locus-tag class description C3F36_00135 PF01695 IstB-like ATP binding protein C3F36_00140 PF00665 Integrase core domain C3F36_00160 PF00453 Ribosomal protein L20 C3F36_00165 PF01632 Ribosomal protein L35 C3F36_00170 PF00707 Translation initiation factor IF-3, C-terminal domain C3F36_00170 PF05198 Translation initiation factor IF-3, N-terminal domain C3F36_00175 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F36_00175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F36_00175 PF02824 TGS domain C3F36_00175 PF03129 Anticodon binding domain C3F36_00190 PF04055 Radical SAM superfamily C3F36_00195 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F36_00195 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F36_00205 PF13419 Haloacid dehalogenase-like hydrolase C3F36_00210 PF00317 Ribonucleotide reductase, all-alpha domain C3F36_00210 PF02867 Ribonucleotide reductase, barrel domain C3F36_00210 PF03477 ATP cone domain C3F36_00215 PF00268 Ribonucleotide reductase, small chain C3F36_00220 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_00225 PF06725 3D domain C3F36_00225 PF03562 MltA specific insert domain C3F36_00230 PF06945 Protein of unknown function (DUF1289) C3F36_00235 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3F36_00235 PF02378 Phosphotransferase system, EIIC C3F36_00240 PF00294 pfkB family carbohydrate kinase C3F36_00245 PF00381 PTS HPr component phosphorylation site C3F36_00245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F36_00250 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C3F36_00250 PF00356 Bacterial regulatory proteins, lacI family C3F36_00255 PF03222 Tryptophan/tyrosine permease family C3F36_00270 PF13006 Insertion element 4 transposase N-terminal C3F36_00270 PF01609 Transposase DDE domain C3F36_00275 PF00270 DEAD/DEAH box helicase C3F36_00275 PF00271 Helicase conserved C-terminal domain C3F36_00285 PF01264 Chorismate synthase C3F36_00290 PF05175 Methyltransferase small domain C3F36_00295 PF01713 Smr domain C3F36_00320 PF00704 Glycosyl hydrolases family 18 C3F36_00320 PF08329 Chitinase A, N-terminal domain C3F36_00330 PF03831 PhnA domain C3F36_00330 PF08274 PhnA Zinc-Ribbon C3F36_00350 PF01773 Na+ dependent nucleoside transporter N-terminus C3F36_00350 PF07662 Na+ dependent nucleoside transporter C-terminus C3F36_00350 PF07670 Nucleoside recognition C3F36_00355 PF01048 Phosphorylase superfamily C3F36_00360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_00360 PF03466 LysR substrate binding domain C3F36_00385 PF02567 Phenazine biosynthesis-like protein C3F36_00395 PF01042 Endoribonuclease L-PSP C3F36_00400 PF03330 Lytic transglycolase C3F36_00405 PF04310 MukB N-terminal C3F36_00405 PF16330 MukB hinge domain C3F36_00410 PF04288 MukE-like family C3F36_00415 PF17193 MukF C-terminal domain C3F36_00415 PF03882 MukF winged-helix domain C3F36_00415 PF17192 MukF middle domain C3F36_00425 PF02698 DUF218 domain C3F36_00430 PF00121 Triosephosphate isomerase C3F36_00435 PF00365 Phosphofructokinase C3F36_00440 PF07687 Peptidase dimerisation domain C3F36_00440 PF01546 Peptidase family M20/M25/M40 C3F36_00445 PF13419 Haloacid dehalogenase-like hydrolase C3F36_00450 PF00883 Cytosol aminopeptidase family, catalytic domain C3F36_00450 PF02789 Cytosol aminopeptidase family, N-terminal domain C3F36_00490 PF11398 Protein of unknown function (DUF2813) C3F36_00505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_00505 PF03466 LysR substrate binding domain C3F36_00510 PF01925 Sulfite exporter TauE/SafE C3F36_00525 PF07478 D-ala D-ala ligase C-terminus C3F36_00525 PF01820 D-ala D-ala ligase N-terminus C3F36_00535 PF00255 Glutathione peroxidase C3F36_00540 PF00270 DEAD/DEAH box helicase C3F36_00540 PF00271 Helicase conserved C-terminal domain C3F36_00555 PF02694 Uncharacterised BCR, YnfA/UPF0060 family C3F36_00575 PF13673 Acetyltransferase (GNAT) domain C3F36_00580 PF03992 Antibiotic biosynthesis monooxygenase C3F36_00585 PF08543 Phosphomethylpyrimidine kinase C3F36_00605 PF00561 alpha/beta hydrolase fold C3F36_00605 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus C3F36_00610 PF01575 MaoC like domain C3F36_00630 PF00664 ABC transporter transmembrane region C3F36_00630 PF00005 ABC transporter C3F36_00635 PF00005 ABC transporter C3F36_00635 PF00664 ABC transporter transmembrane region C3F36_00640 PF00072 Response regulator receiver domain C3F36_00640 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C3F36_00640 PF00512 His Kinase A (phospho-acceptor) domain C3F36_00640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_00640 PF00672 HAMP domain C3F36_00640 PF01627 Hpt domain C3F36_00645 PF00085 Thioredoxin C3F36_00650 PF00939 Sodium:sulfate symporter transmembrane region C3F36_00660 PF00343 Carbohydrate phosphorylase C3F36_00680 PF04715 Anthranilate synthase component I, N terminal region C3F36_00680 PF00425 chorismate binding enzyme C3F36_00685 PF00293 NUDIX domain C3F36_00690 PF03222 Tryptophan/tyrosine permease family C3F36_00695 PF00375 Sodium:dicarboxylate symporter family C3F36_00700 PF00271 Helicase conserved C-terminal domain C3F36_00700 PF00270 DEAD/DEAH box helicase C3F36_00700 PF00570 HRDC domain C3F36_00700 PF16124 RecQ zinc-binding C3F36_00700 PF09382 RQC domain C3F36_00705 PF06798 PrkA serine protein kinase C-terminal domain C3F36_00705 PF08298 PrkA AAA domain C3F36_00710 PF04285 Protein of unknown function (DUF444) C3F36_00715 PF04293 SpoVR like protein C3F36_00720 PF00392 Bacterial regulatory proteins, gntR family C3F36_00720 PF07840 FadR C-terminal domain C3F36_00725 PF06450 Bacterial Na+/H+ antiporter B (NhaB) C3F36_00730 PF02600 Disulfide bond formation protein DsbB C3F36_00735 PF09335 SNARE associated Golgi protein C3F36_00745 PF12344 Ultra-violet resistance protein B C3F36_00745 PF02151 UvrB/uvrC motif C3F36_00745 PF00271 Helicase conserved C-terminal domain C3F36_00745 PF04851 Type III restriction enzyme, res subunit C3F36_00745 PF17757 UvrB interaction domain C3F36_00760 PF02080 TrkA-C domain C3F36_00760 PF06826 Predicted Permease Membrane Region C3F36_00770 PF01385 Probable transposase C3F36_00770 PF12323 Helix-turn-helix domain C3F36_00770 PF07282 Putative transposase DNA-binding domain C3F36_00780 PF03401 Tripartite tricarboxylate transporter family receptor C3F36_00790 PF01970 Tripartite tricarboxylate transporter TctA family C3F36_00795 PF00072 Response regulator receiver domain C3F36_00800 PF00989 PAS fold C3F36_00800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C3F36_00800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_00800 PF17203 Single cache domain 3 C3F36_00805 PF01047 MarR family C3F36_00805 PF00480 ROK family C3F36_00810 PF17200 Single Cache domain 2 C3F36_00810 PF00672 HAMP domain C3F36_00810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_00815 PF02810 SEC-C motif C3F36_00820 PF04324 BFD-like [2Fe-2S] binding domain C3F36_00820 PF01266 FAD dependent oxidoreductase C3F36_00825 PF00890 FAD binding domain C3F36_00830 PF02754 Cysteine-rich domain C3F36_00830 PF13183 4Fe-4S dicluster domain C3F36_00845 PF03916 Polysulphide reductase, NrfD C3F36_00850 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C3F36_00850 PF01578 Cytochrome C assembly protein C3F36_00855 PF08534 Redoxin C3F36_00860 PF03918 Cytochrome C biogenesis protein C3F36_00865 PF00768 D-alanyl-D-alanine carboxypeptidase C3F36_00875 PF04244 Deoxyribodipyrimidine photo-lyase-related protein C3F36_00880 PF01266 FAD dependent oxidoreductase C3F36_00885 PF00571 CBS domain C3F36_00885 PF00478 IMP dehydrogenase / GMP reductase domain C3F36_00895 PF08267 Cobalamin-independent synthase, N-terminal domain C3F36_00895 PF01717 Cobalamin-independent synthase, Catalytic domain C3F36_00900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_00900 PF03466 LysR substrate binding domain C3F36_00910 PF07715 TonB-dependent Receptor Plug Domain C3F36_00910 PF00593 TonB dependent receptor C3F36_00920 PF00990 Diguanylate cyclase, GGDEF domain C3F36_00920 PF17158 Membrane-associated sensor, integral membrane domain C3F36_00925 PF12792 CSS motif domain associated with EAL C3F36_00925 PF00563 EAL domain C3F36_00930 PF02311 AraC-like ligand binding domain C3F36_00930 PF12833 Helix-turn-helix domain C3F36_00935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_00935 PF03466 LysR substrate binding domain C3F36_00940 PF13460 NAD(P)H-binding C3F36_00950 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F36_00955 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain C3F36_00955 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain C3F36_00975 PF00141 Peroxidase C3F36_00980 PF00455 DeoR C terminal sensor domain C3F36_00980 PF08220 DeoR-like helix-turn-helix domain C3F36_01005 PF10722 Putative bacterial sensory transduction regulator C3F36_01015 PF00265 Thymidine kinase C3F36_01020 PF03553 Na+/H+ antiporter family C3F36_01025 PF00816 H-NS histone family C3F36_01030 PF01923 Cobalamin adenosyltransferase C3F36_01035 PF12843 Putative quorum-sensing-regulated virulence factor C3F36_01040 PF04055 Radical SAM superfamily C3F36_01045 PF06508 Queuosine biosynthesis protein QueC C3F36_01060 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family C3F36_01065 PF18073 Rubredoxin metal binding domain C3F36_01075 PF00216 Bacterial DNA-binding protein C3F36_01080 PF00575 S1 RNA binding domain C3F36_01085 PF02224 Cytidylate kinase C3F36_01090 PF00925 GTP cyclohydrolase II C3F36_01095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_01095 PF03466 LysR substrate binding domain C3F36_01100 PF07690 Major Facilitator Superfamily C3F36_01115 PF00881 Nitroreductase family C3F36_01120 PF03806 AbgT putative transporter family C3F36_01125 PF00990 Diguanylate cyclase, GGDEF domain C3F36_01125 PF13188 PAS domain C3F36_01125 PF00563 EAL domain C3F36_01125 PF03707 Bacterial signalling protein N terminal repeat C3F36_01135 PF03466 LysR substrate binding domain C3F36_01135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_01140 PF00486 Transcriptional regulatory protein, C terminal C3F36_01140 PF00072 Response regulator receiver domain C3F36_01150 PF01212 Beta-eliminating lyase C3F36_01165 PF00248 Aldo/keto reductase family C3F36_01170 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) C3F36_01180 PF03411 Penicillin-insensitive murein endopeptidase C3F36_01190 PF04536 TPM domain C3F36_01210 PF01618 MotA/TolQ/ExbB proton channel family C3F36_01215 PF00691 OmpA family C3F36_01215 PF13677 Membrane MotB of proton-channel complex MotA/MotB C3F36_01220 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 C3F36_01225 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit C3F36_01230 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit C3F36_01230 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit C3F36_01240 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C3F36_01240 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C3F36_01245 PF00384 Molybdopterin oxidoreductase C3F36_01245 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region C3F36_01245 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F36_01250 PF00146 NADH dehydrogenase C3F36_01255 PF12838 4Fe-4S dicluster domain C3F36_01260 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 C3F36_01265 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L C3F36_01270 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus C3F36_01270 PF00361 Proton-conducting membrane transporter C3F36_01275 PF00361 Proton-conducting membrane transporter C3F36_01280 PF00361 Proton-conducting membrane transporter C3F36_01285 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal C3F36_01285 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain C3F36_01285 PF02769 AIR synthase related protein, C-terminal domain C3F36_01290 PF01464 Transglycosylase SLT domain C3F36_01290 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_01295 PF07191 zinc-ribbons C3F36_01300 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal C3F36_01300 PF01926 50S ribosome-binding GTPase C3F36_01305 PF13360 PQQ-like domain C3F36_01310 PF09976 Tetratricopeptide repeat-like domain C3F36_01315 PF03129 Anticodon binding domain C3F36_01315 PF13393 Histidyl-tRNA synthetase C3F36_01320 PF04551 GcpE protein C3F36_01325 PF13464 Domain of unknown function (DUF4115) C3F36_01335 PF04055 Radical SAM superfamily C3F36_01340 PF00334 Nucleoside diphosphate kinase C3F36_01345 PF12404 Peptidase C3F36_01345 PF00883 Cytosol aminopeptidase family, catalytic domain C3F36_01350 PF00883 Cytosol aminopeptidase family, catalytic domain C3F36_01350 PF12404 Peptidase C3F36_01355 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_01360 PF00012 Hsp70 protein C3F36_01365 PF00226 DnaJ domain C3F36_01365 PF07743 HSCB C-terminal oligomerisation domain C3F36_01370 PF01521 Iron-sulphur cluster biosynthesis C3F36_01375 PF01592 NifU-like N terminal domain C3F36_01380 PF00266 Aminotransferase class-V C3F36_01385 PF02082 Transcriptional regulator C3F36_01390 PF00588 SpoU rRNA Methylase family C3F36_01410 PF13181 Tetratricopeptide repeat C3F36_01410 PF07719 Tetratricopeptide repeat C3F36_01415 PF00581 Rhodanese-like domain C3F36_01420 PF02355 Protein export membrane protein C3F36_01420 PF07549 SecD/SecF GG Motif C3F36_01425 PF02355 Protein export membrane protein C3F36_01425 PF13721 SecD export protein N-terminal TM region C3F36_01425 PF07549 SecD/SecF GG Motif C3F36_01430 PF02699 Preprotein translocase subunit C3F36_01435 PF01702 Queuine tRNA-ribosyltransferase C3F36_01440 PF02547 Queuosine biosynthesis protein C3F36_01445 PF00571 CBS domain C3F36_01450 PF10417 C-terminal domain of 1-Cys peroxiredoxin C3F36_01450 PF00578 AhpC/TSA family C3F36_01455 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_01455 PF13192 Thioredoxin domain C3F36_01465 PF01695 IstB-like ATP binding protein C3F36_01470 PF00665 Integrase core domain C3F36_01485 PF02347 Glycine cleavage system P-protein C3F36_01490 PF01597 Glycine cleavage H-protein C3F36_01495 PF08669 Glycine cleavage T-protein C-terminal barrel domain C3F36_01495 PF01571 Aminomethyltransferase folate-binding domain C3F36_01500 PF01494 FAD binding domain C3F36_01505 PF01494 FAD binding domain C3F36_01510 PF03695 Uncharacterised protein family (UPF0149) C3F36_01515 PF05164 Cell division protein ZapA C3F36_01525 PF13006 Insertion element 4 transposase N-terminal C3F36_01525 PF01609 Transposase DDE domain C3F36_01530 PF07690 Major Facilitator Superfamily C3F36_01535 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_01535 PF00005 ABC transporter C3F36_01540 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_01540 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F36_01545 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_01555 PF00043 Glutathione S-transferase, C-terminal domain C3F36_01555 PF02798 Glutathione S-transferase, N-terminal domain C3F36_01560 PF00043 Glutathione S-transferase, C-terminal domain C3F36_01560 PF02798 Glutathione S-transferase, N-terminal domain C3F36_01570 PF00459 Inositol monophosphatase family C3F36_01575 PF00691 OmpA family C3F36_01575 PF18393 MotY N-terminal domain C3F36_01580 PF02743 Cache domain C3F36_01580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_01580 PF00672 HAMP domain C3F36_01585 PF00929 Exonuclease C3F36_01590 PF13726 Na+-H+ antiporter family C3F36_01590 PF03553 Na+/H+ antiporter family C3F36_01595 PF07690 Major Facilitator Superfamily C3F36_01600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_01600 PF03466 LysR substrate binding domain C3F36_01605 PF00563 EAL domain C3F36_01605 PF00990 Diguanylate cyclase, GGDEF domain C3F36_01605 PF08447 PAS fold C3F36_01605 PF08448 PAS fold C3F36_01615 PF00271 Helicase conserved C-terminal domain C3F36_01615 PF00270 DEAD/DEAH box helicase C3F36_01615 PF03880 DbpA RNA binding domain C3F36_01620 PF03061 Thioesterase superfamily C3F36_01630 PF13183 4Fe-4S dicluster domain C3F36_01630 PF01565 FAD binding domain C3F36_01630 PF02913 FAD linked oxidases, C-terminal domain C3F36_01640 PF03471 Transporter associated domain C3F36_01640 PF03741 Integral membrane protein TerC family C3F36_01645 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F36_01650 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_01650 PF00107 Zinc-binding dehydrogenase C3F36_01655 PF00962 Adenosine/AMP deaminase C3F36_01660 PF13344 Haloacid dehalogenase-like hydrolase C3F36_01670 PF00733 Asparagine synthase C3F36_01670 PF13537 Glutamine amidotransferase domain C3F36_01685 PF02798 Glutathione S-transferase, N-terminal domain C3F36_01685 PF14497 Glutathione S-transferase, C-terminal domain C3F36_01695 PF04209 homogentisate 1,2-dioxygenase C3F36_01700 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F36_01710 PF00849 RNA pseudouridylate synthase C3F36_01715 PF00563 EAL domain C3F36_01715 PF00990 Diguanylate cyclase, GGDEF domain C3F36_01715 PF13426 PAS domain C3F36_01720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_01720 PF12729 Four helix bundle sensory module for signal transduction C3F36_01720 PF00672 HAMP domain C3F36_01730 PF00285 Citrate synthase, C-terminal domain C3F36_01735 PF00694 Aconitase C-terminal domain C3F36_01735 PF00330 Aconitase family (aconitate hydratase) C3F36_01740 PF04303 PrpF protein C3F36_01750 PF07660 Secretin and TonB N terminus short domain C3F36_01750 PF07715 TonB-dependent Receptor Plug Domain C3F36_01750 PF00593 TonB dependent receptor C3F36_01760 PF01027 Inhibitor of apoptosis-promoting Bax1 C3F36_01770 PF04358 DsrC like protein C3F36_01775 PF05036 Sporulation related domain C3F36_01780 PF08245 Mur ligase middle domain C3F36_01780 PF02875 Mur ligase family, glutamate ligase domain C3F36_01785 PF17848 Acetyl-coA carboxylase zinc finger domain C3F36_01785 PF01039 Carboxyl transferase domain C3F36_01790 PF01416 tRNA pseudouridine synthase C3F36_01800 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F36_01800 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F36_01805 PF11890 Domain of unknown function (DUF3410) C3F36_01805 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F36_01805 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F36_01815 PF03180 NLPA lipoprotein C3F36_01840 PF00005 ABC transporter C3F36_01845 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain C3F36_01845 PF02896 PEP-utilising enzyme, TIM barrel domain C3F36_01845 PF00391 PEP-utilising enzyme, mobile domain C3F36_01850 PF03618 Kinase/pyrophosphorylase C3F36_01860 PF00324 Amino acid permease C3F36_01900 PF00664 ABC transporter transmembrane region C3F36_01900 PF00005 ABC transporter C3F36_01900 PF03412 Peptidase C39 family C3F36_01905 PF16199 Radical_SAM C-terminal domain C3F36_01905 PF04055 Radical SAM superfamily C3F36_01910 PF01493 GXGXG motif C3F36_01910 PF01645 Conserved region in glutamate synthase C3F36_01910 PF04898 Glutamate synthase central domain C3F36_01910 PF00310 Glutamine amidotransferases class-II C3F36_01915 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_01915 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3F36_01935 PF14521 Lysine-specific metallo-endopeptidase C3F36_01945 PF00270 DEAD/DEAH box helicase C3F36_01945 PF00271 Helicase conserved C-terminal domain C3F36_01965 PF05598 Transposase domain (DUF772) C3F36_01965 PF01609 Transposase DDE domain C3F36_01970 PF07759 Protein of unknown function (DUF1615) C3F36_01975 PF00990 Diguanylate cyclase, GGDEF domain C3F36_01980 PF00682 HMGL-like C3F36_01980 PF08502 LeuA allosteric (dimerisation) domain C3F36_01985 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F36_01985 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain C3F36_01985 PF02142 MGS-like domain C3F36_01990 PF00117 Glutamine amidotransferase class-I C3F36_01990 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain C3F36_01995 PF01113 Dihydrodipicolinate reductase, N-terminus C3F36_01995 PF05173 Dihydrodipicolinate reductase, C-terminus C3F36_02005 PF01812 5-formyltetrahydrofolate cyclo-ligase family C3F36_02010 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) C3F36_02015 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F36_02015 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F36_02015 PF01842 ACT domain C3F36_02020 PF01219 Prokaryotic diacylglycerol kinase C3F36_02025 PF00793 DAHP synthetase I family C3F36_02035 PF00005 ABC transporter C3F36_02040 PF01032 FecCD transport family C3F36_02055 PF00437 Type II/IV secretion system protein C3F36_02065 PF07670 Nucleoside recognition C3F36_02065 PF02421 Ferrous iron transport protein B C3F36_02065 PF17910 FeoB cytosolic helical domain C3F36_02065 PF07664 Ferrous iron transport protein B C terminus C3F36_02075 PF01253 Translation initiation factor SUI1 C3F36_02080 PF01169 Uncharacterized protein family UPF0016 C3F36_02115 PF00990 Diguanylate cyclase, GGDEF domain C3F36_02115 PF13185 GAF domain C3F36_02125 PF01406 tRNA synthetases class I (C) catalytic domain C3F36_02125 PF09190 DALR domain C3F36_02130 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F36_02140 PF00149 Calcineurin-like phosphoesterase C3F36_02145 PF04226 Transglycosylase associated protein C3F36_02150 PF00440 Bacterial regulatory proteins, tetR family C3F36_02150 PF16925 Tetracyclin repressor-like, C-terminal domain C3F36_02155 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_02155 PF00107 Zinc-binding dehydrogenase C3F36_02170 PF13737 Transposase DDE domain C3F36_02180 PF03466 LysR substrate binding domain C3F36_02180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_02185 PF02661 Fic/DOC family C3F36_02185 PF13784 Fic/DOC family N-terminal C3F36_02190 PF01609 Transposase DDE domain C3F36_02190 PF05598 Transposase domain (DUF772) C3F36_02215 PF01066 CDP-alcohol phosphatidyltransferase C3F36_02220 PF08459 UvrC Helix-hairpin-helix N-terminal C3F36_02220 PF01541 GIY-YIG catalytic domain C3F36_02220 PF02151 UvrB/uvrC motif C3F36_02225 PF00072 Response regulator receiver domain C3F36_02225 PF00196 Bacterial regulatory proteins, luxR family C3F36_02230 PF02348 Cytidylyltransferase C3F36_02235 PF03966 Trm112p-like protein C3F36_02240 PF02606 Tetraacyldisaccharide-1-P 4'-kinase C3F36_02245 PF00005 ABC transporter C3F36_02245 PF00664 ABC transporter transmembrane region C3F36_02265 PF05872 Bacterial protein of unknown function (DUF853) C3F36_02270 PF00155 Aminotransferase class I and II C3F36_02280 PF13609 Gram-negative porin C3F36_02285 PF06733 DEAD_2 C3F36_02285 PF13307 Helicase C-terminal domain C3F36_02295 PF00850 Histone deacetylase domain C3F36_02300 PF07690 Major Facilitator Superfamily C3F36_02305 PF01926 50S ribosome-binding GTPase C3F36_02310 PF00245 Alkaline phosphatase C3F36_02315 PF00245 Alkaline phosphatase C3F36_02330 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F36_02330 PF14760 Rnk N-terminus C3F36_02340 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_02345 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_02350 PF00005 ABC transporter C3F36_02360 PF04116 Fatty acid hydroxylase superfamily C3F36_02365 PF13520 Amino acid permease C3F36_02370 PF02574 Homocysteine S-methyltransferase C3F36_02370 PF02310 B12 binding domain C3F36_02370 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3F36_02370 PF02607 B12 binding domain C3F36_02370 PF00809 Pterin binding enzyme C3F36_02380 PF01595 Cyclin M transmembrane N-terminal domain C3F36_02380 PF03471 Transporter associated domain C3F36_02380 PF00571 CBS domain C3F36_02385 PF01895 PhoU domain C3F36_02395 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_02400 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_02405 PF14437 MafB19-like deaminase C3F36_02420 PF01274 Malate synthase C3F36_02425 PF00463 Isocitrate lyase family C3F36_02430 PF00308 Bacterial dnaA protein C3F36_02445 PF00586 AIR synthase related protein, N-terminal domain C3F36_02445 PF02769 AIR synthase related protein, C-terminal domain C3F36_02450 PF00551 Formyl transferase C3F36_02455 PF01784 NIF3 (NGG1p interacting factor 3) C3F36_02460 PF00158 Sigma-54 interaction domain C3F36_02460 PF02954 Bacterial regulatory protein, Fis family C3F36_02465 PF00989 PAS fold C3F36_02465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_02465 PF00512 His Kinase A (phospho-acceptor) domain C3F36_02470 PF02954 Bacterial regulatory protein, Fis family C3F36_02470 PF00072 Response regulator receiver domain C3F36_02470 PF00158 Sigma-54 interaction domain C3F36_02480 PF01842 ACT domain C3F36_02485 PF17941 Polyphosphate kinase C-terminal domain 1 C3F36_02485 PF13089 Polyphosphate kinase N-terminal domain C3F36_02485 PF13090 Polyphosphate kinase C-terminal domain 2 C3F36_02485 PF02503 Polyphosphate kinase middle domain C3F36_02490 PF02541 Ppx/GppA phosphatase family C3F36_02495 PF01769 Divalent cation transporter C3F36_02495 PF00571 CBS domain C3F36_02495 PF03448 MgtE intracellular N domain C3F36_02510 PF10135 Rod binding protein C3F36_02510 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase C3F36_02515 PF02119 Flagellar P-ring protein C3F36_02520 PF02107 Flagellar L-ring protein C3F36_02525 PF00460 Flagella basal body rod protein C3F36_02525 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_02530 PF00460 Flagella basal body rod protein C3F36_02530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_02535 PF07559 Flagellar basal body protein FlaE C3F36_02535 PF00460 Flagella basal body rod protein C3F36_02535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_02545 PF00460 Flagella basal body rod protein C3F36_02545 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_02550 PF00460 Flagella basal body rod protein C3F36_02555 PF01739 CheR methyltransferase, SAM binding domain C3F36_02555 PF03705 CheR methyltransferase, all-alpha domain C3F36_02560 PF00072 Response regulator receiver domain C3F36_02560 PF01584 CheW-like domain C3F36_02565 PF13144 Chaperone for flagella basal body P-ring formation C3F36_02580 PF12850 Calcineurin-like phosphoesterase superfamily domain C3F36_02585 PF07282 Putative transposase DNA-binding domain C3F36_02585 PF01385 Probable transposase C3F36_02585 PF12323 Helix-turn-helix domain C3F36_02595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_02605 PF00849 RNA pseudouridylate synthase C3F36_02605 PF01479 S4 domain C3F36_02610 PF01966 HD domain C3F36_02620 PF00892 EamA-like transporter family C3F36_02625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_02635 PF02371 Transposase IS116/IS110/IS902 family C3F36_02635 PF01548 Transposase C3F36_02660 PF00313 'Cold-shock' DNA-binding domain C3F36_02665 PF00364 Biotin-requiring enzyme C3F36_02665 PF02817 e3 binding domain C3F36_02665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F36_02670 PF02779 Transketolase, pyrimidine binding domain C3F36_02670 PF02780 Transketolase, C-terminal domain C3F36_02675 PF00676 Dehydrogenase E1 component C3F36_02680 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family C3F36_02690 PF05472 DNA replication terminus site-binding protein (Ter protein) C3F36_02695 PF04434 SWIM zinc finger C3F36_02695 PF00176 SNF2 family N-terminal domain C3F36_02695 PF00271 Helicase conserved C-terminal domain C3F36_02700 PF04337 Protein of unknown function, DUF480 C3F36_02715 PF02706 Chain length determinant protein C3F36_02720 PF00953 Glycosyl transferase family 4 C3F36_02725 PF00535 Glycosyl transferase family 2 C3F36_02735 PF00535 Glycosyl transferase family 2 C3F36_02760 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_02765 PF05523 WxcM-like, C-terminal C3F36_02770 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase C3F36_02775 PF00483 Nucleotidyl transferase C3F36_02780 PF04321 RmlD substrate binding domain C3F36_02785 PF16363 GDP-mannose 4,6 dehydratase C3F36_02790 PF00486 Transcriptional regulatory protein, C terminal C3F36_02790 PF00072 Response regulator receiver domain C3F36_02795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_02795 PF08918 PhoQ Sensor C3F36_02800 PF02685 Glucokinase C3F36_02805 PF01418 Helix-turn-helix domain, rpiR family C3F36_02805 PF01380 SIS domain C3F36_02810 PF00224 Pyruvate kinase, barrel domain C3F36_02810 PF02887 Pyruvate kinase, alpha/beta domain C3F36_02825 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F36_02825 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F36_02825 PF02770 Acyl-CoA dehydrogenase, middle domain C3F36_02825 PF09317 Domain of unknown function (DUF1974) C3F36_02830 PF00440 Bacterial regulatory proteins, tetR family C3F36_02860 PF00665 Integrase core domain C3F36_02865 PF01695 IstB-like