locus-tag class description E3D14_00005 PF08299 Bacterial dnaA protein helix-turn-helix E3D14_00005 PF00308 Bacterial dnaA protein E3D14_00005 PF11638 DnaA N-terminal domain E3D14_00010 PF02767 DNA polymerase III beta subunit, central domain E3D14_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain E3D14_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain E3D14_00015 PF02463 RecF/RecN/SMC N terminal domain E3D14_00020 PF18053 DNA gyrase B subunit insert domain E3D14_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00020 PF01751 Toprim domain E3D14_00020 PF00204 DNA gyrase B E3D14_00020 PF00986 DNA gyrase B subunit, carboxyl terminus E3D14_00035 PF13280 WYL domain E3D14_00035 PF08279 HTH domain E3D14_00040 PF00011 Hsp20/alpha crystallin family E3D14_00045 PF00011 Hsp20/alpha crystallin family E3D14_00060 PF00155 Aminotransferase class I and II E3D14_00085 PF00486 Transcriptional regulatory protein, C terminal E3D14_00085 PF00072 Response regulator receiver domain E3D14_00090 PF13493 Domain of unknown function (DUF4118) E3D14_00090 PF13492 GAF domain E3D14_00090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00090 PF00512 His Kinase A (phospho-acceptor) domain E3D14_00090 PF02702 Osmosensitive K+ channel His kinase sensor domain E3D14_00095 PF02669 K+-transporting ATPase, c chain E3D14_00105 PF03814 Potassium-transporting ATPase A subunit E3D14_00115 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D14_00115 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_00120 PF00512 His Kinase A (phospho-acceptor) domain E3D14_00120 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_00120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00125 PF00873 AcrB/AcrD/AcrF family E3D14_00130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_00135 PF00440 Bacterial regulatory proteins, tetR family E3D14_00170 PF12146 Serine aminopeptidase, S33 E3D14_00175 PF00588 SpoU rRNA Methylase family E3D14_00175 PF12105 SpoU, rRNA methylase, C-terminal E3D14_00180 PF13291 ACT domain E3D14_00180 PF02824 TGS domain E3D14_00180 PF04607 Region found in RelA / SpoT proteins E3D14_00185 PF01192 RNA polymerase Rpb6 E3D14_00190 PF00625 Guanylate kinase E3D14_00200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3D14_00215 PF00892 EamA-like transporter family E3D14_00235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_00235 PF03466 LysR substrate binding domain E3D14_00240 PF00579 tRNA synthetases class I (W and Y) E3D14_00245 PF00582 Universal stress protein family E3D14_00250 PF07055 Enoyl reductase FAD binding domain E3D14_00250 PF12241 Trans-2-enoyl-CoA reductase catalytic region E3D14_00250 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E3D14_00260 PF00210 Ferritin-like domain E3D14_00270 PF01810 LysE type translocator E3D14_00305 PF00665 Integrase core domain E3D14_00310 PF01695 IstB-like ATP binding protein E3D14_00320 PF16449 Fimbrillin MatB E3D14_00325 PF00196 Bacterial regulatory proteins, luxR family E3D14_00325 PF00072 Response regulator receiver domain E3D14_00330 PF00072 Response regulator receiver domain E3D14_00330 PF00512 His Kinase A (phospho-acceptor) domain E3D14_00330 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_00330 PF01627 Hpt domain E3D14_00330 PF00989 PAS fold E3D14_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00340 PF00512 His Kinase A (phospho-acceptor) domain E3D14_00340 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_00340 PF00072 Response regulator receiver domain E3D14_00340 PF00989 PAS fold E3D14_00340 PF01627 Hpt domain E3D14_00340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00350 PF07694 5TMR of 5TMR-LYT E3D14_00350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00350 PF06580 Histidine kinase E3D14_00355 PF04397 LytTr DNA-binding domain E3D14_00355 PF00072 Response regulator receiver domain E3D14_00360 PF07690 Major Facilitator Superfamily E3D14_00365 PF02222 ATP-grasp domain E3D14_00365 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain E3D14_00370 PF00731 AIR carboxylase E3D14_00385 PF03466 LysR substrate binding domain E3D14_00385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_00390 PF00593 TonB dependent receptor E3D14_00390 PF07715 TonB-dependent Receptor Plug Domain E3D14_00395 PF01177 Asp/Glu/Hydantoin racemase E3D14_00425 PF13607 Succinyl-CoA ligase like flavodoxin domain E3D14_00425 PF00583 Acetyltransferase (GNAT) family E3D14_00425 PF13380 CoA binding domain E3D14_00440 PF03466 LysR substrate binding domain E3D14_00440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_00445 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain E3D14_00445 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain E3D14_00450 PF00342 Phosphoglucose isomerase E3D14_00465 PF00924 Mechanosensitive ion channel E3D14_00465 PF05552 Conserved TM helix E3D14_00470 PF00440 Bacterial regulatory proteins, tetR family E3D14_00475 PF00692 dUTPase E3D14_00480 PF04127 DNA / pantothenate metabolism flavoprotein E3D14_00480 PF02441 Flavoprotein E3D14_00485 PF04002 RadC-like JAB domain E3D14_00490 PF00830 Ribosomal L28 family E3D14_00495 PF00471 Ribosomal protein L33 E3D14_00505 PF06827 Zinc finger found in FPG and IleRS E3D14_00505 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain E3D14_00505 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain E3D14_00510 PF04393 Protein of unknown function (DUF535) E3D14_00515 PF01467 Cytidylyltransferase-like E3D14_00520 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3D14_00525 PF00535 Glycosyl transferase family 2 E3D14_00530 PF01075 Glycosyltransferase family 9 (heptosyltransferase) E3D14_00535 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) E3D14_00540 PF03611 PTS system sugar-specific permease component E3D14_00550 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3D14_00555 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3D14_00555 PF00356 Bacterial regulatory proteins, lacI family E3D14_00580 PF03748 Flagellar basal body-associated protein FliL E3D14_00585 PF04345 Chorismate lyase E3D14_00590 PF01040 UbiA prenyltransferase family E3D14_00595 PF01553 Acyltransferase E3D14_00600 PF01726 LexA DNA binding domain E3D14_00600 PF00717 Peptidase S24-like E3D14_00610 PF02630 SCO1/SenC E3D14_00620 PF00588 SpoU rRNA Methylase family E3D14_00625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_00625 PF16527 Two-component sensor protein CpxA, periplasmic domain E3D14_00625 PF00672 HAMP domain E3D14_00625 PF00512 His Kinase A (phospho-acceptor) domain E3D14_00630 PF00072 Response regulator receiver domain E3D14_00630 PF00486 Transcriptional regulatory protein, C terminal E3D14_00635 PF01545 Cation efflux family E3D14_00635 PF16916 Dimerisation domain of Zinc Transporter E3D14_00640 PF06426 Serine acetyltransferase, N-terminal E3D14_00640 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_00650 PF06005 Cell division protein ZapB E3D14_00665 PF01612 3'-5' exonuclease E3D14_00665 PF00476 DNA polymerase family A E3D14_00665 PF01367 5'-3' exonuclease, C-terminal SAM fold E3D14_00665 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3D14_00670 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_00715 PF13593 SBF-like CPA transporter family (DUF4137) E3D14_00720 PF12867 DinB superfamily E3D14_00720 PF03781 Sulfatase-modifying factor enzyme 1 E3D14_00730 PF00756 Putative esterase E3D14_00735 PF00107 Zinc-binding dehydrogenase E3D14_00735 PF08240 Alcohol dehydrogenase GroES-like domain E3D14_00740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_00740 PF03466 LysR substrate binding domain E3D14_00765 PF13361 UvrD-like helicase C-terminal domain E3D14_00765 PF00580 UvrD/REP helicase N-terminal domain E3D14_00800 PF04972 BON domain E3D14_00820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_00820 PF03466 LysR substrate binding domain E3D14_00825 PF01810 LysE type translocator E3D14_00830 PF04143 Sulphur transport E3D14_00835 PF00690 Cation transporter/ATPase, N-terminus E3D14_00835 PF00689 Cation transporting ATPase, C-terminus E3D14_00840 PF01810 LysE type translocator E3D14_00845 PF12833 Helix-turn-helix domain E3D14_00850 PF00892 EamA-like transporter family E3D14_00860 PF00171 Aldehyde dehydrogenase family E3D14_00865 PF01381 Helix-turn-helix E3D14_00870 PF00202 Aminotransferase class-III E3D14_00875 PF00171 Aldehyde dehydrogenase family E3D14_00880 PF00117 Glutamine amidotransferase class-I E3D14_00880 PF02540 NAD synthase E3D14_00880 PF00958 GMP synthase C terminal domain E3D14_00885 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E3D14_00885 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E3D14_00890 PF00294 pfkB family carbohydrate kinase E3D14_00895 PF02082 Transcriptional regulator E3D14_00910 PF02646 RmuC family E3D14_00915 PF02386 Cation transport protein E3D14_00920 PF02254 TrkA-N domain E3D14_00920 PF02080 TrkA-C domain E3D14_00925 PF01029 NusB family E3D14_00925 PF01189 16S rRNA methyltransferase RsmB/F E3D14_00930 PF02911 Formyl transferase, C-terminal domain E3D14_00930 PF00551 Formyl transferase E3D14_00935 PF01327 Polypeptide deformylase E3D14_00940 PF01476 LysM domain E3D14_00945 PF17782 DprA winged helix domain E3D14_00945 PF02481 DNA recombination-mediator protein A E3D14_00950 PF04361 Protein of unknown function (DUF494) E3D14_00955 PF01396 Topoisomerase DNA binding C4 zinc finger E3D14_00960 PF00731 AIR carboxylase E3D14_00965 PF01300 Telomere recombination E3D14_00970 PF01218 Coproporphyrinogen III oxidase E3D14_00975 PF08501 Shikimate dehydrogenase substrate binding domain E3D14_00975 PF01488 Shikimate / quinate 5-dehydrogenase E3D14_00975 PF18317 Shikimate 5'-dehydrogenase C-terminal domain E3D14_00980 PF07369 Protein of unknown function (DUF1488) E3D14_00985 PF01926 50S ribosome-binding GTPase E3D14_00990 PF00034 Cytochrome c E3D14_00995 PF04220 Der GTPase activator (YihI) E3D14_01000 PF10675 Protein of unknown function (DUF2489) E3D14_01005 PF06969 HemN C-terminal domain E3D14_01005 PF04055 Radical SAM superfamily E3D14_01010 PF00962 Adenosine/AMP deaminase E3D14_01015 PF00158 Sigma-54 interaction domain E3D14_01015 PF00072 Response regulator receiver domain E3D14_01015 PF02954 Bacterial regulatory protein, Fis family E3D14_01020 PF00512 His Kinase A (phospho-acceptor) domain E3D14_01020 PF00989 PAS fold E3D14_01020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_01030 PF03951 Glutamine synthetase, beta-Grasp domain E3D14_01030 PF00120 Glutamine synthetase, catalytic domain E3D14_01040 PF03631 Virulence factor BrkB E3D14_01055 PF00583 Acetyltransferase (GNAT) family E3D14_01055 PF09500 Putative thioesterase (yiiD_Cterm) E3D14_01065 PF00271 Helicase conserved C-terminal domain E3D14_01065 PF17191 RecG wedge domain E3D14_01065 PF00270 DEAD/DEAH box helicase E3D14_01070 PF13091 PLD-like domain E3D14_01075 PF02447 GntP family permease E3D14_01080 PF01202 Shikimate kinase E3D14_01085 PF00920 Dehydratase family E3D14_01090 PF01081 KDPG and KHG aldolase E3D14_01105 PF01551 Peptidase family M23 E3D14_01110 PF01676 Metalloenzyme superfamily E3D14_01110 PF06415 BPG-independent PGAM N-terminus (iPGM_N) E3D14_01115 PF00581 Rhodanese-like domain E3D14_01120 PF02556 Preprotein translocase subunit SecB E3D14_01125 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus E3D14_01125 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus E3D14_01130 PF01106 NifU-like domain E3D14_01130 PF01521 Iron-sulphur cluster biosynthesis E3D14_01135 PF00156 Phosphoribosyl transferase domain E3D14_01140 PF00561 alpha/beta hydrolase fold E3D14_01160 PF17674 HHH domain E3D14_01160 PF00575 S1 RNA binding domain E3D14_01160 PF09371 Tex-like protein N-terminal domain E3D14_01160 PF16921 Tex protein YqgF-like domain E3D14_01165 PF01272 Transcription elongation factor, GreA/GreB, C-term E3D14_01165 PF03449 Transcription elongation factor, N-terminal E3D14_01170 PF00072 Response regulator receiver domain E3D14_01170 PF00486 Transcriptional regulatory protein, C terminal E3D14_01175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_01175 PF00672 HAMP domain E3D14_01175 PF00512 His Kinase A (phospho-acceptor) domain E3D14_01185 PF00338 Ribosomal protein S10p/S20e E3D14_01190 PF00297 Ribosomal protein L3 E3D14_01195 PF00573 Ribosomal protein L4/L1 family E3D14_01200 PF00276 Ribosomal protein L23 E3D14_01205 PF03947 Ribosomal Proteins L2, C-terminal domain E3D14_01205 PF00181 Ribosomal Proteins L2, RNA binding domain E3D14_01210 PF00203 Ribosomal protein S19 E3D14_01215 PF00237 Ribosomal protein L22p/L17e E3D14_01220 PF00189 Ribosomal protein S3, C-terminal domain E3D14_01220 PF07650 KH domain E3D14_01225 PF00252 Ribosomal protein L16p/L10e E3D14_01230 PF00831 Ribosomal L29 protein E3D14_01235 PF00366 Ribosomal protein S17 E3D14_01240 PF00238 Ribosomal protein L14p/L23e E3D14_01245 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 E3D14_01250 PF00281 Ribosomal protein L5 E3D14_01250 PF00673 ribosomal L5P family C-terminus E3D14_01255 PF00253 Ribosomal protein S14p/S29e E3D14_01260 PF00410 Ribosomal protein S8 E3D14_01265 PF00347 Ribosomal protein L6 E3D14_01270 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast E3D14_01275 PF00333 Ribosomal protein S5, N-terminal domain E3D14_01275 PF03719 Ribosomal protein S5, C-terminal domain E3D14_01280 PF00327 Ribosomal protein L30p/L7e E3D14_01285 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A E3D14_01290 PF00344 SecY translocase E3D14_01295 PF00444 Ribosomal protein L36 E3D14_01300 PF00416 Ribosomal protein S13/S18 E3D14_01305 PF00411 Ribosomal protein S11 E3D14_01310 PF00163 Ribosomal protein S4/S9 N-terminal domain E3D14_01310 PF01479 S4 domain E3D14_01315 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain E3D14_01315 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain E3D14_01315 PF01000 RNA polymerase Rpb3/RpoA insert domain E3D14_01320 PF01196 Ribosomal protein L17 E3D14_01365 PF01695 IstB-like ATP binding protein E3D14_01370 PF00665 Integrase core domain E3D14_01380 PF02733 Dak1 domain E3D14_01385 PF02734 DAK2 domain E3D14_01390 PF03610 PTS system fructose IIA component E3D14_01390 PF05524 PEP-utilising enzyme, N-terminal E3D14_01390 PF00391 PEP-utilising enzyme, mobile domain E3D14_01390 PF00381 PTS HPr component phosphorylation site E3D14_01395 PF00465 Iron-containing alcohol dehydrogenase E3D14_01400 PF02954 Bacterial regulatory protein, Fis family E3D14_01400 PF00989 PAS fold E3D14_01400 PF00158 Sigma-54 interaction domain E3D14_01405 PF01594 AI-2E family transporter E3D14_01410 PF00293 NUDIX domain E3D14_01435 PF06628 Catalase-related immune-responsive E3D14_01435 PF00199 Catalase E3D14_01460 PF00990 Diguanylate cyclase, GGDEF domain E3D14_01470 PF08402 TOBE domain E3D14_01470 PF00005 ABC transporter E3D14_01480 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_01495 PF07702 UTRA domain E3D14_01495 PF00392 Bacterial regulatory proteins, gntR family E3D14_01515 PF17954 Quercetinase C-terminal cupin domain E3D14_01515 PF02678 Pirin E3D14_01520 PF07681 DoxX E3D14_01525 PF17946 RecC C-terminal domain E3D14_01530 PF00580 UvrD/REP helicase N-terminal domain E3D14_01530 PF13361 UvrD-like helicase C-terminal domain E3D14_01530 PF12705 PD-(D/E)XK nuclease superfamily E3D14_01535 PF13538 UvrD-like helicase C-terminal domain E3D14_01545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_01560 PF00909 Ammonium Transporter Family E3D14_01565 PF00543 Nitrogen regulatory protein P-II E3D14_01570 PF00990 Diguanylate cyclase, GGDEF domain E3D14_01570 PF00072 Response regulator receiver domain E3D14_01580 PF02743 Cache domain E3D14_01580 PF00672 HAMP domain E3D14_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_01600 PF00486 Transcriptional regulatory protein, C terminal E3D14_01600 PF00072 Response regulator receiver domain E3D14_01605 PF00672 HAMP domain E3D14_01605 PF00512 His Kinase A (phospho-acceptor) domain E3D14_01605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_01610 PF00990 Diguanylate cyclase, GGDEF domain E3D14_01620 PF00313 'Cold-shock' DNA-binding domain E3D14_01625 PF17151 Periplasmic sensor domain E3D14_01625 PF00990 Diguanylate cyclase, GGDEF domain E3D14_01630 PF00005 ABC transporter E3D14_01630 PF17760 UvrA interaction domain E3D14_01630 PF17755 UvrA DNA-binding domain E3D14_01635 PF00196 Bacterial regulatory proteins, luxR family E3D14_01640 PF00436 Single-strand binding protein family E3D14_01655 PF16916 Dimerisation domain of Zinc Transporter E3D14_01655 PF01545 Cation efflux family E3D14_01685 PF00999 Sodium/hydrogen exchanger family E3D14_01685 PF02254 TrkA-N domain E3D14_01690 PF02525 Flavodoxin-like fold E3D14_01705 PF00326 Prolyl oligopeptidase family E3D14_01705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3D14_01730 PF07947 YhhN family E3D14_01735 PF07690 Major Facilitator Superfamily E3D14_01740 PF13533 Biotin-lipoyl like E3D14_01755 PF00375 Sodium:dicarboxylate symporter family E3D14_01760 PF10678 Protein of unknown function (DUF2492) E3D14_01765 PF01914 MarC family integral membrane protein E3D14_01770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_01770 PF03466 LysR substrate binding domain E3D14_01775 PF02416 mttA/Hcf106 family E3D14_01785 PF01464 Transglycosylase SLT domain E3D14_01785 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_01790 PF13091 PLD-like domain E3D14_01800 PF00440 Bacterial regulatory proteins, tetR family E3D14_01825 PF00448 SRP54-type protein, GTPase domain E3D14_01825 PF02881 SRP54-type protein, helical bundle domain E3D14_01830 PF00005 ABC transporter E3D14_01835 PF18075 FtsX extracellular domain E3D14_01840 PF04542 Sigma-70 region 2 E3D14_01840 PF04545 Sigma-70, region 4 E3D14_01840 PF00140 Sigma-70 factor, region 1.2 E3D14_01845 PF00484 Carbonic anhydrase E3D14_01850 PF07702 UTRA domain E3D14_01850 PF00392 Bacterial regulatory proteins, gntR family E3D14_01855 PF01979 Amidohydrolase family E3D14_01860 PF00491 Arginase family E3D14_01865 PF17391 Urocanase N-terminal domain E3D14_01865 PF17392 Urocanase C-terminal domain E3D14_01865 PF01175 Urocanase Rossmann-like domain E3D14_01870 PF00221 Aromatic amino acid lyase E3D14_01875 PF01699 Sodium/calcium exchanger protein E3D14_01885 PF17157 Gammaproteobacterial periplasmic sensor domain E3D14_01885 PF00563 EAL domain E3D14_01885 PF00990 Diguanylate cyclase, GGDEF domain E3D14_01915 PF00263 Bacterial type II and III secretion system protein E3D14_01915 PF03958 Bacterial type II/III secretion system short domain E3D14_01950 PF04085 rod shape-determining protein MreC E3D14_01955 PF04093 rod shape-determining protein MreD E3D14_01960 PF02545 Maf-like protein E3D14_01965 PF10150 Ribonuclease E/G family E3D14_01965 PF00575 S1 RNA binding domain E3D14_01970 PF13502 AsmA-like C-terminal region E3D14_01970 PF13116 Protein of unknown function E3D14_01980 PF00795 Carbon-nitrogen hydrolase E3D14_01985 PF01523 Putative modulator of DNA gyrase E3D14_01995 PF01914 MarC family integral membrane protein E3D14_02010 PF00072 Response regulator receiver domain E3D14_02015 PF00512 His Kinase A (phospho-acceptor) domain E3D14_02015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3D14_02015 PF00072 Response regulator receiver domain E3D14_02015 PF01627 Hpt domain E3D14_02015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_02015 PF00672 HAMP domain E3D14_02020 PF13581 Histidine kinase-like ATPase domain E3D14_02025 PF08678 Rsbr N terminal E3D14_02025 PF01740 STAS domain E3D14_02030 PF08447 PAS fold E3D14_02030 PF13426 PAS domain E3D14_02030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_02035 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) E3D14_02045 PF08668 HDOD domain E3D14_02060 PF00999 Sodium/hydrogen exchanger family E3D14_02065 PF00809 Pterin binding enzyme E3D14_02065 PF02310 B12 binding domain E3D14_02065 PF02574 Homocysteine S-methyltransferase E3D14_02065 PF02607 B12 binding domain E3D14_02065 PF02965 Vitamin B12 dependent methionine synthase, activation domain E3D14_02070 PF08443 RimK-like ATP-grasp domain E3D14_02070 PF18030 RimK PreATP-grasp domain E3D14_02080 PF00072 Response regulator receiver domain E3D14_02080 PF00486 Transcriptional regulatory protein, C terminal E3D14_02095 PF01117 Aerolysin toxin E3D14_02095 PF03440 Aerolysin/Pertussis toxin (APT) domain E3D14_02100 PF01964 Radical SAM ThiC family E3D14_02100 PF13667 ThiC-associated domain E3D14_02105 PF02581 Thiamine monophosphate synthase E3D14_02110 PF00899 ThiF family E3D14_02120 PF05690 Thiazole biosynthesis protein ThiG E3D14_02125 PF04055 Radical SAM superfamily E3D14_02125 PF06968 Biotin and Thiamin Synthesis associated domain E3D14_02165 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_02170 PF13036 Peptidoglycan-synthase activator LpoB E3D14_02190 PF06055 Exopolysaccharide synthesis, ExoD E3D14_02200 PF08803 Putative mono-oxygenase ydhR E3D14_02225 PF07715 TonB-dependent Receptor Plug Domain E3D14_02225 PF00593 TonB dependent receptor E3D14_02240 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded E3D14_02255 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase E3D14_02260 PF02602 Uroporphyrinogen-III synthase HemD E3D14_02265 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain E3D14_02265 PF03900 Porphobilinogen deaminase, C-terminal domain E3D14_02270 PF01295 Adenylate cyclase, class-I E3D14_02270 PF12633 Adenylate cyclase NT domain E3D14_02290 PF01491 Frataxin-like domain E3D14_02300 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3D14_02300 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3D14_02305 PF01678 Diaminopimelate epimerase E3D14_02315 PF00589 Phage integrase family E3D14_02315 PF02899 Phage integrase, N-terminal SAM-like domain E3D14_02320 PF13419 Haloacid dehalogenase-like hydrolase E3D14_02330 PF00924 Mechanosensitive ion channel E3D14_02340 PF07722 Peptidase C26 E3D14_02360 PF00005 ABC transporter E3D14_02370 PF02464 Competence-damaged protein E3D14_02370 PF00994 Probable molybdopterin binding domain E3D14_02375 PF00013 KH domain E3D14_02375 PF12072 Domain of unknown function (DUF3552) E3D14_02375 PF01966 HD domain E3D14_02380 PF04204 Homoserine O-succinyltransferase E3D14_02390 PF01037 Lrp/AsnC ligand binding domain E3D14_02395 PF00884 Sulfatase E3D14_02410 PF00128 Alpha amylase, catalytic domain E3D14_02410 PF16657 Maltogenic Amylase, C-terminal domain E3D14_02410 PF02903 Alpha amylase, N-terminal ig-like domain E3D14_02415 PF02308 MgtC family E3D14_02435 PF00106 short chain dehydrogenase E3D14_02440 PF03577 Peptidase family C69 E3D14_02455 PF00465 Iron-containing alcohol dehydrogenase E3D14_02465 PF01053 Cys/Met metabolism PLP-dependent enzyme E3D14_02475 PF12793 Sugar transport-related sRNA regulator N-term E3D14_02475 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_02480 PF00141 Peroxidase E3D14_02495 PF03280 Proteobacterial lipase chaperone protein E3D14_02500 PF00561 alpha/beta hydrolase fold E3D14_02510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3D14_02510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3D14_02515 PF02698 DUF218 domain E3D14_02520 PF01752 Collagenase E3D14_02520 PF08453 Peptidase family M9 N-terminal E3D14_02530 PF00419 Fimbrial protein E3D14_02540 PF13954 PapC N-terminal domain E3D14_02540 PF13953 PapC C-terminal domain E3D14_02540 PF00577 Outer membrane usher protein E3D14_02545 PF02753 Pili assembly chaperone PapD, C-terminal domain E3D14_02545 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain E3D14_02550 PF00419 Fimbrial protein E3D14_02555 PF00419 Fimbrial protein E3D14_02565 PF00501 AMP-binding enzyme E3D14_02570 PF13378 Enolase C-terminal domain-like E3D14_02575 PF00378 Enoyl-CoA hydratase/isomerase E3D14_02580 PF12697 Alpha/beta hydrolase family E3D14_02585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D14_02585 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D14_02585 PF16582 Middle domain of thiamine pyrophosphate E3D14_02590 PF00425 chorismate binding enzyme E3D14_02595 PF01040 UbiA prenyltransferase family E3D14_02620 PF00271 Helicase conserved C-terminal domain E3D14_02620 PF03880 DbpA RNA binding domain E3D14_02620 PF00270 DEAD/DEAH box helicase E3D14_02625 PF07662 Na+ dependent nucleoside transporter C-terminus E3D14_02625 PF07670 Nucleoside recognition E3D14_02625 PF01773 Na+ dependent nucleoside transporter N-terminus E3D14_02630 PF04307 LexA-binding, inner membrane-associated putative hydrolase E3D14_02645 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 E3D14_02650 PF01544 CorA-like Mg2+ transporter protein E3D14_02665 PF00684 DnaJ central domain E3D14_02665 PF00226 DnaJ domain E3D14_02665 PF01556 DnaJ C terminal domain E3D14_02670 PF03471 Transporter associated domain E3D14_02670 PF02080 TrkA-C domain E3D14_02670 PF00999 Sodium/hydrogen exchanger family E3D14_02675 PF05068 Mannitol repressor E3D14_02680 PF08125 Mannitol dehydrogenase C-terminal domain E3D14_02680 PF01232 Mannitol dehydrogenase Rossmann domain E3D14_02685 PF02378 Phosphotransferase system, EIIC E3D14_02685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3D14_02685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3D14_02700 PF17876 Cold shock domain E3D14_02700 PF08206 Ribonuclease B OB domain E3D14_02700 PF00773 RNB domain E3D14_02705 PF03466 LysR substrate binding domain E3D14_02705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_02710 PF00765 Autoinducer synthase E3D14_02715 PF03472 Autoinducer binding domain E3D14_02715 PF00196 Bacterial regulatory proteins, luxR family E3D14_02720 PF01810 LysE type translocator E3D14_02725 PF00149 Calcineurin-like phosphoesterase E3D14_02725 PF02872 5'-nucleotidase, C-terminal domain E3D14_02730 PF05433 Glycine zipper 2TM domain E3D14_02735 PF00583 Acetyltransferase (GNAT) family E3D14_02740 PF11756 Nitrous oxide-stimulated promoter E3D14_02745 PF00557 Metallopeptidase family M24 E3D14_02745 PF01321 Creatinase/Prolidase N-terminal domain E3D14_02750 PF00392 Bacterial regulatory proteins, gntR family E3D14_02755 PF01293 Phosphoenolpyruvate carboxykinase E3D14_02760 PF01430 Hsp33 protein E3D14_02765 PF01479 S4 domain E3D14_02770 PF11356 Type II secretion system protein C E3D14_02775 PF00263 Bacterial type II and III secretion system protein E3D14_02775 PF03958 Bacterial type II/III secretion system short domain E3D14_02780 PF00437 Type II/IV secretion system protein E3D14_02785 PF00482 Type II secretion system (T2SS), protein F E3D14_02790 PF07963 Prokaryotic N-terminal methylation motif E3D14_02790 PF08334 Type II secretion system (T2SS), protein G E3D14_02795 PF12019 Type II transport protein GspH E3D14_02795 PF07963 Prokaryotic N-terminal methylation motif E3D14_02800 PF02501 Type II secretion system (T2SS), protein I E3D14_02800 PF07963 Prokaryotic N-terminal methylation motif E3D14_02805 PF11612 Type II secretion system (T2SS), protein J E3D14_02805 PF07963 Prokaryotic N-terminal methylation motif E3D14_02810 PF03934 Type II secretion system (T2SS), protein K E3D14_02815 PF12693 GspL periplasmic domain E3D14_02815 PF05134 Type II secretion system (T2SS), protein L E3D14_02820 PF04612 Type II secretion system (T2SS), protein M E3D14_02825 PF01203 Type II secretion system (T2SS), protein N E3D14_02830 PF00196 Bacterial regulatory proteins, luxR family E3D14_02835 PF01479 S4 domain E3D14_02835 PF00579 tRNA synthetases class I (W and Y) E3D14_02840 PF13419 Haloacid dehalogenase-like hydrolase E3D14_02845 PF00293 NUDIX domain E3D14_02850 PF00459 Inositol monophosphatase family E3D14_02855 PF03222 Tryptophan/tyrosine permease family E3D14_02860 PF01588 Putative tRNA binding domain E3D14_02865 PF02311 AraC-like ligand binding domain E3D14_02865 PF12833 Helix-turn-helix domain E3D14_02870 PF01340 Met Apo-repressor, MetJ E3D14_02875 PF01053 Cys/Met metabolism PLP-dependent enzyme E3D14_02880 PF00742 Homoserine dehydrogenase E3D14_02880 PF03447 Homoserine dehydrogenase, NAD binding domain E3D14_02880 PF00696 Amino acid kinase family E3D14_02895 PF04172 LrgB-like family E3D14_02900 PF03788 LrgA family E3D14_02915 PF00392 Bacterial regulatory proteins, gntR family E3D14_02915 PF00155 Aminotransferase class I and II E3D14_02935 PF04073 Aminoacyl-tRNA editing domain E3D14_02940 PF02464 Competence-damaged protein E3D14_02945 PF00154 recA bacterial DNA recombination protein E3D14_02950 PF02631 RecX family E3D14_02955 PF01411 