locus-tag class description LOS88_00005 PF00308 Bacterial dnaA protein LOS88_00005 PF08299 Bacterial dnaA protein helix-turn-helix LOS88_00005 PF11638 DnaA N-terminal domain LOS88_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LOS88_00010 PF02767 DNA polymerase III beta subunit, central domain LOS88_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LOS88_00015 PF02463 RecF/RecN/SMC N terminal domain LOS88_00020 PF00204 DNA gyrase B LOS88_00020 PF00986 DNA gyrase B subunit, carboxyl terminus LOS88_00020 PF18053 DNA gyrase B subunit insert domain LOS88_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_00020 PF01751 Toprim domain LOS88_00035 PF01965 DJ-1/PfpI family LOS88_00035 PF12833 Helix-turn-helix domain LOS88_00040 PF12706 Beta-lactamase superfamily domain LOS88_00045 PF00011 Hsp20/alpha crystallin family LOS88_00050 PF00011 Hsp20/alpha crystallin family LOS88_00055 PF00155 Aminotransferase class I and II LOS88_00070 PF07690 Major Facilitator Superfamily LOS88_00075 PF00072 Response regulator receiver domain LOS88_00075 PF00486 Transcriptional regulatory protein, C terminal LOS88_00080 PF13493 Domain of unknown function (DUF4118) LOS88_00080 PF13492 GAF domain LOS88_00080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_00080 PF00512 His Kinase A (phospho-acceptor) domain LOS88_00080 PF02702 Osmosensitive K+ channel His kinase sensor domain LOS88_00085 PF02669 K+-transporting ATPase, c chain LOS88_00095 PF03814 Potassium-transporting ATPase A subunit LOS88_00100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_00100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_00105 PF00512 His Kinase A (phospho-acceptor) domain LOS88_00105 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_00110 PF00873 AcrB/AcrD/AcrF family LOS88_00115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_00120 PF00440 Bacterial regulatory proteins, tetR family LOS88_00155 PF12146 Serine aminopeptidase, S33 LOS88_00160 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_00165 PF00588 SpoU rRNA Methylase family LOS88_00165 PF12105 SpoU, rRNA methylase, C-terminal LOS88_00170 PF13291 ACT domain LOS88_00170 PF04607 Region found in RelA / SpoT proteins LOS88_00170 PF02824 TGS domain LOS88_00175 PF01192 RNA polymerase Rpb6 LOS88_00180 PF00625 Guanylate kinase LOS88_00185 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LOS88_00200 PF00892 EamA-like transporter family LOS88_00220 PF03466 LysR substrate binding domain LOS88_00220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_00225 PF00579 tRNA synthetases class I (W and Y) LOS88_00230 PF00582 Universal stress protein family LOS88_00235 PF07055 Enoyl reductase FAD binding domain LOS88_00235 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LOS88_00235 PF12241 Trans-2-enoyl-CoA reductase catalytic region LOS88_00240 PF00210 Ferritin-like domain LOS88_00250 PF06580 Histidine kinase LOS88_00250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_00250 PF07694 5TMR of 5TMR-LYT LOS88_00255 PF04397 LytTr DNA-binding domain LOS88_00255 PF00072 Response regulator receiver domain LOS88_00260 PF07690 Major Facilitator Superfamily LOS88_00265 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LOS88_00265 PF02222 ATP-grasp domain LOS88_00270 PF00731 AIR carboxylase LOS88_00285 PF03466 LysR substrate binding domain LOS88_00285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_00290 PF00593 TonB dependent receptor LOS88_00290 PF07715 TonB-dependent Receptor Plug Domain LOS88_00295 PF01177 Asp/Glu/Hydantoin racemase LOS88_00325 PF00899 ThiF family LOS88_00330 PF02657 Fe-S metabolism associated domain LOS88_00335 PF00266 Aminotransferase class-V LOS88_00340 PF13361 UvrD-like helicase C-terminal domain LOS88_00340 PF00580 UvrD/REP helicase N-terminal domain LOS88_00345 PF00563 EAL domain LOS88_00345 PF00990 Diguanylate cyclase, GGDEF domain LOS88_00345 PF03707 Bacterial signalling protein N terminal repeat LOS88_00350 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LOS88_00355 PF00107 Zinc-binding dehydrogenase LOS88_00355 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_00360 PF00155 Aminotransferase class I and II LOS88_00365 PF08360 QacR-like protein, C-terminal region LOS88_00365 PF00440 Bacterial regulatory proteins, tetR family LOS88_00370 PF01370 NAD dependent epimerase/dehydratase family LOS88_00385 PF00535 Glycosyl transferase family 2 LOS88_00445 PF13361 UvrD-like helicase C-terminal domain LOS88_00445 PF00580 UvrD/REP helicase N-terminal domain LOS88_00450 PF02608 ABC transporter substrate-binding protein PnrA-like LOS88_00455 PF00005 ABC transporter LOS88_00460 PF02653 Branched-chain amino acid transport system / permease component LOS88_00465 PF02653 Branched-chain amino acid transport system / permease component LOS88_00470 PF00149 Calcineurin-like phosphoesterase LOS88_00470 PF02872 5'-nucleotidase, C-terminal domain LOS88_00480 PF00571 CBS domain LOS88_00480 PF01769 Divalent cation transporter LOS88_00480 PF03448 MgtE intracellular N domain LOS88_00485 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LOS88_00485 PF10414 Sirohaem synthase dimerisation region LOS88_00485 PF14824 Sirohaem biosynthesis protein central LOS88_00490 PF01226 Formate/nitrite transporter LOS88_00495 PF13806 Rieske-like [2Fe-2S] domain LOS88_00500 PF04324 BFD-like [2Fe-2S] binding domain LOS88_00500 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LOS88_00500 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LOS88_00500 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_00500 PF18267 Rubredoxin NAD+ reductase C-terminal domain LOS88_00515 PF00005 ABC transporter LOS88_00520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_00535 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_00535 PF07724 AAA domain (Cdc48 subfamily) LOS88_00535 PF10431 C-terminal, D2-small domain, of ClpB protein LOS88_00540 PF00227 Proteasome subunit LOS88_00550 PF03485 Arginyl tRNA synthetase N terminal domain LOS88_00550 PF05746 DALR anticodon binding domain LOS88_00550 PF00750 tRNA synthetases class I (R) LOS88_00560 PF04542 Sigma-70 region 2 LOS88_00560 PF04545 Sigma-70, region 4 LOS88_00570 PF02673 Bacitracin resistance protein BacA LOS88_00575 PF01263 Aldose 1-epimerase LOS88_00580 PF08544 GHMP kinases C terminal LOS88_00580 PF10509 Galactokinase galactose-binding signature LOS88_00580 PF00288 GHMP kinases N terminal domain LOS88_00585 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LOS88_00585 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LOS88_00590 PF16363 GDP-mannose 4,6 dehydratase LOS88_00595 PF00356 Bacterial regulatory proteins, lacI family LOS88_00600 PF02929 Beta galactosidase small chain LOS88_00600 PF00703 Glycosyl hydrolases family 2 LOS88_00600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LOS88_00600 PF02837 Glycosyl hydrolases family 2, sugar binding domain LOS88_00600 PF16353 Domain of unknown function(DUF4981) LOS88_00605 PF13407 Periplasmic binding protein domain LOS88_00610 PF00005 ABC transporter LOS88_00615 PF02653 Branched-chain amino acid transport system / permease component LOS88_00620 PF02743 Cache domain LOS88_00620 PF00672 HAMP domain LOS88_00620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_00625 PF05958 tRNA (Uracil-5-)-methyltransferase LOS88_00660 PF09940 Domain of unknown function (DUF2172) LOS88_00660 PF16254 Domain of unknown function (DUF4910) LOS88_00660 PF16221 winged helix-turn-helix LOS88_00670 PF02903 Alpha amylase, N-terminal ig-like domain LOS88_00670 PF00128 Alpha amylase, catalytic domain LOS88_00685 PF00012 Hsp70 protein LOS88_00690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LOS88_00690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LOS88_00695 PF05981 CreA protein LOS88_00710 PF01258 Prokaryotic dksA/traR C4-type zinc finger LOS88_00715 PF00120 Glutamine synthetase, catalytic domain LOS88_00720 PF00202 Aminotransferase class-III LOS88_00725 PF13416 Bacterial extracellular solute-binding protein LOS88_00730 PF13416 Bacterial extracellular solute-binding protein LOS88_00735 PF08402 TOBE domain LOS88_00735 PF00005 ABC transporter LOS88_00740 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_00745 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_00750 PF03473 MOSC domain LOS88_00750 PF03475 3-alpha domain LOS88_00765 PF03061 Thioesterase superfamily LOS88_00770 PF09382 RQC domain LOS88_00770 PF16124 RecQ zinc-binding LOS88_00770 PF00570 HRDC domain LOS88_00770 PF00271 Helicase conserved C-terminal domain LOS88_00770 PF00270 DEAD/DEAH box helicase LOS88_00775 PF00034 Cytochrome c LOS88_00780 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LOS88_00790 PF02592 Putative vitamin uptake transporter LOS88_00795 PF03737 Aldolase/RraA LOS88_00800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_00800 PF00672 HAMP domain LOS88_00810 PF01197 Ribosomal protein L31 LOS88_00815 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LOS88_00815 PF18074 Primosomal protein N C-terminal domain LOS88_00815 PF17764 3′ DNA-binding domain (3′BD) LOS88_00815 PF00271 Helicase conserved C-terminal domain LOS88_00815 PF00270 DEAD/DEAH box helicase LOS88_00825 PF13460 NAD(P)H-binding LOS88_00825 PF11066 Protein of unknown function (DUF2867) LOS88_00830 PF03222 Tryptophan/tyrosine permease family LOS88_00835 PF00390 Malic enzyme, N-terminal domain LOS88_00835 PF03949 Malic enzyme, NAD binding domain LOS88_00840 PF03631 Virulence factor BrkB LOS88_00845 PF02580 D-Tyr-tRNA(Tyr) deacylase LOS88_00850 PF17284 Spermidine synthase tetramerisation domain LOS88_00855 PF00583 Acetyltransferase (GNAT) family LOS88_00855 PF09500 Putative thioesterase (yiiD_Cterm) LOS88_00865 PF00270 DEAD/DEAH box helicase LOS88_00865 PF00271 Helicase conserved C-terminal domain LOS88_00865 PF17191 RecG wedge domain LOS88_00870 PF13091 PLD-like domain LOS88_00875 PF02447 GntP family permease LOS88_00880 PF01202 Shikimate kinase LOS88_00885 PF00920 Dehydratase family LOS88_00890 PF01081 KDPG and KHG aldolase LOS88_00895 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LOS88_00895 PF00356 Bacterial regulatory proteins, lacI family LOS88_00905 PF01551 Peptidase family M23 LOS88_00910 PF01676 Metalloenzyme superfamily LOS88_00910 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LOS88_00915 PF00581 Rhodanese-like domain LOS88_00920 PF02556 Preprotein translocase subunit SecB LOS88_00925 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LOS88_00925 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LOS88_00930 PF01106 NifU-like domain LOS88_00930 PF01521 Iron-sulphur cluster biosynthesis LOS88_00935 PF00156 Phosphoribosyl transferase domain LOS88_00940 PF00561 alpha/beta hydrolase fold LOS88_00960 PF16921 Tex protein YqgF-like domain LOS88_00960 PF09371 Tex-like protein N-terminal domain LOS88_00960 PF00575 S1 RNA binding domain LOS88_00960 PF17674 HHH domain LOS88_00965 PF03449 Transcription elongation factor, N-terminal LOS88_00965 PF01272 Transcription elongation factor, GreA/GreB, C-term LOS88_00970 PF00486 Transcriptional regulatory protein, C terminal LOS88_00970 PF00072 Response regulator receiver domain LOS88_00975 PF00672 HAMP domain LOS88_00975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_00975 PF00512 His Kinase A (phospho-acceptor) domain LOS88_00985 PF00338 Ribosomal protein S10p/S20e LOS88_00990 PF00297 Ribosomal protein L3 LOS88_00995 PF00573 Ribosomal protein L4/L1 family LOS88_01000 PF00276 Ribosomal protein L23 LOS88_01005 PF03947 Ribosomal Proteins L2, C-terminal domain LOS88_01005 PF00181 Ribosomal Proteins L2, RNA binding domain LOS88_01010 PF00203 Ribosomal protein S19 LOS88_01015 PF00237 Ribosomal protein L22p/L17e LOS88_01020 PF00189 Ribosomal protein S3, C-terminal domain LOS88_01020 PF07650 KH domain LOS88_01025 PF00252 Ribosomal protein L16p/L10e LOS88_01030 PF00831 Ribosomal L29 protein LOS88_01035 PF00366 Ribosomal protein S17 LOS88_01040 PF00238 Ribosomal protein L14p/L23e LOS88_01045 PF00467 KOW motif LOS88_01045 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LOS88_01050 PF00281 Ribosomal protein L5 LOS88_01050 PF00673 ribosomal L5P family C-terminus LOS88_01055 PF00253 Ribosomal protein S14p/S29e LOS88_01060 PF00410 Ribosomal protein S8 LOS88_01065 PF00347 Ribosomal protein L6 LOS88_01070 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LOS88_01075 PF03719 Ribosomal protein S5, C-terminal domain LOS88_01075 PF00333 Ribosomal protein S5, N-terminal domain LOS88_01080 PF00327 Ribosomal protein L30p/L7e LOS88_01085 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LOS88_01090 PF00344 SecY translocase LOS88_01095 PF00444 Ribosomal protein L36 LOS88_01100 PF00416 Ribosomal protein S13/S18 LOS88_01105 PF00411 Ribosomal protein S11 LOS88_01110 PF00163 Ribosomal protein S4/S9 N-terminal domain LOS88_01110 PF01479 S4 domain LOS88_01115 PF01000 RNA polymerase Rpb3/RpoA insert domain LOS88_01115 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LOS88_01115 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LOS88_01120 PF01196 Ribosomal protein L17 LOS88_01165 PF01695 IstB-like ATP binding protein LOS88_01170 PF00665 Integrase core domain LOS88_01180 PF07715 TonB-dependent Receptor Plug Domain LOS88_01180 PF00593 TonB dependent receptor LOS88_01185 PF17151 Periplasmic sensor domain LOS88_01185 PF00990 Diguanylate cyclase, GGDEF domain LOS88_01190 PF00512 His Kinase A (phospho-acceptor) domain LOS88_01190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_01190 PF00672 HAMP domain LOS88_01195 PF00072 Response regulator receiver domain LOS88_01195 PF00486 Transcriptional regulatory protein, C terminal LOS88_01205 PF12729 Four helix bundle sensory module for signal transduction LOS88_01205 PF00672 HAMP domain LOS88_01205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_01215 PF03466 LysR substrate binding domain LOS88_01215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_01225 PF02678 Pirin LOS88_01225 PF17954 Quercetinase C-terminal cupin domain LOS88_01230 PF07681 DoxX LOS88_01235 PF17946 RecC C-terminal domain LOS88_01240 PF12705 PD-(D/E)XK nuclease superfamily LOS88_01240 PF00580 UvrD/REP helicase N-terminal domain LOS88_01240 PF13361 UvrD-like helicase C-terminal domain LOS88_01245 PF13538 UvrD-like helicase C-terminal domain LOS88_01280 PF00392 Bacterial regulatory proteins, gntR family LOS88_01280 PF07702 UTRA domain LOS88_01295 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_01305 PF00005 ABC transporter LOS88_01305 PF08402 TOBE domain LOS88_01315 PF00990 Diguanylate cyclase, GGDEF domain LOS88_01335 PF01053 Cys/Met metabolism PLP-dependent enzyme LOS88_01345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_01345 PF12793 Sugar transport-related sRNA regulator N-term LOS88_01350 PF00141 Peroxidase LOS88_01365 PF03280 Proteobacterial lipase chaperone protein LOS88_01370 PF00561 alpha/beta hydrolase fold LOS88_01375 PF01479 S4 domain LOS88_01375 PF00579 tRNA synthetases class I (W and Y) LOS88_01380 PF00196 Bacterial regulatory proteins, luxR family LOS88_01400 PF00199 Catalase LOS88_01400 PF06628 Catalase-related immune-responsive LOS88_01405 PF00583 Acetyltransferase (GNAT) family LOS88_01425 PF10458 Valyl tRNA synthetase tRNA binding arm LOS88_01425 PF08264 Anticodon-binding domain of tRNA LOS88_01425 PF00133 tRNA synthetases class I (I, L, M and V) LOS88_01430 PF04364 DNA polymerase III chi subunit, HolC LOS88_01435 PF02789 Cytosol aminopeptidase family, N-terminal domain LOS88_01435 PF00883 Cytosol aminopeptidase family, catalytic domain LOS88_01440 PF03739 Lipopolysaccharide export system permease LptF/LptG LOS88_01445 PF03739 Lipopolysaccharide export system permease LptF/LptG LOS88_01490 PF04984 Phage tail sheath protein subtilisin-like domain LOS88_01490 PF17482 Phage tail sheath C-terminal domain LOS88_01705 PF00717 Peptidase S24-like LOS88_01705 PF01381 Helix-turn-helix LOS88_01715 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_01715 PF00589 Phage integrase family LOS88_01720 PF00589 Phage integrase family LOS88_01730 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_01730 PF00589 Phage integrase family LOS88_01785 PF07715 TonB-dependent Receptor Plug Domain LOS88_01785 PF00593 TonB dependent receptor LOS88_01795 PF00768 D-alanyl-D-alanine carboxypeptidase LOS88_01800 PF13520 Amino acid permease LOS88_01815 PF13609 Gram-negative porin LOS88_01820 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LOS88_01835 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase LOS88_01840 PF02602 Uroporphyrinogen-III synthase HemD LOS88_01845 PF03900 Porphobilinogen deaminase, C-terminal domain LOS88_01845 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LOS88_01850 PF12633 Adenylate cyclase NT domain LOS88_01850 PF01295 Adenylate cyclase, class-I LOS88_01855 PF02230 Phospholipase/Carboxylesterase LOS88_01860 PF01491 Frataxin-like domain LOS88_01870 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LOS88_01870 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LOS88_01875 PF01678 Diaminopimelate epimerase LOS88_01885 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_01885 PF00589 Phage integrase family LOS88_01890 PF13419 Haloacid dehalogenase-like hydrolase LOS88_01900 PF00027 Cyclic nucleotide-binding domain LOS88_01900 PF13545 Crp-like helix-turn-helix domain LOS88_01910 PF07722 Peptidase C26 LOS88_01915 PF04751 Protein of unknown function (DUF615) LOS88_01920 PF01523 Putative modulator of DNA gyrase LOS88_01925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LOS88_01930 PF01722 BolA-like protein LOS88_01940 PF05494 MlaC protein LOS88_01945 PF02470 MlaD protein LOS88_01950 PF02405 Permease MlaE LOS88_01955 PF00005 ABC transporter LOS88_01960 PF00571 CBS domain LOS88_01960 PF01380 SIS domain LOS88_01970 PF06835 Lipopolysaccharide-assembly, LptC-related LOS88_01975 PF03968 OstA-like protein LOS88_01980 PF00005 ABC transporter LOS88_01980 PF12399 Branched-chain amino acid ATP-binding cassette transporter LOS88_01985 PF04552 Sigma-54, DNA binding domain LOS88_01985 PF04963 Sigma-54 factor, core binding domain LOS88_01985 PF00309 Sigma-54 factor, Activator interacting domain (AID) LOS88_01990 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LOS88_01995 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_02000 PF03668 P-loop ATPase protein family LOS88_02005 PF00381 PTS HPr component phosphorylation site LOS88_02010 PF00874 PRD domain LOS88_02010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_02010 PF05043 Mga helix-turn-helix domain LOS88_02010 PF08279 HTH domain LOS88_02015 PF07071 KDGP aldolase LOS88_02020 PF03841 L-seryl-tRNA selenium transferase LOS88_02025 PF01979 Amidohydrolase family LOS88_02055 PF13180 PDZ domain LOS88_02060 PF00595 PDZ domain LOS88_02060 PF13180 PDZ domain LOS88_02070 PF03969 AFG1-like ATPase LOS88_02075 PF00572 Ribosomal protein L13 LOS88_02080 PF00380 Ribosomal protein S9/S16 LOS88_02085 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal LOS88_02085 PF00355 Rieske [2Fe-2S] domain LOS88_02090 PF00032 Cytochrome b(C-terminal)/b6/petD LOS88_02090 PF00033 Cytochrome b/b6/petB LOS88_02095 PF02167 Cytochrome C1 family LOS88_02100 PF00043 Glutathione S-transferase, C-terminal domain LOS88_02100 PF02798 Glutathione S-transferase, N-terminal domain LOS88_02105 PF04386 Stringent starvation protein B LOS88_02110 PF04972 BON domain LOS88_02115 PF13580 SIS domain LOS88_02120 PF02021 Uncharacterised protein family UPF0102 LOS88_02125 PF04348 LppC putative lipoprotein LOS88_02130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LOS88_02140 PF02381 MraZ protein, putative antitoxin-like LOS88_02145 PF01795 MraW methylase family LOS88_02150 PF04999 Cell division protein FtsL LOS88_02155 PF00905 Penicillin binding protein transpeptidase domain LOS88_02155 PF03717 Penicillin-binding Protein dimerisation domain LOS88_02160 PF01225 Mur ligase family, catalytic domain LOS88_02160 PF02875 Mur ligase family, glutamate ligase domain LOS88_02160 PF08245 Mur ligase middle domain LOS88_02165 PF01225 Mur ligase family, catalytic domain LOS88_02165 PF02875 Mur ligase family, glutamate ligase domain LOS88_02165 PF08245 Mur ligase middle domain LOS88_02170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 LOS88_02170 PF00953 Glycosyl transferase family 4 LOS88_02175 PF02875 Mur ligase family, glutamate ligase domain LOS88_02175 PF08245 Mur ligase middle domain LOS88_02180 PF01098 Cell cycle protein LOS88_02185 PF03033 Glycosyltransferase family 28 N-terminal domain LOS88_02185 PF04101 Glycosyltransferase family 28 C-terminal domain LOS88_02190 PF01225 Mur ligase family, catalytic domain LOS88_02190 PF02875 Mur ligase family, glutamate ligase domain LOS88_02190 PF08245 Mur ligase middle domain LOS88_02195 PF03799 Cell division protein FtsQ LOS88_02195 PF08478 POTRA domain, FtsQ-type LOS88_02200 PF02491 SHS2 domain inserted in FTSA LOS88_02205 PF12327 FtsZ family, C-terminal domain LOS88_02205 PF00091 Tubulin/FtsZ family, GTPase domain LOS88_02210 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase LOS88_02220 PF01043 SecA preprotein cross-linking domain LOS88_02220 PF07517 SecA DEAD-like domain LOS88_02220 PF07516 SecA Wing and Scaffold domain LOS88_02220 PF02810 SEC-C motif LOS88_02230 PF00293 NUDIX domain LOS88_02235 PF03884 DNA gyrase inhibitor YacG LOS88_02240 PF07072 Cell division protein LOS88_02245 PF01121 Dephospho-CoA kinase LOS88_02250 PF01478 Type IV leader peptidase family LOS88_02250 PF06750 Bacterial Peptidase A24 N-terminal domain LOS88_02255 PF00482 Type II secretion system (T2SS), protein F LOS88_02260 PF00437 Type II/IV secretion system protein LOS88_02260 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LOS88_02270 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LOS88_02270 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LOS88_02280 PF01510 N-acetylmuramoyl-L-alanine amidase LOS88_02285 PF07729 FCD domain LOS88_02285 PF00392 Bacterial regulatory proteins, gntR family LOS88_02290 PF17831 Pyruvate dehydrogenase E1 component middle domain LOS88_02290 PF00456 Transketolase, thiamine diphosphate binding domain LOS88_02295 PF00364 Biotin-requiring enzyme LOS88_02295 PF02817 e3 binding domain LOS88_02295 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LOS88_02300 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_02305 PF03707 Bacterial signalling protein N terminal repeat LOS88_02305 PF00563 EAL domain LOS88_02305 PF00990 Diguanylate cyclase, GGDEF domain LOS88_02310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_02310 PF12729 Four helix bundle sensory module for signal transduction LOS88_02310 PF00672 HAMP domain LOS88_02315 PF01734 Patatin-like phospholipase LOS88_02320 PF00330 Aconitase family (aconitate hydratase) LOS88_02320 PF06434 Aconitate hydratase 2 N-terminus LOS88_02320 PF11791 Aconitate B N-terminal domain LOS88_02325 PF12792 CSS motif domain associated with EAL LOS88_02325 PF00563 EAL domain LOS88_02335 PF02492 CobW/HypB/UreG, nucleotide-binding domain LOS88_02335 PF07683 Cobalamin synthesis protein cobW C-terminal domain LOS88_02340 PF00873 AcrB/AcrD/AcrF family LOS88_02355 PF07690 Major Facilitator Superfamily LOS88_02365 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LOS88_02370 PF02152 Dihydroneopterin aldolase LOS88_02375 PF02660 Glycerol-3-phosphate acyltransferase LOS88_02400 PF07670 Nucleoside recognition LOS88_02415 PF14698 Argininosuccinate lyase C-terminal LOS88_02415 PF00206 Lyase LOS88_02420 PF00764 Arginosuccinate synthase LOS88_02425 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LOS88_02425 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LOS88_02430 PF00696 Amino acid kinase family LOS88_02435 PF01118 Semialdehyde dehydrogenase, NAD binding domain LOS88_02435 PF02774 Semialdehyde dehydrogenase, dimerisation domain LOS88_02440 PF01546 Peptidase family M20/M25/M40 LOS88_02440 PF07687 Peptidase dimerisation domain LOS88_02445 PF00311 Phosphoenolpyruvate carboxylase LOS88_02450 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_02460 PF17151 Periplasmic sensor domain LOS88_02460 PF00990 Diguanylate cyclase, GGDEF domain LOS88_02470 PF06055 Exopolysaccharide synthesis, ExoD LOS88_02480 PF00990 Diguanylate cyclase, GGDEF domain LOS88_02485 PF00909 Ammonium Transporter Family LOS88_02490 PF05433 Glycine zipper 2TM domain LOS88_02495 PF00583 Acetyltransferase (GNAT) family LOS88_02500 PF11756 Nitrous oxide-stimulated promoter LOS88_02505 PF00557 Metallopeptidase family M24 LOS88_02505 PF01321 Creatinase/Prolidase N-terminal domain LOS88_02510 PF00392 Bacterial regulatory proteins, gntR family LOS88_02515 PF01293 Phosphoenolpyruvate carboxykinase LOS88_02520 PF01430 Hsp33 protein LOS88_02525 PF01479 S4 domain LOS88_02535 PF00293 NUDIX domain LOS88_02540 PF01594 AI-2E family transporter LOS88_02570 PF00465 Iron-containing alcohol dehydrogenase LOS88_02575 PF03610 PTS system fructose IIA component LOS88_02575 PF05524 PEP-utilising enzyme, N-terminal LOS88_02575 PF00391 PEP-utilising enzyme, mobile domain LOS88_02575 PF00381 PTS HPr component phosphorylation site LOS88_02580 PF02734 DAK2 domain LOS88_02585 PF02733 Dak1 domain LOS88_02590 PF00860 Permease family LOS88_02595 PF00313 'Cold-shock' DNA-binding domain LOS88_02600 PF13808 DDE_Tnp_1-associated LOS88_02600 PF01609 Transposase DDE domain LOS88_02610 PF16916 Dimerisation domain of Zinc Transporter LOS88_02610 PF01545 Cation efflux family LOS88_02620 PF00436 Single-strand binding protein family LOS88_02625 PF00196 Bacterial regulatory proteins, luxR family LOS88_02630 PF10627 Curli assembly protein CsgE LOS88_02640 PF03783 Curli production assembly/transport component CsgG LOS88_02660 PF00005 ABC transporter LOS88_02660 PF17755 UvrA DNA-binding domain LOS88_02660 PF17760 UvrA interaction domain LOS88_02665 PF08448 PAS fold LOS88_02665 PF00990 Diguanylate cyclase, GGDEF domain LOS88_02670 PF03922 OmpW family LOS88_02675 PF00672 HAMP domain LOS88_02675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_02690 PF02219 Methylenetetrahydrofolate reductase LOS88_02700 PF03594 Benzoate membrane transport protein LOS88_02705 PF07883 Cupin domain LOS88_02705 PF01381 Helix-turn-helix LOS88_02740 PF04363 Protein of unknown function (DUF496) LOS88_02760 PF02464 Competence-damaged protein LOS88_02760 PF00994 Probable molybdopterin binding domain LOS88_02770 PF04204 Homoserine O-succinyltransferase LOS88_02780 PF01037 Lrp/AsnC ligand binding domain LOS88_02785 PF00884 Sulfatase LOS88_02805 PF16657 Maltogenic Amylase, C-terminal domain LOS88_02805 PF02903 Alpha amylase, N-terminal ig-like domain LOS88_02805 PF00128 Alpha amylase, catalytic domain LOS88_02825 PF00106 short chain dehydrogenase LOS88_02830 PF03577 Peptidase family C69 LOS88_02840 PF00465 Iron-containing alcohol dehydrogenase LOS88_02845 PF02142 MGS-like domain LOS88_02850 PF00210 Ferritin-like domain LOS88_02865 PF17176 tRNA-binding domain LOS88_02865 PF05127 Helicase LOS88_02865 PF13718 GNAT acetyltransferase 2 LOS88_02865 PF08351 Domain of unknown function (DUF1726) LOS88_02870 PF00106 short chain dehydrogenase LOS88_02875 PF00072 Response regulator receiver domain LOS88_02875 PF01584 CheW-like domain LOS88_02885 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LOS88_02885 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LOS88_02890 PF02698 DUF218 domain LOS88_02895 PF01752 Collagenase LOS88_02895 PF08453 Peptidase family M9 N-terminal LOS88_02900 PF00501 AMP-binding enzyme LOS88_02905 PF13378 Enolase C-terminal domain-like LOS88_02910 PF00378 Enoyl-CoA hydratase/isomerase LOS88_02915 PF12697 Alpha/beta hydrolase family LOS88_02920 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_02920 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LOS88_02920 PF16582 Middle domain of thiamine pyrophosphate LOS88_02925 PF00425 chorismate binding enzyme LOS88_02930 PF01040 UbiA prenyltransferase family LOS88_02955 PF00271 Helicase conserved C-terminal domain LOS88_02955 PF00270 DEAD/DEAH box helicase LOS88_02955 PF03880 DbpA RNA binding domain LOS88_02960 PF07662 Na+ dependent nucleoside transporter C-terminus LOS88_02960 PF01773 Na+ dependent nucleoside transporter N-terminus LOS88_02960 PF07670 Nucleoside recognition LOS88_02965 PF04307 LexA-binding, inner membrane-associated putative hydrolase LOS88_02970 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LOS88_02975 PF01544 CorA-like Mg2+ transporter protein LOS88_02990 PF01556 DnaJ C terminal domain LOS88_02990 PF00226 DnaJ domain LOS88_02990 PF00684 DnaJ central domain LOS88_03000 PF05068 Mannitol repressor LOS88_03005 PF08125 Mannitol dehydrogenase C-terminal domain LOS88_03005 PF01232 Mannitol dehydrogenase Rossmann domain LOS88_03010 PF02378 Phosphotransferase system, EIIC LOS88_03010 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_03010 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_03015 PF03279 Bacterial lipid A biosynthesis acyltransferase LOS88_03020 PF00294 pfkB family carbohydrate kinase LOS88_03020 PF01467 Cytidylyltransferase-like LOS88_03025 PF02321 Outer membrane efflux protein LOS88_03030 PF00293 NUDIX domain LOS88_03035 PF06853 Protein of unknown function (DUF1249) LOS88_03040 PF00149 Calcineurin-like phosphoesterase LOS88_03045 PF05728 Uncharacterised protein family (UPF0227) LOS88_03050 PF00293 NUDIX domain LOS88_03055 PF07869 Protein of unknown function (DUF1656) LOS88_03060 PF00529 HlyD membrane-fusion protein of T1SS LOS88_03060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_03065 PF04632 Fusaric acid resistance protein family LOS88_03070 PF00204 DNA gyrase B LOS88_03070 PF00986 DNA gyrase B subunit, carboxyl terminus LOS88_03070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_03070 PF01751 Toprim domain LOS88_03075 PF00521 DNA