ATP binding protein C3F36_02880 PF01555 DNA methylase C3F36_02885 PF01609 Transposase DDE domain C3F36_02890 PF01555 DNA methylase C3F36_02915 PF00271 Helicase conserved C-terminal domain C3F36_02915 PF00176 SNF2 family N-terminal domain C3F36_02920 PF01695 IstB-like ATP binding protein C3F36_02925 PF00665 Integrase core domain C3F36_02935 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A C3F36_02945 PF00872 Transposase, Mutator family C3F36_02950 PF00860 Permease family C3F36_02955 PF02733 Dak1 domain C3F36_02960 PF02734 DAK2 domain C3F36_02965 PF00381 PTS HPr component phosphorylation site C3F36_02965 PF03610 PTS system fructose IIA component C3F36_02965 PF05524 PEP-utilising enzyme, N-terminal C3F36_02965 PF00391 PEP-utilising enzyme, mobile domain C3F36_02970 PF00465 Iron-containing alcohol dehydrogenase C3F36_02975 PF00158 Sigma-54 interaction domain C3F36_02975 PF02954 Bacterial regulatory protein, Fis family C3F36_02975 PF00989 PAS fold C3F36_02990 PF01609 Transposase DDE domain C3F36_02990 PF13808 DDE_Tnp_1-associated C3F36_03005 PF01695 IstB-like ATP binding protein C3F36_03010 PF00665 Integrase core domain C3F36_03035 PF02321 Outer membrane efflux protein C3F36_03040 PF00873 AcrB/AcrD/AcrF family C3F36_03045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_03045 PF00529 HlyD membrane-fusion protein of T1SS C3F36_03050 PF08361 MAATS-type transcriptional repressor, C-terminal region C3F36_03050 PF00440 Bacterial regulatory proteins, tetR family C3F36_03070 PF01479 S4 domain C3F36_03070 PF00849 RNA pseudouridylate synthase C3F36_03075 PF04079 Segregation and condensation complex subunit ScpB C3F36_03080 PF02616 Segregation and condensation protein ScpA C3F36_03085 PF01300 Telomere recombination C3F36_03090 PF02811 PHP domain C3F36_03095 PF04715 Anthranilate synthase component I, N terminal region C3F36_03095 PF00425 chorismate binding enzyme C3F36_03100 PF00117 Glutamine amidotransferase class-I C3F36_03100 PF02885 Glycosyl transferase family, helical bundle domain C3F36_03100 PF00591 Glycosyl transferase family, a/b domain C3F36_03105 PF00591 Glycosyl transferase family, a/b domain C3F36_03105 PF02885 Glycosyl transferase family, helical bundle domain C3F36_03110 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase C3F36_03110 PF00218 Indole-3-glycerol phosphate synthase C3F36_03115 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_03120 PF00290 Tryptophan synthase alpha chain C3F36_03135 PF01381 Helix-turn-helix C3F36_03140 PF07804 HipA-like C-terminal domain C3F36_03140 PF13657 HipA N-terminal domain C3F36_03150 PF01695 IstB-like ATP binding protein C3F36_03155 PF00665 Integrase core domain C3F36_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_03170 PF03466 LysR substrate binding domain C3F36_03180 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C3F36_03185 PF00005 ABC transporter C3F36_03190 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_03195 PF02668 Taurine catabolism dioxygenase TauD, TfdA family C3F36_03200 PF07237 Protein of unknown function (DUF1428) C3F36_03205 PF07690 Major Facilitator Superfamily C3F36_03215 PF01040 UbiA prenyltransferase family C3F36_03220 PF03626 Prokaryotic Cytochrome C oxidase subunit IV C3F36_03225 PF00510 Cytochrome c oxidase subunit III C3F36_03230 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3F36_03235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3F36_03235 PF06481 COX Aromatic Rich Motif C3F36_03240 PF02627 Carboxymuconolactone decarboxylase family C3F36_03245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_03245 PF03466 LysR substrate binding domain C3F36_03255 PF01156 Inosine-uridine preferring nucleoside hydrolase C3F36_03265 PF01047 MarR family C3F36_03280 PF00127 Copper binding proteins, plastocyanin/azurin family C3F36_03285 PF02424 ApbE family C3F36_03290 PF00011 Hsp20/alpha crystallin family C3F36_03295 PF00072 Response regulator receiver domain C3F36_03305 PF03372 Endonuclease/Exonuclease/phosphatase family C3F36_03315 PF00529 HlyD membrane-fusion protein of T1SS C3F36_03315 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_03320 PF00873 AcrB/AcrD/AcrF family C3F36_03335 PF10437 Bacterial lipoate protein ligase C-terminus C3F36_03335 PF03099 Biotin/lipoate A/B protein ligase family C3F36_03345 PF00873 AcrB/AcrD/AcrF family C3F36_03360 PF04143 Sulphur transport C3F36_03365 PF01022 Bacterial regulatory protein, arsR family C3F36_03375 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_03385 PF02308 MgtC family C3F36_03390 PF13407 Periplasmic binding protein domain C3F36_03390 PF00356 Bacterial regulatory proteins, lacI family C3F36_03395 PF08244 Glycosyl hydrolases family 32 C terminal C3F36_03395 PF00251 Glycosyl hydrolases family 32 N-terminal domain C3F36_03400 PF00367 phosphotransferase system, EIIB C3F36_03400 PF02378 Phosphotransferase system, EIIC C3F36_03405 PF00294 pfkB family carbohydrate kinase C3F36_03410 PF11471 Maltoporin periplasmic N-terminal extension C3F36_03410 PF02264 LamB porin C3F36_03415 PF00226 DnaJ domain C3F36_03415 PF01556 DnaJ C terminal domain C3F36_03415 PF00684 DnaJ central domain C3F36_03420 PF00012 Hsp70 protein C3F36_03425 PF01025 GrpE C3F36_03430 PF01513 ATP-NAD kinase C3F36_03435 PF00990 Diguanylate cyclase, GGDEF domain C3F36_03435 PF17158 Membrane-associated sensor, integral membrane domain C3F36_03440 PF02463 RecF/RecN/SMC N terminal domain C3F36_03450 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_03455 PF00005 ABC transporter C3F36_03455 PF02687 FtsX-like permease family C3F36_03455 PF12704 MacB-like periplasmic core domain C3F36_03460 PF02321 Outer membrane efflux protein C3F36_03465 PF04954 Siderophore-interacting protein C3F36_03465 PF08021 Siderophore-interacting FAD-binding domain C3F36_03470 PF00793 DAHP synthetase I family C3F36_03475 PF00816 H-NS histone family C3F36_03480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_03480 PF03466 LysR substrate binding domain C3F36_03485 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_03495 PF00180 Isocitrate/isopropylmalate dehydrogenase C3F36_03530 PF00583 Acetyltransferase (GNAT) family C3F36_03535 PF00849 RNA pseudouridylate synthase C3F36_03540 PF00293 NUDIX domain C3F36_03550 PF04356 Protein of unknown function (DUF489) C3F36_03555 PF08328 Adenylosuccinate lyase C-terminal C3F36_03555 PF00206 Lyase C3F36_03560 PF08007 Cupin superfamily protein C3F36_03565 PF02887 Pyruvate kinase, alpha/beta domain C3F36_03565 PF00224 Pyruvate kinase, barrel domain C3F36_03570 PF12794 Mechanosensitive ion channel inner membrane domain 1 C3F36_03570 PF12795 Mechanosensitive ion channel porin domain C3F36_03570 PF00924 Mechanosensitive ion channel C3F36_03575 PF01810 LysE type translocator C3F36_03580 PF10282 Lactonase, 7-bladed beta-propeller C3F36_03590 PF00860 Permease family C3F36_03600 PF03949 Malic enzyme, NAD binding domain C3F36_03600 PF00390 Malic enzyme, N-terminal domain C3F36_03605 PF12804 MobA-like NTP transferase domain C3F36_03610 PF03205 Molybdopterin guanine dinucleotide synthesis protein B C3F36_03615 PF04632 Fusaric acid resistance protein family C3F36_03630 PF13426 PAS domain C3F36_03630 PF08447 PAS fold C3F36_03630 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_03650 PF05114 Protein of unknown function (DUF692) C3F36_03665 PF02028 BCCT, betaine/carnitine/choline family transporter C3F36_03685 PF13474 SnoaL-like domain C3F36_03690 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_03690 PF14821 Threonine synthase N terminus C3F36_03695 PF08544 GHMP kinases C terminal C3F36_03695 PF00288 GHMP kinases N terminal domain C3F36_03700 PF00742 Homoserine dehydrogenase C3F36_03700 PF03447 Homoserine dehydrogenase, NAD binding domain C3F36_03700 PF13840 ACT domain C3F36_03700 PF00696 Amino acid kinase family C3F36_03700 PF01842 ACT domain C3F36_03710 PF00588 SpoU rRNA Methylase family C3F36_03715 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) C3F36_03730 PF03737 Aldolase/RraA C3F36_03740 PF00072 Response regulator receiver domain C3F36_03740 PF00486 Transcriptional regulatory protein, C terminal C3F36_03755 PF00005 ABC transporter C3F36_03755 PF00664 ABC transporter transmembrane region C3F36_03760 PF00664 ABC transporter transmembrane region C3F36_03760 PF00005 ABC transporter C3F36_03780 PF18389 TrmO C-terminal domain C3F36_03780 PF01980 tRNA-methyltransferase O C3F36_03785 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3F36_03785 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3F36_03795 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_03795 PF01434 Peptidase family M41 C3F36_03795 PF06480 FtsH Extracellular C3F36_03795 PF17862 AAA+ lid domain C3F36_03800 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_03805 PF00381 PTS HPr component phosphorylation site C3F36_03810 PF02896 PEP-utilising enzyme, TIM barrel domain C3F36_03810 PF05524 PEP-utilising enzyme, N-terminal C3F36_03810 PF00391 PEP-utilising enzyme, mobile domain C3F36_03815 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C3F36_03820 PF01292 Prokaryotic cytochrome b561 C3F36_03830 PF12320 Type 5 capsule protein repressor C-terminal domain C3F36_03830 PF00149 Calcineurin-like phosphoesterase C3F36_03835 PF00583 Acetyltransferase (GNAT) family C3F36_03840 PF04381 Putative exonuclease, RdgC C3F36_03880 PF13737 Transposase DDE domain C3F36_03890 PF01266 FAD dependent oxidoreductase C3F36_03895 PF01381 Helix-turn-helix C3F36_03895 PF07883 Cupin domain C3F36_03900 PF00171 Aldehyde dehydrogenase family C3F36_03905 PF00202 Aminotransferase class-III C3F36_03910 PF00324 Amino acid permease C3F36_03915 PF13520 Amino acid permease C3F36_03925 PF02690 Na+/Pi-cotransporter C3F36_03930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F36_03930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_03935 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase C3F36_03945 PF10725 Protein of unknown function (DUF2517) C3F36_03975 PF03734 L,D-transpeptidase catalytic domain C3F36_03975 PF01476 LysM domain C3F36_03975 PF17969 L,D-transpeptidase C-terminal domain C3F36_03990 PF05971 RNA methyltransferase C3F36_03995 PF00877 NlpC/P60 family C3F36_04000 PF01648 4'-phosphopantetheinyl transferase superfamily C3F36_04005 PF00085 Thioredoxin C3F36_04015 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F36_04020 PF01842 ACT domain C3F36_04020 PF00551 Formyl transferase C3F36_04030 PF13091 PLD-like domain C3F36_04030 PF13396 Phospholipase_D-nuclease N-terminal C3F36_04045 PF01551 Peptidase family M23 C3F36_04045 PF10145 Phage-related minor tail protein C3F36_04045 PF01464 Transglycosylase SLT domain C3F36_04060 PF02075 Crossover junction endodeoxyribonuclease RuvC C3F36_04065 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3F36_04125 PF04055 Radical SAM superfamily C3F36_04125 PF08497 Radical SAM N-terminal C3F36_04125 PF11842 Domain of unknown function (DUF3362) C3F36_04130 PF00873 AcrB/AcrD/AcrF family C3F36_04140 PF00990 Diguanylate cyclase, GGDEF domain C3F36_04140 PF17158 Membrane-associated sensor, integral membrane domain C3F36_04145 PF01734 Patatin-like phospholipase C3F36_04150 PF00209 Sodium:neurotransmitter symporter family C3F36_04160 PF13737 Transposase DDE domain C3F36_04185 PF00990 Diguanylate cyclase, GGDEF domain C3F36_04185 PF05230 MASE2 domain C3F36_04200 PF00691 OmpA family C3F36_04200 PF01389 OmpA-like transmembrane domain C3F36_04205 PF00691 OmpA family C3F36_04205 PF01389 OmpA-like transmembrane domain C3F36_04210 PF01389 OmpA-like transmembrane domain C3F36_04210 PF00691 OmpA family C3F36_04215 PF00390 Malic enzyme, N-terminal domain C3F36_04215 PF03949 Malic enzyme, NAD binding domain C3F36_04220 PF12833 Helix-turn-helix domain C3F36_04225 PF01554 MatE C3F36_04230 PF10692 Protein of unknown function (DUF2498) C3F36_04235 PF00072 Response regulator receiver domain C3F36_04235 PF00990 Diguanylate cyclase, GGDEF domain C3F36_04240 PF00860 Permease family C3F36_04250 PF01235 Sodium:alanine symporter family C3F36_04255 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F36_04255 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3F36_04260 PF01699 Sodium/calcium exchanger protein C3F36_04265 PF08534 Redoxin C3F36_04270 PF00293 NUDIX domain C3F36_04280 PF00005 ABC transporter C3F36_04285 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_04290 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_04295 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_04310 PF00005 ABC transporter C3F36_04315 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F36_04315 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_04330 PF03932 CutC family C3F36_04335 PF00480 ROK family C3F36_04345 PF01435 Peptidase family M48 C3F36_04350 PF12849 PBP superfamily domain C3F36_04355 PF00512 His Kinase A (phospho-acceptor) domain C3F36_04355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_04355 PF00989 PAS fold C3F36_04355 PF11808 Phosphate regulon sensor protein PhoR C3F36_04360 PF00486 Transcriptional regulatory protein, C terminal C3F36_04360 PF00072 Response regulator receiver domain C3F36_04375 PF01590 GAF domain C3F36_04375 PF00158 Sigma-54 interaction domain C3F36_04375 PF02954 Bacterial regulatory protein, Fis family C3F36_04380 PF00171 Aldehyde dehydrogenase family C3F36_04390 PF00892 EamA-like transporter family C3F36_04400 PF00248 Aldo/keto reductase family C3F36_04410 PF00072 Response regulator receiver domain C3F36_04410 PF12431 Transcriptional regulator C3F36_04415 PF00989 PAS fold C3F36_04415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_04415 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain C3F36_04415 PF17203 Single cache domain 3 C3F36_04420 PF01047 MarR family C3F36_04425 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_04425 PF00529 HlyD membrane-fusion protein of T1SS C3F36_04445 PF01679 Proteolipid membrane potential modulator C3F36_04455 PF03477 ATP cone domain C3F36_04455 PF13597 Anaerobic ribonucleoside-triphosphate reductase C3F36_04465 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3F36_04465 PF12826 Helix-hairpin-helix motif C3F36_04465 PF00533 BRCA1 C Terminus (BRCT) domain C3F36_04465 PF01653 NAD-dependent DNA ligase adenylation domain C3F36_04465 PF03120 NAD-dependent DNA ligase OB-fold domain C3F36_04470 PF04354 ZipA, C-terminal FtsZ-binding domain C3F36_04485 PF03458 UPF0126 domain C3F36_04495 PF05951 Bacterial protein of unknown function (DUF882) C3F36_04500 PF01471 Putative peptidoglycan binding domain C3F36_04500 PF03734 L,D-transpeptidase catalytic domain C3F36_04515 PF00535 Glycosyl transferase family 2 C3F36_04530 PF00128 Alpha amylase, catalytic domain C3F36_04540 PF00072 Response regulator receiver domain C3F36_04540 PF00196 Bacterial regulatory proteins, luxR family C3F36_04575 PF00990 Diguanylate cyclase, GGDEF domain C3F36_04580 PF11734 TilS substrate C-terminal domain C3F36_04580 PF01171 PP-loop family C3F36_04580 PF09179 TilS substrate binding domain C3F36_04585 PF01431 Peptidase family M13 C3F36_04585 PF05649 Peptidase family M13 C3F36_04595 PF16326 ABC transporter C-terminal domain C3F36_04595 PF00005 ABC transporter C3F36_04595 PF12848 ABC transporter C3F36_04605 PF01609 Transposase DDE domain C3F36_04605 PF13006 Insertion element 4 transposase N-terminal C3F36_04610 PF13520 Amino acid permease C3F36_04620 PF03466 LysR substrate binding domain C3F36_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_04630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit C3F36_04635 PF17657 Bacterial DNA polymerase III alpha subunit finger domain C3F36_04635 PF01336 OB-fold nucleic acid binding domain C3F36_04635 PF07733 Bacterial DNA polymerase III alpha NTPase domain C3F36_04635 PF14579 Helix-hairpin-helix motif C3F36_04635 PF02811 PHP domain C3F36_04640 PF01351 Ribonuclease HII C3F36_04645 PF02684 Lipid-A-disaccharide synthetase C3F36_04650 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 C3F36_04650 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_04655 PF07977 FabA-like domain C3F36_04660 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_04660 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD C3F36_04665 PF03938 Outer membrane protein (OmpH-like) C3F36_04670 PF07244 Surface antigen variable number repeat C3F36_04670 PF01103 Surface antigen C3F36_04675 PF02163 Peptidase family M50 C3F36_04675 PF17820 PDZ domain C3F36_04680 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain C3F36_04680 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase C3F36_04680 PF13288 DXP reductoisomerase C-terminal domain C3F36_04690 PF01255 Putative undecaprenyl diphosphate synthase C3F36_04695 PF01765 Ribosome recycling factor C3F36_04700 PF00696 Amino acid kinase family C3F36_04705 PF00889 Elongation factor TS C3F36_04710 PF00318 Ribosomal protein S2 C3F36_04715 PF00557 Metallopeptidase family M24 C3F36_04720 PF01842 ACT domain C3F36_04720 PF08335 GlnD PII-uridylyltransferase C3F36_04720 PF01966 HD domain C3F36_04720 PF01909 Nucleotidyltransferase domain C3F36_04725 PF14602 Hexapeptide repeat of succinyl-transferase C3F36_04725 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_04725 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal C3F36_04730 PF11944 Protein of unknown function (DUF3461) C3F36_04735 PF02378 Phosphotransferase system, EIIC C3F36_04735 PF00367 phosphotransferase system, EIIB C3F36_04740 PF07148 Maltose operon periplasmic protein precursor (MalM) C3F36_04745 PF02264 LamB porin C3F36_04750 PF00258 Flavodoxin C3F36_04755 PF00849 RNA pseudouridylate synthase C3F36_04760 PF04287 tRNA pseudouridine synthase C C3F36_04785 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) C3F36_04790 PF07348 Syd protein (SUKH-2) C3F36_04795 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term C3F36_04795 PF14489 QueF-like protein C3F36_04805 PF00990 Diguanylate cyclase, GGDEF domain C3F36_04810 PF03641 Possible lysine decarboxylase C3F36_04810 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases C3F36_04810 PF11892 Domain of unknown function (DUF3412) C3F36_04815 PF01367 5'-3' exonuclease, C-terminal SAM fold C3F36_04815 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3F36_04820 PF00180 Isocitrate/isopropylmalate dehydrogenase C3F36_04820 PF18324 Hypothetical protein TT1725 C3F36_04830 PF18125 RlmM ferredoxin-like domain C3F36_04830 PF01728 FtsJ-like methyltransferase C3F36_04845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_04845 PF03466 LysR substrate binding domain C3F36_04850 PF00672 HAMP domain C3F36_04850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_04855 PF00817 impB/mucB/samB family C3F36_04855 PF11799 impB/mucB/samB family C-terminal domain C3F36_04855 PF11798 IMS family HHH motif C3F36_04870 PF02424 ApbE family C3F36_04875 PF00970 Oxidoreductase FAD-binding domain C3F36_04875 PF00175 Oxidoreductase NAD-binding domain C3F36_04875 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_04880 PF02508 Rnf-Nqr subunit, membrane protein C3F36_04885 PF02508 Rnf-Nqr subunit, membrane protein C3F36_04890 PF04205 FMN-binding domain C3F36_04895 PF03116 NQR2, RnfD, RnfE family C3F36_04900 PF11973 NQRA C-terminal domain C3F36_04900 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) C3F36_04905 PF01722 BolA-like protein C3F36_04910 PF05175 Methyltransferase small domain C3F36_04920 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD C3F36_04930 PF07690 Major Facilitator Superfamily C3F36_04935 PF03502 Nucleoside-specific channel-forming protein, Tsx C3F36_04940 PF04461 Protein of unknown function (DUF520) C3F36_04945 PF08546 Ketopantoate reductase PanE/ApbA C terminal C3F36_04945 PF02558 Ketopantoate reductase PanE/ApbA C3F36_04950 PF01965 DJ-1/PfpI family C3F36_04985 PF04717 Type VI secretion system, phage-baseplate injector C3F36_04995 PF05638 Type VI secretion system effector, Hcp C3F36_05000 PF03472 Autoinducer binding domain C3F36_05000 PF00196 Bacterial regulatory proteins, luxR family C3F36_05005 PF00916 Sulfate permease family C3F36_05005 PF01740 STAS domain C3F36_05010 PF00512 His Kinase A (phospho-acceptor) domain C3F36_05010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_05010 PF00672 HAMP domain C3F36_05015 PF00072 Response regulator receiver domain C3F36_05015 PF00486 Transcriptional regulatory protein, C terminal C3F36_05020 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_05020 PF00529 HlyD membrane-fusion protein of T1SS C3F36_05025 PF00873 AcrB/AcrD/AcrF family C3F36_05050 PF00356 Bacterial regulatory proteins, lacI family C3F36_05055 PF13416 Bacterial extracellular solute-binding protein C3F36_05060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_05060 PF00672 HAMP domain C3F36_05065 PF00933 Glycosyl hydrolase family 3 N terminal domain C3F36_05075 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3F36_05080 PF02378 Phosphotransferase system, EIIC C3F36_05080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3F36_05085 PF00232 Glycosyl hydrolase family 1 C3F36_05090 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit C3F36_05100 PF00722 Glycosyl hydrolases family 16 C3F36_05115 PF13006 Insertion element 4 transposase N-terminal C3F36_05115 PF01609 Transposase DDE domain C3F36_05120 PF16363 GDP-mannose 4,6 dehydratase C3F36_05125 PF00042 Globin C3F36_05125 PF00970 Oxidoreductase FAD-binding domain C3F36_05125 PF00175 Oxidoreductase NAD-binding domain C3F36_05130 PF03063 Prismane/CO dehydrogenase family C3F36_05135 PF00210 Ferritin-like domain C3F36_05175 PF00106 short chain dehydrogenase C3F36_05185 PF03441 FAD binding domain of DNA photolyase C3F36_05185 PF00875 DNA photolyase C3F36_05190 PF13411 MerR HTH family regulatory protein C3F36_05195 PF08349 Protein of unknown function (DUF1722) C3F36_05220 PF00800 Prephenate dehydratase C3F36_05220 PF01817 Chorismate mutase type II C3F36_05250 PF09588 YqaJ-like viral recombinase domain C3F36_05265 PF01609 Transposase DDE domain C3F36_05290 PF01609 Transposase DDE domain C3F36_05300 PF02384 N-6 DNA Methylase C3F36_05325 PF00717 Peptidase S24-like C3F36_05330 PF11799 impB/mucB/samB family C-terminal domain C3F36_05330 PF11798 IMS family HHH motif C3F36_05330 PF00817 impB/mucB/samB family C3F36_05330 PF13438 Domain of unknown function (DUF4113) C3F36_05335 PF02661 Fic/DOC family C3F36_05335 PF13784 Fic/DOC family N-terminal C3F36_05355 PF00529 HlyD membrane-fusion protein of T1SS C3F36_05355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_05360 PF00005 ABC transporter C3F36_05360 PF00664 ABC transporter transmembrane region C3F36_05370 PF13181 Tetratricopeptide repeat C3F36_05380 PF03976 Polyphosphate kinase 2 (PPK2) C3F36_05385 PF07995 Glucose / Sorbosone dehydrogenase C3F36_05395 PF08220 DeoR-like helix-turn-helix domain C3F36_05395 PF00455 DeoR C terminal sensor domain C3F36_05400 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F36_05400 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F36_05405 PF07005 Sugar-binding N-terminal domain C3F36_05405 PF17042 Nucleotide-binding C-terminal domain C3F36_05410 PF00596 Class II Aldolase and Adducin N-terminal domain C3F36_05415 PF01261 Xylose isomerase-like TIM barrel C3F36_05420 PF01370 NAD dependent epimerase/dehydratase family C3F36_05425 PF02447 GntP family permease C3F36_05435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_05440 PF03573 outer membrane porin, OprD family C3F36_05445 PF00106 short chain dehydrogenase C3F36_05470 PF02074 Carboxypeptidase Taq (M32) metallopeptidase C3F36_05475 PF02805 Metal binding domain of Ada C3F36_05475 PF06029 AlkA N-terminal domain C3F36_05475 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F36_05475 PF12833 Helix-turn-helix domain C3F36_05480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F36_05480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3F36_05490 PF06906 Protein of unknown function (DUF1272) C3F36_05500 PF12392 Collagenase C3F36_05500 PF01136 Peptidase family U32 C3F36_05505 PF01810 LysE type translocator C3F36_05510 PF03466 LysR substrate binding domain C3F36_05510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_05550 PF07694 5TMR of 5TMR-LYT C3F36_05550 PF06580 Histidine kinase C3F36_05555 PF00072 Response regulator receiver domain C3F36_05555 PF04397 LytTr DNA-binding domain C3F36_05560 PF02554 Carbon starvation protein CstA C3F36_05560 PF13722 5TM C-terminal transporter carbon starvation CstA C3F36_05565 PF03575 Peptidase family S51 C3F36_05570 PF10415 Fumarase C C-terminus C3F36_05570 PF00206 Lyase C3F36_05580 PF00171 Aldehyde dehydrogenase family C3F36_05580 PF14850 DNA-binding domain of Proline dehydrogenase C3F36_05580 PF01619 Proline dehydrogenase C3F36_05580 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3F36_05585 PF00842 Alanine racemase, C-terminal domain C3F36_05585 PF01168 Alanine racemase, N-terminal domain C3F36_05590 PF03796 DnaB-like helicase C terminal domain C3F36_05590 PF00772 DnaB-like helicase N terminal domain C3F36_05600 PF02872 5'-nucleotidase, C-terminal domain C3F36_05600 PF00149 Calcineurin-like phosphoesterase C3F36_05620 PF02954 Bacterial regulatory protein, Fis family C3F36_05620 PF00072 Response regulator receiver domain C3F36_05620 PF00158 Sigma-54 interaction domain C3F36_05625 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase C3F36_05625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_05635 PF04102 SlyX C3F36_05640 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_05645 PF09526 Probable metal-binding protein (DUF2387) C3F36_05655 PF01584 CheW-like domain C3F36_05655 PF00072 Response regulator receiver domain C3F36_05660 PF00561 alpha/beta hydrolase fold C3F36_05670 PF06794 Uncharacterised protein family (UPF0270) C3F36_05675 PF00485 Phosphoribulokinase / Uridine kinase family C3F36_05690 PF02566 OsmC-like protein C3F36_05695 PF00027 Cyclic nucleotide-binding domain C3F36_05695 PF13545 Crp-like helix-turn-helix domain C3F36_05700 PF13847 Methyltransferase domain C3F36_05710 PF00989 PAS fold C3F36_05710 PF00512 His Kinase A (phospho-acceptor) domain C3F36_05710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_05715 PF12832 MFS_1 like family C3F36_05720 PF00593 TonB dependent receptor C3F36_05720 PF07715 TonB-dependent Receptor Plug Domain C3F36_05740 PF01243 Pyridoxamine 5'-phosphate oxidase C3F36_05745 PF06228 Haem utilisation ChuX/HutX C3F36_05755 PF01032 FecCD transport family C3F36_05760 PF00005 ABC transporter C3F36_05770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain C3F36_05770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain C3F36_05770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain C3F36_05775 PF01370 NAD dependent epimerase/dehydratase family C3F36_05790 PF00535 Glycosyl transferase family 2 C3F36_05800 PF01464 Transglycosylase SLT domain C3F36_05805 PF00005 ABC transporter C3F36_05805 PF12848 ABC transporter C3F36_05815 PF00860 Permease family C3F36_05820 PF05099 Tellurite resistance protein TerB C3F36_05820 PF00226 DnaJ domain C3F36_05825 PF00483 Nucleotidyl transferase C3F36_05830 PF01636 Phosphotransferase enzyme family C3F36_05835 PF03968 OstA-like protein C3F36_05835 PF04453 LPS transport system D C3F36_05840 PF09312 SurA N-terminal domain C3F36_05840 PF00639 PPIC-type PPIASE domain C3F36_05850 PF00398 Ribosomal RNA adenine dimethylase C3F36_05855 PF04379 ApaG domain C3F36_05860 PF00149 Calcineurin-like phosphoesterase C3F36_05870 PF00296 Luciferase-like monooxygenase C3F36_05885 PF01018 GTP1/OBG C3F36_05885 PF01926 50S ribosome-binding GTPase C3F36_05890 PF01016 Ribosomal L27 protein C3F36_05895 PF00829 Ribosomal prokaryotic L21 protein C3F36_05900 PF00348 Polyprenyl synthetase C3F36_05905 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) C3F36_05910 PF01145 SPFH domain / Band 7 family C3F36_05915 PF12221 Bacterial membrane protein N terminal C3F36_05915 PF01145 SPFH domain / Band 7 family C3F36_05920 PF16360 GTP-binding GTPase Middle Region C3F36_05920 PF13167 GTP-binding GTPase N-terminal C3F36_05920 PF01926 50S ribosome-binding GTPase C3F36_05925 PF17209 Hfq protein C3F36_05935 PF01119 DNA mismatch repair protein, C-terminal domain C3F36_05935 PF08676 MutL C terminal dimerisation domain C3F36_05940 PF01520 N-acetylmuramoyl-L-alanine amidase C3F36_05945 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE C3F36_05950 PF01256 Carbohydrate kinase C3F36_05950 PF03853 YjeF-related protein N-terminus C3F36_05955 PF08331 Domain of unknown function (DUF1730) C3F36_05960 PF00480 