locus-tag class description WM43_00005 PF04055 Radical SAM superfamily WM43_00010 PF12843 Putative quorum-sensing-regulated virulence factor WM43_00015 PF01923 Cobalamin adenosyltransferase WM43_00020 PF00816 H-NS histone family WM43_00025 PF03553 Na+/H+ antiporter family WM43_00030 PF00265 Thymidine kinase WM43_00040 PF10722 Putative bacterial sensory transduction regulator WM43_00075 PF01555 DNA methylase WM43_00135 PF04002 RadC-like JAB domain WM43_00165 PF02796 Helix-turn-helix domain of resolvase WM43_00165 PF00239 Resolvase, N terminal domain WM43_00185 PF00816 H-NS histone family WM43_00190 PF13737 Transposase DDE domain WM43_00205 PF00589 Phage integrase family WM43_00205 PF13356 Arm DNA-binding domain WM43_00210 PF13662 Toprim domain WM43_00210 PF02132 RecR protein WM43_00215 PF00183 Hsp90 protein WM43_00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_00220 PF00005 ABC transporter WM43_00225 PF00005 ABC transporter WM43_00225 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_00230 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00230 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_00235 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00240 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_00245 PF00158 Sigma-54 interaction domain WM43_00245 PF02954 Bacterial regulatory protein, Fis family WM43_00250 PF04012 PspA/IM30 family WM43_00255 PF06667 Phage shock protein B WM43_00265 PF04317 YcjX-like family, DUF463 WM43_00270 PF05128 Domain of unknown function (DUF697) WM43_00275 PF03466 LysR substrate binding domain WM43_00275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00280 PF13416 Bacterial extracellular solute-binding protein WM43_00285 PF08402 TOBE domain WM43_00285 PF00005 ABC transporter WM43_00290 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00295 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00300 PF00171 Aldehyde dehydrogenase family WM43_00310 PF01329 Pterin 4 alpha carbinolamine dehydratase WM43_00315 PF00158 Sigma-54 interaction domain WM43_00315 PF18024 Helix-turn-helix domain WM43_00325 PF17152 Periplasmic sensor domain WM43_00325 PF00990 Diguanylate cyclase, GGDEF domain WM43_00330 PF00691 OmpA family WM43_00335 PF03741 Integral membrane protein TerC family WM43_00345 PF08891 YfcL protein WM43_00350 PF00501 AMP-binding enzyme WM43_00355 PF01053 Cys/Met metabolism PLP-dependent enzyme WM43_00365 PF13460 NAD(P)H-binding WM43_00370 PF03466 LysR substrate binding domain WM43_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00375 PF03466 LysR substrate binding domain WM43_00380 PF07690 Major Facilitator Superfamily WM43_00385 PF02678 Pirin WM43_00385 PF05726 Pirin C-terminal cupin domain WM43_00390 PF00857 Isochorismatase family WM43_00395 PF03466 LysR substrate binding domain WM43_00395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00400 PF03466 LysR substrate binding domain WM43_00405 PF01717 Cobalamin-independent synthase, Catalytic domain WM43_00405 PF08267 Cobalamin-independent synthase, N-terminal domain WM43_00415 PF03466 LysR substrate binding domain WM43_00415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_00420 PF00232 Glycosyl hydrolase family 1 WM43_00425 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding WM43_00425 PF18381 YcaO cyclodehydratase C-terminal domain WM43_00430 PF01226 Formate/nitrite transporter WM43_00435 PF02901 Pyruvate formate lyase-like WM43_00435 PF01228 Glycine radical WM43_00445 PF03692 Putative zinc- or iron-chelating domain WM43_00460 PF00343 Carbohydrate phosphorylase WM43_00465 PF00939 Sodium:sulfate symporter transmembrane region WM43_00470 PF00085 Thioredoxin WM43_00475 PF00672 HAMP domain WM43_00475 PF00072 Response regulator receiver domain WM43_00475 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WM43_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_00475 PF01627 Hpt domain WM43_00475 PF00512 His Kinase A (phospho-acceptor) domain WM43_00480 PF00005 ABC transporter WM43_00480 PF00664 ABC transporter transmembrane region WM43_00485 PF00005 ABC transporter WM43_00485 PF00664 ABC transporter transmembrane region WM43_00510 PF08543 Phosphomethylpyrimidine kinase WM43_00515 PF00465 Iron-containing alcohol dehydrogenase WM43_00520 PF13673 Acetyltransferase (GNAT) domain WM43_00535 PF13673 Acetyltransferase (GNAT) domain WM43_00545 PF00285 Citrate synthase, C-terminal domain WM43_00550 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WM43_00555 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit WM43_00560 PF00890 FAD binding domain WM43_00560 PF02910 Fumarate reductase flavoprotein C-term WM43_00565 PF13085 2Fe-2S iron-sulfur cluster binding domain WM43_00570 PF02779 Transketolase, pyrimidine binding domain WM43_00570 PF16870 2-oxoglutarate dehydrogenase C-terminal WM43_00570 PF00676 Dehydrogenase E1 component WM43_00570 PF16078 2-oxoglutarate dehydrogenase N-terminus WM43_00575 PF02817 e3 binding domain WM43_00575 PF00364 Biotin-requiring enzyme WM43_00575 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WM43_00580 PF08442 ATP-grasp domain WM43_00580 PF00549 CoA-ligase WM43_00585 PF02629 CoA binding domain WM43_00585 PF00549 CoA-ligase WM43_00600 PF01184 GPR1/FUN34/yaaH family WM43_00615 PF09278 MerR, DNA binding WM43_00615 PF00376 MerR family regulatory protein WM43_00620 PF00682 HMGL-like WM43_00625 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WM43_00625 PF02785 Biotin carboxylase C-terminal domain WM43_00625 PF00289 Biotin carboxylase, N-terminal domain WM43_00625 PF00364 Biotin-requiring enzyme WM43_00630 PF00378 Enoyl-CoA hydratase/isomerase WM43_00635 PF01039 Carboxyl transferase domain WM43_00640 PF02770 Acyl-CoA dehydrogenase, middle domain WM43_00640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain WM43_00640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain WM43_00645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain WM43_00645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain WM43_00645 PF02770 Acyl-CoA dehydrogenase, middle domain WM43_00650 PF00378 Enoyl-CoA hydratase/isomerase WM43_00655 PF00378 Enoyl-CoA hydratase/isomerase WM43_00660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase WM43_00660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WM43_00670 PF13520 Amino acid permease WM43_00675 PF01925 Sulfite exporter TauE/SafE WM43_00690 PF01527 Transposase WM43_00695 PF00665 Integrase core domain WM43_00705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_00705 PF00072 Response regulator receiver domain WM43_00705 PF09308 LuxQ, periplasmic WM43_00705 PF00512 His Kinase A (phospho-acceptor) domain WM43_00735 PF00072 Response regulator receiver domain WM43_00735 PF00211 Adenylate and Guanylate cyclase catalytic domain WM43_00740 PF00534 Glycosyl transferases group 1 WM43_00745 PF02397 Bacterial sugar transferase WM43_00750 PF03552 Cellulose synthase WM43_00750 PF00535 Glycosyl transferase family 2 WM43_00750 PF07238 PilZ domain WM43_00755 PF13439 Glycosyltransferase Family 4 WM43_00755 PF00534 Glycosyl transferases group 1 WM43_00835 PF00862 Sucrose synthase WM43_00835 PF00534 Glycosyl transferases group 1 WM43_00840 PF00360 Phytochrome region WM43_00840 PF00563 EAL domain WM43_00840 PF00990 Diguanylate cyclase, GGDEF domain WM43_00840 PF01590 GAF domain WM43_00845 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal WM43_00845 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WM43_00850 PF13247 4Fe-4S dicluster domain WM43_00855 PF03916 Polysulphide reductase, NrfD WM43_00860 PF00374 Nickel-dependent hydrogenase WM43_00865 PF01750 Hydrogenase maturation protease WM43_00870 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE WM43_00875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_00880 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00885 PF00528 Binding-protein-dependent transport system inner membrane component WM43_00885 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_00890 PF00005 ABC transporter WM43_00895 PF00005 ABC transporter WM43_00895 PF08402 TOBE domain WM43_00900 PF02492 CobW/HypB/UreG, nucleotide-binding domain WM43_00905 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA WM43_00910 PF00586 AIR synthase related protein, N-terminal domain WM43_00910 PF02769 AIR synthase related protein, C-terminal domain WM43_00915 PF01924 Hydrogenase formation hypA family WM43_00920 PF01455 HupF/HypC family WM43_00925 PF17788 HypF Kae1-like domain WM43_00925 PF01300 Telomere recombination WM43_00925 PF07503 HypF finger WM43_00925 PF00708 Acylphosphatase WM43_00930 PF09105 Elongation factor SelB, winged helix WM43_00930 PF03144 Elongation factor Tu domain 2 WM43_00930 PF00009 Elongation factor Tu GTP binding domain WM43_00930 PF09106 Elongation factor SelB, winged helix WM43_00930 PF09107 Elongation factor SelB, winged helix WM43_00950 PF01750 Hydrogenase maturation protease WM43_00955 PF07450 Formate hydrogenlyase maturation protein HycH WM43_00960 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WM43_00965 PF12838 4Fe-4S dicluster domain WM43_00970 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WM43_00970 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WM43_00970 PF00374 Nickel-dependent hydrogenase WM43_00975 PF00146 NADH dehydrogenase WM43_00980 PF00361 Proton-conducting membrane transporter WM43_00985 PF00037 4Fe-4S binding domain WM43_00985 PF12798 4Fe-4S binding domain WM43_00990 PF02705 K+ potassium transporter WM43_01005 PF13247 4Fe-4S dicluster domain WM43_01005 PF12800 4Fe-4S binding domain WM43_01010 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_01010 PF00384 Molybdopterin oxidoreductase WM43_01010 PF01568 Molydopterin dinucleotide binding domain WM43_01015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_01015 PF00384 Molybdopterin oxidoreductase WM43_01015 PF01568 Molydopterin dinucleotide binding domain WM43_01025 PF01590 GAF domain WM43_01025 PF00158 Sigma-54 interaction domain WM43_01025 PF02954 Bacterial regulatory protein, Fis family WM43_01030 PF02634 FdhD/NarQ family WM43_01035 PF02774 Semialdehyde dehydrogenase, dimerisation domain WM43_01035 PF01118 Semialdehyde dehydrogenase, NAD binding domain WM43_01040 PF01266 FAD dependent oxidoreductase WM43_01045 PF04244 Deoxyribodipyrimidine photo-lyase-related protein WM43_01050 PF01212 Beta-eliminating lyase WM43_01055 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WM43_01055 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region WM43_01060 PF04172 LrgB-like family WM43_01065 PF03788 LrgA family WM43_01080 PF00929 Exonuclease WM43_01080 PF08411 Exonuclease C-terminal WM43_01100 PF01609 Transposase DDE domain WM43_01100 PF13808 DDE_Tnp_1-associated WM43_01110 PF01926 50S ribosome-binding GTPase WM43_01135 PF00350 Dynamin family WM43_01140 PF01695 IstB-like ATP binding protein WM43_01145 PF00665 Integrase core domain WM43_01195 PF01527 Transposase WM43_01200 PF04055 Radical SAM superfamily WM43_01200 PF13186 Iron-sulfur cluster-binding domain WM43_01210 PF03781 Sulfatase-modifying factor enzyme 1 WM43_01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_01215 PF03466 LysR substrate binding domain WM43_01225 PF07584 Aerotolerance regulator N-terminal WM43_01225 PF13519 von Willebrand factor type A domain WM43_01230 PF13519 von Willebrand factor type A domain WM43_01230 PF07584 Aerotolerance regulator N-terminal WM43_01245 PF07726 ATPase family associated with various cellular activities (AAA) WM43_01245 PF17863 AAA lid domain WM43_01250 PF00884 Sulfatase WM43_01255 PF01966 HD domain WM43_01265 PF00270 DEAD/DEAH box helicase WM43_01265 PF00271 Helicase conserved C-terminal domain WM43_01265 PF04408 Helicase associated domain (HA2) WM43_01265 PF11898 Domain of unknown function (DUF3418) WM43_01265 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold WM43_01275 PF01386 Ribosomal L25p family WM43_01280 PF00376 MerR family regulatory protein WM43_01280 PF09278 MerR, DNA binding WM43_01285 PF00108 Thiolase, N-terminal domain WM43_01285 PF02803 Thiolase, C-terminal domain WM43_01290 PF00563 EAL domain WM43_01290 PF08668 HDOD domain WM43_01295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) WM43_01300 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) WM43_01310 PF04542 Sigma-70 region 2 WM43_01310 PF08281 Sigma-70, region 4 WM43_01320 PF13519 von Willebrand factor type A domain WM43_01335 PF01882 Protein of unknown function DUF58 WM43_01340 PF07726 ATPase family associated with various cellular activities (AAA) WM43_01340 PF17863 AAA lid domain WM43_01345 PF00108 Thiolase, N-terminal domain WM43_01345 PF02803 Thiolase, C-terminal domain WM43_01350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain WM43_01350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain WM43_01350 PF00378 Enoyl-CoA hydratase/isomerase WM43_01355 PF04293 SpoVR like protein WM43_01360 PF04285 Protein of unknown function (DUF444) WM43_01365 PF06798 PrkA serine protein kinase C-terminal domain WM43_01365 PF08298 PrkA AAA domain WM43_01370 PF09382 RQC domain WM43_01370 PF00570 HRDC domain WM43_01370 PF00271 Helicase conserved C-terminal domain WM43_01370 PF00270 DEAD/DEAH box helicase WM43_01370 PF16124 RecQ zinc-binding WM43_01375 PF00375 Sodium:dicarboxylate symporter family WM43_01380 PF03222 Tryptophan/tyrosine permease family WM43_01385 PF00293 NUDIX domain WM43_01390 PF00425 chorismate binding enzyme WM43_01390 PF04715 Anthranilate synthase component I, N terminal region WM43_01400 PF08274 PhnA Zinc-Ribbon WM43_01400 PF03831 PhnA domain WM43_01420 PF00300 Histidine phosphatase superfamily (branch 1) WM43_01425 PF08448 PAS fold WM43_01425 PF00990 Diguanylate cyclase, GGDEF domain WM43_01430 PF01713 Smr domain WM43_01435 PF05175 Methyltransferase small domain WM43_01440 PF01264 Chorismate synthase WM43_01450 PF00270 DEAD/DEAH box helicase WM43_01450 PF00271 Helicase conserved C-terminal domain WM43_01460 PF01124 MAPEG family WM43_01470 PF03222 Tryptophan/tyrosine permease family WM43_01475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WM43_01475 PF00356 Bacterial regulatory proteins, lacI family WM43_01480 PF00381 PTS HPr component phosphorylation site WM43_01480 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_01485 PF00294 pfkB family carbohydrate kinase WM43_01490 PF02378 Phosphotransferase system, EIIC WM43_01490 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WM43_01495 PF10150 Ribonuclease E/G family WM43_01495 PF12111 Polyribonucleotide phosphorylase C terminal WM43_01495 PF00575 S1 RNA binding domain WM43_01500 PF00849 RNA pseudouridylate synthase WM43_01500 PF01479 S4 domain WM43_01505 PF13419 Haloacid dehalogenase-like hydrolase WM43_01510 PF02545 Maf-like protein WM43_01515 PF02620 Large ribosomal RNA subunit accumulation protein YceD WM43_01520 PF01783 Ribosomal L32p protein family WM43_01525 PF02504 Fatty acid synthesis protein WM43_01530 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WM43_01530 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WM43_01535 PF00698 Acyl transferase domain WM43_01545 PF00550 Phosphopantetheine attachment site WM43_01550 PF00109 Beta-ketoacyl synthase, N-terminal domain WM43_01550 PF02801 Beta-ketoacyl synthase, C-terminal domain WM43_01555 PF01063 Amino-transferase class IV WM43_01560 PF02618 YceG-like family WM43_01565 PF02223 Thymidylate kinase WM43_01570 PF09115 DNA polymerase III, delta subunit, C terminal WM43_01575 PF01026 TatD related DNase WM43_01580 PF00589 Phage integrase family WM43_01590 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF WM43_01590 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF WM43_01590 PF01189 16S rRNA methyltransferase RsmB/F WM43_01595 PF02470 MlaD protein WM43_01600 PF04403 Paraquat-inducible protein A WM43_01615 PF00285 Citrate synthase, C-terminal domain WM43_01620 PF03972 MmgE/PrpD family WM43_01635 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain WM43_01635 PF06974 Protein of unknown function (DUF1298) WM43_01660 PF01609 Transposase DDE domain WM43_01660 PF13808 DDE_Tnp_1-associated WM43_01665 PF00106 short chain dehydrogenase WM43_01670 PF01674 Lipase (class 2) WM43_01675 PF07130 YebG protein WM43_01695 PF05362 Lon protease (S16) C-terminal proteolytic domain WM43_01695 PF13654 AAA domain WM43_01700 PF07977 FabA-like domain WM43_01705 PF04957 Ribosome modulation factor WM43_01720 PF01170 Putative RNA methylase family UPF0020 WM43_01720 PF02926 THUMP domain WM43_01720 PF10672 S-adenosylmethionine-dependent methyltransferase WM43_01725 PF00444 Ribosomal protein L36 WM43_01730 PF01197 Ribosomal protein L31 WM43_01740 PF07126 Cell-division protein ZapC WM43_01745 PF01180 Dihydroorotate dehydrogenase WM43_01750 PF05088 Bacterial NAD-glutamate dehydrogenase WM43_01760 PF11940 Domain of unknown function (DUF3458) Ig-like fold WM43_01760 PF17432 Domain of unknown function (DUF3458_C) ARM repeats WM43_01760 PF01433 Peptidase family M1 domain WM43_01765 PF11818 C-terminal domain of tail specific protease (DUF3340) WM43_01765 PF00595 PDZ domain WM43_01765 PF17804 Tail specific protease N-terminal domain WM43_01765 PF03572 Peptidase family S41 WM43_01770 PF04352 ProQ/FINO family WM43_01770 PF17516 ProQ C-terminal domain WM43_01775 PF13185 GAF domain WM43_01785 PF00115 Cytochrome C and Quinol oxidase polypeptide I WM43_01800 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP WM43_01800 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WM43_01810 PF00403 Heavy-metal-associated domain WM43_01825 PF00027 Cyclic nucleotide-binding domain WM43_01825 PF13545 Crp-like helix-turn-helix domain WM43_01830 PF00582 Universal stress protein family WM43_01835 PF01171 PP-loop family WM43_01850 PF08402 TOBE domain WM43_01850 PF00005 ABC transporter WM43_01855 PF00528 Binding-protein-dependent transport system inner membrane component WM43_01860 PF00528 Binding-protein-dependent transport system inner membrane component WM43_01865 PF13416 Bacterial extracellular solute-binding protein WM43_01875 PF13417 Glutathione S-transferase, N-terminal domain WM43_01880 PF05025 RbsD / FucU transport protein family WM43_01885 PF00005 ABC transporter WM43_01890 PF02653 Branched-chain amino acid transport system / permease component WM43_01895 PF13407 Periplasmic binding protein domain WM43_01900 PF00294 pfkB family carbohydrate kinase WM43_01905 PF00356 Bacterial regulatory proteins, lacI family WM43_01910 PF00990 Diguanylate cyclase, GGDEF domain WM43_01910 PF03707 Bacterial signalling protein N terminal repeat WM43_01910 PF00563 EAL domain WM43_01920 PF02146 Sir2 family WM43_01935 PF09456 RcsC Alpha-Beta-Loop (ABL) WM43_01935 PF00512 His Kinase A (phospho-acceptor) domain WM43_01935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_01935 PF00072 Response regulator receiver domain WM43_01940 PF00216 Bacterial DNA-binding protein WM43_01945 PF03483 B3/4 domain WM43_01945 PF03484 tRNA synthetase B5 domain WM43_01945 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain WM43_01945 PF01588 Putative tRNA binding domain WM43_01945 PF03147 Ferredoxin-fold anticodon binding domain WM43_01950 PF01409 tRNA synthetases class II core domain (F) WM43_01950 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain WM43_01955 PF00453 Ribosomal protein L20 WM43_01960 PF01632 Ribosomal protein L35 WM43_01965 PF00707 Translation initiation factor IF-3, C-terminal domain WM43_01965 PF05198 Translation initiation factor IF-3, N-terminal domain WM43_01970 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WM43_01970 PF03129 Anticodon binding domain WM43_01970 PF02824 TGS domain WM43_01970 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WM43_01980 PF04055 Radical SAM superfamily WM43_01985 PF00128 Alpha amylase, catalytic domain WM43_01990 PF00521 DNA gyrase/topoisomerase IV, subunit A WM43_01990 PF03989 DNA gyrase C-terminal domain, beta-propeller WM43_02000 PF13419 Haloacid dehalogenase-like hydrolase WM43_02005 PF03477 ATP cone domain WM43_02005 PF02867 Ribonucleotide reductase, barrel domain WM43_02005 PF00317 Ribonucleotide reductase, all-alpha domain WM43_02010 PF00268 Ribonucleotide reductase, small chain WM43_02015 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_02020 PF06725 3D domain WM43_02020 PF03562 MltA specific insert domain WM43_02025 PF06945 Protein of unknown function (DUF1289) WM43_02035 PF03613 PTS system mannose/fructose/sorbose family IID component WM43_02040 PF03609 PTS system sorbose-specific iic component WM43_02045 PF03830 PTS system sorbose subfamily IIB component WM43_02045 PF03610 PTS system fructose IIA component WM43_02060 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WM43_02060 PF00356 Bacterial regulatory proteins, lacI family WM43_02065 PF06560 Glucose-6-phosphate isomerase (GPI) WM43_02070 PF01384 Phosphate transporter family WM43_02075 PF00692 dUTPase WM43_02080 PF00485 Phosphoribulokinase / Uridine kinase family WM43_02085 PF10609 NUBPL iron-transfer P-loop NTPase WM43_02090 PF01588 Putative tRNA binding domain WM43_02090 PF09334 tRNA synthetases class I (M) WM43_02090 PF08264 Anticodon-binding domain of tRNA WM43_02100 PF00708 Acylphosphatase WM43_02105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_02105 PF00672 HAMP domain WM43_02110 PF00669 Bacterial flagellin N-terminal helical region WM43_02110 PF00700 Bacterial flagellin C-terminal helical region WM43_02110 PF07196 Flagellin hook IN motif WM43_02115 PF17785 PUA-like domain WM43_02115 PF10672 S-adenosylmethionine-dependent methyltransferase WM43_02130 PF02769 AIR synthase related protein, C-terminal domain WM43_02130 PF00586 AIR synthase related protein, N-terminal domain WM43_02140 PF00753 Metallo-beta-lactamase superfamily WM43_02150 PF01612 3'-5' exonuclease WM43_02150 PF00570 HRDC domain WM43_02155 PF13193 AMP-binding enzyme C-terminal domain WM43_02155 PF00501 AMP-binding enzyme WM43_02160 PF12697 Alpha/beta hydrolase family WM43_02170 PF00814 Glycoprotease family WM43_02175 PF04851 Type III restriction enzyme, res subunit WM43_02175 PF13307 Helicase C-terminal domain WM43_02185 PF01634 ATP phosphoribosyltransferase WM43_02185 PF08029 HisG, C-terminal domain WM43_02190 PF00815 Histidinol dehydrogenase WM43_02195 PF00155 Aminotransferase class I and II WM43_02200 PF08645 Polynucleotide kinase 3 phosphatase WM43_02200 PF00475 Imidazoleglycerol-phosphate dehydratase WM43_02205 PF00117 Glutamine amidotransferase class-I WM43_02210 PF00977 Histidine biosynthesis protein WM43_02215 PF00977 Histidine biosynthesis protein WM43_02220 PF01502 Phosphoribosyl-AMP cyclohydrolase WM43_02220 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase WM43_02230 PF07694 5TMR of 5TMR-LYT WM43_02230 PF00990 Diguanylate cyclase, GGDEF domain WM43_02235 PF13193 AMP-binding enzyme C-terminal domain WM43_02235 PF00501 AMP-binding enzyme WM43_02240 PF03606 C4-dicarboxylate anaerobic carrier WM43_02255 PF05433 Glycine zipper 2TM domain WM43_02260 PF01799 [2Fe-2S] binding domain WM43_02260 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_02265 PF00941 FAD binding domain in molybdopterin dehydrogenase WM43_02265 PF03450 CO dehydrogenase flavoprotein C-terminal domain WM43_02270 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase WM43_02270 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain WM43_02275 PF00860 Permease family WM43_02280 PF01979 Amidohydrolase family WM43_02285 PF00860 Permease family WM43_02290 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase WM43_02290 PF01799 [2Fe-2S] binding domain WM43_02290 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain WM43_02295 PF00941 FAD binding domain in molybdopterin dehydrogenase WM43_02300 PF01979 Amidohydrolase family WM43_02305 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WM43_02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_02310 PF12804 MobA-like NTP transferase domain WM43_02320 PF13478 XdhC Rossmann domain WM43_02320 PF02625 XdhC and CoxI family WM43_02325 PF00892 EamA-like transporter family WM43_02335 PF01032 FecCD transport family WM43_02340 PF00005 ABC transporter WM43_02345 PF07690 Major Facilitator Superfamily WM43_02350 PF00696 Amino acid kinase family WM43_02355 PF01979 Amidohydrolase family WM43_02360 PF01546 Peptidase family M20/M25/M40 WM43_02360 PF07687 Peptidase dimerisation domain WM43_02365 PF00291 Pyridoxal-phosphate dependent enzyme WM43_02370 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WM43_02370 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WM43_02400 PF01327 Polypeptide deformylase WM43_02410 PF01965 DJ-1/PfpI family WM43_02420 PF03330 Lytic transglycolase WM43_02420 PF05036 Sporulation related domain WM43_02425 PF16330 MukB hinge domain WM43_02425 PF04310 MukB N-terminal WM43_02430 PF04288 MukE-like family WM43_02435 PF17192 MukF middle domain WM43_02435 PF17193 MukF C-terminal domain WM43_02435 PF03882 MukF winged-helix domain WM43_02445 PF02698 DUF218 domain WM43_02450 PF00121 Triosephosphate isomerase WM43_02455 PF00365 Phosphofructokinase WM43_02460 PF00375 Sodium:dicarboxylate symporter family WM43_02465 PF06865 Pyrimidine/purine nucleoside phosphorylase WM43_02470 PF03313 Serine dehydratase alpha chain WM43_02470 PF03315 Serine dehydratase beta chain WM43_02475 PF03315 Serine dehydratase beta chain WM43_02475 PF03313 Serine dehydratase alpha chain WM43_02480 PF05166 YcgL domain WM43_02485 PF03775 Septum formation inhibitor MinC, C-terminal domain WM43_02485 PF05209 Septum formation inhibitor MinC, N-terminal domain WM43_02490 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WM43_02495 PF03776 Septum formation topological specificity factor MinE WM43_02500 PF04269 Protein of unknown function, DUF440 WM43_02505 PF00912 Transglycosylase WM43_02510 PF04269 Protein of unknown function, DUF440 WM43_02520 PF17783 CvfB-like winged helix domain WM43_02520 PF13509 S1 domain WM43_02545 PF02525 Flavodoxin-like fold WM43_02550 PF00892 EamA-like transporter family WM43_02555 PF01370 NAD dependent epimerase/dehydratase family WM43_02555 PF02222 ATP-grasp domain WM43_02560 PF13419 Haloacid dehalogenase-like hydrolase WM43_02570 PF00677 Lumazine binding domain WM43_02580 PF06786 Uncharacterised protein family (UPF0253) WM43_02585 PF01554 MatE WM43_02630 PF07152 YaeQ protein WM43_02635 PF07840 FadR C-terminal domain WM43_02635 PF00392 Bacterial regulatory proteins, gntR family WM43_02640 PF06450 Bacterial Na+/H+ antiporter B (NhaB) WM43_02645 PF02600 Disulfide bond formation protein DsbB WM43_02650 PF09335 SNARE associated Golgi protein WM43_02660 PF00271 Helicase conserved C-terminal domain WM43_02660 PF04851 Type III restriction enzyme, res subunit WM43_02660 PF12344 Ultra-violet resistance protein B WM43_02660 PF17757 UvrB interaction domain WM43_02660 PF02151 UvrB/uvrC motif WM43_02670 PF06826 Predicted Permease Membrane Region WM43_02670 PF02080 TrkA-C domain WM43_02675 PF02801 Beta-ketoacyl synthase, C-terminal domain WM43_02675 PF00109 Beta-ketoacyl synthase, N-terminal domain WM43_02680 PF05430 S-adenosyl-L-methionine-dependent methyltransferase WM43_02680 PF01266 FAD dependent oxidoreductase WM43_02695 PF03606 C4-dicarboxylate anaerobic carrier WM43_02710 PF01863 Protein of unknown function DUF45 WM43_02725 PF03104 DNA polymerase family B, exonuclease domain WM43_02725 PF00136 DNA polymerase family B WM43_02735 PF00990 Diguanylate cyclase, GGDEF domain WM43_02750 PF03279 Bacterial lipid A biosynthesis acyltransferase WM43_02755 PF03279 Bacterial lipid A biosynthesis acyltransferase WM43_02765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_02765 PF03466 LysR substrate binding domain WM43_02770 PF01261 Xylose isomerase-like TIM barrel WM43_02775 PF02575 YbaB/EbfC DNA-binding family WM43_02780 PF12169 DNA polymerase III subunits gamma and tau domain III WM43_02780 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding WM43_02780 PF12170 DNA polymerase III tau subunit V interacting with alpha WM43_02785 PF00156 Phosphoribosyl transferase domain WM43_02790 PF04304 Protein of unknown function (DUF454) WM43_02795 PF01207 Dihydrouridine synthase (Dus) WM43_02810 PF13419 Haloacid dehalogenase-like hydrolase WM43_02815 PF00883 Cytosol aminopeptidase family, catalytic domain WM43_02815 PF02789 Cytosol aminopeptidase family, N-terminal domain WM43_02855 PF00128 Alpha amylase, catalytic domain WM43_02855 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) WM43_02865 PF11398 Protein of unknown function (DUF2813) WM43_02870 PF14525 AraC-binding-like domain WM43_02870 PF12833 Helix-turn-helix domain WM43_02880 PF03466 LysR substrate binding domain WM43_02880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_02885 PF01925 Sulfite exporter TauE/SafE WM43_02895 PF01047 MarR family WM43_02895 PF00480 ROK family WM43_02900 PF17200 Single Cache domain 2 WM43_02900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_02900 