gyrase/topoisomerase IV, subunit A LOS88_03075 PF03989 DNA gyrase C-terminal domain, beta-propeller LOS88_03085 PF01609 Transposase DDE domain LOS88_03085 PF13808 DDE_Tnp_1-associated LOS88_03090 PF00854 POT family LOS88_03110 PF01556 DnaJ C terminal domain LOS88_03110 PF00226 DnaJ domain LOS88_03110 PF00684 DnaJ central domain LOS88_03125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_03125 PF03466 LysR substrate binding domain LOS88_03130 PF00578 AhpC/TSA family LOS88_03150 PF01553 Acyltransferase LOS88_03155 PF04012 PspA/IM30 family LOS88_03170 PF01541 GIY-YIG catalytic domain LOS88_03180 PF00892 EamA-like transporter family LOS88_03185 PF03167 Uracil DNA glycosylase superfamily LOS88_03190 PF00892 EamA-like transporter family LOS88_03195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_03195 PF03466 LysR substrate binding domain LOS88_03200 PF00950 ABC 3 transport family LOS88_03205 PF00005 ABC transporter LOS88_03210 PF01297 Zinc-uptake complex component A periplasmic LOS88_03240 PF01476 LysM domain LOS88_03240 PF08525 Opacity-associated protein A N-terminal motif LOS88_03240 PF01551 Peptidase family M23 LOS88_03245 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LOS88_03250 PF04222 Protein of unknown function (DUF416) LOS88_03265 PF02028 BCCT, betaine/carnitine/choline family transporter LOS88_03270 PF12627 Probable RNA and SrmB- binding site of polymerase A LOS88_03270 PF01743 Poly A polymerase head domain LOS88_03270 PF01966 HD domain LOS88_03275 PF10576 Iron-sulfur binding domain of endonuclease III LOS88_03275 PF00633 Helix-hairpin-helix motif LOS88_03275 PF00730 HhH-GPD superfamily base excision DNA repair protein LOS88_03275 PF14815 NUDIX domain LOS88_03280 PF04362 Bacterial Fe(2+) trafficking LOS88_03285 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain LOS88_03285 PF01464 Transglycosylase SLT domain LOS88_03290 PF04076 Bacterial OB fold (BOF) protein LOS88_03295 PF00657 GDSL-like Lipase/Acylhydrolase LOS88_03300 PF00691 OmpA family LOS88_03300 PF01389 OmpA-like transmembrane domain LOS88_03305 PF00990 Diguanylate cyclase, GGDEF domain LOS88_03310 PF17876 Cold shock domain LOS88_03310 PF08461 Ribonuclease R winged-helix domain LOS88_03310 PF08206 Ribonuclease B OB domain LOS88_03310 PF00773 RNB domain LOS88_03310 PF00575 S1 RNA binding domain LOS88_03315 PF08032 RNA 2'-O ribose methyltransferase substrate binding LOS88_03315 PF00588 SpoU rRNA Methylase family LOS88_03325 PF13673 Acetyltransferase (GNAT) domain LOS88_03330 PF00270 DEAD/DEAH box helicase LOS88_03330 PF00271 Helicase conserved C-terminal domain LOS88_03335 PF05175 Methyltransferase small domain LOS88_03340 PF05525 Branched-chain amino acid transport protein LOS88_03345 PF05525 Branched-chain amino acid transport protein LOS88_03360 PF01475 Ferric uptake regulator family LOS88_03365 PF01207 Dihydrouridine synthase (Dus) LOS88_03380 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_03390 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_03395 PF10952 Protein of unknown function (DUF2753) LOS88_03400 PF00378 Enoyl-CoA hydratase/isomerase LOS88_03420 PF03129 Anticodon binding domain LOS88_03420 PF04073 Aminoacyl-tRNA editing domain LOS88_03420 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LOS88_03425 PF01938 TRAM domain LOS88_03425 PF05958 tRNA (Uracil-5-)-methyltransferase LOS88_03435 PF02470 MlaD protein LOS88_03440 PF04403 Paraquat-inducible protein A LOS88_03445 PF17209 Hfq protein LOS88_03450 PF13419 Haloacid dehalogenase-like hydrolase LOS88_03460 PF00563 EAL domain LOS88_03460 PF00360 Phytochrome region LOS88_03460 PF01590 GAF domain LOS88_03460 PF00990 Diguanylate cyclase, GGDEF domain LOS88_03465 PF00773 RNB domain LOS88_03465 PF08206 Ribonuclease B OB domain LOS88_03465 PF17876 Cold shock domain LOS88_03470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_03470 PF03466 LysR substrate binding domain LOS88_03475 PF00765 Autoinducer synthase LOS88_03480 PF00196 Bacterial regulatory proteins, luxR family LOS88_03480 PF03472 Autoinducer binding domain LOS88_03485 PF01810 LysE type translocator LOS88_03490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_03490 PF00672 HAMP domain LOS88_03495 PF01330 RuvA N terminal domain LOS88_03495 PF07499 RuvA, C-terminal domain LOS88_03500 PF17864 RuvB AAA lid domain LOS88_03500 PF05491 RuvB C-terminal winged helix domain LOS88_03500 PF05496 Holliday junction DNA helicase RuvB P-loop domain LOS88_03505 PF01654 Cytochrome bd terminal oxidase subunit I LOS88_03510 PF02322 Cytochrome bd terminal oxidase subunit II LOS88_03515 PF08173 Membrane bound YbgT-like protein LOS88_03520 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) LOS88_03525 PF03061 Thioesterase superfamily LOS88_03530 PF01618 MotA/TolQ/ExbB proton channel family LOS88_03535 PF02472 Biopolymer transport protein ExbD/TolR LOS88_03545 PF04052 TolB amino-terminal domain LOS88_03545 PF07676 WD40-like Beta Propeller Repeat LOS88_03550 PF00691 OmpA family LOS88_03555 PF13174 Tetratricopeptide repeat LOS88_03555 PF16331 TolA binding protein trimerisation LOS88_03620 PF00209 Sodium:neurotransmitter symporter family LOS88_03630 PF00209 Sodium:neurotransmitter symporter family LOS88_03650 PF07690 Major Facilitator Superfamily LOS88_03660 PF01037 Lrp/AsnC ligand binding domain LOS88_03675 PF00293 NUDIX domain LOS88_03685 PF01641 SelR domain LOS88_03690 PF00128 Alpha amylase, catalytic domain LOS88_03690 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LOS88_03695 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LOS88_03695 PF00128 Alpha amylase, catalytic domain LOS88_03695 PF02806 Alpha amylase, C-terminal all-beta domain LOS88_03700 PF02446 4-alpha-glucanotransferase LOS88_03705 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LOS88_03705 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LOS88_03710 PF01263 Aldose 1-epimerase LOS88_03715 PF02445 Quinolinate synthetase A protein LOS88_03720 PF00672 HAMP domain LOS88_03720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_03725 PF01957 NfeD-like C-terminal, partner-binding LOS88_03730 PF01145 SPFH domain / Band 7 family LOS88_03730 PF16200 C-terminal region of band_7 LOS88_03735 PF14824 Sirohaem biosynthesis protein central LOS88_03735 PF10414 Sirohaem synthase dimerisation region LOS88_03735 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LOS88_03740 PF01507 Phosphoadenosine phosphosulfate reductase family LOS88_03745 PF00009 Elongation factor Tu GTP binding domain LOS88_03750 PF02080 TrkA-C domain LOS88_03750 PF03600 Citrate transporter LOS88_03785 PF08447 PAS fold LOS88_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_03805 PF00005 ABC transporter LOS88_03820 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) LOS88_03835 PF00719 Inorganic pyrophosphatase LOS88_03840 PF11849 Domain of unknown function (DUF3369) LOS88_03850 PF00893 Small Multidrug Resistance protein LOS88_03855 PF00893 Small Multidrug Resistance protein LOS88_03860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LOS88_03865 PF00912 Transglycosylase LOS88_03865 PF00905 Penicillin binding protein transpeptidase domain LOS88_03865 PF14814 Bifunctional transglycosylase second domain LOS88_03870 PF00271 Helicase conserved C-terminal domain LOS88_03870 PF04408 Helicase associated domain (HA2) LOS88_03870 PF08482 ATP-dependent helicase C-terminal LOS88_03870 PF00270 DEAD/DEAH box helicase LOS88_03880 PF03749 Sugar fermentation stimulation protein RE domain LOS88_03880 PF17746 SfsA N-terminal OB domain LOS88_03885 PF01258 Prokaryotic dksA/traR C4-type zinc finger LOS88_03890 PF00749 tRNA synthetases class I (E and Q), catalytic domain LOS88_03895 PF12627 Probable RNA and SrmB- binding site of polymerase A LOS88_03895 PF12626 Polymerase A arginine-rich C-terminus LOS88_03895 PF01743 Poly A polymerase head domain LOS88_03900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LOS88_03905 PF02548 Ketopantoate hydroxymethyltransferase LOS88_03910 PF02569 Pantoate-beta-alanine ligase LOS88_03920 PF00375 Sodium:dicarboxylate symporter family LOS88_03945 PF01061 ABC-2 type transporter LOS88_03950 PF00005 ABC transporter LOS88_03955 PF00156 Phosphoribosyl transferase domain LOS88_03960 PF00440 Bacterial regulatory proteins, tetR family LOS88_03965 PF02441 Flavoprotein LOS88_03970 PF01225 Mur ligase family, catalytic domain LOS88_03970 PF02875 Mur ligase family, glutamate ligase domain LOS88_03970 PF08245 Mur ligase middle domain LOS88_03975 PF01569 PAP2 superfamily LOS88_03980 PF01370 NAD dependent epimerase/dehydratase family LOS88_03985 PF00042 Globin LOS88_03985 PF00970 Oxidoreductase FAD-binding domain LOS88_03985 PF00175 Oxidoreductase NAD-binding domain LOS88_03990 PF03063 Prismane/CO dehydrogenase family LOS88_03995 PF00210 Ferritin-like domain LOS88_04000 PF01510 N-acetylmuramoyl-L-alanine amidase LOS88_04005 PF07308 Protein of unknown function (DUF1456) LOS88_04010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LOS88_04010 PF01627 Hpt domain LOS88_04010 PF00672 HAMP domain LOS88_04010 PF00072 Response regulator receiver domain LOS88_04010 PF00512 His Kinase A (phospho-acceptor) domain LOS88_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_04015 PF05958 tRNA (Uracil-5-)-methyltransferase LOS88_04015 PF01938 TRAM domain LOS88_04020 PF02824 TGS domain LOS88_04020 PF13291 ACT domain LOS88_04020 PF04607 Region found in RelA / SpoT proteins LOS88_04025 PF03819 MazG nucleotide pyrophosphohydrolase domain LOS88_04030 PF06418 CTP synthase N-terminus LOS88_04030 PF00117 Glutamine amidotransferase class-I LOS88_04035 PF00113 Enolase, C-terminal TIM barrel domain LOS88_04035 PF03952 Enolase, N-terminal domain LOS88_04040 PF00561 alpha/beta hydrolase fold LOS88_04080 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ LOS88_04090 PF12848 ABC transporter LOS88_04090 PF00005 ABC transporter LOS88_04095 PF00571 CBS domain LOS88_04095 PF02272 DHHA1 domain LOS88_04095 PF01368 DHH family LOS88_04095 PF01743 Poly A polymerase head domain LOS88_04110 PF00155 Aminotransferase class I and II LOS88_04110 PF00392 Bacterial regulatory proteins, gntR family LOS88_04120 PF01810 LysE type translocator LOS88_04125 PF01177 Asp/Glu/Hydantoin racemase LOS88_04135 PF04074 YhcH/YjgK/YiaL LOS88_04140 PF00871 Acetokinase family LOS88_04145 PF00924 Mechanosensitive ion channel LOS88_04150 PF17969 L,D-transpeptidase C-terminal domain LOS88_04150 PF03734 L,D-transpeptidase catalytic domain LOS88_04160 PF00474 Sodium:solute symporter family LOS88_04165 PF04977 Septum formation initiator LOS88_04170 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LOS88_04175 PF02542 YgbB family LOS88_04180 PF01142 tRNA pseudouridine synthase D (TruD) LOS88_04185 PF01975 Survival protein SurE LOS88_04195 PF09335 SNARE associated Golgi protein LOS88_04200 PF01476 LysM domain LOS88_04200 PF01551 Peptidase family M23 LOS88_04205 PF04545 Sigma-70, region 4 LOS88_04205 PF04539 Sigma-70 region 3 LOS88_04205 PF04542 Sigma-70 region 2 LOS88_04205 PF00140 Sigma-70 factor, region 1.2 LOS88_04210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LOS88_04220 PF04480 Protein of unknown function (DUF559) LOS88_04230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_04230 PF03466 LysR substrate binding domain LOS88_04235 PF04371 Porphyromonas-type peptidyl-arginine deiminase LOS88_04240 PF01425 Amidase LOS88_04260 PF01609 Transposase DDE domain LOS88_04260 PF13808 DDE_Tnp_1-associated LOS88_04275 PF00753 Metallo-beta-lactamase superfamily LOS88_04285 PF00270 DEAD/DEAH box helicase LOS88_04285 PF00271 Helicase conserved C-terminal domain LOS88_04290 PF00990 Diguanylate cyclase, GGDEF domain LOS88_04300 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase LOS88_04310 PF03150 Di-haem cytochrome c peroxidase LOS88_04310 PF00034 Cytochrome c LOS88_04320 PF00445 Ribonuclease T2 family LOS88_04325 PF03060 Nitronate monooxygenase LOS88_04350 PF09297 NADH pyrophosphatase zinc ribbon domain LOS88_04350 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain LOS88_04350 PF00293 NUDIX domain LOS88_04365 PF00486 Transcriptional regulatory protein, C terminal LOS88_04365 PF00072 Response regulator receiver domain LOS88_04385 PF03710 Glutamate-ammonia ligase adenylyltransferase LOS88_04385 PF08335 GlnD PII-uridylyltransferase LOS88_04390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_04390 PF00672 HAMP domain LOS88_04395 PF00520 Ion transport protein LOS88_04395 PF00027 Cyclic nucleotide-binding domain LOS88_04400 PF08239 Bacterial SH3 domain LOS88_04405 PF01619 Proline dehydrogenase LOS88_04405 PF00171 Aldehyde dehydrogenase family LOS88_04405 PF18327 Proline utilization A proline dehydrogenase N-terminal domain LOS88_04405 PF14850 DNA-binding domain of Proline dehydrogenase LOS88_04410 PF00293 NUDIX domain LOS88_04410 PF09297 NADH pyrophosphatase zinc ribbon domain LOS88_04415 PF01208 Uroporphyrinogen decarboxylase (URO-D) LOS88_04420 PF00480 ROK family LOS88_04425 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LOS88_04425 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LOS88_04430 PF00162 Phosphoglycerate kinase LOS88_04435 PF01116 Fructose-bisphosphate aldolase class-II LOS88_04440 PF01266 FAD dependent oxidoreductase LOS88_04455 PF02683 Cytochrome C biogenesis protein transmembrane region LOS88_04455 PF11412 Disulphide bond corrector protein DsbC LOS88_04460 PF03091 CutA1 divalent ion tolerance protein LOS88_04475 PF03466 LysR substrate binding domain LOS88_04475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_04480 PF01571 Aminomethyltransferase folate-binding domain LOS88_04485 PF03937 Flavinator of succinate dehydrogenase LOS88_04495 PF00890 FAD binding domain LOS88_04495 PF02910 Fumarate reductase flavoprotein C-term LOS88_04500 PF04542 Sigma-70 region 2 LOS88_04500 PF08281 Sigma-70, region 4 LOS88_04505 PF03873 Anti sigma-E protein RseA, C-terminal domain LOS88_04505 PF03872 Anti sigma-E protein RseA, N-terminal domain LOS88_04510 PF17188 MucB/RseB C-terminal domain LOS88_04510 PF03888 MucB/RseB N-terminal domain LOS88_04520 PF06421 GTP-binding protein LepA C-terminus LOS88_04520 PF03144 Elongation factor Tu domain 2 LOS88_04520 PF00009 Elongation factor Tu GTP binding domain LOS88_04520 PF00679 Elongation factor G C-terminus LOS88_04525 PF10502 Signal peptidase, peptidase S26 LOS88_04530 PF14622 Ribonuclease-III-like LOS88_04530 PF00035 Double-stranded RNA binding motif LOS88_04535 PF01926 50S ribosome-binding GTPase LOS88_04535 PF07650 KH domain LOS88_04540 PF02565 Recombination protein O C terminal LOS88_04540 PF11967 Recombination protein O N terminal LOS88_04545 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ LOS88_04550 PF00459 Inositol monophosphatase family LOS88_04555 PF03795 YCII-related domain LOS88_04560 PF04279 Intracellular septation protein A LOS88_04565 PF00282 Pyridoxal-dependent decarboxylase conserved domain LOS88_04570 PF03006 Haemolysin-III related LOS88_04575 PF02080 TrkA-C domain LOS88_04575 PF06826 Predicted Permease Membrane Region LOS88_04590 PF00990 Diguanylate cyclase, GGDEF domain LOS88_04590 PF00563 EAL domain LOS88_04590 PF03707 Bacterial signalling protein N terminal repeat LOS88_04595 PF06877 Regulator of ribonuclease activity B LOS88_04615 PF00561 alpha/beta hydrolase fold LOS88_04620 PF00194 Eukaryotic-type carbonic anhydrase LOS88_04625 PF04227 Indigoidine synthase A like protein LOS88_04630 PF00294 pfkB family carbohydrate kinase LOS88_04645 PF00582 Universal stress protein family LOS88_04655 PF00267 Gram-negative porin LOS88_04660 PF08241 Methyltransferase domain LOS88_04665 PF13545 Crp-like helix-turn-helix domain LOS88_04665 PF00027 Cyclic nucleotide-binding domain LOS88_04675 PF02566 OsmC-like protein LOS88_04690 PF00485 Phosphoribulokinase / Uridine kinase family LOS88_04695 PF06794 Uncharacterised protein family (UPF0270) LOS88_04700 PF00563 EAL domain LOS88_04700 PF01590 GAF domain LOS88_04700 PF00360 Phytochrome region LOS88_04700 PF00990 Diguanylate cyclase, GGDEF domain LOS88_04705 PF00561 alpha/beta hydrolase fold LOS88_04710 PF01584 CheW-like domain LOS88_04710 PF00072 Response regulator receiver domain LOS88_04720 PF09526 Probable metal-binding protein (DUF2387) LOS88_04725 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_04735 PF03796 DnaB-like helicase C terminal domain LOS88_04735 PF00772 DnaB-like helicase N terminal domain LOS88_04740 PF00842 Alanine racemase, C-terminal domain LOS88_04740 PF01168 Alanine racemase, N-terminal domain LOS88_04745 PF01894 Uncharacterised protein family UPF0047 LOS88_04750 PF03575 Peptidase family S51 LOS88_04755 PF02554 Carbon starvation protein CstA LOS88_04755 PF13722 5TM C-terminal transporter carbon starvation CstA LOS88_04760 PF04397 LytTr DNA-binding domain LOS88_04760 PF00072 Response regulator receiver domain LOS88_04765 PF06580 Histidine kinase LOS88_04765 PF07694 5TMR of 5TMR-LYT LOS88_04775 PF00005 ABC transporter LOS88_04780 PF01032 FecCD transport family LOS88_04790 PF06228 Haem utilisation ChuX/HutX LOS88_04795 PF01243 Pyridoxamine 5'-phosphate oxidase LOS88_04825 PF07715 TonB-dependent Receptor Plug Domain LOS88_04825 PF00593 TonB dependent receptor LOS88_04830 PF12832 MFS_1 like family LOS88_04840 PF13443 Cro/C1-type HTH DNA-binding domain LOS88_04850 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LOS88_04850 PF00072 Response regulator receiver domain LOS88_04850 PF00512 His Kinase A (phospho-acceptor) domain LOS88_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_04850 PF00672 HAMP domain LOS88_04850 PF01627 Hpt domain LOS88_04855 PF08329 Chitinase A, N-terminal domain LOS88_04855 PF00704 Glycosyl hydrolases family 18 LOS88_04860 PF00990 Diguanylate cyclase, GGDEF domain LOS88_04860 PF08448 PAS fold LOS88_04865 PF00704 Glycosyl hydrolases family 18 LOS88_04865 PF08329 Chitinase A, N-terminal domain LOS88_04870 PF12561 ToxR activated gene A lipoprotein domain LOS88_04870 PF17945 Beta/Gamma crystallin LOS88_04875 PF18416 N-acetylglucosamine binding protein domain 2 LOS88_04875 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LOS88_04915 PF00072 Response regulator receiver domain LOS88_04915 PF01584 CheW-like domain LOS88_04920 PF13472 GDSL-like Lipase/Acylhydrolase family LOS88_04925 PF00005 ABC transporter LOS88_04935 PF08338 Domain of unknown function (DUF1731) LOS88_04935 PF01370 NAD dependent epimerase/dehydratase family LOS88_04940 PF12792 CSS motif domain associated with EAL LOS88_04940 PF00563 EAL domain LOS88_04945 PF00155 Aminotransferase class I and II LOS88_04950 PF02390 Putative methyltransferase LOS88_04955 PF04320 Protein with unknown function (DUF469) LOS88_04960 PF04960 Glutaminase LOS88_04965 PF00581 Rhodanese-like domain LOS88_04970 PF06004 Bacterial protein of unknown function (DUF903) LOS88_05005 PF00589 Phage integrase family LOS88_05005 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_05015 PF07804 HipA-like C-terminal domain LOS88_05015 PF13657 HipA N-terminal domain LOS88_05030 PF05638 Type VI secretion system effector, Hcp LOS88_05040 PF04717 Type VI secretion system, phage-baseplate injector LOS88_05100 PF02463 RecF/RecN/SMC N terminal domain LOS88_05105 PF01695 IstB-like ATP binding protein LOS88_05110 PF00665 Integrase core domain LOS88_05145 PF01526 Tn3 transposase DDE domain LOS88_05145 PF13700 Domain of unknown function (DUF4158) LOS88_05150 PF02796 Helix-turn-helix domain of resolvase LOS88_05150 PF00239 Resolvase, N terminal domain LOS88_05155 PF11809 Domain of unknown function (DUF3330) LOS88_05155 PF00563 EAL domain LOS88_05165 PF05052 MerE protein LOS88_05170 PF13411 MerR HTH family regulatory protein LOS88_05175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_05175 PF00403 Heavy-metal-associated domain LOS88_05175 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_05180 PF00403 Heavy-metal-associated domain LOS88_05185 PF02411 MerT mercuric transport protein LOS88_05190 PF00376 MerR family regulatory protein LOS88_05190 PF09278 MerR, DNA binding LOS88_05195 PF02371 Transposase IS116/IS110/IS902 family LOS88_05195 PF01548 Transposase LOS88_05200 PF12848 ABC transporter LOS88_05200 PF00005 ABC transporter LOS88_05205 PF01636 Phosphotransferase enzyme family LOS88_05210 PF00239 Resolvase, N terminal domain LOS88_05210 PF02796 Helix-turn-helix domain of resolvase LOS88_05220 PF01966 HD domain LOS88_05220 PF11871 Domain of unknown function (DUF3391) LOS88_05255 PF00239 Resolvase, N terminal domain LOS88_05255 PF02796 Helix-turn-helix domain of resolvase LOS88_05300 PF07690 Major Facilitator Superfamily LOS88_05305 PF02909 Tetracyclin repressor-like, C-terminal domain LOS88_05305 PF00440 Bacterial regulatory proteins, tetR family LOS88_05320 PF00144 Beta-lactamase LOS88_05335 PF00144 Beta-lactamase LOS88_05345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_05345 PF00672 HAMP domain LOS88_05345 PF12729 Four helix bundle sensory module for signal transduction LOS88_05355 PF00893 Small Multidrug Resistance protein LOS88_05360 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_05365 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system LOS88_05370 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system LOS88_05385 PF00589 Phage integrase family LOS88_05385 PF13495 Phage integrase, N-terminal SAM-like domain LOS88_05390 PF02796 Helix-turn-helix domain of resolvase LOS88_05390 PF00239 Resolvase, N terminal domain LOS88_05395 PF01526 Tn3 transposase DDE domain LOS88_05395 PF13700 Domain of unknown function (DUF4158) LOS88_05415 PF13610 DDE domain LOS88_05435 PF01636 Phosphotransferase enzyme family LOS88_05440 PF13610 DDE domain LOS88_05500 PF04381 Putative exonuclease, RdgC LOS88_05550 PF00565 Staphylococcal nuclease homologue LOS88_05555 PF00216 Bacterial DNA-binding protein LOS88_05575 PF13614 AAA domain LOS88_05580 PF02195 ParB-like nuclease domain LOS88_05580 PF06613 KorB C-terminal beta-barrel domain LOS88_05580 PF08535 KorB domain LOS88_05620 PF10544 T5orf172 domain LOS88_05640 PF01131 DNA topoisomerase LOS88_05640 PF01751 Toprim domain LOS88_05715 PF03958 Bacterial type II/III secretion system short domain LOS88_05715 PF00263 Bacterial type II and III secretion system protein LOS88_05740 PF10411 Disulfide bond isomerase protein N-terminus LOS88_05740 PF13098 Thioredoxin-like domain LOS88_05760 PF12477 Sex factor F TraW protein N terminal LOS88_05800 PF00994 Probable molybdopterin binding domain LOS88_05810 PF06738 Putative threonine/serine exporter LOS88_05815 PF12821 Threonine/Serine exporter, ThrE LOS88_05820 PF00186 Dihydrofolate reductase LOS88_05825 PF01507 Phosphoadenosine phosphosulfate reductase family LOS88_05830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LOS88_05830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LOS88_05835 PF00667 FAD binding domain LOS88_05835 PF00258 Flavodoxin LOS88_05835 PF00175 Oxidoreductase NAD-binding domain LOS88_05840 PF02567 Phenazine biosynthesis-like protein LOS88_05845 PF00152 tRNA synthetases class II (D, K and N) LOS88_05845 PF01336 OB-fold nucleic acid binding domain LOS88_05855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_05855 PF02743 Cache domain LOS88_05855 PF00672 HAMP domain LOS88_05860 PF03616 Sodium/glutamate symporter LOS88_05865 PF00710 Asparaginase, N-terminal LOS88_05865 PF17763 Glutaminase/Asparaginase C-terminal domain LOS88_05870 PF07023 Protein of unknown function (DUF1315) LOS88_05875 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LOS88_05875 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LOS88_05890 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LOS88_05890 PF04055 Radical SAM superfamily LOS88_05895 PF03099 Biotin/lipoate A/B protein ligase family LOS88_05900 PF04359 Protein of unknown function (DUF493) LOS88_05905 PF00768 D-alanyl-D-alanine carboxypeptidase LOS88_05905 PF07943 Penicillin-binding protein 5, C-terminal domain LOS88_05910 PF05036 Sporulation related domain LOS88_05910 PF03330 Lytic transglycolase LOS88_05915 PF13406 Transglycosylase SLT domain LOS88_05920 PF01098 Cell cycle protein LOS88_05925 PF03717 Penicillin-binding Protein dimerisation domain LOS88_05925 PF00905 Penicillin binding protein transpeptidase domain LOS88_05930 PF02590 Predicted SPOUT methyltransferase LOS88_05940 PF01467 Cytidylyltransferase-like LOS88_05955 PF00133 tRNA synthetases class I (I, L, M and V) LOS88_05955 PF08264 Anticodon-binding domain of tRNA LOS88_05955 PF13603 Leucyl-tRNA synthetase, Domain 2 LOS88_05960 PF07295 Zinc-ribbon containing domain LOS88_05965 PF01523 Putative modulator of DNA gyrase LOS88_05970 PF01523 Putative modulator of DNA gyrase LOS88_05975 PF00258 Flavodoxin LOS88_05980 PF00589 Phage integrase family LOS88_05980 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_05985 PF01741 Large-conductance mechanosensitive channel, MscL LOS88_05995 PF01368 DHH family LOS88_05995 PF02272 DHHA1 domain LOS88_05995 PF17768 RecJ OB domain LOS88_06000 PF13411 MerR HTH family regulatory protein LOS88_06005 PF00795 Carbon-nitrogen hydrolase LOS88_06010 PF00571 CBS domain LOS88_06010 PF03471 Transporter associated domain LOS88_06015 PF02130 Uncharacterized protein family UPF0054 LOS88_06020 PF02562 PhoH-like protein LOS88_06025 PF04055 Radical SAM superfamily LOS88_06025 PF01938 TRAM domain LOS88_06025 PF00919 Uncharacterized protein family UPF0004 LOS88_06030 PF01494 FAD binding domain LOS88_06035 PF00857 Isochorismatase family LOS88_06040 PF00313 'Cold-shock' DNA-binding domain LOS88_06045 PF05230 MASE2 domain LOS88_06045 PF00990 Diguanylate cyclase, GGDEF domain LOS88_06050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_06050 PF03466 LysR substrate binding domain LOS88_06060 PF13419 Haloacid dehalogenase-like hydrolase LOS88_06080 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LOS88_06080 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LOS88_06090 PF09285 Elongation factor P, C-terminal LOS88_06090 PF01132 Elongation factor P (EF-P) OB domain LOS88_06090 PF08207 Elongation factor P (EF-P) KOW-like domain LOS88_06100 PF00478 IMP dehydrogenase / GMP reductase domain LOS88_06120 PF08521 Two-component sensor kinase N-terminal LOS88_06120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_06120 PF00512 His Kinase A (phospho-acceptor) domain LOS88_06125 PF00486 Transcriptional regulatory protein, C terminal LOS88_06125 PF00072 Response regulator receiver domain LOS88_06135 PF00106 short chain dehydrogenase LOS88_06145 PF00501 AMP-binding enzyme LOS88_06160 PF01266 FAD dependent oxidoreductase LOS88_06170 PF00440 Bacterial regulatory proteins, tetR family LOS88_06170 PF17932 Tetracyclin repressor-like, C-terminal domain LOS88_06175 PF06224 Winged helix DNA-binding domain LOS88_06185 PF07687 Peptidase dimerisation domain LOS88_06185 PF01546 Peptidase family M20/M25/M40 LOS88_06190 PF07670 Nucleoside recognition LOS88_06195 PF07670 Nucleoside recognition LOS88_06200 PF02313 Fumarate reductase subunit D LOS88_06205 PF02300 Fumarate reductase subunit C LOS88_06210 PF13183 4Fe-4S dicluster domain LOS88_06210 PF13085 2Fe-2S iron-sulfur cluster binding domain LOS88_06215 PF02910 Fumarate reductase flavoprotein C-term LOS88_06215 PF00890 FAD binding domain LOS88_06220 PF00672 HAMP domain LOS88_06220 PF02743 Cache domain LOS88_06220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_06225 PF03009 Glycerophosphoryl diester phosphodiesterase family LOS88_06230 PF00924 Mechanosensitive ion channel LOS88_06230 PF12795 Mechanosensitive ion channel porin domain LOS88_06230 PF12794 Mechanosensitive ion channel inner membrane domain 1 LOS88_06240 PF01551 Peptidase family M23 LOS88_06240 PF08525 Opacity-associated protein A N-terminal motif LOS88_06240 PF01476 LysM domain LOS88_06250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_06250 PF03466 LysR substrate binding domain LOS88_06265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_06265 PF00672 HAMP domain LOS88_06270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_06270 PF03466 LysR substrate binding domain LOS88_06275 PF17092 Penicillin-binding protein OB-like domain LOS88_06275 PF00912 Transglycosylase LOS88_06275 PF00905 Penicillin binding protein transpeptidase domain LOS88_06280 PF11104 Type IV pilus assembly protein PilM; LOS88_06300 PF07660 Secretin and TonB N terminus short domain LOS88_06300 PF11741 AMIN domain LOS88_06300 PF03958 Bacterial type II/III secretion system short domain LOS88_06300 PF00263 Bacterial type II and III secretion system protein LOS88_06305 PF01202 Shikimate kinase LOS88_06310 PF01761 3-dehydroquinate synthase LOS88_06320 PF02086 D12 class N6 adenine-specific DNA methyltransferase LOS88_06325 PF00834 Ribulose-phosphate 3 epimerase family LOS88_06330 PF13419 Haloacid dehalogenase-like hydrolase LOS88_06335 PF00579 tRNA synthetases class I (W and Y) LOS88_06345 PF00117 Glutamine amidotransferase class-I LOS88_06350 PF00202 Aminotransferase class-III LOS88_06355 PF04958 Arginine N-succinyltransferase beta subunit LOS88_06360 PF00171 Aldehyde dehydrogenase family LOS88_06375 PF13419 Haloacid dehalogenase-like hydrolase LOS88_06380 PF07690 Major Facilitator Superfamily LOS88_06385 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LOS88_06385 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_06385 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LOS88_06385 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LOS88_06385 PF10371 Domain of unknown function LOS88_06390 PF00128 Alpha amylase, catalytic domain LOS88_06390 PF16657 Maltogenic Amylase, C-terminal domain LOS88_06400 PF04266 ASCH domain LOS88_06410 PF01048 Phosphorylase superfamily LOS88_06415 PF04973 Nicotinamide mononucleotide transporter LOS88_06420 PF03600 Citrate transporter LOS88_06420 PF02080 TrkA-C domain LOS88_06465 PF01926 50S ribosome-binding GTPase