ROK family C3F36_05970 PF00005 ABC transporter C3F36_05970 PF09383 NIL domain C3F36_05975 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_05980 PF03180 NLPA lipoprotein C3F36_05985 PF02357 Transcription termination factor nusG C3F36_05990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_05995 PF00990 Diguanylate cyclase, GGDEF domain C3F36_05995 PF03707 Bacterial signalling protein N terminal repeat C3F36_05995 PF00563 EAL domain C3F36_06000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_06000 PF09456 RcsC Alpha-Beta-Loop (ABL) C3F36_06000 PF00072 Response regulator receiver domain C3F36_06000 PF00512 His Kinase A (phospho-acceptor) domain C3F36_06010 PF01966 HD domain C3F36_06015 PF00072 Response regulator receiver domain C3F36_06015 PF00989 PAS fold C3F36_06015 PF18415 Histidine kinase receptor ArcB trans-membrane domain C3F36_06015 PF00512 His Kinase A (phospho-acceptor) domain C3F36_06015 PF01627 Hpt domain C3F36_06015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_06035 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) C3F36_06040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_06040 PF03466 LysR substrate binding domain C3F36_06050 PF01259 SAICAR synthetase C3F36_06055 PF06804 NlpB/DapX lipoprotein C3F36_06060 PF00701 Dihydrodipicolinate synthetase family C3F36_06065 PF01842 ACT domain C3F36_06070 PF00578 AhpC/TSA family C3F36_06075 PF03887 YfbU domain C3F36_06080 PF04217 Protein of unknown function, DUF412 C3F36_06085 PF00871 Acetokinase family C3F36_06090 PF01515 Phosphate acetyl/butaryl transferase C3F36_06090 PF07085 DRTGG domain C3F36_06095 PF10369 Small subunit of acetolactate synthase C3F36_06100 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F36_06100 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F36_06100 PF00205 Thiamine pyrophosphate enzyme, central domain C3F36_06115 PF01569 PAP2 superfamily C3F36_06125 PF08502 LeuA allosteric (dimerisation) domain C3F36_06125 PF00682 HMGL-like C3F36_06130 PF00180 Isocitrate/isopropylmalate dehydrogenase C3F36_06135 PF00330 Aconitase family (aconitate hydratase) C3F36_06140 PF00694 Aconitase C-terminal domain C3F36_06160 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_06165 PF00005 ABC transporter C3F36_06170 PF02562 PhoH-like protein C3F36_06170 PF13638 PIN domain C3F36_06180 PF08343 Ribonucleotide reductase N-terminal C3F36_06180 PF00317 Ribonucleotide reductase, all-alpha domain C3F36_06180 PF02867 Ribonucleotide reductase, barrel domain C3F36_06185 PF00665 Integrase core domain C3F36_06190 PF01695 IstB-like ATP binding protein C3F36_06200 PF01695 IstB-like ATP binding protein C3F36_06205 PF00665 Integrase core domain C3F36_06230 PF01521 Iron-sulphur cluster biosynthesis C3F36_06240 PF00654 Voltage gated chloride channel C3F36_06245 PF00202 Aminotransferase class-III C3F36_06260 PF01569 PAP2 superfamily C3F36_06270 PF03466 LysR substrate binding domain C3F36_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_06275 PF00893 Small Multidrug Resistance protein C3F36_06280 PF00893 Small Multidrug Resistance protein C3F36_06285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F36_06290 PF00912 Transglycosylase C3F36_06290 PF14814 Bifunctional transglycosylase second domain C3F36_06290 PF00905 Penicillin binding protein transpeptidase domain C3F36_06295 PF08482 ATP-dependent helicase C-terminal C3F36_06295 PF00271 Helicase conserved C-terminal domain C3F36_06295 PF04408 Helicase associated domain (HA2) C3F36_06295 PF00270 DEAD/DEAH box helicase C3F36_06305 PF03749 Sugar fermentation stimulation protein RE domain C3F36_06305 PF17746 SfsA N-terminal OB domain C3F36_06310 PF01258 Prokaryotic dksA/traR C4-type zinc finger C3F36_06315 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F36_06320 PF12626 Polymerase A arginine-rich C-terminus C3F36_06320 PF01743 Poly A polymerase head domain C3F36_06320 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F36_06325 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3F36_06330 PF02548 Ketopantoate hydroxymethyltransferase C3F36_06335 PF02569 Pantoate-beta-alanine ligase C3F36_06345 PF01061 ABC-2 type transporter C3F36_06350 PF00005 ABC transporter C3F36_06355 PF00156 Phosphoribosyl transferase domain C3F36_06360 PF00440 Bacterial regulatory proteins, tetR family C3F36_06365 PF02441 Flavoprotein C3F36_06370 PF08245 Mur ligase middle domain C3F36_06370 PF02875 Mur ligase family, glutamate ligase domain C3F36_06370 PF01225 Mur ligase family, catalytic domain C3F36_06375 PF00719 Inorganic pyrophosphatase C3F36_06390 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) C3F36_06405 PF00005 ABC transporter C3F36_06430 PF13737 Transposase DDE domain C3F36_06440 PF00665 Integrase core domain C3F36_06445 PF01695 IstB-like ATP binding protein C3F36_06470 PF02080 TrkA-C domain C3F36_06470 PF03600 Citrate transporter C3F36_06475 PF00009 Elongation factor Tu GTP binding domain C3F36_06480 PF01507 Phosphoadenosine phosphosulfate reductase family C3F36_06485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F36_06485 PF10414 Sirohaem synthase dimerisation region C3F36_06485 PF14824 Sirohaem biosynthesis protein central C3F36_06490 PF16200 C-terminal region of band_7 C3F36_06490 PF01145 SPFH domain / Band 7 family C3F36_06495 PF01957 NfeD-like C-terminal, partner-binding C3F36_06505 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3F36_06505 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3F36_06510 PF07690 Major Facilitator Superfamily C3F36_06515 PF01725 Ham1 family C3F36_06520 PF04055 Radical SAM superfamily C3F36_06520 PF06969 HemN C-terminal domain C3F36_06525 PF03889 Alternative ribosome-rescue factor A C3F36_06535 PF13411 MerR HTH family regulatory protein C3F36_06540 PF02142 MGS-like domain C3F36_06540 PF01808 AICARFT/IMPCHase bienzyme C3F36_06545 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain C3F36_06545 PF02844 Phosphoribosylglycinamide synthetase, N domain C3F36_06545 PF02843 Phosphoribosylglycinamide synthetase, C domain C3F36_06560 PF00128 Alpha amylase, catalytic domain C3F36_06575 PF04542 Sigma-70 region 2 C3F36_06575 PF04546 Sigma-70, non-essential region C3F36_06575 PF04545 Sigma-70, region 4 C3F36_06575 PF04539 Sigma-70 region 3 C3F36_06575 PF03979 Sigma-70 factor, region 1.1 C3F36_06575 PF00140 Sigma-70 factor, region 1.2 C3F36_06580 PF08278 DNA primase DnaG DnaB-binding C3F36_06580 PF10410 DnaB-helicase binding domain of primase C3F36_06580 PF08275 DNA primase catalytic core, N-terminal domain C3F36_06580 PF01807 CHC2 zinc finger C3F36_06585 PF09424 Yqey-like protein C3F36_06590 PF01165 Ribosomal protein S21 C3F36_06595 PF00814 Glycoprotease family C3F36_06600 PF04539 Sigma-70 region 3 C3F36_06600 PF04545 Sigma-70, region 4 C3F36_06600 PF04542 Sigma-70 region 2 C3F36_06600 PF00140 Sigma-70 factor, region 1.2 C3F36_06605 PF01476 LysM domain C3F36_06605 PF01551 Peptidase family M23 C3F36_06610 PF09335 SNARE associated Golgi protein C3F36_06620 PF01975 Survival protein SurE C3F36_06625 PF01142 tRNA pseudouridine synthase D (TruD) C3F36_06630 PF02542 YgbB family C3F36_06635 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase C3F36_06640 PF04977 Septum formation initiator C3F36_06645 PF00113 Enolase, C-terminal TIM barrel domain C3F36_06645 PF03952 Enolase, N-terminal domain C3F36_06650 PF06418 CTP synthase N-terminus C3F36_06650 PF00117 Glutamine amidotransferase class-I C3F36_06655 PF03819 MazG nucleotide pyrophosphohydrolase domain C3F36_06660 PF04607 Region found in RelA / SpoT proteins C3F36_06660 PF13291 ACT domain C3F36_06660 PF02824 TGS domain C3F36_06665 PF01938 TRAM domain C3F36_06665 PF05958 tRNA (Uracil-5-)-methyltransferase C3F36_06670 PF00672 HAMP domain C3F36_06670 PF00512 His Kinase A (phospho-acceptor) domain C3F36_06670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_06670 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) C3F36_06670 PF00072 Response regulator receiver domain C3F36_06670 PF01627 Hpt domain C3F36_06675 PF07308 Protein of unknown function (DUF1456) C3F36_06680 PF01510 N-acetylmuramoyl-L-alanine amidase C3F36_06685 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ C3F36_06690 PF02565 Recombination protein O C terminal C3F36_06690 PF11967 Recombination protein O N terminal C3F36_06695 PF07650 KH domain C3F36_06695 PF01926 50S ribosome-binding GTPase C3F36_06700 PF00035 Double-stranded RNA binding motif C3F36_06700 PF14622 Ribonuclease-III-like C3F36_06705 PF10502 Signal peptidase, peptidase S26 C3F36_06710 PF00679 Elongation factor G C-terminus C3F36_06710 PF00009 Elongation factor Tu GTP binding domain C3F36_06710 PF03144 Elongation factor Tu domain 2 C3F36_06710 PF06421 GTP-binding protein LepA C-terminus C3F36_06720 PF17188 MucB/RseB C-terminal domain C3F36_06720 PF03888 MucB/RseB N-terminal domain C3F36_06725 PF03872 Anti sigma-E protein RseA, N-terminal domain C3F36_06725 PF03873 Anti sigma-E protein RseA, C-terminal domain C3F36_06730 PF08281 Sigma-70, region 4 C3F36_06730 PF04542 Sigma-70 region 2 C3F36_06735 PF02910 Fumarate reductase flavoprotein C-term C3F36_06735 PF00890 FAD binding domain C3F36_06745 PF03937 Flavinator of succinate dehydrogenase C3F36_06750 PF01571 Aminomethyltransferase folate-binding domain C3F36_06755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_06755 PF03466 LysR substrate binding domain C3F36_06770 PF03091 CutA1 divalent ion tolerance protein C3F36_06775 PF02683 Cytochrome C biogenesis protein transmembrane region C3F36_06775 PF11412 Disulphide bond corrector protein DsbC C3F36_06785 PF01266 FAD dependent oxidoreductase C3F36_06790 PF01116 Fructose-bisphosphate aldolase class-II C3F36_06795 PF00162 Phosphoglycerate kinase C3F36_06800 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F36_06800 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F36_06805 PF00480 ROK family C3F36_06810 PF01208 Uroporphyrinogen decarboxylase (URO-D) C3F36_06815 PF09297 NADH pyrophosphatase zinc ribbon domain C3F36_06815 PF00293 NUDIX domain C3F36_06820 PF08239 Bacterial SH3 domain C3F36_06825 PF00520 Ion transport protein C3F36_06825 PF00027 Cyclic nucleotide-binding domain C3F36_06830 PF02743 Cache domain C3F36_06830 PF00672 HAMP domain C3F36_06830 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_06840 PF03710 Glutamate-ammonia ligase adenylyltransferase C3F36_06840 PF08335 GlnD PII-uridylyltransferase C3F36_06860 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_06865 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_06870 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_06875 PF00005 ABC transporter C3F36_06880 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_06885 PF13194 Domain of unknown function (DUF4010) C3F36_06890 PF12464 Maltose acetyltransferase C3F36_06890 PF14602 Hexapeptide repeat of succinyl-transferase C3F36_06920 PF14552 Tautomerase enzyme C3F36_06930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_06930 PF03466 LysR substrate binding domain C3F36_06935 PF00206 Lyase C3F36_06935 PF14698 Argininosuccinate lyase C-terminal C3F36_06940 PF00764 Arginosuccinate synthase C3F36_06945 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F36_06945 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F36_06950 PF00696 Amino acid kinase family C3F36_06955 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F36_06955 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F36_06960 PF07687 Peptidase dimerisation domain C3F36_06960 PF01546 Peptidase family M20/M25/M40 C3F36_06965 PF00311 Phosphoenolpyruvate carboxylase C3F36_06970 PF05231 MASE1 C3F36_06970 PF00563 EAL domain C3F36_06970 PF00990 Diguanylate cyclase, GGDEF domain C3F36_06970 PF08447 PAS fold C3F36_06970 PF08448 PAS fold C3F36_06970 PF13426 PAS domain C3F36_06975 PF04073 Aminoacyl-tRNA editing domain C3F36_06995 PF00155 Aminotransferase class I and II C3F36_06995 PF00392 Bacterial regulatory proteins, gntR family C3F36_07010 PF03466 LysR substrate binding domain C3F36_07010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_07015 PF03788 LrgA family C3F36_07020 PF04172 LrgB-like family C3F36_07025 PF03447 Homoserine dehydrogenase, NAD binding domain C3F36_07025 PF00696 Amino acid kinase family C3F36_07025 PF00742 Homoserine dehydrogenase C3F36_07030 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F36_07035 PF01340 Met Apo-repressor, MetJ C3F36_07045 PF01588 Putative tRNA binding domain C3F36_07050 PF03222 Tryptophan/tyrosine permease family C3F36_07055 PF00459 Inositol monophosphatase family C3F36_07060 PF00293 NUDIX domain C3F36_07065 PF13419 Haloacid dehalogenase-like hydrolase C3F36_07070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F36_07075 PF03466 LysR substrate binding domain C3F36_07075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_07080 PF00579 tRNA synthetases class I (W and Y) C3F36_07080 PF01479 S4 domain C3F36_07085 PF00196 Bacterial regulatory proteins, luxR family C3F36_07090 PF01203 Type II secretion system (T2SS), protein N C3F36_07095 PF04612 Type II secretion system (T2SS), protein M C3F36_07100 PF05134 Type II secretion system (T2SS), protein L C3F36_07100 PF12693 GspL periplasmic domain C3F36_07105 PF03934 Type II secretion system (T2SS), protein K C3F36_07115 PF11612 Type II secretion system (T2SS), protein J C3F36_07115 PF07963 Prokaryotic N-terminal methylation motif C3F36_07120 PF02501 Type II secretion system (T2SS), protein I C3F36_07120 PF07963 Prokaryotic N-terminal methylation motif C3F36_07125 PF12019 Type II transport protein GspH C3F36_07125 PF07963 Prokaryotic N-terminal methylation motif C3F36_07130 PF08334 Type II secretion system (T2SS), protein G C3F36_07130 PF07963 Prokaryotic N-terminal methylation motif C3F36_07135 PF00482 Type II secretion system (T2SS), protein F C3F36_07140 PF00437 Type II/IV secretion system protein C3F36_07145 PF00263 Bacterial type II and III secretion system protein C3F36_07145 PF03958 Bacterial type II/III secretion system short domain C3F36_07150 PF11356 Type II secretion system protein C C3F36_07155 PF01479 S4 domain C3F36_07160 PF01430 Hsp33 protein C3F36_07165 PF01293 Phosphoenolpyruvate carboxykinase C3F36_07170 PF00392 Bacterial regulatory proteins, gntR family C3F36_07175 PF00557 Metallopeptidase family M24 C3F36_07175 PF01321 Creatinase/Prolidase N-terminal domain C3F36_07180 PF00583 Acetyltransferase (GNAT) family C3F36_07185 PF05433 Glycine zipper 2TM domain C3F36_07190 PF01928 CYTH domain C3F36_07195 PF01865 Protein of unknown function DUF47 C3F36_07200 PF01384 Phosphate transporter family C3F36_07205 PF01743 Poly A polymerase head domain C3F36_07205 PF01966 HD domain C3F36_07205 PF12627 Probable RNA and SrmB- binding site of polymerase A C3F36_07210 PF13401 AAA domain C3F36_07210 PF01471 Putative peptidoglycan binding domain C3F36_07215 PF16537 Type II secretion system protein B C3F36_07220 PF10576 Iron-sulfur binding domain of endonuclease III C3F36_07220 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F36_07220 PF14815 NUDIX domain C3F36_07220 PF00633 Helix-hairpin-helix motif C3F36_07225 PF04362 Bacterial Fe(2+) trafficking C3F36_07230 PF01464 Transglycosylase SLT domain C3F36_07230 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain C3F36_07240 PF00657 GDSL-like Lipase/Acylhydrolase C3F36_07245 PF01389 OmpA-like transmembrane domain C3F36_07245 PF00691 OmpA family C3F36_07250 PF03886 ABC-type transport auxiliary lipoprotein component C3F36_07255 PF02470 MlaD protein C3F36_07260 PF04403 Paraquat-inducible protein A C3F36_07265 PF17209 Hfq protein C3F36_07270 PF13419 Haloacid dehalogenase-like hydrolase C3F36_07275 PF00563 EAL domain C3F36_07275 PF00990 Diguanylate cyclase, GGDEF domain C3F36_07275 PF01590 GAF domain C3F36_07275 PF00360 Phytochrome region C3F36_07280 PF00701 Dihydrodipicolinate synthetase family C3F36_07285 PF05175 Methyltransferase small domain C3F36_07285 PF08468 Methyltransferase small domain N-terminal C3F36_07290 PF00483 Nucleotidyl transferase C3F36_07295 PF00534 Glycosyl transferases group 1 C3F36_07295 PF08323 Starch synthase catalytic domain C3F36_07335 PF03553 Na+/H+ antiporter family C3F36_07340 PF03466 LysR substrate binding domain C3F36_07340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_07345 PF13416 Bacterial extracellular solute-binding protein C3F36_07355 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_07360 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_07365 PF00171 Aldehyde dehydrogenase family C3F36_07370 PF01040 UbiA prenyltransferase family C3F36_07395 PF00510 Cytochrome c oxidase subunit III C3F36_07400 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 C3F36_07410 PF00116 Cytochrome C oxidase subunit II, periplasmic domain C3F36_07410 PF02790 Cytochrome C oxidase subunit II, transmembrane domain C3F36_07415 PF05127 Helicase C3F36_07415 PF08351 Domain of unknown function (DUF1726) C3F36_07415 PF17176 tRNA-binding domain C3F36_07415 PF13718 GNAT acetyltransferase 2 C3F36_07430 PF00210 Ferritin-like domain C3F36_07435 PF02142 MGS-like domain C3F36_07450 PF17763 Glutaminase/Asparaginase C-terminal domain C3F36_07450 PF00710 Asparaginase, N-terminal C3F36_07465 PF00356 Bacterial regulatory proteins, lacI family C3F36_07470 PF02378 Phosphotransferase system, EIIC C3F36_07470 PF00367 phosphotransferase system, EIIB C3F36_07475 PF11941 Domain of unknown function (DUF3459) C3F36_07475 PF00128 Alpha amylase, catalytic domain C3F36_07480 PF12464 Maltose acetyltransferase C3F36_07480 PF14602 Hexapeptide repeat of succinyl-transferase C3F36_07490 PF00892 EamA-like transporter family C3F36_07570 PF05154 TM2 domain C3F36_07580 PF13356 Arm DNA-binding domain C3F36_07580 PF14659 Phage integrase, N-terminal SAM-like domain C3F36_07580 PF00589 Phage integrase family C3F36_07600 PF01695 IstB-like ATP binding protein C3F36_07605 PF00665 Integrase core domain C3F36_07640 PF02660 Glycerol-3-phosphate acyltransferase C3F36_07645 PF02152 Dihydroneopterin aldolase C3F36_07650 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) C3F36_07660 PF07690 Major Facilitator Superfamily C3F36_07675 PF01548 Transposase C3F36_07675 PF02371 Transposase IS116/IS110/IS902 family C3F36_07680 PF07683 Cobalamin synthesis protein cobW C-terminal domain C3F36_07680 PF02492 CobW/HypB/UreG, nucleotide-binding domain C3F36_07685 PF01565 FAD binding domain C3F36_07685 PF04030 D-arabinono-1,4-lactone oxidase C3F36_07690 PF01810 LysE type translocator C3F36_07695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_07695 PF03466 LysR substrate binding domain C3F36_07700 PF12792 CSS motif domain associated with EAL C3F36_07700 PF00563 EAL domain C3F36_07705 PF00330 Aconitase family (aconitate hydratase) C3F36_07705 PF11791 Aconitate B N-terminal domain C3F36_07705 PF06434 Aconitate hydratase 2 N-terminus C3F36_07710 PF01734 Patatin-like phospholipase C3F36_07715 PF00672 HAMP domain C3F36_07715 PF12729 Four helix bundle sensory module for signal transduction C3F36_07715 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_07720 PF00672 HAMP domain C3F36_07720 PF12729 Four helix bundle sensory module for signal transduction C3F36_07720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_07730 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F36_07730 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_07735 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F36_07735 PF00364 Biotin-requiring enzyme C3F36_07735 PF02817 e3 binding domain C3F36_07740 PF00456 Transketolase, thiamine diphosphate binding domain C3F36_07740 PF17831 Pyruvate dehydrogenase E1 component middle domain C3F36_07745 PF07729 FCD domain C3F36_07745 PF00392 Bacterial regulatory proteins, gntR family C3F36_07755 PF01510 N-acetylmuramoyl-L-alanine amidase C3F36_07765 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain C3F36_07765 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain C3F36_07770 PF07963 Prokaryotic N-terminal methylation motif C3F36_07775 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain C3F36_07775 PF00437 Type II/IV secretion system protein C3F36_07780 PF00482 Type II secretion system (T2SS), protein F C3F36_07785 PF06750 Bacterial Peptidase A24 N-terminal domain C3F36_07785 PF01478 Type IV leader peptidase family C3F36_07790 PF01121 Dephospho-CoA kinase C3F36_07795 PF07072 Cell division protein C3F36_07800 PF03884 DNA gyrase inhibitor YacG C3F36_07805 PF00293 NUDIX domain C3F36_07815 PF02810 SEC-C motif C3F36_07815 PF07517 SecA DEAD-like domain C3F36_07815 PF01043 SecA preprotein cross-linking domain C3F36_07815 PF07516 SecA Wing and Scaffold domain C3F36_07825 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase C3F36_07830 PF12327 FtsZ family, C-terminal domain C3F36_07830 PF00091 Tubulin/FtsZ family, GTPase domain C3F36_07835 PF02491 SHS2 domain inserted in FTSA C3F36_07840 PF08478 POTRA domain, FtsQ-type C3F36_07840 PF03799 Cell division protein FtsQ C3F36_07845 PF08245 Mur ligase middle domain C3F36_07845 PF02875 Mur ligase family, glutamate ligase domain C3F36_07845 PF01225 Mur ligase family, catalytic domain C3F36_07850 PF04101 Glycosyltransferase family 28 C-terminal domain C3F36_07850 PF03033 Glycosyltransferase family 28 N-terminal domain C3F36_07855 PF01098 Cell cycle protein C3F36_07860 PF08245 Mur ligase middle domain C3F36_07860 PF02875 Mur ligase family, glutamate ligase domain C3F36_07865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 C3F36_07865 PF00953 Glycosyl transferase family 4 C3F36_07870 PF01225 Mur ligase family, catalytic domain C3F36_07870 PF08245 Mur ligase middle domain C3F36_07870 PF02875 Mur ligase family, glutamate ligase domain C3F36_07875 PF08245 Mur ligase middle domain C3F36_07875 PF01225 Mur ligase family, catalytic domain C3F36_07875 PF02875 Mur ligase family, glutamate ligase domain C3F36_07880 PF00905 Penicillin binding protein transpeptidase domain C3F36_07880 PF03717 Penicillin-binding Protein dimerisation domain C3F36_07885 PF04999 Cell division protein FtsL C3F36_07890 PF01795 MraW methylase family C3F36_07895 PF02381 MraZ protein, putative antitoxin-like C3F36_07905 PF01464 Transglycosylase SLT domain C3F36_07905 PF01476 LysM domain C3F36_07915 PF13677 Membrane MotB of proton-channel complex MotA/MotB C3F36_07915 PF00691 OmpA family C3F36_07920 PF01618 MotA/TolQ/ExbB proton channel family C3F36_07925 PF04542 Sigma-70 region 2 C3F36_07925 PF04545 Sigma-70, region 4 C3F36_07945 PF02561 Flagellar protein FliS C3F36_07950 PF02465 Flagellar hook-associated protein 2 N-terminus C3F36_07950 PF07195 Flagellar hook-associated protein 2 C-terminus C3F36_07950 PF07196 Flagellin hook IN motif C3F36_07955 PF00700 Bacterial flagellin C-terminal helical region C3F36_07955 PF00669 Bacterial flagellin N-terminal helical region C3F36_07960 PF00700 Bacterial flagellin C-terminal helical region C3F36_07960 PF00669 Bacterial flagellin N-terminal helical region C3F36_07980 PF00669 Bacterial flagellin N-terminal helical region C3F36_07985 PF00460 Flagella basal body rod protein C3F36_07985 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_07995 PF02119 Flagellar P-ring protein C3F36_08000 PF02107 Flagellar L-ring protein C3F36_08005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_08005 PF00460 Flagella basal body rod protein C3F36_08010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_08010 PF00460 Flagella basal body rod protein C3F36_08015 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_08015 PF00460 Flagella basal body rod protein C3F36_08015 PF07559 Flagellar basal body protein FlaE C3F36_08020 PF03963 Flagellar hook capping protein - N-terminal region C3F36_08020 PF13861 FlgD Tudor-like domain C3F36_08020 PF13860 FlgD Ig-like domain C3F36_08025 PF00460 Flagella basal body rod protein C3F36_08025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal C3F36_08030 PF00460 Flagella basal body rod protein C3F36_08040 PF04316 Anti-sigma-28 factor, FlgM C3F36_08055 PF18269 T3SS EscN ATPase C-terminal domain C3F36_08055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F36_08065 PF14842 FliG N-terminal domain C3F36_08065 PF01706 FliG C-terminal domain C3F36_08065 PF14841 FliG middle domain C3F36_08070 PF01514 Secretory protein of YscJ/FliF family C3F36_08070 PF08345 Flagellar M-ring protein C-terminal C3F36_08075 PF02049 Flagellar hook-basal body complex protein FliE C3F36_08080 PF02954 Bacterial regulatory protein, Fis family C3F36_08080 PF00072 Response regulator receiver domain C3F36_08080 PF00158 Sigma-54 interaction domain C3F36_08085 PF00771 FHIPEP family C3F36_08090 PF01312 FlhB HrpN YscU SpaS Family C3F36_08095 PF01311 Bacterial export proteins, family 1 C3F36_08100 PF01313 Bacterial export proteins, family 3 C3F36_08105 PF00813 FliP family C3F36_08110 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3F36_08125 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F36_08130 PF04348 LppC putative lipoprotein C3F36_08135 PF02021 Uncharacterised protein family UPF0102 C3F36_08140 PF13580 SIS domain C3F36_08145 PF04972 BON domain C3F36_08150 PF04386 Stringent starvation protein B C3F36_08155 PF00043 Glutathione S-transferase, C-terminal domain C3F36_08155 PF02798 Glutathione S-transferase, N-terminal domain C3F36_08160 PF02167 Cytochrome C1 family C3F36_08165 PF00033 Cytochrome b/b6/petB C3F36_08165 PF00032 Cytochrome b(C-terminal)/b6/petD C3F36_08170 PF00355 Rieske [2Fe-2S] domain C3F36_08170 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal C3F36_08175 PF00380 Ribosomal protein S9/S16 C3F36_08180 PF00572 Ribosomal protein L13 C3F36_08185 PF03969 AFG1-like ATPase C3F36_08195 PF13180 PDZ domain C3F36_08195 PF00595 PDZ domain C3F36_08200 PF13180 PDZ domain C3F36_08230 PF01979 Amidohydrolase family C3F36_08235 PF03841 L-seryl-tRNA selenium transferase C3F36_08240 PF07071 KDGP aldolase C3F36_08245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F36_08250 PF00381 PTS HPr component phosphorylation site C3F36_08255 PF03668 P-loop ATPase protein family C3F36_08260 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F36_08265 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C3F36_08270 PF00309 Sigma-54 factor, Activator interacting domain (AID) C3F36_08270 PF04963 Sigma-54 factor, core binding domain C3F36_08270 PF04552 Sigma-54, DNA binding domain C3F36_08275 PF00005 ABC transporter C3F36_08275 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F36_08280 PF03968 OstA-like protein C3F36_08295 PF01380 SIS domain C3F36_08295 PF00571 CBS domain C3F36_08300 PF00005 ABC transporter C3F36_08305 PF02405 Permease MlaE C3F36_08310 PF02470 MlaD protein C3F36_08315 PF05494 MlaC protein C3F36_08325 PF01722 BolA-like protein C3F36_08330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F36_08335 PF01523 Putative modulator of DNA gyrase C3F36_08340 PF04751 Protein of unknown function (DUF615) C3F36_08350 PF04363 Protein of unknown function (DUF496) C3F36_08380 PF07883 Cupin domain C3F36_08380 PF01381 Helix-turn-helix C3F36_08385 PF03594 Benzoate membrane transport protein C3F36_08395 PF02219 Methylenetetrahydrofolate reductase C3F36_08410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_08410 PF12729 Four helix bundle sensory module for signal transduction C3F36_08410 PF00672 HAMP domain C3F36_08415 PF03922 OmpW family C3F36_08420 PF05598 Transposase domain (DUF772) C3F36_08420 PF01609 Transposase DDE domain C3F36_08430 PF17760 UvrA interaction domain C3F36_08430 PF17755 UvrA DNA-binding domain C3F36_08430 PF00005 ABC transporter C3F36_08435 PF00196 Bacterial regulatory proteins, luxR family C3F36_08440 PF00436 Single-strand binding protein family C3F36_08460 PF00313 'Cold-shock' DNA-binding domain C3F36_08465 PF00672 HAMP domain C3F36_08465 PF00512 His Kinase A (phospho-acceptor) domain C3F36_08465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_08470 PF00486 Transcriptional regulatory protein, C terminal C3F36_08470 PF00072 Response regulator receiver domain C3F36_08480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_08480 PF00672 HAMP domain C3F36_08490 PF08448 PAS fold C3F36_08490 PF00990 Diguanylate cyclase, GGDEF domain C3F36_08495 PF00543 Nitrogen regulatory protein P-II C3F36_08500 PF00909 Ammonium Transporter Family C3F36_08520 PF13538 UvrD-like helicase C-terminal domain C3F36_08525 PF12705 PD-(D/E)XK nuclease superfamily C3F36_08525 PF00580 UvrD/REP helicase N-terminal domain C3F36_08525 PF13361 UvrD-like helicase C-terminal domain C3F36_08530 PF17946 RecC C-terminal domain