PF00672 HAMP domain WM43_02905 PF02810 SEC-C motif WM43_02910 PF01266 FAD dependent oxidoreductase WM43_02910 PF04324 BFD-like [2Fe-2S] binding domain WM43_02915 PF00890 FAD binding domain WM43_02920 PF02754 Cysteine-rich domain WM43_02920 PF13183 4Fe-4S dicluster domain WM43_02930 PF02335 Cytochrome c552 WM43_02935 PF13435 Cytochrome c554 and c-prime WM43_02935 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) WM43_02940 PF00037 4Fe-4S binding domain WM43_02940 PF13247 4Fe-4S dicluster domain WM43_02945 PF03916 Polysulphide reductase, NrfD WM43_02950 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WM43_02950 PF01578 Cytochrome C assembly protein WM43_02955 PF08534 Redoxin WM43_02960 PF03918 Cytochrome C biogenesis protein WM43_02980 PF00202 Aminotransferase class-III WM43_02985 PF00266 Aminotransferase class-V WM43_02990 PF00392 Bacterial regulatory proteins, gntR family WM43_02990 PF07702 UTRA domain WM43_03000 PF00005 ABC transporter WM43_03005 PF00528 Binding-protein-dependent transport system inner membrane component WM43_03010 PF01266 FAD dependent oxidoreductase WM43_03020 PF06167 Glucose-regulated metallo-peptidase M90 WM43_03030 PF01235 Sodium:alanine symporter family WM43_03065 PF00378 Enoyl-CoA hydratase/isomerase WM43_03080 PF04341 Protein of unknown function, DUF485 WM43_03085 PF00474 Sodium:solute symporter family WM43_03090 PF12848 ABC transporter WM43_03090 PF00005 ABC transporter WM43_03095 PF13145 PPIC-type PPIASE domain WM43_03100 PF00216 Bacterial DNA-binding protein WM43_03105 PF00004 ATPase family associated with various cellular activities (AAA) WM43_03105 PF05362 Lon protease (S16) C-terminal proteolytic domain WM43_03105 PF02190 ATP-dependent protease La (LON) substrate-binding domain WM43_03110 PF07724 AAA domain (Cdc48 subfamily) WM43_03110 PF10431 C-terminal, D2-small domain, of ClpB protein WM43_03110 PF06689 ClpX C4-type zinc finger WM43_03115 PF00574 Clp protease WM43_03120 PF05697 Bacterial trigger factor protein (TF) WM43_03120 PF05698 Bacterial trigger factor protein (TF) C-terminus WM43_03120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_03135 PF12704 MacB-like periplasmic core domain WM43_03135 PF02687 FtsX-like permease family WM43_03140 PF00005 ABC transporter WM43_03145 PF12704 MacB-like periplasmic core domain WM43_03145 PF02687 FtsX-like permease family WM43_03155 PF02559 CarD-like/TRCF domain WM43_03155 PF00270 DEAD/DEAH box helicase WM43_03155 PF17757 UvrB interaction domain WM43_03155 PF03461 TRCF domain WM43_03155 PF00271 Helicase conserved C-terminal domain WM43_03160 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain WM43_03165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_03170 PF00892 EamA-like transporter family WM43_03180 PF00300 Histidine phosphatase superfamily (branch 1) WM43_03185 PF16187 Middle or third domain of peptidase_M16 WM43_03185 PF00675 Insulinase (Peptidase family M16) WM43_03185 PF05193 Peptidase M16 inactive domain WM43_03190 PF05724 Thiopurine S-methyltransferase (TPMT) WM43_03205 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WM43_03205 PF12833 Helix-turn-helix domain WM43_03205 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WM43_03205 PF02805 Metal binding domain of Ada WM43_03215 PF07693 KAP family P-loop domain WM43_03225 PF00958 GMP synthase C terminal domain WM43_03225 PF02540 NAD synthase WM43_03225 PF00117 Glutamine amidotransferase class-I WM43_03230 PF00478 IMP dehydrogenase / GMP reductase domain WM43_03230 PF00571 CBS domain WM43_03235 PF01292 Prokaryotic cytochrome b561 WM43_03240 PF13742 OB-fold nucleic acid binding domain WM43_03240 PF02601 Exonuclease VII, large subunit WM43_03245 PF00392 Bacterial regulatory proteins, gntR family WM43_03245 PF07702 UTRA domain WM43_03250 PF02378 Phosphotransferase system, EIIC WM43_03250 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_03250 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WM43_03255 PF01074 Glycosyl hydrolases family 38 N-terminal domain WM43_03255 PF07748 Glycosyl hydrolases family 38 C-terminal domain WM43_03255 PF09261 Alpha mannosidase middle domain WM43_03260 PF07478 D-ala D-ala ligase C-terminus WM43_03260 PF01820 D-ala D-ala ligase N-terminus WM43_03270 PF00255 Glutathione peroxidase WM43_03275 PF00270 DEAD/DEAH box helicase WM43_03275 PF00271 Helicase conserved C-terminal domain WM43_03280 PF04055 Radical SAM superfamily WM43_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_03285 PF00672 HAMP domain WM43_03290 PF00793 DAHP synthetase I family WM43_03295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WM43_03300 PF00266 Aminotransferase class-V WM43_03305 PF00766 Electron transfer flavoprotein FAD-binding domain WM43_03305 PF01012 Electron transfer flavoprotein domain WM43_03310 PF01012 Electron transfer flavoprotein domain WM43_03320 PF01544 CorA-like Mg2+ transporter protein WM43_03325 PF11143 Protein of unknown function (DUF2919) WM43_03335 PF07273 Protein of unknown function (DUF1439) WM43_03345 PF00483 Nucleotidyl transferase WM43_03350 PF00990 Diguanylate cyclase, GGDEF domain WM43_03350 PF00563 EAL domain WM43_03350 PF03707 Bacterial signalling protein N terminal repeat WM43_03365 PF00294 pfkB family carbohydrate kinase WM43_03375 PF00762 Ferrochelatase WM43_03380 PF05191 Adenylate kinase, active site lid WM43_03385 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) WM43_03390 PF00156 Phosphoribosyl transferase domain WM43_03395 PF02674 Colicin V production protein WM43_03400 PF02403 Seryl-tRNA synthetase N-terminal domain WM43_03400 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WM43_03405 PF12002 MgsA AAA+ ATPase C terminal WM43_03405 PF16193 AAA C-terminal domain WM43_03405 PF00004 ATPase family associated with various cellular activities (AAA) WM43_03410 PF03548 Outer membrane lipoprotein carrier protein LolA WM43_03415 PF13491 4TM region of DNA translocase FtsK/SpoIIIE WM43_03415 PF17854 FtsK alpha domain WM43_03415 PF09397 Ftsk gamma domain WM43_03415 PF01580 FtsK/SpoIIIE family WM43_03420 PF01037 Lrp/AsnC ligand binding domain WM43_03425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain WM43_03425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain WM43_03430 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_03435 PF00990 Diguanylate cyclase, GGDEF domain WM43_03435 PF17158 Membrane-associated sensor, integral membrane domain WM43_03440 PF05433 Glycine zipper 2TM domain WM43_03445 PF03588 Leucyl/phenylalanyl-tRNA protein transferase WM43_03450 PF04377 Arginine-tRNA-protein transferase, C terminus WM43_03450 PF04376 Arginine-tRNA-protein transferase, N terminus WM43_03455 PF01176 Translation initiation factor 1A / IF-1 WM43_03460 PF00004 ATPase family associated with various cellular activities (AAA) WM43_03460 PF02861 Clp amino terminal domain, pathogenicity island component WM43_03460 PF10431 C-terminal, D2-small domain, of ClpB protein WM43_03460 PF17871 AAA lid domain WM43_03460 PF07724 AAA domain (Cdc48 subfamily) WM43_03465 PF02617 ATP-dependent Clp protease adaptor protein ClpS WM43_03470 PF00313 'Cold-shock' DNA-binding domain WM43_03475 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain WM43_03475 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain WM43_03525 PF13808 DDE_Tnp_1-associated WM43_03525 PF01609 Transposase DDE domain WM43_03530 PF13808 DDE_Tnp_1-associated WM43_03530 PF01609 Transposase DDE domain WM43_03535 PF00465 Iron-containing alcohol dehydrogenase WM43_03540 PF02288 Dehydratase medium subunit WM43_03545 PF01609 Transposase DDE domain WM43_03545 PF13808 DDE_Tnp_1-associated WM43_03555 PF13808 DDE_Tnp_1-associated WM43_03555 PF01609 Transposase DDE domain WM43_03560 PF02954 Bacterial regulatory protein, Fis family WM43_03560 PF00989 PAS fold WM43_03560 PF00158 Sigma-54 interaction domain WM43_03565 PF00465 Iron-containing alcohol dehydrogenase WM43_03570 PF03610 PTS system fructose IIA component WM43_03570 PF05524 PEP-utilising enzyme, N-terminal WM43_03570 PF00391 PEP-utilising enzyme, mobile domain WM43_03570 PF00381 PTS HPr component phosphorylation site WM43_03575 PF02734 DAK2 domain WM43_03580 PF02733 Dak1 domain WM43_03585 PF00860 Permease family WM43_03595 PF01527 Transposase WM43_03635 PF03783 Curli production assembly/transport component CsgG WM43_03645 PF10627 Curli assembly protein CsgE WM43_03650 PF00196 Bacterial regulatory proteins, luxR family WM43_03670 PF01609 Transposase DDE domain WM43_03670 PF05598 Transposase domain (DUF772) WM43_03745 PF07804 HipA-like C-terminal domain WM43_03745 PF13657 HipA N-terminal domain WM43_03760 PF00486 Transcriptional regulatory protein, C terminal WM43_03760 PF00072 Response regulator receiver domain WM43_03765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_03765 PF00672 HAMP domain WM43_03765 PF00512 His Kinase A (phospho-acceptor) domain WM43_03775 PF03706 Lysylphosphatidylglycerol synthase TM region WM43_03775 PF09924 Uncharacterised conserved protein (DUF2156) WM43_03790 PF12161 HsdM N-terminal domain WM43_03790 PF02384 N-6 DNA Methylase WM43_03800 PF03695 Uncharacterised protein family (UPF0149) WM43_03800 PF02810 SEC-C motif WM43_03805 PF07728 AAA domain (dynein-related subfamily) WM43_03805 PF17868 AAA lid domain WM43_03805 PF12592 Protein of unknown function (DUF3763) WM43_03810 PF05762 VWA domain containing CoxE-like protein WM43_03815 PF11867 Domain of unknown function (DUF3387) WM43_03815 PF18766 SWI2/SNF2 ATPase WM43_03815 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WM43_03830 PF05598 Transposase domain (DUF772) WM43_03830 PF01609 Transposase DDE domain WM43_03835 PF13737 Transposase DDE domain WM43_03855 PF00990 Diguanylate cyclase, GGDEF domain WM43_03855 PF05230 MASE2 domain WM43_03895 PF01740 STAS domain WM43_03895 PF00916 Sulfate permease family WM43_03910 PF13356 Arm DNA-binding domain WM43_03910 PF00589 Phage integrase family WM43_03940 PF01609 Transposase DDE domain WM43_03940 PF13808 DDE_Tnp_1-associated WM43_03975 PF18273 Type III R-M EcoP15I C-terminal domain WM43_03975 PF01555 DNA methylase WM43_03980 PF04851 Type III restriction enzyme, res subunit WM43_03980 PF08774 VRR-NUC domain WM43_04010 PF11799 impB/mucB/samB family C-terminal domain WM43_04010 PF13438 Domain of unknown function (DUF4113) WM43_04010 PF00817 impB/mucB/samB family WM43_04010 PF11798 IMS family HHH motif WM43_04015 PF00717 Peptidase S24-like WM43_04035 PF00266 Aminotransferase class-V WM43_04060 PF03239 Iron permease FTR1 family WM43_04065 PF01593 Flavin containing amine oxidoreductase WM43_04080 PF07690 Major Facilitator Superfamily WM43_04085 PF03600 Citrate transporter WM43_04095 PF00005 ABC transporter WM43_04120 PF00561 alpha/beta hydrolase fold WM43_04140 PF01625 Peptide methionine sulfoxide reductase WM43_04145 PF00583 Acetyltransferase (GNAT) family WM43_04145 PF00696 Amino acid kinase family WM43_04150 PF01842 ACT domain WM43_04150 PF00696 Amino acid kinase family WM43_04160 PF00884 Sulfatase WM43_04165 PF17676 LD-carboxypeptidase C-terminal domain WM43_04165 PF02016 LD-carboxypeptidase N-terminal domain WM43_04170 PF01734 Patatin-like phospholipase WM43_04175 PF17179 4Fe-4S dicluster domain WM43_04180 PF00175 Oxidoreductase NAD-binding domain WM43_04180 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B WM43_04185 PF13187 4Fe-4S dicluster domain WM43_04185 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WM43_04185 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WM43_04190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WM43_04190 PF14824 Sirohaem biosynthesis protein central WM43_04190 PF10414 Sirohaem synthase dimerisation region WM43_04200 PF01906 Putative heavy-metal-binding WM43_04205 PF05036 Sporulation related domain WM43_04210 PF08245 Mur ligase middle domain WM43_04210 PF02875 Mur ligase family, glutamate ligase domain WM43_04215 PF01039 Carboxyl transferase domain WM43_04215 PF17848 Acetyl-coA carboxylase zinc finger domain WM43_04220 PF01416 tRNA pseudouridine synthase WM43_04230 PF02774 Semialdehyde dehydrogenase, dimerisation domain WM43_04230 PF01118 Semialdehyde dehydrogenase, NAD binding domain WM43_04240 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WM43_04240 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WM43_04240 PF11890 Domain of unknown function (DUF3410) WM43_04245 PF01569 PAP2 superfamily WM43_04250 PF00929 Exonuclease WM43_04255 PF13726 Na+-H+ antiporter family WM43_04255 PF03553 Na+/H+ antiporter family WM43_04260 PF00990 Diguanylate cyclase, GGDEF domain WM43_04260 PF00563 EAL domain WM43_04260 PF03707 Bacterial signalling protein N terminal repeat WM43_04260 PF13188 PAS domain WM43_04270 PF00270 DEAD/DEAH box helicase WM43_04270 PF00271 Helicase conserved C-terminal domain WM43_04270 PF03880 DbpA RNA binding domain WM43_04275 PF03061 Thioesterase superfamily WM43_04285 PF01565 FAD binding domain WM43_04285 PF02913 FAD linked oxidases, C-terminal domain WM43_04285 PF13183 4Fe-4S dicluster domain WM43_04295 PF03741 Integral membrane protein TerC family WM43_04295 PF03471 Transporter associated domain WM43_04300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family WM43_04305 PF14765 Polyketide synthase dehydratase WM43_04305 PF08240 Alcohol dehydrogenase GroES-like domain WM43_04305 PF00698 Acyl transferase domain WM43_04305 PF00109 Beta-ketoacyl synthase, N-terminal domain WM43_04305 PF02801 Beta-ketoacyl synthase, C-terminal domain WM43_04305 PF08659 KR domain WM43_04305 PF00550 Phosphopantetheine attachment site WM43_04305 PF16197 Ketoacyl-synthetase C-terminal extension WM43_04310 PF00962 Adenosine/AMP deaminase WM43_04315 PF13344 Haloacid dehalogenase-like hydrolase WM43_04320 PF00999 Sodium/hydrogen exchanger family WM43_04320 PF02254 TrkA-N domain WM43_04330 PF00733 Asparagine synthase WM43_04330 PF13537 Glutamine amidotransferase domain WM43_04355 PF01066 CDP-alcohol phosphatidyltransferase WM43_04360 PF02151 UvrB/uvrC motif WM43_04360 PF08459 UvrC Helix-hairpin-helix N-terminal WM43_04360 PF01541 GIY-YIG catalytic domain WM43_04365 PF00196 Bacterial regulatory proteins, luxR family WM43_04365 PF00072 Response regulator receiver domain WM43_04370 PF02348 Cytidylyltransferase WM43_04375 PF03966 Trm112p-like protein WM43_04380 PF02606 Tetraacyldisaccharide-1-P 4'-kinase WM43_04385 PF00664 ABC transporter transmembrane region WM43_04385 PF00005 ABC transporter WM43_04390 PF03772 Competence protein WM43_04390 PF00753 Metallo-beta-lactamase superfamily WM43_04405 PF00155 Aminotransferase class I and II WM43_04415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_04415 PF03466 LysR substrate binding domain WM43_04420 PF04219 Protein of unknown function, DUF WM43_04425 PF03974 Ecotin WM43_04430 PF03009 Glycerophosphoryl diester phosphodiesterase family WM43_04435 PF16901 C-terminal domain of alpha-glycerophosphate oxidase WM43_04435 PF01266 FAD dependent oxidoreductase WM43_04440 PF00455 DeoR C terminal sensor domain WM43_04440 PF08220 DeoR-like helix-turn-helix domain WM43_04445 PF07690 Major Facilitator Superfamily WM43_04450 PF00230 Major intrinsic protein WM43_04455 PF02782 FGGY family of carbohydrate kinases, C-terminal domain WM43_04455 PF00370 FGGY family of carbohydrate kinases, N-terminal domain WM43_04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_04470 PF03466 LysR substrate binding domain WM43_04490 PF00248 Aldo/keto reductase family WM43_04500 PF07690 Major Facilitator Superfamily WM43_04505 PF02525 Flavodoxin-like fold WM43_04520 PF05114 Protein of unknown function (DUF692) WM43_04540 PF02322 Cytochrome bd terminal oxidase subunit II WM43_04545 PF01654 Cytochrome bd terminal oxidase subunit I WM43_04550 PF00155 Aminotransferase class I and II WM43_04550 PF00392 Bacterial regulatory proteins, gntR family WM43_04560 PF04391 Protein of unknown function (DUF533) WM43_04565 PF03061 Thioesterase superfamily WM43_04570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_04570 PF03466 LysR substrate binding domain WM43_04575 PF07690 Major Facilitator Superfamily WM43_04580 PF01479 S4 domain WM43_04580 PF00849 RNA pseudouridylate synthase WM43_04590 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WM43_04625 PF02508 Rnf-Nqr subunit, membrane protein WM43_04630 PF04060 Putative Fe-S cluster WM43_04635 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WM43_04635 PF12838 4Fe-4S dicluster domain WM43_04635 PF13375 RnfC Barrel sandwich hybrid domain WM43_04635 PF10531 SLBB domain WM43_04640 PF03116 NQR2, RnfD, RnfE family WM43_04645 PF04205 FMN-binding domain WM43_04650 PF02508 Rnf-Nqr subunit, membrane protein WM43_04655 PF10576 Iron-sulfur binding domain of endonuclease III WM43_04655 PF00633 Helix-hairpin-helix motif WM43_04655 PF00730 HhH-GPD superfamily base excision DNA repair protein WM43_04660 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WM43_04665 PF18393 MotY N-terminal domain WM43_04665 PF00691 OmpA family WM43_04700 PF01609 Transposase DDE domain WM43_04700 PF13808 DDE_Tnp_1-associated WM43_04710 PF13307 Helicase C-terminal domain WM43_04710 PF06733 DEAD_2 WM43_04720 PF00850 Histone deacetylase domain WM43_04725 PF01926 50S ribosome-binding GTPase WM43_04730 PF00245 Alkaline phosphatase WM43_04735 PF00245 Alkaline phosphatase WM43_04750 PF14760 Rnk N-terminus WM43_04750 PF01272 Transcription elongation factor, GreA/GreB, C-term WM43_04755 PF00196 Bacterial regulatory proteins, luxR family WM43_04755 PF00072 Response regulator receiver domain WM43_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_04760 PF07730 Histidine kinase WM43_04760 PF05231 MASE1 WM43_04765 PF07690 Major Facilitator Superfamily WM43_04770 PF00990 Diguanylate cyclase, GGDEF domain WM43_04770 PF08448 PAS fold WM43_04775 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_04780 PF00528 Binding-protein-dependent transport system inner membrane component WM43_04785 PF00005 ABC transporter WM43_04795 PF04116 Fatty acid hydroxylase superfamily WM43_04800 PF13520 Amino acid permease WM43_04805 PF02965 Vitamin B12 dependent methionine synthase, activation domain WM43_04805 PF02574 Homocysteine S-methyltransferase WM43_04805 PF02607 B12 binding domain WM43_04805 PF02310 B12 binding domain WM43_04805 PF00809 Pterin binding enzyme WM43_04815 PF03471 Transporter associated domain WM43_04815 PF00571 CBS domain WM43_04815 PF01595 Cyclin M transmembrane N-terminal domain WM43_04820 PF01895 PhoU domain WM43_04830 PF00528 Binding-protein-dependent transport system inner membrane component WM43_04835 PF00528 Binding-protein-dependent transport system inner membrane component WM43_04840 PF14437 MafB19-like deaminase WM43_04850 PF01274 Malate synthase WM43_04855 PF00463 Isocitrate lyase family WM43_04860 PF00308 Bacterial dnaA protein WM43_04875 PF00586 AIR synthase related protein, N-terminal domain WM43_04875 PF02769 AIR synthase related protein, C-terminal domain WM43_04880 PF00551 Formyl transferase WM43_04885 PF01784 NIF3 (NGG1p interacting factor 3) WM43_04890 PF02954 Bacterial regulatory protein, Fis family WM43_04890 PF00072 Response regulator receiver domain WM43_04890 PF00158 Sigma-54 interaction domain WM43_04895 PF00989 PAS fold WM43_04895 PF00512 His Kinase A (phospho-acceptor) domain WM43_04895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_04900 PF02954 Bacterial regulatory protein, Fis family WM43_04900 PF00072 Response regulator receiver domain WM43_04900 PF00158 Sigma-54 interaction domain WM43_04910 PF01842 ACT domain WM43_04915 PF13089 Polyphosphate kinase N-terminal domain WM43_04915 PF17941 Polyphosphate kinase C-terminal domain 1 WM43_04915 PF02503 Polyphosphate kinase middle domain WM43_04915 PF13090 Polyphosphate kinase C-terminal domain 2 WM43_04920 PF02541 Ppx/GppA phosphatase family WM43_04925 PF00571 CBS domain WM43_04925 PF01769 Divalent cation transporter WM43_04925 PF03448 MgtE intracellular N domain WM43_04930 PF00669 Bacterial flagellin N-terminal helical region WM43_04935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WM43_04935 PF07196 Flagellin hook IN motif WM43_04940 PF10135 Rod binding protein WM43_04940 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase WM43_04945 PF02119 Flagellar P-ring protein WM43_04950 PF02107 Flagellar L-ring protein WM43_04955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WM43_04955 PF00460 Flagella basal body rod protein WM43_04960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WM43_04960 PF00460 Flagella basal body rod protein WM43_04965 PF00460 Flagella basal body rod protein WM43_04965 PF07559 Flagellar basal body protein FlaE WM43_04965 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WM43_04975 PF00460 Flagella basal body rod protein WM43_04975 PF06429 Flagellar basal body rod FlgEFG protein C-terminal WM43_04980 PF00460 Flagella basal body rod protein WM43_04985 PF01739 CheR methyltransferase, SAM binding domain WM43_04985 PF03705 CheR methyltransferase, all-alpha domain WM43_04990 PF00072 Response regulator receiver domain WM43_04990 PF01584 CheW-like domain WM43_04995 PF13144 Chaperone for flagella basal body P-ring formation WM43_05010 PF12850 Calcineurin-like phosphoesterase superfamily domain WM43_05015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_05025 PF00849 RNA pseudouridylate synthase WM43_05025 PF01479 S4 domain WM43_05030 PF01966 HD domain WM43_05040 PF00923 Transaldolase/Fructose-6-phosphate aldolase WM43_05045 PF04055 Radical SAM superfamily WM43_05055 PF00455 DeoR C terminal sensor domain WM43_05055 PF08220 DeoR-like helix-turn-helix domain WM43_05060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_05085 PF00313 'Cold-shock' DNA-binding domain WM43_05090 PF02817 e3 binding domain WM43_05090 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WM43_05090 PF00364 Biotin-requiring enzyme WM43_05095 PF02780 Transketolase, C-terminal domain WM43_05095 PF02779 Transketolase, pyrimidine binding domain WM43_05100 PF00676 Dehydrogenase E1 component WM43_05110 PF00550 Phosphopantetheine attachment site WM43_05110 PF00501 AMP-binding enzyme WM43_05110 PF00668 Condensation domain WM43_05110 PF00975 Thioesterase domain WM43_05120 PF00857 Isochorismatase family WM43_05120 PF00550 Phosphopantetheine attachment site WM43_05125 PF00501 AMP-binding enzyme WM43_05125 PF13193 AMP-binding enzyme C-terminal domain WM43_05130 PF00425 chorismate binding enzyme WM43_05135 PF00593 TonB dependent receptor WM43_05135 PF07715 TonB-dependent Receptor Plug Domain WM43_05140 PF00793 DAHP synthetase I family WM43_05145 PF00356 Bacterial regulatory proteins, lacI family WM43_05150 PF14718 Soluble lytic murein transglycosylase L domain WM43_05150 PF01464 Transglycosylase SLT domain WM43_05155 PF00990 Diguanylate cyclase, GGDEF domain WM43_05155 PF03707 Bacterial signalling protein N terminal repeat WM43_05155 PF00563 EAL domain WM43_05160 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WM43_05180 PF04357 TamB, inner membrane protein subunit of TAM complex WM43_05185 PF17243 POTRA domain TamA domain 1 WM43_05185 PF07244 Surface antigen variable number repeat WM43_05185 PF01103 Surface antigen WM43_05210 PF00665 Integrase core domain WM43_05210 PF13276 HTH-like domain WM43_05215 PF01527 Transposase WM43_05225 PF01797 Transposase IS200 like WM43_05230 PF02627 Carboxymuconolactone decarboxylase family WM43_05235 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_05235 PF00403 Heavy-metal-associated domain WM43_05235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_05240 PF13416 Bacterial extracellular solute-binding protein WM43_05250 PF00005 ABC transporter WM43_05255 PF01066 CDP-alcohol phosphatidyltransferase WM43_05260 PF13406 Transglycosylase SLT domain WM43_05265 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WM43_05265 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WM43_05265 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WM43_05265 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WM43_05270 PF03925 SeqA protein C-terminal domain WM43_05270 PF17206 SeqA protein N-terminal domain WM43_05275 PF12697 Alpha/beta hydrolase family WM43_05285 PF01402 Ribbon-helix-helix protein, copG family WM43_05290 PF00258 Flavodoxin WM43_05300 PF01475 Ferric uptake regulator family WM43_05305 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain WM43_05305 PF00749 tRNA synthetases class I (E and Q), catalytic domain WM43_05310 PF03173 Putative carbohydrate binding domain WM43_05310 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain WM43_05310 PF02838 Glycosyl hydrolase family 20, domain 2 WM43_05310 PF00728 Glycosyl hydrolase family 20, catalytic domain WM43_05315 PF00367 phosphotransferase system, EIIB WM43_05315 PF02378 Phosphotransferase system, EIIC WM43_05315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WM43_05320 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase WM43_05325 PF01979 Amidohydrolase family WM43_05330 PF00480 ROK family WM43_05330 PF01047 MarR family WM43_05335 PF00884 Sulfatase WM43_05335 PF08019 Phosphoethanolamine transferase EptA/EptB WM43_05340 PF01966 HD domain WM43_05345 PF07694 5TMR of 5TMR-LYT WM43_05345 PF06580 Histidine kinase WM43_05350 PF00072 Response regulator receiver domain WM43_05350 PF04397 LytTr DNA-binding domain WM43_05355 PF02554 Carbon starvation protein CstA WM43_05360 PF11742 Protein of unknown function (DUF3302) WM43_05365 PF00529 HlyD membrane-fusion protein of T1SS WM43_05365 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_05370 PF04851 Type III restriction enzyme, res subunit WM43_05370 PF00271 Helicase conserved C-terminal domain WM43_05375 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family WM43_05380 PF00462 Glutaredoxin WM43_05385 PF03372 Endonuclease/Exonuclease/phosphatase family WM43_05395 PF03061 Thioesterase superfamily WM43_05400 PF01370 NAD dependent epimerase/dehydratase family WM43_05410 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WM43_05410 PF10371 Domain of unknown function WM43_05410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_05410 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WM43_05410 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WM43_05415 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WM43_05415 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_05415 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WM43_05425 PF03473 MOSC domain WM43_05425 PF03476 MOSC N-terminal beta barrel domain WM43_05425 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_05425 PF03473 MOSC domain WM43_05425 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_05425 PF03476 MOSC N-terminal beta barrel domain WM43_05430 PF13426 PAS domain WM43_05430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_05430 PF08447 PAS fold WM43_05435 PF01435 Peptidase family M48 WM43_05445 PF12697 Alpha/beta hydrolase family WM43_05445 PF08241 Methyltransferase domain WM43_05450 PF00155 Aminotransferase class I and II WM43_05455 PF04055 Radical SAM superfamily WM43_05455 PF06968 Biotin and Thiamin Synthesis associated domain WM43_05460 PF00202 Aminotransferase class-III WM43_05475 PF01336 OB-fold nucleic acid binding domain WM43_05475 PF00152 tRNA synthetases class II (D, K and N) WM43_05485 PF03605 Anaerobic c4-dicarboxylate membrane transporter WM43_05495 PF01546 Peptidase family M20/M25/M40 WM43_05495 PF07687 Peptidase dimerisation domain WM43_05500 PF03606 C4-dicarboxylate anaerobic carrier WM43_05510 PF03960 ArsC family WM43_05515 PF01546 Peptidase family M20/M25/M40 WM43_05515 PF07687 Peptidase dimerisation domain WM43_05520 PF02557 D-alanyl-D-alanine carboxypeptidase WM43_05525 PF03471 Transporter associated domain WM43_05525 PF02080 TrkA-C domain WM43_05525 PF00999 Sodium/hydrogen exchanger family WM43_05540 PF01810 LysE type translocator WM43_05545 PF00672 HAMP domain WM43_05545 PF12729 Four helix bundle sensory module for signal transduction WM43_05545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_05550 PF07509 Protein of unknown function (DUF1523) WM43_05565 PF01156 Inosine-uridine preferring nucleoside hydrolase WM43_05570 PF00849 RNA pseudouridylate synthase WM43_05575 PF01048 Phosphorylase superfamily WM43_05580 PF00465 Iron-containing alcohol dehydrogenase WM43_05615 PF00437 Type II/IV secretion system protein WM43_05620 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain WM43_05630 PF13629 Pilus formation protein N terminal region WM43_05630 PF00263 Bacterial type II and III secretion system protein WM43_05630 PF04972 BON domain WM43_05660 PF04355 SmpA / OmlA family WM43_05665 PF13460 NAD(P)H-binding WM43_05675 PF03099 Biotin/lipoate A/B protein ligase family WM43_05675 PF10437 Bacterial lipoate protein ligase C-terminus WM43_05685 PF12704 MacB-like periplasmic core domain WM43_05685 PF02687 FtsX-like permease family WM43_05685 PF00005 ABC transporter WM43_05690 PF12704 MacB-like