LOS88_06465 PF06071 Protein of unknown function (DUF933) LOS88_06470 PF01195 Peptidyl-tRNA hydrolase LOS88_06475 PF00149 Calcineurin-like phosphoesterase LOS88_06475 PF02872 5'-nucleotidase, C-terminal domain LOS88_06480 PF14572 Phosphoribosyl synthetase-associated domain LOS88_06480 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LOS88_06490 PF00288 GHMP kinases N terminal domain LOS88_06490 PF08544 GHMP kinases C terminal LOS88_06495 PF03550 Outer membrane lipoprotein LolB LOS88_06500 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LOS88_06500 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LOS88_06500 PF01488 Shikimate / quinate 5-dehydrogenase LOS88_06505 PF03462 PCRF domain LOS88_06505 PF00472 RF-1 domain LOS88_06510 PF17827 PrmC N-terminal domain LOS88_06510 PF13847 Methyltransferase domain LOS88_06520 PF13369 Transglutaminase-like superfamily LOS88_06525 PF00793 DAHP synthetase I family LOS88_06530 PF00375 Sodium:dicarboxylate symporter family LOS88_06535 PF01228 Glycine radical LOS88_06545 PF03167 Uracil DNA glycosylase superfamily LOS88_06560 PF01161 Phosphatidylethanolamine-binding protein LOS88_06565 PF00709 Adenylosuccinate synthetase LOS88_06580 PF00155 Aminotransferase class I and II LOS88_06585 PF07690 Major Facilitator Superfamily LOS88_06590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_06590 PF03466 LysR substrate binding domain LOS88_06595 PF00106 short chain dehydrogenase LOS88_06600 PF01343 Peptidase family S49 LOS88_06600 PF08496 Peptidase family S49 N-terminal LOS88_06605 PF07690 Major Facilitator Superfamily LOS88_06610 PF00990 Diguanylate cyclase, GGDEF domain LOS88_06615 PF02635 DsrE/DsrF-like family LOS88_06625 PF12838 4Fe-4S dicluster domain LOS88_06630 PF01136 Peptidase family U32 LOS88_06630 PF16325 Peptidase family U32 C-terminal domain LOS88_06640 PF01339 CheB methylesterase LOS88_06640 PF00072 Response regulator receiver domain LOS88_06655 PF01339 CheB methylesterase LOS88_06655 PF01739 CheR methyltransferase, SAM binding domain LOS88_06655 PF03705 CheR methyltransferase, all-alpha domain LOS88_06655 PF08448 PAS fold LOS88_06660 PF00563 EAL domain LOS88_06660 PF03707 Bacterial signalling protein N terminal repeat LOS88_06660 PF00990 Diguanylate cyclase, GGDEF domain LOS88_06690 PF00563 EAL domain LOS88_06690 PF00990 Diguanylate cyclase, GGDEF domain LOS88_06690 PF00989 PAS fold LOS88_06690 PF01590 GAF domain LOS88_06720 PF01695 IstB-like ATP binding protein LOS88_06765 PF00817 impB/mucB/samB family LOS88_06765 PF11799 impB/mucB/samB family C-terminal domain LOS88_06765 PF11798 IMS family HHH motif LOS88_06765 PF13438 Domain of unknown function (DUF4113) LOS88_06775 PF13438 Domain of unknown function (DUF4113) LOS88_06775 PF00817 impB/mucB/samB family LOS88_06775 PF11799 impB/mucB/samB family C-terminal domain LOS88_06795 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LOS88_06795 PF01568 Molydopterin dinucleotide binding domain LOS88_06795 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LOS88_06795 PF12838 4Fe-4S dicluster domain LOS88_06795 PF00384 Molybdopterin oxidoreductase LOS88_06800 PF03707 Bacterial signalling protein N terminal repeat LOS88_06800 PF00990 Diguanylate cyclase, GGDEF domain LOS88_06800 PF00563 EAL domain LOS88_06805 PF00512 His Kinase A (phospho-acceptor) domain LOS88_06805 PF09456 RcsC Alpha-Beta-Loop (ABL) LOS88_06805 PF00072 Response regulator receiver domain LOS88_06805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_06820 PF11799 impB/mucB/samB family C-terminal domain LOS88_06820 PF11798 IMS family HHH motif LOS88_06820 PF13438 Domain of unknown function (DUF4113) LOS88_06820 PF00817 impB/mucB/samB family LOS88_06825 PF00717 Peptidase S24-like LOS88_06840 PF12161 HsdM N-terminal domain LOS88_06840 PF02384 N-6 DNA Methylase LOS88_06855 PF00270 DEAD/DEAH box helicase LOS88_06855 PF13749 Putative ATP-dependent DNA helicase recG C-terminal LOS88_06855 PF17191 RecG wedge domain LOS88_06860 PF11867 Domain of unknown function (DUF3387) LOS88_06860 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) LOS88_06860 PF18766 SWI2/SNF2 ATPase LOS88_06870 PF14338 Mrr N-terminal domain LOS88_06870 PF04471 Restriction endonuclease LOS88_06875 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A LOS88_06925 PF04002 RadC-like JAB domain LOS88_06970 PF09588 YqaJ-like viral recombinase domain LOS88_06980 PF13358 DDE superfamily endonuclease LOS88_06980 PF13592 Winged helix-turn helix LOS88_06985 PF05930 Prophage CP4-57 regulatory protein (AlpA) LOS88_07005 PF13356 Arm DNA-binding domain LOS88_07005 PF00589 Phage integrase family LOS88_07015 PF01668 SmpB protein LOS88_07020 PF03364 Polyketide cyclase / dehydrase and lipid transport LOS88_07025 PF03658 RnfH family Ubiquitin LOS88_07030 PF07687 Peptidase dimerisation domain LOS88_07030 PF01546 Peptidase family M20/M25/M40 LOS88_07035 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LOS88_07035 PF02770 Acyl-CoA dehydrogenase, middle domain LOS88_07035 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LOS88_07035 PF09317 Domain of unknown function (DUF1974) LOS88_07040 PF13580 SIS domain LOS88_07045 PF13230 Glutamine amidotransferases class-II LOS88_07060 PF13737 Transposase DDE domain LOS88_07075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_07075 PF00512 His Kinase A (phospho-acceptor) domain LOS88_07075 PF09456 RcsC Alpha-Beta-Loop (ABL) LOS88_07075 PF00072 Response regulator receiver domain LOS88_07085 PF00196 Bacterial regulatory proteins, luxR family LOS88_07085 PF00072 Response regulator receiver domain LOS88_07090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_07090 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term LOS88_07090 PF07730 Histidine kinase LOS88_07090 PF00672 HAMP domain LOS88_07095 PF06463 Molybdenum Cofactor Synthesis C LOS88_07095 PF04055 Radical SAM superfamily LOS88_07100 PF12838 4Fe-4S dicluster domain LOS88_07100 PF13187 4Fe-4S dicluster domain LOS88_07110 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LOS88_07110 PF00384 Molybdopterin oxidoreductase LOS88_07110 PF01568 Molydopterin dinucleotide binding domain LOS88_07110 PF10518 TAT (twin-arginine translocation) pathway signal sequence LOS88_07115 PF12838 4Fe-4S dicluster domain LOS88_07115 PF12800 4Fe-4S binding domain LOS88_07120 PF12801 4Fe-4S binding domain LOS88_07120 PF12837 4Fe-4S binding domain LOS88_07125 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) LOS88_07130 PF03264 NapC/NirT cytochrome c family, N-terminal region LOS88_07135 PF00994 Probable molybdopterin binding domain LOS88_07140 PF01967 MoaC family LOS88_07145 PF02597 ThiS family LOS88_07150 PF02391 MoaE protein LOS88_07160 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_07165 PF00005 ABC transporter LOS88_07165 PF03459 TOBE domain LOS88_07170 PF00561 alpha/beta hydrolase fold LOS88_07175 PF00899 ThiF family LOS88_07180 PF00994 Probable molybdopterin binding domain LOS88_07180 PF03454 MoeA C-terminal region (domain IV) LOS88_07180 PF03453 MoeA N-terminal region (domain I and II) LOS88_07185 PF01227 GTP cyclohydrolase I LOS88_07190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_07190 PF17200 Single Cache domain 2 LOS88_07190 PF00672 HAMP domain LOS88_07195 PF01268 Formate--tetrahydrofolate ligase LOS88_07205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_07205 PF03466 LysR substrate binding domain LOS88_07210 PF04264 YceI-like domain LOS88_07220 PF05221 S-adenosyl-L-homocysteine hydrolase LOS88_07220 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain LOS88_07235 PF07687 Peptidase dimerisation domain LOS88_07235 PF01546 Peptidase family M20/M25/M40 LOS88_07240 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LOS88_07240 PF17810 Arginine decarboxylase helical bundle domain LOS88_07240 PF17944 Arginine decarboxylase C-terminal helical extension LOS88_07250 PF14864 Alkyl sulfatase C-terminal LOS88_07250 PF14863 Alkyl sulfatase dimerisation LOS88_07250 PF00753 Metallo-beta-lactamase superfamily LOS88_07265 PF00672 HAMP domain LOS88_07265 PF12729 Four helix bundle sensory module for signal transduction LOS88_07265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_07275 PF01042 Endoribonuclease L-PSP LOS88_07280 PF03313 Serine dehydratase alpha chain LOS88_07285 PF13309 HTH domain LOS88_07285 PF08348 YheO-like PAS domain LOS88_07290 PF00300 Histidine phosphatase superfamily (branch 1) LOS88_07295 PF00672 HAMP domain LOS88_07295 PF12729 Four helix bundle sensory module for signal transduction LOS88_07295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_07300 PF07055 Enoyl reductase FAD binding domain LOS88_07300 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase LOS88_07300 PF12241 Trans-2-enoyl-CoA reductase catalytic region LOS88_07305 PF03606 C4-dicarboxylate anaerobic carrier LOS88_07310 PF00155 Aminotransferase class I and II LOS88_07320 PF00230 Major intrinsic protein LOS88_07325 PF01551 Peptidase family M23 LOS88_07325 PF01464 Transglycosylase SLT domain LOS88_07325 PF10145 Phage-related minor tail protein LOS88_07340 PF13396 Phospholipase_D-nuclease N-terminal LOS88_07340 PF13091 PLD-like domain LOS88_07350 PF01842 ACT domain LOS88_07350 PF00551 Formyl transferase LOS88_07355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LOS88_07365 PF00085 Thioredoxin LOS88_07370 PF01648 4'-phosphopantetheinyl transferase superfamily LOS88_07375 PF00877 NlpC/P60 family LOS88_07380 PF05971 RNA methyltransferase LOS88_07385 PF01575 MaoC like domain LOS88_07390 PF00939 Sodium:sulfate symporter transmembrane region LOS88_07410 PF01380 SIS domain LOS88_07410 PF01418 Helix-turn-helix domain, rpiR family LOS88_07415 PF02378 Phosphotransferase system, EIIC LOS88_07415 PF00367 phosphotransferase system, EIIB LOS88_07415 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LOS88_07420 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LOS88_07425 PF03695 Uncharacterised protein family (UPF0149) LOS88_07425 PF02810 SEC-C motif LOS88_07430 PF04829 Pre-toxin domain with VENN motif LOS88_07430 PF05860 haemagglutination activity domain LOS88_07430 PF13332 Hemagglutinin repeat LOS88_07445 PF13737 Transposase DDE domain LOS88_07450 PF13808 DDE_Tnp_1-associated LOS88_07450 PF01609 Transposase DDE domain LOS88_07455 PF00873 AcrB/AcrD/AcrF family LOS88_07460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_07460 PF00529 HlyD membrane-fusion protein of T1SS LOS88_07465 PF00072 Response regulator receiver domain LOS88_07465 PF00486 Transcriptional regulatory protein, C terminal LOS88_07470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_07470 PF00512 His Kinase A (phospho-acceptor) domain LOS88_07470 PF00672 HAMP domain LOS88_07475 PF04434 SWIM zinc finger LOS88_07475 PF00271 Helicase conserved C-terminal domain LOS88_07475 PF00176 SNF2 family N-terminal domain LOS88_07480 PF05472 DNA replication terminus site-binding protein (Ter protein) LOS88_07490 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family LOS88_07495 PF01464 Transglycosylase SLT domain LOS88_07495 PF01476 LysM domain LOS88_07500 PF00753 Metallo-beta-lactamase superfamily LOS88_07500 PF16123 Hydroxyacylglutathione hydrolase C-terminus LOS88_07505 PF08241 Methyltransferase domain LOS88_07510 PF00075 RNase H LOS88_07515 PF00929 Exonuclease LOS88_07525 PF11849 Domain of unknown function (DUF3369) LOS88_07535 PF08021 Siderophore-interacting FAD-binding domain LOS88_07535 PF04954 Siderophore-interacting protein LOS88_07540 PF01032 FecCD transport family LOS88_07545 PF01032 FecCD transport family LOS88_07550 PF00005 ABC transporter LOS88_07555 PF01497 Periplasmic binding protein LOS88_07565 PF00873 AcrB/AcrD/AcrF family LOS88_07570 PF00529 HlyD membrane-fusion protein of T1SS LOS88_07570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_07580 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LOS88_07595 PF00873 AcrB/AcrD/AcrF family LOS88_07600 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_07605 PF03372 Endonuclease/Exonuclease/phosphatase family LOS88_07615 PF00072 Response regulator receiver domain LOS88_07615 PF00486 Transcriptional regulatory protein, C terminal LOS88_07620 PF02424 ApbE family LOS88_07625 PF00127 Copper binding proteins, plastocyanin/azurin family LOS88_07635 PF04337 Protein of unknown function, DUF480 LOS88_07640 PF00563 EAL domain LOS88_07640 PF00990 Diguanylate cyclase, GGDEF domain LOS88_07640 PF03707 Bacterial signalling protein N terminal repeat LOS88_07640 PF13188 PAS domain LOS88_07650 PF04325 Protein of unknown function (DUF465) LOS88_07660 PF01554 MatE LOS88_07680 PF00465 Iron-containing alcohol dehydrogenase LOS88_07690 PF00440 Bacterial regulatory proteins, tetR family LOS88_07690 PF08359 YsiA-like protein, C-terminal region LOS88_07695 PF00171 Aldehyde dehydrogenase family LOS88_07705 PF01156 Inosine-uridine preferring nucleoside hydrolase LOS88_07715 PF00034 Cytochrome c LOS88_07715 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LOS88_07725 PF05656 Protein of unknown function (DUF805) LOS88_07745 PF17678 Glycosyl hydrolase family 92 N-terminal domain LOS88_07745 PF07971 Glycosyl hydrolase family 92 LOS88_07760 PF07971 Glycosyl hydrolase family 92 LOS88_07760 PF17678 Glycosyl hydrolase family 92 N-terminal domain LOS88_07765 PF01609 Transposase DDE domain LOS88_07765 PF13808 DDE_Tnp_1-associated LOS88_07775 PF01238 Phosphomannose isomerase type I LOS88_07780 PF12833 Helix-turn-helix domain LOS88_07785 PF00180 Isocitrate/isopropylmalate dehydrogenase LOS88_07795 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_07800 PF02447 GntP family permease LOS88_07805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_07805 PF03466 LysR substrate binding domain LOS88_07815 PF00877 NlpC/P60 family LOS88_07820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_07820 PF03466 LysR substrate binding domain LOS88_07825 PF00578 AhpC/TSA family LOS88_07825 PF10417 C-terminal domain of 1-Cys peroxiredoxin LOS88_07845 PF08003 Protein of unknown function (DUF1698) LOS88_07850 PF13649 Methyltransferase domain LOS88_07855 PF01904 Protein of unknown function DUF72 LOS88_07865 PF02938 GAD domain LOS88_07865 PF00152 tRNA synthetases class II (D, K and N) LOS88_07865 PF01336 OB-fold nucleic acid binding domain LOS88_07870 PF01709 Transcriptional regulator LOS88_07875 PF00171 Aldehyde dehydrogenase family LOS88_07875 PF00465 Iron-containing alcohol dehydrogenase LOS88_07880 PF01914 MarC family integral membrane protein LOS88_07885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_07890 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_07895 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_07895 PF12911 N-terminal TM domain of oligopeptide transport permease C LOS88_07900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_07900 PF00005 ABC transporter LOS88_07905 PF00005 ABC transporter LOS88_07905 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_07910 PF03741 Integral membrane protein TerC family LOS88_07915 PF01168 Alanine racemase, N-terminal domain LOS88_07915 PF00842 Alanine racemase, C-terminal domain LOS88_07925 PF00437 Type II/IV secretion system protein LOS88_07940 PF01032 FecCD transport family LOS88_07945 PF00005 ABC transporter LOS88_07950 PF00793 DAHP synthetase I family LOS88_07955 PF01219 Prokaryotic diacylglycerol kinase LOS88_07965 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LOS88_07965 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LOS88_07965 PF01842 ACT domain LOS88_07970 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) LOS88_07975 PF01812 5-formyltetrahydrofolate cyclo-ligase family LOS88_07990 PF05173 Dihydrodipicolinate reductase, C-terminus LOS88_07990 PF01113 Dihydrodipicolinate reductase, N-terminus LOS88_08000 PF00117 Glutamine amidotransferase class-I LOS88_08000 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LOS88_08005 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LOS88_08005 PF02142 MGS-like domain LOS88_08005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LOS88_08010 PF07759 Protein of unknown function (DUF1615) LOS88_08015 PF02153 Prephenate dehydrogenase LOS88_08015 PF01817 Chorismate mutase type II LOS88_08020 PF00793 DAHP synthetase I family LOS88_08025 PF00483 Nucleotidyl transferase LOS88_08030 PF07549 SecD/SecF GG Motif LOS88_08030 PF02355 Protein export membrane protein LOS88_08035 PF07549 SecD/SecF GG Motif LOS88_08035 PF13721 SecD export protein N-terminal TM region LOS88_08035 PF02355 Protein export membrane protein LOS88_08070 PF01230 HIT domain LOS88_08075 PF12729 Four helix bundle sensory module for signal transduction LOS88_08075 PF00672 HAMP domain LOS88_08075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_08085 PF01979 Amidohydrolase family LOS88_08100 PF00375 Sodium:dicarboxylate symporter family LOS88_08105 PF08447 PAS fold LOS88_08105 PF13426 PAS domain LOS88_08105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_08120 PF05661 Protein of unknown function (DUF808) LOS88_08125 PF08439 Oligopeptidase F LOS88_08125 PF01432 Peptidase family M3 LOS88_08130 PF00860 Permease family LOS88_08135 PF05728 Uncharacterised protein family (UPF0227) LOS88_08140 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_08150 PF04055 Radical SAM superfamily LOS88_08155 PF03707 Bacterial signalling protein N terminal repeat LOS88_08155 PF00990 Diguanylate cyclase, GGDEF domain LOS88_08155 PF00563 EAL domain LOS88_08160 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_08160 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_08170 PF07678 A-macroglobulin TED domain LOS88_08170 PF07703 Alpha-2-macroglobulin bait region domain LOS88_08170 PF17962 Bacterial macroglobulin domain 6 LOS88_08170 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain LOS88_08170 PF11974 Bacterial alpha-2-macroglobulin MG3 domain LOS88_08170 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain LOS88_08170 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain LOS88_08170 PF01835 MG2 domain LOS88_08170 PF00207 Alpha-2-macroglobulin family LOS88_08175 PF00912 Transglycosylase LOS88_08175 PF06832 Penicillin-Binding Protein C-terminus Family LOS88_08175 PF00905 Penicillin binding protein transpeptidase domain LOS88_08190 PF02926 THUMP domain LOS88_08190 PF02568 Thiamine biosynthesis protein (ThiI) LOS88_08200 PF03458 UPF0126 domain LOS88_08205 PF00700 Bacterial flagellin C-terminal helical region LOS88_08205 PF07196 Flagellin hook IN motif LOS88_08205 PF00669 Bacterial flagellin N-terminal helical region LOS88_08210 PF00669 Bacterial flagellin N-terminal helical region LOS88_08210 PF07196 Flagellin hook IN motif LOS88_08210 PF00700 Bacterial flagellin C-terminal helical region LOS88_08220 PF02465 Flagellar hook-associated protein 2 N-terminus LOS88_08220 PF07195 Flagellar hook-associated protein 2 C-terminus LOS88_08220 PF07196 Flagellin hook IN motif LOS88_08225 PF02561 Flagellar protein FliS LOS88_08245 PF08666 SAF domain LOS88_08245 PF03102 NeuB family LOS88_08255 PF00202 Aminotransferase class-III LOS88_08260 PF02348 Cytidylyltransferase LOS88_08270 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LOS88_08275 PF02719 Polysaccharide biosynthesis protein LOS88_08280 PF01497 Periplasmic binding protein LOS88_08290 PF01048 Phosphorylase superfamily LOS88_08295 PF02535 ZIP Zinc transporter LOS88_08300 PF00459 Inositol monophosphatase family LOS88_08310 PF00043 Glutathione S-transferase, C-terminal domain LOS88_08310 PF02798 Glutathione S-transferase, N-terminal domain LOS88_08315 PF07690 Major Facilitator Superfamily LOS88_08325 PF05164 Cell division protein ZapA LOS88_08330 PF03695 Uncharacterised protein family (UPF0149) LOS88_08335 PF01494 FAD binding domain LOS88_08340 PF01494 FAD binding domain LOS88_08345 PF08669 Glycine cleavage T-protein C-terminal barrel domain LOS88_08345 PF01571 Aminomethyltransferase folate-binding domain LOS88_08350 PF01597 Glycine cleavage H-protein LOS88_08355 PF02347 Glycine cleavage system P-protein LOS88_08360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_08360 PF08447 PAS fold LOS88_08380 PF00324 Amino acid permease LOS88_08390 PF03618 Kinase/pyrophosphorylase LOS88_08395 PF00391 PEP-utilising enzyme, mobile domain LOS88_08395 PF02896 PEP-utilising enzyme, TIM barrel domain LOS88_08395 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain LOS88_08405 PF01483 Proprotein convertase P-domain LOS88_08405 PF00082 Subtilase family LOS88_08410 PF03180 NLPA lipoprotein LOS88_08415 PF00884 Sulfatase LOS88_08415 PF11893 Domain of unknown function (DUF3413) LOS88_08420 PF07208 Protein of unknown function (DUF1414) LOS88_08425 PF04245 37-kD nucleoid-associated bacterial protein LOS88_08430 PF01547 Bacterial extracellular solute-binding protein LOS88_08435 PF14785 Maltose transport system permease protein MalF P2 domain LOS88_08435 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_08440 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_08445 PF00005 ABC transporter LOS88_08445 PF08402 TOBE domain LOS88_08450 PF03976 Polyphosphate kinase 2 (PPK2) LOS88_08455 PF00561 alpha/beta hydrolase fold LOS88_08465 PF01594 AI-2E family transporter LOS88_08475 PF01435 Peptidase family M48 LOS88_08475 PF07720 Tetratricopeptide repeat LOS88_08480 PF00578 AhpC/TSA family LOS88_08485 PF03960 ArsC family LOS88_08495 PF04336 Acyl carrier protein phosphodiesterase LOS88_08500 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_08505 PF01979 Amidohydrolase family LOS88_08510 PF03956 Lysine exporter LysO LOS88_08515 PF00005 ABC transporter LOS88_08520 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_08525 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_08530 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_08535 PF00849 RNA pseudouridylate synthase LOS88_08545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LOS88_08550 PF04209 homogentisate 1,2-dioxygenase LOS88_08560 PF14497 Glutathione S-transferase, C-terminal domain LOS88_08560 PF02798 Glutathione S-transferase, N-terminal domain LOS88_08565 PF03577 Peptidase family C69 LOS88_08570 PF07687 Peptidase dimerisation domain LOS88_08570 PF01546 Peptidase family M20/M25/M40 LOS88_08575 PF07687 Peptidase dimerisation domain LOS88_08575 PF01546 Peptidase family M20/M25/M40 LOS88_08580 PF03606 C4-dicarboxylate anaerobic carrier LOS88_08590 PF13537 Glutamine amidotransferase domain LOS88_08590 PF00733 Asparagine synthase LOS88_08600 PF00999 Sodium/hydrogen exchanger family LOS88_08600 PF02254 TrkA-N domain LOS88_08605 PF13344 Haloacid dehalogenase-like hydrolase LOS88_08610 PF00962 Adenosine/AMP deaminase LOS88_08620 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LOS88_08625 PF03741 Integral membrane protein TerC family LOS88_08625 PF03471 Transporter associated domain LOS88_08635 PF13183 4Fe-4S dicluster domain LOS88_08635 PF01565 FAD binding domain LOS88_08635 PF02913 FAD linked oxidases, C-terminal domain LOS88_08645 PF03061 Thioesterase superfamily LOS88_08650 PF00271 Helicase conserved C-terminal domain LOS88_08650 PF00270 DEAD/DEAH box helicase LOS88_08650 PF03880 DbpA RNA binding domain LOS88_08660 PF13188 PAS domain LOS88_08660 PF03707 Bacterial signalling protein N terminal repeat LOS88_08660 PF00990 Diguanylate cyclase, GGDEF domain LOS88_08660 PF00563 EAL domain LOS88_08665 PF13726 Na+-H+ antiporter family LOS88_08665 PF03553 Na+/H+ antiporter family LOS88_08670 PF00929 Exonuclease LOS88_08675 PF01569 PAP2 superfamily LOS88_08680 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LOS88_08680 PF11890 Domain of unknown function (DUF3410) LOS88_08680 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LOS88_08685 PF02774 Semialdehyde dehydrogenase, dimerisation domain LOS88_08685 PF01118 Semialdehyde dehydrogenase, NAD binding domain LOS88_08695 PF01416 tRNA pseudouridine synthase LOS88_08700 PF17848 Acetyl-coA carboxylase zinc finger domain LOS88_08700 PF01039 Carboxyl transferase domain LOS88_08705 PF08245 Mur ligase middle domain LOS88_08705 PF02875 Mur ligase family, glutamate ligase domain LOS88_08710 PF05036 Sporulation related domain LOS88_08715 PF01906 Putative heavy-metal-binding LOS88_08725 PF14824 Sirohaem biosynthesis protein central LOS88_08725 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LOS88_08725 PF10414 Sirohaem synthase dimerisation region LOS88_08730 PF13187 4Fe-4S dicluster domain LOS88_08730 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LOS88_08730 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LOS88_08735 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LOS88_08735 PF00175 Oxidoreductase NAD-binding domain LOS88_08740 PF17179 4Fe-4S dicluster domain LOS88_08745 PF01734 Patatin-like phospholipase LOS88_08755 PF00884 Sulfatase LOS88_08765 PF00696 Amino acid kinase family LOS88_08765 PF01842 ACT domain LOS88_08770 PF00583 Acetyltransferase (GNAT) family LOS88_08770 PF00696 Amino acid kinase family LOS88_08775 PF01625 Peptide methionine sulfoxide reductase LOS88_08815 PF13808 DDE_Tnp_1-associated LOS88_08815 PF01609 Transposase DDE domain LOS88_08830 PF02687 FtsX-like permease family LOS88_08830 PF12704 MacB-like periplasmic core domain LOS88_08835 PF00005 ABC transporter LOS88_08845 PF03600 Citrate transporter LOS88_08850 PF07690 Major Facilitator Superfamily LOS88_08870 PF03239 Iron permease FTR1 family LOS88_08885 PF03350 Uncharacterized protein family, UPF0114 LOS88_08905 PF01740 STAS domain LOS88_08905 PF00916 Sulfate permease family LOS88_08930 PF02796 Helix-turn-helix domain of resolvase LOS88_08930 PF00239 Resolvase, N terminal domain LOS88_08945 PF03706 Lysylphosphatidylglycerol synthase TM region LOS88_08945 PF09924 Uncharacterised conserved protein (DUF2156) LOS88_08955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_08955 PF00672 HAMP domain LOS88_08955 PF00512 His Kinase A (phospho-acceptor) domain LOS88_08960 PF00072 Response regulator receiver domain LOS88_08960 PF00486 Transcriptional regulatory protein, C terminal LOS88_08980 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LOS88_08980 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LOS88_08985 PF00313 'Cold-shock' DNA-binding domain LOS88_08990 PF02617 ATP-dependent Clp protease adaptor protein ClpS LOS88_08995 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_08995 PF02861 Clp amino terminal domain, pathogenicity island component LOS88_08995 PF10431 C-terminal, D2-small domain, of ClpB protein LOS88_08995 PF07724 AAA domain (Cdc48 subfamily) LOS88_08995 PF17871 AAA lid domain LOS88_09000 PF01176 Translation initiation factor 1A / IF-1 LOS88_09005 PF04377 Arginine-tRNA-protein transferase, C terminus LOS88_09005 PF04376 Arginine-tRNA-protein transferase, N terminus LOS88_09010 PF03588 Leucyl/phenylalanyl-tRNA protein transferase LOS88_09015 PF05433 Glycine zipper 2TM domain LOS88_09020 PF00990 Diguanylate cyclase, GGDEF domain LOS88_09020 PF17158 Membrane-associated sensor, integral membrane domain LOS88_09025 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_09030 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LOS88_09030 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LOS88_09035 PF01037 Lrp/AsnC ligand binding domain LOS88_09040 PF13491 4TM region of DNA translocase FtsK/SpoIIIE LOS88_09040 PF17854 FtsK alpha domain LOS88_09040 PF09397 Ftsk gamma domain LOS88_09040 PF01580 FtsK/SpoIIIE family LOS88_09045 PF03548 Outer membrane lipoprotein carrier protein LolA LOS88_09050 PF12002 MgsA AAA+ ATPase C terminal LOS88_09050 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_09050 PF16193 AAA C-terminal domain LOS88_09055 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LOS88_09055 PF02403 Seryl-tRNA synthetase N-terminal domain LOS88_09065 PF02674 Colicin V production protein LOS88_09070 PF00156 Phosphoribosyl transferase domain LOS88_09075 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) LOS88_09080 PF05191 Adenylate kinase, active site lid LOS88_09085 PF00762 Ferrochelatase LOS88_09095 PF00294 pfkB family carbohydrate kinase LOS88_09110 PF00563 EAL domain LOS88_09110 PF00990 Diguanylate cyclase, GGDEF domain LOS88_09110 PF03707 Bacterial signalling protein N terminal repeat LOS88_09115 PF00483 Nucleotidyl transferase LOS88_09125 PF07273 Protein of unknown function (DUF1439) LOS88_09135 PF11143 Protein of unknown function (DUF2919) LOS88_09140 PF01544 CorA-like Mg2+ transporter protein LOS88_09150 PF01012 Electron transfer flavoprotein domain LOS88_09155 PF01012 Electron transfer flavoprotein domain LOS88_09155 PF00766 Electron transfer flavoprotein FAD-binding domain LOS88_09160 PF00266 Aminotransferase class-V LOS88_09165 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LOS88_09170 PF00793 DAHP synthetase I family LOS88_09175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_09175 PF00672 HAMP domain LOS88_09180 PF04055 Radical SAM superfamily LOS88_09185 PF00271 Helicase conserved C-terminal domain LOS88_09185 PF00270 DEAD/DEAH box helicase LOS88_09190 PF00255 Glutathione peroxidase LOS88_09200 PF07478 D-ala D-ala ligase C-terminus LOS88_09200 PF01820 D-ala D-ala ligase N-terminus LOS88_09205 PF01074 Glycosyl hydrolases family 38 N-terminal domain LOS88_09205 PF07748 Glycosyl hydrolases family 38 C-terminal domain LOS88_09205 PF09261 Alpha mannosidase middle domain LOS88_09210 PF02378 Phosphotransferase system, EIIC LOS88_09210 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_09210 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_09215 PF07702 UTRA domain LOS88_09215 PF00392 Bacterial regulatory proteins, gntR family LOS88_09220 PF13742 OB-fold nucleic acid binding domain LOS88_09220 PF02601 Exonuclease VII, large subunit LOS88_09225 PF01292 Prokaryotic cytochrome b561 LOS88_09230 PF00478 IMP dehydrogenase / GMP reductase domain LOS88_09230 PF00571 CBS