C3F36_08535 PF07681 DoxX C3F36_08540 PF17954 Quercetinase C-terminal cupin domain C3F36_08540 PF02678 Pirin C3F36_08550 PF03466 LysR substrate binding domain C3F36_08550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_08560 PF00392 Bacterial regulatory proteins, gntR family C3F36_08560 PF07702 UTRA domain C3F36_08575 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_08585 PF00005 ABC transporter C3F36_08585 PF08402 TOBE domain C3F36_08595 PF00990 Diguanylate cyclase, GGDEF domain C3F36_08595 PF00072 Response regulator receiver domain C3F36_08620 PF06628 Catalase-related immune-responsive C3F36_08620 PF00199 Catalase C3F36_08640 PF00293 NUDIX domain C3F36_08645 PF01594 AI-2E family transporter C3F36_08655 PF05598 Transposase domain (DUF772) C3F36_08655 PF01609 Transposase DDE domain C3F36_08670 PF02733 Dak1 domain C3F36_08675 PF00860 Permease family C3F36_08685 PF00665 Integrase core domain C3F36_08690 PF01695 IstB-like ATP binding protein C3F36_08730 PF00009 Elongation factor Tu GTP binding domain C3F36_08730 PF03143 Elongation factor Tu C-terminal domain C3F36_08730 PF03144 Elongation factor Tu domain 2 C3F36_08735 PF14492 Elongation Factor G, domain II C3F36_08735 PF03764 Elongation factor G, domain IV C3F36_08735 PF00679 Elongation factor G C-terminus C3F36_08735 PF03144 Elongation factor Tu domain 2 C3F36_08735 PF00009 Elongation factor Tu GTP binding domain C3F36_08740 PF00177 Ribosomal protein S7p/S5e C3F36_08745 PF00164 Ribosomal protein S12/S23 C3F36_08750 PF04077 DsrH like protein C3F36_08755 PF02635 DsrE/DsrF-like family C3F36_08760 PF02635 DsrE/DsrF-like family C3F36_08765 PF01042 Endoribonuclease L-PSP C3F36_08770 PF08348 YheO-like PAS domain C3F36_08770 PF13309 HTH domain C3F36_08775 PF05000 RNA polymerase Rpb1, domain 4 C3F36_08775 PF00623 RNA polymerase Rpb1, domain 2 C3F36_08775 PF04998 RNA polymerase Rpb1, domain 5 C3F36_08775 PF04983 RNA polymerase Rpb1, domain 3 C3F36_08775 PF04997 RNA polymerase Rpb1, domain 1 C3F36_08780 PF04563 RNA polymerase beta subunit C3F36_08780 PF04565 RNA polymerase Rpb2, domain 3 C3F36_08780 PF00562 RNA polymerase Rpb2, domain 6 C3F36_08780 PF04561 RNA polymerase Rpb2, domain 2 C3F36_08780 PF10385 RNA polymerase beta subunit external 1 domain C3F36_08780 PF04560 RNA polymerase Rpb2, domain 7 C3F36_08785 PF16320 Ribosomal protein L7/L12 dimerisation domain C3F36_08785 PF00542 Ribosomal protein L7/L12 C-terminal domain C3F36_08790 PF00466 Ribosomal protein L10 C3F36_08795 PF00687 Ribosomal protein L1p/L10e family C3F36_08800 PF00298 Ribosomal protein L11, RNA binding domain C3F36_08800 PF03946 Ribosomal protein L11, N-terminal domain C3F36_08805 PF00467 KOW motif C3F36_08805 PF02357 Transcription termination factor nusG C3F36_08810 PF00584 SecE/Sec61-gamma subunits of protein translocation complex C3F36_08820 PF00009 Elongation factor Tu GTP binding domain C3F36_08820 PF03143 Elongation factor Tu C-terminal domain C3F36_08820 PF03144 Elongation factor Tu domain 2 C3F36_08835 PF00485 Phosphoribulokinase / Uridine kinase family C3F36_08840 PF08279 HTH domain C3F36_08840 PF02237 Biotin protein ligase C terminal domain C3F36_08840 PF03099 Biotin/lipoate A/B protein ligase family C3F36_08845 PF01565 FAD binding domain C3F36_08845 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain C3F36_08850 PF02254 TrkA-N domain C3F36_08850 PF02080 TrkA-C domain C3F36_08855 PF02386 Cation transport protein C3F36_08860 PF01131 DNA topoisomerase C3F36_08860 PF01751 Toprim domain C3F36_08865 PF03264 NapC/NirT cytochrome c family, N-terminal region C3F36_08870 PF01568 Molydopterin dinucleotide binding domain C3F36_08870 PF00384 Molybdopterin oxidoreductase C3F36_08870 PF18364 Molybdopterin oxidoreductase N-terminal domain C3F36_08880 PF08918 PhoQ Sensor C3F36_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_08885 PF00486 Transcriptional regulatory protein, C terminal C3F36_08885 PF00072 Response regulator receiver domain C3F36_08895 PF01609 Transposase DDE domain C3F36_08905 PF01794 Ferric reductase like transmembrane component C3F36_08910 PF00174 Oxidoreductase molybdopterin binding domain C3F36_08920 PF06496 Protein of unknown function (DUF1097) C3F36_08925 PF00072 Response regulator receiver domain C3F36_08925 PF00158 Sigma-54 interaction domain C3F36_08935 PF00512 His Kinase A (phospho-acceptor) domain C3F36_08935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_08955 PF00478 IMP dehydrogenase / GMP reductase domain C3F36_08955 PF00571 CBS domain C3F36_08965 PF01037 Lrp/AsnC ligand binding domain C3F36_08970 PF03590 Aspartate-ammonia ligase C3F36_08980 PF10431 C-terminal, D2-small domain, of ClpB protein C3F36_08980 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_08980 PF17871 AAA lid domain C3F36_08980 PF07724 AAA domain (Cdc48 subfamily) C3F36_08980 PF02861 Clp amino terminal domain, pathogenicity island component C3F36_08990 PF01479 S4 domain C3F36_08990 PF00849 RNA pseudouridylate synthase C3F36_08995 PF13525 Outer membrane lipoprotein C3F36_09000 PF03313 Serine dehydratase alpha chain C3F36_09005 PF13309 HTH domain C3F36_09005 PF08348 YheO-like PAS domain C3F36_09010 PF02233 NAD(P) transhydrogenase beta subunit C3F36_09015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3F36_09015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3F36_09015 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch C3F36_09020 PF00465 Iron-containing alcohol dehydrogenase C3F36_09025 PF06719 AraC-type transcriptional regulator N-terminus C3F36_09025 PF12833 Helix-turn-helix domain C3F36_09030 PF08212 Lipocalin-like domain C3F36_09040 PF02743 Cache domain C3F36_09040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_09040 PF00672 HAMP domain C3F36_09050 PF01609 Transposase DDE domain C3F36_09050 PF13006 Insertion element 4 transposase N-terminal C3F36_09070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F36_09070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F36_09075 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain C3F36_09075 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain C3F36_09080 PF02863 Arginine repressor, C-terminal domain C3F36_09080 PF01316 Arginine repressor, DNA binding domain C3F36_09085 PF03606 C4-dicarboxylate anaerobic carrier C3F36_09090 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain C3F36_09090 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain C3F36_09095 PF00696 Amino acid kinase family C3F36_09110 PF02743 Cache domain C3F36_09110 PF00672 HAMP domain C3F36_09110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_09115 PF02653 Branched-chain amino acid transport system / permease component C3F36_09120 PF00005 ABC transporter C3F36_09125 PF13407 Periplasmic binding protein domain C3F36_09130 PF16353 Domain of unknown function(DUF4981) C3F36_09130 PF00703 Glycosyl hydrolases family 2 C3F36_09130 PF02929 Beta galactosidase small chain C3F36_09130 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C3F36_09130 PF02837 Glycosyl hydrolases family 2, sugar binding domain C3F36_09135 PF00356 Bacterial regulatory proteins, lacI family C3F36_09140 PF16363 GDP-mannose 4,6 dehydratase C3F36_09145 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain C3F36_09145 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain C3F36_09150 PF00288 GHMP kinases N terminal domain C3F36_09150 PF08544 GHMP kinases C terminal C3F36_09150 PF10509 Galactokinase galactose-binding signature C3F36_09155 PF01263 Aldose 1-epimerase C3F36_09160 PF00248 Aldo/keto reductase family C3F36_09165 PF02673 Bacitracin resistance protein BacA C3F36_09170 PF12973 ChrR Cupin-like domain C3F36_09175 PF04542 Sigma-70 region 2 C3F36_09175 PF04545 Sigma-70, region 4 C3F36_09185 PF00750 tRNA synthetases class I (R) C3F36_09185 PF03485 Arginyl tRNA synthetase N terminal domain C3F36_09185 PF05746 DALR anticodon binding domain C3F36_09195 PF00227 Proteasome subunit C3F36_09200 PF10431 C-terminal, D2-small domain, of ClpB protein C3F36_09200 PF07724 AAA domain (Cdc48 subfamily) C3F36_09200 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_09205 PF07690 Major Facilitator Superfamily C3F36_09220 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_09225 PF00005 ABC transporter C3F36_09240 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F36_09240 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_09240 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F36_09240 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F36_09240 PF04324 BFD-like [2Fe-2S] binding domain C3F36_09245 PF13806 Rieske-like [2Fe-2S] domain C3F36_09250 PF01226 Formate/nitrite transporter C3F36_09255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F36_09255 PF14824 Sirohaem biosynthesis protein central C3F36_09255 PF10414 Sirohaem synthase dimerisation region C3F36_09260 PF03448 MgtE intracellular N domain C3F36_09260 PF01769 Divalent cation transporter C3F36_09260 PF00571 CBS domain C3F36_09265 PF03737 Aldolase/RraA C3F36_09270 PF02592 Putative vitamin uptake transporter C3F36_09280 PF02696 Uncharacterized ACR, YdiU/UPF0061 family C3F36_09285 PF00034 Cytochrome c C3F36_09290 PF16124 RecQ zinc-binding C3F36_09290 PF00271 Helicase conserved C-terminal domain C3F36_09290 PF00270 DEAD/DEAH box helicase C3F36_09290 PF09382 RQC domain C3F36_09290 PF00570 HRDC domain C3F36_09295 PF03061 Thioesterase superfamily C3F36_09310 PF03475 3-alpha domain C3F36_09310 PF03473 MOSC domain C3F36_09315 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_09320 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_09325 PF00005 ABC transporter C3F36_09325 PF08402 TOBE domain C3F36_09330 PF13416 Bacterial extracellular solute-binding protein C3F36_09335 PF13416 Bacterial extracellular solute-binding protein C3F36_09345 PF00120 Glutamine synthetase, catalytic domain C3F36_09350 PF01258 Prokaryotic dksA/traR C4-type zinc finger C3F36_09365 PF05981 CreA protein C3F36_09370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F36_09370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F36_09375 PF00012 Hsp70 protein C3F36_09390 PF02903 Alpha amylase, N-terminal ig-like domain C3F36_09390 PF00128 Alpha amylase, catalytic domain C3F36_09410 PF13737 Transposase DDE domain C3F36_09420 PF16254 Domain of unknown function (DUF4910) C3F36_09420 PF09940 Domain of unknown function (DUF2172) C3F36_09420 PF16221 winged helix-turn-helix C3F36_09455 PF05958 tRNA (Uracil-5-)-methyltransferase C3F36_09460 PF00072 Response regulator receiver domain C3F36_09460 PF00486 Transcriptional regulatory protein, C terminal C3F36_09470 PF00512 His Kinase A (phospho-acceptor) domain C3F36_09470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_09470 PF00672 HAMP domain C3F36_09480 PF03949 Malic enzyme, NAD binding domain C3F36_09480 PF00390 Malic enzyme, N-terminal domain C3F36_09485 PF11066 Protein of unknown function (DUF2867) C3F36_09485 PF13460 NAD(P)H-binding C3F36_09490 PF01197 Ribosomal protein L31 C3F36_09495 PF18074 Primosomal protein N C-terminal domain C3F36_09495 PF00270 DEAD/DEAH box helicase C3F36_09495 PF17764 3′ DNA-binding domain (3′BD) C3F36_09495 PF00271 Helicase conserved C-terminal domain C3F36_09495 PF18319 PriA DNA helicase Cys-rich region (CRR) domain C3F36_09500 PF00440 Bacterial regulatory proteins, tetR family C3F36_09510 PF01389 OmpA-like transmembrane domain C3F36_09510 PF00691 OmpA family C3F36_09515 PF00585 C-terminal regulatory domain of Threonine dehydratase C3F36_09515 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_09520 PF00920 Dehydratase family C3F36_09525 PF01063 Amino-transferase class IV C3F36_09535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F36_09535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F36_09535 PF00205 Thiamine pyrophosphate enzyme, central domain C3F36_09545 PF13335 Magnesium chelatase, subunit ChlI C-terminal C3F36_09545 PF01078 Magnesium chelatase, subunit ChlI C3F36_09550 PF01553 Acyltransferase C3F36_09555 PF01553 Acyltransferase C3F36_09560 PF04463 Protein of unknown function (DUF523) C3F36_09575 PF00857 Isochorismatase family C3F36_09580 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain C3F36_09580 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family C3F36_09590 PF00005 ABC transporter C3F36_09595 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_09600 PF01323 DSBA-like thioredoxin domain C3F36_09605 PF01636 Phosphotransferase enzyme family C3F36_09610 PF13746 4Fe-4S dicluster domain C3F36_09610 PF12801 4Fe-4S binding domain C3F36_09610 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase C3F36_09615 PF06288 Protein of unknown function (DUF1040) C3F36_09620 PF01590 GAF domain C3F36_09620 PF00990 Diguanylate cyclase, GGDEF domain C3F36_09620 PF00360 Phytochrome region C3F36_09620 PF00563 EAL domain C3F36_09625 PF09278 MerR, DNA binding C3F36_09625 PF00376 MerR family regulatory protein C3F36_09630 PF00403 Heavy-metal-associated domain C3F36_09635 PF00156 Phosphoribosyl transferase domain C3F36_09640 PF01138 3' exoribonuclease family, domain 1 C3F36_09640 PF03725 3' exoribonuclease family, domain 2 C3F36_09645 PF08340 Domain of unknown function (DUF1732) C3F36_09645 PF03755 YicC-like family, N-terminal region C3F36_09655 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) C3F36_09660 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3F36_09665 PF00535 Glycosyl transferase family 2 C3F36_09670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3F36_09675 PF01467 Cytidylyltransferase-like C3F36_09680 PF04393 Protein of unknown function (DUF535) C3F36_09685 PF06827 Zinc finger found in FPG and IleRS C3F36_09685 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain C3F36_09685 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain C3F36_09695 PF00471 Ribosomal protein L33 C3F36_09700 PF00830 Ribosomal L28 family C3F36_09705 PF04002 RadC-like JAB domain C3F36_09710 PF02441 Flavoprotein C3F36_09710 PF04127 DNA / pantothenate metabolism flavoprotein C3F36_09715 PF00692 dUTPase C3F36_09720 PF00440 Bacterial regulatory proteins, tetR family C3F36_09725 PF00924 Mechanosensitive ion channel C3F36_09725 PF05552 Conserved TM helix C3F36_09735 PF00342 Phosphoglucose isomerase C3F36_09740 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain C3F36_09740 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain C3F36_09745 PF03466 LysR substrate binding domain C3F36_09745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_09755 PF13607 Succinyl-CoA ligase like flavodoxin domain C3F36_09755 PF13380 CoA binding domain C3F36_09755 PF00583 Acetyltransferase (GNAT) family C3F36_09780 PF12724 Flavodoxin domain C3F36_09790 PF01205 Uncharacterized protein family UPF0029 C3F36_09790 PF09186 Domain of unknown function (DUF1949) C3F36_09795 PF00557 Metallopeptidase family M24 C3F36_09800 PF00501 AMP-binding enzyme C3F36_09800 PF13193 AMP-binding enzyme C-terminal domain C3F36_09805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F36_09805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F36_09805 PF00378 Enoyl-CoA hydratase/isomerase C3F36_09810 PF02803 Thiolase, C-terminal domain C3F36_09810 PF00108 Thiolase, N-terminal domain C3F36_09815 PF00072 Response regulator receiver domain C3F36_09815 PF00486 Transcriptional regulatory protein, C terminal C3F36_09820 PF00672 HAMP domain C3F36_09820 PF00512 His Kinase A (phospho-acceptor) domain C3F36_09820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_09825 PF01547 Bacterial extracellular solute-binding protein C3F36_09835 PF01206 Sulfurtransferase TusA C3F36_09840 PF01042 Endoribonuclease L-PSP C3F36_09860 PF00691 OmpA family C3F36_09860 PF13488 Glycine zipper C3F36_09870 PF00857 Isochorismatase family C3F36_09875 PF03352 Methyladenine glycosylase C3F36_09880 PF02091 Glycyl-tRNA synthetase alpha subunit C3F36_09885 PF02092 Glycyl-tRNA synthetase beta subunit C3F36_09885 PF05746 DALR anticodon binding domain C3F36_09910 PF00665 Integrase core domain C3F36_09915 PF01695 IstB-like ATP binding protein C3F36_09925 PF01695 IstB-like ATP binding protein C3F36_09950 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term C3F36_09950 PF12833 Helix-turn-helix domain C3F36_09980 PF01810 LysE type translocator C3F36_09985 PF07690 Major Facilitator Superfamily C3F36_09995 PF00210 Ferritin-like domain C3F36_10000 PF00990 Diguanylate cyclase, GGDEF domain C3F36_10000 PF05230 MASE2 domain C3F36_10005 PF07055 Enoyl reductase FAD binding domain C3F36_10005 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase C3F36_10005 PF12241 Trans-2-enoyl-CoA reductase catalytic region C3F36_10015 PF00582 Universal stress protein family C3F36_10020 PF00579 tRNA synthetases class I (W and Y) C3F36_10025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_10025 PF03466 LysR substrate binding domain C3F36_10045 PF00892 EamA-like transporter family C3F36_10060 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3F36_10070 PF00625 Guanylate kinase C3F36_10075 PF01192 RNA polymerase Rpb6 C3F36_10080 PF02824 TGS domain C3F36_10080 PF13291 ACT domain C3F36_10080 PF04607 Region found in RelA / SpoT proteins C3F36_10085 PF12105 SpoU, rRNA methylase, C-terminal C3F36_10085 PF00588 SpoU rRNA Methylase family C3F36_10090 PF12146 Serine aminopeptidase, S33 C3F36_10130 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_10135 PF00873 AcrB/AcrD/AcrF family C3F36_10140 PF00512 His Kinase A (phospho-acceptor) domain C3F36_10140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_10140 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_10145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F36_10145 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_10155 PF03814 Potassium-transporting ATPase A subunit C3F36_10165 PF02669 K+-transporting ATPase, c chain C3F36_10170 PF13492 GAF domain C3F36_10170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_10170 PF00512 His Kinase A (phospho-acceptor) domain C3F36_10170 PF02702 Osmosensitive K+ channel His kinase sensor domain C3F36_10170 PF13493 Domain of unknown function (DUF4118) C3F36_10175 PF00486 Transcriptional regulatory protein, C terminal C3F36_10175 PF00072 Response regulator receiver domain C3F36_10180 PF07690 Major Facilitator Superfamily C3F36_10195 PF00155 Aminotransferase class I and II C3F36_10200 PF00011 Hsp20/alpha crystallin family C3F36_10205 PF00011 Hsp20/alpha crystallin family C3F36_10210 PF13280 WYL domain C3F36_10210 PF08279 HTH domain C3F36_10220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_10220 PF00204 DNA gyrase B C3F36_10220 PF18053 DNA gyrase B subunit insert domain C3F36_10220 PF00986 DNA gyrase B subunit, carboxyl terminus C3F36_10220 PF01751 Toprim domain C3F36_10225 PF02463 RecF/RecN/SMC N terminal domain C3F36_10230 PF02768 DNA polymerase III beta subunit, C-terminal domain C3F36_10230 PF00712 DNA polymerase III beta subunit, N-terminal domain C3F36_10230 PF02767 DNA polymerase III beta subunit, central domain C3F36_10235 PF00308 Bacterial dnaA protein C3F36_10235 PF08299 Bacterial dnaA protein helix-turn-helix C3F36_10235 PF11638 DnaA N-terminal domain C3F36_10240 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_10245 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_10255 PF00468 Ribosomal protein L34 C3F36_10260 PF00825 Ribonuclease P C3F36_10265 PF01809 Putative membrane protein insertion efficiency factor C3F36_10270 PF14849 YidC periplasmic domain C3F36_10270 PF02096 60Kd inner membrane protein C3F36_10275 PF12631 MnmE helical domain C3F36_10275 PF10396 GTP-binding protein TrmE N-terminus C3F36_10275 PF01926 50S ribosome-binding GTPase C3F36_10280 PF01032 FecCD transport family C3F36_10285 PF01497 Periplasmic binding protein C3F36_10290 PF00005 ABC transporter C3F36_10295 PF00005 ABC transporter C3F36_10300 PF00593 TonB dependent receptor C3F36_10300 PF07715 TonB-dependent Receptor Plug Domain C3F36_10305 PF00258 Flavodoxin C3F36_10310 PF01134 Glucose inhibited division protein A C3F36_10310 PF13932 GidA associated domain C3F36_10315 PF02527 rRNA small subunit methyltransferase G C3F36_10320 PF13614 AAA domain C3F36_10325 PF17762 HTH domain found in ParB protein C3F36_10325 PF02195 ParB-like nuclease domain C3F36_10335 PF00119 ATP synthase A chain C3F36_10340 PF00137 ATP synthase subunit C C3F36_10345 PF00430 ATP synthase B/B' CF(0) C3F36_10350 PF00213 ATP synthase delta (OSCP) subunit C3F36_10355 PF00306 ATP synthase alpha/beta chain, C terminal domain C3F36_10355 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F36_10355 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F36_10360 PF00231 ATP synthase C3F36_10365 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F36_10365 PF02874 ATP synthase alpha/beta family, beta-barrel domain C3F36_10370 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain C3F36_10370 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain C3F36_10375 PF14602 Hexapeptide repeat of succinyl-transferase C3F36_10375 PF12804 MobA-like NTP transferase domain C3F36_10375 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_10380 PF06123 Inner membrane protein CreD C3F36_10385 PF00905 Penicillin binding protein transpeptidase domain C3F36_10390 PF00512 His Kinase A (phospho-acceptor) domain C3F36_10390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_10390 PF00672 HAMP domain C3F36_10395 PF00072 Response regulator receiver domain C3F36_10395 PF00486 Transcriptional regulatory protein, C terminal C3F36_10400 PF00455 DeoR C terminal sensor domain C3F36_10400 PF08220 DeoR-like helix-turn-helix domain C3F36_10405 PF01380 SIS domain C3F36_10410 PF00196 Bacterial regulatory proteins, luxR family C3F36_10410 PF03472 Autoinducer binding domain C3F36_10420 PF01618 MotA/TolQ/ExbB proton channel family C3F36_10425 PF01618 MotA/TolQ/ExbB proton channel family C3F36_10430 PF02472 Biopolymer transport protein ExbD/TolR C3F36_10435 PF03544 Gram-negative bacterial TonB protein C-terminal C3F36_10480 PF02537 CrcB-like protein, Camphor Resistance (CrcB) C3F36_10485 PF01209 ubiE/COQ5 methyltransferase family C3F36_10490 PF02036 SCP-2 sterol transfer family C3F36_10495 PF03109 ABC1 family C3F36_10500 PF02416 mttA/Hcf106 family C3F36_10505 PF02416 mttA/Hcf106 family C3F36_10510 PF00902 Sec-independent protein translocase protein (TatC) C3F36_10515 PF01026 TatD related DNase C3F36_10520 PF00490 Delta-aminolevulinic acid dehydratase C3F36_10525 PF01432 Peptidase family M3 C3F36_10530 PF03707 Bacterial signalling protein N terminal repeat C3F36_10530 PF00563 EAL domain C3F36_10530 PF00990 Diguanylate cyclase, GGDEF domain C3F36_10535 PF04445 Putative SAM-dependent methyltransferase C3F36_10550 PF02541 Ppx/GppA phosphatase family C3F36_10555 PF00270 DEAD/DEAH box helicase C3F36_10555 PF00271 Helicase conserved C-terminal domain C3F36_10560 PF00085 Thioredoxin C3F36_10565 PF07497 Rho termination factor, RNA-binding domain C3F36_10565 PF07498 Rho termination factor, N-terminal domain C3F36_10565 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F36_10575 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase C3F36_10580 PF00175 Oxidoreductase NAD-binding domain C3F36_10585 PF04380 Membrane fusogenic activity C3F36_10595 PF12262 Bacterial virulence factor lipase N-terminal C3F36_10600 PF01694 Rhomboid family C3F36_10600 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease C3F36_10605 PF00581 Rhodanese-like domain C3F36_10610 PF01810 LysE type translocator C3F36_10620 PF00005 ABC transporter C3F36_10625 PF12399 Branched-chain amino acid ATP-binding cassette transporter C3F36_10625 PF00005 ABC transporter C3F36_10630 PF11862 Domain of unknown function (DUF3382) C3F36_10630 PF02653 Branched-chain amino acid transport system / permease component C3F36_10635 PF02653 Branched-chain amino acid transport system / permease component C3F36_10640 PF13458 Periplasmic binding protein C3F36_10645 PF00356 Bacterial regulatory proteins, lacI family C3F36_10650 PF01590 GAF domain C3F36_10650 PF00158 Sigma-54 interaction domain C3F36_10655 PF00258 Flavodoxin C3F36_10655 PF00753 Metallo-beta-lactamase superfamily C3F36_10655 PF00301 Rubredoxin C3F36_10660 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_10660 PF18113 Rubredoxin binding C-terminal domain C3F36_10670 PF12801 4Fe-4S binding domain C3F36_10690 PF03222 Tryptophan/tyrosine permease family C3F36_10695 PF03222 Tryptophan/tyrosine permease family C3F36_10715 PF00990 Diguanylate cyclase, GGDEF domain C3F36_10715 PF01590 GAF domain C3F36_10715 PF00563 EAL domain C3F36_10715 PF00360 Phytochrome region C3F36_10735 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain C3F36_10735 PF02222 ATP-grasp domain C3F36_10740 PF00731 AIR carboxylase C3F36_10745 PF07715 TonB-dependent Receptor Plug Domain C3F36_10745 PF00593 TonB dependent receptor C3F36_10750 PF01177 Asp/Glu/Hydantoin racemase C3F36_10785 PF00899 ThiF family C3F36_10790 PF02657 Fe-S metabolism associated domain C3F36_10795 PF00266 Aminotransferase class-V C3F36_10800 PF00580 UvrD/REP helicase N-terminal domain C3F36_10800 PF13361 UvrD-like helicase C-terminal domain C3F36_10805 PF00563 EAL domain C3F36_10805 PF03707 Bacterial signalling protein N terminal repeat C3F36_10805 PF00990 Diguanylate cyclase, GGDEF domain C3F36_10810 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3F36_10815 PF00107 Zinc-binding dehydrogenase C3F36_10815 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_10820 PF00155 Aminotransferase class I and II C3F36_10825 PF08360 QacR-like protein, C-terminal region C3F36_10825 PF00440 Bacterial regulatory proteins, tetR family C3F36_10830 PF01370 NAD dependent epimerase/dehydratase family C3F36_10845 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) C3F36_10850 PF01075 Glycosyltransferase family 9 (heptosyltransferase) C3F36_10860 PF03611 PTS system sugar-specific permease component C3F36_10870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F36_10875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C3F36_10875 PF00356 Bacterial regulatory proteins, lacI family C3F36_10895 PF03748 Flagellar basal body-associated protein FliL C3F36_10900 PF04345 Chorismate lyase C3F36_10905 PF01040 UbiA prenyltransferase family C3F36_10910 PF01553 Acyltransferase C3F36_10915 PF00717 Peptidase S24-like C3F36_10915 PF01726 LexA DNA binding domain C3F36_10925 PF02630 SCO1/SenC C3F36_10930 PF01554 MatE C3F36_10935 PF00588 SpoU rRNA Methylase family C3F36_10940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_10940 PF00672 HAMP domain C3F36_10940 PF16527 Two-component sensor protein CpxA, periplasmic domain C3F36_10940 PF00512 His Kinase A (phospho-acceptor) domain C3F36_10945 PF00072 Response regulator receiver domain C3F36_10945 PF00486 Transcriptional regulatory protein, C terminal C3F36_10950 PF01545 Cation efflux family C3F36_10950 PF16916 Dimerisation domain of Zinc Transporter C3F36_10955 PF06426 Serine acetyltransferase, N-terminal C3F36_10955 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_10965 PF06005 Cell division protein ZapB C3F36_10975 PF01367 5'-3' exonuclease, C-terminal SAM fold C3F36_10975 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3F36_10975 PF01612 3'-5' exonuclease C3F36_10975 PF00476 DNA polymerase family A C3F36_10980 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_11015 PF00356 Bacterial regulatory proteins, lacI family C3F36_11020 PF02837 Glycosyl hydrolases family 2, sugar binding domain C3F36_11020 PF02929 Beta galactosidase small chain C3F36_11020 PF16353 Domain of unknown function(DUF4981) C3F36_11020 PF02836 Glycosyl hydrolases family 2, TIM barrel domain C3F36_11020 PF00703 Glycosyl hydrolases family 2 C3F36_11025 PF04074 YhcH/YjgK/YiaL C3F36_11030 PF13520 Amino acid permease C3F36_11035 PF01588 Putative tRNA binding domain C3F36_11040 PF13520 Amino acid permease C3F36_11045 PF13593 SBF-like CPA transporter family (DUF4137) C3F36_11050 PF12867 DinB superfamily C3F36_11050 PF03781 Sulfatase-modifying factor enzyme 1 C3F36_11065 PF00756 Putative esterase C3F36_11070 PF00107 Zinc-binding dehydrogenase C3F36_11070 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_11075 PF03466 LysR substrate binding domain C3F36_11075 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11080 PF13737 Transposase DDE domain C3F36_11125 PF13361 UvrD-like helicase C-terminal domain C3F36_11125 PF00580 UvrD/REP helicase N-terminal domain C3F36_11140 PF01609 Transposase DDE domain C3F36_11150 PF01609 Transposase DDE domain