B565_0001 SM00382 ATPases associated with a variety of cellular activities B565_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain B565_0002 SM00480 DNA polymerase III beta subunit B565_0004 SM00387 Histidine kinase-like ATPases B565_0004 SM00433 TopoisomeraseII B565_0005 SM00342 helix_turn_helix, arabinose operon control protein B565_0010 SM00342 helix_turn_helix, arabinose operon control protein B565_0012 SM00448 cheY-homologous receiver domain B565_0012 SM00862 Transcriptional regulatory protein, C terminal B565_0013 SM00387 Histidine kinase-like ATPases B565_0013 SM00388 His Kinase A (phosphoacceptor) domain B565_0018 SM00091 PAS domain B565_0018 SM00387 Histidine kinase-like ATPases B565_0022 SM00458 Ricin-type beta-trefoil B565_0027 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_0027 SM00954 Region found in RelA / SpoT proteins B565_0028 SM01409 B565_0028 B565_0029 SM00072 Guanylate kinase homologues. B565_0033 SM00267 diguanylate cyclase B565_0044 SM00387 Histidine kinase-like ATPases B565_0045 SM00448 cheY-homologous receiver domain B565_0045 SM00850 LytTr DNA-binding domain B565_0048 SM01001 AIR carboxylase B565_0054 SM00360 RNA recognition motif B565_0059 SM00052 Putative diguanylate phosphodiesterase B565_0059 SM00267 diguanylate cyclase B565_0061 SM00829 Enoylreductase B565_0071 SM00342 helix_turn_helix, arabinose operon control protein B565_0082 SM00382 ATPases associated with a variety of cellular activities B565_0088 SM00924 MgtE intracellular N domain B565_0095 SM00382 ATPases associated with a variety of cellular activities B565_0098 SM00382 ATPases associated with a variety of cellular activities B565_0098 SM01086 C-terminal, D2-small domain, of ClpB protein B565_0101 SM00836 DALR anticodon binding domain B565_0101 SM01016 Arginyl tRNA synthetase N terminal dom B565_0102 SM00464 Found in ATP-dependent protease La (LON) B565_0110 SM00354 helix_turn _helix lactose operon repressor B565_0111 SM01038 Beta galactosidase small chain B565_0113 SM00382 ATPases associated with a variety of cellular activities B565_0115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0120 SM00642 Alpha-amylase domain B565_0129 SM01230 B565_0129 B565_0133 SM00382 ATPases associated with a variety of cellular activities B565_0139 SM00341 Helicase and RNase D C-terminal B565_0139 SM00487 DEAD-like helicases superfamily B565_0139 SM00490 helicase superfamily c-terminal domain B565_0139 SM00956 B565_0139 B565_0145 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0145 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0145 SM01358 B565_0145 B565_0148 SM00487 DEAD-like helicases superfamily B565_0148 SM00490 helicase superfamily c-terminal domain B565_0152 SM00919 Malic enzyme, NAD binding domain B565_0152 SM01274 B565_0152 B565_0158 SM00487 DEAD-like helicases superfamily B565_0158 SM00490 helicase superfamily c-terminal domain B565_0159 SM00155 Phospholipase D. Active site motifs. B565_0164 SM00354 helix_turn _helix lactose operon repressor B565_0168 SM00450 Rhodanese Homology Domain B565_0177 SM00316 Ribosomal protein S1-like RNA-binding domain B565_0177 SM00732 Likely ribonuclease with RNase H fold. B565_0179 SM00448 cheY-homologous receiver domain B565_0179 SM00862 Transcriptional regulatory protein, C terminal B565_0180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0180 SM00387 Histidine kinase-like ATPases B565_0180 SM00388 His Kinase A (phosphoacceptor) domain B565_0182 SM01403 B565_0182 B565_0186 SM01382 B565_0186 B565_0186 SM01383 B565_0186 B565_0189 SM00322 K homology RNA-binding domain B565_0193 SM01374 B565_0193 B565_0206 SM00363 S4 RNA-binding domain B565_0206 SM01390 B565_0206 B565_0207 SM00662 RNA polymerases D B565_0210 SM00062 Bacterial periplasmic substrate-binding proteins B565_0210 SM00267 diguanylate cyclase B565_0211 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0211 SM00387 Histidine kinase-like ATPases B565_0211 SM00388 His Kinase A (phosphoacceptor) domain B565_0212 SM00448 cheY-homologous receiver domain B565_0212 SM00862 Transcriptional regulatory protein, C terminal B565_0224 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_0224 SM00091 PAS domain B565_0224 SM00267 diguanylate cyclase B565_0228 SM00530 Helix-turn-helix XRE-family like proteins B565_0229 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_0229 SM00866 B565_0229 B565_0234 SM00382 ATPases associated with a variety of cellular activities B565_0236 SM00267 diguanylate cyclase B565_0250 SM00421 helix_turn_helix, Lux Regulon B565_0251 SM00062 Bacterial periplasmic substrate-binding proteins B565_0254 SM01060 B565_0254 B565_0256 SM00342 helix_turn_helix, arabinose operon control protein B565_0256 SM00871 Bacterial transcription activator, effector binding domain B565_0281 SM01219 B565_0281 B565_0288 SM00100 Cyclic nucleotide-monophosphate binding domain B565_0299 SM00382 ATPases associated with a variety of cellular activities B565_0300 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_0304 SM00382 ATPases associated with a variety of cellular activities B565_0319 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B565_0320 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B565_0330 SM00749 bacterial OsmY and nodulation domain B565_0348 SM00842 Cell division protein FtsA B565_0349 SM00864 Tubulin/FtsZ family, GTPase domain B565_0349 SM00865 Tubulin/FtsZ family, C-terminal domain B565_0352 SM00957 SecA DEAD-like domain B565_0352 SM00958 SecA preprotein cross-linking domain B565_0362 SM00644 B565_0362 B565_0363 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_0363 SM00895 B565_0363 B565_0367 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B565_0367 SM00267 diguanylate cyclase B565_0368 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0368 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0371 SM00052 Putative diguanylate phosphodiesterase B565_0373 SM00833 Cobalamin synthesis protein cobW C-terminal domain B565_0380 SM00905 Dihydroneopterin aldolase B565_0381 SM01207 B565_0381 B565_0389 SM00859 Semialdehyde dehydrogenase, NAD binding domain B565_0394 SM00267 diguanylate cyclase B565_0398 SM00267 diguanylate cyclase B565_0404 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_0404 SM00895 B565_0404 B565_0407 SM00363 S4 RNA-binding domain B565_0409 SM00014 Acid phosphatase homologues B565_0415 SM00091 PAS domain B565_0418 SM01120 B565_0418 B565_0421 SM00357 Cold shock protein domain B565_0424 SM00062 Bacterial periplasmic substrate-binding proteins B565_0426 SM00421 helix_turn_helix, Lux Regulon B565_0434 SM00267 diguanylate cyclase B565_0436 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0436 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0443 SM00530 Helix-turn-helix XRE-family like proteins B565_0449 SM00852 Probable molybdopterin binding domain B565_0453 SM00344 helix_turn_helix ASNC type B565_0457 SM00642 Alpha-amylase domain B565_0465 SM00851 MGS-like domain B565_0470 SM00260 Two component signalling adaptor domain B565_0470 SM00448 cheY-homologous receiver domain B565_0481 SM00862 Transcriptional regulatory protein, C terminal B565_0483 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain B565_0493 SM00487 DEAD-like helicases superfamily B565_0493 SM00490 helicase superfamily c-terminal domain B565_0500 SM00271 DnaJ molecular chaperone homology domain B565_0512 