domain LOS88_09235 PF00958 GMP synthase C terminal domain LOS88_09235 PF00117 Glutamine amidotransferase class-I LOS88_09235 PF02540 NAD synthase LOS88_09245 PF13737 Transposase DDE domain LOS88_09285 PF05724 Thiopurine S-methyltransferase (TPMT) LOS88_09290 PF05193 Peptidase M16 inactive domain LOS88_09290 PF16187 Middle or third domain of peptidase_M16 LOS88_09290 PF00675 Insulinase (Peptidase family M16) LOS88_09295 PF00300 Histidine phosphatase superfamily (branch 1) LOS88_09305 PF00892 EamA-like transporter family LOS88_09310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_09315 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain LOS88_09320 PF00271 Helicase conserved C-terminal domain LOS88_09320 PF03461 TRCF domain LOS88_09320 PF17757 UvrB interaction domain LOS88_09320 PF02559 CarD-like/TRCF domain LOS88_09320 PF00270 DEAD/DEAH box helicase LOS88_09330 PF02687 FtsX-like permease family LOS88_09330 PF12704 MacB-like periplasmic core domain LOS88_09335 PF00005 ABC transporter LOS88_09340 PF12704 MacB-like periplasmic core domain LOS88_09340 PF02687 FtsX-like permease family LOS88_09355 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_09355 PF05698 Bacterial trigger factor protein (TF) C-terminus LOS88_09355 PF05697 Bacterial trigger factor protein (TF) LOS88_09360 PF00574 Clp protease LOS88_09365 PF06689 ClpX C4-type zinc finger LOS88_09365 PF07724 AAA domain (Cdc48 subfamily) LOS88_09365 PF10431 C-terminal, D2-small domain, of ClpB protein LOS88_09370 PF02190 ATP-dependent protease La (LON) substrate-binding domain LOS88_09370 PF05362 Lon protease (S16) C-terminal proteolytic domain LOS88_09370 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_09375 PF00216 Bacterial DNA-binding protein LOS88_09380 PF13145 PPIC-type PPIASE domain LOS88_09390 PF00005 ABC transporter LOS88_09390 PF12848 ABC transporter LOS88_09395 PF12167 Arm DNA-binding domain LOS88_09395 PF00589 Phage integrase family LOS88_09450 PF04381 Putative exonuclease, RdgC LOS88_09480 PF12684 PDDEXK-like domain of unknown function (DUF3799) LOS88_09480 PF06630 Enterobacterial exodeoxyribonuclease VIII LOS88_09520 PF03374 Phage antirepressor protein KilAC domain LOS88_09520 PF09669 Phage regulatory protein Rha (Phage_pRha) LOS88_09710 PF08346 AntA/AntB antirepressor LOS88_09710 PF10548 P22AR C-terminal domain LOS88_09750 PF03869 Arc-like DNA binding domain LOS88_09765 PF00474 Sodium:solute symporter family LOS88_09770 PF04341 Protein of unknown function, DUF485 LOS88_09785 PF00378 Enoyl-CoA hydratase/isomerase LOS88_09800 PF13737 Transposase DDE domain LOS88_09825 PF13737 Transposase DDE domain LOS88_09835 PF01235 Sodium:alanine symporter family LOS88_09845 PF06167 Glucose-regulated metallo-peptidase M90 LOS88_09880 PF01266 FAD dependent oxidoreductase LOS88_09885 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_09890 PF00005 ABC transporter LOS88_09900 PF00392 Bacterial regulatory proteins, gntR family LOS88_09900 PF07702 UTRA domain LOS88_09905 PF00266 Aminotransferase class-V LOS88_09910 PF00202 Aminotransferase class-III LOS88_09920 PF03918 Cytochrome C biogenesis protein LOS88_09925 PF08534 Redoxin LOS88_09930 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LOS88_09930 PF01578 Cytochrome C assembly protein LOS88_09935 PF03916 Polysulphide reductase, NrfD LOS88_09940 PF00037 4Fe-4S binding domain LOS88_09940 PF13247 4Fe-4S dicluster domain LOS88_09945 PF13435 Cytochrome c554 and c-prime LOS88_09945 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) LOS88_09950 PF02335 Cytochrome c552 LOS88_09960 PF13183 4Fe-4S dicluster domain LOS88_09960 PF02754 Cysteine-rich domain LOS88_09965 PF00890 FAD binding domain LOS88_09970 PF04324 BFD-like [2Fe-2S] binding domain LOS88_09970 PF01266 FAD dependent oxidoreductase LOS88_09975 PF02810 SEC-C motif LOS88_09980 PF17200 Single Cache domain 2 LOS88_09980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_09980 PF00672 HAMP domain LOS88_09985 PF00480 ROK family LOS88_09985 PF01047 MarR family LOS88_09990 PF03942 DTW domain LOS88_09995 PF01925 Sulfite exporter TauE/SafE LOS88_10000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_10000 PF03466 LysR substrate binding domain LOS88_10010 PF14525 AraC-binding-like domain LOS88_10010 PF12833 Helix-turn-helix domain LOS88_10015 PF11398 Protein of unknown function (DUF2813) LOS88_10025 PF00128 Alpha amylase, catalytic domain LOS88_10025 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LOS88_10065 PF00883 Cytosol aminopeptidase family, catalytic domain LOS88_10065 PF02789 Cytosol aminopeptidase family, N-terminal domain LOS88_10070 PF13419 Haloacid dehalogenase-like hydrolase LOS88_10085 PF01207 Dihydrouridine synthase (Dus) LOS88_10090 PF04304 Protein of unknown function (DUF454) LOS88_10095 PF00156 Phosphoribosyl transferase domain LOS88_10100 PF12169 DNA polymerase III subunits gamma and tau domain III LOS88_10100 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding LOS88_10100 PF12170 DNA polymerase III tau subunit V interacting with alpha LOS88_10105 PF02575 YbaB/EbfC DNA-binding family LOS88_10110 PF01261 Xylose isomerase-like TIM barrel LOS88_10115 PF03466 LysR substrate binding domain LOS88_10115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_10125 PF03279 Bacterial lipid A biosynthesis acyltransferase LOS88_10130 PF03279 Bacterial lipid A biosynthesis acyltransferase LOS88_10145 PF00990 Diguanylate cyclase, GGDEF domain LOS88_10155 PF00136 DNA polymerase family B LOS88_10155 PF03104 DNA polymerase family B, exonuclease domain LOS88_10170 PF01863 Protein of unknown function DUF45 LOS88_10185 PF03606 C4-dicarboxylate anaerobic carrier LOS88_10200 PF05430 S-adenosyl-L-methionine-dependent methyltransferase LOS88_10200 PF01266 FAD dependent oxidoreductase LOS88_10205 PF02801 Beta-ketoacyl synthase, C-terminal domain LOS88_10205 PF00109 Beta-ketoacyl synthase, N-terminal domain LOS88_10215 PF06826 Predicted Permease Membrane Region LOS88_10215 PF02080 TrkA-C domain LOS88_10230 PF04851 Type III restriction enzyme, res subunit LOS88_10230 PF17757 UvrB interaction domain LOS88_10230 PF02151 UvrB/uvrC motif LOS88_10230 PF00271 Helicase conserved C-terminal domain LOS88_10230 PF12344 Ultra-violet resistance protein B LOS88_10240 PF09335 SNARE associated Golgi protein LOS88_10245 PF02600 Disulfide bond formation protein DsbB LOS88_10250 PF06450 Bacterial Na+/H+ antiporter B (NhaB) LOS88_10255 PF07840 FadR C-terminal domain LOS88_10255 PF00392 Bacterial regulatory proteins, gntR family LOS88_10265 PF07152 YaeQ protein LOS88_10275 PF01381 Helix-turn-helix LOS88_10275 PF00717 Peptidase S24-like LOS88_10365 PF01609 Transposase DDE domain LOS88_10365 PF13808 DDE_Tnp_1-associated LOS88_10395 PF08461 Ribonuclease R winged-helix domain LOS88_10400 PF11985 Protein of unknown function (DUF3486) LOS88_10405 PF03237 Terminase-like family LOS88_10410 PF06074 Protein of unknown function (DUF935) LOS88_10460 PF00665 Integrase core domain LOS88_10465 PF01695 IstB-like ATP binding protein LOS88_10475 PF10123 Mu-like prophage I protein LOS88_10485 PF10123 Mu-like prophage I protein LOS88_10490 PF10124 Mu-like prophage major head subunit gpT LOS88_10585 PF02954 Bacterial regulatory protein, Fis family LOS88_10585 PF00158 Sigma-54 interaction domain LOS88_10585 PF13188 PAS domain LOS88_10610 PF13784 Fic/DOC family N-terminal LOS88_10610 PF02661 Fic/DOC family LOS88_10620 PF02384 N-6 DNA Methylase LOS88_10680 PF01554 MatE LOS88_10685 PF06786 Uncharacterised protein family (UPF0253) LOS88_10690 PF00677 Lumazine binding domain LOS88_10700 PF13419 Haloacid dehalogenase-like hydrolase LOS88_10705 PF01370 NAD dependent epimerase/dehydratase family LOS88_10705 PF02222 ATP-grasp domain LOS88_10710 PF00892 EamA-like transporter family LOS88_10725 PF02525 Flavodoxin-like fold LOS88_10750 PF13509 S1 domain LOS88_10750 PF17783 CvfB-like winged helix domain LOS88_10760 PF04269 Protein of unknown function, DUF440 LOS88_10765 PF00912 Transglycosylase LOS88_10770 PF04269 Protein of unknown function, DUF440 LOS88_10775 PF03776 Septum formation topological specificity factor MinE LOS88_10780 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LOS88_10785 PF03775 Septum formation inhibitor MinC, C-terminal domain LOS88_10785 PF05209 Septum formation inhibitor MinC, N-terminal domain LOS88_10790 PF05166 YcgL domain LOS88_10795 PF03315 Serine dehydratase beta chain LOS88_10795 PF03313 Serine dehydratase alpha chain LOS88_10800 PF03313 Serine dehydratase alpha chain LOS88_10800 PF03315 Serine dehydratase beta chain LOS88_10805 PF06865 Pyrimidine/purine nucleoside phosphorylase LOS88_10810 PF01609 Transposase DDE domain LOS88_10810 PF13808 DDE_Tnp_1-associated LOS88_10815 PF00375 Sodium:dicarboxylate symporter family LOS88_10820 PF00365 Phosphofructokinase LOS88_10825 PF00121 Triosephosphate isomerase LOS88_10830 PF02698 DUF218 domain LOS88_10835 PF13847 Methyltransferase domain LOS88_10840 PF17192 MukF middle domain LOS88_10840 PF17193 MukF C-terminal domain LOS88_10840 PF03882 MukF winged-helix domain LOS88_10845 PF04288 MukE-like family LOS88_10850 PF04310 MukB N-terminal LOS88_10850 PF16330 MukB hinge domain LOS88_10855 PF03330 Lytic transglycolase LOS88_10870 PF13737 Transposase DDE domain LOS88_10895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LOS88_10895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LOS88_10900 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_10905 PF01546 Peptidase family M20/M25/M40 LOS88_10905 PF07687 Peptidase dimerisation domain LOS88_10910 PF01979 Amidohydrolase family LOS88_10915 PF00696 Amino acid kinase family LOS88_10920 PF00892 EamA-like transporter family LOS88_10925 PF01699 Sodium/calcium exchanger protein LOS88_10930 PF02625 XdhC and CoxI family LOS88_10930 PF13478 XdhC Rossmann domain LOS88_10940 PF12804 MobA-like NTP transferase domain LOS88_10945 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LOS88_10945 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_10950 PF01979 Amidohydrolase family LOS88_10955 PF00941 FAD binding domain in molybdopterin dehydrogenase LOS88_10960 PF01799 [2Fe-2S] binding domain LOS88_10960 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LOS88_10960 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LOS88_10965 PF00860 Permease family LOS88_10970 PF01979 Amidohydrolase family LOS88_10975 PF00860 Permease family LOS88_10980 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LOS88_10980 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LOS88_10985 PF03450 CO dehydrogenase flavoprotein C-terminal domain LOS88_10985 PF00941 FAD binding domain in molybdopterin dehydrogenase LOS88_10990 PF01799 [2Fe-2S] binding domain LOS88_10990 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_10995 PF05433 Glycine zipper 2TM domain LOS88_11005 PF03606 C4-dicarboxylate anaerobic carrier LOS88_11015 PF13737 Transposase DDE domain LOS88_11025 PF00990 Diguanylate cyclase, GGDEF domain LOS88_11025 PF07694 5TMR of 5TMR-LYT LOS88_11030 PF13808 DDE_Tnp_1-associated LOS88_11030 PF01609 Transposase DDE domain LOS88_11035 PF08448 PAS fold LOS88_11035 PF00990 Diguanylate cyclase, GGDEF domain LOS88_11045 PF00300 Histidine phosphatase superfamily (branch 1) LOS88_11050 PF00990 Diguanylate cyclase, GGDEF domain LOS88_11050 PF08448 PAS fold LOS88_11055 PF01713 Smr domain LOS88_11060 PF05175 Methyltransferase small domain LOS88_11065 PF01264 Chorismate synthase LOS88_11075 PF00271 Helicase conserved C-terminal domain LOS88_11075 PF00270 DEAD/DEAH box helicase LOS88_11085 PF01124 MAPEG family LOS88_11095 PF03222 Tryptophan/tyrosine permease family LOS88_11100 PF00356 Bacterial regulatory proteins, lacI family LOS88_11100 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LOS88_11105 PF00381 PTS HPr component phosphorylation site LOS88_11105 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_11110 PF00294 pfkB family carbohydrate kinase LOS88_11115 PF02378 Phosphotransferase system, EIIC LOS88_11115 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_11120 PF06560 Glucose-6-phosphate isomerase (GPI) LOS88_11125 PF00356 Bacterial regulatory proteins, lacI family LOS88_11125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LOS88_11140 PF03610 PTS system fructose IIA component LOS88_11140 PF03830 PTS system sorbose subfamily IIB component LOS88_11145 PF03609 PTS system sorbose-specific iic component LOS88_11150 PF03613 PTS system mannose/fructose/sorbose family IID component LOS88_11160 PF06945 Protein of unknown function (DUF1289) LOS88_11165 PF03562 MltA specific insert domain LOS88_11165 PF06725 3D domain LOS88_11170 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_11175 PF00268 Ribonucleotide reductase, small chain LOS88_11180 PF03477 ATP cone domain LOS88_11180 PF02867 Ribonucleotide reductase, barrel domain LOS88_11180 PF00317 Ribonucleotide reductase, all-alpha domain LOS88_11185 PF13419 Haloacid dehalogenase-like hydrolase LOS88_11195 PF00521 DNA gyrase/topoisomerase IV, subunit A LOS88_11195 PF03989 DNA gyrase C-terminal domain, beta-propeller LOS88_11210 PF04055 Radical SAM superfamily LOS88_11220 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LOS88_11220 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LOS88_11220 PF02824 TGS domain LOS88_11220 PF03129 Anticodon binding domain LOS88_11225 PF05198 Translation initiation factor IF-3, N-terminal domain LOS88_11225 PF00707 Translation initiation factor IF-3, C-terminal domain LOS88_11230 PF01632 Ribosomal protein L35 LOS88_11235 PF00453 Ribosomal protein L20 LOS88_11240 PF01409 tRNA synthetases class II core domain (F) LOS88_11240 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LOS88_11245 PF03484 tRNA synthetase B5 domain LOS88_11245 PF03147 Ferredoxin-fold anticodon binding domain LOS88_11245 PF03483 B3/4 domain LOS88_11245 PF01588 Putative tRNA binding domain LOS88_11245 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LOS88_11250 PF00216 Bacterial DNA-binding protein LOS88_11255 PF09456 RcsC Alpha-Beta-Loop (ABL) LOS88_11255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_11255 PF00072 Response regulator receiver domain LOS88_11255 PF00512 His Kinase A (phospho-acceptor) domain LOS88_11270 PF02146 Sir2 family LOS88_11280 PF00990 Diguanylate cyclase, GGDEF domain LOS88_11280 PF03707 Bacterial signalling protein N terminal repeat LOS88_11280 PF00563 EAL domain LOS88_11285 PF00356 Bacterial regulatory proteins, lacI family LOS88_11290 PF00294 pfkB family carbohydrate kinase LOS88_11295 PF13407 Periplasmic binding protein domain LOS88_11300 PF02653 Branched-chain amino acid transport system / permease component LOS88_11305 PF00005 ABC transporter LOS88_11310 PF05025 RbsD / FucU transport protein family LOS88_11315 PF00043 Glutathione S-transferase, C-terminal domain LOS88_11315 PF02798 Glutathione S-transferase, N-terminal domain LOS88_11330 PF13416 Bacterial extracellular solute-binding protein LOS88_11335 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_11340 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_11355 PF08402 TOBE domain LOS88_11355 PF00005 ABC transporter LOS88_11370 PF01171 PP-loop family LOS88_11375 PF00582 Universal stress protein family LOS88_11380 PF00027 Cyclic nucleotide-binding domain LOS88_11380 PF13545 Crp-like helix-turn-helix domain LOS88_11395 PF00403 Heavy-metal-associated domain LOS88_11405 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LOS88_11405 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP LOS88_11420 PF00115 Cytochrome C and Quinol oxidase polypeptide I LOS88_11430 PF13185 GAF domain LOS88_11435 PF17516 ProQ C-terminal domain LOS88_11435 PF04352 ProQ/FINO family LOS88_11440 PF03572 Peptidase family S41 LOS88_11440 PF17804 Tail specific protease N-terminal domain LOS88_11440 PF00595 PDZ domain LOS88_11440 PF11818 C-terminal domain of tail specific protease (DUF3340) LOS88_11445 PF11940 Domain of unknown function (DUF3458) Ig-like fold LOS88_11445 PF17432 Domain of unknown function (DUF3458_C) ARM repeats LOS88_11445 PF01433 Peptidase family M1 domain LOS88_11455 PF05088 Bacterial NAD-glutamate dehydrogenase LOS88_11460 PF01180 Dihydroorotate dehydrogenase LOS88_11465 PF07126 Cell-division protein ZapC LOS88_11470 PF01197 Ribosomal protein L31 LOS88_11475 PF00444 Ribosomal protein L36 LOS88_11480 PF10672 S-adenosylmethionine-dependent methyltransferase LOS88_11480 PF02926 THUMP domain LOS88_11480 PF01170 Putative RNA methylase family UPF0020 LOS88_11490 PF00005 ABC transporter LOS88_11490 PF16326 ABC transporter C-terminal domain LOS88_11490 PF12848 ABC transporter LOS88_11495 PF04957 Ribosome modulation factor LOS88_11500 PF07977 FabA-like domain LOS88_11505 PF13654 AAA domain LOS88_11505 PF05362 Lon protease (S16) C-terminal proteolytic domain LOS88_11670 PF07130 YebG protein LOS88_11675 PF01674 Lipase (class 2) LOS88_11680 PF00106 short chain dehydrogenase LOS88_11705 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain LOS88_11705 PF06974 Protein of unknown function (DUF1298) LOS88_11720 PF03972 MmgE/PrpD family LOS88_11725 PF00285 Citrate synthase, C-terminal domain LOS88_11740 PF04403 Paraquat-inducible protein A LOS88_11745 PF02470 MlaD protein LOS88_11755 PF02583 Metal-sensitive transcriptional repressor LOS88_11760 PF01545 Cation efflux family LOS88_11765 PF01022 Bacterial regulatory protein, arsR family LOS88_11770 PF01189 16S rRNA methyltransferase RsmB/F LOS88_11770 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF LOS88_11770 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF LOS88_11780 PF00589 Phage integrase family LOS88_11785 PF01026 TatD related DNase LOS88_11790 PF09115 DNA polymerase III, delta subunit, C terminal LOS88_11795 PF02223 Thymidylate kinase LOS88_11800 PF02618 YceG-like family LOS88_11805 PF01063 Amino-transferase class IV LOS88_11810 PF00109 Beta-ketoacyl synthase, N-terminal domain LOS88_11810 PF02801 Beta-ketoacyl synthase, C-terminal domain LOS88_11815 PF00550 Phosphopantetheine attachment site LOS88_11825 PF00698 Acyl transferase domain LOS88_11830 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LOS88_11830 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LOS88_11835 PF02504 Fatty acid synthesis protein LOS88_11840 PF01783 Ribosomal L32p protein family LOS88_11845 PF02620 Large ribosomal RNA subunit accumulation protein YceD LOS88_11850 PF02545 Maf-like protein LOS88_11855 PF13419 Haloacid dehalogenase-like hydrolase LOS88_11860 PF01479 S4 domain LOS88_11860 PF00849 RNA pseudouridylate synthase LOS88_11865 PF12111 Polyribonucleotide phosphorylase C terminal LOS88_11865 PF10150 Ribonuclease E/G family LOS88_11865 PF00575 S1 RNA binding domain LOS88_11875 PF01384 Phosphate transporter family LOS88_11880 PF00692 dUTPase LOS88_11885 PF00485 Phosphoribulokinase / Uridine kinase family LOS88_11890 PF10609 NUBPL iron-transfer P-loop NTPase LOS88_11895 PF08264 Anticodon-binding domain of tRNA LOS88_11895 PF09334 tRNA synthetases class I (M) LOS88_11895 PF01588 Putative tRNA binding domain LOS88_11905 PF00708 Acylphosphatase LOS88_11910 PF12729 Four helix bundle sensory module for signal transduction LOS88_11910 PF00672 HAMP domain LOS88_11910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_11915 PF10672 S-adenosylmethionine-dependent methyltransferase LOS88_11915 PF17785 PUA-like domain LOS88_11930 PF00586 AIR synthase related protein, N-terminal domain LOS88_11930 PF02769 AIR synthase related protein, C-terminal domain LOS88_11940 PF00753 Metallo-beta-lactamase superfamily LOS88_11945 PF01612 3'-5' exonuclease LOS88_11945 PF00570 HRDC domain LOS88_11950 PF00501 AMP-binding enzyme LOS88_11950 PF13193 AMP-binding enzyme C-terminal domain LOS88_11955 PF12697 Alpha/beta hydrolase family LOS88_11965 PF00814 Glycoprotease family LOS88_11970 PF13307 Helicase C-terminal domain LOS88_11970 PF04851 Type III restriction enzyme, res subunit LOS88_11980 PF01634 ATP phosphoribosyltransferase LOS88_11980 PF08029 HisG, C-terminal domain LOS88_11985 PF00815 Histidinol dehydrogenase LOS88_11990 PF00155 Aminotransferase class I and II LOS88_11995 PF00475 Imidazoleglycerol-phosphate dehydratase LOS88_11995 PF08645 Polynucleotide kinase 3 phosphatase LOS88_12000 PF00117 Glutamine amidotransferase class-I LOS88_12005 PF00977 Histidine biosynthesis protein LOS88_12010 PF00977 Histidine biosynthesis protein LOS88_12015 PF01502 Phosphoribosyl-AMP cyclohydrolase LOS88_12015 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LOS88_12030 PF03831 PhnA domain LOS88_12030 PF08274 PhnA Zinc-Ribbon LOS88_12040 PF00425 chorismate binding enzyme LOS88_12040 PF04715 Anthranilate synthase component I, N terminal region LOS88_12045 PF00293 NUDIX domain LOS88_12050 PF03222 Tryptophan/tyrosine permease family LOS88_12060 PF00375 Sodium:dicarboxylate symporter family LOS88_12065 PF00270 DEAD/DEAH box helicase LOS88_12065 PF00271 Helicase conserved C-terminal domain LOS88_12065 PF00570 HRDC domain LOS88_12065 PF16124 RecQ zinc-binding LOS88_12065 PF09382 RQC domain LOS88_12070 PF08298 PrkA AAA domain LOS88_12070 PF06798 PrkA serine protein kinase C-terminal domain LOS88_12075 PF04285 Protein of unknown function (DUF444) LOS88_12080 PF04293 SpoVR like protein LOS88_12085 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LOS88_12085 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LOS88_12085 PF00378 Enoyl-CoA hydratase/isomerase LOS88_12090 PF02803 Thiolase, C-terminal domain LOS88_12090 PF00108 Thiolase, N-terminal domain LOS88_12095 PF07726 ATPase family associated with various cellular activities (AAA) LOS88_12095 PF17863 AAA lid domain LOS88_12100 PF01882 Protein of unknown function DUF58 LOS88_12115 PF13519 von Willebrand factor type A domain LOS88_12125 PF04542 Sigma-70 region 2 LOS88_12125 PF08281 Sigma-70, region 4 LOS88_12135 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LOS88_12140 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) LOS88_12145 PF00563 EAL domain LOS88_12145 PF08668 HDOD domain LOS88_12150 PF00108 Thiolase, N-terminal domain LOS88_12150 PF02803 Thiolase, C-terminal domain LOS88_12155 PF00376 MerR family regulatory protein LOS88_12155 PF09278 MerR, DNA binding LOS88_12160 PF01386 Ribosomal L25p family LOS88_12170 PF00271 Helicase conserved C-terminal domain LOS88_12170 PF00270 DEAD/DEAH box helicase LOS88_12170 PF11898 Domain of unknown function (DUF3418) LOS88_12170 PF04408 Helicase associated domain (HA2) LOS88_12170 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold LOS88_12175 PF01743 Poly A polymerase head domain LOS88_12175 PF02272 DHHA1 domain LOS88_12175 PF01368 DHH family LOS88_12175 PF00571 CBS domain LOS88_12180 PF01966 HD domain LOS88_12185 PF00884 Sulfatase LOS88_12190 PF07726 ATPase family associated with various cellular activities (AAA) LOS88_12190 PF17863 AAA lid domain LOS88_12210 PF13519 von Willebrand factor type A domain LOS88_12210 PF07584 Aerotolerance regulator N-terminal LOS88_12220 PF03466 LysR substrate binding domain LOS88_12220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12225 PF03781 Sulfatase-modifying factor enzyme 1 LOS88_12235 PF13186 Iron-sulfur cluster-binding domain LOS88_12235 PF04055 Radical SAM superfamily LOS88_12240 PF00929 Exonuclease LOS88_12240 PF08411 Exonuclease C-terminal LOS88_12255 PF03788 LrgA family LOS88_12260 PF04172 LrgB-like family LOS88_12265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LOS88_12265 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region LOS88_12270 PF01212 Beta-eliminating lyase LOS88_12280 PF04244 Deoxyribodipyrimidine photo-lyase-related protein LOS88_12285 PF01266 FAD dependent oxidoreductase LOS88_12290 PF02774 Semialdehyde dehydrogenase, dimerisation domain LOS88_12290 PF01118 Semialdehyde dehydrogenase, NAD binding domain LOS88_12295 PF02634 FdhD/NarQ family LOS88_12315 PF13247 4Fe-4S dicluster domain LOS88_12315 PF12800 4Fe-4S binding domain LOS88_12330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_12335 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE LOS88_12340 PF01750 Hydrogenase maturation protease LOS88_12345 PF00374 Nickel-dependent hydrogenase LOS88_12350 PF03916 Polysulphide reductase, NrfD LOS88_12355 PF13247 4Fe-4S dicluster domain LOS88_12360 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LOS88_12360 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LOS88_12365 PF01609 Transposase DDE domain LOS88_12370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_12370 PF00672 HAMP domain LOS88_12370 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LOS88_12370 PF00072 Response regulator receiver domain LOS88_12370 PF01627 Hpt domain LOS88_12370 PF00512 His Kinase A (phospho-acceptor) domain LOS88_12390 PF13808 DDE_Tnp_1-associated LOS88_12390 PF01609 Transposase DDE domain LOS88_12395 PF00072 Response regulator receiver domain LOS88_12400 PF01609 Transposase DDE domain LOS88_12400 PF13808 DDE_Tnp_1-associated LOS88_12410 PF00563 EAL domain LOS88_12410 PF01590 GAF domain LOS88_12410 PF00990 Diguanylate cyclase, GGDEF domain LOS88_12410 PF00360 Phytochrome region LOS88_12415 PF00534 Glycosyl transferases group 1 LOS88_12415 PF00862 Sucrose synthase LOS88_12420 PF13439 Glycosyltransferase Family 4 LOS88_12420 PF00534 Glycosyl transferases group 1 LOS88_12515 PF00534 Glycosyl transferases group 1 LOS88_12515 PF13439 Glycosyltransferase Family 4 LOS88_12520 PF00535 Glycosyl transferase family 2 LOS88_12520 PF07238 PilZ domain LOS88_12520 PF03552 Cellulose synthase LOS88_12525 PF02397 Bacterial sugar transferase LOS88_12530 PF00534 Glycosyl transferases group 1 LOS88_12535 PF00072 Response regulator receiver domain LOS88_12535 PF00211 Adenylate and Guanylate cyclase catalytic domain LOS88_12565 PF00512 His Kinase A (phospho-acceptor) domain LOS88_12565 PF00072 Response regulator receiver domain LOS88_12565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_12565 PF09308 LuxQ, periplasmic LOS88_12585 PF00239 Resolvase, N terminal domain LOS88_12585 PF02796 Helix-turn-helix domain of resolvase LOS88_12600 PF04002 RadC-like JAB domain LOS88_12630 PF02384 N-6 DNA Methylase LOS88_12650 PF01925 Sulfite exporter TauE/SafE LOS88_12655 PF13520 Amino acid permease LOS88_12665 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LOS88_12665 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LOS88_12670 PF00378 Enoyl-CoA hydratase/isomerase LOS88_12675 PF00378 Enoyl-CoA hydratase/isomerase LOS88_12680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LOS88_12680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LOS88_12680 PF02770 Acyl-CoA dehydrogenase, middle domain LOS88_12685 PF02770 Acyl-CoA dehydrogenase, middle domain LOS88_12685 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LOS88_12685 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LOS88_12690 PF01039 Carboxyl transferase domain LOS88_12695 PF00378 Enoyl-CoA hydratase/isomerase LOS88_12700 PF02785 Biotin carboxylase C-terminal domain LOS88_12700 PF00289 Biotin carboxylase, N-terminal domain LOS88_12700 PF00364 Biotin-requiring enzyme LOS88_12700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LOS88_12705 PF00682 HMGL-like LOS88_12710 PF00376 MerR family regulatory protein LOS88_12710 PF09278 MerR, DNA binding LOS88_12725 PF01184 GPR1/FUN34/yaaH family LOS88_12730 PF01609 Transposase DDE domain LOS88_12730 PF13808 DDE_Tnp_1-associated LOS88_12755 PF02629 CoA binding domain LOS88_12755 PF00549 CoA-ligase LOS88_12760 PF08442 ATP-grasp domain LOS88_12760 PF00549 CoA-ligase LOS88_12765 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LOS88_12765 PF02817 e3 binding domain LOS88_12765 PF00364 Biotin-requiring enzyme LOS88_12770 PF16078 2-oxoglutarate dehydrogenase N-terminus LOS88_12770 PF00676 Dehydrogenase E1 component LOS88_12770 PF16870 2-oxoglutarate dehydrogenase C-terminal LOS88_12770 PF02779 Transketolase, pyrimidine binding domain LOS88_12775 PF13085 2Fe-2S iron-sulfur cluster binding domain LOS88_12780 PF02910 Fumarate reductase flavoprotein C-term LOS88_12780 PF00890 FAD binding domain LOS88_12785 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LOS88_12790 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LOS88_12800 PF00285 Citrate synthase, C-terminal domain LOS88_12810 PF13673 Acetyltransferase (GNAT) domain LOS88_12825 PF13673 Acetyltransferase (GNAT) domain LOS88_12830 PF00465 Iron-containing alcohol dehydrogenase LOS88_12835 PF08543 Phosphomethylpyrimidine kinase LOS88_12860 PF00664 ABC transporter transmembrane region LOS88_12860 PF00005 ABC transporter LOS88_12865 PF00005 ABC transporter LOS88_12865 PF00664 ABC transporter transmembrane region LOS88_12870 PF00512 His Kinase A (phospho-acceptor) domain LOS88_12870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_12870 PF00072 Response regulator receiver domain LOS88_12870 PF01627 Hpt domain LOS88_12870 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LOS88_12870 PF00672 HAMP domain LOS88_12875 PF00085 Thioredoxin LOS88_12880 PF00939 Sodium:sulfate symporter transmembrane region LOS88_12885 PF00343 Carbohydrate phosphorylase LOS88_12900 PF03692 Putative zinc- or iron-chelating domain LOS88_12905 PF01228 Glycine radical LOS88_12905 PF02901 Pyruvate formate lyase-like LOS88_12910 PF01226 Formate/nitrite transporter LOS88_12915 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding LOS88_12915 PF18381 YcaO cyclodehydratase C-terminal domain LOS88_12920 PF00232 Glycosyl hydrolase family 1 LOS88_12925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12925 PF03466 LysR substrate binding domain LOS88_12935 PF08267 Cobalamin-independent synthase, N-terminal domain LOS88_12935 PF01717 Cobalamin-independent synthase, Catalytic domain LOS88_12940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12940 PF03466 LysR substrate binding