08435 PF00351 Biopterin-dependent aromatic amino acid hydroxylase GO993_08440 PF05128 Domain of unknown function (DUF697) GO993_08455 PF06667 Phage shock protein B GO993_08460 PF04012 PspA/IM30 family GO993_08470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_08485 PF00005 ABC transporter GO993_08485 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GO993_08490 PF00005 ABC transporter GO993_08495 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) GO993_08500 PF00156 Phosphoribosyl transferase domain GO993_08505 PF02674 Colicin V production protein GO993_08510 PF02403 Seryl-tRNA synthetase N-terminal domain GO993_08510 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO993_08515 PF00004 ATPase family associated with various cellular activities (AAA) GO993_08515 PF16193 AAA C-terminal domain GO993_08515 PF12002 MgsA AAA+ ATPase C terminal GO993_08520 PF03548 Outer membrane lipoprotein carrier protein LolA GO993_08525 PF09397 Ftsk gamma domain GO993_08525 PF01580 FtsK/SpoIIIE family GO993_08525 PF13491 4TM region of DNA translocase FtsK/SpoIIIE GO993_08525 PF17854 FtsK alpha domain GO993_08530 PF01037 Lrp/AsnC ligand binding domain GO993_08545 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_08560 PF03588 Leucyl/phenylalanyl-tRNA protein transferase GO993_08565 PF04377 Arginine-tRNA-protein transferase, C terminus GO993_08565 PF04376 Arginine-tRNA-protein transferase, N terminus GO993_08570 PF01176 Translation initiation factor 1A / IF-1 GO993_08575 PF10431 C-terminal, D2-small domain, of ClpB protein GO993_08575 PF07724 AAA domain (Cdc48 subfamily) GO993_08575 PF17871 AAA lid domain GO993_08575 PF00004 ATPase family associated with various cellular activities (AAA) GO993_08575 PF02861 Clp amino terminal domain, pathogenicity island component GO993_08580 PF02617 ATP-dependent Clp protease adaptor protein ClpS GO993_08585 PF00313 'Cold-shock' DNA-binding domain GO993_08590 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GO993_08590 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GO993_08685 PF13737 Transposase DDE domain GO993_08695 PF13737 Transposase DDE domain GO993_08755 PF00892 EamA-like transporter family GO993_08760 PF02508 Rnf-Nqr subunit, membrane protein GO993_08765 PF04060 Putative Fe-S cluster GO993_08780 PF04205 FMN-binding domain GO993_08790 PF10576 Iron-sulfur binding domain of endonuclease III GO993_08790 PF00633 Helix-hairpin-helix motif GO993_08790 PF00730 HhH-GPD superfamily base excision DNA repair protein GO993_08795 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO993_08800 PF00691 OmpA family GO993_08800 PF18393 MotY N-terminal domain GO993_08805 PF00672 HAMP domain GO993_08805 PF12729 Four helix bundle sensory module for signal transduction GO993_08805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_08810 PF00929 Exonuclease GO993_08820 PF00872 Transposase, Mutator family GO993_08835 PF03880 DbpA RNA binding domain GO993_08835 PF00270 DEAD/DEAH box helicase GO993_08835 PF00271 Helicase conserved C-terminal domain GO993_08840 PF03061 Thioesterase superfamily GO993_08860 PF03471 Transporter associated domain GO993_08860 PF03741 Integral membrane protein TerC family GO993_08865 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GO993_08870 PF00962 Adenosine/AMP deaminase GO993_08875 PF13344 Haloacid dehalogenase-like hydrolase GO993_08890 PF00733 Asparagine synthase GO993_08890 PF13537 Glutamine amidotransferase domain GO993_08895 PF03577 Peptidase family C69 GO993_08905 PF13737 Transposase DDE domain GO993_08915 PF13417 Glutathione S-transferase, N-terminal domain GO993_08915 PF00043 Glutathione S-transferase, C-terminal domain GO993_08920 PF14497 Glutathione S-transferase, C-terminal domain GO993_08920 PF02798 Glutathione S-transferase, N-terminal domain GO993_08945 PF00849 RNA pseudouridylate synthase GO993_08955 PF13737 Transposase DDE domain GO993_08975 PF01027 Inhibitor of apoptosis-promoting Bax1 GO993_08980 PF12805 FUSC-like inner membrane protein yccS GO993_08985 PF04358 DsrC like protein GO993_08990 PF05036 Sporulation related domain GO993_09005 PF01416 tRNA pseudouridine synthase GO993_09015 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO993_09015 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO993_09020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO993_09020 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO993_09020 PF11890 Domain of unknown function (DUF3410) GO993_09025 PF01569 PAP2 superfamily GO993_09030 PF03180 NLPA lipoprotein GO993_09045 PF13737 Transposase DDE domain GO993_09070 PF13737 Transposase DDE domain GO993_09090 PF00082 Subtilase family GO993_09090 PF01483 Proprotein convertase P-domain GO993_09095 PF13737 Transposase DDE domain GO993_09150 PF03239 Iron permease FTR1 family GO993_09155 PF01593 Flavin containing amine oxidoreductase GO993_09175 PF07690 Major Facilitator Superfamily GO993_09210 PF02308 MgtC family GO993_09245 PF13737 Transposase DDE domain GO993_09265 PF01625 Peptide methionine sulfoxide reductase GO993_09270 PF00583 Acetyltransferase (GNAT) family GO993_09270 PF00696 Amino acid kinase family GO993_09310 PF01906 Putative heavy-metal-binding GO993_09315 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_09320 PF05728 Uncharacterised protein family (UPF0227) GO993_09325 PF13592 Winged helix-turn helix GO993_09325 PF13358 DDE superfamily endonuclease GO993_09340 PF13737 Transposase DDE domain GO993_09345 PF00816 H-NS histone family GO993_09350 PF01923 Cobalamin adenosyltransferase GO993_09355 PF12843 Putative quorum-sensing-regulated virulence factor GO993_09360 PF04055 Radical SAM superfamily GO993_09365 PF06508 Queuosine biosynthesis protein QueC GO993_09380 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GO993_09395 PF00216 Bacterial DNA-binding protein GO993_09400 PF00575 S1 RNA binding domain GO993_09405 PF02224 Cytidylate kinase GO993_09410 PF00925 GTP cyclohydrolase II GO993_09415 PF03466 LysR substrate binding domain GO993_09415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_09420 PF03466 LysR substrate binding domain GO993_09420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_09425 PF07690 Major Facilitator Superfamily GO993_09440 PF00881 Nitroreductase family GO993_09445 PF13188 PAS domain GO993_09445 PF03707 Bacterial signalling protein N terminal repeat GO993_09445 PF00563 EAL domain GO993_09445 PF00990 Diguanylate cyclase, GGDEF domain GO993_09450 PF13358 DDE superfamily endonuclease GO993_09450 PF13592 Winged helix-turn helix GO993_09460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_09460 PF03466 LysR substrate binding domain GO993_09475 PF01212 Beta-eliminating lyase GO993_09480 PF00106 short chain dehydrogenase GO993_09490 PF00248 Aldo/keto reductase family GO993_09495 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) GO993_09510 PF13737 Transposase DDE domain GO993_09520 PF02601 Exonuclease VII, large subunit GO993_09520 PF13742 OB-fold nucleic acid binding domain GO993_09525 PF04055 Radical SAM superfamily GO993_09530 PF00672 HAMP domain GO993_09530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_09535 PF00793 DAHP synthetase I family GO993_09540 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GO993_09545 PF00266 Aminotransferase class-V GO993_09550 PF01012 Electron transfer flavoprotein domain GO993_09550 PF00766 Electron transfer flavoprotein FAD-binding domain GO993_09555 PF01012 Electron transfer flavoprotein domain GO993_09570 PF01544 CorA-like Mg2+ transporter protein GO993_09575 PF11143 Protein of unknown function (DUF2919) GO993_09600 PF01032 FecCD transport family GO993_09605 PF00005 ABC transporter GO993_09610 PF17837 4'-phosphopantetheinyl transferase N-terminal domain GO993_09610 PF01648 4'-phosphopantetheinyl transferase superfamily GO993_09640 PF00550 Phosphopantetheine attachment site GO993_09640 PF00857 Isochorismatase family GO993_09655 PF07273 Protein of unknown function (DUF1439) GO993_09685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_09685 PF00672 HAMP domain GO993_09685 PF17200 Single Cache domain 2 GO993_09700 PF00762 Ferrochelatase GO993_09705 PF05191 Adenylate kinase, active site lid GO993_09715 PF00183 Hsp90 protein GO993_09715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_09720 PF02132 RecR protein GO993_09720 PF13662 Toprim domain GO993_09725 PF02634 FdhD/NarQ family GO993_09730 PF00158 Sigma-54 interaction domain GO993_09730 PF01590 GAF domain GO993_09730 PF02954 Bacterial regulatory protein, Fis family GO993_09740 PF13808 DDE_Tnp_1-associated GO993_09740 PF01609 Transposase DDE domain GO993_09755 PF13737 Transposase DDE domain GO993_09760 PF00668 Condensation domain GO993_09760 PF02801 Beta-ketoacyl synthase, C-terminal domain GO993_09760 PF00550 Phosphopantetheine attachment site GO993_09760 PF00698 Acyl transferase domain GO993_09760 PF00109 Beta-ketoacyl synthase, N-terminal domain GO993_09760 PF16197 Ketoacyl-synthetase C-terminal extension GO993_09765 PF01609 Transposase DDE domain GO993_09765 PF13808 DDE_Tnp_1-associated GO993_09770 PF08659 KR domain GO993_09770 PF00501 AMP-binding enzyme GO993_09770 PF14765 Polyketide synthase dehydratase GO993_09770 PF00550 Phosphopantetheine attachment site GO993_09770 PF00668 Condensation domain GO993_09770 PF16197 Ketoacyl-synthetase C-terminal extension GO993_09770 PF00109 Beta-ketoacyl synthase, N-terminal domain GO993_09770 PF13193 AMP-binding enzyme C-terminal domain GO993_09770 PF02801 Beta-ketoacyl synthase, C-terminal domain GO993_09780 PF13737 Transposase DDE domain GO993_09785 PF00550 Phosphopantetheine attachment site GO993_09785 PF00668 Condensation domain GO993_09785 PF13193 AMP-binding enzyme C-terminal domain GO993_09785 PF00501 AMP-binding enzyme GO993_09785 PF00975 Thioesterase domain GO993_09800 PF08019 Phosphoethanolamine transferase EptA/EptB GO993_09800 PF00884 Sulfatase GO993_09805 PF01709 Transcriptional regulator GO993_09810 PF02938 GAD domain GO993_09810 PF00152 tRNA synthetases class II (D, K and N) GO993_09810 PF01336 OB-fold nucleic acid binding domain GO993_09825 PF13737 Transposase DDE domain GO993_09835 PF13649 Methyltransferase domain GO993_09840 PF08003 Protein of unknown function (DUF1698) GO993_09860 PF00578 AhpC/TSA family GO993_09860 PF10417 C-terminal domain of 1-Cys peroxiredoxin GO993_09865 PF13808 DDE_Tnp_1-associated GO993_09865 PF01609 Transposase DDE domain GO993_09870 PF13592 Winged helix-turn helix GO993_09870 PF13358 DDE superfamily endonuclease GO993_09875 PF04344 Chemotaxis phosphatase, CheZ GO993_09880 PF00072 Response regulator receiver domain GO993_09890 PF10609 NUBPL iron-transfer P-loop NTPase GO993_09895 PF00448 SRP54-type protein, GTPase domain GO993_09900 PF00771 FHIPEP family GO993_09905 PF01312 FlhB HrpN YscU SpaS Family GO993_09910 PF01311 Bacterial export proteins, family 1 GO993_09915 PF01313 Bacterial export proteins, family 3 GO993_09920 PF00813 FliP family GO993_09925 PF04347 Flagellar biosynthesis protein, FliO GO993_09930 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO993_09935 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO993_09935 PF02154 Flagellar motor switch protein FliM GO993_09965 PF01706 FliG C-terminal domain GO993_09965 PF14841 FliG middle domain GO993_09965 PF14842 FliG N-terminal domain GO993_09970 PF01514 Secretory protein of YscJ/FliF family GO993_09970 PF08345 Flagellar M-ring protein C-terminal GO993_09975 PF02049 Flagellar hook-basal body complex protein FliE GO993_10000 PF02001 Protein of unknown function DUF134 GO993_10015 PF00072 Response regulator receiver domain GO993_10020 PF00919 Uncharacterized protein family UPF0004 GO993_10020 PF18693 TRAM domain GO993_10020 PF04055 Radical SAM superfamily GO993_10040 PF02685 Glucokinase GO993_10045 PF01418 Helix-turn-helix domain, rpiR family GO993_10045 PF01380 SIS domain GO993_10050 PF00224 Pyruvate kinase, barrel domain GO993_10050 PF02887 Pyruvate kinase, alpha/beta domain GO993_10060 PF00873 AcrB/AcrD/AcrF family GO993_10065 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GO993_10065 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GO993_10065 PF02770 Acyl-CoA dehydrogenase, middle domain GO993_10065 PF09317 Domain of unknown function (DUF1974) GO993_10070 PF00440 Bacterial regulatory proteins, tetR family GO993_10080 PF01609 Transposase DDE domain GO993_10080 PF13808 DDE_Tnp_1-associated GO993_10090 PF01609 Transposase DDE domain GO993_10090 PF13808 DDE_Tnp_1-associated GO993_10100 PF13737 Transposase DDE domain GO993_10110 PF01406 tRNA synthetases class I (C) catalytic domain GO993_10110 PF09190 DALR domain GO993_10115 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GO993_10125 PF00149 Calcineurin-like phosphoesterase GO993_10130 PF04226 Transglycosylase associated protein GO993_10145 PF03466 LysR substrate binding domain GO993_10145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_10165 PF01066 CDP-alcohol phosphatidyltransferase GO993_10175 PF00072 Response regulator receiver domain GO993_10175 PF00196 Bacterial regulatory proteins, luxR family GO993_10185 PF03966 Trm112p-like protein GO993_10190 PF02606 Tetraacyldisaccharide-1-P 4'-kinase GO993_10195 PF00005 ABC transporter GO993_10195 PF00664 ABC transporter transmembrane region GO993_10220 PF00155 Aminotransferase class I and II GO993_10225 PF13737 Transposase DDE domain GO993_10235 PF13609 Gram-negative porin GO993_10250 PF00850 Histone deacetylase domain GO993_10255 PF01926 50S ribosome-binding GTPase GO993_10260 PF00245 Alkaline phosphatase GO993_10265 PF00245 Alkaline phosphatase GO993_10280 PF14760 Rnk N-terminus GO993_10280 PF01272 Transcription elongation factor, GreA/GreB, C-term GO993_10285 PF00196 Bacterial regulatory proteins, luxR family GO993_10285 PF00072 Response regulator receiver domain GO993_10290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_10290 PF07730 Histidine kinase GO993_10290 PF05231 MASE1 GO993_10295 PF07690 Major Facilitator Superfamily GO993_10300 PF08448 PAS fold GO993_10300 PF00990 Diguanylate cyclase, GGDEF domain GO993_10310 PF00528 Binding-protein-dependent transport system inner membrane component GO993_10315 PF00005 ABC transporter GO993_10325 PF13520 Amino acid permease GO993_10345 PF01895 PhoU domain GO993_10355 PF00528 Binding-protein-dependent transport system inner membrane component GO993_10360 PF00528 Binding-protein-dependent transport system inner membrane component GO993_10365 PF14437 MafB19-like deaminase GO993_10375 PF01274 Malate synthase GO993_10380 PF00463 Isocitrate lyase family GO993_10385 