C3F36_11160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11160 PF03466 LysR substrate binding domain C3F36_11175 PF14001 YdfZ protein C3F36_11195 PF06206 CpeT/CpcT family (DUF1001) C3F36_11200 PF01810 LysE type translocator C3F36_11205 PF12833 Helix-turn-helix domain C3F36_11210 PF00892 EamA-like transporter family C3F36_11215 PF00171 Aldehyde dehydrogenase family C3F36_11220 PF01381 Helix-turn-helix C3F36_11220 PF07883 Cupin domain C3F36_11225 PF00202 Aminotransferase class-III C3F36_11230 PF00171 Aldehyde dehydrogenase family C3F36_11235 PF02540 NAD synthase C3F36_11235 PF00117 Glutamine amidotransferase class-I C3F36_11235 PF00958 GMP synthase C terminal domain C3F36_11240 PF03466 LysR substrate binding domain C3F36_11240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11245 PF00294 pfkB family carbohydrate kinase C3F36_11250 PF02082 Transcriptional regulator C3F36_11265 PF02646 RmuC family C3F36_11270 PF02386 Cation transport protein C3F36_11275 PF02254 TrkA-N domain C3F36_11275 PF02080 TrkA-C domain C3F36_11280 PF01029 NusB family C3F36_11280 PF01189 16S rRNA methyltransferase RsmB/F C3F36_11285 PF00551 Formyl transferase C3F36_11285 PF02911 Formyl transferase, C-terminal domain C3F36_11290 PF01327 Polypeptide deformylase C3F36_11300 PF17782 DprA winged helix domain C3F36_11300 PF02481 DNA recombination-mediator protein A C3F36_11305 PF04361 Protein of unknown function (DUF494) C3F36_11310 PF01396 Topoisomerase DNA binding C4 zinc finger C3F36_11315 PF01300 Telomere recombination C3F36_11320 PF01218 Coproporphyrinogen III oxidase C3F36_11325 PF08501 Shikimate dehydrogenase substrate binding domain C3F36_11325 PF01488 Shikimate / quinate 5-dehydrogenase C3F36_11325 PF18317 Shikimate 5'-dehydrogenase C-terminal domain C3F36_11335 PF01926 50S ribosome-binding GTPase C3F36_11340 PF00034 Cytochrome c C3F36_11345 PF04220 Der GTPase activator (YihI) C3F36_11350 PF10675 Protein of unknown function (DUF2489) C3F36_11355 PF06969 HemN C-terminal domain C3F36_11355 PF04055 Radical SAM superfamily C3F36_11360 PF00962 Adenosine/AMP deaminase C3F36_11365 PF00072 Response regulator receiver domain C3F36_11365 PF00158 Sigma-54 interaction domain C3F36_11365 PF02954 Bacterial regulatory protein, Fis family C3F36_11370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_11370 PF00989 PAS fold C3F36_11370 PF00512 His Kinase A (phospho-acceptor) domain C3F36_11380 PF00120 Glutamine synthetase, catalytic domain C3F36_11380 PF03951 Glutamine synthetase, beta-Grasp domain C3F36_11390 PF03631 Virulence factor BrkB C3F36_11395 PF02580 D-Tyr-tRNA(Tyr) deacylase C3F36_11405 PF09500 Putative thioesterase (yiiD_Cterm) C3F36_11405 PF00583 Acetyltransferase (GNAT) family C3F36_11415 PF17191 RecG wedge domain C3F36_11415 PF00271 Helicase conserved C-terminal domain C3F36_11415 PF00270 DEAD/DEAH box helicase C3F36_11420 PF13091 PLD-like domain C3F36_11425 PF02447 GntP family permease C3F36_11430 PF01202 Shikimate kinase C3F36_11435 PF00920 Dehydratase family C3F36_11440 PF01081 KDPG and KHG aldolase C3F36_11455 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C3F36_11455 PF00356 Bacterial regulatory proteins, lacI family C3F36_11465 PF01551 Peptidase family M23 C3F36_11470 PF06415 BPG-independent PGAM N-terminus (iPGM_N) C3F36_11470 PF01676 Metalloenzyme superfamily C3F36_11475 PF00581 Rhodanese-like domain C3F36_11480 PF02556 Preprotein translocase subunit SecB C3F36_11485 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus C3F36_11485 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus C3F36_11490 PF01521 Iron-sulphur cluster biosynthesis C3F36_11490 PF01106 NifU-like domain C3F36_11495 PF00156 Phosphoribosyl transferase domain C3F36_11500 PF00561 alpha/beta hydrolase fold C3F36_11515 PF16921 Tex protein YqgF-like domain C3F36_11515 PF17674 HHH domain C3F36_11515 PF00575 S1 RNA binding domain C3F36_11515 PF09371 Tex-like protein N-terminal domain C3F36_11520 PF03449 Transcription elongation factor, N-terminal C3F36_11520 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F36_11525 PF00486 Transcriptional regulatory protein, C terminal C3F36_11525 PF00072 Response regulator receiver domain C3F36_11530 PF00512 His Kinase A (phospho-acceptor) domain C3F36_11530 PF00672 HAMP domain C3F36_11530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_11540 PF00338 Ribosomal protein S10p/S20e C3F36_11545 PF00297 Ribosomal protein L3 C3F36_11550 PF00573 Ribosomal protein L4/L1 family C3F36_11555 PF00276 Ribosomal protein L23 C3F36_11560 PF03947 Ribosomal Proteins L2, C-terminal domain C3F36_11560 PF00181 Ribosomal Proteins L2, RNA binding domain C3F36_11565 PF00203 Ribosomal protein S19 C3F36_11570 PF00237 Ribosomal protein L22p/L17e C3F36_11575 PF07650 KH domain C3F36_11575 PF00189 Ribosomal protein S3, C-terminal domain C3F36_11580 PF00252 Ribosomal protein L16p/L10e C3F36_11585 PF00831 Ribosomal L29 protein C3F36_11590 PF00366 Ribosomal protein S17 C3F36_11595 PF00238 Ribosomal protein L14p/L23e C3F36_11600 PF00467 KOW motif C3F36_11600 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 C3F36_11605 PF00281 Ribosomal protein L5 C3F36_11605 PF00673 ribosomal L5P family C-terminus C3F36_11610 PF00253 Ribosomal protein S14p/S29e C3F36_11615 PF00410 Ribosomal protein S8 C3F36_11620 PF00347 Ribosomal protein L6 C3F36_11625 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast C3F36_11630 PF00333 Ribosomal protein S5, N-terminal domain C3F36_11630 PF03719 Ribosomal protein S5, C-terminal domain C3F36_11635 PF00327 Ribosomal protein L30p/L7e C3F36_11640 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A C3F36_11645 PF00344 SecY translocase C3F36_11650 PF00444 Ribosomal protein L36 C3F36_11655 PF00416 Ribosomal protein S13/S18 C3F36_11660 PF00411 Ribosomal protein S11 C3F36_11665 PF01479 S4 domain C3F36_11665 PF00163 Ribosomal protein S4/S9 N-terminal domain C3F36_11670 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain C3F36_11670 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain C3F36_11670 PF01000 RNA polymerase Rpb3/RpoA insert domain C3F36_11675 PF01196 Ribosomal protein L17 C3F36_11720 PF00665 Integrase core domain C3F36_11725 PF01695 IstB-like ATP binding protein C3F36_11740 PF00665 Integrase core domain C3F36_11745 PF01695 IstB-like ATP binding protein C3F36_11765 PF02254 TrkA-N domain C3F36_11765 PF00999 Sodium/hydrogen exchanger family C3F36_11770 PF02525 Flavodoxin-like fold C3F36_11775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11775 PF03466 LysR substrate binding domain C3F36_11780 PF00106 short chain dehydrogenase C3F36_11795 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C3F36_11795 PF00326 Prolyl oligopeptidase family C3F36_11800 PF16868 NMT1-like family C3F36_11815 PF07947 YhhN family C3F36_11820 PF07690 Major Facilitator Superfamily C3F36_11825 PF13533 Biotin-lipoyl like C3F36_11830 PF03466 LysR substrate binding domain C3F36_11830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11840 PF00375 Sodium:dicarboxylate symporter family C3F36_11845 PF10678 Protein of unknown function (DUF2492) C3F36_11850 PF01914 MarC family integral membrane protein C3F36_11855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_11855 PF03466 LysR substrate binding domain C3F36_11860 PF02416 mttA/Hcf106 family C3F36_11870 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_11870 PF01464 Transglycosylase SLT domain C3F36_11875 PF13091 PLD-like domain C3F36_11885 PF00440 Bacterial regulatory proteins, tetR family C3F36_11890 PF07226 Protein of unknown function (DUF1422) C3F36_11905 PF00448 SRP54-type protein, GTPase domain C3F36_11905 PF02881 SRP54-type protein, helical bundle domain C3F36_11910 PF00005 ABC transporter C3F36_11915 PF18075 FtsX extracellular domain C3F36_11920 PF00140 Sigma-70 factor, region 1.2 C3F36_11920 PF04545 Sigma-70, region 4 C3F36_11920 PF04542 Sigma-70 region 2 C3F36_11925 PF00484 Carbonic anhydrase C3F36_11930 PF00392 Bacterial regulatory proteins, gntR family C3F36_11930 PF07702 UTRA domain C3F36_11935 PF01979 Amidohydrolase family C3F36_11940 PF00491 Arginase family C3F36_11945 PF17392 Urocanase C-terminal domain C3F36_11945 PF01175 Urocanase Rossmann-like domain C3F36_11945 PF17391 Urocanase N-terminal domain C3F36_11950 PF00221 Aromatic amino acid lyase C3F36_11955 PF01699 Sodium/calcium exchanger protein C3F36_11960 PF12792 CSS motif domain associated with EAL C3F36_11960 PF00563 EAL domain C3F36_11995 PF03958 Bacterial type II/III secretion system short domain C3F36_11995 PF00263 Bacterial type II and III secretion system protein C3F36_12000 PF01471 Putative peptidoglycan binding domain C3F36_12000 PF13401 AAA domain C3F36_12010 PF00437 Type II/IV secretion system protein C3F36_12015 PF00482 Type II secretion system (T2SS), protein F C3F36_12030 PF00114 Pilin (bacterial filament) C3F36_12030 PF07963 Prokaryotic N-terminal methylation motif C3F36_12035 PF07963 Prokaryotic N-terminal methylation motif C3F36_12035 PF00114 Pilin (bacterial filament) C3F36_12065 PF04085 rod shape-determining protein MreC C3F36_12070 PF04093 rod shape-determining protein MreD C3F36_12075 PF02545 Maf-like protein C3F36_12080 PF10150 Ribonuclease E/G family C3F36_12080 PF00575 S1 RNA binding domain C3F36_12085 PF13116 Protein of unknown function C3F36_12085 PF13502 AsmA-like C-terminal region C3F36_12090 PF00795 Carbon-nitrogen hydrolase C3F36_12095 PF01523 Putative modulator of DNA gyrase C3F36_12105 PF01914 MarC family integral membrane protein C3F36_12110 PF07690 Major Facilitator Superfamily C3F36_12120 PF04228 Putative neutral zinc metallopeptidase C3F36_12140 PF00999 Sodium/hydrogen exchanger family C3F36_12145 PF02574 Homocysteine S-methyltransferase C3F36_12145 PF02310 B12 binding domain C3F36_12145 PF00809 Pterin binding enzyme C3F36_12145 PF02607 B12 binding domain C3F36_12145 PF02965 Vitamin B12 dependent methionine synthase, activation domain C3F36_12155 PF18030 RimK PreATP-grasp domain C3F36_12155 PF08443 RimK-like ATP-grasp domain C3F36_12165 PF00486 Transcriptional regulatory protein, C terminal C3F36_12165 PF00072 Response regulator receiver domain C3F36_12180 PF01964 Radical SAM ThiC family C3F36_12180 PF13667 ThiC-associated domain C3F36_12185 PF02581 Thiamine monophosphate synthase C3F36_12190 PF00899 ThiF family C3F36_12200 PF05690 Thiazole biosynthesis protein ThiG C3F36_12205 PF06968 Biotin and Thiamin Synthesis associated domain C3F36_12205 PF04055 Radical SAM superfamily C3F36_12240 PF13036 Peptidoglycan-synthase activator LpoB C3F36_12245 PF00990 Diguanylate cyclase, GGDEF domain C3F36_12250 PF06055 Exopolysaccharide synthesis, ExoD C3F36_12260 PF08803 Putative mono-oxygenase ydhR C3F36_12265 PF01638 HxlR-like helix-turn-helix C3F36_12270 PF01757 Acyltransferase family C3F36_12270 PF00842 Alanine racemase, C-terminal domain C3F36_12270 PF01168 Alanine racemase, N-terminal domain C3F36_12290 PF08241 Methyltransferase domain C3F36_12300 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded C3F36_12305 PF13006 Insertion element 4 transposase N-terminal C3F36_12305 PF01609 Transposase DDE domain C3F36_12310 PF03692 Putative zinc- or iron-chelating domain C3F36_12315 PF07719 Tetratricopeptide repeat C3F36_12315 PF07219 HemY protein N-terminus C3F36_12320 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase C3F36_12325 PF02602 Uroporphyrinogen-III synthase HemD C3F36_12330 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain C3F36_12330 PF03900 Porphobilinogen deaminase, C-terminal domain C3F36_12335 PF01295 Adenylate cyclase, class-I C3F36_12335 PF12633 Adenylate cyclase NT domain C3F36_12340 PF02230 Phospholipase/Carboxylesterase C3F36_12345 PF01491 Frataxin-like domain C3F36_12355 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F36_12355 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain C3F36_12360 PF01678 Diaminopimelate epimerase C3F36_12370 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_12370 PF00589 Phage integrase family C3F36_12375 PF13419 Haloacid dehalogenase-like hydrolase C3F36_12385 PF07722 Peptidase C26 C3F36_12410 PF00994 Probable molybdopterin binding domain C3F36_12410 PF02464 Competence-damaged protein C3F36_12420 PF04204 Homoserine O-succinyltransferase C3F36_12430 PF01037 Lrp/AsnC ligand binding domain C3F36_12435 PF00884 Sulfatase C3F36_12445 PF16657 Maltogenic Amylase, C-terminal domain C3F36_12445 PF00128 Alpha amylase, catalytic domain C3F36_12445 PF02903 Alpha amylase, N-terminal ig-like domain C3F36_12450 PF02308 MgtC family C3F36_12470 PF00106 short chain dehydrogenase C3F36_12485 PF00465 Iron-containing alcohol dehydrogenase C3F36_12495 PF01053 Cys/Met metabolism PLP-dependent enzyme C3F36_12505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_12505 PF12793 Sugar transport-related sRNA regulator N-term C3F36_12525 PF00561 alpha/beta hydrolase fold C3F36_12535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F36_12535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F36_12540 PF02698 DUF218 domain C3F36_12545 PF01752 Collagenase C3F36_12545 PF08453 Peptidase family M9 N-terminal C3F36_12550 PF00501 AMP-binding enzyme C3F36_12550 PF13193 AMP-binding enzyme C-terminal domain C3F36_12555 PF13378 Enolase C-terminal domain-like C3F36_12560 PF00378 Enoyl-CoA hydratase/isomerase C3F36_12565 PF12697 Alpha/beta hydrolase family C3F36_12570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F36_12570 PF16582 Middle domain of thiamine pyrophosphate C3F36_12570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain C3F36_12575 PF00425 chorismate binding enzyme C3F36_12580 PF01040 UbiA prenyltransferase family C3F36_12600 PF03880 DbpA RNA binding domain C3F36_12600 PF00270 DEAD/DEAH box helicase C3F36_12600 PF00271 Helicase conserved C-terminal domain C3F36_12605 PF01773 Na+ dependent nucleoside transporter N-terminus C3F36_12605 PF07662 Na+ dependent nucleoside transporter C-terminus C3F36_12605 PF07670 Nucleoside recognition C3F36_12620 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 C3F36_12625 PF01544 CorA-like Mg2+ transporter protein C3F36_12640 PF03471 Transporter associated domain C3F36_12640 PF02080 TrkA-C domain C3F36_12640 PF00999 Sodium/hydrogen exchanger family C3F36_12645 PF05068 Mannitol repressor C3F36_12650 PF08125 Mannitol dehydrogenase C-terminal domain C3F36_12650 PF01232 Mannitol dehydrogenase Rossmann domain C3F36_12655 PF02378 Phosphotransferase system, EIIC C3F36_12655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 C3F36_12655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit C3F36_12660 PF17876 Cold shock domain C3F36_12660 PF00773 RNB domain C3F36_12660 PF08206 Ribonuclease B OB domain C3F36_12665 PF03466 LysR substrate binding domain C3F36_12665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_12670 PF00765 Autoinducer synthase C3F36_12675 PF00196 Bacterial regulatory proteins, luxR family C3F36_12675 PF03472 Autoinducer binding domain C3F36_12680 PF01810 LysE type translocator C3F36_12685 PF00149 Calcineurin-like phosphoesterase C3F36_12685 PF02872 5'-nucleotidase, C-terminal domain C3F36_12690 PF03279 Bacterial lipid A biosynthesis acyltransferase C3F36_12695 PF01467 Cytidylyltransferase-like C3F36_12695 PF00294 pfkB family carbohydrate kinase C3F36_12700 PF02321 Outer membrane efflux protein C3F36_12705 PF00293 NUDIX domain C3F36_12710 PF06853 Protein of unknown function (DUF1249) C3F36_12715 PF00149 Calcineurin-like phosphoesterase C3F36_12720 PF05728 Uncharacterised protein family (UPF0227) C3F36_12725 PF00293 NUDIX domain C3F36_12735 PF07869 Protein of unknown function (DUF1656) C3F36_12740 PF00529 HlyD membrane-fusion protein of T1SS C3F36_12740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_12745 PF04632 Fusaric acid resistance protein family C3F36_12750 PF00204 DNA gyrase B C3F36_12750 PF00986 DNA gyrase B subunit, carboxyl terminus C3F36_12750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_12750 PF01751 Toprim domain C3F36_12755 PF03989 DNA gyrase C-terminal domain, beta-propeller C3F36_12755 PF00521 DNA gyrase/topoisomerase IV, subunit A C3F36_12795 PF01556 DnaJ C terminal domain C3F36_12795 PF00226 DnaJ domain C3F36_12795 PF00684 DnaJ central domain C3F36_12805 PF00578 AhpC/TSA family C3F36_12825 PF01553 Acyltransferase C3F36_12830 PF04012 PspA/IM30 family C3F36_12845 PF01541 GIY-YIG catalytic domain C3F36_12850 PF00892 EamA-like transporter family C3F36_12855 PF03167 Uracil DNA glycosylase superfamily C3F36_12865 PF03466 LysR substrate binding domain C3F36_12865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_12870 PF00950 ABC 3 transport family C3F36_12875 PF00005 ABC transporter C3F36_12880 PF01297 Zinc-uptake complex component A periplasmic C3F36_12900 PF01551 Peptidase family M23 C3F36_12900 PF01476 LysM domain C3F36_12900 PF08525 Opacity-associated protein A N-terminal motif C3F36_12905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F36_12910 PF04222 Protein of unknown function (DUF416) C3F36_12925 PF02028 BCCT, betaine/carnitine/choline family transporter C3F36_12930 PF05192 MutS domain III C3F36_12930 PF01624 MutS domain I C3F36_12930 PF05190 MutS family domain IV C3F36_12930 PF00488 MutS domain V C3F36_12930 PF05188 MutS domain II C3F36_12935 PF13356 Arm DNA-binding domain C3F36_12935 PF00589 Phage integrase family C3F36_12935 PF14659 Phage integrase, N-terminal SAM-like domain C3F36_12975 PF00990 Diguanylate cyclase, GGDEF domain C3F36_12975 PF05230 MASE2 domain C3F36_12985 PF08447 PAS fold C3F36_12985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_12990 PF00239 Resolvase, N terminal domain C3F36_12990 PF02796 Helix-turn-helix domain of resolvase C3F36_13000 PF18766 SWI2/SNF2 ATPase C3F36_13000 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C3F36_13000 PF11867 Domain of unknown function (DUF3387) C3F36_13015 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A C3F36_13065 PF04002 RadC-like JAB domain C3F36_13110 PF09588 YqaJ-like viral recombinase domain C3F36_13125 PF02464 Competence-damaged protein C3F36_13130 PF00154 recA bacterial DNA recombination protein C3F36_13135 PF02631 RecX family C3F36_13140 PF02272 DHHA1 domain C3F36_13140 PF01411 tRNA synthetases class II (A) C3F36_13140 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F36_13145 PF13840 ACT domain C3F36_13145 PF01842 ACT domain C3F36_13145 PF00696 Amino acid kinase family C3F36_13150 PF02599 Global regulator protein family C3F36_13185 PF00768 D-alanyl-D-alanine carboxypeptidase C3F36_13190 PF13006 Insertion element 4 transposase N-terminal C3F36_13190 PF01609 Transposase DDE domain C3F36_13195 PF09335 SNARE associated Golgi protein C3F36_13200 PF03471 Transporter associated domain C3F36_13200 PF01595 Cyclin M transmembrane N-terminal domain C3F36_13200 PF00571 CBS domain C3F36_13205 PF10458 Valyl tRNA synthetase tRNA binding arm C3F36_13205 PF00133 tRNA synthetases class I (I, L, M and V) C3F36_13205 PF08264 Anticodon-binding domain of tRNA C3F36_13210 PF04364 DNA polymerase III chi subunit, HolC C3F36_13215 PF02789 Cytosol aminopeptidase family, N-terminal domain C3F36_13215 PF00883 Cytosol aminopeptidase family, catalytic domain C3F36_13220 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F36_13225 PF03739 Lipopolysaccharide export system permease LptF/LptG C3F36_13250 PF00909 Ammonium Transporter Family C3F36_13255 PF05958 tRNA (Uracil-5-)-methyltransferase C3F36_13255 PF01938 TRAM domain C3F36_13270 PF01026 TatD related DNase C3F36_13275 PF01773 Na+ dependent nucleoside transporter N-terminus C3F36_13275 PF07662 Na+ dependent nucleoside transporter C-terminus C3F36_13275 PF07670 Nucleoside recognition C3F36_13285 PF01791 DeoC/LacD family aldolase C3F36_13290 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain C3F36_13290 PF00591 Glycosyl transferase family, a/b domain C3F36_13290 PF02885 Glycosyl transferase family, helical bundle domain C3F36_13295 PF01676 Metalloenzyme superfamily C3F36_13300 PF01048 Phosphorylase superfamily C3F36_13305 PF13426 PAS domain C3F36_13305 PF00990 Diguanylate cyclase, GGDEF domain C3F36_13305 PF08448 PAS fold C3F36_13305 PF08447 PAS fold C3F36_13305 PF00563 EAL domain C3F36_13305 PF05231 MASE1 C3F36_13315 PF18429 Domain of unknown function (DUF5609) C3F36_13330 PF18073 Rubredoxin metal binding domain C3F36_13335 PF07238 PilZ domain C3F36_13340 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ C3F36_13345 PF00216 Bacterial DNA-binding protein C3F36_13360 PF01207 Dihydrouridine synthase (Dus) C3F36_13370 PF05598 Transposase domain (DUF772) C3F36_13370 PF01609 Transposase DDE domain C3F36_13375 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3F36_13395 PF01475 Ferric uptake regulator family C3F36_13410 PF05525 Branched-chain amino acid transport protein C3F36_13415 PF05175 Methyltransferase small domain C3F36_13420 PF00270 DEAD/DEAH box helicase C3F36_13420 PF00271 Helicase conserved C-terminal domain C3F36_13425 PF03883 Peroxide stress protein YaaA C3F36_13430 PF00437 Type II/IV secretion system protein C3F36_13435 PF00437 Type II/IV secretion system protein C3F36_13440 PF01168 Alanine racemase, N-terminal domain C3F36_13445 PF03807 NADP oxidoreductase coenzyme F420-dependent C3F36_13445 PF14748 Pyrroline-5-carboxylate reductase dimerisation C3F36_13450 PF02325 YGGT family C3F36_13455 PF02594 Uncharacterised ACR, YggU family COG1872 C3F36_13475 PF06062 Uncharacterised protein family (UPF0231) C3F36_13480 PF17853 GGDEF-like domain C3F36_13480 PF13556 PucR C-terminal helix-turn-helix domain C3F36_13480 PF05651 Putative sugar diacid recognition C3F36_13485 PF02447 GntP family permease C3F36_13490 PF02595 Glycerate kinase family C3F36_13500 PF00255 Glutathione peroxidase C3F36_13505 PF03466 LysR substrate binding domain C3F36_13505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_13510 PF07662 Na+ dependent nucleoside transporter C-terminus C3F36_13510 PF07670 Nucleoside recognition C3F36_13510 PF01773 Na+ dependent nucleoside transporter N-terminus C3F36_13515 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain C3F36_13515 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain C3F36_13520 PF00472 RF-1 domain C3F36_13525 PF00543 Nitrogen regulatory protein P-II C3F36_13540 PF08402 TOBE domain C3F36_13540 PF00005 ABC transporter C3F36_13545 PF04261 Dyp-type peroxidase family C3F36_13550 PF01316 Arginine repressor, DNA binding domain C3F36_13550 PF02863 Arginine repressor, C-terminal domain C3F36_13555 PF00005 ABC transporter C3F36_13560 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_13565 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_13570 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_13575 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain C3F36_13575 PF00056 lactate/malate dehydrogenase, NAD binding domain C3F36_13585 PF08238 Sel1 repeat C3F36_13590 PF00175 Oxidoreductase NAD-binding domain C3F36_13590 PF00970 Oxidoreductase FAD-binding domain C3F36_13590 PF00042 Globin C3F36_13595 PF02082 Transcriptional regulator C3F36_13600 PF13006 Insertion element 4 transposase N-terminal C3F36_13600 PF01609 Transposase DDE domain C3F36_13605 PF03471 Transporter associated domain C3F36_13605 PF01595 Cyclin M transmembrane N-terminal domain C3F36_13605 PF00571 CBS domain C3F36_13610 PF01578 Cytochrome C assembly protein C3F36_13615 PF02881 SRP54-type protein, helical bundle domain C3F36_13615 PF00448 SRP54-type protein, GTPase domain C3F36_13615 PF02978 Signal peptide binding domain C3F36_13620 PF00886 Ribosomal protein S16 C3F36_13625 PF01782 RimM N-terminal domain C3F36_13625 PF05239 PRC-barrel domain C3F36_13630 PF01746 tRNA (Guanine-1)-methyltransferase C3F36_13635 PF01245 Ribosomal protein L19 C3F36_13645 PF02976 DNA mismatch repair enzyme MutH C3F36_13650 PF00293 NUDIX domain C3F36_13655 PF02896 PEP-utilising enzyme, TIM barrel domain C3F36_13655 PF01590 GAF domain C3F36_13655 PF05524 PEP-utilising enzyme, N-terminal C3F36_13655 PF00391 PEP-utilising enzyme, mobile domain C3F36_13660 PF01790 Prolipoprotein diacylglyceryl transferase C3F36_13665 PF00303 Thymidylate synthase C3F36_13670 PF06965 Na+/H+ antiporter 1 C3F36_13680 PF03466 LysR substrate binding domain C3F36_13680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_13685 PF01022 Bacterial regulatory protein, arsR family C3F36_13690 PF01649 Ribosomal protein S20 C3F36_13695 PF03023 Lipid II flippase MurJ C3F36_13700 PF06574 FAD synthetase C3F36_13700 PF01687 Riboflavin kinase C3F36_13705 PF06827 Zinc finger found in FPG and IleRS C3F36_13705 PF08264 Anticodon-binding domain of tRNA C3F36_13705 PF00133 tRNA synthetases class I (I, L, M and V) C3F36_13710 PF01252 Signal peptidase (SPase) II C3F36_13715 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_13720 PF02401 LytB protein C3F36_13725 PF14245 Type IV pilin PilA C3F36_13725 PF07963 Prokaryotic N-terminal methylation motif C3F36_13765 PF02540 NAD synthase C3F36_13765 PF00795 Carbon-nitrogen hydrolase C3F36_13770 PF00543 Nitrogen regulatory protein P-II C3F36_13780 PF02664 S-Ribosylhomocysteinase (LuxS) C3F36_13785 PF00990 Diguanylate cyclase, GGDEF domain C3F36_13790 PF08461 Ribonuclease R winged-helix domain C3F36_13790 PF17876 Cold shock domain C3F36_13790 PF08206 Ribonuclease B OB domain C3F36_13790 PF00773 RNB domain C3F36_13790 PF00575 S1 RNA binding domain C3F36_13795 PF00588 SpoU rRNA Methylase family C3F36_13795 PF08032 RNA 2'-O ribose methyltransferase substrate binding C3F36_13805 PF13673 Acetyltransferase (GNAT) domain C3F36_13810 PF02272 DHHA1 domain C3F36_13810 PF01411 tRNA synthetases class II (A) C3F36_13810 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain C3F36_13815 PF01566 Natural resistance-associated macrophage protein C3F36_13820 PF01250 Ribosomal protein S6 C3F36_13825 PF01084 Ribosomal protein S18 C3F36_13830 PF03948 Ribosomal protein L9, C-terminal domain C3F36_13830 PF01281 Ribosomal protein L9, N-terminal domain C3F36_13835 PF00970 Oxidoreductase FAD-binding domain C3F36_13835 PF00175 Oxidoreductase NAD-binding domain C3F36_13855 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F36_13865 PF14765 Polyketide synthase dehydratase C3F36_13865 PF16197 Ketoacyl-synthetase C-terminal extension C3F36_13865 PF08990 Erythronolide synthase docking C3F36_13865 PF00550 Phosphopantetheine attachment site C3F36_13865 PF08659 KR domain C3F36_13865 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F36_13865 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F36_13865 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_13865 PF00698 Acyl transferase domain C3F36_13870 PF09335 SNARE associated Golgi protein C3F36_13875 PF05193 Peptidase M16 inactive domain C3F36_13875 PF00675 Insulinase (Peptidase family M16) C3F36_13880 PF04262 Glutamate-cysteine ligase C3F36_13885 PF03605 Anaerobic c4-dicarboxylate membrane transporter C3F36_13890 PF10415 Fumarase C C-terminus C3F36_13890 PF00206 Lyase C3F36_13905 PF00166 Chaperonin 10 Kd subunit C3F36_13910 PF00118 TCP-1/cpn60 chaperonin family C3F36_13920 PF03707 Bacterial signalling protein N terminal repeat C3F36_13920 PF00990 Diguanylate cyclase, GGDEF domain C3F36_13920 PF00563 EAL domain C3F36_13930 PF00849 RNA pseudouridylate synthase C3F36_13935 PF18337 RapA N-terminal Tudor like domain C3F36_13935 PF00176 SNF2 family N-terminal domain C3F36_13935 PF18339 RapA N-terminal Tudor like domain 1 C3F36_13935 PF12137 RNA polymerase recycling family C-terminal C3F36_13935 PF00271 Helicase conserved C-terminal domain C3F36_13975 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_13980 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_13985 PF00005 ABC transporter C3F36_13985 PF12857 TOBE-like domain C3F36_13990 PF03466 LysR substrate binding domain C3F36_13990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_13995 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading C3F36_13995 PF18416 N-acetylglucosamine binding protein domain 2 C3F36_14000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_14000 PF17200 Single Cache domain 2 C3F36_14000 PF00672 HAMP domain C3F36_14025 PF11230 Protein of unknown function (DUF3029) C3F36_14030 PF04055 Radical SAM superfamily C3F36_14040 PF03466 LysR substrate binding domain C3F36_14040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_14045 PF00155 Aminotransferase class I and II C3F36_14050 PF11658 Cellulose biosynthesis protein BcsG C3F36_14060 PF06564 Cellulose biosynthesis protein BcsQ C3F36_14070 PF03170 Bacterial cellulose synthase subunit C3F36_14075 