domain LOS88_12945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12945 PF03466 LysR substrate binding domain LOS88_12950 PF00857 Isochorismatase family LOS88_12955 PF02678 Pirin LOS88_12955 PF05726 Pirin C-terminal cupin domain LOS88_12965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12965 PF03466 LysR substrate binding domain LOS88_12970 PF03466 LysR substrate binding domain LOS88_12970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_12975 PF13460 NAD(P)H-binding LOS88_12985 PF01053 Cys/Met metabolism PLP-dependent enzyme LOS88_12990 PF00501 AMP-binding enzyme LOS88_12995 PF08891 YfcL protein LOS88_13005 PF03741 Integral membrane protein TerC family LOS88_13010 PF00691 OmpA family LOS88_13015 PF17152 Periplasmic sensor domain LOS88_13015 PF00990 Diguanylate cyclase, GGDEF domain LOS88_13025 PF18024 Helix-turn-helix domain LOS88_13025 PF00158 Sigma-54 interaction domain LOS88_13035 PF01329 Pterin 4 alpha carbinolamine dehydratase LOS88_13040 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LOS88_13045 PF00171 Aldehyde dehydrogenase family LOS88_13050 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13055 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13060 PF00005 ABC transporter LOS88_13060 PF08402 TOBE domain LOS88_13065 PF13416 Bacterial extracellular solute-binding protein LOS88_13070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_13070 PF03466 LysR substrate binding domain LOS88_13075 PF05128 Domain of unknown function (DUF697) LOS88_13080 PF04317 YcjX-like family, DUF463 LOS88_13090 PF06667 Phage shock protein B LOS88_13095 PF04012 PspA/IM30 family LOS88_13100 PF00158 Sigma-54 interaction domain LOS88_13100 PF02954 Bacterial regulatory protein, Fis family LOS88_13105 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_13110 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13115 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13115 PF12911 N-terminal TM domain of oligopeptide transport permease C LOS88_13120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_13120 PF00005 ABC transporter LOS88_13125 PF00005 ABC transporter LOS88_13130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_13130 PF00183 Hsp90 protein LOS88_13135 PF13662 Toprim domain LOS88_13135 PF02132 RecR protein LOS88_13145 PF10722 Putative bacterial sensory transduction regulator LOS88_13155 PF00265 Thymidine kinase LOS88_13160 PF03553 Na+/H+ antiporter family LOS88_13165 PF00816 H-NS histone family LOS88_13170 PF01923 Cobalamin adenosyltransferase LOS88_13175 PF12843 Putative quorum-sensing-regulated virulence factor LOS88_13180 PF04055 Radical SAM superfamily LOS88_13185 PF06508 Queuosine biosynthesis protein QueC LOS88_13200 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LOS88_13205 PF18073 Rubredoxin metal binding domain LOS88_13215 PF00216 Bacterial DNA-binding protein LOS88_13220 PF00575 S1 RNA binding domain LOS88_13225 PF02224 Cytidylate kinase LOS88_13230 PF00925 GTP cyclohydrolase II LOS88_13235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_13235 PF03466 LysR substrate binding domain LOS88_13240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_13240 PF03466 LysR substrate binding domain LOS88_13245 PF07690 Major Facilitator Superfamily LOS88_13265 PF03806 AbgT putative transporter family LOS88_13270 PF00563 EAL domain LOS88_13270 PF00990 Diguanylate cyclase, GGDEF domain LOS88_13270 PF03707 Bacterial signalling protein N terminal repeat LOS88_13270 PF13188 PAS domain LOS88_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_13275 PF03466 LysR substrate binding domain LOS88_13280 PF00072 Response regulator receiver domain LOS88_13290 PF01212 Beta-eliminating lyase LOS88_13295 PF00106 short chain dehydrogenase LOS88_13305 PF00248 Aldo/keto reductase family LOS88_13310 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) LOS88_13320 PF00005 ABC transporter LOS88_13325 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13330 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_13335 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_13340 PF03411 Penicillin-insensitive murein endopeptidase LOS88_13350 PF04536 TPM domain LOS88_13365 PF01618 MotA/TolQ/ExbB proton channel family LOS88_13370 PF13677 Membrane MotB of proton-channel complex MotA/MotB LOS88_13370 PF00691 OmpA family LOS88_13375 PF07715 TonB-dependent Receptor Plug Domain LOS88_13375 PF00593 TonB dependent receptor LOS88_13380 PF00326 Prolyl oligopeptidase family LOS88_13380 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LOS88_13400 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LOS88_13405 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LOS88_13410 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LOS88_13410 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LOS88_13420 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LOS88_13420 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LOS88_13425 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LOS88_13425 PF00384 Molybdopterin oxidoreductase LOS88_13425 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LOS88_13430 PF00146 NADH dehydrogenase LOS88_13435 PF12838 4Fe-4S dicluster domain LOS88_13440 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LOS88_13445 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LOS88_13450 PF00361 Proton-conducting membrane transporter LOS88_13450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LOS88_13455 PF00361 Proton-conducting membrane transporter LOS88_13460 PF00361 Proton-conducting membrane transporter LOS88_13465 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LOS88_13465 PF02769 AIR synthase related protein, C-terminal domain LOS88_13465 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal LOS88_13470 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_13470 PF01464 Transglycosylase SLT domain LOS88_13475 PF07191 zinc-ribbons LOS88_13480 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LOS88_13480 PF01926 50S ribosome-binding GTPase LOS88_13485 PF13360 PQQ-like domain LOS88_13490 PF09976 Tetratricopeptide repeat-like domain LOS88_13495 PF03129 Anticodon binding domain LOS88_13495 PF13393 Histidyl-tRNA synthetase LOS88_13500 PF04551 GcpE protein LOS88_13505 PF13464 Domain of unknown function (DUF4115) LOS88_13515 PF04055 Radical SAM superfamily LOS88_13520 PF00334 Nucleoside diphosphate kinase LOS88_13525 PF12404 Peptidase LOS88_13525 PF00883 Cytosol aminopeptidase family, catalytic domain LOS88_13530 PF12404 Peptidase LOS88_13530 PF00883 Cytosol aminopeptidase family, catalytic domain LOS88_13535 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_13540 PF00012 Hsp70 protein LOS88_13545 PF00226 DnaJ domain LOS88_13545 PF07743 HSCB C-terminal oligomerisation domain LOS88_13550 PF01521 Iron-sulphur cluster biosynthesis LOS88_13555 PF01592 NifU-like N terminal domain LOS88_13560 PF00266 Aminotransferase class-V LOS88_13565 PF02082 Transcriptional regulator LOS88_13570 PF00588 SpoU rRNA Methylase family LOS88_13580 PF02036 SCP-2 sterol transfer family LOS88_13585 PF01136 Peptidase family U32 LOS88_13590 PF01136 Peptidase family U32 LOS88_13595 PF07719 Tetratricopeptide repeat LOS88_13595 PF13181 Tetratricopeptide repeat LOS88_13605 PF07549 SecD/SecF GG Motif LOS88_13605 PF02355 Protein export membrane protein LOS88_13610 PF07549 SecD/SecF GG Motif LOS88_13610 PF13721 SecD export protein N-terminal TM region LOS88_13610 PF02355 Protein export membrane protein LOS88_13615 PF02699 Preprotein translocase subunit LOS88_13620 PF01702 Queuine tRNA-ribosyltransferase LOS88_13625 PF02547 Queuosine biosynthesis protein LOS88_13630 PF00571 CBS domain LOS88_13640 PF00578 AhpC/TSA family LOS88_13640 PF10417 C-terminal domain of 1-Cys peroxiredoxin LOS88_13645 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_13645 PF13192 Thioredoxin domain LOS88_13700 PF00664 ABC transporter transmembrane region LOS88_13700 PF00005 ABC transporter LOS88_13700 PF03412 Peptidase C39 family LOS88_13705 PF04055 Radical SAM superfamily LOS88_13705 PF16199 Radical_SAM C-terminal domain LOS88_13710 PF00310 Glutamine amidotransferases class-II LOS88_13710 PF04898 Glutamate synthase central domain LOS88_13710 PF01645 Conserved region in glutamate synthase LOS88_13710 PF01493 GXGXG motif LOS88_13715 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_13715 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LOS88_13725 PF00270 DEAD/DEAH box helicase LOS88_13725 PF00271 Helicase conserved C-terminal domain LOS88_13740 PF07664 Ferrous iron transport protein B C terminus LOS88_13740 PF02421 Ferrous iron transport protein B LOS88_13740 PF07670 Nucleoside recognition LOS88_13750 PF01253 Translation initiation factor SUI1 LOS88_13755 PF01169 Uncharacterized protein family UPF0016 LOS88_13790 PF01609 Transposase DDE domain LOS88_13790 PF13808 DDE_Tnp_1-associated LOS88_13815 PF01406 tRNA synthetases class I (C) catalytic domain LOS88_13815 PF09190 DALR domain LOS88_13820 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LOS88_13830 PF00149 Calcineurin-like phosphoesterase LOS88_13840 PF04226 Transglycosylase associated protein LOS88_13845 PF08521 Two-component sensor kinase N-terminal LOS88_13845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_13845 PF00512 His Kinase A (phospho-acceptor) domain LOS88_13850 PF00072 Response regulator receiver domain LOS88_13850 PF00486 Transcriptional regulatory protein, C terminal LOS88_13865 PF01970 Tripartite tricarboxylate transporter TctA family LOS88_13880 PF13808 DDE_Tnp_1-associated LOS88_13880 PF01609 Transposase DDE domain LOS88_13885 PF13737 Transposase DDE domain LOS88_13895 PF08220 DeoR-like helix-turn-helix domain LOS88_13895 PF00455 DeoR C terminal sensor domain LOS88_13905 PF01695 IstB-like ATP binding protein LOS88_13910 PF00665 Integrase core domain LOS88_13910 PF02796 Helix-turn-helix domain of resolvase LOS88_13935 PF00936 BMC domain LOS88_13940 PF00936 BMC domain LOS88_13945 PF00936 BMC domain LOS88_13950 PF00465 Iron-containing alcohol dehydrogenase LOS88_13950 PF00171 Aldehyde dehydrogenase family LOS88_13960 PF00465 Iron-containing alcohol dehydrogenase LOS88_13960 PF00171 Aldehyde dehydrogenase family LOS88_13965 PF02901 Pyruvate formate lyase-like LOS88_13965 PF01228 Glycine radical LOS88_13985 PF01609 Transposase DDE domain LOS88_13985 PF13808 DDE_Tnp_1-associated LOS88_13995 PF00936 BMC domain LOS88_14000 PF06130 Phosphate propanoyltransferase LOS88_14010 PF00893 Small Multidrug Resistance protein LOS88_14015 PF00893 Small Multidrug Resistance protein LOS88_14045 PF01695 IstB-like ATP binding protein LOS88_14050 PF00665 Integrase core domain LOS88_14075 PF00589 Phage integrase family LOS88_14075 PF13356 Arm DNA-binding domain LOS88_14095 PF01066 CDP-alcohol phosphatidyltransferase LOS88_14100 PF02151 UvrB/uvrC motif LOS88_14100 PF08459 UvrC Helix-hairpin-helix N-terminal LOS88_14100 PF01541 GIY-YIG catalytic domain LOS88_14105 PF00072 Response regulator receiver domain LOS88_14105 PF00196 Bacterial regulatory proteins, luxR family LOS88_14110 PF02348 Cytidylyltransferase LOS88_14115 PF03966 Trm112p-like protein LOS88_14120 PF02606 Tetraacyldisaccharide-1-P 4'-kinase LOS88_14125 PF00664 ABC transporter transmembrane region LOS88_14125 PF00005 ABC transporter LOS88_14130 PF03772 Competence protein LOS88_14130 PF00753 Metallo-beta-lactamase superfamily LOS88_14145 PF00155 Aminotransferase class I and II LOS88_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_14155 PF03466 LysR substrate binding domain LOS88_14160 PF04219 Protein of unknown function, DUF LOS88_14165 PF03974 Ecotin LOS88_14170 PF03009 Glycerophosphoryl diester phosphodiesterase family LOS88_14175 PF01266 FAD dependent oxidoreductase LOS88_14175 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LOS88_14180 PF00455 DeoR C terminal sensor domain LOS88_14180 PF08220 DeoR-like helix-turn-helix domain LOS88_14190 PF00230 Major intrinsic protein LOS88_14195 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LOS88_14195 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LOS88_14200 PF02743 Cache domain LOS88_14200 PF00672 HAMP domain LOS88_14200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_14210 PF03466 LysR substrate binding domain LOS88_14210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_14235 PF07690 Major Facilitator Superfamily LOS88_14240 PF02525 Flavodoxin-like fold LOS88_14255 PF05114 Protein of unknown function (DUF692) LOS88_14275 PF02322 Cytochrome bd terminal oxidase subunit II LOS88_14280 PF01654 Cytochrome bd terminal oxidase subunit I LOS88_14285 PF00392 Bacterial regulatory proteins, gntR family LOS88_14285 PF00155 Aminotransferase class I and II LOS88_14295 PF04391 Protein of unknown function (DUF533) LOS88_14300 PF03061 Thioesterase superfamily LOS88_14305 PF10689 Protein of unknown function (DUF2496) LOS88_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_14310 PF03466 LysR substrate binding domain LOS88_14315 PF07690 Major Facilitator Superfamily LOS88_14320 PF01479 S4 domain LOS88_14320 PF00849 RNA pseudouridylate synthase LOS88_14330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LOS88_14340 PF00271 Helicase conserved C-terminal domain LOS88_14340 PF04851 Type III restriction enzyme, res subunit LOS88_14345 PF02508 Rnf-Nqr subunit, membrane protein LOS88_14350 PF04060 Putative Fe-S cluster LOS88_14355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit LOS88_14355 PF12838 4Fe-4S dicluster domain LOS88_14355 PF13375 RnfC Barrel sandwich hybrid domain LOS88_14355 PF10531 SLBB domain LOS88_14360 PF03116 NQR2, RnfD, RnfE family LOS88_14365 PF04205 FMN-binding domain LOS88_14370 PF02508 Rnf-Nqr subunit, membrane protein LOS88_14375 PF10576 Iron-sulfur binding domain of endonuclease III LOS88_14375 PF00633 Helix-hairpin-helix motif LOS88_14375 PF00730 HhH-GPD superfamily base excision DNA repair protein LOS88_14380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LOS88_14385 PF00691 OmpA family LOS88_14385 PF18393 MotY N-terminal domain LOS88_14420 PF13609 Gram-negative porin LOS88_14425 PF13307 Helicase C-terminal domain LOS88_14425 PF06733 DEAD_2 LOS88_14435 PF00850 Histone deacetylase domain LOS88_14440 PF01926 50S ribosome-binding GTPase LOS88_14445 PF00245 Alkaline phosphatase LOS88_14450 PF00245 Alkaline phosphatase LOS88_14465 PF14760 Rnk N-terminus LOS88_14465 PF01272 Transcription elongation factor, GreA/GreB, C-term LOS88_14470 PF00196 Bacterial regulatory proteins, luxR family LOS88_14470 PF00072 Response regulator receiver domain LOS88_14475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_14475 PF07730 Histidine kinase LOS88_14475 PF05231 MASE1 LOS88_14480 PF07690 Major Facilitator Superfamily LOS88_14485 PF00990 Diguanylate cyclase, GGDEF domain LOS88_14485 PF08448 PAS fold LOS88_14490 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_14495 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_14500 PF00005 ABC transporter LOS88_14510 PF04116 Fatty acid hydroxylase superfamily LOS88_14515 PF13520 Amino acid permease LOS88_14520 PF02607 B12 binding domain LOS88_14520 PF02965 Vitamin B12 dependent methionine synthase, activation domain LOS88_14520 PF00809 Pterin binding enzyme LOS88_14520 PF02574 Homocysteine S-methyltransferase LOS88_14520 PF02310 B12 binding domain LOS88_14530 PF00571 CBS domain LOS88_14530 PF03471 Transporter associated domain LOS88_14530 PF01595 Cyclin M transmembrane N-terminal domain LOS88_14535 PF01895 PhoU domain LOS88_14540 PF00005 ABC transporter LOS88_14545 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_14550 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_14555 PF14437 MafB19-like deaminase LOS88_14570 PF01274 Malate synthase LOS88_14575 PF00463 Isocitrate lyase family LOS88_14580 PF00308 Bacterial dnaA protein LOS88_14595 PF00586 AIR synthase related protein, N-terminal domain LOS88_14595 PF02769 AIR synthase related protein, C-terminal domain LOS88_14600 PF00551 Formyl transferase LOS88_14605 PF01784 NIF3 (NGG1p interacting factor 3) LOS88_14610 PF00158 Sigma-54 interaction domain LOS88_14610 PF00072 Response regulator receiver domain LOS88_14610 PF02954 Bacterial regulatory protein, Fis family LOS88_14615 PF13188 PAS domain LOS88_14615 PF00512 His Kinase A (phospho-acceptor) domain LOS88_14615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_14620 PF00158 Sigma-54 interaction domain LOS88_14620 PF02954 Bacterial regulatory protein, Fis family LOS88_14620 PF06490 Flagellar regulatory protein FleQ LOS88_14630 PF01842 ACT domain LOS88_14635 PF17941 Polyphosphate kinase C-terminal domain 1 LOS88_14635 PF13090 Polyphosphate kinase C-terminal domain 2 LOS88_14635 PF02503 Polyphosphate kinase middle domain LOS88_14635 PF13089 Polyphosphate kinase N-terminal domain LOS88_14640 PF02541 Ppx/GppA phosphatase family LOS88_14645 PF03448 MgtE intracellular N domain LOS88_14645 PF01769 Divalent cation transporter LOS88_14645 PF00571 CBS domain LOS88_14650 PF00669 Bacterial flagellin N-terminal helical region LOS88_14655 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LOS88_14655 PF07196 Flagellin hook IN motif LOS88_14660 PF10135 Rod binding protein LOS88_14660 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LOS88_14665 PF02119 Flagellar P-ring protein LOS88_14670 PF02107 Flagellar L-ring protein LOS88_14675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LOS88_14675 PF00460 Flagella basal body rod protein LOS88_14680 PF00460 Flagella basal body rod protein LOS88_14680 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LOS88_14685 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LOS88_14685 PF00460 Flagella basal body rod protein LOS88_14685 PF07559 Flagellar basal body protein FlaE LOS88_14690 PF03963 Flagellar hook capping protein - N-terminal region LOS88_14690 PF13860 FlgD Ig-like domain LOS88_14690 PF13861 FlgD Tudor-like domain LOS88_14695 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LOS88_14695 PF00460 Flagella basal body rod protein LOS88_14700 PF00460 Flagella basal body rod protein LOS88_14705 PF03705 CheR methyltransferase, all-alpha domain LOS88_14705 PF01739 CheR methyltransferase, SAM binding domain LOS88_14710 PF01584 CheW-like domain LOS88_14710 PF00072 Response regulator receiver domain LOS88_14715 PF13144 Chaperone for flagella basal body P-ring formation LOS88_14730 PF12850 Calcineurin-like phosphoesterase superfamily domain LOS88_14735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_14745 PF01479 S4 domain LOS88_14745 PF00849 RNA pseudouridylate synthase LOS88_14750 PF01966 HD domain LOS88_14760 PF00923 Transaldolase/Fructose-6-phosphate aldolase LOS88_14765 PF04055 Radical SAM superfamily LOS88_14770 PF01228 Glycine radical LOS88_14770 PF02901 Pyruvate formate lyase-like LOS88_14775 PF00455 DeoR C terminal sensor domain LOS88_14775 PF08220 DeoR-like helix-turn-helix domain LOS88_14780 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_14805 PF00313 'Cold-shock' DNA-binding domain LOS88_14810 PF02817 e3 binding domain LOS88_14810 PF00364 Biotin-requiring enzyme LOS88_14810 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LOS88_14815 PF02779 Transketolase, pyrimidine binding domain LOS88_14815 PF02780 Transketolase, C-terminal domain LOS88_14820 PF00676 Dehydrogenase E1 component LOS88_14830 PF00501 AMP-binding enzyme LOS88_14830 PF00668 Condensation domain LOS88_14830 PF00550 Phosphopantetheine attachment site LOS88_14830 PF00975 Thioesterase domain LOS88_14840 PF00550 Phosphopantetheine attachment site LOS88_14840 PF00857 Isochorismatase family LOS88_14845 PF13193 AMP-binding enzyme C-terminal domain LOS88_14845 PF00501 AMP-binding enzyme LOS88_14850 PF00425 chorismate binding enzyme LOS88_14855 PF00593 TonB dependent receptor LOS88_14855 PF07715 TonB-dependent Receptor Plug Domain LOS88_14860 PF00793 DAHP synthetase I family LOS88_14865 PF00356 Bacterial regulatory proteins, lacI family LOS88_14870 PF14718 Soluble lytic murein transglycosylase L domain LOS88_14870 PF01464 Transglycosylase SLT domain LOS88_14875 PF03707 Bacterial signalling protein N terminal repeat LOS88_14875 PF00563 EAL domain LOS88_14875 PF00990 Diguanylate cyclase, GGDEF domain LOS88_14880 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LOS88_14900 PF04357 TamB, inner membrane protein subunit of TAM complex LOS88_14905 PF07244 Surface antigen variable number repeat LOS88_14905 PF17243 POTRA domain TamA domain 1 LOS88_14905 PF01103 Surface antigen LOS88_14925 PF02627 Carboxymuconolactone decarboxylase family LOS88_14930 PF00403 Heavy-metal-associated domain LOS88_14930 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_14930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_14935 PF13416 Bacterial extracellular solute-binding protein LOS88_14945 PF00005 ABC transporter LOS88_14950 PF01066 CDP-alcohol phosphatidyltransferase LOS88_14955 PF13406 Transglycosylase SLT domain LOS88_14960 PF01047 MarR family LOS88_14970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LOS88_14970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LOS88_14970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LOS88_14970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LOS88_14975 PF03925 SeqA protein C-terminal domain LOS88_14975 PF17206 SeqA protein N-terminal domain LOS88_14980 PF12697 Alpha/beta hydrolase family LOS88_14990 PF01402 Ribbon-helix-helix protein, copG family LOS88_14995 PF00258 Flavodoxin LOS88_15005 PF01475 Ferric uptake regulator family LOS88_15010 PF00749 tRNA synthetases class I (E and Q), catalytic domain LOS88_15010 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LOS88_15015 PF03173 Putative carbohydrate binding domain LOS88_15015 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain LOS88_15015 PF00728 Glycosyl hydrolase family 20, catalytic domain LOS88_15015 PF02838 Glycosyl hydrolase family 20, domain 2 LOS88_15020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LOS88_15020 PF00367 phosphotransferase system, EIIB LOS88_15020 PF02378 Phosphotransferase system, EIIC LOS88_15025 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LOS88_15030 PF01979 Amidohydrolase family LOS88_15035 PF01047 MarR family LOS88_15035 PF00480 ROK family LOS88_15040 PF00884 Sulfatase LOS88_15040 PF08019 Phosphoethanolamine transferase EptA/EptB LOS88_15045 PF01966 HD domain LOS88_15050 PF07694 5TMR of 5TMR-LYT LOS88_15050 PF06580 Histidine kinase LOS88_15055 PF04397 LytTr DNA-binding domain LOS88_15055 PF00072 Response regulator receiver domain LOS88_15060 PF02554 Carbon starvation protein CstA LOS88_15065 PF11742 Protein of unknown function (DUF3302) LOS88_15070 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_15070 PF00529 HlyD membrane-fusion protein of T1SS LOS88_15075 PF04851 Type III restriction enzyme, res subunit LOS88_15075 PF00271 Helicase conserved C-terminal domain LOS88_15080 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LOS88_15085 PF00462 Glutaredoxin LOS88_15090 PF03372 Endonuclease/Exonuclease/phosphatase family LOS88_15100 PF03061 Thioesterase superfamily LOS88_15105 PF01370 NAD dependent epimerase/dehydratase family LOS88_15135 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_15135 PF10371 Domain of unknown function LOS88_15135 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LOS88_15135 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LOS88_15135 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LOS88_15140 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region LOS88_15140 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster LOS88_15140 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_15155 PF03473 MOSC domain LOS88_15155 PF03476 MOSC N-terminal beta barrel domain LOS88_15155 PF03473 MOSC domain LOS88_15155 PF03476 MOSC N-terminal beta barrel domain LOS88_15155 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_15155 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_15160 PF13426 PAS domain LOS88_15160 PF08447 PAS fold LOS88_15160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_15165 PF01435 Peptidase family M48 LOS88_15175 PF08241 Methyltransferase domain LOS88_15180 PF00155 Aminotransferase class I and II LOS88_15185 PF04055 Radical SAM superfamily LOS88_15185 PF06968 Biotin and Thiamin Synthesis associated domain LOS88_15190 PF00202 Aminotransferase class-III LOS88_15205 PF01336 OB-fold nucleic acid binding domain LOS88_15205 PF00152 tRNA synthetases class II (D, K and N) LOS88_15215 PF03605 Anaerobic c4-dicarboxylate membrane transporter LOS88_15225 PF01546 Peptidase family M20/M25/M40 LOS88_15225 PF07687 Peptidase dimerisation domain LOS88_15230 PF03606 C4-dicarboxylate anaerobic carrier LOS88_15240 PF03960 ArsC family LOS88_15245 PF01546 Peptidase family M20/M25/M40 LOS88_15245 PF07687 Peptidase dimerisation domain LOS88_15250 PF02557 D-alanyl-D-alanine carboxypeptidase LOS88_15260 PF03471 Transporter associated domain LOS88_15260 PF00999 Sodium/hydrogen exchanger family LOS88_15260 PF02080 TrkA-C domain LOS88_15275 PF01810 LysE type translocator LOS88_15280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_15280 PF00672 HAMP domain LOS88_15280 PF12729 Four helix bundle sensory module for signal transduction LOS88_15285 PF07509 Protein of unknown function (DUF1523) LOS88_15300 PF01156 Inosine-uridine preferring nucleoside hydrolase LOS88_15305 PF00849 RNA pseudouridylate synthase LOS88_15310 PF01048 Phosphorylase superfamily LOS88_15380 PF10124 Mu-like prophage major head subunit gpT LOS88_15385 PF10123 Mu-like prophage I protein LOS88_15405 PF06074 Protein of unknown function (DUF935) LOS88_15410 PF03237 Terminase-like family LOS88_15415 PF11985 Protein of unknown function (DUF3486) LOS88_15420 PF08461 Ribonuclease R winged-helix domain LOS88_15545 PF04355 SmpA / OmlA family LOS88_15550 PF13460 NAD(P)H-binding LOS88_15560 PF10437 Bacterial lipoate protein ligase C-terminus LOS88_15560 PF03099 Biotin/lipoate A/B protein ligase family LOS88_15565 PF03707 Bacterial signalling protein N terminal repeat LOS88_15565 PF00563 EAL domain LOS88_15565 PF00990 Diguanylate cyclase, GGDEF domain LOS88_15570 PF00005 ABC transporter LOS88_15570 PF02687 FtsX-like permease family LOS88_15570 PF12704 MacB-like periplasmic core domain LOS88_15575 PF12704 MacB-like periplasmic core domain LOS88_15575 PF02687 FtsX-like permease family LOS88_15575 PF00005 ABC transporter LOS88_15580 PF12704 MacB-like periplasmic core domain LOS88_15580 PF02687 FtsX-like permease family LOS88_15580 PF00005 ABC transporter LOS88_15585 PF00529 HlyD membrane-fusion protein of T1SS LOS88_15585 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_15590 PF00873 AcrB/AcrD/AcrF family LOS88_15605 PF04143 Sulphur transport LOS88_15625 PF02308 MgtC family LOS88_15630 PF13407 Periplasmic binding protein domain LOS88_15630 PF00356 Bacterial regulatory proteins, lacI family LOS88_15635 PF00251 Glycosyl hydrolases family 32 N-terminal domain LOS88_15635 PF08244 Glycosyl hydrolases family 32 C terminal LOS88_15640 PF00367 phosphotransferase system, EIIB LOS88_15640 PF02378 Phosphotransferase system, EIIC LOS88_15645 PF00294 pfkB family carbohydrate kinase LOS88_15650 PF02264 LamB porin LOS88_15650 PF11471 Maltoporin periplasmic N-terminal extension LOS88_15655 PF01556 DnaJ C terminal domain LOS88_15655 PF00684 DnaJ central domain LOS88_15655 PF00226 DnaJ domain LOS88_15660 PF00012 Hsp70 protein LOS88_15665 PF01025 GrpE LOS88_15670 PF01513 ATP-NAD kinase LOS88_15675 PF02463 RecF/RecN/SMC N terminal domain LOS88_15680 PF01368 DHH family LOS88_15680 PF02833 DHHA2 domain LOS88_15685 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_15690 PF00005 ABC transporter LOS88_15690 PF12704 MacB-like periplasmic core domain LOS88_15690 PF02687 FtsX-like permease family LOS88_15695 PF02321 Outer membrane efflux protein LOS88_15705 PF13808 DDE_Tnp_1-associated LOS88_15705 PF01609 Transposase DDE domain LOS88_15710 PF13592 Winged helix-turn helix LOS88_15710 PF13358 DDE superfamily endonuclease LOS88_15720 PF00816 H-NS histone family LOS88_15725 PF01695 IstB-like ATP binding protein LOS88_15750 PF13808 DDE_Tnp_1-associated LOS88_15750 PF01609 Transposase DDE domain LOS88_15770 PF02397 Bacterial sugar transferase LOS88_15780 PF00534 Glycosyl transferases group 1 LOS88_15780 PF13439 Glycosyltransferase Family 4 LOS88_15785 PF00534 Glycosyl transferases group 1 LOS88_15785 PF13439 Glycosyltransferase Family 4 LOS88_15790 PF00535 Glycosyl transferase family 2 LOS88_15830 PF13276 HTH-like domain LOS88_15830 PF00665 Integrase core domain LOS88_15830 PF13333 Integrase core domain LOS88_15845 PF02719 Polysaccharide biosynthesis protein LOS88_15850 PF00953 Glycosyl transferase family 4 LOS88_15855 PF01370 NAD dependent epimerase/dehydratase family LOS88_15875 PF05045 Rhamnan synthesis protein F LOS88_15875 PF14307 Glycosyltransferase WbsX LOS88_15885 PF00005 ABC transporter LOS88_15890 PF01061 ABC-2 type transporter LOS88_15895 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LOS88_15900 PF00483 Nucleotidyl transferase LOS88_15905 PF04321 RmlD substrate binding domain LOS88_15910 PF16363 GDP-mannose 4,6 dehydratase LOS88_15915 PF00873 AcrB/AcrD/AcrF family LOS88_15920 PF00529 HlyD membrane-fusion protein of T1SS LOS88_15920 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_15925 PF08361 MAATS-type transcriptional repressor, C-terminal region LOS88_15925 PF00440 Bacterial regulatory proteins, tetR family LOS88_15940 PF02001 Protein of unknown function DUF134 LOS88_15955 PF00072 Response regulator receiver domain LOS88_15960 PF18693 TRAM domain LOS88_15960 PF00919 Uncharacterized protein family UPF0004 LOS88_15960 PF04055 Radical SAM superfamily LOS88_15975 PF01048 Phosphorylase superfamily LOS88_16000 PF00210 Ferritin-like domain