PF00308 Bacterial dnaA protein GO993_10400 PF02769 AIR synthase related protein, C-terminal domain GO993_10400 PF00586 AIR synthase related protein, N-terminal domain GO993_10405 PF00551 Formyl transferase GO993_10410 PF01784 NIF3 (NGG1p interacting factor 3) GO993_10415 PF00158 Sigma-54 interaction domain GO993_10415 PF00072 Response regulator receiver domain GO993_10415 PF02954 Bacterial regulatory protein, Fis family GO993_10420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_10420 PF00989 PAS fold GO993_10420 PF00512 His Kinase A (phospho-acceptor) domain GO993_10425 PF06490 Flagellar regulatory protein FleQ GO993_10425 PF02954 Bacterial regulatory protein, Fis family GO993_10425 PF00158 Sigma-54 interaction domain GO993_10440 PF17941 Polyphosphate kinase C-terminal domain 1 GO993_10440 PF02503 Polyphosphate kinase middle domain GO993_10440 PF13089 Polyphosphate kinase N-terminal domain GO993_10440 PF13090 Polyphosphate kinase C-terminal domain 2 GO993_10445 PF02541 Ppx/GppA phosphatase family GO993_10450 PF00571 CBS domain GO993_10450 PF01769 Divalent cation transporter GO993_10450 PF03448 MgtE intracellular N domain GO993_10455 PF13737 Transposase DDE domain GO993_10470 PF13737 Transposase DDE domain GO993_10490 PF12850 Calcineurin-like phosphoesterase superfamily domain GO993_10525 PF00892 EamA-like transporter family GO993_10555 PF00313 'Cold-shock' DNA-binding domain GO993_10560 PF02817 e3 binding domain GO993_10560 PF00364 Biotin-requiring enzyme GO993_10560 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO993_10575 PF13358 DDE superfamily endonuclease GO993_10575 PF13592 Winged helix-turn helix GO993_10580 PF02780 Transketolase, C-terminal domain GO993_10580 PF02779 Transketolase, pyrimidine binding domain GO993_10585 PF00676 Dehydrogenase E1 component GO993_10590 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family GO993_10600 PF05472 DNA replication terminus site-binding protein (Ter protein) GO993_10610 PF04337 Protein of unknown function, DUF480 GO993_10620 PF02397 Bacterial sugar transferase GO993_10625 PF13737 Transposase DDE domain GO993_10650 PF03466 LysR substrate binding domain GO993_10650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_10655 PF02447 GntP family permease GO993_10670 PF00180 Isocitrate/isopropylmalate dehydrogenase GO993_10710 PF13737 Transposase DDE domain GO993_10720 PF13808 DDE_Tnp_1-associated GO993_10720 PF01609 Transposase DDE domain GO993_10730 PF13737 Transposase DDE domain GO993_10735 PF04055 Radical SAM superfamily GO993_10735 PF11842 Domain of unknown function (DUF3362) GO993_10735 PF08497 Radical SAM N-terminal GO993_10750 PF13533 Biotin-lipoyl like GO993_10755 PF00990 Diguanylate cyclase, GGDEF domain GO993_10755 PF05230 MASE2 domain GO993_10765 PF00209 Sodium:neurotransmitter symporter family GO993_10780 PF01389 OmpA-like transmembrane domain GO993_10780 PF00691 OmpA family GO993_10785 PF00691 OmpA family GO993_10785 PF01389 OmpA-like transmembrane domain GO993_10790 PF01389 OmpA-like transmembrane domain GO993_10790 PF00691 OmpA family GO993_10795 PF03949 Malic enzyme, NAD binding domain GO993_10795 PF00390 Malic enzyme, N-terminal domain GO993_10800 PF12833 Helix-turn-helix domain GO993_10810 PF10692 Protein of unknown function (DUF2498) GO993_10815 PF00990 Diguanylate cyclase, GGDEF domain GO993_10815 PF00072 Response regulator receiver domain GO993_10820 PF00860 Permease family GO993_10830 PF01235 Sodium:alanine symporter family GO993_10835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GO993_10835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO993_10840 PF01699 Sodium/calcium exchanger protein GO993_10845 PF08534 Redoxin GO993_10845 PF00462 Glutaredoxin GO993_10875 PF00005 ABC transporter GO993_10880 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_10880 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO993_10885 PF03932 CutC family GO993_10900 PF01435 Peptidase family M48 GO993_10905 PF12849 PBP superfamily domain GO993_10915 PF00072 Response regulator receiver domain GO993_10915 PF00486 Transcriptional regulatory protein, C terminal GO993_10920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO993_10925 PF07694 5TMR of 5TMR-LYT GO993_10925 PF00990 Diguanylate cyclase, GGDEF domain GO993_10930 PF02954 Bacterial regulatory protein, Fis family GO993_10930 PF00158 Sigma-54 interaction domain GO993_10930 PF01590 GAF domain GO993_10935 PF00171 Aldehyde dehydrogenase family GO993_10940 PF01361 Tautomerase enzyme GO993_10955 PF03466 LysR substrate binding domain GO993_10955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_10975 PF00248 Aldo/keto reductase family GO993_10985 PF00072 Response regulator receiver domain GO993_10985 PF12431 Transcriptional regulator GO993_10995 PF00390 Malic enzyme, N-terminal domain GO993_10995 PF03949 Malic enzyme, NAD binding domain GO993_11035 PF13737 Transposase DDE domain GO993_11050 PF10282 Lactonase, 7-bladed beta-propeller GO993_11060 PF00672 HAMP domain GO993_11060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_11060 PF12729 Four helix bundle sensory module for signal transduction GO993_11065 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_11075 PF00860 Permease family GO993_11095 PF13247 4Fe-4S dicluster domain GO993_11145 PF13808 DDE_Tnp_1-associated GO993_11145 PF01609 Transposase DDE domain GO993_11160 PF02719 Polysaccharide biosynthesis protein GO993_11165 PF00953 Glycosyl transferase family 4 GO993_11170 PF01370 NAD dependent epimerase/dehydratase family GO993_11180 PF13737 Transposase DDE domain GO993_11190 PF13737 Transposase DDE domain GO993_11210 PF03600 Citrate transporter GO993_11210 PF02080 TrkA-C domain GO993_11230 PF02350 UDP-N-acetylglucosamine 2-epimerase GO993_11245 PF00005 ABC transporter GO993_11255 PF03958 Bacterial type II/III secretion system short domain GO993_11255 PF00263 Bacterial type II and III secretion system protein GO993_11295 PF08334 Type II secretion system (T2SS), protein G GO993_11295 PF07963 Prokaryotic N-terminal methylation motif GO993_11300 PF00482 Type II secretion system (T2SS), protein F GO993_11305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain GO993_11305 PF00437 Type II/IV secretion system protein GO993_11315 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase GO993_11320 PF00483 Nucleotidyl transferase GO993_11325 PF04321 RmlD substrate binding domain GO993_11330 PF16363 GDP-mannose 4,6 dehydratase GO993_11335 PF02321 Outer membrane efflux protein GO993_11350 PF00440 Bacterial regulatory proteins, tetR family GO993_11350 PF08361 MAATS-type transcriptional repressor, C-terminal region GO993_11370 PF01479 S4 domain GO993_11370 PF00849 RNA pseudouridylate synthase GO993_11375 PF04079 Segregation and condensation complex subunit ScpB GO993_11380 PF02616 Segregation and condensation protein ScpA GO993_11385 PF01300 Telomere recombination GO993_11390 PF02811 PHP domain GO993_11400 PF04715 Anthranilate synthase component I, N terminal region GO993_11400 PF00425 chorismate binding enzyme GO993_11405 PF00591 Glycosyl transferase family, a/b domain GO993_11405 PF02885 Glycosyl transferase family, helical bundle domain GO993_11405 PF00117 Glutamine amidotransferase class-I GO993_11410 PF02885 Glycosyl transferase family, helical bundle domain GO993_11410 PF00591 Glycosyl transferase family, a/b domain GO993_11415 PF00218 Indole-3-glycerol phosphate synthase GO993_11415 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GO993_11420 PF00291 Pyridoxal-phosphate dependent enzyme GO993_11425 PF00290 Tryptophan synthase alpha chain GO993_11435 PF13737 Transposase DDE domain GO993_11445 PF13737 Transposase DDE domain GO993_11450 PF03734 L,D-transpeptidase catalytic domain GO993_11450 PF17969 L,D-transpeptidase C-terminal domain GO993_11450 PF01476 LysM domain GO993_11460 PF01575 MaoC like domain GO993_11465 PF05971 RNA methyltransferase GO993_11470 PF00877 NlpC/P60 family GO993_11475 PF01648 4'-phosphopantetheinyl transferase superfamily GO993_11490 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GO993_11495 PF01842 ACT domain GO993_11495 PF00551 Formyl transferase GO993_11505 PF13091 PLD-like domain GO993_11505 PF13396 Phospholipase_D-nuclease N-terminal GO993_11525 PF00128 Alpha amylase, catalytic domain GO993_11530 PF01551 Peptidase family M23 GO993_11530 PF01464 Transglycosylase SLT domain GO993_11530 PF10145 Phage-related minor tail protein GO993_11540 PF02075 Crossover junction endodeoxyribonuclease RuvC GO993_11545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GO993_11560 PF13737 Transposase DDE domain GO993_11575 PF07690 Major Facilitator Superfamily GO993_11580 PF01040 UbiA prenyltransferase family GO993_11590 PF00115 Cytochrome C and Quinol oxidase polypeptide I GO993_11595 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GO993_11595 PF06481 COX Aromatic Rich Motif GO993_11605 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GO993_11605 PF00034 Cytochrome c GO993_11630 PF00127 Copper binding proteins, plastocyanin/azurin family GO993_11635 PF02424 ApbE family GO993_11650 PF13737 Transposase DDE domain GO993_11665 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_11690 PF00873 AcrB/AcrD/AcrF family GO993_11700 PF03099 Biotin/lipoate A/B protein ligase family GO993_11700 PF10437 Bacterial lipoate protein ligase C-terminus GO993_11705 PF00563 EAL domain GO993_11705 PF03707 Bacterial signalling protein N terminal repeat GO993_11705 PF00990 Diguanylate cyclase, GGDEF domain GO993_11710 PF00873 AcrB/AcrD/AcrF family GO993_11725 PF04143 Sulphur transport GO993_11745 PF02308 MgtC family GO993_11750 PF13407 Periplasmic binding protein domain GO993_11750 PF00356 Bacterial regulatory proteins, lacI family GO993_11755 PF08244 Glycosyl hydrolases family 32 C terminal GO993_11755 PF00251 Glycosyl hydrolases family 32 N-terminal domain GO993_11760 PF00367 phosphotransferase system, EIIB GO993_11760 PF02378 Phosphotransferase system, EIIC GO993_11770 PF11471 Maltoporin periplasmic N-terminal extension GO993_11770 PF02264 LamB porin GO993_11775 PF01556 DnaJ C terminal domain GO993_11775 PF00684 DnaJ central domain GO993_11775 PF00226 DnaJ domain GO993_11780 PF00012 Hsp70 protein GO993_11785 PF01025 GrpE GO993_11790 PF01513 ATP-NAD kinase GO993_11795 PF02463 RecF/RecN/SMC N terminal domain GO993_11805 PF02833 DHHA2 domain GO993_11805 PF01368 DHH family GO993_11815 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_11830 PF08021 Siderophore-interacting FAD-binding domain GO993_11830 PF04954 Siderophore-interacting protein GO993_11835 PF00793 DAHP synthetase I family GO993_11850 PF00816 H-NS histone family GO993_11860 PF13737 Transposase DDE domain GO993_11885 PF07883 Cupin domain GO993_11885 PF12833 Helix-turn-helix domain GO993_11895 PF13737 Transposase DDE domain GO993_11905 PF01381 Helix-turn-helix GO993_11905 PF07883 Cupin domain GO993_11915 PF00202 Aminotransferase class-III GO993_11920 PF00324 Amino acid permease GO993_11925 PF00324 Amino acid permease GO993_11930 PF02690 Na+/Pi-cotransporter GO993_11935 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase GO993_11935 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_11940 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase GO993_11955 PF01048 Phosphorylase superfamily GO993_11975 PF13358 DDE superfamily endonuclease GO993_11975 PF13592 Winged helix-turn helix GO993_11980 PF14821 Threonine synthase N terminus GO993_11980 PF00291 Pyridoxal-phosphate dependent enzyme GO993_11985 PF00288 GHMP kinases N terminal domain GO993_11985 PF08544 GHMP kinases C terminal GO993_11990 PF13840 ACT domain GO993_11990 PF01842 ACT domain GO993_11990 PF00742 Homoserine dehydrogenase GO993_11990 PF03447 Homoserine dehydrogenase, NAD binding domain GO993_11990 PF00696 Amino acid kinase family GO993_11995 PF00588 SpoU rRNA Methylase family GO993_12000 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) GO993_12015 PF03737 Aldolase/RraA GO993_12025 PF00486 Transcriptional regulatory protein, C terminal GO993_12025 PF00072 Response regulator receiver domain GO993_12040 PF00664 ABC transporter transmembrane region GO993_12040 PF00005 ABC transporter GO993_12045 PF00005 ABC transporter GO993_12045 PF00664 ABC transporter transmembrane region GO993_12065 PF18389 TrmO C-terminal domain GO993_12065 PF01980 tRNA-methyltransferase O GO993_12070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GO993_12070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GO993_12085 PF00291 Pyridoxal-phosphate dependent enzyme GO993_12090 PF00381 PTS HPr component phosphorylation site GO993_12095 PF02896 PEP-utilising enzyme, TIM barrel domain GO993_12095 PF05524 PEP-utilising enzyme, N-terminal GO993_12095 PF00391 PEP-utilising enzyme, mobile domain GO993_12100 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GO993_12105 PF00990 Diguanylate cyclase, GGDEF domain GO993_12105 PF08448 PAS fold GO993_12115 PF01292 Prokaryotic cytochrome b561 GO993_12125 PF13476 AAA domain GO993_12130 PF00149 Calcineurin-like phosphoesterase GO993_12130 PF12320 Type 5 capsule protein repressor C-terminal domain GO993_12140 PF04381 Putative exonuclease, RdgC GO993_12150 PF02254 TrkA-N domain GO993_12150 PF00999 Sodium/hydrogen exchanger family GO993_12155 PF00999 Sodium/hydrogen exchanger family GO993_12155 PF02254 TrkA-N domain GO993_12160 PF04151 Bacterial pre-peptidase C-terminal domain GO993_12160 PF04389 Peptidase family M28 GO993_12170 PF02887 Pyruvate kinase, alpha/beta domain GO993_12170 PF00224 Pyruvate kinase, barrel domain GO993_12175 PF12794 Mechanosensitive ion channel inner membrane domain 1 GO993_12175 PF12795 Mechanosensitive ion channel porin domain GO993_12175 PF00924 Mechanosensitive ion channel GO993_12180 PF13356 Arm DNA-binding domain GO993_12180 PF00589 Phage integrase family GO993_12190 PF13737 Transposase DDE domain GO993_12200 PF01047 MarR family GO993_12205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_12205 PF00529 HlyD membrane-fusion protein of T1SS GO993_12225 PF01679 Proteolipid membrane potential modulator GO993_12240 PF03477 ATP cone domain GO993_12240 PF13597 Anaerobic ribonucleoside-triphosphate reductase GO993_12250 PF01653 NAD-dependent DNA ligase adenylation domain GO993_12250 PF12826 Helix-hairpin-helix motif GO993_12250 PF03120 NAD-dependent DNA ligase OB-fold domain GO993_12250 PF00533 BRCA1 C Terminus (BRCT) domain GO993_12250 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GO993_12270 PF03458 UPF0126 domain GO993_12280 PF05951 Bacterial protein of unknown function (DUF882) GO993_12285 PF03734 L,D-transpeptidase catalytic domain GO993_12285 PF01471 Putative peptidoglycan binding domain GO993_12295 PF01609 Transposase DDE domain GO993_12295 PF13808 DDE_Tnp_1-associated GO993_12320 PF00579 tRNA synthetases class I (W and Y) GO993_12330 PF03702 Anhydro-N-acetylmuramic acid kinase GO993_12335 PF01609 Transposase DDE domain GO993_12335 PF13808 DDE_Tnp_1-associated GO993_12345 PF13737 Transposase DDE domain GO993_12365 PF02779 Transketolase, pyrimidine binding domain GO993_12365 PF00456 Transketolase, thiamine diphosphate binding domain GO993_12365 PF02780 Transketolase, C-terminal domain GO993_12370 PF02772 S-adenosylmethionine synthetase, central domain GO993_12370 PF02773 S-adenosylmethionine synthetase, C-terminal domain GO993_12370 PF00438 S-adenosylmethionine synthetase, N-terminal domain GO993_12375 PF10263 SprT-like family GO993_12375 PF17283 SprT-like zinc ribbon domain GO993_12380 PF04231 Endonuclease I GO993_12385 PF04452 RNA methyltransferase GO993_12390 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain GO993_12390 PF02951 Prokaryotic glutathione synthetase, N-terminal domain GO993_12400 PF13737 Transposase DDE domain GO993_12410 PF03652 Holliday junction resolvase GO993_12415 PF03466 LysR substrate binding domain GO993_12415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_12430 PF13737 Transposase DDE domain GO993_12440 PF17863 AAA lid domain GO993_12440 PF07726 ATPase family associated with various cellular activities (AAA) GO993_12455 PF01235 Sodium:alanine symporter family GO993_12460 PF13808 DDE_Tnp_1-associated GO993_12460 PF01609 Transposase DDE domain GO993_12465 PF00923 Transaldolase/Fructose-6-phosphate aldolase GO993_12480 PF03167 Uracil DNA glycosylase superfamily GO993_12490 PF13358 DDE superfamily endonuclease GO993_12490 PF13592 Winged helix-turn helix GO993_12495 PF01228 Glycine radical GO993_12500 PF00375 Sodium:dicarboxylate symporter family GO993_12505 PF00793 DAHP synthetase I family GO993_12510 PF13369 Transglutaminase-like superfamily GO993_12520 PF13847 Methyltransferase domain GO993_12520 PF17827 PrmC N-terminal domain GO993_12525 PF00472 RF-1 domain GO993_12525 PF03462 PCRF domain GO993_12530 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GO993_12530 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GO993_12530 PF01488 Shikimate / quinate 5-dehydrogenase GO993_12535 PF03550 Outer membrane lipoprotein LolB GO993_12540 PF00288 GHMP kinases N terminal domain GO993_12540 PF08544 GHMP kinases C terminal GO993_12550 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GO993_12550 PF14572 Phosphoribosyl synthetase-associated domain GO993_12555 PF00149 Calcineurin-like phosphoesterase GO993_12555 PF02872 5'-nucleotidase, C-terminal domain GO993_12560 PF01195 Peptidyl-tRNA hydrolase GO993_12565 PF01926 50S ribosome-binding GTPase GO993_12565 PF06071 Protein of unknown function (DUF933) GO993_12615 PF04973 Nicotinamide mononucleotide transporter GO993_12620 PF01048 Phosphorylase superfamily GO993_12645 PF13737 Transposase DDE domain GO993_12655 PF00535 Glycosyl transferase family 2 GO993_12670 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase GO993_12675 PF00892 EamA-like transporter family GO993_12685 PF00485 Phosphoribulokinase / Uridine kinase family GO993_12700 PF02566 OsmC-like protein GO993_12705 PF00027 Cyclic nucleotide-binding domain GO993_12705 PF13545 Crp-like helix-turn-helix domain GO993_12710 PF08241 Methyltransferase domain GO993_12720 PF12561 ToxR activated gene A lipoprotein domain GO993_12720 PF17945 Beta/Gamma crystallin GO993_12740 PF13443 Cro/C1-type HTH DNA-binding domain GO993_12750 PF12832 MFS_1 like family GO993_12775 PF01243 Pyridoxamine 5'-phosphate oxidase GO993_12780 PF06228 Haem utilisation ChuX/HutX GO993_12790 PF01032 FecCD transport family GO993_12795 PF00005 ABC transporter GO993_12815 PF12848 ABC transporter GO993_12815 PF00005 ABC transporter GO993_12825 PF00860 Permease family GO993_12830 PF05099 Tellurite resistance protein TerB GO993_12830 PF00226 DnaJ domain GO993_12845 PF04453 LPS transport system D GO993_12845 PF03968 OstA-like protein GO993_12850 PF00639 PPIC-type PPIASE domain GO993_12850 PF09312 SurA N-terminal domain GO993_12855 PF04166 Pyridoxal phosphate biosynthetic protein PdxA GO993_12860 PF00398 Ribosomal RNA adenine dimethylase GO993_12865 PF04379 ApaG domain GO993_12870 PF00149 Calcineurin-like phosphoesterase GO993_12905 PF13193 AMP-binding enzyme C-terminal domain GO993_12905 PF00501 AMP-binding enzyme GO993_12915 PF01018 GTP1/OBG GO993_12915 PF01926 50S ribosome-binding GTPase GO993_12920 PF01016 Ribosomal L27 protein GO993_12925 PF00829 Ribosomal prokaryotic L21 protein GO993_12930 PF00348 Polyprenyl synthetase GO993_12935 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) GO993_12940 PF01145 SPFH domain / Band 7 family GO993_12950 PF16360 GTP-binding GTPase Middle Region GO993_12950 PF13167 GTP-binding GTPase N-terminal GO993_12950 PF01926 50S ribosome-binding GTPase GO993_12955 PF17209 Hfq protein GO993_12975 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GO993_12985 PF08331 Domain of unknown function (DUF1730) GO993_13000 PF09383 NIL domain GO993_13000 PF00005 ABC transporter GO993_13005 PF00528 Binding-protein-dependent transport system inner membrane component GO993_13010 PF03180 NLPA lipoprotein GO993_13015 PF02357 Transcription termination factor nusG GO993_13025 PF03707 Bacterial signalling protein N terminal repeat GO993_13025 PF00990 Diguanylate cyclase, GGDEF domain GO993_13025 PF00563 EAL domain GO993_13040 PF01966 HD domain GO993_13070 PF03466 LysR substrate binding domain GO993_13070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_13090 PF00701 Dihydrodipicolinate synthetase family GO993_13095 PF01842 ACT domain GO993_13100 PF00578 AhpC/TSA family GO993_13105 PF03887 YfbU domain GO993_13110 PF04217 Protein of unknown function, DUF412 GO993_13115 PF00871 Acetokinase family GO993_13120 PF01515 Phosphate acetyl/butaryl transferase GO993_13120 PF07085 DRTGG domain GO993_13125 PF10369 Small subunit of acetolactate synthase GO993_13145 PF01569 PAP2 superfamily GO993_13155 PF08502 LeuA allosteric (dimerisation) domain GO993_13155 PF00682 HMGL-like GO993_13160 PF00180 Isocitrate/isopropylmalate dehydrogenase GO993_13165 PF00330 Aconitase family (aconitate hydratase) GO993_13170 PF00694 Aconitase C-terminal domain GO993_13190 PF00528 Binding-protein-dependent transport system inner membrane component GO993_13195 PF00005 ABC transporter GO993_13200 PF02562 PhoH-like protein GO993_13200 PF13638 PIN domain GO993_13210 PF02867 Ribonucleotide reductase, barrel domain GO993_13210 PF00317 Ribonucleotide reductase, all-alpha domain GO993_13210 PF08343 Ribonucleotide reductase N-terminal GO993_13240 PF01521 Iron-sulphur cluster biosynthesis GO993_13255 PF00202 Aminotransferase class-III GO993_13270 PF01569 PAP2 superfamily GO993_13285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_13285 PF03466 LysR substrate binding domain GO993_13290 PF00893 Small Multidrug Resistance protein GO993_13295 PF00893 Small Multidrug Resistance protein GO993_13300 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GO993_13320 PF17746 SfsA N-terminal OB domain GO993_13320 PF03749 Sugar fermentation stimulation protein RE domain GO993_13325 PF01258 Prokaryotic dksA/traR C4-type zinc finger GO993_13330 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO993_13335 PF12627 Probable RNA and SrmB- binding site of polymerase A GO993_13335 PF12626 Polymerase A arginine-rich C-terminus GO993_13335 PF01743 Poly A polymerase head domain GO993_13345 PF02548 Ketopantoate hydroxymethyltransferase GO993_13350 PF02569 Pantoate-beta-alanine ligase GO993_13360 PF01061 ABC-2 type transporter GO993_13365 PF00005 ABC transporter GO993_13370 PF00156 Phosphoribosyl transferase domain GO993_13375 PF00440 Bacterial regulatory proteins, tetR family GO993_13380 PF02441 Flavoprotein GO993_13390 PF00719 Inorganic pyrophosphatase GO993_13395 PF01208 Uroporphyrinogen decarboxylase (URO-D) GO993_13400 PF09297 NADH pyrophosphatase zinc ribbon domain GO993_13400 PF00293 NUDIX domain GO993_13405 PF14850 DNA-binding domain of Proline dehydrogenase GO993_13405 PF01619 Proline dehydrogenase GO993_13405 PF00171 Aldehyde dehydrogenase family GO993_13405 PF18327 Proline utilization A proline dehydrogenase N-terminal domain GO993_13410 PF08239 Bacterial SH3 domain GO993_13415 PF07885 Ion channel GO993_13415 PF00027 Cyclic nucleotide-binding domain GO993_13425 PF01641 SelR domain GO993_13430 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GO993_13430 PF00128 Alpha amylase, catalytic domain GO993_13435 PF02806 Alpha amylase, C-terminal all-beta domain GO993_13435 PF00128 Alpha amylase, catalytic domain GO993_13435 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GO993_13440 PF02446 4-alpha-glucanotransferase GO993_13445 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GO993_13445 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GO993_13450 PF01263 Aldose 1-epimerase GO993_13455 PF02445 Quinolinate synthetase A protein GO993_13460 PF00672 HAMP domain GO993_13460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_13525 PF16331 TolA binding protein trimerisation GO993_13525 PF13174 Tetratricopeptide repeat GO993_13530 PF00691 OmpA family GO993_13535 PF04052 TolB amino-terminal domain GO993_13535 PF07676 WD40-like Beta Propeller Repeat GO993_13550 PF01618 MotA/TolQ/ExbB proton channel family GO993_13555 PF03061 Thioesterase superfamily GO993_13560 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) GO993_13565 PF08173 Membrane bound YbgT-like protein GO993_13575 PF01654 Cytochrome bd terminal oxidase subunit I GO993_13585 PF01330 RuvA N terminal domain GO993_13585 PF07499 RuvA, C-terminal domain GO993_13590 PF00672 HAMP domain GO993_13590 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_13595 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GO993_13595 PF03129 Anticodon binding domain GO993_13595 PF04073 Aminoacyl-tRNA editing domain GO993_13605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GO993_13610 PF00583 Acetyltransferase (GNAT) family GO993_13615 PF03144 Elongation factor Tu domain 2 GO993_13615 PF16658 Class II release factor RF3, C-terminal domain GO993_13615 PF00009 Elongation factor Tu GTP binding domain GO993_13620 PF00990 Diguanylate cyclase, GGDEF domain GO993_13620 PF00072 Response regulator receiver domain GO993_13630 PF01037 Lrp/AsnC ligand binding domain GO993_13655 PF13673 Acetyltransferase (GNAT) domain GO993_13655 PF00583 Acetyltransferase (GNAT) family GO993_13665 PF00501 AMP-binding enzyme GO993_13675 PF04262 Glutamate-cysteine ligase GO993_13680 PF00675 Insulinase (Peptidase family M16) GO993_13680 PF05193 Peptidase M16 inactive domain GO993_13685 PF09335 SNARE associated Golgi protein GO993_13715 PF00970 Oxidoreductase FAD-binding domain GO993_13715 PF00175 Oxidoreductase NAD-binding domain GO993_13720 PF01281 Ribosomal protein L9, N-terminal domain GO993_13720 PF03948 Ribosomal protein L9, C-terminal domain GO993_13725 PF01084 Ribosomal protein S18 GO993_13730 PF01250 Ribosomal protein S6 GO993_13735 PF01566 Natural resistance-associated macrophage protein GO993_13740 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO993_13740 PF01411 tRNA synthetases class II (A) GO993_13740 PF02272 DHHA1 domain GO993_13755 PF13673 Acetyltransferase (GNAT) domain GO993_13765 PF00588 SpoU rRNA Methylase family GO993_13765 PF08032 RNA 2'-O ribose methyltransferase substrate binding GO993_13770 PF00773 RNB domain GO993_13770 PF08206 Ribonuclease B OB domain GO993_13770 PF17876 Cold shock domain GO993_13770 PF08461 Ribonuclease R winged-helix domain GO993_13770 PF00575 S1 RNA binding domain GO993_13775 PF00990 Diguanylate cyclase, GGDEF domain GO993_13780 PF02664 S-Ribosylhomocysteinase (LuxS) GO993_13790 PF00543 Nitrogen regulatory protein P-II GO993_13795 PF00795 Carbon-nitrogen hydrolase GO993_13795 PF02540 NAD synthase GO993_13810 PF05567 Neisseria PilC beta-propeller domain GO993_13830 PF07963 Prokaryotic N-terminal methylation motif GO993_13830 PF14245 Type IV pilin PilA GO993_13835 PF02401 LytB protein GO993_13840 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GO993_13850 PF08264 Anticodon-binding domain of tRNA GO993_13850 PF00133 tRNA synthetases class I (I, L, M and V) GO993_13850 PF06827 Zinc finger found in FPG and IleRS GO993_13855 PF01687 Riboflavin kinase GO993_13855 PF06574 FAD synthetase GO993_13865 PF01649 Ribosomal protein S20 GO993_13870 PF01022 Bacterial regulatory protein, arsR family GO993_13875 PF03466 LysR substrate binding domain GO993_13875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_13885 PF06965 Na+/H+ antiporter 1 GO993_13890 PF00303 Thymidylate synthase GO993_13895 PF01790 Prolipoprotein diacylglyceryl transferase GO993_13905 PF13737 Transposase DDE domain GO993_13915 PF00293 NUDIX domain GO993_13920 PF02976 DNA mismatch repair enzyme MutH GO993_13930 PF01245 Ribosomal protein L19 GO993_13935 PF01746 tRNA (Guanine-1)-methyltransferase GO993_13940 PF05239 PRC-barrel domain GO993_13940 PF01782 RimM N-terminal domain GO993_13945 PF00886 Ribosomal protein S16 GO993_13950 PF02881 SRP54-type protein, helical bundle domain GO993_13950 PF00448 SRP54-type protein, GTPase domain GO993_13950 PF02978 Signal peptide binding domain GO993_13955 PF01578 Cytochrome C assembly protein GO993_13960 PF03471 Transporter associated domain GO993_13960 PF01595 Cyclin M transmembrane N-terminal domain GO993_13960 PF00571 CBS domain GO993_13965 PF02082 Transcriptional regulator GO993_13970 PF00970 Oxidoreductase FAD-binding domain GO993_13970 PF00042 Globin GO993_13970 PF00175 Oxidoreductase NAD-binding domain GO993_13975 PF08238 Sel1 repeat GO993_13980 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GO993_13980 PF00056 lactate/malate dehydrogenase, NAD binding domain GO993_13985 PF00528 Binding-protein-dependent transport system inner membrane component GO993_13990 PF00528 Binding-protein-dependent transport system inner membrane component GO993_13995 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_14000 PF00005 ABC transporter GO993_14005 PF02863 Arginine repressor, C-terminal domain GO993_14005 PF01316 Arginine repressor, DNA binding domain GO993_14010 PF04261 Dyp-type peroxidase family GO993_14015 PF00005 ABC transporter GO993_14015 PF08402 TOBE domain GO993_14025 PF13416 Bacterial extracellular solute-binding protein GO993_14030 PF00543 Nitrogen regulatory protein