tRNA synthetases class II (A) E3D14_02955 PF02272 DHHA1 domain E3D14_02955 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3D14_02960 PF00696 Amino acid kinase family E3D14_02960 PF01842 ACT domain E3D14_02960 PF13840 ACT domain E3D14_02965 PF02599 Global regulator protein family E3D14_02990 PF00768 D-alanyl-D-alanine carboxypeptidase E3D14_02995 PF09335 SNARE associated Golgi protein E3D14_03000 PF01595 Cyclin M transmembrane N-terminal domain E3D14_03000 PF00571 CBS domain E3D14_03000 PF03471 Transporter associated domain E3D14_03005 PF00133 tRNA synthetases class I (I, L, M and V) E3D14_03005 PF10458 Valyl tRNA synthetase tRNA binding arm E3D14_03005 PF08264 Anticodon-binding domain of tRNA E3D14_03010 PF04364 DNA polymerase III chi subunit, HolC E3D14_03015 PF00883 Cytosol aminopeptidase family, catalytic domain E3D14_03015 PF02789 Cytosol aminopeptidase family, N-terminal domain E3D14_03020 PF03739 Lipopolysaccharide export system permease LptF/LptG E3D14_03025 PF03739 Lipopolysaccharide export system permease LptF/LptG E3D14_03240 PF06892 Phage regulatory protein CII (CP76) E3D14_03250 PF01381 Helix-turn-helix E3D14_03250 PF00717 Peptidase S24-like E3D14_03255 PF02899 Phage integrase, N-terminal SAM-like domain E3D14_03255 PF00589 Phage integrase family E3D14_03260 PF13356 Arm DNA-binding domain E3D14_03260 PF00589 Phage integrase family E3D14_03280 PF08346 AntA/AntB antirepressor E3D14_03280 PF10548 P22AR C-terminal domain E3D14_03300 PF08401 Domain of unknown function (DUF1738) E3D14_03300 PF13362 Toprim domain E3D14_03300 PF18818 Metallopeptidase superfamily domain E3D14_03325 PF02661 Fic/DOC family E3D14_03325 PF13784 Fic/DOC family N-terminal E3D14_03330 PF00909 Ammonium Transporter Family E3D14_03335 PF05958 tRNA (Uracil-5-)-methyltransferase E3D14_03335 PF01938 TRAM domain E3D14_03340 PF00583 Acetyltransferase (GNAT) family E3D14_03355 PF01026 TatD related DNase E3D14_03360 PF01773 Na+ dependent nucleoside transporter N-terminus E3D14_03360 PF07662 Na+ dependent nucleoside transporter C-terminus E3D14_03360 PF07670 Nucleoside recognition E3D14_03370 PF01791 DeoC/LacD family aldolase E3D14_03375 PF00591 Glycosyl transferase family, a/b domain E3D14_03375 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain E3D14_03375 PF02885 Glycosyl transferase family, helical bundle domain E3D14_03380 PF01676 Metalloenzyme superfamily E3D14_03385 PF01048 Phosphorylase superfamily E3D14_03395 PF18429 Domain of unknown function (DUF5609) E3D14_03410 PF18073 Rubredoxin metal binding domain E3D14_03415 PF07238 PilZ domain E3D14_03420 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ E3D14_03425 PF00216 Bacterial DNA-binding protein E3D14_03440 PF01207 Dihydrouridine synthase (Dus) E3D14_03445 PF01475 Ferric uptake regulator family E3D14_03460 PF05525 Branched-chain amino acid transport protein E3D14_03465 PF05175 Methyltransferase small domain E3D14_03470 PF00270 DEAD/DEAH box helicase E3D14_03470 PF00271 Helicase conserved C-terminal domain E3D14_03475 PF03883 Peroxide stress protein YaaA E3D14_03480 PF00437 Type II/IV secretion system protein E3D14_03485 PF00437 Type II/IV secretion system protein E3D14_03490 PF01168 Alanine racemase, N-terminal domain E3D14_03495 PF03807 NADP oxidoreductase coenzyme F420-dependent E3D14_03495 PF14748 Pyrroline-5-carboxylate reductase dimerisation E3D14_03500 PF02325 YGGT family E3D14_03505 PF02594 Uncharacterised ACR, YggU family COG1872 E3D14_03520 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_03530 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_03535 PF10952 Protein of unknown function (DUF2753) E3D14_03540 PF00378 Enoyl-CoA hydratase/isomerase E3D14_03555 PF00106 short chain dehydrogenase E3D14_03560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_03560 PF03466 LysR substrate binding domain E3D14_03565 PF04371 Porphyromonas-type peptidyl-arginine deiminase E3D14_03570 PF01425 Amidase E3D14_03590 PF00753 Metallo-beta-lactamase superfamily E3D14_03600 PF00271 Helicase conserved C-terminal domain E3D14_03600 PF00270 DEAD/DEAH box helicase E3D14_03605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_03605 PF03466 LysR substrate binding domain E3D14_03620 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase E3D14_03640 PF00445 Ribonuclease T2 family E3D14_03650 PF03060 Nitronate monooxygenase E3D14_03680 PF00293 NUDIX domain E3D14_03680 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain E3D14_03680 PF09297 NADH pyrophosphatase zinc ribbon domain E3D14_03685 PF00672 HAMP domain E3D14_03685 PF16527 Two-component sensor protein CpxA, periplasmic domain E3D14_03685 PF00512 His Kinase A (phospho-acceptor) domain E3D14_03685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_03690 PF00486 Transcriptional regulatory protein, C terminal E3D14_03690 PF00072 Response regulator receiver domain E3D14_03695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_03700 PF02687 FtsX-like permease family E3D14_03700 PF00005 ABC transporter E3D14_03700 PF12704 MacB-like periplasmic core domain E3D14_03705 PF00326 Prolyl oligopeptidase family E3D14_03705 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3D14_03710 PF05170 AsmA family E3D14_03735 PF08335 GlnD PII-uridylyltransferase E3D14_03735 PF03710 Glutamate-ammonia ligase adenylyltransferase E3D14_03740 PF03608 PTS system enzyme II sorbitol-specific factor E3D14_03745 PF03612 Sorbitol phosphotransferase enzyme II N-terminus E3D14_03745 PF07663 Sorbitol phosphotransferase enzyme II C-terminus E3D14_03750 PF03829 PTS system glucitol/sorbitol-specific IIA component E3D14_03755 PF00106 short chain dehydrogenase E3D14_03765 PF00455 DeoR C terminal sensor domain E3D14_03765 PF08220 DeoR-like helix-turn-helix domain E3D14_03770 PF08335 GlnD PII-uridylyltransferase E3D14_03770 PF03710 Glutamate-ammonia ligase adenylyltransferase E3D14_03785 PF00293 NUDIX domain E3D14_03790 PF00107 Zinc-binding dehydrogenase E3D14_03790 PF16884 N-terminal domain of oxidoreductase E3D14_03795 PF02566 OsmC-like protein E3D14_03800 PF01047 MarR family E3D14_03815 PF01037 Lrp/AsnC ligand binding domain E3D14_03830 PF07690 Major Facilitator Superfamily E3D14_03850 PF00209 Sodium:neurotransmitter symporter family E3D14_03860 PF00209 Sodium:neurotransmitter symporter family E3D14_03895 PF01810 LysE type translocator E3D14_03900 PF01177 Asp/Glu/Hydantoin racemase E3D14_03910 PF04074 YhcH/YjgK/YiaL E3D14_03915 PF00871 Acetokinase family E3D14_03920 PF00924 Mechanosensitive ion channel E3D14_03925 PF03734 L,D-transpeptidase catalytic domain E3D14_03925 PF17969 L,D-transpeptidase C-terminal domain E3D14_03930 PF00474 Sodium:solute symporter family E3D14_03940 PF13411 MerR HTH family regulatory protein E3D14_04010 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ E3D14_04020 PF12848 ABC transporter E3D14_04020 PF00005 ABC transporter E3D14_04025 PF00571 CBS domain E3D14_04025 PF01380 SIS domain E3D14_04030 PF01957 NfeD-like C-terminal, partner-binding E3D14_04035 PF01145 SPFH domain / Band 7 family E3D14_04035 PF16200 C-terminal region of band_7 E3D14_04040 PF14824 Sirohaem biosynthesis protein central E3D14_04040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D14_04040 PF10414 Sirohaem synthase dimerisation region E3D14_04045 PF01507 Phosphoadenosine phosphosulfate reductase family E3D14_04050 PF00009 Elongation factor Tu GTP binding domain E3D14_04055 PF02080 TrkA-C domain E3D14_04055 PF03600 Citrate transporter E3D14_04075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_04075 PF08447 PAS fold E3D14_04095 PF00005 ABC transporter E3D14_04110 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) E3D14_04130 PF00480 ROK family E3D14_04135 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3D14_04135 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3D14_04140 PF00162 Phosphoglycerate kinase E3D14_04145 PF01116 Fructose-bisphosphate aldolase class-II E3D14_04150 PF01266 FAD dependent oxidoreductase E3D14_04160 PF11412 Disulphide bond corrector protein DsbC E3D14_04160 PF02683 Cytochrome C biogenesis protein transmembrane region E3D14_04165 PF03091 CutA1 divalent ion tolerance protein E3D14_04185 PF01571 Aminomethyltransferase folate-binding domain E3D14_04190 PF03937 Flavinator of succinate dehydrogenase E3D14_04200 PF00890 FAD binding domain E3D14_04200 PF02910 Fumarate reductase flavoprotein C-term E3D14_04205 PF04542 Sigma-70 region 2 E3D14_04205 PF08281 Sigma-70, region 4 E3D14_04210 PF03873 Anti sigma-E protein RseA, C-terminal domain E3D14_04210 PF03872 Anti sigma-E protein RseA, N-terminal domain E3D14_04215 PF17188 MucB/RseB C-terminal domain E3D14_04215 PF03888 MucB/RseB N-terminal domain E3D14_04225 PF03144 Elongation factor Tu domain 2 E3D14_04225 PF06421 GTP-binding protein LepA C-terminus E3D14_04225 PF00679 Elongation factor G C-terminus E3D14_04225 PF00009 Elongation factor Tu GTP binding domain E3D14_04230 PF10502 Signal peptidase, peptidase S26 E3D14_04235 PF00035 Double-stranded RNA binding motif E3D14_04235 PF14622 Ribonuclease-III-like E3D14_04240 PF07650 KH domain E3D14_04240 PF01926 50S ribosome-binding GTPase E3D14_04245 PF11967 Recombination protein O N terminal E3D14_04245 PF02565 Recombination protein O C terminal E3D14_04250 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ E3D14_04255 PF01510 N-acetylmuramoyl-L-alanine amidase E3D14_04260 PF07308 Protein of unknown function (DUF1456) E3D14_04265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_04265 PF00512 His Kinase A (phospho-acceptor) domain E3D14_04265 PF01627 Hpt domain E3D14_04265 PF00072 Response regulator receiver domain E3D14_04265 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3D14_04265 PF00672 HAMP domain E3D14_04270 PF01938 TRAM domain E3D14_04270 PF05958 tRNA (Uracil-5-)-methyltransferase E3D14_04275 PF04607 Region found in RelA / SpoT proteins E3D14_04275 PF02824 TGS domain E3D14_04275 PF13291 ACT domain E3D14_04280 PF03819 MazG nucleotide pyrophosphohydrolase domain E3D14_04285 PF06418 CTP synthase N-terminus E3D14_04285 PF00117 Glutamine amidotransferase class-I E3D14_04290 PF03952 Enolase, N-terminal domain E3D14_04290 PF00113 Enolase, C-terminal TIM barrel domain E3D14_04295 PF04977 Septum formation initiator E3D14_04300 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase E3D14_04305 PF02542 YgbB family E3D14_04310 PF01142 tRNA pseudouridine synthase D (TruD) E3D14_04315 PF01975 Survival protein SurE E3D14_04325 PF09335 SNARE associated Golgi protein E3D14_04330 PF01551 Peptidase family M23 E3D14_04330 PF01476 LysM domain E3D14_04335 PF04542 Sigma-70 region 2 E3D14_04335 PF04539 Sigma-70 region 3 E3D14_04335 PF04545 Sigma-70, region 4 E3D14_04335 PF00140 Sigma-70 factor, region 1.2 E3D14_04340 PF00814 Glycoprotease family E3D14_04345 PF01165 Ribosomal protein S21 E3D14_04350 PF09424 Yqey-like protein E3D14_04355 PF01807 CHC2 zinc finger E3D14_04355 PF08275 DNA primase catalytic core, N-terminal domain E3D14_04355 PF08278 DNA primase DnaG DnaB-binding E3D14_04355 PF10410 DnaB-helicase binding domain of primase E3D14_04360 PF04539 Sigma-70 region 3 E3D14_04360 PF04542 Sigma-70 region 2 E3D14_04360 PF04545 Sigma-70, region 4 E3D14_04360 PF00140 Sigma-70 factor, region 1.2 E3D14_04360 PF03979 Sigma-70 factor, region 1.1 E3D14_04360 PF04546 Sigma-70, non-essential region E3D14_04390 PF00128 Alpha amylase, catalytic domain E3D14_04405 PF02844 Phosphoribosylglycinamide synthetase, N domain E3D14_04405 PF02843 Phosphoribosylglycinamide synthetase, C domain E3D14_04405 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain E3D14_04410 PF01808 AICARFT/IMPCHase bienzyme E3D14_04410 PF02142 MGS-like domain E3D14_04415 PF13411 MerR HTH family regulatory protein E3D14_04420 PF01872 RibD C-terminal domain E3D14_04425 PF03889 Alternative ribosome-rescue factor A E3D14_04430 PF06969 HemN C-terminal domain E3D14_04430 PF04055 Radical SAM superfamily E3D14_04435 PF01725 Ham1 family E3D14_04440 PF07690 Major Facilitator Superfamily E3D14_04460 PF13302 Acetyltransferase (GNAT) domain E3D14_04465 PF13302 Acetyltransferase (GNAT) domain E3D14_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_04475 PF03466 LysR substrate binding domain E3D14_04480 PF07690 Major Facilitator Superfamily E3D14_04485 PF00267 Gram-negative porin E3D14_04490 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3D14_04495 PF10415 Fumarase C C-terminus E3D14_04495 PF00206 Lyase E3D14_04500 PF04186 FxsA cytoplasmic membrane protein E3D14_04510 PF00166 Chaperonin 10 Kd subunit E3D14_04515 PF00118 TCP-1/cpn60 chaperonin family E3D14_04525 PF00990 Diguanylate cyclase, GGDEF domain E3D14_04525 PF03707 Bacterial signalling protein N terminal repeat E3D14_04525 PF00563 EAL domain E3D14_04525 PF13188 PAS domain E3D14_04535 PF00849 RNA pseudouridylate synthase E3D14_04540 PF00271 Helicase conserved C-terminal domain E3D14_04540 PF18339 RapA N-terminal Tudor like domain 1 E3D14_04540 PF18337 RapA N-terminal Tudor like domain E3D14_04540 PF12137 RNA polymerase recycling family C-terminal E3D14_04540 PF00176 SNF2 family N-terminal domain E3D14_04570 PF02867 Ribonucleotide reductase, barrel domain E3D14_04570 PF00317 Ribonucleotide reductase, all-alpha domain E3D14_04570 PF08343 Ribonucleotide reductase N-terminal E3D14_04580 PF02562 PhoH-like protein E3D14_04580 PF13638 PIN domain E3D14_04585 PF00005 ABC transporter E3D14_04590 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_04610 PF00694 Aconitase C-terminal domain E3D14_04615 PF00330 Aconitase family (aconitate hydratase) E3D14_04620 PF00180 Isocitrate/isopropylmalate dehydrogenase E3D14_04625 PF00682 HMGL-like E3D14_04625 PF08502 LeuA allosteric (dimerisation) domain E3D14_04635 PF01569 PAP2 superfamily E3D14_04650 PF00205 Thiamine pyrophosphate enzyme, central domain E3D14_04650 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D14_04650 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D14_04655 PF10369 Small subunit of acetolactate synthase E3D14_04660 PF07085 DRTGG domain E3D14_04660 PF01515 Phosphate acetyl/butaryl transferase E3D14_04665 PF00871 Acetokinase family E3D14_04670 PF04217 Protein of unknown function, DUF412 E3D14_04675 PF03887 YfbU domain E3D14_04680 PF00578 AhpC/TSA family E3D14_04685 PF01842 ACT domain E3D14_04690 PF00701 Dihydrodipicolinate synthetase family E3D14_04695 PF06804 NlpB/DapX lipoprotein E3D14_04700 PF01259 SAICAR synthetase E3D14_04710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_04710 PF03466 LysR substrate binding domain E3D14_04735 PF18415 Histidine kinase receptor ArcB trans-membrane domain E3D14_04735 PF01627 Hpt domain E3D14_04735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_04735 PF00989 PAS fold E3D14_04735 PF00072 Response regulator receiver domain E3D14_04735 PF00512 His Kinase A (phospho-acceptor) domain E3D14_04740 PF01966 HD domain E3D14_04760 PF12729 Four helix bundle sensory module for signal transduction E3D14_04760 PF00672 HAMP domain E3D14_04760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_04765 PF02357 Transcription termination factor nusG E3D14_04770 PF03180 NLPA lipoprotein E3D14_04775 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_04780 PF00005 ABC transporter E3D14_04780 PF09383 NIL domain E3D14_04790 PF00480 ROK family E3D14_04795 PF08331 Domain of unknown function (DUF1730) E3D14_04805 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE E3D14_04810 PF01520 N-acetylmuramoyl-L-alanine amidase E3D14_04815 PF01119 DNA mismatch repair protein, C-terminal domain E3D14_04815 PF08676 MutL C terminal dimerisation domain E3D14_04825 PF17209 Hfq protein E3D14_04830 PF16360 GTP-binding GTPase Middle Region E3D14_04830 PF13167 GTP-binding GTPase N-terminal E3D14_04830 PF01926 50S ribosome-binding GTPase E3D14_04835 PF01145 SPFH domain / Band 7 family E3D14_04835 PF12221 Bacterial membrane protein N terminal E3D14_04840 PF01145 SPFH domain / Band 7 family E3D14_04845 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) E3D14_04850 PF00348 Polyprenyl synthetase E3D14_04855 PF00829 Ribosomal prokaryotic L21 protein E3D14_04860 PF01016 Ribosomal L27 protein E3D14_04865 PF01926 50S ribosome-binding GTPase E3D14_04865 PF01018 GTP1/OBG E3D14_04895 PF00296 Luciferase-like monooxygenase E3D14_04910 PF00149 Calcineurin-like phosphoesterase E3D14_04915 PF04379 ApaG domain E3D14_04920 PF00398 Ribosomal RNA adenine dimethylase E3D14_04925 PF04166 Pyridoxal phosphate biosynthetic protein PdxA E3D14_04930 PF09312 SurA N-terminal domain E3D14_04930 PF00639 PPIC-type PPIASE domain E3D14_04935 PF04453 LPS transport system D E3D14_04935 PF03968 OstA-like protein E3D14_04940 PF01636 Phosphotransferase enzyme family E3D14_04945 PF00483 Nucleotidyl transferase E3D14_04950 PF05099 Tellurite resistance protein TerB E3D14_04950 PF00226 DnaJ domain E3D14_04965 PF00005 ABC transporter E3D14_04965 PF12848 ABC transporter E3D14_04975 PF01370 NAD dependent epimerase/dehydratase family E3D14_04985 PF00005 ABC transporter E3D14_04990 PF01032 FecCD transport family E3D14_05000 PF06228 Haem utilisation ChuX/HutX E3D14_05005 PF01243 Pyridoxamine 5'-phosphate oxidase E3D14_05025 PF00593 TonB dependent receptor E3D14_05025 PF07715 TonB-dependent Receptor Plug Domain E3D14_05030 PF12832 MFS_1 like family E3D14_05040 PF13443 Cro/C1-type HTH DNA-binding domain E3D14_05060 PF17945 Beta/Gamma crystallin E3D14_05060 PF12561 ToxR activated gene A lipoprotein domain E3D14_05065 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E3D14_05065 PF18416 N-acetylglucosamine binding protein domain 2 E3D14_05070 PF08241 Methyltransferase domain E3D14_05075 PF00027 Cyclic nucleotide-binding domain E3D14_05075 PF13545 Crp-like helix-turn-helix domain E3D14_05080 PF02566 OsmC-like protein E3D14_05095 PF00485 Phosphoribulokinase / Uridine kinase family E3D14_05105 PF00892 EamA-like transporter family E3D14_05110 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase E3D14_05115 PF01522 Polysaccharide deacetylase E3D14_05125 PF00535 Glycosyl transferase family 2 E3D14_05130 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family E3D14_05135 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain E3D14_05135 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain E3D14_05135 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain E3D14_05140 PF06794 Uncharacterised protein family (UPF0270) E3D14_05145 PF00360 Phytochrome region E3D14_05145 PF00990 Diguanylate cyclase, GGDEF domain E3D14_05145 PF01590 GAF domain E3D14_05145 PF00563 EAL domain E3D14_05150 PF00561 alpha/beta hydrolase fold E3D14_05155 PF00072 Response regulator receiver domain E3D14_05155 PF01584 CheW-like domain E3D14_05165 PF09526 Probable metal-binding protein (DUF2387) E3D14_05170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_05175 PF04102 SlyX E3D14_05185 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3D14_05185 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_05190 PF00158 Sigma-54 interaction domain E3D14_05190 PF02954 Bacterial regulatory protein, Fis family E3D14_05190 PF00072 Response regulator receiver domain E3D14_05210 PF02872 5'-nucleotidase, C-terminal domain E3D14_05210 PF00149 Calcineurin-like phosphoesterase E3D14_05230 PF03796 DnaB-like helicase C terminal domain E3D14_05230 PF00772 DnaB-like helicase N terminal domain E3D14_05235 PF03796 DnaB-like helicase C terminal domain E3D14_05235 PF00772 DnaB-like helicase N terminal domain E3D14_05240 PF01168 Alanine racemase, N-terminal domain E3D14_05240 PF00842 Alanine racemase, C-terminal domain E3D14_05245 PF12838 4Fe-4S dicluster domain E3D14_05255 PF00563 EAL domain E3D14_05255 PF00989 PAS fold E3D14_05255 PF00990 Diguanylate cyclase, GGDEF domain E3D14_05255 PF01590 GAF domain E3D14_05285 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3D14_05285 PF00072 Response regulator receiver domain E3D14_05285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_05285 PF00512 His Kinase A (phospho-acceptor) domain E3D14_05285 PF00672 HAMP domain E3D14_05285 PF01627 Hpt domain E3D14_05310 PF00266 Aminotransferase class-V E3D14_05315 PF00072 Response regulator receiver domain E3D14_05315 PF01339 CheB methylesterase E3D14_05320 PF03975 CheD chemotactic sensory transduction E3D14_05325 PF03705 CheR methyltransferase, all-alpha domain E3D14_05325 PF01739 CheR methyltransferase, SAM binding domain E3D14_05330 PF00672 HAMP domain E3D14_05330 PF02203 Tar ligand binding domain homologue E3D14_05330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_05335 PF01584 CheW-like domain E3D14_05340 PF00672 HAMP domain E3D14_05340 PF12729 Four helix bundle sensory module for signal transduction E3D14_05340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_05345 PF02895 Signal transducing histidine kinase, homodimeric domain E3D14_05345 PF01584 CheW-like domain E3D14_05345 PF01627 Hpt domain E3D14_05345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_05365 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3D14_05365 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3D14_05370 PF03466 LysR substrate binding domain E3D14_05370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_05375 PF01810 LysE type translocator E3D14_05390 PF06906 Protein of unknown function (DUF1272) E3D14_05400 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3D14_05400 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3D14_05405 PF02805 Metal binding domain of Ada E3D14_05405 PF06029 AlkA N-terminal domain E3D14_05405 PF00730 HhH-GPD superfamily base excision DNA repair protein E3D14_05405 PF12833 Helix-turn-helix domain E3D14_05415 PF02074 Carboxypeptidase Taq (M32) metallopeptidase E3D14_05440 PF00106 short chain dehydrogenase E3D14_05450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_05460 PF07995 Glucose / Sorbosone dehydrogenase E3D14_05485 PF00800 Prephenate dehydratase E3D14_05485 PF01817 Chorismate mutase type II E3D14_05515 PF08349 Protein of unknown function (DUF1722) E3D14_05520 PF13411 MerR HTH family regulatory protein E3D14_05525 PF00875 DNA photolyase E3D14_05525 PF03441 FAD binding domain of DNA photolyase E3D14_05535 PF00106 short chain dehydrogenase E3D14_05575 PF00210 Ferritin-like domain E3D14_05580 PF03063 Prismane/CO dehydrogenase family E3D14_05585 PF00970 Oxidoreductase FAD-binding domain E3D14_05585 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_05585 PF00175 Oxidoreductase NAD-binding domain E3D14_05590 PF16363 GDP-mannose 4,6 dehydratase E3D14_05595 PF06965 Na+/H+ antiporter 1 E3D14_05595 PF13462 Thioredoxin E3D14_05610 PF06165 Glycosyltransferase family 36 E3D14_05610 PF10091 Putative glucoamylase E3D14_05610 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain E3D14_05615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_05615 PF03466 LysR substrate binding domain E3D14_05620 PF03306 Alpha-acetolactate decarboxylase E3D14_05630 PF01965 DJ-1/PfpI family E3D14_05635 PF08546 Ketopantoate reductase PanE/ApbA C terminal E3D14_05635 PF02558 Ketopantoate reductase PanE/ApbA E3D14_05640 PF04461 Protein of unknown function (DUF520) E3D14_05645 PF03502 Nucleoside-specific channel-forming protein, Tsx E3D14_05650 PF07690 Major Facilitator Superfamily E3D14_05660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3D14_05670 PF05175 Methyltransferase small domain E3D14_05675 PF01722 BolA-like protein E3D14_05685 PF11973 NQRA C-terminal domain E3D14_05685 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) E3D14_05690 PF03116 NQR2, RnfD, RnfE family E3D14_05695 PF04205 FMN-binding domain E3D14_05700 PF02508 Rnf-Nqr subunit, membrane protein E3D14_05705 PF02508 Rnf-Nqr subunit, membrane protein E3D14_05710 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_05710 PF00970 Oxidoreductase FAD-binding domain E3D14_05710 PF00175 Oxidoreductase NAD-binding domain E3D14_05715 PF02424 ApbE family E3D14_05730 PF11798 IMS family HHH motif E3D14_05730 PF11799 impB/mucB/samB family C-terminal domain E3D14_05730 PF00817 impB/mucB/samB family E3D14_05735 PF00672 HAMP domain E3D14_05735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_05740 PF03466 LysR substrate binding domain E3D14_05740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_05750 PF04241 Protein of unknown function (DUF423) E3D14_05755 PF01728 FtsJ-like methyltransferase E3D14_05755 PF18125 RlmM ferredoxin-like domain E3D14_05765 PF18324 Hypothetical protein TT1725 E3D14_05765 PF00180 Isocitrate/isopropylmalate dehydrogenase E3D14_05770 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain E3D14_05770 PF01367 5'-3' exonuclease, C-terminal SAM fold E3D14_05775 PF03641 Possible lysine decarboxylase E3D14_05775 PF11892 Domain of unknown function (DUF3412) E3D14_05775 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases E3D14_05780 PF07694 5TMR of 5TMR-LYT E3D14_05780 PF00990 Diguanylate cyclase, GGDEF domain E3D14_05790 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term E3D14_05790 PF14489 QueF-like protein E3D14_05795 PF07348 Syd protein (SUKH-2) E3D14_05800 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) E3D14_05825 PF04287 tRNA pseudouridine synthase C E3D14_05830 PF00849 RNA pseudouridylate synthase E3D14_05835 PF00258 Flavodoxin E3D14_05840 PF02264 LamB porin E3D14_05860 PF00367 phosphotransferase system, EIIB E3D14_05860 PF02378 Phosphotransferase system, EIIC E3D14_05865 PF11944 Protein of unknown function (DUF3461) E3D14_05870 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal E3D14_05870 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_05870 PF14602 Hexapeptide repeat of succinyl-transferase E3D14_05875 PF01909 Nucleotidyltransferase domain E3D14_05875 PF01842 ACT domain E3D14_05875 PF01966 HD domain E3D14_05875 PF08335 GlnD PII-uridylyltransferase E3D14_05880 PF00557 Metallopeptidase family M24 E3D14_05885 PF00318 Ribosomal protein S2 E3D14_05890 PF00889 Elongation factor TS E3D14_05895 PF00696 Amino acid kinase family E3D14_05900 PF01765 Ribosome recycling factor E3D14_05905 PF01255 Putative undecaprenyl diphosphate synthase E3D14_05915 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase E3D14_05915 PF13288 DXP reductoisomerase C-terminal domain E3D14_05915 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain E3D14_05920 PF17820 PDZ domain E3D14_05920 PF02163 Peptidase family M50 E3D14_05925 PF07244 Surface antigen variable number repeat E3D14_05925 PF01103 Surface antigen E3D14_05930 PF03938 Outer membrane protein (OmpH-like) E3D14_05935 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD E3D14_05935 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_05940 PF07977 FabA-like domain E3D14_05945 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 E3D14_05945 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_05950 PF02684 Lipid-A-disaccharide synthetase E3D14_05955 PF01351 Ribonuclease HII E3D14_05960 PF07733 Bacterial DNA polymerase III alpha NTPase domain E3D14_05960 PF14579 Helix-hairpin-helix motif E3D14_05960 PF02811 PHP domain E3D14_05960 PF17657 Bacterial DNA polymerase III alpha subunit finger domain E3D14_05960 PF01336 OB-fold nucleic acid binding domain E3D14_05965 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit E3D14_05970 PF00486 Transcriptional regulatory protein, C terminal E3D14_05970 PF18500 CadC C-terminal domain 1 E3D14_05975 PF13520 Amino acid permease E3D14_05980 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain E3D14_05980 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain E3D14_05980 PF01276 Orn/Lys/Arg decarboxylase, major domain E3D14_05985 PF08543 Phosphomethylpyrimidine kinase E3D14_05995 PF03466 LysR substrate binding domain E3D14_05995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_06005 PF13520 Amino acid permease E3D14_06010 PF13302 Acetyltransferase (GNAT) domain E3D14_06015 PF12848 ABC transporter E3D14_06015 PF00005 ABC transporter E3D14_06015 PF16326 ABC transporter C-terminal domain E3D14_06025 PF05649 Peptidase family M13 E3D14_06025 PF01431 Peptidase family M13 E3D14_06030 PF09179 TilS substrate binding domain E3D14_06030 PF11734 TilS substrate C-terminal domain E3D14_06030 PF01171 PP-loop family E3D14_06035 PF00990 Diguanylate cyclase, GGDEF domain E3D14_06035 PF07694 5TMR of 5TMR-LYT E3D14_06040 PF02254 TrkA-N domain E3D14_06040 PF02080 TrkA-C domain E3D14_06040 PF00999 Sodium/hydrogen