LOS88_16030 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_16030 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_16030 PF02378 Phosphotransferase system, EIIC LOS88_16035 PF07690 Major Facilitator Superfamily LOS88_16040 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_16050 PF00849 RNA pseudouridylate synthase LOS88_16055 PF00293 NUDIX domain LOS88_16065 PF04356 Protein of unknown function (DUF489) LOS88_16070 PF08328 Adenylosuccinate lyase C-terminal LOS88_16070 PF00206 Lyase LOS88_16075 PF08007 Cupin superfamily protein LOS88_16095 PF13417 Glutathione S-transferase, N-terminal domain LOS88_16100 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region LOS88_16100 PF01243 Pyridoxamine 5'-phosphate oxidase LOS88_16125 PF01029 NusB family LOS88_16125 PF01189 16S rRNA methyltransferase RsmB/F LOS88_16130 PF01042 Endoribonuclease L-PSP LOS88_16135 PF01228 Glycine radical LOS88_16135 PF02901 Pyruvate formate lyase-like LOS88_16140 PF00871 Acetokinase family LOS88_16145 PF03222 Tryptophan/tyrosine permease family LOS88_16150 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_16155 PF00462 Glutaredoxin LOS88_16160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LOS88_16160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LOS88_16165 PF04333 MlaA lipoprotein LOS88_16175 PF03918 Cytochrome C biogenesis protein LOS88_16180 PF08534 Redoxin LOS88_16185 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal LOS88_16185 PF01578 Cytochrome C assembly protein LOS88_16190 PF03100 CcmE LOS88_16195 PF04995 Heme exporter protein D (CcmD) LOS88_16200 PF01578 Cytochrome C assembly protein LOS88_16205 PF03379 CcmB protein LOS88_16210 PF00005 ABC transporter LOS88_16220 PF01584 CheW-like domain LOS88_16230 PF13614 AAA domain LOS88_16235 PF13677 Membrane MotB of proton-channel complex MotA/MotB LOS88_16235 PF00691 OmpA family LOS88_16240 PF01618 MotA/TolQ/ExbB proton channel family LOS88_16245 PF01339 CheB methylesterase LOS88_16245 PF00072 Response regulator receiver domain LOS88_16250 PF00072 Response regulator receiver domain LOS88_16250 PF01627 Hpt domain LOS88_16250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_16250 PF01584 CheW-like domain LOS88_16250 PF02895 Signal transducing histidine kinase, homodimeric domain LOS88_16255 PF04344 Chemotaxis phosphatase, CheZ LOS88_16260 PF00072 Response regulator receiver domain LOS88_16265 PF04539 Sigma-70 region 3 LOS88_16265 PF04542 Sigma-70 region 2 LOS88_16265 PF04545 Sigma-70, region 4 LOS88_16270 PF10609 NUBPL iron-transfer P-loop NTPase LOS88_16275 PF00448 SRP54-type protein, GTPase domain LOS88_16280 PF00771 FHIPEP family LOS88_16285 PF01312 FlhB HrpN YscU SpaS Family LOS88_16290 PF01311 Bacterial export proteins, family 1 LOS88_16295 PF01313 Bacterial export proteins, family 3 LOS88_16300 PF00813 FliP family LOS88_16305 PF04347 Flagellar biosynthesis protein, FliO LOS88_16310 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LOS88_16315 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LOS88_16315 PF02154 Flagellar motor switch protein FliM LOS88_16335 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LOS88_16335 PF18269 T3SS EscN ATPase C-terminal domain LOS88_16345 PF01706 FliG C-terminal domain LOS88_16345 PF14842 FliG N-terminal domain LOS88_16345 PF14841 FliG middle domain LOS88_16350 PF01514 Secretory protein of YscJ/FliF family LOS88_16350 PF08345 Flagellar M-ring protein C-terminal LOS88_16355 PF02049 Flagellar hook-basal body complex protein FliE LOS88_16375 PF00224 Pyruvate kinase, barrel domain LOS88_16375 PF02887 Pyruvate kinase, alpha/beta domain LOS88_16380 PF01418 Helix-turn-helix domain, rpiR family LOS88_16380 PF01380 SIS domain LOS88_16385 PF02685 Glucokinase LOS88_16410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_16410 PF00672 HAMP domain LOS88_16415 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_16420 PF00860 Permease family LOS88_16430 PF16998 17 kDa outer membrane surface antigen LOS88_16430 PF05433 Glycine zipper 2TM domain LOS88_16435 PF00390 Malic enzyme, N-terminal domain LOS88_16435 PF03949 Malic enzyme, NAD binding domain LOS88_16455 PF13247 4Fe-4S dicluster domain LOS88_16460 PF12838 4Fe-4S dicluster domain LOS88_16460 PF01568 Molydopterin dinucleotide binding domain LOS88_16460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LOS88_16460 PF12838 4Fe-4S dicluster domain LOS88_16460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LOS88_16460 PF00384 Molybdopterin oxidoreductase LOS88_16460 PF01568 Molydopterin dinucleotide binding domain LOS88_16460 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LOS88_16460 PF00384 Molybdopterin oxidoreductase LOS88_16460 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LOS88_16495 PF02634 FdhD/NarQ family LOS88_16505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_16505 PF00512 His Kinase A (phospho-acceptor) domain LOS88_16505 PF00989 PAS fold LOS88_16510 PF00158 Sigma-54 interaction domain LOS88_16510 PF02954 Bacterial regulatory protein, Fis family LOS88_16510 PF00072 Response regulator receiver domain LOS88_16515 PF12849 PBP superfamily domain LOS88_16520 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_16525 PF00005 ABC transporter LOS88_16530 PF12804 MobA-like NTP transferase domain LOS88_16535 PF03454 MoeA C-terminal region (domain IV) LOS88_16535 PF00994 Probable molybdopterin binding domain LOS88_16535 PF03453 MoeA N-terminal region (domain I and II) LOS88_16540 PF04632 Fusaric acid resistance protein family LOS88_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_16555 PF08447 PAS fold LOS88_16555 PF13426 PAS domain LOS88_16575 PF05114 Protein of unknown function (DUF692) LOS88_16585 PF10725 Protein of unknown function (DUF2517) LOS88_16605 PF00072 Response regulator receiver domain LOS88_16605 PF09308 LuxQ, periplasmic LOS88_16605 PF00512 His Kinase A (phospho-acceptor) domain LOS88_16605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_16610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_16615 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_16620 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_16620 PF12911 N-terminal TM domain of oligopeptide transport permease C LOS88_16625 PF00005 ABC transporter LOS88_16625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_16630 PF00005 ABC transporter LOS88_16630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_16640 PF01869 BadF/BadG/BcrA/BcrD ATPase family LOS88_16645 PF00728 Glycosyl hydrolase family 20, catalytic domain LOS88_16645 PF02838 Glycosyl hydrolase family 20, domain 2 LOS88_16650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_16650 PF08447 PAS fold LOS88_16665 PF01396 Topoisomerase DNA binding C4 zinc finger LOS88_16665 PF01751 Toprim domain LOS88_16665 PF08272 Topoisomerase I zinc-ribbon-like LOS88_16665 PF01131 DNA topoisomerase LOS88_16670 PF04996 Succinylarginine dihydrolase LOS88_16695 PF01627 Hpt domain LOS88_16695 PF00672 HAMP domain LOS88_16695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_16695 PF00512 His Kinase A (phospho-acceptor) domain LOS88_16695 PF00072 Response regulator receiver domain LOS88_16695 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) LOS88_16700 PF00196 Bacterial regulatory proteins, luxR family LOS88_16700 PF00072 Response regulator receiver domain LOS88_16710 PF08446 PAS fold LOS88_16710 PF00360 Phytochrome region LOS88_16710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_16710 PF01590 GAF domain LOS88_16710 PF00512 His Kinase A (phospho-acceptor) domain LOS88_16730 PF13737 Transposase DDE domain LOS88_16735 PF00990 Diguanylate cyclase, GGDEF domain LOS88_16735 PF05230 MASE2 domain LOS88_16740 PF01609 Transposase DDE domain LOS88_16740 PF13808 DDE_Tnp_1-associated LOS88_16745 PF01609 Transposase DDE domain LOS88_16755 PF13808 DDE_Tnp_1-associated LOS88_16755 PF01609 Transposase DDE domain LOS88_16760 PF01609 Transposase DDE domain LOS88_16780 PF13580 SIS domain LOS88_16785 PF03613 PTS system mannose/fructose/sorbose family IID component LOS88_16790 PF03609 PTS system sorbose-specific iic component LOS88_16795 PF03830 PTS system sorbose subfamily IIB component LOS88_16800 PF01116 Fructose-bisphosphate aldolase class-II LOS88_16805 PF01979 Amidohydrolase family LOS88_16810 PF03610 PTS system fructose IIA component LOS88_16815 PF01380 SIS domain LOS88_16820 PF08013 Tagatose 6 phosphate kinase LOS88_16825 PF00455 DeoR C terminal sensor domain LOS88_16825 PF08220 DeoR-like helix-turn-helix domain LOS88_16835 PF00083 Sugar (and other) transporter LOS88_16840 PF17128 Domain of unknown function (DUF5107) LOS88_16840 PF13181 Tetratricopeptide repeat LOS88_16845 PF00480 ROK family LOS88_16860 PF00440 Bacterial regulatory proteins, tetR family LOS88_16865 PF09317 Domain of unknown function (DUF1974) LOS88_16865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LOS88_16865 PF02770 Acyl-CoA dehydrogenase, middle domain LOS88_16865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LOS88_16870 PF00873 AcrB/AcrD/AcrF family LOS88_16880 PF02075 Crossover junction endodeoxyribonuclease RuvC LOS88_16885 PF02108 Flagellar assembly protein FliH LOS88_16890 PF06578 YOP proteins translocation protein K (YscK) LOS88_16895 PF01514 Secretory protein of YscJ/FliF family LOS88_16900 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI LOS88_16910 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) LOS88_16915 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF LOS88_16925 PF16693 Inner membrane component of T3SS, periplasmic domain LOS88_16925 PF16697 Inner membrane component of T3SS, cytoplasmic domain LOS88_16930 PF00263 Bacterial type II and III secretion system protein LOS88_16930 PF03958 Bacterial type II/III secretion system short domain LOS88_16935 PF05932 Tir chaperone protein (CesT) family LOS88_16940 PF16806 Antiactivator protein ExsD LOS88_16950 PF01609 Transposase DDE domain LOS88_16950 PF13808 DDE_Tnp_1-associated LOS88_16955 PF12833 Helix-turn-helix domain LOS88_16965 PF09619 Type III secretion system lipoprotein chaperone (YscW) LOS88_16975 PF05932 Tir chaperone protein (CesT) family LOS88_16980 PF05844 YopD protein LOS88_16985 PF04888 Secretion system effector C (SseC) like family LOS88_16990 PF07720 Tetratricopeptide repeat LOS88_16995 PF04792 V antigen (LcrV) protein LOS88_17000 PF07216 LcrG protein LOS88_17005 PF09621 Type III secretion system regulator (LcrR) LOS88_17010 PF00771 FHIPEP family LOS88_17020 PF09474 Type III secretion system YscX (type_III_YscX) LOS88_17030 PF09059 TyeA LOS88_17035 PF07201 HrpJ-like domain LOS88_17040 PF02874 ATP synthase alpha/beta family, beta-barrel domain LOS88_17040 PF18269 T3SS EscN ATPase C-terminal domain LOS88_17040 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LOS88_17050 PF02120 Flagellar hook-length control protein FliK LOS88_17055 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LOS88_17060 PF00813 FliP family LOS88_17065 PF01313 Bacterial export proteins, family 3 LOS88_17070 PF01311 Bacterial export proteins, family 1 LOS88_17075 PF01312 FlhB HrpN YscU SpaS Family LOS88_17080 PF03496 ADP-ribosyltransferase exoenzyme LOS88_17100 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LOS88_17100 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_17105 PF13411 MerR HTH family regulatory protein LOS88_17120 PF00665 Integrase core domain LOS88_17120 PF02796 Helix-turn-helix domain of resolvase LOS88_17125 PF01695 IstB-like ATP binding protein LOS88_17135 PF14821 Threonine synthase N terminus LOS88_17135 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_17140 PF08544 GHMP kinases C terminal LOS88_17140 PF00288 GHMP kinases N terminal domain LOS88_17145 PF00742 Homoserine dehydrogenase LOS88_17145 PF13840 ACT domain LOS88_17145 PF01842 ACT domain LOS88_17145 PF00696 Amino acid kinase family LOS88_17145 PF03447 Homoserine dehydrogenase, NAD binding domain LOS88_17150 PF00588 SpoU rRNA Methylase family LOS88_17155 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) LOS88_17170 PF01479 S4 domain LOS88_17170 PF00849 RNA pseudouridylate synthase LOS88_17175 PF04079 Segregation and condensation complex subunit ScpB LOS88_17180 PF02616 Segregation and condensation protein ScpA LOS88_17185 PF01300 Telomere recombination LOS88_17190 PF02811 PHP domain LOS88_17195 PF04715 Anthranilate synthase component I, N terminal region LOS88_17195 PF00425 chorismate binding enzyme LOS88_17200 PF00117 Glutamine amidotransferase class-I LOS88_17200 PF02885 Glycosyl transferase family, helical bundle domain LOS88_17200 PF00591 Glycosyl transferase family, a/b domain LOS88_17205 PF00591 Glycosyl transferase family, a/b domain LOS88_17205 PF02885 Glycosyl transferase family, helical bundle domain LOS88_17210 PF00218 Indole-3-glycerol phosphate synthase LOS88_17210 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LOS88_17215 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_17220 PF00290 Tryptophan synthase alpha chain LOS88_17240 PF04307 LexA-binding, inner membrane-associated putative hydrolase LOS88_17260 PF07670 Nucleoside recognition LOS88_17260 PF07662 Na+ dependent nucleoside transporter C-terminus LOS88_17260 PF01773 Na+ dependent nucleoside transporter N-terminus LOS88_17265 PF03960 ArsC family LOS88_17270 PF01758 Sodium Bile acid symporter family LOS88_17275 PF02374 Anion-transporting ATPase LOS88_17280 PF06953 Arsenical resistance operon trans-acting repressor ArsD LOS88_17300 PF03737 Aldolase/RraA LOS88_17310 PF00072 Response regulator receiver domain LOS88_17310 PF00486 Transcriptional regulatory protein, C terminal LOS88_17325 PF00664 ABC transporter transmembrane region LOS88_17325 PF00005 ABC transporter LOS88_17330 PF00664 ABC transporter transmembrane region LOS88_17330 PF00005 ABC transporter LOS88_17350 PF01980 tRNA-methyltransferase O LOS88_17350 PF18389 TrmO C-terminal domain LOS88_17355 PF01292 Prokaryotic cytochrome b561 LOS88_17365 PF00072 Response regulator receiver domain LOS88_17365 PF00486 Transcriptional regulatory protein, C terminal LOS88_17370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_17375 PF03350 Uncharacterized protein family, UPF0114 LOS88_17390 PF01266 FAD dependent oxidoreductase LOS88_17395 PF01381 Helix-turn-helix LOS88_17395 PF07883 Cupin domain LOS88_17400 PF00171 Aldehyde dehydrogenase family LOS88_17405 PF00202 Aminotransferase class-III LOS88_17410 PF00324 Amino acid permease LOS88_17420 PF00324 Amino acid permease LOS88_17425 PF02690 Na+/Pi-cotransporter LOS88_17430 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_17430 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LOS88_17440 PF04381 Putative exonuclease, RdgC LOS88_17450 PF00149 Calcineurin-like phosphoesterase LOS88_17450 PF12320 Type 5 capsule protein repressor C-terminal domain LOS88_17455 PF13476 AAA domain LOS88_17460 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LOS88_17470 PF00224 Pyruvate kinase, barrel domain LOS88_17470 PF02887 Pyruvate kinase, alpha/beta domain LOS88_17475 PF00924 Mechanosensitive ion channel LOS88_17475 PF12795 Mechanosensitive ion channel porin domain LOS88_17475 PF12794 Mechanosensitive ion channel inner membrane domain 1 LOS88_17485 PF01431 Peptidase family M13 LOS88_17485 PF05649 Peptidase family M13 LOS88_17490 PF00990 Diguanylate cyclase, GGDEF domain LOS88_17495 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LOS88_17500 PF05524 PEP-utilising enzyme, N-terminal LOS88_17500 PF00391 PEP-utilising enzyme, mobile domain LOS88_17500 PF02896 PEP-utilising enzyme, TIM barrel domain LOS88_17505 PF00381 PTS HPr component phosphorylation site LOS88_17510 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_17515 PF17862 AAA+ lid domain LOS88_17515 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_17515 PF01434 Peptidase family M41 LOS88_17525 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LOS88_17525 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LOS88_17530 PF00672 HAMP domain LOS88_17530 PF01966 HD domain LOS88_17535 PF01471 Putative peptidoglycan binding domain LOS88_17535 PF13401 AAA domain LOS88_17540 PF16537 Type II secretion system protein B LOS88_17545 PF11356 Type II secretion system protein C LOS88_17550 PF00263 Bacterial type II and III secretion system protein LOS88_17550 PF03958 Bacterial type II/III secretion system short domain LOS88_17555 PF00437 Type II/IV secretion system protein LOS88_17560 PF00482 Type II secretion system (T2SS), protein F LOS88_17565 PF08334 Type II secretion system (T2SS), protein G LOS88_17565 PF07963 Prokaryotic N-terminal methylation motif LOS88_17570 PF07963 Prokaryotic N-terminal methylation motif LOS88_17570 PF12019 Type II transport protein GspH LOS88_17575 PF07963 Prokaryotic N-terminal methylation motif LOS88_17575 PF02501 Type II secretion system (T2SS), protein I LOS88_17585 PF03934 Type II secretion system (T2SS), protein K LOS88_17590 PF12693 GspL periplasmic domain LOS88_17590 PF05134 Type II secretion system (T2SS), protein L LOS88_17595 PF04612 Type II secretion system (T2SS), protein M LOS88_17600 PF01203 Type II secretion system (T2SS), protein N LOS88_17605 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LOS88_17610 PF02378 Phosphotransferase system, EIIC LOS88_17615 PF00232 Glycosyl hydrolase family 1 LOS88_17620 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LOS88_17625 PF07883 Cupin domain LOS88_17625 PF12833 Helix-turn-helix domain LOS88_17630 PF02056 Family 4 glycosyl hydrolase LOS88_17630 PF11975 Family 4 glycosyl hydrolase C-terminal domain LOS88_17635 PF04794 YdjC-like protein LOS88_17645 PF01027 Inhibitor of apoptosis-promoting Bax1 LOS88_17650 PF12805 FUSC-like inner membrane protein yccS LOS88_17655 PF04358 DsrC like protein LOS88_17660 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LOS88_17665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_17665 PF03466 LysR substrate binding domain LOS88_17715 PF11842 Domain of unknown function (DUF3362) LOS88_17715 PF04055 Radical SAM superfamily LOS88_17715 PF08497 Radical SAM N-terminal LOS88_17720 PF00873 AcrB/AcrD/AcrF family LOS88_17725 PF00529 HlyD membrane-fusion protein of T1SS LOS88_17725 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_17730 PF17158 Membrane-associated sensor, integral membrane domain LOS88_17730 PF00990 Diguanylate cyclase, GGDEF domain LOS88_17735 PF01734 Patatin-like phospholipase LOS88_17740 PF13520 Amino acid permease LOS88_17750 PF13520 Amino acid permease LOS88_17765 PF00691 OmpA family LOS88_17765 PF01389 OmpA-like transmembrane domain LOS88_17785 PF00691 OmpA family LOS88_17785 PF01389 OmpA-like transmembrane domain LOS88_17790 PF00390 Malic enzyme, N-terminal domain LOS88_17790 PF03949 Malic enzyme, NAD binding domain LOS88_17795 PF12833 Helix-turn-helix domain LOS88_17800 PF01554 MatE LOS88_17805 PF10692 Protein of unknown function (DUF2498) LOS88_17810 PF00990 Diguanylate cyclase, GGDEF domain LOS88_17815 PF00860 Permease family LOS88_17825 PF01235 Sodium:alanine symporter family LOS88_17830 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LOS88_17830 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LOS88_17835 PF01699 Sodium/calcium exchanger protein LOS88_17840 PF08534 Redoxin LOS88_17850 PF00293 NUDIX domain LOS88_17865 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LOS88_17865 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_17870 PF03932 CutC family LOS88_17875 PF00480 ROK family LOS88_17885 PF01435 Peptidase family M48 LOS88_17890 PF12849 PBP superfamily domain LOS88_17895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_17895 PF00512 His Kinase A (phospho-acceptor) domain LOS88_17895 PF00989 PAS fold LOS88_17895 PF11808 Phosphate regulon sensor protein PhoR LOS88_17900 PF00072 Response regulator receiver domain LOS88_17900 PF00486 Transcriptional regulatory protein, C terminal LOS88_17905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LOS88_17910 PF00990 Diguanylate cyclase, GGDEF domain LOS88_17910 PF00072 Response regulator receiver domain LOS88_17920 PF00892 EamA-like transporter family LOS88_17925 PF12431 Transcriptional regulator LOS88_17925 PF00072 Response regulator receiver domain LOS88_17930 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LOS88_17930 PF00989 PAS fold LOS88_17930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_17930 PF17203 Single cache domain 3 LOS88_17935 PF00390 Malic enzyme, N-terminal domain LOS88_17935 PF03949 Malic enzyme, NAD binding domain LOS88_17955 PF01047 MarR family LOS88_17960 PF00529 HlyD membrane-fusion protein of T1SS LOS88_17960 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_17985 PF01679 Proteolipid membrane potential modulator LOS88_17995 PF13597 Anaerobic ribonucleoside-triphosphate reductase LOS88_17995 PF03477 ATP cone domain LOS88_18005 PF00533 BRCA1 C Terminus (BRCT) domain LOS88_18005 PF01653 NAD-dependent DNA ligase adenylation domain LOS88_18005 PF03120 NAD-dependent DNA ligase OB-fold domain LOS88_18005 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LOS88_18005 PF12826 Helix-hairpin-helix motif LOS88_18010 PF04354 ZipA, C-terminal FtsZ-binding domain LOS88_18015 PF06470 SMC proteins Flexible Hinge Domain LOS88_18015 PF02463 RecF/RecN/SMC N terminal domain LOS88_18025 PF03458 UPF0126 domain LOS88_18035 PF05951 Bacterial protein of unknown function (DUF882) LOS88_18040 PF01471 Putative peptidoglycan binding domain LOS88_18040 PF03734 L,D-transpeptidase catalytic domain LOS88_18055 PF00535 Glycosyl transferase family 2 LOS88_18070 PF00128 Alpha amylase, catalytic domain LOS88_18080 PF00196 Bacterial regulatory proteins, luxR family LOS88_18080 PF00072 Response regulator receiver domain LOS88_18100 PF02080 TrkA-C domain LOS88_18100 PF02254 TrkA-N domain LOS88_18100 PF00999 Sodium/hydrogen exchanger family LOS88_18105 PF00990 Diguanylate cyclase, GGDEF domain LOS88_18110 PF01171 PP-loop family LOS88_18110 PF09179 TilS substrate binding domain LOS88_18110 PF11734 TilS substrate C-terminal domain LOS88_18125 PF08543 Phosphomethylpyrimidine kinase LOS88_18130 PF01276 Orn/Lys/Arg decarboxylase, major domain LOS88_18130 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LOS88_18130 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain LOS88_18135 PF13520 Amino acid permease LOS88_18140 PF00486 Transcriptional regulatory protein, C terminal LOS88_18140 PF18500 CadC C-terminal domain 1 LOS88_18145 PF13520 Amino acid permease LOS88_18150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18150 PF03466 LysR substrate binding domain LOS88_18155 PF12706 Beta-lactamase superfamily domain LOS88_18170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18170 PF03466 LysR substrate binding domain LOS88_18180 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_18180 PF00205 Thiamine pyrophosphate enzyme, central domain LOS88_18180 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LOS88_18185 PF03306 Alpha-acetolactate decarboxylase LOS88_18190 PF03466 LysR substrate binding domain LOS88_18190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18195 PF00579 tRNA synthetases class I (W and Y) LOS88_18200 PF01476 LysM domain LOS88_18200 PF08525 Opacity-associated protein A N-terminal motif LOS88_18200 PF01551 Peptidase family M23 LOS88_18205 PF03702 Anhydro-N-acetylmuramic acid kinase LOS88_18215 PF01042 Endoribonuclease L-PSP LOS88_18225 PF01965 DJ-1/PfpI family LOS88_18230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18230 PF03466 LysR substrate binding domain LOS88_18245 PF00698 Acyl transferase domain LOS88_18245 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_18245 PF16197 Ketoacyl-synthetase C-terminal extension LOS88_18245 PF00109 Beta-ketoacyl synthase, N-terminal domain LOS88_18245 PF02801 Beta-ketoacyl synthase, C-terminal domain LOS88_18245 PF08659 KR domain LOS88_18245 PF00550 Phosphopantetheine attachment site LOS88_18245 PF14765 Polyketide synthase dehydratase LOS88_18255 PF00456 Transketolase, thiamine diphosphate binding domain LOS88_18255 PF02780 Transketolase, C-terminal domain LOS88_18255 PF02779 Transketolase, pyrimidine binding domain LOS88_18260 PF02773 S-adenosylmethionine synthetase, C-terminal domain LOS88_18260 PF02772 S-adenosylmethionine synthetase, central domain LOS88_18260 PF00438 S-adenosylmethionine synthetase, N-terminal domain LOS88_18265 PF10263 SprT-like family LOS88_18265 PF17283 SprT-like zinc ribbon domain LOS88_18270 PF04231 Endonuclease I LOS88_18275 PF04452 RNA methyltransferase LOS88_18280 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain LOS88_18280 PF02951 Prokaryotic glutathione synthetase, N-terminal domain LOS88_18285 PF02622 Uncharacterized ACR, COG1678 LOS88_18290 PF03652 Holliday junction resolvase LOS88_18295 PF00854 POT family LOS88_18300 PF03466 LysR substrate binding domain LOS88_18300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18305 PF07690 Major Facilitator Superfamily LOS88_18310 PF17863 AAA lid domain LOS88_18310 PF07726 ATPase family associated with various cellular activities (AAA) LOS88_18320 PF11992 Domain of unknown function (DUF3488) LOS88_18320 PF13559 Domain of unknown function (DUF4129) LOS88_18320 PF01841 Transglutaminase-like superfamily LOS88_18325 PF01235 Sodium:alanine symporter family LOS88_18330 PF00923 Transaldolase/Fructose-6-phosphate aldolase LOS88_18340 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LOS88_18345 PF01336 OB-fold nucleic acid binding domain LOS88_18345 PF02811 PHP domain LOS88_18345 PF07733 Bacterial DNA polymerase III alpha NTPase domain LOS88_18345 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LOS88_18345 PF14579 Helix-hairpin-helix motif LOS88_18350 PF01351 Ribonuclease HII LOS88_18355 PF02684 Lipid-A-disaccharide synthetase LOS88_18360 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_18360 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 LOS88_18365 PF07977 FabA-like domain LOS88_18370 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD LOS88_18370 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_18375 PF03938 Outer membrane protein (OmpH-like) LOS88_18380 PF01103 Surface antigen LOS88_18380 PF07244 Surface antigen variable number repeat LOS88_18385 PF17820 PDZ domain LOS88_18385 PF02163 Peptidase family M50 LOS88_18390 PF13288 DXP reductoisomerase C-terminal domain LOS88_18390 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LOS88_18390 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LOS88_18400 PF01255 Putative undecaprenyl diphosphate synthase LOS88_18405 PF01765 Ribosome recycling factor LOS88_18410 PF00696 Amino acid kinase family LOS88_18415 PF00889 Elongation factor TS LOS88_18420 PF00318 Ribosomal protein S2 LOS88_18425 PF00557 Metallopeptidase family M24 LOS88_18430 PF01842 ACT domain LOS88_18430 PF08335 GlnD PII-uridylyltransferase LOS88_18430 PF01966 HD domain LOS88_18430 PF01909 Nucleotidyltransferase domain LOS88_18435 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_18435 PF14602 Hexapeptide repeat of succinyl-transferase LOS88_18435 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal LOS88_18440 PF11944 Protein of unknown function (DUF3461) LOS88_18445 PF02378 Phosphotransferase system, EIIC LOS88_18445 PF00367 phosphotransferase system, EIIB LOS88_18450 PF07148 Maltose operon periplasmic protein precursor (MalM) LOS88_18455 PF02264 LamB porin LOS88_18460 PF00258 Flavodoxin LOS88_18465 PF00849 RNA pseudouridylate synthase LOS88_18470 PF04287 tRNA pseudouridine synthase C LOS88_18495 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) LOS88_18500 PF07348 Syd protein (SUKH-2) LOS88_18505 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term LOS88_18505 PF14489 QueF-like protein LOS88_18515 PF00990 Diguanylate cyclase, GGDEF domain LOS88_18520 PF11892 Domain of unknown function (DUF3412) LOS88_18520 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases LOS88_18520 PF03641 Possible lysine decarboxylase LOS88_18525 PF01367 5'-3' exonuclease, C-terminal SAM fold LOS88_18525 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LOS88_18530 PF00180 Isocitrate/isopropylmalate dehydrogenase LOS88_18530 PF18324 Hypothetical protein TT1725 LOS88_18540 PF01728 FtsJ-like methyltransferase LOS88_18540 PF18125 RlmM ferredoxin-like domain LOS88_18545 PF04241 Protein of unknown function (DUF423) LOS88_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18555 PF03466 LysR substrate binding domain LOS88_18560 PF00672 HAMP domain LOS88_18560 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_18565 PF00817 impB/mucB/samB family LOS88_18565 PF11799 impB/mucB/samB family C-terminal domain LOS88_18565 PF11798 IMS family HHH motif LOS88_18575 PF01965 DJ-1/PfpI family LOS88_18580 PF08546 Ketopantoate reductase PanE/ApbA C terminal LOS88_18580 PF02558 Ketopantoate reductase PanE/ApbA LOS88_18585 PF04461 Protein of unknown function (DUF520) LOS88_18590 PF03502 Nucleoside-specific channel-forming protein, Tsx LOS88_18595 PF07690 Major Facilitator Superfamily LOS88_18600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LOS88_18610 PF05175 Methyltransferase small domain LOS88_18615 PF01722 BolA-like protein LOS88_18620 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) LOS88_18620 PF11973 NQRA C-terminal domain LOS88_18625 PF03116 NQR2, RnfD, RnfE family LOS88_18630 PF04205 FMN-binding domain LOS88_18635 PF02508 Rnf-Nqr subunit, membrane protein LOS88_18640 PF02508 Rnf-Nqr subunit, membrane protein LOS88_18645 PF00175 Oxidoreductase NAD-binding domain LOS88_18645 PF00970 Oxidoreductase FAD-binding domain LOS88_18645 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_18650 PF02424 ApbE family LOS88_18695 PF00106 short chain dehydrogenase LOS88_18705 PF00875 DNA photolyase LOS88_18705 PF03441 FAD binding domain of DNA photolyase