P-II GO993_14035 PF13737 Transposase DDE domain GO993_14050 PF00909 Ammonium Transporter Family GO993_14055 PF05958 tRNA (Uracil-5-)-methyltransferase GO993_14055 PF01938 TRAM domain GO993_14060 PF00583 Acetyltransferase (GNAT) family GO993_14070 PF01026 TatD related DNase GO993_14085 PF01791 DeoC/LacD family aldolase GO993_14090 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GO993_14090 PF02885 Glycosyl transferase family, helical bundle domain GO993_14090 PF00591 Glycosyl transferase family, a/b domain GO993_14095 PF01676 Metalloenzyme superfamily GO993_14100 PF01048 Phosphorylase superfamily GO993_14110 PF18429 Domain of unknown function (DUF5609) GO993_14125 PF18073 Rubredoxin metal binding domain GO993_14130 PF07238 PilZ domain GO993_14135 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ GO993_14145 PF00216 Bacterial DNA-binding protein GO993_14160 PF01207 Dihydrouridine synthase (Dus) GO993_14165 PF01475 Ferric uptake regulator family GO993_14180 PF05525 Branched-chain amino acid transport protein GO993_14185 PF05175 Methyltransferase small domain GO993_14190 PF00270 DEAD/DEAH box helicase GO993_14190 PF00271 Helicase conserved C-terminal domain GO993_14195 PF03883 Peroxide stress protein YaaA GO993_14200 PF00437 Type II/IV secretion system protein GO993_14205 PF00437 Type II/IV secretion system protein GO993_14210 PF01168 Alanine racemase, N-terminal domain GO993_14215 PF14748 Pyrroline-5-carboxylate reductase dimerisation GO993_14215 PF03807 NADP oxidoreductase coenzyme F420-dependent GO993_14220 PF02325 YGGT family GO993_14225 PF02594 Uncharacterised ACR, YggU family COG1872 GO993_14250 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_14255 PF10952 Protein of unknown function (DUF2753) GO993_14275 PF00106 short chain dehydrogenase GO993_14280 PF03466 LysR substrate binding domain GO993_14280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_14285 PF04371 Porphyromonas-type peptidyl-arginine deiminase GO993_14290 PF01425 Amidase GO993_14305 PF13737 Transposase DDE domain GO993_14320 PF00543 Nitrogen regulatory protein P-II GO993_14325 PF00072 Response regulator receiver domain GO993_14325 PF00990 Diguanylate cyclase, GGDEF domain GO993_14345 PF00990 Diguanylate cyclase, GGDEF domain GO993_14355 PF00313 'Cold-shock' DNA-binding domain GO993_14360 PF00990 Diguanylate cyclase, GGDEF domain GO993_14360 PF17151 Periplasmic sensor domain GO993_14370 PF00196 Bacterial regulatory proteins, luxR family GO993_14375 PF00436 Single-strand binding protein family GO993_14385 PF13737 Transposase DDE domain GO993_14415 PF00271 Helicase conserved C-terminal domain GO993_14415 PF00270 DEAD/DEAH box helicase GO993_14425 PF08534 Redoxin GO993_14430 PF00403 Heavy-metal-associated domain GO993_14450 PF02583 Metal-sensitive transcriptional repressor GO993_14460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_14460 PF03466 LysR substrate binding domain GO993_14470 PF04055 Radical SAM superfamily GO993_14475 PF11230 Protein of unknown function (DUF3029) GO993_14515 PF00535 Glycosyl transferase family 2 GO993_14520 PF14883 Hypothetical glycosyl hydrolase family 13 GO993_14520 PF01522 Polysaccharide deacetylase GO993_14565 PF00005 ABC transporter GO993_14565 PF12857 TOBE-like domain GO993_14570 PF00528 Binding-protein-dependent transport system inner membrane component GO993_14575 PF00528 Binding-protein-dependent transport system inner membrane component GO993_14590 PF13737 Transposase DDE domain GO993_14600 PF13194 Domain of unknown function (DUF4010) GO993_14605 PF12464 Maltose acetyltransferase GO993_14605 PF14602 Hexapeptide repeat of succinyl-transferase GO993_14635 PF14552 Tautomerase enzyme GO993_14645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_14645 PF03466 LysR substrate binding domain GO993_14650 PF00206 Lyase GO993_14650 PF14698 Argininosuccinate lyase C-terminal GO993_14660 PF13737 Transposase DDE domain GO993_14680 PF13737 Transposase DDE domain GO993_14695 PF06055 Exopolysaccharide synthesis, ExoD GO993_14705 PF08803 Putative mono-oxygenase ydhR GO993_14735 PF07715 TonB-dependent Receptor Plug Domain GO993_14735 PF00593 TonB dependent receptor GO993_14740 PF13737 Transposase DDE domain GO993_14755 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GO993_14770 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase GO993_14780 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GO993_14780 PF03900 Porphobilinogen deaminase, C-terminal domain GO993_14795 PF01491 Frataxin-like domain GO993_14805 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GO993_14805 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GO993_14820 PF02899 Phage integrase, N-terminal SAM-like domain GO993_14820 PF00589 Phage integrase family GO993_14825 PF13419 Haloacid dehalogenase-like hydrolase GO993_14845 PF07722 Peptidase C26 GO993_14865 PF00005 ABC transporter GO993_14875 PF02464 Competence-damaged protein GO993_14875 PF00994 Probable molybdopterin binding domain GO993_14880 PF01966 HD domain GO993_14880 PF12072 Domain of unknown function (DUF3552) GO993_14880 PF00013 KH domain GO993_14885 PF04204 Homoserine O-succinyltransferase GO993_14895 PF01037 Lrp/AsnC ligand binding domain GO993_14900 PF00884 Sulfatase GO993_14940 PF00106 short chain dehydrogenase GO993_14945 PF03577 Peptidase family C69 GO993_14970 PF01053 Cys/Met metabolism PLP-dependent enzyme GO993_14980 PF12793 Sugar transport-related sRNA regulator N-term GO993_14980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GO993_15000 PF03280 Proteobacterial lipase chaperone protein GO993_15005 PF00561 alpha/beta hydrolase fold GO993_15020 PF02698 DUF218 domain GO993_15025 PF01752 Collagenase GO993_15025 PF08453 Peptidase family M9 N-terminal GO993_15035 PF13737 Transposase DDE domain GO993_15045 PF03989 DNA gyrase C-terminal domain, beta-propeller GO993_15045 PF00521 DNA gyrase/topoisomerase IV, subunit A GO993_15050 PF00986 DNA gyrase B subunit, carboxyl terminus GO993_15050 PF01751 Toprim domain GO993_15050 PF00204 DNA gyrase B GO993_15050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_15060 PF00293 NUDIX domain GO993_15065 PF05728 Uncharacterised protein family (UPF0227) GO993_15070 PF00149 Calcineurin-like phosphoesterase GO993_15075 PF06853 Protein of unknown function (DUF1249) GO993_15080 PF00293 NUDIX domain GO993_15085 PF02321 Outer membrane efflux protein GO993_15090 PF00294 pfkB family carbohydrate kinase GO993_15090 PF01467 Cytidylyltransferase-like GO993_15095 PF03279 Bacterial lipid A biosynthesis acyltransferase GO993_15110 PF01865 Protein of unknown function DUF47 GO993_15115 PF01384 Phosphate transporter family GO993_15120 PF12627 Probable RNA and SrmB- binding site of polymerase A GO993_15120 PF01743 Poly A polymerase head domain GO993_15120 PF01966 HD domain GO993_15125 PF01471 Putative peptidoglycan binding domain GO993_15125 PF13401 AAA domain GO993_15130 PF16537 Type II secretion system protein B GO993_15135 PF00633 Helix-hairpin-helix motif GO993_15135 PF14815 NUDIX domain GO993_15135 PF00730 HhH-GPD superfamily base excision DNA repair protein GO993_15135 PF10576 Iron-sulfur binding domain of endonuclease III GO993_15140 PF04362 Bacterial Fe(2+) trafficking GO993_15145 PF01464 Transglycosylase SLT domain GO993_15145 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain GO993_15150 PF04076 Bacterial OB fold (BOF) protein GO993_15155 PF00657 GDSL-like Lipase/Acylhydrolase GO993_15165 PF01389 OmpA-like transmembrane domain GO993_15165 PF00691 OmpA family GO993_15170 PF03886 ABC-type transport auxiliary lipoprotein component GO993_15175 PF02470 MlaD protein GO993_15185 PF17209 Hfq protein GO993_15190 PF13419 Haloacid dehalogenase-like hydrolase GO993_15205 PF00701 Dihydrodipicolinate synthetase family GO993_15210 PF08468 Methyltransferase small domain N-terminal GO993_15210 PF05175 Methyltransferase small domain GO993_15215 PF00483 Nucleotidyl transferase GO993_15220 PF00534 Glycosyl transferases group 1 GO993_15220 PF08323 Starch synthase catalytic domain GO993_15255 PF03553 Na+/H+ antiporter family GO993_15265 PF14602 Hexapeptide repeat of succinyl-transferase GO993_15265 PF12464 Maltose acetyltransferase GO993_15270 PF11941 Domain of unknown function (DUF3459) GO993_15270 PF00128 Alpha amylase, catalytic domain GO993_15275 PF00367 phosphotransferase system, EIIB GO993_15275 PF02378 Phosphotransferase system, EIIC GO993_15295 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GO993_15305 PF00232 Glycosyl hydrolase family 1 GO993_15310 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GO993_15315 PF00480 ROK family GO993_15325 PF00356 Bacterial regulatory proteins, lacI family GO993_15335 PF00710 Asparaginase, N-terminal GO993_15335 PF17763 Glutaminase/Asparaginase C-terminal domain GO993_15350 PF02142 MGS-like domain GO993_15360 PF00210 Ferritin-like domain GO993_15375 PF17176 tRNA-binding domain GO993_15375 PF05127 Helicase GO993_15375 PF08351 Domain of unknown function (DUF1726) GO993_15375 PF13718 GNAT acetyltransferase 2 GO993_15380 PF00106 short chain dehydrogenase GO993_15385 PF00072 Response regulator receiver domain GO993_15385 PF01584 CheW-like domain GO993_15410 PF13737 Transposase DDE domain GO993_15425 PF01609 Transposase DDE domain GO993_15425 PF13808 DDE_Tnp_1-associated GO993_15430 PF00589 Phage integrase family GO993_15430 PF13356 Arm DNA-binding domain GO993_15445 PF03739 Lipopolysaccharide export system permease LptF/LptG GO993_15450 PF03739 Lipopolysaccharide export system permease LptF/LptG GO993_15460 PF04364 DNA polymerase III chi subunit, HolC GO993_15465 PF10458 Valyl tRNA synthetase tRNA binding arm GO993_15465 PF00133 tRNA synthetases class I (I, L, M and V) GO993_15465 PF08264 Anticodon-binding domain of tRNA GO993_15480 PF00768 D-alanyl-D-alanine carboxypeptidase GO993_15505 PF02599 Global regulator protein family GO993_15510 PF01842 ACT domain GO993_15510 PF13840 ACT domain GO993_15510 PF00696 Amino acid kinase family GO993_15515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GO993_15515 PF01411 tRNA synthetases class II (A) GO993_15515 PF02272 DHHA1 domain GO993_15520 PF02631 RecX family GO993_15525 PF00154 recA bacterial DNA recombination protein GO993_15535 PF04073 Aminoacyl-tRNA editing domain GO993_15555 PF00155 Aminotransferase class I and II GO993_15555 PF00392 Bacterial regulatory proteins, gntR family GO993_15570 PF03788 LrgA family GO993_15575 PF04172 LrgB-like family GO993_15590 PF03447 Homoserine dehydrogenase, NAD binding domain GO993_15590 PF00742 Homoserine dehydrogenase GO993_15590 PF00696 Amino acid kinase family GO993_15600 PF01340 Met Apo-repressor, MetJ GO993_15605 PF12833 Helix-turn-helix domain GO993_15605 PF02311 AraC-like ligand binding domain GO993_15610 PF01588 Putative tRNA binding domain GO993_15615 PF03222 Tryptophan/tyrosine permease family GO993_15620 PF00459 Inositol monophosphatase family GO993_15625 PF00293 NUDIX domain GO993_15630 PF13419 Haloacid dehalogenase-like hydrolase GO993_15635 PF01479 S4 domain GO993_15635 PF00579 tRNA synthetases class I (W and Y) GO993_15640 PF00196 Bacterial regulatory proteins, luxR family GO993_15645 PF01203 Type II secretion system (T2SS), protein N GO993_15650 PF04612 Type II secretion system (T2SS), protein M GO993_15655 PF12693 GspL periplasmic domain GO993_15655 PF05134 Type II secretion system (T2SS), protein L GO993_15660 PF03934 Type II secretion system (T2SS), protein K GO993_15665 PF07963 Prokaryotic N-terminal methylation motif GO993_15665 PF11612 Type II secretion system (T2SS), protein J GO993_15670 PF07963 Prokaryotic N-terminal methylation motif GO993_15670 PF02501 Type II secretion system (T2SS), protein I GO993_15680 PF07963 Prokaryotic N-terminal methylation motif GO993_15680 PF08334 Type II secretion system (T2SS), protein G GO993_15690 PF00437 Type II/IV secretion system protein GO993_15695 PF00263 Bacterial type II and III secretion system protein GO993_15695 PF03958 Bacterial type II/III secretion system short domain GO993_15700 PF11356 Type II secretion system protein C GO993_15705 PF01479 S4 domain GO993_15710 PF01430 Hsp33 protein GO993_15715 PF01293 Phosphoenolpyruvate carboxykinase GO993_15720 PF00392 Bacterial regulatory proteins, gntR family GO993_15725 PF01321 Creatinase/Prolidase N-terminal domain GO993_15725 PF00557 Metallopeptidase family M24 GO993_15730 PF11756 Nitrous oxide-stimulated promoter GO993_15735 PF00583 Acetyltransferase (GNAT) family GO993_15740 PF05433 Glycine zipper 2TM domain GO993_15745 PF02872 5'-nucleotidase, C-terminal domain GO993_15745 PF00149 Calcineurin-like phosphoesterase GO993_15750 PF01810 LysE type translocator GO993_15755 PF00196 Bacterial regulatory proteins, luxR family GO993_15755 PF03472 Autoinducer binding domain GO993_15760 PF00765 Autoinducer synthase GO993_15765 PF03466 LysR substrate binding domain GO993_15765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_15770 PF08206 Ribonuclease B OB domain GO993_15770 PF00773 RNB domain GO993_15770 PF17876 Cold shock domain GO993_15790 PF01232 Mannitol dehydrogenase Rossmann domain GO993_15790 PF08125 Mannitol dehydrogenase C-terminal domain GO993_15795 PF05068 Mannitol repressor GO993_15800 PF03471 Transporter associated domain GO993_15800 PF02080 TrkA-C domain GO993_15800 PF00999 Sodium/hydrogen exchanger family GO993_15805 PF01556 DnaJ C terminal domain GO993_15805 PF00684 DnaJ central domain GO993_15805 PF00226 DnaJ domain GO993_15820 PF01544 CorA-like Mg2+ transporter protein GO993_15825 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GO993_15840 PF04307 LexA-binding, inner membrane-associated putative hydrolase GO993_15845 PF07662 Na+ dependent nucleoside transporter C-terminus GO993_15845 PF07670 Nucleoside recognition GO993_15845 PF01773 Na+ dependent nucleoside transporter N-terminus GO993_15855 PF13737 Transposase DDE domain GO993_15865 PF00270 DEAD/DEAH box helicase GO993_15865 PF03880 DbpA RNA binding domain GO993_15865 PF00271 Helicase conserved C-terminal domain GO993_15885 PF01609 Transposase DDE domain GO993_15885 PF13808 DDE_Tnp_1-associated GO993_15900 PF01040 UbiA prenyltransferase family GO993_15910 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO993_15910 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO993_15910 PF16582 Middle domain of thiamine pyrophosphate GO993_15915 PF12697 Alpha/beta hydrolase family GO993_15920 PF00378 Enoyl-CoA hydratase/isomerase GO993_15930 PF00501 AMP-binding enzyme GO993_15935 PF13737 Transposase DDE domain GO993_15945 PF00472 RF-1 domain GO993_15950 