periplasmic core domain WM43_05690 PF00005 ABC transporter WM43_05690 PF02687 FtsX-like permease family WM43_05695 PF00005 ABC transporter WM43_05695 PF02687 FtsX-like permease family WM43_05695 PF12704 MacB-like periplasmic core domain WM43_05700 PF00529 HlyD membrane-fusion protein of T1SS WM43_05700 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_05705 PF00873 AcrB/AcrD/AcrF family WM43_05720 PF04143 Sulphur transport WM43_05735 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_05745 PF02308 MgtC family WM43_05750 PF00356 Bacterial regulatory proteins, lacI family WM43_05750 PF13407 Periplasmic binding protein domain WM43_05755 PF00251 Glycosyl hydrolases family 32 N-terminal domain WM43_05755 PF08244 Glycosyl hydrolases family 32 C terminal WM43_05760 PF00367 phosphotransferase system, EIIB WM43_05760 PF02378 Phosphotransferase system, EIIC WM43_05765 PF00294 pfkB family carbohydrate kinase WM43_05770 PF11471 Maltoporin periplasmic N-terminal extension WM43_05770 PF02264 LamB porin WM43_05775 PF00684 DnaJ central domain WM43_05775 PF01556 DnaJ C terminal domain WM43_05775 PF00226 DnaJ domain WM43_05780 PF00012 Hsp70 protein WM43_05785 PF01025 GrpE WM43_05790 PF01513 ATP-NAD kinase WM43_05795 PF02463 RecF/RecN/SMC N terminal domain WM43_05800 PF02833 DHHA2 domain WM43_05800 PF01368 DHH family WM43_05805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_05810 PF12704 MacB-like periplasmic core domain WM43_05810 PF00005 ABC transporter WM43_05810 PF02687 FtsX-like permease family WM43_05815 PF02321 Outer membrane efflux protein WM43_05820 PF00816 H-NS histone family WM43_05830 PF01527 Transposase WM43_05835 PF13276 HTH-like domain WM43_05835 PF00665 Integrase core domain WM43_05845 PF06082 Exopolysaccharide biosynthesis protein YbjH WM43_05870 PF02706 Chain length determinant protein WM43_05875 PF01609 Transposase DDE domain WM43_05875 PF05598 Transposase domain (DUF772) WM43_05885 PF00665 Integrase core domain WM43_05900 PF16363 GDP-mannose 4,6 dehydratase WM43_05905 PF02719 Polysaccharide biosynthesis protein WM43_05910 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family WM43_05920 PF02397 Bacterial sugar transferase WM43_05930 PF02350 UDP-N-acetylglucosamine 2-epimerase WM43_05935 PF01370 NAD dependent epimerase/dehydratase family WM43_05940 PF02719 Polysaccharide biosynthesis protein WM43_05940 PF08485 Polysaccharide biosynthesis protein C-terminal WM43_05945 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase WM43_05950 PF00483 Nucleotidyl transferase WM43_05955 PF04321 RmlD substrate binding domain WM43_05960 PF16363 GDP-mannose 4,6 dehydratase WM43_05965 PF00873 AcrB/AcrD/AcrF family WM43_05970 PF00529 HlyD membrane-fusion protein of T1SS WM43_05970 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_05975 PF00440 Bacterial regulatory proteins, tetR family WM43_05975 PF08361 MAATS-type transcriptional repressor, C-terminal region WM43_05990 PF02001 Protein of unknown function DUF134 WM43_06010 PF18693 TRAM domain WM43_06010 PF00919 Uncharacterized protein family UPF0004 WM43_06010 PF04055 Radical SAM superfamily WM43_06015 PF05598 Transposase domain (DUF772) WM43_06015 PF01609 Transposase DDE domain WM43_06020 PF14821 Threonine synthase N terminus WM43_06020 PF00291 Pyridoxal-phosphate dependent enzyme WM43_06025 PF08544 GHMP kinases C terminal WM43_06025 PF00288 GHMP kinases N terminal domain WM43_06030 PF00742 Homoserine dehydrogenase WM43_06030 PF13840 ACT domain WM43_06030 PF01842 ACT domain WM43_06030 PF00696 Amino acid kinase family WM43_06030 PF03447 Homoserine dehydrogenase, NAD binding domain WM43_06035 PF00588 SpoU rRNA Methylase family WM43_06040 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) WM43_06050 PF00849 RNA pseudouridylate synthase WM43_06050 PF01479 S4 domain WM43_06055 PF04079 Segregation and condensation complex subunit ScpB WM43_06060 PF02616 Segregation and condensation protein ScpA WM43_06065 PF01300 Telomere recombination WM43_06070 PF02811 PHP domain WM43_06075 PF04715 Anthranilate synthase component I, N terminal region WM43_06075 PF00425 chorismate binding enzyme WM43_06080 PF02885 Glycosyl transferase family, helical bundle domain WM43_06080 PF00591 Glycosyl transferase family, a/b domain WM43_06080 PF00117 Glutamine amidotransferase class-I WM43_06085 PF02885 Glycosyl transferase family, helical bundle domain WM43_06085 PF00591 Glycosyl transferase family, a/b domain WM43_06090 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase WM43_06090 PF00218 Indole-3-glycerol phosphate synthase WM43_06095 PF00291 Pyridoxal-phosphate dependent enzyme WM43_06100 PF00290 Tryptophan synthase alpha chain WM43_06105 PF13276 HTH-like domain WM43_06105 PF00665 Integrase core domain WM43_06105 PF13333 Integrase core domain WM43_06115 PF04307 LexA-binding, inner membrane-associated putative hydrolase WM43_06135 PF01773 Na+ dependent nucleoside transporter N-terminus WM43_06135 PF07662 Na+ dependent nucleoside transporter C-terminus WM43_06135 PF07670 Nucleoside recognition WM43_06140 PF03960 ArsC family WM43_06145 PF01758 Sodium Bile acid symporter family WM43_06150 PF02374 Anion-transporting ATPase WM43_06155 PF06953 Arsenical resistance operon trans-acting repressor ArsD WM43_06175 PF03737 Aldolase/RraA WM43_06185 PF00486 Transcriptional regulatory protein, C terminal WM43_06185 PF00072 Response regulator receiver domain WM43_06200 PF00005 ABC transporter WM43_06200 PF00664 ABC transporter transmembrane region WM43_06205 PF00664 ABC transporter transmembrane region WM43_06205 PF00005 ABC transporter WM43_06225 PF01980 tRNA-methyltransferase O WM43_06225 PF18389 TrmO C-terminal domain WM43_06230 PF01292 Prokaryotic cytochrome b561 WM43_06240 PF00072 Response regulator receiver domain WM43_06240 PF00486 Transcriptional regulatory protein, C terminal WM43_06245 PF08918 PhoQ Sensor WM43_06245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_06265 PF13808 DDE_Tnp_1-associated WM43_06265 PF01609 Transposase DDE domain WM43_06270 PF00004 ATPase family associated with various cellular activities (AAA) WM43_06270 PF17866 AAA lid domain WM43_06290 PF01266 FAD dependent oxidoreductase WM43_06295 PF07883 Cupin domain WM43_06295 PF01381 Helix-turn-helix WM43_06300 PF00171 Aldehyde dehydrogenase family WM43_06305 PF00202 Aminotransferase class-III WM43_06310 PF00324 Amino acid permease WM43_06320 PF00324 Amino acid permease WM43_06330 PF02690 Na+/Pi-cotransporter WM43_06335 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_06335 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WM43_06345 PF04381 Putative exonuclease, RdgC WM43_06355 PF12320 Type 5 capsule protein repressor C-terminal domain WM43_06355 PF00149 Calcineurin-like phosphoesterase WM43_06360 PF13476 AAA domain WM43_06365 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase WM43_06375 PF02887 Pyruvate kinase, alpha/beta domain WM43_06375 PF00224 Pyruvate kinase, barrel domain WM43_06380 PF12795 Mechanosensitive ion channel porin domain WM43_06380 PF12794 Mechanosensitive ion channel inner membrane domain 1 WM43_06380 PF00924 Mechanosensitive ion channel WM43_06390 PF05649 Peptidase family M13 WM43_06390 PF01431 Peptidase family M13 WM43_06395 PF08448 PAS fold WM43_06395 PF00990 Diguanylate cyclase, GGDEF domain WM43_06400 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WM43_06405 PF05524 PEP-utilising enzyme, N-terminal WM43_06405 PF00391 PEP-utilising enzyme, mobile domain WM43_06405 PF02896 PEP-utilising enzyme, TIM barrel domain WM43_06410 PF00381 PTS HPr component phosphorylation site WM43_06415 PF00291 Pyridoxal-phosphate dependent enzyme WM43_06420 PF00004 ATPase family associated with various cellular activities (AAA) WM43_06420 PF17862 AAA+ lid domain WM43_06420 PF01434 Peptidase family M41 WM43_06430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal WM43_06430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III WM43_06435 PF01966 HD domain WM43_06435 PF00672 HAMP domain WM43_06440 PF13401 AAA domain WM43_06440 PF01471 Putative peptidoglycan binding domain WM43_06445 PF16537 Type II secretion system protein B WM43_06450 PF11356 Type II secretion system protein C WM43_06455 PF00263 Bacterial type II and III secretion system protein WM43_06455 PF03958 Bacterial type II/III secretion system short domain WM43_06460 PF00437 Type II/IV secretion system protein WM43_06465 PF00482 Type II secretion system (T2SS), protein F WM43_06470 PF07963 Prokaryotic N-terminal methylation motif WM43_06470 PF08334 Type II secretion system (T2SS), protein G WM43_06475 PF07963 Prokaryotic N-terminal methylation motif WM43_06475 PF12019 Type II transport protein GspH WM43_06480 PF02501 Type II secretion system (T2SS), protein I WM43_06480 PF07963 Prokaryotic N-terminal methylation motif WM43_06485 PF11612 Type II secretion system (T2SS), protein J WM43_06485 PF07963 Prokaryotic N-terminal methylation motif WM43_06490 PF03934 Type II secretion system (T2SS), protein K WM43_06495 PF05134 Type II secretion system (T2SS), protein L WM43_06495 PF12693 GspL periplasmic domain WM43_06500 PF04612 Type II secretion system (T2SS), protein M WM43_06505 PF01203 Type II secretion system (T2SS), protein N WM43_06510 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WM43_06515 PF00596 Class II Aldolase and Adducin N-terminal domain WM43_06520 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_06525 PF03611 PTS system sugar-specific permease component WM43_06540 PF01261 Xylose isomerase-like TIM barrel WM43_06545 PF00455 DeoR C terminal sensor domain WM43_06545 PF08220 DeoR-like helix-turn-helix domain WM43_06555 PF01027 Inhibitor of apoptosis-promoting Bax1 WM43_06560 PF12805 FUSC-like inner membrane protein yccS WM43_06565 PF04358 DsrC like protein WM43_06570 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WM43_06595 PF04055 Radical SAM superfamily WM43_06595 PF08497 Radical SAM N-terminal WM43_06595 PF11842 Domain of unknown function (DUF3362) WM43_06600 PF00873 AcrB/AcrD/AcrF family WM43_06605 PF00529 HlyD membrane-fusion protein of T1SS WM43_06605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_06610 PF00990 Diguanylate cyclase, GGDEF domain WM43_06610 PF17158 Membrane-associated sensor, integral membrane domain WM43_06615 PF01734 Patatin-like phospholipase WM43_06620 PF13520 Amino acid permease WM43_06635 PF01389 OmpA-like transmembrane domain WM43_06635 PF00691 OmpA family WM43_06645 PF00691 OmpA family WM43_06645 PF01389 OmpA-like transmembrane domain WM43_06650 PF01389 OmpA-like transmembrane domain WM43_06650 PF00691 OmpA family WM43_06655 PF03949 Malic enzyme, NAD binding domain WM43_06655 PF00390 Malic enzyme, N-terminal domain WM43_06660 PF12833 Helix-turn-helix domain WM43_06665 PF01554 MatE WM43_06670 PF10692 Protein of unknown function (DUF2498) WM43_06675 PF00990 Diguanylate cyclase, GGDEF domain WM43_06675 PF08448 PAS fold WM43_06680 PF00860 Permease family WM43_06690 PF01235 Sodium:alanine symporter family WM43_06695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WM43_06695 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WM43_06700 PF01699 Sodium/calcium exchanger protein WM43_06705 PF08534 Redoxin WM43_06715 PF00293 NUDIX domain WM43_06730 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WM43_06730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_06735 PF03932 CutC family WM43_06740 PF00480 ROK family WM43_06750 PF01435 Peptidase family M48 WM43_06755 PF12849 PBP superfamily domain WM43_06760 PF00512 His Kinase A (phospho-acceptor) domain WM43_06760 PF11808 Phosphate regulon sensor protein PhoR WM43_06760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_06760 PF00989 PAS fold WM43_06765 PF00486 Transcriptional regulatory protein, C terminal WM43_06765 PF00072 Response regulator receiver domain WM43_06770 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WM43_06775 PF02954 Bacterial regulatory protein, Fis family WM43_06775 PF00158 Sigma-54 interaction domain WM43_06775 PF01590 GAF domain WM43_06780 PF00171 Aldehyde dehydrogenase family WM43_06790 PF00892 EamA-like transporter family WM43_06795 PF12431 Transcriptional regulator WM43_06795 PF00072 Response regulator receiver domain WM43_06800 PF17203 Single cache domain 3 WM43_06800 PF00989 PAS fold WM43_06800 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain WM43_06800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_06805 PF00390 Malic enzyme, N-terminal domain WM43_06805 PF03949 Malic enzyme, NAD binding domain WM43_06810 PF03390 2-hydroxycarboxylate transporter family WM43_06815 PF01047 MarR family WM43_06820 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_06820 PF00529 HlyD membrane-fusion protein of T1SS WM43_06850 PF13597 Anaerobic ribonucleoside-triphosphate reductase WM43_06850 PF03477 ATP cone domain WM43_06860 PF03120 NAD-dependent DNA ligase OB-fold domain WM43_06860 PF01653 NAD-dependent DNA ligase adenylation domain WM43_06860 PF00533 BRCA1 C Terminus (BRCT) domain WM43_06860 PF12826 Helix-hairpin-helix motif WM43_06860 PF03119 NAD-dependent DNA ligase C4 zinc finger domain WM43_06865 PF04354 ZipA, C-terminal FtsZ-binding domain WM43_06870 PF06470 SMC proteins Flexible Hinge Domain WM43_06870 PF02463 RecF/RecN/SMC N terminal domain WM43_06880 PF03458 UPF0126 domain WM43_06890 PF05951 Bacterial protein of unknown function (DUF882) WM43_06895 PF01471 Putative peptidoglycan binding domain WM43_06895 PF03734 L,D-transpeptidase catalytic domain WM43_06910 PF00535 Glycosyl transferase family 2 WM43_06925 PF00128 Alpha amylase, catalytic domain WM43_06935 PF00196 Bacterial regulatory proteins, luxR family WM43_06935 PF00072 Response regulator receiver domain WM43_06955 PF00999 Sodium/hydrogen exchanger family WM43_06955 PF02080 TrkA-C domain WM43_06955 PF02254 TrkA-N domain WM43_06960 PF00990 Diguanylate cyclase, GGDEF domain WM43_06965 PF11734 TilS substrate C-terminal domain WM43_06965 PF09179 TilS substrate binding domain WM43_06965 PF01171 PP-loop family WM43_06970 PF01431 Peptidase family M13 WM43_06970 PF05649 Peptidase family M13 WM43_06985 PF01276 Orn/Lys/Arg decarboxylase, major domain WM43_06985 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain WM43_06985 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain WM43_06990 PF13520 Amino acid permease WM43_06995 PF00486 Transcriptional regulatory protein, C terminal WM43_06995 PF18500 CadC C-terminal domain 1 WM43_07000 PF13520 Amino acid permease WM43_07010 PF13808 DDE_Tnp_1-associated WM43_07010 PF01609 Transposase DDE domain WM43_07020 PF12706 Beta-lactamase superfamily domain WM43_07035 PF03466 LysR substrate binding domain WM43_07035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_07045 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WM43_07045 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_07045 PF00205 Thiamine pyrophosphate enzyme, central domain WM43_07050 PF03306 Alpha-acetolactate decarboxylase WM43_07055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_07055 PF03466 LysR substrate binding domain WM43_07060 PF00579 tRNA synthetases class I (W and Y) WM43_07065 PF01551 Peptidase family M23 WM43_07065 PF08525 Opacity-associated protein A N-terminal motif WM43_07065 PF01476 LysM domain WM43_07070 PF03702 Anhydro-N-acetylmuramic acid kinase WM43_07095 PF01042 Endoribonuclease L-PSP WM43_07105 PF01965 DJ-1/PfpI family WM43_07110 PF03466 LysR substrate binding domain WM43_07110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_07130 PF00456 Transketolase, thiamine diphosphate binding domain WM43_07130 PF02780 Transketolase, C-terminal domain WM43_07130 PF02779 Transketolase, pyrimidine binding domain WM43_07135 PF00438 S-adenosylmethionine synthetase, N-terminal domain WM43_07135 PF02772 S-adenosylmethionine synthetase, central domain WM43_07135 PF02773 S-adenosylmethionine synthetase, C-terminal domain WM43_07140 PF10263 SprT-like family WM43_07140 PF17283 SprT-like zinc ribbon domain WM43_07145 PF04231 Endonuclease I WM43_07150 PF04452 RNA methyltransferase WM43_07155 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain WM43_07155 PF02951 Prokaryotic glutathione synthetase, N-terminal domain WM43_07160 PF02622 Uncharacterized ACR, COG1678 WM43_07165 PF03652 Holliday junction resolvase WM43_07170 PF00854 POT family WM43_07175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_07175 PF03466 LysR substrate binding domain WM43_07180 PF07690 Major Facilitator Superfamily WM43_07185 PF17863 AAA lid domain WM43_07185 PF07726 ATPase family associated with various cellular activities (AAA) WM43_07195 PF01841 Transglutaminase-like superfamily WM43_07195 PF13559 Domain of unknown function (DUF4129) WM43_07195 PF11992 Domain of unknown function (DUF3488) WM43_07200 PF01235 Sodium:alanine symporter family WM43_07205 PF00923 Transaldolase/Fructose-6-phosphate aldolase WM43_07215 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit WM43_07220 PF14579 Helix-hairpin-helix motif WM43_07220 PF01336 OB-fold nucleic acid binding domain WM43_07220 PF02811 PHP domain WM43_07220 PF07733 Bacterial DNA polymerase III alpha NTPase domain WM43_07220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain WM43_07225 PF01351 Ribonuclease HII WM43_07230 PF02684 Lipid-A-disaccharide synthetase WM43_07235 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_07235 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 WM43_07240 PF07977 FabA-like domain WM43_07245 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD WM43_07245 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_07250 PF03938 Outer membrane protein (OmpH-like) WM43_07255 PF07244 Surface antigen variable number repeat WM43_07255 PF01103 Surface antigen WM43_07260 PF17820 PDZ domain WM43_07260 PF02163 Peptidase family M50 WM43_07265 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain WM43_07265 PF13288 DXP reductoisomerase C-terminal domain WM43_07265 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase WM43_07275 PF01255 Putative undecaprenyl diphosphate synthase WM43_07280 PF01765 Ribosome recycling factor WM43_07285 PF00696 Amino acid kinase family WM43_07290 PF00889 Elongation factor TS WM43_07295 PF00318 Ribosomal protein S2 WM43_07300 PF00557 Metallopeptidase family M24 WM43_07305 PF01909 Nucleotidyltransferase domain WM43_07305 PF01966 HD domain WM43_07305 PF08335 GlnD PII-uridylyltransferase WM43_07305 PF01842 ACT domain WM43_07310 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_07310 PF14602 Hexapeptide repeat of succinyl-transferase WM43_07310 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal WM43_07315 PF11944 Protein of unknown function (DUF3461) WM43_07320 PF00367 phosphotransferase system, EIIB WM43_07320 PF02378 Phosphotransferase system, EIIC WM43_07325 PF07148 Maltose operon periplasmic protein precursor (MalM) WM43_07335 PF00258 Flavodoxin WM43_07340 PF00849 RNA pseudouridylate synthase WM43_07345 PF04287 tRNA pseudouridine synthase C WM43_07370 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) WM43_07390 PF00872 Transposase, Mutator family WM43_07400 PF00239 Resolvase, N terminal domain WM43_07400 PF02796 Helix-turn-helix domain of resolvase WM43_07410 PF01527 Transposase WM43_07415 PF00665 Integrase core domain WM43_07415 PF13276 HTH-like domain WM43_07460 PF00075 RNase H WM43_07480 PF07348 Syd protein (SUKH-2) WM43_07485 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term WM43_07485 PF14489 QueF-like protein WM43_07495 PF17158 Membrane-associated sensor, integral membrane domain WM43_07495 PF00990 Diguanylate cyclase, GGDEF domain WM43_07500 PF11892 Domain of unknown function (DUF3412) WM43_07500 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases WM43_07500 PF03641 Possible lysine decarboxylase WM43_07505 PF01367 5'-3' exonuclease, C-terminal SAM fold WM43_07505 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WM43_07510 PF00180 Isocitrate/isopropylmalate dehydrogenase WM43_07510 PF18324 Hypothetical protein TT1725 WM43_07520 PF01728 FtsJ-like methyltransferase WM43_07520 PF18125 RlmM ferredoxin-like domain WM43_07525 PF04241 Protein of unknown function (DUF423) WM43_07535 PF03466 LysR substrate binding domain WM43_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_07540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_07540 PF00672 HAMP domain WM43_07545 PF11799 impB/mucB/samB family C-terminal domain WM43_07545 PF00817 impB/mucB/samB family WM43_07545 PF11798 IMS family HHH motif WM43_07555 PF01965 DJ-1/PfpI family WM43_07560 PF08546 Ketopantoate reductase PanE/ApbA C terminal WM43_07560 PF02558 Ketopantoate reductase PanE/ApbA WM43_07565 PF04461 Protein of unknown function (DUF520) WM43_07570 PF03502 Nucleoside-specific channel-forming protein, Tsx WM43_07575 PF07690 Major Facilitator Superfamily WM43_07580 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WM43_07590 PF05175 Methyltransferase small domain WM43_07595 PF01722 BolA-like protein WM43_07600 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) WM43_07600 PF11973 NQRA C-terminal domain WM43_07605 PF03116 NQR2, RnfD, RnfE family WM43_07610 PF04205 FMN-binding domain WM43_07615 PF02508 Rnf-Nqr subunit, membrane protein WM43_07620 PF02508 Rnf-Nqr subunit, membrane protein WM43_07625 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_07625 PF00970 Oxidoreductase FAD-binding domain WM43_07625 PF00175 Oxidoreductase NAD-binding domain WM43_07630 PF02424 ApbE family WM43_07675 PF00106 short chain dehydrogenase WM43_07685 PF03441 FAD binding domain of DNA photolyase WM43_07685 PF00875 DNA photolyase WM43_07690 PF13411 MerR HTH family regulatory protein WM43_07695 PF08349 Protein of unknown function (DUF1722) WM43_07710 PF06508 Queuosine biosynthesis protein QueC WM43_07725 PF01817 Chorismate mutase type II WM43_07725 PF00800 Prephenate dehydratase WM43_07755 PF09588 YqaJ-like viral recombinase domain WM43_07800 PF04002 RadC-like JAB domain WM43_07815 PF03981 Ubiquinol-cytochrome C chaperone WM43_07815 PF13099 Domain of unknown function (DUF3944) WM43_07835 PF01609 Transposase DDE domain WM43_07835 PF13808 DDE_Tnp_1-associated WM43_07855 PF02463 RecF/RecN/SMC N terminal domain WM43_07860 PF00176 SNF2 family N-terminal domain WM43_07860 PF00271 Helicase conserved C-terminal domain WM43_07875 PF13808 DDE_Tnp_1-associated WM43_07875 PF01609 Transposase DDE domain WM43_07890 PF00717 Peptidase S24-like WM43_07895 PF13438 Domain of unknown function (DUF4113) WM43_07895 PF00817 impB/mucB/samB family WM43_07895 PF11799 impB/mucB/samB family C-terminal domain WM43_07895 PF11798 IMS family HHH motif WM43_07900 PF02661 Fic/DOC family WM43_07900 PF13784 Fic/DOC family N-terminal WM43_07930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_07935 PF03573 outer membrane porin, OprD family WM43_07940 PF00106 short chain dehydrogenase WM43_07965 PF02074 Carboxypeptidase Taq (M32) metallopeptidase WM43_07995 PF00114 Pilin (bacterial filament) WM43_07995 PF07963 Prokaryotic N-terminal methylation motif WM43_08000 PF12833 Helix-turn-helix domain WM43_08000 PF02805 Metal binding domain of Ada WM43_08000 PF00730 HhH-GPD superfamily base excision DNA repair protein WM43_08000 PF06029 AlkA N-terminal domain WM43_08005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WM43_08005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WM43_08010 PF01136 Peptidase family U32 WM43_08010 PF12392 Collagenase WM43_08015 PF01810 LysE type translocator WM43_08020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_08020 PF03466 LysR substrate binding domain WM43_08030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_08030 PF00672 HAMP domain WM43_08030 PF02743 Cache domain WM43_08045 PF01584 CheW-like domain WM43_08045 PF02895 Signal transducing histidine kinase, homodimeric domain WM43_08045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_08045 PF01627 Hpt domain WM43_08045 PF07194 P2 response regulator binding domain WM43_08050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_08050 PF00672 HAMP domain WM43_08050 PF12729 Four helix bundle sensory module for signal transduction WM43_08055 PF01584 CheW-like domain WM43_08060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_08060 PF00672 HAMP domain WM43_08065 PF01739 CheR methyltransferase, SAM binding domain WM43_08065 PF03705 CheR methyltransferase, all-alpha domain WM43_08070 PF03975 CheD chemotactic sensory transduction WM43_08075 PF00072 Response regulator receiver domain WM43_08075 PF01339 CheB methylesterase WM43_08080 PF01138 3' exoribonuclease family, domain 1 WM43_08080 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain WM43_08080 PF03725 3' exoribonuclease family, domain 2 WM43_08080 PF00575 S1 RNA binding domain WM43_08080 PF00013 KH domain WM43_08085 PF00312 Ribosomal protein S15 WM43_08090 PF09157 Pseudouridine synthase II TruB, C-terminal WM43_08090 PF16198 tRNA pseudouridylate synthase B C-terminal domain WM43_08090 PF01509 TruB family pseudouridylate synthase (N terminal domain) WM43_08095 PF02033 Ribosome-binding factor A WM43_08100 PF00009 Elongation factor Tu GTP binding domain WM43_08100 PF11987 Translation-initiation factor 2 WM43_08100 PF04760 Translation initiation factor IF-2, N-terminal region WM43_08100 PF08364 Bacterial translation initiation factor IF-2 associated region WM43_08105 PF08529 NusA N-terminal domain WM43_08105 PF13184 NusA-like KH domain WM43_08105 PF00575 S1 RNA binding domain WM43_08110 PF17384 RimP C-terminal SH3 domain WM43_08110 PF02576 RimP N-terminal domain WM43_08125 PF03840 Preprotein translocase SecG subunit WM43_08130 PF00121 Triosephosphate isomerase WM43_08135 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WM43_08135 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WM43_08135 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WM43_08135 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WM43_08140 PF00809 Pterin binding enzyme WM43_08145 PF17862 AAA+ lid domain WM43_08145 PF00004 ATPase family associated with various cellular activities (AAA) WM43_08145 PF06480 FtsH Extracellular WM43_08145 PF01434 Peptidase family M41 WM43_08150 PF01728 FtsJ-like methyltransferase WM43_08155 PF01985 CRS1 / YhbY (CRM) domain WM43_08165 PF03449 Transcription elongation factor, N-terminal WM43_08165 PF01272 Transcription elongation factor, GreA/GreB, C-term WM43_08170 PF00691 OmpA family WM43_08170 PF13677 Membrane MotB of proton-channel complex MotA/MotB WM43_08175 PF01618 MotA/TolQ/ExbB proton channel family WM43_08180 PF02609 Exonuclease VII small subunit WM43_08185 PF00348 Polyprenyl synthetase WM43_08190 PF02780 Transketolase, C-terminal domain WM43_08190 PF02779 Transketolase, pyrimidine binding domain WM43_08190 PF13292 1-deoxy-D-xylulose-5-phosphate synthase WM43_08195 PF00149 Calcineurin-like phosphoesterase WM43_08195 PF02872 5'-nucleotidase, C-terminal domain WM43_08215 PF02954 Bacterial regulatory protein, Fis family WM43_08215 PF00072 Response regulator receiver domain WM43_08215 PF00158 Sigma-54 interaction domain WM43_08220 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_08220 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase WM43_08230 PF04102 SlyX WM43_08235 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_08235 PF00528 Binding-protein-dependent transport system inner membrane component WM43_08245 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_08250 PF00005 ABC transporter WM43_08250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_08255 PF04608 Phosphatidylglycerophosphatase A WM43_08260 PF00586 AIR synthase related protein, N-terminal domain WM43_08260 PF02769 AIR synthase related protein, C-terminal domain WM43_08265 PF01029 NusB family WM43_08270 PF00885 6,7-dimethyl-8-ribityllumazine synthase WM43_08275 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WM43_08275 PF00925 GTP cyclohydrolase II WM43_08280 PF00677 Lumazine binding domain WM43_08285 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region WM43_08285 PF01872 RibD C-terminal domain WM43_08290 PF03477 ATP cone domain WM43_08300 PF00464 Serine hydroxymethyltransferase WM43_08310 PF00072 Response regulator receiver domain WM43_08310 PF00672 HAMP domain WM43_08310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_08310 PF01627 Hpt domain WM43_08310 PF00512 His Kinase A (phospho-acceptor) domain WM43_08315 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WM43_08325 PF00486 Transcriptional regulatory protein, C terminal WM43_08325 PF00072 Response regulator receiver domain WM43_08330 PF03264 NapC/NirT cytochrome c family, N-terminal region WM43_08335 PF01568 Molydopterin dinucleotide binding domain WM43_08335 PF18364 Molybdopterin oxidoreductase N-terminal domain WM43_08335 PF00384 Molybdopterin oxidoreductase WM43_08340 PF02613 Nitrate reductase delta subunit WM43_08350 PF00990 Diguanylate cyclase, GGDEF domain WM43_08350 