PF01270 Glycosyl hydrolases family 8 C3F36_14080 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) C3F36_14085 PF02583 Metal-sensitive transcriptional repressor C3F36_14100 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3F36_14100 PF11852 Domain of unknown function (DUF3372) C3F36_14100 PF17967 Pullulanase N2 domain C3F36_14100 PF18494 Pullulanase Ins domain C3F36_14100 PF03714 Bacterial pullanase-associated domain C3F36_14105 PF00403 Heavy-metal-associated domain C3F36_14110 PF08534 Redoxin C3F36_14115 PF00270 DEAD/DEAH box helicase C3F36_14115 PF00271 Helicase conserved C-terminal domain C3F36_14130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_14140 PF10952 Protein of unknown function (DUF2753) C3F36_14145 PF00378 Enoyl-CoA hydratase/isomerase C3F36_14160 PF00106 short chain dehydrogenase C3F36_14165 PF00929 Exonuclease C3F36_14170 PF04073 Aminoacyl-tRNA editing domain C3F36_14170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F36_14170 PF03129 Anticodon binding domain C3F36_14175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_14175 PF00672 HAMP domain C3F36_14175 PF17200 Single Cache domain 2 C3F36_14180 PF07499 RuvA, C-terminal domain C3F36_14180 PF01330 RuvA N terminal domain C3F36_14185 PF17864 RuvB AAA lid domain C3F36_14185 PF05491 RuvB C-terminal winged helix domain C3F36_14185 PF05496 Holliday junction DNA helicase RuvB P-loop domain C3F36_14190 PF01654 Cytochrome bd terminal oxidase subunit I C3F36_14195 PF02322 Cytochrome bd terminal oxidase subunit II C3F36_14200 PF08173 Membrane bound YbgT-like protein C3F36_14205 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) C3F36_14210 PF03061 Thioesterase superfamily C3F36_14215 PF01618 MotA/TolQ/ExbB proton channel family C3F36_14220 PF02472 Biopolymer transport protein ExbD/TolR C3F36_14230 PF07676 WD40-like Beta Propeller Repeat C3F36_14230 PF04052 TolB amino-terminal domain C3F36_14235 PF00691 OmpA family C3F36_14240 PF16331 TolA binding protein trimerisation C3F36_14240 PF13174 Tetratricopeptide repeat C3F36_14315 PF00672 HAMP domain C3F36_14315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_14320 PF02445 Quinolinate synthetase A protein C3F36_14325 PF01263 Aldose 1-epimerase C3F36_14330 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F36_14330 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F36_14335 PF02446 4-alpha-glucanotransferase C3F36_14340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3F36_14340 PF00128 Alpha amylase, catalytic domain C3F36_14340 PF02806 Alpha amylase, C-terminal all-beta domain C3F36_14345 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) C3F36_14345 PF00128 Alpha amylase, catalytic domain C3F36_14350 PF01641 SelR domain C3F36_14360 PF00293 NUDIX domain C3F36_14365 PF16884 N-terminal domain of oxidoreductase C3F36_14365 PF00107 Zinc-binding dehydrogenase C3F36_14370 PF01047 MarR family C3F36_14385 PF01037 Lrp/AsnC ligand binding domain C3F36_14395 PF07690 Major Facilitator Superfamily C3F36_14400 PF13737 Transposase DDE domain C3F36_14420 PF00209 Sodium:neurotransmitter symporter family C3F36_14425 PF00209 Sodium:neurotransmitter symporter family C3F36_14440 PF00392 Bacterial regulatory proteins, gntR family C3F36_14440 PF00155 Aminotransferase class I and II C3F36_14455 PF01177 Asp/Glu/Hydantoin racemase C3F36_14465 PF00501 AMP-binding enzyme C3F36_14475 PF00583 Acetyltransferase (GNAT) family C3F36_14485 PF07728 AAA domain (dynein-related subfamily) C3F36_14485 PF17868 AAA lid domain C3F36_14485 PF12592 Protein of unknown function (DUF3763) C3F36_14490 PF05762 VWA domain containing CoxE-like protein C3F36_14495 PF00563 EAL domain C3F36_14495 PF00990 Diguanylate cyclase, GGDEF domain C3F36_14495 PF08448 PAS fold C3F36_14500 PF00072 Response regulator receiver domain C3F36_14500 PF00990 Diguanylate cyclase, GGDEF domain C3F36_14505 PF01609 Transposase DDE domain C3F36_14505 PF13006 Insertion element 4 transposase N-terminal C3F36_14510 PF16658 Class II release factor RF3, C-terminal domain C3F36_14510 PF03144 Elongation factor Tu domain 2 C3F36_14510 PF00009 Elongation factor Tu GTP binding domain C3F36_14520 PF01758 Sodium Bile acid symporter family C3F36_14525 PF00583 Acetyltransferase (GNAT) family C3F36_14530 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F36_14540 PF04480 Protein of unknown function (DUF559) C3F36_14545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_14545 PF03466 LysR substrate binding domain C3F36_14550 PF04371 Porphyromonas-type peptidyl-arginine deiminase C3F36_14555 PF01425 Amidase C3F36_14570 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_14570 PF00175 Oxidoreductase NAD-binding domain C3F36_14570 PF00970 Oxidoreductase FAD-binding domain C3F36_14575 PF00271 Helicase conserved C-terminal domain C3F36_14575 PF00270 DEAD/DEAH box helicase C3F36_14585 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase C3F36_14595 PF01609 Transposase DDE domain C3F36_14595 PF13006 Insertion element 4 transposase N-terminal C3F36_14600 PF00005 ABC transporter C3F36_14600 PF02687 FtsX-like permease family C3F36_14600 PF12704 MacB-like periplasmic core domain C3F36_14605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_14610 PF00072 Response regulator receiver domain C3F36_14610 PF00486 Transcriptional regulatory protein, C terminal C3F36_14615 PF00672 HAMP domain C3F36_14615 PF16527 Two-component sensor protein CpxA, periplasmic domain C3F36_14615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_14615 PF00512 His Kinase A (phospho-acceptor) domain C3F36_14635 PF00445 Ribonuclease T2 family C3F36_14640 PF03060 Nitronate monooxygenase C3F36_14675 PF00665 Integrase core domain C3F36_14680 PF01695 IstB-like ATP binding protein C3F36_14690 PF01810 LysE type translocator C3F36_14715 PF05930 Prophage CP4-57 regulatory protein (AlpA) C3F36_14725 PF01420 Type I restriction modification DNA specificity domain C3F36_14750 PF02954 Bacterial regulatory protein, Fis family C3F36_14755 PF01207 Dihydrouridine synthase (Dus) C3F36_14765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_14795 PF00072 Response regulator receiver domain C3F36_14800 PF00854 POT family C3F36_14805 PF00483 Nucleotidyl transferase C3F36_14815 PF00459 Inositol monophosphatase family C3F36_14820 PF03795 YCII-related domain C3F36_14825 PF04279 Intracellular septation protein A C3F36_14830 PF00282 Pyridoxal-dependent decarboxylase conserved domain C3F36_14835 PF03006 Haemolysin-III related C3F36_14840 PF02080 TrkA-C domain C3F36_14840 PF06826 Predicted Permease Membrane Region C3F36_14850 PF07690 Major Facilitator Superfamily C3F36_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_14855 PF03466 LysR substrate binding domain C3F36_14860 PF03413 Peptidase propeptide and YPEB domain C3F36_14860 PF02868 Thermolysin metallopeptidase, alpha-helical domain C3F36_14860 PF01447 Thermolysin metallopeptidase, catalytic domain C3F36_14860 PF07504 Fungalysin/Thermolysin Propeptide Motif C3F36_14860 PF04151 Bacterial pre-peptidase C-terminal domain C3F36_14865 PF13302 Acetyltransferase (GNAT) domain C3F36_14870 PF13302 Acetyltransferase (GNAT) domain C3F36_14880 PF04074 YhcH/YjgK/YiaL C3F36_14885 PF00871 Acetokinase family C3F36_14890 PF00924 Mechanosensitive ion channel C3F36_14895 PF03734 L,D-transpeptidase catalytic domain C3F36_14895 PF17969 L,D-transpeptidase C-terminal domain C3F36_14900 PF00474 Sodium:solute symporter family C3F36_14910 PF00293 NUDIX domain C3F36_14930 PF05598 Transposase domain (DUF772) C3F36_14930 PF01609 Transposase DDE domain C3F36_14935 PF01695 IstB-like ATP binding protein C3F36_14940 PF00665 Integrase core domain C3F36_14960 PF02525 Flavodoxin-like fold C3F36_14965 PF03466 LysR substrate binding domain C3F36_14965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_14970 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ C3F36_14980 PF12848 ABC transporter C3F36_14980 PF00005 ABC transporter C3F36_14985 PF00571 CBS domain C3F36_14985 PF00478 IMP dehydrogenase / GMP reductase domain C3F36_14990 PF00267 Gram-negative porin C3F36_14995 PF00072 Response regulator receiver domain C3F36_14995 PF01584 CheW-like domain C3F36_15000 PF01609 Transposase DDE domain C3F36_15000 PF13006 Insertion element 4 transposase N-terminal C3F36_15005 PF13472 GDSL-like Lipase/Acylhydrolase family C3F36_15010 PF00005 ABC transporter C3F36_15020 PF01370 NAD dependent epimerase/dehydratase family C3F36_15020 PF08338 Domain of unknown function (DUF1731) C3F36_15025 PF12792 CSS motif domain associated with EAL C3F36_15025 PF00563 EAL domain C3F36_15030 PF00155 Aminotransferase class I and II C3F36_15035 PF04389 Peptidase family M28 C3F36_15035 PF01483 Proprotein convertase P-domain C3F36_15040 PF02390 Putative methyltransferase C3F36_15045 PF04320 Protein with unknown function (DUF469) C3F36_15050 PF04960 Glutaminase C3F36_15055 PF00581 Rhodanese-like domain C3F36_15060 PF06004 Bacterial protein of unknown function (DUF903) C3F36_15065 PF00005 ABC transporter C3F36_15065 PF00664 ABC transporter transmembrane region C3F36_15070 PF00561 alpha/beta hydrolase fold C3F36_15085 PF05598 Transposase domain (DUF772) C3F36_15085 PF01609 Transposase DDE domain C3F36_15110 PF06877 Regulator of ribonuclease activity B C3F36_15115 PF00563 EAL domain C3F36_15115 PF03707 Bacterial signalling protein N terminal repeat C3F36_15115 PF00990 Diguanylate cyclase, GGDEF domain C3F36_15135 PF09905 DNA-binding protein VF530 C3F36_15140 PF02666 Phosphatidylserine decarboxylase C3F36_15145 PF03193 RsgA GTPase C3F36_15150 PF00929 Exonuclease C3F36_15190 PF00313 'Cold-shock' DNA-binding domain C3F36_15200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_15200 PF00672 HAMP domain C3F36_15205 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F36_15210 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F36_15255 PF01695 IstB-like ATP binding protein C3F36_15260 PF00665 Integrase core domain C3F36_15280 PF02472 Biopolymer transport protein ExbD/TolR C3F36_15285 PF01618 MotA/TolQ/ExbB proton channel family C3F36_15290 PF01618 MotA/TolQ/ExbB proton channel family C3F36_15300 PF00593 TonB dependent receptor C3F36_15300 PF07715 TonB-dependent Receptor Plug Domain C3F36_15305 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_15310 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_15310 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F36_15315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_15320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_15320 PF00005 ABC transporter C3F36_15325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_15325 PF00005 ABC transporter C3F36_15335 PF01546 Peptidase family M20/M25/M40 C3F36_15335 PF07687 Peptidase dimerisation domain C3F36_15565 PF01653 NAD-dependent DNA ligase adenylation domain C3F36_15565 PF00533 BRCA1 C Terminus (BRCT) domain C3F36_15565 PF03119 NAD-dependent DNA ligase C4 zinc finger domain C3F36_15565 PF12826 Helix-hairpin-helix motif C3F36_15565 PF03120 NAD-dependent DNA ligase OB-fold domain C3F36_15580 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_15580 PF00589 Phage integrase family C3F36_15585 PF00156 Phosphoribosyl transferase domain C3F36_15595 PF07417 Sigma factor-binding transcriptional regulator Crl C3F36_15600 PF00696 Amino acid kinase family C3F36_15600 PF01472 PUA domain C3F36_15605 PF00171 Aldehyde dehydrogenase family C3F36_15615 PF00582 Universal stress protein family C3F36_15630 PF00384 Molybdopterin oxidoreductase C3F36_15630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F36_15630 PF01568 Molydopterin dinucleotide binding domain C3F36_15630 PF04324 BFD-like [2Fe-2S] binding domain C3F36_15635 PF14824 Sirohaem biosynthesis protein central C3F36_15635 PF10414 Sirohaem synthase dimerisation region C3F36_15635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases C3F36_15645 PF00005 ABC transporter C3F36_15650 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_15655 PF00005 ABC transporter C3F36_15660 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F36_15660 PF04324 BFD-like [2Fe-2S] binding domain C3F36_15660 PF13806 Rieske-like [2Fe-2S] domain C3F36_15660 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F36_15660 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F36_15660 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_15665 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F36_15665 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_15665 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F36_15665 PF04324 BFD-like [2Fe-2S] binding domain C3F36_15665 PF13806 Rieske-like [2Fe-2S] domain C3F36_15665 PF18267 Rubredoxin NAD+ reductase C-terminal domain C3F36_15670 PF00294 pfkB family carbohydrate kinase C3F36_15675 PF04227 Indigoidine synthase A like protein C3F36_15680 PF00194 Eukaryotic-type carbonic anhydrase C3F36_15685 PF01695 IstB-like ATP binding protein C3F36_15690 PF00665 Integrase core domain C3F36_15705 PF00994 Probable molybdopterin binding domain C3F36_15710 PF13358 DDE superfamily endonuclease C3F36_15710 PF13592 Winged helix-turn helix C3F36_15720 PF06738 Putative threonine/serine exporter C3F36_15725 PF12821 Threonine/Serine exporter, ThrE C3F36_15730 PF00186 Dihydrofolate reductase C3F36_15735 PF00571 CBS domain C3F36_15735 PF00005 ABC transporter C3F36_15740 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_15745 PF04069 Substrate binding domain of ABC-type glycine betaine transport system C3F36_15750 PF01507 Phosphoadenosine phosphosulfate reductase family C3F36_15755 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain C3F36_15755 PF01077 Nitrite and sulphite reductase 4Fe-4S domain C3F36_15760 PF00258 Flavodoxin C3F36_15760 PF00175 Oxidoreductase NAD-binding domain C3F36_15760 PF00667 FAD binding domain C3F36_15765 PF02567 Phenazine biosynthesis-like protein C3F36_15770 PF01609 Transposase DDE domain C3F36_15770 PF13006 Insertion element 4 transposase N-terminal C3F36_15775 PF00152 tRNA synthetases class II (D, K and N) C3F36_15775 PF01336 OB-fold nucleic acid binding domain C3F36_15785 PF02743 Cache domain C3F36_15785 PF00672 HAMP domain C3F36_15785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_15790 PF03616 Sodium/glutamate symporter C3F36_15795 PF00710 Asparaginase, N-terminal C3F36_15795 PF17763 Glutaminase/Asparaginase C-terminal domain C3F36_15800 PF07023 Protein of unknown function (DUF1315) C3F36_15805 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain C3F36_15805 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain C3F36_15820 PF01343 Peptidase family S49 C3F36_15825 PF00724 NADH:flavin oxidoreductase / NADH oxidase family C3F36_15825 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_15830 PF00881 Nitroreductase family C3F36_15845 PF12464 Maltose acetyltransferase C3F36_15845 PF00132 Bacterial transferase hexapeptide (six repeats) C3F36_15855 PF00107 Zinc-binding dehydrogenase C3F36_15855 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_15860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_15860 PF03466 LysR substrate binding domain C3F36_15865 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C3F36_15865 PF02378 Phosphotransferase system, EIIC C3F36_15865 PF00367 phosphotransferase system, EIIB C3F36_15870 PF00474 Sodium:solute symporter family C3F36_15875 PF06196 Protein of unknown function (DUF997) C3F36_15880 PF02785 Biotin carboxylase C-terminal domain C3F36_15880 PF00289 Biotin carboxylase, N-terminal domain C3F36_15880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F36_15885 PF00364 Biotin-requiring enzyme C3F36_15890 PF01220 Dehydroquinase class II C3F36_15895 PF01609 Transposase DDE domain C3F36_15895 PF13006 Insertion element 4 transposase N-terminal C3F36_15900 PF00501 AMP-binding enzyme C3F36_15900 PF16177 Acetyl-coenzyme A synthetase N-terminus C3F36_15900 PF13193 AMP-binding enzyme C-terminal domain C3F36_15915 PF02613 Nitrate reductase delta subunit C3F36_15930 PF00464 Serine hydroxymethyltransferase C3F36_15940 PF03477 ATP cone domain C3F36_15945 PF01872 RibD C-terminal domain C3F36_15945 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3F36_15950 PF00677 Lumazine binding domain C3F36_15955 PF00925 GTP cyclohydrolase II C3F36_15955 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase C3F36_15960 PF00885 6,7-dimethyl-8-ribityllumazine synthase C3F36_15965 PF01029 NusB family C3F36_15970 PF00586 AIR synthase related protein, N-terminal domain C3F36_15970 PF02769 AIR synthase related protein, C-terminal domain C3F36_15975 PF04608 Phosphatidylglycerophosphatase A C3F36_15980 PF00005 ABC transporter C3F36_15980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_15985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_16000 PF13292 1-deoxy-D-xylulose-5-phosphate synthase C3F36_16000 PF02779 Transketolase, pyrimidine binding domain C3F36_16000 PF02780 Transketolase, C-terminal domain C3F36_16005 PF00348 Polyprenyl synthetase C3F36_16010 PF02609 Exonuclease VII small subunit C3F36_16015 PF01618 MotA/TolQ/ExbB proton channel family C3F36_16020 PF13677 Membrane MotB of proton-channel complex MotA/MotB C3F36_16020 PF00691 OmpA family C3F36_16025 PF01272 Transcription elongation factor, GreA/GreB, C-term C3F36_16025 PF03449 Transcription elongation factor, N-terminal C3F36_16035 PF01985 CRS1 / YhbY (CRM) domain C3F36_16040 PF01728 FtsJ-like methyltransferase C3F36_16045 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_16045 PF01434 Peptidase family M41 C3F36_16045 PF17862 AAA+ lid domain C3F36_16045 PF06480 FtsH Extracellular C3F36_16050 PF00809 Pterin binding enzyme C3F36_16055 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F36_16055 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F36_16055 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F36_16055 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F36_16060 PF00121 Triosephosphate isomerase C3F36_16065 PF03840 Preprotein translocase SecG subunit C3F36_16080 PF17384 RimP C-terminal SH3 domain C3F36_16080 PF02576 RimP N-terminal domain C3F36_16085 PF13184 NusA-like KH domain C3F36_16085 PF08529 NusA N-terminal domain C3F36_16085 PF00575 S1 RNA binding domain C3F36_16090 PF04760 Translation initiation factor IF-2, N-terminal region C3F36_16090 PF08364 Bacterial translation initiation factor IF-2 associated region C3F36_16090 PF11987 Translation-initiation factor 2 C3F36_16090 PF00009 Elongation factor Tu GTP binding domain C3F36_16095 PF02033 Ribosome-binding factor A C3F36_16100 PF01509 TruB family pseudouridylate synthase (N terminal domain) C3F36_16100 PF09157 Pseudouridine synthase II TruB, C-terminal C3F36_16100 PF16198 tRNA pseudouridylate synthase B C-terminal domain C3F36_16105 PF00312 Ribosomal protein S15 C3F36_16110 PF01138 3' exoribonuclease family, domain 1 C3F36_16110 PF03725 3' exoribonuclease family, domain 2 C3F36_16110 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain C3F36_16110 PF00013 KH domain C3F36_16110 PF00575 S1 RNA binding domain C3F36_16115 PF07690 Major Facilitator Superfamily C3F36_16120 PF02635 DsrE/DsrF-like family C3F36_16125 PF06476 Protein of unknown function (DUF1090) C3F36_16130 PF01609 Transposase DDE domain C3F36_16130 PF13006 Insertion element 4 transposase N-terminal C3F36_16135 PF12838 4Fe-4S dicluster domain C3F36_16170 PF00665 Integrase core domain C3F36_16175 PF01695 IstB-like ATP binding protein C3F36_16195 PF01609 Transposase DDE domain C3F36_16195 PF05598 Transposase domain (DUF772) C3F36_16225 PF00665 Integrase core domain C3F36_16230 PF01695 IstB-like ATP binding protein C3F36_16235 PF01609 Transposase DDE domain C3F36_16235 PF05598 Transposase domain (DUF772) C3F36_16250 PF17969 L,D-transpeptidase C-terminal domain C3F36_16250 PF03734 L,D-transpeptidase catalytic domain C3F36_16260 PF01523 Putative modulator of DNA gyrase C3F36_16265 PF01523 Putative modulator of DNA gyrase C3F36_16270 PF00258 Flavodoxin C3F36_16275 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_16275 PF00589 Phage integrase family C3F36_16280 PF01741 Large-conductance mechanosensitive channel, MscL C3F36_16290 PF17768 RecJ OB domain C3F36_16290 PF02272 DHHA1 domain C3F36_16290 PF01368 DHH family C3F36_16295 PF13411 MerR HTH family regulatory protein C3F36_16310 PF02508 Rnf-Nqr subunit, membrane protein C3F36_16320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family C3F36_16320 PF04055 Radical SAM superfamily C3F36_16325 PF03099 Biotin/lipoate A/B protein ligase family C3F36_16330 PF04359 Protein of unknown function (DUF493) C3F36_16335 PF00768 D-alanyl-D-alanine carboxypeptidase C3F36_16335 PF07943 Penicillin-binding protein 5, C-terminal domain C3F36_16340 PF03330 Lytic transglycolase C3F36_16340 PF05036 Sporulation related domain C3F36_16345 PF13406 Transglycosylase SLT domain C3F36_16350 PF01098 Cell cycle protein C3F36_16355 PF03717 Penicillin-binding Protein dimerisation domain C3F36_16355 PF00905 Penicillin binding protein transpeptidase domain C3F36_16360 PF02590 Predicted SPOUT methyltransferase C3F36_16370 PF01467 Cytidylyltransferase-like C3F36_16385 PF13603 Leucyl-tRNA synthetase, Domain 2 C3F36_16385 PF00133 tRNA synthetases class I (I, L, M and V) C3F36_16385 PF08264 Anticodon-binding domain of tRNA C3F36_16390 PF07295 Zinc-ribbon containing domain C3F36_16395 PF00795 Carbon-nitrogen hydrolase C3F36_16400 PF03471 Transporter associated domain C3F36_16400 PF00571 CBS domain C3F36_16405 PF02130 Uncharacterized protein family UPF0054 C3F36_16410 PF02562 PhoH-like protein C3F36_16415 PF00919 Uncharacterized protein family UPF0004 C3F36_16415 PF01938 TRAM domain C3F36_16415 PF04055 Radical SAM superfamily C3F36_16420 PF01494 FAD binding domain C3F36_16430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_16430 PF03466 LysR substrate binding domain C3F36_16440 PF13419 Haloacid dehalogenase-like hydrolase C3F36_16445 PF17151 Periplasmic sensor domain C3F36_16445 PF00990 Diguanylate cyclase, GGDEF domain C3F36_16455 PF17152 Periplasmic sensor domain C3F36_16455 PF00990 Diguanylate cyclase, GGDEF domain C3F36_16465 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain C3F36_16465 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain C3F36_16475 PF03171 2OG-Fe(II) oxygenase superfamily C3F36_16475 PF14226 non-haem dioxygenase in morphine synthesis N-terminal C3F36_16480 PF03180 NLPA lipoprotein C3F36_16485 PF00005 ABC transporter C3F36_16485 PF09383 NIL domain C3F36_16490 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_16495 PF01132 Elongation factor P (EF-P) OB domain C3F36_16495 PF09285 Elongation factor P, C-terminal C3F36_16495 PF08207 Elongation factor P (EF-P) KOW-like domain C3F36_16505 PF00478 IMP dehydrogenase / GMP reductase domain C3F36_16510 PF18030 RimK PreATP-grasp domain C3F36_16510 PF08443 RimK-like ATP-grasp domain C3F36_16515 PF00512 His Kinase A (phospho-acceptor) domain C3F36_16515 PF08521 Two-component sensor kinase N-terminal C3F36_16515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_16520 PF00486 Transcriptional regulatory protein, C terminal C3F36_16520 PF00072 Response regulator receiver domain C3F36_16530 PF00106 short chain dehydrogenase C3F36_16540 PF00501 AMP-binding enzyme C3F36_16555 PF06224 Winged helix DNA-binding domain C3F36_16570 PF02313 Fumarate reductase subunit D C3F36_16575 PF02300 Fumarate reductase subunit C C3F36_16580 PF13183 4Fe-4S dicluster domain C3F36_16580 PF13085 2Fe-2S iron-sulfur cluster binding domain C3F36_16585 PF00890 FAD binding domain C3F36_16585 PF02910 Fumarate reductase flavoprotein C-term C3F36_16595 PF13737 Transposase DDE domain C3F36_16605 PF03009 Glycerophosphoryl diester phosphodiesterase family C3F36_16610 PF12795 Mechanosensitive ion channel porin domain C3F36_16610 PF00924 Mechanosensitive ion channel C3F36_16610 PF12794 Mechanosensitive ion channel inner membrane domain 1 C3F36_16620 PF01476 LysM domain C3F36_16620 PF08525 Opacity-associated protein A N-terminal motif C3F36_16620 PF01551 Peptidase family M23 C3F36_16635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_16635 PF03466 LysR substrate binding domain C3F36_16645 PF13737 Transposase DDE domain C3F36_16655 PF03466 LysR substrate binding domain C3F36_16655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_16660 PF17092 Penicillin-binding protein OB-like domain C3F36_16660 PF00912 Transglycosylase C3F36_16660 PF00905 Penicillin binding protein transpeptidase domain C3F36_16670 PF13737 Transposase DDE domain C3F36_16695 PF07660 Secretin and TonB N terminus short domain C3F36_16695 PF03958 Bacterial type II/III secretion system short domain C3F36_16695 PF00263 Bacterial type II and III secretion system protein C3F36_16695 PF11741 AMIN domain C3F36_16700 PF01202 Shikimate kinase C3F36_16705 PF01761 3-dehydroquinate synthase C3F36_16710 PF05036 Sporulation related domain C3F36_16715 PF02086 D12 class N6 adenine-specific DNA methyltransferase C3F36_16720 PF00834 Ribulose-phosphate 3 epimerase family C3F36_16725 PF13419 Haloacid dehalogenase-like hydrolase C3F36_16730 PF00579 tRNA synthetases class I (W and Y) C3F36_16740 PF00117 Glutamine amidotransferase class-I C3F36_16745 PF00202 Aminotransferase class-III C3F36_16750 PF04958 Arginine N-succinyltransferase beta subunit C3F36_16755 PF00171 Aldehyde dehydrogenase family C3F36_16770 PF13419 Haloacid dehalogenase-like hydrolase C3F36_16775 PF07690 Major Facilitator Superfamily C3F36_16785 PF07859 alpha/beta hydrolase fold C3F36_16795 PF02080 TrkA-C domain C3F36_16795 PF03600 Citrate transporter C3F36_16840 PF02384 N-6 DNA Methylase C3F36_16840 PF12161 HsdM N-terminal domain C3F36_16850 PF01420 Type I restriction modification DNA specificity domain C3F36_16855 PF13749 Putative ATP-dependent DNA helicase recG C-terminal C3F36_16855 PF17191 RecG wedge domain C3F36_16855 PF00270 DEAD/DEAH box helicase C3F36_16865 PF18766 SWI2/SNF2 ATPase C3F36_16865 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) C3F36_16865 PF12008 Type I restriction and modification enzyme - subunit R C terminal C3F36_16885 PF13700 Domain of unknown function (DUF4158) C3F36_16885 PF01526 Tn3 transposase DDE domain C3F36_16890 PF00239 Resolvase, N terminal domain C3F36_16890 PF02796 Helix-turn-helix domain of resolvase C3F36_16905 PF00005 ABC transporter C3F36_16915 PF13533 Biotin-lipoyl like C3F36_16920 PF00440 Bacterial regulatory proteins, tetR family C3F36_16955 PF01381 Helix-turn-helix C3F36_16975 PF13356 Arm DNA-binding domain C3F36_16975 PF00589 Phage integrase family C3F36_16980 PF06071 Protein of unknown function (DUF933) C3F36_16980 PF01926 50S ribosome-binding GTPase C3F36_16985 PF01195 Peptidyl-tRNA hydrolase C3F36_16990 PF14572 Phosphoribosyl synthetase-associated domain C3F36_16990 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase C3F36_17000 PF00288 GHMP kinases N terminal domain C3F36_17000 PF08544 GHMP kinases C terminal C3F36_17005 PF03550 Outer membrane lipoprotein LolB C3F36_17010 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain C3F36_17010 PF01488 Shikimate / quinate 5-dehydrogenase C3F36_17010 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain C3F36_17015 PF03462 PCRF domain C3F36_17015 PF00472 RF-1 domain C3F36_17020 PF17827 PrmC N-terminal domain C3F36_17020 PF13847 Methyltransferase domain C3F36_17030 PF13369 Transglutaminase-like superfamily C3F36_17035 PF00793 DAHP synthetase I family C3F36_17040 PF00375 Sodium:dicarboxylate symporter family C3F36_17045 PF01228 Glycine radical C3F36_17050 PF03167 Uracil DNA glycosylase superfamily C3F36_17065 PF00923 Transaldolase/Fructose-6-phosphate aldolase C3F36_17070 PF01235 Sodium:alanine symporter family C3F36_17075 PF00144 Beta-lactamase C3F36_17080 PF07690 Major Facilitator Superfamily C3F36_17085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_17085 PF03466 LysR substrate binding domain C3F36_17090 PF03652 Holliday junction resolvase C3F36_17095 PF02622 Uncharacterized ACR, COG1678 C3F36_17100 PF02951 Prokaryotic glutathione synthetase, N-terminal domain C3F36_17100 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain C3F36_17105 PF04452 RNA methyltransferase C3F36_17110 PF04231 Endonuclease I C3F36_17115 PF17283 SprT-like zinc ribbon domain C3F36_17115 PF10263 SprT-like family C3F36_17120 PF00438 S-adenosylmethionine synthetase, N-terminal domain C3F36_17120 PF02772 S-adenosylmethionine synthetase, central domain C3F36_17120 PF02773 S-adenosylmethionine synthetase, C-terminal domain C3F36_17125 PF00456 