exchanger family E3D14_06070 PF00196 Bacterial regulatory proteins, luxR family E3D14_06070 PF00072 Response regulator receiver domain E3D14_06090 PF01161 Phosphatidylethanolamine-binding protein E3D14_06100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_06100 PF03466 LysR substrate binding domain E3D14_06110 PF00155 Aminotransferase class I and II E3D14_06115 PF07690 Major Facilitator Superfamily E3D14_06120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_06120 PF03466 LysR substrate binding domain E3D14_06125 PF00106 short chain dehydrogenase E3D14_06130 PF01343 Peptidase family S49 E3D14_06130 PF08496 Peptidase family S49 N-terminal E3D14_06135 PF04996 Succinylarginine dihydrolase E3D14_06140 PF01396 Topoisomerase DNA binding C4 zinc finger E3D14_06140 PF01751 Toprim domain E3D14_06140 PF08272 Topoisomerase I zinc-ribbon-like E3D14_06140 PF01131 DNA topoisomerase E3D14_06150 PF08447 PAS fold E3D14_06150 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_06155 PF00728 Glycosyl hydrolase family 20, catalytic domain E3D14_06155 PF02838 Glycosyl hydrolase family 20, domain 2 E3D14_06160 PF01869 BadF/BadG/BcrA/BcrD ATPase family E3D14_06170 PF00005 ABC transporter E3D14_06170 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_06175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_06175 PF00005 ABC transporter E3D14_06180 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_06180 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_06185 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_06190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_06195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_06195 PF09308 LuxQ, periplasmic E3D14_06195 PF00512 His Kinase A (phospho-acceptor) domain E3D14_06195 PF00072 Response regulator receiver domain E3D14_06215 PF10725 Protein of unknown function (DUF2517) E3D14_06225 PF13426 PAS domain E3D14_06225 PF08447 PAS fold E3D14_06225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_06235 PF04632 Fusaric acid resistance protein family E3D14_06240 PF00994 Probable molybdopterin binding domain E3D14_06240 PF03454 MoeA C-terminal region (domain IV) E3D14_06240 PF03453 MoeA N-terminal region (domain I and II) E3D14_06245 PF12804 MobA-like NTP transferase domain E3D14_06250 PF00005 ABC transporter E3D14_06255 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_06260 PF12849 PBP superfamily domain E3D14_06270 PF00512 His Kinase A (phospho-acceptor) domain E3D14_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_06270 PF00989 PAS fold E3D14_06280 PF02634 FdhD/NarQ family E3D14_06320 PF00924 Mechanosensitive ion channel E3D14_06320 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3D14_06320 PF12795 Mechanosensitive ion channel porin domain E3D14_06325 PF02887 Pyruvate kinase, alpha/beta domain E3D14_06325 PF00224 Pyruvate kinase, barrel domain E3D14_06335 PF04151 Bacterial pre-peptidase C-terminal domain E3D14_06335 PF04389 Peptidase family M28 E3D14_06340 PF00999 Sodium/hydrogen exchanger family E3D14_06340 PF02254 TrkA-N domain E3D14_06345 PF00999 Sodium/hydrogen exchanger family E3D14_06345 PF02254 TrkA-N domain E3D14_06355 PF04381 Putative exonuclease, RdgC E3D14_06365 PF00149 Calcineurin-like phosphoesterase E3D14_06365 PF12320 Type 5 capsule protein repressor C-terminal domain E3D14_06370 PF13476 AAA domain E3D14_06380 PF01292 Prokaryotic cytochrome b561 E3D14_06390 PF00990 Diguanylate cyclase, GGDEF domain E3D14_06390 PF08448 PAS fold E3D14_06395 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3D14_06400 PF05524 PEP-utilising enzyme, N-terminal E3D14_06400 PF00391 PEP-utilising enzyme, mobile domain E3D14_06400 PF02896 PEP-utilising enzyme, TIM barrel domain E3D14_06405 PF00381 PTS HPr component phosphorylation site E3D14_06410 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_06425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3D14_06425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3D14_06430 PF18389 TrmO C-terminal domain E3D14_06430 PF01980 tRNA-methyltransferase O E3D14_06450 PF00005 ABC transporter E3D14_06450 PF00664 ABC transporter transmembrane region E3D14_06455 PF00664 ABC transporter transmembrane region E3D14_06455 PF00005 ABC transporter E3D14_06470 PF00072 Response regulator receiver domain E3D14_06470 PF00486 Transcriptional regulatory protein, C terminal E3D14_06480 PF03737 Aldolase/RraA E3D14_06495 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) E3D14_06500 PF00588 SpoU rRNA Methylase family E3D14_06510 PF03447 Homoserine dehydrogenase, NAD binding domain E3D14_06510 PF00742 Homoserine dehydrogenase E3D14_06510 PF00696 Amino acid kinase family E3D14_06510 PF13840 ACT domain E3D14_06510 PF01842 ACT domain E3D14_06515 PF08544 GHMP kinases C terminal E3D14_06515 PF00288 GHMP kinases N terminal domain E3D14_06520 PF14821 Threonine synthase N terminus E3D14_06520 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_06550 PF01797 Transposase IS200 like E3D14_06570 PF01048 Phosphorylase superfamily E3D14_06585 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase E3D14_06590 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_06590 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3D14_06595 PF02690 Na+/Pi-cotransporter E3D14_06600 PF00324 Amino acid permease E3D14_06605 PF00324 Amino acid permease E3D14_06610 PF00202 Aminotransferase class-III E3D14_06615 PF00171 Aldehyde dehydrogenase family E3D14_06620 PF07883 Cupin domain E3D14_06620 PF01381 Helix-turn-helix E3D14_06625 PF01266 FAD dependent oxidoreductase E3D14_06635 PF07883 Cupin domain E3D14_06635 PF12833 Helix-turn-helix domain E3D14_06660 PF00816 H-NS histone family E3D14_06665 PF00872 Transposase, Mutator family E3D14_06675 PF00793 DAHP synthetase I family E3D14_06680 PF08021 Siderophore-interacting FAD-binding domain E3D14_06680 PF04954 Siderophore-interacting protein E3D14_06685 PF02321 Outer membrane efflux protein E3D14_06690 PF00005 ABC transporter E3D14_06690 PF02687 FtsX-like permease family E3D14_06690 PF12704 MacB-like periplasmic core domain E3D14_06695 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_06705 PF02833 DHHA2 domain E3D14_06705 PF01368 DHH family E3D14_06710 PF02463 RecF/RecN/SMC N terminal domain E3D14_06715 PF01513 ATP-NAD kinase E3D14_06720 PF01025 GrpE E3D14_06725 PF00012 Hsp70 protein E3D14_06730 PF00226 DnaJ domain E3D14_06730 PF00684 DnaJ central domain E3D14_06730 PF01556 DnaJ C terminal domain E3D14_06735 PF11471 Maltoporin periplasmic N-terminal extension E3D14_06735 PF02264 LamB porin E3D14_06740 PF00294 pfkB family carbohydrate kinase E3D14_06745 PF02378 Phosphotransferase system, EIIC E3D14_06745 PF00367 phosphotransferase system, EIIB E3D14_06755 PF00356 Bacterial regulatory proteins, lacI family E3D14_06755 PF13407 Periplasmic binding protein domain E3D14_06760 PF02308 MgtC family E3D14_06785 PF04143 Sulphur transport E3D14_06800 PF00873 AcrB/AcrD/AcrF family E3D14_06805 PF03707 Bacterial signalling protein N terminal repeat E3D14_06805 PF00563 EAL domain E3D14_06805 PF00990 Diguanylate cyclase, GGDEF domain E3D14_06810 PF10437 Bacterial lipoate protein ligase C-terminus E3D14_06810 PF03099 Biotin/lipoate A/B protein ligase family E3D14_06820 PF00873 AcrB/AcrD/AcrF family E3D14_06825 PF00529 HlyD membrane-fusion protein of T1SS E3D14_06825 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_06840 PF00873 AcrB/AcrD/AcrF family E3D14_06845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_06850 PF03372 Endonuclease/Exonuclease/phosphatase family E3D14_06865 PF02424 ApbE family E3D14_06870 PF00127 Copper binding proteins, plastocyanin/azurin family E3D14_06885 PF01156 Inosine-uridine preferring nucleoside hydrolase E3D14_06895 PF00034 Cytochrome c E3D14_06895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D14_06905 PF00116 Cytochrome C oxidase subunit II, periplasmic domain E3D14_06905 PF06481 COX Aromatic Rich Motif E3D14_06910 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3D14_06915 PF00510 Cytochrome c oxidase subunit III E3D14_06920 PF03626 Prokaryotic Cytochrome C oxidase subunit IV E3D14_06925 PF01040 UbiA prenyltransferase family E3D14_06930 PF07690 Major Facilitator Superfamily E3D14_06935 PF00561 alpha/beta hydrolase fold E3D14_06950 PF00356 Bacterial regulatory proteins, lacI family E3D14_06950 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3D14_06955 PF00367 phosphotransferase system, EIIB E3D14_06955 PF02378 Phosphotransferase system, EIIC E3D14_06960 PF00155 Aminotransferase class I and II E3D14_06985 PF01238 Phosphomannose isomerase type I E3D14_06990 PF12833 Helix-turn-helix domain E3D14_06995 PF00180 Isocitrate/isopropylmalate dehydrogenase E3D14_07005 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_07010 PF02447 GntP family permease E3D14_07015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_07015 PF03466 LysR substrate binding domain E3D14_07100 PF01668 SmpB protein E3D14_07105 PF03364 Polyketide cyclase / dehydrase and lipid transport E3D14_07115 PF13460 NAD(P)H-binding E3D14_07120 PF04355 SmpA / OmlA family E3D14_07150 PF13629 Pilus formation protein N terminal region E3D14_07150 PF00263 Bacterial type II and III secretion system protein E3D14_07150 PF04972 BON domain E3D14_07160 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3D14_07165 PF00437 Type II/IV secretion system protein E3D14_07200 PF00465 Iron-containing alcohol dehydrogenase E3D14_07205 PF01048 Phosphorylase superfamily E3D14_07210 PF00849 RNA pseudouridylate synthase E3D14_07215 PF01156 Inosine-uridine preferring nucleoside hydrolase E3D14_07230 PF07509 Protein of unknown function (DUF1523) E3D14_07235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_07235 PF00672 HAMP domain E3D14_07235 PF12729 Four helix bundle sensory module for signal transduction E3D14_07240 PF01810 LysE type translocator E3D14_07250 PF02080 TrkA-C domain E3D14_07250 PF03471 Transporter associated domain E3D14_07250 PF00999 Sodium/hydrogen exchanger family E3D14_07260 PF03471 Transporter associated domain E3D14_07260 PF00999 Sodium/hydrogen exchanger family E3D14_07260 PF02080 TrkA-C domain E3D14_07270 PF02557 D-alanyl-D-alanine carboxypeptidase E3D14_07275 PF01546 Peptidase family M20/M25/M40 E3D14_07275 PF07687 Peptidase dimerisation domain E3D14_07280 PF03960 ArsC family E3D14_07285 PF03466 LysR substrate binding domain E3D14_07285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_07300 PF03605 Anaerobic c4-dicarboxylate membrane transporter E3D14_07305 PF00152 tRNA synthetases class II (D, K and N) E3D14_07305 PF01336 OB-fold nucleic acid binding domain E3D14_07320 PF00202 Aminotransferase class-III E3D14_07325 PF04055 Radical SAM superfamily E3D14_07325 PF06968 Biotin and Thiamin Synthesis associated domain E3D14_07330 PF00155 Aminotransferase class I and II E3D14_07335 PF12697 Alpha/beta hydrolase family E3D14_07335 PF08241 Methyltransferase domain E3D14_07345 PF01435 Peptidase family M48 E3D14_07350 PF13426 PAS domain E3D14_07350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_07350 PF08447 PAS fold E3D14_07355 PF03473 MOSC domain E3D14_07355 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_07355 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_07355 PF03476 MOSC N-terminal beta barrel domain E3D14_07355 PF03473 MOSC domain E3D14_07355 PF03476 MOSC N-terminal beta barrel domain E3D14_07370 PF04325 Protein of unknown function (DUF465) E3D14_07380 PF01554 MatE E3D14_07385 PF01740 STAS domain E3D14_07385 PF00916 Sulfate permease family E3D14_07400 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_07410 PF00465 Iron-containing alcohol dehydrogenase E3D14_07420 PF00440 Bacterial regulatory proteins, tetR family E3D14_07420 PF17932 Tetracyclin repressor-like, C-terminal domain E3D14_07425 PF00171 Aldehyde dehydrogenase family E3D14_07435 PF00877 NlpC/P60 family E3D14_07440 PF07968 Leukocidin/Hemolysin toxin family E3D14_07440 PF12563 Hemolytic toxin N terminal E3D14_07445 PF03466 LysR substrate binding domain E3D14_07445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_07455 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3D14_07455 PF00578 AhpC/TSA family E3D14_07475 PF08003 Protein of unknown function (DUF1698) E3D14_07480 PF13649 Methyltransferase domain E3D14_07490 PF02938 GAD domain E3D14_07490 PF01336 OB-fold nucleic acid binding domain E3D14_07490 PF00152 tRNA synthetases class II (D, K and N) E3D14_07495 PF01709 Transcriptional regulator E3D14_07500 PF08019 Phosphoethanolamine transferase EptA/EptB E3D14_07500 PF00884 Sulfatase E3D14_07505 PF02838 Glycosyl hydrolase family 20, domain 2 E3D14_07505 PF00728 Glycosyl hydrolase family 20, catalytic domain E3D14_07505 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain E3D14_07505 PF03173 Putative carbohydrate binding domain E3D14_07515 PF00501 AMP-binding enzyme E3D14_07515 PF13193 AMP-binding enzyme C-terminal domain E3D14_07515 PF00668 Condensation domain E3D14_07515 PF00550 Phosphopantetheine attachment site E3D14_07515 PF00975 Thioesterase domain E3D14_07525 PF00665 Integrase core domain E3D14_07530 PF01695 IstB-like ATP binding protein E3D14_07545 PF00698 Acyl transferase domain E3D14_07545 PF00550 Phosphopantetheine attachment site E3D14_07545 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_07545 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_07545 PF16197 Ketoacyl-synthetase C-terminal extension E3D14_07545 PF00668 Condensation domain E3D14_07555 PF00550 Phosphopantetheine attachment site E3D14_07555 PF00698 Acyl transferase domain E3D14_07555 PF08240 Alcohol dehydrogenase GroES-like domain E3D14_07555 PF14765 Polyketide synthase dehydratase E3D14_07555 PF16197 Ketoacyl-synthetase C-terminal extension E3D14_07555 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_07555 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_07555 PF08659 KR domain E3D14_07560 PF00550 Phosphopantetheine attachment site E3D14_07560 PF00501 AMP-binding enzyme E3D14_07560 PF13193 AMP-binding enzyme C-terminal domain E3D14_07560 PF00668 Condensation domain E3D14_07570 PF13439 Glycosyltransferase Family 4 E3D14_07570 PF00534 Glycosyl transferases group 1 E3D14_07580 PF01648 4'-phosphopantetheinyl transferase superfamily E3D14_07580 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E3D14_07600 PF01047 MarR family E3D14_07600 PF00480 ROK family E3D14_07605 PF01979 Amidohydrolase family E3D14_07610 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase E3D14_07615 PF02378 Phosphotransferase system, EIIC E3D14_07615 PF00367 phosphotransferase system, EIIB E3D14_07615 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3D14_07620 PF03173 Putative carbohydrate binding domain E3D14_07620 PF00728 Glycosyl hydrolase family 20, catalytic domain E3D14_07620 PF02838 Glycosyl hydrolase family 20, domain 2 E3D14_07620 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain E3D14_07625 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain E3D14_07625 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3D14_07630 PF01475 Ferric uptake regulator family E3D14_07640 PF00258 Flavodoxin E3D14_07645 PF01402 Ribbon-helix-helix protein, copG family E3D14_07655 PF12697 Alpha/beta hydrolase family E3D14_07660 PF03925 SeqA protein C-terminal domain E3D14_07660 PF17206 SeqA protein N-terminal domain E3D14_07665 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3D14_07665 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3D14_07665 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3D14_07665 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3D14_07675 PF01047 MarR family E3D14_07680 PF13406 Transglycosylase SLT domain E3D14_07685 PF01066 CDP-alcohol phosphatidyltransferase E3D14_07690 PF00005 ABC transporter E3D14_07695 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_07700 PF13416 Bacterial extracellular solute-binding protein E3D14_07705 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_07705 PF00403 Heavy-metal-associated domain E3D14_07705 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D14_07710 PF02627 Carboxymuconolactone decarboxylase family E3D14_07720 PF01625 Peptide methionine sulfoxide reductase E3D14_07740 PF17243 POTRA domain TamA domain 1 E3D14_07740 PF07244 Surface antigen variable number repeat E3D14_07740 PF01103 Surface antigen E3D14_07745 PF04357 TamB, inner membrane protein subunit of TAM complex E3D14_07760 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3D14_07765 PF00990 Diguanylate cyclase, GGDEF domain E3D14_07765 PF03707 Bacterial signalling protein N terminal repeat E3D14_07765 PF00563 EAL domain E3D14_07770 PF01464 Transglycosylase SLT domain E3D14_07770 PF14718 Soluble lytic murein transglycosylase L domain E3D14_07775 PF00356 Bacterial regulatory proteins, lacI family E3D14_07785 PF03061 Thioesterase superfamily E3D14_07795 PF03372 Endonuclease/Exonuclease/phosphatase family E3D14_07800 PF01464 Transglycosylase SLT domain E3D14_07800 PF01476 LysM domain E3D14_07805 PF00753 Metallo-beta-lactamase superfamily E3D14_07805 PF16123 Hydroxyacylglutathione hydrolase C-terminus E3D14_07810 PF08241 Methyltransferase domain E3D14_07815 PF00075 RNase H E3D14_07820 PF00929 Exonuclease E3D14_07830 PF11849 Domain of unknown function (DUF3369) E3D14_07835 PF02770 Acyl-CoA dehydrogenase, middle domain E3D14_07835 PF09317 Domain of unknown function (DUF1974) E3D14_07835 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3D14_07835 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3D14_07840 PF13580 SIS domain E3D14_07845 PF13230 Glutamine amidotransferases class-II E3D14_07855 PF01933 Uncharacterised protein family UPF0052 E3D14_07865 PF09456 RcsC Alpha-Beta-Loop (ABL) E3D14_07865 PF00512 His Kinase A (phospho-acceptor) domain E3D14_07865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_07865 PF00072 Response regulator receiver domain E3D14_07875 PF00196 Bacterial regulatory proteins, luxR family E3D14_07875 PF00072 Response regulator receiver domain E3D14_07880 PF07730 Histidine kinase E3D14_07880 PF00672 HAMP domain E3D14_07880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_07880 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term E3D14_07885 PF06463 Molybdenum Cofactor Synthesis C E3D14_07885 PF04055 Radical SAM superfamily E3D14_07890 PF13187 4Fe-4S dicluster domain E3D14_07890 PF12838 4Fe-4S dicluster domain E3D14_07900 PF10518 TAT (twin-arginine translocation) pathway signal sequence E3D14_07900 PF01568 Molydopterin dinucleotide binding domain E3D14_07900 PF00384 Molybdopterin oxidoreductase E3D14_07900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3D14_07905 PF12800 4Fe-4S binding domain E3D14_07905 PF12838 4Fe-4S dicluster domain E3D14_07910 PF12801 4Fe-4S binding domain E3D14_07910 PF13237 4Fe-4S dicluster domain E3D14_07915 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) E3D14_07920 PF03264 NapC/NirT cytochrome c family, N-terminal region E3D14_07925 PF00994 Probable molybdopterin binding domain E3D14_07930 PF01967 MoaC family E3D14_07935 PF02597 ThiS family E3D14_07940 PF02391 MoaE protein E3D14_07950 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_07955 PF00005 ABC transporter E3D14_07955 PF03459 TOBE domain E3D14_07965 PF06406 StbA protein E3D14_07975 PF06291 Bor protein E3D14_07980 PF06291 Bor protein E3D14_07985 PF00899 ThiF family E3D14_07990 PF03454 MoeA C-terminal region (domain IV) E3D14_07990 PF00994 Probable molybdopterin binding domain E3D14_07990 PF03453 MoeA N-terminal region (domain I and II) E3D14_07995 PF01227 GTP cyclohydrolase I E3D14_08000 PF17200 Single Cache domain 2 E3D14_08000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_08000 PF00672 HAMP domain E3D14_08005 PF01268 Formate--tetrahydrofolate ligase E3D14_08015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_08015 PF03466 LysR substrate binding domain E3D14_08020 PF04264 YceI-like domain E3D14_08045 PF01546 Peptidase family M20/M25/M40 E3D14_08045 PF07687 Peptidase dimerisation domain E3D14_08055 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3D14_08055 PF17944 Arginine decarboxylase C-terminal helical extension E3D14_08055 PF17810 Arginine decarboxylase helical bundle domain E3D14_08070 PF00300 Histidine phosphatase superfamily (branch 1) E3D14_08085 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_08095 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase E3D14_08095 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain E3D14_08100 PF01479 S4 domain E3D14_08100 PF00849 RNA pseudouridylate synthase E3D14_08105 PF07690 Major Facilitator Superfamily E3D14_08115 PF03466 LysR substrate binding domain E3D14_08115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_08125 PF10689 Protein of unknown function (DUF2496) E3D14_08135 PF04391 Protein of unknown function (DUF533) E3D14_08140 PF00155 Aminotransferase class I and II E3D14_08140 PF00392 Bacterial regulatory proteins, gntR family E3D14_08145 PF01654 Cytochrome bd terminal oxidase subunit I E3D14_08150 PF02322 Cytochrome bd terminal oxidase subunit II E3D14_08160 PF07690 Major Facilitator Superfamily E3D14_08165 PF00248 Aldo/keto reductase family E3D14_08170 PF03992 Antibiotic biosynthesis monooxygenase E3D14_08195 PF03466 LysR substrate binding domain E3D14_08195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_08200 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3D14_08200 PF00370 FGGY family of carbohydrate kinases, N-terminal domain E3D14_08205 PF00230 Major intrinsic protein E3D14_08210 PF07690 Major Facilitator Superfamily E3D14_08215 PF00455 DeoR C terminal sensor domain E3D14_08215 PF08220 DeoR-like helix-turn-helix domain E3D14_08225 PF01266 FAD dependent oxidoreductase E3D14_08225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase E3D14_08230 PF03009 Glycerophosphoryl diester phosphodiesterase family E3D14_08235 PF00793 DAHP synthetase I family E3D14_08240 PF02153 Prephenate dehydrogenase E3D14_08240 PF01817 Chorismate mutase type II E3D14_08245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_08245 PF03466 LysR substrate binding domain E3D14_08250 PF04219 Protein of unknown function, DUF E3D14_08255 PF03974 Ecotin E3D14_08275 PF00326 Prolyl oligopeptidase family E3D14_08275 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain E3D14_08280 PF07715 TonB-dependent Receptor Plug Domain E3D14_08280 PF00593 TonB dependent receptor E3D14_08285 PF00884 Sulfatase E3D14_08285 PF11893 Domain of unknown function (DUF3413) E3D14_08290 PF07208 Protein of unknown function (DUF1414) E3D14_08295 PF04245 37-kD nucleoid-associated bacterial protein E3D14_08300 PF01547 Bacterial extracellular solute-binding protein E3D14_08305 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08305 PF14785 Maltose transport system permease protein MalF P2 domain E3D14_08310 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08315 PF08402 TOBE domain E3D14_08315 PF00005 ABC transporter E3D14_08320 PF03976 Polyphosphate kinase 2 (PPK2) E3D14_08325 PF00561 alpha/beta hydrolase fold E3D14_08330 PF01594 AI-2E family transporter E3D14_08335 PF01206 Sulfurtransferase TusA E3D14_08340 PF07720 Tetratricopeptide repeat E3D14_08340 PF01435 Peptidase family M48 E3D14_08350 PF03960 ArsC family E3D14_08360 PF04336 Acyl carrier protein phosphodiesterase E3D14_08365 PF03956 Lysine exporter LysO E3D14_08370 PF00005 ABC transporter E3D14_08375 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_08380 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08385 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08400 PF04055 Radical SAM superfamily E3D14_08405 PF00563 EAL domain E3D14_08405 PF00990 Diguanylate cyclase, GGDEF domain E3D14_08405 PF03707 Bacterial signalling protein N terminal repeat E3D14_08415 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain E3D14_08415 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain E3D14_08415 PF11974 Bacterial alpha-2-macroglobulin MG3 domain E3D14_08415 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain E3D14_08415 PF17962 Bacterial macroglobulin domain 6 E3D14_08415 PF01835 MG2 domain E3D14_08415 PF07678 A-macroglobulin TED domain E3D14_08415 PF07703 Alpha-2-macroglobulin bait region domain E3D14_08415 PF00207 Alpha-2-macroglobulin family E3D14_08420 PF00912 Transglycosylase E3D14_08420 PF00905 Penicillin binding protein transpeptidase domain E3D14_08420 PF06832 Penicillin-Binding Protein C-terminus Family E3D14_08430 PF12167 Arm DNA-binding domain E3D14_08430 PF00589 Phage integrase family E3D14_08480 PF04381 Putative exonuclease, RdgC E3D14_08515 PF12684 PDDEXK-like domain of unknown function (DUF3799) E3D14_08515 PF06630 Enterobacterial exodeoxyribonuclease VIII E3D14_08585 PF00145 C-5 cytosine-specific DNA methylase E3D14_08615 PF05772 NinB protein E3D14_08775 PF02926 THUMP domain E3D14_08775 PF02568 Thiamine biosynthesis protein (ThiI) E3D14_08785 PF03458 UPF0126 domain E3D14_08790 PF00669 Bacterial flagellin N-terminal helical region E3D14_08790 PF07196 Flagellin hook IN motif E3D14_08790 PF00700 Bacterial flagellin C-terminal helical region E3D14_08795 PF00700 Bacterial flagellin C-terminal helical region E3D14_08795 PF00669 Bacterial flagellin N-terminal helical region E3D14_08805 PF02465 Flagellar hook-associated protein 2 N-terminus E3D14_08805 PF07195 Flagellar hook-associated protein 2 C-terminus E3D14_08805 PF07196 Flagellin hook IN motif E3D14_08810 PF02561 Flagellar protein FliS E3D14_08825 PF01497 Periplasmic binding protein E3D14_08835 PF01048 Phosphorylase superfamily E3D14_08845 PF02535 ZIP Zinc transporter E3D14_08850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_08850 PF00672 HAMP domain E3D14_08855 PF00459 Inositol monophosphatase family E3D14_08865 PF02798 Glutathione S-transferase, N-terminal domain E3D14_08865 PF00043 Glutathione S-transferase, C-terminal domain E3D14_08875 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08880 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_08880 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_08885 PF00005 ABC transporter E3D14_08890 PF07690 Major Facilitator Superfamily E3D14_08895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_08895 PF03466 LysR substrate binding domain E3D14_08900 PF02634 FdhD/NarQ family E3D14_08915 PF05164 Cell division protein ZapA E3D14_08920 PF03695 Uncharacterised protein family (UPF0149) E3D14_08925 PF01494 FAD binding domain E3D14_08930 PF01494 FAD binding domain E3D14_08935 PF08669 Glycine cleavage T-protein C-terminal barrel domain E3D14_08935 PF01571 Aminomethyltransferase folate-binding domain E3D14_08940 PF01597 Glycine cleavage H-protein E3D14_08945 PF02347 Glycine cleavage system P-protein E3D14_08955 PF07690 Major Facilitator Superfamily E3D14_08960 PF13192 Thioredoxin domain E3D14_08960 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_08965 PF10417 C-terminal domain of 1-Cys peroxiredoxin E3D14_08965 PF00578 AhpC/TSA family E3D14_08970 PF00571 CBS domain E3D14_08975 PF02547 Queuosine biosynthesis protein E3D14_08980 PF01702 Queuine tRNA-ribosyltransferase E3D14_08985 PF02699 Preprotein translocase subunit E3D14_08990 PF02355 Protein export membrane protein E3D14_08990 PF07549 SecD/SecF GG Motif E3D14_08990 PF13721 SecD export protein N-terminal TM region E3D14_08995 PF07549 SecD/SecF GG Motif E3D14_08995 PF02355 Protein export membrane protein E3D14_09000 PF00581 Rhodanese-like domain E3D14_09005 PF07719 Tetratricopeptide repeat E3D14_09005 PF13181 Tetratricopeptide repeat E3D14_09030 PF00588 SpoU rRNA Methylase family E3D14_09035 PF02082 Transcriptional regulator E3D14_09040 PF00266 Aminotransferase class-V E3D14_09045 PF01592 NifU-like N terminal domain E3D14_09050 PF01521 Iron-sulphur cluster biosynthesis E3D14_09055 PF07743 HSCB C-terminal oligomerisation domain E3D14_09055 PF00226 DnaJ domain E3D14_09060 PF00012 Hsp70 protein E3D14_09065 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_09070 PF00883 Cytosol aminopeptidase family, catalytic domain E3D14_09070 PF12404 Peptidase E3D14_09075 PF12404 Peptidase E3D14_09075 PF00883 Cytosol aminopeptidase family, catalytic domain E3D14_09080 PF00334 Nucleoside diphosphate kinase E3D14_09085 PF04055 Radical SAM superfamily E3D14_09095 PF13464 Domain of unknown function (DUF4115) E3D14_09100 PF04551 GcpE protein E3D14_09105 