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GO993_15950 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GO993_15955 PF07662 Na+ dependent nucleoside transporter C-terminus GO993_15955 PF01773 Na+ dependent nucleoside transporter N-terminus GO993_15955 PF07670 Nucleoside recognition GO993_15960 PF03466 LysR substrate binding domain GO993_15960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_15965 PF00255 Glutathione peroxidase GO993_15975 PF02595 Glycerate kinase family GO993_15980 PF02447 GntP family permease GO993_15985 PF13556 PucR C-terminal helix-turn-helix domain GO993_15985 PF17853 GGDEF-like domain GO993_15985 PF05651 Putative sugar diacid recognition GO993_15990 PF06062 Uncharacterised protein family (UPF0231) GO993_16010 PF13737 Transposase DDE domain GO993_16025 PF13737 Transposase DDE domain GO993_16055 PF00226 DnaJ domain GO993_16055 PF00684 DnaJ central domain GO993_16055 PF01556 DnaJ C terminal domain GO993_16060 PF07681 DoxX GO993_16065 PF00085 Thioredoxin GO993_16085 PF01553 Acyltransferase GO993_16105 PF01541 GIY-YIG catalytic domain GO993_16120 PF03167 Uracil DNA glycosylase superfamily GO993_16135 PF00950 ABC 3 transport family GO993_16140 PF00005 ABC transporter GO993_16145 PF01297 Zinc-uptake complex component A periplasmic GO993_16165 PF08525 Opacity-associated protein A N-terminal motif GO993_16165 PF01476 LysM domain GO993_16165 PF01551 Peptidase family M23 GO993_16170 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO993_16175 PF04222 Protein of unknown function (DUF416) GO993_16190 PF02028 BCCT, betaine/carnitine/choline family transporter GO993_16205 PF06953 Arsenical resistance operon trans-acting repressor ArsD GO993_16215 PF01758 Sodium Bile acid symporter family GO993_16220 PF03960 ArsC family GO993_16225 PF13737 Transposase DDE domain GO993_16240 PF00311 Phosphoenolpyruvate carboxylase GO993_16245 PF07687 Peptidase dimerisation domain GO993_16245 PF01546 Peptidase family M20/M25/M40 GO993_16250 PF02774 Semialdehyde dehydrogenase, dimerisation domain GO993_16250 PF01118 Semialdehyde dehydrogenase, NAD binding domain GO993_16260 PF13737 Transposase DDE domain GO993_16275 PF13808 DDE_Tnp_1-associated GO993_16275 PF01609 Transposase DDE domain GO993_16280 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GO993_16285 PF02719 Polysaccharide biosynthesis protein GO993_16290 PF00128 Alpha amylase, catalytic domain GO993_16290 PF02903 Alpha amylase, N-terminal ig-like domain GO993_16310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GO993_16310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GO993_16315 PF05981 CreA protein GO993_16325 PF01258 Prokaryotic dksA/traR C4-type zinc finger GO993_16335 PF00202 Aminotransferase class-III GO993_16340 PF13416 Bacterial extracellular solute-binding protein GO993_16350 PF08402 TOBE domain GO993_16350 PF00005 ABC transporter GO993_16355 PF00528 Binding-protein-dependent transport system inner membrane component GO993_16360 PF00528 Binding-protein-dependent transport system inner membrane component GO993_16365 PF03475 3-alpha domain GO993_16365 PF03473 MOSC domain GO993_16380 PF03061 Thioesterase superfamily GO993_16385 PF00271 Helicase conserved C-terminal domain GO993_16385 PF00270 DEAD/DEAH box helicase GO993_16385 PF09382 RQC domain GO993_16385 PF00570 HRDC domain GO993_16385 PF16124 RecQ zinc-binding GO993_16390 PF00034 Cytochrome c GO993_16395 PF02696 Uncharacterized ACR, YdiU/UPF0061 family GO993_16405 PF02592 Putative vitamin uptake transporter GO993_16410 PF03737 Aldolase/RraA GO993_16415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_16415 PF00672 HAMP domain GO993_16420 PF01769 Divalent cation transporter GO993_16420 PF03448 MgtE intracellular N domain GO993_16420 PF00571 CBS domain GO993_16425 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GO993_16425 PF14824 Sirohaem biosynthesis protein central GO993_16425 PF10414 Sirohaem synthase dimerisation region GO993_16430 PF01226 Formate/nitrite transporter GO993_16435 PF13806 Rieske-like [2Fe-2S] domain GO993_16440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GO993_16440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GO993_16440 PF04324 BFD-like [2Fe-2S] binding domain GO993_16440 PF18267 Rubredoxin NAD+ reductase C-terminal domain GO993_16440 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_16445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_16445 PF03466 LysR substrate binding domain GO993_16450 PF07690 Major Facilitator Superfamily GO993_16455 PF10431 C-terminal, D2-small domain, of ClpB protein GO993_16455 PF07724 AAA domain (Cdc48 subfamily) GO993_16455 PF00004 ATPase family associated with various cellular activities (AAA) GO993_16460 PF00227 Proteasome subunit GO993_16470 PF00750 tRNA synthetases class I (R) GO993_16470 PF05746 DALR anticodon binding domain GO993_16470 PF03485 Arginyl tRNA synthetase N terminal domain GO993_16480 PF04542 Sigma-70 region 2 GO993_16480 PF04545 Sigma-70, region 4 GO993_16490 PF02673 Bacitracin resistance protein BacA GO993_16495 PF00248 Aldo/keto reductase family GO993_16500 PF01263 Aldose 1-epimerase GO993_16505 PF08544 GHMP kinases C terminal GO993_16505 PF00288 GHMP kinases N terminal domain GO993_16505 PF10509 Galactokinase galactose-binding signature GO993_16510 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GO993_16510 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GO993_16515 PF16363 GDP-mannose 4,6 dehydratase GO993_16520 PF00356 Bacterial regulatory proteins, lacI family GO993_16525 PF02836 Glycosyl hydrolases family 2, TIM barrel domain GO993_16525 PF16353 Domain of unknown function(DUF4981) GO993_16525 PF02929 Beta galactosidase small chain GO993_16525 PF00703 Glycosyl hydrolases family 2 GO993_16525 PF02837 Glycosyl hydrolases family 2, sugar binding domain GO993_16530 PF13407 Periplasmic binding protein domain GO993_16535 PF00005 ABC transporter GO993_16540 PF02653 Branched-chain amino acid transport system / permease component GO993_16545 PF02743 Cache domain GO993_16545 PF00672 HAMP domain GO993_16545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_16565 PF13808 DDE_Tnp_1-associated GO993_16565 PF01609 Transposase DDE domain GO993_16595 PF06628 Catalase-related immune-responsive GO993_16595 PF00199 Catalase GO993_16600 PF00583 Acetyltransferase (GNAT) family GO993_16620 PF00990 Diguanylate cyclase, GGDEF domain GO993_16630 PF08402 TOBE domain GO993_16630 PF00005 ABC transporter GO993_16640 PF00528 Binding-protein-dependent transport system inner membrane component GO993_16655 PF07702 UTRA domain GO993_16655 PF00392 Bacterial regulatory proteins, gntR family GO993_16665 PF03466 LysR substrate binding domain GO993_16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_16675 PF02678 Pirin GO993_16675 PF17954 Quercetinase C-terminal cupin domain GO993_16680 PF07681 DoxX GO993_16685 PF17946 RecC C-terminal domain GO993_16690 PF00580 UvrD/REP helicase N-terminal domain GO993_16690 PF13361 UvrD-like helicase C-terminal domain GO993_16690 PF12705 PD-(D/E)XK nuclease superfamily GO993_16695 PF13538 UvrD-like helicase C-terminal domain GO993_16705 PF13737 Transposase DDE domain GO993_16730 PF13737 Transposase DDE domain GO993_16770 PF05958 tRNA (Uracil-5-)-methyltransferase GO993_16775 PF00072 Response regulator receiver domain GO993_16775 PF00486 Transcriptional regulatory protein, C terminal GO993_16780 PF00672 HAMP domain GO993_16780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_16780 PF00512 His Kinase A (phospho-acceptor) domain GO993_16790 PF03949 Malic enzyme, NAD binding domain GO993_16790 PF00390 Malic enzyme, N-terminal domain GO993_16800 PF01197 Ribosomal protein L31 GO993_16805 PF00271 Helicase conserved C-terminal domain GO993_16805 PF18074 Primosomal protein N C-terminal domain GO993_16805 PF00270 DEAD/DEAH box helicase GO993_16805 PF17764 3′ DNA-binding domain (3′BD) GO993_16805 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GO993_16815 PF00440 Bacterial regulatory proteins, tetR family GO993_16825 PF01389 OmpA-like transmembrane domain GO993_16825 PF00691 OmpA family GO993_16830 PF00585 C-terminal regulatory domain of Threonine dehydratase GO993_16830 PF00291 Pyridoxal-phosphate dependent enzyme GO993_16835 PF00920 Dehydratase family GO993_16850 PF00205 Thiamine pyrophosphate enzyme, central domain GO993_16850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GO993_16850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GO993_16855 PF01078 Magnesium chelatase, subunit ChlI GO993_16855 PF13335 Magnesium chelatase, subunit ChlI C-terminal GO993_16865 PF04463 Protein of unknown function (DUF523) GO993_16875 PF00857 Isochorismatase family GO993_16880 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GO993_16880 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GO993_16890 PF00005 ABC transporter GO993_16900 PF01323 DSBA-like thioredoxin domain GO993_16905 PF01636 Phosphotransferase enzyme family GO993_16910 PF13746 4Fe-4S dicluster domain GO993_16910 PF12801 4Fe-4S binding domain GO993_16910 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase GO993_16915 PF06288 Protein of unknown function (DUF1040) GO993_16920 PF00990 Diguanylate cyclase, GGDEF domain GO993_16920 PF00360 Phytochrome region GO993_16920 PF00563 EAL domain GO993_16920 PF01590 GAF domain GO993_16925 PF13411 MerR HTH family regulatory protein GO993_16930 PF00403 Heavy-metal-associated domain GO993_16935 PF00156 Phosphoribosyl transferase domain GO993_16940 PF03725 3' exoribonuclease family, domain 2 GO993_16940 PF01138 3' exoribonuclease family, domain 1 GO993_16960 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) GO993_16980 PF13737 Transposase DDE domain GO993_16990 PF13808 DDE_Tnp_1-associated GO993_16990 PF01609 Transposase DDE domain GO993_16995 PF13358 DDE superfamily endonuclease GO993_16995 PF13592 Winged helix-turn helix GO993_17005 PF01370 NAD dependent epimerase/dehydratase family GO993_17015 PF00155 Aminotransferase class I and II GO993_17035 PF13737 Transposase DDE domain GO993_17045 PF00580 UvrD/REP helicase N-terminal domain GO993_17045 PF13361 UvrD-like helicase C-terminal domain GO993_17050 PF00266 Aminotransferase class-V GO993_17055 PF02657 Fe-S metabolism associated domain GO993_17060 PF00899 ThiF family GO993_17090 PF12724 Flavodoxin domain GO993_17095 PF02386 Cation transport protein GO993_17100 PF01205 Uncharacterized protein family UPF0029 GO993_17100 PF09186 Domain of unknown function (DUF1949) GO993_17105 PF00557 Metallopeptidase family M24 GO993_17110 PF13193 AMP-binding enzyme C-terminal domain GO993_17110 PF00501 AMP-binding enzyme GO993_17120 PF00108 Thiolase, N-terminal domain GO993_17120 PF02803 Thiolase, C-terminal domain GO993_17125 PF00072 Response regulator receiver domain GO993_17125 PF00486 Transcriptional regulatory protein, C terminal GO993_17130 PF00512 His Kinase A (phospho-acceptor) domain GO993_17130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_17130 PF00672 HAMP domain GO993_17135 PF01547 Bacterial extracellular solute-binding protein GO993_17145 PF01206 Sulfurtransferase TusA GO993_17150 PF01042 Endoribonuclease L-PSP GO993_17155 PF00691 OmpA family GO993_17155 PF13488 Glycine zipper GO993_17160 PF03352 Methyladenine glycosylase GO993_17165 PF02091 Glycyl-tRNA synthetase alpha subunit GO993_17170 PF02092 Glycyl-tRNA synthetase beta subunit GO993_17170 PF05746 DALR anticodon binding domain GO993_17175 PF13737 Transposase DDE domain GO993_17185 PF00872 Transposase, Mutator family GO993_17190 PF01609 Transposase DDE domain GO993_17200 PF09013 YopH, N-terminal GO993_17200 PF00102 Protein-tyrosine phosphatase GO993_17215 PF13737 Transposase DDE domain GO993_17225 PF01202 Shikimate kinase GO993_17235 PF00563 EAL domain GO993_17235 PF00990 Diguanylate cyclase, GGDEF domain GO993_17235 PF13426 PAS domain GO993_17245 PF05932 Tir chaperone protein (CesT) family GO993_17250 PF03222 Tryptophan/tyrosine permease family GO993_17255 PF12801 4Fe-4S binding domain GO993_17265 PF18113 Rubredoxin binding C-terminal domain GO993_17265 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_17270 PF00301 Rubredoxin GO993_17270 PF00258 Flavodoxin GO993_17270 PF00753 Metallo-beta-lactamase superfamily GO993_17275 PF01590 GAF domain GO993_17275 PF00158 Sigma-54 interaction domain GO993_17280 PF00392 Bacterial regulatory proteins, gntR family GO993_17280 PF07702 UTRA domain GO993_17285 PF01609 Transposase DDE domain GO993_17285 PF13808 DDE_Tnp_1-associated GO993_17290 PF02378 Phosphotransferase system, EIIC GO993_17290 PF00367 phosphotransferase system, EIIB GO993_17300 PF13737 Transposase DDE domain GO993_17310 PF00356 Bacterial regulatory proteins, lacI family GO993_17315 PF13458 Periplasmic binding protein GO993_17320 PF02653 Branched-chain amino acid transport system / permease component GO993_17325 PF11862 Domain of unknown function (DUF3382) GO993_17325 PF02653 Branched-chain amino acid transport system / permease component GO993_17330 PF00005 ABC transporter GO993_17330 PF12399 Branched-chain amino acid ATP-binding cassette transporter GO993_17345 PF01810 LysE type translocator GO993_17350 PF00581 Rhodanese-like domain GO993_17360 PF12262 Bacterial virulence factor lipase N-terminal GO993_17365 PF04380 Membrane fusogenic activity GO993_17370 PF00175 Oxidoreductase NAD-binding domain GO993_17375 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GO993_17385 PF07497 Rho termination factor, RNA-binding domain GO993_17385 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO993_17385 PF07498 Rho termination factor, N-terminal domain GO993_17390 PF00085 Thioredoxin GO993_17395 PF00271 Helicase conserved C-terminal domain GO993_17395 PF00270 DEAD/DEAH box helicase GO993_17400 PF02541 Ppx/GppA phosphatase family GO993_17410 PF04445 Putative SAM-dependent methyltransferase GO993_17415 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_17420 PF03707 Bacterial signalling protein N terminal repeat GO993_17420 PF00563 EAL domain GO993_17420 PF00990 Diguanylate cyclase, GGDEF domain GO993_17425 PF01432 Peptidase family M3 GO993_17430 PF00490 Delta-aminolevulinic acid dehydratase GO993_17435 PF01026 TatD related DNase GO993_17440 PF00902 Sec-independent protein translocase protein (TatC) GO993_17445 PF02416 mttA/Hcf106 family GO993_17450 PF02416 mttA/Hcf106 family GO993_17460 PF02036 SCP-2 sterol transfer family GO993_17465 PF01209 ubiE/COQ5 methyltransferase family GO993_17470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GO993_17475 PF07969 Amidohydrolase family