PF00563 EAL domain WM43_08350 PF03707 Bacterial signalling protein N terminal repeat WM43_08360 PF00501 AMP-binding enzyme WM43_08360 PF16177 Acetyl-coenzyme A synthetase N-terminus WM43_08360 PF13193 AMP-binding enzyme C-terminal domain WM43_08365 PF01220 Dehydroquinase class II WM43_08370 PF00364 Biotin-requiring enzyme WM43_08375 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WM43_08375 PF00289 Biotin carboxylase, N-terminal domain WM43_08375 PF02785 Biotin carboxylase C-terminal domain WM43_08380 PF06196 Protein of unknown function (DUF997) WM43_08385 PF00474 Sodium:solute symporter family WM43_08390 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 WM43_08390 PF02378 Phosphotransferase system, EIIC WM43_08390 PF00367 phosphotransferase system, EIIB WM43_08395 PF03466 LysR substrate binding domain WM43_08395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_08400 PF00107 Zinc-binding dehydrogenase WM43_08400 PF08240 Alcohol dehydrogenase GroES-like domain WM43_08410 PF14602 Hexapeptide repeat of succinyl-transferase WM43_08410 PF12464 Maltose acetyltransferase WM43_08415 PF00881 Nitroreductase family WM43_08420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family WM43_08420 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_08425 PF01343 Peptidase family S49 WM43_08430 PF03734 L,D-transpeptidase catalytic domain WM43_08430 PF17969 L,D-transpeptidase C-terminal domain WM43_08435 PF01527 Transposase WM43_08440 PF13276 HTH-like domain WM43_08440 PF13683 Integrase core domain WM43_08455 PF02472 Biopolymer transport protein ExbD/TolR WM43_08460 PF01618 MotA/TolQ/ExbB proton channel family WM43_08465 PF01618 MotA/TolQ/ExbB proton channel family WM43_08475 PF07715 TonB-dependent Receptor Plug Domain WM43_08475 PF00593 TonB dependent receptor WM43_08480 PF00528 Binding-protein-dependent transport system inner membrane component WM43_08485 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_08485 PF00528 Binding-protein-dependent transport system inner membrane component WM43_08495 PF00005 ABC transporter WM43_08495 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_08500 PF00005 ABC transporter WM43_08500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_08510 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain WM43_08510 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain WM43_08510 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain WM43_08515 PF01370 NAD dependent epimerase/dehydratase family WM43_08520 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) WM43_08530 PF01464 Transglycosylase SLT domain WM43_08545 PF12848 ABC transporter WM43_08545 PF00005 ABC transporter WM43_08555 PF00860 Permease family WM43_08560 PF00749 tRNA synthetases class I (E and Q), catalytic domain WM43_08565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_08565 PF00672 HAMP domain WM43_08575 PF00313 'Cold-shock' DNA-binding domain WM43_08615 PF00929 Exonuclease WM43_08620 PF03193 RsgA GTPase WM43_08625 PF02666 Phosphatidylserine decarboxylase WM43_08630 PF09905 DNA-binding protein VF530 WM43_08645 PF00171 Aldehyde dehydrogenase family WM43_08650 PF01472 PUA domain WM43_08650 PF00696 Amino acid kinase family WM43_08655 PF07417 Sigma factor-binding transcriptional regulator Crl WM43_08665 PF00156 Phosphoribosyl transferase domain WM43_08670 PF07687 Peptidase dimerisation domain WM43_08670 PF01546 Peptidase family M20/M25/M40 WM43_08675 PF00226 DnaJ domain WM43_08675 PF05099 Tellurite resistance protein TerB WM43_08680 PF00483 Nucleotidyl transferase WM43_08685 PF01636 Phosphotransferase enzyme family WM43_08690 PF03968 OstA-like protein WM43_08690 PF04453 LPS transport system D WM43_08695 PF00639 PPIC-type PPIASE domain WM43_08695 PF09312 SurA N-terminal domain WM43_08700 PF04166 Pyridoxal phosphate biosynthetic protein PdxA WM43_08705 PF00398 Ribosomal RNA adenine dimethylase WM43_08710 PF04379 ApaG domain WM43_08715 PF00149 Calcineurin-like phosphoesterase WM43_08730 PF00296 Luciferase-like monooxygenase WM43_08745 PF01926 50S ribosome-binding GTPase WM43_08745 PF01018 GTP1/OBG WM43_08750 PF01016 Ribosomal L27 protein WM43_08755 PF00829 Ribosomal prokaryotic L21 protein WM43_08760 PF00348 Polyprenyl synthetase WM43_08765 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) WM43_08770 PF01145 SPFH domain / Band 7 family WM43_08775 PF01145 SPFH domain / Band 7 family WM43_08775 PF12221 Bacterial membrane protein N terminal WM43_08780 PF16360 GTP-binding GTPase Middle Region WM43_08780 PF01926 50S ribosome-binding GTPase WM43_08780 PF13167 GTP-binding GTPase N-terminal WM43_08785 PF17209 Hfq protein WM43_08795 PF08676 MutL C terminal dimerisation domain WM43_08795 PF01119 DNA mismatch repair protein, C-terminal domain WM43_08800 PF01119 DNA mismatch repair protein, C-terminal domain WM43_08800 PF08676 MutL C terminal dimerisation domain WM43_08805 PF01520 N-acetylmuramoyl-L-alanine amidase WM43_08810 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE WM43_08815 PF03853 YjeF-related protein N-terminus WM43_08815 PF01256 Carbohydrate kinase WM43_08820 PF08331 Domain of unknown function (DUF1730) WM43_08825 PF00480 ROK family WM43_08835 PF00005 ABC transporter WM43_08835 PF09383 NIL domain WM43_08840 PF00528 Binding-protein-dependent transport system inner membrane component WM43_08845 PF03180 NLPA lipoprotein WM43_08850 PF02357 Transcription termination factor nusG WM43_08855 PF00672 HAMP domain WM43_08855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_08860 PF03707 Bacterial signalling protein N terminal repeat WM43_08860 PF00990 Diguanylate cyclase, GGDEF domain WM43_08860 PF00563 EAL domain WM43_08865 PF00072 Response regulator receiver domain WM43_08865 PF09456 RcsC Alpha-Beta-Loop (ABL) WM43_08865 PF00512 His Kinase A (phospho-acceptor) domain WM43_08865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_08875 PF01966 HD domain WM43_08875 PF13286 Phosphohydrolase-associated domain WM43_08880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_08880 PF00072 Response regulator receiver domain WM43_08880 PF00989 PAS fold WM43_08880 PF01627 Hpt domain WM43_08880 PF18415 Histidine kinase receptor ArcB trans-membrane domain WM43_08880 PF00512 His Kinase A (phospho-acceptor) domain WM43_08900 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) WM43_08905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_08905 PF03466 LysR substrate binding domain WM43_08915 PF01259 SAICAR synthetase WM43_08920 PF06804 NlpB/DapX lipoprotein WM43_08925 PF00701 Dihydrodipicolinate synthetase family WM43_08930 PF01842 ACT domain WM43_08935 PF00578 AhpC/TSA family WM43_08940 PF03887 YfbU domain WM43_08945 PF04217 Protein of unknown function, DUF412 WM43_08950 PF00871 Acetokinase family WM43_08955 PF01515 Phosphate acetyl/butaryl transferase WM43_08955 PF07085 DRTGG domain WM43_08965 PF00483 Nucleotidyl transferase WM43_08970 PF00854 POT family WM43_08975 PF00072 Response regulator receiver domain WM43_09005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_09010 PF02321 Outer membrane efflux protein WM43_09015 PF01207 Dihydrouridine synthase (Dus) WM43_09020 PF02954 Bacterial regulatory protein, Fis family WM43_09040 PF01546 Peptidase family M20/M25/M40 WM43_09045 PF03466 LysR substrate binding domain WM43_09045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_09050 PF01810 LysE type translocator WM43_09055 PF10369 Small subunit of acetolactate synthase WM43_09060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_09060 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WM43_09060 PF00205 Thiamine pyrophosphate enzyme, central domain WM43_09070 PF01569 PAP2 superfamily WM43_09080 PF00682 HMGL-like WM43_09080 PF08502 LeuA allosteric (dimerisation) domain WM43_09085 PF00180 Isocitrate/isopropylmalate dehydrogenase WM43_09090 PF00330 Aconitase family (aconitate hydratase) WM43_09095 PF00694 Aconitase C-terminal domain WM43_09115 PF00528 Binding-protein-dependent transport system inner membrane component WM43_09120 PF00005 ABC transporter WM43_09125 PF13638 PIN domain WM43_09125 PF02562 PhoH-like protein WM43_09135 PF02867 Ribonucleotide reductase, barrel domain WM43_09135 PF08343 Ribonucleotide reductase N-terminal WM43_09135 PF00317 Ribonucleotide reductase, all-alpha domain WM43_09165 PF00563 EAL domain WM43_09165 PF00990 Diguanylate cyclase, GGDEF domain WM43_09165 PF03707 Bacterial signalling protein N terminal repeat WM43_09175 PF00118 TCP-1/cpn60 chaperonin family WM43_09180 PF00166 Chaperonin 10 Kd subunit WM43_09195 PF04186 FxsA cytoplasmic membrane protein WM43_09200 PF10415 Fumarase C C-terminus WM43_09200 PF00206 Lyase WM43_09205 PF03605 Anaerobic c4-dicarboxylate membrane transporter WM43_09210 PF00814 Glycoprotease family WM43_09215 PF01165 Ribosomal protein S21 WM43_09220 PF09424 Yqey-like protein WM43_09225 PF01807 CHC2 zinc finger WM43_09225 PF08275 DNA primase catalytic core, N-terminal domain WM43_09225 PF08278 DNA primase DnaG DnaB-binding WM43_09225 PF10410 DnaB-helicase binding domain of primase WM43_09230 PF04539 Sigma-70 region 3 WM43_09230 PF04546 Sigma-70, non-essential region WM43_09230 PF03979 Sigma-70 factor, region 1.1 WM43_09230 PF00140 Sigma-70 factor, region 1.2 WM43_09230 PF04542 Sigma-70 region 2 WM43_09230 PF04545 Sigma-70, region 4 WM43_09270 PF14659 Phage integrase, N-terminal SAM-like domain WM43_09270 PF13356 Arm DNA-binding domain WM43_09270 PF00589 Phage integrase family WM43_09285 PF02844 Phosphoribosylglycinamide synthetase, N domain WM43_09285 PF02843 Phosphoribosylglycinamide synthetase, C domain WM43_09285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain WM43_09290 PF02142 MGS-like domain WM43_09290 PF01808 AICARFT/IMPCHase bienzyme WM43_09295 PF13411 MerR HTH family regulatory protein WM43_09300 PF03889 Alternative ribosome-rescue factor A WM43_09305 PF04055 Radical SAM superfamily WM43_09305 PF06969 HemN C-terminal domain WM43_09310 PF01725 Ham1 family WM43_09315 PF07690 Major Facilitator Superfamily WM43_09320 PF02894 Oxidoreductase family, C-terminal alpha/beta domain WM43_09320 PF01408 Oxidoreductase family, NAD-binding Rossmann fold WM43_09330 PF13302 Acetyltransferase (GNAT) domain WM43_09335 PF13302 Acetyltransferase (GNAT) domain WM43_09340 PF07504 Fungalysin/Thermolysin Propeptide Motif WM43_09340 PF03413 Peptidase propeptide and YPEB domain WM43_09340 PF01447 Thermolysin metallopeptidase, catalytic domain WM43_09340 PF02868 Thermolysin metallopeptidase, alpha-helical domain WM43_09340 PF04151 Bacterial pre-peptidase C-terminal domain WM43_09345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_09345 PF03466 LysR substrate binding domain WM43_09350 PF07690 Major Facilitator Superfamily WM43_09355 PF00583 Acetyltransferase (GNAT) family WM43_09360 PF16658 Class II release factor RF3, C-terminal domain WM43_09360 PF03144 Elongation factor Tu domain 2 WM43_09360 PF00009 Elongation factor Tu GTP binding domain WM43_09370 PF00072 Response regulator receiver domain WM43_09370 PF00990 Diguanylate cyclase, GGDEF domain WM43_09375 PF05762 VWA domain containing CoxE-like protein WM43_09380 PF07728 AAA domain (dynein-related subfamily) WM43_09380 PF17868 AAA lid domain WM43_09380 PF12592 Protein of unknown function (DUF3763) WM43_09390 PF00583 Acetyltransferase (GNAT) family WM43_09390 PF13673 Acetyltransferase (GNAT) domain WM43_09400 PF00501 AMP-binding enzyme WM43_09405 PF04262 Glutamate-cysteine ligase WM43_09410 PF00675 Insulinase (Peptidase family M16) WM43_09410 PF05193 Peptidase M16 inactive domain WM43_09415 PF09335 SNARE associated Golgi protein WM43_09420 PF00107 Zinc-binding dehydrogenase WM43_09420 PF08240 Alcohol dehydrogenase GroES-like domain WM43_09440 PF00175 Oxidoreductase NAD-binding domain WM43_09440 PF00970 Oxidoreductase FAD-binding domain WM43_09445 PF01281 Ribosomal protein L9, N-terminal domain WM43_09445 PF03948 Ribosomal protein L9, C-terminal domain WM43_09450 PF01084 Ribosomal protein S18 WM43_09455 PF01250 Ribosomal protein S6 WM43_09460 PF01566 Natural resistance-associated macrophage protein WM43_09465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WM43_09465 PF02272 DHHA1 domain WM43_09465 PF01411 tRNA synthetases class II (A) WM43_09475 PF00216 Bacterial DNA-binding protein WM43_09480 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ WM43_09485 PF07238 PilZ domain WM43_09490 PF18073 Rubredoxin metal binding domain WM43_09505 PF18429 Domain of unknown function (DUF5609) WM43_09515 PF01048 Phosphorylase superfamily WM43_09520 PF01676 Metalloenzyme superfamily WM43_09525 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain WM43_09525 PF00591 Glycosyl transferase family, a/b domain WM43_09525 PF02885 Glycosyl transferase family, helical bundle domain WM43_09530 PF01791 DeoC/LacD family aldolase WM43_09540 PF07670 Nucleoside recognition WM43_09540 PF07662 Na+ dependent nucleoside transporter C-terminus WM43_09540 PF01773 Na+ dependent nucleoside transporter N-terminus WM43_09545 PF01026 TatD related DNase WM43_09550 PF00114 Pilin (bacterial filament) WM43_09550 PF07963 Prokaryotic N-terminal methylation motif WM43_09555 PF02664 S-Ribosylhomocysteinase (LuxS) WM43_09565 PF00543 Nitrogen regulatory protein P-II WM43_09570 PF02540 NAD synthase WM43_09570 PF00795 Carbon-nitrogen hydrolase WM43_09590 PF05567 Neisseria PilC beta-propeller domain WM43_09605 PF00114 Pilin (bacterial filament) WM43_09605 PF07963 Prokaryotic N-terminal methylation motif WM43_09610 PF02401 LytB protein WM43_09615 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_09620 PF01252 Signal peptidase (SPase) II WM43_09625 PF08264 Anticodon-binding domain of tRNA WM43_09625 PF06827 Zinc finger found in FPG and IleRS WM43_09625 PF00133 tRNA synthetases class I (I, L, M and V) WM43_09630 PF01687 Riboflavin kinase WM43_09630 PF06574 FAD synthetase WM43_09635 PF03023 Lipid II flippase MurJ WM43_09640 PF01649 Ribosomal protein S20 WM43_09645 PF01022 Bacterial regulatory protein, arsR family WM43_09650 PF03466 LysR substrate binding domain WM43_09650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_09660 PF06965 Na+/H+ antiporter 1 WM43_09665 PF00303 Thymidylate synthase WM43_09670 PF01790 Prolipoprotein diacylglyceryl transferase WM43_09675 PF05524 PEP-utilising enzyme, N-terminal WM43_09675 PF00391 PEP-utilising enzyme, mobile domain WM43_09675 PF02896 PEP-utilising enzyme, TIM barrel domain WM43_09675 PF01590 GAF domain WM43_09680 PF00293 NUDIX domain WM43_09685 PF02976 DNA mismatch repair enzyme MutH WM43_09695 PF01245 Ribosomal protein L19 WM43_09700 PF01746 tRNA (Guanine-1)-methyltransferase WM43_09705 PF05239 PRC-barrel domain WM43_09705 PF01782 RimM N-terminal domain WM43_09710 PF00886 Ribosomal protein S16 WM43_09715 PF02978 Signal peptide binding domain WM43_09715 PF00448 SRP54-type protein, GTPase domain WM43_09715 PF02881 SRP54-type protein, helical bundle domain WM43_09720 PF01578 Cytochrome C assembly protein WM43_09725 PF01595 Cyclin M transmembrane N-terminal domain WM43_09725 PF03471 Transporter associated domain WM43_09725 PF00571 CBS domain WM43_09730 PF02082 Transcriptional regulator WM43_09735 PF00970 Oxidoreductase FAD-binding domain WM43_09735 PF00042 Globin WM43_09735 PF00175 Oxidoreductase NAD-binding domain WM43_09740 PF08238 Sel1 repeat WM43_09745 PF00056 lactate/malate dehydrogenase, NAD binding domain WM43_09745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain WM43_09750 PF00528 Binding-protein-dependent transport system inner membrane component WM43_09755 PF00528 Binding-protein-dependent transport system inner membrane component WM43_09760 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_09765 PF00005 ABC transporter WM43_09770 PF02863 Arginine repressor, C-terminal domain WM43_09770 PF01316 Arginine repressor, DNA binding domain WM43_09775 PF04261 Dyp-type peroxidase family WM43_09780 PF08402 TOBE domain WM43_09780 PF00005 ABC transporter WM43_09790 PF13416 Bacterial extracellular solute-binding protein WM43_09795 PF00543 Nitrogen regulatory protein P-II WM43_09800 PF00472 RF-1 domain WM43_09805 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain WM43_09805 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain WM43_09815 PF03883 Peroxide stress protein YaaA WM43_09820 PF00437 Type II/IV secretion system protein WM43_09825 PF00437 Type II/IV secretion system protein WM43_09830 PF01168 Alanine racemase, N-terminal domain WM43_09835 PF14748 Pyrroline-5-carboxylate reductase dimerisation WM43_09835 PF03807 NADP oxidoreductase coenzyme F420-dependent WM43_09840 PF02325 YGGT family WM43_09845 PF02594 Uncharacterised ACR, YggU family COG1872 WM43_09855 PF07670 Nucleoside recognition WM43_09855 PF07662 Na+ dependent nucleoside transporter C-terminus WM43_09855 PF01773 Na+ dependent nucleoside transporter N-terminus WM43_09860 PF03466 LysR substrate binding domain WM43_09860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_09865 PF00255 Glutathione peroxidase WM43_09875 PF02595 Glycerate kinase family WM43_09880 PF02447 GntP family permease WM43_09885 PF17853 GGDEF-like domain WM43_09885 PF13556 PucR C-terminal helix-turn-helix domain WM43_09885 PF05651 Putative sugar diacid recognition WM43_09890 PF06062 Uncharacterised protein family (UPF0231) WM43_09910 PF03372 Endonuclease/Exonuclease/phosphatase family WM43_09920 PF00271 Helicase conserved C-terminal domain WM43_09920 PF00270 DEAD/DEAH box helicase WM43_09930 PF08534 Redoxin WM43_09935 PF00403 Heavy-metal-associated domain WM43_09940 PF18494 Pullulanase Ins domain WM43_09940 PF03714 Bacterial pullanase-associated domain WM43_09940 PF11852 Domain of unknown function (DUF3372) WM43_09940 PF17967 Pullulanase N2 domain WM43_09940 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) WM43_09955 PF02583 Metal-sensitive transcriptional repressor WM43_09960 PF00155 Aminotransferase class I and II WM43_09965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_09965 PF03466 LysR substrate binding domain WM43_09975 PF04055 Radical SAM superfamily WM43_09980 PF11230 Protein of unknown function (DUF3029) WM43_10005 PF00970 Oxidoreductase FAD-binding domain WM43_10005 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_10005 PF00175 Oxidoreductase NAD-binding domain WM43_10020 PF00672 HAMP domain WM43_10020 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_10020 PF17200 Single Cache domain 2 WM43_10025 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading WM43_10025 PF18416 N-acetylglucosamine binding protein domain 2 WM43_10030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_10030 PF03466 LysR substrate binding domain WM43_10035 PF00005 ABC transporter WM43_10035 PF12857 TOBE-like domain WM43_10040 PF00528 Binding-protein-dependent transport system inner membrane component WM43_10045 PF00528 Binding-protein-dependent transport system inner membrane component WM43_10060 PF13194 Domain of unknown function (DUF4010) WM43_10065 PF12464 Maltose acetyltransferase WM43_10065 PF14602 Hexapeptide repeat of succinyl-transferase WM43_10080 PF13419 Haloacid dehalogenase-like hydrolase WM43_10085 PF00293 NUDIX domain WM43_10090 PF00459 Inositol monophosphatase family WM43_10095 PF03222 Tryptophan/tyrosine permease family WM43_10100 PF01588 Putative tRNA binding domain WM43_10105 PF12833 Helix-turn-helix domain WM43_10105 PF02311 AraC-like ligand binding domain WM43_10110 PF01340 Met Apo-repressor, MetJ WM43_10115 PF01053 Cys/Met metabolism PLP-dependent enzyme WM43_10120 PF00742 Homoserine dehydrogenase WM43_10120 PF03447 Homoserine dehydrogenase, NAD binding domain WM43_10120 PF00696 Amino acid kinase family WM43_10125 PF01384 Phosphate transporter family WM43_10130 PF01865 Protein of unknown function DUF47 WM43_10140 PF00701 Dihydrodipicolinate synthetase family WM43_10145 PF08468 Methyltransferase small domain N-terminal WM43_10145 PF05175 Methyltransferase small domain WM43_10150 PF00483 Nucleotidyl transferase WM43_10155 PF00534 Glycosyl transferases group 1 WM43_10155 PF08323 Starch synthase catalytic domain WM43_10195 PF03553 Na+/H+ antiporter family WM43_10200 PF01521 Iron-sulphur cluster biosynthesis WM43_10210 PF00654 Voltage gated chloride channel WM43_10215 PF00202 Aminotransferase class-III WM43_10230 PF13462 Thioredoxin WM43_10230 PF06965 Na+/H+ antiporter 1 WM43_10260 PF18337 RapA N-terminal Tudor like domain WM43_10260 PF18339 RapA N-terminal Tudor like domain 1 WM43_10260 PF00176 SNF2 family N-terminal domain WM43_10260 PF12137 RNA polymerase recycling family C-terminal WM43_10260 PF00271 Helicase conserved C-terminal domain WM43_10265 PF00849 RNA pseudouridylate synthase WM43_10275 PF12464 Maltose acetyltransferase WM43_10275 PF14602 Hexapeptide repeat of succinyl-transferase WM43_10280 PF00128 Alpha amylase, catalytic domain WM43_10280 PF11941 Domain of unknown function (DUF3459) WM43_10285 PF02378 Phosphotransferase system, EIIC WM43_10285 PF00367 phosphotransferase system, EIIB WM43_10290 PF00356 Bacterial regulatory proteins, lacI family WM43_10305 PF17763 Glutaminase/Asparaginase C-terminal domain WM43_10305 PF00710 Asparaginase, N-terminal WM43_10310 PF03471 Transporter associated domain WM43_10310 PF00571 CBS domain WM43_10310 PF01595 Cyclin M transmembrane N-terminal domain WM43_10315 PF09335 SNARE associated Golgi protein WM43_10320 PF00768 D-alanyl-D-alanine carboxypeptidase WM43_10355 PF13840 ACT domain WM43_10355 PF01842 ACT domain WM43_10355 PF00696 Amino acid kinase family WM43_10360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain WM43_10360 PF02272 DHHA1 domain WM43_10360 PF01411 tRNA synthetases class II (A) WM43_10365 PF02631 RecX family WM43_10370 PF00154 recA bacterial DNA recombination protein WM43_10375 PF02464 Competence-damaged protein WM43_10380 PF05188 MutS domain II WM43_10380 PF05192 MutS domain III WM43_10380 PF05190 MutS family domain IV WM43_10380 PF01624 MutS domain I WM43_10380 PF00488 MutS domain V WM43_10385 PF01734 Patatin-like phospholipase WM43_10395 PF04172 LrgB-like family WM43_10400 PF03788 LrgA family WM43_10405 PF03466 LysR substrate binding domain WM43_10405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_10415 PF04073 Aminoacyl-tRNA editing domain WM43_10435 PF04055 Radical SAM superfamily WM43_10435 PF06968 Biotin and Thiamin Synthesis associated domain WM43_10440 PF05690 Thiazole biosynthesis protein ThiG WM43_10450 PF00899 ThiF family WM43_10455 PF02581 Thiamine monophosphate synthase WM43_10460 PF01964 Radical SAM ThiC family WM43_10460 PF13667 ThiC-associated domain WM43_10465 PF01117 Aerolysin toxin WM43_10465 PF03440 Aerolysin/Pertussis toxin (APT) domain WM43_10480 PF00072 Response regulator receiver domain WM43_10480 PF00486 Transcriptional regulatory protein, C terminal WM43_10490 PF08443 RimK-like ATP-grasp domain WM43_10490 PF18030 RimK PreATP-grasp domain WM43_10495 PF02965 Vitamin B12 dependent methionine synthase, activation domain WM43_10495 PF02574 Homocysteine S-methyltransferase WM43_10495 PF00809 Pterin binding enzyme WM43_10495 PF02607 B12 binding domain WM43_10495 PF02310 B12 binding domain WM43_10500 PF00999 Sodium/hydrogen exchanger family WM43_10520 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) WM43_10530 PF07690 Major Facilitator Superfamily WM43_10535 PF01914 MarC family integral membrane protein WM43_10545 PF01523 Putative modulator of DNA gyrase WM43_10550 PF00795 Carbon-nitrogen hydrolase WM43_10565 PF13502 AsmA-like C-terminal region WM43_10565 PF13116 Protein of unknown function WM43_10570 PF10150 Ribonuclease E/G family WM43_10570 PF00575 S1 RNA binding domain WM43_10575 PF02545 Maf-like protein WM43_10580 PF04093 rod shape-determining protein MreD WM43_10585 PF04085 rod shape-determining protein MreC WM43_10615 PF07963 Prokaryotic N-terminal methylation motif WM43_10615 PF14245 Type IV pilin PilA WM43_10620 PF07963 Prokaryotic N-terminal methylation motif WM43_10620 PF00114 Pilin (bacterial filament) WM43_10635 PF00482 Type II secretion system (T2SS), protein F WM43_10640 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain WM43_10640 PF00437 Type II/IV secretion system protein WM43_10655 PF03958 Bacterial type II/III secretion system short domain WM43_10655 PF00263 Bacterial type II and III secretion system protein WM43_10685 PF00563 EAL domain WM43_10685 PF00990 Diguanylate cyclase, GGDEF domain WM43_10685 PF17157 Gammaproteobacterial periplasmic sensor domain WM43_10705 PF01699 Sodium/calcium exchanger protein WM43_10710 PF00221 Aromatic amino acid lyase WM43_10715 PF17391 Urocanase N-terminal domain WM43_10715 PF17392 Urocanase C-terminal domain WM43_10715 PF01175 Urocanase Rossmann-like domain WM43_10720 PF00491 Arginase family WM43_10725 PF01979 Amidohydrolase family WM43_10730 PF00392 Bacterial regulatory proteins, gntR family WM43_10730 PF07702 UTRA domain WM43_10735 PF00484 Carbonic anhydrase WM43_10740 PF00140 Sigma-70 factor, region 1.2 WM43_10740 PF04542 Sigma-70 region 2 WM43_10740 PF04545 Sigma-70, region 4 WM43_10745 PF18075 FtsX extracellular domain WM43_10750 PF00005 ABC transporter WM43_10755 PF02881 SRP54-type protein, helical bundle domain WM43_10755 PF00448 SRP54-type protein, GTPase domain WM43_10780 PF00999 Sodium/hydrogen exchanger family WM43_10780 PF02254 TrkA-N domain WM43_10785 PF02525 Flavodoxin-like fold WM43_10790 PF03466 LysR substrate binding domain WM43_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_10795 PF00106 short chain dehydrogenase WM43_10810 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain WM43_10810 PF00326 Prolyl oligopeptidase family WM43_10825 PF13091 PLD-like domain WM43_10830 PF01464 Transglycosylase SLT domain WM43_10830 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_10840 PF02416 mttA/Hcf106 family WM43_10845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_10845 PF03466 LysR substrate binding domain WM43_10850 PF01914 MarC family integral membrane protein WM43_10855 PF10678 Protein of unknown function (DUF2492) WM43_10860 PF00375 Sodium:dicarboxylate symporter family WM43_10870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_10870 PF03466 LysR substrate binding domain WM43_10875 PF13533 Biotin-lipoyl like WM43_10880 PF07690 Major Facilitator Superfamily WM43_10885 PF07947 YhhN family WM43_10895 PF00440 Bacterial regulatory proteins, tetR family WM43_10900 PF07226 Protein of unknown function (DUF1422) WM43_10935 PF03144 Elongation factor Tu domain 2 WM43_10935 PF00009 Elongation factor Tu GTP binding domain WM43_10935 PF03143 Elongation factor Tu C-terminal domain WM43_10940 PF14492 Elongation Factor G, domain II WM43_10940 PF03764 Elongation factor G, domain IV WM43_10940 PF00009 Elongation factor Tu GTP binding domain WM43_10940 PF03144 Elongation factor Tu domain 2 WM43_10940 PF00679 Elongation factor G C-terminus WM43_10945 PF00177 Ribosomal protein S7p/S5e WM43_10950 PF00164 Ribosomal protein S12/S23 WM43_10955 PF04077 DsrH like protein WM43_10960 PF02635 DsrE/DsrF-like family WM43_10965 PF02635 DsrE/DsrF-like family WM43_10970 PF01042 Endoribonuclease L-PSP WM43_10975 PF13309 HTH domain WM43_10975 PF08348 YheO-like PAS domain WM43_10980 PF04983 RNA polymerase Rpb1, domain 3 WM43_10980 PF00623 RNA polymerase Rpb1, domain 2 WM43_10980 PF04997 RNA polymerase Rpb1, domain 1 WM43_10980 PF04998 RNA polymerase Rpb1, domain 5 WM43_10980 PF05000 RNA polymerase Rpb1, domain 4 WM43_10985 PF10385 RNA polymerase beta subunit external 1 domain WM43_10985 PF00562 RNA polymerase Rpb2, domain 6 WM43_10985 PF04565 RNA polymerase Rpb2, domain 3 WM43_10985 PF04560 RNA polymerase Rpb2, domain 7 WM43_10985 PF04561 RNA polymerase Rpb2, domain 2 WM43_10985 PF04563 RNA polymerase beta subunit WM43_10990 PF00542 Ribosomal protein L7/L12 C-terminal domain WM43_10990 PF16320 Ribosomal protein L7/L12 dimerisation domain WM43_10995 PF00466 Ribosomal protein L10 WM43_11000 PF00687 Ribosomal protein L1p/L10e family WM43_11005 PF03946 Ribosomal protein L11, N-terminal domain WM43_11005 PF00298 Ribosomal protein L11, RNA binding domain WM43_11010 PF00467 KOW motif WM43_11010 PF02357 Transcription termination factor nusG WM43_11015 PF00584 SecE/Sec61-gamma subunits of protein translocation complex WM43_11025 PF00009 Elongation factor Tu GTP binding domain WM43_11025 PF03143 Elongation factor Tu C-terminal domain WM43_11025 PF03144 Elongation factor Tu domain 2 WM43_11040 PF00485 Phosphoribulokinase / Uridine kinase family WM43_11045 PF03099 Biotin/lipoate A/B protein ligase family WM43_11045 PF02237 Biotin protein ligase C terminal domain WM43_11045 PF08279 HTH domain WM43_11050 PF01565 FAD binding domain WM43_11050 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain WM43_11055 PF02254 TrkA-N domain WM43_11055 PF02080 TrkA-C domain WM43_11060 PF02386 Cation transport protein WM43_11080 PF01131 DNA topoisomerase WM43_11080 PF01751 Toprim domain