PF13393 Histidyl-tRNA synthetase E3D14_09105 PF03129 Anticodon binding domain E3D14_09110 PF09976 Tetratricopeptide repeat-like domain E3D14_09115 PF13360 PQQ-like domain E3D14_09120 PF01926 50S ribosome-binding GTPase E3D14_09120 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal E3D14_09125 PF07191 zinc-ribbons E3D14_09130 PF01464 Transglycosylase SLT domain E3D14_09130 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_09135 PF02769 AIR synthase related protein, C-terminal domain E3D14_09135 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain E3D14_09135 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal E3D14_09145 PF05661 Protein of unknown function (DUF808) E3D14_09155 PF08439 Oligopeptidase F E3D14_09155 PF01432 Peptidase family M3 E3D14_09160 PF05728 Uncharacterised protein family (UPF0227) E3D14_09165 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_09170 PF01906 Putative heavy-metal-binding E3D14_09180 PF17676 LD-carboxypeptidase C-terminal domain E3D14_09180 PF02016 LD-carboxypeptidase N-terminal domain E3D14_09185 PF00884 Sulfatase E3D14_09195 PF00696 Amino acid kinase family E3D14_09195 PF01842 ACT domain E3D14_09200 PF00583 Acetyltransferase (GNAT) family E3D14_09200 PF00696 Amino acid kinase family E3D14_09205 PF01625 Peptide methionine sulfoxide reductase E3D14_09250 PF02308 MgtC family E3D14_09280 PF03600 Citrate transporter E3D14_09305 PF01593 Flavin containing amine oxidoreductase E3D14_09310 PF03239 Iron permease FTR1 family E3D14_09340 PF00324 Amino acid permease E3D14_09350 PF03618 Kinase/pyrophosphorylase E3D14_09355 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain E3D14_09355 PF00391 PEP-utilising enzyme, mobile domain E3D14_09355 PF02896 PEP-utilising enzyme, TIM barrel domain E3D14_09365 PF01915 Glycosyl hydrolase family 3 C-terminal domain E3D14_09365 PF00933 Glycosyl hydrolase family 3 N terminal domain E3D14_09365 PF14310 Fibronectin type III-like domain E3D14_09375 PF01483 Proprotein convertase P-domain E3D14_09375 PF00082 Subtilase family E3D14_09395 PF03180 NLPA lipoprotein E3D14_09400 PF01569 PAP2 superfamily E3D14_09405 PF11890 Domain of unknown function (DUF3410) E3D14_09405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_09405 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D14_09410 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3D14_09410 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3D14_09420 PF01416 tRNA pseudouridine synthase E3D14_09425 PF17848 Acetyl-coA carboxylase zinc finger domain E3D14_09425 PF01039 Carboxyl transferase domain E3D14_09430 PF02875 Mur ligase family, glutamate ligase domain E3D14_09430 PF08245 Mur ligase middle domain E3D14_09435 PF05036 Sporulation related domain E3D14_09440 PF04358 DsrC like protein E3D14_09445 PF12805 FUSC-like inner membrane protein yccS E3D14_09450 PF01027 Inhibitor of apoptosis-promoting Bax1 E3D14_09460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_09460 PF08447 PAS fold E3D14_09470 PF00849 RNA pseudouridylate synthase E3D14_09480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_09495 PF14497 Glutathione S-transferase, C-terminal domain E3D14_09495 PF02798 Glutathione S-transferase, N-terminal domain E3D14_09500 PF13417 Glutathione S-transferase, N-terminal domain E3D14_09500 PF00043 Glutathione S-transferase, C-terminal domain E3D14_09515 PF03577 Peptidase family C69 E3D14_09520 PF00733 Asparagine synthase E3D14_09520 PF13537 Glutamine amidotransferase domain E3D14_09530 PF00999 Sodium/hydrogen exchanger family E3D14_09530 PF02254 TrkA-N domain E3D14_09535 PF13344 Haloacid dehalogenase-like hydrolase E3D14_09540 PF00962 Adenosine/AMP deaminase E3D14_09545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3D14_09550 PF03471 Transporter associated domain E3D14_09550 PF03741 Integral membrane protein TerC family E3D14_09560 PF01565 FAD binding domain E3D14_09560 PF02913 FAD linked oxidases, C-terminal domain E3D14_09560 PF13183 4Fe-4S dicluster domain E3D14_09570 PF03061 Thioesterase superfamily E3D14_09575 PF00271 Helicase conserved C-terminal domain E3D14_09575 PF03880 DbpA RNA binding domain E3D14_09575 PF00270 DEAD/DEAH box helicase E3D14_09585 PF03707 Bacterial signalling protein N terminal repeat E3D14_09585 PF13188 PAS domain E3D14_09585 PF00563 EAL domain E3D14_09585 PF00990 Diguanylate cyclase, GGDEF domain E3D14_09590 PF03553 Na+/H+ antiporter family E3D14_09590 PF13726 Na+-H+ antiporter family E3D14_09595 PF00929 Exonuclease E3D14_09600 PF12729 Four helix bundle sensory module for signal transduction E3D14_09600 PF00672 HAMP domain E3D14_09600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_09605 PF18393 MotY N-terminal domain E3D14_09605 PF00691 OmpA family E3D14_09610 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_09615 PF00633 Helix-hairpin-helix motif E3D14_09615 PF10576 Iron-sulfur binding domain of endonuclease III E3D14_09615 PF00730 HhH-GPD superfamily base excision DNA repair protein E3D14_09620 PF02508 Rnf-Nqr subunit, membrane protein E3D14_09625 PF04205 FMN-binding domain E3D14_09630 PF03116 NQR2, RnfD, RnfE family E3D14_09635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3D14_09635 PF12838 4Fe-4S dicluster domain E3D14_09635 PF13375 RnfC Barrel sandwich hybrid domain E3D14_09635 PF10531 SLBB domain E3D14_09640 PF04060 Putative Fe-S cluster E3D14_09645 PF02508 Rnf-Nqr subunit, membrane protein E3D14_09650 PF00892 EamA-like transporter family E3D14_09690 PF00916 Sulfate permease family E3D14_09690 PF01740 STAS domain E3D14_09760 PF07724 AAA domain (Cdc48 subfamily) E3D14_09760 PF17871 AAA lid domain E3D14_09760 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_09760 PF10431 C-terminal, D2-small domain, of ClpB protein E3D14_09765 PF06505 Activator of aromatic catabolism E3D14_09765 PF02830 V4R domain E3D14_09765 PF02954 Bacterial regulatory protein, Fis family E3D14_09765 PF00158 Sigma-54 interaction domain E3D14_09825 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain E3D14_09825 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain E3D14_09830 PF00313 'Cold-shock' DNA-binding domain E3D14_09835 PF02617 ATP-dependent Clp protease adaptor protein ClpS E3D14_09840 PF17871 AAA lid domain E3D14_09840 PF07724 AAA domain (Cdc48 subfamily) E3D14_09840 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_09840 PF02861 Clp amino terminal domain, pathogenicity island component E3D14_09840 PF10431 C-terminal, D2-small domain, of ClpB protein E3D14_09845 PF01176 Translation initiation factor 1A / IF-1 E3D14_09850 PF04377 Arginine-tRNA-protein transferase, C terminus E3D14_09850 PF04376 Arginine-tRNA-protein transferase, N terminus E3D14_09855 PF03588 Leucyl/phenylalanyl-tRNA protein transferase E3D14_09860 PF05433 Glycine zipper 2TM domain E3D14_09865 PF00990 Diguanylate cyclase, GGDEF domain E3D14_09865 PF17158 Membrane-associated sensor, integral membrane domain E3D14_09870 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_09885 PF01037 Lrp/AsnC ligand binding domain E3D14_09890 PF01580 FtsK/SpoIIIE family E3D14_09890 PF09397 Ftsk gamma domain E3D14_09890 PF17854 FtsK alpha domain E3D14_09890 PF13491 4TM region of DNA translocase FtsK/SpoIIIE E3D14_09895 PF03548 Outer membrane lipoprotein carrier protein LolA E3D14_09900 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_09900 PF16193 AAA C-terminal domain E3D14_09900 PF12002 MgsA AAA+ ATPase C terminal E3D14_09905 PF02403 Seryl-tRNA synthetase N-terminal domain E3D14_09905 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D14_09910 PF02674 Colicin V production protein E3D14_09915 PF00156 Phosphoribosyl transferase domain E3D14_09925 PF00005 ABC transporter E3D14_09930 PF00005 ABC transporter E3D14_09930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_09935 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_09935 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_09940 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_09945 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_09950 PF00158 Sigma-54 interaction domain E3D14_09950 PF02954 Bacterial regulatory protein, Fis family E3D14_09955 PF04012 PspA/IM30 family E3D14_09960 PF06667 Phage shock protein B E3D14_09970 PF04317 YcjX-like family, DUF463 E3D14_09975 PF05128 Domain of unknown function (DUF697) E3D14_09980 PF00351 Biopterin-dependent aromatic amino acid hydroxylase E3D14_09985 PF01329 Pterin 4 alpha carbinolamine dehydratase E3D14_09990 PF00158 Sigma-54 interaction domain E3D14_09990 PF18024 Helix-turn-helix domain E3D14_09995 PF13689 YfiR/HmsC-like E3D14_10000 PF17152 Periplasmic sensor domain E3D14_10000 PF00990 Diguanylate cyclase, GGDEF domain E3D14_10005 PF00691 OmpA family E3D14_10010 PF03741 Integral membrane protein TerC family E3D14_10020 PF08891 YfcL protein E3D14_10025 PF00501 AMP-binding enzyme E3D14_10030 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region E3D14_10030 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3D14_10035 PF04172 LrgB-like family E3D14_10040 PF03788 LrgA family E3D14_10055 PF08411 Exonuclease C-terminal E3D14_10055 PF00929 Exonuclease E3D14_10065 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_10070 PF00795 Carbon-nitrogen hydrolase E3D14_10080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_10080 PF03466 LysR substrate binding domain E3D14_10085 PF11762 L-arabinose isomerase C-terminal domain E3D14_10085 PF02610 L-arabinose isomerase E3D14_10090 PF00596 Class II Aldolase and Adducin N-terminal domain E3D14_10095 PF02782 FGGY family of carbohydrate kinases, C-terminal domain E3D14_10100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3D14_10105 PF00005 ABC transporter E3D14_10110 PF02653 Branched-chain amino acid transport system / permease component E3D14_10115 PF02311 AraC-like ligand binding domain E3D14_10115 PF12833 Helix-turn-helix domain E3D14_10120 PF08544 GHMP kinases C terminal E3D14_10120 PF10509 Galactokinase galactose-binding signature E3D14_10120 PF00288 GHMP kinases N terminal domain E3D14_10125 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E3D14_10125 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E3D14_10130 PF16363 GDP-mannose 4,6 dehydratase E3D14_10135 PF00356 Bacterial regulatory proteins, lacI family E3D14_10140 PF02264 LamB porin E3D14_10145 PF07745 Glycosyl hydrolase family 53 E3D14_10150 PF07745 Glycosyl hydrolase family 53 E3D14_10160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_10160 PF12729 Four helix bundle sensory module for signal transduction E3D14_10160 PF00672 HAMP domain E3D14_10180 PF13416 Bacterial extracellular solute-binding protein E3D14_10185 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_10190 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_10195 PF07745 Glycosyl hydrolase family 53 E3D14_10200 PF08532 Beta-galactosidase trimerisation domain E3D14_10200 PF02449 Beta-galactosidase E3D14_10200 PF08533 Beta-galactosidase C-terminal domain E3D14_10205 PF02378 Phosphotransferase system, EIIC E3D14_10205 PF00367 phosphotransferase system, EIIB E3D14_10210 PF02887 Pyruvate kinase, alpha/beta domain E3D14_10210 PF00224 Pyruvate kinase, barrel domain E3D14_10215 PF00444 Ribosomal protein L36 E3D14_10220 PF01197 Ribosomal protein L31 E3D14_10235 PF01863 Protein of unknown function DUF45 E3D14_10250 PF03606 C4-dicarboxylate anaerobic carrier E3D14_10260 PF05430 S-adenosyl-L-methionine-dependent methyltransferase E3D14_10260 PF01266 FAD dependent oxidoreductase E3D14_10265 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_10265 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_10280 PF00285 Citrate synthase, C-terminal domain E3D14_10285 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3D14_10290 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit E3D14_10295 PF02910 Fumarate reductase flavoprotein C-term E3D14_10295 PF00890 FAD binding domain E3D14_10300 PF13085 2Fe-2S iron-sulfur cluster binding domain E3D14_10305 PF16870 2-oxoglutarate dehydrogenase C-terminal E3D14_10305 PF16078 2-oxoglutarate dehydrogenase N-terminus E3D14_10305 PF00676 Dehydrogenase E1 component E3D14_10305 PF02779 Transketolase, pyrimidine binding domain E3D14_10310 PF02817 e3 binding domain E3D14_10310 PF00364 Biotin-requiring enzyme E3D14_10310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3D14_10315 PF00549 CoA-ligase E3D14_10315 PF08442 ATP-grasp domain E3D14_10320 PF00549 CoA-ligase E3D14_10320 PF02629 CoA binding domain E3D14_10325 PF03692 Putative zinc- or iron-chelating domain E3D14_10330 PF02901 Pyruvate formate lyase-like E3D14_10330 PF01228 Glycine radical E3D14_10335 PF01226 Formate/nitrite transporter E3D14_10340 PF18381 YcaO cyclodehydratase C-terminal domain E3D14_10340 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding E3D14_10345 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3D14_10345 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3D14_10350 PF00675 Insulinase (Peptidase family M16) E3D14_10350 PF05193 Peptidase M16 inactive domain E3D14_10355 PF01053 Cys/Met metabolism PLP-dependent enzyme E3D14_10365 PF13460 NAD(P)H-binding E3D14_10370 PF03466 LysR substrate binding domain E3D14_10370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_10375 PF00106 short chain dehydrogenase E3D14_10380 PF12833 Helix-turn-helix domain E3D14_10380 PF06445 GyrI-like small molecule binding domain E3D14_10385 PF00593 TonB dependent receptor E3D14_10385 PF07715 TonB-dependent Receptor Plug Domain E3D14_10395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_10395 PF03466 LysR substrate binding domain E3D14_10400 PF01717 Cobalamin-independent synthase, Catalytic domain E3D14_10400 PF08267 Cobalamin-independent synthase, N-terminal domain E3D14_10415 PF07969 Amidohydrolase family E3D14_10425 PF01266 FAD dependent oxidoreductase E3D14_10430 PF04244 Deoxyribodipyrimidine photo-lyase-related protein E3D14_10440 PF01212 Beta-eliminating lyase E3D14_10445 PF00768 D-alanyl-D-alanine carboxypeptidase E3D14_10455 PF03918 Cytochrome C biogenesis protein E3D14_10460 PF08534 Redoxin E3D14_10465 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3D14_10465 PF01578 Cytochrome C assembly protein E3D14_10470 PF03916 Polysulphide reductase, NrfD E3D14_10475 PF13247 4Fe-4S dicluster domain E3D14_10475 PF00037 4Fe-4S binding domain E3D14_10480 PF13435 Cytochrome c554 and c-prime E3D14_10480 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) E3D14_10485 PF02335 Cytochrome c552 E3D14_10490 PF02754 Cysteine-rich domain E3D14_10490 PF13183 4Fe-4S dicluster domain E3D14_10495 PF00890 FAD binding domain E3D14_10500 PF01266 FAD dependent oxidoreductase E3D14_10500 PF04324 BFD-like [2Fe-2S] binding domain E3D14_10505 PF02810 SEC-C motif E3D14_10510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_10510 PF00672 HAMP domain E3D14_10510 PF17200 Single Cache domain 2 E3D14_10515 PF00480 ROK family E3D14_10515 PF01047 MarR family E3D14_10520 PF17203 Single cache domain 3 E3D14_10520 PF00989 PAS fold E3D14_10520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_10520 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3D14_10525 PF12431 Transcriptional regulator E3D14_10525 PF08279 HTH domain E3D14_10525 PF00072 Response regulator receiver domain E3D14_10530 PF01970 Tripartite tricarboxylate transporter TctA family E3D14_10545 PF01464 Transglycosylase SLT domain E3D14_10545 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_10550 PF06826 Predicted Permease Membrane Region E3D14_10550 PF02080 TrkA-C domain E3D14_10565 PF04851 Type III restriction enzyme, res subunit E3D14_10565 PF00271 Helicase conserved C-terminal domain E3D14_10565 PF02151 UvrB/uvrC motif E3D14_10565 PF12344 Ultra-violet resistance protein B E3D14_10565 PF17757 UvrB interaction domain E3D14_10575 PF09335 SNARE associated Golgi protein E3D14_10580 PF02600 Disulfide bond formation protein DsbB E3D14_10585 PF06450 Bacterial Na+/H+ antiporter B (NhaB) E3D14_10590 PF07840 FadR C-terminal domain E3D14_10590 PF00392 Bacterial regulatory proteins, gntR family E3D14_10595 PF04293 SpoVR like protein E3D14_10600 PF04285 Protein of unknown function (DUF444) E3D14_10605 PF06798 PrkA serine protein kinase C-terminal domain E3D14_10605 PF08298 PrkA AAA domain E3D14_10610 PF16124 RecQ zinc-binding E3D14_10610 PF00270 DEAD/DEAH box helicase E3D14_10610 PF00570 HRDC domain E3D14_10610 PF09382 RQC domain E3D14_10610 PF00271 Helicase conserved C-terminal domain E3D14_10615 PF00375 Sodium:dicarboxylate symporter family E3D14_10620 PF03222 Tryptophan/tyrosine permease family E3D14_10625 PF00293 NUDIX domain E3D14_10630 PF04715 Anthranilate synthase component I, N terminal region E3D14_10630 PF00425 chorismate binding enzyme E3D14_10660 PF00343 Carbohydrate phosphorylase E3D14_10665 PF00939 Sodium:sulfate symporter transmembrane region E3D14_10670 PF00085 Thioredoxin E3D14_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_10675 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) E3D14_10675 PF00512 His Kinase A (phospho-acceptor) domain E3D14_10675 PF00672 HAMP domain E3D14_10675 PF00072 Response regulator receiver domain E3D14_10675 PF01627 Hpt domain E3D14_10685 PF00664 ABC transporter transmembrane region E3D14_10685 PF00005 ABC transporter E3D14_10700 PF01575 MaoC like domain E3D14_10705 PF00561 alpha/beta hydrolase fold E3D14_10705 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus E3D14_10725 PF08543 Phosphomethylpyrimidine kinase E3D14_10730 PF03992 Antibiotic biosynthesis monooxygenase E3D14_10735 PF00465 Iron-containing alcohol dehydrogenase E3D14_10755 PF01928 CYTH domain E3D14_10770 PF02694 Uncharacterised BCR, YnfA/UPF0060 family E3D14_10780 PF13673 Acetyltransferase (GNAT) domain E3D14_10785 PF00270 DEAD/DEAH box helicase E3D14_10785 PF00271 Helicase conserved C-terminal domain E3D14_10790 PF00255 Glutathione peroxidase E3D14_10800 PF01820 D-ala D-ala ligase N-terminus E3D14_10800 PF07478 D-ala D-ala ligase C-terminus E3D14_10815 PF01925 Sulfite exporter TauE/SafE E3D14_10820 PF03466 LysR substrate binding domain E3D14_10820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_10830 PF12833 Helix-turn-helix domain E3D14_10830 PF14525 AraC-binding-like domain E3D14_10835 PF11398 Protein of unknown function (DUF2813) E3D14_10875 PF00883 Cytosol aminopeptidase family, catalytic domain E3D14_10875 PF02789 Cytosol aminopeptidase family, N-terminal domain E3D14_10880 PF13419 Haloacid dehalogenase-like hydrolase E3D14_10925 PF00365 Phosphofructokinase E3D14_10930 PF00121 Triosephosphate isomerase E3D14_10935 PF02698 DUF218 domain E3D14_10945 PF17192 MukF middle domain E3D14_10945 PF17193 MukF C-terminal domain E3D14_10945 PF03882 MukF winged-helix domain E3D14_10950 PF04288 MukE-like family E3D14_10955 PF16330 MukB hinge domain E3D14_10955 PF04310 MukB N-terminal E3D14_10960 PF03330 Lytic transglycolase E3D14_10960 PF05036 Sporulation related domain E3D14_11025 PF07152 YaeQ protein E3D14_11035 PF07690 Major Facilitator Superfamily E3D14_11040 PF00005 ABC transporter E3D14_11045 PF01032 FecCD transport family E3D14_11065 PF05433 Glycine zipper 2TM domain E3D14_11090 PF03466 LysR substrate binding domain E3D14_11090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_11095 PF01261 Xylose isomerase-like TIM barrel E3D14_11100 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3D14_11100 PF02894 Oxidoreductase family, C-terminal alpha/beta domain E3D14_11105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_11105 PF03466 LysR substrate binding domain E3D14_11115 PF03279 Bacterial lipid A biosynthesis acyltransferase E3D14_11120 PF03279 Bacterial lipid A biosynthesis acyltransferase E3D14_11135 PF00990 Diguanylate cyclase, GGDEF domain E3D14_11145 PF00136 DNA polymerase family B E3D14_11145 PF03104 DNA polymerase family B, exonuclease domain E3D14_11170 PF01554 MatE E3D14_11175 PF06786 Uncharacterised protein family (UPF0253) E3D14_11180 PF00677 Lumazine binding domain E3D14_11190 PF13419 Haloacid dehalogenase-like hydrolase E3D14_11195 PF02222 ATP-grasp domain E3D14_11205 PF02525 Flavodoxin-like fold E3D14_11230 PF17783 CvfB-like winged helix domain E3D14_11230 PF13509 S1 domain E3D14_11240 PF04269 Protein of unknown function, DUF440 E3D14_11245 PF00912 Transglycosylase E3D14_11250 PF04269 Protein of unknown function, DUF440 E3D14_11255 PF03776 Septum formation topological specificity factor MinE E3D14_11260 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3D14_11265 PF03775 Septum formation inhibitor MinC, C-terminal domain E3D14_11265 PF05209 Septum formation inhibitor MinC, N-terminal domain E3D14_11270 PF05166 YcgL domain E3D14_11275 PF13406 Transglycosylase SLT domain E3D14_11280 PF03313 Serine dehydratase alpha chain E3D14_11280 PF03315 Serine dehydratase beta chain E3D14_11290 PF03313 Serine dehydratase alpha chain E3D14_11290 PF03315 Serine dehydratase beta chain E3D14_11295 PF06865 Pyrimidine/purine nucleoside phosphorylase E3D14_11300 PF00375 Sodium:dicarboxylate symporter family E3D14_11305 PF09278 MerR, DNA binding E3D14_11305 PF00376 MerR family regulatory protein E3D14_11310 PF02803 Thiolase, C-terminal domain E3D14_11310 PF00108 Thiolase, N-terminal domain E3D14_11315 PF08668 HDOD domain E3D14_11315 PF00563 EAL domain E3D14_11320 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3D14_11325 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) E3D14_11335 PF04542 Sigma-70 region 2 E3D14_11335 PF04545 Sigma-70, region 4 E3D14_11350 PF17863 AAA lid domain E3D14_11350 PF07728 AAA domain (dynein-related subfamily) E3D14_11350 PF13519 von Willebrand factor type A domain E3D14_11360 PF01882 Protein of unknown function DUF58 E3D14_11365 PF17863 AAA lid domain E3D14_11365 PF07726 ATPase family associated with various cellular activities (AAA) E3D14_11370 PF02803 Thiolase, C-terminal domain E3D14_11370 PF00108 Thiolase, N-terminal domain E3D14_11375 PF00378 Enoyl-CoA hydratase/isomerase E3D14_11375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3D14_11375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3D14_11380 PF03831 PhnA domain E3D14_11380 PF08274 PhnA Zinc-Ribbon E3D14_11390 PF08329 Chitinase A, N-terminal domain E3D14_11390 PF00704 Glycosyl hydrolases family 18 E3D14_11400 PF13407 Periplasmic binding protein domain E3D14_11405 PF00005 ABC transporter E3D14_11415 PF02653 Branched-chain amino acid transport system / permease component E3D14_11420 PF00990 Diguanylate cyclase, GGDEF domain E3D14_11420 PF01590 GAF domain E3D14_11420 PF00360 Phytochrome region E3D14_11420 PF00563 EAL domain E3D14_11425 PF04972 BON domain E3D14_11455 PF01338 Bacillus thuringiensis toxin E3D14_11485 PF13193 AMP-binding enzyme C-terminal domain E3D14_11485 PF00501 AMP-binding enzyme E3D14_11490 PF13280 WYL domain E3D14_11490 PF08279 HTH domain E3D14_11500 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase E3D14_11500 PF01502 Phosphoribosyl-AMP cyclohydrolase E3D14_11505 PF00977 Histidine biosynthesis protein E3D14_11510 PF00512 His Kinase A (phospho-acceptor) domain E3D14_11510 PF00072 Response regulator receiver domain E3D14_11510 PF01627 Hpt domain E3D14_11510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_11520 PF00072 Response regulator receiver domain E3D14_11525 PF00977 Histidine biosynthesis protein E3D14_11530 PF00117 Glutamine amidotransferase class-I E3D14_11535 PF00475 Imidazoleglycerol-phosphate dehydratase E3D14_11535 PF08645 Polynucleotide kinase 3 phosphatase E3D14_11540 PF00155 Aminotransferase class I and II E3D14_11545 PF00815 Histidinol dehydrogenase E3D14_11550 PF01634 ATP phosphoribosyltransferase E3D14_11550 PF08029 HisG, C-terminal domain E3D14_11560 PF04851 Type III restriction enzyme, res subunit E3D14_11560 PF13307 Helicase C-terminal domain E3D14_11565 PF00814 Glycoprotease family E3D14_11575 PF12697 Alpha/beta hydrolase family E3D14_11580 PF00501 AMP-binding enzyme E3D14_11580 PF13193 AMP-binding enzyme C-terminal domain E3D14_11585 PF01612 3'-5' exonuclease E3D14_11585 PF00570 HRDC domain E3D14_11600 PF01207 Dihydrouridine synthase (Dus) E3D14_11605 PF04304 Protein of unknown function (DUF454) E3D14_11610 PF00156 Phosphoribosyl transferase domain E3D14_11615 PF12170 DNA polymerase III tau subunit V interacting with alpha E3D14_11615 PF12169 DNA polymerase III subunits gamma and tau domain III E3D14_11615 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding E3D14_11620 PF02575 YbaB/EbfC DNA-binding family E3D14_11630 PF00196 Bacterial regulatory proteins, luxR family E3D14_11630 PF00072 Response regulator receiver domain E3D14_11640 PF00270 DEAD/DEAH box helicase E3D14_11640 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold E3D14_11640 PF00271 Helicase conserved C-terminal domain E3D14_11640 PF04408 Helicase associated domain (HA2) E3D14_11640 PF11898 Domain of unknown function (DUF3418) E3D14_11650 PF01386 Ribosomal L25p family E3D14_11655 PF00753 Metallo-beta-lactamase superfamily E3D14_11665 PF00586 AIR synthase related protein, N-terminal domain E3D14_11665 PF02769 AIR synthase related protein, C-terminal domain E3D14_11680 PF17785 PUA-like domain E3D14_11680 PF10672 S-adenosylmethionine-dependent methyltransferase E3D14_11685 PF12729 Four helix bundle sensory module for signal transduction E3D14_11685 PF00672 HAMP domain E3D14_11685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_11690 PF00708 Acylphosphatase E3D14_11700 PF08264 Anticodon-binding domain of tRNA E3D14_11700 PF09334 tRNA synthetases class I (M) E3D14_11700 PF01588 Putative tRNA binding domain E3D14_11705 PF10609 NUBPL iron-transfer P-loop NTPase E3D14_11710 PF00485 Phosphoribulokinase / Uridine kinase family E3D14_11715 PF00692 dUTPase E3D14_11720 PF01384 Phosphate transporter family E3D14_11725 PF00575 S1 RNA binding domain E3D14_11725 PF10150 Ribonuclease E/G family E3D14_11725 PF12111 Polyribonucleotide phosphorylase C terminal E3D14_11730 PF00849 RNA pseudouridylate synthase E3D14_11730 PF01479 S4 domain E3D14_11735 PF13419 Haloacid dehalogenase-like hydrolase E3D14_11740 PF02545 Maf-like protein E3D14_11745 PF02620 Large ribosomal RNA subunit accumulation protein YceD E3D14_11750 PF01783 Ribosomal L32p protein family E3D14_11755 PF02504 Fatty acid synthesis protein E3D14_11760 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III E3D14_11760 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal E3D14_11765 PF00698 Acyl transferase domain E3D14_11775 PF00550 Phosphopantetheine attachment site E3D14_11780 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_11780 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_11785 PF01063 Amino-transferase class IV E3D14_11790 PF02618 YceG-like family E3D14_11795 PF02223 Thymidylate kinase E3D14_11800 PF09115 DNA polymerase III, delta subunit, C terminal E3D14_11805 PF01026 TatD related DNase E3D14_11820 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF E3D14_11820 PF01189 16S rRNA methyltransferase RsmB/F E3D14_11820 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF E3D14_11830 PF04403 Paraquat-inducible protein A E3D14_11850 PF03972 MmgE/PrpD family E3D14_11865 PF06974 Protein of unknown function (DUF1298) E3D14_11865 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain E3D14_11890 PF00106 short chain dehydrogenase E3D14_11965 PF05707 Zonular occludens toxin (Zot) E3D14_11975 PF01695 IstB-like ATP binding protein E3D14_12040 PF05707 Zonular occludens toxin (Zot) E3D14_12055 PF05362 Lon protease (S16) C-terminal proteolytic domain E3D14_12055 PF13654 AAA domain E3D14_12060 PF07977 FabA-like domain E3D14_12065 PF04957 Ribosome modulation factor E3D14_12085 PF01170 Putative RNA methylase family UPF0020 E3D14_12085 PF02926 THUMP domain E3D14_12085 PF10672 S-adenosylmethionine-dependent methyltransferase E3D14_12090 PF07126 Cell-division protein ZapC E3D14_12095 PF01180 Dihydroorotate dehydrogenase E3D14_12100 PF05088 Bacterial NAD-glutamate dehydrogenase E3D14_12110 PF17432 Domain of unknown function (DUF3458_C) ARM repeats E3D14_12110 PF11940 Domain of unknown function (DUF3458) Ig-like fold E3D14_12110 PF01433 Peptidase family M1 domain E3D14_12115 PF17804 Tail specific protease N-terminal domain E3D14_12115 PF00595 PDZ domain E3D14_12115 PF03572 Peptidase family S41 E3D14_12115 PF11818 C-terminal domain of tail specific protease (DUF3340) E3D14_12120 PF04352 ProQ/FINO family