LOS88_18710 PF13411 MerR HTH family regulatory protein LOS88_18715 PF08349 Protein of unknown function (DUF1722) LOS88_18730 PF06508 Queuosine biosynthesis protein QueC LOS88_18745 PF01817 Chorismate mutase type II LOS88_18745 PF00800 Prephenate dehydratase LOS88_18775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_18780 PF13609 Gram-negative porin LOS88_18820 PF00106 short chain dehydrogenase LOS88_18845 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LOS88_18875 PF00114 Pilin (bacterial filament) LOS88_18875 PF07963 Prokaryotic N-terminal methylation motif LOS88_18880 PF02805 Metal binding domain of Ada LOS88_18880 PF06029 AlkA N-terminal domain LOS88_18880 PF00730 HhH-GPD superfamily base excision DNA repair protein LOS88_18880 PF12833 Helix-turn-helix domain LOS88_18885 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LOS88_18885 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LOS88_18890 PF01136 Peptidase family U32 LOS88_18890 PF12392 Collagenase LOS88_18895 PF01810 LysE type translocator LOS88_18900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_18900 PF03466 LysR substrate binding domain LOS88_18905 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LOS88_18905 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LOS88_18910 PF02743 Cache domain LOS88_18910 PF00672 HAMP domain LOS88_18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_18915 PF00072 Response regulator receiver domain LOS88_18925 PF01627 Hpt domain LOS88_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_18925 PF02895 Signal transducing histidine kinase, homodimeric domain LOS88_18925 PF07194 P2 response regulator binding domain LOS88_18925 PF01584 CheW-like domain LOS88_18930 PF12729 Four helix bundle sensory module for signal transduction LOS88_18930 PF00672 HAMP domain LOS88_18930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_18935 PF01584 CheW-like domain LOS88_18940 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_18940 PF00672 HAMP domain LOS88_18945 PF01739 CheR methyltransferase, SAM binding domain LOS88_18945 PF03705 CheR methyltransferase, all-alpha domain LOS88_18950 PF03975 CheD chemotactic sensory transduction LOS88_18955 PF01339 CheB methylesterase LOS88_18955 PF00072 Response regulator receiver domain LOS88_18960 PF03725 3' exoribonuclease family, domain 2 LOS88_18960 PF00575 S1 RNA binding domain LOS88_18960 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LOS88_18960 PF00013 KH domain LOS88_18960 PF01138 3' exoribonuclease family, domain 1 LOS88_18965 PF00312 Ribosomal protein S15 LOS88_18970 PF16198 tRNA pseudouridylate synthase B C-terminal domain LOS88_18970 PF01509 TruB family pseudouridylate synthase (N terminal domain) LOS88_18970 PF09157 Pseudouridine synthase II TruB, C-terminal LOS88_18975 PF02033 Ribosome-binding factor A LOS88_18980 PF00009 Elongation factor Tu GTP binding domain LOS88_18980 PF11987 Translation-initiation factor 2 LOS88_18980 PF08364 Bacterial translation initiation factor IF-2 associated region LOS88_18980 PF04760 Translation initiation factor IF-2, N-terminal region LOS88_18985 PF13184 NusA-like KH domain LOS88_18985 PF08529 NusA N-terminal domain LOS88_18985 PF00575 S1 RNA binding domain LOS88_18990 PF02576 RimP N-terminal domain LOS88_18990 PF17384 RimP C-terminal SH3 domain LOS88_19005 PF03840 Preprotein translocase SecG subunit LOS88_19010 PF00121 Triosephosphate isomerase LOS88_19015 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LOS88_19015 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LOS88_19015 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LOS88_19015 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LOS88_19020 PF00809 Pterin binding enzyme LOS88_19025 PF01434 Peptidase family M41 LOS88_19025 PF06480 FtsH Extracellular LOS88_19025 PF17862 AAA+ lid domain LOS88_19025 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_19030 PF01728 FtsJ-like methyltransferase LOS88_19035 PF01985 CRS1 / YhbY (CRM) domain LOS88_19045 PF01272 Transcription elongation factor, GreA/GreB, C-term LOS88_19045 PF03449 Transcription elongation factor, N-terminal LOS88_19050 PF13677 Membrane MotB of proton-channel complex MotA/MotB LOS88_19050 PF00691 OmpA family LOS88_19055 PF01618 MotA/TolQ/ExbB proton channel family LOS88_19060 PF02609 Exonuclease VII small subunit LOS88_19065 PF00348 Polyprenyl synthetase LOS88_19070 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LOS88_19070 PF02780 Transketolase, C-terminal domain LOS88_19070 PF02779 Transketolase, pyrimidine binding domain LOS88_19075 PF00149 Calcineurin-like phosphoesterase LOS88_19075 PF02872 5'-nucleotidase, C-terminal domain LOS88_19095 PF02954 Bacterial regulatory protein, Fis family LOS88_19095 PF00072 Response regulator receiver domain LOS88_19095 PF00158 Sigma-54 interaction domain LOS88_19100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase LOS88_19100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_19110 PF04102 SlyX LOS88_19115 PF12911 N-terminal TM domain of oligopeptide transport permease C LOS88_19115 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_19120 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_19125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LOS88_19130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_19130 PF00005 ABC transporter LOS88_19135 PF04608 Phosphatidylglycerophosphatase A LOS88_19140 PF00586 AIR synthase related protein, N-terminal domain LOS88_19140 PF02769 AIR synthase related protein, C-terminal domain LOS88_19145 PF01029 NusB family LOS88_19150 PF00885 6,7-dimethyl-8-ribityllumazine synthase LOS88_19155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LOS88_19155 PF00925 GTP cyclohydrolase II LOS88_19160 PF00677 Lumazine binding domain LOS88_19165 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LOS88_19165 PF01872 RibD C-terminal domain LOS88_19170 PF03477 ATP cone domain LOS88_19175 PF00464 Serine hydroxymethyltransferase LOS88_19185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_19185 PF00512 His Kinase A (phospho-acceptor) domain LOS88_19185 PF01627 Hpt domain LOS88_19185 PF00072 Response regulator receiver domain LOS88_19185 PF00672 HAMP domain LOS88_19190 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LOS88_19200 PF00072 Response regulator receiver domain LOS88_19200 PF00486 Transcriptional regulatory protein, C terminal LOS88_19205 PF03264 NapC/NirT cytochrome c family, N-terminal region LOS88_19210 PF01568 Molydopterin dinucleotide binding domain LOS88_19210 PF18364 Molybdopterin oxidoreductase N-terminal domain LOS88_19210 PF00384 Molybdopterin oxidoreductase LOS88_19215 PF02613 Nitrate reductase delta subunit LOS88_19225 PF03707 Bacterial signalling protein N terminal repeat LOS88_19225 PF00990 Diguanylate cyclase, GGDEF domain LOS88_19225 PF00563 EAL domain LOS88_19235 PF00501 AMP-binding enzyme LOS88_19235 PF13193 AMP-binding enzyme C-terminal domain LOS88_19235 PF16177 Acetyl-coenzyme A synthetase N-terminus LOS88_19240 PF01220 Dehydroquinase class II LOS88_19245 PF00364 Biotin-requiring enzyme LOS88_19250 PF00289 Biotin carboxylase, N-terminal domain LOS88_19250 PF02785 Biotin carboxylase C-terminal domain LOS88_19250 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LOS88_19260 PF00474 Sodium:solute symporter family LOS88_19265 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LOS88_19265 PF02378 Phosphotransferase system, EIIC LOS88_19265 PF00367 phosphotransferase system, EIIB LOS88_19270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_19270 PF03466 LysR substrate binding domain LOS88_19275 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_19275 PF00107 Zinc-binding dehydrogenase LOS88_19285 PF14602 Hexapeptide repeat of succinyl-transferase LOS88_19285 PF12464 Maltose acetyltransferase LOS88_19290 PF00881 Nitroreductase family LOS88_19295 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LOS88_19295 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_19300 PF01343 Peptidase family S49 LOS88_19305 PF17969 L,D-transpeptidase C-terminal domain LOS88_19305 PF03734 L,D-transpeptidase catalytic domain LOS88_19320 PF02472 Biopolymer transport protein ExbD/TolR LOS88_19325 PF01618 MotA/TolQ/ExbB proton channel family LOS88_19330 PF01618 MotA/TolQ/ExbB proton channel family LOS88_19345 PF01609 Transposase DDE domain LOS88_19345 PF13808 DDE_Tnp_1-associated LOS88_19350 PF00593 TonB dependent receptor LOS88_19350 PF07715 TonB-dependent Receptor Plug Domain LOS88_19360 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_19365 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_19365 PF12911 N-terminal TM domain of oligopeptide transport permease C LOS88_19375 PF00005 ABC transporter LOS88_19375 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_19380 PF00005 ABC transporter LOS88_19380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LOS88_19390 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LOS88_19390 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LOS88_19390 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LOS88_19395 PF01370 NAD dependent epimerase/dehydratase family LOS88_19400 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) LOS88_19410 PF01464 Transglycosylase SLT domain LOS88_19425 PF00005 ABC transporter LOS88_19425 PF12848 ABC transporter LOS88_19435 PF00860 Permease family LOS88_19440 PF00749 tRNA synthetases class I (E and Q), catalytic domain LOS88_19445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_19445 PF00672 HAMP domain LOS88_19455 PF00313 'Cold-shock' DNA-binding domain LOS88_19495 PF00929 Exonuclease LOS88_19500 PF03193 RsgA GTPase LOS88_19505 PF02666 Phosphatidylserine decarboxylase LOS88_19510 PF09905 DNA-binding protein VF530 LOS88_19525 PF00171 Aldehyde dehydrogenase family LOS88_19530 PF00696 Amino acid kinase family LOS88_19530 PF01472 PUA domain LOS88_19535 PF07417 Sigma factor-binding transcriptional regulator Crl LOS88_19540 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) LOS88_19545 PF00156 Phosphoribosyl transferase domain LOS88_19550 PF07687 Peptidase dimerisation domain LOS88_19550 PF01546 Peptidase family M20/M25/M40 LOS88_19555 PF05099 Tellurite resistance protein TerB LOS88_19555 PF00226 DnaJ domain LOS88_19560 PF00483 Nucleotidyl transferase LOS88_19565 PF01636 Phosphotransferase enzyme family LOS88_19570 PF04453 LPS transport system D LOS88_19570 PF03968 OstA-like protein LOS88_19575 PF00639 PPIC-type PPIASE domain LOS88_19575 PF09312 SurA N-terminal domain LOS88_19580 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LOS88_19585 PF00398 Ribosomal RNA adenine dimethylase LOS88_19590 PF04379 ApaG domain LOS88_19595 PF00149 Calcineurin-like phosphoesterase LOS88_19610 PF00296 Luciferase-like monooxygenase LOS88_19620 PF07670 Nucleoside recognition LOS88_19625 PF01018 GTP1/OBG LOS88_19625 PF01926 50S ribosome-binding GTPase LOS88_19630 PF01016 Ribosomal L27 protein LOS88_19635 PF00829 Ribosomal prokaryotic L21 protein LOS88_19640 PF00348 Polyprenyl synthetase LOS88_19645 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) LOS88_19650 PF01145 SPFH domain / Band 7 family LOS88_19655 PF01145 SPFH domain / Band 7 family LOS88_19655 PF12221 Bacterial membrane protein N terminal LOS88_19660 PF16360 GTP-binding GTPase Middle Region LOS88_19660 PF13167 GTP-binding GTPase N-terminal LOS88_19660 PF01926 50S ribosome-binding GTPase LOS88_19665 PF17209 Hfq protein LOS88_19675 PF08676 MutL C terminal dimerisation domain LOS88_19675 PF01119 DNA mismatch repair protein, C-terminal domain LOS88_19680 PF08676 MutL C terminal dimerisation domain LOS88_19680 PF01119 DNA mismatch repair protein, C-terminal domain LOS88_19685 PF01520 N-acetylmuramoyl-L-alanine amidase LOS88_19690 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LOS88_19695 PF03853 YjeF-related protein N-terminus LOS88_19695 PF01256 Carbohydrate kinase LOS88_19700 PF08331 Domain of unknown function (DUF1730) LOS88_19705 PF00480 ROK family LOS88_19715 PF00005 ABC transporter LOS88_19715 PF09383 NIL domain LOS88_19720 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_19725 PF03180 NLPA lipoprotein LOS88_19730 PF02357 Transcription termination factor nusG LOS88_19735 PF00672 HAMP domain LOS88_19735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_19740 PF00563 EAL domain LOS88_19740 PF00990 Diguanylate cyclase, GGDEF domain LOS88_19740 PF03707 Bacterial signalling protein N terminal repeat LOS88_19745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_19745 PF00512 His Kinase A (phospho-acceptor) domain LOS88_19745 PF09456 RcsC Alpha-Beta-Loop (ABL) LOS88_19745 PF00072 Response regulator receiver domain LOS88_19765 PF01966 HD domain LOS88_19765 PF13286 Phosphohydrolase-associated domain LOS88_19770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_19770 PF00512 His Kinase A (phospho-acceptor) domain LOS88_19770 PF18415 Histidine kinase receptor ArcB trans-membrane domain LOS88_19770 PF01627 Hpt domain LOS88_19770 PF00989 PAS fold LOS88_19770 PF00072 Response regulator receiver domain LOS88_19790 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) LOS88_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_19795 PF03466 LysR substrate binding domain LOS88_19805 PF01259 SAICAR synthetase LOS88_19810 PF06804 NlpB/DapX lipoprotein LOS88_19815 PF00701 Dihydrodipicolinate synthetase family LOS88_19820 PF01842 ACT domain LOS88_19825 PF00578 AhpC/TSA family LOS88_19830 PF03887 YfbU domain LOS88_19835 PF04217 Protein of unknown function, DUF412 LOS88_19840 PF00871 Acetokinase family LOS88_19845 PF07085 DRTGG domain LOS88_19845 PF01515 Phosphate acetyl/butaryl transferase LOS88_19855 PF00483 Nucleotidyl transferase LOS88_19860 PF00854 POT family LOS88_19865 PF00072 Response regulator receiver domain LOS88_19895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LOS88_19900 PF02321 Outer membrane efflux protein LOS88_19905 PF01207 Dihydrouridine synthase (Dus) LOS88_19910 PF02954 Bacterial regulatory protein, Fis family LOS88_19925 PF11799 impB/mucB/samB family C-terminal domain LOS88_19925 PF13438 Domain of unknown function (DUF4113) LOS88_19925 PF00817 impB/mucB/samB family LOS88_19925 PF11798 IMS family HHH motif LOS88_19930 PF00717 Peptidase S24-like LOS88_19945 PF02796 Helix-turn-helix domain of resolvase LOS88_19945 PF00665 Integrase core domain LOS88_19950 PF01695 IstB-like ATP binding protein LOS88_19960 PF13358 DDE superfamily endonuclease LOS88_19960 PF13592 Winged helix-turn helix LOS88_20000 PF01546 Peptidase family M20/M25/M40 LOS88_20005 PF03466 LysR substrate binding domain LOS88_20005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_20010 PF01810 LysE type translocator LOS88_20015 PF10369 Small subunit of acetolactate synthase LOS88_20020 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_20020 PF00205 Thiamine pyrophosphate enzyme, central domain LOS88_20020 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LOS88_20035 PF01569 PAP2 superfamily LOS88_20050 PF00682 HMGL-like LOS88_20050 PF08502 LeuA allosteric (dimerisation) domain LOS88_20055 PF00180 Isocitrate/isopropylmalate dehydrogenase LOS88_20060 PF00330 Aconitase family (aconitate hydratase) LOS88_20065 PF00694 Aconitase C-terminal domain LOS88_20085 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_20090 PF00005 ABC transporter LOS88_20095 PF13638 PIN domain LOS88_20095 PF02562 PhoH-like protein LOS88_20105 PF08343 Ribonucleotide reductase N-terminal LOS88_20105 PF00317 Ribonucleotide reductase, all-alpha domain LOS88_20105 PF02867 Ribonucleotide reductase, barrel domain LOS88_20135 PF00990 Diguanylate cyclase, GGDEF domain LOS88_20135 PF03707 Bacterial signalling protein N terminal repeat LOS88_20135 PF00563 EAL domain LOS88_20145 PF00118 TCP-1/cpn60 chaperonin family LOS88_20150 PF00166 Chaperonin 10 Kd subunit LOS88_20155 PF01554 MatE LOS88_20160 PF04186 FxsA cytoplasmic membrane protein LOS88_20165 PF10415 Fumarase C C-terminus LOS88_20165 PF00206 Lyase LOS88_20170 PF03605 Anaerobic c4-dicarboxylate membrane transporter LOS88_20175 PF00814 Glycoprotease family LOS88_20180 PF01165 Ribosomal protein S21 LOS88_20185 PF09424 Yqey-like protein LOS88_20190 PF01807 CHC2 zinc finger LOS88_20190 PF10410 DnaB-helicase binding domain of primase LOS88_20190 PF08278 DNA primase DnaG DnaB-binding LOS88_20190 PF08275 DNA primase catalytic core, N-terminal domain LOS88_20195 PF04546 Sigma-70, non-essential region LOS88_20195 PF03979 Sigma-70 factor, region 1.1 LOS88_20195 PF00140 Sigma-70 factor, region 1.2 LOS88_20195 PF04539 Sigma-70 region 3 LOS88_20195 PF04545 Sigma-70, region 4 LOS88_20195 PF04542 Sigma-70 region 2 LOS88_20215 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LOS88_20215 PF02843 Phosphoribosylglycinamide synthetase, C domain LOS88_20215 PF02844 Phosphoribosylglycinamide synthetase, N domain LOS88_20220 PF01808 AICARFT/IMPCHase bienzyme LOS88_20220 PF02142 MGS-like domain LOS88_20225 PF13411 MerR HTH family regulatory protein LOS88_20235 PF03889 Alternative ribosome-rescue factor A LOS88_20240 PF06969 HemN C-terminal domain LOS88_20240 PF04055 Radical SAM superfamily LOS88_20245 PF01725 Ham1 family LOS88_20250 PF07690 Major Facilitator Superfamily LOS88_20255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LOS88_20255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LOS88_20265 PF13302 Acetyltransferase (GNAT) domain LOS88_20270 PF13302 Acetyltransferase (GNAT) domain LOS88_20275 PF07504 Fungalysin/Thermolysin Propeptide Motif LOS88_20275 PF03413 Peptidase propeptide and YPEB domain LOS88_20275 PF02868 Thermolysin metallopeptidase, alpha-helical domain LOS88_20275 PF01447 Thermolysin metallopeptidase, catalytic domain LOS88_20275 PF04151 Bacterial pre-peptidase C-terminal domain LOS88_20280 PF03466 LysR substrate binding domain LOS88_20280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_20285 PF07690 Major Facilitator Superfamily LOS88_20290 PF00583 Acetyltransferase (GNAT) family LOS88_20295 PF00009 Elongation factor Tu GTP binding domain LOS88_20295 PF03144 Elongation factor Tu domain 2 LOS88_20295 PF16658 Class II release factor RF3, C-terminal domain LOS88_20305 PF00990 Diguanylate cyclase, GGDEF domain LOS88_20305 PF00072 Response regulator receiver domain LOS88_20310 PF05762 VWA domain containing CoxE-like protein LOS88_20315 PF07728 AAA domain (dynein-related subfamily) LOS88_20315 PF17868 AAA lid domain LOS88_20315 PF12592 Protein of unknown function (DUF3763) LOS88_20325 PF00583 Acetyltransferase (GNAT) family LOS88_20325 PF13673 Acetyltransferase (GNAT) domain LOS88_20335 PF00501 AMP-binding enzyme LOS88_20340 PF04262 Glutamate-cysteine ligase LOS88_20345 PF05193 Peptidase M16 inactive domain LOS88_20345 PF00675 Insulinase (Peptidase family M16) LOS88_20350 PF09335 SNARE associated Golgi protein LOS88_20355 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_20355 PF00107 Zinc-binding dehydrogenase LOS88_20380 PF00970 Oxidoreductase FAD-binding domain LOS88_20380 PF00175 Oxidoreductase NAD-binding domain LOS88_20385 PF03948 Ribosomal protein L9, C-terminal domain LOS88_20385 PF01281 Ribosomal protein L9, N-terminal domain LOS88_20390 PF01084 Ribosomal protein S18 LOS88_20395 PF01250 Ribosomal protein S6 LOS88_20400 PF01566 Natural resistance-associated macrophage protein LOS88_20405 PF02272 DHHA1 domain LOS88_20405 PF01411 tRNA synthetases class II (A) LOS88_20405 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LOS88_20415 PF00216 Bacterial DNA-binding protein LOS88_20420 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ LOS88_20425 PF07238 PilZ domain LOS88_20430 PF18073 Rubredoxin metal binding domain LOS88_20445 PF18429 Domain of unknown function (DUF5609) LOS88_20455 PF01048 Phosphorylase superfamily LOS88_20460 PF01676 Metalloenzyme superfamily LOS88_20465 PF02885 Glycosyl transferase family, helical bundle domain LOS88_20465 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LOS88_20465 PF00591 Glycosyl transferase family, a/b domain LOS88_20470 PF01791 DeoC/LacD family aldolase LOS88_20480 PF07662 Na+ dependent nucleoside transporter C-terminus LOS88_20480 PF07670 Nucleoside recognition LOS88_20480 PF01773 Na+ dependent nucleoside transporter N-terminus LOS88_20485 PF01026 TatD related DNase LOS88_20490 PF07963 Prokaryotic N-terminal methylation motif LOS88_20495 PF02664 S-Ribosylhomocysteinase (LuxS) LOS88_20505 PF00543 Nitrogen regulatory protein P-II LOS88_20510 PF00795 Carbon-nitrogen hydrolase LOS88_20510 PF02540 NAD synthase LOS88_20530 PF05567 Neisseria PilC beta-propeller domain LOS88_20550 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor LOS88_20550 PF07963 Prokaryotic N-terminal methylation motif LOS88_20555 PF02401 LytB protein LOS88_20560 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LOS88_20565 PF01252 Signal peptidase (SPase) II LOS88_20570 PF06827 Zinc finger found in FPG and IleRS LOS88_20570 PF08264 Anticodon-binding domain of tRNA LOS88_20570 PF00133 tRNA synthetases class I (I, L, M and V) LOS88_20575 PF06574 FAD synthetase LOS88_20575 PF01687 Riboflavin kinase LOS88_20580 PF03023 Lipid II flippase MurJ LOS88_20585 PF01649 Ribosomal protein S20 LOS88_20590 PF01022 Bacterial regulatory protein, arsR family LOS88_20595 PF03466 LysR substrate binding domain LOS88_20595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_20605 PF06965 Na+/H+ antiporter 1 LOS88_20610 PF00303 Thymidylate synthase LOS88_20615 PF01790 Prolipoprotein diacylglyceryl transferase LOS88_20620 PF01590 GAF domain LOS88_20620 PF05524 PEP-utilising enzyme, N-terminal LOS88_20620 PF00391 PEP-utilising enzyme, mobile domain LOS88_20620 PF02896 PEP-utilising enzyme, TIM barrel domain LOS88_20625 PF00293 NUDIX domain LOS88_20630 PF02976 DNA mismatch repair enzyme MutH LOS88_20640 PF01245 Ribosomal protein L19 LOS88_20645 PF01746 tRNA (Guanine-1)-methyltransferase LOS88_20650 PF05239 PRC-barrel domain LOS88_20650 PF01782 RimM N-terminal domain LOS88_20655 PF00886 Ribosomal protein S16 LOS88_20660 PF02881 SRP54-type protein, helical bundle domain LOS88_20660 PF02978 Signal peptide binding domain LOS88_20660 PF00448 SRP54-type protein, GTPase domain LOS88_20665 PF01578 Cytochrome C assembly protein LOS88_20670 PF00571 CBS domain LOS88_20670 PF03471 Transporter associated domain LOS88_20670 PF01595 Cyclin M transmembrane N-terminal domain LOS88_20675 PF02082 Transcriptional regulator LOS88_20680 PF00175 Oxidoreductase NAD-binding domain LOS88_20680 PF00970 Oxidoreductase FAD-binding domain LOS88_20680 PF00042 Globin LOS88_20685 PF08238 Sel1 repeat LOS88_20690 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LOS88_20690 PF00056 lactate/malate dehydrogenase, NAD binding domain LOS88_20695 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_20700 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_20705 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_20710 PF00005 ABC transporter LOS88_20715 PF02863 Arginine repressor, C-terminal domain LOS88_20715 PF01316 Arginine repressor, DNA binding domain LOS88_20720 PF04261 Dyp-type peroxidase family LOS88_20725 PF08402 TOBE domain LOS88_20725 PF00005 ABC transporter LOS88_20735 PF13416 Bacterial extracellular solute-binding protein LOS88_20740 PF00543 Nitrogen regulatory protein P-II LOS88_20745 PF00472 RF-1 domain LOS88_20750 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LOS88_20750 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LOS88_20760 PF03883 Peroxide stress protein YaaA LOS88_20765 PF00437 Type II/IV secretion system protein LOS88_20770 PF00437 Type II/IV secretion system protein LOS88_20775 PF01168 Alanine racemase, N-terminal domain LOS88_20780 PF03807 NADP oxidoreductase coenzyme F420-dependent LOS88_20780 PF14748 Pyrroline-5-carboxylate reductase dimerisation LOS88_20785 PF02325 YGGT family LOS88_20790 PF02594 Uncharacterised ACR, YggU family COG1872 LOS88_20800 PF01773 Na+ dependent nucleoside transporter N-terminus LOS88_20800 PF07670 Nucleoside recognition LOS88_20800 PF07662 Na+ dependent nucleoside transporter C-terminus LOS88_20805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_20805 PF03466 LysR substrate binding domain LOS88_20810 PF00255 Glutathione peroxidase LOS88_20820 PF02595 Glycerate kinase family LOS88_20825 PF02447 GntP family permease LOS88_20830 PF05651 Putative sugar diacid recognition LOS88_20830 PF17853 GGDEF-like domain LOS88_20830 PF13556 PucR C-terminal helix-turn-helix domain LOS88_20835 PF06062 Uncharacterised protein family (UPF0231) LOS88_20860 PF03372 Endonuclease/Exonuclease/phosphatase family LOS88_20870 PF00271 Helicase conserved C-terminal domain LOS88_20870 PF00270 DEAD/DEAH box helicase LOS88_20880 PF08534 Redoxin LOS88_20885 PF00403 Heavy-metal-associated domain LOS88_20890 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LOS88_20890 PF11852 Domain of unknown function (DUF3372) LOS88_20890 PF03714 Bacterial pullanase-associated domain LOS88_20890 PF18494 Pullulanase Ins domain LOS88_20890 PF17967 Pullulanase N2 domain LOS88_20895 PF13737 Transposase DDE domain LOS88_20915 PF02583 Metal-sensitive transcriptional repressor LOS88_20920 PF00155 Aminotransferase class I and II LOS88_20925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_20925 PF03466 LysR substrate binding domain LOS88_20935 PF04055 Radical SAM superfamily LOS88_20940 PF11230 Protein of unknown function (DUF3029) LOS88_20965 PF00970 Oxidoreductase FAD-binding domain LOS88_20965 PF00175 Oxidoreductase NAD-binding domain LOS88_20965 PF00111 2Fe-2S iron-sulfur cluster binding domain LOS88_20980 PF00535 Glycosyl transferase family 2 LOS88_20985 PF01522 Polysaccharide deacetylase LOS88_20985 PF14883 Hypothetical glycosyl hydrolase family 13 LOS88_21000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_21000 PF17200 Single Cache domain 2 LOS88_21000 PF00672 HAMP domain LOS88_21005 PF18416 N-acetylglucosamine binding protein domain 2 LOS88_21005 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LOS88_21010 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_21015 PF00005 ABC transporter LOS88_21020 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_21025 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_21035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_21035 PF03466 LysR substrate binding domain LOS88_21040 PF00005 ABC transporter LOS88_21040 PF12857 TOBE-like domain LOS88_21045 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_21050 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_21070 PF01609 Transposase DDE domain LOS88_21070 PF13808 DDE_Tnp_1-associated LOS88_21080 PF14602 Hexapeptide repeat of succinyl-transferase LOS88_21080 PF12464 Maltose acetyltransferase LOS88_21100 PF00293 NUDIX domain LOS88_21105 PF00459 Inositol monophosphatase family LOS88_21110 PF03222 Tryptophan/tyrosine permease family LOS88_21115 PF01588 Putative tRNA binding domain LOS88_21120 PF02311 AraC-like ligand binding domain LOS88_21120 PF12833 Helix-turn-helix domain LOS88_21125 PF01340 Met Apo-repressor, MetJ LOS88_21130 PF01053 Cys/Met metabolism PLP-dependent enzyme LOS88_21135 PF00742 Homoserine dehydrogenase LOS88_21135 PF00696 Amino acid kinase family LOS88_21135 PF03447 Homoserine dehydrogenase, NAD binding domain LOS88_21140 PF01384 Phosphate transporter family LOS88_21145 PF01865 Protein of unknown function DUF47 LOS88_21155 PF00701 Dihydrodipicolinate synthetase family LOS88_21160 PF08468 Methyltransferase small domain N-terminal LOS88_21160 PF05175 Methyltransferase small domain LOS88_21165 PF00483 Nucleotidyl transferase LOS88_21170 PF08323 Starch synthase catalytic domain LOS88_21170 PF00534 Glycosyl transferases group 1 LOS88_21210 PF03553 Na+/H+ antiporter family LOS88_21215 PF01521 Iron-sulphur cluster biosynthesis LOS88_21225 PF00654 Voltage gated chloride channel LOS88_21230 PF00202 Aminotransferase class-III LOS88_21245 PF06965 Na+/H+ antiporter 1 LOS88_21245 PF13462 Thioredoxin LOS88_21280 PF18339 RapA N-terminal Tudor like domain 1 LOS88_21280 PF12137 RNA polymerase recycling family C-terminal LOS88_21280 PF00271 Helicase conserved C-terminal domain LOS88_21280 PF18337 RapA N-terminal Tudor like domain LOS88_21280 PF00176 SNF2 family N-terminal domain LOS88_21285 PF00849 RNA pseudouridylate synthase LOS88_21295 PF14602 Hexapeptide repeat of succinyl-transferase LOS88_21295 PF12464 Maltose acetyltransferase LOS88_21300 PF00128 Alpha amylase, catalytic domain LOS88_21300 PF11941 Domain of unknown function (DUF3459) LOS88_21305 PF00367 phosphotransferase system, EIIB LOS88_21305 PF02378 Phosphotransferase system, EIIC LOS88_21310 PF00356 Bacterial regulatory proteins, lacI family LOS88_21325 PF00710 Asparaginase, N-terminal LOS88_21325 PF17763 Glutaminase/Asparaginase C-terminal domain LOS88_21330 PF00571 CBS domain LOS88_21330 PF03471 Transporter associated domain LOS88_21330 PF01595 Cyclin M transmembrane N-terminal domain LOS88_21335 PF09335 SNARE associated Golgi protein LOS88_21340 PF00768 D-alanyl-D-alanine carboxypeptidase LOS88_21375 PF02599 Global regulator protein family LOS88_21380 PF00696 Amino acid kinase family LOS88_21380 PF13840 ACT domain LOS88_21380 PF01842 ACT domain LOS88_21385 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LOS88_21385 PF02272 DHHA1 domain LOS88_21385 PF01411 tRNA synthetases class II (A) LOS88_21390 PF02631 RecX family LOS88_21395 PF00154 recA bacterial DNA recombination protein LOS88_21400 PF02464 Competence-damaged protein LOS88_21410 PF09588 YqaJ-like viral recombinase domain LOS88_21430 PF04002 RadC-like JAB domain LOS88_21470 PF00271 Helicase conserved C-terminal domain LOS88_21470 PF00176 SNF2 family N-terminal domain LOS88_21500 PF13356 Arm DNA-binding domain LOS88_21500 PF00589 Phage integrase family LOS88_21505 PF05188 MutS domain II LOS88_21505 PF05192 