WM43_11090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_11090 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_11090 PF00512 His Kinase A (phospho-acceptor) domain WM43_11095 PF03264 NapC/NirT cytochrome c family, N-terminal region WM43_11100 PF18364 Molybdopterin oxidoreductase N-terminal domain WM43_11100 PF00384 Molybdopterin oxidoreductase WM43_11100 PF01568 Molydopterin dinucleotide binding domain WM43_11110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_11110 PF08918 PhoQ Sensor WM43_11115 PF00072 Response regulator receiver domain WM43_11115 PF00486 Transcriptional regulatory protein, C terminal WM43_11130 PF01794 Ferric reductase like transmembrane component WM43_11135 PF00174 Oxidoreductase molybdopterin binding domain WM43_11140 PF06496 Protein of unknown function (DUF1097) WM43_11145 PF00158 Sigma-54 interaction domain WM43_11145 PF00072 Response regulator receiver domain WM43_11155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_11155 PF00512 His Kinase A (phospho-acceptor) domain WM43_11170 PF00478 IMP dehydrogenase / GMP reductase domain WM43_11170 PF00571 CBS domain WM43_11175 PF10063 Uncharacterized integral membrane protein (DUF2301) WM43_11185 PF01037 Lrp/AsnC ligand binding domain WM43_11190 PF03590 Aspartate-ammonia ligase WM43_11195 PF17871 AAA lid domain WM43_11195 PF00004 ATPase family associated with various cellular activities (AAA) WM43_11195 PF07724 AAA domain (Cdc48 subfamily) WM43_11195 PF02861 Clp amino terminal domain, pathogenicity island component WM43_11195 PF10431 C-terminal, D2-small domain, of ClpB protein WM43_11205 PF00849 RNA pseudouridylate synthase WM43_11205 PF01479 S4 domain WM43_11210 PF13525 Outer membrane lipoprotein WM43_11215 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_11215 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_11220 PF00375 Sodium:dicarboxylate symporter family WM43_11225 PF03313 Serine dehydratase alpha chain WM43_11230 PF13309 HTH domain WM43_11230 PF08348 YheO-like PAS domain WM43_11240 PF02233 NAD(P) transhydrogenase beta subunit WM43_11245 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch WM43_11245 PF01262 Alanine dehydrogenase/PNT, C-terminal domain WM43_11245 PF05222 Alanine dehydrogenase/PNT, N-terminal domain WM43_11250 PF00465 Iron-containing alcohol dehydrogenase WM43_11255 PF12833 Helix-turn-helix domain WM43_11255 PF06719 AraC-type transcriptional regulator N-terminus WM43_11260 PF08212 Lipocalin-like domain WM43_11265 PF02743 Cache domain WM43_11265 PF00672 HAMP domain WM43_11265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_11275 PF03466 LysR substrate binding domain WM43_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_11290 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WM43_11290 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WM43_11295 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain WM43_11295 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain WM43_11300 PF01316 Arginine repressor, DNA binding domain WM43_11300 PF02863 Arginine repressor, C-terminal domain WM43_11305 PF03606 C4-dicarboxylate anaerobic carrier WM43_11310 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WM43_11310 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WM43_11315 PF00696 Amino acid kinase family WM43_11335 PF04055 Radical SAM superfamily WM43_11335 PF06969 HemN C-terminal domain WM43_11340 PF10675 Protein of unknown function (DUF2489) WM43_11345 PF04220 Der GTPase activator (YihI) WM43_11355 PF00034 Cytochrome c WM43_11360 PF01926 50S ribosome-binding GTPase WM43_11375 PF08501 Shikimate dehydrogenase substrate binding domain WM43_11375 PF01488 Shikimate / quinate 5-dehydrogenase WM43_11375 PF18317 Shikimate 5'-dehydrogenase C-terminal domain WM43_11380 PF01218 Coproporphyrinogen III oxidase WM43_11385 PF01300 Telomere recombination WM43_11390 PF00731 AIR carboxylase WM43_11395 PF01396 Topoisomerase DNA binding C4 zinc finger WM43_11400 PF04361 Protein of unknown function (DUF494) WM43_11405 PF02481 DNA recombination-mediator protein A WM43_11405 PF17782 DprA winged helix domain WM43_11410 PF01476 LysM domain WM43_11415 PF01327 Polypeptide deformylase WM43_11420 PF00551 Formyl transferase WM43_11420 PF02911 Formyl transferase, C-terminal domain WM43_11425 PF01189 16S rRNA methyltransferase RsmB/F WM43_11425 PF01029 NusB family WM43_11430 PF02254 TrkA-N domain WM43_11430 PF02080 TrkA-C domain WM43_11435 PF02386 Cation transport protein WM43_11445 PF00120 Glutamine synthetase, catalytic domain WM43_11445 PF03951 Glutamine synthetase, beta-Grasp domain WM43_11455 PF00989 PAS fold WM43_11455 PF00512 His Kinase A (phospho-acceptor) domain WM43_11455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_11460 PF00072 Response regulator receiver domain WM43_11460 PF00158 Sigma-54 interaction domain WM43_11460 PF02954 Bacterial regulatory protein, Fis family WM43_11465 PF00962 Adenosine/AMP deaminase WM43_11470 PF02646 RmuC family WM43_11485 PF02082 Transcriptional regulator WM43_11490 PF00294 pfkB family carbohydrate kinase WM43_11495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_11495 PF03466 LysR substrate binding domain WM43_11500 PF02540 NAD synthase WM43_11500 PF00117 Glutamine amidotransferase class-I WM43_11500 PF00958 GMP synthase C terminal domain WM43_11505 PF00171 Aldehyde dehydrogenase family WM43_11510 PF00202 Aminotransferase class-III WM43_11515 PF01381 Helix-turn-helix WM43_11515 PF07883 Cupin domain WM43_11520 PF00171 Aldehyde dehydrogenase family WM43_11525 PF00892 EamA-like transporter family WM43_11535 PF04143 Sulphur transport WM43_11540 PF01389 OmpA-like transmembrane domain WM43_11540 PF00691 OmpA family WM43_11545 PF00585 C-terminal regulatory domain of Threonine dehydratase WM43_11545 PF00291 Pyridoxal-phosphate dependent enzyme WM43_11550 PF00920 Dehydratase family WM43_11555 PF01063 Amino-transferase class IV WM43_11565 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_11565 PF00205 Thiamine pyrophosphate enzyme, central domain WM43_11565 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WM43_11570 PF13335 Magnesium chelatase, subunit ChlI C-terminal WM43_11570 PF01078 Magnesium chelatase, subunit ChlI WM43_11575 PF01553 Acyltransferase WM43_11580 PF01553 Acyltransferase WM43_11585 PF04463 Protein of unknown function (DUF523) WM43_11595 PF00857 Isochorismatase family WM43_11600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family WM43_11600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain WM43_11605 PF01323 DSBA-like thioredoxin domain WM43_11610 PF01636 Phosphotransferase enzyme family WM43_11615 PF13746 4Fe-4S dicluster domain WM43_11615 PF12801 4Fe-4S binding domain WM43_11615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase WM43_11620 PF06288 Protein of unknown function (DUF1040) WM43_11625 PF00990 Diguanylate cyclase, GGDEF domain WM43_11625 PF01590 GAF domain WM43_11625 PF00563 EAL domain WM43_11625 PF00360 Phytochrome region WM43_11630 PF13411 MerR HTH family regulatory protein WM43_11635 PF00403 Heavy-metal-associated domain WM43_11640 PF00156 Phosphoribosyl transferase domain WM43_11645 PF01138 3' exoribonuclease family, domain 1 WM43_11645 PF03725 3' exoribonuclease family, domain 2 WM43_11650 PF08340 Domain of unknown function (DUF1732) WM43_11650 PF03755 YicC-like family, N-terminal region WM43_11655 PF03466 LysR substrate binding domain WM43_11655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_11660 PF00107 Zinc-binding dehydrogenase WM43_11660 PF08240 Alcohol dehydrogenase GroES-like domain WM43_11665 PF00756 Putative esterase WM43_11670 PF03466 LysR substrate binding domain WM43_11670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_11710 PF12867 DinB superfamily WM43_11710 PF03781 Sulfatase-modifying factor enzyme 1 WM43_11715 PF13593 SBF-like CPA transporter family (DUF4137) WM43_11720 PF13520 Amino acid permease WM43_11725 PF01588 Putative tRNA binding domain WM43_11730 PF13520 Amino acid permease WM43_11735 PF04074 YhcH/YjgK/YiaL WM43_11740 PF00703 Glycosyl hydrolases family 2 WM43_11740 PF16353 Domain of unknown function(DUF4981) WM43_11740 PF02929 Beta galactosidase small chain WM43_11740 PF02836 Glycosyl hydrolases family 2, TIM barrel domain WM43_11740 PF02837 Glycosyl hydrolases family 2, sugar binding domain WM43_11745 PF00356 Bacterial regulatory proteins, lacI family WM43_11780 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_11785 PF01367 5'-3' exonuclease, C-terminal SAM fold WM43_11785 PF01612 3'-5' exonuclease WM43_11785 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain WM43_11785 PF00476 DNA polymerase family A WM43_11795 PF06005 Cell division protein ZapB WM43_11805 PF06426 Serine acetyltransferase, N-terminal WM43_11805 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_11810 PF16916 Dimerisation domain of Zinc Transporter WM43_11810 PF01545 Cation efflux family WM43_11815 PF00486 Transcriptional regulatory protein, C terminal WM43_11815 PF00072 Response regulator receiver domain WM43_11820 PF00672 HAMP domain WM43_11820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_11820 PF00512 His Kinase A (phospho-acceptor) domain WM43_11820 PF16527 Two-component sensor protein CpxA, periplasmic domain WM43_11825 PF00588 SpoU rRNA Methylase family WM43_11830 PF01554 MatE WM43_11835 PF02630 SCO1/SenC WM43_11845 PF01726 LexA DNA binding domain WM43_11845 PF00717 Peptidase S24-like WM43_11850 PF01553 Acyltransferase WM43_11855 PF01040 UbiA prenyltransferase family WM43_11860 PF04345 Chorismate lyase WM43_11880 PF08240 Alcohol dehydrogenase GroES-like domain WM43_11880 PF00107 Zinc-binding dehydrogenase WM43_11885 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WM43_11885 PF00356 Bacterial regulatory proteins, lacI family WM43_11890 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_11900 PF03611 PTS system sugar-specific permease component WM43_11905 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) WM43_11910 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WM43_11915 PF00535 Glycosyl transferase family 2 WM43_11920 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WM43_11925 PF01467 Cytidylyltransferase-like WM43_11930 PF04393 Protein of unknown function (DUF535) WM43_11935 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain WM43_11935 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain WM43_11935 PF06827 Zinc finger found in FPG and IleRS WM43_11945 PF00471 Ribosomal protein L33 WM43_11950 PF00830 Ribosomal L28 family WM43_11955 PF04002 RadC-like JAB domain WM43_11960 PF02441 Flavoprotein WM43_11960 PF04127 DNA / pantothenate metabolism flavoprotein WM43_11965 PF00692 dUTPase WM43_11970 PF00440 Bacterial regulatory proteins, tetR family WM43_11975 PF05552 Conserved TM helix WM43_11975 PF00924 Mechanosensitive ion channel WM43_11980 PF00342 Phosphoglucose isomerase WM43_11985 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain WM43_11985 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain WM43_11990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_11990 PF03466 LysR substrate binding domain WM43_12005 PF13607 Succinyl-CoA ligase like flavodoxin domain WM43_12005 PF13380 CoA binding domain WM43_12005 PF00583 Acetyltransferase (GNAT) family WM43_12035 PF12724 Flavodoxin domain WM43_12040 PF02386 Cation transport protein WM43_12045 PF09186 Domain of unknown function (DUF1949) WM43_12045 PF01205 Uncharacterized protein family UPF0029 WM43_12050 PF00557 Metallopeptidase family M24 WM43_12055 PF13193 AMP-binding enzyme C-terminal domain WM43_12055 PF00501 AMP-binding enzyme WM43_12060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain WM43_12060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain WM43_12060 PF00378 Enoyl-CoA hydratase/isomerase WM43_12065 PF00108 Thiolase, N-terminal domain WM43_12065 PF02803 Thiolase, C-terminal domain WM43_12070 PF00072 Response regulator receiver domain WM43_12070 PF00486 Transcriptional regulatory protein, C terminal WM43_12075 PF00672 HAMP domain WM43_12075 PF00512 His Kinase A (phospho-acceptor) domain WM43_12075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12080 PF01547 Bacterial extracellular solute-binding protein WM43_12090 PF01206 Sulfurtransferase TusA WM43_12095 PF01042 Endoribonuclease L-PSP WM43_12100 PF13488 Glycine zipper WM43_12100 PF00691 OmpA family WM43_12105 PF03352 Methyladenine glycosylase WM43_12110 PF02091 Glycyl-tRNA synthetase alpha subunit WM43_12115 PF05746 DALR anticodon binding domain WM43_12115 PF02092 Glycyl-tRNA synthetase beta subunit WM43_12125 PF00563 EAL domain WM43_12125 PF12792 CSS motif domain associated with EAL WM43_12135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_12135 PF00672 HAMP domain WM43_12135 PF17200 Single Cache domain 2 WM43_12140 PF07702 UTRA domain WM43_12140 PF00392 Bacterial regulatory proteins, gntR family WM43_12145 PF00367 phosphotransferase system, EIIB WM43_12145 PF02378 Phosphotransferase system, EIIC WM43_12150 PF02056 Family 4 glycosyl hydrolase WM43_12150 PF11975 Family 4 glycosyl hydrolase C-terminal domain WM43_12155 PF00356 Bacterial regulatory proteins, lacI family WM43_12160 PF13458 Periplasmic binding protein WM43_12165 PF02653 Branched-chain amino acid transport system / permease component WM43_12170 PF11862 Domain of unknown function (DUF3382) WM43_12170 PF02653 Branched-chain amino acid transport system / permease component WM43_12175 PF00005 ABC transporter WM43_12175 PF12399 Branched-chain amino acid ATP-binding cassette transporter WM43_12180 PF00005 ABC transporter WM43_12185 PF00581 Rhodanese-like domain WM43_12190 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease WM43_12190 PF01694 Rhomboid family WM43_12195 PF12262 Bacterial virulence factor lipase N-terminal WM43_12200 PF04380 Membrane fusogenic activity WM43_12205 PF00563 EAL domain WM43_12205 PF08447 PAS fold WM43_12205 PF00990 Diguanylate cyclase, GGDEF domain WM43_12205 PF08448 PAS fold WM43_12210 PF00175 Oxidoreductase NAD-binding domain WM43_12215 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase WM43_12225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WM43_12225 PF07497 Rho termination factor, RNA-binding domain WM43_12225 PF07498 Rho termination factor, N-terminal domain WM43_12230 PF00085 Thioredoxin WM43_12235 PF00270 DEAD/DEAH box helicase WM43_12235 PF00271 Helicase conserved C-terminal domain WM43_12240 PF02541 Ppx/GppA phosphatase family WM43_12250 PF04445 Putative SAM-dependent methyltransferase WM43_12255 PF00563 EAL domain WM43_12255 PF03707 Bacterial signalling protein N terminal repeat WM43_12255 PF00990 Diguanylate cyclase, GGDEF domain WM43_12260 PF01432 Peptidase family M3 WM43_12265 PF00704 Glycosyl hydrolases family 18 WM43_12270 PF18416 N-acetylglucosamine binding protein domain 2 WM43_12270 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading WM43_12275 PF00490 Delta-aminolevulinic acid dehydratase WM43_12280 PF01026 TatD related DNase WM43_12285 PF00902 Sec-independent protein translocase protein (TatC) WM43_12290 PF02416 mttA/Hcf106 family WM43_12295 PF02416 mttA/Hcf106 family WM43_12300 PF03109 ABC1 family WM43_12305 PF02036 SCP-2 sterol transfer family WM43_12310 PF01209 ubiE/COQ5 methyltransferase family WM43_12315 PF02537 CrcB-like protein, Camphor Resistance (CrcB) WM43_12320 PF07969 Amidohydrolase family WM43_12325 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin WM43_12365 PF03544 Gram-negative bacterial TonB protein C-terminal WM43_12370 PF02472 Biopolymer transport protein ExbD/TolR WM43_12375 PF01618 MotA/TolQ/ExbB proton channel family WM43_12380 PF01618 MotA/TolQ/ExbB proton channel family WM43_12390 PF03472 Autoinducer binding domain WM43_12390 PF00196 Bacterial regulatory proteins, luxR family WM43_12395 PF01380 SIS domain WM43_12400 PF08220 DeoR-like helix-turn-helix domain WM43_12400 PF00455 DeoR C terminal sensor domain WM43_12405 PF00486 Transcriptional regulatory protein, C terminal WM43_12405 PF00072 Response regulator receiver domain WM43_12410 PF00512 His Kinase A (phospho-acceptor) domain WM43_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12410 PF00672 HAMP domain WM43_12415 PF00905 Penicillin binding protein transpeptidase domain WM43_12425 PF06123 Inner membrane protein CreD WM43_12440 PF00534 Glycosyl transferases group 1 WM43_12440 PF13439 Glycosyltransferase Family 4 WM43_12470 PF13807 G-rich domain on putative tyrosine kinase WM43_12470 PF13614 AAA domain WM43_12470 PF02706 Chain length determinant protein WM43_12485 PF02397 Bacterial sugar transferase WM43_12490 PF12804 MobA-like NTP transferase domain WM43_12490 PF14602 Hexapeptide repeat of succinyl-transferase WM43_12490 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_12495 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain WM43_12495 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain WM43_12500 PF02874 ATP synthase alpha/beta family, beta-barrel domain WM43_12500 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WM43_12505 PF00231 ATP synthase WM43_12510 PF00306 ATP synthase alpha/beta chain, C terminal domain WM43_12510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WM43_12510 PF02874 ATP synthase alpha/beta family, beta-barrel domain WM43_12515 PF00213 ATP synthase delta (OSCP) subunit WM43_12520 PF00430 ATP synthase B/B' CF(0) WM43_12525 PF00137 ATP synthase subunit C WM43_12530 PF00119 ATP synthase A chain WM43_12540 PF17762 HTH domain found in ParB protein WM43_12540 PF02195 ParB-like nuclease domain WM43_12545 PF13614 AAA domain WM43_12550 PF02527 rRNA small subunit methyltransferase G WM43_12555 PF13932 GidA associated domain WM43_12555 PF01134 Glucose inhibited division protein A WM43_12560 PF00258 Flavodoxin WM43_12565 PF00593 TonB dependent receptor WM43_12565 PF07715 TonB-dependent Receptor Plug Domain WM43_12570 PF00005 ABC transporter WM43_12575 PF00005 ABC transporter WM43_12580 PF01497 Periplasmic binding protein WM43_12585 PF01032 FecCD transport family WM43_12590 PF12631 MnmE helical domain WM43_12590 PF10396 GTP-binding protein TrmE N-terminus WM43_12590 PF01926 50S ribosome-binding GTPase WM43_12595 PF02096 60Kd inner membrane protein WM43_12595 PF14849 YidC periplasmic domain WM43_12600 PF00825 Ribonuclease P WM43_12605 PF00468 Ribosomal protein L34 WM43_12615 PF00528 Binding-protein-dependent transport system inner membrane component WM43_12620 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_12625 PF00308 Bacterial dnaA protein WM43_12625 PF08299 Bacterial dnaA protein helix-turn-helix WM43_12625 PF11638 DnaA N-terminal domain WM43_12630 PF00712 DNA polymerase III beta subunit, N-terminal domain WM43_12630 PF02767 DNA polymerase III beta subunit, central domain WM43_12630 PF02768 DNA polymerase III beta subunit, C-terminal domain WM43_12635 PF02463 RecF/RecN/SMC N terminal domain WM43_12640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12640 PF01751 Toprim domain WM43_12640 PF00986 DNA gyrase B subunit, carboxyl terminus WM43_12640 PF00204 DNA gyrase B WM43_12640 PF18053 DNA gyrase B subunit insert domain WM43_12650 PF08279 HTH domain WM43_12650 PF13280 WYL domain WM43_12655 PF01965 DJ-1/PfpI family WM43_12655 PF12833 Helix-turn-helix domain WM43_12660 PF12706 Beta-lactamase superfamily domain WM43_12665 PF00011 Hsp20/alpha crystallin family WM43_12670 PF00011 Hsp20/alpha crystallin family WM43_12675 PF00155 Aminotransferase class I and II WM43_12690 PF07690 Major Facilitator Superfamily WM43_12695 PF00072 Response regulator receiver domain WM43_12695 PF00486 Transcriptional regulatory protein, C terminal WM43_12700 PF00512 His Kinase A (phospho-acceptor) domain WM43_12700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12700 PF13492 GAF domain WM43_12700 PF02702 Osmosensitive K+ channel His kinase sensor domain WM43_12700 PF13493 Domain of unknown function (DUF4118) WM43_12705 PF02669 K+-transporting ATPase, c chain WM43_12715 PF03814 Potassium-transporting ATPase A subunit WM43_12720 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_12720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_12725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12725 PF00512 His Kinase A (phospho-acceptor) domain WM43_12725 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_12730 PF00873 AcrB/AcrD/AcrF family WM43_12735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_12740 PF00440 Bacterial regulatory proteins, tetR family WM43_12775 PF12146 Serine aminopeptidase, S33 WM43_12780 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_12785 PF12105 SpoU, rRNA methylase, C-terminal WM43_12785 PF00588 SpoU rRNA Methylase family WM43_12790 PF02824 TGS domain WM43_12790 PF04607 Region found in RelA / SpoT proteins WM43_12790 PF13291 ACT domain WM43_12795 PF01192 RNA polymerase Rpb6 WM43_12800 PF00625 Guanylate kinase WM43_12810 PF01075 Glycosyltransferase family 9 (heptosyltransferase) WM43_12825 PF00892 EamA-like transporter family WM43_12840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_12840 PF03466 LysR substrate binding domain WM43_12845 PF00579 tRNA synthetases class I (W and Y) WM43_12850 PF00582 Universal stress protein family WM43_12855 PF07055 Enoyl reductase FAD binding domain WM43_12855 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase WM43_12855 PF12241 Trans-2-enoyl-CoA reductase catalytic region WM43_12860 PF00210 Ferritin-like domain WM43_12870 PF06580 Histidine kinase WM43_12870 PF07694 5TMR of 5TMR-LYT WM43_12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_12875 PF04397 LytTr DNA-binding domain WM43_12875 PF00072 Response regulator receiver domain WM43_12880 PF07690 Major Facilitator Superfamily WM43_12885 PF02222 ATP-grasp domain WM43_12885 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain WM43_12890 PF00731 AIR carboxylase WM43_12905 PF03466 LysR substrate binding domain WM43_12905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_12910 PF00593 TonB dependent receptor WM43_12910 PF07715 TonB-dependent Receptor Plug Domain WM43_12915 PF01177 Asp/Glu/Hydantoin racemase WM43_12950 PF00899 ThiF family WM43_12955 PF02657 Fe-S metabolism associated domain WM43_12960 PF00266 Aminotransferase class-V WM43_12965 PF00580 UvrD/REP helicase N-terminal domain WM43_12965 PF13361 UvrD-like helicase C-terminal domain WM43_12970 PF03707 Bacterial signalling protein N terminal repeat WM43_12970 PF00990 Diguanylate cyclase, GGDEF domain WM43_12970 PF00563 EAL domain WM43_12975 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WM43_12980 PF08240 Alcohol dehydrogenase GroES-like domain WM43_12980 PF00107 Zinc-binding dehydrogenase WM43_12985 PF00155 Aminotransferase class I and II WM43_12990 PF08360 QacR-like protein, C-terminal region WM43_12990 PF00440 Bacterial regulatory proteins, tetR family WM43_12995 PF01370 NAD dependent epimerase/dehydratase family WM43_13000 PF13439 Glycosyltransferase Family 4 WM43_13040 PF14001 YdfZ protein WM43_13060 PF13361 UvrD-like helicase C-terminal domain WM43_13060 PF00580 UvrD/REP helicase N-terminal domain WM43_13085 PF02872 5'-nucleotidase, C-terminal domain WM43_13085 PF00149 Calcineurin-like phosphoesterase WM43_13095 PF00571 CBS domain WM43_13095 PF01769 Divalent cation transporter WM43_13095 PF03448 MgtE intracellular N domain WM43_13100 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WM43_13100 PF14824 Sirohaem biosynthesis protein central WM43_13100 PF10414 Sirohaem synthase dimerisation region WM43_13105 PF01226 Formate/nitrite transporter WM43_13110 PF13806 Rieske-like [2Fe-2S] domain WM43_13115 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_13115 PF18267 Rubredoxin NAD+ reductase C-terminal domain WM43_13115 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WM43_13115 PF04324 BFD-like [2Fe-2S] binding domain WM43_13115 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WM43_13130 PF00005 ABC transporter WM43_13135 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_13145 PF10431 C-terminal, D2-small domain, of ClpB protein WM43_13145 PF07724 AAA domain (Cdc48 subfamily) WM43_13145 PF00004 ATPase family associated with various cellular activities (AAA) WM43_13150 PF00227 Proteasome subunit WM43_13160 PF03485 Arginyl tRNA synthetase N terminal domain WM43_13160 PF00750 tRNA synthetases class I (R) WM43_13160 PF05746 DALR anticodon binding domain WM43_13170 PF04542 Sigma-70 region 2 WM43_13170 PF04545 Sigma-70, region 4 WM43_13180 PF02673 Bacitracin resistance protein BacA WM43_13185 PF01263 Aldose 1-epimerase WM43_13190 PF10509 Galactokinase galactose-binding signature WM43_13190 PF08544 GHMP kinases C terminal WM43_13190 PF00288 GHMP kinases N terminal domain WM43_13195 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain WM43_13195 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain WM43_13200 PF16363 GDP-mannose 4,6 dehydratase WM43_13205 PF00356 Bacterial regulatory proteins, lacI family WM43_13210 PF02836 Glycosyl hydrolases family 2, TIM barrel domain WM43_13210 PF02837 Glycosyl hydrolases family 2, sugar binding domain WM43_13210 PF16353 Domain of unknown function(DUF4981) WM43_13210 PF02929 Beta galactosidase small chain WM43_13210 PF00703 Glycosyl hydrolases family 2 WM43_13215 PF13407 Periplasmic binding protein domain WM43_13220 PF00005 ABC transporter WM43_13225 PF02653 Branched-chain amino acid transport system / permease component WM43_13230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_13230 PF00672 HAMP domain WM43_13230 PF02743 Cache domain WM43_13235 PF05958 tRNA (Uracil-5-)-methyltransferase WM43_13250 PF02903 Alpha amylase, N-terminal ig-like domain WM43_13250 PF00128 Alpha amylase, catalytic domain WM43_13265 PF00012 Hsp70 protein WM43_13270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WM43_13270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WM43_13275 PF05981 CreA protein WM43_13290 PF01258 Prokaryotic dksA/traR C4-type zinc finger WM43_13295 PF00120 Glutamine synthetase, catalytic domain WM43_13300 PF00202 Aminotransferase class-III WM43_13305 PF13416 Bacterial extracellular solute-binding protein WM43_13310 PF13416 Bacterial extracellular solute-binding protein WM43_13315 PF08402 TOBE domain WM43_13315 PF00005 ABC transporter WM43_13320 PF00528 Binding-protein-dependent transport system inner membrane component WM43_13325 PF00528 Binding-protein-dependent transport system inner membrane component WM43_13330 PF03475 3-alpha domain WM43_13330 PF03473 MOSC domain WM43_13345 PF03061 Thioesterase superfamily WM43_13350 PF16124 RecQ zinc-binding WM43_13350 PF00271 Helicase conserved C-terminal domain WM43_13350 PF00270 DEAD/DEAH box helicase WM43_13350 PF09382 RQC domain WM43_13350 PF00570 HRDC domain WM43_13355 PF00034 Cytochrome c WM43_13360 PF02696 Uncharacterized ACR, YdiU/UPF0061 family WM43_13370 PF02592 Putative vitamin uptake transporter WM43_13375 PF03737 Aldolase/RraA WM43_13380 PF00672 HAMP domain WM43_13380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_13390 PF01197 Ribosomal protein L31 WM43_13395 PF00270 DEAD/DEAH box helicase WM43_13395 PF17764 3′ DNA-binding domain (3′BD) WM43_13395 PF00271 Helicase conserved C-terminal domain WM43_13395 PF18319 PriA DNA helicase Cys-rich region (CRR) domain WM43_13395 PF18074 Primosomal protein N C-terminal domain WM43_13405 PF13460 NAD(P)H-binding WM43_13405 PF11066 Protein of unknown function (DUF2867) WM43_13410 PF03222 Tryptophan/tyrosine permease family WM43_13415 PF00390 Malic enzyme, N-terminal domain WM43_13415 PF03949 Malic enzyme, NAD binding domain WM43_13420 PF03631 Virulence factor BrkB WM43_13425 PF02580 D-Tyr-tRNA(Tyr) deacylase WM43_13430 PF17284 Spermidine synthase tetramerisation domain WM43_13435 PF09500 Putative thioesterase (yiiD_Cterm) WM43_13435 PF00583 Acetyltransferase (GNAT) family WM43_13445 PF17191 RecG wedge domain WM43_13445 PF00270 DEAD/DEAH box helicase WM43_13445 PF00271 Helicase conserved C-terminal domain WM43_13450 PF13091 PLD-like domain WM43_13455 PF02447 GntP family permease WM43_13460 PF01202 Shikimate kinase WM43_13465 PF00920 Dehydratase family WM43_13470 PF01081 KDPG and KHG aldolase WM43_13475 PF00356 Bacterial regulatory proteins, lacI family WM43_13475 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family WM43_13485 PF01551 Peptidase family M23 WM43_13490 PF01676 Metalloenzyme superfamily WM43_13490 PF06415 BPG-independent PGAM N-terminus (iPGM_N) WM43_13495 PF00581 Rhodanese-like domain WM43_13500 PF02556 Preprotein translocase subunit SecB WM43_13505 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus WM43_13505 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus WM43_13510 PF01106 NifU-like domain WM43_13510 PF01521 Iron-sulphur cluster biosynthesis WM43_13515 PF00156 Phosphoribosyl transferase domain WM43_13520 PF00561 alpha/beta hydrolase fold WM43_13540 PF16921 Tex protein YqgF-like domain WM43_13540 PF17674 HHH domain