E3D14_12120 PF17516 ProQ C-terminal domain E3D14_12125 PF13185 GAF domain E3D14_12135 PF00115 Cytochrome C and Quinol oxidase polypeptide I E3D14_12150 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP E3D14_12150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III E3D14_12160 PF00403 Heavy-metal-associated domain E3D14_12175 PF00027 Cyclic nucleotide-binding domain E3D14_12175 PF13545 Crp-like helix-turn-helix domain E3D14_12180 PF00582 Universal stress protein family E3D14_12185 PF01171 PP-loop family E3D14_12200 PF02798 Glutathione S-transferase, N-terminal domain E3D14_12200 PF00043 Glutathione S-transferase, C-terminal domain E3D14_12205 PF05025 RbsD / FucU transport protein family E3D14_12215 PF02653 Branched-chain amino acid transport system / permease component E3D14_12220 PF13407 Periplasmic binding protein domain E3D14_12225 PF00294 pfkB family carbohydrate kinase E3D14_12230 PF00356 Bacterial regulatory proteins, lacI family E3D14_12235 PF00990 Diguanylate cyclase, GGDEF domain E3D14_12235 PF17152 Periplasmic sensor domain E3D14_12245 PF02146 Sir2 family E3D14_12265 PF00216 Bacterial DNA-binding protein E3D14_12270 PF01588 Putative tRNA binding domain E3D14_12270 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain E3D14_12270 PF03483 B3/4 domain E3D14_12270 PF03147 Ferredoxin-fold anticodon binding domain E3D14_12270 PF03484 tRNA synthetase B5 domain E3D14_12275 PF01409 tRNA synthetases class II core domain (F) E3D14_12275 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain E3D14_12280 PF00453 Ribosomal protein L20 E3D14_12285 PF01632 Ribosomal protein L35 E3D14_12290 PF00707 Translation initiation factor IF-3, C-terminal domain E3D14_12290 PF05198 Translation initiation factor IF-3, N-terminal domain E3D14_12295 PF02824 TGS domain E3D14_12295 PF03129 Anticodon binding domain E3D14_12295 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain E3D14_12295 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D14_12305 PF04055 Radical SAM superfamily E3D14_12310 PF03989 DNA gyrase C-terminal domain, beta-propeller E3D14_12310 PF00521 DNA gyrase/topoisomerase IV, subunit A E3D14_12320 PF13419 Haloacid dehalogenase-like hydrolase E3D14_12325 PF03477 ATP cone domain E3D14_12325 PF00317 Ribonucleotide reductase, all-alpha domain E3D14_12325 PF02867 Ribonucleotide reductase, barrel domain E3D14_12330 PF00268 Ribonucleotide reductase, small chain E3D14_12335 PF00111 2Fe-2S iron-sulfur cluster binding domain E3D14_12340 PF06725 3D domain E3D14_12340 PF03562 MltA specific insert domain E3D14_12345 PF06945 Protein of unknown function (DUF1289) E3D14_12350 PF02378 Phosphotransferase system, EIIC E3D14_12350 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3D14_12355 PF00294 pfkB family carbohydrate kinase E3D14_12360 PF00381 PTS HPr component phosphorylation site E3D14_12360 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3D14_12365 PF00356 Bacterial regulatory proteins, lacI family E3D14_12365 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family E3D14_12370 PF03222 Tryptophan/tyrosine permease family E3D14_12385 PF00271 Helicase conserved C-terminal domain E3D14_12385 PF00270 DEAD/DEAH box helicase E3D14_12395 PF01264 Chorismate synthase E3D14_12400 PF05175 Methyltransferase small domain E3D14_12405 PF01713 Smr domain E3D14_12410 PF00990 Diguanylate cyclase, GGDEF domain E3D14_12410 PF08448 PAS fold E3D14_12460 PF01925 Sulfite exporter TauE/SafE E3D14_12465 PF13520 Amino acid permease E3D14_12475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase E3D14_12475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase E3D14_12480 PF00378 Enoyl-CoA hydratase/isomerase E3D14_12485 PF00378 Enoyl-CoA hydratase/isomerase E3D14_12490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3D14_12490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3D14_12490 PF02770 Acyl-CoA dehydrogenase, middle domain E3D14_12495 PF00171 Aldehyde dehydrogenase family E3D14_12500 PF02770 Acyl-CoA dehydrogenase, middle domain E3D14_12500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3D14_12500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3D14_12505 PF01039 Carboxyl transferase domain E3D14_12510 PF00378 Enoyl-CoA hydratase/isomerase E3D14_12515 PF00364 Biotin-requiring enzyme E3D14_12515 PF02785 Biotin carboxylase C-terminal domain E3D14_12515 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3D14_12515 PF00289 Biotin carboxylase, N-terminal domain E3D14_12520 PF00682 HMGL-like E3D14_12525 PF00376 MerR family regulatory protein E3D14_12525 PF09278 MerR, DNA binding E3D14_12540 PF01184 GPR1/FUN34/yaaH family E3D14_12550 PF00583 Acetyltransferase (GNAT) family E3D14_12555 PF01235 Sodium:alanine symporter family E3D14_12560 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3D14_12560 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3D14_12560 PF00378 Enoyl-CoA hydratase/isomerase E3D14_12575 PF04341 Protein of unknown function, DUF485 E3D14_12580 PF00474 Sodium:solute symporter family E3D14_12585 PF00005 ABC transporter E3D14_12585 PF12848 ABC transporter E3D14_12590 PF13145 PPIC-type PPIASE domain E3D14_12595 PF00216 Bacterial DNA-binding protein E3D14_12600 PF02190 ATP-dependent protease La (LON) substrate-binding domain E3D14_12600 PF05362 Lon protease (S16) C-terminal proteolytic domain E3D14_12600 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_12605 PF10431 C-terminal, D2-small domain, of ClpB protein E3D14_12605 PF06689 ClpX C4-type zinc finger E3D14_12605 PF07724 AAA domain (Cdc48 subfamily) E3D14_12610 PF00574 Clp protease E3D14_12615 PF05697 Bacterial trigger factor protein (TF) E3D14_12615 PF05698 Bacterial trigger factor protein (TF) C-terminus E3D14_12615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_12635 PF02687 FtsX-like permease family E3D14_12635 PF12704 MacB-like periplasmic core domain E3D14_12640 PF00005 ABC transporter E3D14_12645 PF02687 FtsX-like permease family E3D14_12645 PF12704 MacB-like periplasmic core domain E3D14_12655 PF00270 DEAD/DEAH box helicase E3D14_12655 PF00271 Helicase conserved C-terminal domain E3D14_12655 PF03461 TRCF domain E3D14_12655 PF17757 UvrB interaction domain E3D14_12655 PF02559 CarD-like/TRCF domain E3D14_12660 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain E3D14_12665 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_12670 PF00892 EamA-like transporter family E3D14_12680 PF00300 Histidine phosphatase superfamily (branch 1) E3D14_12685 PF00675 Insulinase (Peptidase family M16) E3D14_12685 PF05193 Peptidase M16 inactive domain E3D14_12685 PF16187 Middle or third domain of peptidase_M16 E3D14_12690 PF05724 Thiopurine S-methyltransferase (TPMT) E3D14_12720 PF02540 NAD synthase E3D14_12720 PF00958 GMP synthase C terminal domain E3D14_12720 PF00117 Glutamine amidotransferase class-I E3D14_12725 PF00478 IMP dehydrogenase / GMP reductase domain E3D14_12725 PF00571 CBS domain E3D14_12735 PF01618 MotA/TolQ/ExbB proton channel family E3D14_12740 PF02472 Biopolymer transport protein ExbD/TolR E3D14_12745 PF01292 Prokaryotic cytochrome b561 E3D14_12750 PF02601 Exonuclease VII, large subunit E3D14_12750 PF13742 OB-fold nucleic acid binding domain E3D14_12755 PF04055 Radical SAM superfamily E3D14_12765 PF00793 DAHP synthetase I family E3D14_12770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3D14_12775 PF00266 Aminotransferase class-V E3D14_12780 PF00766 Electron transfer flavoprotein FAD-binding domain E3D14_12780 PF01012 Electron transfer flavoprotein domain E3D14_12785 PF01012 Electron transfer flavoprotein domain E3D14_12800 PF01544 CorA-like Mg2+ transporter protein E3D14_12805 PF11143 Protein of unknown function (DUF2919) E3D14_12820 PF00593 TonB dependent receptor E3D14_12820 PF07715 TonB-dependent Receptor Plug Domain E3D14_12825 PF01032 FecCD transport family E3D14_12830 PF01032 FecCD transport family E3D14_12835 PF00005 ABC transporter E3D14_12840 PF01648 4'-phosphopantetheinyl transferase superfamily E3D14_12840 PF17837 4'-phosphopantetheinyl transferase N-terminal domain E3D14_12845 PF01497 Periplasmic binding protein E3D14_12850 PF13193 AMP-binding enzyme C-terminal domain E3D14_12850 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_12850 PF14765 Polyketide synthase dehydratase E3D14_12850 PF00550 Phosphopantetheine attachment site E3D14_12850 PF08659 KR domain E3D14_12850 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_12850 PF00501 AMP-binding enzyme E3D14_12850 PF00668 Condensation domain E3D14_12850 PF16197 Ketoacyl-synthetase C-terminal extension E3D14_12855 PF00501 AMP-binding enzyme E3D14_12855 PF07993 Male sterility protein E3D14_12855 PF00550 Phosphopantetheine attachment site E3D14_12855 PF13193 AMP-binding enzyme C-terminal domain E3D14_12855 PF00668 Condensation domain E3D14_12865 PF00550 Phosphopantetheine attachment site E3D14_12865 PF00975 Thioesterase domain E3D14_12865 PF00501 AMP-binding enzyme E3D14_12865 PF00668 Condensation domain E3D14_12865 PF13193 AMP-binding enzyme C-terminal domain E3D14_12870 PF00857 Isochorismatase family E3D14_12870 PF00550 Phosphopantetheine attachment site E3D14_12875 PF00501 AMP-binding enzyme E3D14_12875 PF13193 AMP-binding enzyme C-terminal domain E3D14_12880 PF00425 chorismate binding enzyme E3D14_12885 PF07273 Protein of unknown function (DUF1439) E3D14_12895 PF00483 Nucleotidyl transferase E3D14_12900 PF03707 Bacterial signalling protein N terminal repeat E3D14_12900 PF00990 Diguanylate cyclase, GGDEF domain E3D14_12900 PF00563 EAL domain E3D14_12915 PF17200 Single Cache domain 2 E3D14_12915 PF00672 HAMP domain E3D14_12915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_12920 PF00294 pfkB family carbohydrate kinase E3D14_12925 PF01124 MAPEG family E3D14_12930 PF00762 Ferrochelatase E3D14_12935 PF05191 Adenylate kinase, active site lid E3D14_12945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_12945 PF00183 Hsp90 protein E3D14_12950 PF13662 Toprim domain E3D14_12950 PF02132 RecR protein E3D14_12955 PF02634 FdhD/NarQ family E3D14_12960 PF02954 Bacterial regulatory protein, Fis family E3D14_12960 PF00158 Sigma-54 interaction domain E3D14_12960 PF01590 GAF domain E3D14_12975 PF13247 4Fe-4S dicluster domain E3D14_12975 PF12800 4Fe-4S binding domain E3D14_12980 PF07693 KAP family P-loop domain E3D14_12995 PF02705 K+ potassium transporter E3D14_13000 PF00037 4Fe-4S binding domain E3D14_13000 PF12798 4Fe-4S binding domain E3D14_13005 PF00361 Proton-conducting membrane transporter E3D14_13010 PF00146 NADH dehydrogenase E3D14_13015 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3D14_13015 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3D14_13015 PF00374 Nickel-dependent hydrogenase E3D14_13020 PF12838 4Fe-4S dicluster domain E3D14_13025 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3D14_13030 PF07450 Formate hydrogenlyase maturation protein HycH E3D14_13035 PF01750 Hydrogenase maturation protease E3D14_13040 PF12390 Selenocysteine synthase N terminal E3D14_13040 PF03841 L-seryl-tRNA selenium transferase E3D14_13045 PF00009 Elongation factor Tu GTP binding domain E3D14_13045 PF09106 Elongation factor SelB, winged helix E3D14_13045 PF03144 Elongation factor Tu domain 2 E3D14_13045 PF09107 Elongation factor SelB, winged helix E3D14_13050 PF17788 HypF Kae1-like domain E3D14_13050 PF00708 Acylphosphatase E3D14_13050 PF01300 Telomere recombination E3D14_13050 PF07503 HypF finger E3D14_13055 PF01455 HupF/HypC family E3D14_13060 PF01924 Hydrogenase formation hypA family E3D14_13065 PF02769 AIR synthase related protein, C-terminal domain E3D14_13065 PF00586 AIR synthase related protein, N-terminal domain E3D14_13070 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA E3D14_13075 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3D14_13080 PF08402 TOBE domain E3D14_13080 PF00005 ABC transporter E3D14_13085 PF00005 ABC transporter E3D14_13090 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13090 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_13095 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13100 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_13105 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE E3D14_13110 PF01750 Hydrogenase maturation protease E3D14_13115 PF00374 Nickel-dependent hydrogenase E3D14_13120 PF03916 Polysulphide reductase, NrfD E3D14_13125 PF13247 4Fe-4S dicluster domain E3D14_13130 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3D14_13130 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal E3D14_13135 PF00842 Alanine racemase, C-terminal domain E3D14_13135 PF01168 Alanine racemase, N-terminal domain E3D14_13150 PF10722 Putative bacterial sensory transduction regulator E3D14_13160 PF00265 Thymidine kinase E3D14_13165 PF03553 Na+/H+ antiporter family E3D14_13175 PF00816 H-NS histone family E3D14_13180 PF01923 Cobalamin adenosyltransferase E3D14_13185 PF12843 Putative quorum-sensing-regulated virulence factor E3D14_13190 PF04055 Radical SAM superfamily E3D14_13195 PF06508 Queuosine biosynthesis protein QueC E3D14_13210 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family E3D14_13215 PF18073 Rubredoxin metal binding domain E3D14_13225 PF00216 Bacterial DNA-binding protein E3D14_13230 PF00575 S1 RNA binding domain E3D14_13235 PF02224 Cytidylate kinase E3D14_13240 PF00925 GTP cyclohydrolase II E3D14_13245 PF03466 LysR substrate binding domain E3D14_13245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_13250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_13250 PF03466 LysR substrate binding domain E3D14_13255 PF07690 Major Facilitator Superfamily E3D14_13270 PF00881 Nitroreductase family E3D14_13275 PF00563 EAL domain E3D14_13275 PF00990 Diguanylate cyclase, GGDEF domain E3D14_13275 PF03707 Bacterial signalling protein N terminal repeat E3D14_13290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_13290 PF03466 LysR substrate binding domain E3D14_13295 PF00072 Response regulator receiver domain E3D14_13305 PF01212 Beta-eliminating lyase E3D14_13310 PF00106 short chain dehydrogenase E3D14_13320 PF00248 Aldo/keto reductase family E3D14_13325 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) E3D14_13335 PF00005 ABC transporter E3D14_13340 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13345 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_13350 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13355 PF03411 Penicillin-insensitive murein endopeptidase E3D14_13365 PF04536 TPM domain E3D14_13380 PF01618 MotA/TolQ/ExbB proton channel family E3D14_13385 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3D14_13385 PF00691 OmpA family E3D14_13390 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 E3D14_13395 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit E3D14_13400 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit E3D14_13400 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit E3D14_13410 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit E3D14_13410 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region E3D14_13415 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region E3D14_13415 PF00384 Molybdopterin oxidoreductase E3D14_13415 PF04879 Molybdopterin oxidoreductase Fe4S4 domain E3D14_13420 PF00146 NADH dehydrogenase E3D14_13425 PF12838 4Fe-4S dicluster domain E3D14_13430 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 E3D14_13435 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L E3D14_13440 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus E3D14_13440 PF00361 Proton-conducting membrane transporter E3D14_13445 PF00361 Proton-conducting membrane transporter E3D14_13450 PF00361 Proton-conducting membrane transporter E3D14_13465 PF08447 PAS fold E3D14_13465 PF13426 PAS domain E3D14_13465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_13470 PF02355 Protein export membrane protein E3D14_13470 PF07549 SecD/SecF GG Motif E3D14_13475 PF02355 Protein export membrane protein E3D14_13475 PF13721 SecD export protein N-terminal TM region E3D14_13475 PF07549 SecD/SecF GG Motif E3D14_13510 PF01230 HIT domain E3D14_13515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_13515 PF00672 HAMP domain E3D14_13525 PF01979 Amidohydrolase family E3D14_13540 PF00375 Sodium:dicarboxylate symporter family E3D14_13550 PF00842 Alanine racemase, C-terminal domain E3D14_13550 PF01168 Alanine racemase, N-terminal domain E3D14_13555 PF03741 Integral membrane protein TerC family E3D14_13560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_13560 PF00005 ABC transporter E3D14_13570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_13570 PF00005 ABC transporter E3D14_13575 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13575 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_13580 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_13585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_13590 PF01914 MarC family integral membrane protein E3D14_13600 PF00465 Iron-containing alcohol dehydrogenase E3D14_13600 PF00171 Aldehyde dehydrogenase family E3D14_13605 PF01966 HD domain E3D14_13605 PF11871 Domain of unknown function (DUF3391) E3D14_13610 PF06580 Histidine kinase E3D14_13610 PF07694 5TMR of 5TMR-LYT E3D14_13615 PF00072 Response regulator receiver domain E3D14_13615 PF04397 LytTr DNA-binding domain E3D14_13620 PF02554 Carbon starvation protein CstA E3D14_13625 PF11742 Protein of unknown function (DUF3302) E3D14_13630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_13630 PF00529 HlyD membrane-fusion protein of T1SS E3D14_13635 PF04851 Type III restriction enzyme, res subunit E3D14_13635 PF00271 Helicase conserved C-terminal domain E3D14_13640 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family E3D14_13645 PF00462 Glutaredoxin E3D14_13655 PF00155 Aminotransferase class I and II E3D14_13660 PF03606 C4-dicarboxylate anaerobic carrier E3D14_13665 PF12241 Trans-2-enoyl-CoA reductase catalytic region E3D14_13665 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase E3D14_13665 PF07055 Enoyl reductase FAD binding domain E3D14_13730 PF00005 ABC transporter E3D14_13730 PF03412 Peptidase C39 family E3D14_13730 PF00664 ABC transporter transmembrane region E3D14_13735 PF16199 Radical_SAM C-terminal domain E3D14_13735 PF04055 Radical SAM superfamily E3D14_13740 PF00310 Glutamine amidotransferases class-II E3D14_13740 PF04898 Glutamate synthase central domain E3D14_13740 PF01645 Conserved region in glutamate synthase E3D14_13740 PF01493 GXGXG motif E3D14_13745 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster E3D14_13745 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_13760 PF00376 MerR family regulatory protein E3D14_13760 PF09278 MerR, DNA binding E3D14_13785 PF00271 Helicase conserved C-terminal domain E3D14_13785 PF00270 DEAD/DEAH box helicase E3D14_13790 PF13302 Acetyltransferase (GNAT) domain E3D14_13805 PF08378 Nuclease-related domain E3D14_13825 PF07759 Protein of unknown function (DUF1615) E3D14_13830 PF00682 HMGL-like E3D14_13830 PF08502 LeuA allosteric (dimerisation) domain E3D14_13835 PF02142 MGS-like domain E3D14_13835 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain E3D14_13835 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3D14_13840 PF00117 Glutamine amidotransferase class-I E3D14_13840 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain E3D14_13845 PF05173 Dihydrodipicolinate reductase, C-terminus E3D14_13845 PF01113 Dihydrodipicolinate reductase, N-terminus E3D14_13860 PF01812 5-formyltetrahydrofolate cyclo-ligase family E3D14_13865 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) E3D14_13870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D14_13870 PF01842 ACT domain E3D14_13870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_13875 PF01219 Prokaryotic diacylglycerol kinase E3D14_13880 PF00793 DAHP synthetase I family E3D14_13885 PF00005 ABC transporter E3D14_13890 PF01032 FecCD transport family E3D14_13895 PF00512 His Kinase A (phospho-acceptor) domain E3D14_13895 PF00989 PAS fold E3D14_13895 PF00072 Response regulator receiver domain E3D14_13895 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_13895 PF01627 Hpt domain E3D14_13895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_13905 PF00437 Type II/IV secretion system protein E3D14_13910 PF00483 Nucleotidyl transferase E3D14_13925 PF07670 Nucleoside recognition E3D14_13925 PF07664 Ferrous iron transport protein B C terminus E3D14_13925 PF02421 Ferrous iron transport protein B E3D14_13935 PF01253 Translation initiation factor SUI1 E3D14_13940 PF01169 Uncharacterized protein family UPF0016 E3D14_13995 PF09190 DALR domain E3D14_13995 PF01406 tRNA synthetases class I (C) catalytic domain E3D14_14000 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD E3D14_14010 PF00149 Calcineurin-like phosphoesterase E3D14_14030 PF03466 LysR substrate binding domain E3D14_14030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_14040 PF00589 Phage integrase family E3D14_14040 PF02899 Phage integrase, N-terminal SAM-like domain E3D14_14050 PF00717 Peptidase S24-like E3D14_14065 PF06892 Phage regulatory protein CII (CP76) E3D14_14255 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system E3D14_14275 PF01066 CDP-alcohol phosphatidyltransferase E3D14_14280 PF08459 UvrC Helix-hairpin-helix N-terminal E3D14_14280 PF02151 UvrB/uvrC motif E3D14_14280 PF01541 GIY-YIG catalytic domain E3D14_14285 PF00196 Bacterial regulatory proteins, luxR family E3D14_14285 PF00072 Response regulator receiver domain E3D14_14290 PF02348 Cytidylyltransferase E3D14_14295 PF03966 Trm112p-like protein E3D14_14300 PF02606 Tetraacyldisaccharide-1-P 4'-kinase E3D14_14305 PF00005 ABC transporter E3D14_14305 PF00664 ABC transporter transmembrane region E3D14_14310 PF03772 Competence protein E3D14_14310 PF00753 Metallo-beta-lactamase superfamily E3D14_14325 PF05872 Bacterial protein of unknown function (DUF853) E3D14_14330 PF00155 Aminotransferase class I and II E3D14_14340 PF13609 Gram-negative porin E3D14_14345 PF13307 Helicase C-terminal domain E3D14_14345 PF06733 DEAD_2 E3D14_14355 PF00850 Histone deacetylase domain E3D14_14360 PF01926 50S ribosome-binding GTPase E3D14_14365 PF00245 Alkaline phosphatase E3D14_14370 PF00245 Alkaline phosphatase E3D14_14385 PF14760 Rnk N-terminus E3D14_14385 PF01272 Transcription elongation factor, GreA/GreB, C-term E3D14_14390 PF00196 Bacterial regulatory proteins, luxR family E3D14_14390 PF00072 Response regulator receiver domain E3D14_14395 PF05231 MASE1 E3D14_14395 PF07730 Histidine kinase E3D14_14395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_14400 PF07690 Major Facilitator Superfamily E3D14_14405 PF08448 PAS fold E3D14_14405 PF00990 Diguanylate cyclase, GGDEF domain E3D14_14410 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_14415 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_14420 PF00005 ABC transporter E3D14_14425 PF04116 Fatty acid hydroxylase superfamily E3D14_14430 PF13520 Amino acid permease E3D14_14445 PF03471 Transporter associated domain E3D14_14445 PF00571 CBS domain E3D14_14445 PF01595 Cyclin M transmembrane N-terminal domain E3D14_14450 PF01895 PhoU domain E3D14_14460 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_14465 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_14470 PF14437 MafB19-like deaminase E3D14_14480 PF01274 Malate synthase E3D14_14485 PF00463 Isocitrate lyase family E3D14_14490 PF00308 Bacterial dnaA protein E3D14_14505 PF00586 AIR synthase related protein, N-terminal domain E3D14_14505 PF02769 AIR synthase related protein, C-terminal domain E3D14_14510 PF00551 Formyl transferase E3D14_14515 PF01784 NIF3 (NGG1p interacting factor 3) E3D14_14520 PF02954 Bacterial regulatory protein, Fis family E3D14_14520 PF00158 Sigma-54 interaction domain E3D14_14525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_14525 PF00989 PAS fold E3D14_14525 PF00512 His Kinase A (phospho-acceptor) domain E3D14_14545 PF02503 Polyphosphate kinase middle domain E3D14_14545 PF13090 Polyphosphate kinase C-terminal domain 2 E3D14_14545 PF17941 Polyphosphate kinase C-terminal domain 1 E3D14_14545 PF13089 Polyphosphate kinase N-terminal domain E3D14_14550 PF02541 Ppx/GppA phosphatase family E3D14_14555 PF00571 CBS domain E3D14_14555 PF03448 MgtE intracellular N domain E3D14_14555 PF01769 Divalent cation transporter E3D14_14570 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase E3D14_14570 PF10135 Rod binding protein E3D14_14575 PF02119 Flagellar P-ring protein E3D14_14580 PF02107 Flagellar L-ring protein E3D14_14585 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_14585 PF00460 Flagella basal body rod protein E3D14_14590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_14590 PF00460 Flagella basal body rod protein E3D14_14595 PF07559 Flagellar basal body protein FlaE E3D14_14595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_14595 PF00460 Flagella basal body rod protein E3D14_14605 PF00460 Flagella basal body rod protein E3D14_14605 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_14610 PF00460 Flagella basal body rod protein E3D14_14615 PF01739 CheR methyltransferase, SAM binding domain E3D14_14615 PF03705 CheR methyltransferase, all-alpha domain E3D14_14620 PF01584 CheW-like domain E3D14_14620 PF00072 Response regulator receiver domain E3D14_14640 PF12850 Calcineurin-like phosphoesterase superfamily domain E3D14_14645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_14655 PF01479 S4 domain E3D14_14655 PF00849 RNA pseudouridylate synthase E3D14_14660 PF11871 Domain of unknown function (DUF3391) E3D14_14660 PF01966 HD domain E3D14_14700 PF00313 'Cold-shock' DNA-binding domain E3D14_14705 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3D14_14705 PF00364 Biotin-requiring enzyme E3D14_14705 PF02817 e3 binding domain E3D14_14715 PF02779 Transketolase, pyrimidine binding domain E3D14_14715 PF02780 Transketolase, C-terminal domain E3D14_14720 PF00676 Dehydrogenase E1 component E3D14_14725 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family E3D14_14740 PF01695 IstB-like ATP binding protein E3D14_14745 PF00665 Integrase core domain E3D14_14755 PF04434 SWIM zinc finger E3D14_14755 PF00271 Helicase conserved C-terminal domain E3D14_14755 PF00176 SNF2 family N-terminal domain E3D14_14760 PF04337 Protein of unknown function, DUF480 E3D14_14770 PF02397 Bacterial sugar transferase E3D14_14785 PF13439 Glycosyltransferase Family 4 E3D14_14785 PF00534 Glycosyl transferases group 1 E3D14_14815 PF02719 Polysaccharide biosynthesis protein E3D14_14820 PF00953 Glycosyl transferase family 4 E3D14_14825 PF01370 NAD dependent epimerase/dehydratase family E3D14_14840 PF03600 Citrate transporter E3D14_14840 PF02080 TrkA-C domain E3D14_14845 PF02080 TrkA-C domain E3D14_14845 PF03600 Citrate transporter E3D14_14865 PF02350 UDP-N-acetylglucosamine 2-epimerase E3D14_14880 PF00005 ABC transporter E3D14_14890 PF00263 Bacterial type II and III secretion system protein E3D14_14890 PF03958 Bacterial type II/III secretion system short domain E3D14_14925 PF08334 Type II secretion system (T2SS), protein G E3D14_14925 PF07963 Prokaryotic N-terminal methylation motif E3D14_14930 PF00482 Type II secretion system (T2SS), protein F E3D14_14935 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3D14_14935 PF00437 Type II/IV secretion system protein E3D14_14945 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase E3D14_14950 PF00483 Nucleotidyl transferase E3D14_14955 PF04321 RmlD substrate binding domain E3D14_14960 PF16363 GDP-mannose 4,6 dehydratase E3D14_14970 PF02321 Outer membrane efflux protein E3D14_14975 PF00873 AcrB/AcrD/AcrF family E3D14_14980 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_14980 PF00529 HlyD membrane-fusion protein of T1SS E3D14_14985 PF00440 Bacterial regulatory proteins, tetR family E3D14_14985 PF08361 MAATS-type transcriptional repressor, C-terminal region E3D14_15005 PF01479 S4 domain E3D14_15005 PF00849 RNA pseudouridylate synthase E3D14_15010 PF04079 Segregation and condensation complex subunit ScpB E3D14_15015 PF02616 Segregation and condensation protein ScpA E3D14_15020 PF01300 Telomere recombination E3D14_15025 PF02811 PHP domain E3D14_15030 PF04715 Anthranilate synthase component I, N terminal region E3D14_15030 PF00425 chorismate binding enzyme