SM00387 Histidine kinase-like ATPases B565_0512 SM00433 TopoisomeraseII B565_0513 SM00434 DNA Topoisomerase IV B565_0521 SM00271 DnaJ molecular chaperone homology domain B565_0529 SM00563 Phosphate acyltransferases B565_0536 SM00986 Uracil DNA glycosylase superfamily B565_0536 SM00987 UreE urease accessory protein, C-terminal domain B565_0540 SM00382 ATPases associated with a variety of cellular activities B565_0548 SM00347 helix_turn_helix multiple antibiotic resistance protein B565_0551 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_0553 SM00478 endonuclease III B565_0553 SM00525 B565_0553 B565_0559 SM00267 diguanylate cyclase B565_0560 SM00316 Ribosomal protein S1-like RNA-binding domain B565_0560 SM00357 Cold shock protein domain B565_0560 SM00955 B565_0560 B565_0561 SM00967 RNA 2'-O ribose methyltransferase substrate binding B565_0564 SM00487 DEAD-like helicases superfamily B565_0564 SM00490 helicase superfamily c-terminal domain B565_0572 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0581 SM00822 B565_0581 B565_0590 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B565_0590 SM00267 diguanylate cyclase B565_0591 SM00357 Cold shock protein domain B565_0591 SM00955 B565_0591 B565_0594 SM00421 helix_turn_helix, Lux Regulon B565_0596 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0596 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0597 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B565_0598 SM00382 ATPases associated with a variety of cellular activities B565_0618 SM00344 helix_turn_helix ASNC type B565_0624 SM00642 Alpha-amylase domain B565_0625 SM00642 Alpha-amylase domain B565_0627 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B565_0630 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0630 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0632 SM00244 prohibitin homologues B565_0638 SM00901 B565_0638 B565_0640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0644 SM00382 ATPases associated with a variety of cellular activities B565_0651 SM00448 cheY-homologous receiver domain B565_0651 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_0657 SM00487 DEAD-like helicases superfamily B565_0657 SM00490 helicase superfamily c-terminal domain B565_0657 SM00847 Helicase associated domain (HA2) Add an annotation B565_0668 SM00450 Rhodanese Homology Domain B565_0673 SM00382 ATPases associated with a variety of cellular activities B565_0678 SM00014 Acid phosphatase homologues B565_0683 SM00644 B565_0683 B565_0685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0685 SM00387 Histidine kinase-like ATPases B565_0685 SM00388 His Kinase A (phosphoacceptor) domain B565_0685 SM00448 cheY-homologous receiver domain B565_0687 SM00954 Region found in RelA / SpoT proteins B565_0690 SM01192 B565_0690 B565_0690 SM01193 B565_0690 B565_0693 SM00028 Tetratricopeptide repeats B565_0701 SM00382 ATPases associated with a variety of cellular activities B565_0702 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_0705 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_0724 SM00257 Lysin motif B565_0732 SM00849 Metallo-beta-lactamase superfamily B565_0734 SM00487 DEAD-like helicases superfamily B565_0734 SM00490 helicase superfamily c-terminal domain B565_0735 SM00267 diguanylate cyclase B565_0745 SM00387 Histidine kinase-like ATPases B565_0746 SM00448 cheY-homologous receiver domain B565_0746 SM00862 Transcriptional regulatory protein, C terminal B565_0752 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0752 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0754 SM00287 Bacterial SH3 domain homologues B565_0759 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B565_0782 SM00358 Double-stranded RNA binding motif B565_0782 SM00535 Ribonuclease III family B565_0794 SM00420 helix_turn_helix, Deoxyribose operon repressor B565_0794 SM01134 B565_0794 B565_0801 SM00327 von Willebrand factor (vWF) type A domain B565_0803 SM00052 Putative diguanylate phosphodiesterase B565_0803 SM00091 PAS domain B565_0803 SM00267 diguanylate cyclase B565_0808 SM01057 Eukaryotic-type carbonic anhydrase B565_0817 SM00100 Cyclic nucleotide-monophosphate binding domain B565_0817 SM00419 helix_turn_helix, cAMP Regulatory protein B565_0823 SM00267 diguanylate cyclase B565_0825 SM00260 Two component signalling adaptor domain B565_0825 SM00448 cheY-homologous receiver domain B565_0829 SM00978 B565_0829 B565_0830 SM00382 ATPases associated with a variety of cellular activities B565_0832 SM01005 Alanine racemase, C-terminal domain B565_0836 SM00382 ATPases associated with a variety of cellular activities B565_0847 SM00530 Helix-turn-helix XRE-family like proteins B565_0849 SM00387 Histidine kinase-like ATPases B565_0849 SM00388 His Kinase A (phosphoacceptor) domain B565_0849 SM00448 cheY-homologous receiver domain B565_0850 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B565_0850 SM00495 Chitin-binding domain type 3 B565_0850 SM00636 B565_0850 B565_0851 SM00267 diguanylate cyclase B565_0852 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins B565_0852 SM00495 Chitin-binding domain type 3 B565_0852 SM00636 B565_0852 B565_0853 SM00495 Chitin-binding domain type 3 B565_0854 SM00495 Chitin-binding domain type 3 B565_0857 SM00495 Chitin-binding domain type 3 B565_0857 SM00636 B565_0857 B565_0858 SM00260 Two component signalling adaptor domain B565_0858 SM00448 cheY-homologous receiver domain B565_0860 SM00382 ATPases associated with a variety of cellular activities B565_0863 SM00052 Putative diguanylate phosphodiesterase B565_0869 SM00450 Rhodanese Homology Domain B565_0872 SM00852 Probable molybdopterin binding domain B565_0882 SM00937 B565_0882 B565_0883 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0883 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0885 SM00870 B565_0885 B565_0887 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain B565_0890 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_0893 SM00936 Penicillin-binding protein 5, C-terminal domain B565_0909 SM00267 diguanylate cyclase B565_0914 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_0914 SM01091 Transporter associated domain B565_0917 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_0920 SM00267 diguanylate cyclase B565_0928 SM00841 Elongation factor P, C-terminal B565_0928 SM01185 B565_0928 B565_0930 SM01240 B565_0930 B565_0932 SM00387 Histidine kinase-like ATPases B565_0932 SM00388 His Kinase A (phosphoacceptor) domain B565_0933 SM00448 cheY-homologous receiver domain B565_0933 SM00862 Transcriptional regulatory protein, C terminal B565_0936 SM01236 B565_0936 B565_0952 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0952 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0959 SM00849 Metallo-beta-lactamase superfamily B565_0961 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_0961 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_0964 SM00842 Cell division protein FtsA B565_0968 SM00965 Secretin and TonB N terminus short domain B565_0982 SM01150 B565_0982 B565_0986 SM00890 Domain of unknown function B565_0987 SM00642 Alpha-amylase domain B565_0990 SM01022 B565_0990 B565_0991 SM00100 Cyclic nucleotide-monophosphate binding domain B565_0998 SM01400 B565_0998 B565_1002 SM00937 B565_1002 B565_1010 SM00986 Uracil DNA glycosylase superfamily B565_1010 SM00987 UreE urease accessory