MutS domain III LOS88_21505 PF05190 MutS family domain IV LOS88_21505 PF00488 MutS domain V LOS88_21505 PF01624 MutS domain I LOS88_21510 PF01734 Patatin-like phospholipase LOS88_21520 PF04172 LrgB-like family LOS88_21525 PF03788 LrgA family LOS88_21530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_21530 PF03466 LysR substrate binding domain LOS88_21540 PF04073 Aminoacyl-tRNA editing domain LOS88_21565 PF04055 Radical SAM superfamily LOS88_21565 PF06968 Biotin and Thiamin Synthesis associated domain LOS88_21570 PF05690 Thiazole biosynthesis protein ThiG LOS88_21580 PF00899 ThiF family LOS88_21585 PF02581 Thiamine monophosphate synthase LOS88_21590 PF13667 ThiC-associated domain LOS88_21590 PF01964 Radical SAM ThiC family LOS88_21600 PF13808 DDE_Tnp_1-associated LOS88_21600 PF01609 Transposase DDE domain LOS88_21610 PF13808 DDE_Tnp_1-associated LOS88_21610 PF01609 Transposase DDE domain LOS88_21615 PF17425 Arylsulfotransferase Ig-like domain LOS88_21615 PF05935 Arylsulfotransferase (ASST) LOS88_21635 PF00072 Response regulator receiver domain LOS88_21635 PF00486 Transcriptional regulatory protein, C terminal LOS88_21640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_21645 PF08443 RimK-like ATP-grasp domain LOS88_21645 PF18030 RimK PreATP-grasp domain LOS88_21650 PF02574 Homocysteine S-methyltransferase LOS88_21650 PF02310 B12 binding domain LOS88_21650 PF00809 Pterin binding enzyme LOS88_21650 PF02965 Vitamin B12 dependent methionine synthase, activation domain LOS88_21650 PF02607 B12 binding domain LOS88_21655 PF00999 Sodium/hydrogen exchanger family LOS88_21680 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) LOS88_21690 PF07690 Major Facilitator Superfamily LOS88_21695 PF01914 MarC family integral membrane protein LOS88_21705 PF01523 Putative modulator of DNA gyrase LOS88_21710 PF00795 Carbon-nitrogen hydrolase LOS88_21725 PF13502 AsmA-like C-terminal region LOS88_21725 PF13116 Protein of unknown function LOS88_21730 PF00575 S1 RNA binding domain LOS88_21730 PF10150 Ribonuclease E/G family LOS88_21735 PF02545 Maf-like protein LOS88_21740 PF04093 rod shape-determining protein MreD LOS88_21745 PF04085 rod shape-determining protein MreC LOS88_21775 PF14245 Type IV pilin PilA LOS88_21775 PF07963 Prokaryotic N-terminal methylation motif LOS88_21780 PF07963 Prokaryotic N-terminal methylation motif LOS88_21780 PF00114 Pilin (bacterial filament) LOS88_21795 PF00482 Type II secretion system (T2SS), protein F LOS88_21800 PF00437 Type II/IV secretion system protein LOS88_21800 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain LOS88_21810 PF13401 AAA domain LOS88_21810 PF09077 Mu B transposition protein, C terminal LOS88_21815 PF00263 Bacterial type II and III secretion system protein LOS88_21815 PF03958 Bacterial type II/III secretion system short domain LOS88_21845 PF00990 Diguanylate cyclase, GGDEF domain LOS88_21845 PF00563 EAL domain LOS88_21845 PF17157 Gammaproteobacterial periplasmic sensor domain LOS88_21850 PF12792 CSS motif domain associated with EAL LOS88_21850 PF00563 EAL domain LOS88_21855 PF01699 Sodium/calcium exchanger protein LOS88_21860 PF00221 Aromatic amino acid lyase LOS88_21865 PF01175 Urocanase Rossmann-like domain LOS88_21865 PF17392 Urocanase C-terminal domain LOS88_21865 PF17391 Urocanase N-terminal domain LOS88_21870 PF00491 Arginase family LOS88_21875 PF01979 Amidohydrolase family LOS88_21880 PF00392 Bacterial regulatory proteins, gntR family LOS88_21880 PF07702 UTRA domain LOS88_21885 PF00484 Carbonic anhydrase LOS88_21890 PF00140 Sigma-70 factor, region 1.2 LOS88_21890 PF04542 Sigma-70 region 2 LOS88_21890 PF04545 Sigma-70, region 4 LOS88_21895 PF18075 FtsX extracellular domain LOS88_21900 PF00005 ABC transporter LOS88_21905 PF02881 SRP54-type protein, helical bundle domain LOS88_21905 PF00448 SRP54-type protein, GTPase domain LOS88_21930 PF00999 Sodium/hydrogen exchanger family LOS88_21930 PF02254 TrkA-N domain LOS88_21935 PF02525 Flavodoxin-like fold LOS88_21940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_21940 PF03466 LysR substrate binding domain LOS88_21945 PF00106 short chain dehydrogenase LOS88_21960 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain LOS88_21960 PF00326 Prolyl oligopeptidase family LOS88_21985 PF01464 Transglycosylase SLT domain LOS88_21985 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_21995 PF02416 mttA/Hcf106 family LOS88_22000 PF03466 LysR substrate binding domain LOS88_22000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22005 PF01914 MarC family integral membrane protein LOS88_22010 PF10678 Protein of unknown function (DUF2492) LOS88_22015 PF00375 Sodium:dicarboxylate symporter family LOS88_22025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22025 PF03466 LysR substrate binding domain LOS88_22030 PF13533 Biotin-lipoyl like LOS88_22035 PF07690 Major Facilitator Superfamily LOS88_22040 PF07947 YhhN family LOS88_22055 PF00440 Bacterial regulatory proteins, tetR family LOS88_22105 PF00009 Elongation factor Tu GTP binding domain LOS88_22105 PF03144 Elongation factor Tu domain 2 LOS88_22105 PF03143 Elongation factor Tu C-terminal domain LOS88_22110 PF14492 Elongation Factor G, domain II LOS88_22110 PF03144 Elongation factor Tu domain 2 LOS88_22110 PF00009 Elongation factor Tu GTP binding domain LOS88_22110 PF00679 Elongation factor G C-terminus LOS88_22110 PF03764 Elongation factor G, domain IV LOS88_22115 PF00177 Ribosomal protein S7p/S5e LOS88_22120 PF00164 Ribosomal protein S12/S23 LOS88_22125 PF04077 DsrH like protein LOS88_22130 PF02635 DsrE/DsrF-like family LOS88_22135 PF02635 DsrE/DsrF-like family LOS88_22140 PF01042 Endoribonuclease L-PSP LOS88_22145 PF08348 YheO-like PAS domain LOS88_22145 PF13309 HTH domain LOS88_22150 PF04983 RNA polymerase Rpb1, domain 3 LOS88_22150 PF05000 RNA polymerase Rpb1, domain 4 LOS88_22150 PF04998 RNA polymerase Rpb1, domain 5 LOS88_22150 PF04997 RNA polymerase Rpb1, domain 1 LOS88_22150 PF00623 RNA polymerase Rpb1, domain 2 LOS88_22155 PF00562 RNA polymerase Rpb2, domain 6 LOS88_22155 PF04560 RNA polymerase Rpb2, domain 7 LOS88_22155 PF04565 RNA polymerase Rpb2, domain 3 LOS88_22155 PF04561 RNA polymerase Rpb2, domain 2 LOS88_22155 PF04563 RNA polymerase beta subunit LOS88_22155 PF10385 RNA polymerase beta subunit external 1 domain LOS88_22160 PF00542 Ribosomal protein L7/L12 C-terminal domain LOS88_22160 PF16320 Ribosomal protein L7/L12 dimerisation domain LOS88_22165 PF00466 Ribosomal protein L10 LOS88_22170 PF00687 Ribosomal protein L1p/L10e family LOS88_22175 PF03946 Ribosomal protein L11, N-terminal domain LOS88_22175 PF00298 Ribosomal protein L11, RNA binding domain LOS88_22180 PF00467 KOW motif LOS88_22180 PF02357 Transcription termination factor nusG LOS88_22185 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LOS88_22195 PF03144 Elongation factor Tu domain 2 LOS88_22195 PF00009 Elongation factor Tu GTP binding domain LOS88_22195 PF03143 Elongation factor Tu C-terminal domain LOS88_22210 PF00485 Phosphoribulokinase / Uridine kinase family LOS88_22215 PF03099 Biotin/lipoate A/B protein ligase family LOS88_22215 PF08279 HTH domain LOS88_22215 PF02237 Biotin protein ligase C terminal domain LOS88_22220 PF01565 FAD binding domain LOS88_22220 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LOS88_22225 PF02080 TrkA-C domain LOS88_22225 PF02254 TrkA-N domain LOS88_22230 PF02386 Cation transport protein LOS88_22235 PF01751 Toprim domain LOS88_22235 PF01131 DNA topoisomerase LOS88_22245 PF00512 His Kinase A (phospho-acceptor) domain LOS88_22245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_22245 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_22250 PF03264 NapC/NirT cytochrome c family, N-terminal region LOS88_22255 PF00384 Molybdopterin oxidoreductase LOS88_22255 PF18364 Molybdopterin oxidoreductase N-terminal domain LOS88_22255 PF01568 Molydopterin dinucleotide binding domain LOS88_22265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_22270 PF00072 Response regulator receiver domain LOS88_22270 PF00486 Transcriptional regulatory protein, C terminal LOS88_22285 PF01794 Ferric reductase like transmembrane component LOS88_22290 PF00174 Oxidoreductase molybdopterin binding domain LOS88_22295 PF06496 Protein of unknown function (DUF1097) LOS88_22300 PF00158 Sigma-54 interaction domain LOS88_22300 PF00072 Response regulator receiver domain LOS88_22310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_22310 PF00512 His Kinase A (phospho-acceptor) domain LOS88_22330 PF00571 CBS domain LOS88_22330 PF00478 IMP dehydrogenase / GMP reductase domain LOS88_22335 PF10063 Uncharacterized integral membrane protein (DUF2301) LOS88_22345 PF01037 Lrp/AsnC ligand binding domain LOS88_22350 PF03590 Aspartate-ammonia ligase LOS88_22355 PF02861 Clp amino terminal domain, pathogenicity island component LOS88_22355 PF07724 AAA domain (Cdc48 subfamily) LOS88_22355 PF17871 AAA lid domain LOS88_22355 PF10431 C-terminal, D2-small domain, of ClpB protein LOS88_22355 PF00004 ATPase family associated with various cellular activities (AAA) LOS88_22360 PF02578 Multi-copper polyphenol oxidoreductase laccase LOS88_22365 PF00849 RNA pseudouridylate synthase LOS88_22365 PF01479 S4 domain LOS88_22370 PF13525 Outer membrane lipoprotein LOS88_22375 PF07992 Pyridine nucleotide-disulphide oxidoreductase LOS88_22375 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LOS88_22380 PF00375 Sodium:dicarboxylate symporter family LOS88_22385 PF03313 Serine dehydratase alpha chain LOS88_22390 PF08348 YheO-like PAS domain LOS88_22390 PF13309 HTH domain LOS88_22400 PF02233 NAD(P) transhydrogenase beta subunit LOS88_22405 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LOS88_22405 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LOS88_22405 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch LOS88_22410 PF00465 Iron-containing alcohol dehydrogenase LOS88_22415 PF12833 Helix-turn-helix domain LOS88_22415 PF06719 AraC-type transcriptional regulator N-terminus LOS88_22420 PF08212 Lipocalin-like domain LOS88_22425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_22425 PF00672 HAMP domain LOS88_22425 PF02743 Cache domain LOS88_22435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22435 PF03466 LysR substrate binding domain LOS88_22455 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LOS88_22455 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LOS88_22460 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain LOS88_22460 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain LOS88_22465 PF01316 Arginine repressor, DNA binding domain LOS88_22465 PF02863 Arginine repressor, C-terminal domain LOS88_22470 PF03606 C4-dicarboxylate anaerobic carrier LOS88_22475 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LOS88_22475 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LOS88_22480 PF00696 Amino acid kinase family LOS88_22505 PF06969 HemN C-terminal domain LOS88_22505 PF04055 Radical SAM superfamily LOS88_22510 PF10675 Protein of unknown function (DUF2489) LOS88_22515 PF04220 Der GTPase activator (YihI) LOS88_22520 PF00034 Cytochrome c LOS88_22525 PF01926 50S ribosome-binding GTPase LOS88_22535 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LOS88_22535 PF01488 Shikimate / quinate 5-dehydrogenase LOS88_22535 PF08501 Shikimate dehydrogenase substrate binding domain LOS88_22540 PF01218 Coproporphyrinogen III oxidase LOS88_22545 PF01300 Telomere recombination LOS88_22550 PF00731 AIR carboxylase LOS88_22555 PF01396 Topoisomerase DNA binding C4 zinc finger LOS88_22560 PF04361 Protein of unknown function (DUF494) LOS88_22565 PF02481 DNA recombination-mediator protein A LOS88_22565 PF17782 DprA winged helix domain LOS88_22570 PF01476 LysM domain LOS88_22575 PF01327 Polypeptide deformylase LOS88_22580 PF00551 Formyl transferase LOS88_22580 PF02911 Formyl transferase, C-terminal domain LOS88_22585 PF01029 NusB family LOS88_22585 PF01189 16S rRNA methyltransferase RsmB/F LOS88_22590 PF02080 TrkA-C domain LOS88_22590 PF02254 TrkA-N domain LOS88_22595 PF02386 Cation transport protein LOS88_22600 PF00679 Elongation factor G C-terminus LOS88_22600 PF00009 Elongation factor Tu GTP binding domain LOS88_22600 PF03144 Elongation factor Tu domain 2 LOS88_22605 PF00120 Glutamine synthetase, catalytic domain LOS88_22605 PF03951 Glutamine synthetase, beta-Grasp domain LOS88_22615 PF00512 His Kinase A (phospho-acceptor) domain LOS88_22615 PF00989 PAS fold LOS88_22615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_22620 PF02954 Bacterial regulatory protein, Fis family LOS88_22620 PF00072 Response regulator receiver domain LOS88_22620 PF00158 Sigma-54 interaction domain LOS88_22625 PF00962 Adenosine/AMP deaminase LOS88_22630 PF02646 RmuC family LOS88_22645 PF02082 Transcriptional regulator LOS88_22650 PF00294 pfkB family carbohydrate kinase LOS88_22655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22655 PF03466 LysR substrate binding domain LOS88_22660 PF00958 GMP synthase C terminal domain LOS88_22660 PF00117 Glutamine amidotransferase class-I LOS88_22660 PF02540 NAD synthase LOS88_22665 PF00171 Aldehyde dehydrogenase family LOS88_22670 PF00202 Aminotransferase class-III LOS88_22675 PF01381 Helix-turn-helix LOS88_22675 PF07883 Cupin domain LOS88_22680 PF00171 Aldehyde dehydrogenase family LOS88_22690 PF00892 EamA-like transporter family LOS88_22695 PF17200 Single Cache domain 2 LOS88_22695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_22695 PF00672 HAMP domain LOS88_22700 PF04143 Sulphur transport LOS88_22705 PF01389 OmpA-like transmembrane domain LOS88_22705 PF00691 OmpA family LOS88_22710 PF00440 Bacterial regulatory proteins, tetR family LOS88_22720 PF00291 Pyridoxal-phosphate dependent enzyme LOS88_22720 PF00585 C-terminal regulatory domain of Threonine dehydratase LOS88_22725 PF00920 Dehydratase family LOS88_22730 PF01063 Amino-transferase class IV LOS88_22740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LOS88_22740 PF00205 Thiamine pyrophosphate enzyme, central domain LOS88_22740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LOS88_22745 PF01078 Magnesium chelatase, subunit ChlI LOS88_22745 PF13335 Magnesium chelatase, subunit ChlI C-terminal LOS88_22750 PF01553 Acyltransferase LOS88_22755 PF01553 Acyltransferase LOS88_22760 PF04463 Protein of unknown function (DUF523) LOS88_22770 PF00857 Isochorismatase family LOS88_22775 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LOS88_22775 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LOS88_22780 PF01323 DSBA-like thioredoxin domain LOS88_22785 PF01636 Phosphotransferase enzyme family LOS88_22790 PF13746 4Fe-4S dicluster domain LOS88_22790 PF12801 4Fe-4S binding domain LOS88_22790 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase LOS88_22795 PF06288 Protein of unknown function (DUF1040) LOS88_22800 PF00360 Phytochrome region LOS88_22800 PF00990 Diguanylate cyclase, GGDEF domain LOS88_22800 PF01590 GAF domain LOS88_22800 PF00563 EAL domain LOS88_22805 PF13411 MerR HTH family regulatory protein LOS88_22810 PF00403 Heavy-metal-associated domain LOS88_22815 PF00156 Phosphoribosyl transferase domain LOS88_22820 PF01138 3' exoribonuclease family, domain 1 LOS88_22820 PF03725 3' exoribonuclease family, domain 2 LOS88_22825 PF08340 Domain of unknown function (DUF1732) LOS88_22825 PF03755 YicC-like family, N-terminal region LOS88_22830 PF03466 LysR substrate binding domain LOS88_22830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22835 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_22835 PF00107 Zinc-binding dehydrogenase LOS88_22840 PF00756 Putative esterase LOS88_22845 PF03466 LysR substrate binding domain LOS88_22845 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_22885 PF12867 DinB superfamily LOS88_22885 PF03781 Sulfatase-modifying factor enzyme 1 LOS88_22895 PF13520 Amino acid permease LOS88_22900 PF01588 Putative tRNA binding domain LOS88_22905 PF13520 Amino acid permease LOS88_22910 PF04074 YhcH/YjgK/YiaL LOS88_22915 PF02837 Glycosyl hydrolases family 2, sugar binding domain LOS88_22915 PF02929 Beta galactosidase small chain LOS88_22915 PF16353 Domain of unknown function(DUF4981) LOS88_22915 PF00703 Glycosyl hydrolases family 2 LOS88_22915 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LOS88_22920 PF00356 Bacterial regulatory proteins, lacI family LOS88_22960 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_22965 PF01367 5'-3' exonuclease, C-terminal SAM fold LOS88_22965 PF00476 DNA polymerase family A LOS88_22965 PF01612 3'-5' exonuclease LOS88_22965 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LOS88_22975 PF06005 Cell division protein ZapB LOS88_22985 PF06426 Serine acetyltransferase, N-terminal LOS88_22985 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_22990 PF16916 Dimerisation domain of Zinc Transporter LOS88_22990 PF01545 Cation efflux family LOS88_22995 PF00486 Transcriptional regulatory protein, C terminal LOS88_22995 PF00072 Response regulator receiver domain LOS88_23000 PF00672 HAMP domain LOS88_23000 PF00512 His Kinase A (phospho-acceptor) domain LOS88_23000 PF16527 Two-component sensor protein CpxA, periplasmic domain LOS88_23000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_23005 PF00588 SpoU rRNA Methylase family LOS88_23010 PF01554 MatE LOS88_23015 PF02630 SCO1/SenC LOS88_23025 PF01726 LexA DNA binding domain LOS88_23025 PF00717 Peptidase S24-like LOS88_23030 PF01553 Acyltransferase LOS88_23035 PF01040 UbiA prenyltransferase family LOS88_23040 PF04345 Chorismate lyase LOS88_23060 PF08240 Alcohol dehydrogenase GroES-like domain LOS88_23060 PF00107 Zinc-binding dehydrogenase LOS88_23065 PF00356 Bacterial regulatory proteins, lacI family LOS88_23065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LOS88_23070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LOS88_23080 PF03611 PTS system sugar-specific permease component LOS88_23085 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) LOS88_23090 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LOS88_23095 PF00535 Glycosyl transferase family 2 LOS88_23100 PF01075 Glycosyltransferase family 9 (heptosyltransferase) LOS88_23105 PF01467 Cytidylyltransferase-like LOS88_23110 PF04393 Protein of unknown function (DUF535) LOS88_23115 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LOS88_23115 PF06827 Zinc finger found in FPG and IleRS LOS88_23115 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LOS88_23125 PF00471 Ribosomal protein L33 LOS88_23130 PF00830 Ribosomal L28 family LOS88_23135 PF04002 RadC-like JAB domain LOS88_23140 PF02441 Flavoprotein LOS88_23140 PF04127 DNA / pantothenate metabolism flavoprotein LOS88_23145 PF00692 dUTPase LOS88_23150 PF00440 Bacterial regulatory proteins, tetR family LOS88_23155 PF05552 Conserved TM helix LOS88_23155 PF00924 Mechanosensitive ion channel LOS88_23160 PF00342 Phosphoglucose isomerase LOS88_23165 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LOS88_23165 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LOS88_23170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LOS88_23170 PF03466 LysR substrate binding domain LOS88_23185 PF13380 CoA binding domain LOS88_23185 PF13607 Succinyl-CoA ligase like flavodoxin domain LOS88_23185 PF00583 Acetyltransferase (GNAT) family LOS88_23220 PF12724 Flavodoxin domain LOS88_23225 PF02386 Cation transport protein LOS88_23230 PF09186 Domain of unknown function (DUF1949) LOS88_23230 PF01205 Uncharacterized protein family UPF0029 LOS88_23235 PF00557 Metallopeptidase family M24 LOS88_23240 PF00501 AMP-binding enzyme LOS88_23240 PF13193 AMP-binding enzyme C-terminal domain LOS88_23245 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LOS88_23245 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LOS88_23245 PF00378 Enoyl-CoA hydratase/isomerase LOS88_23250 PF02803 Thiolase, C-terminal domain LOS88_23250 PF00108 Thiolase, N-terminal domain LOS88_23255 PF00486 Transcriptional regulatory protein, C terminal LOS88_23255 PF00072 Response regulator receiver domain LOS88_23260 PF00672 HAMP domain LOS88_23260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_23260 PF00512 His Kinase A (phospho-acceptor) domain LOS88_23265 PF01547 Bacterial extracellular solute-binding protein LOS88_23275 PF01206 Sulfurtransferase TusA LOS88_23280 PF01042 Endoribonuclease L-PSP LOS88_23285 PF00691 OmpA family LOS88_23285 PF13488 Glycine zipper LOS88_23290 PF03352 Methyladenine glycosylase LOS88_23295 PF02091 Glycyl-tRNA synthetase alpha subunit LOS88_23300 PF05746 DALR anticodon binding domain LOS88_23300 PF02092 Glycyl-tRNA synthetase beta subunit LOS88_23310 PF00563 EAL domain LOS88_23310 PF00990 Diguanylate cyclase, GGDEF domain LOS88_23310 PF03707 Bacterial signalling protein N terminal repeat LOS88_23315 PF03496 ADP-ribosyltransferase exoenzyme LOS88_23315 PF03545 Yersinia virulence determinant (YopE) LOS88_23320 PF05932 Tir chaperone protein (CesT) family LOS88_23340 PF00672 HAMP domain LOS88_23340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_23345 PF00356 Bacterial regulatory proteins, lacI family LOS88_23350 PF13458 Periplasmic binding protein LOS88_23355 PF02653 Branched-chain amino acid transport system / permease component LOS88_23360 PF11862 Domain of unknown function (DUF3382) LOS88_23360 PF02653 Branched-chain amino acid transport system / permease component LOS88_23365 PF12399 Branched-chain amino acid ATP-binding cassette transporter LOS88_23365 PF00005 ABC transporter LOS88_23370 PF00005 ABC transporter LOS88_23375 PF00581 Rhodanese-like domain LOS88_23380 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease LOS88_23380 PF01694 Rhomboid family LOS88_23385 PF04380 Membrane fusogenic activity LOS88_23390 PF00990 Diguanylate cyclase, GGDEF domain LOS88_23390 PF00563 EAL domain LOS88_23390 PF08447 PAS fold LOS88_23390 PF08448 PAS fold LOS88_23395 PF00175 Oxidoreductase NAD-binding domain LOS88_23400 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LOS88_23410 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LOS88_23410 PF07498 Rho termination factor, N-terminal domain LOS88_23410 PF07497 Rho termination factor, RNA-binding domain LOS88_23415 PF00085 Thioredoxin LOS88_23420 PF00271 Helicase conserved C-terminal domain LOS88_23420 PF00270 DEAD/DEAH box helicase LOS88_23425 PF02541 Ppx/GppA phosphatase family LOS88_23435 PF04445 Putative SAM-dependent methyltransferase LOS88_23440 PF03707 Bacterial signalling protein N terminal repeat LOS88_23440 PF00990 Diguanylate cyclase, GGDEF domain LOS88_23440 PF00563 EAL domain LOS88_23445 PF01432 Peptidase family M3 LOS88_23460 PF18416 N-acetylglucosamine binding protein domain 2 LOS88_23460 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading LOS88_23465 PF00490 Delta-aminolevulinic acid dehydratase LOS88_23470 PF01026 TatD related DNase LOS88_23475 PF00902 Sec-independent protein translocase protein (TatC) LOS88_23480 PF02416 mttA/Hcf106 family LOS88_23485 PF02416 mttA/Hcf106 family LOS88_23490 PF03109 ABC1 family LOS88_23495 PF02036 SCP-2 sterol transfer family LOS88_23500 PF01209 ubiE/COQ5 methyltransferase family LOS88_23505 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LOS88_23510 PF07969 Amidohydrolase family LOS88_23515 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LOS88_23560 PF03544 Gram-negative bacterial TonB protein C-terminal LOS88_23565 PF02472 Biopolymer transport protein ExbD/TolR LOS88_23570 PF01618 MotA/TolQ/ExbB proton channel family LOS88_23575 PF01618 MotA/TolQ/ExbB proton channel family LOS88_23585 PF00196 Bacterial regulatory proteins, luxR family LOS88_23585 PF03472 Autoinducer binding domain LOS88_23590 PF01380 SIS domain LOS88_23595 PF00455 DeoR C terminal sensor domain LOS88_23595 PF08220 DeoR-like helix-turn-helix domain LOS88_23600 PF00072 Response regulator receiver domain LOS88_23600 PF00486 Transcriptional regulatory protein, C terminal LOS88_23605 PF00672 HAMP domain LOS88_23605 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LOS88_23605 PF00512 His Kinase A (phospho-acceptor) domain LOS88_23610 PF00905 Penicillin binding protein transpeptidase domain LOS88_23620 PF06123 Inner membrane protein CreD LOS88_23635 PF00534 Glycosyl transferases group 1 LOS88_23635 PF13439 Glycosyltransferase Family 4 LOS88_23670 PF13614 AAA domain LOS88_23670 PF02706 Chain length determinant protein LOS88_23670 PF13807 G-rich domain on putative tyrosine kinase LOS88_23685 PF02397 Bacterial sugar transferase LOS88_23690 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_23690 PF14602 Hexapeptide repeat of succinyl-transferase LOS88_23690 PF12804 MobA-like NTP transferase domain LOS88_23695 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LOS88_23695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LOS88_23700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LOS88_23700 PF02874 ATP synthase alpha/beta family, beta-barrel domain LOS88_23705 PF00231 ATP synthase LOS88_23710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LOS88_23710 PF02874 ATP synthase alpha/beta family, beta-barrel domain LOS88_23710 PF00306 ATP synthase alpha/beta chain, C terminal domain LOS88_23715 PF00213 ATP synthase delta (OSCP) subunit LOS88_23720 PF00430 ATP synthase B/B' CF(0) LOS88_23725 PF00137 ATP synthase subunit C LOS88_23730 PF00119 ATP synthase A chain LOS88_23740 PF17762 HTH domain found in ParB protein LOS88_23740 PF02195 ParB-like nuclease domain LOS88_23745 PF13614 AAA domain LOS88_23750 PF02527 rRNA small subunit methyltransferase G LOS88_23755 PF01134 Glucose inhibited division protein A LOS88_23755 PF13932 GidA associated domain LOS88_23760 PF00258 Flavodoxin LOS88_23765 PF07715 TonB-dependent Receptor Plug Domain LOS88_23765 PF00593 TonB dependent receptor LOS88_23775 PF00005 ABC transporter LOS88_23780 PF01497 Periplasmic binding protein LOS88_23785 PF01032 FecCD transport family LOS88_23790 PF07804 HipA-like C-terminal domain LOS88_23790 PF13657 HipA N-terminal domain LOS88_23820 PF08463 EcoEI R protein C-terminal LOS88_23820 PF00271 Helicase conserved C-terminal domain LOS88_23820 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) LOS88_23820 PF04851 Type III restriction enzyme, res subunit LOS88_23825 PF02384 N-6 DNA Methylase LOS88_23825 PF12161 HsdM N-terminal domain LOS88_23830 PF01420 Type I restriction modification DNA specificity domain LOS88_23865 PF02899 Phage integrase, N-terminal SAM-like domain LOS88_23865 PF00589 Phage integrase family LOS88_23870 PF10396 GTP-binding protein TrmE N-terminus LOS88_23870 PF01926 50S ribosome-binding GTPase LOS88_23870 PF12631 MnmE helical domain LOS88_23875 PF14849 YidC periplasmic domain LOS88_23875 PF02096 60Kd inner membrane protein LOS88_23880 PF01809 Putative membrane protein insertion efficiency factor LOS88_23885 PF00825 Ribonuclease P LOS88_23890 PF00468 Ribosomal protein L34 LOS88_23895 PF00005 ABC transporter LOS88_23900 PF00528 Binding-protein-dependent transport system inner membrane component LOS88_23905 PF00497 Bacterial extracellular solute-binding proteins, family 3 LOS88_23935 PF00239 Resolvase, N terminal domain LOS88_23935 PF02796 Helix-turn-helix domain of resolvase LOS88_23990 PF00005 ABC transporter LOS88_24000 PF13533 Biotin-lipoyl like LOS88_24005 PF00440 Bacterial regulatory proteins, tetR family LOS88_24010 PF02371 Transposase IS116/IS110/IS902 family LOS88_24010 PF01548 Transposase LOS88_24035 PF03432 Relaxase/Mobilisation nuclease domain LOS88_24070 PF00563 EAL domain LOS88_24070 PF03707 Bacterial signalling protein N terminal repeat LOS88_24070 PF00990 Diguanylate cyclase, GGDEF domain LOS88_24095 PF13426 PAS domain LOS88_24095 PF08447 PAS fold LOS88_24095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_24100 PF13808 DDE_Tnp_1-associated LOS88_24100 PF01609 Transposase DDE domain LOS88_24110 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ LOS88_24115 PF00239 Resolvase, N terminal domain LOS88_24115 PF02796 Helix-turn-helix domain of resolvase LOS88_24120 PF00589 Phage integrase family LOS88_24120 PF13495 Phage integrase, N-terminal SAM-like domain LOS88_24135 PF01609 Transposase DDE domain LOS88_24135 PF13808 DDE_Tnp_1-associated LOS88_24150 PF00132 Bacterial transferase hexapeptide (six repeats) LOS88_24165 PF00144 Beta-lactamase LOS88_24200 PF01609 Transposase DDE domain LOS88_24205 PF00893 Small Multidrug Resistance protein LOS88_24210 PF00809 Pterin binding enzyme LOS88_24225 PF13610 DDE domain LOS88_24240 PF01609 Transposase DDE domain LOS88_24280 PF05973 Phage derived protein Gp49-like (DUF891) LOS88_24295 PF07015 VirC1 protein LOS88_24320 PF02796 Helix-turn-helix domain of resolvase LOS88_24320 PF00239 Resolvase, N terminal domain LOS88_24335 PF13700 Domain of unknown function (DUF4158) LOS88_24335 PF01526 Tn3 transposase DDE domain LOS88_24345 PF00403 Heavy-metal-associated domain LOS88_24355 PF01548 Transposase LOS88_24355 PF02371 Transposase IS116/IS110/IS902 family LOS88_24365 PF09278 MerR, DNA binding LOS88_24365 PF00376 MerR family regulatory protein LOS88_24380 PF00929 Exonuclease LOS88_24395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LOS88_24410 PF03432 Relaxase/Mobilisation nuclease domain LOS88_24495 PF01636 Phosphotransferase enzyme family LOS88_24500 PF13610 DDE domain LOS88_24515 PF13614 AAA domain LOS88_24515 PF00376 MerR family regulatory protein LOS88_24565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_24565 PF08447 PAS fold LOS88_24585 PF00672 HAMP domain LOS88_24585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LOS88_24605 PF04837 MbeB-like, N-term conserved region LOS88_24620 PF05713 Bacterial mobilisation protein (MobC) LOS88_24635 PF04899 MbeD/MobD like LOS88_24680 PF05713 Bacterial mobilisation protein (MobC) LOS88_24685 PF03432 Relaxase/Mobilisation nuclease domain