E3D14_15035 PF00117 Glutamine amidotransferase class-I E3D14_15035 PF00591 Glycosyl transferase family, a/b domain E3D14_15035 PF02885 Glycosyl transferase family, helical bundle domain E3D14_15040 PF02885 Glycosyl transferase family, helical bundle domain E3D14_15040 PF00591 Glycosyl transferase family, a/b domain E3D14_15045 PF00218 Indole-3-glycerol phosphate synthase E3D14_15045 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase E3D14_15050 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_15055 PF00290 Tryptophan synthase alpha chain E3D14_15085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3D14_15085 PF02378 Phosphotransferase system, EIIC E3D14_15085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3D14_15090 PF07690 Major Facilitator Superfamily E3D14_15095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3D14_15105 PF00849 RNA pseudouridylate synthase E3D14_15110 PF00293 NUDIX domain E3D14_15120 PF04356 Protein of unknown function (DUF489) E3D14_15125 PF00206 Lyase E3D14_15125 PF08328 Adenylosuccinate lyase C-terminal E3D14_15130 PF08007 Cupin superfamily protein E3D14_15150 PF13508 Acetyltransferase (GNAT) domain E3D14_15160 PF00043 Glutathione S-transferase, C-terminal domain E3D14_15160 PF13417 Glutathione S-transferase, N-terminal domain E3D14_15165 PF01243 Pyridoxamine 5'-phosphate oxidase E3D14_15165 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region E3D14_15180 PF01029 NusB family E3D14_15180 PF01189 16S rRNA methyltransferase RsmB/F E3D14_15185 PF00462 Glutaredoxin E3D14_15190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain E3D14_15190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain E3D14_15195 PF04333 MlaA lipoprotein E3D14_15205 PF03918 Cytochrome C biogenesis protein E3D14_15210 PF08534 Redoxin E3D14_15215 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal E3D14_15215 PF01578 Cytochrome C assembly protein E3D14_15220 PF03100 CcmE E3D14_15225 PF04995 Heme exporter protein D (CcmD) E3D14_15230 PF01578 Cytochrome C assembly protein E3D14_15235 PF03379 CcmB protein E3D14_15240 PF00005 ABC transporter E3D14_15250 PF01584 CheW-like domain E3D14_15260 PF13614 AAA domain E3D14_15265 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3D14_15265 PF00691 OmpA family E3D14_15270 PF01618 MotA/TolQ/ExbB proton channel family E3D14_15275 PF01339 CheB methylesterase E3D14_15275 PF00072 Response regulator receiver domain E3D14_15280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_15280 PF01584 CheW-like domain E3D14_15280 PF07194 P2 response regulator binding domain E3D14_15280 PF01627 Hpt domain E3D14_15280 PF02895 Signal transducing histidine kinase, homodimeric domain E3D14_15285 PF04344 Chemotaxis phosphatase, CheZ E3D14_15290 PF00072 Response regulator receiver domain E3D14_15295 PF04545 Sigma-70, region 4 E3D14_15295 PF04542 Sigma-70 region 2 E3D14_15295 PF04539 Sigma-70 region 3 E3D14_15300 PF10609 NUBPL iron-transfer P-loop NTPase E3D14_15305 PF00448 SRP54-type protein, GTPase domain E3D14_15310 PF00771 FHIPEP family E3D14_15315 PF01312 FlhB HrpN YscU SpaS Family E3D14_15320 PF01311 Bacterial export proteins, family 1 E3D14_15325 PF01313 Bacterial export proteins, family 3 E3D14_15330 PF00813 FliP family E3D14_15335 PF04347 Flagellar biosynthesis protein, FliO E3D14_15340 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D14_15345 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D14_15345 PF02154 Flagellar motor switch protein FliM E3D14_15365 PF18269 T3SS EscN ATPase C-terminal domain E3D14_15365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_15375 PF01706 FliG C-terminal domain E3D14_15375 PF14842 FliG N-terminal domain E3D14_15375 PF14841 FliG middle domain E3D14_15380 PF01514 Secretory protein of YscJ/FliF family E3D14_15380 PF08345 Flagellar M-ring protein C-terminal E3D14_15385 PF02049 Flagellar hook-basal body complex protein FliE E3D14_15395 PF07969 Amidohydrolase family E3D14_15410 PF02001 Protein of unknown function DUF134 E3D14_15425 PF00072 Response regulator receiver domain E3D14_15430 PF18693 TRAM domain E3D14_15430 PF04055 Radical SAM superfamily E3D14_15430 PF00919 Uncharacterized protein family UPF0004 E3D14_15440 PF00486 Transcriptional regulatory protein, C terminal E3D14_15440 PF00072 Response regulator receiver domain E3D14_15445 PF00989 PAS fold E3D14_15445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3D14_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_15445 PF17203 Single cache domain 3 E3D14_15450 PF02685 Glucokinase E3D14_15455 PF01418 Helix-turn-helix domain, rpiR family E3D14_15455 PF01380 SIS domain E3D14_15460 PF00224 Pyruvate kinase, barrel domain E3D14_15460 PF02887 Pyruvate kinase, alpha/beta domain E3D14_15470 PF00873 AcrB/AcrD/AcrF family E3D14_15475 PF00441 Acyl-CoA dehydrogenase, C-terminal domain E3D14_15475 PF02770 Acyl-CoA dehydrogenase, middle domain E3D14_15475 PF09317 Domain of unknown function (DUF1974) E3D14_15475 PF02771 Acyl-CoA dehydrogenase, N-terminal domain E3D14_15480 PF00440 Bacterial regulatory proteins, tetR family E3D14_15520 PF05593 RHS Repeat E3D14_15520 PF03527 RHS protein E3D14_15530 PF01695 IstB-like ATP binding protein E3D14_15535 PF00665 Integrase core domain E3D14_15570 PF01476 LysM domain E3D14_15570 PF17969 L,D-transpeptidase C-terminal domain E3D14_15570 PF03734 L,D-transpeptidase catalytic domain E3D14_15580 PF01575 MaoC like domain E3D14_15585 PF05971 RNA methyltransferase E3D14_15590 PF00877 NlpC/P60 family E3D14_15595 PF01648 4'-phosphopantetheinyl transferase superfamily E3D14_15610 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3D14_15615 PF00551 Formyl transferase E3D14_15615 PF01842 ACT domain E3D14_15625 PF13091 PLD-like domain E3D14_15625 PF13396 Phospholipase_D-nuclease N-terminal E3D14_15640 PF01551 Peptidase family M23 E3D14_15645 PF00128 Alpha amylase, catalytic domain E3D14_15650 PF01464 Transglycosylase SLT domain E3D14_15650 PF10145 Phage-related minor tail protein E3D14_15650 PF01551 Peptidase family M23 E3D14_15655 PF00230 Major intrinsic protein E3D14_15660 PF02075 Crossover junction endodeoxyribonuclease RuvC E3D14_15665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold E3D14_15700 PF11842 Domain of unknown function (DUF3362) E3D14_15700 PF04055 Radical SAM superfamily E3D14_15700 PF08497 Radical SAM N-terminal E3D14_15710 PF00873 AcrB/AcrD/AcrF family E3D14_15715 PF13533 Biotin-lipoyl like E3D14_15720 PF05230 MASE2 domain E3D14_15720 PF00990 Diguanylate cyclase, GGDEF domain E3D14_15725 PF01734 Patatin-like phospholipase E3D14_15730 PF00209 Sodium:neurotransmitter symporter family E3D14_15745 PF00691 OmpA family E3D14_15745 PF01389 OmpA-like transmembrane domain E3D14_15750 PF01389 OmpA-like transmembrane domain E3D14_15750 PF00691 OmpA family E3D14_15755 PF01389 OmpA-like transmembrane domain E3D14_15755 PF00691 OmpA family E3D14_15760 PF03949 Malic enzyme, NAD binding domain E3D14_15760 PF00390 Malic enzyme, N-terminal domain E3D14_15765 PF12833 Helix-turn-helix domain E3D14_15770 PF01554 MatE E3D14_15775 PF10692 Protein of unknown function (DUF2498) E3D14_15780 PF00072 Response regulator receiver domain E3D14_15780 PF00990 Diguanylate cyclase, GGDEF domain E3D14_15785 PF00860 Permease family E3D14_15795 PF01235 Sodium:alanine symporter family E3D14_15800 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain E3D14_15800 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain E3D14_15805 PF01699 Sodium/calcium exchanger protein E3D14_15810 PF08534 Redoxin E3D14_15810 PF00462 Glutaredoxin E3D14_15820 PF00293 NUDIX domain E3D14_15840 PF00005 ABC transporter E3D14_15845 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase E3D14_15845 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_15850 PF03932 CutC family E3D14_15855 PF00480 ROK family E3D14_15865 PF01435 Peptidase family M48 E3D14_15870 PF12849 PBP superfamily domain E3D14_15875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_15875 PF11808 Phosphate regulon sensor protein PhoR E3D14_15875 PF00989 PAS fold E3D14_15875 PF00512 His Kinase A (phospho-acceptor) domain E3D14_15880 PF00486 Transcriptional regulatory protein, C terminal E3D14_15880 PF00072 Response regulator receiver domain E3D14_15885 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_15910 PF00072 Response regulator receiver domain E3D14_15910 PF12431 Transcriptional regulator E3D14_15915 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain E3D14_15915 PF17203 Single cache domain 3 E3D14_15915 PF00989 PAS fold E3D14_15915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_15920 PF03949 Malic enzyme, NAD binding domain E3D14_15920 PF00390 Malic enzyme, N-terminal domain E3D14_15935 PF01047 MarR family E3D14_15940 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_15940 PF00529 HlyD membrane-fusion protein of T1SS E3D14_15975 PF03477 ATP cone domain E3D14_15975 PF13597 Anaerobic ribonucleoside-triphosphate reductase E3D14_15985 PF12826 Helix-hairpin-helix motif E3D14_15985 PF03119 NAD-dependent DNA ligase C4 zinc finger domain E3D14_15985 PF00533 BRCA1 C Terminus (BRCT) domain E3D14_15985 PF03120 NAD-dependent DNA ligase OB-fold domain E3D14_15985 PF01653 NAD-dependent DNA ligase adenylation domain E3D14_15990 PF04354 ZipA, C-terminal FtsZ-binding domain E3D14_15995 PF06470 SMC proteins Flexible Hinge Domain E3D14_15995 PF02463 RecF/RecN/SMC N terminal domain E3D14_16005 PF03458 UPF0126 domain E3D14_16015 PF05951 Bacterial protein of unknown function (DUF882) E3D14_16020 PF01471 Putative peptidoglycan binding domain E3D14_16020 PF03734 L,D-transpeptidase catalytic domain E3D14_16035 PF00535 Glycosyl transferase family 2 E3D14_16050 PF00579 tRNA synthetases class I (W and Y) E3D14_16055 PF08525 Opacity-associated protein A N-terminal motif E3D14_16055 PF01476 LysM domain E3D14_16055 PF01551 Peptidase family M23 E3D14_16060 PF03702 Anhydro-N-acetylmuramic acid kinase E3D14_16065 PF01042 Endoribonuclease L-PSP E3D14_16075 PF02779 Transketolase, pyrimidine binding domain E3D14_16075 PF02780 Transketolase, C-terminal domain E3D14_16075 PF00456 Transketolase, thiamine diphosphate binding domain E3D14_16080 PF00438 S-adenosylmethionine synthetase, N-terminal domain E3D14_16080 PF02772 S-adenosylmethionine synthetase, central domain E3D14_16080 PF02773 S-adenosylmethionine synthetase, C-terminal domain E3D14_16085 PF10263 SprT-like family E3D14_16085 PF17283 SprT-like zinc ribbon domain E3D14_16090 PF04231 Endonuclease I E3D14_16095 PF04452 RNA methyltransferase E3D14_16100 PF02951 Prokaryotic glutathione synthetase, N-terminal domain E3D14_16100 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain E3D14_16110 PF02622 Uncharacterized ACR, COG1678 E3D14_16115 PF03652 Holliday junction resolvase E3D14_16120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_16120 PF03466 LysR substrate binding domain E3D14_16125 PF07690 Major Facilitator Superfamily E3D14_16130 PF00144 Beta-lactamase E3D14_16135 PF07726 ATPase family associated with various cellular activities (AAA) E3D14_16135 PF17863 AAA lid domain E3D14_16145 PF11992 Domain of unknown function (DUF3488) E3D14_16145 PF13559 Domain of unknown function (DUF4129) E3D14_16145 PF01841 Transglutaminase-like superfamily E3D14_16150 PF01235 Sodium:alanine symporter family E3D14_16155 PF00923 Transaldolase/Fructose-6-phosphate aldolase E3D14_16170 PF03167 Uracil DNA glycosylase superfamily E3D14_16185 PF01228 Glycine radical E3D14_16190 PF00375 Sodium:dicarboxylate symporter family E3D14_16195 PF00793 DAHP synthetase I family E3D14_16210 PF13847 Methyltransferase domain E3D14_16210 PF17827 PrmC N-terminal domain E3D14_16215 PF00472 RF-1 domain E3D14_16215 PF03462 PCRF domain E3D14_16220 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain E3D14_16220 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain E3D14_16220 PF01488 Shikimate / quinate 5-dehydrogenase E3D14_16225 PF03550 Outer membrane lipoprotein LolB E3D14_16230 PF00288 GHMP kinases N terminal domain E3D14_16230 PF08544 GHMP kinases C terminal E3D14_16240 PF14572 Phosphoribosyl synthetase-associated domain E3D14_16240 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase E3D14_16245 PF00149 Calcineurin-like phosphoesterase E3D14_16245 PF02872 5'-nucleotidase, C-terminal domain E3D14_16250 PF01195 Peptidyl-tRNA hydrolase E3D14_16255 PF01926 50S ribosome-binding GTPase E3D14_16255 PF06071 Protein of unknown function (DUF933) E3D14_16325 PF02080 TrkA-C domain E3D14_16325 PF03600 Citrate transporter E3D14_16330 PF04973 Nicotinamide mononucleotide transporter E3D14_16335 PF01048 Phosphorylase superfamily E3D14_16350 PF07859 alpha/beta hydrolase fold E3D14_16365 PF00012 Hsp70 protein E3D14_16375 PF00128 Alpha amylase, catalytic domain E3D14_16375 PF16657 Maltogenic Amylase, C-terminal domain E3D14_16390 PF12848 ABC transporter E3D14_16390 PF00005 ABC transporter E3D14_16395 PF07690 Major Facilitator Superfamily E3D14_16400 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D14_16400 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase E3D14_16400 PF10371 Domain of unknown function E3D14_16400 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II E3D14_16400 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg E3D14_16405 PF07690 Major Facilitator Superfamily E3D14_16410 PF13419 Haloacid dehalogenase-like hydrolase E3D14_16420 PF00171 Aldehyde dehydrogenase family E3D14_16425 PF04958 Arginine N-succinyltransferase beta subunit E3D14_16430 PF00202 Aminotransferase class-III E3D14_16435 PF00117 Glutamine amidotransferase class-I E3D14_16445 PF00579 tRNA synthetases class I (W and Y) E3D14_16450 PF13419 Haloacid dehalogenase-like hydrolase E3D14_16455 PF00834 Ribulose-phosphate 3 epimerase family E3D14_16460 PF02086 D12 class N6 adenine-specific DNA methyltransferase E3D14_16470 PF01761 3-dehydroquinate synthase E3D14_16475 PF01202 Shikimate kinase E3D14_16480 PF07660 Secretin and TonB N terminus short domain E3D14_16480 PF03958 Bacterial type II/III secretion system short domain E3D14_16480 PF00263 Bacterial type II and III secretion system protein E3D14_16480 PF11741 AMIN domain E3D14_16505 PF17092 Penicillin-binding protein OB-like domain E3D14_16505 PF00912 Transglycosylase E3D14_16505 PF00905 Penicillin binding protein transpeptidase domain E3D14_16510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_16510 PF03466 LysR substrate binding domain E3D14_16530 PF03466 LysR substrate binding domain E3D14_16530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_16545 PF01476 LysM domain E3D14_16545 PF08525 Opacity-associated protein A N-terminal motif E3D14_16545 PF01551 Peptidase family M23 E3D14_16565 PF12795 Mechanosensitive ion channel porin domain E3D14_16565 PF00924 Mechanosensitive ion channel E3D14_16565 PF12794 Mechanosensitive ion channel inner membrane domain 1 E3D14_16570 PF03009 Glycerophosphoryl diester phosphodiesterase family E3D14_16575 PF02743 Cache domain E3D14_16575 PF00672 HAMP domain E3D14_16575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_16580 PF02910 Fumarate reductase flavoprotein C-term E3D14_16580 PF00890 FAD binding domain E3D14_16585 PF13085 2Fe-2S iron-sulfur cluster binding domain E3D14_16585 PF13183 4Fe-4S dicluster domain E3D14_16590 PF02300 Fumarate reductase subunit C E3D14_16595 PF02313 Fumarate reductase subunit D E3D14_16615 PF06224 Winged helix DNA-binding domain E3D14_16630 PF00501 AMP-binding enzyme E3D14_16650 PF00486 Transcriptional regulatory protein, C terminal E3D14_16650 PF00072 Response regulator receiver domain E3D14_16655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_16655 PF00512 His Kinase A (phospho-acceptor) domain E3D14_16655 PF08521 Two-component sensor kinase N-terminal E3D14_16665 PF00478 IMP dehydrogenase / GMP reductase domain E3D14_16675 PF09285 Elongation factor P, C-terminal E3D14_16675 PF01132 Elongation factor P (EF-P) OB domain E3D14_16675 PF08207 Elongation factor P (EF-P) KOW-like domain E3D14_16685 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_16685 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D14_16705 PF13419 Haloacid dehalogenase-like hydrolase E3D14_16715 PF03466 LysR substrate binding domain E3D14_16715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_16720 PF00990 Diguanylate cyclase, GGDEF domain E3D14_16720 PF05230 MASE2 domain E3D14_16725 PF00313 'Cold-shock' DNA-binding domain E3D14_16730 PF01494 FAD binding domain E3D14_16735 PF01938 TRAM domain E3D14_16735 PF04055 Radical SAM superfamily E3D14_16735 PF00919 Uncharacterized protein family UPF0004 E3D14_16740 PF02562 PhoH-like protein E3D14_16745 PF02130 Uncharacterized protein family UPF0054 E3D14_16750 PF00571 CBS domain E3D14_16750 PF03471 Transporter associated domain E3D14_16755 PF00795 Carbon-nitrogen hydrolase E3D14_16760 PF07295 Zinc-ribbon containing domain E3D14_16765 PF13603 Leucyl-tRNA synthetase, Domain 2 E3D14_16765 PF08264 Anticodon-binding domain of tRNA E3D14_16765 PF00133 tRNA synthetases class I (I, L, M and V) E3D14_16785 PF01467 Cytidylyltransferase-like E3D14_16795 PF02590 Predicted SPOUT methyltransferase E3D14_16800 PF00905 Penicillin binding protein transpeptidase domain E3D14_16800 PF03717 Penicillin-binding Protein dimerisation domain E3D14_16805 PF01098 Cell cycle protein E3D14_16815 PF03330 Lytic transglycolase E3D14_16815 PF05036 Sporulation related domain E3D14_16820 PF00768 D-alanyl-D-alanine carboxypeptidase E3D14_16820 PF07943 Penicillin-binding protein 5, C-terminal domain E3D14_16825 PF04359 Protein of unknown function (DUF493) E3D14_16830 PF03099 Biotin/lipoate A/B protein ligase family E3D14_16835 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family E3D14_16835 PF04055 Radical SAM superfamily E3D14_16870 PF01695 IstB-like ATP binding protein E3D14_16875 PF00665 Integrase core domain E3D14_16920 PF13302 Acetyltransferase (GNAT) domain E3D14_16925 PF06821 Serine hydrolase E3D14_16930 PF02508 Rnf-Nqr subunit, membrane protein E3D14_16940 PF01368 DHH family E3D14_16940 PF17768 RecJ OB domain E3D14_16940 PF02272 DHHA1 domain E3D14_16950 PF01741 Large-conductance mechanosensitive channel, MscL E3D14_16955 PF00990 Diguanylate cyclase, GGDEF domain E3D14_16955 PF17158 Membrane-associated sensor, integral membrane domain E3D14_16960 PF02899 Phage integrase, N-terminal SAM-like domain E3D14_16960 PF00589 Phage integrase family E3D14_16965 PF00258 Flavodoxin E3D14_16970 PF01523 Putative modulator of DNA gyrase E3D14_16975 PF01523 Putative modulator of DNA gyrase E3D14_16985 PF17969 L,D-transpeptidase C-terminal domain E3D14_16985 PF03734 L,D-transpeptidase catalytic domain E3D14_16995 PF02668 Taurine catabolism dioxygenase TauD, TfdA family E3D14_17020 PF03575 Peptidase family S51 E3D14_17030 PF06476 Protein of unknown function (DUF1090) E3D14_17035 PF02635 DsrE/DsrF-like family E3D14_17040 PF00990 Diguanylate cyclase, GGDEF domain E3D14_17050 PF03725 3' exoribonuclease family, domain 2 E3D14_17050 PF01138 3' exoribonuclease family, domain 1 E3D14_17050 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain E3D14_17050 PF00013 KH domain E3D14_17050 PF00575 S1 RNA binding domain E3D14_17055 PF00312 Ribosomal protein S15 E3D14_17060 PF09157 Pseudouridine synthase II TruB, C-terminal E3D14_17060 PF01509 TruB family pseudouridylate synthase (N terminal domain) E3D14_17060 PF16198 tRNA pseudouridylate synthase B C-terminal domain E3D14_17065 PF02033 Ribosome-binding factor A E3D14_17070 PF08364 Bacterial translation initiation factor IF-2 associated region E3D14_17070 PF11987 Translation-initiation factor 2 E3D14_17070 PF00009 Elongation factor Tu GTP binding domain E3D14_17070 PF04760 Translation initiation factor IF-2, N-terminal region E3D14_17075 PF00575 S1 RNA binding domain E3D14_17075 PF13184 NusA-like KH domain E3D14_17075 PF08529 NusA N-terminal domain E3D14_17080 PF17384 RimP C-terminal SH3 domain E3D14_17080 PF02576 RimP N-terminal domain E3D14_17095 PF03840 Preprotein translocase SecG subunit E3D14_17100 PF00121 Triosephosphate isomerase E3D14_17105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II E3D14_17105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III E3D14_17105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain E3D14_17105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I E3D14_17110 PF00809 Pterin binding enzyme E3D14_17115 PF01434 Peptidase family M41 E3D14_17115 PF06480 FtsH Extracellular E3D14_17115 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_17115 PF17862 AAA+ lid domain E3D14_17120 PF01728 FtsJ-like methyltransferase E3D14_17125 PF01985 CRS1 / YhbY (CRM) domain E3D14_17135 PF03449 Transcription elongation factor, N-terminal E3D14_17135 PF01272 Transcription elongation factor, GreA/GreB, C-term E3D14_17150 PF01618 MotA/TolQ/ExbB proton channel family E3D14_17155 PF02609 Exonuclease VII small subunit E3D14_17160 PF00348 Polyprenyl synthetase E3D14_17165 PF13292 1-deoxy-D-xylulose-5-phosphate synthase E3D14_17165 PF02780 Transketolase, C-terminal domain E3D14_17165 PF02779 Transketolase, pyrimidine binding domain E3D14_17170 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_17170 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_17180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_17185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_17185 PF00005 ABC transporter E3D14_17190 PF04608 Phosphatidylglycerophosphatase A E3D14_17195 PF02769 AIR synthase related protein, C-terminal domain E3D14_17195 PF00586 AIR synthase related protein, N-terminal domain E3D14_17200 PF01029 NusB family E3D14_17205 PF00885 6,7-dimethyl-8-ribityllumazine synthase E3D14_17210 PF00925 GTP cyclohydrolase II E3D14_17210 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase E3D14_17215 PF00677 Lumazine binding domain E3D14_17220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region E3D14_17220 PF01872 RibD C-terminal domain E3D14_17225 PF03477 ATP cone domain E3D14_17240 PF00464 Serine hydroxymethyltransferase E3D14_17260 PF02613 Nitrate reductase delta subunit E3D14_17280 PF00990 Diguanylate cyclase, GGDEF domain E3D14_17280 PF00563 EAL domain E3D14_17280 PF03707 Bacterial signalling protein N terminal repeat E3D14_17290 PF16177 Acetyl-coenzyme A synthetase N-terminus E3D14_17290 PF13193 AMP-binding enzyme C-terminal domain E3D14_17290 PF00501 AMP-binding enzyme E3D14_17295 PF01220 Dehydroquinase class II E3D14_17300 PF00364 Biotin-requiring enzyme E3D14_17305 PF00289 Biotin carboxylase, N-terminal domain E3D14_17305 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain E3D14_17305 PF02785 Biotin carboxylase C-terminal domain E3D14_17310 PF06196 Protein of unknown function (DUF997) E3D14_17315 PF00474 Sodium:solute symporter family E3D14_17320 PF02378 Phosphotransferase system, EIIC E3D14_17320 PF00367 phosphotransferase system, EIIB E3D14_17320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 E3D14_17325 PF03466 LysR substrate binding domain E3D14_17325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_17330 PF08240 Alcohol dehydrogenase GroES-like domain E3D14_17330 PF00107 Zinc-binding dehydrogenase E3D14_17345 PF06751 Ethanolamine ammonia lyase large subunit (EutB) E3D14_17350 PF05985 Ethanolamine ammonia-lyase light chain (EutC) E3D14_17355 PF01842 ACT domain E3D14_17355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_17355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D14_17360 PF12464 Maltose acetyltransferase E3D14_17360 PF14602 Hexapeptide repeat of succinyl-transferase E3D14_17370 PF00881 Nitroreductase family E3D14_17375 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_17375 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3D14_17380 PF01343 Peptidase family S49 E3D14_17395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3D14_17395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3D14_17400 PF07023 Protein of unknown function (DUF1315) E3D14_17405 PF00710 Asparaginase, N-terminal E3D14_17405 PF17763 Glutaminase/Asparaginase C-terminal domain E3D14_17410 PF03616 Sodium/glutamate symporter E3D14_17415 PF02743 Cache domain E3D14_17415 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_17415 PF00672 HAMP domain E3D14_17425 PF00152 tRNA synthetases class II (D, K and N) E3D14_17425 PF01336 OB-fold nucleic acid binding domain E3D14_17430 PF02567 Phenazine biosynthesis-like protein E3D14_17445 PF01507 Phosphoadenosine phosphosulfate reductase family E3D14_17450 PF04069 Substrate binding domain of ABC-type glycine betaine transport system E3D14_17455 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_17460 PF00571 CBS domain E3D14_17460 PF00005 ABC transporter E3D14_17465 PF00186 Dihydrofolate reductase E3D14_17470 PF12821 Threonine/Serine exporter, ThrE E3D14_17475 PF06738 Putative threonine/serine exporter E3D14_17485 PF00994 Probable molybdopterin binding domain E3D14_17495 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_17495 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_17510 PF00109 Beta-ketoacyl synthase, N-terminal domain E3D14_17510 PF02801 Beta-ketoacyl synthase, C-terminal domain E3D14_17535 PF00221 Aromatic amino acid lyase E3D14_17545 PF07977 FabA-like domain E3D14_17550 PF00501 AMP-binding enzyme E3D14_17550 PF13193 AMP-binding enzyme C-terminal domain E3D14_17560 PF00550 Phosphopantetheine attachment site E3D14_17565 PF00550 Phosphopantetheine attachment site E3D14_17600 PF00034 Cytochrome c E3D14_17600 PF03150 Di-haem cytochrome c peroxidase E3D14_17605 PF00194 Eukaryotic-type carbonic anhydrase E3D14_17610 PF04227 Indigoidine synthase A like protein E3D14_17615 PF00294 pfkB family carbohydrate kinase E3D14_17635 PF00582 Universal stress protein family E3D14_17645 PF00171 Aldehyde dehydrogenase family E3D14_17650 PF00696 Amino acid kinase family E3D14_17650 PF01472 PUA domain E3D14_17655 PF07417 Sigma factor-binding transcriptional regulator Crl E3D14_17665 PF00156 Phosphoribosyl transferase domain E3D14_17680 PF01546 Peptidase family M20/M25/M40 E3D14_17680 PF07687 Peptidase dimerisation domain E3D14_17690 PF00005 ABC transporter E3D14_17690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_17695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region E3D14_17695 PF00005 ABC transporter E3D14_17700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle E3D14_17705 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_17705 PF12911 N-terminal TM domain of oligopeptide transport permease C E3D14_17715 PF00593 TonB dependent receptor E3D14_17715 PF07715 TonB-dependent Receptor Plug Domain E3D14_17725 PF01618 MotA/TolQ/ExbB proton channel family E3D14_17730 PF01618 MotA/TolQ/ExbB proton channel family E3D14_17735 PF02472 Biopolymer transport protein ExbD/TolR E3D14_17750 PF00704 Glycosyl hydrolases family 18 E3D14_17750 PF06483 Chitinase C E3D14_17780 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3D14_17785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_17785 PF00672 HAMP domain E3D14_17795 PF00313 'Cold-shock' DNA-binding domain E3D14_17825 PF00929 Exonuclease E3D14_17830 PF03193 RsgA GTPase E3D14_17835 PF02666 Phosphatidylserine decarboxylase E3D14_17840 PF09905 DNA-binding protein VF530 E3D14_17860 PF00990 Diguanylate cyclase, GGDEF domain E3D14_17860 PF00563 EAL domain E3D14_17860 PF03707 Bacterial signalling protein N terminal repeat E3D14_17865 PF06877 Regulator of ribonuclease activity B E3D14_17870 PF05547 Immune inhibitor A peptidase M6 E3D14_17870 PF00801 PKD domain E3D14_17900 PF00171 Aldehyde dehydrogenase family E3D14_17910 PF00561 alpha/beta hydrolase fold E3D14_17915 PF00664 ABC transporter transmembrane region E3D14_17915 PF00005 ABC transporter E3D14_17920 PF06004 Bacterial protein of unknown function (DUF903) E3D14_17925 PF00581 Rhodanese-like domain E3D14_17930 PF04960 Glutaminase E3D14_17935 PF04320 Protein with unknown function (DUF469) E3D14_17940 PF02390 Putative methyltransferase E3D14_17955 PF00563 EAL domain E3D14_17955 PF12792 CSS motif domain associated with EAL E3D14_17960 PF08338 Domain of unknown function (DUF1731) E3D14_17960 PF01370 NAD dependent epimerase/dehydratase family E3D14_17970 PF00005 ABC transporter E3D14_17975 PF13472 GDSL-like Lipase/Acylhydrolase family E3D14_17980 PF01584 CheW-like domain E3D14_17980 PF00072 Response regulator receiver domain E3D14_17990 