protein, C-terminal domain B565_1013 SM00342 helix_turn_helix, arabinose operon control protein B565_1015 SM00788 Adenylosuccinate synthetase B565_1021 SM00822 B565_1021 B565_1028 SM00052 Putative diguanylate phosphodiesterase B565_1034 SM00421 helix_turn_helix, Lux Regulon B565_1034 SM00448 cheY-homologous receiver domain B565_1035 SM00062 Bacterial periplasmic substrate-binding proteins B565_1035 SM00387 Histidine kinase-like ATPases B565_1035 SM00388 His Kinase A (phosphoacceptor) domain B565_1035 SM00448 cheY-homologous receiver domain B565_1038 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B565_1038 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B565_1038 SM00493 B565_1038 B565_1041 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1045 SM00382 ATPases associated with a variety of cellular activities B565_1046 SM00382 ATPases associated with a variety of cellular activities B565_1050 SM00091 PAS domain B565_1050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1050 SM00387 Histidine kinase-like ATPases B565_1050 SM00388 His Kinase A (phosphoacceptor) domain B565_1050 SM00448 cheY-homologous receiver domain B565_1058 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_1058 SM00091 PAS domain B565_1058 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1061 SM00852 Probable molybdopterin binding domain B565_1063 SM00382 ATPases associated with a variety of cellular activities B565_1066 SM00382 ATPases associated with a variety of cellular activities B565_1066 SM00448 cheY-homologous receiver domain B565_1067 SM00387 Histidine kinase-like ATPases B565_1067 SM00388 His Kinase A (phosphoacceptor) domain B565_1077 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B565_1082 SM00919 Malic enzyme, NAD binding domain B565_1082 SM01274 B565_1082 B565_1086 SM00062 Bacterial periplasmic substrate-binding proteins B565_1087 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1087 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1088 SM00862 Transcriptional regulatory protein, C terminal B565_1097 SM00342 helix_turn_helix, arabinose operon control protein B565_1097 SM00871 Bacterial transcription activator, effector binding domain B565_1102 SM00382 ATPases associated with a variety of cellular activities B565_1114 SM00382 ATPases associated with a variety of cellular activities B565_1114 SM00962 SRP54-type protein, GTPase domain B565_1117 SM00448 cheY-homologous receiver domain B565_1119 SM00073 Histidine Phosphotransfer domain B565_1119 SM00260 Two component signalling adaptor domain B565_1119 SM00387 Histidine kinase-like ATPases B565_1119 SM01231 B565_1119 B565_1120 SM00448 cheY-homologous receiver domain B565_1124 SM00260 Two component signalling adaptor domain B565_1125 SM00260 Two component signalling adaptor domain B565_1127 SM00382 ATPases associated with a variety of cellular activities B565_1155 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. B565_1177 SM00354 helix_turn _helix lactose operon repressor B565_1185 SM00481 DNA polymerase alpha chain like domain B565_1186 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B565_1188 SM00052 Putative diguanylate phosphodiesterase B565_1188 SM00448 cheY-homologous receiver domain B565_1189 SM00062 Bacterial periplasmic substrate-binding proteins B565_1189 SM00073 Histidine Phosphotransfer domain B565_1189 SM00387 Histidine kinase-like ATPases B565_1189 SM00388 His Kinase A (phosphoacceptor) domain B565_1189 SM00448 cheY-homologous receiver domain B565_1199 SM00897 FIST N domain B565_1199 SM01204 B565_1199 B565_1200 SM00387 Histidine kinase-like ATPases B565_1200 SM00388 His Kinase A (phosphoacceptor) domain B565_1200 SM00448 cheY-homologous receiver domain B565_1201 SM00464 Found in ATP-dependent protease La (LON) B565_1202 SM00421 helix_turn_helix, Lux Regulon B565_1202 SM00448 cheY-homologous receiver domain B565_1203 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1203 SM00387 Histidine kinase-like ATPases B565_1204 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_1207 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B565_1212 SM00852 Probable molybdopterin binding domain B565_1218 SM00382 ATPases associated with a variety of cellular activities B565_1221 SM00852 Probable molybdopterin binding domain B565_1223 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1223 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1227 SM00867 YceI-like domain B565_1229 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain B565_1231 SM00563 Phosphate acyltransferases B565_1235 SM00849 Metallo-beta-lactamase superfamily B565_1238 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1238 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1243 SM00855 Phosphoglycerate mutase family B565_1244 SM00530 Helix-turn-helix XRE-family like proteins B565_1275 SM00959 Rho termination factor, N-terminal domain B565_1296 SM00155 Phospholipase D. Active site motifs. B565_1311 SM00448 cheY-homologous receiver domain B565_1311 SM00862 Transcriptional regulatory protein, C terminal B565_1312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1312 SM00387 Histidine kinase-like ATPases B565_1312 SM00388 His Kinase A (phosphoacceptor) domain B565_1313 SM00487 DEAD-like helicases superfamily B565_1313 SM00490 helicase superfamily c-terminal domain B565_1317 SM00257 Lysin motif B565_1318 SM00849 Metallo-beta-lactamase superfamily B565_1321 SM00479 B565_1321 B565_1323 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_1327 SM00382 ATPases associated with a variety of cellular activities B565_1340 SM00028 Tetratricopeptide repeats B565_1340 SM00448 cheY-homologous receiver domain B565_1345 SM00267 diguanylate cyclase B565_1364 SM00477 DNA/RNA non-specific endonuclease B565_1364 SM00892 DNA/RNA non-specific endonuclease B565_1366 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1366 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1368 SM00342 helix_turn_helix, arabinose operon control protein B565_1369 SM01329 B565_1369 B565_1384 SM00834 Putative regulatory protein B565_1392 SM00382 ATPases associated with a variety of cellular activities B565_1393 SM00382 ATPases associated with a variety of cellular activities B565_1395 SM01005 Alanine racemase, C-terminal domain B565_1398 SM00382 ATPases associated with a variety of cellular activities B565_1400 SM00062 Bacterial periplasmic substrate-binding proteins B565_1402 SM00382 ATPases associated with a variety of cellular activities B565_1412 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain B565_1413 SM00851 MGS-like domain B565_1413 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain B565_1415 SM00830 Chorismate mutase type II B565_1427 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1427 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1432 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1432 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1442 SM00052 Putative diguanylate phosphodiesterase B565_1442 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_1442 SM00091 PAS domain B565_1442 SM00267 diguanylate cyclase B565_1443 SM00450 Rhodanese Homology Domain B565_1445 SM01359 B565_1445 B565_1445 SM01360 B565_1445 B565_1449 SM00981 B565_1449 B565_1468 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1468 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1480 