Transketolase, thiamine diphosphate binding domain C3F36_17125 PF02779 Transketolase, pyrimidine binding domain C3F36_17125 PF02780 Transketolase, C-terminal domain C3F36_17130 PF01609 Transposase DDE domain C3F36_17130 PF13808 DDE_Tnp_1-associated C3F36_17135 PF01042 Endoribonuclease L-PSP C3F36_17150 PF03702 Anhydro-N-acetylmuramic acid kinase C3F36_17155 PF08525 Opacity-associated protein A N-terminal motif C3F36_17155 PF01551 Peptidase family M23 C3F36_17155 PF01476 LysM domain C3F36_17160 PF00579 tRNA synthetases class I (W and Y) C3F36_17165 PF01204 Trehalase C3F36_17175 PF01161 Phosphatidylethanolamine-binding protein C3F36_17185 PF03466 LysR substrate binding domain C3F36_17185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_17195 PF00155 Aminotransferase class I and II C3F36_17200 PF07690 Major Facilitator Superfamily C3F36_17205 PF03466 LysR substrate binding domain C3F36_17205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_17210 PF00106 short chain dehydrogenase C3F36_17215 PF01343 Peptidase family S49 C3F36_17215 PF08496 Peptidase family S49 N-terminal C3F36_17220 PF04996 Succinylarginine dihydrolase C3F36_17225 PF01396 Topoisomerase DNA binding C4 zinc finger C3F36_17225 PF01751 Toprim domain C3F36_17225 PF01131 DNA topoisomerase C3F36_17225 PF08272 Topoisomerase I zinc-ribbon-like C3F36_17235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_17235 PF08447 PAS fold C3F36_17250 PF01869 BadF/BadG/BcrA/BcrD ATPase family C3F36_17260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_17260 PF00005 ABC transporter C3F36_17265 PF00005 ABC transporter C3F36_17265 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_17270 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_17270 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F36_17275 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_17285 PF00919 Uncharacterized protein family UPF0004 C3F36_17285 PF04055 Radical SAM superfamily C3F36_17285 PF18693 TRAM domain C3F36_17295 PF01022 Bacterial regulatory protein, arsR family C3F36_17300 PF01758 Sodium Bile acid symporter family C3F36_17305 PF03960 ArsC family C3F36_17315 PF02049 Flagellar hook-basal body complex protein FliE C3F36_17320 PF08345 Flagellar M-ring protein C-terminal C3F36_17320 PF01514 Secretory protein of YscJ/FliF family C3F36_17325 PF14841 FliG middle domain C3F36_17325 PF01706 FliG C-terminal domain C3F36_17325 PF14842 FliG N-terminal domain C3F36_17335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain C3F36_17335 PF18269 T3SS EscN ATPase C-terminal domain C3F36_17355 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3F36_17355 PF02154 Flagellar motor switch protein FliM C3F36_17360 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term C3F36_17365 PF04347 Flagellar biosynthesis protein, FliO C3F36_17370 PF00813 FliP family C3F36_17375 PF01313 Bacterial export proteins, family 3 C3F36_17380 PF01311 Bacterial export proteins, family 1 C3F36_17385 PF01312 FlhB HrpN YscU SpaS Family C3F36_17390 PF00771 FHIPEP family C3F36_17395 PF00448 SRP54-type protein, GTPase domain C3F36_17400 PF10609 NUBPL iron-transfer P-loop NTPase C3F36_17405 PF04542 Sigma-70 region 2 C3F36_17405 PF04539 Sigma-70 region 3 C3F36_17405 PF04545 Sigma-70, region 4 C3F36_17410 PF00072 Response regulator receiver domain C3F36_17415 PF04344 Chemotaxis phosphatase, CheZ C3F36_17420 PF07194 P2 response regulator binding domain C3F36_17420 PF01627 Hpt domain C3F36_17420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_17420 PF02895 Signal transducing histidine kinase, homodimeric domain C3F36_17420 PF01584 CheW-like domain C3F36_17425 PF01339 CheB methylesterase C3F36_17425 PF00072 Response regulator receiver domain C3F36_17430 PF01618 MotA/TolQ/ExbB proton channel family C3F36_17435 PF13677 Membrane MotB of proton-channel complex MotA/MotB C3F36_17435 PF00691 OmpA family C3F36_17440 PF13614 AAA domain C3F36_17450 PF01584 CheW-like domain C3F36_17460 PF00005 ABC transporter C3F36_17465 PF03379 CcmB protein C3F36_17470 PF01578 Cytochrome C assembly protein C3F36_17475 PF04995 Heme exporter protein D (CcmD) C3F36_17480 PF03100 CcmE C3F36_17485 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal C3F36_17485 PF01578 Cytochrome C assembly protein C3F36_17490 PF08534 Redoxin C3F36_17495 PF03918 Cytochrome C biogenesis protein C3F36_17505 PF04333 MlaA lipoprotein C3F36_17510 PF02777 Iron/manganese superoxide dismutases, C-terminal domain C3F36_17510 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain C3F36_17515 PF00462 Glutaredoxin C3F36_17520 PF01029 NusB family C3F36_17520 PF01189 16S rRNA methyltransferase RsmB/F C3F36_17535 PF01243 Pyridoxamine 5'-phosphate oxidase C3F36_17535 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region C3F36_17540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_17540 PF03466 LysR substrate binding domain C3F36_17545 PF01546 Peptidase family M20/M25/M40 C3F36_17565 PF13508 Acetyltransferase (GNAT) domain C3F36_17580 PF01081 KDPG and KHG aldolase C3F36_17635 PF00589 Phage integrase family C3F36_17635 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_17685 PF04381 Putative exonuclease, RdgC C3F36_17720 PF06630 Enterobacterial exodeoxyribonuclease VIII C3F36_17720 PF12684 PDDEXK-like domain of unknown function (DUF3799) C3F36_17790 PF03796 DnaB-like helicase C terminal domain C3F36_17790 PF00772 DnaB-like helicase N terminal domain C3F36_18000 PF01668 SmpB protein C3F36_18005 PF03364 Polyketide cyclase / dehydrase and lipid transport C3F36_18015 PF13460 NAD(P)H-binding C3F36_18020 PF04355 SmpA / OmlA family C3F36_18025 PF00465 Iron-containing alcohol dehydrogenase C3F36_18030 PF01048 Phosphorylase superfamily C3F36_18035 PF00849 RNA pseudouridylate synthase C3F36_18040 PF01156 Inosine-uridine preferring nucleoside hydrolase C3F36_18055 PF07509 Protein of unknown function (DUF1523) C3F36_18060 PF00672 HAMP domain C3F36_18060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_18065 PF01810 LysE type translocator C3F36_18075 PF03471 Transporter associated domain C3F36_18075 PF02080 TrkA-C domain C3F36_18075 PF00999 Sodium/hydrogen exchanger family C3F36_18085 PF02557 D-alanyl-D-alanine carboxypeptidase C3F36_18090 PF01546 Peptidase family M20/M25/M40 C3F36_18090 PF07687 Peptidase dimerisation domain C3F36_18095 PF03960 ArsC family C3F36_18105 PF03606 C4-dicarboxylate anaerobic carrier C3F36_18110 PF07687 Peptidase dimerisation domain C3F36_18110 PF01546 Peptidase family M20/M25/M40 C3F36_18120 PF03605 Anaerobic c4-dicarboxylate membrane transporter C3F36_18125 PF00152 tRNA synthetases class II (D, K and N) C3F36_18125 PF01336 OB-fold nucleic acid binding domain C3F36_18145 PF06968 Biotin and Thiamin Synthesis associated domain C3F36_18145 PF04055 Radical SAM superfamily C3F36_18150 PF00155 Aminotransferase class I and II C3F36_18155 PF08241 Methyltransferase domain C3F36_18155 PF12697 Alpha/beta hydrolase family C3F36_18165 PF01435 Peptidase family M48 C3F36_18170 PF03473 MOSC domain C3F36_18170 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_18170 PF03476 MOSC N-terminal beta barrel domain C3F36_18170 PF03473 MOSC domain C3F36_18170 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_18170 PF03476 MOSC N-terminal beta barrel domain C3F36_18175 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region C3F36_18175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster C3F36_18175 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_18180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain C3F36_18180 PF10371 Domain of unknown function C3F36_18180 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II C3F36_18180 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase C3F36_18180 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg C3F36_18185 PF04325 Protein of unknown function (DUF465) C3F36_18195 PF01554 MatE C3F36_18215 PF00291 Pyridoxal-phosphate dependent enzyme C3F36_18220 PF00465 Iron-containing alcohol dehydrogenase C3F36_18230 PF00440 Bacterial regulatory proteins, tetR family C3F36_18230 PF08359 YsiA-like protein, C-terminal region C3F36_18235 PF00171 Aldehyde dehydrogenase family C3F36_18245 PF00877 NlpC/P60 family C3F36_18250 PF03466 LysR substrate binding domain C3F36_18250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_18270 PF08003 Protein of unknown function (DUF1698) C3F36_18275 PF13649 Methyltransferase domain C3F36_18280 PF01904 Protein of unknown function DUF72 C3F36_18290 PF00152 tRNA synthetases class II (D, K and N) C3F36_18290 PF02938 GAD domain C3F36_18290 PF01336 OB-fold nucleic acid binding domain C3F36_18295 PF01709 Transcriptional regulator C3F36_18300 PF08019 Phosphoethanolamine transferase EptA/EptB C3F36_18300 PF00884 Sulfatase C3F36_18305 PF01047 MarR family C3F36_18305 PF00480 ROK family C3F36_18310 PF01979 Amidohydrolase family C3F36_18315 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase C3F36_18320 PF02378 Phosphotransferase system, EIIC C3F36_18320 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 C3F36_18320 PF00367 phosphotransferase system, EIIB C3F36_18325 PF02838 Glycosyl hydrolase family 20, domain 2 C3F36_18325 PF00728 Glycosyl hydrolase family 20, catalytic domain C3F36_18325 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain C3F36_18325 PF03173 Putative carbohydrate binding domain C3F36_18330 PF00749 tRNA synthetases class I (E and Q), catalytic domain C3F36_18330 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain C3F36_18335 PF01475 Ferric uptake regulator family C3F36_18345 PF00258 Flavodoxin C3F36_18350 PF01402 Ribbon-helix-helix protein, copG family C3F36_18360 PF00561 alpha/beta hydrolase fold C3F36_18365 PF17206 SeqA protein N-terminal domain C3F36_18365 PF03925 SeqA protein C-terminal domain C3F36_18370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I C3F36_18370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II C3F36_18370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III C3F36_18370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain C3F36_18380 PF01047 MarR family C3F36_18385 PF13406 Transglycosylase SLT domain C3F36_18390 PF01066 CDP-alcohol phosphatidyltransferase C3F36_18395 PF00005 ABC transporter C3F36_18405 PF13416 Bacterial extracellular solute-binding protein C3F36_18410 PF00403 Heavy-metal-associated domain C3F36_18410 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_18410 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F36_18415 PF02627 Carboxymuconolactone decarboxylase family C3F36_18435 PF07244 Surface antigen variable number repeat C3F36_18435 PF01103 Surface antigen C3F36_18435 PF17243 POTRA domain TamA domain 1 C3F36_18440 PF04357 TamB, inner membrane protein subunit of TAM complex C3F36_18460 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein C3F36_18465 PF03707 Bacterial signalling protein N terminal repeat C3F36_18465 PF00990 Diguanylate cyclase, GGDEF domain C3F36_18465 PF00563 EAL domain C3F36_18470 PF01464 Transglycosylase SLT domain C3F36_18470 PF14718 Soluble lytic murein transglycosylase L domain C3F36_18475 PF00356 Bacterial regulatory proteins, lacI family C3F36_18485 PF03061 Thioesterase superfamily C3F36_18495 PF03372 Endonuclease/Exonuclease/phosphatase family C3F36_18500 PF01464 Transglycosylase SLT domain C3F36_18500 PF01476 LysM domain C3F36_18505 PF00753 Metallo-beta-lactamase superfamily C3F36_18505 PF16123 Hydroxyacylglutathione hydrolase C-terminus C3F36_18510 PF08241 Methyltransferase domain C3F36_18515 PF00075 RNase H C3F36_18520 PF00929 Exonuclease C3F36_18530 PF11849 Domain of unknown function (DUF3369) C3F36_18535 PF02770 Acyl-CoA dehydrogenase, middle domain C3F36_18535 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F36_18535 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F36_18535 PF09317 Domain of unknown function (DUF1974) C3F36_18540 PF13580 SIS domain C3F36_18545 PF13230 Glutamine amidotransferases class-II C3F36_18555 PF01933 Uncharacterised protein family UPF0052 C3F36_18565 PF00512 His Kinase A (phospho-acceptor) domain C3F36_18565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_18565 PF00072 Response regulator receiver domain C3F36_18565 PF09456 RcsC Alpha-Beta-Loop (ABL) C3F36_18580 PF00072 Response regulator receiver domain C3F36_18580 PF00196 Bacterial regulatory proteins, luxR family C3F36_18585 PF00672 HAMP domain C3F36_18585 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term C3F36_18585 PF07730 Histidine kinase C3F36_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_18590 PF04055 Radical SAM superfamily C3F36_18590 PF06463 Molybdenum Cofactor Synthesis C C3F36_18595 PF00037 4Fe-4S binding domain C3F36_18595 PF12800 4Fe-4S binding domain C3F36_18595 PF13187 4Fe-4S dicluster domain C3F36_18605 PF10518 TAT (twin-arginine translocation) pathway signal sequence C3F36_18605 PF01568 Molydopterin dinucleotide binding domain C3F36_18605 PF00384 Molybdopterin oxidoreductase C3F36_18605 PF04879 Molybdopterin oxidoreductase Fe4S4 domain C3F36_18610 PF12838 4Fe-4S dicluster domain C3F36_18610 PF12800 4Fe-4S binding domain C3F36_18615 PF12801 4Fe-4S binding domain C3F36_18615 PF13237 4Fe-4S dicluster domain C3F36_18620 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) C3F36_18625 PF03264 NapC/NirT cytochrome c family, N-terminal region C3F36_18630 PF00994 Probable molybdopterin binding domain C3F36_18635 PF01967 MoaC family C3F36_18640 PF02597 ThiS family C3F36_18645 PF02391 MoaE protein C3F36_18655 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_18660 PF03459 TOBE domain C3F36_18660 PF00005 ABC transporter C3F36_18665 PF12697 Alpha/beta hydrolase family C3F36_18670 PF06406 StbA protein C3F36_18680 PF00899 ThiF family C3F36_18685 PF03454 MoeA C-terminal region (domain IV) C3F36_18685 PF03453 MoeA N-terminal region (domain I and II) C3F36_18685 PF00994 Probable molybdopterin binding domain C3F36_18690 PF01227 GTP cyclohydrolase I C3F36_18695 PF17200 Single Cache domain 2 C3F36_18695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_18695 PF00672 HAMP domain C3F36_18700 PF00672 HAMP domain C3F36_18700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_18705 PF01268 Formate--tetrahydrofolate ligase C3F36_18715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_18715 PF03466 LysR substrate binding domain C3F36_18720 PF04264 YceI-like domain C3F36_18745 PF07687 Peptidase dimerisation domain C3F36_18745 PF01546 Peptidase family M20/M25/M40 C3F36_18755 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain C3F36_18755 PF17944 Arginine decarboxylase C-terminal helical extension C3F36_18755 PF17810 Arginine decarboxylase helical bundle domain C3F36_18770 PF00563 EAL domain C3F36_18770 PF00990 Diguanylate cyclase, GGDEF domain C3F36_18770 PF03707 Bacterial signalling protein N terminal repeat C3F36_18775 PF00300 Histidine phosphatase superfamily (branch 1) C3F36_18780 PF01844 HNH endonuclease C3F36_18785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F36_18795 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase C3F36_18795 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain C3F36_18800 PF00849 RNA pseudouridylate synthase C3F36_18800 PF01479 S4 domain C3F36_18805 PF07690 Major Facilitator Superfamily C3F36_18815 PF03466 LysR substrate binding domain C3F36_18815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_18825 PF10689 Protein of unknown function (DUF2496) C3F36_18830 PF03061 Thioesterase superfamily C3F36_18835 PF04391 Protein of unknown function (DUF533) C3F36_18845 PF00155 Aminotransferase class I and II C3F36_18845 PF00392 Bacterial regulatory proteins, gntR family C3F36_18855 PF02322 Cytochrome bd terminal oxidase subunit II C3F36_18865 PF07690 Major Facilitator Superfamily C3F36_18870 PF00248 Aldo/keto reductase family C3F36_18890 PF03466 LysR substrate binding domain C3F36_18890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_18895 PF00370 FGGY family of carbohydrate kinases, N-terminal domain C3F36_18895 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3F36_18900 PF00230 Major intrinsic protein C3F36_18905 PF07690 Major Facilitator Superfamily C3F36_18910 PF00455 DeoR C terminal sensor domain C3F36_18910 PF08220 DeoR-like helix-turn-helix domain C3F36_18915 PF01266 FAD dependent oxidoreductase C3F36_18915 PF16901 C-terminal domain of alpha-glycerophosphate oxidase C3F36_18920 PF03009 Glycerophosphoryl diester phosphodiesterase family C3F36_18925 PF00793 DAHP synthetase I family C3F36_18930 PF01817 Chorismate mutase type II C3F36_18930 PF02153 Prephenate dehydrogenase C3F36_18935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_18935 PF03466 LysR substrate binding domain C3F36_18940 PF04219 Protein of unknown function, DUF C3F36_18945 PF03974 Ecotin C3F36_18965 PF00326 Prolyl oligopeptidase family C3F36_18965 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain C3F36_18970 PF07715 TonB-dependent Receptor Plug Domain C3F36_18970 PF00593 TonB dependent receptor C3F36_18975 PF00884 Sulfatase C3F36_18975 PF11893 Domain of unknown function (DUF3413) C3F36_18980 PF07208 Protein of unknown function (DUF1414) C3F36_18985 PF04245 37-kD nucleoid-associated bacterial protein C3F36_18990 PF01547 Bacterial extracellular solute-binding protein C3F36_18995 PF14785 Maltose transport system permease protein MalF P2 domain C3F36_18995 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19000 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19005 PF00005 ABC transporter C3F36_19005 PF08402 TOBE domain C3F36_19010 PF03976 Polyphosphate kinase 2 (PPK2) C3F36_19015 PF00561 alpha/beta hydrolase fold C3F36_19025 PF01594 AI-2E family transporter C3F36_19030 PF01206 Sulfurtransferase TusA C3F36_19035 PF13181 Tetratricopeptide repeat C3F36_19035 PF01435 Peptidase family M48 C3F36_19040 PF00578 AhpC/TSA family C3F36_19045 PF03960 ArsC family C3F36_19060 PF04336 Acyl carrier protein phosphodiesterase C3F36_19070 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_19075 PF01979 Amidohydrolase family C3F36_19080 PF03956 Lysine exporter LysO C3F36_19085 PF00005 ABC transporter C3F36_19090 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_19095 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19100 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19105 PF13006 Insertion element 4 transposase N-terminal C3F36_19105 PF01609 Transposase DDE domain C3F36_19115 PF04055 Radical SAM superfamily C3F36_19120 PF00563 EAL domain C3F36_19120 PF00990 Diguanylate cyclase, GGDEF domain C3F36_19120 PF03707 Bacterial signalling protein N terminal repeat C3F36_19125 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_19125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F36_19130 PF07678 A-macroglobulin TED domain C3F36_19130 PF01835 MG2 domain C3F36_19130 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain C3F36_19130 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain C3F36_19130 PF17962 Bacterial macroglobulin domain 6 C3F36_19130 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain C3F36_19130 PF11974 Bacterial alpha-2-macroglobulin MG3 domain C3F36_19130 PF00207 Alpha-2-macroglobulin family C3F36_19130 PF07703 Alpha-2-macroglobulin bait region domain C3F36_19135 PF00905 Penicillin binding protein transpeptidase domain C3F36_19135 PF00912 Transglycosylase C3F36_19135 PF06832 Penicillin-Binding Protein C-terminus Family C3F36_19145 PF02568 Thiamine biosynthesis protein (ThiI) C3F36_19145 PF02926 THUMP domain C3F36_19155 PF03458 UPF0126 domain C3F36_19160 PF00700 Bacterial flagellin C-terminal helical region C3F36_19160 PF00669 Bacterial flagellin N-terminal helical region C3F36_19160 PF07196 Flagellin hook IN motif C3F36_19165 PF00700 Bacterial flagellin C-terminal helical region C3F36_19165 PF07196 Flagellin hook IN motif C3F36_19165 PF00669 Bacterial flagellin N-terminal helical region C3F36_19170 PF00669 Bacterial flagellin N-terminal helical region C3F36_19170 PF00700 Bacterial flagellin C-terminal helical region C3F36_19170 PF07196 Flagellin hook IN motif C3F36_19180 PF07195 Flagellar hook-associated protein 2 C-terminus C3F36_19180 PF07196 Flagellin hook IN motif C3F36_19180 PF02465 Flagellar hook-associated protein 2 N-terminus C3F36_19185 PF02561 Flagellar protein FliS C3F36_19205 PF08666 SAF domain C3F36_19205 PF03102 NeuB family C3F36_19220 PF00202 Aminotransferase class-III C3F36_19225 PF02348 Cytidylyltransferase C3F36_19235 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family C3F36_19240 PF02719 Polysaccharide biosynthesis protein C3F36_19245 PF01497 Periplasmic binding protein C3F36_19255 PF01048 Phosphorylase superfamily C3F36_19265 PF02535 ZIP Zinc transporter C3F36_19270 PF12729 Four helix bundle sensory module for signal transduction C3F36_19270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_19270 PF00672 HAMP domain C3F36_19275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily C3F36_19280 PF00633 Helix-hairpin-helix motif C3F36_19280 PF00730 HhH-GPD superfamily base excision DNA repair protein C3F36_19280 PF10576 Iron-sulfur binding domain of endonuclease III C3F36_19285 PF02508 Rnf-Nqr subunit, membrane protein C3F36_19290 PF04205 FMN-binding domain C3F36_19295 PF03116 NQR2, RnfD, RnfE family C3F36_19300 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit C3F36_19300 PF12838 4Fe-4S dicluster domain C3F36_19300 PF10531 SLBB domain C3F36_19300 PF13375 RnfC Barrel sandwich hybrid domain C3F36_19305 PF04060 Putative Fe-S cluster C3F36_19310 PF02508 Rnf-Nqr subunit, membrane protein C3F36_19315 PF00892 EamA-like transporter family C3F36_19325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_19325 PF08447 PAS fold C3F36_19325 PF13426 PAS domain C3F36_19335 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase C3F36_19335 PF07055 Enoyl reductase FAD binding domain C3F36_19335 PF12241 Trans-2-enoyl-CoA reductase catalytic region C3F36_19340 PF03606 C4-dicarboxylate anaerobic carrier C3F36_19345 PF00155 Aminotransferase class I and II C3F36_19355 PF00462 Glutaredoxin C3F36_19360 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family C3F36_19365 PF04851 Type III restriction enzyme, res subunit C3F36_19365 PF00271 Helicase conserved C-terminal domain C3F36_19370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion C3F36_19370 PF00529 HlyD membrane-fusion protein of T1SS C3F36_19375 PF11742 Protein of unknown function (DUF3302) C3F36_19380 PF02554 Carbon starvation protein CstA C3F36_19385 PF04397 LytTr DNA-binding domain C3F36_19385 PF00072 Response regulator receiver domain C3F36_19390 PF07694 5TMR of 5TMR-LYT C3F36_19390 PF06580 Histidine kinase C3F36_19395 PF00072 Response regulator receiver domain C3F36_19400 PF00171 Aldehyde dehydrogenase family C3F36_19400 PF00465 Iron-containing alcohol dehydrogenase C3F36_19405 PF01914 MarC family integral membrane protein C3F36_19410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_19415 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19420 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F36_19420 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_19425 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_19425 PF00005 ABC transporter C3F36_19430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_19430 PF00005 ABC transporter C3F36_19435 PF03741 Integral membrane protein TerC family C3F36_19440 PF00842 Alanine racemase, C-terminal domain C3F36_19440 PF01168 Alanine racemase, N-terminal domain C3F36_19450 PF00375 Sodium:dicarboxylate symporter family C3F36_19470 PF01979 Amidohydrolase family C3F36_19480 PF01609 Transposase DDE domain C3F36_19480 PF13006 Insertion element 4 transposase N-terminal C3F36_19485 PF00672 HAMP domain C3F36_19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_19490 PF01230 HIT domain C3F36_19525 PF07549 SecD/SecF GG Motif C3F36_19525 PF13721 SecD export protein N-terminal TM region C3F36_19525 PF02355 Protein export membrane protein C3F36_19530 PF07549 SecD/SecF GG Motif C3F36_19530 PF02355 Protein export membrane protein C3F36_19545 PF05661 Protein of unknown function (DUF808) C3F36_19550 PF01432 Peptidase family M3 C3F36_19550 PF08439 Oligopeptidase F C3F36_19555 PF01432 Peptidase family M3 C3F36_19555 PF08439 Oligopeptidase F C3F36_19560 PF05728 Uncharacterised protein family (UPF0227) C3F36_19565 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_19570 PF01906 Putative heavy-metal-binding C3F36_19575 PF00884 Sulfatase C3F36_19585 PF00696 Amino acid kinase family C3F36_19585 PF01842 ACT domain C3F36_19590 PF00583 Acetyltransferase (GNAT) family C3F36_19590 PF00696 Amino acid kinase family C3F36_19595 PF01625 Peptide methionine sulfoxide reductase C3F36_19620 PF03466 LysR substrate binding domain C3F36_19620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_19625 PF02652 L-lactate permease C3F36_19630 PF02754 Cysteine-rich domain C3F36_19635 PF02589 LUD domain C3F36_19635 PF11870 Domain of unknown function (DUF3390) C3F36_19635 PF13183 4Fe-4S dicluster domain C3F36_19640 PF02589 LUD domain C3F36_19645 PF02913 FAD linked oxidases, C-terminal domain C3F36_19645 PF01565 FAD binding domain C3F36_19685 PF00005 ABC transporter C3F36_19705 PF07690 Major Facilitator Superfamily C3F36_19725 PF01593 Flavin containing amine oxidoreductase C3F36_19730 PF03239 Iron permease FTR1 family C3F36_19760 PF04168 A predicted alpha-helical domain with a conserved ER motif. C3F36_19760 PF14403 Circularly permuted ATP-grasp type 2 C3F36_19765 PF14403 Circularly permuted ATP-grasp type 2 C3F36_19780 PF13358 DDE superfamily endonuclease C3F36_19780 PF13592 Winged helix-turn helix C3F36_19790 PF13358 DDE superfamily endonuclease C3F36_19790 PF13592 Winged helix-turn helix C3F36_19805 PF01609 Transposase DDE domain C3F36_19805 PF13808 DDE_Tnp_1-associated C3F36_19810 PF00905 Penicillin binding protein transpeptidase domain C3F36_19825 PF02796 Helix-turn-helix domain of resolvase C3F36_19825 PF00239 Resolvase, N terminal domain C3F36_19835 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_19835 PF00589 Phage integrase family C3F36_19845 PF00665 Integrase core domain C3F36_19845 PF02796 Helix-turn-helix domain of resolvase C3F36_19850 PF01695 IstB-like ATP binding protein C3F36_19880 PF02796 Helix-turn-helix domain of resolvase C3F36_19880 PF00665 Integrase core domain C3F36_19885 PF01695 IstB-like ATP binding protein C3F36_19915 PF02796 Helix-turn-helix domain of resolvase C3F36_19915 PF00665 Integrase core domain C3F36_19920 PF01695 IstB-like ATP binding protein C3F36_19960 PF13592 Winged helix-turn helix C3F36_19960 PF13358 DDE superfamily endonuclease C3F36_19980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain C3F36_19980 PF00476 DNA polymerase family A C3F36_19980 PF01612 3'-5' exonuclease C3F36_19980 PF01367 5'-3' exonuclease, C-terminal SAM fold C3F36_20000 PF05154 TM2 domain C3F36_20005 PF01695 IstB-like ATP binding protein C3F36_20010 PF00665 Integrase core domain C3F36_20015 PF01435 Peptidase family M48 C3F36_20025 PF00589 Phage integrase family C3F36_20025 PF14659 Phage integrase, N-terminal SAM-like domain C3F36_20025 PF13356 Arm DNA-binding domain C3F36_20050 PF02498 BRO family, N-terminal domain C3F36_20050 PF10548 P22AR C-terminal domain C3F36_20065 PF00069 Protein kinase domain C3F36_20065 PF03793 PASTA domain C3F36_20085 PF01740 STAS domain C3F36_20085 PF00916 Sulfate permease family C3F36_20100 PF00665 Integrase core domain C3F36_20105 PF01695 IstB-like ATP binding protein C3F36_20125 PF02796 Helix-turn-helix domain of resolvase C3F36_20125 PF00239 Resolvase, N terminal domain C3F36_20135 PF05638 Type VI secretion system effector, Hcp C3F36_20140 PF04717 Type VI secretion system, phage-baseplate injector C3F36_20210 PF13737 Transposase DDE domain C3F36_20215 PF05598 Transposase domain (DUF772) C3F36_20215 PF01609 Transposase DDE domain C3F36_20225 PF13662 Toprim domain C3F36_20225 PF02132 RecR protein C3F36_20235 PF00183 Hsp90 protein C3F36_20235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase C3F36_20240 PF05191 Adenylate kinase, active site lid C3F36_20245 PF00762 Ferrochelatase C3F36_20250 PF01124 MAPEG family C3F36_20255 PF00294 pfkB family carbohydrate kinase C3F36_20260 PF17200 Single Cache domain 2 C3F36_20260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_20260 PF00672 HAMP domain C3F36_20275 PF00990 Diguanylate cyclase, GGDEF domain C3F36_20275 PF00563 EAL domain C3F36_20275 PF03707 Bacterial signalling protein N terminal repeat