PF02080 TrkA-C domain E3D14_17990 PF06826 Predicted Permease Membrane Region E3D14_17995 PF03006 Haemolysin-III related E3D14_18000 PF00282 Pyridoxal-dependent decarboxylase conserved domain E3D14_18005 PF04279 Intracellular septation protein A E3D14_18010 PF03795 YCII-related domain E3D14_18015 PF00459 Inositol monophosphatase family E3D14_18025 PF00483 Nucleotidyl transferase E3D14_18030 PF00854 POT family E3D14_18035 PF00072 Response regulator receiver domain E3D14_18065 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion E3D14_18070 PF02321 Outer membrane efflux protein E3D14_18075 PF01207 Dihydrouridine synthase (Dus) E3D14_18080 PF02954 Bacterial regulatory protein, Fis family E3D14_18085 PF01810 LysE type translocator E3D14_18115 PF01521 Iron-sulphur cluster biosynthesis E3D14_18125 PF00654 Voltage gated chloride channel E3D14_18130 PF00202 Aminotransferase class-III E3D14_18145 PF01569 PAP2 superfamily E3D14_18155 PF11849 Domain of unknown function (DUF3369) E3D14_18160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_18160 PF03466 LysR substrate binding domain E3D14_18165 PF00893 Small Multidrug Resistance protein E3D14_18170 PF00893 Small Multidrug Resistance protein E3D14_18175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily E3D14_18180 PF00912 Transglycosylase E3D14_18180 PF00905 Penicillin binding protein transpeptidase domain E3D14_18180 PF14814 Bifunctional transglycosylase second domain E3D14_18185 PF08482 ATP-dependent helicase C-terminal E3D14_18185 PF00270 DEAD/DEAH box helicase E3D14_18185 PF04408 Helicase associated domain (HA2) E3D14_18185 PF00271 Helicase conserved C-terminal domain E3D14_18195 PF03749 Sugar fermentation stimulation protein RE domain E3D14_18195 PF17746 SfsA N-terminal OB domain E3D14_18200 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3D14_18205 PF00749 tRNA synthetases class I (E and Q), catalytic domain E3D14_18210 PF12627 Probable RNA and SrmB- binding site of polymerase A E3D14_18210 PF12626 Polymerase A arginine-rich C-terminus E3D14_18210 PF01743 Poly A polymerase head domain E3D14_18215 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3D14_18220 PF02548 Ketopantoate hydroxymethyltransferase E3D14_18225 PF02569 Pantoate-beta-alanine ligase E3D14_18235 PF01061 ABC-2 type transporter E3D14_18240 PF00005 ABC transporter E3D14_18245 PF00156 Phosphoribosyl transferase domain E3D14_18250 PF00440 Bacterial regulatory proteins, tetR family E3D14_18255 PF02441 Flavoprotein E3D14_18260 PF01225 Mur ligase family, catalytic domain E3D14_18260 PF08245 Mur ligase middle domain E3D14_18260 PF02875 Mur ligase family, glutamate ligase domain E3D14_18265 PF00719 Inorganic pyrophosphatase E3D14_18270 PF01208 Uroporphyrinogen decarboxylase (URO-D) E3D14_18275 PF00293 NUDIX domain E3D14_18275 PF09297 NADH pyrophosphatase zinc ribbon domain E3D14_18280 PF18327 Proline utilization A proline dehydrogenase N-terminal domain E3D14_18280 PF01619 Proline dehydrogenase E3D14_18280 PF14850 DNA-binding domain of Proline dehydrogenase E3D14_18280 PF00171 Aldehyde dehydrogenase family E3D14_18285 PF08239 Bacterial SH3 domain E3D14_18290 PF00027 Cyclic nucleotide-binding domain E3D14_18290 PF07885 Ion channel E3D14_18300 PF01641 SelR domain E3D14_18305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3D14_18305 PF00128 Alpha amylase, catalytic domain E3D14_18310 PF00128 Alpha amylase, catalytic domain E3D14_18310 PF02806 Alpha amylase, C-terminal all-beta domain E3D14_18310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3D14_18315 PF02446 4-alpha-glucanotransferase E3D14_18320 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain E3D14_18320 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain E3D14_18325 PF01263 Aldose 1-epimerase E3D14_18330 PF02445 Quinolinate synthetase A protein E3D14_18400 PF16331 TolA binding protein trimerisation E3D14_18400 PF13174 Tetratricopeptide repeat E3D14_18405 PF00691 OmpA family E3D14_18410 PF04052 TolB amino-terminal domain E3D14_18410 PF07676 WD40-like Beta Propeller Repeat E3D14_18420 PF02472 Biopolymer transport protein ExbD/TolR E3D14_18425 PF01618 MotA/TolQ/ExbB proton channel family E3D14_18430 PF03061 Thioesterase superfamily E3D14_18435 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) E3D14_18440 PF08173 Membrane bound YbgT-like protein E3D14_18445 PF02322 Cytochrome bd terminal oxidase subunit II E3D14_18450 PF01654 Cytochrome bd terminal oxidase subunit I E3D14_18455 PF17864 RuvB AAA lid domain E3D14_18455 PF05491 RuvB C-terminal winged helix domain E3D14_18455 PF05496 Holliday junction DNA helicase RuvB P-loop domain E3D14_18460 PF07499 RuvA, C-terminal domain E3D14_18460 PF01330 RuvA N terminal domain E3D14_18465 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_18465 PF00672 HAMP domain E3D14_18470 PF04073 Aminoacyl-tRNA editing domain E3D14_18470 PF03129 Anticodon binding domain E3D14_18470 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) E3D14_18480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family E3D14_18490 PF03144 Elongation factor Tu domain 2 E3D14_18490 PF16658 Class II release factor RF3, C-terminal domain E3D14_18490 PF00009 Elongation factor Tu GTP binding domain E3D14_18495 PF00990 Diguanylate cyclase, GGDEF domain E3D14_18495 PF00072 Response regulator receiver domain E3D14_18505 PF01037 Lrp/AsnC ligand binding domain E3D14_18515 PF05762 VWA domain containing CoxE-like protein E3D14_18520 PF12592 Protein of unknown function (DUF3763) E3D14_18520 PF17868 AAA lid domain E3D14_18520 PF07728 AAA domain (dynein-related subfamily) E3D14_18530 PF13673 Acetyltransferase (GNAT) domain E3D14_18530 PF00583 Acetyltransferase (GNAT) family E3D14_18540 PF00501 AMP-binding enzyme E3D14_18550 PF04262 Glutamate-cysteine ligase E3D14_18555 PF05193 Peptidase M16 inactive domain E3D14_18555 PF00675 Insulinase (Peptidase family M16) E3D14_18560 PF09335 SNARE associated Golgi protein E3D14_18565 PF08240 Alcohol dehydrogenase GroES-like domain E3D14_18565 PF00107 Zinc-binding dehydrogenase E3D14_18590 PF00175 Oxidoreductase NAD-binding domain E3D14_18590 PF00970 Oxidoreductase FAD-binding domain E3D14_18595 PF01281 Ribosomal protein L9, N-terminal domain E3D14_18595 PF03948 Ribosomal protein L9, C-terminal domain E3D14_18600 PF01084 Ribosomal protein S18 E3D14_18605 PF01250 Ribosomal protein S6 E3D14_18610 PF01566 Natural resistance-associated macrophage protein E3D14_18630 PF13673 Acetyltransferase (GNAT) domain E3D14_18640 PF00588 SpoU rRNA Methylase family E3D14_18640 PF08032 RNA 2'-O ribose methyltransferase substrate binding E3D14_18645 PF08206 Ribonuclease B OB domain E3D14_18645 PF00575 S1 RNA binding domain E3D14_18645 PF17876 Cold shock domain E3D14_18645 PF00773 RNB domain E3D14_18645 PF08461 Ribonuclease R winged-helix domain E3D14_18650 PF00990 Diguanylate cyclase, GGDEF domain E3D14_18655 PF02664 S-Ribosylhomocysteinase (LuxS) E3D14_18665 PF00543 Nitrogen regulatory protein P-II E3D14_18670 PF02540 NAD synthase E3D14_18670 PF00795 Carbon-nitrogen hydrolase E3D14_18685 PF05567 Neisseria PilC beta-propeller domain E3D14_18705 PF07963 Prokaryotic N-terminal methylation motif E3D14_18705 PF14245 Type IV pilin PilA E3D14_18710 PF02401 LytB protein E3D14_18715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase E3D14_18720 PF01252 Signal peptidase (SPase) II E3D14_18725 PF08264 Anticodon-binding domain of tRNA E3D14_18725 PF00133 tRNA synthetases class I (I, L, M and V) E3D14_18725 PF06827 Zinc finger found in FPG and IleRS E3D14_18730 PF06574 FAD synthetase E3D14_18730 PF01687 Riboflavin kinase E3D14_18735 PF03023 Lipid II flippase MurJ E3D14_18740 PF01649 Ribosomal protein S20 E3D14_18745 PF01022 Bacterial regulatory protein, arsR family E3D14_18750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_18750 PF03466 LysR substrate binding domain E3D14_18760 PF06965 Na+/H+ antiporter 1 E3D14_18765 PF00303 Thymidylate synthase E3D14_18770 PF01790 Prolipoprotein diacylglyceryl transferase E3D14_18775 PF05524 PEP-utilising enzyme, N-terminal E3D14_18775 PF00391 PEP-utilising enzyme, mobile domain E3D14_18775 PF02896 PEP-utilising enzyme, TIM barrel domain E3D14_18775 PF01590 GAF domain E3D14_18780 PF00293 NUDIX domain E3D14_18785 PF02976 DNA mismatch repair enzyme MutH E3D14_18795 PF01245 Ribosomal protein L19 E3D14_18800 PF01746 tRNA (Guanine-1)-methyltransferase E3D14_18805 PF01782 RimM N-terminal domain E3D14_18805 PF05239 PRC-barrel domain E3D14_18810 PF00886 Ribosomal protein S16 E3D14_18815 PF02881 SRP54-type protein, helical bundle domain E3D14_18815 PF00448 SRP54-type protein, GTPase domain E3D14_18815 PF02978 Signal peptide binding domain E3D14_18820 PF01578 Cytochrome C assembly protein E3D14_18825 PF00571 CBS domain E3D14_18825 PF03471 Transporter associated domain E3D14_18825 PF01595 Cyclin M transmembrane N-terminal domain E3D14_18830 PF02082 Transcriptional regulator E3D14_18835 PF00175 Oxidoreductase NAD-binding domain E3D14_18835 PF00042 Globin E3D14_18835 PF00970 Oxidoreductase FAD-binding domain E3D14_18840 PF08238 Sel1 repeat E3D14_18845 PF00056 lactate/malate dehydrogenase, NAD binding domain E3D14_18845 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain E3D14_18850 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_18855 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_18860 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_18865 PF00005 ABC transporter E3D14_18870 PF02863 Arginine repressor, C-terminal domain E3D14_18870 PF01316 Arginine repressor, DNA binding domain E3D14_18875 PF04261 Dyp-type peroxidase family E3D14_18880 PF00005 ABC transporter E3D14_18880 PF08402 TOBE domain E3D14_18890 PF13416 Bacterial extracellular solute-binding protein E3D14_18895 PF00543 Nitrogen regulatory protein P-II E3D14_18900 PF00472 RF-1 domain E3D14_18905 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain E3D14_18905 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain E3D14_18910 PF01773 Na+ dependent nucleoside transporter N-terminus E3D14_18910 PF07662 Na+ dependent nucleoside transporter C-terminus E3D14_18910 PF07670 Nucleoside recognition E3D14_18915 PF03466 LysR substrate binding domain E3D14_18915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_18920 PF00255 Glutathione peroxidase E3D14_18930 PF02595 Glycerate kinase family E3D14_18935 PF02447 GntP family permease E3D14_18935 PF02447 GntP family permease E3D14_18940 PF05651 Putative sugar diacid recognition E3D14_18940 PF17853 GGDEF-like domain E3D14_18940 PF13556 PucR C-terminal helix-turn-helix domain E3D14_18945 PF06062 Uncharacterised protein family (UPF0231) E3D14_18960 PF08447 PAS fold E3D14_18960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_18965 PF03372 Endonuclease/Exonuclease/phosphatase family E3D14_18980 PF00270 DEAD/DEAH box helicase E3D14_18980 PF00271 Helicase conserved C-terminal domain E3D14_18990 PF08534 Redoxin E3D14_18995 PF00403 Heavy-metal-associated domain E3D14_19000 PF11852 Domain of unknown function (DUF3372) E3D14_19000 PF17967 Pullulanase N2 domain E3D14_19000 PF03714 Bacterial pullanase-associated domain E3D14_19000 PF18494 Pullulanase Ins domain E3D14_19000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) E3D14_19015 PF02583 Metal-sensitive transcriptional repressor E3D14_19020 PF00155 Aminotransferase class I and II E3D14_19025 PF03466 LysR substrate binding domain E3D14_19025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_19035 PF04055 Radical SAM superfamily E3D14_19040 PF11230 Protein of unknown function (DUF3029) E3D14_19075 PF00535 Glycosyl transferase family 2 E3D14_19115 PF17200 Single Cache domain 2 E3D14_19115 PF00672 HAMP domain E3D14_19115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_19120 PF18416 N-acetylglucosamine binding protein domain 2 E3D14_19120 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading E3D14_19125 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_19130 PF00005 ABC transporter E3D14_19135 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_19140 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_19145 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_19150 PF03466 LysR substrate binding domain E3D14_19150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_19155 PF12857 TOBE-like domain E3D14_19155 PF00005 ABC transporter E3D14_19160 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_19165 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_19180 PF13194 Domain of unknown function (DUF4010) E3D14_19185 PF12464 Maltose acetyltransferase E3D14_19185 PF14602 Hexapeptide repeat of succinyl-transferase E3D14_19215 PF14552 Tautomerase enzyme E3D14_19225 PF03466 LysR substrate binding domain E3D14_19225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_19230 PF00206 Lyase E3D14_19230 PF14698 Argininosuccinate lyase C-terminal E3D14_19235 PF00764 Arginosuccinate synthase E3D14_19240 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3D14_19240 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3D14_19245 PF00696 Amino acid kinase family E3D14_19250 PF01118 Semialdehyde dehydrogenase, NAD binding domain E3D14_19250 PF02774 Semialdehyde dehydrogenase, dimerisation domain E3D14_19255 PF07687 Peptidase dimerisation domain E3D14_19255 PF01546 Peptidase family M20/M25/M40 E3D14_19260 PF00311 Phosphoenolpyruvate carboxylase E3D14_19280 PF03960 ArsC family E3D14_19285 PF01758 Sodium Bile acid symporter family E3D14_19295 PF06953 Arsenical resistance operon trans-acting repressor ArsD E3D14_19305 PF00488 MutS domain V E3D14_19305 PF01624 MutS domain I E3D14_19305 PF05192 MutS domain III E3D14_19305 PF05190 MutS family domain IV E3D14_19305 PF05188 MutS domain II E3D14_19310 PF02028 BCCT, betaine/carnitine/choline family transporter E3D14_19325 PF04222 Protein of unknown function (DUF416) E3D14_19330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_19335 PF01476 LysM domain E3D14_19335 PF08525 Opacity-associated protein A N-terminal motif E3D14_19335 PF01551 Peptidase family M23 E3D14_19355 PF01297 Zinc-uptake complex component A periplasmic E3D14_19360 PF00005 ABC transporter E3D14_19365 PF00950 ABC 3 transport family E3D14_19370 PF03466 LysR substrate binding domain E3D14_19370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_19380 PF03167 Uracil DNA glycosylase superfamily E3D14_19385 PF00892 EamA-like transporter family E3D14_19395 PF01541 GIY-YIG catalytic domain E3D14_19410 PF04012 PspA/IM30 family E3D14_19415 PF01553 Acyltransferase E3D14_19435 PF00085 Thioredoxin E3D14_19440 PF07681 DoxX E3D14_19445 PF00226 DnaJ domain E3D14_19445 PF00684 DnaJ central domain E3D14_19445 PF01556 DnaJ C terminal domain E3D14_19480 PF00521 DNA gyrase/topoisomerase IV, subunit A E3D14_19480 PF03989 DNA gyrase C-terminal domain, beta-propeller E3D14_19485 PF00986 DNA gyrase B subunit, carboxyl terminus E3D14_19485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_19485 PF01751 Toprim domain E3D14_19485 PF00204 DNA gyrase B E3D14_19495 PF00293 NUDIX domain E3D14_19500 PF05728 Uncharacterised protein family (UPF0227) E3D14_19505 PF00149 Calcineurin-like phosphoesterase E3D14_19510 PF06853 Protein of unknown function (DUF1249) E3D14_19520 PF00293 NUDIX domain E3D14_19530 PF02321 Outer membrane efflux protein E3D14_19535 PF00294 pfkB family carbohydrate kinase E3D14_19535 PF01467 Cytidylyltransferase-like E3D14_19540 PF03279 Bacterial lipid A biosynthesis acyltransferase E3D14_19555 PF01865 Protein of unknown function DUF47 E3D14_19560 PF01384 Phosphate transporter family E3D14_19565 PF01966 HD domain E3D14_19565 PF12627 Probable RNA and SrmB- binding site of polymerase A E3D14_19565 PF01743 Poly A polymerase head domain E3D14_19570 PF01471 Putative peptidoglycan binding domain E3D14_19570 PF13401 AAA domain E3D14_19575 PF16537 Type II secretion system protein B E3D14_19580 PF14815 NUDIX domain E3D14_19580 PF00730 HhH-GPD superfamily base excision DNA repair protein E3D14_19580 PF00633 Helix-hairpin-helix motif E3D14_19580 PF10576 Iron-sulfur binding domain of endonuclease III E3D14_19585 PF04362 Bacterial Fe(2+) trafficking E3D14_19590 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain E3D14_19590 PF01464 Transglycosylase SLT domain E3D14_19595 PF04076 Bacterial OB fold (BOF) protein E3D14_19600 PF00657 GDSL-like Lipase/Acylhydrolase E3D14_19610 PF01389 OmpA-like transmembrane domain E3D14_19610 PF00691 OmpA family E3D14_19615 PF03886 ABC-type transport auxiliary lipoprotein component E3D14_19620 PF02470 MlaD protein E3D14_19625 PF04403 Paraquat-inducible protein A E3D14_19630 PF17209 Hfq protein E3D14_19635 PF13419 Haloacid dehalogenase-like hydrolase E3D14_19650 PF00701 Dihydrodipicolinate synthetase family E3D14_19655 PF08468 Methyltransferase small domain N-terminal E3D14_19655 PF05175 Methyltransferase small domain E3D14_19660 PF00483 Nucleotidyl transferase E3D14_19665 PF00534 Glycosyl transferases group 1 E3D14_19665 PF08323 Starch synthase catalytic domain E3D14_19705 PF03553 Na+/H+ antiporter family E3D14_19715 PF14602 Hexapeptide repeat of succinyl-transferase E3D14_19715 PF12464 Maltose acetyltransferase E3D14_19720 PF00128 Alpha amylase, catalytic domain E3D14_19720 PF11941 Domain of unknown function (DUF3459) E3D14_19730 PF00356 Bacterial regulatory proteins, lacI family E3D14_19740 PF02378 Phosphotransferase system, EIIC E3D14_19745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit E3D14_19750 PF02378 Phosphotransferase system, EIIC E3D14_19755 PF00232 Glycosyl hydrolase family 1 E3D14_19760 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit E3D14_19765 PF00480 ROK family E3D14_19775 PF00356 Bacterial regulatory proteins, lacI family E3D14_19785 PF17763 Glutaminase/Asparaginase C-terminal domain E3D14_19785 PF00710 Asparaginase, N-terminal E3D14_19800 PF02142 MGS-like domain E3D14_19810 PF00210 Ferritin-like domain E3D14_19825 PF13718 GNAT acetyltransferase 2 E3D14_19825 PF17176 tRNA-binding domain E3D14_19825 PF08351 Domain of unknown function (DUF1726) E3D14_19825 PF05127 Helicase E3D14_19830 PF00106 short chain dehydrogenase E3D14_19835 PF00072 Response regulator receiver domain E3D14_19835 PF01584 CheW-like domain E3D14_19955 PF02660 Glycerol-3-phosphate acyltransferase E3D14_19960 PF02152 Dihydroneopterin aldolase E3D14_19965 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) E3D14_19975 PF07690 Major Facilitator Superfamily E3D14_19980 PF07683 Cobalamin synthesis protein cobW C-terminal domain E3D14_19980 PF02492 CobW/HypB/UreG, nucleotide-binding domain E3D14_19990 PF01810 LysE type translocator E3D14_19995 PF03466 LysR substrate binding domain E3D14_19995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_20000 PF03466 LysR substrate binding domain E3D14_20000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_20010 PF00563 EAL domain E3D14_20010 PF12792 CSS motif domain associated with EAL E3D14_20015 PF06434 Aconitate hydratase 2 N-terminus E3D14_20015 PF11791 Aconitate B N-terminal domain E3D14_20015 PF00330 Aconitase family (aconitate hydratase) E3D14_20030 PF00672 HAMP domain E3D14_20030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_20030 PF12729 Four helix bundle sensory module for signal transduction E3D14_20040 PF13426 PAS domain E3D14_20040 PF08448 PAS fold E3D14_20040 PF00990 Diguanylate cyclase, GGDEF domain E3D14_20040 PF05231 MASE1 E3D14_20040 PF00563 EAL domain E3D14_20040 PF08447 PAS fold E3D14_20045 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D14_20045 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_20050 PF00364 Biotin-requiring enzyme E3D14_20050 PF02817 e3 binding domain E3D14_20050 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) E3D14_20055 PF00456 Transketolase, thiamine diphosphate binding domain E3D14_20055 PF17831 Pyruvate dehydrogenase E1 component middle domain E3D14_20060 PF00392 Bacterial regulatory proteins, gntR family E3D14_20060 PF07729 FCD domain E3D14_20065 PF01510 N-acetylmuramoyl-L-alanine amidase E3D14_20075 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain E3D14_20075 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain E3D14_20080 PF07963 Prokaryotic N-terminal methylation motif E3D14_20085 PF00437 Type II/IV secretion system protein E3D14_20085 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain E3D14_20095 PF06750 Bacterial Peptidase A24 N-terminal domain E3D14_20095 PF01478 Type IV leader peptidase family E3D14_20100 PF01121 Dephospho-CoA kinase E3D14_20105 PF07072 Cell division protein E3D14_20110 PF03884 DNA gyrase inhibitor YacG E3D14_20115 PF00293 NUDIX domain E3D14_20125 PF02810 SEC-C motif E3D14_20125 PF07517 SecA DEAD-like domain E3D14_20125 PF01043 SecA preprotein cross-linking domain E3D14_20125 PF07516 SecA Wing and Scaffold domain E3D14_20135 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase E3D14_20140 PF00091 Tubulin/FtsZ family, GTPase domain E3D14_20140 PF12327 FtsZ family, C-terminal domain E3D14_20145 PF02491 SHS2 domain inserted in FTSA E3D14_20150 PF08478 POTRA domain, FtsQ-type E3D14_20150 PF03799 Cell division protein FtsQ E3D14_20155 PF08245 Mur ligase middle domain E3D14_20155 PF02875 Mur ligase family, glutamate ligase domain E3D14_20155 PF01225 Mur ligase family, catalytic domain E3D14_20160 PF03033 Glycosyltransferase family 28 N-terminal domain E3D14_20160 PF04101 Glycosyltransferase family 28 C-terminal domain E3D14_20165 PF01098 Cell cycle protein E3D14_20170 PF02875 Mur ligase family, glutamate ligase domain E3D14_20170 PF08245 Mur ligase middle domain E3D14_20175 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 E3D14_20175 PF00953 Glycosyl transferase family 4 E3D14_20180 PF02875 Mur ligase family, glutamate ligase domain E3D14_20180 PF08245 Mur ligase middle domain E3D14_20180 PF01225 Mur ligase family, catalytic domain E3D14_20185 PF01225 Mur ligase family, catalytic domain E3D14_20185 PF02875 Mur ligase family, glutamate ligase domain E3D14_20185 PF08245 Mur ligase middle domain E3D14_20190 PF00905 Penicillin binding protein transpeptidase domain E3D14_20190 PF03717 Penicillin-binding Protein dimerisation domain E3D14_20195 PF04999 Cell division protein FtsL E3D14_20200 PF01795 MraW methylase family E3D14_20205 PF02381 MraZ protein, putative antitoxin-like E3D14_20215 PF01464 Transglycosylase SLT domain E3D14_20215 PF01476 LysM domain E3D14_20225 PF13677 Membrane MotB of proton-channel complex MotA/MotB E3D14_20225 PF00691 OmpA family E3D14_20230 PF01618 MotA/TolQ/ExbB proton channel family E3D14_20235 PF04545 Sigma-70, region 4 E3D14_20235 PF04542 Sigma-70 region 2 E3D14_20255 PF02561 Flagellar protein FliS E3D14_20260 PF07196 Flagellin hook IN motif E3D14_20260 PF07195 Flagellar hook-associated protein 2 C-terminus E3D14_20260 PF02465 Flagellar hook-associated protein 2 N-terminus E3D14_20275 PF00669 Bacterial flagellin N-terminal helical region E3D14_20275 PF00700 Bacterial flagellin C-terminal helical region E3D14_20295 PF00460 Flagella basal body rod protein E3D14_20295 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_20305 PF02119 Flagellar P-ring protein E3D14_20310 PF02107 Flagellar L-ring protein E3D14_20315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_20315 PF00460 Flagella basal body rod protein E3D14_20320 PF00460 Flagella basal body rod protein E3D14_20320 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_20325 PF07559 Flagellar basal body protein FlaE E3D14_20325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_20325 PF00460 Flagella basal body rod protein E3D14_20335 PF06429 Flagellar basal body rod FlgEFG protein C-terminal E3D14_20335 PF00460 Flagella basal body rod protein E3D14_20340 PF00460 Flagella basal body rod protein E3D14_20350 PF04316 Anti-sigma-28 factor, FlgM E3D14_20365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_20365 PF18269 T3SS EscN ATPase C-terminal domain E3D14_20375 PF14842 FliG N-terminal domain E3D14_20375 PF14841 FliG middle domain E3D14_20375 PF01706 FliG C-terminal domain E3D14_20380 PF01514 Secretory protein of YscJ/FliF family E3D14_20380 PF08345 Flagellar M-ring protein C-terminal E3D14_20385 PF02049 Flagellar hook-basal body complex protein FliE E3D14_20390 PF02954 Bacterial regulatory protein, Fis family E3D14_20390 PF00158 Sigma-54 interaction domain E3D14_20390 PF00072 Response regulator receiver domain E3D14_20395 PF00771 FHIPEP family E3D14_20400 PF01312 FlhB HrpN YscU SpaS Family E3D14_20405 PF01311 Bacterial export proteins, family 1 E3D14_20410 PF01313 Bacterial export proteins, family 3 E3D14_20415 PF00813 FliP family E3D14_20420 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D14_20435 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D14_20440 PF04348 LppC putative lipoprotein E3D14_20450 PF13580 SIS domain E3D14_20455 PF04972 BON domain E3D14_20460 PF04386 Stringent starvation protein B E3D14_20465 PF02798 Glutathione S-transferase, N-terminal domain E3D14_20465 PF00043 Glutathione S-transferase, C-terminal domain E3D14_20470 PF02167 Cytochrome C1 family E3D14_20475 PF00033 Cytochrome b/b6/petB E3D14_20475 PF00032 Cytochrome b(C-terminal)/b6/petD E3D14_20480 PF00355 Rieske [2Fe-2S] domain E3D14_20480 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal E3D14_20485 PF00380 Ribosomal protein S9/S16 E3D14_20490 PF00572 Ribosomal protein L13 E3D14_20495 PF03969 AFG1-like ATPase E3D14_20505 PF00595 PDZ domain E3D14_20505 PF13180 PDZ domain E3D14_20510 PF13180 PDZ domain E3D14_20545 PF01979 Amidohydrolase family E3D14_20550 PF03841 L-seryl-tRNA selenium transferase E3D14_20555 PF07071 KDGP aldolase E3D14_20565 PF00381 PTS HPr component phosphorylation site E3D14_20570 PF03668 P-loop ATPase protein family E3D14_20575 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 E3D14_20580 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein E3D14_20585 PF00309 Sigma-54 factor, Activator interacting domain (AID) E3D14_20585 PF04963 Sigma-54 factor, core binding domain E3D14_20585 PF04552 Sigma-54, DNA binding domain E3D14_20590 PF00005 ABC transporter E3D14_20590 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3D14_20595 PF03968 OstA-like protein E3D14_20600 PF06835 Lipopolysaccharide-assembly, LptC-related E3D14_20610 PF00571 CBS domain E3D14_20610 PF01380 SIS domain E3D14_20615 PF00005 ABC transporter E3D14_20620 PF02405 Permease MlaE E3D14_20625 PF02470 MlaD protein E3D14_20630 PF05494 MlaC protein E3D14_20640 PF01722 BolA-like protein E3D14_20645 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) E3D14_20650 PF01523 Putative modulator of DNA gyrase E3D14_20655 PF04751 Protein of unknown function (DUF615) E3D14_20665 PF04363 Protein of unknown function (DUF496) E3D14_20695 PF03143 Elongation factor Tu C-terminal domain E3D14_20695 PF03144 Elongation factor Tu domain 2 E3D14_20695 PF00009 Elongation factor Tu GTP binding domain E3D14_20700 PF00679 Elongation factor G C-terminus E3D14_20700 PF14492 Elongation Factor G, domain II E3D14_20700 PF03764 Elongation factor G, domain IV E3D14_20700 PF00009 Elongation factor Tu GTP binding domain E3D14_20700 PF03144 Elongation factor Tu domain 2 E3D14_20705 PF00177 Ribosomal protein S7p/S5e E3D14_20710 PF00164 Ribosomal protein S12/S23 E3D14_20715 PF04077 DsrH like protein E3D14_20720 PF02635 DsrE/DsrF-like family E3D14_20725 PF02635 DsrE/DsrF-like family E3D14_20730 PF01042 Endoribonuclease L-PSP E3D14_20735 PF13309 HTH domain E3D14_20735 PF08348 YheO-like PAS domain E3D14_20740 PF04997 RNA polymerase Rpb1, domain 1 E3D14_20740 PF00623 RNA polymerase Rpb1, domain 2 E3D14_20740 PF04983 RNA polymerase Rpb1, domain 3 E3D14_20740 PF04998 RNA polymerase Rpb1, domain 5 E3D14_20740 PF05000 RNA polymerase Rpb1, domain 4 E3D14_20745 PF00562 RNA polymerase Rpb2, domain 6 E3D14_20745 PF04561 RNA polymerase Rpb2, domain 2 E3D14_20745 PF04563 RNA polymerase beta subunit E3D14_20745 PF04565 RNA polymerase Rpb2, domain 3 E3D14_20745 PF04560 RNA polymerase Rpb2, domain 7 E3D14_20745 PF10385 RNA polymerase beta subunit external 1 domain E3D14_20750 PF16320 Ribosomal protein L7/L12 dimerisation domain E3D14_20750 PF00542 Ribosomal protein L7/L12 C-terminal domain E3D14_20755 PF00466 Ribosomal protein L10 E3D14_20760 PF00687 Ribosomal protein L1p/L10e family E3D14_20765 PF03946 Ribosomal protein L11, N-terminal domain E3D14_20765 PF00298 Ribosomal protein L11, RNA