SM00091 PAS domain B565_1480 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1482 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B565_1487 SM00342 helix_turn_helix, arabinose operon control protein B565_1488 SM01217 B565_1488 B565_1498 SM00382 ATPases associated with a variety of cellular activities B565_1509 SM00062 Bacterial periplasmic substrate-binding proteins B565_1509 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B565_1512 SM00382 ATPases associated with a variety of cellular activities B565_1513 SM00062 Bacterial periplasmic substrate-binding proteins B565_1513 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B565_1532 SM00984 UDP binding domain B565_1547 SM00829 Enoylreductase B565_1549 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_1549 SM01091 Transporter associated domain B565_1554 SM00487 DEAD-like helicases superfamily B565_1554 SM00490 helicase superfamily c-terminal domain B565_1556 SM00479 B565_1556 B565_1557 SM00014 Acid phosphatase homologues B565_1559 SM00859 Semialdehyde dehydrogenase, NAD binding domain B565_1586 SM00382 ATPases associated with a variety of cellular activities B565_1601 SM00493 B565_1601 B565_1602 SM00387 Histidine kinase-like ATPases B565_1603 SM00382 ATPases associated with a variety of cellular activities B565_1604 SM00382 ATPases associated with a variety of cellular activities B565_1608 SM00382 ATPases associated with a variety of cellular activities B565_1616 SM00382 ATPases associated with a variety of cellular activities B565_1622 SM00091 PAS domain B565_1622 SM00382 ATPases associated with a variety of cellular activities B565_1624 SM00267 diguanylate cyclase B565_1641 SM00062 Bacterial periplasmic substrate-binding proteins B565_1656 SM00387 Histidine kinase-like ATPases B565_1656 SM00388 His Kinase A (phosphoacceptor) domain B565_1656 SM00448 cheY-homologous receiver domain B565_1657 SM00382 ATPases associated with a variety of cellular activities B565_1658 SM00382 ATPases associated with a variety of cellular activities B565_1675 SM00861 Transketolase, pyrimidine binding domain B565_1678 SM00881 CoA binding domain B565_1682 SM00382 ATPases associated with a variety of cellular activities B565_1684 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_1684 SM00866 B565_1684 B565_1702 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1702 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1702 SM01049 B565_1702 B565_1704 SM01144 B565_1704 B565_1708 SM00342 helix_turn_helix, arabinose operon control protein B565_1711 SM00642 Alpha-amylase domain B565_1714 SM00062 Bacterial periplasmic substrate-binding proteins B565_1719 SM00382 ATPases associated with a variety of cellular activities B565_1722 SM00518 AP endonuclease family 2 B565_1727 SM00090 RIO-like kinase B565_1729 SM00267 diguanylate cyclase B565_1731 SM00486 DNA polymerase type-B family B565_1741 SM00825 Beta-ketoacyl synthase B565_1745 SM00487 DEAD-like helicases superfamily B565_1745 SM00490 helicase superfamily c-terminal domain B565_1750 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_1752 SM01322 B565_1752 B565_1754 SM00530 Helix-turn-helix XRE-family like proteins B565_1785 SM00959 Rho termination factor, N-terminal domain B565_1792 SM00028 Tetratricopeptide repeats B565_1803 SM00382 ATPases associated with a variety of cellular activities B565_1815 SM00347 helix_turn_helix multiple antibiotic resistance protein B565_1858 SM01092 CO dehydrogenase flavoprotein C-terminal domain B565_1859 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain B565_1863 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain B565_1864 SM01092 CO dehydrogenase flavoprotein C-terminal domain B565_1872 SM00091 PAS domain B565_1872 SM00267 diguanylate cyclase B565_1883 SM00491 B565_1883 B565_1888 SM00341 Helicase and RNase D C-terminal B565_1888 SM00474 3'-5' exonuclease B565_1889 SM00849 Metallo-beta-lactamase superfamily B565_1890 SM00450 Rhodanese Homology Domain B565_1894 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B565_1895 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_1895 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_1904 SM00925 MltA specific insert domain B565_1910 SM00434 DNA Topoisomerase IV B565_1911 SM00642 Alpha-amylase domain B565_1913 SM00671 Sel1-like repeats. B565_1914 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B565_1919 SM00873 B3/4 domain B565_1919 SM00874 tRNA synthetase B5 domain B565_1919 SM00896 Ferredoxin-fold anticodon binding domain B565_1920 SM00411 bacterial (prokaryotic) histone like domain B565_1921 SM00062 Bacterial periplasmic substrate-binding proteins B565_1921 SM00387 Histidine kinase-like ATPases B565_1921 SM00388 His Kinase A (phosphoacceptor) domain B565_1921 SM00448 cheY-homologous receiver domain B565_1926 SM00267 diguanylate cyclase B565_1927 SM00354 helix_turn _helix lactose operon repressor B565_1931 SM00382 ATPases associated with a variety of cellular activities B565_1938 SM00382 ATPases associated with a variety of cellular activities B565_1943 SM00100 Cyclic nucleotide-monophosphate binding domain B565_1943 SM00419 helix_turn_helix, cAMP Regulatory protein B565_1954 SM00945 ProQ/FINO family B565_1955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B565_1955 SM00245 tail specific protease B565_1962 SM00981 B565_1962 B565_1964 SM00382 ATPases associated with a variety of cellular activities B565_1973 SM00822 B565_1973 B565_1992 SM00382 ATPases associated with a variety of cellular activities B565_1996 SM00825 Beta-ketoacyl synthase B565_1998 SM00822 B565_1998 B565_1999 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. B565_2006 SM00363 S4 RNA-binding domain B565_2007 SM00316 Ribosomal protein S1-like RNA-binding domain B565_2012 SM00354 helix_turn _helix lactose operon repressor B565_2017 SM00487 DEAD-like helicases superfamily B565_2017 SM00490 helicase superfamily c-terminal domain B565_2021 SM00463 Small MutS-related domain B565_2022 SM00091 PAS domain B565_2022 SM00267 diguanylate cyclase B565_2023 SM00855 Phosphoglycerate mutase family B565_2024 SM00495 Chitin-binding domain type 3 B565_2026 SM00782 PhnA Zinc-Ribbon B565_2033 SM00487 DEAD-like helicases superfamily B565_2033 SM00490 helicase superfamily c-terminal domain B565_2034 SM00763 PrkA AAA domain B565_2042 SM00327 von Willebrand factor (vWF) type A domain B565_2043 SM00028 Tetratricopeptide repeats B565_2049 SM00052 Putative diguanylate phosphodiesterase B565_2051 SM00422 helix_turn_helix, mercury resistance B565_2054 SM00382 ATPases associated with a variety of cellular activities B565_2054 SM00487 DEAD-like helicases superfamily B565_2054 SM00490 helicase superfamily c-terminal domain B565_2054 SM00847 Helicase associated domain (HA2) Add an annotation B565_2055 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2056 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2062 SM00327 von Willebrand factor (vWF) type A domain B565_2063 SM00327 von Willebrand factor (vWF) type A domain B565_2070 SM00267 diguanylate cyclase B565_2075 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_2075 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2098 SM00859 Semialdehyde dehydrogenase, NAD binding domain B565_2100 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B565_2100 SM00382 ATPases associated with a variety of cellular activities