GO993_17515 PF03544 Gram-negative bacterial TonB protein C-terminal GO993_17520 PF02472 Biopolymer transport protein ExbD/TolR GO993_17525 PF01618 MotA/TolQ/ExbB proton channel family GO993_17530 PF01618 MotA/TolQ/ExbB proton channel family GO993_17540 PF00196 Bacterial regulatory proteins, luxR family GO993_17540 PF03472 Autoinducer binding domain GO993_17545 PF01380 SIS domain GO993_17550 PF00455 DeoR C terminal sensor domain GO993_17550 PF08220 DeoR-like helix-turn-helix domain GO993_17555 PF00486 Transcriptional regulatory protein, C terminal GO993_17555 PF00072 Response regulator receiver domain GO993_17560 PF00512 His Kinase A (phospho-acceptor) domain GO993_17560 PF00672 HAMP domain GO993_17560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_17565 PF13737 Transposase DDE domain GO993_17570 PF00905 Penicillin binding protein transpeptidase domain GO993_17575 PF06123 Inner membrane protein CreD GO993_17580 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_17580 PF12804 MobA-like NTP transferase domain GO993_17580 PF14602 Hexapeptide repeat of succinyl-transferase GO993_17585 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GO993_17585 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GO993_17590 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO993_17590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO993_17595 PF00231 ATP synthase GO993_17600 PF00306 ATP synthase alpha/beta chain, C terminal domain GO993_17600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO993_17600 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO993_17605 PF00213 ATP synthase delta (OSCP) subunit GO993_17610 PF00430 ATP synthase B/B' CF(0) GO993_17615 PF00137 ATP synthase subunit C GO993_17620 PF00119 ATP synthase A chain GO993_17625 PF03899 ATP synthase I chain GO993_17630 PF02195 ParB-like nuclease domain GO993_17630 PF17762 HTH domain found in ParB protein GO993_17635 PF13614 AAA domain GO993_17640 PF02527 rRNA small subunit methyltransferase G GO993_17645 PF13932 GidA associated domain GO993_17645 PF01134 Glucose inhibited division protein A GO993_17650 PF00258 Flavodoxin GO993_17655 PF00593 TonB dependent receptor GO993_17655 PF07715 TonB-dependent Receptor Plug Domain GO993_17660 PF00005 ABC transporter GO993_17665 PF00005 ABC transporter GO993_17670 PF01497 Periplasmic binding protein GO993_17675 PF01032 FecCD transport family GO993_17690 PF00005 ABC transporter GO993_17695 PF01032 FecCD transport family GO993_17700 PF01032 FecCD transport family GO993_17705 PF00005 ABC transporter GO993_17710 PF08021 Siderophore-interacting FAD-binding domain GO993_17710 PF04954 Siderophore-interacting protein GO993_17710 PF00005 ABC transporter GO993_17710 PF00664 ABC transporter transmembrane region GO993_17720 PF00975 Thioesterase domain GO993_17720 PF00550 Phosphopantetheine attachment site GO993_17720 PF00668 Condensation domain GO993_17720 PF13193 AMP-binding enzyme C-terminal domain GO993_17720 PF00501 AMP-binding enzyme GO993_17725 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) GO993_17740 PF00282 Pyridoxal-dependent decarboxylase conserved domain GO993_17745 PF01926 50S ribosome-binding GTPase GO993_17745 PF12631 MnmE helical domain GO993_17745 PF10396 GTP-binding protein TrmE N-terminus GO993_17750 PF14849 YidC periplasmic domain GO993_17750 PF02096 60Kd inner membrane protein GO993_17755 PF01809 Putative membrane protein insertion efficiency factor GO993_17760 PF00825 Ribonuclease P GO993_17765 PF00468 Ribosomal protein L34 GO993_17775 PF00528 Binding-protein-dependent transport system inner membrane component GO993_17780 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_17785 PF00308 Bacterial dnaA protein GO993_17785 PF08299 Bacterial dnaA protein helix-turn-helix GO993_17785 PF11638 DnaA N-terminal domain GO993_17790 PF02768 DNA polymerase III beta subunit, C-terminal domain GO993_17790 PF02767 DNA polymerase III beta subunit, central domain GO993_17790 PF00712 DNA polymerase III beta subunit, N-terminal domain GO993_17800 PF00986 DNA gyrase B subunit, carboxyl terminus GO993_17800 PF00204 DNA gyrase B GO993_17800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_17800 PF01751 Toprim domain GO993_17800 PF18053 DNA gyrase B subunit insert domain GO993_17815 PF13280 WYL domain GO993_17815 PF08279 HTH domain GO993_17820 PF00011 Hsp20/alpha crystallin family GO993_17825 PF00011 Hsp20/alpha crystallin family GO993_17840 PF00155 Aminotransferase class I and II GO993_17855 PF07690 Major Facilitator Superfamily GO993_17865 PF00486 Transcriptional regulatory protein, C terminal GO993_17865 PF00072 Response regulator receiver domain GO993_17870 PF13492 GAF domain GO993_17870 PF13493 Domain of unknown function (DUF4118) GO993_17870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_17870 PF00512 His Kinase A (phospho-acceptor) domain GO993_17870 PF02702 Osmosensitive K+ channel His kinase sensor domain GO993_17875 PF02669 K+-transporting ATPase, c chain GO993_17895 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_17895 PF00512 His Kinase A (phospho-acceptor) domain GO993_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_17900 PF00873 AcrB/AcrD/AcrF family GO993_17905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_17910 PF00440 Bacterial regulatory proteins, tetR family GO993_17955 PF04607 Region found in RelA / SpoT proteins GO993_17955 PF13291 ACT domain GO993_17955 PF02824 TGS domain GO993_17960 PF01192 RNA polymerase Rpb6 GO993_17965 PF00625 Guanylate kinase GO993_17975 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO993_18010 PF03466 LysR substrate binding domain GO993_18010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_18015 PF00579 tRNA synthetases class I (W and Y) GO993_18020 PF00582 Universal stress protein family GO993_18025 PF12241 Trans-2-enoyl-CoA reductase catalytic region GO993_18025 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase GO993_18025 PF07055 Enoyl reductase FAD binding domain GO993_18030 PF00990 Diguanylate cyclase, GGDEF domain GO993_18030 PF08448 PAS fold GO993_18040 PF00210 Ferritin-like domain GO993_18050 PF01810 LysE type translocator GO993_18065 PF13737 Transposase DDE domain GO993_18090 PF01609 Transposase DDE domain GO993_18090 PF13808 DDE_Tnp_1-associated GO993_18095 PF00512 His Kinase A (phospho-acceptor) domain GO993_18095 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_18095 PF00989 PAS fold GO993_18095 PF01627 Hpt domain GO993_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_18095 PF00072 Response regulator receiver domain GO993_18105 PF07694 5TMR of 5TMR-LYT GO993_18105 PF06580 Histidine kinase GO993_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_18110 PF04397 LytTr DNA-binding domain GO993_18110 PF00072 Response regulator receiver domain GO993_18115 PF07690 Major Facilitator Superfamily GO993_18120 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GO993_18120 PF02222 ATP-grasp domain GO993_18125 PF00731 AIR carboxylase GO993_18140 PF03466 LysR substrate binding domain GO993_18140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_18145 PF07715 TonB-dependent Receptor Plug Domain GO993_18145 PF00593 TonB dependent receptor GO993_18150 PF01177 Asp/Glu/Hydantoin racemase GO993_18180 PF00583 Acetyltransferase (GNAT) family GO993_18180 PF13607 Succinyl-CoA ligase like flavodoxin domain GO993_18180 PF13380 CoA binding domain GO993_18195 PF03466 LysR substrate binding domain GO993_18195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_18200 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GO993_18200 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GO993_18205 PF00342 Phosphoglucose isomerase GO993_18215 PF00924 Mechanosensitive ion channel GO993_18215 PF05552 Conserved TM helix GO993_18220 PF00440 Bacterial regulatory proteins, tetR family GO993_18225 PF00692 dUTPase GO993_18235 PF04002 RadC-like JAB domain GO993_18240 PF00830 Ribosomal L28 family GO993_18245 PF00471 Ribosomal protein L33 GO993_18255 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GO993_18255 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GO993_18255 PF06827 Zinc finger found in FPG and IleRS GO993_18260 PF04393 Protein of unknown function (DUF535) GO993_18265 PF01467 Cytidylyltransferase-like GO993_18270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO993_18275 PF00535 Glycosyl transferase family 2 GO993_18280 PF01075 Glycosyltransferase family 9 (heptosyltransferase) GO993_18290 PF03611 PTS system sugar-specific permease component GO993_18300 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO993_18305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO993_18305 PF00356 Bacterial regulatory proteins, lacI family GO993_18330 PF03748 Flagellar basal body-associated protein FliL GO993_18335 PF04345 Chorismate lyase GO993_18345 PF01553 Acyltransferase GO993_18350 PF00717 Peptidase S24-like GO993_18350 PF01726 LexA DNA binding domain GO993_18360 PF02630 SCO1/SenC GO993_18365 PF01554 MatE GO993_18370 PF00588 SpoU rRNA Methylase family GO993_18375 PF00512 His Kinase A (phospho-acceptor) domain GO993_18375 PF16527 Two-component sensor protein CpxA, periplasmic domain GO993_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_18375 PF00672 HAMP domain GO993_18380 PF00072 Response regulator receiver domain GO993_18380 PF00486 Transcriptional regulatory protein, C terminal GO993_18385 PF01545 Cation efflux family GO993_18385 PF16916 Dimerisation domain of Zinc Transporter GO993_18390 PF06426 Serine acetyltransferase, N-terminal GO993_18390 PF00132 Bacterial transferase hexapeptide (six repeats) GO993_18400 PF06005 Cell division protein ZapB GO993_18410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GO993_18410 PF01612 3'-5' exonuclease GO993_18410 PF01367 5'-3' exonuclease, C-terminal SAM fold GO993_18410 PF00476 DNA polymerase family A GO993_18465 PF13737 Transposase DDE domain GO993_18490 PF00756 Putative esterase GO993_18495 PF00107 Zinc-binding dehydrogenase GO993_18495 PF08240 Alcohol dehydrogenase GroES-like domain GO993_18500 PF03466 LysR substrate binding domain GO993_18500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_18525 PF00580 UvrD/REP helicase N-terminal domain GO993_18525 PF13361 UvrD-like helicase C-terminal domain GO993_18535 PF13737 Transposase DDE domain GO993_18565 PF01810 LysE type translocator GO993_18570 PF04143 Sulphur transport GO993_18575 PF13808 DDE_Tnp_1-associated GO993_18575 PF01609 Transposase DDE domain GO993_18585 PF00202 Aminotransferase class-III GO993_18590 PF00171 Aldehyde dehydrogenase family GO993_18610 PF02082 Transcriptional regulator GO993_18625 PF02646 RmuC family GO993_18635 PF02254 TrkA-N domain GO993_18635 PF02080 TrkA-C domain GO993_18640 PF01029 NusB family GO993_18640 PF01189 16S rRNA methyltransferase RsmB/F GO993_18645 PF00551 Formyl transferase GO993_18645 PF02911 Formyl transferase, C-terminal domain GO993_18650 PF01327 Polypeptide deformylase GO993_18655 PF01476 LysM domain GO993_18670 PF13737 Transposase DDE domain GO993_18680 PF04361 Protein of unknown function (DUF494) GO993_18685 PF01396 Topoisomerase DNA binding C4 zinc finger GO993_18690 PF00731 AIR carboxylase GO993_18695 PF01300 Telomere recombination GO993_18700 PF01218 Coproporphyrinogen III oxidase GO993_18705 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GO993_18705 PF01488 Shikimate / quinate 5-dehydrogenase GO993_18705 PF08501 Shikimate dehydrogenase substrate binding domain GO993_18710 PF07369 Protein of unknown function (DUF1488) GO993_18715 PF13737 Transposase DDE domain GO993_18730 PF00034 Cytochrome c GO993_18735 PF04220 Der GTPase activator (YihI) GO993_18740 PF10675 Protein of unknown function (DUF2489) GO993_18745 PF06969 HemN C-terminal domain GO993_18745 PF04055 Radical SAM superfamily GO993_18750 PF00962 Adenosine/AMP deaminase GO993_18755 PF02954 Bacterial regulatory protein, Fis family GO993_18755 PF00158 Sigma-54 interaction domain GO993_18755 PF00072 Response regulator receiver domain GO993_18760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_18760 PF00512 His Kinase A (phospho-acceptor) domain GO993_18760 PF00989 PAS fold GO993_18770 PF03951 Glutamine synthetase, beta-Grasp domain GO993_18770 PF00120 Glutamine synthetase, catalytic domain GO993_18780 PF03631 Virulence factor BrkB GO993_18785 PF02580 D-Tyr-tRNA(Tyr) deacylase GO993_18810 PF13091 PLD-like domain GO993_18815 PF02447 GntP family permease GO993_18820 PF01202 Shikimate kinase GO993_18830 PF01081 KDPG and KHG aldolase GO993_18835 PF00356 Bacterial regulatory proteins, lacI family GO993_18835 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GO993_18845 PF01551 Peptidase family M23 GO993_18850 PF01676 Metalloenzyme superfamily GO993_18850 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GO993_18855 PF00581 Rhodanese-like domain GO993_18860 PF02556 Preprotein translocase subunit SecB GO993_18865 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GO993_18865 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GO993_18870 PF01106 NifU-like domain GO993_18870 PF01521 Iron-sulphur cluster biosynthesis GO993_18875 PF00156 Phosphoribosyl transferase domain GO993_18880 PF00561 alpha/beta hydrolase fold GO993_18900 PF00575 S1 RNA binding domain GO993_18900 PF09371 Tex-like protein N-terminal domain GO993_18900 PF16921 Tex protein YqgF-like domain GO993_18900 PF17674 HHH domain GO993_18905 PF03449 Transcription elongation factor, N-terminal GO993_18905 PF01272 Transcription elongation factor, GreA/GreB, C-term GO993_18910 PF00486 Transcriptional regulatory protein, C terminal GO993_18910 PF00072 Response regulator receiver domain GO993_18915 PF00672 HAMP domain GO993_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_18915 PF00512 His Kinase A (phospho-acceptor) domain GO993_18925 PF00338 Ribosomal protein S10p/S20e GO993_18930 PF00297 Ribosomal protein L3 GO993_18935 PF00573 Ribosomal protein L4/L1 family GO993_18940 PF00276 Ribosomal protein L23 GO993_18945 PF00181 Ribosomal Proteins L2, RNA binding domain GO993_18945 PF03947 Ribosomal Proteins L2, C-terminal domain GO993_18950 PF00203 Ribosomal protein S19 GO993_18955 PF00237 Ribosomal protein L22p/L17e GO993_18960 PF00189 Ribosomal protein S3, C-terminal domain GO993_18960 PF07650 KH domain GO993_18965 PF00252 Ribosomal protein L16p/L10e GO993_18970 PF00831 Ribosomal L29 protein GO993_18975 PF00366 Ribosomal protein S17 GO993_18980 PF00238 Ribosomal protein L14p/L23e GO993_18985 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GO993_18990 PF00673 ribosomal