binding domain E3D14_20770 PF02357 Transcription termination factor nusG E3D14_20770 PF00467 KOW motif E3D14_20775 PF00584 SecE/Sec61-gamma subunits of protein translocation complex E3D14_20785 PF00009 Elongation factor Tu GTP binding domain E3D14_20785 PF03144 Elongation factor Tu domain 2 E3D14_20785 PF03143 Elongation factor Tu C-terminal domain E3D14_20800 PF00485 Phosphoribulokinase / Uridine kinase family E3D14_20805 PF02237 Biotin protein ligase C terminal domain E3D14_20805 PF08279 HTH domain E3D14_20805 PF03099 Biotin/lipoate A/B protein ligase family E3D14_20810 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain E3D14_20810 PF01565 FAD binding domain E3D14_20815 PF02254 TrkA-N domain E3D14_20815 PF02080 TrkA-C domain E3D14_20820 PF02386 Cation transport protein E3D14_20825 PF01131 DNA topoisomerase E3D14_20825 PF01751 Toprim domain E3D14_20830 PF03264 NapC/NirT cytochrome c family, N-terminal region E3D14_20835 PF18364 Molybdopterin oxidoreductase N-terminal domain E3D14_20835 PF00384 Molybdopterin oxidoreductase E3D14_20835 PF01568 Molydopterin dinucleotide binding domain E3D14_20845 PF08918 PhoQ Sensor E3D14_20845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_20850 PF00072 Response regulator receiver domain E3D14_20850 PF00486 Transcriptional regulatory protein, C terminal E3D14_20865 PF01794 Ferric reductase like transmembrane component E3D14_20870 PF00174 Oxidoreductase molybdopterin binding domain E3D14_20880 PF06496 Protein of unknown function (DUF1097) E3D14_20885 PF00072 Response regulator receiver domain E3D14_20885 PF00158 Sigma-54 interaction domain E3D14_20895 PF00512 His Kinase A (phospho-acceptor) domain E3D14_20895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_20915 PF00478 IMP dehydrogenase / GMP reductase domain E3D14_20915 PF00571 CBS domain E3D14_20930 PF01037 Lrp/AsnC ligand binding domain E3D14_20935 PF03590 Aspartate-ammonia ligase E3D14_20940 PF07724 AAA domain (Cdc48 subfamily) E3D14_20940 PF17871 AAA lid domain E3D14_20940 PF02861 Clp amino terminal domain, pathogenicity island component E3D14_20940 PF10431 C-terminal, D2-small domain, of ClpB protein E3D14_20940 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_20950 PF00849 RNA pseudouridylate synthase E3D14_20950 PF01479 S4 domain E3D14_20955 PF13525 Outer membrane lipoprotein E3D14_20960 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_20960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain E3D14_20965 PF00375 Sodium:dicarboxylate symporter family E3D14_20970 PF03313 Serine dehydratase alpha chain E3D14_20975 PF13309 HTH domain E3D14_20975 PF08348 YheO-like PAS domain E3D14_20985 PF02233 NAD(P) transhydrogenase beta subunit E3D14_20990 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch E3D14_20990 PF05222 Alanine dehydrogenase/PNT, N-terminal domain E3D14_20990 PF01262 Alanine dehydrogenase/PNT, C-terminal domain E3D14_20995 PF00465 Iron-containing alcohol dehydrogenase E3D14_21005 PF08212 Lipocalin-like domain E3D14_21010 PF02743 Cache domain E3D14_21010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_21010 PF00672 HAMP domain E3D14_21015 PF02666 Phosphatidylserine decarboxylase E3D14_21030 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3D14_21030 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3D14_21035 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain E3D14_21035 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain E3D14_21040 PF02863 Arginine repressor, C-terminal domain E3D14_21040 PF01316 Arginine repressor, DNA binding domain E3D14_21045 PF03606 C4-dicarboxylate anaerobic carrier E3D14_21050 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain E3D14_21050 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain E3D14_21055 PF00696 Amino acid kinase family E3D14_21080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain E3D14_21080 PF00672 HAMP domain E3D14_21080 PF02743 Cache domain E3D14_21090 PF00005 ABC transporter E3D14_21095 PF13407 Periplasmic binding protein domain E3D14_21105 PF00356 Bacterial regulatory proteins, lacI family E3D14_21110 PF16363 GDP-mannose 4,6 dehydratase E3D14_21115 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain E3D14_21115 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain E3D14_21120 PF10509 Galactokinase galactose-binding signature E3D14_21120 PF00288 GHMP kinases N terminal domain E3D14_21120 PF08544 GHMP kinases C terminal E3D14_21125 PF01263 Aldose 1-epimerase E3D14_21130 PF00248 Aldo/keto reductase family E3D14_21135 PF02673 Bacitracin resistance protein BacA E3D14_21145 PF04542 Sigma-70 region 2 E3D14_21145 PF04545 Sigma-70, region 4 E3D14_21155 PF03485 Arginyl tRNA synthetase N terminal domain E3D14_21155 PF00750 tRNA synthetases class I (R) E3D14_21155 PF05746 DALR anticodon binding domain E3D14_21165 PF00227 Proteasome subunit E3D14_21170 PF00004 ATPase family associated with various cellular activities (AAA) E3D14_21170 PF07724 AAA domain (Cdc48 subfamily) E3D14_21170 PF10431 C-terminal, D2-small domain, of ClpB protein E3D14_21175 PF07690 Major Facilitator Superfamily E3D14_21180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_21180 PF03466 LysR substrate binding domain E3D14_21185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain E3D14_21185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain E3D14_21185 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_21185 PF18267 Rubredoxin NAD+ reductase C-terminal domain E3D14_21185 PF04324 BFD-like [2Fe-2S] binding domain E3D14_21190 PF13806 Rieske-like [2Fe-2S] domain E3D14_21195 PF01226 Formate/nitrite transporter E3D14_21200 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases E3D14_21200 PF14824 Sirohaem biosynthesis protein central E3D14_21200 PF10414 Sirohaem synthase dimerisation region E3D14_21205 PF00571 CBS domain E3D14_21205 PF01769 Divalent cation transporter E3D14_21205 PF03448 MgtE intracellular N domain E3D14_21220 PF03737 Aldolase/RraA E3D14_21225 PF02592 Putative vitamin uptake transporter E3D14_21235 PF02696 Uncharacterized ACR, YdiU/UPF0061 family E3D14_21240 PF00034 Cytochrome c E3D14_21245 PF00271 Helicase conserved C-terminal domain E3D14_21245 PF16124 RecQ zinc-binding E3D14_21245 PF00570 HRDC domain E3D14_21245 PF00270 DEAD/DEAH box helicase E3D14_21245 PF09382 RQC domain E3D14_21250 PF03061 Thioesterase superfamily E3D14_21265 PF03475 3-alpha domain E3D14_21265 PF03473 MOSC domain E3D14_21270 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_21275 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_21280 PF00005 ABC transporter E3D14_21280 PF08402 TOBE domain E3D14_21285 PF13416 Bacterial extracellular solute-binding protein E3D14_21290 PF13416 Bacterial extracellular solute-binding protein E3D14_21295 PF00202 Aminotransferase class-III E3D14_21300 PF00120 Glutamine synthetase, catalytic domain E3D14_21305 PF01258 Prokaryotic dksA/traR C4-type zinc finger E3D14_21315 PF05981 CreA protein E3D14_21320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain E3D14_21320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain E3D14_21325 PF00012 Hsp70 protein E3D14_21340 PF00128 Alpha amylase, catalytic domain E3D14_21340 PF02903 Alpha amylase, N-terminal ig-like domain E3D14_21345 PF02719 Polysaccharide biosynthesis protein E3D14_21365 PF01501 Glycosyl transferase family 8 E3D14_21365 PF08437 Glycosyl transferase family 8 C-terminal E3D14_21385 PF13193 AMP-binding enzyme C-terminal domain E3D14_21385 PF00501 AMP-binding enzyme E3D14_21405 PF02348 Cytidylyltransferase E3D14_21415 PF08666 SAF domain E3D14_21415 PF03102 NeuB family E3D14_21480 PF05958 tRNA (Uracil-5-)-methyltransferase E3D14_21485 PF00072 Response regulator receiver domain E3D14_21485 PF00486 Transcriptional regulatory protein, C terminal E3D14_21490 PF00512 His Kinase A (phospho-acceptor) domain E3D14_21490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_21490 PF00672 HAMP domain E3D14_21500 PF03949 Malic enzyme, NAD binding domain E3D14_21500 PF00390 Malic enzyme, N-terminal domain E3D14_21505 PF11066 Protein of unknown function (DUF2867) E3D14_21505 PF13460 NAD(P)H-binding E3D14_21510 PF01197 Ribosomal protein L31 E3D14_21515 PF00271 Helicase conserved C-terminal domain E3D14_21515 PF17764 3′ DNA-binding domain (3′BD) E3D14_21515 PF18319 PriA DNA helicase Cys-rich region (CRR) domain E3D14_21515 PF18074 Primosomal protein N C-terminal domain E3D14_21515 PF00270 DEAD/DEAH box helicase E3D14_21525 PF00440 Bacterial regulatory proteins, tetR family E3D14_21535 PF00691 OmpA family E3D14_21535 PF01389 OmpA-like transmembrane domain E3D14_21540 PF00291 Pyridoxal-phosphate dependent enzyme E3D14_21540 PF00585 C-terminal regulatory domain of Threonine dehydratase E3D14_21545 PF00920 Dehydratase family E3D14_21550 PF01063 Amino-transferase class IV E3D14_21560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain E3D14_21560 PF00205 Thiamine pyrophosphate enzyme, central domain E3D14_21560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain E3D14_21575 PF01553 Acyltransferase E3D14_21580 PF04463 Protein of unknown function (DUF523) E3D14_21590 PF00857 Isochorismatase family E3D14_21595 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain E3D14_21595 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family E3D14_21605 PF00005 ABC transporter E3D14_21610 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_21615 PF01323 DSBA-like thioredoxin domain E3D14_21620 PF01636 Phosphotransferase enzyme family E3D14_21625 PF13746 4Fe-4S dicluster domain E3D14_21625 PF12801 4Fe-4S binding domain E3D14_21625 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase E3D14_21630 PF06288 Protein of unknown function (DUF1040) E3D14_21635 PF00990 Diguanylate cyclase, GGDEF domain E3D14_21635 PF01590 GAF domain E3D14_21635 PF00563 EAL domain E3D14_21635 PF00360 Phytochrome region E3D14_21640 PF13411 MerR HTH family regulatory protein E3D14_21645 PF00403 Heavy-metal-associated domain E3D14_21650 PF00156 Phosphoribosyl transferase domain E3D14_21655 PF01138 3' exoribonuclease family, domain 1 E3D14_21655 PF03725 3' exoribonuclease family, domain 2 E3D14_21660 PF03755 YicC-like family, N-terminal region E3D14_21660 PF08340 Domain of unknown function (DUF1732) E3D14_21675 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) E3D14_21690 PF13439 Glycosyltransferase Family 4 E3D14_21690 PF00534 Glycosyl transferases group 1 E3D14_21695 PF01370 NAD dependent epimerase/dehydratase family E3D14_21700 PF08360 QacR-like protein, C-terminal region E3D14_21700 PF00440 Bacterial regulatory proteins, tetR family E3D14_21705 PF00155 Aminotransferase class I and II E3D14_21710 PF00107 Zinc-binding dehydrogenase E3D14_21710 PF08240 Alcohol dehydrogenase GroES-like domain E3D14_21725 PF13361 UvrD-like helicase C-terminal domain E3D14_21725 PF00580 UvrD/REP helicase N-terminal domain E3D14_21730 PF00266 Aminotransferase class-V E3D14_21735 PF02657 Fe-S metabolism associated domain E3D14_21740 PF00899 ThiF family E3D14_21770 PF12724 Flavodoxin domain E3D14_21775 PF02386 Cation transport protein E3D14_21780 PF09186 Domain of unknown function (DUF1949) E3D14_21780 PF01205 Uncharacterized protein family UPF0029 E3D14_21785 PF00557 Metallopeptidase family M24 E3D14_21790 PF13193 AMP-binding enzyme C-terminal domain E3D14_21790 PF00501 AMP-binding enzyme E3D14_21795 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain E3D14_21795 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain E3D14_21795 PF00378 Enoyl-CoA hydratase/isomerase E3D14_21800 PF02803 Thiolase, C-terminal domain E3D14_21800 PF00108 Thiolase, N-terminal domain E3D14_21805 PF00072 Response regulator receiver domain E3D14_21805 PF00486 Transcriptional regulatory protein, C terminal E3D14_21810 PF00512 His Kinase A (phospho-acceptor) domain E3D14_21810 PF00672 HAMP domain E3D14_21810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_21815 PF01547 Bacterial extracellular solute-binding protein E3D14_21825 PF01206 Sulfurtransferase TusA E3D14_21830 PF01042 Endoribonuclease L-PSP E3D14_21835 PF13488 Glycine zipper E3D14_21835 PF00691 OmpA family E3D14_21840 PF03352 Methyladenine glycosylase E3D14_21845 PF02091 Glycyl-tRNA synthetase alpha subunit E3D14_21850 PF05746 DALR anticodon binding domain E3D14_21850 PF02092 Glycyl-tRNA synthetase beta subunit E3D14_21855 PF11008 Protein of unknown function (DUF2846) E3D14_21860 PF01202 Shikimate kinase E3D14_21870 PF13426 PAS domain E3D14_21870 PF00990 Diguanylate cyclase, GGDEF domain E3D14_21870 PF00563 EAL domain E3D14_21875 PF03545 Yersinia virulence determinant (YopE) E3D14_21875 PF03496 ADP-ribosyltransferase exoenzyme E3D14_21880 PF05932 Tir chaperone protein (CesT) family E3D14_21885 PF03222 Tryptophan/tyrosine permease family E3D14_21890 PF12801 4Fe-4S binding domain E3D14_21900 PF07992 Pyridine nucleotide-disulphide oxidoreductase E3D14_21900 PF18113 Rubredoxin binding C-terminal domain E3D14_21905 PF00753 Metallo-beta-lactamase superfamily E3D14_21905 PF00258 Flavodoxin E3D14_21905 PF00301 Rubredoxin E3D14_21910 PF01590 GAF domain E3D14_21910 PF00158 Sigma-54 interaction domain E3D14_21915 PF00392 Bacterial regulatory proteins, gntR family E3D14_21915 PF07702 UTRA domain E3D14_21920 PF00367 phosphotransferase system, EIIB E3D14_21920 PF02378 Phosphotransferase system, EIIC E3D14_21925 PF02056 Family 4 glycosyl hydrolase E3D14_21925 PF11975 Family 4 glycosyl hydrolase C-terminal domain E3D14_21930 PF00356 Bacterial regulatory proteins, lacI family E3D14_21935 PF13458 Periplasmic binding protein E3D14_21940 PF02653 Branched-chain amino acid transport system / permease component E3D14_21945 PF11862 Domain of unknown function (DUF3382) E3D14_21945 PF02653 Branched-chain amino acid transport system / permease component E3D14_21950 PF00005 ABC transporter E3D14_21950 PF12399 Branched-chain amino acid ATP-binding cassette transporter E3D14_21955 PF00005 ABC transporter E3D14_21965 PF01810 LysE type translocator E3D14_21970 PF00581 Rhodanese-like domain E3D14_21975 PF01694 Rhomboid family E3D14_21975 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease E3D14_21980 PF12262 Bacterial virulence factor lipase N-terminal E3D14_21985 PF04380 Membrane fusogenic activity E3D14_21990 PF00175 Oxidoreductase NAD-binding domain E3D14_21995 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase E3D14_22005 PF07497 Rho termination factor, RNA-binding domain E3D14_22005 PF07498 Rho termination factor, N-terminal domain E3D14_22005 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_22010 PF00085 Thioredoxin E3D14_22015 PF00271 Helicase conserved C-terminal domain E3D14_22015 PF00270 DEAD/DEAH box helicase E3D14_22020 PF02541 Ppx/GppA phosphatase family E3D14_22030 PF04445 Putative SAM-dependent methyltransferase E3D14_22035 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_22040 PF03707 Bacterial signalling protein N terminal repeat E3D14_22040 PF00563 EAL domain E3D14_22040 PF00990 Diguanylate cyclase, GGDEF domain E3D14_22045 PF01432 Peptidase family M3 E3D14_22050 PF00490 Delta-aminolevulinic acid dehydratase E3D14_22055 PF01026 TatD related DNase E3D14_22060 PF00902 Sec-independent protein translocase protein (TatC) E3D14_22065 PF02416 mttA/Hcf106 family E3D14_22070 PF02416 mttA/Hcf106 family E3D14_22075 PF03109 ABC1 family E3D14_22080 PF02036 SCP-2 sterol transfer family E3D14_22085 PF01209 ubiE/COQ5 methyltransferase family E3D14_22090 PF02537 CrcB-like protein, Camphor Resistance (CrcB) E3D14_22135 PF03544 Gram-negative bacterial TonB protein C-terminal E3D14_22140 PF02472 Biopolymer transport protein ExbD/TolR E3D14_22145 PF01618 MotA/TolQ/ExbB proton channel family E3D14_22150 PF01618 MotA/TolQ/ExbB proton channel family E3D14_22160 PF00196 Bacterial regulatory proteins, luxR family E3D14_22160 PF03472 Autoinducer binding domain E3D14_22185 PF01420 Type I restriction modification DNA specificity domain E3D14_22190 PF01695 IstB-like ATP binding protein E3D14_22195 PF00665 Integrase core domain E3D14_22200 PF01420 Type I restriction modification DNA specificity domain E3D14_22220 PF06527 TniQ E3D14_22220 PF15978 Tn7-like transposition protein D E3D14_22230 PF15978 Tn7-like transposition protein D E3D14_22230 PF06527 TniQ E3D14_22240 PF00665 Integrase core domain E3D14_22245 PF08722 TnsA endonuclease N terminal E3D14_22245 PF08721 TnsA endonuclease C terminal E3D14_22250 PF01380 SIS domain E3D14_22255 PF08220 DeoR-like helix-turn-helix domain E3D14_22255 PF00455 DeoR C terminal sensor domain E3D14_22260 PF00072 Response regulator receiver domain E3D14_22260 PF00486 Transcriptional regulatory protein, C terminal E3D14_22265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase E3D14_22265 PF00672 HAMP domain E3D14_22265 PF00512 His Kinase A (phospho-acceptor) domain E3D14_22275 PF06123 Inner membrane protein CreD E3D14_22280 PF12804 MobA-like NTP transferase domain E3D14_22280 PF14602 Hexapeptide repeat of succinyl-transferase E3D14_22280 PF00132 Bacterial transferase hexapeptide (six repeats) E3D14_22285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain E3D14_22285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain E3D14_22290 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D14_22290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_22295 PF00231 ATP synthase E3D14_22300 PF00306 ATP synthase alpha/beta chain, C terminal domain E3D14_22300 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D14_22300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_22305 PF00213 ATP synthase delta (OSCP) subunit E3D14_22310 PF00430 ATP synthase B/B' CF(0) E3D14_22315 PF00137 ATP synthase subunit C E3D14_22320 PF00119 ATP synthase A chain E3D14_22325 PF03899 ATP synthase I chain E3D14_22330 PF17762 HTH domain found in ParB protein E3D14_22330 PF02195 ParB-like nuclease domain E3D14_22335 PF13614 AAA domain E3D14_22340 PF02527 rRNA small subunit methyltransferase G E3D14_22345 PF01134 Glucose inhibited division protein A E3D14_22345 PF13932 GidA associated domain E3D14_22350 PF00258 Flavodoxin E3D14_22355 PF00593 TonB dependent receptor E3D14_22355 PF07715 TonB-dependent Receptor Plug Domain E3D14_22360 PF00005 ABC transporter E3D14_22365 PF00005 ABC transporter E3D14_22370 PF01497 Periplasmic binding protein E3D14_22375 PF01032 FecCD transport family E3D14_22380 PF07715 TonB-dependent Receptor Plug Domain E3D14_22380 PF00593 TonB dependent receptor E3D14_22385 PF01497 Periplasmic binding protein E3D14_22390 PF00005 ABC transporter E3D14_22395 PF01032 FecCD transport family E3D14_22400 PF01032 FecCD transport family E3D14_22405 PF00005 ABC transporter E3D14_22410 PF04954 Siderophore-interacting protein E3D14_22410 PF00664 ABC transporter transmembrane region E3D14_22410 PF08021 Siderophore-interacting FAD-binding domain E3D14_22410 PF00005 ABC transporter E3D14_22420 PF00975 Thioesterase domain E3D14_22420 PF00550 Phosphopantetheine attachment site E3D14_22420 PF00668 Condensation domain E3D14_22420 PF13193 AMP-binding enzyme C-terminal domain E3D14_22420 PF00501 AMP-binding enzyme E3D14_22425 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) E3D14_22430 PF00668 Condensation domain E3D14_22430 PF00501 AMP-binding enzyme E3D14_22430 PF00550 Phosphopantetheine attachment site E3D14_22440 PF00282 Pyridoxal-dependent decarboxylase conserved domain E3D14_22445 PF10396 GTP-binding protein TrmE N-terminus E3D14_22445 PF01926 50S ribosome-binding GTPase E3D14_22445 PF12631 MnmE helical domain E3D14_22450 PF14849 YidC periplasmic domain E3D14_22450 PF02096 60Kd inner membrane protein E3D14_22455 PF01809 Putative membrane protein insertion efficiency factor E3D14_22460 PF00825 Ribonuclease P E3D14_22465 PF00468 Ribosomal protein L34 E3D14_22475 PF00528 Binding-protein-dependent transport system inner membrane component E3D14_22480 PF00497 Bacterial extracellular solute-binding proteins, family 3 E3D14_22490 PF00816 H-NS histone family E3D14_22500 PF13614 AAA domain E3D14_22510 PF00872 Transposase, Mutator family E3D14_22525 PF09013 YopH, N-terminal E3D14_22525 PF00102 Protein-tyrosine phosphatase E3D14_22540 PF01906 Putative heavy-metal-binding E3D14_22565 PF01695 IstB-like ATP binding protein E3D14_22570 PF00665 Integrase core domain E3D14_22600 PF00816 H-NS histone family E3D14_22615 PF13614 AAA domain E3D14_22640 PF05513 TraA E3D14_22645 PF07178 TraL protein E3D14_22650 PF05309 TraE protein E3D14_22660 PF03743 Bacterial conjugation TrbI-like protein E3D14_22665 PF09676 Type IV conjugative transfer system lipoprotein (TraV) E3D14_22670 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer E3D14_22680 PF12477 Sex factor F TraW protein N terminal E3D14_22685 PF06834 TraU protein E3D14_22690 PF09673 Type-F conjugative transfer system pilin assembly protein E3D14_22705 PF13728 F plasmid transfer operon protein E3D14_22710 PF06122 Conjugative relaxosome accessory transposon protein E3D14_22715 PF07916 TraG-like protein, N-terminal region E3D14_22725 PF05818 Enterobacterial TraT complement resistance protein E3D14_22730 PF12615 F sex factor protein N terminal E3D14_22730 PF10412 Type IV secretion-system coupling protein DNA-binding domain E3D14_22735 PF18272 single-stranded DNA binding TraI N-terminal subdomain E3D14_22735 PF18340 DNA relaxase TraI 2B/2B-like domain E3D14_22735 PF07057 DNA helicase TraI E3D14_22735 PF08751 TrwC relaxase E3D14_22740 PF00872 Transposase, Mutator family E3D14_22760 PF02371 Transposase IS116/IS110/IS902 family E3D14_22760 PF01548 Transposase E3D14_22770 PF02108 Flagellar assembly protein FliH E3D14_22775 PF06578 YOP proteins translocation protein K (YscK) E3D14_22780 PF01514 Secretory protein of YscJ/FliF family E3D14_22785 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI E3D14_22790 PF09025 YopR, type III needle-polymerisation regulator E3D14_22795 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) E3D14_22800 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF E3D14_22810 PF16693 Inner membrane component of T3SS, periplasmic domain E3D14_22810 PF16697 Inner membrane component of T3SS, cytoplasmic domain E3D14_22820 PF05932 Tir chaperone protein (CesT) family E3D14_22830 PF12833 Helix-turn-helix domain E3D14_22845 PF05932 Tir chaperone protein (CesT) family E3D14_22850 PF05844 YopD protein E3D14_22855 PF04888 Secretion system effector C (SseC) like family E3D14_22860 PF07720 Tetratricopeptide repeat E3D14_22865 PF04792 V antigen (LcrV) protein E3D14_22870 PF07216 LcrG protein E3D14_22875 PF09621 Type III secretion system regulator (LcrR) E3D14_22880 PF00771 FHIPEP family E3D14_22890 PF09474 Type III secretion system YscX (type_III_YscX) E3D14_22900 PF09059 TyeA E3D14_22905 PF07201 HrpJ-like domain E3D14_22910 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain E3D14_22910 PF02874 ATP synthase alpha/beta family, beta-barrel domain E3D14_22910 PF18269 T3SS EscN ATPase C-terminal domain E3D14_22925 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term E3D14_22930 PF00813 FliP family E3D14_22935 PF01313 Bacterial export proteins, family 3 E3D14_22940 PF01311 Bacterial export proteins, family 1 E3D14_22945 PF01312 FlhB HrpN YscU SpaS Family E3D14_22970 PF00561 alpha/beta hydrolase fold E3D14_22975 PF00872 Transposase, Mutator family E3D14_22980 PF01695 IstB-like ATP binding protein E3D14_22985 PF00665 Integrase core domain E3D14_23015 PF01848 Hok/gef family E3D14_23025 PF09632 Rac1-binding domain E3D14_23025 PF00069 Protein kinase domain E3D14_23105 PF01609 Transposase DDE domain E3D14_23105 PF05598 Transposase domain (DUF772) E3D14_23130 PF13610 DDE domain E3D14_23150 PF00809 Pterin binding enzyme E3D14_23155 PF00893 Small Multidrug Resistance protein E3D14_23160 PF01909 Nucleotidyltransferase domain E3D14_23160 PF13427 Domain of unknown function (DUF4111) E3D14_23185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family E3D14_23185 PF03466 LysR substrate binding domain E3D14_23190 PF07690 Major Facilitator Superfamily E3D14_23195 PF02909 Tetracyclin repressor-like, C-terminal domain E3D14_23195 PF00440 Bacterial regulatory proteins, tetR family E3D14_23205 PF07690 Major Facilitator Superfamily E3D14_23210 PF00809 Pterin binding enzyme E3D14_23215 PF00589 Phage integrase family E3D14_23215 PF13495 Phage integrase, N-terminal SAM-like domain E3D14_23230 PF01526 Tn3 transposase DDE domain E3D14_23230 PF13700 Domain of unknown function (DUF4158) E3D14_23240 PF00440 Bacterial regulatory proteins, tetR family E3D14_23240 PF02909 Tetracyclin repressor-like, C-terminal domain E3D14_23245 PF07690 Major Facilitator Superfamily E3D14_23250 PF00892 EamA-like transporter family E3D14_23280 PF00589 Phage integrase family E3D14_23295 PF13614 AAA domain E3D14_23320 PF13700 Domain of unknown function (DUF4158) E3D14_23320 PF01526 Tn3 transposase DDE domain E3D14_23335 PF00239 Resolvase, N terminal domain E3D14_23335 PF02796 Helix-turn-helix domain of resolvase E3D14_23340 PF07057 DNA helicase TraI E3D14_23340 PF18340 DNA relaxase TraI 2B/2B-like domain E3D14_23340 PF08751 TrwC relaxase E3D14_23340 PF18272 single-stranded DNA binding TraI N-terminal subdomain E3D14_23350 PF01464 Transglycosylase SLT domain E3D14_23365 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3D14_23375 PF01555 DNA methylase E3D14_23400 PF04002 RadC-like JAB domain E3D14_23410 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin E3D14_23440 PF00665 Integrase core domain E3D14_23445 PF01695 IstB-like ATP binding protein E3D14_23455 PF01848 Hok/gef family E3D14_23475 PF00884 Sulfatase E3D14_23475 PF08019 Phosphoethanolamine transferase EptA/EptB E3D14_23480 PF08019 Phosphoethanolamine transferase EptA/EptB E3D14_23480 PF00884 Sulfatase E3D14_23490 PF00239 Resolvase, N terminal domain E3D14_23490 PF02796 Helix-turn-helix domain of resolvase E3D14_23500 PF13614 AAA domain E3D14_23530 PF00816 H-NS histone family E3D14_23560 PF05513 TraA E3D14_23565 PF07178 TraL protein E3D14_23570 PF05309 TraE protein E3D14_23580 PF03743 Bacterial conjugation TrbI-like protein E3D14_23585 PF09676 Type IV conjugative transfer system lipoprotein (TraV) E3D14_23590 PF11130 F pilus assembly Type-IV secretion system for plasmid transfer E3D14_23600 PF12477 Sex factor F TraW protein N terminal E3D14_23605 PF06834 TraU protein E3D14_23610 PF09673 Type-F conjugative transfer system pilin assembly protein E3D14_23615 PF06986 Type-1V conjugative transfer system mating pair stabilisation E3D14_23620 PF13728 F plasmid transfer operon protein E3D14_23630 PF13728 F plasmid transfer operon protein E3D14_23635 PF06122 Conjugative relaxosome accessory transposon protein E3D14_23640 PF07916 TraG-like protein, N-terminal region E3D14_23650 PF05818 Enterobacterial TraT complement resistance protein E3D14_23655 PF10412 Type IV secretion-system coupling protein DNA-binding domain E3D14_23655 PF12615 F sex factor protein N terminal E3D14_23660 PF08751 TrwC relaxase E3D14_23660 PF18340 DNA relaxase TraI 2B/2B-like domain E3D14_23660 PF07057 DNA helicase TraI E3D14_23660 PF18272 single-stranded DNA binding TraI N-terminal subdomain E3D14_23665 PF05261 TraM protein, DNA-binding E3D14_23670 PF01464 Transglycosylase SLT domain E3D14_23685 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A E3D14_23705 PF01555 DNA methylase E3D14_23725 PF04002 RadC-like JAB domain E3D14_23740 PF01848 Hok/gef family E3D14_23765 PF00239 Resolvase, N terminal domain E3D14_23765 PF02796 Helix-turn-helix domain of resolvase E3D14_23770 PF00149 Calcineurin-like phosphoesterase E3D14_23820 PF02796 Helix-turn-helix domain of resolvase E3D14_23820 PF00239 Resolvase, N terminal domain E3D14_23825 PF10609 NUBPL iron-transfer P-loop NTPase E3D14_23840 PF13936 Helix-turn-helix domain E3D14_23840 PF00665 Integrase core domain E3D14_23900 PF07715 TonB-dependent Receptor Plug Domain E3D14_23900 PF00593 TonB dependent receptor E3D14_23915 PF01527 Transposase E3D14_23920 PF01548 Transposase E3D14_23920 PF02371 Transposase IS116/IS110/IS902 family E3D14_23940 PF02909 Tetracyclin repressor-like, C-terminal domain E3D14_23940 PF00440 Bacterial regulatory proteins, tetR family E3D14_23945 PF07690 Major Facilitator Superfamily E3D14_23960 PF00589 Phage integrase family E3D14_23975 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain E3D14_23990 PF16793 RepB DNA-primase from phage plasmid