B565_2119 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_2119 SM00866 B565_2119 B565_2137 SM00382 ATPases associated with a variety of cellular activities B565_2138 SM00382 ATPases associated with a variety of cellular activities B565_2148 SM00267 diguanylate cyclase B565_2166 SM00331 Sigma factor PP2C-like phosphatases B565_2166 SM00448 cheY-homologous receiver domain B565_2172 SM00387 Histidine kinase-like ATPases B565_2172 SM00388 His Kinase A (phosphoacceptor) domain B565_2172 SM00448 cheY-homologous receiver domain B565_2179 SM00822 B565_2179 B565_2187 SM00878 Biotin carboxylase C-terminal domain B565_2187 SM01209 B565_2187 B565_2189 SM00422 helix_turn_helix, mercury resistance B565_2190 SM00062 Bacterial periplasmic substrate-binding proteins B565_2209 SM00100 Cyclic nucleotide-monophosphate binding domain B565_2209 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2210 SM00479 B565_2210 B565_2213 SM00382 ATPases associated with a variety of cellular activities B565_2215 SM00411 bacterial (prokaryotic) histone like domain B565_2216 SM00382 ATPases associated with a variety of cellular activities B565_2216 SM00464 Found in ATP-dependent protease La (LON) B565_2217 SM00382 ATPases associated with a variety of cellular activities B565_2217 SM00994 ClpX C4-type zinc finger B565_2217 SM01086 C-terminal, D2-small domain, of ClpB protein B565_2221 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2223 SM00382 ATPases associated with a variety of cellular activities B565_2226 SM00487 DEAD-like helicases superfamily B565_2226 SM00490 helicase superfamily c-terminal domain B565_2226 SM00982 B565_2226 B565_2226 SM01058 CarD-like/TRCF domain B565_2231 SM00855 Phosphoglycerate mutase family B565_2234 SM00364 Leucine-rich repeats, bacterial type B565_2234 SM00369 Leucine-rich repeats, typical (most populated) subfamily B565_2239 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2239 SM01240 B565_2239 B565_2242 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_2242 SM00866 B565_2242 B565_2244 SM00872 Alpha mannosidase, middle domain B565_2246 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. B565_2248 SM00487 DEAD-like helicases superfamily B565_2248 SM00490 helicase superfamily c-terminal domain B565_2249 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_2250 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_2250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2255 SM00893 Electron transfer flavoprotein domain B565_2256 SM00893 Electron transfer flavoprotein domain B565_2264 SM00052 Putative diguanylate phosphodiesterase B565_2264 SM00267 diguanylate cyclase B565_2275 SM00382 ATPases associated with a variety of cellular activities B565_2277 SM00843 B565_2277 B565_2278 SM00344 helix_turn_helix ASNC type B565_2279 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B565_2279 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B565_2281 SM00267 diguanylate cyclase B565_2281 SM00448 cheY-homologous receiver domain B565_2285 SM00316 Ribosomal protein S1-like RNA-binding domain B565_2286 SM00382 ATPases associated with a variety of cellular activities B565_2286 SM01086 C-terminal, D2-small domain, of ClpB protein B565_2288 SM00357 Cold shock protein domain B565_2290 SM00448 cheY-homologous receiver domain B565_2290 SM00862 Transcriptional regulatory protein, C terminal B565_2291 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2291 SM00387 Histidine kinase-like ATPases B565_2291 SM00388 His Kinase A (phosphoacceptor) domain B565_2296 SM01154 B565_2296 B565_2299 SM00528 Domain in histone-like proteins of HNS family B565_2304 SM01144 B565_2304 B565_2306 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family B565_2307 SM00028 Tetratricopeptide repeats B565_2309 SM00411 bacterial (prokaryotic) histone like domain B565_2310 SM00316 Ribosomal protein S1-like RNA-binding domain B565_2320 SM00052 Putative diguanylate phosphodiesterase B565_2320 SM00267 diguanylate cyclase B565_2322 SM00448 cheY-homologous receiver domain B565_2323 SM00091 PAS domain B565_2328 SM00360 RNA recognition motif B565_2330 SM00382 ATPases associated with a variety of cellular activities B565_2332 SM00062 Bacterial periplasmic substrate-binding proteins B565_2332 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B565_2349 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region B565_2350 SM00926 Molybdopterin oxidoreductase Fe4S4 domain B565_2350 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region B565_2358 SM01204 B565_2358 B565_2359 SM00091 PAS domain B565_2359 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2360 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2361 SM01211 B565_2361 B565_2362 SM00062 Bacterial periplasmic substrate-binding proteins B565_2365 SM00564 beta-propeller repeat B565_2369 SM00530 Helix-turn-helix XRE-family like proteins B565_2370 SM00028 Tetratricopeptide repeats B565_2372 SM00562 B565_2372 B565_2377 SM00271 DnaJ molecular chaperone homology domain B565_2387 SM00028 Tetratricopeptide repeats B565_2388 SM00450 Rhodanese Homology Domain B565_2391 SM01323 B565_2391 B565_2394 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2399 SM00327 von Willebrand factor (vWF) type A domain B565_2400 SM00052 Putative diguanylate phosphodiesterase B565_2400 SM00267 diguanylate cyclase B565_2404 SM00382 ATPases associated with a variety of cellular activities B565_2405 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_2409 SM00487 DEAD-like helicases superfamily B565_2409 SM00490 helicase superfamily c-terminal domain B565_2418 SM00062 Bacterial periplasmic substrate-binding proteins B565_2420 SM00062 Bacterial periplasmic substrate-binding proteins B565_2424 SM00840 B565_2424 B565_2428 SM01276 B565_2428 B565_2431 SM00387 Histidine kinase-like ATPases B565_2431 SM00388 His Kinase A (phosphoacceptor) domain B565_2432 SM00448 cheY-homologous receiver domain B565_2432 SM00862 Transcriptional regulatory protein, C terminal B565_2446 SM00530 Helix-turn-helix XRE-family like proteins B565_2487 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B565_2487 SM00465 GIY-YIG type nucleases (URI domain) B565_2488 SM00421 helix_turn_helix, Lux Regulon B565_2488 SM00448 cheY-homologous receiver domain B565_2492 SM00382 ATPases associated with a variety of cellular activities B565_2493 SM00849 Metallo-beta-lactamase superfamily B565_2503 SM00420 helix_turn_helix, Deoxyribose operon repressor B565_2503 SM01134 B565_2503 B565_2507 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_2507 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2524 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_2531 SM00363 S4 RNA-binding domain B565_2543 SM00900 B565_2543 B565_2545 SM00478 endonuclease III B565_2545 SM00525 B565_2545 B565_2553 SM00491 B565_2553 B565_2557 SM00098 Alkaline phosphatase homologues B565_2558 SM00098 Alkaline phosphatase homologues B565_2562 SM00421 helix_turn_helix, Lux Regulon B565_2562 SM00448 cheY-homologous receiver domain B565_2563 SM00387 Histidine kinase-like ATPases B565_2565 SM00267 diguanylate cyclase B565_2566 SM00062 Bacterial periplasmic substrate-binding proteins B565_2566 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. B565_2568 SM00382 ATPases associated with a variety of cellular activities B565_2574 SM01091 Transporter associated domain B565_2576 SM00382 