WM43_13540 PF00575 S1 RNA binding domain WM43_13540 PF09371 Tex-like protein N-terminal domain WM43_13545 PF03449 Transcription elongation factor, N-terminal WM43_13545 PF01272 Transcription elongation factor, GreA/GreB, C-term WM43_13550 PF00072 Response regulator receiver domain WM43_13550 PF00486 Transcriptional regulatory protein, C terminal WM43_13555 PF00672 HAMP domain WM43_13555 PF00512 His Kinase A (phospho-acceptor) domain WM43_13555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_13565 PF00338 Ribosomal protein S10p/S20e WM43_13570 PF00297 Ribosomal protein L3 WM43_13575 PF00573 Ribosomal protein L4/L1 family WM43_13580 PF00276 Ribosomal protein L23 WM43_13585 PF00181 Ribosomal Proteins L2, RNA binding domain WM43_13585 PF03947 Ribosomal Proteins L2, C-terminal domain WM43_13590 PF00203 Ribosomal protein S19 WM43_13595 PF00237 Ribosomal protein L22p/L17e WM43_13600 PF07650 KH domain WM43_13600 PF00189 Ribosomal protein S3, C-terminal domain WM43_13605 PF00252 Ribosomal protein L16p/L10e WM43_13610 PF00831 Ribosomal L29 protein WM43_13615 PF00366 Ribosomal protein S17 WM43_13620 PF00238 Ribosomal protein L14p/L23e WM43_13625 PF00467 KOW motif WM43_13625 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 WM43_13630 PF00673 ribosomal L5P family C-terminus WM43_13630 PF00281 Ribosomal protein L5 WM43_13635 PF00253 Ribosomal protein S14p/S29e WM43_13640 PF00410 Ribosomal protein S8 WM43_13645 PF00347 Ribosomal protein L6 WM43_13650 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast WM43_13655 PF00333 Ribosomal protein S5, N-terminal domain WM43_13655 PF03719 Ribosomal protein S5, C-terminal domain WM43_13660 PF00327 Ribosomal protein L30p/L7e WM43_13665 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A WM43_13670 PF00344 SecY translocase WM43_13675 PF00416 Ribosomal protein S13/S18 WM43_13680 PF00411 Ribosomal protein S11 WM43_13685 PF01479 S4 domain WM43_13685 PF00163 Ribosomal protein S4/S9 N-terminal domain WM43_13690 PF01000 RNA polymerase Rpb3/RpoA insert domain WM43_13690 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain WM43_13690 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain WM43_13695 PF01196 Ribosomal protein L17 WM43_13725 PF00593 TonB dependent receptor WM43_13725 PF07715 TonB-dependent Receptor Plug Domain WM43_13730 PF00990 Diguanylate cyclase, GGDEF domain WM43_13730 PF17151 Periplasmic sensor domain WM43_13735 PF00672 HAMP domain WM43_13735 PF00512 His Kinase A (phospho-acceptor) domain WM43_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_13740 PF00486 Transcriptional regulatory protein, C terminal WM43_13740 PF00072 Response regulator receiver domain WM43_13755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_13755 PF03466 LysR substrate binding domain WM43_13765 PF17954 Quercetinase C-terminal cupin domain WM43_13765 PF02678 Pirin WM43_13770 PF07681 DoxX WM43_13775 PF17946 RecC C-terminal domain WM43_13780 PF13361 UvrD-like helicase C-terminal domain WM43_13780 PF12705 PD-(D/E)XK nuclease superfamily WM43_13780 PF00580 UvrD/REP helicase N-terminal domain WM43_13785 PF13538 UvrD-like helicase C-terminal domain WM43_13795 PF13808 DDE_Tnp_1-associated WM43_13795 PF01609 Transposase DDE domain WM43_13805 PF08448 PAS fold WM43_13805 PF00990 Diguanylate cyclase, GGDEF domain WM43_13820 PF00392 Bacterial regulatory proteins, gntR family WM43_13820 PF07702 UTRA domain WM43_13835 PF00528 Binding-protein-dependent transport system inner membrane component WM43_13845 PF08402 TOBE domain WM43_13845 PF00005 ABC transporter WM43_13855 PF00990 Diguanylate cyclase, GGDEF domain WM43_13875 PF01053 Cys/Met metabolism PLP-dependent enzyme WM43_13880 PF12793 Sugar transport-related sRNA regulator N-term WM43_13880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_13885 PF00141 Peroxidase WM43_13900 PF03280 Proteobacterial lipase chaperone protein WM43_13905 PF00561 alpha/beta hydrolase fold WM43_13910 PF00579 tRNA synthetases class I (W and Y) WM43_13910 PF01479 S4 domain WM43_13915 PF00196 Bacterial regulatory proteins, luxR family WM43_13935 PF06628 Catalase-related immune-responsive WM43_13935 PF00199 Catalase WM43_13960 PF00133 tRNA synthetases class I (I, L, M and V) WM43_13960 PF08264 Anticodon-binding domain of tRNA WM43_13960 PF10458 Valyl tRNA synthetase tRNA binding arm WM43_13965 PF04364 DNA polymerase III chi subunit, HolC WM43_13970 PF02789 Cytosol aminopeptidase family, N-terminal domain WM43_13970 PF00883 Cytosol aminopeptidase family, catalytic domain WM43_13975 PF03739 Lipopolysaccharide export system permease LptF/LptG WM43_13980 PF03739 Lipopolysaccharide export system permease LptF/LptG WM43_13995 PF00589 Phage integrase family WM43_13995 PF14659 Phage integrase, N-terminal SAM-like domain WM43_14000 PF01527 Transposase WM43_14005 PF00665 Integrase core domain WM43_14015 PF00593 TonB dependent receptor WM43_14015 PF07715 TonB-dependent Receptor Plug Domain WM43_14025 PF00768 D-alanyl-D-alanine carboxypeptidase WM43_14030 PF13520 Amino acid permease WM43_14050 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded WM43_14065 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase WM43_14070 PF02602 Uroporphyrinogen-III synthase HemD WM43_14075 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain WM43_14075 PF03900 Porphobilinogen deaminase, C-terminal domain WM43_14080 PF12633 Adenylate cyclase NT domain WM43_14080 PF01295 Adenylate cyclase, class-I WM43_14085 PF02230 Phospholipase/Carboxylesterase WM43_14090 PF01491 Frataxin-like domain WM43_14095 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain WM43_14095 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WM43_14100 PF01678 Diaminopimelate epimerase WM43_14110 PF00589 Phage integrase family WM43_14110 PF02899 Phage integrase, N-terminal SAM-like domain WM43_14115 PF13419 Haloacid dehalogenase-like hydrolase WM43_14125 PF00027 Cyclic nucleotide-binding domain WM43_14125 PF13545 Crp-like helix-turn-helix domain WM43_14135 PF07722 Peptidase C26 WM43_14140 PF04751 Protein of unknown function (DUF615) WM43_14160 PF00075 RNase H WM43_14210 PF00665 Integrase core domain WM43_14210 PF13276 HTH-like domain WM43_14215 PF01527 Transposase WM43_14225 PF00239 Resolvase, N terminal domain WM43_14225 PF02796 Helix-turn-helix domain of resolvase WM43_14255 PF01523 Putative modulator of DNA gyrase WM43_14260 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) WM43_14265 PF01722 BolA-like protein WM43_14275 PF05494 MlaC protein WM43_14280 PF02470 MlaD protein WM43_14285 PF02405 Permease MlaE WM43_14290 PF00005 ABC transporter WM43_14295 PF00571 CBS domain WM43_14295 PF01380 SIS domain WM43_14305 PF06835 Lipopolysaccharide-assembly, LptC-related WM43_14310 PF03968 OstA-like protein WM43_14315 PF12399 Branched-chain amino acid ATP-binding cassette transporter WM43_14315 PF00005 ABC transporter WM43_14320 PF04963 Sigma-54 factor, core binding domain WM43_14320 PF04552 Sigma-54, DNA binding domain WM43_14320 PF00309 Sigma-54 factor, Activator interacting domain (AID) WM43_14325 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein WM43_14330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_14335 PF03668 P-loop ATPase protein family WM43_14340 PF00381 PTS HPr component phosphorylation site WM43_14345 PF08279 HTH domain WM43_14345 PF00874 PRD domain WM43_14345 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_14345 PF05043 Mga helix-turn-helix domain WM43_14350 PF07071 KDGP aldolase WM43_14355 PF03841 L-seryl-tRNA selenium transferase WM43_14360 PF01979 Amidohydrolase family WM43_14390 PF13180 PDZ domain WM43_14395 PF13180 PDZ domain WM43_14395 PF00595 PDZ domain WM43_14405 PF03969 AFG1-like ATPase WM43_14410 PF00572 Ribosomal protein L13 WM43_14415 PF00380 Ribosomal protein S9/S16 WM43_14420 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal WM43_14420 PF00355 Rieske [2Fe-2S] domain WM43_14425 PF00032 Cytochrome b(C-terminal)/b6/petD WM43_14425 PF00033 Cytochrome b/b6/petB WM43_14430 PF02167 Cytochrome C1 family WM43_14435 PF00043 Glutathione S-transferase, C-terminal domain WM43_14435 PF02798 Glutathione S-transferase, N-terminal domain WM43_14440 PF04386 Stringent starvation protein B WM43_14445 PF04972 BON domain WM43_14450 PF13580 SIS domain WM43_14455 PF02021 Uncharacterised protein family UPF0102 WM43_14460 PF04348 LppC putative lipoprotein WM43_14465 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WM43_14475 PF02381 MraZ protein, putative antitoxin-like WM43_14480 PF01795 MraW methylase family WM43_14485 PF04999 Cell division protein FtsL WM43_14490 PF03717 Penicillin-binding Protein dimerisation domain WM43_14490 PF00905 Penicillin binding protein transpeptidase domain WM43_14495 PF02875 Mur ligase family, glutamate ligase domain WM43_14495 PF01225 Mur ligase family, catalytic domain WM43_14495 PF08245 Mur ligase middle domain WM43_14500 PF08245 Mur ligase middle domain WM43_14500 PF02875 Mur ligase family, glutamate ligase domain WM43_14500 PF01225 Mur ligase family, catalytic domain WM43_14505 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 WM43_14505 PF00953 Glycosyl transferase family 4 WM43_14510 PF08245 Mur ligase middle domain WM43_14510 PF02875 Mur ligase family, glutamate ligase domain WM43_14515 PF01098 Cell cycle protein WM43_14520 PF03033 Glycosyltransferase family 28 N-terminal domain WM43_14520 PF04101 Glycosyltransferase family 28 C-terminal domain WM43_14525 PF08245 Mur ligase middle domain WM43_14525 PF01225 Mur ligase family, catalytic domain WM43_14525 PF02875 Mur ligase family, glutamate ligase domain WM43_14530 PF03799 Cell division protein FtsQ WM43_14530 PF08478 POTRA domain, FtsQ-type WM43_14535 PF02491 SHS2 domain inserted in FTSA WM43_14540 PF12327 FtsZ family, C-terminal domain WM43_14540 PF00091 Tubulin/FtsZ family, GTPase domain WM43_14545 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase WM43_14555 PF07516 SecA Wing and Scaffold domain WM43_14555 PF01043 SecA preprotein cross-linking domain WM43_14555 PF02810 SEC-C motif WM43_14555 PF07517 SecA DEAD-like domain WM43_14560 PF00293 NUDIX domain WM43_14565 PF03884 DNA gyrase inhibitor YacG WM43_14570 PF07072 Cell division protein WM43_14575 PF01121 Dephospho-CoA kinase WM43_14580 PF06750 Bacterial Peptidase A24 N-terminal domain WM43_14580 PF01478 Type IV leader peptidase family WM43_14585 PF00482 Type II secretion system (T2SS), protein F WM43_14590 PF00437 Type II/IV secretion system protein WM43_14590 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain WM43_14595 PF07963 Prokaryotic N-terminal methylation motif WM43_14600 PF13808 DDE_Tnp_1-associated WM43_14600 PF01609 Transposase DDE domain WM43_14605 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain WM43_14605 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain WM43_14615 PF01510 N-acetylmuramoyl-L-alanine amidase WM43_14620 PF07729 FCD domain WM43_14620 PF00392 Bacterial regulatory proteins, gntR family WM43_14625 PF17831 Pyruvate dehydrogenase E1 component middle domain WM43_14625 PF00456 Transketolase, thiamine diphosphate binding domain WM43_14630 PF02817 e3 binding domain WM43_14630 PF00364 Biotin-requiring enzyme WM43_14630 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) WM43_14635 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_14635 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_14640 PF00990 Diguanylate cyclase, GGDEF domain WM43_14640 PF03707 Bacterial signalling protein N terminal repeat WM43_14640 PF00563 EAL domain WM43_14645 PF12729 Four helix bundle sensory module for signal transduction WM43_14645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_14645 PF00672 HAMP domain WM43_14650 PF01734 Patatin-like phospholipase WM43_14655 PF11791 Aconitate B N-terminal domain WM43_14655 PF00330 Aconitase family (aconitate hydratase) WM43_14655 PF06434 Aconitate hydratase 2 N-terminus WM43_14660 PF12792 CSS motif domain associated with EAL WM43_14660 PF00563 EAL domain WM43_14670 PF02492 CobW/HypB/UreG, nucleotide-binding domain WM43_14670 PF07683 Cobalamin synthesis protein cobW C-terminal domain WM43_14675 PF00873 AcrB/AcrD/AcrF family WM43_14690 PF07690 Major Facilitator Superfamily WM43_14700 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WM43_14705 PF02152 Dihydroneopterin aldolase WM43_14710 PF02660 Glycerol-3-phosphate acyltransferase WM43_14745 PF01609 Transposase DDE domain WM43_14745 PF05598 Transposase domain (DUF772) WM43_14760 PF00206 Lyase WM43_14760 PF14698 Argininosuccinate lyase C-terminal WM43_14765 PF00764 Arginosuccinate synthase WM43_14770 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain WM43_14770 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain WM43_14775 PF00696 Amino acid kinase family WM43_14780 PF01118 Semialdehyde dehydrogenase, NAD binding domain WM43_14780 PF02774 Semialdehyde dehydrogenase, dimerisation domain WM43_14785 PF01546 Peptidase family M20/M25/M40 WM43_14785 PF07687 Peptidase dimerisation domain WM43_14790 PF00311 Phosphoenolpyruvate carboxylase WM43_14795 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_14805 PF00990 Diguanylate cyclase, GGDEF domain WM43_14805 PF17151 Periplasmic sensor domain WM43_14815 PF06055 Exopolysaccharide synthesis, ExoD WM43_14825 PF00990 Diguanylate cyclase, GGDEF domain WM43_14825 PF08448 PAS fold WM43_14830 PF00909 Ammonium Transporter Family WM43_14835 PF05433 Glycine zipper 2TM domain WM43_14840 PF00583 Acetyltransferase (GNAT) family WM43_14845 PF11756 Nitrous oxide-stimulated promoter WM43_14850 PF01321 Creatinase/Prolidase N-terminal domain WM43_14850 PF00557 Metallopeptidase family M24 WM43_14855 PF00392 Bacterial regulatory proteins, gntR family WM43_14865 PF01430 Hsp33 protein WM43_14870 PF01479 S4 domain WM43_14880 PF01569 PAP2 superfamily WM43_14885 PF01594 AI-2E family transporter WM43_14905 PF00158 Sigma-54 interaction domain WM43_14905 PF02954 Bacterial regulatory protein, Fis family WM43_14905 PF00989 PAS fold WM43_14910 PF00465 Iron-containing alcohol dehydrogenase WM43_14915 PF00391 PEP-utilising enzyme, mobile domain WM43_14915 PF00381 PTS HPr component phosphorylation site WM43_14915 PF05524 PEP-utilising enzyme, N-terminal WM43_14915 PF03610 PTS system fructose IIA component WM43_14920 PF02734 DAK2 domain WM43_14925 PF02733 Dak1 domain WM43_14930 PF00860 Permease family WM43_14935 PF00313 'Cold-shock' DNA-binding domain WM43_14945 PF01545 Cation efflux family WM43_14945 PF16916 Dimerisation domain of Zinc Transporter WM43_14955 PF01609 Transposase DDE domain WM43_14955 PF05598 Transposase domain (DUF772) WM43_14965 PF01695 IstB-like ATP binding protein WM43_14970 PF00665 Integrase core domain WM43_14975 PF04851 Type III restriction enzyme, res subunit WM43_14980 PF01609 Transposase DDE domain WM43_14980 PF13808 DDE_Tnp_1-associated WM43_15005 PF13276 HTH-like domain WM43_15005 PF00665 Integrase core domain WM43_15010 PF01527 Transposase WM43_15020 PF00589 Phage integrase family WM43_15020 PF02899 Phage integrase, N-terminal SAM-like domain WM43_15025 PF00817 impB/mucB/samB family WM43_15025 PF11799 impB/mucB/samB family C-terminal domain WM43_15025 PF13438 Domain of unknown function (DUF4113) WM43_15030 PF13358 DDE superfamily endonuclease WM43_15030 PF13592 Winged helix-turn helix WM43_15035 PF01381 Helix-turn-helix WM43_15045 PF13276 HTH-like domain WM43_15045 PF13333 Integrase core domain WM43_15045 PF00665 Integrase core domain WM43_15055 PF00440 Bacterial regulatory proteins, tetR family WM43_15055 PF02909 Tetracyclin repressor-like, C-terminal domain WM43_15060 PF07690 Major Facilitator Superfamily WM43_15070 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain WM43_15070 PF14490 Helix-hairpin-helix containing domain WM43_15070 PF13538 UvrD-like helicase C-terminal domain WM43_15095 PF00436 Single-strand binding protein family WM43_15100 PF00196 Bacterial regulatory proteins, luxR family WM43_15105 PF10627 Curli assembly protein CsgE WM43_15115 PF03783 Curli production assembly/transport component CsgG WM43_15120 PF13006 Insertion element 4 transposase N-terminal WM43_15120 PF01609 Transposase DDE domain WM43_15140 PF17760 UvrA interaction domain WM43_15140 PF17755 UvrA DNA-binding domain WM43_15140 PF00005 ABC transporter WM43_15145 PF17158 Membrane-associated sensor, integral membrane domain WM43_15145 PF00990 Diguanylate cyclase, GGDEF domain WM43_15150 PF03922 OmpW family WM43_15155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_15155 PF00672 HAMP domain WM43_15165 PF13006 Insertion element 4 transposase N-terminal WM43_15165 PF01609 Transposase DDE domain WM43_15175 PF02219 Methylenetetrahydrofolate reductase WM43_15185 PF03594 Benzoate membrane transport protein WM43_15190 PF01381 Helix-turn-helix WM43_15190 PF07883 Cupin domain WM43_15230 PF04363 Protein of unknown function (DUF496) WM43_15250 PF02464 Competence-damaged protein WM43_15250 PF00994 Probable molybdopterin binding domain WM43_15260 PF04204 Homoserine O-succinyltransferase WM43_15270 PF01037 Lrp/AsnC ligand binding domain WM43_15275 PF00884 Sulfatase WM43_15290 PF16657 Maltogenic Amylase, C-terminal domain WM43_15290 PF02903 Alpha amylase, N-terminal ig-like domain WM43_15290 PF00128 Alpha amylase, catalytic domain WM43_15310 PF00106 short chain dehydrogenase WM43_15315 PF03577 Peptidase family C69 WM43_15325 PF00465 Iron-containing alcohol dehydrogenase WM43_15330 PF02142 MGS-like domain WM43_15340 PF00210 Ferritin-like domain WM43_15355 PF17176 tRNA-binding domain WM43_15355 PF05127 Helicase WM43_15355 PF13718 GNAT acetyltransferase 2 WM43_15355 PF08351 Domain of unknown function (DUF1726) WM43_15360 PF00106 short chain dehydrogenase WM43_15365 PF01584 CheW-like domain WM43_15365 PF00072 Response regulator receiver domain WM43_15375 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WM43_15375 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WM43_15380 PF02698 DUF218 domain WM43_15385 PF08453 Peptidase family M9 N-terminal WM43_15385 PF01752 Collagenase WM43_15390 PF00665 Integrase core domain WM43_15390 PF13276 HTH-like domain WM43_15395 PF01527 Transposase WM43_15400 PF01609 Transposase DDE domain WM43_15400 PF05598 Transposase domain (DUF772) WM43_15410 PF00501 AMP-binding enzyme WM43_15415 PF13378 Enolase C-terminal domain-like WM43_15420 PF00378 Enoyl-CoA hydratase/isomerase WM43_15425 PF12697 Alpha/beta hydrolase family WM43_15430 PF16582 Middle domain of thiamine pyrophosphate WM43_15430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_15430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain WM43_15435 PF00425 chorismate binding enzyme WM43_15440 PF01040 UbiA prenyltransferase family WM43_15460 PF00270 DEAD/DEAH box helicase WM43_15460 PF00271 Helicase conserved C-terminal domain WM43_15460 PF03880 DbpA RNA binding domain WM43_15465 PF07662 Na+ dependent nucleoside transporter C-terminus WM43_15465 PF01773 Na+ dependent nucleoside transporter N-terminus WM43_15465 PF07670 Nucleoside recognition WM43_15470 PF04307 LexA-binding, inner membrane-associated putative hydrolase WM43_15475 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 WM43_15480 PF01544 CorA-like Mg2+ transporter protein WM43_15495 PF00226 DnaJ domain WM43_15495 PF01556 DnaJ C terminal domain WM43_15495 PF00684 DnaJ central domain WM43_15500 PF02080 TrkA-C domain WM43_15500 PF00999 Sodium/hydrogen exchanger family WM43_15500 PF03471 Transporter associated domain WM43_15505 PF05068 Mannitol repressor WM43_15510 PF01232 Mannitol dehydrogenase Rossmann domain WM43_15510 PF08125 Mannitol dehydrogenase C-terminal domain WM43_15515 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WM43_15515 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_15515 PF02378 Phosphotransferase system, EIIC WM43_15520 PF03279 Bacterial lipid A biosynthesis acyltransferase WM43_15525 PF01467 Cytidylyltransferase-like WM43_15525 PF00294 pfkB family carbohydrate kinase WM43_15530 PF02321 Outer membrane efflux protein WM43_15535 PF00293 NUDIX domain WM43_15540 PF06853 Protein of unknown function (DUF1249) WM43_15545 PF00149 Calcineurin-like phosphoesterase WM43_15550 PF05728 Uncharacterised protein family (UPF0227) WM43_15555 PF00293 NUDIX domain WM43_15560 PF07869 Protein of unknown function (DUF1656) WM43_15565 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_15565 PF00529 HlyD membrane-fusion protein of T1SS WM43_15570 PF04632 Fusaric acid resistance protein family WM43_15575 PF00986 DNA gyrase B subunit, carboxyl terminus WM43_15575 PF00204 DNA gyrase B WM43_15575 PF01751 Toprim domain WM43_15575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_15580 PF00521 DNA gyrase/topoisomerase IV, subunit A WM43_15580 PF03989 DNA gyrase C-terminal domain, beta-propeller WM43_15600 PF03466 LysR substrate binding domain WM43_15600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_15610 PF00854 POT family WM43_15630 PF00226 DnaJ domain WM43_15630 PF01556 DnaJ C terminal domain WM43_15630 PF00684 DnaJ central domain WM43_15645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_15645 PF03466 LysR substrate binding domain WM43_15650 PF00578 AhpC/TSA family WM43_15670 PF01553 Acyltransferase WM43_15675 PF04012 PspA/IM30 family WM43_15690 PF01541 GIY-YIG catalytic domain WM43_15700 PF00892 EamA-like transporter family WM43_15705 PF03167 Uracil DNA glycosylase superfamily WM43_15710 PF00892 EamA-like transporter family WM43_15715 PF03466 LysR substrate binding domain WM43_15715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_15720 PF00950 ABC 3 transport family WM43_15725 PF00005 ABC transporter WM43_15730 PF01297 Zinc-uptake complex component A periplasmic WM43_15750 PF01551 Peptidase family M23 WM43_15750 PF08525 Opacity-associated protein A N-terminal motif WM43_15750 PF01476 LysM domain WM43_15755 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WM43_15760 PF04222 Protein of unknown function (DUF416) WM43_15775 PF02028 BCCT, betaine/carnitine/choline family transporter WM43_15780 PF01743 Poly A polymerase head domain WM43_15780 PF12627 Probable RNA and SrmB- binding site of polymerase A WM43_15780 PF01966 HD domain WM43_15785 PF10576 Iron-sulfur binding domain of endonuclease III WM43_15785 PF00633 Helix-hairpin-helix motif WM43_15785 PF14815 NUDIX domain WM43_15785 PF00730 HhH-GPD superfamily base excision DNA repair protein WM43_15790 PF04362 Bacterial Fe(2+) trafficking WM43_15795 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain WM43_15795 PF01464 Transglycosylase SLT domain WM43_15800 PF04076 Bacterial OB fold (BOF) protein WM43_15805 PF00657 GDSL-like Lipase/Acylhydrolase WM43_15810 PF01389 OmpA-like transmembrane domain WM43_15810 PF00691 OmpA family WM43_15815 PF00990 Diguanylate cyclase, GGDEF domain WM43_15820 PF00575 S1 RNA binding domain WM43_15820 PF17876 Cold shock domain WM43_15820 PF00773 RNB domain WM43_15820 PF08461 Ribonuclease R winged-helix domain WM43_15820 PF08206 Ribonuclease B OB domain WM43_15825 PF00588 SpoU rRNA Methylase family WM43_15825 PF08032 RNA 2'-O ribose methyltransferase substrate binding WM43_15835 PF13673 Acetyltransferase (GNAT) domain WM43_15840 PF00271 Helicase conserved C-terminal domain WM43_15840 PF00270 DEAD/DEAH box helicase WM43_15845 PF05175 Methyltransferase small domain WM43_15850 PF05525 Branched-chain amino acid transport protein WM43_15855 PF05525 Branched-chain amino acid transport protein WM43_15875 PF01207 Dihydrouridine synthase (Dus) WM43_15880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_15880 PF08447 PAS fold WM43_15890 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_15900 PF00132 Bacterial transferase hexapeptide (six repeats) WM43_15905 PF10952 Protein of unknown function (DUF2753) WM43_15910 PF00378 Enoyl-CoA hydratase/isomerase WM43_15925 PF00106 short chain dehydrogenase WM43_15930 PF03129 Anticodon binding domain WM43_15930 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) WM43_15930 PF04073 Aminoacyl-tRNA editing domain WM43_15935 PF05958 tRNA (Uracil-5-)-methyltransferase WM43_15935 PF01938 TRAM domain WM43_15945 PF02470 MlaD protein WM43_15950 PF04403 Paraquat-inducible protein A WM43_15955 PF17209 Hfq protein WM43_15960 PF13419 Haloacid dehalogenase-like hydrolase WM43_15970 PF00360 Phytochrome region WM43_15970 PF01590 GAF domain WM43_15970 PF00563 EAL domain WM43_15970 PF00990 Diguanylate cyclase, GGDEF domain WM43_15975 PF08206 Ribonuclease B OB domain WM43_15975 PF00773 RNB domain WM43_15975 PF17876 Cold shock domain WM43_15980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_15980 PF03466 LysR substrate binding domain WM43_15985 PF00765 Autoinducer synthase WM43_15990 PF03472 Autoinducer binding domain WM43_15990 PF00196 Bacterial regulatory proteins, luxR family WM43_15995 PF01810 LysE type translocator WM43_16000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_16000 PF00672 HAMP domain WM43_16005 PF07499 RuvA, C-terminal domain WM43_16005 PF01330 RuvA N terminal domain WM43_16010 PF17864 RuvB AAA lid domain WM43_16010 PF05491 RuvB C-terminal winged helix domain WM43_16010 PF05496 Holliday junction DNA helicase RuvB P-loop domain WM43_16015 PF01654 Cytochrome bd terminal oxidase subunit I WM43_16020 PF02322 Cytochrome bd terminal oxidase subunit II WM43_16025 PF08173 Membrane bound YbgT-like protein WM43_16035 PF03061 Thioesterase superfamily WM43_16040 PF01618 MotA/TolQ/ExbB proton channel family WM43_16045 PF02472 Biopolymer transport protein ExbD/TolR WM43_16055 PF07676 WD40-like Beta Propeller Repeat WM43_16055 PF04052 TolB amino-terminal domain WM43_16060 PF00691 OmpA family WM43_16065 PF13174 Tetratricopeptide repeat WM43_16065 PF16331 TolA binding protein trimerisation WM43_16130 PF00209 Sodium:neurotransmitter symporter family WM43_16140 PF00209 Sodium:neurotransmitter symporter family WM43_16160 PF07690 Major Facilitator Superfamily WM43_16170 PF01037 Lrp/AsnC ligand binding domain WM43_16185 PF13344 Haloacid dehalogenase-like hydrolase WM43_16185 PF00293 NUDIX domain WM43_16195 PF01641 SelR domain WM43_16200 PF00128 Alpha amylase, catalytic domain WM43_16200 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) WM43_16205 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) WM43_16205 PF00128 Alpha amylase, catalytic domain WM43_16205 PF02806 Alpha amylase, C-terminal all-beta domain WM43_16210 PF02446 4-alpha-glucanotransferase WM43_16215 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WM43_16215 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WM43_16220 PF01263 Aldose 1-epimerase WM43_16225 PF02445 Quinolinate synthetase A protein WM43_16230 PF00672 HAMP domain WM43_16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_16235 PF01957 NfeD-like C-terminal, partner-binding WM43_16240 PF01145 SPFH domain / Band 7 family WM43_16240 PF16200 C-terminal region of band_7 WM43_16245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases WM43_16245 PF10414 Sirohaem synthase dimerisation region WM43_16245 PF14824 Sirohaem biosynthesis protein central WM43_16250 PF01507 Phosphoadenosine phosphosulfate reductase family WM43_16255 PF00009 Elongation factor Tu GTP binding domain WM43_16260 PF02080 TrkA-C domain WM43_16260 PF03600 Citrate transporter WM43_16290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_16290 PF08447 PAS fold WM43_16310 PF00005 ABC transporter WM43_16325 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) WM43_16340 PF00719 Inorganic pyrophosphatase WM43_16345 PF11849 Domain of unknown function (DUF3369) WM43_16355 PF00893 Small Multidrug Resistance protein WM43_16360 PF00893 Small Multidrug Resistance protein WM43_16365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WM43_16370 PF00912 Transglycosylase WM43_16370 PF00905 Penicillin binding protein transpeptidase domain WM43_16370 PF14814 Bifunctional transglycosylase second domain WM43_16375 PF08482 ATP-dependent helicase C-terminal WM43_16375 PF00270 DEAD/DEAH box helicase WM43_16375 PF00271 Helicase conserved C-terminal domain WM43_16375 PF04408 Helicase associated domain (HA2) WM43_16385 PF03749 Sugar fermentation stimulation protein RE domain WM43_16385 PF17746 SfsA N-terminal OB domain WM43_16390 PF01258 Prokaryotic dksA/traR C4-type zinc finger WM43_16395 PF00749 tRNA synthetases class I (E and Q), catalytic domain WM43_16400 PF12627 Probable RNA and SrmB- binding site of polymerase A WM43_16400 PF12626 Polymerase A arginine-rich C-terminus WM43_16400 PF01743 Poly A polymerase head domain WM43_16405 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) WM43_16410 PF02548 Ketopantoate hydroxymethyltransferase WM43_16415 PF02569 Pantoate-beta-alanine ligase WM43_16445 PF01869 BadF/BadG/BcrA/BcrD ATPase family WM43_16450 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component WM43_16455 PF01061 ABC-2 type transporter WM43_16460 PF00005 ABC transporter WM43_16465 PF00156 Phosphoribosyl transferase domain