L5P family C-terminus GO993_18990 PF00281 Ribosomal protein L5 GO993_18995 PF00253 Ribosomal protein S14p/S29e GO993_19000 PF00410 Ribosomal protein S8 GO993_19005 PF00347 Ribosomal protein L6 GO993_19010 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GO993_19015 PF03719 Ribosomal protein S5, C-terminal domain GO993_19015 PF00333 Ribosomal protein S5, N-terminal domain GO993_19020 PF00327 Ribosomal protein L30p/L7e GO993_19025 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GO993_19030 PF00344 SecY translocase GO993_19035 PF00444 Ribosomal protein L36 GO993_19040 PF00416 Ribosomal protein S13/S18 GO993_19045 PF00411 Ribosomal protein S11 GO993_19050 PF01479 S4 domain GO993_19050 PF00163 Ribosomal protein S4/S9 N-terminal domain GO993_19055 PF01000 RNA polymerase Rpb3/RpoA insert domain GO993_19055 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GO993_19055 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GO993_19060 PF01196 Ribosomal protein L17 GO993_19105 PF00860 Permease family GO993_19110 PF02733 Dak1 domain GO993_19115 PF02734 DAK2 domain GO993_19125 PF00465 Iron-containing alcohol dehydrogenase GO993_19130 PF00989 PAS fold GO993_19130 PF02954 Bacterial regulatory protein, Fis family GO993_19130 PF00158 Sigma-54 interaction domain GO993_19135 PF01594 AI-2E family transporter GO993_19145 PF01609 Transposase DDE domain GO993_19145 PF13808 DDE_Tnp_1-associated GO993_19155 PF00696 Amino acid kinase family GO993_19160 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GO993_19160 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GO993_19165 PF03606 C4-dicarboxylate anaerobic carrier GO993_19170 PF01316 Arginine repressor, DNA binding domain GO993_19170 PF02863 Arginine repressor, C-terminal domain GO993_19175 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain GO993_19175 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain GO993_19180 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GO993_19180 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GO993_19195 PF02666 Phosphatidylserine decarboxylase GO993_19200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_19200 PF02743 Cache domain GO993_19200 PF00672 HAMP domain GO993_19205 PF08212 Lipocalin-like domain GO993_19215 PF00465 Iron-containing alcohol dehydrogenase GO993_19225 PF02233 NAD(P) transhydrogenase beta subunit GO993_19235 PF13309 HTH domain GO993_19235 PF08348 YheO-like PAS domain GO993_19240 PF03313 Serine dehydratase alpha chain GO993_19245 PF00375 Sodium:dicarboxylate symporter family GO993_19255 PF13525 Outer membrane lipoprotein GO993_19260 PF00849 RNA pseudouridylate synthase GO993_19260 PF01479 S4 domain GO993_19270 PF10431 C-terminal, D2-small domain, of ClpB protein GO993_19270 PF00004 ATPase family associated with various cellular activities (AAA) GO993_19270 PF07724 AAA domain (Cdc48 subfamily) GO993_19270 PF17871 AAA lid domain GO993_19270 PF02861 Clp amino terminal domain, pathogenicity island component GO993_19275 PF03590 Aspartate-ammonia ligase GO993_19280 PF01037 Lrp/AsnC ligand binding domain GO993_19290 PF10063 Uncharacterized integral membrane protein (DUF2301) GO993_19295 PF00571 CBS domain GO993_19295 PF01368 DHH family GO993_19295 PF02272 DHHA1 domain GO993_19295 PF01743 Poly A polymerase head domain GO993_19325 PF00072 Response regulator receiver domain GO993_19325 PF00158 Sigma-54 interaction domain GO993_19330 PF06496 Protein of unknown function (DUF1097) GO993_19355 PF00486 Transcriptional regulatory protein, C terminal GO993_19355 PF00072 Response regulator receiver domain GO993_19360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_19360 PF08918 PhoQ Sensor GO993_19370 PF00384 Molybdopterin oxidoreductase GO993_19370 PF18364 Molybdopterin oxidoreductase N-terminal domain GO993_19370 PF01568 Molydopterin dinucleotide binding domain GO993_19375 PF03264 NapC/NirT cytochrome c family, N-terminal region GO993_19380 PF01131 DNA topoisomerase GO993_19380 PF01751 Toprim domain GO993_19385 PF02386 Cation transport protein GO993_19390 PF02080 TrkA-C domain GO993_19390 PF02254 TrkA-N domain GO993_19395 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GO993_19395 PF01565 FAD binding domain GO993_19400 PF03099 Biotin/lipoate A/B protein ligase family GO993_19400 PF08279 HTH domain GO993_19400 PF02237 Biotin protein ligase C terminal domain GO993_19405 PF00485 Phosphoribulokinase / Uridine kinase family GO993_19420 PF00009 Elongation factor Tu GTP binding domain GO993_19420 PF03144 Elongation factor Tu domain 2 GO993_19420 PF03143 Elongation factor Tu C-terminal domain GO993_19430 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GO993_19435 PF00467 KOW motif GO993_19435 PF02357 Transcription termination factor nusG GO993_19440 PF00298 Ribosomal protein L11, RNA binding domain GO993_19440 PF03946 Ribosomal protein L11, N-terminal domain GO993_19445 PF00687 Ribosomal protein L1p/L10e family GO993_19450 PF00466 Ribosomal protein L10 GO993_19455 PF16320 Ribosomal protein L7/L12 dimerisation domain GO993_19455 PF00542 Ribosomal protein L7/L12 C-terminal domain GO993_19460 PF00562 RNA polymerase Rpb2, domain 6 GO993_19460 PF10385 RNA polymerase beta subunit external 1 domain GO993_19460 PF04565 RNA polymerase Rpb2, domain 3 GO993_19460 PF04561 RNA polymerase Rpb2, domain 2 GO993_19460 PF04563 RNA polymerase beta subunit GO993_19460 PF04560 RNA polymerase Rpb2, domain 7 GO993_19465 PF04983 RNA polymerase Rpb1, domain 3 GO993_19465 PF04997 RNA polymerase Rpb1, domain 1 GO993_19465 PF00623 RNA polymerase Rpb1, domain 2 GO993_19465 PF05000 RNA polymerase Rpb1, domain 4 GO993_19465 PF04998 RNA polymerase Rpb1, domain 5 GO993_19470 PF13309 HTH domain GO993_19470 PF08348 YheO-like PAS domain GO993_19475 PF01042 Endoribonuclease L-PSP GO993_19480 PF02635 DsrE/DsrF-like family GO993_19485 PF02635 DsrE/DsrF-like family GO993_19490 PF04077 DsrH like protein GO993_19495 PF00164 Ribosomal protein S12/S23 GO993_19500 PF00177 Ribosomal protein S7p/S5e GO993_19505 PF00679 Elongation factor G C-terminus GO993_19505 PF03144 Elongation factor Tu domain 2 GO993_19505 PF00009 Elongation factor Tu GTP binding domain GO993_19505 PF14492 Elongation Factor G, domain II GO993_19505 PF03764 Elongation factor G, domain IV GO993_19510 PF00009 Elongation factor Tu GTP binding domain GO993_19510 PF03144 Elongation factor Tu domain 2 GO993_19510 PF03143 Elongation factor Tu C-terminal domain GO993_19560 PF13737 Transposase DDE domain GO993_19580 PF03922 OmpW family GO993_19600 PF02219 Methylenetetrahydrofolate reductase GO993_19615 PF07883 Cupin domain GO993_19615 PF01381 Helix-turn-helix GO993_19645 PF04363 Protein of unknown function (DUF496) GO993_19655 PF04751 Protein of unknown function (DUF615) GO993_19660 PF01523 Putative modulator of DNA gyrase GO993_19665 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GO993_19670 PF01722 BolA-like protein GO993_19680 PF05494 MlaC protein GO993_19685 PF02470 MlaD protein GO993_19690 PF02405 Permease MlaE GO993_19695 PF00005 ABC transporter GO993_19700 PF01380 SIS domain GO993_19700 PF00571 CBS domain GO993_19710 PF06835 Lipopolysaccharide-assembly, LptC-related GO993_19715 PF03968 OstA-like protein GO993_19720 PF12399 Branched-chain amino acid ATP-binding cassette transporter GO993_19720 PF00005 ABC transporter GO993_19730 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GO993_19735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GO993_19740 PF03668 P-loop ATPase protein family GO993_19745 PF00381 PTS HPr component phosphorylation site GO993_19755 PF07071 KDGP aldolase GO993_19765 PF03841 L-seryl-tRNA selenium transferase GO993_19770 PF01979 Amidohydrolase family GO993_19810 PF00595 PDZ domain GO993_19810 PF13180 PDZ domain GO993_19820 PF03969 AFG1-like ATPase GO993_19825 PF00572 Ribosomal protein L13 GO993_19830 PF00380 Ribosomal protein S9/S16 GO993_19835 PF00355 Rieske [2Fe-2S] domain GO993_19835 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal GO993_19840 PF00033 Cytochrome b/b6/petB GO993_19840 PF00032 Cytochrome b(C-terminal)/b6/petD GO993_19845 PF02167 Cytochrome C1 family GO993_19850 PF02798 Glutathione S-transferase, N-terminal domain GO993_19850 PF00043 Glutathione S-transferase, C-terminal domain GO993_19855 PF04386 Stringent starvation protein B GO993_19860 PF04972 BON domain GO993_19875 PF04348 LppC putative lipoprotein GO993_19880 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GO993_19895 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GO993_19900 PF00813 FliP family GO993_19905 PF01313 Bacterial export proteins, family 3 GO993_19910 PF01311 Bacterial export proteins, family 1 GO993_19915 PF01312 FlhB HrpN YscU SpaS Family GO993_19920 PF00771 FHIPEP family GO993_19925 PF00158 Sigma-54 interaction domain GO993_19925 PF02954 Bacterial regulatory protein, Fis family GO993_19925 PF00072 Response regulator receiver domain GO993_19930 PF02049 Flagellar hook-basal body complex protein FliE GO993_19935 PF08345 Flagellar M-ring protein C-terminal GO993_19935 PF01514 Secretory protein of YscJ/FliF family GO993_19940 PF14842 FliG N-terminal domain GO993_19940 PF14841 FliG middle domain GO993_19940 PF01706 FliG C-terminal domain GO993_19950 PF13737 Transposase DDE domain GO993_19955 PF18269 T3SS EscN ATPase C-terminal domain GO993_19955 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO993_19970 PF04316 Anti-sigma-28 factor, FlgM GO993_19980 PF00460 Flagella basal body rod protein GO993_19985 PF00460 Flagella basal body rod protein GO993_19985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO993_19990 PF03963 Flagellar hook capping protein - N-terminal region GO993_19995 PF07559 Flagellar basal body protein FlaE GO993_19995 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO993_19995 PF00460 Flagella basal body rod protein GO993_20005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO993_20005 PF00460 Flagella basal body rod protein GO993_20010 PF02107 Flagellar L-ring protein GO993_20015 PF02119 Flagellar P-ring protein GO993_20025 PF00460 Flagella basal body rod protein GO993_20025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GO993_20050 PF13737 Transposase DDE domain GO993_20055 PF00700 Bacterial flagellin C-terminal helical region GO993_20055 PF00669 Bacterial flagellin N-terminal helical region GO993_20085 PF04542 Sigma-70 region 2 GO993_20085 PF04545 Sigma-70, region 4 GO993_20090 PF01618 MotA/TolQ/ExbB proton channel family GO993_20115 PF01795 MraW methylase family GO993_20120 PF04999 Cell division protein FtsL GO993_20130 PF01225 Mur ligase family, catalytic domain GO993_20130 PF08245 Mur ligase middle domain GO993_20130 PF02875 Mur ligase family, glutamate ligase domain GO993_20135 PF08245 Mur ligase middle domain GO993_20135 PF01225 Mur ligase family, catalytic domain GO993_20135 PF02875 Mur ligase family, glutamate ligase domain GO993_20145 PF02875 Mur ligase family, glutamate ligase domain GO993_20145 PF08245 Mur ligase middle domain GO993_20150 PF01098 Cell cycle protein GO993_20155 PF03033 Glycosyltransferase family 28 N-terminal domain GO993_20155 PF04101 Glycosyltransferase family 28 C-terminal domain GO993_20160 PF01225 Mur ligase family, catalytic domain GO993_20160 PF02875 Mur ligase family, glutamate ligase domain GO993_20160 PF08245 Mur ligase middle domain GO993_20165 PF08478 POTRA domain, FtsQ-type GO993_20165 PF03799 Cell division protein FtsQ GO993_20170 PF02491 SHS2 domain inserted in FTSA GO993_20175 PF00091 Tubulin/FtsZ family, GTPase domain GO993_20175 PF12327 FtsZ family, C-terminal domain GO993_20180 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase GO993_20190 PF07516 SecA Wing and Scaffold domain GO993_20190 PF01043 SecA preprotein cross-linking domain GO993_20190 PF07517 SecA DEAD-like domain GO993_20190 PF02810 SEC-C motif GO993_20200 PF00293 NUDIX domain GO993_20205 PF03884 DNA gyrase inhibitor YacG GO993_20210 PF07072 Cell division protein GO993_20215 PF01121 Dephospho-CoA kinase GO993_20220 PF01478 Type IV leader peptidase family GO993_20220 PF06750 Bacterial Peptidase A24 N-terminal domain GO993_20235 PF07963 Prokaryotic N-terminal methylation motif GO993_20240 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GO993_20240 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GO993_20250 PF01510 N-acetylmuramoyl-L-alanine amidase GO993_20260 PF00456 Transketolase, thiamine diphosphate binding domain GO993_20260 PF17831 Pyruvate dehydrogenase E1 component middle domain GO993_20265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GO993_20265 PF02817 e3 binding domain GO993_20265 PF00364 Biotin-requiring enzyme GO993_20270 PF07992 Pyridine nucleotide-disulphide oxidoreductase GO993_20270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GO993_20275 PF13426 PAS domain GO993_20275 PF05231 MASE1 GO993_20275 PF00990 Diguanylate cyclase, GGDEF domain GO993_20275 PF00563 EAL domain GO993_20275 PF08448 PAS fold GO993_20275 PF08447 PAS fold GO993_20285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_20285 PF12729 Four helix bundle sensory module for signal transduction GO993_20285 PF00672 HAMP domain GO993_20290 PF00672 HAMP domain GO993_20290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_20290 PF12729 Four helix bundle sensory module for signal transduction GO993_20310 PF01609 Transposase DDE domain GO993_20310 PF13808 DDE_Tnp_1-associated GO993_20325 PF13737 Transposase DDE domain GO993_20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_20340 PF03466 LysR substrate binding domain GO993_20345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_20345 PF03466 LysR substrate binding domain GO993_20350 PF01810 LysE type translocator GO993_20360 PF02492 CobW/HypB/UreG, nucleotide-binding domain GO993_20360 PF07683 Cobalamin synthesis protein cobW C-terminal domain GO993_20375 PF13737 Transposase DDE domain GO993_20385 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GO993_20390 PF02152 Dihydroneopterin aldolase GO993_20395 PF02660 Glycerol-3-phosphate acyltransferase GO993_20455 PF13737 Transposase DDE domain GO993_20480 PF13737 Transposase DDE domain GO993_20485 PF00999 Sodium/hydrogen exchanger family GO993_20495 PF18030 RimK PreATP-grasp domain GO993_20495 PF08443 RimK-like ATP-grasp domain GO993_20500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_20505 PF00072 Response regulator receiver domain GO993_20505 PF00486 Transcriptional regulatory protein, C terminal GO993_20525 PF13737 Transposase DDE domain GO993_20545 PF08668 HDOD domain GO993_20555 