ATPases associated with a variety of cellular activities B565_2588 SM00382 ATPases associated with a variety of cellular activities B565_2588 SM00448 cheY-homologous receiver domain B565_2589 SM00091 PAS domain B565_2589 SM00387 Histidine kinase-like ATPases B565_2589 SM00388 His Kinase A (phosphoacceptor) domain B565_2590 SM00382 ATPases associated with a variety of cellular activities B565_2595 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2595 SM00924 MgtE intracellular N domain B565_2598 SM00047 Lysozyme subfamily 2 B565_2607 SM00138 Methyltransferase, chemotaxis proteins B565_2608 SM00260 Two component signalling adaptor domain B565_2608 SM00448 cheY-homologous receiver domain B565_2609 SM00858 B565_2609 B565_2615 SM00363 S4 RNA-binding domain B565_2616 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2621 SM00420 helix_turn_helix, Deoxyribose operon repressor B565_2621 SM01134 B565_2621 B565_2628 SM00357 Cold shock protein domain B565_2630 SM00861 Transketolase, pyrimidine binding domain B565_2633 SM00823 Phosphopantetheine attachment site B565_2640 SM00354 helix_turn _helix lactose operon repressor B565_2642 SM00052 Putative diguanylate phosphodiesterase B565_2642 SM00267 diguanylate cyclase B565_2654 SM00382 ATPases associated with a variety of cellular activities B565_2657 SM00347 helix_turn_helix multiple antibiotic resistance protein B565_2668 SM01081 Putative carbohydrate binding domain B565_2674 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B565_2676 SM00448 cheY-homologous receiver domain B565_2676 SM00850 LytTr DNA-binding domain B565_2680 SM00487 DEAD-like helicases superfamily B565_2680 SM00490 helicase superfamily c-terminal domain B565_2688 SM00890 Domain of unknown function B565_2692 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_2697 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_2697 SM00876 Biotin and Thiamin Synthesis associated domain B565_2699 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2711 SM01091 Transporter associated domain B565_2715 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_2715 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2729 SM00382 ATPases associated with a variety of cellular activities B565_2733 SM00858 B565_2733 B565_2743 SM00091 PAS domain B565_2743 SM00267 diguanylate cyclase B565_2746 SM00382 ATPases associated with a variety of cellular activities B565_2752 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B565_2757 SM00354 helix_turn _helix lactose operon repressor B565_2758 SM00640 Glycosyl hydrolases family 32 B565_2762 SM00271 DnaJ molecular chaperone homology domain B565_2767 SM01131 B565_2767 B565_2769 SM00382 ATPases associated with a variety of cellular activities B565_2771 SM00528 Domain in histone-like proteins of HNS family B565_2790 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_2805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2806 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_2817 SM00363 S4 RNA-binding domain B565_2821 SM00481 DNA polymerase alpha chain like domain B565_2835 SM00382 ATPases associated with a variety of cellular activities B565_2837 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B565_2842 SM00448 cheY-homologous receiver domain B565_2842 SM00862 Transcriptional regulatory protein, C terminal B565_2843 SM00382 ATPases associated with a variety of cellular activities B565_2844 SM00382 ATPases associated with a variety of cellular activities B565_2851 SM00448 cheY-homologous receiver domain B565_2851 SM00862 Transcriptional regulatory protein, C terminal B565_2852 SM00387 Histidine kinase-like ATPases B565_2858 SM00530 Helix-turn-helix XRE-family like proteins B565_2878 SM00267 diguanylate cyclase B565_2883 SM00382 ATPases associated with a variety of cellular activities B565_2886 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_2886 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_2887 SM00382 ATPases associated with a variety of cellular activities B565_2891 SM00382 ATPases associated with a variety of cellular activities B565_2905 SM00342 helix_turn_helix, arabinose operon control protein B565_2922 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_2925 SM00267 diguanylate cyclase B565_2928 SM00530 Helix-turn-helix XRE-family like proteins B565_2933 SM00919 Malic enzyme, NAD binding domain B565_2933 SM01274 B565_2933 B565_2934 SM00342 helix_turn_helix, arabinose operon control protein B565_2937 SM00267 diguanylate cyclase B565_2955 SM00091 PAS domain B565_2955 SM00387 Histidine kinase-like ATPases B565_2955 SM00388 His Kinase A (phosphoacceptor) domain B565_2956 SM00448 cheY-homologous receiver domain B565_2956 SM00862 Transcriptional regulatory protein, C terminal B565_2958 SM00382 ATPases associated with a variety of cellular activities B565_2960 SM00342 helix_turn_helix, arabinose operon control protein B565_2962 SM00448 cheY-homologous receiver domain B565_2963 SM00387 Histidine kinase-like ATPases B565_2964 SM00919 Malic enzyme, NAD binding domain B565_2964 SM01274 B565_2964 B565_2967 SM00347 helix_turn_helix multiple antibiotic resistance protein B565_2970 SM00062 Bacterial periplasmic substrate-binding proteins B565_2978 SM00292 breast cancer carboxy-terminal domain B565_2978 SM00532 Ligase N family B565_2979 SM00771 ZipA, C-terminal domain (FtsZ-binding) B565_2986 SM00062 Bacterial periplasmic substrate-binding proteins B565_2991 SM00642 Alpha-amylase domain B565_2993 SM00421 helix_turn_helix, Lux Regulon B565_2993 SM00448 cheY-homologous receiver domain B565_2998 SM00267 diguanylate cyclase B565_2999 SM00977 TilS substrate C-terminal domain B565_3006 SM00862 Transcriptional regulatory protein, C terminal B565_3009 SM00849 Metallo-beta-lactamase superfamily B565_3017 SM00363 S4 RNA-binding domain B565_3022 SM00861 Transketolase, pyrimidine binding domain B565_3024 SM00731 SprT homologues. B565_3029 SM00732 Likely ribonuclease with RNase H fold. B565_3035 SM00460 Transglutaminase/protease-like homologues B565_3040 SM00481 DNA polymerase alpha chain like domain B565_3046 SM00935 Outer membrane protein (OmpH-like) B565_3048 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. B565_3057 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_3073 SM00028 Tetratricopeptide repeats B565_3074 SM00267 diguanylate cyclase B565_3076 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B565_3076 SM00475 5'-3' exonuclease B565_3077 SM01329 B565_3077 B565_3083 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3083 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3097 SM00900 B565_3097 B565_3113 SM00422 helix_turn_helix, mercury resistance B565_3120 SM00830 Chorismate mutase type II B565_3127 SM00530 Helix-turn-helix XRE-family like proteins B565_3140 SM00487 DEAD-like helicases superfamily B565_3140 SM00490 helicase superfamily c-terminal domain B565_3144 SM00487 DEAD-like helicases superfamily B565_3144 SM00490 helicase superfamily c-terminal domain B565_3145 SM00487 DEAD-like helicases superfamily B565_3154 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3154 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3160 SM00463 Small MutS-related domain B565_3168 SM00342 helix_turn_helix, arabinose operon control protein B565_3168 SM00478 endonuclease III B565_3168 SM01009 AlkA N-terminal domain B565_3174 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3175 