WM43_16470 PF00440 Bacterial regulatory proteins, tetR family WM43_16475 PF02441 Flavoprotein WM43_16480 PF08245 Mur ligase middle domain WM43_16480 PF02875 Mur ligase family, glutamate ligase domain WM43_16480 PF01225 Mur ligase family, catalytic domain WM43_16485 PF01569 PAP2 superfamily WM43_16490 PF01370 NAD dependent epimerase/dehydratase family WM43_16495 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_16495 PF00970 Oxidoreductase FAD-binding domain WM43_16495 PF00175 Oxidoreductase NAD-binding domain WM43_16500 PF03063 Prismane/CO dehydrogenase family WM43_16505 PF00210 Ferritin-like domain WM43_16510 PF01510 N-acetylmuramoyl-L-alanine amidase WM43_16515 PF07308 Protein of unknown function (DUF1456) WM43_16520 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WM43_16520 PF00072 Response regulator receiver domain WM43_16520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_16520 PF01627 Hpt domain WM43_16520 PF00672 HAMP domain WM43_16520 PF00512 His Kinase A (phospho-acceptor) domain WM43_16525 PF01938 TRAM domain WM43_16525 PF05958 tRNA (Uracil-5-)-methyltransferase WM43_16530 PF04607 Region found in RelA / SpoT proteins WM43_16530 PF13291 ACT domain WM43_16530 PF02824 TGS domain WM43_16535 PF03819 MazG nucleotide pyrophosphohydrolase domain WM43_16540 PF06418 CTP synthase N-terminus WM43_16540 PF00117 Glutamine amidotransferase class-I WM43_16545 PF03952 Enolase, N-terminal domain WM43_16545 PF00113 Enolase, C-terminal TIM barrel domain WM43_16550 PF00561 alpha/beta hydrolase fold WM43_16560 PF05598 Transposase domain (DUF772) WM43_16560 PF01609 Transposase DDE domain WM43_16570 PF05598 Transposase domain (DUF772) WM43_16570 PF01609 Transposase DDE domain WM43_16595 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ WM43_16605 PF12848 ABC transporter WM43_16605 PF00005 ABC transporter WM43_16625 PF00155 Aminotransferase class I and II WM43_16625 PF00392 Bacterial regulatory proteins, gntR family WM43_16635 PF01810 LysE type translocator WM43_16640 PF01177 Asp/Glu/Hydantoin racemase WM43_16650 PF04074 YhcH/YjgK/YiaL WM43_16655 PF00871 Acetokinase family WM43_16660 PF00924 Mechanosensitive ion channel WM43_16665 PF03734 L,D-transpeptidase catalytic domain WM43_16665 PF17969 L,D-transpeptidase C-terminal domain WM43_16675 PF00474 Sodium:solute symporter family WM43_16680 PF04977 Septum formation initiator WM43_16685 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase WM43_16690 PF02542 YgbB family WM43_16695 PF01142 tRNA pseudouridine synthase D (TruD) WM43_16700 PF01975 Survival protein SurE WM43_16710 PF09335 SNARE associated Golgi protein WM43_16715 PF01476 LysM domain WM43_16715 PF01551 Peptidase family M23 WM43_16720 PF04542 Sigma-70 region 2 WM43_16720 PF00140 Sigma-70 factor, region 1.2 WM43_16720 PF04539 Sigma-70 region 3 WM43_16720 PF04545 Sigma-70, region 4 WM43_16725 PF00724 NADH:flavin oxidoreductase / NADH oxidase family WM43_16740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_16740 PF03466 LysR substrate binding domain WM43_16745 PF04371 Porphyromonas-type peptidyl-arginine deiminase WM43_16750 PF01425 Amidase WM43_16760 PF00753 Metallo-beta-lactamase superfamily WM43_16770 PF00270 DEAD/DEAH box helicase WM43_16770 PF00271 Helicase conserved C-terminal domain WM43_16775 PF00990 Diguanylate cyclase, GGDEF domain WM43_16785 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase WM43_16790 PF03150 Di-haem cytochrome c peroxidase WM43_16790 PF00034 Cytochrome c WM43_16800 PF00445 Ribonuclease T2 family WM43_16810 PF03060 Nitronate monooxygenase WM43_16835 PF09297 NADH pyrophosphatase zinc ribbon domain WM43_16835 PF00293 NUDIX domain WM43_16835 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain WM43_16850 PF00072 Response regulator receiver domain WM43_16850 PF00486 Transcriptional regulatory protein, C terminal WM43_16870 PF08335 GlnD PII-uridylyltransferase WM43_16870 PF03710 Glutamate-ammonia ligase adenylyltransferase WM43_16880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_16880 PF00672 HAMP domain WM43_16885 PF00027 Cyclic nucleotide-binding domain WM43_16885 PF00520 Ion transport protein WM43_16890 PF08239 Bacterial SH3 domain WM43_16895 PF14850 DNA-binding domain of Proline dehydrogenase WM43_16895 PF18327 Proline utilization A proline dehydrogenase N-terminal domain WM43_16895 PF00171 Aldehyde dehydrogenase family WM43_16895 PF01619 Proline dehydrogenase WM43_16905 PF09297 NADH pyrophosphatase zinc ribbon domain WM43_16905 PF00293 NUDIX domain WM43_16910 PF01208 Uroporphyrinogen decarboxylase (URO-D) WM43_16915 PF00480 ROK family WM43_16920 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WM43_16920 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WM43_16925 PF00162 Phosphoglycerate kinase WM43_16930 PF01116 Fructose-bisphosphate aldolase class-II WM43_16935 PF01266 FAD dependent oxidoreductase WM43_16950 PF11412 Disulphide bond corrector protein DsbC WM43_16950 PF02683 Cytochrome C biogenesis protein transmembrane region WM43_16955 PF03091 CutA1 divalent ion tolerance protein WM43_16970 PF03466 LysR substrate binding domain WM43_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_16975 PF01571 Aminomethyltransferase folate-binding domain WM43_16980 PF03937 Flavinator of succinate dehydrogenase WM43_16990 PF00890 FAD binding domain WM43_16990 PF02910 Fumarate reductase flavoprotein C-term WM43_16995 PF04542 Sigma-70 region 2 WM43_16995 PF08281 Sigma-70, region 4 WM43_17000 PF03873 Anti sigma-E protein RseA, C-terminal domain WM43_17000 PF03872 Anti sigma-E protein RseA, N-terminal domain WM43_17005 PF17188 MucB/RseB C-terminal domain WM43_17005 PF03888 MucB/RseB N-terminal domain WM43_17015 PF00009 Elongation factor Tu GTP binding domain WM43_17015 PF00679 Elongation factor G C-terminus WM43_17015 PF06421 GTP-binding protein LepA C-terminus WM43_17015 PF03144 Elongation factor Tu domain 2 WM43_17020 PF10502 Signal peptidase, peptidase S26 WM43_17025 PF00035 Double-stranded RNA binding motif WM43_17025 PF14622 Ribonuclease-III-like WM43_17030 PF07650 KH domain WM43_17030 PF01926 50S ribosome-binding GTPase WM43_17035 PF11967 Recombination protein O N terminal WM43_17035 PF02565 Recombination protein O C terminal WM43_17040 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ WM43_17045 PF00459 Inositol monophosphatase family WM43_17050 PF03795 YCII-related domain WM43_17055 PF04279 Intracellular septation protein A WM43_17060 PF00282 Pyridoxal-dependent decarboxylase conserved domain WM43_17065 PF03006 Haemolysin-III related WM43_17070 PF06826 Predicted Permease Membrane Region WM43_17070 PF02080 TrkA-C domain WM43_17085 PF03707 Bacterial signalling protein N terminal repeat WM43_17085 PF00990 Diguanylate cyclase, GGDEF domain WM43_17085 PF00563 EAL domain WM43_17090 PF06877 Regulator of ribonuclease activity B WM43_17110 PF00561 alpha/beta hydrolase fold WM43_17115 PF03150 Di-haem cytochrome c peroxidase WM43_17115 PF00034 Cytochrome c WM43_17120 PF00194 Eukaryotic-type carbonic anhydrase WM43_17125 PF04227 Indigoidine synthase A like protein WM43_17130 PF00294 pfkB family carbohydrate kinase WM43_17145 PF00582 Universal stress protein family WM43_17155 PF00267 Gram-negative porin WM43_17160 PF13276 HTH-like domain WM43_17160 PF00665 Integrase core domain WM43_17165 PF01527 Transposase WM43_17170 PF08241 Methyltransferase domain WM43_17175 PF00027 Cyclic nucleotide-binding domain WM43_17175 PF13545 Crp-like helix-turn-helix domain WM43_17180 PF02566 OsmC-like protein WM43_17195 PF00485 Phosphoribulokinase / Uridine kinase family WM43_17200 PF06794 Uncharacterised protein family (UPF0270) WM43_17205 PF01590 GAF domain WM43_17205 PF00563 EAL domain WM43_17205 PF00990 Diguanylate cyclase, GGDEF domain WM43_17205 PF00360 Phytochrome region WM43_17210 PF00561 alpha/beta hydrolase fold WM43_17215 PF00072 Response regulator receiver domain WM43_17215 PF01584 CheW-like domain WM43_17225 PF09526 Probable metal-binding protein (DUF2387) WM43_17230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase WM43_17245 PF03796 DnaB-like helicase C terminal domain WM43_17245 PF00772 DnaB-like helicase N terminal domain WM43_17250 PF01168 Alanine racemase, N-terminal domain WM43_17250 PF00842 Alanine racemase, C-terminal domain WM43_17255 PF01894 Uncharacterised protein family UPF0047 WM43_17260 PF03575 Peptidase family S51 WM43_17270 PF00005 ABC transporter WM43_17275 PF01032 FecCD transport family WM43_17285 PF06228 Haem utilisation ChuX/HutX WM43_17290 PF01243 Pyridoxamine 5'-phosphate oxidase WM43_17310 PF07715 TonB-dependent Receptor Plug Domain WM43_17310 PF00593 TonB dependent receptor WM43_17315 PF12832 MFS_1 like family WM43_17325 PF13443 Cro/C1-type HTH DNA-binding domain WM43_17335 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) WM43_17335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_17335 PF01627 Hpt domain WM43_17335 PF00512 His Kinase A (phospho-acceptor) domain WM43_17335 PF00072 Response regulator receiver domain WM43_17335 PF00672 HAMP domain WM43_17340 PF00704 Glycosyl hydrolases family 18 WM43_17340 PF08329 Chitinase A, N-terminal domain WM43_17345 PF00990 Diguanylate cyclase, GGDEF domain WM43_17345 PF08448 PAS fold WM43_17350 PF00704 Glycosyl hydrolases family 18 WM43_17350 PF08329 Chitinase A, N-terminal domain WM43_17355 PF12561 ToxR activated gene A lipoprotein domain WM43_17355 PF17945 Beta/Gamma crystallin WM43_17360 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading WM43_17360 PF18416 N-acetylglucosamine binding protein domain 2 WM43_17395 PF00704 Glycosyl hydrolases family 18 WM43_17395 PF06483 Chitinase C WM43_17400 PF00072 Response regulator receiver domain WM43_17400 PF01584 CheW-like domain WM43_17405 PF13472 GDSL-like Lipase/Acylhydrolase family WM43_17410 PF00005 ABC transporter WM43_17420 PF08338 Domain of unknown function (DUF1731) WM43_17420 PF01370 NAD dependent epimerase/dehydratase family WM43_17425 PF00563 EAL domain WM43_17425 PF12792 CSS motif domain associated with EAL WM43_17430 PF00155 Aminotransferase class I and II WM43_17435 PF02390 Putative methyltransferase WM43_17440 PF04320 Protein with unknown function (DUF469) WM43_17445 PF04960 Glutaminase WM43_17450 PF00581 Rhodanese-like domain WM43_17455 PF06004 Bacterial protein of unknown function (DUF903) WM43_17465 PF00994 Probable molybdopterin binding domain WM43_17475 PF06738 Putative threonine/serine exporter WM43_17480 PF12821 Threonine/Serine exporter, ThrE WM43_17485 PF00186 Dihydrofolate reductase WM43_17490 PF01507 Phosphoadenosine phosphosulfate reductase family WM43_17495 PF01077 Nitrite and sulphite reductase 4Fe-4S domain WM43_17495 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain WM43_17500 PF00258 Flavodoxin WM43_17500 PF00667 FAD binding domain WM43_17500 PF00175 Oxidoreductase NAD-binding domain WM43_17505 PF01336 OB-fold nucleic acid binding domain WM43_17505 PF00152 tRNA synthetases class II (D, K and N) WM43_17510 PF03462 PCRF domain WM43_17510 PF00472 RF-1 domain WM43_17515 PF00672 HAMP domain WM43_17515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_17515 PF02743 Cache domain WM43_17520 PF03616 Sodium/glutamate symporter WM43_17525 PF17763 Glutaminase/Asparaginase C-terminal domain WM43_17525 PF00710 Asparaginase, N-terminal WM43_17530 PF07023 Protein of unknown function (DUF1315) WM43_17535 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain WM43_17535 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain WM43_17550 PF04055 Radical SAM superfamily WM43_17550 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family WM43_17555 PF03099 Biotin/lipoate A/B protein ligase family WM43_17560 PF04359 Protein of unknown function (DUF493) WM43_17565 PF00768 D-alanyl-D-alanine carboxypeptidase WM43_17565 PF07943 Penicillin-binding protein 5, C-terminal domain WM43_17570 PF05036 Sporulation related domain WM43_17570 PF03330 Lytic transglycolase WM43_17575 PF13406 Transglycosylase SLT domain WM43_17580 PF01098 Cell cycle protein WM43_17585 PF00905 Penicillin binding protein transpeptidase domain WM43_17585 PF03717 Penicillin-binding Protein dimerisation domain WM43_17590 PF02590 Predicted SPOUT methyltransferase WM43_17600 PF01467 Cytidylyltransferase-like WM43_17615 PF00133 tRNA synthetases class I (I, L, M and V) WM43_17615 PF08264 Anticodon-binding domain of tRNA WM43_17615 PF13603 Leucyl-tRNA synthetase, Domain 2 WM43_17620 PF07295 Zinc-ribbon containing domain WM43_17625 PF01523 Putative modulator of DNA gyrase WM43_17630 PF01523 Putative modulator of DNA gyrase WM43_17635 PF00258 Flavodoxin WM43_17640 PF02899 Phage integrase, N-terminal SAM-like domain WM43_17640 PF00589 Phage integrase family WM43_17650 PF01741 Large-conductance mechanosensitive channel, MscL WM43_17660 PF17768 RecJ OB domain WM43_17660 PF02272 DHHA1 domain WM43_17660 PF01368 DHH family WM43_17665 PF00795 Carbon-nitrogen hydrolase WM43_17670 PF03471 Transporter associated domain WM43_17670 PF00571 CBS domain WM43_17675 PF02130 Uncharacterized protein family UPF0054 WM43_17680 PF02562 PhoH-like protein WM43_17685 PF00919 Uncharacterized protein family UPF0004 WM43_17685 PF01938 TRAM domain WM43_17685 PF04055 Radical SAM superfamily WM43_17690 PF01494 FAD binding domain WM43_17695 PF00857 Isochorismatase family WM43_17700 PF05230 MASE2 domain WM43_17700 PF00990 Diguanylate cyclase, GGDEF domain WM43_17705 PF03466 LysR substrate binding domain WM43_17705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_17715 PF13419 Haloacid dehalogenase-like hydrolase WM43_17730 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WM43_17730 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WM43_17740 PF01132 Elongation factor P (EF-P) OB domain WM43_17740 PF08207 Elongation factor P (EF-P) KOW-like domain WM43_17740 PF09285 Elongation factor P, C-terminal WM43_17750 PF00478 IMP dehydrogenase / GMP reductase domain WM43_17760 PF00512 His Kinase A (phospho-acceptor) domain WM43_17760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_17760 PF08521 Two-component sensor kinase N-terminal WM43_17765 PF00486 Transcriptional regulatory protein, C terminal WM43_17765 PF00072 Response regulator receiver domain WM43_17775 PF00106 short chain dehydrogenase WM43_17785 PF00501 AMP-binding enzyme WM43_17800 PF01266 FAD dependent oxidoreductase WM43_17810 PF00440 Bacterial regulatory proteins, tetR family WM43_17810 PF17932 Tetracyclin repressor-like, C-terminal domain WM43_17815 PF06224 Winged helix DNA-binding domain WM43_17825 PF01546 Peptidase family M20/M25/M40 WM43_17825 PF07687 Peptidase dimerisation domain WM43_17830 PF07670 Nucleoside recognition WM43_17835 PF07670 Nucleoside recognition WM43_17840 PF02313 Fumarate reductase subunit D WM43_17845 PF02300 Fumarate reductase subunit C WM43_17850 PF13183 4Fe-4S dicluster domain WM43_17850 PF13085 2Fe-2S iron-sulfur cluster binding domain WM43_17855 PF02910 Fumarate reductase flavoprotein C-term WM43_17855 PF00890 FAD binding domain WM43_17860 PF00672 HAMP domain WM43_17860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_17860 PF02743 Cache domain WM43_17865 PF03009 Glycerophosphoryl diester phosphodiesterase family WM43_17870 PF00924 Mechanosensitive ion channel WM43_17870 PF12794 Mechanosensitive ion channel inner membrane domain 1 WM43_17870 PF12795 Mechanosensitive ion channel porin domain WM43_17880 PF01551 Peptidase family M23 WM43_17880 PF08525 Opacity-associated protein A N-terminal motif WM43_17880 PF01476 LysM domain WM43_17890 PF03466 LysR substrate binding domain WM43_17890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_17905 PF00672 HAMP domain WM43_17905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_17910 PF03466 LysR substrate binding domain WM43_17910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_17915 PF17092 Penicillin-binding protein OB-like domain WM43_17915 PF00912 Transglycosylase WM43_17915 PF00905 Penicillin binding protein transpeptidase domain WM43_17940 PF00263 Bacterial type II and III secretion system protein WM43_17940 PF03958 Bacterial type II/III secretion system short domain WM43_17940 PF07660 Secretin and TonB N terminus short domain WM43_17940 PF11741 AMIN domain WM43_17945 PF01202 Shikimate kinase WM43_17950 PF01761 3-dehydroquinate synthase WM43_17960 PF02086 D12 class N6 adenine-specific DNA methyltransferase WM43_17965 PF00834 Ribulose-phosphate 3 epimerase family WM43_17970 PF13419 Haloacid dehalogenase-like hydrolase WM43_17975 PF00579 tRNA synthetases class I (W and Y) WM43_17985 PF00117 Glutamine amidotransferase class-I WM43_17990 PF00202 Aminotransferase class-III WM43_17995 PF04958 Arginine N-succinyltransferase beta subunit WM43_18000 PF00171 Aldehyde dehydrogenase family WM43_18015 PF13419 Haloacid dehalogenase-like hydrolase WM43_18020 PF07690 Major Facilitator Superfamily WM43_18025 PF10371 Domain of unknown function WM43_18025 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II WM43_18025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain WM43_18025 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase WM43_18025 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg WM43_18030 PF00128 Alpha amylase, catalytic domain WM43_18030 PF16657 Maltogenic Amylase, C-terminal domain WM43_18050 PF01048 Phosphorylase superfamily WM43_18055 PF04973 Nicotinamide mononucleotide transporter WM43_18060 PF02080 TrkA-C domain WM43_18060 PF03600 Citrate transporter WM43_18105 PF01926 50S ribosome-binding GTPase WM43_18105 PF06071 Protein of unknown function (DUF933) WM43_18110 PF01195 Peptidyl-tRNA hydrolase WM43_18115 PF02872 5'-nucleotidase, C-terminal domain WM43_18115 PF00149 Calcineurin-like phosphoesterase WM43_18120 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase WM43_18120 PF14572 Phosphoribosyl synthetase-associated domain WM43_18130 PF00288 GHMP kinases N terminal domain WM43_18130 PF08544 GHMP kinases C terminal WM43_18135 PF03550 Outer membrane lipoprotein LolB WM43_18140 PF01488 Shikimate / quinate 5-dehydrogenase WM43_18140 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain WM43_18140 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain WM43_18145 PF00472 RF-1 domain WM43_18145 PF03462 PCRF domain WM43_18150 PF17827 PrmC N-terminal domain WM43_18150 PF13847 Methyltransferase domain WM43_18160 PF13369 Transglutaminase-like superfamily WM43_18165 PF00793 DAHP synthetase I family WM43_18170 PF01228 Glycine radical WM43_18175 PF05598 Transposase domain (DUF772) WM43_18175 PF01609 Transposase DDE domain WM43_18185 PF03167 Uracil DNA glycosylase superfamily WM43_18195 PF01204 Trehalase WM43_18205 PF01161 Phosphatidylethanolamine-binding protein WM43_18225 PF00155 Aminotransferase class I and II WM43_18230 PF07690 Major Facilitator Superfamily WM43_18235 PF03466 LysR substrate binding domain WM43_18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_18240 PF00106 short chain dehydrogenase WM43_18245 PF01343 Peptidase family S49 WM43_18245 PF08496 Peptidase family S49 N-terminal WM43_18250 PF07690 Major Facilitator Superfamily WM43_18255 PF00990 Diguanylate cyclase, GGDEF domain WM43_18260 PF02635 DsrE/DsrF-like family WM43_18270 PF12838 4Fe-4S dicluster domain WM43_18300 PF04996 Succinylarginine dihydrolase WM43_18305 PF01751 Toprim domain WM43_18305 PF01131 DNA topoisomerase WM43_18305 PF08272 Topoisomerase I zinc-ribbon-like WM43_18305 PF01396 Topoisomerase DNA binding C4 zinc finger WM43_18315 PF08447 PAS fold WM43_18315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_18320 PF00728 Glycosyl hydrolase family 20, catalytic domain WM43_18320 PF02838 Glycosyl hydrolase family 20, domain 2 WM43_18325 PF01869 BadF/BadG/BcrA/BcrD ATPase family WM43_18335 PF00005 ABC transporter WM43_18335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_18340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_18340 PF00005 ABC transporter WM43_18345 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_18345 PF00528 Binding-protein-dependent transport system inner membrane component WM43_18350 PF00528 Binding-protein-dependent transport system inner membrane component WM43_18355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_18360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_18360 PF00512 His Kinase A (phospho-acceptor) domain WM43_18360 PF00072 Response regulator receiver domain WM43_18360 PF09308 LuxQ, periplasmic WM43_18380 PF10725 Protein of unknown function (DUF2517) WM43_18390 PF05114 Protein of unknown function (DUF692) WM43_18410 PF08447 PAS fold WM43_18410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_18410 PF13426 PAS domain WM43_18425 PF04632 Fusaric acid resistance protein family WM43_18430 PF00994 Probable molybdopterin binding domain WM43_18430 PF03454 MoeA C-terminal region (domain IV) WM43_18430 PF03453 MoeA N-terminal region (domain I and II) WM43_18435 PF12804 MobA-like NTP transferase domain WM43_18440 PF00005 ABC transporter WM43_18445 PF00528 Binding-protein-dependent transport system inner membrane component WM43_18450 PF12849 PBP superfamily domain WM43_18455 PF00158 Sigma-54 interaction domain WM43_18455 PF00072 Response regulator receiver domain WM43_18455 PF02954 Bacterial regulatory protein, Fis family WM43_18460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_18460 PF00512 His Kinase A (phospho-acceptor) domain WM43_18460 PF00989 PAS fold WM43_18470 PF02634 FdhD/NarQ family WM43_18475 PF05598 Transposase domain (DUF772) WM43_18475 PF01609 Transposase DDE domain WM43_18505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WM43_18505 PF00384 Molybdopterin oxidoreductase WM43_18505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_18505 PF12838 4Fe-4S dicluster domain WM43_18505 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WM43_18505 PF01568 Molydopterin dinucleotide binding domain WM43_18505 PF00384 Molybdopterin oxidoreductase WM43_18505 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_18505 PF01568 Molydopterin dinucleotide binding domain WM43_18505 PF12838 4Fe-4S dicluster domain WM43_18510 PF13247 4Fe-4S dicluster domain WM43_18530 PF03949 Malic enzyme, NAD binding domain WM43_18530 PF00390 Malic enzyme, N-terminal domain WM43_18535 PF05433 Glycine zipper 2TM domain WM43_18535 PF16998 17 kDa outer membrane surface antigen WM43_18545 PF00860 Permease family WM43_18550 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_18555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_18555 PF00672 HAMP domain WM43_18580 PF02685 Glucokinase WM43_18585 PF01418 Helix-turn-helix domain, rpiR family WM43_18585 PF01380 SIS domain WM43_18590 PF00224 Pyruvate kinase, barrel domain WM43_18590 PF02887 Pyruvate kinase, alpha/beta domain WM43_18600 PF07969 Amidohydrolase family WM43_18610 PF02049 Flagellar hook-basal body complex protein FliE WM43_18615 PF08345 Flagellar M-ring protein C-terminal WM43_18615 PF01514 Secretory protein of YscJ/FliF family WM43_18620 PF14842 FliG N-terminal domain WM43_18620 PF01706 FliG C-terminal domain WM43_18620 PF14841 FliG middle domain WM43_18630 PF18269 T3SS EscN ATPase C-terminal domain WM43_18630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain WM43_18650 PF02154 Flagellar motor switch protein FliM WM43_18650 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WM43_18655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term WM43_18660 PF04347 Flagellar biosynthesis protein, FliO WM43_18665 PF00813 FliP family WM43_18670 PF01313 Bacterial export proteins, family 3 WM43_18675 PF01311 Bacterial export proteins, family 1 WM43_18680 PF01312 FlhB HrpN YscU SpaS Family WM43_18685 PF00771 FHIPEP family WM43_18690 PF00448 SRP54-type protein, GTPase domain WM43_18695 PF10609 NUBPL iron-transfer P-loop NTPase WM43_18700 PF04545 Sigma-70, region 4 WM43_18700 PF04542 Sigma-70 region 2 WM43_18700 PF04539 Sigma-70 region 3 WM43_18705 PF00072 Response regulator receiver domain WM43_18710 PF04344 Chemotaxis phosphatase, CheZ WM43_18715 PF01584 CheW-like domain WM43_18715 PF02895 Signal transducing histidine kinase, homodimeric domain WM43_18715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_18715 PF01627 Hpt domain WM43_18715 PF07194 P2 response regulator binding domain WM43_18720 PF01339 CheB methylesterase WM43_18720 PF00072 Response regulator receiver domain WM43_18725 PF01618 MotA/TolQ/ExbB proton channel family WM43_18730 PF00691 OmpA family WM43_18730 PF13677 Membrane MotB of proton-channel complex MotA/MotB WM43_18735 PF13614 AAA domain WM43_18745 PF01584 CheW-like domain WM43_18755 PF00005 ABC transporter WM43_18760 PF03379 CcmB protein WM43_18765 PF01578 Cytochrome C assembly protein WM43_18770 PF04995 Heme exporter protein D (CcmD) WM43_18775 PF03100 CcmE WM43_18780 PF01578 Cytochrome C assembly protein WM43_18780 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal WM43_18785 PF08534 Redoxin WM43_18790 PF03918 Cytochrome C biogenesis protein WM43_18800 PF04333 MlaA lipoprotein WM43_18805 PF13006 Insertion element 4 transposase N-terminal WM43_18805 PF01609 Transposase DDE domain WM43_18810 PF02777 Iron/manganese superoxide dismutases, C-terminal domain WM43_18810 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain WM43_18815 PF00462 Glutaredoxin WM43_18825 PF03222 Tryptophan/tyrosine permease family WM43_18830 PF00291 Pyridoxal-phosphate dependent enzyme WM43_18840 PF00871 Acetokinase family WM43_18845 PF02901 Pyruvate formate lyase-like WM43_18845 PF01228 Glycine radical WM43_18850 PF01042 Endoribonuclease L-PSP WM43_18855 PF01189 16S rRNA methyltransferase RsmB/F WM43_18855 PF01029 NusB family WM43_18875 PF01609 Transposase DDE domain WM43_18875 PF13808 DDE_Tnp_1-associated WM43_18885 PF01527 Transposase WM43_18890 PF00665 Integrase core domain WM43_18890 PF13276 HTH-like domain WM43_18900 PF05598 Transposase domain (DUF772) WM43_18900 PF01609 Transposase DDE domain WM43_18910 PF01243 Pyridoxamine 5'-phosphate oxidase WM43_18910 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region WM43_18915 PF00043 Glutathione S-transferase, C-terminal domain WM43_18915 PF13417 Glutathione S-transferase, N-terminal domain WM43_18935 PF08007 Cupin superfamily protein WM43_18940 PF00206 Lyase WM43_18940 PF08328 Adenylosuccinate lyase C-terminal WM43_18945 PF04356 Protein of unknown function (DUF489) WM43_18955 PF00293 NUDIX domain WM43_18960 PF00849 RNA pseudouridylate synthase WM43_18970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WM43_18975 PF07690 Major Facilitator Superfamily WM43_18980 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit WM43_18980 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 WM43_18980 PF02378 Phosphotransferase system, EIIC WM43_19000 PF05598 Transposase domain (DUF772) WM43_19000 PF01609 Transposase DDE domain WM43_19010 PF02075 Crossover junction endodeoxyribonuclease RuvC WM43_19020 PF00873 AcrB/AcrD/AcrF family WM43_19025 PF00441 Acyl-CoA dehydrogenase, C-terminal domain WM43_19025 PF02770 Acyl-CoA dehydrogenase, middle domain WM43_19025 PF09317 Domain of unknown function (DUF1974) WM43_19025 PF02771 Acyl-CoA dehydrogenase, N-terminal domain WM43_19030 PF00440 Bacterial regulatory proteins, tetR family WM43_19045 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WM43_19045 PF01568 Molydopterin dinucleotide binding domain WM43_19045 PF00384 Molybdopterin oxidoreductase WM43_19045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_19045 PF00037 4Fe-4S binding domain WM43_19050 PF03707 Bacterial signalling protein N terminal repeat WM43_19050 PF00990 Diguanylate cyclase, GGDEF domain WM43_19050 PF00563 EAL domain WM43_19055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_19055 PF00072 Response regulator receiver domain WM43_19055 PF09456 RcsC Alpha-Beta-Loop (ABL) WM43_19055 PF00512 His Kinase A (phospho-acceptor) domain WM43_19065 PF01668 SmpB protein WM43_19070 PF03364 Polyketide cyclase / dehydrase and lipid transport WM43_19075 PF03658 RnfH family Ubiquitin WM43_19080 PF01546 Peptidase family M20/M25/M40 WM43_19080 PF07687 Peptidase dimerisation domain WM43_19085 PF02770 Acyl-CoA dehydrogenase, middle domain WM43_19085 PF00441 Acyl-CoA dehydrogenase, C-terminal domain WM43_19085 PF02771 Acyl-CoA dehydrogenase, N-terminal domain WM43_19085 PF09317 Domain of unknown function (DUF1974) WM43_19090 PF13580 SIS domain WM43_19095 PF13230 Glutamine amidotransferases class-II WM43_19105 PF01933 Uncharacterised protein family UPF0052 WM43_19125 PF00072 Response regulator receiver domain WM43_19125 PF00196 Bacterial regulatory proteins, luxR family WM43_19130 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term WM43_19130 PF07730 Histidine kinase WM43_19130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_19130 PF00672 HAMP domain WM43_19135 PF06463 Molybdenum Cofactor Synthesis C WM43_19135 PF04055 Radical SAM superfamily WM43_19140 PF12838 4Fe-4S dicluster domain WM43_19140 