C3F36_20280 PF00483 Nucleotidyl transferase C3F36_20290 PF07273 Protein of unknown function (DUF1439) C3F36_20295 PF00425 chorismate binding enzyme C3F36_20300 PF00501 AMP-binding enzyme C3F36_20300 PF13193 AMP-binding enzyme C-terminal domain C3F36_20305 PF00550 Phosphopantetheine attachment site C3F36_20305 PF00857 Isochorismatase family C3F36_20310 PF00975 Thioesterase domain C3F36_20310 PF00550 Phosphopantetheine attachment site C3F36_20310 PF00501 AMP-binding enzyme C3F36_20310 PF13193 AMP-binding enzyme C-terminal domain C3F36_20310 PF00668 Condensation domain C3F36_20320 PF07993 Male sterility protein C3F36_20320 PF00501 AMP-binding enzyme C3F36_20320 PF13193 AMP-binding enzyme C-terminal domain C3F36_20320 PF00668 Condensation domain C3F36_20320 PF00550 Phosphopantetheine attachment site C3F36_20325 PF00501 AMP-binding enzyme C3F36_20325 PF13193 AMP-binding enzyme C-terminal domain C3F36_20325 PF00668 Condensation domain C3F36_20325 PF00975 Thioesterase domain C3F36_20325 PF00550 Phosphopantetheine attachment site C3F36_20330 PF01497 Periplasmic binding protein C3F36_20335 PF17837 4'-phosphopantetheinyl transferase N-terminal domain C3F36_20335 PF01648 4'-phosphopantetheinyl transferase superfamily C3F36_20340 PF00005 ABC transporter C3F36_20345 PF01032 FecCD transport family C3F36_20350 PF01032 FecCD transport family C3F36_20355 PF07715 TonB-dependent Receptor Plug Domain C3F36_20355 PF00593 TonB dependent receptor C3F36_20370 PF11143 Protein of unknown function (DUF2919) C3F36_20375 PF01544 CorA-like Mg2+ transporter protein C3F36_20385 PF01012 Electron transfer flavoprotein domain C3F36_20390 PF01012 Electron transfer flavoprotein domain C3F36_20390 PF00766 Electron transfer flavoprotein FAD-binding domain C3F36_20395 PF00266 Aminotransferase class-V C3F36_20400 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) C3F36_20405 PF00793 DAHP synthetase I family C3F36_20410 PF03741 Integral membrane protein TerC family C3F36_20420 PF08891 YfcL protein C3F36_20425 PF00501 AMP-binding enzyme C3F36_20430 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region C3F36_20430 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region C3F36_20435 PF04172 LrgB-like family C3F36_20440 PF03788 LrgA family C3F36_20455 PF00929 Exonuclease C3F36_20455 PF08411 Exonuclease C-terminal C3F36_20460 PF00149 Calcineurin-like phosphoesterase C3F36_20465 PF09924 Uncharacterised conserved protein (DUF2156) C3F36_20465 PF03706 Lysylphosphatidylglycerol synthase TM region C3F36_20475 PF00497 Bacterial extracellular solute-binding proteins, family 3 C3F36_20480 PF00795 Carbon-nitrogen hydrolase C3F36_20485 PF00155 Aminotransferase class I and II C3F36_20490 PF03466 LysR substrate binding domain C3F36_20490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_20495 PF11762 L-arabinose isomerase C-terminal domain C3F36_20495 PF02610 L-arabinose isomerase C3F36_20500 PF00596 Class II Aldolase and Adducin N-terminal domain C3F36_20505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain C3F36_20510 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family C3F36_20515 PF00005 ABC transporter C3F36_20520 PF02653 Branched-chain amino acid transport system / permease component C3F36_20525 PF02311 AraC-like ligand binding domain C3F36_20525 PF12833 Helix-turn-helix domain C3F36_20530 PF00444 Ribosomal protein L36 C3F36_20535 PF01197 Ribosomal protein L31 C3F36_20550 PF01863 Protein of unknown function DUF45 C3F36_20565 PF03606 C4-dicarboxylate anaerobic carrier C3F36_20575 PF01266 FAD dependent oxidoreductase C3F36_20575 PF05430 S-adenosyl-L-methionine-dependent methyltransferase C3F36_20580 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F36_20580 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F36_20595 PF00285 Citrate synthase, C-terminal domain C3F36_20600 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F36_20605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F36_20610 PF00890 FAD binding domain C3F36_20610 PF02910 Fumarate reductase flavoprotein C-term C3F36_20615 PF13085 2Fe-2S iron-sulfur cluster binding domain C3F36_20620 PF16078 2-oxoglutarate dehydrogenase N-terminus C3F36_20620 PF02779 Transketolase, pyrimidine binding domain C3F36_20620 PF16870 2-oxoglutarate dehydrogenase C-terminal C3F36_20620 PF00676 Dehydrogenase E1 component C3F36_20625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) C3F36_20625 PF00364 Biotin-requiring enzyme C3F36_20625 PF02817 e3 binding domain C3F36_20630 PF00549 CoA-ligase C3F36_20630 PF08442 ATP-grasp domain C3F36_20635 PF02629 CoA binding domain C3F36_20635 PF00549 CoA-ligase C3F36_20655 PF03692 Putative zinc- or iron-chelating domain C3F36_20660 PF01695 IstB-like ATP binding protein C3F36_20665 PF00665 Integrase core domain C3F36_20670 PF01228 Glycine radical C3F36_20670 PF02901 Pyruvate formate lyase-like C3F36_20675 PF01226 Formate/nitrite transporter C3F36_20680 PF18381 YcaO cyclodehydratase C-terminal domain C3F36_20680 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding C3F36_20690 PF00893 Small Multidrug Resistance protein C3F36_20695 PF01118 Semialdehyde dehydrogenase, NAD binding domain C3F36_20695 PF02774 Semialdehyde dehydrogenase, dimerisation domain C3F36_20700 PF00313 'Cold-shock' DNA-binding domain C3F36_20705 PF02617 ATP-dependent Clp protease adaptor protein ClpS C3F36_20710 PF02861 Clp amino terminal domain, pathogenicity island component C3F36_20710 PF07724 AAA domain (Cdc48 subfamily) C3F36_20710 PF17871 AAA lid domain C3F36_20710 PF10431 C-terminal, D2-small domain, of ClpB protein C3F36_20710 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_20715 PF01176 Translation initiation factor 1A / IF-1 C3F36_20720 PF04376 Arginine-tRNA-protein transferase, N terminus C3F36_20720 PF04377 Arginine-tRNA-protein transferase, C terminus C3F36_20725 PF03588 Leucyl/phenylalanyl-tRNA protein transferase C3F36_20730 PF05433 Glycine zipper 2TM domain C3F36_20735 PF00990 Diguanylate cyclase, GGDEF domain C3F36_20735 PF05230 MASE2 domain C3F36_20740 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_20745 PF05222 Alanine dehydrogenase/PNT, N-terminal domain C3F36_20745 PF01262 Alanine dehydrogenase/PNT, C-terminal domain C3F36_20750 PF01037 Lrp/AsnC ligand binding domain C3F36_20755 PF17854 FtsK alpha domain C3F36_20755 PF01580 FtsK/SpoIIIE family C3F36_20755 PF13491 4TM region of DNA translocase FtsK/SpoIIIE C3F36_20755 PF09397 Ftsk gamma domain C3F36_20760 PF03548 Outer membrane lipoprotein carrier protein LolA C3F36_20770 PF13808 DDE_Tnp_1-associated C3F36_20770 PF01609 Transposase DDE domain C3F36_20785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) C3F36_20785 PF02403 Seryl-tRNA synthetase N-terminal domain C3F36_20790 PF02674 Colicin V production protein C3F36_20795 PF00156 Phosphoribosyl transferase domain C3F36_20800 PF00232 Glycosyl hydrolase family 1 C3F36_20805 PF00367 phosphotransferase system, EIIB C3F36_20805 PF02378 Phosphotransferase system, EIIC C3F36_20810 PF00356 Bacterial regulatory proteins, lacI family C3F36_20815 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) C3F36_20820 PF00005 ABC transporter C3F36_20825 PF08352 Oligopeptide/dipeptide transporter, C-terminal region C3F36_20825 PF00005 ABC transporter C3F36_20830 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_20830 PF12911 N-terminal TM domain of oligopeptide transport permease C C3F36_20835 PF00528 Binding-protein-dependent transport system inner membrane component C3F36_20840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_20845 PF00158 Sigma-54 interaction domain C3F36_20845 PF02954 Bacterial regulatory protein, Fis family C3F36_20850 PF04012 PspA/IM30 family C3F36_20855 PF06667 Phage shock protein B C3F36_20865 PF04317 YcjX-like family, DUF463 C3F36_20870 PF05128 Domain of unknown function (DUF697) C3F36_20875 PF00351 Biopterin-dependent aromatic amino acid hydroxylase C3F36_20880 PF01329 Pterin 4 alpha carbinolamine dehydratase C3F36_20885 PF00158 Sigma-54 interaction domain C3F36_20885 PF18024 Helix-turn-helix domain C3F36_20890 PF13689 YfiR/HmsC-like C3F36_20895 PF00563 EAL domain C3F36_20895 PF03707 Bacterial signalling protein N terminal repeat C3F36_20895 PF00990 Diguanylate cyclase, GGDEF domain C3F36_20905 PF04055 Radical SAM superfamily C3F36_20910 PF02601 Exonuclease VII, large subunit C3F36_20910 PF13742 OB-fold nucleic acid binding domain C3F36_20920 PF00128 Alpha amylase, catalytic domain C3F36_20920 PF01373 Glycosyl hydrolase family 14 C3F36_20920 PF03423 Carbohydrate binding domain (family 25) C3F36_20935 PF00478 IMP dehydrogenase / GMP reductase domain C3F36_20935 PF00571 CBS domain C3F36_20940 PF02540 NAD synthase C3F36_20940 PF00958 GMP synthase C terminal domain C3F36_20940 PF00117 Glutamine amidotransferase class-I C3F36_20960 PF07804 HipA-like C-terminal domain C3F36_20960 PF13657 HipA N-terminal domain C3F36_20990 PF05724 Thiopurine S-methyltransferase (TPMT) C3F36_20995 PF16187 Middle or third domain of peptidase_M16 C3F36_20995 PF05193 Peptidase M16 inactive domain C3F36_20995 PF00675 Insulinase (Peptidase family M16) C3F36_21000 PF00300 Histidine phosphatase superfamily (branch 1) C3F36_21010 PF00892 EamA-like transporter family C3F36_21015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle C3F36_21020 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain C3F36_21025 PF00270 DEAD/DEAH box helicase C3F36_21025 PF02559 CarD-like/TRCF domain C3F36_21025 PF17757 UvrB interaction domain C3F36_21025 PF03461 TRCF domain C3F36_21025 PF00271 Helicase conserved C-terminal domain C3F36_21035 PF02687 FtsX-like permease family C3F36_21035 PF12704 MacB-like periplasmic core domain C3F36_21040 PF00005 ABC transporter C3F36_21045 PF12704 MacB-like periplasmic core domain C3F36_21045 PF02687 FtsX-like permease family C3F36_21065 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase C3F36_21065 PF05697 Bacterial trigger factor protein (TF) C3F36_21065 PF05698 Bacterial trigger factor protein (TF) C-terminus C3F36_21070 PF00574 Clp protease C3F36_21075 PF07724 AAA domain (Cdc48 subfamily) C3F36_21075 PF06689 ClpX C4-type zinc finger C3F36_21075 PF10431 C-terminal, D2-small domain, of ClpB protein C3F36_21080 PF02190 ATP-dependent protease La (LON) substrate-binding domain C3F36_21080 PF00004 ATPase family associated with various cellular activities (AAA) C3F36_21080 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F36_21085 PF00216 Bacterial DNA-binding protein C3F36_21090 PF13145 PPIC-type PPIASE domain C3F36_21095 PF12848 ABC transporter C3F36_21095 PF00005 ABC transporter C3F36_21100 PF00474 Sodium:solute symporter family C3F36_21105 PF04341 Protein of unknown function, DUF485 C3F36_21120 PF00378 Enoyl-CoA hydratase/isomerase C3F36_21125 PF01235 Sodium:alanine symporter family C3F36_21135 PF06167 Glucose-regulated metallo-peptidase M90 C3F36_21140 PF01184 GPR1/FUN34/yaaH family C3F36_21150 PF09278 MerR, DNA binding C3F36_21150 PF00376 MerR family regulatory protein C3F36_21155 PF00682 HMGL-like C3F36_21160 PF00364 Biotin-requiring enzyme C3F36_21160 PF00289 Biotin carboxylase, N-terminal domain C3F36_21160 PF02785 Biotin carboxylase C-terminal domain C3F36_21160 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain C3F36_21165 PF00378 Enoyl-CoA hydratase/isomerase C3F36_21170 PF01039 Carboxyl transferase domain C3F36_21175 PF02770 Acyl-CoA dehydrogenase, middle domain C3F36_21175 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F36_21175 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F36_21180 PF00171 Aldehyde dehydrogenase family C3F36_21185 PF02771 Acyl-CoA dehydrogenase, N-terminal domain C3F36_21185 PF02770 Acyl-CoA dehydrogenase, middle domain C3F36_21185 PF00441 Acyl-CoA dehydrogenase, C-terminal domain C3F36_21190 PF00378 Enoyl-CoA hydratase/isomerase C3F36_21195 PF00378 Enoyl-CoA hydratase/isomerase C3F36_21200 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase C3F36_21200 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase C3F36_21210 PF13520 Amino acid permease C3F36_21215 PF01925 Sulfite exporter TauE/SafE C3F36_21270 PF13737 Transposase DDE domain C3F36_21280 PF01695 IstB-like ATP binding protein C3F36_21285 PF00665 Integrase core domain C3F36_21300 PF10711 Hypothetical protein (DUF2513) C3F36_21305 PF12706 Beta-lactamase superfamily domain C3F36_21310 PF02653 Branched-chain amino acid transport system / permease component C3F36_21315 PF02653 Branched-chain amino acid transport system / permease component C3F36_21320 PF00005 ABC transporter C3F36_21325 PF13407 Periplasmic binding protein domain C3F36_21330 PF03466 LysR substrate binding domain C3F36_21330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_21345 PF02634 FdhD/NarQ family C3F36_21350 PF00384 Molybdopterin oxidoreductase C3F36_21355 PF00072 Response regulator receiver domain C3F36_21355 PF00990 Diguanylate cyclase, GGDEF domain C3F36_21360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_21360 PF03466 LysR substrate binding domain C3F36_21365 PF00232 Glycosyl hydrolase family 1 C3F36_21375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_21375 PF03466 LysR substrate binding domain C3F36_21385 PF00933 Glycosyl hydrolase family 3 N terminal domain C3F36_21390 PF01261 Xylose isomerase-like TIM barrel C3F36_21395 PF02894 Oxidoreductase family, C-terminal alpha/beta domain C3F36_21395 PF01408 Oxidoreductase family, NAD-binding Rossmann fold C3F36_21400 PF03466 LysR substrate binding domain C3F36_21400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_21410 PF03279 Bacterial lipid A biosynthesis acyltransferase C3F36_21415 PF03279 Bacterial lipid A biosynthesis acyltransferase C3F36_21425 PF05726 Pirin C-terminal cupin domain C3F36_21425 PF02678 Pirin C3F36_21430 PF00136 DNA polymerase family B C3F36_21430 PF03104 DNA polymerase family B, exonuclease domain C3F36_21465 PF06786 Uncharacterised protein family (UPF0253) C3F36_21470 PF00677 Lumazine binding domain C3F36_21485 PF13419 Haloacid dehalogenase-like hydrolase C3F36_21490 PF02222 ATP-grasp domain C3F36_21490 PF01370 NAD dependent epimerase/dehydratase family C3F36_21495 PF00892 EamA-like transporter family C3F36_21500 PF02525 Flavodoxin-like fold C3F36_21525 PF17783 CvfB-like winged helix domain C3F36_21525 PF13509 S1 domain C3F36_21535 PF04269 Protein of unknown function, DUF440 C3F36_21545 PF00912 Transglycosylase C3F36_21550 PF04269 Protein of unknown function, DUF440 C3F36_21555 PF03776 Septum formation topological specificity factor MinE C3F36_21560 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain C3F36_21565 PF03775 Septum formation inhibitor MinC, C-terminal domain C3F36_21565 PF05209 Septum formation inhibitor MinC, N-terminal domain C3F36_21570 PF05166 YcgL domain C3F36_21575 PF13406 Transglycosylase SLT domain C3F36_21580 PF03315 Serine dehydratase beta chain C3F36_21580 PF03313 Serine dehydratase alpha chain C3F36_21590 PF03315 Serine dehydratase beta chain C3F36_21590 PF03313 Serine dehydratase alpha chain C3F36_21595 PF06865 Pyrimidine/purine nucleoside phosphorylase C3F36_21600 PF00375 Sodium:dicarboxylate symporter family C3F36_21605 PF00376 MerR family regulatory protein C3F36_21605 PF09278 MerR, DNA binding C3F36_21610 PF02803 Thiolase, C-terminal domain C3F36_21610 PF00108 Thiolase, N-terminal domain C3F36_21615 PF00563 EAL domain C3F36_21615 PF08668 HDOD domain C3F36_21620 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) C3F36_21625 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) C3F36_21635 PF04542 Sigma-70 region 2 C3F36_21635 PF08281 Sigma-70, region 4 C3F36_21660 PF01882 Protein of unknown function DUF58 C3F36_21665 PF17863 AAA lid domain C3F36_21665 PF07726 ATPase family associated with various cellular activities (AAA) C3F36_21670 PF00108 Thiolase, N-terminal domain C3F36_21670 PF02803 Thiolase, C-terminal domain C3F36_21675 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain C3F36_21675 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain C3F36_21675 PF00378 Enoyl-CoA hydratase/isomerase C3F36_21685 PF07152 YaeQ protein C3F36_21705 PF07690 Major Facilitator Superfamily C3F36_21710 PF00005 ABC transporter C3F36_21715 PF01032 FecCD transport family C3F36_21730 PF05433 Glycine zipper 2TM domain C3F36_21735 PF13193 AMP-binding enzyme C-terminal domain C3F36_21735 PF00501 AMP-binding enzyme C3F36_21740 PF08279 HTH domain C3F36_21740 PF13280 WYL domain C3F36_21750 PF01502 Phosphoribosyl-AMP cyclohydrolase C3F36_21750 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase C3F36_21755 PF00977 Histidine biosynthesis protein C3F36_21770 PF00072 Response regulator receiver domain C3F36_21775 PF00977 Histidine biosynthesis protein C3F36_21780 PF00117 Glutamine amidotransferase class-I C3F36_21785 PF00475 Imidazoleglycerol-phosphate dehydratase C3F36_21785 PF08645 Polynucleotide kinase 3 phosphatase C3F36_21790 PF00155 Aminotransferase class I and II C3F36_21795 PF00815 Histidinol dehydrogenase C3F36_21800 PF01634 ATP phosphoribosyltransferase C3F36_21800 PF08029 HisG, C-terminal domain C3F36_21810 PF04851 Type III restriction enzyme, res subunit C3F36_21810 PF13307 Helicase C-terminal domain C3F36_21815 PF00814 Glycoprotease family C3F36_21825 PF00561 alpha/beta hydrolase fold C3F36_21830 PF00501 AMP-binding enzyme C3F36_21830 PF13193 AMP-binding enzyme C-terminal domain C3F36_21835 PF01612 3'-5' exonuclease C3F36_21835 PF00570 HRDC domain C3F36_21845 PF00892 EamA-like transporter family C3F36_21855 PF01207 Dihydrouridine synthase (Dus) C3F36_21860 PF04304 Protein of unknown function (DUF454) C3F36_21865 PF00156 Phosphoribosyl transferase domain C3F36_21870 PF12169 DNA polymerase III subunits gamma and tau domain III C3F36_21870 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding C3F36_21870 PF12170 DNA polymerase III tau subunit V interacting with alpha C3F36_21875 PF02575 YbaB/EbfC DNA-binding family C3F36_21880 PF03466 LysR substrate binding domain C3F36_21880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family C3F36_21885 PF02678 Pirin C3F36_21885 PF05726 Pirin C-terminal cupin domain C3F36_21895 PF00072 Response regulator receiver domain C3F36_21895 PF00196 Bacterial regulatory proteins, luxR family C3F36_21905 PF11898 Domain of unknown function (DUF3418) C3F36_21905 PF00270 DEAD/DEAH box helicase C3F36_21905 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold C3F36_21905 PF00271 Helicase conserved C-terminal domain C3F36_21905 PF04408 Helicase associated domain (HA2) C3F36_21915 PF01386 Ribosomal L25p family C3F36_21925 PF00072 Response regulator receiver domain C3F36_21930 PF00753 Metallo-beta-lactamase superfamily C3F36_21940 PF00586 AIR synthase related protein, N-terminal domain C3F36_21940 PF02769 AIR synthase related protein, C-terminal domain C3F36_21955 PF10672 S-adenosylmethionine-dependent methyltransferase C3F36_21955 PF17785 PUA-like domain C3F36_21960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_21960 PF00672 HAMP domain C3F36_21960 PF12729 Four helix bundle sensory module for signal transduction C3F36_21965 PF00708 Acylphosphatase C3F36_21970 PF02798 Glutathione S-transferase, N-terminal domain C3F36_21970 PF00043 Glutathione S-transferase, C-terminal domain C3F36_21975 PF08264 Anticodon-binding domain of tRNA C3F36_21975 PF09334 tRNA synthetases class I (M) C3F36_21975 PF01588 Putative tRNA binding domain C3F36_21980 PF10609 NUBPL iron-transfer P-loop NTPase C3F36_21985 PF00485 Phosphoribulokinase / Uridine kinase family C3F36_21990 PF00692 dUTPase C3F36_21995 PF01384 Phosphate transporter family C3F36_22000 PF10150 Ribonuclease E/G family C3F36_22000 PF00575 S1 RNA binding domain C3F36_22000 PF12111 Polyribonucleotide phosphorylase C terminal C3F36_22005 PF00849 RNA pseudouridylate synthase C3F36_22005 PF01479 S4 domain C3F36_22010 PF02545 Maf-like protein C3F36_22020 PF02620 Large ribosomal RNA subunit accumulation protein YceD C3F36_22025 PF01783 Ribosomal L32p protein family C3F36_22030 PF02504 Fatty acid synthesis protein C3F36_22035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal C3F36_22035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C3F36_22040 PF00698 Acyl transferase domain C3F36_22050 PF00550 Phosphopantetheine attachment site C3F36_22055 PF00109 Beta-ketoacyl synthase, N-terminal domain C3F36_22055 PF02801 Beta-ketoacyl synthase, C-terminal domain C3F36_22060 PF01063 Amino-transferase class IV C3F36_22065 PF02618 YceG-like family C3F36_22070 PF02223 Thymidylate kinase C3F36_22075 PF09115 DNA polymerase III, delta subunit, C terminal C3F36_22080 PF01026 TatD related DNase C3F36_22085 PF00589 Phage integrase family C3F36_22095 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF C3F36_22095 PF01189 16S rRNA methyltransferase RsmB/F C3F36_22095 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF C3F36_22100 PF02470 MlaD protein C3F36_22105 PF04403 Paraquat-inducible protein A C3F36_22125 PF11871 Domain of unknown function (DUF3391) C3F36_22125 PF01966 HD domain C3F36_22130 PF01966 HD domain C3F36_22130 PF11871 Domain of unknown function (DUF3391) C3F36_22160 PF02796 Helix-turn-helix domain of resolvase C3F36_22160 PF00239 Resolvase, N terminal domain C3F36_22170 PF12833 Helix-turn-helix domain C3F36_22170 PF07883 Cupin domain C3F36_22180 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit C3F36_22195 PF13700 Domain of unknown function (DUF4158) C3F36_22195 PF01526 Tn3 transposase DDE domain C3F36_22200 PF00239 Resolvase, N terminal domain C3F36_22200 PF02796 Helix-turn-helix domain of resolvase C3F36_22205 PF01636 Phosphotransferase enzyme family C3F36_22210 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase C3F36_22225 PF00462 Glutaredoxin C3F36_22230 PF00111 2Fe-2S iron-sulfur cluster binding domain C3F36_22230 PF00970 Oxidoreductase FAD-binding domain C3F36_22230 PF00175 Oxidoreductase NAD-binding domain C3F36_22235 PF00174 Oxidoreductase molybdopterin binding domain C3F36_22255 PF00665 Integrase core domain C3F36_22260 PF01695 IstB-like ATP binding protein C3F36_22270 PF08240 Alcohol dehydrogenase GroES-like domain C3F36_22270 PF00107 Zinc-binding dehydrogenase C3F36_22280 PF00043 Glutathione S-transferase, C-terminal domain C3F36_22280 PF02798 Glutathione S-transferase, N-terminal domain C3F36_22285 PF01625 Peptide methionine sulfoxide reductase C3F36_22290 PF01641 SelR domain C3F36_22295 PF13358 DDE superfamily endonuclease C3F36_22295 PF13592 Winged helix-turn helix C3F36_22300 PF13936 Helix-turn-helix domain C3F36_22300 PF00665 Integrase core domain C3F36_22305 PF01609 Transposase DDE domain C3F36_22305 PF13808 DDE_Tnp_1-associated C3F36_22310 PF01695 IstB-like ATP binding protein C3F36_22315 PF00665 Integrase core domain C3F36_22355 PF01695 IstB-like ATP binding protein C3F36_22360 PF00665 Integrase core domain C3F36_22400 PF07690 Major Facilitator Superfamily C3F36_22405 PF02909 Tetracyclin repressor-like, C-terminal domain C3F36_22405 PF00440 Bacterial regulatory proteins, tetR family C3F36_22415 PF18790 KfrB protein C3F36_22425 PF02796 Helix-turn-helix domain of resolvase C3F36_22425 PF00239 Resolvase, N terminal domain C3F36_22430 PF00376 MerR family regulatory protein C3F36_22430 PF09278 MerR, DNA binding C3F36_22435 PF02411 MerT mercuric transport protein C3F36_22440 PF00403 Heavy-metal-associated domain C3F36_22450 PF07992 Pyridine nucleotide-disulphide oxidoreductase C3F36_22450 PF00403 Heavy-metal-associated domain C3F36_22450 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain C3F36_22455 PF13411 MerR HTH family regulatory protein C3F36_22460 PF05052 MerE protein C3F36_22465 PF00239 Resolvase, N terminal domain C3F36_22465 PF02796 Helix-turn-helix domain of resolvase C3F36_22480 PF01526 Tn3 transposase DDE domain C3F36_22480 PF13700 Domain of unknown function (DUF4158) C3F36_22490 PF00403 Heavy-metal-associated domain C3F36_22495 PF02411 MerT mercuric transport protein C3F36_22500 PF09278 MerR, DNA binding C3F36_22500 PF00376 MerR family regulatory protein C3F36_22515 PF13654 AAA domain C3F36_22515 PF05362 Lon protease (S16) C-terminal proteolytic domain C3F36_22520 PF07977 FabA-like domain C3F36_22525 PF04957 Ribosome modulation factor C3F36_22545 PF02926 THUMP domain C3F36_22545 PF10672 S-adenosylmethionine-dependent methyltransferase C3F36_22545 PF01170 Putative RNA methylase family UPF0020 C3F36_22555 PF07126 Cell-division protein ZapC C3F36_22560 PF01180 Dihydroorotate dehydrogenase C3F36_22565 PF05088 Bacterial NAD-glutamate dehydrogenase C3F36_22575 PF17432 Domain of unknown function (DUF3458_C) ARM repeats C3F36_22575 PF01433 Peptidase family M1 domain C3F36_22575 PF11940 Domain of unknown function (DUF3458) Ig-like fold C3F36_22580 PF11818 C-terminal domain of tail specific protease (DUF3340) C3F36_22580 PF00595 PDZ domain C3F36_22580 PF03572 Peptidase family S41 C3F36_22580 PF17804 Tail specific protease N-terminal domain C3F36_22585 PF04352 ProQ/FINO family C3F36_22585 PF17516 ProQ C-terminal domain C3F36_22590 PF13185 GAF domain C3F36_22600 PF00115 Cytochrome C and Quinol oxidase polypeptide I C3F36_22615 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP C3F36_22615 PF13442 Cytochrome C oxidase, cbb3-type, subunit III C3F36_22625 PF00403 Heavy-metal-associated domain C3F36_22640 PF13545 Crp-like helix-turn-helix domain C3F36_22640 PF00027 Cyclic nucleotide-binding domain C3F36_22645 PF00582 Universal stress protein family C3F36_22650 PF01171 PP-loop family C3F36_22665 PF02798 Glutathione S-transferase, N-terminal domain C3F36_22665 PF00043 Glutathione S-transferase, C-terminal domain C3F36_22670 PF05025 RbsD / FucU transport protein family C3F36_22675 PF00005 ABC transporter C3F36_22680 PF02653 Branched-chain amino acid transport system / permease component C3F36_22685 PF13407 Periplasmic binding protein domain C3F36_22690 PF00294 pfkB family carbohydrate kinase C3F36_22695 PF00356 Bacterial regulatory proteins, lacI family C3F36_22710 PF02146 Sir2 family C3F36_22730 PF00216 Bacterial DNA-binding protein C3F36_22735 PF03483 B3/4 domain C3F36_22735 PF03484 tRNA synthetase B5 domain C3F36_22735 PF03147 Ferredoxin-fold anticodon binding domain C3F36_22735 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain C3F36_22735 PF01588 Putative tRNA binding domain C3F36_22740 PF01409 tRNA synthetases class II core domain (F) C3F36_22740 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain C3F36_22745 PF00589 Phage integrase family C3F36_22745 PF02899 Phage integrase, N-terminal SAM-like domain C3F36_22755 PF01381 Helix-turn-helix C3F36_22775 PF06892 Phage regulatory protein CII (CP76) C3F36_22810 PF00145 C-5 cytosine-specific DNA methylase C3F36_22845 PF13438 Domain of unknown function (DUF4113) C3F36_22845 PF00817 impB/mucB/samB family C3F36_22845 PF11799 impB/mucB/samB family C-terminal domain C3F36_22845 PF11798 IMS family HHH motif C3F36_22850 PF00717 Peptidase S24-like C3F36_22875 PF01609 Transposase DDE domain C3F36_22875 PF05598 Transposase domain (DUF772) C3F36_22885 PF00990 Diguanylate cyclase, GGDEF domain C3F36_22885 PF05230 MASE2 domain C3F36_22895 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_22895 PF08447 PAS fold C3F36_22915 PF13614 AAA domain C3F36_22925 PF01609 Transposase DDE domain C3F36_22945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_22945 PF08447 PAS fold C3F36_22950 PF13358 DDE superfamily endonuclease C3F36_22950 PF13592 Winged helix-turn helix C3F36_22955 PF02796 Helix-turn-helix domain of resolvase C3F36_22955 PF00239 Resolvase, N terminal domain C3F36_22960 PF13700 Domain of unknown function (DUF4158) C3F36_22960 PF01526 Tn3 transposase DDE domain C3F36_22970 PF01815 Rop protein C3F36_22995 PF13614 AAA domain C3F36_23000 PF00171 Aldehyde dehydrogenase family C3F36_23000 PF01619 Proline dehydrogenase C3F36_23000 PF18327 Proline utilization A proline dehydrogenase N-terminal domain C3F36_23000 PF14850 DNA-binding domain of Proline dehydrogenase C3F36_23020 PF02743 Cache domain C3F36_23020 PF00672 HAMP domain C3F36_23020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain C3F36_23040 PF00239 Resolvase, N terminal domain C3F36_23040 PF02796 Helix-turn-helix domain of resolvase C3F36_23045 PF00210 Ferritin-like domain C3F36_23050 PF00141 Peroxidase C3F36_23065 PF00239 Resolvase, N terminal domain C3F36_23065 PF02796 Helix-turn-helix domain of resolvase C3F36_23095 PF05713 Bacterial mobilisation protein (MobC) C3F36_23100 PF03432 Relaxase/Mobilisation nuclease domain