SM00448 cheY-homologous receiver domain B565_3177 SM00073 Histidine Phosphotransfer domain B565_3177 SM00260 Two component signalling adaptor domain B565_3177 SM00387 Histidine kinase-like ATPases B565_3177 SM01231 B565_3177 B565_3178 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3178 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3179 SM00260 Two component signalling adaptor domain B565_3180 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3181 SM00138 Methyltransferase, chemotaxis proteins B565_3183 SM00448 cheY-homologous receiver domain B565_3184 SM00316 Ribosomal protein S1-like RNA-binding domain B565_3184 SM00322 K homology RNA-binding domain B565_3185 SM01387 B565_3185 B565_3189 SM00316 Ribosomal protein S1-like RNA-binding domain B565_3195 SM00382 ATPases associated with a variety of cellular activities B565_3197 SM01103 B565_3197 B565_3204 SM00861 Transketolase, pyrimidine binding domain B565_3209 SM00382 ATPases associated with a variety of cellular activities B565_3209 SM00448 cheY-homologous receiver domain B565_3211 SM00320 WD40 repeats B565_3216 SM00382 ATPases associated with a variety of cellular activities B565_3227 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3227 SM00387 Histidine kinase-like ATPases B565_3227 SM00388 His Kinase A (phosphoacceptor) domain B565_3227 SM00448 cheY-homologous receiver domain B565_3230 SM00448 cheY-homologous receiver domain B565_3230 SM00862 Transcriptional regulatory protein, C terminal B565_3235 SM00052 Putative diguanylate phosphodiesterase B565_3235 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_3235 SM00091 PAS domain B565_3235 SM00267 diguanylate cyclase B565_3240 SM00878 Biotin carboxylase C-terminal domain B565_3245 SM00829 Enoylreductase B565_3248 SM01266 B565_3248 B565_3253 SM00028 Tetratricopeptide repeats B565_3264 SM00382 ATPases associated with a variety of cellular activities B565_3265 SM00382 ATPases associated with a variety of cellular activities B565_3267 SM00984 UDP binding domain B565_3274 SM00382 ATPases associated with a variety of cellular activities B565_3278 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3278 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3280 SM00357 Cold shock protein domain B565_3281 SM00479 B565_3281 B565_3288 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase B565_3293 SM00271 DnaJ molecular chaperone homology domain B565_3299 SM00650 Ribosomal RNA adenine dimethylases B565_3302 SM00530 Helix-turn-helix XRE-family like proteins B565_3310 SM00244 prohibitin homologues B565_3311 SM00244 prohibitin homologues B565_3315 SM00853 MutL C terminal dimerisation domain B565_3315 SM01340 B565_3315 B565_3317 SM00257 Lysin motif B565_3317 SM00646 B565_3317 B565_3323 SM00382 ATPases associated with a variety of cellular activities B565_3323 SM00930 B565_3323 B565_3326 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B565_3327 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3327 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3328 SM00052 Putative diguanylate phosphodiesterase B565_3328 SM00448 cheY-homologous receiver domain B565_3329 SM00062 Bacterial periplasmic substrate-binding proteins B565_3329 SM00073 Histidine Phosphotransfer domain B565_3329 SM00091 PAS domain B565_3329 SM00387 Histidine kinase-like ATPases B565_3329 SM00388 His Kinase A (phosphoacceptor) domain B565_3329 SM00448 cheY-homologous receiver domain B565_3331 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. B565_3332 SM00073 Histidine Phosphotransfer domain B565_3332 SM00091 PAS domain B565_3332 SM00387 Histidine kinase-like ATPases B565_3332 SM00388 His Kinase A (phosphoacceptor) domain B565_3332 SM00448 cheY-homologous receiver domain B565_3342 SM01130 B565_3342 B565_3349 SM00278 Helix-hairpin-helix DNA-binding motif class 1 B565_3352 SM00448 cheY-homologous receiver domain B565_3355 SM00382 ATPases associated with a variety of cellular activities B565_3373 SM00014 Acid phosphatase homologues B565_3375 SM00917 LeuA allosteric (dimerisation) domain B565_3376 SM01329 B565_3376 B565_3383 SM00382 ATPases associated with a variety of cellular activities B565_3384 SM00670 Large family of predicted nucleotide-binding domains B565_3388 SM00052 Putative diguanylate phosphodiesterase B565_3388 SM00267 diguanylate cyclase B565_3391 SM00883 Chaperonin 10 Kd subunit B565_3399 SM00400 zinc finger B565_3399 SM00493 B565_3399 B565_3399 SM00766 DNA primase DnaG DnaB-binding B565_3403 SM01209 B565_3403 B565_3403 SM01210 B565_3403 B565_3404 SM00798 AICARFT/IMPCHase bienzyme B565_3404 SM00851 MGS-like domain B565_3405 SM00422 helix_turn_helix, mercury resistance B565_3407 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_3417 SM00347 helix_turn_helix multiple antibiotic resistance protein B565_3419 SM00822 B565_3419 B565_3420 SM00028 Tetratricopeptide repeats B565_3420 SM00267 diguanylate cyclase B565_3421 SM00327 von Willebrand factor (vWF) type A domain B565_3422 SM00382 ATPases associated with a variety of cellular activities B565_3430 SM00829 Enoylreductase B565_3442 SM00411 bacterial (prokaryotic) histone like domain B565_3445 SM00382 ATPases associated with a variety of cellular activities B565_3452 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain B565_3453 SM01133 B565_3453 B565_3460 SM00938 Nitrogen regulatory protein P-II B565_3474 SM00904 Riboflavin kinase B565_3477 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor B565_3483 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. B565_3485 SM00927 DNA mismatch repair enzyme MutH B565_3491 SM00382 ATPases associated with a variety of cellular activities B565_3491 SM00962 SRP54-type protein, GTPase domain B565_3491 SM00963 SRP54-type protein, helical bundle domain B565_3493 SM01091 Transporter associated domain B565_3496 SM00671 Sel1-like repeats. B565_3500 SM00062 Bacterial periplasmic substrate-binding proteins B565_3501 SM00382 ATPases associated with a variety of cellular activities B565_3504 SM00382 ATPases associated with a variety of cellular activities B565_3507 SM00938 Nitrogen regulatory protein P-II B565_3513 SM00382 ATPases associated with a variety of cellular activities B565_3517 SM01152 B565_3517 B565_3532 SM00487 DEAD-like helicases superfamily B565_3532 SM00490 helicase superfamily c-terminal domain B565_3549 SM00245 tail specific protease B565_3556 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3556 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3556 SM01049 B565_3556 B565_3559 SM01266 B565_3559 B565_3567 SM00342 helix_turn_helix, arabinose operon control protein B565_3573 SM01118 B565_3573 B565_3574 SM01130 B565_3574 B565_3587 SM00487 DEAD-like helicases superfamily B565_3587 SM00490 helicase superfamily c-terminal domain B565_3590 SM01266 B565_3590 B565_3591 SM00642 Alpha-amylase domain B565_3593 SM00354 helix_turn _helix lactose operon repressor B565_3596 SM00870 B565_3596 B565_3597 SM01091 Transporter associated domain B565_3602 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain B565_3604 SM00382 ATPases associated with a variety of cellular activities B565_3606 SM00533 DNA-binding domain of DNA mismatch repair MUTS family B565_3606 SM00534 ATPase domain of DNA mismatch repair MUTS family B565_3618 SM00530 Helix-turn-helix XRE-family like proteins B565_3620 SM00876 Biotin