PF13187 4Fe-4S dicluster domain WM43_19150 PF00384 Molybdopterin oxidoreductase WM43_19150 PF10518 TAT (twin-arginine translocation) pathway signal sequence WM43_19150 PF01568 Molydopterin dinucleotide binding domain WM43_19150 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_19155 PF12838 4Fe-4S dicluster domain WM43_19155 PF12800 4Fe-4S binding domain WM43_19160 PF12801 4Fe-4S binding domain WM43_19160 PF12837 4Fe-4S binding domain WM43_19165 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) WM43_19170 PF03264 NapC/NirT cytochrome c family, N-terminal region WM43_19175 PF00994 Probable molybdopterin binding domain WM43_19180 PF01967 MoaC family WM43_19185 PF02597 ThiS family WM43_19190 PF02391 MoaE protein WM43_19200 PF00528 Binding-protein-dependent transport system inner membrane component WM43_19205 PF03459 TOBE domain WM43_19205 PF00005 ABC transporter WM43_19210 PF00561 alpha/beta hydrolase fold WM43_19215 PF00899 ThiF family WM43_19220 PF00994 Probable molybdopterin binding domain WM43_19220 PF03454 MoeA C-terminal region (domain IV) WM43_19220 PF03453 MoeA N-terminal region (domain I and II) WM43_19225 PF01227 GTP cyclohydrolase I WM43_19230 PF00672 HAMP domain WM43_19230 PF17200 Single Cache domain 2 WM43_19230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_19235 PF01268 Formate--tetrahydrofolate ligase WM43_19245 PF03466 LysR substrate binding domain WM43_19245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_19250 PF04264 YceI-like domain WM43_19260 PF05221 S-adenosyl-L-homocysteine hydrolase WM43_19260 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain WM43_19275 PF01546 Peptidase family M20/M25/M40 WM43_19275 PF07687 Peptidase dimerisation domain WM43_19280 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain WM43_19280 PF17944 Arginine decarboxylase C-terminal helical extension WM43_19280 PF17810 Arginine decarboxylase helical bundle domain WM43_19290 PF14864 Alkyl sulfatase C-terminal WM43_19290 PF14863 Alkyl sulfatase dimerisation WM43_19290 PF00753 Metallo-beta-lactamase superfamily WM43_19305 PF00672 HAMP domain WM43_19305 PF12729 Four helix bundle sensory module for signal transduction WM43_19305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_19315 PF01042 Endoribonuclease L-PSP WM43_19320 PF03313 Serine dehydratase alpha chain WM43_19325 PF08348 YheO-like PAS domain WM43_19325 PF13309 HTH domain WM43_19330 PF00300 Histidine phosphatase superfamily (branch 1) WM43_19335 PF00672 HAMP domain WM43_19335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_19335 PF12729 Four helix bundle sensory module for signal transduction WM43_19340 PF07055 Enoyl reductase FAD binding domain WM43_19340 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase WM43_19340 PF12241 Trans-2-enoyl-CoA reductase catalytic region WM43_19345 PF03606 C4-dicarboxylate anaerobic carrier WM43_19350 PF00155 Aminotransferase class I and II WM43_19360 PF00230 Major intrinsic protein WM43_19365 PF01464 Transglycosylase SLT domain WM43_19365 PF10145 Phage-related minor tail protein WM43_19365 PF01551 Peptidase family M23 WM43_19380 PF13396 Phospholipase_D-nuclease N-terminal WM43_19380 PF13091 PLD-like domain WM43_19390 PF00551 Formyl transferase WM43_19390 PF01842 ACT domain WM43_19395 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase WM43_19405 PF00085 Thioredoxin WM43_19410 PF01648 4'-phosphopantetheinyl transferase superfamily WM43_19415 PF00877 NlpC/P60 family WM43_19420 PF05971 RNA methyltransferase WM43_19430 PF00939 Sodium:sulfate symporter transmembrane region WM43_19440 PF03734 L,D-transpeptidase catalytic domain WM43_19440 PF01476 LysM domain WM43_19440 PF17969 L,D-transpeptidase C-terminal domain WM43_19450 PF00176 SNF2 family N-terminal domain WM43_19450 PF00271 Helicase conserved C-terminal domain WM43_19450 PF04434 SWIM zinc finger WM43_19455 PF05472 DNA replication terminus site-binding protein (Ter protein) WM43_19465 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family WM43_19470 PF01476 LysM domain WM43_19470 PF01464 Transglycosylase SLT domain WM43_19475 PF00753 Metallo-beta-lactamase superfamily WM43_19475 PF16123 Hydroxyacylglutathione hydrolase C-terminus WM43_19480 PF08241 Methyltransferase domain WM43_19485 PF00075 RNase H WM43_19490 PF00929 Exonuclease WM43_19505 PF08021 Siderophore-interacting FAD-binding domain WM43_19505 PF04954 Siderophore-interacting protein WM43_19510 PF00593 TonB dependent receptor WM43_19510 PF07715 TonB-dependent Receptor Plug Domain WM43_19515 PF01032 FecCD transport family WM43_19520 PF01032 FecCD transport family WM43_19525 PF00005 ABC transporter WM43_19540 PF00873 AcrB/AcrD/AcrF family WM43_19545 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_19545 PF00529 HlyD membrane-fusion protein of T1SS WM43_19555 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) WM43_19570 PF00873 AcrB/AcrD/AcrF family WM43_19575 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion WM43_19580 PF03372 Endonuclease/Exonuclease/phosphatase family WM43_19595 PF02424 ApbE family WM43_19600 PF00127 Copper binding proteins, plastocyanin/azurin family WM43_19610 PF04337 Protein of unknown function, DUF480 WM43_19615 PF00990 Diguanylate cyclase, GGDEF domain WM43_19615 PF03707 Bacterial signalling protein N terminal repeat WM43_19615 PF00563 EAL domain WM43_19615 PF13188 PAS domain WM43_19625 PF04325 Protein of unknown function (DUF465) WM43_19635 PF01554 MatE WM43_19655 PF00465 Iron-containing alcohol dehydrogenase WM43_19665 PF00440 Bacterial regulatory proteins, tetR family WM43_19665 PF08359 YsiA-like protein, C-terminal region WM43_19670 PF00171 Aldehyde dehydrogenase family WM43_19680 PF01156 Inosine-uridine preferring nucleoside hydrolase WM43_19690 PF13442 Cytochrome C oxidase, cbb3-type, subunit III WM43_19690 PF00034 Cytochrome c WM43_19700 PF05656 Protein of unknown function (DUF805) WM43_19715 PF00582 Universal stress protein family WM43_19720 PF00916 Sulfate permease family WM43_19720 PF01740 STAS domain WM43_19735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_19735 PF00672 HAMP domain WM43_19740 PF01238 Phosphomannose isomerase type I WM43_19745 PF12833 Helix-turn-helix domain WM43_19750 PF00180 Isocitrate/isopropylmalate dehydrogenase WM43_19755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_19755 PF03466 LysR substrate binding domain WM43_19760 PF00877 NlpC/P60 family WM43_19765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_19765 PF03466 LysR substrate binding domain WM43_19770 PF00578 AhpC/TSA family WM43_19770 PF10417 C-terminal domain of 1-Cys peroxiredoxin WM43_19790 PF08003 Protein of unknown function (DUF1698) WM43_19795 PF13649 Methyltransferase domain WM43_19800 PF01904 Protein of unknown function DUF72 WM43_19805 PF02938 GAD domain WM43_19805 PF00152 tRNA synthetases class II (D, K and N) WM43_19805 PF01336 OB-fold nucleic acid binding domain WM43_19810 PF01709 Transcriptional regulator WM43_19815 PF00171 Aldehyde dehydrogenase family WM43_19815 PF00465 Iron-containing alcohol dehydrogenase WM43_19820 PF01914 MarC family integral membrane protein WM43_19825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_19830 PF00528 Binding-protein-dependent transport system inner membrane component WM43_19835 PF12911 N-terminal TM domain of oligopeptide transport permease C WM43_19835 PF00528 Binding-protein-dependent transport system inner membrane component WM43_19840 PF00005 ABC transporter WM43_19840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_19845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region WM43_19845 PF00005 ABC transporter WM43_19850 PF03741 Integral membrane protein TerC family WM43_19855 PF01168 Alanine racemase, N-terminal domain WM43_19855 PF00842 Alanine racemase, C-terminal domain WM43_19860 PF04191 Phospholipid methyltransferase WM43_19865 PF00437 Type II/IV secretion system protein WM43_19880 PF01032 FecCD transport family WM43_19885 PF00005 ABC transporter WM43_19890 PF00793 DAHP synthetase I family WM43_19895 PF01219 Prokaryotic diacylglycerol kinase WM43_19900 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain WM43_19900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain WM43_19900 PF01842 ACT domain WM43_19905 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) WM43_19910 PF01812 5-formyltetrahydrofolate cyclo-ligase family WM43_19925 PF01113 Dihydrodipicolinate reductase, N-terminus WM43_19925 PF05173 Dihydrodipicolinate reductase, C-terminus WM43_19930 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain WM43_19930 PF00117 Glutamine amidotransferase class-I WM43_19935 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain WM43_19935 PF02142 MGS-like domain WM43_19935 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain WM43_19940 PF07759 Protein of unknown function (DUF1615) WM43_19945 PF01817 Chorismate mutase type II WM43_19945 PF02153 Prephenate dehydrogenase WM43_19950 PF00793 DAHP synthetase I family WM43_19955 PF00483 Nucleotidyl transferase WM43_19960 PF07549 SecD/SecF GG Motif WM43_19960 PF02355 Protein export membrane protein WM43_19965 PF07549 SecD/SecF GG Motif WM43_19965 PF02355 Protein export membrane protein WM43_19965 PF13721 SecD export protein N-terminal TM region WM43_20000 PF01230 HIT domain WM43_20005 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_20005 PF00672 HAMP domain WM43_20015 PF01979 Amidohydrolase family WM43_20030 PF00375 Sodium:dicarboxylate symporter family WM43_20035 PF00672 HAMP domain WM43_20035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_20035 PF12729 Four helix bundle sensory module for signal transduction WM43_20045 PF05661 Protein of unknown function (DUF808) WM43_20050 PF08439 Oligopeptidase F WM43_20050 PF01432 Peptidase family M3 WM43_20055 PF00860 Permease family WM43_20060 PF05728 Uncharacterised protein family (UPF0227) WM43_20065 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_20075 PF04055 Radical SAM superfamily WM43_20080 PF03707 Bacterial signalling protein N terminal repeat WM43_20080 PF00990 Diguanylate cyclase, GGDEF domain WM43_20080 PF00563 EAL domain WM43_20085 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_20085 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_20095 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain WM43_20095 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain WM43_20095 PF11974 Bacterial alpha-2-macroglobulin MG3 domain WM43_20095 PF00207 Alpha-2-macroglobulin family WM43_20095 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain WM43_20095 PF17962 Bacterial macroglobulin domain 6 WM43_20095 PF01835 MG2 domain WM43_20095 PF07703 Alpha-2-macroglobulin bait region domain WM43_20095 PF07678 A-macroglobulin TED domain WM43_20100 PF00905 Penicillin binding protein transpeptidase domain WM43_20100 PF00912 Transglycosylase WM43_20100 PF06832 Penicillin-Binding Protein C-terminus Family WM43_20110 PF12167 Arm DNA-binding domain WM43_20110 PF00589 Phage integrase family WM43_20180 PF12684 PDDEXK-like domain of unknown function (DUF3799) WM43_20180 PF06630 Enterobacterial exodeoxyribonuclease VIII WM43_20235 PF00145 C-5 cytosine-specific DNA methylase WM43_20440 PF02926 THUMP domain WM43_20440 PF02568 Thiamine biosynthesis protein (ThiI) WM43_20450 PF03458 UPF0126 domain WM43_20455 PF07196 Flagellin hook IN motif WM43_20455 PF00669 Bacterial flagellin N-terminal helical region WM43_20455 PF00700 Bacterial flagellin C-terminal helical region WM43_20460 PF03646 FlaG protein WM43_20465 PF07196 Flagellin hook IN motif WM43_20465 PF02465 Flagellar hook-associated protein 2 N-terminus WM43_20465 PF07195 Flagellar hook-associated protein 2 C-terminus WM43_20470 PF02561 Flagellar protein FliS WM43_20495 PF13358 DDE superfamily endonuclease WM43_20500 PF01497 Periplasmic binding protein WM43_20510 PF01048 Phosphorylase superfamily WM43_20515 PF02535 ZIP Zinc transporter WM43_20520 PF01609 Transposase DDE domain WM43_20520 PF13006 Insertion element 4 transposase N-terminal WM43_20525 PF00459 Inositol monophosphatase family WM43_20535 PF01385 Probable transposase WM43_20535 PF07282 Putative transposase DNA-binding domain WM43_20535 PF12323 Helix-turn-helix domain WM43_20545 PF02798 Glutathione S-transferase, N-terminal domain WM43_20545 PF00043 Glutathione S-transferase, C-terminal domain WM43_20550 PF07690 Major Facilitator Superfamily WM43_20560 PF05164 Cell division protein ZapA WM43_20565 PF03695 Uncharacterised protein family (UPF0149) WM43_20570 PF01494 FAD binding domain WM43_20575 PF01494 FAD binding domain WM43_20580 PF08669 Glycine cleavage T-protein C-terminal barrel domain WM43_20580 PF01571 Aminomethyltransferase folate-binding domain WM43_20585 PF01597 Glycine cleavage H-protein WM43_20590 PF02347 Glycine cleavage system P-protein WM43_20600 PF02384 N-6 DNA Methylase WM43_20600 PF12161 HsdM N-terminal domain WM43_20605 PF01420 Type I restriction modification DNA specificity domain WM43_20610 PF03695 Uncharacterised protein family (UPF0149) WM43_20610 PF02810 SEC-C motif WM43_20615 PF17868 AAA lid domain WM43_20615 PF12592 Protein of unknown function (DUF3763) WM43_20615 PF07728 AAA domain (dynein-related subfamily) WM43_20620 PF05762 VWA domain containing CoxE-like protein WM43_20625 PF11867 Domain of unknown function (DUF3387) WM43_20625 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) WM43_20625 PF18766 SWI2/SNF2 ATPase WM43_20685 PF00176 SNF2 family N-terminal domain WM43_20685 PF12419 SNF2 Helicase protein WM43_20685 PF00271 Helicase conserved C-terminal domain WM43_20695 PF00665 Integrase core domain WM43_20700 PF01695 IstB-like ATP binding protein WM43_20705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain WM43_20705 PF08447 PAS fold WM43_20725 PF00324 Amino acid permease WM43_20735 PF03618 Kinase/pyrophosphorylase WM43_20740 PF02896 PEP-utilising enzyme, TIM barrel domain WM43_20740 PF00391 PEP-utilising enzyme, mobile domain WM43_20740 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain WM43_20750 PF00082 Subtilase family WM43_20750 PF01483 Proprotein convertase P-domain WM43_20755 PF03180 NLPA lipoprotein WM43_20760 PF11893 Domain of unknown function (DUF3413) WM43_20760 PF00884 Sulfatase WM43_20765 PF07208 Protein of unknown function (DUF1414) WM43_20770 PF04245 37-kD nucleoid-associated bacterial protein WM43_20775 PF01547 Bacterial extracellular solute-binding protein WM43_20780 PF00528 Binding-protein-dependent transport system inner membrane component WM43_20780 PF14785 Maltose transport system permease protein MalF P2 domain WM43_20785 PF00528 Binding-protein-dependent transport system inner membrane component WM43_20790 PF08402 TOBE domain WM43_20790 PF00005 ABC transporter WM43_20795 PF03976 Polyphosphate kinase 2 (PPK2) WM43_20800 PF00561 alpha/beta hydrolase fold WM43_20810 PF01594 AI-2E family transporter WM43_20815 PF01206 Sulfurtransferase TusA WM43_20820 PF01435 Peptidase family M48 WM43_20820 PF07720 Tetratricopeptide repeat WM43_20825 PF00578 AhpC/TSA family WM43_20830 PF03960 ArsC family WM43_20840 PF04336 Acyl carrier protein phosphodiesterase WM43_20845 PF01979 Amidohydrolase family WM43_20850 PF03956 Lysine exporter LysO WM43_20855 PF00005 ABC transporter WM43_20860 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_20865 PF00528 Binding-protein-dependent transport system inner membrane component WM43_20870 PF00528 Binding-protein-dependent transport system inner membrane component WM43_20880 PF00849 RNA pseudouridylate synthase WM43_20890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily WM43_20895 PF04209 homogentisate 1,2-dioxygenase WM43_20905 PF02798 Glutathione S-transferase, N-terminal domain WM43_20905 PF14497 Glutathione S-transferase, C-terminal domain WM43_20910 PF01970 Tripartite tricarboxylate transporter TctA family WM43_20925 PF00486 Transcriptional regulatory protein, C terminal WM43_20925 PF00072 Response regulator receiver domain WM43_20930 PF08521 Two-component sensor kinase N-terminal WM43_20930 PF00512 His Kinase A (phospho-acceptor) domain WM43_20930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase WM43_20935 PF04226 Transglycosylase associated protein WM43_20940 PF18650 Immunomodulating metalloprotease N-terminal domain WM43_20940 PF13402 Peptidase M60, enhancin and enhancin-like WM43_20940 PF18642 Immunomodulating metalloprotease helical domain WM43_20945 PF00149 Calcineurin-like phosphoesterase WM43_20955 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD WM43_20960 PF01406 tRNA synthetases class I (C) catalytic domain WM43_20960 PF09190 DALR domain WM43_20970 PF01609 Transposase DDE domain WM43_20970 PF13808 DDE_Tnp_1-associated WM43_20985 PF13276 HTH-like domain WM43_20985 PF13333 Integrase core domain WM43_20985 PF00665 Integrase core domain WM43_21030 PF01169 Uncharacterized protein family UPF0016 WM43_21035 PF01253 Translation initiation factor SUI1 WM43_21045 PF02421 Ferrous iron transport protein B WM43_21045 PF07670 Nucleoside recognition WM43_21045 PF07664 Ferrous iron transport protein B C terminus WM43_21060 PF00270 DEAD/DEAH box helicase WM43_21060 PF00271 Helicase conserved C-terminal domain WM43_21065 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster WM43_21065 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_21070 PF04898 Glutamate synthase central domain WM43_21070 PF01645 Conserved region in glutamate synthase WM43_21070 PF01493 GXGXG motif WM43_21070 PF00310 Glutamine amidotransferases class-II WM43_21080 PF16199 Radical_SAM C-terminal domain WM43_21080 PF04055 Radical SAM superfamily WM43_21085 PF00005 ABC transporter WM43_21085 PF00664 ABC transporter transmembrane region WM43_21085 PF03412 Peptidase C39 family WM43_21130 PF13192 Thioredoxin domain WM43_21130 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_21135 PF10417 C-terminal domain of 1-Cys peroxiredoxin WM43_21135 PF00578 AhpC/TSA family WM43_21140 PF00571 CBS domain WM43_21145 PF02547 Queuosine biosynthesis protein WM43_21150 PF01702 Queuine tRNA-ribosyltransferase WM43_21155 PF02699 Preprotein translocase subunit WM43_21160 PF13721 SecD export protein N-terminal TM region WM43_21160 PF02355 Protein export membrane protein WM43_21160 PF07549 SecD/SecF GG Motif WM43_21165 PF07549 SecD/SecF GG Motif WM43_21165 PF02355 Protein export membrane protein WM43_21175 PF07719 Tetratricopeptide repeat WM43_21175 PF13181 Tetratricopeptide repeat WM43_21200 PF00588 SpoU rRNA Methylase family WM43_21205 PF02082 Transcriptional regulator WM43_21210 PF00266 Aminotransferase class-V WM43_21215 PF01592 NifU-like N terminal domain WM43_21220 PF01521 Iron-sulphur cluster biosynthesis WM43_21225 PF00226 DnaJ domain WM43_21225 PF07743 HSCB C-terminal oligomerisation domain WM43_21230 PF00012 Hsp70 protein WM43_21235 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_21240 PF00883 Cytosol aminopeptidase family, catalytic domain WM43_21240 PF12404 Peptidase WM43_21245 PF12404 Peptidase WM43_21245 PF00883 Cytosol aminopeptidase family, catalytic domain WM43_21250 PF00334 Nucleoside diphosphate kinase WM43_21255 PF04055 Radical SAM superfamily WM43_21265 PF13464 Domain of unknown function (DUF4115) WM43_21275 PF03129 Anticodon binding domain WM43_21275 PF13393 Histidyl-tRNA synthetase WM43_21280 PF09976 Tetratricopeptide repeat-like domain WM43_21285 PF13360 PQQ-like domain WM43_21290 PF01926 50S ribosome-binding GTPase WM43_21290 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal WM43_21295 PF07191 zinc-ribbons WM43_21300 PF01464 Transglycosylase SLT domain WM43_21300 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_21305 PF02769 AIR synthase related protein, C-terminal domain WM43_21305 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal WM43_21305 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain WM43_21310 PF01966 HD domain WM43_21315 PF00072 Response regulator receiver domain WM43_21325 PF00361 Proton-conducting membrane transporter WM43_21330 PF00361 Proton-conducting membrane transporter WM43_21335 PF00361 Proton-conducting membrane transporter WM43_21335 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus WM43_21340 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L WM43_21345 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 WM43_21350 PF12838 4Fe-4S dicluster domain WM43_21355 PF00146 NADH dehydrogenase WM43_21360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region WM43_21360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain WM43_21360 PF00384 Molybdopterin oxidoreductase WM43_21365 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit WM43_21365 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region WM43_21375 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit WM43_21375 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit WM43_21380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit WM43_21385 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 WM43_21405 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain WM43_21405 PF00326 Prolyl oligopeptidase family WM43_21410 PF07715 TonB-dependent Receptor Plug Domain WM43_21410 PF00593 TonB dependent receptor WM43_21415 PF00691 OmpA family WM43_21415 PF13677 Membrane MotB of proton-channel complex MotA/MotB WM43_21420 PF01618 MotA/TolQ/ExbB proton channel family WM43_21425 PF01527 Transposase WM43_21430 PF00665 Integrase core domain WM43_21430 PF13276 HTH-like domain WM43_21435 PF01618 MotA/TolQ/ExbB proton channel family WM43_21450 PF04536 TPM domain WM43_21460 PF03411 Penicillin-insensitive murein endopeptidase WM43_21465 PF00528 Binding-protein-dependent transport system inner membrane component WM43_21470 PF00497 Bacterial extracellular solute-binding proteins, family 3 WM43_21475 PF00528 Binding-protein-dependent transport system inner membrane component WM43_21480 PF00005 ABC transporter WM43_21490 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) WM43_21495 PF00248 Aldo/keto reductase family WM43_21505 PF00106 short chain dehydrogenase WM43_21510 PF01212 Beta-eliminating lyase WM43_21520 PF00072 Response regulator receiver domain WM43_21525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_21525 PF03466 LysR substrate binding domain WM43_21530 PF03707 Bacterial signalling protein N terminal repeat WM43_21530 PF13188 PAS domain WM43_21530 PF00563 EAL domain WM43_21530 PF00990 Diguanylate cyclase, GGDEF domain WM43_21535 PF03806 AbgT putative transporter family WM43_21540 PF00881 Nitroreductase family WM43_21555 PF07690 Major Facilitator Superfamily WM43_21560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_21560 PF03466 LysR substrate binding domain WM43_21565 PF03466 LysR substrate binding domain WM43_21565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_21570 PF00925 GTP cyclohydrolase II WM43_21575 PF02224 Cytidylate kinase WM43_21580 PF00575 S1 RNA binding domain WM43_21585 PF00216 Bacterial DNA-binding protein WM43_21595 PF18073 Rubredoxin metal binding domain WM43_21600 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family WM43_21615 PF06508 Queuosine biosynthesis protein QueC WM43_21645 PF00111 2Fe-2S iron-sulfur cluster binding domain WM43_21755 PF01548 Transposase WM43_21755 PF02371 Transposase IS116/IS110/IS902 family WM43_21760 PF00376 MerR family regulatory protein WM43_21760 PF09278 MerR, DNA binding WM43_21765 PF02411 MerT mercuric transport protein WM43_21770 PF00403 Heavy-metal-associated domain WM43_21775 PF03203 MerC mercury resistance protein WM43_21780 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain WM43_21780 PF00403 Heavy-metal-associated domain WM43_21780 PF07992 Pyridine nucleotide-disulphide oxidoreductase WM43_21785 PF13411 MerR HTH family regulatory protein WM43_21790 PF05052 MerE protein WM43_21795 PF13188 PAS domain WM43_21795 PF00563 EAL domain WM43_21795 PF03707 Bacterial signalling protein N terminal repeat WM43_21795 PF00990 Diguanylate cyclase, GGDEF domain WM43_21805 PF13610 DDE domain WM43_21810 PF01636 Phosphotransferase enzyme family WM43_21825 PF13610 DDE domain WM43_21830 PF03551 Transcriptional regulator PadR-like family WM43_21845 PF00809 Pterin binding enzyme WM43_21850 PF00893 Small Multidrug Resistance protein WM43_21855 PF13427 Domain of unknown function (DUF4111) WM43_21855 PF01909 Nucleotidyltransferase domain WM43_21860 PF00186 Dihydrofolate reductase WM43_21865 PF00589 Phage integrase family WM43_21865 PF13495 Phage integrase, N-terminal SAM-like domain WM43_21870 PF00239 Resolvase, N terminal domain WM43_21870 PF02796 Helix-turn-helix domain of resolvase WM43_21875 PF01526 Tn3 transposase DDE domain WM43_21875 PF13700 Domain of unknown function (DUF4158) WM43_21880 PF02371 Transposase IS116/IS110/IS902 family WM43_21880 PF01548 Transposase WM43_21920 PF02899 Phage integrase, N-terminal SAM-like domain WM43_21920 PF00589 Phage integrase family WM43_21960 PF06122 Conjugative relaxosome accessory transposon protein WM43_22060 PF01343 Peptidase family S49 WM43_22105 PF00565 Staphylococcal nuclease homologue WM43_22110 PF00216 Bacterial DNA-binding protein WM43_22175 PF00004 ATPase family associated with various cellular activities (AAA) WM43_22175 PF01434 Peptidase family M41 WM43_22175 PF17862 AAA+ lid domain WM43_22220 PF04335 VirB8 protein WM43_22230 PF03743 Bacterial conjugation TrbI-like protein WM43_22235 PF00437 Type II/IV secretion system protein WM43_22240 PF13610 DDE domain WM43_22245 PF00207 Alpha-2-macroglobulin family WM43_22245 PF01835 MG2 domain WM43_22245 PF17962 Bacterial macroglobulin domain 6 WM43_22245 PF11974 Bacterial alpha-2-macroglobulin MG3 domain WM43_22245 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain WM43_22245 PF07703 Alpha-2-macroglobulin bait region domain WM43_22245 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain WM43_22250 PF04024 PspC domain WM43_22255 PF06667 Phage shock protein B WM43_22260 PF04012 PspA/IM30 family WM43_22265 PF02954 Bacterial regulatory protein, Fis family WM43_22265 PF00158 Sigma-54 interaction domain WM43_22270 PF13599 Pentapeptide repeats (9 copies) WM43_22280 PF02464 Competence-damaged protein WM43_22295 PF04076 Bacterial OB fold (BOF) protein WM43_22300 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle WM43_22305 PF00528 Binding-protein-dependent transport system inner membrane component WM43_22320 PF00809 Pterin binding enzyme WM43_22325 PF00893 Small Multidrug Resistance protein WM43_22330 PF05139 Erythromycin esterase WM43_22345 PF02522 Aminoglycoside 3-N-acetyltransferase WM43_22355 PF05139 Erythromycin esterase WM43_22365 PF00589 Phage integrase family WM43_22365 PF13495 Phage integrase, N-terminal SAM-like domain WM43_22370 PF13610 DDE domain WM43_22380 PF08220 DeoR-like helix-turn-helix domain WM43_22380 PF00455 DeoR C terminal sensor domain WM43_22385 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase WM43_22385 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase WM43_22395 PF00596 Class II Aldolase and Adducin N-terminal domain WM43_22400 PF13610 DDE domain WM43_22405 PF13091 PLD-like domain WM43_22405 PF13396 Phospholipase_D-nuclease N-terminal WM43_22415 PF13610 DDE domain WM43_22420 PF00665 Integrase core domain WM43_22425 PF01695 IstB-like ATP binding protein WM43_22435 PF00589 Phage integrase family WM43_22435 PF13495 Phage integrase, N-terminal SAM-like domain WM43_22440 PF13610 DDE domain WM43_22445 PF00440 Bacterial regulatory proteins, tetR family WM43_22445 PF02909 Tetracyclin repressor-like, C-terminal domain WM43_22450 PF07690 Major Facilitator Superfamily WM43_22455 PF08240 Alcohol dehydrogenase GroES-like domain WM43_22455 PF00107 Zinc-binding dehydrogenase WM43_22465 PF13610 DDE domain WM43_22475 PF07690 Major Facilitator Superfamily WM43_22480 PF03466 LysR substrate binding domain WM43_22480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family WM43_22490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I WM43_22490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II WM43_22490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III WM43_22490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain WM43_22495 PF00809 Pterin binding enzyme WM43_22505 PF13614 AAA domain WM43_22510 PF02195 ParB-like nuclease domain WM43_22510 PF06613 KorB C-terminal beta-barrel domain WM43_22510 PF08535 KorB domain WM43_22550 PF00145 C-5 cytosine-specific DNA methylase WM43_22580 PF01131 DNA topoisomerase WM43_22580 PF01751 Toprim domain WM43_22670 PF10411 Disulfide bond isomerase protein N-terminus WM43_22670 PF13098 Thioredoxin-like domain WM43_22695 PF08447 PAS fold WM43_22695 PF08448 PAS fold WM43_22695 PF00563 EAL domain WM43_22695 PF00990 Diguanylate cyclase, GGDEF domain WM43_22700 PF06834 TraU protein WM43_22730 PF08406 CbbQ/NirQ/NorQ C-terminal WM43_22730 PF07728 AAA domain (dynein-related subfamily) WM43_22740 PF00436 Single-strand binding protein family