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) GO993_20560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_20560 PF08447 PAS fold GO993_20560 PF13426 PAS domain GO993_20565 PF01740 STAS domain GO993_20565 PF08678 Rsbr N terminal GO993_20575 PF01627 Hpt domain GO993_20575 PF00072 Response regulator receiver domain GO993_20575 PF00512 His Kinase A (phospho-acceptor) domain GO993_20575 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO993_20575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_20575 PF00672 HAMP domain GO993_20580 PF00072 Response regulator receiver domain GO993_20595 PF01914 MarC family integral membrane protein GO993_20605 PF01523 Putative modulator of DNA gyrase GO993_20610 PF00795 Carbon-nitrogen hydrolase GO993_20620 PF13116 Protein of unknown function GO993_20620 PF13502 AsmA-like C-terminal region GO993_20625 PF10150 Ribonuclease E/G family GO993_20625 PF00575 S1 RNA binding domain GO993_20630 PF02545 Maf-like protein GO993_20635 PF04093 rod shape-determining protein MreD GO993_20640 PF04085 rod shape-determining protein MreC GO993_20700 PF00990 Diguanylate cyclase, GGDEF domain GO993_20700 PF00563 EAL domain GO993_20700 PF17157 Gammaproteobacterial periplasmic sensor domain GO993_20715 PF00221 Aromatic amino acid lyase GO993_20720 PF01175 Urocanase Rossmann-like domain GO993_20720 PF17392 Urocanase C-terminal domain GO993_20720 PF17391 Urocanase N-terminal domain GO993_20725 PF00491 Arginase family GO993_20730 PF01979 Amidohydrolase family GO993_20740 PF00484 Carbonic anhydrase GO993_20745 PF00140 Sigma-70 factor, region 1.2 GO993_20745 PF04545 Sigma-70, region 4 GO993_20745 PF04542 Sigma-70 region 2 GO993_20750 PF18075 FtsX extracellular domain GO993_20760 PF02881 SRP54-type protein, helical bundle domain GO993_20760 PF00448 SRP54-type protein, GTPase domain GO993_20785 PF00440 Bacterial regulatory proteins, tetR family GO993_20795 PF13091 PLD-like domain GO993_20805 PF00497 Bacterial extracellular solute-binding proteins, family 3 GO993_20805 PF01464 Transglycosylase SLT domain GO993_20815 PF02416 mttA/Hcf106 family GO993_20820 PF03466 LysR substrate binding domain GO993_20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_20825 PF01914 MarC family integral membrane protein GO993_20830 PF10678 Protein of unknown function (DUF2492) GO993_20835 PF00375 Sodium:dicarboxylate symporter family GO993_20845 PF03466 LysR substrate binding domain GO993_20845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_20850 PF13533 Biotin-lipoyl like GO993_20880 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain GO993_20880 PF00326 Prolyl oligopeptidase family GO993_20895 PF02525 Flavodoxin-like fold GO993_20900 PF00999 Sodium/hydrogen exchanger family GO993_20900 PF02254 TrkA-N domain GO993_20935 PF13737 Transposase DDE domain GO993_20950 PF00271 Helicase conserved C-terminal domain GO993_20950 PF00270 DEAD/DEAH box helicase GO993_20970 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase GO993_20990 PF00445 Ribonuclease T2 family GO993_21030 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain GO993_21030 PF00293 NUDIX domain GO993_21030 PF09297 NADH pyrophosphatase zinc ribbon domain GO993_21045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_21075 PF01609 Transposase DDE domain GO993_21075 PF13808 DDE_Tnp_1-associated GO993_21090 PF03710 Glutamate-ammonia ligase adenylyltransferase GO993_21090 PF08335 GlnD PII-uridylyltransferase GO993_21100 PF13737 Transposase DDE domain GO993_21115 PF13808 DDE_Tnp_1-associated GO993_21115 PF01609 Transposase DDE domain GO993_21120 PF00106 short chain dehydrogenase GO993_21140 PF08220 DeoR-like helix-turn-helix domain GO993_21140 PF00455 DeoR C terminal sensor domain GO993_21145 PF03710 Glutamate-ammonia ligase adenylyltransferase GO993_21145 PF08335 GlnD PII-uridylyltransferase GO993_21175 PF16884 N-terminal domain of oxidoreductase GO993_21175 PF00107 Zinc-binding dehydrogenase GO993_21180 PF02566 OsmC-like protein GO993_21185 PF01047 MarR family GO993_21200 PF01037 Lrp/AsnC ligand binding domain GO993_21210 PF07690 Major Facilitator Superfamily GO993_21230 PF00209 Sodium:neurotransmitter symporter family GO993_21240 PF00209 Sodium:neurotransmitter symporter family GO993_21265 PF00155 Aminotransferase class I and II GO993_21265 PF00392 Bacterial regulatory proteins, gntR family GO993_21280 PF01177 Asp/Glu/Hydantoin racemase GO993_21290 PF04074 YhcH/YjgK/YiaL GO993_21295 PF00871 Acetokinase family GO993_21310 PF00474 Sodium:solute symporter family GO993_21320 PF13411 MerR HTH family regulatory protein GO993_21325 PF13808 DDE_Tnp_1-associated GO993_21325 PF01609 Transposase DDE domain GO993_21340 PF13808 DDE_Tnp_1-associated GO993_21340 PF01609 Transposase DDE domain GO993_21350 PF13737 Transposase DDE domain GO993_21390 PF13737 Transposase DDE domain GO993_21400 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ GO993_21410 PF00005 ABC transporter GO993_21410 PF12848 ABC transporter GO993_21415 PF01380 SIS domain GO993_21415 PF00571 CBS domain GO993_21425 PF16200 C-terminal region of band_7 GO993_21425 PF01145 SPFH domain / Band 7 family GO993_21435 PF01507 Phosphoadenosine phosphosulfate reductase family GO993_21440 PF00009 Elongation factor Tu GTP binding domain GO993_21445 PF03600 Citrate transporter GO993_21445 PF02080 TrkA-C domain GO993_21460 PF13737 Transposase DDE domain GO993_21470 PF00872 Transposase, Mutator family GO993_21475 PF13808 DDE_Tnp_1-associated GO993_21475 PF01609 Transposase DDE domain GO993_21490 PF13737 Transposase DDE domain GO993_21505 PF13737 Transposase DDE domain GO993_21510 PF08447 PAS fold GO993_21510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GO993_21530 PF00005 ABC transporter GO993_21545 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) GO993_21560 PF00480 ROK family GO993_21570 PF00162 Phosphoglycerate kinase GO993_21575 PF01116 Fructose-bisphosphate aldolase class-II GO993_21590 PF02683 Cytochrome C biogenesis protein transmembrane region GO993_21590 PF11412 Disulphide bond corrector protein DsbC GO993_21595 PF03091 CutA1 divalent ion tolerance protein GO993_21615 PF01571 Aminomethyltransferase folate-binding domain GO993_21620 PF03937 Flavinator of succinate dehydrogenase GO993_21635 PF08281 Sigma-70, region 4 GO993_21635 PF04542 Sigma-70 region 2 GO993_21640 PF03873 Anti sigma-E protein RseA, C-terminal domain GO993_21640 PF03872 Anti sigma-E protein RseA, N-terminal domain GO993_21655 PF00009 Elongation factor Tu GTP binding domain GO993_21655 PF00679 Elongation factor G C-terminus GO993_21655 PF06421 GTP-binding protein LepA C-terminus GO993_21655 PF03144 Elongation factor Tu domain 2 GO993_21665 PF14622 Ribonuclease-III-like GO993_21665 PF00035 Double-stranded RNA binding motif GO993_21670 PF07650 KH domain GO993_21670 PF01926 50S ribosome-binding GTPase GO993_21675 PF02565 Recombination protein O C terminal GO993_21675 PF11967 Recombination protein O N terminal GO993_21680 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ GO993_21685 PF01510 N-acetylmuramoyl-L-alanine amidase GO993_21690 PF07308 Protein of unknown function (DUF1456) GO993_21695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) GO993_21695 PF00072 Response regulator receiver domain GO993_21695 PF01627 Hpt domain GO993_21695 PF00512 His Kinase A (phospho-acceptor) domain GO993_21695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GO993_21695 PF00672 HAMP domain GO993_21700 PF01938 TRAM domain GO993_21700 PF05958 tRNA (Uracil-5-)-methyltransferase GO993_21705 PF04607 Region found in RelA / SpoT proteins GO993_21705 PF02824 TGS domain GO993_21705 PF13291 ACT domain GO993_21710 PF03819 MazG nucleotide pyrophosphohydrolase domain GO993_21715 PF00117 Glutamine amidotransferase class-I GO993_21715 PF06418 CTP synthase N-terminus GO993_21720 PF00113 Enolase, C-terminal TIM barrel domain GO993_21720 PF03952 Enolase, N-terminal domain GO993_21725 PF04977 Septum formation initiator GO993_21730 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GO993_21735 PF02542 YgbB family GO993_21740 PF01142 tRNA pseudouridine synthase D (TruD) GO993_21755 PF09335 SNARE associated Golgi protein GO993_21760 PF01551 Peptidase family M23 GO993_21760 PF01476 LysM domain GO993_21765 PF00140 Sigma-70 factor, region 1.2 GO993_21765 PF04542 Sigma-70 region 2 GO993_21765 PF04545 Sigma-70, region 4 GO993_21765 PF04539 Sigma-70 region 3 GO993_21770 PF00814 Glycoprotease family GO993_21775 PF01165 Ribosomal protein S21 GO993_21780 PF09424 Yqey-like protein GO993_21785 PF08278 DNA primase DnaG DnaB-binding GO993_21785 PF01807 CHC2 zinc finger GO993_21785 PF10410 DnaB-helicase binding domain of primase GO993_21785 PF08275 DNA primase catalytic core, N-terminal domain GO993_21790 PF04546 Sigma-70, non-essential region GO993_21790 PF03979 Sigma-70 factor, region 1.1 GO993_21790 PF00140 Sigma-70 factor, region 1.2 GO993_21790 PF04542 Sigma-70 region 2 GO993_21790 PF04539 Sigma-70 region 3 GO993_21790 PF04545 Sigma-70, region 4 GO993_21800 PF01609 Transposase DDE domain GO993_21800 PF13808 DDE_Tnp_1-associated GO993_21805 PF13592 Winged helix-turn helix GO993_21805 PF13358 DDE superfamily endonuclease GO993_21835 PF02844 Phosphoribosylglycinamide synthetase, N domain GO993_21835 PF02843 Phosphoribosylglycinamide synthetase, C domain GO993_21835 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GO993_21840 PF01808 AICARFT/IMPCHase bienzyme GO993_21840 PF02142 MGS-like domain GO993_21845 PF13411 MerR HTH family regulatory protein GO993_21855 PF03889 Alternative ribosome-rescue factor A GO993_21860 PF06969 HemN C-terminal domain GO993_21860 PF04055 Radical SAM superfamily GO993_21865 PF01725 Ham1 family GO993_21890 PF13302 Acetyltransferase (GNAT) domain GO993_21905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GO993_21905 PF03466 LysR substrate binding domain GO993_21915 PF00267 Gram-negative porin GO993_21920 PF03605 Anaerobic c4-dicarboxylate membrane transporter GO993_21925 PF00206 Lyase GO993_21925 PF10415 Fumarase C C-terminus GO993_21930 PF04186 FxsA cytoplasmic membrane protein GO993_21935 PF01554 MatE GO993_21940 PF00166 Chaperonin 10 Kd subunit GO993_21945 PF00118 TCP-1/cpn60 chaperonin family GO993_21955 PF03707 Bacterial signalling protein N terminal repeat GO993_21955 PF13188 PAS domain GO993_21955 PF00563 EAL domain GO993_21955 PF00990 Diguanylate cyclase, GGDEF domain GO993_21965 PF00849 RNA pseudouridylate synthase GO993_21970 PF18339 RapA N-terminal Tudor like domain 1 GO993_21970 PF00271 Helicase conserved C-terminal domain GO993_21970 PF12137 RNA polymerase recycling family C-terminal GO993_21970 PF18337 RapA N-terminal Tudor like domain GO993_21970 PF00176 SNF2 family N-terminal domain GO993_21995 PF01810 LysE type translocator GO993_22000 PF02954 Bacterial regulatory protein, Fis family GO993_22005 PF01207 Dihydrouridine synthase (Dus) GO993_22010 PF02321 Outer membrane efflux protein GO993_22015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GO993_22045 PF00072 Response regulator receiver domain GO993_22050 PF00854 POT family GO993_22055 PF00483 Nucleotidyl transferase GO993_22065 PF00459 Inositol monophosphatase family GO993_22070 PF03795 YCII-related domain GO993_22075 PF04279 Intracellular septation protein A GO993_22080 PF00282 Pyridoxal-dependent decarboxylase conserved domain GO993_22085 PF03006 Haemolysin-III related GO993_22090 PF02080 TrkA-C domain GO993_22090 PF06826 Predicted Permease Membrane Region GO993_22115 PF13472 GDSL-like Lipase/Acylhydrolase family GO993_22135 PF12792 CSS motif domain associated with EAL GO993_22135 PF00563 EAL domain GO993_22145 PF01483 Proprotein convertase P-domain GO993_22145 PF04389 Peptidase family M28 GO993_22150 PF02390 Putative methyltransferase GO993_22155 PF04320 Protein with unknown function (DUF469) GO993_22165 PF00581 Rhodanese-like domain GO993_22170 PF06004 Bacterial protein of unknown function (DUF903) GO993_22175 PF00664 ABC transporter transmembrane region GO993_22175 PF00005 ABC transporter GO993_22185 PF00171 Aldehyde dehydrogenase family GO993_22215 PF00801 PKD domain GO993_22215 PF05547 Immune inhibitor A peptidase M6 GO993_22220 PF06877 Regulator of ribonuclease activity B GO993_22225 PF00563 EAL domain GO993_22225 PF00990 Diguanylate cyclase, GGDEF domain GO993_22225 PF03707 Bacterial signalling protein N terminal repeat GO993_22245 PF09905 DNA-binding protein VF530 GO993_22250 PF02666 Phosphatidylserine decarboxylase GO993_22255 PF03193 RsgA GTPase GO993_22260 PF00929 Exonuclease GO993_22290 PF00313 'Cold-shock' DNA-binding domain GO993_22305 PF00749 tRNA synthetases class I (E and Q), catalytic domain GO993_22340 PF00704 Glycosyl hydrolases family 18 GO993_22340 PF06483 Chitinase C GO993_22425 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GO993_22445 PF01848 Hok/gef family GO993_22465 PF13737 Transposase DDE domain GO993_22505 PF13737 Transposase DDE domain GO993_22515 PF13614 AAA domain GO993_22570 PF01313 Bacterial export proteins, family 3 GO993_22575 PF00813 FliP family GO993_22600 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GO993_22600 PF02874 ATP synthase alpha/beta family, beta-barrel domain GO993_22600 PF18269 T3SS EscN ATPase C-terminal domain GO993_22605 PF07201 HrpJ-like domain GO993_22610 PF09059 TyeA GO993_22620 PF09474 Type III secretion system YscX (type_III_YscX) GO993_22635 PF09621 Type III secretion system regulator (LcrR) GO993_22640 PF07216 LcrG protein GO993_22645 PF04792 V antigen (LcrV) protein GO993_22650 PF07720 Tetratricopeptide repeat GO993_22655 PF04888 Secretion system effector C (SseC) like family GO993_22660 PF05844 YopD protein GO993_22665 PF05932 Tir chaperone protein (CesT) family GO993_22700 PF16693 Inner membrane component of T3SS, periplasmic domain GO993_22700 PF16697 Inner membrane component of T3SS, cytoplasmic domain GO993_22710 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF GO993_22715 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) GO993_22720 PF09025 YopR, type III needle-polymerisation regulator GO993_22725 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI GO993_22730 PF01514 Secretory protein of YscJ/FliF family GO993_22740 PF02108 Flagellar assembly protein FliH GO993_22750 PF02371 Transposase IS116/IS110/IS902 family GO993_22750 PF01548 Transposase GO993_22760 PF13737 Transposase DDE domain GO993_22790 PF13614 AAA domain GO993_22800 PF00816 H-NS histone family GO993_22815 PF13737 Transposase DDE domain GO993_22830 PF13737 Transposase DDE domain GO993_22850 PF01848 Hok/gef family GO993_22860 PF13737 Transposase DDE domain