and Thiamin Synthesis associated domain B565_3626 SM00999 Aerolysin toxin B565_3629 SM00448 cheY-homologous receiver domain B565_3629 SM00862 Transcriptional regulatory protein, C terminal B565_3630 SM00388 His Kinase A (phosphoacceptor) domain B565_3632 SM01018 B12 binding domain B565_3635 SM00354 helix_turn _helix lactose operon repressor B565_3649 SM00316 Ribosomal protein S1-like RNA-binding domain B565_3663 SM00382 ATPases associated with a variety of cellular activities B565_3666 SM00965 Secretin and TonB N terminus short domain B565_3672 SM00052 Putative diguanylate phosphodiesterase B565_3672 SM00267 diguanylate cyclase B565_3673 SM00052 Putative diguanylate phosphodiesterase B565_3679 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_3679 SM00866 B565_3679 B565_3680 SM00947 Carbonic anhydrase B565_3683 SM00382 ATPases associated with a variety of cellular activities B565_3684 SM00382 ATPases associated with a variety of cellular activities B565_3684 SM00962 SRP54-type protein, GTPase domain B565_3684 SM00963 SRP54-type protein, helical bundle domain B565_3692 SM00822 B565_3692 B565_3698 SM00155 Phospholipase D. Active site motifs. B565_3700 SM00062 Bacterial periplasmic substrate-binding proteins B565_3718 SM00838 Elongation factor G C-terminus B565_3718 SM00889 Elongation factor G, domain IV B565_3726 SM00663 RNA polymerase I subunit A N-terminus B565_3731 SM00649 Ribosomal protein L11/L12 B565_3732 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. B565_3732 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. B565_3741 SM00342 helix_turn_helix, arabinose operon control protein B565_3744 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain B565_3744 SM00437 Bacterial DNA topoisomerase I DNA-binding domain B565_3744 SM00493 B565_3744 B565_3745 SM00448 cheY-homologous receiver domain B565_3746 SM00100 Cyclic nucleotide-monophosphate binding domain B565_3746 SM00387 Histidine kinase-like ATPases B565_3750 SM00387 Histidine kinase-like ATPases B565_3751 SM00448 cheY-homologous receiver domain B565_3751 SM00862 Transcriptional regulatory protein, C terminal B565_3757 SM00382 ATPases associated with a variety of cellular activities B565_3757 SM00448 cheY-homologous receiver domain B565_3759 SM00387 Histidine kinase-like ATPases B565_3759 SM00388 His Kinase A (phosphoacceptor) domain B565_3761 SM00116 Domain in cystathionine beta-synthase and other proteins. B565_3763 SM00062 Bacterial periplasmic substrate-binding proteins B565_3764 SM00344 helix_turn_helix ASNC type B565_3766 SM00382 ATPases associated with a variety of cellular activities B565_3766 SM01086 C-terminal, D2-small domain, of ClpB protein B565_3768 SM00363 S4 RNA-binding domain B565_3776 SM01002 Alanine dehydrogenase/PNT, C-terminal domain B565_3776 SM01003 Alanine dehydrogenase/PNT, N-terminal domain B565_3778 SM00342 helix_turn_helix, arabinose operon control protein B565_3780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3796 SM00729 Elongator protein 3, MiaB family, Radical SAM B565_3805 SM01001 AIR carboxylase B565_3809 SM00257 Lysin motif B565_3816 SM01230 B565_3816 B565_3818 SM00091 PAS domain B565_3818 SM00387 Histidine kinase-like ATPases B565_3818 SM00388 His Kinase A (phosphoacceptor) domain B565_3819 SM00382 ATPases associated with a variety of cellular activities B565_3819 SM00448 cheY-homologous receiver domain B565_3830 SM00530 Helix-turn-helix XRE-family like proteins B565_3834 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3834 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3842 SM00382 ATPases associated with a variety of cellular activities B565_3843 SM00563 Phosphate acyltransferases B565_3844 SM00563 Phosphate acyltransferases B565_3852 SM00267 diguanylate cyclase B565_3853 SM00422 helix_turn_helix, mercury resistance B565_3859 SM00829 Enoylreductase B565_3868 SM01038 Beta galactosidase small chain B565_3869 SM00354 helix_turn _helix lactose operon repressor B565_3871 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs B565_3871 SM00474 3'-5' exonuclease B565_3871 SM00475 5'-3' exonuclease B565_3871 SM00482 DNA polymerase A domain B565_3875 SM00971 Serine acetyltransferase, N-terminal B565_3877 SM00448 cheY-homologous receiver domain B565_3877 SM00862 Transcriptional regulatory protein, C terminal B565_3878 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3878 SM00387 Histidine kinase-like ATPases B565_3878 SM00388 His Kinase A (phosphoacceptor) domain B565_3884 SM00563 Phosphate acyltransferases B565_3890 SM00829 Enoylreductase B565_3891 SM00354 helix_turn _helix lactose operon repressor B565_3901 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain B565_3901 SM01232 B565_3901 B565_3913 SM00528 Domain in histone-like proteins of HNS family B565_3928 SM00881 CoA binding domain B565_3936 SM00448 cheY-homologous receiver domain B565_3936 SM00862 Transcriptional regulatory protein, C terminal B565_3937 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3937 SM00387 Histidine kinase-like ATPases B565_3937 SM00388 His Kinase A (phosphoacceptor) domain B565_3945 SM00836 DALR anticodon binding domain B565_3947 SM00052 Putative diguanylate phosphodiesterase B565_3949 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). B565_3949 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain B565_3950 SM00345 helix_turn_helix gluconate operon transcriptional repressor B565_3950 SM00866 B565_3950 B565_3953 SM00354 helix_turn _helix lactose operon repressor B565_3957 SM00382 ATPases associated with a variety of cellular activities B565_3958 SM00382 ATPases associated with a variety of cellular activities B565_3959 SM00450 Rhodanese Homology Domain B565_3963 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_3963 SM00267 diguanylate cyclase B565_3967 SM00357 Cold shock protein domain B565_3967 SM00382 ATPases associated with a variety of cellular activities B565_3967 SM00959 Rho termination factor, N-terminal domain B565_3969 SM00487 DEAD-like helicases superfamily B565_3969 SM00490 helicase superfamily c-terminal domain B565_3973 SM00062 Bacterial periplasmic substrate-binding proteins B565_3974 SM00052 Putative diguanylate phosphodiesterase B565_3974 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) B565_3974 SM00091 PAS domain B565_3974 SM00267 diguanylate cyclase B565_3976 SM00495 Chitin-binding domain type 3 B565_3976 SM00636 B565_3976 B565_3977 SM00495 Chitin-binding domain type 3 B565_3978 SM01004 Delta-aminolevulinic acid dehydratase B565_3995 SM00421 helix_turn_helix, Lux Regulon B565_3997 SM00420 helix_turn_helix, Deoxyribose operon repressor B565_3997 SM01134 B565_3997 B565_3998 SM00448 cheY-homologous receiver domain B565_3998 SM00862 Transcriptional regulatory protein, C terminal B565_3999 SM00387 Histidine kinase-like ATPases B565_3999 SM00388 His Kinase A (phosphoacceptor) domain B565_4005 SM00382 ATPases associated with a variety of cellular activities B565_4013 SM00470 ParB-like nuclease domain B565_4016 SM01228 B565_4016 B565_4019 SM00382 ATPases associated with a variety of cellular activities B565_4020 SM00382 ATPases associated with a variety of cellular activities B565_4026 SM00382 ATPases associated with a variety of cellular activities B565_4028 SM00062 Bacterial periplasmic substrate-binding proteins B565_4028 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins.