locus-tag class description KW556_00005 PF00308 Bacterial dnaA protein KW556_00005 PF08299 Bacterial dnaA protein helix-turn-helix KW556_00005 PF11638 DnaA N-terminal domain KW556_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KW556_00010 PF02767 DNA polymerase III beta subunit, central domain KW556_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KW556_00015 PF02463 RecF/RecN/SMC N terminal domain KW556_00020 PF00204 DNA gyrase B KW556_00020 PF00986 DNA gyrase B subunit, carboxyl terminus KW556_00020 PF18053 DNA gyrase B subunit insert domain KW556_00020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_00020 PF01751 Toprim domain KW556_00030 PF08279 HTH domain KW556_00030 PF13280 WYL domain KW556_00040 PF12706 Beta-lactamase superfamily domain KW556_00045 PF00011 Hsp20/alpha crystallin family KW556_00050 PF00011 Hsp20/alpha crystallin family KW556_00055 PF00155 Aminotransferase class I and II KW556_00070 PF07690 Major Facilitator Superfamily KW556_00075 PF00072 Response regulator receiver domain KW556_00075 PF00486 Transcriptional regulatory protein, C terminal KW556_00080 PF13493 Domain of unknown function (DUF4118) KW556_00080 PF13492 GAF domain KW556_00080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_00080 PF00512 His Kinase A (phospho-acceptor) domain KW556_00080 PF02702 Osmosensitive K+ channel His kinase sensor domain KW556_00085 PF02669 K+-transporting ATPase, c chain KW556_00095 PF03814 Potassium-transporting ATPase A subunit KW556_00100 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_00100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW556_00105 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_00105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_00105 PF00512 His Kinase A (phospho-acceptor) domain KW556_00110 PF00873 AcrB/AcrD/AcrF family KW556_00115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_00120 PF00440 Bacterial regulatory proteins, tetR family KW556_00150 PF00224 Pyruvate kinase, barrel domain KW556_00150 PF02887 Pyruvate kinase, alpha/beta domain KW556_00155 PF07690 Major Facilitator Superfamily KW556_00165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_00165 PF02743 Cache domain KW556_00165 PF00512 His Kinase A (phospho-acceptor) domain KW556_00170 PF02954 Bacterial regulatory protein, Fis family KW556_00170 PF00072 Response regulator receiver domain KW556_00170 PF14532 Sigma-54 interaction domain KW556_00185 PF12146 Serine aminopeptidase, S33 KW556_00190 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_00195 PF00588 SpoU rRNA Methylase family KW556_00195 PF12105 SpoU, rRNA methylase, C-terminal KW556_00200 PF04607 Region found in RelA / SpoT proteins KW556_00200 PF02824 TGS domain KW556_00200 PF13291 ACT domain KW556_00205 PF01192 RNA polymerase Rpb6 KW556_00210 PF00625 Guanylate kinase KW556_00215 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW556_00230 PF00892 EamA-like transporter family KW556_00250 PF03466 LysR substrate binding domain KW556_00250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_00255 PF00579 tRNA synthetases class I (W and Y) KW556_00260 PF00582 Universal stress protein family KW556_00265 PF07055 Enoyl reductase FAD binding domain KW556_00265 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KW556_00265 PF12241 Trans-2-enoyl-CoA reductase catalytic region KW556_00270 PF00210 Ferritin-like domain KW556_00280 PF07694 5TMR of 5TMR-LYT KW556_00280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_00280 PF06580 Histidine kinase KW556_00285 PF00072 Response regulator receiver domain KW556_00285 PF04397 LytTr DNA-binding domain KW556_00290 PF07690 Major Facilitator Superfamily KW556_00295 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KW556_00295 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_00295 PF02222 ATP-grasp domain KW556_00300 PF00731 AIR carboxylase KW556_00315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_00315 PF03466 LysR substrate binding domain KW556_00320 PF00593 TonB dependent receptor KW556_00320 PF07715 TonB-dependent Receptor Plug Domain KW556_00325 PF01177 Asp/Glu/Hydantoin racemase KW556_00360 PF00899 ThiF family KW556_00365 PF02657 Fe-S metabolism associated domain KW556_00370 PF00266 Aminotransferase class-V KW556_00375 PF13361 UvrD-like helicase C-terminal domain KW556_00375 PF00580 UvrD/REP helicase N-terminal domain KW556_00380 PF03707 Bacterial signalling protein N terminal repeat KW556_00380 PF00990 Diguanylate cyclase, GGDEF domain KW556_00380 PF00563 EAL domain KW556_00385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KW556_00390 PF00107 Zinc-binding dehydrogenase KW556_00390 PF08240 Alcohol dehydrogenase GroES-like domain KW556_00395 PF00155 Aminotransferase class I and II KW556_00400 PF00440 Bacterial regulatory proteins, tetR family KW556_00400 PF08360 QacR-like protein, C-terminal region KW556_00405 PF01370 NAD dependent epimerase/dehydratase family KW556_00410 PF00534 Glycosyl transferases group 1 KW556_00420 PF04932 O-Antigen ligase KW556_00425 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) KW556_00460 PF12833 Helix-turn-helix domain KW556_00460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term KW556_00465 PF01810 LysE type translocator KW556_00495 PF14001 YdfZ protein KW556_00510 PF13614 AAA domain KW556_00530 PF01695 IstB-like ATP binding protein KW556_00535 PF00665 Integrase core domain KW556_00550 PF00580 UvrD/REP helicase N-terminal domain KW556_00550 PF13361 UvrD-like helicase C-terminal domain KW556_00555 PF02608 ABC transporter substrate-binding protein PnrA-like KW556_00560 PF00005 ABC transporter KW556_00565 PF02653 Branched-chain amino acid transport system / permease component KW556_00570 PF02653 Branched-chain amino acid transport system / permease component KW556_00575 PF00149 Calcineurin-like phosphoesterase KW556_00575 PF02872 5'-nucleotidase, C-terminal domain KW556_00585 PF03448 MgtE intracellular N domain KW556_00585 PF01769 Divalent cation transporter KW556_00585 PF00571 CBS domain KW556_00590 PF14824 Sirohaem biosynthesis protein central KW556_00590 PF10414 Sirohaem synthase dimerisation region KW556_00590 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW556_00595 PF01226 Formate/nitrite transporter KW556_00600 PF13806 Rieske-like [2Fe-2S] domain KW556_00610 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_00610 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KW556_00610 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KW556_00610 PF18267 Rubredoxin NAD+ reductase C-terminal domain KW556_00610 PF04324 BFD-like [2Fe-2S] binding domain KW556_00625 PF00005 ABC transporter KW556_00630 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_00640 PF00004 ATPase family associated with various cellular activities (AAA) KW556_00640 PF07724 AAA domain (Cdc48 subfamily) KW556_00640 PF10431 C-terminal, D2-small domain, of ClpB protein KW556_00645 PF00227 Proteasome subunit KW556_00655 PF03485 Arginyl tRNA synthetase N terminal domain KW556_00655 PF00750 tRNA synthetases class I (R) KW556_00655 PF05746 DALR anticodon binding domain KW556_00665 PF04545 Sigma-70, region 4 KW556_00665 PF04542 Sigma-70 region 2 KW556_00675 PF02673 Bacitracin resistance protein BacA KW556_00680 PF01263 Aldose 1-epimerase KW556_00685 PF08544 GHMP kinases C terminal KW556_00685 PF10509 Galactokinase galactose-binding signature KW556_00685 PF00288 GHMP kinases N terminal domain KW556_00690 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KW556_00690 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KW556_00695 PF16363 GDP-mannose 4,6 dehydratase KW556_00700 PF00356 Bacterial regulatory proteins, lacI family KW556_00705 PF02837 Glycosyl hydrolases family 2, sugar binding domain KW556_00705 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KW556_00705 PF00703 Glycosyl hydrolases family 2 KW556_00705 PF16353 Domain of unknown function(DUF4981) KW556_00705 PF02929 Beta galactosidase small chain KW556_00710 PF13407 Periplasmic binding protein domain KW556_00715 PF00005 ABC transporter KW556_00720 PF02653 Branched-chain amino acid transport system / permease component KW556_00725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_00725 PF00672 HAMP domain KW556_00725 PF02743 Cache domain KW556_00730 PF05958 tRNA (Uracil-5-)-methyltransferase KW556_00745 PF00128 Alpha amylase, catalytic domain KW556_00745 PF02903 Alpha amylase, N-terminal ig-like domain KW556_00760 PF00012 Hsp70 protein KW556_00765 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW556_00765 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_00770 PF05981 CreA protein KW556_00785 PF01258 Prokaryotic dksA/traR C4-type zinc finger KW556_00790 PF00120 Glutamine synthetase, catalytic domain KW556_00795 PF00202 Aminotransferase class-III KW556_00800 PF13416 Bacterial extracellular solute-binding protein KW556_00805 PF13416 Bacterial extracellular solute-binding protein KW556_00810 PF00005 ABC transporter KW556_00810 PF08402 TOBE domain KW556_00815 PF00528 Binding-protein-dependent transport system inner membrane component KW556_00820 PF00528 Binding-protein-dependent transport system inner membrane component KW556_00825 PF03475 3-alpha domain KW556_00825 PF03473 MOSC domain KW556_00840 PF03061 Thioesterase superfamily KW556_00845 PF09382 RQC domain KW556_00845 PF00271 Helicase conserved C-terminal domain KW556_00845 PF00570 HRDC domain KW556_00845 PF00270 DEAD/DEAH box helicase KW556_00845 PF16124 RecQ zinc-binding KW556_00850 PF00034 Cytochrome c KW556_00855 PF02696 Uncharacterized ACR, YdiU/UPF0061 family KW556_00865 PF02592 Putative vitamin uptake transporter KW556_00870 PF03737 Aldolase/RraA KW556_00875 PF00672 HAMP domain KW556_00875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_00885 PF01197 Ribosomal protein L31 KW556_00890 PF00270 DEAD/DEAH box helicase KW556_00890 PF00271 Helicase conserved C-terminal domain KW556_00890 PF17764 3′ DNA-binding domain (3′BD) KW556_00890 PF18074 Primosomal protein N C-terminal domain KW556_00890 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KW556_00900 PF13460 NAD(P)H-binding KW556_00900 PF11066 Protein of unknown function (DUF2867) KW556_00905 PF03222 Tryptophan/tyrosine permease family KW556_00910 PF03949 Malic enzyme, NAD binding domain KW556_00910 PF00390 Malic enzyme, N-terminal domain KW556_00915 PF03631 Virulence factor BrkB KW556_00920 PF02580 D-Tyr-tRNA(Tyr) deacylase KW556_00925 PF17284 Spermidine synthase tetramerisation domain KW556_00930 PF00583 Acetyltransferase (GNAT) family KW556_00930 PF09500 Putative thioesterase (yiiD_Cterm) KW556_00940 PF00270 DEAD/DEAH box helicase KW556_00940 PF00271 Helicase conserved C-terminal domain KW556_00940 PF17191 RecG wedge domain KW556_00945 PF13091 PLD-like domain KW556_00955 PF01202 Shikimate kinase KW556_00960 PF00920 Dehydratase family KW556_00965 PF01081 KDPG and KHG aldolase KW556_00970 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW556_00970 PF00356 Bacterial regulatory proteins, lacI family KW556_00980 PF01551 Peptidase family M23 KW556_00985 PF01676 Metalloenzyme superfamily KW556_00985 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KW556_00990 PF00581 Rhodanese-like domain KW556_00995 PF02556 Preprotein translocase subunit SecB KW556_01000 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KW556_01000 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KW556_01005 PF01521 Iron-sulphur cluster biosynthesis KW556_01005 PF01106 NifU-like domain KW556_01010 PF00156 Phosphoribosyl transferase domain KW556_01015 PF00561 alpha/beta hydrolase fold KW556_01035 PF09371 Tex-like protein N-terminal domain KW556_01035 PF17674 HHH domain KW556_01035 PF16921 Tex protein YqgF-like domain KW556_01035 PF00575 S1 RNA binding domain KW556_01040 PF03449 Transcription elongation factor, N-terminal KW556_01040 PF01272 Transcription elongation factor, GreA/GreB, C-term KW556_01045 PF00486 Transcriptional regulatory protein, C terminal KW556_01045 PF00072 Response regulator receiver domain KW556_01050 PF00672 HAMP domain KW556_01050 PF00512 His Kinase A (phospho-acceptor) domain KW556_01050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_01060 PF00338 Ribosomal protein S10p/S20e KW556_01065 PF00297 Ribosomal protein L3 KW556_01070 PF00573 Ribosomal protein L4/L1 family KW556_01075 PF00276 Ribosomal protein L23 KW556_01080 PF03947 Ribosomal Proteins L2, C-terminal domain KW556_01080 PF00181 Ribosomal Proteins L2, RNA binding domain KW556_01085 PF00203 Ribosomal protein S19 KW556_01090 PF00237 Ribosomal protein L22p/L17e KW556_01095 PF07650 KH domain KW556_01095 PF00189 Ribosomal protein S3, C-terminal domain KW556_01100 PF00252 Ribosomal protein L16p/L10e KW556_01105 PF00831 Ribosomal L29 protein KW556_01110 PF00366 Ribosomal protein S17 KW556_01115 PF00238 Ribosomal protein L14p/L23e KW556_01120 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KW556_01120 PF00467 KOW motif KW556_01125 PF00281 Ribosomal protein L5 KW556_01125 PF00673 ribosomal L5P family C-terminus KW556_01130 PF00253 Ribosomal protein S14p/S29e KW556_01135 PF00410 Ribosomal protein S8 KW556_01140 PF00347 Ribosomal protein L6 KW556_01145 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KW556_01150 PF03719 Ribosomal protein S5, C-terminal domain KW556_01150 PF00333 Ribosomal protein S5, N-terminal domain KW556_01155 PF00327 Ribosomal protein L30p/L7e KW556_01160 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KW556_01165 PF00344 SecY translocase KW556_01170 PF00444 Ribosomal protein L36 KW556_01175 PF00416 Ribosomal protein S13/S18 KW556_01180 PF00411 Ribosomal protein S11 KW556_01185 PF00163 Ribosomal protein S4/S9 N-terminal domain KW556_01185 PF01479 S4 domain KW556_01190 PF01000 RNA polymerase Rpb3/RpoA insert domain KW556_01190 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KW556_01190 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KW556_01195 PF01196 Ribosomal protein L17 KW556_01230 PF00593 TonB dependent receptor KW556_01230 PF07715 TonB-dependent Receptor Plug Domain KW556_01235 PF00990 Diguanylate cyclase, GGDEF domain KW556_01235 PF17151 Periplasmic sensor domain KW556_01240 PF00512 His Kinase A (phospho-acceptor) domain KW556_01240 PF00672 HAMP domain KW556_01240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_01245 PF00072 Response regulator receiver domain KW556_01245 PF00486 Transcriptional regulatory protein, C terminal KW556_01255 PF02743 Cache domain KW556_01255 PF00672 HAMP domain KW556_01255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_01265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_01265 PF03466 LysR substrate binding domain KW556_01270 PF17954 Quercetinase C-terminal cupin domain KW556_01270 PF02678 Pirin KW556_01275 PF07681 DoxX KW556_01280 PF17946 RecC C-terminal domain KW556_01285 PF13361 UvrD-like helicase C-terminal domain KW556_01285 PF12705 PD-(D/E)XK nuclease superfamily KW556_01285 PF00580 UvrD/REP helicase N-terminal domain KW556_01290 PF13538 UvrD-like helicase C-terminal domain KW556_01305 PF00990 Diguanylate cyclase, GGDEF domain KW556_01320 PF07702 UTRA domain KW556_01320 PF00392 Bacterial regulatory proteins, gntR family KW556_01335 PF00528 Binding-protein-dependent transport system inner membrane component KW556_01345 PF08402 TOBE domain KW556_01345 PF00005 ABC transporter KW556_01355 PF00990 Diguanylate cyclase, GGDEF domain KW556_01375 PF01053 Cys/Met metabolism PLP-dependent enzyme KW556_01385 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_01385 PF12793 Sugar transport-related sRNA regulator N-term KW556_01390 PF00141 Peroxidase KW556_01405 PF03280 Proteobacterial lipase chaperone protein KW556_01410 PF00561 alpha/beta hydrolase fold KW556_01415 PF00579 tRNA synthetases class I (W and Y) KW556_01415 PF01479 S4 domain KW556_01420 PF00196 Bacterial regulatory proteins, luxR family KW556_01440 PF06628 Catalase-related immune-responsive KW556_01440 PF00199 Catalase KW556_01465 PF08264 Anticodon-binding domain of tRNA KW556_01465 PF00133 tRNA synthetases class I (I, L, M and V) KW556_01465 PF10458 Valyl tRNA synthetase tRNA binding arm KW556_01470 PF04364 DNA polymerase III chi subunit, HolC KW556_01475 PF00883 Cytosol aminopeptidase family, catalytic domain KW556_01475 PF02789 Cytosol aminopeptidase family, N-terminal domain KW556_01480 PF03739 Lipopolysaccharide export system permease LptF/LptG KW556_01485 PF03739 Lipopolysaccharide export system permease LptF/LptG KW556_01545 PF00589 Phage integrase family KW556_01545 PF13356 Arm DNA-binding domain KW556_01560 PF10548 P22AR C-terminal domain KW556_01560 PF08346 AntA/AntB antirepressor KW556_01585 PF08401 Domain of unknown function (DUF1738) KW556_01585 PF13362 Toprim domain KW556_01585 PF18818 Metallopeptidase superfamily domain KW556_01615 PF07715 TonB-dependent Receptor Plug Domain KW556_01615 PF00593 TonB dependent receptor KW556_01625 PF00768 D-alanyl-D-alanine carboxypeptidase KW556_01630 PF13520 Amino acid permease KW556_01650 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KW556_01665 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase KW556_01670 PF02602 Uroporphyrinogen-III synthase HemD KW556_01675 PF03900 Porphobilinogen deaminase, C-terminal domain KW556_01675 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KW556_01680 PF12633 Adenylate cyclase NT domain KW556_01680 PF01295 Adenylate cyclase, class-I KW556_01685 PF02230 Phospholipase/Carboxylesterase KW556_01690 PF01491 Frataxin-like domain KW556_01700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KW556_01700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KW556_01705 PF01678 Diaminopimelate epimerase KW556_01715 PF02899 Phage integrase, N-terminal SAM-like domain KW556_01715 PF00589 Phage integrase family KW556_01720 PF13419 Haloacid dehalogenase-like hydrolase KW556_01730 PF00027 Cyclic nucleotide-binding domain KW556_01730 PF13545 Crp-like helix-turn-helix domain KW556_01740 PF07722 Peptidase C26 KW556_01745 PF04751 Protein of unknown function (DUF615) KW556_01750 PF01523 Putative modulator of DNA gyrase KW556_01755 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KW556_01760 PF01722 BolA-like protein KW556_01770 PF05494 MlaC protein KW556_01775 PF02470 MlaD protein KW556_01780 PF02405 Permease MlaE KW556_01785 PF00005 ABC transporter KW556_01790 PF00571 CBS domain KW556_01790 PF01380 SIS domain KW556_01800 PF06835 Lipopolysaccharide-assembly, LptC-related KW556_01805 PF03968 OstA-like protein KW556_01810 PF00005 ABC transporter KW556_01810 PF12399 Branched-chain amino acid ATP-binding cassette transporter KW556_01815 PF00309 Sigma-54 factor, Activator interacting domain (AID) KW556_01815 PF04963 Sigma-54 factor, core binding domain KW556_01815 PF04552 Sigma-54, DNA binding domain KW556_01820 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KW556_01825 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_01830 PF03668 P-loop ATPase protein family KW556_01835 PF00381 PTS HPr component phosphorylation site KW556_01840 PF00874 PRD domain KW556_01840 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_01840 PF05043 Mga helix-turn-helix domain KW556_01840 PF08279 HTH domain KW556_01845 PF07071 KDGP aldolase KW556_01850 PF03841 L-seryl-tRNA selenium transferase KW556_01855 PF01979 Amidohydrolase family KW556_01885 PF13180 PDZ domain KW556_01890 PF00595 PDZ domain KW556_01890 PF13180 PDZ domain KW556_01900 PF03969 AFG1-like ATPase KW556_01905 PF00572 Ribosomal protein L13 KW556_01910 PF00380 Ribosomal protein S9/S16 KW556_01915 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal KW556_01915 PF00355 Rieske [2Fe-2S] domain KW556_01920 PF00032 Cytochrome b(C-terminal)/b6/petD KW556_01920 PF00033 Cytochrome b/b6/petB KW556_01925 PF02167 Cytochrome C1 family KW556_01930 PF00043 Glutathione S-transferase, C-terminal domain KW556_01930 PF02798 Glutathione S-transferase, N-terminal domain KW556_01935 PF04386 Stringent starvation protein B KW556_01940 PF04972 BON domain KW556_01945 PF13580 SIS domain KW556_01950 PF02021 Uncharacterised protein family UPF0102 KW556_01955 PF04348 LppC putative lipoprotein KW556_01960 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW556_01975 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW556_01980 PF00813 FliP family KW556_01985 PF01313 Bacterial export proteins, family 3 KW556_01990 PF01311 Bacterial export proteins, family 1 KW556_01995 PF01312 FlhB HrpN YscU SpaS Family KW556_02000 PF00771 FHIPEP family KW556_02005 PF00158 Sigma-54 interaction domain KW556_02005 PF00072 Response regulator receiver domain KW556_02005 PF02954 Bacterial regulatory protein, Fis family KW556_02010 PF02049 Flagellar hook-basal body complex protein FliE KW556_02015 PF01514 Secretory protein of YscJ/FliF family KW556_02015 PF08345 Flagellar M-ring protein C-terminal KW556_02020 PF01706 FliG C-terminal domain KW556_02020 PF14841 FliG middle domain KW556_02020 PF14842 FliG N-terminal domain KW556_02030 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW556_02030 PF18269 T3SS EscN ATPase C-terminal domain KW556_02055 PF00460 Flagella basal body rod protein KW556_02060 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_02060 PF00460 Flagella basal body rod protein KW556_02065 PF03963 Flagellar hook capping protein - N-terminal region KW556_02065 PF13860 FlgD Ig-like domain KW556_02065 PF13861 FlgD Tudor-like domain KW556_02070 PF00460 Flagella basal body rod protein KW556_02070 PF07559 Flagellar basal body protein FlaE KW556_02070 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_02075 PF00460 Flagella basal body rod protein KW556_02075 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_02080 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_02080 PF00460 Flagella basal body rod protein KW556_02085 PF02107 Flagellar L-ring protein KW556_02090 PF02119 Flagellar P-ring protein KW556_02100 PF00460 Flagella basal body rod protein KW556_02100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_02105 PF00669 Bacterial flagellin N-terminal helical region KW556_02125 PF07196 Flagellin hook IN motif KW556_02125 PF07195 Flagellar hook-associated protein 2 C-terminus KW556_02125 PF02465 Flagellar hook-associated protein 2 N-terminus KW556_02130 PF02561 Flagellar protein FliS KW556_02150 PF04542 Sigma-70 region 2 KW556_02150 PF04545 Sigma-70, region 4 KW556_02155 PF01618 MotA/TolQ/ExbB proton channel family KW556_02160 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW556_02160 PF00691 OmpA family KW556_02170 PF01464 Transglycosylase SLT domain KW556_02170 PF01476 LysM domain KW556_02175 PF02381 MraZ protein, putative antitoxin-like KW556_02180 PF01795 MraW methylase family KW556_02185 PF04999 Cell division protein FtsL KW556_02190 PF00905 Penicillin binding protein transpeptidase domain KW556_02190 PF03717 Penicillin-binding Protein dimerisation domain KW556_02195 PF02875 Mur ligase family, glutamate ligase domain KW556_02195 PF08245 Mur ligase middle domain KW556_02195 PF01225 Mur ligase family, catalytic domain KW556_02200 PF01225 Mur ligase family, catalytic domain KW556_02200 PF02875 Mur ligase family, glutamate ligase domain KW556_02200 PF08245 Mur ligase middle domain KW556_02205 PF00953 Glycosyl transferase family 4 KW556_02205 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KW556_02210 PF02875 Mur ligase family, glutamate ligase domain KW556_02210 PF08245 Mur ligase middle domain KW556_02215 PF01098 Cell cycle protein KW556_02220 PF04101 Glycosyltransferase family 28 C-terminal domain KW556_02220 PF03033 Glycosyltransferase family 28 N-terminal domain KW556_02225 PF01225 Mur ligase family, catalytic domain KW556_02225 PF08245 Mur ligase middle domain KW556_02225 PF02875 Mur ligase family, glutamate ligase domain KW556_02230 PF08478 POTRA domain, FtsQ-type KW556_02230 PF03799 Cell division protein FtsQ KW556_02235 PF02491 SHS2 domain inserted in FTSA KW556_02240 PF00091 Tubulin/FtsZ family, GTPase domain KW556_02240 PF12327 FtsZ family, C-terminal domain KW556_02245 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase KW556_02255 PF02810 SEC-C motif KW556_02255 PF01043 SecA preprotein cross-linking domain KW556_02255 PF07517 SecA DEAD-like domain KW556_02255 PF07516 SecA Wing and Scaffold domain KW556_02260 PF00293 NUDIX domain KW556_02265 PF03884 DNA gyrase inhibitor YacG KW556_02270 PF07072 Cell division protein KW556_02275 PF01121 Dephospho-CoA kinase KW556_02280 PF06750 Bacterial Peptidase A24 N-terminal domain KW556_02280 PF01478 Type IV leader peptidase family KW556_02285 PF00482 Type II secretion system (T2SS), protein F KW556_02290 PF00437 Type II/IV secretion system protein KW556_02290 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KW556_02300 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KW556_02300 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KW556_02310 PF01510 N-acetylmuramoyl-L-alanine amidase KW556_02315 PF00392 Bacterial regulatory proteins, gntR family KW556_02315 PF07729 FCD domain KW556_02320 PF17831 Pyruvate dehydrogenase E1 component middle domain KW556_02320 PF00456 Transketolase, thiamine diphosphate binding domain KW556_02325 PF02817 e3 binding domain KW556_02325 PF00364 Biotin-requiring enzyme KW556_02325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW556_02330 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW556_02330 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_02335 PF03707 Bacterial signalling protein N terminal repeat KW556_02335 PF00990 Diguanylate cyclase, GGDEF domain KW556_02335 PF00563 EAL domain KW556_02340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_02340 PF00672 HAMP domain KW556_02340 PF12729 Four helix bundle sensory module for signal transduction KW556_02345 PF01734 Patatin-like phospholipase KW556_02350 PF00330 Aconitase family (aconitate hydratase) KW556_02350 PF06434 Aconitate hydratase 2 N-terminus KW556_02350 PF11791 Aconitate B N-terminal domain KW556_02355 PF12792 CSS motif domain associated with EAL KW556_02355 PF00563 EAL domain KW556_02365 PF07683 Cobalamin synthesis protein cobW C-terminal domain KW556_02365 PF02492 CobW/HypB/UreG, nucleotide-binding domain KW556_02370 PF00873 AcrB/AcrD/AcrF family KW556_02385 PF07690 Major Facilitator Superfamily KW556_02395 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KW556_02400 PF02152 Dihydroneopterin aldolase KW556_02405 PF02660 Glycerol-3-phosphate acyltransferase KW556_02465 PF05154 TM2 domain KW556_02495 PF02384 N-6 DNA Methylase KW556_02515 PF07670 Nucleoside recognition KW556_02540 PF00206 Lyase KW556_02540 PF14698 Argininosuccinate lyase C-terminal KW556_02545 PF00764 Arginosuccinate synthase KW556_02550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW556_02550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW556_02555 PF00696 Amino acid kinase family KW556_02560 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW556_02560 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW556_02565 PF07687 Peptidase dimerisation domain KW556_02565 PF01546 Peptidase family M20/M25/M40 KW556_02570 PF00311 Phosphoenolpyruvate carboxylase KW556_02575 PF01609 Transposase DDE domain KW556_02590 PF00990 Diguanylate cyclase, GGDEF domain KW556_02590 PF17151 Periplasmic sensor domain KW556_02600 PF06055 Exopolysaccharide synthesis, ExoD KW556_02610 PF00990 Diguanylate cyclase, GGDEF domain KW556_02615 PF00909 Ammonium Transporter Family KW556_02620 PF05433 Glycine zipper 2TM domain KW556_02625 PF00583 Acetyltransferase (GNAT) family KW556_02630 PF11756 Nitrous oxide-stimulated promoter KW556_02635 PF00557 Metallopeptidase family M24 KW556_02635 PF01321 Creatinase/Prolidase N-terminal domain KW556_02640 PF00392 Bacterial regulatory proteins, gntR family KW556_02645 PF01293 Phosphoenolpyruvate carboxykinase KW556_02650 PF01430 Hsp33 protein KW556_02655 PF01479 S4 domain KW556_02665 PF00293 NUDIX domain KW556_02670 PF01594 AI-2E family transporter KW556_02680 PF02954 Bacterial regulatory protein, Fis family KW556_02680 PF00989 PAS fold KW556_02680 PF00158 Sigma-54 interaction domain KW556_02685 PF00465 Iron-containing alcohol dehydrogenase KW556_02690 PF00391 PEP-utilising enzyme, mobile domain KW556_02690 PF05524 PEP-utilising enzyme, N-terminal KW556_02690 PF03610 PTS system fructose IIA component KW556_02690 PF00381 PTS HPr component phosphorylation site KW556_02695 PF02734 DAK2 domain KW556_02700 PF02733 Dak1 domain KW556_02705 PF00860 Permease family KW556_02710 PF00313 'Cold-shock' DNA-binding domain KW556_02725 PF16916 Dimerisation domain of Zinc Transporter KW556_02725 PF01545 Cation efflux family KW556_02735 PF00436 Single-strand binding protein family KW556_02740 PF00005 ABC transporter KW556_02740 PF17755 UvrA DNA-binding domain KW556_02740 PF17760 UvrA interaction domain KW556_02745 PF00990 Diguanylate cyclase, GGDEF domain KW556_02750 PF03922 OmpW family KW556_02755 PF00672 HAMP domain KW556_02755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_02770 PF02219 Methylenetetrahydrofolate reductase KW556_02780 PF03594 Benzoate membrane transport protein KW556_02785 PF07883 Cupin domain KW556_02785 PF01381 Helix-turn-helix KW556_02860 PF14659 Phage integrase, N-terminal SAM-like domain KW556_02860 PF00589 Phage integrase family KW556_02865 PF13356 Arm DNA-binding domain KW556_02865 PF00589 Phage integrase family KW556_02890 PF02397 Bacterial sugar transferase KW556_02910 PF02706 Chain length determinant protein KW556_02910 PF13807 G-rich domain on putative tyrosine kinase KW556_02910 PF13614 AAA domain KW556_02915 PF09721 Transmembrane exosortase (Exosortase_EpsH) KW556_02930 PF00534 Glycosyl transferases group 1 KW556_02930 PF13439 Glycosyltransferase Family 4 KW556_02935 PF00150 Cellulase (glycosyl hydrolase family 5) KW556_02955 PF01501 Glycosyl transferase family 8 KW556_02965 PF01050 Mannose-6-phosphate isomerase KW556_02965 PF00483 Nucleotidyl transferase KW556_02970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW556_02970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW556_02970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW556_02970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW556_02975 PF05598 Transposase domain (DUF772) KW556_02975 PF01609 Transposase DDE domain KW556_02980 PF13808 DDE_Tnp_1-associated KW556_02980 PF01609 Transposase DDE domain KW556_02985 PF00816 H-NS histone family KW556_02995 PF13148 Protein of unknown function (DUF3987) KW556_03015 PF09588 YqaJ-like viral recombinase domain KW556_03045 PF04002 RadC-like JAB domain KW556_03090 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A KW556_03095 PF12161 HsdM N-terminal domain KW556_03095 PF02384 N-6 DNA Methylase KW556_03100 PF01420 Type I restriction modification DNA specificity domain KW556_03110 PF12008 Type I restriction and modification enzyme - subunit R C terminal KW556_03110 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW556_03110 PF18766 SWI2/SNF2 ATPase KW556_03115 PF02810 SEC-C motif KW556_03115 PF03695 Uncharacterised protein family (UPF0149) KW556_03125 PF06965 Na+/H+ antiporter 1 KW556_03125 PF13462 Thioredoxin KW556_03140 PF00202 Aminotransferase class-III KW556_03145 PF00654 Voltage gated chloride channel KW556_03155 PF01521 Iron-sulphur cluster biosynthesis KW556_03160 PF03553 Na+/H+ antiporter family KW556_03200 PF08323 Starch synthase catalytic domain KW556_03200 PF00534 Glycosyl transferases group 1 KW556_03205 PF00483 Nucleotidyl transferase KW556_03210 PF05175 Methyltransferase small domain KW556_03210 PF08468 Methyltransferase small domain N-terminal KW556_03215 PF00701 Dihydrodipicolinate synthetase family KW556_03225 PF01865 Protein of unknown function DUF47 KW556_03230 PF01384 Phosphate transporter family KW556_03235 PF00696 Amino acid kinase family KW556_03235 PF00742 Homoserine dehydrogenase KW556_03235 PF03447 Homoserine dehydrogenase, NAD binding domain KW556_03240 PF01053 Cys/Met metabolism PLP-dependent enzyme KW556_03245 PF01340 Met Apo-repressor, MetJ KW556_03250 PF12833 Helix-turn-helix domain KW556_03250 PF02311 AraC-like ligand binding domain KW556_03255 PF01588 Putative tRNA binding domain KW556_03260 PF03222 Tryptophan/tyrosine permease family KW556_03270 PF00459 Inositol monophosphatase family KW556_03275 PF00293 NUDIX domain KW556_03280 PF13419 Haloacid dehalogenase-like hydrolase KW556_03295 PF14602 Hexapeptide repeat of succinyl-transferase KW556_03295 PF12464 Maltose acetyltransferase KW556_03300 PF13194 Domain of unknown function (DUF4010) KW556_03305 PF18416 N-acetylglucosamine binding protein domain 2 KW556_03305 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KW556_03310 PF00672 HAMP domain KW556_03310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_03310 PF17200 Single Cache domain 2 KW556_03320 PF02350 UDP-N-acetylglucosamine 2-epimerase KW556_03325 PF13632 Glycosyl transferase family group 2 KW556_03325 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KW556_03335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KW556_03335 PF13632 Glycosyl transferase family group 2 KW556_03340 PF13283 Bacteriophage N adsorption protein A C-term KW556_03345 PF14488 Domain of unknown function (DUF4434) KW556_03355 PF14883 Hypothetical glycosyl hydrolase family 13 KW556_03355 PF01522 Polysaccharide deacetylase KW556_03360 PF00535 Glycosyl transferase family 2 KW556_03400 PF11230 Protein of unknown function (DUF3029) KW556_03405 PF04055 Radical SAM superfamily KW556_03415 PF03466 LysR substrate binding domain KW556_03415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_03420 PF00155 Aminotransferase class I and II KW556_03425 PF02583 Metal-sensitive transcriptional repressor KW556_03435 PF04012 PspA/IM30 family KW556_03450 PF01541 GIY-YIG catalytic domain KW556_03460 PF00892 EamA-like transporter family KW556_03465 PF03167 Uracil DNA glycosylase superfamily KW556_03470 PF00892 EamA-like transporter family KW556_03475 PF03466 LysR substrate binding domain KW556_03475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_03480 PF00950 ABC 3 transport family KW556_03485 PF00005 ABC transporter KW556_03490 PF01297 Zinc-uptake complex component A periplasmic KW556_03510 PF01476 LysM domain KW556_03510 PF08525 Opacity-associated protein A N-terminal motif KW556_03510 PF01551 Peptidase family M23 KW556_03515 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_03520 PF04222 Protein of unknown function (DUF416) KW556_03535 PF02028 BCCT, betaine/carnitine/choline family transporter KW556_03540 PF01966 HD domain KW556_03540 PF12627 Probable RNA and SrmB- binding site of polymerase A KW556_03540 PF01743 Poly A polymerase head domain KW556_03545 PF10576 Iron-sulfur binding domain of endonuclease III KW556_03545 PF00633 Helix-hairpin-helix motif KW556_03545 PF00730 HhH-GPD superfamily base excision DNA repair protein KW556_03545 PF14815 NUDIX domain KW556_03550 PF04362 Bacterial Fe(2+) trafficking KW556_03555 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain KW556_03555 PF01464 Transglycosylase SLT domain KW556_03560 PF04076 Bacterial OB fold (BOF) protein KW556_03565 PF00657 GDSL-like Lipase/Acylhydrolase KW556_03570 PF00691 OmpA family KW556_03570 PF01389 OmpA-like transmembrane domain KW556_03575 PF00990 Diguanylate cyclase, GGDEF domain KW556_03580 PF08206 Ribonuclease B OB domain KW556_03580 PF00773 RNB domain KW556_03580 PF08461 Ribonuclease R winged-helix domain KW556_03580 PF17876 Cold shock domain KW556_03580 PF00575 S1 RNA binding domain KW556_03585 PF00588 SpoU rRNA Methylase family KW556_03585 PF08032 RNA 2'-O ribose methyltransferase substrate binding KW556_03595 PF13673 Acetyltransferase (GNAT) domain KW556_03600 PF00271 Helicase conserved C-terminal domain KW556_03600 PF00270 DEAD/DEAH box helicase KW556_03605 PF05175 Methyltransferase small domain KW556_03610 PF05525 Branched-chain amino acid transport protein KW556_03615 PF05525 Branched-chain amino acid transport protein KW556_03630 PF01475 Ferric uptake regulator family KW556_03635 PF01207 Dihydrouridine synthase (Dus) KW556_03640 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_03640 PF08447 PAS fold KW556_03650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_03660 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_03665 PF10952 Protein of unknown function (DUF2753) KW556_03670 PF00378 Enoyl-CoA hydratase/isomerase KW556_03685 PF00106 short chain dehydrogenase KW556_03690 PF04073 Aminoacyl-tRNA editing domain KW556_03690 PF03129 Anticodon binding domain KW556_03690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW556_03695 PF05958 tRNA (Uracil-5-)-methyltransferase KW556_03695 PF01938 TRAM domain KW556_03700 PF01609 Transposase DDE domain KW556_03700 PF13006 Insertion element 4 transposase N-terminal KW556_03710 PF02470 MlaD protein KW556_03715 PF04403 Paraquat-inducible protein A KW556_03720 PF17209 Hfq protein KW556_03725 PF13419 Haloacid dehalogenase-like hydrolase KW556_03735 PF00563 EAL domain KW556_03735 PF00360 Phytochrome region KW556_03735 PF00990 Diguanylate cyclase, GGDEF domain KW556_03735 PF01590 GAF domain KW556_03740 PF17876 Cold shock domain KW556_03740 PF08206 Ribonuclease B OB domain KW556_03740 PF00773 RNB domain KW556_03745 PF03466 LysR substrate binding domain KW556_03745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_03750 PF00765 Autoinducer synthase KW556_03755 PF03472 Autoinducer binding domain KW556_03755 PF00196 Bacterial regulatory proteins, luxR family KW556_03760 PF01810 LysE type translocator KW556_03765 PF00672 HAMP domain KW556_03765 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_03770 PF07499 RuvA, C-terminal domain KW556_03770 PF01330 RuvA N terminal domain KW556_03775 PF17864 RuvB AAA lid domain KW556_03775 PF05496 Holliday junction DNA helicase RuvB P-loop domain KW556_03775 PF05491 RuvB C-terminal winged helix domain KW556_03780 PF01654 Cytochrome bd terminal oxidase subunit I KW556_03785 PF02322 Cytochrome bd terminal oxidase subunit II KW556_03790 PF08173 Membrane bound YbgT-like protein KW556_03795 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) KW556_03800 PF03061 Thioesterase superfamily KW556_03805 PF01618 MotA/TolQ/ExbB proton channel family KW556_03810 PF02472 Biopolymer transport protein ExbD/TolR KW556_03820 PF04052 TolB amino-terminal domain KW556_03820 PF07676 WD40-like Beta Propeller Repeat KW556_03825 PF00691 OmpA family KW556_03830 PF16331 TolA binding protein trimerisation KW556_03830 PF13174 Tetratricopeptide repeat KW556_03900 PF00209 Sodium:neurotransmitter symporter family KW556_03910 PF00209 Sodium:neurotransmitter symporter family KW556_03930 PF07690 Major Facilitator Superfamily KW556_03940 PF01037 Lrp/AsnC ligand binding domain KW556_03955 PF00293 NUDIX domain KW556_03955 PF13344 Haloacid dehalogenase-like hydrolase KW556_03965 PF01641 SelR domain KW556_03970 PF00128 Alpha amylase, catalytic domain KW556_03970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KW556_03975 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KW556_03975 PF02806 Alpha amylase, C-terminal all-beta domain KW556_03975 PF00128 Alpha amylase, catalytic domain KW556_03980 PF02446 4-alpha-glucanotransferase KW556_03985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW556_03985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW556_03990 PF01263 Aldose 1-epimerase KW556_03995 PF02445 Quinolinate synthetase A protein KW556_04000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_04000 PF00672 HAMP domain KW556_04005 PF01957 NfeD-like C-terminal, partner-binding KW556_04010 PF01145 SPFH domain / Band 7 family KW556_04010 PF16200 C-terminal region of band_7 KW556_04015 PF10414 Sirohaem synthase dimerisation region KW556_04015 PF14824 Sirohaem biosynthesis protein central KW556_04015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW556_04020 PF01507 Phosphoadenosine phosphosulfate reductase family KW556_04025 PF00009 Elongation factor Tu GTP binding domain KW556_04030 PF02080 TrkA-C domain KW556_04030 PF03600 Citrate transporter KW556_04045 PF04607 Region found in RelA / SpoT proteins KW556_04050 PF08447 PAS fold KW556_04050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_04070 PF00005 ABC transporter KW556_04085 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) KW556_04100 PF00719 Inorganic pyrophosphatase KW556_04105 PF11849 Domain of unknown function (DUF3369) KW556_04115 PF00893 Small Multidrug Resistance protein KW556_04120 PF00893 Small Multidrug Resistance protein KW556_04125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW556_04130 PF00912 Transglycosylase KW556_04130 PF00905 Penicillin binding protein transpeptidase domain KW556_04130 PF14814 Bifunctional transglycosylase second domain KW556_04135 PF00270 DEAD/DEAH box helicase KW556_04135 PF04408 Helicase associated domain (HA2) KW556_04135 PF00271 Helicase conserved C-terminal domain KW556_04135 PF08482 ATP-dependent helicase C-terminal KW556_04145 PF03749 Sugar fermentation stimulation protein RE domain KW556_04145 PF17746 SfsA N-terminal OB domain KW556_04150 PF01258 Prokaryotic dksA/traR C4-type zinc finger KW556_04155 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW556_04160 PF01743 Poly A polymerase head domain KW556_04160 PF12626 Polymerase A arginine-rich C-terminus KW556_04160 PF12627 Probable RNA and SrmB- binding site of polymerase A KW556_04165 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KW556_04170 PF02548 Ketopantoate hydroxymethyltransferase KW556_04175 PF02569 Pantoate-beta-alanine ligase KW556_04185 PF00375 Sodium:dicarboxylate symporter family KW556_04205 PF01869 BadF/BadG/BcrA/BcrD ATPase family KW556_04210 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component KW556_04215 PF01061 ABC-2 type transporter KW556_04220 PF00005 ABC transporter KW556_04225 PF00156 Phosphoribosyl transferase domain KW556_04230 PF00440 Bacterial regulatory proteins, tetR family KW556_04235 PF02441 Flavoprotein KW556_04240 PF08245 Mur ligase middle domain KW556_04240 PF02875 Mur ligase family, glutamate ligase domain KW556_04240 PF01225 Mur ligase family, catalytic domain KW556_04245 PF01569 PAP2 superfamily KW556_04250 PF01370 NAD dependent epimerase/dehydratase family KW556_04255 PF00175 Oxidoreductase NAD-binding domain KW556_04255 PF00042 Globin KW556_04255 PF00970 Oxidoreductase FAD-binding domain KW556_04260 PF03063 Prismane/CO dehydrogenase family KW556_04265 PF00210 Ferritin-like domain KW556_04270 PF01510 N-acetylmuramoyl-L-alanine amidase KW556_04275 PF07308 Protein of unknown function (DUF1456) KW556_04280 PF00672 HAMP domain KW556_04280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_04280 PF00512 His Kinase A (phospho-acceptor) domain KW556_04280 PF01627 Hpt domain KW556_04280 PF00072 Response regulator receiver domain KW556_04280 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW556_04285 PF05958 tRNA (Uracil-5-)-methyltransferase KW556_04285 PF01938 TRAM domain KW556_04290 PF13291 ACT domain KW556_04290 PF02824 TGS domain KW556_04290 PF04607 Region found in RelA / SpoT proteins KW556_04295 PF03819 MazG nucleotide pyrophosphohydrolase domain KW556_04300 PF00117 Glutamine amidotransferase class-I KW556_04300 PF06418 CTP synthase N-terminus KW556_04305 PF03952 Enolase, N-terminal domain KW556_04305 PF00113 Enolase, C-terminal TIM barrel domain KW556_04370 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ KW556_04380 PF00005 ABC transporter KW556_04380 PF12848 ABC transporter KW556_04385 PF00571 CBS domain KW556_04385 PF01368 DHH family KW556_04385 PF01743 Poly A polymerase head domain KW556_04385 PF02272 DHHA1 domain KW556_04400 PF00392 Bacterial regulatory proteins, gntR family KW556_04400 PF00155 Aminotransferase class I and II KW556_04410 PF01810 LysE type translocator KW556_04415 PF01177 Asp/Glu/Hydantoin racemase KW556_04425 PF04074 YhcH/YjgK/YiaL KW556_04430 PF00871 Acetokinase family KW556_04435 PF00924 Mechanosensitive ion channel KW556_04440 PF17969 L,D-transpeptidase C-terminal domain KW556_04440 PF03734 L,D-transpeptidase catalytic domain KW556_04450 PF00474 Sodium:solute symporter family KW556_04455 PF04977 Septum formation initiator KW556_04460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KW556_04465 PF02542 YgbB family KW556_04470 PF01142 tRNA pseudouridine synthase D (TruD) KW556_04475 PF01975 Survival protein SurE KW556_04485 PF09335 SNARE associated Golgi protein KW556_04490 PF01551 Peptidase family M23 KW556_04490 PF01476 LysM domain KW556_04495 PF00140 Sigma-70 factor, region 1.2 KW556_04495 PF04542 Sigma-70 region 2 KW556_04495 PF04539 Sigma-70 region 3 KW556_04495 PF04545 Sigma-70, region 4 KW556_04500 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW556_04510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_04510 PF03466 LysR substrate binding domain KW556_04515 PF04371 Porphyromonas-type peptidyl-arginine deiminase KW556_04520 PF01425 Amidase KW556_04540 PF00753 Metallo-beta-lactamase superfamily KW556_04550 PF00271 Helicase conserved C-terminal domain KW556_04550 PF00270 DEAD/DEAH box helicase KW556_04555 PF00990 Diguanylate cyclase, GGDEF domain KW556_04565 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase KW556_04575 PF00445 Ribonuclease T2 family KW556_04580 PF03060 Nitronate monooxygenase KW556_04610 PF09297 NADH pyrophosphatase zinc ribbon domain KW556_04610 PF00293 NUDIX domain KW556_04610 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain KW556_04620 PF00672 HAMP domain KW556_04620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_04620 PF00512 His Kinase A (phospho-acceptor) domain KW556_04625 PF00072 Response regulator receiver domain KW556_04625 PF00486 Transcriptional regulatory protein, C terminal KW556_04645 PF03710 Glutamate-ammonia ligase adenylyltransferase KW556_04645 PF08335 GlnD PII-uridylyltransferase KW556_04650 PF00860 Permease family KW556_04660 PF12848 ABC transporter KW556_04660 PF00005 ABC transporter KW556_04675 PF01464 Transglycosylase SLT domain KW556_04690 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) KW556_04695 PF01370 NAD dependent epimerase/dehydratase family KW556_04700 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KW556_04700 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KW556_04700 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KW556_04710 PF00005 ABC transporter KW556_04710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_04715 PF00005 ABC transporter KW556_04715 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_04725 PF12911 N-terminal TM domain of oligopeptide transport permease C KW556_04725 PF00528 Binding-protein-dependent transport system inner membrane component KW556_04730 PF00528 Binding-protein-dependent transport system inner membrane component KW556_04735 PF03734 L,D-transpeptidase catalytic domain KW556_04735 PF17969 L,D-transpeptidase C-terminal domain KW556_04740 PF01343 Peptidase family S49 KW556_04745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW556_04745 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_04750 PF00881 Nitroreductase family KW556_04755 PF14602 Hexapeptide repeat of succinyl-transferase KW556_04755 PF12464 Maltose acetyltransferase KW556_04765 PF08240 Alcohol dehydrogenase GroES-like domain KW556_04765 PF00107 Zinc-binding dehydrogenase KW556_04770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_04770 PF03466 LysR substrate binding domain KW556_04775 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KW556_04775 PF00367 phosphotransferase system, EIIB KW556_04775 PF02378 Phosphotransferase system, EIIC KW556_04780 PF00474 Sodium:solute symporter family KW556_04785 PF06196 Protein of unknown function (DUF997) KW556_04790 PF00289 Biotin carboxylase, N-terminal domain KW556_04790 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KW556_04790 PF02785 Biotin carboxylase C-terminal domain KW556_04795 PF00364 Biotin-requiring enzyme KW556_04800 PF01220 Dehydroquinase class II KW556_04805 PF16177 Acetyl-coenzyme A synthetase N-terminus KW556_04805 PF00501 AMP-binding enzyme KW556_04805 PF13193 AMP-binding enzyme C-terminal domain KW556_04815 PF00990 Diguanylate cyclase, GGDEF domain KW556_04815 PF00563 EAL domain KW556_04815 PF03707 Bacterial signalling protein N terminal repeat KW556_04825 PF02613 Nitrate reductase delta subunit KW556_04830 PF00384 Molybdopterin oxidoreductase KW556_04830 PF18364 Molybdopterin oxidoreductase N-terminal domain KW556_04830 PF01568 Molydopterin dinucleotide binding domain KW556_04835 PF03264 NapC/NirT cytochrome c family, N-terminal region KW556_04840 PF00072 Response regulator receiver domain KW556_04840 PF00486 Transcriptional regulatory protein, C terminal KW556_04850 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW556_04855 PF01627 Hpt domain KW556_04855 PF00672 HAMP domain KW556_04855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_04855 PF00512 His Kinase A (phospho-acceptor) domain KW556_04855 PF00072 Response regulator receiver domain KW556_04865 PF00464 Serine hydroxymethyltransferase KW556_04870 PF03477 ATP cone domain KW556_04875 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW556_04875 PF01872 RibD C-terminal domain KW556_04880 PF00677 Lumazine binding domain KW556_04885 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KW556_04885 PF00925 GTP cyclohydrolase II KW556_04890 PF00885 6,7-dimethyl-8-ribityllumazine synthase KW556_04895 PF01029 NusB family KW556_04900 PF00586 AIR synthase related protein, N-terminal domain KW556_04900 PF02769 AIR synthase related protein, C-terminal domain KW556_04905 PF04608 Phosphatidylglycerophosphatase A KW556_04910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_04910 PF00005 ABC transporter KW556_04915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_04920 PF00528 Binding-protein-dependent transport system inner membrane component KW556_04925 PF00528 Binding-protein-dependent transport system inner membrane component KW556_04925 PF12911 N-terminal TM domain of oligopeptide transport permease C KW556_04930 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KW556_04930 PF02779 Transketolase, pyrimidine binding domain KW556_04930 PF02780 Transketolase, C-terminal domain KW556_04935 PF00348 Polyprenyl synthetase KW556_04940 PF02609 Exonuclease VII small subunit KW556_04945 PF01618 MotA/TolQ/ExbB proton channel family KW556_04950 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW556_04950 PF00691 OmpA family KW556_04955 PF03449 Transcription elongation factor, N-terminal KW556_04955 PF01272 Transcription elongation factor, GreA/GreB, C-term KW556_04965 PF01985 CRS1 / YhbY (CRM) domain KW556_04970 PF01728 FtsJ-like methyltransferase KW556_04975 PF01434 Peptidase family M41 KW556_04975 PF06480 FtsH Extracellular KW556_04975 PF17862 AAA+ lid domain KW556_04975 PF00004 ATPase family associated with various cellular activities (AAA) KW556_04980 PF00809 Pterin binding enzyme KW556_04985 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW556_04985 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW556_04985 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW556_04985 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW556_04990 PF00121 Triosephosphate isomerase KW556_04995 PF03840 Preprotein translocase SecG subunit KW556_05010 PF17384 RimP C-terminal SH3 domain KW556_05010 PF02576 RimP N-terminal domain KW556_05015 PF13184 NusA-like KH domain KW556_05015 PF08529 NusA N-terminal domain KW556_05015 PF00575 S1 RNA binding domain KW556_05020 PF04760 Translation initiation factor IF-2, N-terminal region KW556_05020 PF08364 Bacterial translation initiation factor IF-2 associated region KW556_05020 PF11987 Translation-initiation factor 2 KW556_05020 PF00009 Elongation factor Tu GTP binding domain KW556_05025 PF02033 Ribosome-binding factor A KW556_05030 PF09157 Pseudouridine synthase II TruB, C-terminal KW556_05030 PF16198 tRNA pseudouridylate synthase B C-terminal domain KW556_05030 PF01509 TruB family pseudouridylate synthase (N terminal domain) KW556_05035 PF00312 Ribosomal protein S15 KW556_05040 PF00575 S1 RNA binding domain KW556_05040 PF03725 3' exoribonuclease family, domain 2 KW556_05040 PF00013 KH domain KW556_05040 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KW556_05040 PF01138 3' exoribonuclease family, domain 1 KW556_05045 PF13443 Cro/C1-type HTH DNA-binding domain KW556_05055 PF00672 HAMP domain KW556_05055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_05055 PF00512 His Kinase A (phospho-acceptor) domain KW556_05055 PF01627 Hpt domain KW556_05055 PF00072 Response regulator receiver domain KW556_05055 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW556_05060 PF08329 Chitinase A, N-terminal domain KW556_05060 PF00704 Glycosyl hydrolases family 18 KW556_05065 PF00990 Diguanylate cyclase, GGDEF domain KW556_05065 PF08448 PAS fold KW556_05070 PF08329 Chitinase A, N-terminal domain KW556_05070 PF00704 Glycosyl hydrolases family 18 KW556_05075 PF17945 Beta/Gamma crystallin KW556_05075 PF12561 ToxR activated gene A lipoprotein domain KW556_05110 PF06483 Chitinase C KW556_05110 PF00704 Glycosyl hydrolases family 18 KW556_05115 PF01584 CheW-like domain KW556_05115 PF00072 Response regulator receiver domain KW556_05120 PF13472 GDSL-like Lipase/Acylhydrolase family KW556_05125 PF00005 ABC transporter KW556_05135 PF01370 NAD dependent epimerase/dehydratase family KW556_05135 PF08338 Domain of unknown function (DUF1731) KW556_05140 PF12792 CSS motif domain associated with EAL KW556_05140 PF00563 EAL domain KW556_05145 PF00155 Aminotransferase class I and II KW556_05150 PF02390 Putative methyltransferase KW556_05155 PF04320 Protein with unknown function (DUF469) KW556_05160 PF04960 Glutaminase KW556_05165 PF00581 Rhodanese-like domain KW556_05170 PF06004 Bacterial protein of unknown function (DUF903) KW556_05180 PF00994 Probable molybdopterin binding domain KW556_05195 PF06738 Putative threonine/serine exporter KW556_05200 PF12821 Threonine/Serine exporter, ThrE KW556_05205 PF00186 Dihydrofolate reductase KW556_05210 PF01507 Phosphoadenosine phosphosulfate reductase family KW556_05215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KW556_05215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KW556_05220 PF00667 FAD binding domain KW556_05220 PF00258 Flavodoxin KW556_05220 PF00175 Oxidoreductase NAD-binding domain KW556_05225 PF00152 tRNA synthetases class II (D, K and N) KW556_05225 PF01336 OB-fold nucleic acid binding domain KW556_05235 PF02743 Cache domain KW556_05235 PF00672 HAMP domain KW556_05235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_05240 PF03616 Sodium/glutamate symporter KW556_05245 PF17763 Glutaminase/Asparaginase C-terminal domain KW556_05245 PF00710 Asparaginase, N-terminal KW556_05250 PF07023 Protein of unknown function (DUF1315) KW556_05255 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW556_05255 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW556_05270 PF04055 Radical SAM superfamily KW556_05270 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KW556_05275 PF03099 Biotin/lipoate A/B protein ligase family KW556_05280 PF04359 Protein of unknown function (DUF493) KW556_05285 PF07943 Penicillin-binding protein 5, C-terminal domain KW556_05285 PF00768 D-alanyl-D-alanine carboxypeptidase KW556_05290 PF03330 Lytic transglycolase KW556_05290 PF05036 Sporulation related domain KW556_05295 PF13406 Transglycosylase SLT domain KW556_05300 PF01098 Cell cycle protein KW556_05305 PF03717 Penicillin-binding Protein dimerisation domain KW556_05305 PF00905 Penicillin binding protein transpeptidase domain KW556_05310 PF02590 Predicted SPOUT methyltransferase KW556_05320 PF01467 Cytidylyltransferase-like KW556_05335 PF00133 tRNA synthetases class I (I, L, M and V) KW556_05335 PF13603 Leucyl-tRNA synthetase, Domain 2 KW556_05335 PF08264 Anticodon-binding domain of tRNA KW556_05340 PF07295 Zinc-ribbon containing domain KW556_05345 PF01523 Putative modulator of DNA gyrase KW556_05350 PF01523 Putative modulator of DNA gyrase KW556_05355 PF00258 Flavodoxin KW556_05360 PF02899 Phage integrase, N-terminal SAM-like domain KW556_05360 PF00589 Phage integrase family KW556_05365 PF01741 Large-conductance mechanosensitive channel, MscL KW556_05375 PF17768 RecJ OB domain KW556_05375 PF02272 DHHA1 domain KW556_05375 PF01368 DHH family KW556_05380 PF13411 MerR HTH family regulatory protein KW556_05385 PF00795 Carbon-nitrogen hydrolase KW556_05390 PF00571 CBS domain KW556_05390 PF03471 Transporter associated domain KW556_05395 PF02130 Uncharacterized protein family UPF0054 KW556_05400 PF02562 PhoH-like protein KW556_05405 PF01938 TRAM domain KW556_05405 PF04055 Radical SAM superfamily KW556_05405 PF00919 Uncharacterized protein family UPF0004 KW556_05410 PF01494 FAD binding domain KW556_05415 PF00857 Isochorismatase family KW556_05420 PF00313 'Cold-shock' DNA-binding domain KW556_05425 PF05230 MASE2 domain KW556_05425 PF00990 Diguanylate cyclase, GGDEF domain KW556_05430 PF03466 LysR substrate binding domain KW556_05430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_05440 PF13419 Haloacid dehalogenase-like hydrolase KW556_05450 PF00563 EAL domain KW556_05450 PF05231 MASE1 KW556_05450 PF08447 PAS fold KW556_05450 PF08448 PAS fold KW556_05450 PF13426 PAS domain KW556_05450 PF00990 Diguanylate cyclase, GGDEF domain KW556_05460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW556_05460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_05470 PF01132 Elongation factor P (EF-P) OB domain KW556_05470 PF08207 Elongation factor P (EF-P) KOW-like domain KW556_05470 PF09285 Elongation factor P, C-terminal KW556_05480 PF00478 IMP dehydrogenase / GMP reductase domain KW556_05490 PF00512 His Kinase A (phospho-acceptor) domain KW556_05490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_05490 PF08521 Two-component sensor kinase N-terminal KW556_05495 PF00072 Response regulator receiver domain KW556_05495 PF00486 Transcriptional regulatory protein, C terminal KW556_05505 PF01609 Transposase DDE domain KW556_05515 PF00106 short chain dehydrogenase KW556_05525 PF00501 AMP-binding enzyme KW556_05540 PF01266 FAD dependent oxidoreductase KW556_05550 PF00440 Bacterial regulatory proteins, tetR family KW556_05550 PF17932 Tetracyclin repressor-like, C-terminal domain KW556_05555 PF06224 Winged helix DNA-binding domain KW556_05565 PF07687 Peptidase dimerisation domain KW556_05565 PF01546 Peptidase family M20/M25/M40 KW556_05570 PF07670 Nucleoside recognition KW556_05575 PF07670 Nucleoside recognition KW556_05580 PF02313 Fumarate reductase subunit D KW556_05585 PF02300 Fumarate reductase subunit C KW556_05590 PF13183 4Fe-4S dicluster domain KW556_05590 PF13085 2Fe-2S iron-sulfur cluster binding domain KW556_05595 PF02910 Fumarate reductase flavoprotein C-term KW556_05595 PF00890 FAD binding domain KW556_05615 PF03009 Glycerophosphoryl diester phosphodiesterase family KW556_05620 PF00924 Mechanosensitive ion channel KW556_05620 PF12795 Mechanosensitive ion channel porin domain KW556_05620 PF12794 Mechanosensitive ion channel inner membrane domain 1 KW556_05630 PF01551 Peptidase family M23 KW556_05630 PF01476 LysM domain KW556_05630 PF08525 Opacity-associated protein A N-terminal motif KW556_05640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_05640 PF03466 LysR substrate binding domain KW556_05655 PF01609 Transposase DDE domain KW556_05660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_05660 PF02743 Cache domain KW556_05660 PF00672 HAMP domain KW556_05665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_05665 PF03466 LysR substrate binding domain KW556_05670 PF00905 Penicillin binding protein transpeptidase domain KW556_05670 PF17092 Penicillin-binding protein OB-like domain KW556_05670 PF00912 Transglycosylase KW556_05675 PF11104 Type IV pilus assembly protein PilM; KW556_05695 PF03958 Bacterial type II/III secretion system short domain KW556_05695 PF07660 Secretin and TonB N terminus short domain KW556_05695 PF11741 AMIN domain KW556_05695 PF00263 Bacterial type II and III secretion system protein KW556_05700 PF01202 Shikimate kinase KW556_05705 PF01761 3-dehydroquinate synthase KW556_05715 PF02086 D12 class N6 adenine-specific DNA methyltransferase KW556_05720 PF00834 Ribulose-phosphate 3 epimerase family KW556_05725 PF13419 Haloacid dehalogenase-like hydrolase KW556_05730 PF00579 tRNA synthetases class I (W and Y) KW556_05740 PF00117 Glutamine amidotransferase class-I KW556_05745 PF00202 Aminotransferase class-III KW556_05750 PF04958 Arginine N-succinyltransferase beta subunit KW556_05755 PF00171 Aldehyde dehydrogenase family KW556_05770 PF13419 Haloacid dehalogenase-like hydrolase KW556_05775 PF07690 Major Facilitator Superfamily KW556_05780 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KW556_05780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_05780 PF10371 Domain of unknown function KW556_05780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KW556_05780 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KW556_05785 PF16657 Maltogenic Amylase, C-terminal domain KW556_05785 PF00128 Alpha amylase, catalytic domain KW556_05795 PF04266 ASCH domain KW556_05800 PF00027 Cyclic nucleotide-binding domain KW556_05800 PF07885 Ion channel KW556_05805 PF01048 Phosphorylase superfamily KW556_05810 PF04973 Nicotinamide mononucleotide transporter KW556_05815 PF03600 Citrate transporter KW556_05815 PF02080 TrkA-C domain KW556_05860 PF01926 50S ribosome-binding GTPase KW556_05860 PF06071 Protein of unknown function (DUF933) KW556_05865 PF01195 Peptidyl-tRNA hydrolase KW556_05870 PF02872 5'-nucleotidase, C-terminal domain KW556_05870 PF00149 Calcineurin-like phosphoesterase KW556_05875 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KW556_05875 PF14572 Phosphoribosyl synthetase-associated domain KW556_05885 PF00288 GHMP kinases N terminal domain KW556_05885 PF08544 GHMP kinases C terminal KW556_05890 PF03550 Outer membrane lipoprotein LolB KW556_05895 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KW556_05895 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KW556_05895 PF01488 Shikimate / quinate 5-dehydrogenase KW556_05900 PF03462 PCRF domain KW556_05900 PF00472 RF-1 domain KW556_05905 PF13847 Methyltransferase domain KW556_05905 PF17827 PrmC N-terminal domain KW556_05915 PF13369 Transglutaminase-like superfamily KW556_05920 PF00793 DAHP synthetase I family KW556_05925 PF01228 Glycine radical KW556_05935 PF03167 Uracil DNA glycosylase superfamily KW556_05950 PF01161 Phosphatidylethanolamine-binding protein KW556_05960 PF01609 Transposase DDE domain KW556_05970 PF00691 OmpA family KW556_05970 PF04972 BON domain KW556_06000 PF00709 Adenylosuccinate synthetase KW556_06015 PF00155 Aminotransferase class I and II KW556_06020 PF07690 Major Facilitator Superfamily KW556_06025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_06025 PF03466 LysR substrate binding domain KW556_06030 PF00106 short chain dehydrogenase KW556_06035 PF01343 Peptidase family S49 KW556_06035 PF08496 Peptidase family S49 N-terminal KW556_06040 PF07690 Major Facilitator Superfamily KW556_06045 PF00990 Diguanylate cyclase, GGDEF domain KW556_06050 PF02635 DsrE/DsrF-like family KW556_06060 PF12838 4Fe-4S dicluster domain KW556_06065 PF16325 Peptidase family U32 C-terminal domain KW556_06065 PF01136 Peptidase family U32 KW556_06075 PF03707 Bacterial signalling protein N terminal repeat KW556_06075 PF00990 Diguanylate cyclase, GGDEF domain KW556_06075 PF00563 EAL domain KW556_06090 PF00360 Phytochrome region KW556_06090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_06090 PF01590 GAF domain KW556_06090 PF08446 PAS fold KW556_06090 PF00512 His Kinase A (phospho-acceptor) domain KW556_06100 PF00665 Integrase core domain KW556_06105 PF01695 IstB-like ATP binding protein KW556_06155 PF01609 Transposase DDE domain KW556_06155 PF05598 Transposase domain (DUF772) KW556_06165 PF00440 Bacterial regulatory proteins, tetR family KW556_06170 PF13533 Biotin-lipoyl like KW556_06180 PF00005 ABC transporter KW556_06195 PF00239 Resolvase, N terminal domain KW556_06195 PF02796 Helix-turn-helix domain of resolvase KW556_06225 PF00816 H-NS histone family KW556_06240 PF09722 Protein of unknown function (DUF2384) KW556_06245 PF01219 Prokaryotic diacylglycerol kinase KW556_06250 PF08019 Phosphoethanolamine transferase EptA/EptB KW556_06250 PF00884 Sulfatase KW556_06255 PF08019 Phosphoethanolamine transferase EptA/EptB KW556_06255 PF00884 Sulfatase KW556_06270 PF00072 Response regulator receiver domain KW556_06270 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW556_06270 PF00672 HAMP domain KW556_06270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_06270 PF00512 His Kinase A (phospho-acceptor) domain KW556_06270 PF01627 Hpt domain KW556_06295 PF04996 Succinylarginine dihydrolase KW556_06300 PF08272 Topoisomerase I zinc-ribbon-like KW556_06300 PF01131 DNA topoisomerase KW556_06300 PF01751 Toprim domain KW556_06300 PF01396 Topoisomerase DNA binding C4 zinc finger KW556_06315 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_06315 PF08447 PAS fold KW556_06320 PF02838 Glycosyl hydrolase family 20, domain 2 KW556_06320 PF00728 Glycosyl hydrolase family 20, catalytic domain KW556_06325 PF01869 BadF/BadG/BcrA/BcrD ATPase family KW556_06335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_06335 PF00005 ABC transporter KW556_06340 PF00005 ABC transporter KW556_06340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_06345 PF12911 N-terminal TM domain of oligopeptide transport permease C KW556_06345 PF00528 Binding-protein-dependent transport system inner membrane component KW556_06350 PF00528 Binding-protein-dependent transport system inner membrane component KW556_06355 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_06360 PF09308 LuxQ, periplasmic KW556_06360 PF00512 His Kinase A (phospho-acceptor) domain KW556_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_06360 PF00072 Response regulator receiver domain KW556_06380 PF10725 Protein of unknown function (DUF2517) KW556_06390 PF05114 Protein of unknown function (DUF692) KW556_06410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_06410 PF13426 PAS domain KW556_06410 PF08447 PAS fold KW556_06425 PF04632 Fusaric acid resistance protein family KW556_06430 PF00994 Probable molybdopterin binding domain KW556_06430 PF03454 MoeA C-terminal region (domain IV) KW556_06430 PF03453 MoeA N-terminal region (domain I and II) KW556_06435 PF12804 MobA-like NTP transferase domain KW556_06440 PF00005 ABC transporter KW556_06445 PF00528 Binding-protein-dependent transport system inner membrane component KW556_06450 PF12849 PBP superfamily domain KW556_06455 PF00158 Sigma-54 interaction domain KW556_06455 PF00072 Response regulator receiver domain KW556_06455 PF02954 Bacterial regulatory protein, Fis family KW556_06460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_06460 PF00512 His Kinase A (phospho-acceptor) domain KW556_06460 PF00989 PAS fold KW556_06470 PF02634 FdhD/NarQ family KW556_06480 PF13358 DDE superfamily endonuclease KW556_06480 PF13592 Winged helix-turn helix KW556_06535 PF01568 Molydopterin dinucleotide binding domain KW556_06535 PF00384 Molybdopterin oxidoreductase KW556_06535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KW556_06535 PF12838 4Fe-4S dicluster domain KW556_06535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KW556_06535 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KW556_06535 PF00384 Molybdopterin oxidoreductase KW556_06535 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KW556_06535 PF12838 4Fe-4S dicluster domain KW556_06535 PF01568 Molydopterin dinucleotide binding domain KW556_06540 PF13247 4Fe-4S dicluster domain KW556_06560 PF00390 Malic enzyme, N-terminal domain KW556_06560 PF03949 Malic enzyme, NAD binding domain KW556_06565 PF05433 Glycine zipper 2TM domain KW556_06565 PF16998 17 kDa outer membrane surface antigen KW556_06585 PF00860 Permease family KW556_06590 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_06595 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_06595 PF00672 HAMP domain KW556_06620 PF02685 Glucokinase KW556_06625 PF01418 Helix-turn-helix domain, rpiR family KW556_06625 PF01380 SIS domain KW556_06630 PF02887 Pyruvate kinase, alpha/beta domain KW556_06630 PF00224 Pyruvate kinase, barrel domain KW556_06645 PF02049 Flagellar hook-basal body complex protein FliE KW556_06650 PF01514 Secretory protein of YscJ/FliF family KW556_06650 PF08345 Flagellar M-ring protein C-terminal KW556_06655 PF14842 FliG N-terminal domain KW556_06655 PF14841 FliG middle domain KW556_06655 PF01706 FliG C-terminal domain KW556_06665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW556_06665 PF18269 T3SS EscN ATPase C-terminal domain KW556_06685 PF02154 Flagellar motor switch protein FliM KW556_06685 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW556_06690 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KW556_06695 PF04347 Flagellar biosynthesis protein, FliO KW556_06700 PF00813 FliP family KW556_06705 PF01313 Bacterial export proteins, family 3 KW556_06710 PF01311 Bacterial export proteins, family 1 KW556_06715 PF01312 FlhB HrpN YscU SpaS Family KW556_06720 PF00771 FHIPEP family KW556_06725 PF00448 SRP54-type protein, GTPase domain KW556_06730 PF10609 NUBPL iron-transfer P-loop NTPase KW556_06735 PF04545 Sigma-70, region 4 KW556_06735 PF04542 Sigma-70 region 2 KW556_06735 PF04539 Sigma-70 region 3 KW556_06740 PF00072 Response regulator receiver domain KW556_06745 PF04344 Chemotaxis phosphatase, CheZ KW556_06750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_06750 PF00072 Response regulator receiver domain KW556_06750 PF01627 Hpt domain KW556_06750 PF02895 Signal transducing histidine kinase, homodimeric domain KW556_06750 PF01584 CheW-like domain KW556_06755 PF00072 Response regulator receiver domain KW556_06755 PF01339 CheB methylesterase KW556_06760 PF01618 MotA/TolQ/ExbB proton channel family KW556_06765 PF00691 OmpA family KW556_06765 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW556_06770 PF13614 AAA domain KW556_06780 PF01584 CheW-like domain KW556_06790 PF00005 ABC transporter KW556_06795 PF03379 CcmB protein KW556_06800 PF01578 Cytochrome C assembly protein KW556_06805 PF04995 Heme exporter protein D (CcmD) KW556_06810 PF03100 CcmE KW556_06815 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KW556_06815 PF01578 Cytochrome C assembly protein KW556_06820 PF08534 Redoxin KW556_06825 PF03918 Cytochrome C biogenesis protein KW556_06835 PF04333 MlaA lipoprotein KW556_06840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KW556_06840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KW556_06845 PF00462 Glutaredoxin KW556_06850 PF13592 Winged helix-turn helix KW556_06850 PF13358 DDE superfamily endonuclease KW556_06865 PF03222 Tryptophan/tyrosine permease family KW556_06870 PF00871 Acetokinase family KW556_06875 PF01228 Glycine radical KW556_06875 PF02901 Pyruvate formate lyase-like KW556_06880 PF01042 Endoribonuclease L-PSP KW556_06885 PF01189 16S rRNA methyltransferase RsmB/F KW556_06885 PF01029 NusB family KW556_06890 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region KW556_06890 PF01243 Pyridoxamine 5'-phosphate oxidase KW556_06895 PF13417 Glutathione S-transferase, N-terminal domain KW556_06910 PF08007 Cupin superfamily protein KW556_06915 PF00206 Lyase KW556_06915 PF08328 Adenylosuccinate lyase C-terminal KW556_06920 PF04356 Protein of unknown function (DUF489) KW556_06930 PF00293 NUDIX domain KW556_06935 PF00849 RNA pseudouridylate synthase KW556_06945 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_06950 PF07690 Major Facilitator Superfamily KW556_06955 PF02378 Phosphotransferase system, EIIC KW556_06955 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_06955 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_07025 PF13580 SIS domain KW556_07040 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW556_07040 PF00356 Bacterial regulatory proteins, lacI family KW556_07045 PF02378 Phosphotransferase system, EIIC KW556_07045 PF00367 phosphotransferase system, EIIB KW556_07050 PF00155 Aminotransferase class I and II KW556_07055 PF02075 Crossover junction endodeoxyribonuclease RuvC KW556_07060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW556_07060 PF02770 Acyl-CoA dehydrogenase, middle domain KW556_07060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW556_07060 PF09317 Domain of unknown function (DUF1974) KW556_07065 PF00440 Bacterial regulatory proteins, tetR family KW556_07125 PF01668 SmpB protein KW556_07130 PF03364 Polyketide cyclase / dehydrase and lipid transport KW556_07135 PF03658 RnfH family Ubiquitin KW556_07140 PF01546 Peptidase family M20/M25/M40 KW556_07140 PF07687 Peptidase dimerisation domain KW556_07145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW556_07145 PF09317 Domain of unknown function (DUF1974) KW556_07145 PF02770 Acyl-CoA dehydrogenase, middle domain KW556_07145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW556_07150 PF13580 SIS domain KW556_07155 PF13230 Glutamine amidotransferases class-II KW556_07165 PF01933 Uncharacterised protein family UPF0052 KW556_07175 PF09456 RcsC Alpha-Beta-Loop (ABL) KW556_07175 PF00072 Response regulator receiver domain KW556_07175 PF00512 His Kinase A (phospho-acceptor) domain KW556_07175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_07185 PF00072 Response regulator receiver domain KW556_07185 PF00196 Bacterial regulatory proteins, luxR family KW556_07190 PF07730 Histidine kinase KW556_07190 PF00672 HAMP domain KW556_07190 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term KW556_07190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_07195 PF04055 Radical SAM superfamily KW556_07195 PF06463 Molybdenum Cofactor Synthesis C KW556_07200 PF13187 4Fe-4S dicluster domain KW556_07200 PF12838 4Fe-4S dicluster domain KW556_07210 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KW556_07210 PF00384 Molybdopterin oxidoreductase KW556_07210 PF01568 Molydopterin dinucleotide binding domain KW556_07210 PF10518 TAT (twin-arginine translocation) pathway signal sequence KW556_07215 PF12800 4Fe-4S binding domain KW556_07215 PF12838 4Fe-4S dicluster domain KW556_07220 PF12801 4Fe-4S binding domain KW556_07220 PF12837 4Fe-4S binding domain KW556_07225 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) KW556_07230 PF03264 NapC/NirT cytochrome c family, N-terminal region KW556_07235 PF00994 Probable molybdopterin binding domain KW556_07240 PF01967 MoaC family KW556_07245 PF02597 ThiS family KW556_07250 PF02391 MoaE protein KW556_07260 PF00528 Binding-protein-dependent transport system inner membrane component KW556_07265 PF00005 ABC transporter KW556_07265 PF03459 TOBE domain KW556_07270 PF12697 Alpha/beta hydrolase family KW556_07275 PF06406 StbA protein KW556_07285 PF00899 ThiF family KW556_07290 PF03454 MoeA C-terminal region (domain IV) KW556_07290 PF00994 Probable molybdopterin binding domain KW556_07290 PF03453 MoeA N-terminal region (domain I and II) KW556_07295 PF01227 GTP cyclohydrolase I KW556_07300 PF00672 HAMP domain KW556_07300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07305 PF17200 Single Cache domain 2 KW556_07305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07305 PF00672 HAMP domain KW556_07310 PF01268 Formate--tetrahydrofolate ligase KW556_07320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_07320 PF03466 LysR substrate binding domain KW556_07325 PF04264 YceI-like domain KW556_07365 PF17810 Arginine decarboxylase helical bundle domain KW556_07365 PF17944 Arginine decarboxylase C-terminal helical extension KW556_07365 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KW556_07380 PF12729 Four helix bundle sensory module for signal transduction KW556_07380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07380 PF00672 HAMP domain KW556_07390 PF01042 Endoribonuclease L-PSP KW556_07395 PF03313 Serine dehydratase alpha chain KW556_07400 PF08348 YheO-like PAS domain KW556_07400 PF13309 HTH domain KW556_07405 PF00300 Histidine phosphatase superfamily (branch 1) KW556_07410 PF00672 HAMP domain KW556_07410 PF12729 Four helix bundle sensory module for signal transduction KW556_07410 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07415 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase KW556_07415 PF12241 Trans-2-enoyl-CoA reductase catalytic region KW556_07415 PF07055 Enoyl reductase FAD binding domain KW556_07420 PF03606 C4-dicarboxylate anaerobic carrier KW556_07425 PF00155 Aminotransferase class I and II KW556_07435 PF00230 Major intrinsic protein KW556_07440 PF01464 Transglycosylase SLT domain KW556_07440 PF10145 Phage-related minor tail protein KW556_07440 PF01551 Peptidase family M23 KW556_07455 PF13091 PLD-like domain KW556_07455 PF13396 Phospholipase_D-nuclease N-terminal KW556_07465 PF01842 ACT domain KW556_07465 PF00551 Formyl transferase KW556_07470 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KW556_07480 PF00085 Thioredoxin KW556_07485 PF01648 4'-phosphopantetheinyl transferase superfamily KW556_07490 PF00877 NlpC/P60 family KW556_07495 PF05971 RNA methyltransferase KW556_07500 PF01575 MaoC like domain KW556_07505 PF00939 Sodium:sulfate symporter transmembrane region KW556_07525 PF07509 Protein of unknown function (DUF1523) KW556_07530 PF12729 Four helix bundle sensory module for signal transduction KW556_07530 PF00672 HAMP domain KW556_07530 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07535 PF01810 LysE type translocator KW556_07545 PF00171 Aldehyde dehydrogenase family KW556_07545 PF00465 Iron-containing alcohol dehydrogenase KW556_07550 PF01914 MarC family integral membrane protein KW556_07555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_07560 PF00528 Binding-protein-dependent transport system inner membrane component KW556_07565 PF00528 Binding-protein-dependent transport system inner membrane component KW556_07565 PF12911 N-terminal TM domain of oligopeptide transport permease C KW556_07570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_07570 PF00005 ABC transporter KW556_07575 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_07575 PF00005 ABC transporter KW556_07580 PF03741 Integral membrane protein TerC family KW556_07585 PF01168 Alanine racemase, N-terminal domain KW556_07585 PF00842 Alanine racemase, C-terminal domain KW556_07595 PF00437 Type II/IV secretion system protein KW556_07610 PF01032 FecCD transport family KW556_07615 PF00005 ABC transporter KW556_07620 PF00583 Acetyltransferase (GNAT) family KW556_07625 PF00793 DAHP synthetase I family KW556_07630 PF01219 Prokaryotic diacylglycerol kinase KW556_07635 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW556_07635 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_07635 PF01842 ACT domain KW556_07640 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) KW556_07645 PF01812 5-formyltetrahydrofolate cyclo-ligase family KW556_07660 PF05173 Dihydrodipicolinate reductase, C-terminus KW556_07660 PF01113 Dihydrodipicolinate reductase, N-terminus KW556_07665 PF00117 Glutamine amidotransferase class-I KW556_07665 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KW556_07670 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KW556_07670 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KW556_07670 PF02142 MGS-like domain KW556_07675 PF07759 Protein of unknown function (DUF1615) KW556_07680 PF01609 Transposase DDE domain KW556_07680 PF02281 Transposase Tn5 dimerisation domain KW556_07680 PF14706 Transposase DNA-binding KW556_07700 PF03471 Transporter associated domain KW556_07700 PF02080 TrkA-C domain KW556_07700 PF00999 Sodium/hydrogen exchanger family KW556_07710 PF02557 D-alanyl-D-alanine carboxypeptidase KW556_07715 PF01546 Peptidase family M20/M25/M40 KW556_07715 PF07687 Peptidase dimerisation domain KW556_07720 PF03960 ArsC family KW556_07730 PF03606 C4-dicarboxylate anaerobic carrier KW556_07735 PF07687 Peptidase dimerisation domain KW556_07735 PF01546 Peptidase family M20/M25/M40 KW556_07745 PF03605 Anaerobic c4-dicarboxylate membrane transporter KW556_07755 PF01336 OB-fold nucleic acid binding domain KW556_07755 PF00152 tRNA synthetases class II (D, K and N) KW556_07770 PF00202 Aminotransferase class-III KW556_07775 PF04055 Radical SAM superfamily KW556_07775 PF06968 Biotin and Thiamin Synthesis associated domain KW556_07780 PF00155 Aminotransferase class I and II KW556_07785 PF08241 Methyltransferase domain KW556_07785 PF12697 Alpha/beta hydrolase family KW556_07795 PF01435 Peptidase family M48 KW556_07800 PF13426 PAS domain KW556_07800 PF08447 PAS fold KW556_07800 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_07805 PF03476 MOSC N-terminal beta barrel domain KW556_07805 PF03476 MOSC N-terminal beta barrel domain KW556_07805 PF03473 MOSC domain KW556_07805 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_07805 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_07805 PF03473 MOSC domain KW556_07815 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KW556_07815 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KW556_07815 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_07820 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_07820 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg KW556_07820 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase KW556_07820 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II KW556_07820 PF10371 Domain of unknown function KW556_07835 PF01370 NAD dependent epimerase/dehydratase family KW556_07840 PF03061 Thioesterase superfamily KW556_07850 PF03372 Endonuclease/Exonuclease/phosphatase family KW556_07855 PF00462 Glutaredoxin KW556_07860 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KW556_07865 PF04851 Type III restriction enzyme, res subunit KW556_07865 PF00271 Helicase conserved C-terminal domain KW556_07870 PF00529 HlyD membrane-fusion protein of T1SS KW556_07870 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_07875 PF11742 Protein of unknown function (DUF3302) KW556_07880 PF02554 Carbon starvation protein CstA KW556_07885 PF04397 LytTr DNA-binding domain KW556_07885 PF00072 Response regulator receiver domain KW556_07890 PF06580 Histidine kinase KW556_07890 PF07694 5TMR of 5TMR-LYT KW556_07895 PF01966 HD domain KW556_07900 PF08019 Phosphoethanolamine transferase EptA/EptB KW556_07900 PF00884 Sulfatase KW556_07905 PF01047 MarR family KW556_07905 PF00480 ROK family KW556_07910 PF01979 Amidohydrolase family KW556_07915 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KW556_07920 PF02378 Phosphotransferase system, EIIC KW556_07920 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KW556_07920 PF00367 phosphotransferase system, EIIB KW556_07925 PF02838 Glycosyl hydrolase family 20, domain 2 KW556_07925 PF00728 Glycosyl hydrolase family 20, catalytic domain KW556_07925 PF03173 Putative carbohydrate binding domain KW556_07925 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain KW556_07930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain KW556_07930 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW556_07935 PF01475 Ferric uptake regulator family KW556_07945 PF00258 Flavodoxin KW556_07950 PF01402 Ribbon-helix-helix protein, copG family KW556_07960 PF12697 Alpha/beta hydrolase family KW556_07965 PF03925 SeqA protein C-terminal domain KW556_07965 PF17206 SeqA protein N-terminal domain KW556_07970 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KW556_07970 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KW556_07970 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KW556_07970 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KW556_07980 PF01047 MarR family KW556_07985 PF13406 Transglycosylase SLT domain KW556_07990 PF01066 CDP-alcohol phosphatidyltransferase KW556_07995 PF00005 ABC transporter KW556_08005 PF13416 Bacterial extracellular solute-binding protein KW556_08010 PF00403 Heavy-metal-associated domain KW556_08010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW556_08010 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_08015 PF02627 Carboxymuconolactone decarboxylase family KW556_08035 PF07244 Surface antigen variable number repeat KW556_08035 PF01103 Surface antigen KW556_08035 PF17243 POTRA domain TamA domain 1 KW556_08040 PF04357 TamB, inner membrane protein subunit of TAM complex KW556_08060 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KW556_08065 PF00990 Diguanylate cyclase, GGDEF domain KW556_08065 PF00563 EAL domain KW556_08065 PF03707 Bacterial signalling protein N terminal repeat KW556_08070 PF14718 Soluble lytic murein transglycosylase L domain KW556_08070 PF01464 Transglycosylase SLT domain KW556_08075 PF00356 Bacterial regulatory proteins, lacI family KW556_08080 PF00793 DAHP synthetase I family KW556_08085 PF00593 TonB dependent receptor KW556_08085 PF07715 TonB-dependent Receptor Plug Domain KW556_08090 PF00425 chorismate binding enzyme KW556_08095 PF00501 AMP-binding enzyme KW556_08095 PF13193 AMP-binding enzyme C-terminal domain KW556_08100 PF00550 Phosphopantetheine attachment site KW556_08100 PF00857 Isochorismatase family KW556_08110 PF00550 Phosphopantetheine attachment site KW556_08110 PF00668 Condensation domain KW556_08110 PF00501 AMP-binding enzyme KW556_08110 PF00975 Thioesterase domain KW556_08120 PF00676 Dehydrogenase E1 component KW556_08125 PF02780 Transketolase, C-terminal domain KW556_08125 PF02779 Transketolase, pyrimidine binding domain KW556_08130 PF02817 e3 binding domain KW556_08130 PF00364 Biotin-requiring enzyme KW556_08130 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW556_08135 PF00313 'Cold-shock' DNA-binding domain KW556_08160 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_08165 PF00455 DeoR C terminal sensor domain KW556_08165 PF08220 DeoR-like helix-turn-helix domain KW556_08170 PF02901 Pyruvate formate lyase-like KW556_08170 PF01228 Glycine radical KW556_08175 PF04055 Radical SAM superfamily KW556_08180 PF00923 Transaldolase/Fructose-6-phosphate aldolase KW556_08190 PF01966 HD domain KW556_08195 PF01479 S4 domain KW556_08195 PF00849 RNA pseudouridylate synthase KW556_08205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_08210 PF12850 Calcineurin-like phosphoesterase superfamily domain KW556_08225 PF13144 Chaperone for flagella basal body P-ring formation KW556_08230 PF01584 CheW-like domain KW556_08230 PF00072 Response regulator receiver domain KW556_08235 PF01739 CheR methyltransferase, SAM binding domain KW556_08235 PF03705 CheR methyltransferase, all-alpha domain KW556_08240 PF00460 Flagella basal body rod protein KW556_08245 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_08245 PF00460 Flagella basal body rod protein KW556_08255 PF00460 Flagella basal body rod protein KW556_08255 PF07559 Flagellar basal body protein FlaE KW556_08255 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_08260 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_08260 PF00460 Flagella basal body rod protein KW556_08265 PF00460 Flagella basal body rod protein KW556_08265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_08270 PF02107 Flagellar L-ring protein KW556_08275 PF02119 Flagellar P-ring protein KW556_08280 PF10135 Rod binding protein KW556_08280 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KW556_08285 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KW556_08285 PF07196 Flagellin hook IN motif KW556_08290 PF00669 Bacterial flagellin N-terminal helical region KW556_08300 PF03448 MgtE intracellular N domain KW556_08300 PF01769 Divalent cation transporter KW556_08300 PF00571 CBS domain KW556_08305 PF02541 Ppx/GppA phosphatase family KW556_08310 PF13090 Polyphosphate kinase C-terminal domain 2 KW556_08310 PF17941 Polyphosphate kinase C-terminal domain 1 KW556_08310 PF13089 Polyphosphate kinase N-terminal domain KW556_08310 PF02503 Polyphosphate kinase middle domain KW556_08315 PF01842 ACT domain KW556_08325 PF06490 Flagellar regulatory protein FleQ KW556_08325 PF02954 Bacterial regulatory protein, Fis family KW556_08325 PF00158 Sigma-54 interaction domain KW556_08330 PF00512 His Kinase A (phospho-acceptor) domain KW556_08330 PF13188 PAS domain KW556_08330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_08335 PF02954 Bacterial regulatory protein, Fis family KW556_08335 PF00072 Response regulator receiver domain KW556_08335 PF00158 Sigma-54 interaction domain KW556_08340 PF01784 NIF3 (NGG1p interacting factor 3) KW556_08345 PF00551 Formyl transferase KW556_08350 PF02769 AIR synthase related protein, C-terminal domain KW556_08350 PF00586 AIR synthase related protein, N-terminal domain KW556_08365 PF00308 Bacterial dnaA protein KW556_08370 PF00463 Isocitrate lyase family KW556_08375 PF01274 Malate synthase KW556_08390 PF14437 MafB19-like deaminase KW556_08395 PF00528 Binding-protein-dependent transport system inner membrane component KW556_08400 PF00528 Binding-protein-dependent transport system inner membrane component KW556_08405 PF00005 ABC transporter KW556_08410 PF01895 PhoU domain KW556_08415 PF01595 Cyclin M transmembrane N-terminal domain KW556_08415 PF03471 Transporter associated domain KW556_08415 PF00571 CBS domain KW556_08425 PF00809 Pterin binding enzyme KW556_08425 PF02965 Vitamin B12 dependent methionine synthase, activation domain KW556_08425 PF02607 B12 binding domain KW556_08425 PF02310 B12 binding domain KW556_08425 PF02574 Homocysteine S-methyltransferase KW556_08430 PF13520 Amino acid permease KW556_08435 PF04116 Fatty acid hydroxylase superfamily KW556_08450 PF02153 Prephenate dehydrogenase KW556_08450 PF01817 Chorismate mutase type II KW556_08455 PF00793 DAHP synthetase I family KW556_08460 PF00483 Nucleotidyl transferase KW556_08465 PF02355 Protein export membrane protein KW556_08465 PF07549 SecD/SecF GG Motif KW556_08470 PF02355 Protein export membrane protein KW556_08470 PF07549 SecD/SecF GG Motif KW556_08470 PF13721 SecD export protein N-terminal TM region KW556_08505 PF01230 HIT domain KW556_08510 PF00672 HAMP domain KW556_08510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_08520 PF01979 Amidohydrolase family KW556_08535 PF00375 Sodium:dicarboxylate symporter family KW556_08540 PF13426 PAS domain KW556_08540 PF08447 PAS fold KW556_08540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_08550 PF05661 Protein of unknown function (DUF808) KW556_08555 PF01432 Peptidase family M3 KW556_08555 PF08439 Oligopeptidase F KW556_08560 PF00860 Permease family KW556_08565 PF05728 Uncharacterised protein family (UPF0227) KW556_08570 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_08580 PF04055 Radical SAM superfamily KW556_08585 PF00563 EAL domain KW556_08585 PF00990 Diguanylate cyclase, GGDEF domain KW556_08585 PF03707 Bacterial signalling protein N terminal repeat KW556_08590 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_08590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW556_08600 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain KW556_08600 PF01835 MG2 domain KW556_08600 PF17962 Bacterial macroglobulin domain 6 KW556_08600 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain KW556_08600 PF11974 Bacterial alpha-2-macroglobulin MG3 domain KW556_08600 PF00207 Alpha-2-macroglobulin family KW556_08600 PF07703 Alpha-2-macroglobulin bait region domain KW556_08600 PF07678 A-macroglobulin TED domain KW556_08600 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain KW556_08605 PF00912 Transglycosylase KW556_08605 PF00905 Penicillin binding protein transpeptidase domain KW556_08605 PF06832 Penicillin-Binding Protein C-terminus Family KW556_08615 PF12167 Arm DNA-binding domain KW556_08615 PF00589 Phage integrase family KW556_08660 PF04381 Putative exonuclease, RdgC KW556_08690 PF12684 PDDEXK-like domain of unknown function (DUF3799) KW556_08690 PF06630 Enterobacterial exodeoxyribonuclease VIII KW556_08735 PF03374 Phage antirepressor protein KilAC domain KW556_08735 PF09669 Phage regulatory protein Rha (Phage_pRha) KW556_08925 PF01609 Transposase DDE domain KW556_08950 PF02568 Thiamine biosynthesis protein (ThiI) KW556_08950 PF02926 THUMP domain KW556_08960 PF03458 UPF0126 domain KW556_08965 PF00700 Bacterial flagellin C-terminal helical region KW556_08965 PF07196 Flagellin hook IN motif KW556_08965 PF00669 Bacterial flagellin N-terminal helical region KW556_08975 PF00700 Bacterial flagellin C-terminal helical region KW556_08975 PF07196 Flagellin hook IN motif KW556_08975 PF00669 Bacterial flagellin N-terminal helical region KW556_08985 PF07196 Flagellin hook IN motif KW556_08985 PF07195 Flagellar hook-associated protein 2 C-terminus KW556_08985 PF02465 Flagellar hook-associated protein 2 N-terminus KW556_08990 PF02561 Flagellar protein FliS KW556_09010 PF08666 SAF domain KW556_09010 PF03102 NeuB family KW556_09025 PF13419 Haloacid dehalogenase-like hydrolase KW556_09030 PF00202 Aminotransferase class-III KW556_09035 PF02348 Cytidylyltransferase KW556_09045 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW556_09050 PF02719 Polysaccharide biosynthesis protein KW556_09055 PF01497 Periplasmic binding protein KW556_09065 PF01048 Phosphorylase superfamily KW556_09070 PF02535 ZIP Zinc transporter KW556_09075 PF00459 Inositol monophosphatase family KW556_09085 PF02798 Glutathione S-transferase, N-terminal domain KW556_09085 PF00043 Glutathione S-transferase, C-terminal domain KW556_09090 PF07690 Major Facilitator Superfamily KW556_09095 PF03466 LysR substrate binding domain KW556_09095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_09100 PF02634 FdhD/NarQ family KW556_09105 PF00384 Molybdopterin oxidoreductase KW556_09115 PF05164 Cell division protein ZapA KW556_09120 PF03695 Uncharacterised protein family (UPF0149) KW556_09125 PF01494 FAD binding domain KW556_09130 PF01494 FAD binding domain KW556_09140 PF08669 Glycine cleavage T-protein C-terminal barrel domain KW556_09140 PF01571 Aminomethyltransferase folate-binding domain KW556_09145 PF01597 Glycine cleavage H-protein KW556_09150 PF02347 Glycine cleavage system P-protein KW556_09155 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_09155 PF08447 PAS fold KW556_09170 PF00324 Amino acid permease KW556_09180 PF03618 Kinase/pyrophosphorylase KW556_09185 PF00391 PEP-utilising enzyme, mobile domain KW556_09185 PF02896 PEP-utilising enzyme, TIM barrel domain KW556_09185 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KW556_09195 PF01483 Proprotein convertase P-domain KW556_09195 PF00082 Subtilase family KW556_09205 PF00990 Diguanylate cyclase, GGDEF domain KW556_09205 PF05230 MASE2 domain KW556_09230 PF03180 NLPA lipoprotein KW556_09235 PF11893 Domain of unknown function (DUF3413) KW556_09235 PF00884 Sulfatase KW556_09240 PF07208 Protein of unknown function (DUF1414) KW556_09245 PF04245 37-kD nucleoid-associated bacterial protein KW556_09250 PF01547 Bacterial extracellular solute-binding protein KW556_09255 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09255 PF14785 Maltose transport system permease protein MalF P2 domain KW556_09260 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09265 PF00005 ABC transporter KW556_09265 PF08402 TOBE domain KW556_09270 PF03976 Polyphosphate kinase 2 (PPK2) KW556_09275 PF00561 alpha/beta hydrolase fold KW556_09285 PF01594 AI-2E family transporter KW556_09295 PF01435 Peptidase family M48 KW556_09295 PF07720 Tetratricopeptide repeat KW556_09300 PF00578 AhpC/TSA family KW556_09305 PF03960 ArsC family KW556_09315 PF04336 Acyl carrier protein phosphodiesterase KW556_09320 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_09325 PF01979 Amidohydrolase family KW556_09330 PF03956 Lysine exporter LysO KW556_09335 PF00005 ABC transporter KW556_09340 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_09345 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09350 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09355 PF00849 RNA pseudouridylate synthase KW556_09365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW556_09370 PF04209 homogentisate 1,2-dioxygenase KW556_09380 PF14497 Glutathione S-transferase, C-terminal domain KW556_09380 PF02798 Glutathione S-transferase, N-terminal domain KW556_09400 PF13677 Membrane MotB of proton-channel complex MotA/MotB KW556_09400 PF00691 OmpA family KW556_09405 PF01618 MotA/TolQ/ExbB proton channel family KW556_09415 PF13358 DDE superfamily endonuclease KW556_09415 PF13592 Winged helix-turn helix KW556_09420 PF01609 Transposase DDE domain KW556_09420 PF05598 Transposase domain (DUF772) KW556_09430 PF00072 Response regulator receiver domain KW556_09435 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW556_09435 PF00512 His Kinase A (phospho-acceptor) domain KW556_09435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_09435 PF00672 HAMP domain KW556_09435 PF01627 Hpt domain KW556_09435 PF00072 Response regulator receiver domain KW556_09485 PF00589 Phage integrase family KW556_09485 PF02899 Phage integrase, N-terminal SAM-like domain KW556_09505 PF04536 TPM domain KW556_09515 PF03411 Penicillin-insensitive murein endopeptidase KW556_09520 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09525 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_09530 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09535 PF00005 ABC transporter KW556_09545 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) KW556_09550 PF00248 Aldo/keto reductase family KW556_09560 PF00106 short chain dehydrogenase KW556_09565 PF01212 Beta-eliminating lyase KW556_09575 PF00072 Response regulator receiver domain KW556_09580 PF03466 LysR substrate binding domain KW556_09580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_09600 PF03806 AbgT putative transporter family KW556_09605 PF00881 Nitroreductase family KW556_09620 PF07690 Major Facilitator Superfamily KW556_09625 PF03466 LysR substrate binding domain KW556_09625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_09630 PF03466 LysR substrate binding domain KW556_09630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_09635 PF00925 GTP cyclohydrolase II KW556_09640 PF02224 Cytidylate kinase KW556_09645 PF00575 S1 RNA binding domain KW556_09650 PF00216 Bacterial DNA-binding protein KW556_09660 PF18073 Rubredoxin metal binding domain KW556_09665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KW556_09680 PF06508 Queuosine biosynthesis protein QueC KW556_09685 PF04055 Radical SAM superfamily KW556_09690 PF12843 Putative quorum-sensing-regulated virulence factor KW556_09695 PF01923 Cobalamin adenosyltransferase KW556_09700 PF00816 H-NS histone family KW556_09705 PF03553 Na+/H+ antiporter family KW556_09710 PF00265 Thymidine kinase KW556_09720 PF10722 Putative bacterial sensory transduction regulator KW556_09735 PF03706 Lysylphosphatidylglycerol synthase TM region KW556_09735 PF09924 Uncharacterised conserved protein (DUF2156) KW556_09745 PF00512 His Kinase A (phospho-acceptor) domain KW556_09745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_09745 PF00672 HAMP domain KW556_09750 PF00486 Transcriptional regulatory protein, C terminal KW556_09750 PF00072 Response regulator receiver domain KW556_09770 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KW556_09770 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KW556_09775 PF00313 'Cold-shock' DNA-binding domain KW556_09780 PF02617 ATP-dependent Clp protease adaptor protein ClpS KW556_09785 PF07724 AAA domain (Cdc48 subfamily) KW556_09785 PF00004 ATPase family associated with various cellular activities (AAA) KW556_09785 PF17871 AAA lid domain KW556_09785 PF02861 Clp amino terminal domain, pathogenicity island component KW556_09785 PF10431 C-terminal, D2-small domain, of ClpB protein KW556_09790 PF01176 Translation initiation factor 1A / IF-1 KW556_09795 PF04377 Arginine-tRNA-protein transferase, C terminus KW556_09795 PF04376 Arginine-tRNA-protein transferase, N terminus KW556_09800 PF03588 Leucyl/phenylalanyl-tRNA protein transferase KW556_09805 PF05433 Glycine zipper 2TM domain KW556_09810 PF17158 Membrane-associated sensor, integral membrane domain KW556_09810 PF00990 Diguanylate cyclase, GGDEF domain KW556_09815 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_09820 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KW556_09820 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KW556_09825 PF01037 Lrp/AsnC ligand binding domain KW556_09830 PF01580 FtsK/SpoIIIE family KW556_09830 PF09397 Ftsk gamma domain KW556_09830 PF17854 FtsK alpha domain KW556_09830 PF13491 4TM region of DNA translocase FtsK/SpoIIIE KW556_09835 PF03548 Outer membrane lipoprotein carrier protein LolA KW556_09840 PF12002 MgsA AAA+ ATPase C terminal KW556_09840 PF16193 AAA C-terminal domain KW556_09840 PF00004 ATPase family associated with various cellular activities (AAA) KW556_09845 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW556_09845 PF02403 Seryl-tRNA synthetase N-terminal domain KW556_09855 PF02674 Colicin V production protein KW556_09860 PF00156 Phosphoribosyl transferase domain KW556_09865 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) KW556_09870 PF05191 Adenylate kinase, active site lid KW556_09875 PF00762 Ferrochelatase KW556_09885 PF00294 pfkB family carbohydrate kinase KW556_09900 PF00563 EAL domain KW556_09900 PF00990 Diguanylate cyclase, GGDEF domain KW556_09900 PF03707 Bacterial signalling protein N terminal repeat KW556_09905 PF00483 Nucleotidyl transferase KW556_09915 PF07273 Protein of unknown function (DUF1439) KW556_09925 PF13358 DDE superfamily endonuclease KW556_09925 PF13592 Winged helix-turn helix KW556_09945 PF01740 STAS domain KW556_09945 PF00916 Sulfate permease family KW556_09955 PF13662 Toprim domain KW556_09955 PF02132 RecR protein KW556_09960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_09960 PF00183 Hsp90 protein KW556_09965 PF00005 ABC transporter KW556_09970 PF00005 ABC transporter KW556_09970 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KW556_09975 PF12911 N-terminal TM domain of oligopeptide transport permease C KW556_09975 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09980 PF00528 Binding-protein-dependent transport system inner membrane component KW556_09985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_09990 PF02954 Bacterial regulatory protein, Fis family KW556_09990 PF00158 Sigma-54 interaction domain KW556_09995 PF04012 PspA/IM30 family KW556_10000 PF06667 Phage shock protein B KW556_10010 PF04317 YcjX-like family, DUF463 KW556_10015 PF05128 Domain of unknown function (DUF697) KW556_10020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10020 PF03466 LysR substrate binding domain KW556_10025 PF13416 Bacterial extracellular solute-binding protein KW556_10030 PF00005 ABC transporter KW556_10030 PF08402 TOBE domain KW556_10035 PF00528 Binding-protein-dependent transport system inner membrane component KW556_10040 PF00528 Binding-protein-dependent transport system inner membrane component KW556_10045 PF00171 Aldehyde dehydrogenase family KW556_10050 PF00351 Biopterin-dependent aromatic amino acid hydroxylase KW556_10055 PF01329 Pterin 4 alpha carbinolamine dehydratase KW556_10065 PF00158 Sigma-54 interaction domain KW556_10065 PF18024 Helix-turn-helix domain KW556_10075 PF00990 Diguanylate cyclase, GGDEF domain KW556_10075 PF17152 Periplasmic sensor domain KW556_10080 PF00691 OmpA family KW556_10085 PF03741 Integral membrane protein TerC family KW556_10095 PF08891 YfcL protein KW556_10100 PF00501 AMP-binding enzyme KW556_10105 PF01053 Cys/Met metabolism PLP-dependent enzyme KW556_10110 PF01609 Transposase DDE domain KW556_10120 PF13460 NAD(P)H-binding KW556_10125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10125 PF03466 LysR substrate binding domain KW556_10130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10130 PF03466 LysR substrate binding domain KW556_10135 PF07690 Major Facilitator Superfamily KW556_10140 PF02678 Pirin KW556_10140 PF05726 Pirin C-terminal cupin domain KW556_10145 PF00857 Isochorismatase family KW556_10150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10150 PF03466 LysR substrate binding domain KW556_10155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10155 PF03466 LysR substrate binding domain KW556_10160 PF08267 Cobalamin-independent synthase, N-terminal domain KW556_10160 PF01717 Cobalamin-independent synthase, Catalytic domain KW556_10170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_10170 PF03466 LysR substrate binding domain KW556_10175 PF00232 Glycosyl hydrolase family 1 KW556_10180 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding KW556_10180 PF18381 YcaO cyclodehydratase C-terminal domain KW556_10185 PF01226 Formate/nitrite transporter KW556_10190 PF01228 Glycine radical KW556_10190 PF02901 Pyruvate formate lyase-like KW556_10195 PF03692 Putative zinc- or iron-chelating domain KW556_10210 PF00343 Carbohydrate phosphorylase KW556_10245 PF11143 Protein of unknown function (DUF2919) KW556_10250 PF01544 CorA-like Mg2+ transporter protein KW556_10260 PF01012 Electron transfer flavoprotein domain KW556_10265 PF01012 Electron transfer flavoprotein domain KW556_10265 PF00766 Electron transfer flavoprotein FAD-binding domain KW556_10270 PF00266 Aminotransferase class-V KW556_10275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KW556_10280 PF00793 DAHP synthetase I family KW556_10285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_10285 PF00672 HAMP domain KW556_10290 PF04055 Radical SAM superfamily KW556_10295 PF00271 Helicase conserved C-terminal domain KW556_10295 PF00270 DEAD/DEAH box helicase KW556_10300 PF00255 Glutathione peroxidase KW556_10310 PF07478 D-ala D-ala ligase C-terminus KW556_10310 PF01820 D-ala D-ala ligase N-terminus KW556_10315 PF01074 Glycosyl hydrolases family 38 N-terminal domain KW556_10315 PF09261 Alpha mannosidase middle domain KW556_10315 PF07748 Glycosyl hydrolases family 38 C-terminal domain KW556_10320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_10320 PF02378 Phosphotransferase system, EIIC KW556_10320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_10325 PF07702 UTRA domain KW556_10325 PF00392 Bacterial regulatory proteins, gntR family KW556_10330 PF13742 OB-fold nucleic acid binding domain KW556_10330 PF02601 Exonuclease VII, large subunit KW556_10340 PF00571 CBS domain KW556_10340 PF00478 IMP dehydrogenase / GMP reductase domain KW556_10345 PF00117 Glutamine amidotransferase class-I KW556_10345 PF00958 GMP synthase C terminal domain KW556_10345 PF02540 NAD synthase KW556_10380 PF00136 DNA polymerase family B KW556_10380 PF03104 DNA polymerase family B, exonuclease domain KW556_10395 PF01863 Protein of unknown function DUF45 KW556_10400 PF05724 Thiopurine S-methyltransferase (TPMT) KW556_10405 PF00675 Insulinase (Peptidase family M16) KW556_10405 PF05193 Peptidase M16 inactive domain KW556_10405 PF16187 Middle or third domain of peptidase_M16 KW556_10410 PF00300 Histidine phosphatase superfamily (branch 1) KW556_10420 PF00892 EamA-like transporter family KW556_10440 PF03606 C4-dicarboxylate anaerobic carrier KW556_10455 PF05430 S-adenosyl-L-methionine-dependent methyltransferase KW556_10455 PF01266 FAD dependent oxidoreductase KW556_10460 PF02801 Beta-ketoacyl synthase, C-terminal domain KW556_10460 PF00109 Beta-ketoacyl synthase, N-terminal domain KW556_10470 PF06826 Predicted Permease Membrane Region KW556_10470 PF02080 TrkA-C domain KW556_10485 PF00271 Helicase conserved C-terminal domain KW556_10485 PF04851 Type III restriction enzyme, res subunit KW556_10485 PF02151 UvrB/uvrC motif KW556_10485 PF12344 Ultra-violet resistance protein B KW556_10485 PF17757 UvrB interaction domain KW556_10495 PF09335 SNARE associated Golgi protein KW556_10500 PF02600 Disulfide bond formation protein DsbB KW556_10505 PF06450 Bacterial Na+/H+ antiporter B (NhaB) KW556_10510 PF00392 Bacterial regulatory proteins, gntR family KW556_10510 PF07840 FadR C-terminal domain KW556_10520 PF07152 YaeQ protein KW556_10530 PF00717 Peptidase S24-like KW556_10530 PF01381 Helix-turn-helix KW556_10665 PF08461 Ribonuclease R winged-helix domain KW556_10670 PF11985 Protein of unknown function (DUF3486) KW556_10675 PF03237 Terminase-like family KW556_10680 PF06074 Protein of unknown function (DUF935) KW556_10750 PF10124 Mu-like prophage major head subunit gpT KW556_10755 PF10123 Mu-like prophage I protein KW556_10835 PF13188 PAS domain KW556_10835 PF00158 Sigma-54 interaction domain KW556_10835 PF02954 Bacterial regulatory protein, Fis family KW556_10855 PF01554 MatE KW556_10860 PF06786 Uncharacterised protein family (UPF0253) KW556_10870 PF00677 Lumazine binding domain KW556_10880 PF13419 Haloacid dehalogenase-like hydrolase KW556_10885 PF02222 ATP-grasp domain KW556_10885 PF01370 NAD dependent epimerase/dehydratase family KW556_10890 PF00892 EamA-like transporter family KW556_10895 PF02525 Flavodoxin-like fold KW556_10920 PF17783 CvfB-like winged helix domain KW556_10920 PF13509 S1 domain KW556_10930 PF04269 Protein of unknown function, DUF440 KW556_10935 PF00912 Transglycosylase KW556_10940 PF04269 Protein of unknown function, DUF440 KW556_10945 PF03776 Septum formation topological specificity factor MinE KW556_10950 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KW556_10955 PF03775 Septum formation inhibitor MinC, C-terminal domain KW556_10955 PF05209 Septum formation inhibitor MinC, N-terminal domain KW556_10960 PF05166 YcgL domain KW556_10965 PF03315 Serine dehydratase beta chain KW556_10965 PF03313 Serine dehydratase alpha chain KW556_10970 PF03315 Serine dehydratase beta chain KW556_10970 PF03313 Serine dehydratase alpha chain KW556_10975 PF06865 Pyrimidine/purine nucleoside phosphorylase KW556_10980 PF00375 Sodium:dicarboxylate symporter family KW556_10985 PF00365 Phosphofructokinase KW556_10990 PF00121 Triosephosphate isomerase KW556_10995 PF02698 DUF218 domain KW556_11000 PF13847 Methyltransferase domain KW556_11005 PF03882 MukF winged-helix domain KW556_11005 PF17193 MukF C-terminal domain KW556_11005 PF17192 MukF middle domain KW556_11010 PF04288 MukE-like family KW556_11015 PF04310 MukB N-terminal KW556_11015 PF16330 MukB hinge domain KW556_11020 PF03330 Lytic transglycolase KW556_11035 PF01966 HD domain KW556_11040 PF02272 DHHA1 domain KW556_11040 PF01368 DHH family KW556_11040 PF00571 CBS domain KW556_11040 PF01743 Poly A polymerase head domain KW556_11045 PF00270 DEAD/DEAH box helicase KW556_11045 PF11898 Domain of unknown function (DUF3418) KW556_11045 PF04408 Helicase associated domain (HA2) KW556_11045 PF00271 Helicase conserved C-terminal domain KW556_11045 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold KW556_11055 PF01386 Ribosomal L25p family KW556_11060 PF00376 MerR family regulatory protein KW556_11060 PF09278 MerR, DNA binding KW556_11065 PF00108 Thiolase, N-terminal domain KW556_11065 PF02803 Thiolase, C-terminal domain KW556_11070 PF08668 HDOD domain KW556_11070 PF00563 EAL domain KW556_11075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KW556_11080 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) KW556_11090 PF08281 Sigma-70, region 4 KW556_11090 PF04542 Sigma-70 region 2 KW556_11100 PF13519 von Willebrand factor type A domain KW556_11115 PF01882 Protein of unknown function DUF58 KW556_11120 PF07726 ATPase family associated with various cellular activities (AAA) KW556_11120 PF17863 AAA lid domain KW556_11125 PF00108 Thiolase, N-terminal domain KW556_11125 PF02803 Thiolase, C-terminal domain KW556_11130 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KW556_11130 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KW556_11130 PF00378 Enoyl-CoA hydratase/isomerase KW556_11135 PF04293 SpoVR like protein KW556_11140 PF04285 Protein of unknown function (DUF444) KW556_11145 PF06798 PrkA serine protein kinase C-terminal domain KW556_11145 PF08298 PrkA AAA domain KW556_11150 PF09382 RQC domain KW556_11150 PF16124 RecQ zinc-binding KW556_11150 PF00270 DEAD/DEAH box helicase KW556_11150 PF00271 Helicase conserved C-terminal domain KW556_11150 PF00570 HRDC domain KW556_11155 PF00375 Sodium:dicarboxylate symporter family KW556_11160 PF03222 Tryptophan/tyrosine permease family KW556_11165 PF00293 NUDIX domain KW556_11170 PF04715 Anthranilate synthase component I, N terminal region KW556_11170 PF00425 chorismate binding enzyme KW556_11185 PF03831 PhnA domain KW556_11185 PF08274 PhnA Zinc-Ribbon KW556_11195 PF00704 Glycosyl hydrolases family 18 KW556_11195 PF08329 Chitinase A, N-terminal domain KW556_11200 PF04828 Glutathione-dependent formaldehyde-activating enzyme KW556_11205 PF00300 Histidine phosphatase superfamily (branch 1) KW556_11210 PF08448 PAS fold KW556_11210 PF00990 Diguanylate cyclase, GGDEF domain KW556_11215 PF01713 Smr domain KW556_11220 PF05175 Methyltransferase small domain KW556_11225 PF01264 Chorismate synthase KW556_11235 PF00270 DEAD/DEAH box helicase KW556_11235 PF00271 Helicase conserved C-terminal domain KW556_11255 PF09334 tRNA synthetases class I (M) KW556_11255 PF01588 Putative tRNA binding domain KW556_11255 PF08264 Anticodon-binding domain of tRNA KW556_11260 PF10609 NUBPL iron-transfer P-loop NTPase KW556_11265 PF00485 Phosphoribulokinase / Uridine kinase family KW556_11270 PF00692 dUTPase KW556_11275 PF01384 Phosphate transporter family KW556_11295 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW556_11295 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW556_11300 PF00291 Pyridoxal-phosphate dependent enzyme KW556_11305 PF01546 Peptidase family M20/M25/M40 KW556_11305 PF07687 Peptidase dimerisation domain KW556_11310 PF01979 Amidohydrolase family KW556_11315 PF00696 Amino acid kinase family KW556_11320 PF07690 Major Facilitator Superfamily KW556_11325 PF00005 ABC transporter KW556_11330 PF01032 FecCD transport family KW556_11335 PF01497 Periplasmic binding protein KW556_11340 PF00892 EamA-like transporter family KW556_11345 PF01699 Sodium/calcium exchanger protein KW556_11350 PF02625 XdhC and CoxI family KW556_11350 PF13478 XdhC Rossmann domain KW556_11360 PF12804 MobA-like NTP transferase domain KW556_11365 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KW556_11365 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_11370 PF01979 Amidohydrolase family KW556_11375 PF00941 FAD binding domain in molybdopterin dehydrogenase KW556_11380 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KW556_11380 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KW556_11380 PF01799 [2Fe-2S] binding domain KW556_11385 PF00860 Permease family KW556_11390 PF01979 Amidohydrolase family KW556_11395 PF00860 Permease family KW556_11400 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KW556_11400 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KW556_11405 PF03450 CO dehydrogenase flavoprotein C-terminal domain KW556_11405 PF00941 FAD binding domain in molybdopterin dehydrogenase KW556_11410 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_11410 PF01799 [2Fe-2S] binding domain KW556_11415 PF05433 Glycine zipper 2TM domain KW556_11425 PF13193 AMP-binding enzyme C-terminal domain KW556_11425 PF00501 AMP-binding enzyme KW556_11450 PF01502 Phosphoribosyl-AMP cyclohydrolase KW556_11450 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KW556_11455 PF00977 Histidine biosynthesis protein KW556_11460 PF00977 Histidine biosynthesis protein KW556_11465 PF00117 Glutamine amidotransferase class-I KW556_11470 PF00475 Imidazoleglycerol-phosphate dehydratase KW556_11470 PF08645 Polynucleotide kinase 3 phosphatase KW556_11475 PF00155 Aminotransferase class I and II KW556_11480 PF00815 Histidinol dehydrogenase KW556_11485 PF01634 ATP phosphoribosyltransferase KW556_11485 PF08029 HisG, C-terminal domain KW556_11495 PF13307 Helicase C-terminal domain KW556_11495 PF04851 Type III restriction enzyme, res subunit KW556_11500 PF00814 Glycoprotease family KW556_11510 PF12697 Alpha/beta hydrolase family KW556_11515 PF13193 AMP-binding enzyme C-terminal domain KW556_11515 PF00501 AMP-binding enzyme KW556_11520 PF00570 HRDC domain KW556_11520 PF01612 3'-5' exonuclease KW556_11525 PF00753 Metallo-beta-lactamase superfamily KW556_11535 PF02769 AIR synthase related protein, C-terminal domain KW556_11535 PF00586 AIR synthase related protein, N-terminal domain KW556_11550 PF10672 S-adenosylmethionine-dependent methyltransferase KW556_11550 PF17785 PUA-like domain KW556_11555 PF12729 Four helix bundle sensory module for signal transduction KW556_11555 PF00672 HAMP domain KW556_11555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_11560 PF00708 Acylphosphatase KW556_11570 PF13006 Insertion element 4 transposase N-terminal KW556_11570 PF01609 Transposase DDE domain KW556_11575 PF00575 S1 RNA binding domain KW556_11575 PF12111 Polyribonucleotide phosphorylase C terminal KW556_11575 PF10150 Ribonuclease E/G family KW556_11580 PF00849 RNA pseudouridylate synthase KW556_11580 PF01479 S4 domain KW556_11585 PF13419 Haloacid dehalogenase-like hydrolase KW556_11590 PF02545 Maf-like protein KW556_11595 PF02620 Large ribosomal RNA subunit accumulation protein YceD KW556_11600 PF01783 Ribosomal L32p protein family KW556_11605 PF02504 Fatty acid synthesis protein KW556_11610 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW556_11610 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW556_11615 PF00698 Acyl transferase domain KW556_11625 PF00550 Phosphopantetheine attachment site KW556_11630 PF00109 Beta-ketoacyl synthase, N-terminal domain KW556_11630 PF02801 Beta-ketoacyl synthase, C-terminal domain KW556_11635 PF01063 Amino-transferase class IV KW556_11640 PF02618 YceG-like family KW556_11645 PF02223 Thymidylate kinase KW556_11650 PF09115 DNA polymerase III, delta subunit, C terminal KW556_11655 PF01026 TatD related DNase KW556_11660 PF00589 Phage integrase family KW556_11670 PF01526 Tn3 transposase DDE domain KW556_11670 PF13700 Domain of unknown function (DUF4158) KW556_11675 PF02796 Helix-turn-helix domain of resolvase KW556_11675 PF00239 Resolvase, N terminal domain KW556_11680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_11680 PF08447 PAS fold KW556_11690 PF01189 16S rRNA methyltransferase RsmB/F KW556_11690 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF KW556_11690 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF KW556_11695 PF02470 MlaD protein KW556_11700 PF04403 Paraquat-inducible protein A KW556_11715 PF00285 Citrate synthase, C-terminal domain KW556_11720 PF03972 MmgE/PrpD family KW556_11735 PF01609 Transposase DDE domain KW556_11740 PF00158 Sigma-54 interaction domain KW556_11740 PF02954 Bacterial regulatory protein, Fis family KW556_11740 PF01590 GAF domain KW556_11745 PF02634 FdhD/NarQ family KW556_11750 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW556_11750 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW556_11755 PF01266 FAD dependent oxidoreductase KW556_11760 PF04244 Deoxyribodipyrimidine photo-lyase-related protein KW556_11770 PF01212 Beta-eliminating lyase KW556_11775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KW556_11775 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region KW556_11780 PF04172 LrgB-like family KW556_11785 PF03788 LrgA family KW556_11800 PF00929 Exonuclease KW556_11800 PF08411 Exonuclease C-terminal KW556_11805 PF14502 Helix-turn-helix domain KW556_11805 PF14503 YhfZ C-terminal domain KW556_11815 PF02126 Phosphotriesterase family KW556_11820 PF10941 Protein of unknown function DUF2620 KW556_11825 PF10797 Protein of unknown function KW556_11830 PF01168 Alanine racemase, N-terminal domain KW556_11845 PF01676 Metalloenzyme superfamily KW556_11860 PF03222 Tryptophan/tyrosine permease family KW556_11865 PF00356 Bacterial regulatory proteins, lacI family KW556_11865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW556_11870 PF00381 PTS HPr component phosphorylation site KW556_11870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_11875 PF00294 pfkB family carbohydrate kinase KW556_11880 PF02378 Phosphotransferase system, EIIC KW556_11880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_11885 PF06945 Protein of unknown function (DUF1289) KW556_11890 PF06725 3D domain KW556_11890 PF03562 MltA specific insert domain KW556_11895 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_11900 PF00268 Ribonucleotide reductase, small chain KW556_11905 PF00317 Ribonucleotide reductase, all-alpha domain KW556_11905 PF03477 ATP cone domain KW556_11905 PF02867 Ribonucleotide reductase, barrel domain KW556_11910 PF13419 Haloacid dehalogenase-like hydrolase KW556_11920 PF00521 DNA gyrase/topoisomerase IV, subunit A KW556_11920 PF03989 DNA gyrase C-terminal domain, beta-propeller KW556_11925 PF00128 Alpha amylase, catalytic domain KW556_11935 PF04055 Radical SAM superfamily KW556_11945 PF03129 Anticodon binding domain KW556_11945 PF02824 TGS domain KW556_11945 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KW556_11945 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW556_11950 PF00707 Translation initiation factor IF-3, C-terminal domain KW556_11950 PF05198 Translation initiation factor IF-3, N-terminal domain KW556_11955 PF01632 Ribosomal protein L35 KW556_11960 PF00453 Ribosomal protein L20 KW556_11965 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KW556_11965 PF01409 tRNA synthetases class II core domain (F) KW556_11970 PF03483 B3/4 domain KW556_11970 PF03484 tRNA synthetase B5 domain KW556_11970 PF03147 Ferredoxin-fold anticodon binding domain KW556_11970 PF01588 Putative tRNA binding domain KW556_11970 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KW556_11975 PF00216 Bacterial DNA-binding protein KW556_11995 PF02146 Sir2 family KW556_12005 PF00563 EAL domain KW556_12005 PF03707 Bacterial signalling protein N terminal repeat KW556_12005 PF00990 Diguanylate cyclase, GGDEF domain KW556_12010 PF00356 Bacterial regulatory proteins, lacI family KW556_12015 PF00294 pfkB family carbohydrate kinase KW556_12020 PF13407 Periplasmic binding protein domain KW556_12025 PF02653 Branched-chain amino acid transport system / permease component KW556_12030 PF00005 ABC transporter KW556_12035 PF05025 RbsD / FucU transport protein family KW556_12040 PF00043 Glutathione S-transferase, C-terminal domain KW556_12040 PF02798 Glutathione S-transferase, N-terminal domain KW556_12055 PF13416 Bacterial extracellular solute-binding protein KW556_12060 PF00528 Binding-protein-dependent transport system inner membrane component KW556_12065 PF00528 Binding-protein-dependent transport system inner membrane component KW556_12070 PF00005 ABC transporter KW556_12070 PF08402 TOBE domain KW556_12085 PF01171 PP-loop family KW556_12090 PF00582 Universal stress protein family KW556_12095 PF00027 Cyclic nucleotide-binding domain KW556_12095 PF13545 Crp-like helix-turn-helix domain KW556_12110 PF00403 Heavy-metal-associated domain KW556_12120 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP KW556_12120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KW556_12135 PF00115 Cytochrome C and Quinol oxidase polypeptide I KW556_12145 PF13185 GAF domain KW556_12150 PF04352 ProQ/FINO family KW556_12150 PF17516 ProQ C-terminal domain KW556_12155 PF11818 C-terminal domain of tail specific protease (DUF3340) KW556_12155 PF00595 PDZ domain KW556_12155 PF03572 Peptidase family S41 KW556_12155 PF17804 Tail specific protease N-terminal domain KW556_12160 PF11940 Domain of unknown function (DUF3458) Ig-like fold KW556_12160 PF17432 Domain of unknown function (DUF3458_C) ARM repeats KW556_12160 PF01433 Peptidase family M1 domain KW556_12170 PF05088 Bacterial NAD-glutamate dehydrogenase KW556_12175 PF01180 Dihydroorotate dehydrogenase KW556_12180 PF07126 Cell-division protein ZapC KW556_12190 PF01197 Ribosomal protein L31 KW556_12195 PF00444 Ribosomal protein L36 KW556_12200 PF01170 Putative RNA methylase family UPF0020 KW556_12200 PF02926 THUMP domain KW556_12200 PF10672 S-adenosylmethionine-dependent methyltransferase KW556_12210 PF16326 ABC transporter C-terminal domain KW556_12210 PF12848 ABC transporter KW556_12210 PF00005 ABC transporter KW556_12215 PF04957 Ribosome modulation factor KW556_12220 PF07977 FabA-like domain KW556_12225 PF13654 AAA domain KW556_12225 PF05362 Lon protease (S16) C-terminal proteolytic domain KW556_12250 PF07130 YebG protein KW556_12255 PF01674 Lipase (class 2) KW556_12285 PF06974 Protein of unknown function (DUF1298) KW556_12285 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain KW556_12290 PF01609 Transposase DDE domain KW556_12300 PF00535 Glycosyl transferase family 2 KW556_12300 PF07238 PilZ domain KW556_12300 PF03552 Cellulose synthase KW556_12305 PF02397 Bacterial sugar transferase KW556_12310 PF00534 Glycosyl transferases group 1 KW556_12315 PF00211 Adenylate and Guanylate cyclase catalytic domain KW556_12315 PF00072 Response regulator receiver domain KW556_12345 PF09308 LuxQ, periplasmic KW556_12345 PF00512 His Kinase A (phospho-acceptor) domain KW556_12345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_12345 PF00072 Response regulator receiver domain KW556_12350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_12350 PF03466 LysR substrate binding domain KW556_12355 PF02129 X-Pro dipeptidyl-peptidase (S15 family) KW556_12365 PF01609 Transposase DDE domain KW556_12370 PF07690 Major Facilitator Superfamily KW556_12390 PF00899 ThiF family KW556_12390 PF14461 Prokaryotic E2 family B KW556_12435 PF02384 N-6 DNA Methylase KW556_12435 PF12161 HsdM N-terminal domain KW556_12445 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW556_12445 PF18766 SWI2/SNF2 ATPase KW556_12445 PF11867 Domain of unknown function (DUF3387) KW556_12480 PF09615 CRISPR-associated protein (Cas_Csy3) KW556_12505 PF13401 AAA domain KW556_12505 PF01471 Putative peptidoglycan binding domain KW556_12525 PF01925 Sulfite exporter TauE/SafE KW556_12530 PF13520 Amino acid permease KW556_12540 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KW556_12540 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KW556_12545 PF00378 Enoyl-CoA hydratase/isomerase KW556_12550 PF00378 Enoyl-CoA hydratase/isomerase KW556_12555 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW556_12555 PF02770 Acyl-CoA dehydrogenase, middle domain KW556_12555 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW556_12560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KW556_12560 PF02770 Acyl-CoA dehydrogenase, middle domain KW556_12560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KW556_12565 PF01039 Carboxyl transferase domain KW556_12570 PF00378 Enoyl-CoA hydratase/isomerase KW556_12575 PF02785 Biotin carboxylase C-terminal domain KW556_12575 PF00289 Biotin carboxylase, N-terminal domain KW556_12575 PF00364 Biotin-requiring enzyme KW556_12575 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KW556_12580 PF00682 HMGL-like KW556_12585 PF00376 MerR family regulatory protein KW556_12585 PF09278 MerR, DNA binding KW556_12600 PF01184 GPR1/FUN34/yaaH family KW556_12605 PF06167 Glucose-regulated metallo-peptidase M90 KW556_12610 PF00583 Acetyltransferase (GNAT) family KW556_12615 PF01235 Sodium:alanine symporter family KW556_12635 PF05598 Transposase domain (DUF772) KW556_12635 PF01609 Transposase DDE domain KW556_12655 PF00378 Enoyl-CoA hydratase/isomerase KW556_12670 PF04341 Protein of unknown function, DUF485 KW556_12675 PF00474 Sodium:solute symporter family KW556_12680 PF00005 ABC transporter KW556_12680 PF12848 ABC transporter KW556_12685 PF13145 PPIC-type PPIASE domain KW556_12690 PF00216 Bacterial DNA-binding protein KW556_12695 PF00004 ATPase family associated with various cellular activities (AAA) KW556_12695 PF02190 ATP-dependent protease La (LON) substrate-binding domain KW556_12695 PF05362 Lon protease (S16) C-terminal proteolytic domain KW556_12700 PF06689 ClpX C4-type zinc finger KW556_12700 PF10431 C-terminal, D2-small domain, of ClpB protein KW556_12700 PF07724 AAA domain (Cdc48 subfamily) KW556_12705 PF00574 Clp protease KW556_12710 PF05697 Bacterial trigger factor protein (TF) KW556_12710 PF05698 Bacterial trigger factor protein (TF) C-terminus KW556_12710 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_12725 PF12704 MacB-like periplasmic core domain KW556_12725 PF02687 FtsX-like permease family KW556_12730 PF00005 ABC transporter KW556_12735 PF02687 FtsX-like permease family KW556_12735 PF12704 MacB-like periplasmic core domain KW556_12745 PF17757 UvrB interaction domain KW556_12745 PF02559 CarD-like/TRCF domain KW556_12745 PF03461 TRCF domain KW556_12745 PF00270 DEAD/DEAH box helicase KW556_12745 PF00271 Helicase conserved C-terminal domain KW556_12750 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain KW556_12755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KW556_12770 PF03279 Bacterial lipid A biosynthesis acyltransferase KW556_12775 PF03279 Bacterial lipid A biosynthesis acyltransferase KW556_12785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_12785 PF03466 LysR substrate binding domain KW556_12790 PF01261 Xylose isomerase-like TIM barrel KW556_12795 PF02575 YbaB/EbfC DNA-binding family KW556_12800 PF12170 DNA polymerase III tau subunit V interacting with alpha KW556_12800 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding KW556_12800 PF12169 DNA polymerase III subunits gamma and tau domain III KW556_12805 PF00156 Phosphoribosyl transferase domain KW556_12810 PF04304 Protein of unknown function (DUF454) KW556_12815 PF01207 Dihydrouridine synthase (Dus) KW556_12830 PF13419 Haloacid dehalogenase-like hydrolase KW556_12835 PF00883 Cytosol aminopeptidase family, catalytic domain KW556_12835 PF02789 Cytosol aminopeptidase family, N-terminal domain KW556_12860 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) KW556_12860 PF00128 Alpha amylase, catalytic domain KW556_12870 PF11398 Protein of unknown function (DUF2813) KW556_12875 PF12833 Helix-turn-helix domain KW556_12875 PF14525 AraC-binding-like domain KW556_12885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_12885 PF03466 LysR substrate binding domain KW556_12890 PF01925 Sulfite exporter TauE/SafE KW556_12895 PF03942 DTW domain KW556_12900 PF00480 ROK family KW556_12900 PF01047 MarR family KW556_12905 PF00672 HAMP domain KW556_12905 PF17200 Single Cache domain 2 KW556_12905 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_12910 PF02810 SEC-C motif KW556_12915 PF01266 FAD dependent oxidoreductase KW556_12915 PF04324 BFD-like [2Fe-2S] binding domain KW556_12920 PF00890 FAD binding domain KW556_12925 PF02754 Cysteine-rich domain KW556_12925 PF13183 4Fe-4S dicluster domain KW556_12935 PF02335 Cytochrome c552 KW556_12940 PF13435 Cytochrome c554 and c-prime KW556_12940 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) KW556_12945 PF13247 4Fe-4S dicluster domain KW556_12945 PF00037 4Fe-4S binding domain KW556_12950 PF03916 Polysulphide reductase, NrfD KW556_12955 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal KW556_12955 PF01578 Cytochrome C assembly protein KW556_12960 PF08534 Redoxin KW556_12965 PF03918 Cytochrome C biogenesis protein KW556_12990 PF00202 Aminotransferase class-III KW556_12995 PF00266 Aminotransferase class-V KW556_13000 PF07702 UTRA domain KW556_13000 PF00392 Bacterial regulatory proteins, gntR family KW556_13010 PF00005 ABC transporter KW556_13015 PF00528 Binding-protein-dependent transport system inner membrane component KW556_13020 PF01266 FAD dependent oxidoreductase KW556_13030 PF00549 CoA-ligase KW556_13030 PF02629 CoA binding domain KW556_13035 PF08442 ATP-grasp domain KW556_13035 PF00549 CoA-ligase KW556_13040 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KW556_13040 PF00364 Biotin-requiring enzyme KW556_13040 PF02817 e3 binding domain KW556_13045 PF16078 2-oxoglutarate dehydrogenase N-terminus KW556_13045 PF00676 Dehydrogenase E1 component KW556_13045 PF16870 2-oxoglutarate dehydrogenase C-terminal KW556_13045 PF02779 Transketolase, pyrimidine binding domain KW556_13050 PF13085 2Fe-2S iron-sulfur cluster binding domain KW556_13055 PF02910 Fumarate reductase flavoprotein C-term KW556_13055 PF00890 FAD binding domain KW556_13060 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KW556_13065 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KW556_13075 PF00285 Citrate synthase, C-terminal domain KW556_13085 PF13673 Acetyltransferase (GNAT) domain KW556_13095 PF01928 CYTH domain KW556_13110 PF00465 Iron-containing alcohol dehydrogenase KW556_13115 PF08543 Phosphomethylpyrimidine kinase KW556_13140 PF00664 ABC transporter transmembrane region KW556_13140 PF00005 ABC transporter KW556_13145 PF00005 ABC transporter KW556_13145 PF00664 ABC transporter transmembrane region KW556_13150 PF00512 His Kinase A (phospho-acceptor) domain KW556_13150 PF01627 Hpt domain KW556_13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_13150 PF00672 HAMP domain KW556_13150 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) KW556_13150 PF00072 Response regulator receiver domain KW556_13155 PF00085 Thioredoxin KW556_13160 PF00939 Sodium:sulfate symporter transmembrane region KW556_13180 PF03239 Iron permease FTR1 family KW556_13185 PF01593 Flavin containing amine oxidoreductase KW556_13205 PF07690 Major Facilitator Superfamily KW556_13210 PF03600 Citrate transporter KW556_13220 PF00005 ABC transporter KW556_13225 PF12704 MacB-like periplasmic core domain KW556_13225 PF02687 FtsX-like permease family KW556_13245 PF00561 alpha/beta hydrolase fold KW556_13265 PF01625 Peptide methionine sulfoxide reductase KW556_13270 PF00696 Amino acid kinase family KW556_13270 PF00583 Acetyltransferase (GNAT) family KW556_13275 PF01842 ACT domain KW556_13275 PF00696 Amino acid kinase family KW556_13285 PF00884 Sulfatase KW556_13290 PF17676 LD-carboxypeptidase C-terminal domain KW556_13290 PF02016 LD-carboxypeptidase N-terminal domain KW556_13295 PF01734 Patatin-like phospholipase KW556_13300 PF17179 4Fe-4S dicluster domain KW556_13305 PF00175 Oxidoreductase NAD-binding domain KW556_13305 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KW556_13310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KW556_13310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KW556_13310 PF13187 4Fe-4S dicluster domain KW556_13315 PF14824 Sirohaem biosynthesis protein central KW556_13315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KW556_13315 PF10414 Sirohaem synthase dimerisation region KW556_13325 PF01906 Putative heavy-metal-binding KW556_13330 PF05036 Sporulation related domain KW556_13335 PF02875 Mur ligase family, glutamate ligase domain KW556_13335 PF08245 Mur ligase middle domain KW556_13340 PF17848 Acetyl-coA carboxylase zinc finger domain KW556_13340 PF01039 Carboxyl transferase domain KW556_13345 PF01416 tRNA pseudouridine synthase KW556_13355 PF01118 Semialdehyde dehydrogenase, NAD binding domain KW556_13355 PF02774 Semialdehyde dehydrogenase, dimerisation domain KW556_13360 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KW556_13360 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KW556_13360 PF11890 Domain of unknown function (DUF3410) KW556_13365 PF01569 PAP2 superfamily KW556_13370 PF00929 Exonuclease KW556_13375 PF13726 Na+-H+ antiporter family KW556_13375 PF03553 Na+/H+ antiporter family KW556_13380 PF00563 EAL domain KW556_13380 PF00990 Diguanylate cyclase, GGDEF domain KW556_13380 PF03707 Bacterial signalling protein N terminal repeat KW556_13380 PF13188 PAS domain KW556_13390 PF03880 DbpA RNA binding domain KW556_13390 PF00270 DEAD/DEAH box helicase KW556_13390 PF00271 Helicase conserved C-terminal domain KW556_13395 PF03061 Thioesterase superfamily KW556_13405 PF13183 4Fe-4S dicluster domain KW556_13405 PF01565 FAD binding domain KW556_13405 PF02913 FAD linked oxidases, C-terminal domain KW556_13415 PF03741 Integral membrane protein TerC family KW556_13415 PF03471 Transporter associated domain KW556_13420 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KW556_13425 PF08240 Alcohol dehydrogenase GroES-like domain KW556_13425 PF00107 Zinc-binding dehydrogenase KW556_13430 PF00962 Adenosine/AMP deaminase KW556_13435 PF13344 Haloacid dehalogenase-like hydrolase KW556_13440 PF00999 Sodium/hydrogen exchanger family KW556_13440 PF02254 TrkA-N domain KW556_13450 PF13537 Glutamine amidotransferase domain KW556_13450 PF00733 Asparagine synthase KW556_13460 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 KW556_13465 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit KW556_13470 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit KW556_13470 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit KW556_13480 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KW556_13480 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region KW556_13485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KW556_13485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KW556_13485 PF00384 Molybdopterin oxidoreductase KW556_13490 PF00146 NADH dehydrogenase KW556_13495 PF12838 4Fe-4S dicluster domain KW556_13500 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 KW556_13505 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KW556_13510 PF00361 Proton-conducting membrane transporter KW556_13510 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KW556_13515 PF00361 Proton-conducting membrane transporter KW556_13520 PF00361 Proton-conducting membrane transporter KW556_13530 PF00072 Response regulator receiver domain KW556_13535 PF01966 HD domain KW556_13540 PF02769 AIR synthase related protein, C-terminal domain KW556_13540 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KW556_13540 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal KW556_13545 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_13545 PF01464 Transglycosylase SLT domain KW556_13550 PF07191 zinc-ribbons KW556_13555 PF01926 50S ribosome-binding GTPase KW556_13555 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KW556_13560 PF13360 PQQ-like domain KW556_13565 PF09976 Tetratricopeptide repeat-like domain KW556_13570 PF03129 Anticodon binding domain KW556_13570 PF13393 Histidyl-tRNA synthetase KW556_13575 PF04551 GcpE protein KW556_13580 PF13464 Domain of unknown function (DUF4115) KW556_13590 PF04055 Radical SAM superfamily KW556_13595 PF00334 Nucleoside diphosphate kinase KW556_13600 PF00883 Cytosol aminopeptidase family, catalytic domain KW556_13600 PF12404 Peptidase KW556_13605 PF12404 Peptidase KW556_13605 PF00883 Cytosol aminopeptidase family, catalytic domain KW556_13610 PF01609 Transposase DDE domain KW556_13615 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_13620 PF00012 Hsp70 protein KW556_13625 PF00226 DnaJ domain KW556_13625 PF07743 HSCB C-terminal oligomerisation domain KW556_13630 PF01521 Iron-sulphur cluster biosynthesis KW556_13635 PF01592 NifU-like N terminal domain KW556_13640 PF00266 Aminotransferase class-V KW556_13645 PF02082 Transcriptional regulator KW556_13650 PF00588 SpoU rRNA Methylase family KW556_13660 PF02036 SCP-2 sterol transfer family KW556_13665 PF01136 Peptidase family U32 KW556_13670 PF01136 Peptidase family U32 KW556_13675 PF13181 Tetratricopeptide repeat KW556_13675 PF07719 Tetratricopeptide repeat KW556_13685 PF07549 SecD/SecF GG Motif KW556_13685 PF02355 Protein export membrane protein KW556_13690 PF07549 SecD/SecF GG Motif KW556_13690 PF13721 SecD export protein N-terminal TM region KW556_13690 PF02355 Protein export membrane protein KW556_13695 PF02699 Preprotein translocase subunit KW556_13700 PF01702 Queuine tRNA-ribosyltransferase KW556_13705 PF02547 Queuosine biosynthesis protein KW556_13710 PF00571 CBS domain KW556_13715 PF00578 AhpC/TSA family KW556_13715 PF10417 C-terminal domain of 1-Cys peroxiredoxin KW556_13720 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_13720 PF13192 Thioredoxin domain KW556_13750 PF01609 Transposase DDE domain KW556_13780 PF00005 ABC transporter KW556_13780 PF00664 ABC transporter transmembrane region KW556_13780 PF03412 Peptidase C39 family KW556_13785 PF04055 Radical SAM superfamily KW556_13785 PF16199 Radical_SAM C-terminal domain KW556_13790 PF04898 Glutamate synthase central domain KW556_13790 PF01493 GXGXG motif KW556_13790 PF01645 Conserved region in glutamate synthase KW556_13790 PF00310 Glutamine amidotransferases class-II KW556_13795 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_13795 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KW556_13805 PF00270 DEAD/DEAH box helicase KW556_13805 PF00271 Helicase conserved C-terminal domain KW556_13820 PF07664 Ferrous iron transport protein B C terminus KW556_13820 PF02421 Ferrous iron transport protein B KW556_13820 PF07670 Nucleoside recognition KW556_13830 PF01253 Translation initiation factor SUI1 KW556_13835 PF01169 Uncharacterized protein family UPF0016 KW556_13885 PF01406 tRNA synthetases class I (C) catalytic domain KW556_13885 PF09190 DALR domain KW556_13890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KW556_13900 PF01609 Transposase DDE domain KW556_13905 PF00149 Calcineurin-like phosphoesterase KW556_13915 PF01609 Transposase DDE domain KW556_13915 PF05598 Transposase domain (DUF772) KW556_13935 PF14659 Phage integrase, N-terminal SAM-like domain KW556_13935 PF00589 Phage integrase family KW556_13965 PF01066 CDP-alcohol phosphatidyltransferase KW556_13970 PF01541 GIY-YIG catalytic domain KW556_13970 PF02151 UvrB/uvrC motif KW556_13970 PF08459 UvrC Helix-hairpin-helix N-terminal KW556_13975 PF00196 Bacterial regulatory proteins, luxR family KW556_13975 PF00072 Response regulator receiver domain KW556_13980 PF02348 Cytidylyltransferase KW556_13985 PF03966 Trm112p-like protein KW556_13990 PF02606 Tetraacyldisaccharide-1-P 4'-kinase KW556_13995 PF00664 ABC transporter transmembrane region KW556_13995 PF00005 ABC transporter KW556_14000 PF03772 Competence protein KW556_14000 PF00753 Metallo-beta-lactamase superfamily KW556_14015 PF00155 Aminotransferase class I and II KW556_14025 PF03466 LysR substrate binding domain KW556_14025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_14030 PF04219 Protein of unknown function, DUF KW556_14035 PF03974 Ecotin KW556_14040 PF03009 Glycerophosphoryl diester phosphodiesterase family KW556_14045 PF01266 FAD dependent oxidoreductase KW556_14045 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KW556_14050 PF00455 DeoR C terminal sensor domain KW556_14050 PF08220 DeoR-like helix-turn-helix domain KW556_14055 PF07690 Major Facilitator Superfamily KW556_14060 PF01609 Transposase DDE domain KW556_14065 PF00230 Major intrinsic protein KW556_14070 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KW556_14070 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KW556_14075 PF00672 HAMP domain KW556_14075 PF02743 Cache domain KW556_14075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_14085 PF03466 LysR substrate binding domain KW556_14085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_14105 PF00248 Aldo/keto reductase family KW556_14115 PF07690 Major Facilitator Superfamily KW556_14120 PF02525 Flavodoxin-like fold KW556_14135 PF05114 Protein of unknown function (DUF692) KW556_14155 PF02322 Cytochrome bd terminal oxidase subunit II KW556_14160 PF01654 Cytochrome bd terminal oxidase subunit I KW556_14165 PF00392 Bacterial regulatory proteins, gntR family KW556_14165 PF00155 Aminotransferase class I and II KW556_14175 PF04391 Protein of unknown function (DUF533) KW556_14180 PF03061 Thioesterase superfamily KW556_14185 PF10689 Protein of unknown function (DUF2496) KW556_14190 PF03466 LysR substrate binding domain KW556_14190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_14200 PF07690 Major Facilitator Superfamily KW556_14205 PF01479 S4 domain KW556_14205 PF00849 RNA pseudouridylate synthase KW556_14245 PF02508 Rnf-Nqr subunit, membrane protein KW556_14250 PF04060 Putative Fe-S cluster KW556_14255 PF13375 RnfC Barrel sandwich hybrid domain KW556_14255 PF12838 4Fe-4S dicluster domain KW556_14255 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit KW556_14255 PF10531 SLBB domain KW556_14260 PF03116 NQR2, RnfD, RnfE family KW556_14265 PF04205 FMN-binding domain KW556_14270 PF02508 Rnf-Nqr subunit, membrane protein KW556_14275 PF00730 HhH-GPD superfamily base excision DNA repair protein KW556_14275 PF10576 Iron-sulfur binding domain of endonuclease III KW556_14275 PF00633 Helix-hairpin-helix motif KW556_14280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW556_14285 PF18393 MotY N-terminal domain KW556_14285 PF00691 OmpA family KW556_14315 PF00267 Gram-negative porin KW556_14320 PF06733 DEAD_2 KW556_14320 PF13307 Helicase C-terminal domain KW556_14330 PF00850 Histone deacetylase domain KW556_14335 PF01926 50S ribosome-binding GTPase KW556_14340 PF00245 Alkaline phosphatase KW556_14345 PF00245 Alkaline phosphatase KW556_14360 PF01272 Transcription elongation factor, GreA/GreB, C-term KW556_14360 PF14760 Rnk N-terminus KW556_14365 PF00196 Bacterial regulatory proteins, luxR family KW556_14365 PF00072 Response regulator receiver domain KW556_14370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_14370 PF07730 Histidine kinase KW556_14370 PF05231 MASE1 KW556_14375 PF07690 Major Facilitator Superfamily KW556_14380 PF00990 Diguanylate cyclase, GGDEF domain KW556_14380 PF08448 PAS fold KW556_14385 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_14390 PF00528 Binding-protein-dependent transport system inner membrane component KW556_14395 PF00005 ABC transporter KW556_14400 PF01709 Transcriptional regulator KW556_14405 PF02938 GAD domain KW556_14405 PF00152 tRNA synthetases class II (D, K and N) KW556_14405 PF01336 OB-fold nucleic acid binding domain KW556_14415 PF01904 Protein of unknown function DUF72 KW556_14420 PF13649 Methyltransferase domain KW556_14425 PF08003 Protein of unknown function (DUF1698) KW556_14445 PF00578 AhpC/TSA family KW556_14445 PF10417 C-terminal domain of 1-Cys peroxiredoxin KW556_14450 PF03466 LysR substrate binding domain KW556_14450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_14455 PF00877 NlpC/P60 family KW556_14465 PF03466 LysR substrate binding domain KW556_14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_14470 PF02447 GntP family permease KW556_14475 PF00291 Pyridoxal-phosphate dependent enzyme KW556_14485 PF00180 Isocitrate/isopropylmalate dehydrogenase KW556_14490 PF12833 Helix-turn-helix domain KW556_14495 PF01238 Phosphomannose isomerase type I KW556_14515 PF05656 Protein of unknown function (DUF805) KW556_14525 PF00034 Cytochrome c KW556_14525 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KW556_14535 PF01156 Inosine-uridine preferring nucleoside hydrolase KW556_14545 PF00171 Aldehyde dehydrogenase family KW556_14550 PF00440 Bacterial regulatory proteins, tetR family KW556_14550 PF08359 YsiA-like protein, C-terminal region KW556_14560 PF00465 Iron-containing alcohol dehydrogenase KW556_14580 PF01554 MatE KW556_14590 PF04325 Protein of unknown function (DUF465) KW556_14600 PF00563 EAL domain KW556_14600 PF00990 Diguanylate cyclase, GGDEF domain KW556_14600 PF03707 Bacterial signalling protein N terminal repeat KW556_14600 PF13188 PAS domain KW556_14605 PF04337 Protein of unknown function, DUF480 KW556_14615 PF00127 Copper binding proteins, plastocyanin/azurin family KW556_14620 PF02424 ApbE family KW556_14635 PF03372 Endonuclease/Exonuclease/phosphatase family KW556_14640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_14645 PF00873 AcrB/AcrD/AcrF family KW556_14660 PF00529 HlyD membrane-fusion protein of T1SS KW556_14660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_14665 PF00873 AcrB/AcrD/AcrF family KW556_14675 PF01497 Periplasmic binding protein KW556_14680 PF00005 ABC transporter KW556_14685 PF01032 FecCD transport family KW556_14690 PF01032 FecCD transport family KW556_14695 PF08021 Siderophore-interacting FAD-binding domain KW556_14695 PF04954 Siderophore-interacting protein KW556_14700 PF11849 Domain of unknown function (DUF3369) KW556_14710 PF00929 Exonuclease KW556_14715 PF00075 RNase H KW556_14720 PF08241 Methyltransferase domain KW556_14725 PF16123 Hydroxyacylglutathione hydrolase C-terminus KW556_14725 PF00753 Metallo-beta-lactamase superfamily KW556_14730 PF01476 LysM domain KW556_14730 PF01464 Transglycosylase SLT domain KW556_14735 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family KW556_14745 PF05472 DNA replication terminus site-binding protein (Ter protein) KW556_14750 PF00271 Helicase conserved C-terminal domain KW556_14750 PF04434 SWIM zinc finger KW556_14750 PF00176 SNF2 family N-terminal domain KW556_14755 PF00672 HAMP domain KW556_14755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_14755 PF00512 His Kinase A (phospho-acceptor) domain KW556_14760 PF00072 Response regulator receiver domain KW556_14760 PF00486 Transcriptional regulatory protein, C terminal KW556_14765 PF00529 HlyD membrane-fusion protein of T1SS KW556_14765 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_14770 PF00873 AcrB/AcrD/AcrF family KW556_14775 PF00589 Phage integrase family KW556_14775 PF13356 Arm DNA-binding domain KW556_14800 PF05973 Phage derived protein Gp49-like (DUF891) KW556_14805 PF01381 Helix-turn-helix KW556_14810 PF09588 YqaJ-like viral recombinase domain KW556_14855 PF04002 RadC-like JAB domain KW556_14900 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A KW556_14915 PF11867 Domain of unknown function (DUF3387) KW556_14915 PF18766 SWI2/SNF2 ATPase KW556_14915 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW556_14925 PF02463 RecF/RecN/SMC N terminal domain KW556_14930 PF05598 Transposase domain (DUF772) KW556_14930 PF01609 Transposase DDE domain KW556_14940 PF12161 HsdM N-terminal domain KW556_14940 PF02384 N-6 DNA Methylase KW556_14960 PF03734 L,D-transpeptidase catalytic domain KW556_14960 PF01476 LysM domain KW556_14960 PF17969 L,D-transpeptidase C-terminal domain KW556_14980 PF01156 Inosine-uridine preferring nucleoside hydrolase KW556_14985 PF00849 RNA pseudouridylate synthase KW556_14990 PF01048 Phosphorylase superfamily KW556_14995 PF00465 Iron-containing alcohol dehydrogenase KW556_15000 PF04355 SmpA / OmlA family KW556_15005 PF13460 NAD(P)H-binding KW556_15015 PF03099 Biotin/lipoate A/B protein ligase family KW556_15015 PF10437 Bacterial lipoate protein ligase C-terminus KW556_15020 PF00563 EAL domain KW556_15020 PF00990 Diguanylate cyclase, GGDEF domain KW556_15020 PF03707 Bacterial signalling protein N terminal repeat KW556_15025 PF12704 MacB-like periplasmic core domain KW556_15025 PF00005 ABC transporter KW556_15025 PF02687 FtsX-like permease family KW556_15030 PF02687 FtsX-like permease family KW556_15030 PF12704 MacB-like periplasmic core domain KW556_15030 PF00005 ABC transporter KW556_15035 PF02687 FtsX-like permease family KW556_15035 PF12704 MacB-like periplasmic core domain KW556_15035 PF00005 ABC transporter KW556_15040 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_15040 PF00529 HlyD membrane-fusion protein of T1SS KW556_15045 PF00873 AcrB/AcrD/AcrF family KW556_15060 PF04143 Sulphur transport KW556_15075 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_15085 PF02308 MgtC family KW556_15090 PF00356 Bacterial regulatory proteins, lacI family KW556_15090 PF13407 Periplasmic binding protein domain KW556_15095 PF08244 Glycosyl hydrolases family 32 C terminal KW556_15095 PF00251 Glycosyl hydrolases family 32 N-terminal domain KW556_15100 PF00367 phosphotransferase system, EIIB KW556_15100 PF02378 Phosphotransferase system, EIIC KW556_15105 PF00294 pfkB family carbohydrate kinase KW556_15110 PF02264 LamB porin KW556_15110 PF11471 Maltoporin periplasmic N-terminal extension KW556_15120 PF00571 CBS domain KW556_15120 PF01380 SIS domain KW556_15125 PF08220 DeoR-like helix-turn-helix domain KW556_15125 PF00455 DeoR C terminal sensor domain KW556_15135 PF00106 short chain dehydrogenase KW556_15140 PF03829 PTS system glucitol/sorbitol-specific IIA component KW556_15145 PF03612 Sorbitol phosphotransferase enzyme II N-terminus KW556_15145 PF07663 Sorbitol phosphotransferase enzyme II C-terminus KW556_15180 PF18623 TnsE C-terminal domain KW556_15185 PF15978 Tn7-like transposition protein D KW556_15185 PF06527 TniQ KW556_15190 PF11426 Tn7 transposition regulator TnsC KW556_15190 PF13401 AAA domain KW556_15195 PF00665 Integrase core domain KW556_15200 PF08721 TnsA endonuclease C terminal KW556_15200 PF08722 TnsA endonuclease N terminal KW556_15205 PF00684 DnaJ central domain KW556_15205 PF00226 DnaJ domain KW556_15205 PF01556 DnaJ C terminal domain KW556_15210 PF00012 Hsp70 protein KW556_15215 PF01025 GrpE KW556_15220 PF01513 ATP-NAD kinase KW556_15225 PF02463 RecF/RecN/SMC N terminal domain KW556_15230 PF01368 DHH family KW556_15230 PF02833 DHHA2 domain KW556_15235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_15240 PF00005 ABC transporter KW556_15240 PF02687 FtsX-like permease family KW556_15240 PF12704 MacB-like periplasmic core domain KW556_15245 PF02321 Outer membrane efflux protein KW556_15250 PF00816 H-NS histone family KW556_15260 PF02706 Chain length determinant protein KW556_15265 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KW556_15305 PF04321 RmlD substrate binding domain KW556_15310 PF16363 GDP-mannose 4,6 dehydratase KW556_15315 PF02719 Polysaccharide biosynthesis protein KW556_15320 PF02397 Bacterial sugar transferase KW556_15325 PF01370 NAD dependent epimerase/dehydratase family KW556_15355 PF00977 Histidine biosynthesis protein KW556_15360 PF00117 Glutamine amidotransferase class-I KW556_15375 PF02348 Cytidylyltransferase KW556_15380 PF00483 Nucleotidyl transferase KW556_15390 PF08666 SAF domain KW556_15390 PF03102 NeuB family KW556_15395 PF02350 UDP-N-acetylglucosamine 2-epimerase KW556_15400 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW556_15405 PF02719 Polysaccharide biosynthesis protein KW556_15410 PF01943 Polysaccharide biosynthesis protein KW556_15415 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KW556_15420 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_15425 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KW556_15425 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KW556_15425 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KW556_15430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KW556_15430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KW556_15435 PF00873 AcrB/AcrD/AcrF family KW556_15440 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_15440 PF00529 HlyD membrane-fusion protein of T1SS KW556_15445 PF08361 MAATS-type transcriptional repressor, C-terminal region KW556_15445 PF00440 Bacterial regulatory proteins, tetR family KW556_15460 PF02001 Protein of unknown function DUF134 KW556_15475 PF00072 Response regulator receiver domain KW556_15480 PF18693 TRAM domain KW556_15480 PF00919 Uncharacterized protein family UPF0004 KW556_15480 PF04055 Radical SAM superfamily KW556_15495 PF01797 Transposase IS200 like KW556_15525 PF00665 Integrase core domain KW556_15530 PF01695 IstB-like ATP binding protein KW556_15540 PF01381 Helix-turn-helix KW556_15545 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KW556_15590 PF01636 Phosphotransferase enzyme family KW556_15595 PF00005 ABC transporter KW556_15595 PF12848 ABC transporter KW556_15620 PF13438 Domain of unknown function (DUF4113) KW556_15620 PF00817 impB/mucB/samB family KW556_15620 PF11799 impB/mucB/samB family C-terminal domain KW556_15625 PF02321 Outer membrane efflux protein KW556_15630 PF00873 AcrB/AcrD/AcrF family KW556_15635 PF00529 HlyD membrane-fusion protein of T1SS KW556_15635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_15670 PF11799 impB/mucB/samB family C-terminal domain KW556_15670 PF00817 impB/mucB/samB family KW556_15670 PF13438 Domain of unknown function (DUF4113) KW556_15675 PF00717 Peptidase S24-like KW556_15685 PF02384 N-6 DNA Methylase KW556_15690 PF01420 Type I restriction modification DNA specificity domain KW556_15705 PF02661 Fic/DOC family KW556_15705 PF13784 Fic/DOC family N-terminal KW556_15735 PF14821 Threonine synthase N terminus KW556_15735 PF00291 Pyridoxal-phosphate dependent enzyme KW556_15740 PF00288 GHMP kinases N terminal domain KW556_15740 PF08544 GHMP kinases C terminal KW556_15745 PF13840 ACT domain KW556_15745 PF03447 Homoserine dehydrogenase, NAD binding domain KW556_15745 PF00696 Amino acid kinase family KW556_15745 PF00742 Homoserine dehydrogenase KW556_15745 PF01842 ACT domain KW556_15750 PF00588 SpoU rRNA Methylase family KW556_15755 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) KW556_15770 PF00849 RNA pseudouridylate synthase KW556_15770 PF01479 S4 domain KW556_15775 PF04079 Segregation and condensation complex subunit ScpB KW556_15780 PF02616 Segregation and condensation protein ScpA KW556_15785 PF01300 Telomere recombination KW556_15790 PF02811 PHP domain KW556_15795 PF04715 Anthranilate synthase component I, N terminal region KW556_15795 PF00425 chorismate binding enzyme KW556_15800 PF00117 Glutamine amidotransferase class-I KW556_15800 PF02885 Glycosyl transferase family, helical bundle domain KW556_15800 PF00591 Glycosyl transferase family, a/b domain KW556_15805 PF00591 Glycosyl transferase family, a/b domain KW556_15805 PF02885 Glycosyl transferase family, helical bundle domain KW556_15810 PF00218 Indole-3-glycerol phosphate synthase KW556_15810 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KW556_15815 PF00291 Pyridoxal-phosphate dependent enzyme KW556_15820 PF00290 Tryptophan synthase alpha chain KW556_15840 PF01609 Transposase DDE domain KW556_15850 PF04307 LexA-binding, inner membrane-associated putative hydrolase KW556_15870 PF01773 Na+ dependent nucleoside transporter N-terminus KW556_15870 PF07662 Na+ dependent nucleoside transporter C-terminus KW556_15870 PF07670 Nucleoside recognition KW556_15875 PF03960 ArsC family KW556_15880 PF01758 Sodium Bile acid symporter family KW556_15885 PF02374 Anion-transporting ATPase KW556_15890 PF06953 Arsenical resistance operon trans-acting repressor ArsD KW556_15910 PF03737 Aldolase/RraA KW556_15920 PF00072 Response regulator receiver domain KW556_15920 PF00486 Transcriptional regulatory protein, C terminal KW556_15935 PF00005 ABC transporter KW556_15935 PF00664 ABC transporter transmembrane region KW556_15940 PF00005 ABC transporter KW556_15940 PF00664 ABC transporter transmembrane region KW556_15960 PF18389 TrmO C-terminal domain KW556_15960 PF01980 tRNA-methyltransferase O KW556_15965 PF01292 Prokaryotic cytochrome b561 KW556_15975 PF00486 Transcriptional regulatory protein, C terminal KW556_15975 PF00072 Response regulator receiver domain KW556_15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_15985 PF03350 Uncharacterized protein family, UPF0114 KW556_16000 PF01266 FAD dependent oxidoreductase KW556_16005 PF07883 Cupin domain KW556_16005 PF01381 Helix-turn-helix KW556_16010 PF00171 Aldehyde dehydrogenase family KW556_16015 PF00202 Aminotransferase class-III KW556_16020 PF00324 Amino acid permease KW556_16030 PF00324 Amino acid permease KW556_16035 PF02690 Na+/Pi-cotransporter KW556_16040 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_16040 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW556_16050 PF04381 Putative exonuclease, RdgC KW556_16060 PF12320 Type 5 capsule protein repressor C-terminal domain KW556_16060 PF00149 Calcineurin-like phosphoesterase KW556_16065 PF13476 AAA domain KW556_16070 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase KW556_16080 PF00224 Pyruvate kinase, barrel domain KW556_16080 PF02887 Pyruvate kinase, alpha/beta domain KW556_16085 PF12794 Mechanosensitive ion channel inner membrane domain 1 KW556_16085 PF12795 Mechanosensitive ion channel porin domain KW556_16085 PF00924 Mechanosensitive ion channel KW556_16095 PF05649 Peptidase family M13 KW556_16095 PF01431 Peptidase family M13 KW556_16100 PF00990 Diguanylate cyclase, GGDEF domain KW556_16100 PF08448 PAS fold KW556_16105 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KW556_16110 PF05524 PEP-utilising enzyme, N-terminal KW556_16110 PF00391 PEP-utilising enzyme, mobile domain KW556_16110 PF02896 PEP-utilising enzyme, TIM barrel domain KW556_16115 PF00381 PTS HPr component phosphorylation site KW556_16120 PF00291 Pyridoxal-phosphate dependent enzyme KW556_16125 PF00004 ATPase family associated with various cellular activities (AAA) KW556_16125 PF01434 Peptidase family M41 KW556_16125 PF17862 AAA+ lid domain KW556_16145 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW556_16145 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW556_16150 PF01966 HD domain KW556_16150 PF00672 HAMP domain KW556_16155 PF01471 Putative peptidoglycan binding domain KW556_16155 PF13401 AAA domain KW556_16160 PF16537 Type II secretion system protein B KW556_16165 PF11356 Type II secretion system protein C KW556_16170 PF03958 Bacterial type II/III secretion system short domain KW556_16170 PF00263 Bacterial type II and III secretion system protein KW556_16175 PF00437 Type II/IV secretion system protein KW556_16180 PF00482 Type II secretion system (T2SS), protein F KW556_16185 PF07963 Prokaryotic N-terminal methylation motif KW556_16185 PF08334 Type II secretion system (T2SS), protein G KW556_16190 PF12019 Type II transport protein GspH KW556_16190 PF07963 Prokaryotic N-terminal methylation motif KW556_16195 PF02501 Type II secretion system (T2SS), protein I KW556_16195 PF07963 Prokaryotic N-terminal methylation motif KW556_16200 PF07963 Prokaryotic N-terminal methylation motif KW556_16200 PF11612 Type II secretion system (T2SS), protein J KW556_16205 PF03934 Type II secretion system (T2SS), protein K KW556_16210 PF05134 Type II secretion system (T2SS), protein L KW556_16210 PF12693 GspL periplasmic domain KW556_16215 PF04612 Type II secretion system (T2SS), protein M KW556_16220 PF01203 Type II secretion system (T2SS), protein N KW556_16225 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_16245 PF00232 Glycosyl hydrolase family 1 KW556_16250 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KW556_16255 PF07883 Cupin domain KW556_16255 PF12833 Helix-turn-helix domain KW556_16260 PF11975 Family 4 glycosyl hydrolase C-terminal domain KW556_16260 PF02056 Family 4 glycosyl hydrolase KW556_16265 PF04794 YdjC-like protein KW556_16270 PF00589 Phage integrase family KW556_16270 PF13356 Arm DNA-binding domain KW556_16280 PF05930 Prophage CP4-57 regulatory protein (AlpA) KW556_16300 PF09588 YqaJ-like viral recombinase domain KW556_16345 PF04002 RadC-like JAB domain KW556_16395 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A KW556_16400 PF02384 N-6 DNA Methylase KW556_16415 PF02463 RecF/RecN/SMC N terminal domain KW556_16430 PF01027 Inhibitor of apoptosis-promoting Bax1 KW556_16435 PF12805 FUSC-like inner membrane protein yccS KW556_16440 PF04358 DsrC like protein KW556_16445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KW556_16450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_16450 PF03466 LysR substrate binding domain KW556_16505 PF04055 Radical SAM superfamily KW556_16505 PF08497 Radical SAM N-terminal KW556_16505 PF11842 Domain of unknown function (DUF3362) KW556_16510 PF00873 AcrB/AcrD/AcrF family KW556_16515 PF00529 HlyD membrane-fusion protein of T1SS KW556_16515 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_16520 PF17158 Membrane-associated sensor, integral membrane domain KW556_16520 PF00990 Diguanylate cyclase, GGDEF domain KW556_16525 PF01734 Patatin-like phospholipase KW556_16530 PF13520 Amino acid permease KW556_16545 PF00691 OmpA family KW556_16545 PF01389 OmpA-like transmembrane domain KW556_16550 PF00691 OmpA family KW556_16550 PF01389 OmpA-like transmembrane domain KW556_16555 PF00691 OmpA family KW556_16555 PF01389 OmpA-like transmembrane domain KW556_16560 PF00390 Malic enzyme, N-terminal domain KW556_16560 PF03949 Malic enzyme, NAD binding domain KW556_16565 PF12833 Helix-turn-helix domain KW556_16570 PF01554 MatE KW556_16575 PF10692 Protein of unknown function (DUF2498) KW556_16580 PF00990 Diguanylate cyclase, GGDEF domain KW556_16585 PF00860 Permease family KW556_16595 PF01235 Sodium:alanine symporter family KW556_16600 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KW556_16600 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KW556_16605 PF01699 Sodium/calcium exchanger protein KW556_16610 PF08534 Redoxin KW556_16620 PF00293 NUDIX domain KW556_16635 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW556_16635 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_16640 PF03932 CutC family KW556_16645 PF00480 ROK family KW556_16655 PF01435 Peptidase family M48 KW556_16660 PF12849 PBP superfamily domain KW556_16665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_16665 PF00512 His Kinase A (phospho-acceptor) domain KW556_16665 PF00989 PAS fold KW556_16665 PF11808 Phosphate regulon sensor protein PhoR KW556_16670 PF00072 Response regulator receiver domain KW556_16670 PF00486 Transcriptional regulatory protein, C terminal KW556_16675 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KW556_16680 PF02954 Bacterial regulatory protein, Fis family KW556_16680 PF00158 Sigma-54 interaction domain KW556_16680 PF01590 GAF domain KW556_16685 PF00171 Aldehyde dehydrogenase family KW556_16695 PF00892 EamA-like transporter family KW556_16700 PF12431 Transcriptional regulator KW556_16700 PF00072 Response regulator receiver domain KW556_16705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_16705 PF00989 PAS fold KW556_16705 PF17203 Single cache domain 3 KW556_16705 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KW556_16710 PF03949 Malic enzyme, NAD binding domain KW556_16710 PF00390 Malic enzyme, N-terminal domain KW556_16715 PF03390 2-hydroxycarboxylate transporter family KW556_16725 PF01047 MarR family KW556_16730 PF00529 HlyD membrane-fusion protein of T1SS KW556_16730 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_16755 PF01679 Proteolipid membrane potential modulator KW556_16765 PF03477 ATP cone domain KW556_16765 PF13597 Anaerobic ribonucleoside-triphosphate reductase KW556_16775 PF00533 BRCA1 C Terminus (BRCT) domain KW556_16775 PF01653 NAD-dependent DNA ligase adenylation domain KW556_16775 PF03120 NAD-dependent DNA ligase OB-fold domain KW556_16775 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KW556_16775 PF12826 Helix-hairpin-helix motif KW556_16780 PF04354 ZipA, C-terminal FtsZ-binding domain KW556_16785 PF06470 SMC proteins Flexible Hinge Domain KW556_16785 PF02463 RecF/RecN/SMC N terminal domain KW556_16795 PF03458 UPF0126 domain KW556_16805 PF05951 Bacterial protein of unknown function (DUF882) KW556_16810 PF01471 Putative peptidoglycan binding domain KW556_16810 PF03734 L,D-transpeptidase catalytic domain KW556_16825 PF00535 Glycosyl transferase family 2 KW556_16840 PF00128 Alpha amylase, catalytic domain KW556_16850 PF00196 Bacterial regulatory proteins, luxR family KW556_16850 PF00072 Response regulator receiver domain KW556_16870 PF00999 Sodium/hydrogen exchanger family KW556_16870 PF02080 TrkA-C domain KW556_16870 PF02254 TrkA-N domain KW556_16875 PF00990 Diguanylate cyclase, GGDEF domain KW556_16880 PF01171 PP-loop family KW556_16880 PF09179 TilS substrate binding domain KW556_16880 PF11734 TilS substrate C-terminal domain KW556_16885 PF05649 Peptidase family M13 KW556_16885 PF01431 Peptidase family M13 KW556_16895 PF08543 Phosphomethylpyrimidine kinase KW556_16900 PF01276 Orn/Lys/Arg decarboxylase, major domain KW556_16900 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KW556_16900 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain KW556_16905 PF13520 Amino acid permease KW556_16910 PF18500 CadC C-terminal domain 1 KW556_16910 PF00486 Transcriptional regulatory protein, C terminal KW556_16915 PF13520 Amino acid permease KW556_16920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_16920 PF03466 LysR substrate binding domain KW556_16925 PF12706 Beta-lactamase superfamily domain KW556_16950 PF03466 LysR substrate binding domain KW556_16950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_16960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_16960 PF00205 Thiamine pyrophosphate enzyme, central domain KW556_16960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW556_16965 PF03306 Alpha-acetolactate decarboxylase KW556_16970 PF03466 LysR substrate binding domain KW556_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_16975 PF00579 tRNA synthetases class I (W and Y) KW556_16980 PF08525 Opacity-associated protein A N-terminal motif KW556_16980 PF01551 Peptidase family M23 KW556_16980 PF01476 LysM domain KW556_16985 PF03702 Anhydro-N-acetylmuramic acid kinase KW556_17005 PF02779 Transketolase, pyrimidine binding domain KW556_17005 PF02780 Transketolase, C-terminal domain KW556_17005 PF00456 Transketolase, thiamine diphosphate binding domain KW556_17010 PF02773 S-adenosylmethionine synthetase, C-terminal domain KW556_17010 PF02772 S-adenosylmethionine synthetase, central domain KW556_17010 PF00438 S-adenosylmethionine synthetase, N-terminal domain KW556_17015 PF10263 SprT-like family KW556_17015 PF17283 SprT-like zinc ribbon domain KW556_17020 PF04231 Endonuclease I KW556_17025 PF04452 RNA methyltransferase KW556_17030 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain KW556_17030 PF02951 Prokaryotic glutathione synthetase, N-terminal domain KW556_17035 PF02622 Uncharacterized ACR, COG1678 KW556_17040 PF03652 Holliday junction resolvase KW556_17045 PF00854 POT family KW556_17050 PF03466 LysR substrate binding domain KW556_17050 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_17055 PF07690 Major Facilitator Superfamily KW556_17060 PF17863 AAA lid domain KW556_17060 PF07726 ATPase family associated with various cellular activities (AAA) KW556_17070 PF11992 Domain of unknown function (DUF3488) KW556_17070 PF13559 Domain of unknown function (DUF4129) KW556_17070 PF01841 Transglutaminase-like superfamily KW556_17075 PF01235 Sodium:alanine symporter family KW556_17080 PF00923 Transaldolase/Fructose-6-phosphate aldolase KW556_17090 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KW556_17095 PF01336 OB-fold nucleic acid binding domain KW556_17095 PF02811 PHP domain KW556_17095 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KW556_17095 PF07733 Bacterial DNA polymerase III alpha NTPase domain KW556_17095 PF14579 Helix-hairpin-helix motif KW556_17100 PF01351 Ribonuclease HII KW556_17105 PF02684 Lipid-A-disaccharide synthetase KW556_17110 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 KW556_17110 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_17115 PF07977 FabA-like domain KW556_17120 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD KW556_17120 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_17125 PF03938 Outer membrane protein (OmpH-like) KW556_17130 PF01103 Surface antigen KW556_17130 PF07244 Surface antigen variable number repeat KW556_17135 PF17820 PDZ domain KW556_17135 PF02163 Peptidase family M50 KW556_17140 PF13288 DXP reductoisomerase C-terminal domain KW556_17140 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KW556_17140 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KW556_17150 PF01255 Putative undecaprenyl diphosphate synthase KW556_17155 PF01765 Ribosome recycling factor KW556_17160 PF00696 Amino acid kinase family KW556_17165 PF00889 Elongation factor TS KW556_17170 PF00318 Ribosomal protein S2 KW556_17175 PF00557 Metallopeptidase family M24 KW556_17180 PF01909 Nucleotidyltransferase domain KW556_17180 PF01842 ACT domain KW556_17180 PF08335 GlnD PII-uridylyltransferase KW556_17180 PF01966 HD domain KW556_17185 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal KW556_17185 PF14602 Hexapeptide repeat of succinyl-transferase KW556_17185 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_17190 PF11944 Protein of unknown function (DUF3461) KW556_17195 PF00367 phosphotransferase system, EIIB KW556_17195 PF02378 Phosphotransferase system, EIIC KW556_17200 PF07148 Maltose operon periplasmic protein precursor (MalM) KW556_17210 PF00258 Flavodoxin KW556_17215 PF00849 RNA pseudouridylate synthase KW556_17220 PF04287 tRNA pseudouridine synthase C KW556_17245 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) KW556_17250 PF07348 Syd protein (SUKH-2) KW556_17255 PF14489 QueF-like protein KW556_17255 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term KW556_17265 PF00990 Diguanylate cyclase, GGDEF domain KW556_17270 PF03641 Possible lysine decarboxylase KW556_17270 PF11892 Domain of unknown function (DUF3412) KW556_17270 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases KW556_17275 PF01367 5'-3' exonuclease, C-terminal SAM fold KW556_17275 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KW556_17280 PF00180 Isocitrate/isopropylmalate dehydrogenase KW556_17280 PF18324 Hypothetical protein TT1725 KW556_17290 PF18125 RlmM ferredoxin-like domain KW556_17290 PF01728 FtsJ-like methyltransferase KW556_17295 PF04241 Protein of unknown function (DUF423) KW556_17305 PF03466 LysR substrate binding domain KW556_17305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_17310 PF00672 HAMP domain KW556_17310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_17315 PF00817 impB/mucB/samB family KW556_17315 PF11798 IMS family HHH motif KW556_17315 PF11799 impB/mucB/samB family C-terminal domain KW556_17325 PF01965 DJ-1/PfpI family KW556_17330 PF02558 Ketopantoate reductase PanE/ApbA KW556_17330 PF08546 Ketopantoate reductase PanE/ApbA C terminal KW556_17335 PF04461 Protein of unknown function (DUF520) KW556_17340 PF03502 Nucleoside-specific channel-forming protein, Tsx KW556_17345 PF07690 Major Facilitator Superfamily KW556_17350 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KW556_17360 PF05175 Methyltransferase small domain KW556_17365 PF01722 BolA-like protein KW556_17370 PF11973 NQRA C-terminal domain KW556_17370 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) KW556_17375 PF03116 NQR2, RnfD, RnfE family KW556_17380 PF04205 FMN-binding domain KW556_17385 PF02508 Rnf-Nqr subunit, membrane protein KW556_17390 PF02508 Rnf-Nqr subunit, membrane protein KW556_17395 PF00970 Oxidoreductase FAD-binding domain KW556_17395 PF00111 2Fe-2S iron-sulfur cluster binding domain KW556_17395 PF00175 Oxidoreductase NAD-binding domain KW556_17400 PF02424 ApbE family KW556_17445 PF00106 short chain dehydrogenase KW556_17455 PF00875 DNA photolyase KW556_17455 PF03441 FAD binding domain of DNA photolyase KW556_17460 PF13411 MerR HTH family regulatory protein KW556_17465 PF08349 Protein of unknown function (DUF1722) KW556_17480 PF06508 Queuosine biosynthesis protein QueC KW556_17495 PF01817 Chorismate mutase type II KW556_17495 PF00800 Prephenate dehydratase KW556_17525 PF09588 YqaJ-like viral recombinase domain KW556_17540 PF13610 DDE domain KW556_17550 PF00809 Pterin binding enzyme KW556_17555 PF00893 Small Multidrug Resistance protein KW556_17560 PF13427 Domain of unknown function (DUF4111) KW556_17560 PF01909 Nucleotidyltransferase domain KW556_17565 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_17570 PF00905 Penicillin binding protein transpeptidase domain KW556_17580 PF13495 Phage integrase, N-terminal SAM-like domain KW556_17580 PF00589 Phage integrase family KW556_17585 PF00239 Resolvase, N terminal domain KW556_17585 PF02796 Helix-turn-helix domain of resolvase KW556_17595 PF01526 Tn3 transposase DDE domain KW556_17595 PF13700 Domain of unknown function (DUF4158) KW556_17600 PF01636 Phosphotransferase enzyme family KW556_17605 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase KW556_17615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_17615 PF03466 LysR substrate binding domain KW556_17620 PF07690 Major Facilitator Superfamily KW556_17655 PF00144 Beta-lactamase KW556_17670 PF13495 Phage integrase, N-terminal SAM-like domain KW556_17670 PF00589 Phage integrase family KW556_17675 PF00239 Resolvase, N terminal domain KW556_17675 PF02796 Helix-turn-helix domain of resolvase KW556_17685 PF01381 Helix-turn-helix KW556_17700 PF00376 MerR family regulatory protein KW556_17700 PF09278 MerR, DNA binding KW556_17725 PF02463 RecF/RecN/SMC N terminal domain KW556_17780 PF00665 Integrase core domain KW556_17785 PF01695 IstB-like ATP binding protein KW556_17800 PF05638 Type VI secretion system effector, Hcp KW556_17815 PF13657 HipA N-terminal domain KW556_17815 PF07804 HipA-like C-terminal domain KW556_17825 PF00589 Phage integrase family KW556_17825 PF02899 Phage integrase, N-terminal SAM-like domain KW556_17860 PF02481 DNA recombination-mediator protein A KW556_17860 PF17782 DprA winged helix domain KW556_17885 PF02384 N-6 DNA Methylase KW556_17890 PF01609 Transposase DDE domain KW556_17910 PF01381 Helix-turn-helix KW556_17920 PF06527 TniQ KW556_17920 PF15978 Tn7-like transposition protein D KW556_17925 PF13401 AAA domain KW556_17925 PF11426 Tn7 transposition regulator TnsC KW556_17930 PF00665 Integrase core domain KW556_17935 PF08721 TnsA endonuclease C terminal KW556_17935 PF08722 TnsA endonuclease N terminal KW556_17970 PF13599 Pentapeptide repeats (9 copies) KW556_17995 PF13700 Domain of unknown function (DUF4158) KW556_17995 PF01526 Tn3 transposase DDE domain KW556_18000 PF00239 Resolvase, N terminal domain KW556_18000 PF02796 Helix-turn-helix domain of resolvase KW556_18005 PF13495 Phage integrase, N-terminal SAM-like domain KW556_18005 PF00589 Phage integrase family KW556_18020 PF00005 ABC transporter KW556_18045 PF04002 RadC-like JAB domain KW556_18080 PF00239 Resolvase, N terminal domain KW556_18080 PF02796 Helix-turn-helix domain of resolvase KW556_18085 PF00589 Phage integrase family KW556_18085 PF13495 Phage integrase, N-terminal SAM-like domain KW556_18090 PF13610 DDE domain KW556_18095 PF01636 Phosphotransferase enzyme family KW556_18110 PF13610 DDE domain KW556_18115 PF03551 Transcriptional regulator PadR-like family KW556_18125 PF01609 Transposase DDE domain KW556_18130 PF02371 Transposase IS116/IS110/IS902 family KW556_18130 PF01548 Transposase KW556_18140 PF00809 Pterin binding enzyme KW556_18145 PF00893 Small Multidrug Resistance protein KW556_18150 PF00186 Dihydrofolate reductase KW556_18175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18180 PF13609 Gram-negative porin KW556_18195 PF00106 short chain dehydrogenase KW556_18220 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KW556_18250 PF07963 Prokaryotic N-terminal methylation motif KW556_18250 PF00114 Pilin (bacterial filament) KW556_18255 PF00730 HhH-GPD superfamily base excision DNA repair protein KW556_18255 PF12833 Helix-turn-helix domain KW556_18255 PF02805 Metal binding domain of Ada KW556_18255 PF06029 AlkA N-terminal domain KW556_18260 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KW556_18260 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KW556_18265 PF12392 Collagenase KW556_18265 PF01136 Peptidase family U32 KW556_18270 PF01810 LysE type translocator KW556_18275 PF03466 LysR substrate binding domain KW556_18275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_18280 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KW556_18280 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KW556_18285 PF02743 Cache domain KW556_18285 PF00672 HAMP domain KW556_18285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18290 PF00072 Response regulator receiver domain KW556_18295 PF01609 Transposase DDE domain KW556_18305 PF02895 Signal transducing histidine kinase, homodimeric domain KW556_18305 PF01584 CheW-like domain KW556_18305 PF07194 P2 response regulator binding domain KW556_18305 PF01627 Hpt domain KW556_18305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_18310 PF12729 Four helix bundle sensory module for signal transduction KW556_18310 PF00672 HAMP domain KW556_18310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18315 PF01584 CheW-like domain KW556_18320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18320 PF00672 HAMP domain KW556_18325 PF03705 CheR methyltransferase, all-alpha domain KW556_18325 PF01739 CheR methyltransferase, SAM binding domain KW556_18330 PF03975 CheD chemotactic sensory transduction KW556_18335 PF00072 Response regulator receiver domain KW556_18335 PF01339 CheB methylesterase KW556_18340 PF12832 MFS_1 like family KW556_18345 PF07715 TonB-dependent Receptor Plug Domain KW556_18345 PF00593 TonB dependent receptor KW556_18365 PF01243 Pyridoxamine 5'-phosphate oxidase KW556_18370 PF06228 Haem utilisation ChuX/HutX KW556_18380 PF01032 FecCD transport family KW556_18385 PF00005 ABC transporter KW556_18395 PF06580 Histidine kinase KW556_18395 PF07694 5TMR of 5TMR-LYT KW556_18400 PF04397 LytTr DNA-binding domain KW556_18400 PF00072 Response regulator receiver domain KW556_18405 PF13722 5TM C-terminal transporter carbon starvation CstA KW556_18405 PF02554 Carbon starvation protein CstA KW556_18410 PF03575 Peptidase family S51 KW556_18415 PF01894 Uncharacterised protein family UPF0047 KW556_18420 PF01168 Alanine racemase, N-terminal domain KW556_18420 PF00842 Alanine racemase, C-terminal domain KW556_18425 PF00772 DnaB-like helicase N terminal domain KW556_18425 PF03796 DnaB-like helicase C terminal domain KW556_18435 PF02872 5'-nucleotidase, C-terminal domain KW556_18435 PF00149 Calcineurin-like phosphoesterase KW556_18455 PF00158 Sigma-54 interaction domain KW556_18455 PF00072 Response regulator receiver domain KW556_18455 PF02954 Bacterial regulatory protein, Fis family KW556_18460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_18460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase KW556_18470 PF04102 SlyX KW556_18475 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_18480 PF09526 Probable metal-binding protein (DUF2387) KW556_18490 PF00072 Response regulator receiver domain KW556_18490 PF01584 CheW-like domain KW556_18495 PF00561 alpha/beta hydrolase fold KW556_18500 PF00360 Phytochrome region KW556_18500 PF00990 Diguanylate cyclase, GGDEF domain KW556_18500 PF00563 EAL domain KW556_18500 PF01590 GAF domain KW556_18505 PF06794 Uncharacterised protein family (UPF0270) KW556_18510 PF00485 Phosphoribulokinase / Uridine kinase family KW556_18525 PF02566 OsmC-like protein KW556_18530 PF00027 Cyclic nucleotide-binding domain KW556_18530 PF13545 Crp-like helix-turn-helix domain KW556_18535 PF08241 Methyltransferase domain KW556_18540 PF00267 Gram-negative porin KW556_18550 PF00582 Universal stress protein family KW556_18565 PF00294 pfkB family carbohydrate kinase KW556_18570 PF04227 Indigoidine synthase A like protein KW556_18575 PF00194 Eukaryotic-type carbonic anhydrase KW556_18580 PF00561 alpha/beta hydrolase fold KW556_18600 PF06877 Regulator of ribonuclease activity B KW556_18620 PF06826 Predicted Permease Membrane Region KW556_18620 PF02080 TrkA-C domain KW556_18625 PF03006 Haemolysin-III related KW556_18630 PF00282 Pyridoxal-dependent decarboxylase conserved domain KW556_18635 PF04279 Intracellular septation protein A KW556_18640 PF03795 YCII-related domain KW556_18645 PF00459 Inositol monophosphatase family KW556_18650 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ KW556_18655 PF02565 Recombination protein O C terminal KW556_18655 PF11967 Recombination protein O N terminal KW556_18660 PF07650 KH domain KW556_18660 PF01926 50S ribosome-binding GTPase KW556_18665 PF00035 Double-stranded RNA binding motif KW556_18665 PF14622 Ribonuclease-III-like KW556_18670 PF10502 Signal peptidase, peptidase S26 KW556_18675 PF00679 Elongation factor G C-terminus KW556_18675 PF00009 Elongation factor Tu GTP binding domain KW556_18675 PF03144 Elongation factor Tu domain 2 KW556_18675 PF06421 GTP-binding protein LepA C-terminus KW556_18685 PF17188 MucB/RseB C-terminal domain KW556_18685 PF03888 MucB/RseB N-terminal domain KW556_18690 PF03872 Anti sigma-E protein RseA, N-terminal domain KW556_18690 PF03873 Anti sigma-E protein RseA, C-terminal domain KW556_18695 PF04542 Sigma-70 region 2 KW556_18695 PF08281 Sigma-70, region 4 KW556_18700 PF00890 FAD binding domain KW556_18700 PF02910 Fumarate reductase flavoprotein C-term KW556_18710 PF03937 Flavinator of succinate dehydrogenase KW556_18715 PF01571 Aminomethyltransferase folate-binding domain KW556_18720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_18720 PF03466 LysR substrate binding domain KW556_18735 PF03091 CutA1 divalent ion tolerance protein KW556_18740 PF02683 Cytochrome C biogenesis protein transmembrane region KW556_18740 PF11412 Disulphide bond corrector protein DsbC KW556_18760 PF01266 FAD dependent oxidoreductase KW556_18765 PF01116 Fructose-bisphosphate aldolase class-II KW556_18770 PF00162 Phosphoglycerate kinase KW556_18775 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KW556_18775 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KW556_18780 PF00480 ROK family KW556_18785 PF01208 Uroporphyrinogen decarboxylase (URO-D) KW556_18790 PF00293 NUDIX domain KW556_18790 PF09297 NADH pyrophosphatase zinc ribbon domain KW556_18795 PF00171 Aldehyde dehydrogenase family KW556_18795 PF01619 Proline dehydrogenase KW556_18795 PF14850 DNA-binding domain of Proline dehydrogenase KW556_18795 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KW556_18800 PF08239 Bacterial SH3 domain KW556_18805 PF00027 Cyclic nucleotide-binding domain KW556_18805 PF00520 Ion transport protein KW556_18810 PF00672 HAMP domain KW556_18810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18810 PF02743 Cache domain KW556_18815 PF00749 tRNA synthetases class I (E and Q), catalytic domain KW556_18820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_18820 PF00672 HAMP domain KW556_18830 PF00313 'Cold-shock' DNA-binding domain KW556_18870 PF00929 Exonuclease KW556_18875 PF03193 RsgA GTPase KW556_18880 PF02666 Phosphatidylserine decarboxylase KW556_18885 PF09905 DNA-binding protein VF530 KW556_18900 PF00171 Aldehyde dehydrogenase family KW556_18905 PF01472 PUA domain KW556_18905 PF00696 Amino acid kinase family KW556_18910 PF07417 Sigma factor-binding transcriptional regulator Crl KW556_18915 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) KW556_18920 PF00156 Phosphoribosyl transferase domain KW556_18925 PF01546 Peptidase family M20/M25/M40 KW556_18925 PF07687 Peptidase dimerisation domain KW556_18930 PF05099 Tellurite resistance protein TerB KW556_18930 PF00226 DnaJ domain KW556_18935 PF00483 Nucleotidyl transferase KW556_18940 PF01636 Phosphotransferase enzyme family KW556_18945 PF04453 LPS transport system D KW556_18945 PF03968 OstA-like protein KW556_18950 PF00639 PPIC-type PPIASE domain KW556_18950 PF09312 SurA N-terminal domain KW556_18955 PF04166 Pyridoxal phosphate biosynthetic protein PdxA KW556_18960 PF00398 Ribosomal RNA adenine dimethylase KW556_18965 PF04379 ApaG domain KW556_18970 PF00149 Calcineurin-like phosphoesterase KW556_18985 PF00296 Luciferase-like monooxygenase KW556_19000 PF07670 Nucleoside recognition KW556_19005 PF01018 GTP1/OBG KW556_19005 PF01926 50S ribosome-binding GTPase KW556_19010 PF01016 Ribosomal L27 protein KW556_19015 PF00829 Ribosomal prokaryotic L21 protein KW556_19020 PF00348 Polyprenyl synthetase KW556_19025 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) KW556_19030 PF01145 SPFH domain / Band 7 family KW556_19035 PF01145 SPFH domain / Band 7 family KW556_19035 PF12221 Bacterial membrane protein N terminal KW556_19040 PF01926 50S ribosome-binding GTPase KW556_19040 PF13167 GTP-binding GTPase N-terminal KW556_19040 PF16360 GTP-binding GTPase Middle Region KW556_19045 PF17209 Hfq protein KW556_19055 PF01119 DNA mismatch repair protein, C-terminal domain KW556_19055 PF08676 MutL C terminal dimerisation domain KW556_19060 PF01520 N-acetylmuramoyl-L-alanine amidase KW556_19065 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KW556_19070 PF01256 Carbohydrate kinase KW556_19070 PF03853 YjeF-related protein N-terminus KW556_19075 PF08331 Domain of unknown function (DUF1730) KW556_19080 PF00480 ROK family KW556_19090 PF00005 ABC transporter KW556_19090 PF09383 NIL domain KW556_19095 PF00528 Binding-protein-dependent transport system inner membrane component KW556_19100 PF03180 NLPA lipoprotein KW556_19105 PF02357 Transcription termination factor nusG KW556_19110 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_19110 PF00672 HAMP domain KW556_19115 PF03707 Bacterial signalling protein N terminal repeat KW556_19115 PF00990 Diguanylate cyclase, GGDEF domain KW556_19115 PF00563 EAL domain KW556_19120 PF00512 His Kinase A (phospho-acceptor) domain KW556_19120 PF00072 Response regulator receiver domain KW556_19120 PF09456 RcsC Alpha-Beta-Loop (ABL) KW556_19120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_19130 PF01966 HD domain KW556_19130 PF13286 Phosphohydrolase-associated domain KW556_19135 PF18415 Histidine kinase receptor ArcB trans-membrane domain KW556_19135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_19135 PF00512 His Kinase A (phospho-acceptor) domain KW556_19135 PF01627 Hpt domain KW556_19135 PF00989 PAS fold KW556_19135 PF00072 Response regulator receiver domain KW556_19155 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) KW556_19160 PF03466 LysR substrate binding domain KW556_19160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_19170 PF01259 SAICAR synthetase KW556_19175 PF06804 NlpB/DapX lipoprotein KW556_19180 PF00701 Dihydrodipicolinate synthetase family KW556_19185 PF01842 ACT domain KW556_19190 PF00578 AhpC/TSA family KW556_19195 PF03887 YfbU domain KW556_19200 PF04217 Protein of unknown function, DUF412 KW556_19205 PF00871 Acetokinase family KW556_19210 PF01515 Phosphate acetyl/butaryl transferase KW556_19210 PF07085 DRTGG domain KW556_19220 PF00483 Nucleotidyl transferase KW556_19225 PF00854 POT family KW556_19230 PF00072 Response regulator receiver domain KW556_19260 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KW556_19265 PF02321 Outer membrane efflux protein KW556_19270 PF01207 Dihydrouridine synthase (Dus) KW556_19275 PF02954 Bacterial regulatory protein, Fis family KW556_19310 PF11799 impB/mucB/samB family C-terminal domain KW556_19310 PF13438 Domain of unknown function (DUF4113) KW556_19310 PF00817 impB/mucB/samB family KW556_19310 PF11798 IMS family HHH motif KW556_19315 PF00717 Peptidase S24-like KW556_19320 PF04539 Sigma-70 region 3 KW556_19320 PF03979 Sigma-70 factor, region 1.1 KW556_19320 PF00140 Sigma-70 factor, region 1.2 KW556_19320 PF04542 Sigma-70 region 2 KW556_19320 PF04545 Sigma-70, region 4 KW556_19325 PF01119 DNA mismatch repair protein, C-terminal domain KW556_19325 PF08676 MutL C terminal dimerisation domain KW556_19335 PF01609 Transposase DDE domain KW556_19370 PF10369 Small subunit of acetolactate synthase KW556_19375 PF00205 Thiamine pyrophosphate enzyme, central domain KW556_19375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_19375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW556_19390 PF01569 PAP2 superfamily KW556_19400 PF08502 LeuA allosteric (dimerisation) domain KW556_19400 PF00682 HMGL-like KW556_19405 PF00180 Isocitrate/isopropylmalate dehydrogenase KW556_19410 PF00330 Aconitase family (aconitate hydratase) KW556_19415 PF00694 Aconitase C-terminal domain KW556_19435 PF00528 Binding-protein-dependent transport system inner membrane component KW556_19440 PF00005 ABC transporter KW556_19445 PF02562 PhoH-like protein KW556_19445 PF13638 PIN domain KW556_19455 PF02867 Ribonucleotide reductase, barrel domain KW556_19455 PF00317 Ribonucleotide reductase, all-alpha domain KW556_19455 PF08343 Ribonucleotide reductase N-terminal KW556_19495 PF00990 Diguanylate cyclase, GGDEF domain KW556_19495 PF03707 Bacterial signalling protein N terminal repeat KW556_19495 PF00563 EAL domain KW556_19505 PF00118 TCP-1/cpn60 chaperonin family KW556_19510 PF00166 Chaperonin 10 Kd subunit KW556_19515 PF01554 MatE KW556_19520 PF04186 FxsA cytoplasmic membrane protein KW556_19525 PF00206 Lyase KW556_19525 PF10415 Fumarase C C-terminus KW556_19530 PF03605 Anaerobic c4-dicarboxylate membrane transporter KW556_19535 PF00814 Glycoprotease family KW556_19540 PF01165 Ribosomal protein S21 KW556_19545 PF09424 Yqey-like protein KW556_19550 PF01807 CHC2 zinc finger KW556_19550 PF08275 DNA primase catalytic core, N-terminal domain KW556_19550 PF08278 DNA primase DnaG DnaB-binding KW556_19550 PF10410 DnaB-helicase binding domain of primase KW556_19555 PF04539 Sigma-70 region 3 KW556_19555 PF04542 Sigma-70 region 2 KW556_19555 PF04545 Sigma-70, region 4 KW556_19555 PF04546 Sigma-70, non-essential region KW556_19555 PF03979 Sigma-70 factor, region 1.1 KW556_19555 PF00140 Sigma-70 factor, region 1.2 KW556_19565 PF00589 Phage integrase family KW556_19565 PF13356 Arm DNA-binding domain KW556_19640 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KW556_19640 PF02843 Phosphoribosylglycinamide synthetase, C domain KW556_19640 PF02844 Phosphoribosylglycinamide synthetase, N domain KW556_19645 PF01808 AICARFT/IMPCHase bienzyme KW556_19645 PF02142 MGS-like domain KW556_19650 PF13411 MerR HTH family regulatory protein KW556_19655 PF03889 Alternative ribosome-rescue factor A KW556_19660 PF06969 HemN C-terminal domain KW556_19660 PF04055 Radical SAM superfamily KW556_19665 PF01725 Ham1 family KW556_19670 PF07690 Major Facilitator Superfamily KW556_19675 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KW556_19675 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KW556_19685 PF13302 Acetyltransferase (GNAT) domain KW556_19690 PF13302 Acetyltransferase (GNAT) domain KW556_19695 PF01447 Thermolysin metallopeptidase, catalytic domain KW556_19695 PF07504 Fungalysin/Thermolysin Propeptide Motif KW556_19695 PF03413 Peptidase propeptide and YPEB domain KW556_19695 PF04151 Bacterial pre-peptidase C-terminal domain KW556_19695 PF02868 Thermolysin metallopeptidase, alpha-helical domain KW556_19700 PF03466 LysR substrate binding domain KW556_19700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_19705 PF07690 Major Facilitator Superfamily KW556_19710 PF00583 Acetyltransferase (GNAT) family KW556_19720 PF00009 Elongation factor Tu GTP binding domain KW556_19720 PF03144 Elongation factor Tu domain 2 KW556_19720 PF16658 Class II release factor RF3, C-terminal domain KW556_19730 PF00990 Diguanylate cyclase, GGDEF domain KW556_19735 PF05762 VWA domain containing CoxE-like protein KW556_19740 PF12592 Protein of unknown function (DUF3763) KW556_19740 PF17868 AAA lid domain KW556_19740 PF07728 AAA domain (dynein-related subfamily) KW556_19750 PF00583 Acetyltransferase (GNAT) family KW556_19750 PF13673 Acetyltransferase (GNAT) domain KW556_19760 PF00501 AMP-binding enzyme KW556_19770 PF04262 Glutamate-cysteine ligase KW556_19775 PF05193 Peptidase M16 inactive domain KW556_19775 PF00675 Insulinase (Peptidase family M16) KW556_19780 PF09335 SNARE associated Golgi protein KW556_19785 PF08240 Alcohol dehydrogenase GroES-like domain KW556_19785 PF00107 Zinc-binding dehydrogenase KW556_19810 PF00970 Oxidoreductase FAD-binding domain KW556_19810 PF00175 Oxidoreductase NAD-binding domain KW556_19815 PF03948 Ribosomal protein L9, C-terminal domain KW556_19815 PF01281 Ribosomal protein L9, N-terminal domain KW556_19820 PF01084 Ribosomal protein S18 KW556_19825 PF01250 Ribosomal protein S6 KW556_19830 PF01566 Natural resistance-associated macrophage protein KW556_19835 PF02272 DHHA1 domain KW556_19835 PF01411 tRNA synthetases class II (A) KW556_19835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW556_19845 PF00216 Bacterial DNA-binding protein KW556_19850 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ KW556_19855 PF07238 PilZ domain KW556_19860 PF18073 Rubredoxin metal binding domain KW556_19875 PF18429 Domain of unknown function (DUF5609) KW556_19885 PF01048 Phosphorylase superfamily KW556_19890 PF01676 Metalloenzyme superfamily KW556_19895 PF02885 Glycosyl transferase family, helical bundle domain KW556_19895 PF00591 Glycosyl transferase family, a/b domain KW556_19895 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KW556_19900 PF01791 DeoC/LacD family aldolase KW556_19910 PF07670 Nucleoside recognition KW556_19910 PF07662 Na+ dependent nucleoside transporter C-terminus KW556_19910 PF01773 Na+ dependent nucleoside transporter N-terminus KW556_19915 PF01026 TatD related DNase KW556_19920 PF07963 Prokaryotic N-terminal methylation motif KW556_19925 PF02664 S-Ribosylhomocysteinase (LuxS) KW556_19935 PF00543 Nitrogen regulatory protein P-II KW556_19940 PF02540 NAD synthase KW556_19940 PF00795 Carbon-nitrogen hydrolase KW556_19955 PF05567 Neisseria PilC beta-propeller domain KW556_19975 PF07963 Prokaryotic N-terminal methylation motif KW556_19975 PF16732 Type IV minor pilin ComP, DNA uptake sequence receptor KW556_19980 PF02401 LytB protein KW556_19985 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KW556_19990 PF01252 Signal peptidase (SPase) II KW556_19995 PF08264 Anticodon-binding domain of tRNA KW556_19995 PF00133 tRNA synthetases class I (I, L, M and V) KW556_19995 PF06827 Zinc finger found in FPG and IleRS KW556_20000 PF06574 FAD synthetase KW556_20000 PF01687 Riboflavin kinase KW556_20005 PF03023 Lipid II flippase MurJ KW556_20010 PF01649 Ribosomal protein S20 KW556_20015 PF01022 Bacterial regulatory protein, arsR family KW556_20020 PF03466 LysR substrate binding domain KW556_20020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_20030 PF06965 Na+/H+ antiporter 1 KW556_20035 PF00303 Thymidylate synthase KW556_20040 PF01790 Prolipoprotein diacylglyceryl transferase KW556_20045 PF01590 GAF domain KW556_20045 PF05524 PEP-utilising enzyme, N-terminal KW556_20045 PF00391 PEP-utilising enzyme, mobile domain KW556_20045 PF02896 PEP-utilising enzyme, TIM barrel domain KW556_20050 PF00293 NUDIX domain KW556_20055 PF02976 DNA mismatch repair enzyme MutH KW556_20065 PF01245 Ribosomal protein L19 KW556_20070 PF01746 tRNA (Guanine-1)-methyltransferase KW556_20075 PF05239 PRC-barrel domain KW556_20075 PF01782 RimM N-terminal domain KW556_20080 PF00886 Ribosomal protein S16 KW556_20085 PF02978 Signal peptide binding domain KW556_20085 PF02881 SRP54-type protein, helical bundle domain KW556_20085 PF00448 SRP54-type protein, GTPase domain KW556_20090 PF01578 Cytochrome C assembly protein KW556_20095 PF00571 CBS domain KW556_20095 PF03471 Transporter associated domain KW556_20095 PF01595 Cyclin M transmembrane N-terminal domain KW556_20100 PF02082 Transcriptional regulator KW556_20105 PF00175 Oxidoreductase NAD-binding domain KW556_20105 PF00042 Globin KW556_20105 PF00970 Oxidoreductase FAD-binding domain KW556_20110 PF08238 Sel1 repeat KW556_20115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KW556_20115 PF00056 lactate/malate dehydrogenase, NAD binding domain KW556_20120 PF00528 Binding-protein-dependent transport system inner membrane component KW556_20125 PF00528 Binding-protein-dependent transport system inner membrane component KW556_20130 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_20135 PF00005 ABC transporter KW556_20140 PF01316 Arginine repressor, DNA binding domain KW556_20140 PF02863 Arginine repressor, C-terminal domain KW556_20145 PF04261 Dyp-type peroxidase family KW556_20150 PF00005 ABC transporter KW556_20150 PF08402 TOBE domain KW556_20160 PF13416 Bacterial extracellular solute-binding protein KW556_20165 PF00543 Nitrogen regulatory protein P-II KW556_20170 PF00472 RF-1 domain KW556_20175 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KW556_20175 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KW556_20185 PF03883 Peroxide stress protein YaaA KW556_20190 PF00437 Type II/IV secretion system protein KW556_20195 PF00437 Type II/IV secretion system protein KW556_20200 PF01168 Alanine racemase, N-terminal domain KW556_20205 PF03807 NADP oxidoreductase coenzyme F420-dependent KW556_20205 PF14748 Pyrroline-5-carboxylate reductase dimerisation KW556_20210 PF02325 YGGT family KW556_20215 PF02594 Uncharacterised ACR, YggU family COG1872 KW556_20225 PF07662 Na+ dependent nucleoside transporter C-terminus KW556_20225 PF07670 Nucleoside recognition KW556_20225 PF01773 Na+ dependent nucleoside transporter N-terminus KW556_20230 PF03466 LysR substrate binding domain KW556_20230 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_20235 PF00255 Glutathione peroxidase KW556_20245 PF02595 Glycerate kinase family KW556_20250 PF02447 GntP family permease KW556_20255 PF05651 Putative sugar diacid recognition KW556_20255 PF17853 GGDEF-like domain KW556_20255 PF13556 PucR C-terminal helix-turn-helix domain KW556_20260 PF06062 Uncharacterised protein family (UPF0231) KW556_20280 PF03372 Endonuclease/Exonuclease/phosphatase family KW556_20290 PF00270 DEAD/DEAH box helicase KW556_20290 PF00271 Helicase conserved C-terminal domain KW556_20300 PF08534 Redoxin KW556_20305 PF00403 Heavy-metal-associated domain KW556_20315 PF01553 Acyltransferase KW556_20335 PF00578 AhpC/TSA family KW556_20340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_20340 PF03466 LysR substrate binding domain KW556_20355 PF00226 DnaJ domain KW556_20355 PF01556 DnaJ C terminal domain KW556_20355 PF00684 DnaJ central domain KW556_20375 PF00854 POT family KW556_20380 PF07690 Major Facilitator Superfamily KW556_20385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_20385 PF03466 LysR substrate binding domain KW556_20420 PF05598 Transposase domain (DUF772) KW556_20420 PF01609 Transposase DDE domain KW556_20425 PF00521 DNA gyrase/topoisomerase IV, subunit A KW556_20425 PF03989 DNA gyrase C-terminal domain, beta-propeller KW556_20430 PF00986 DNA gyrase B subunit, carboxyl terminus KW556_20430 PF00204 DNA gyrase B KW556_20430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_20430 PF01751 Toprim domain KW556_20435 PF05728 Uncharacterised protein family (UPF0227) KW556_20440 PF00149 Calcineurin-like phosphoesterase KW556_20445 PF06853 Protein of unknown function (DUF1249) KW556_20450 PF00293 NUDIX domain KW556_20455 PF02321 Outer membrane efflux protein KW556_20460 PF00294 pfkB family carbohydrate kinase KW556_20460 PF01467 Cytidylyltransferase-like KW556_20465 PF03279 Bacterial lipid A biosynthesis acyltransferase KW556_20470 PF02378 Phosphotransferase system, EIIC KW556_20470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KW556_20470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_20475 PF01232 Mannitol dehydrogenase Rossmann domain KW556_20475 PF08125 Mannitol dehydrogenase C-terminal domain KW556_20480 PF05068 Mannitol repressor KW556_20500 PF01544 CorA-like Mg2+ transporter protein KW556_20505 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KW556_20510 PF04307 LexA-binding, inner membrane-associated putative hydrolase KW556_20515 PF07662 Na+ dependent nucleoside transporter C-terminus KW556_20515 PF07670 Nucleoside recognition KW556_20515 PF01773 Na+ dependent nucleoside transporter N-terminus KW556_20520 PF03880 DbpA RNA binding domain KW556_20520 PF00270 DEAD/DEAH box helicase KW556_20520 PF00271 Helicase conserved C-terminal domain KW556_20540 PF01040 UbiA prenyltransferase family KW556_20545 PF00425 chorismate binding enzyme KW556_20550 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_20550 PF16582 Middle domain of thiamine pyrophosphate KW556_20550 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW556_20555 PF12697 Alpha/beta hydrolase family KW556_20560 PF00378 Enoyl-CoA hydratase/isomerase KW556_20565 PF13378 Enolase C-terminal domain-like KW556_20570 PF00501 AMP-binding enzyme KW556_20575 PF08453 Peptidase family M9 N-terminal KW556_20575 PF01752 Collagenase KW556_20580 PF02698 DUF218 domain KW556_20585 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KW556_20585 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KW556_20595 PF00072 Response regulator receiver domain KW556_20595 PF01584 CheW-like domain KW556_20605 PF17176 tRNA-binding domain KW556_20605 PF05127 Helicase KW556_20605 PF13718 GNAT acetyltransferase 2 KW556_20605 PF08351 Domain of unknown function (DUF1726) KW556_20620 PF00210 Ferritin-like domain KW556_20625 PF02142 MGS-like domain KW556_20630 PF00465 Iron-containing alcohol dehydrogenase KW556_20640 PF03577 Peptidase family C69 KW556_20645 PF00106 short chain dehydrogenase KW556_20665 PF02903 Alpha amylase, N-terminal ig-like domain KW556_20665 PF16657 Maltogenic Amylase, C-terminal domain KW556_20665 PF00128 Alpha amylase, catalytic domain KW556_20685 PF00884 Sulfatase KW556_20690 PF01037 Lrp/AsnC ligand binding domain KW556_20700 PF04204 Homoserine O-succinyltransferase KW556_20705 PF01966 HD domain KW556_20705 PF00013 KH domain KW556_20705 PF12072 Domain of unknown function (DUF3552) KW556_20710 PF02464 Competence-damaged protein KW556_20710 PF00994 Probable molybdopterin binding domain KW556_20730 PF04363 Protein of unknown function (DUF496) KW556_20760 PF12137 RNA polymerase recycling family C-terminal KW556_20760 PF00271 Helicase conserved C-terminal domain KW556_20760 PF18337 RapA N-terminal Tudor like domain KW556_20760 PF18339 RapA N-terminal Tudor like domain 1 KW556_20760 PF00176 SNF2 family N-terminal domain KW556_20765 PF00849 RNA pseudouridylate synthase KW556_20775 PF12464 Maltose acetyltransferase KW556_20775 PF14602 Hexapeptide repeat of succinyl-transferase KW556_20780 PF11941 Domain of unknown function (DUF3459) KW556_20780 PF00128 Alpha amylase, catalytic domain KW556_20785 PF00367 phosphotransferase system, EIIB KW556_20785 PF02378 Phosphotransferase system, EIIC KW556_20790 PF00356 Bacterial regulatory proteins, lacI family KW556_20805 PF17763 Glutaminase/Asparaginase C-terminal domain KW556_20805 PF00710 Asparaginase, N-terminal KW556_20810 PF01595 Cyclin M transmembrane N-terminal domain KW556_20810 PF03471 Transporter associated domain KW556_20810 PF00571 CBS domain KW556_20815 PF09335 SNARE associated Golgi protein KW556_20820 PF00768 D-alanyl-D-alanine carboxypeptidase KW556_20855 PF02599 Global regulator protein family KW556_20860 PF13840 ACT domain KW556_20860 PF01842 ACT domain KW556_20860 PF00696 Amino acid kinase family KW556_20865 PF01411 tRNA synthetases class II (A) KW556_20865 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KW556_20865 PF02272 DHHA1 domain KW556_20870 PF02631 RecX family KW556_20875 PF00154 recA bacterial DNA recombination protein KW556_20880 PF02464 Competence-damaged protein KW556_20890 PF09588 YqaJ-like viral recombinase domain KW556_20935 PF04002 RadC-like JAB domain KW556_20985 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A KW556_21000 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) KW556_21000 PF11867 Domain of unknown function (DUF3387) KW556_21000 PF18766 SWI2/SNF2 ATPase KW556_21020 PF02384 N-6 DNA Methylase KW556_21020 PF12161 HsdM N-terminal domain KW556_21035 PF00717 Peptidase S24-like KW556_21045 PF03050 Transposase IS66 family KW556_21050 PF00672 HAMP domain KW556_21050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_21055 PF02796 Helix-turn-helix domain of resolvase KW556_21055 PF00239 Resolvase, N terminal domain KW556_21060 PF08447 PAS fold KW556_21060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_21070 PF05598 Transposase domain (DUF772) KW556_21070 PF01609 Transposase DDE domain KW556_21075 PF00990 Diguanylate cyclase, GGDEF domain KW556_21075 PF05230 MASE2 domain KW556_21130 PF13356 Arm DNA-binding domain KW556_21130 PF14659 Phage integrase, N-terminal SAM-like domain KW556_21130 PF00589 Phage integrase family KW556_21135 PF05190 MutS family domain IV KW556_21135 PF00488 MutS domain V KW556_21135 PF05188 MutS domain II KW556_21135 PF01624 MutS domain I KW556_21135 PF05192 MutS domain III KW556_21140 PF01734 Patatin-like phospholipase KW556_21150 PF04172 LrgB-like family KW556_21155 PF03788 LrgA family KW556_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_21160 PF03466 LysR substrate binding domain KW556_21170 PF04073 Aminoacyl-tRNA editing domain KW556_21200 PF04055 Radical SAM superfamily KW556_21200 PF06968 Biotin and Thiamin Synthesis associated domain KW556_21205 PF05690 Thiazole biosynthesis protein ThiG KW556_21215 PF00899 ThiF family KW556_21220 PF02581 Thiamine monophosphate synthase KW556_21225 PF13667 ThiC-associated domain KW556_21225 PF01964 Radical SAM ThiC family KW556_21230 PF01117 Aerolysin toxin KW556_21230 PF03440 Aerolysin/Pertussis toxin (APT) domain KW556_21245 PF00486 Transcriptional regulatory protein, C terminal KW556_21245 PF00072 Response regulator receiver domain KW556_21250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_21255 PF18030 RimK PreATP-grasp domain KW556_21255 PF08443 RimK-like ATP-grasp domain KW556_21260 PF02310 B12 binding domain KW556_21260 PF02607 B12 binding domain KW556_21260 PF02965 Vitamin B12 dependent methionine synthase, activation domain KW556_21260 PF00809 Pterin binding enzyme KW556_21260 PF02574 Homocysteine S-methyltransferase KW556_21265 PF00999 Sodium/hydrogen exchanger family KW556_21290 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) KW556_21300 PF07690 Major Facilitator Superfamily KW556_21305 PF01914 MarC family integral membrane protein KW556_21315 PF01523 Putative modulator of DNA gyrase KW556_21320 PF00795 Carbon-nitrogen hydrolase KW556_21330 PF13116 Protein of unknown function KW556_21330 PF13502 AsmA-like C-terminal region KW556_21335 PF10150 Ribonuclease E/G family KW556_21335 PF00575 S1 RNA binding domain KW556_21345 PF04093 rod shape-determining protein MreD KW556_21350 PF04085 rod shape-determining protein MreC KW556_21380 PF07963 Prokaryotic N-terminal methylation motif KW556_21380 PF00114 Pilin (bacterial filament) KW556_21385 PF07963 Prokaryotic N-terminal methylation motif KW556_21400 PF00482 Type II secretion system (T2SS), protein F KW556_21405 PF00437 Type II/IV secretion system protein KW556_21405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain KW556_21415 PF13401 AAA domain KW556_21415 PF09077 Mu B transposition protein, C terminal KW556_21420 PF00263 Bacterial type II and III secretion system protein KW556_21420 PF03958 Bacterial type II/III secretion system short domain KW556_21450 PF00563 EAL domain KW556_21450 PF17157 Gammaproteobacterial periplasmic sensor domain KW556_21450 PF00990 Diguanylate cyclase, GGDEF domain KW556_21455 PF12792 CSS motif domain associated with EAL KW556_21455 PF00563 EAL domain KW556_21460 PF01699 Sodium/calcium exchanger protein KW556_21465 PF00221 Aromatic amino acid lyase KW556_21470 PF01175 Urocanase Rossmann-like domain KW556_21470 PF17392 Urocanase C-terminal domain KW556_21470 PF17391 Urocanase N-terminal domain KW556_21475 PF00491 Arginase family KW556_21480 PF01979 Amidohydrolase family KW556_21485 PF07702 UTRA domain KW556_21485 PF00392 Bacterial regulatory proteins, gntR family KW556_21490 PF00484 Carbonic anhydrase KW556_21495 PF00140 Sigma-70 factor, region 1.2 KW556_21495 PF04542 Sigma-70 region 2 KW556_21495 PF04545 Sigma-70, region 4 KW556_21500 PF18075 FtsX extracellular domain KW556_21505 PF00005 ABC transporter KW556_21510 PF00448 SRP54-type protein, GTPase domain KW556_21510 PF02881 SRP54-type protein, helical bundle domain KW556_21535 PF00999 Sodium/hydrogen exchanger family KW556_21535 PF02254 TrkA-N domain KW556_21540 PF02525 Flavodoxin-like fold KW556_21545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_21545 PF03466 LysR substrate binding domain KW556_21550 PF00106 short chain dehydrogenase KW556_21565 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain KW556_21565 PF00326 Prolyl oligopeptidase family KW556_21580 PF13091 PLD-like domain KW556_21590 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_21590 PF01464 Transglycosylase SLT domain KW556_21600 PF02416 mttA/Hcf106 family KW556_21605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_21605 PF03466 LysR substrate binding domain KW556_21610 PF01914 MarC family integral membrane protein KW556_21615 PF10678 Protein of unknown function (DUF2492) KW556_21620 PF00375 Sodium:dicarboxylate symporter family KW556_21630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_21630 PF03466 LysR substrate binding domain KW556_21635 PF13533 Biotin-lipoyl like KW556_21640 PF07690 Major Facilitator Superfamily KW556_21645 PF07947 YhhN family KW556_21660 PF00440 Bacterial regulatory proteins, tetR family KW556_21700 PF00009 Elongation factor Tu GTP binding domain KW556_21700 PF03144 Elongation factor Tu domain 2 KW556_21700 PF03143 Elongation factor Tu C-terminal domain KW556_21705 PF00009 Elongation factor Tu GTP binding domain KW556_21705 PF03764 Elongation factor G, domain IV KW556_21705 PF14492 Elongation Factor G, domain II KW556_21705 PF03144 Elongation factor Tu domain 2 KW556_21705 PF00679 Elongation factor G C-terminus KW556_21710 PF00177 Ribosomal protein S7p/S5e KW556_21715 PF00164 Ribosomal protein S12/S23 KW556_21720 PF04077 DsrH like protein KW556_21725 PF02635 DsrE/DsrF-like family KW556_21730 PF02635 DsrE/DsrF-like family KW556_21735 PF01042 Endoribonuclease L-PSP KW556_21740 PF08348 YheO-like PAS domain KW556_21740 PF13309 HTH domain KW556_21745 PF04997 RNA polymerase Rpb1, domain 1 KW556_21745 PF00623 RNA polymerase Rpb1, domain 2 KW556_21745 PF04983 RNA polymerase Rpb1, domain 3 KW556_21745 PF04998 RNA polymerase Rpb1, domain 5 KW556_21745 PF05000 RNA polymerase Rpb1, domain 4 KW556_21750 PF00562 RNA polymerase Rpb2, domain 6 KW556_21750 PF04560 RNA polymerase Rpb2, domain 7 KW556_21750 PF10385 RNA polymerase beta subunit external 1 domain KW556_21750 PF04565 RNA polymerase Rpb2, domain 3 KW556_21750 PF04563 RNA polymerase beta subunit KW556_21750 PF04561 RNA polymerase Rpb2, domain 2 KW556_21755 PF00542 Ribosomal protein L7/L12 C-terminal domain KW556_21755 PF16320 Ribosomal protein L7/L12 dimerisation domain KW556_21760 PF00466 Ribosomal protein L10 KW556_21765 PF00687 Ribosomal protein L1p/L10e family KW556_21770 PF00298 Ribosomal protein L11, RNA binding domain KW556_21770 PF03946 Ribosomal protein L11, N-terminal domain KW556_21775 PF00467 KOW motif KW556_21775 PF02357 Transcription termination factor nusG KW556_21780 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KW556_21790 PF00009 Elongation factor Tu GTP binding domain KW556_21790 PF03144 Elongation factor Tu domain 2 KW556_21790 PF03143 Elongation factor Tu C-terminal domain KW556_21810 PF00485 Phosphoribulokinase / Uridine kinase family KW556_21815 PF03099 Biotin/lipoate A/B protein ligase family KW556_21815 PF08279 HTH domain KW556_21815 PF02237 Biotin protein ligase C terminal domain KW556_21820 PF01565 FAD binding domain KW556_21820 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KW556_21825 PF02254 TrkA-N domain KW556_21825 PF02080 TrkA-C domain KW556_21830 PF02386 Cation transport protein KW556_21835 PF01131 DNA topoisomerase KW556_21835 PF01751 Toprim domain KW556_21845 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_21845 PF00512 His Kinase A (phospho-acceptor) domain KW556_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_21850 PF03264 NapC/NirT cytochrome c family, N-terminal region KW556_21855 PF01568 Molydopterin dinucleotide binding domain KW556_21855 PF18364 Molybdopterin oxidoreductase N-terminal domain KW556_21855 PF00384 Molybdopterin oxidoreductase KW556_21865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_21870 PF00072 Response regulator receiver domain KW556_21870 PF00486 Transcriptional regulatory protein, C terminal KW556_21885 PF01794 Ferric reductase like transmembrane component KW556_21890 PF00174 Oxidoreductase molybdopterin binding domain KW556_21895 PF06496 Protein of unknown function (DUF1097) KW556_21900 PF00072 Response regulator receiver domain KW556_21900 PF00158 Sigma-54 interaction domain KW556_21910 PF00512 His Kinase A (phospho-acceptor) domain KW556_21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_21930 PF00571 CBS domain KW556_21930 PF00478 IMP dehydrogenase / GMP reductase domain KW556_21935 PF10063 Uncharacterized integral membrane protein (DUF2301) KW556_21945 PF01037 Lrp/AsnC ligand binding domain KW556_21950 PF03590 Aspartate-ammonia ligase KW556_21955 PF00004 ATPase family associated with various cellular activities (AAA) KW556_21955 PF07724 AAA domain (Cdc48 subfamily) KW556_21955 PF17871 AAA lid domain KW556_21955 PF02861 Clp amino terminal domain, pathogenicity island component KW556_21955 PF10431 C-terminal, D2-small domain, of ClpB protein KW556_21960 PF02578 Multi-copper polyphenol oxidoreductase laccase KW556_21965 PF01479 S4 domain KW556_21965 PF00849 RNA pseudouridylate synthase KW556_21970 PF13525 Outer membrane lipoprotein KW556_21975 PF01609 Transposase DDE domain KW556_21975 PF13006 Insertion element 4 transposase N-terminal KW556_21980 PF07992 Pyridine nucleotide-disulphide oxidoreductase KW556_21980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KW556_21985 PF00375 Sodium:dicarboxylate symporter family KW556_21990 PF03313 Serine dehydratase alpha chain KW556_21995 PF13309 HTH domain KW556_21995 PF08348 YheO-like PAS domain KW556_22005 PF02233 NAD(P) transhydrogenase beta subunit KW556_22010 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KW556_22010 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KW556_22010 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch KW556_22015 PF00465 Iron-containing alcohol dehydrogenase KW556_22020 PF12833 Helix-turn-helix domain KW556_22020 PF06719 AraC-type transcriptional regulator N-terminus KW556_22025 PF08212 Lipocalin-like domain KW556_22030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_22030 PF02743 Cache domain KW556_22030 PF00672 HAMP domain KW556_22040 PF03466 LysR substrate binding domain KW556_22040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_22060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW556_22060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW556_22065 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain KW556_22065 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain KW556_22070 PF01316 Arginine repressor, DNA binding domain KW556_22070 PF02863 Arginine repressor, C-terminal domain KW556_22075 PF03606 C4-dicarboxylate anaerobic carrier KW556_22080 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KW556_22080 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KW556_22085 PF00696 Amino acid kinase family KW556_22125 PF06969 HemN C-terminal domain KW556_22125 PF04055 Radical SAM superfamily KW556_22130 PF10675 Protein of unknown function (DUF2489) KW556_22135 PF04220 Der GTPase activator (YihI) KW556_22140 PF00034 Cytochrome c KW556_22145 PF01926 50S ribosome-binding GTPase KW556_22165 PF01488 Shikimate / quinate 5-dehydrogenase KW556_22165 PF08501 Shikimate dehydrogenase substrate binding domain KW556_22165 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KW556_22170 PF01218 Coproporphyrinogen III oxidase KW556_22175 PF01300 Telomere recombination KW556_22180 PF00731 AIR carboxylase KW556_22185 PF01396 Topoisomerase DNA binding C4 zinc finger KW556_22190 PF04361 Protein of unknown function (DUF494) KW556_22195 PF17782 DprA winged helix domain KW556_22195 PF02481 DNA recombination-mediator protein A KW556_22200 PF01476 LysM domain KW556_22205 PF01327 Polypeptide deformylase KW556_22210 PF02911 Formyl transferase, C-terminal domain KW556_22210 PF00551 Formyl transferase KW556_22215 PF01189 16S rRNA methyltransferase RsmB/F KW556_22215 PF01029 NusB family KW556_22220 PF02080 TrkA-C domain KW556_22220 PF02254 TrkA-N domain KW556_22225 PF02386 Cation transport protein KW556_22230 PF00679 Elongation factor G C-terminus KW556_22230 PF00009 Elongation factor Tu GTP binding domain KW556_22230 PF03144 Elongation factor Tu domain 2 KW556_22235 PF00120 Glutamine synthetase, catalytic domain KW556_22235 PF03951 Glutamine synthetase, beta-Grasp domain KW556_22245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_22245 PF00512 His Kinase A (phospho-acceptor) domain KW556_22245 PF00989 PAS fold KW556_22250 PF02954 Bacterial regulatory protein, Fis family KW556_22250 PF00072 Response regulator receiver domain KW556_22250 PF00158 Sigma-54 interaction domain KW556_22255 PF00962 Adenosine/AMP deaminase KW556_22260 PF02646 RmuC family KW556_22275 PF02082 Transcriptional regulator KW556_22280 PF00294 pfkB family carbohydrate kinase KW556_22285 PF03466 LysR substrate binding domain KW556_22285 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_22290 PF00117 Glutamine amidotransferase class-I KW556_22290 PF00958 GMP synthase C terminal domain KW556_22290 PF02540 NAD synthase KW556_22295 PF00171 Aldehyde dehydrogenase family KW556_22300 PF00202 Aminotransferase class-III KW556_22305 PF07883 Cupin domain KW556_22305 PF01381 Helix-turn-helix KW556_22310 PF00171 Aldehyde dehydrogenase family KW556_22320 PF00892 EamA-like transporter family KW556_22325 PF17200 Single Cache domain 2 KW556_22325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_22325 PF00672 HAMP domain KW556_22330 PF04143 Sulphur transport KW556_22335 PF01389 OmpA-like transmembrane domain KW556_22335 PF00691 OmpA family KW556_22340 PF00585 C-terminal regulatory domain of Threonine dehydratase KW556_22340 PF00291 Pyridoxal-phosphate dependent enzyme KW556_22345 PF00920 Dehydratase family KW556_22350 PF01063 Amino-transferase class IV KW556_22360 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KW556_22360 PF00205 Thiamine pyrophosphate enzyme, central domain KW556_22360 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KW556_22365 PF01078 Magnesium chelatase, subunit ChlI KW556_22365 PF13335 Magnesium chelatase, subunit ChlI C-terminal KW556_22370 PF01553 Acyltransferase KW556_22375 PF01553 Acyltransferase KW556_22380 PF04463 Protein of unknown function (DUF523) KW556_22390 PF00857 Isochorismatase family KW556_22395 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KW556_22395 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KW556_22400 PF01323 DSBA-like thioredoxin domain KW556_22405 PF01636 Phosphotransferase enzyme family KW556_22410 PF13746 4Fe-4S dicluster domain KW556_22410 PF12801 4Fe-4S binding domain KW556_22410 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase KW556_22415 PF06288 Protein of unknown function (DUF1040) KW556_22420 PF00563 EAL domain KW556_22420 PF00990 Diguanylate cyclase, GGDEF domain KW556_22420 PF00360 Phytochrome region KW556_22420 PF01590 GAF domain KW556_22425 PF13411 MerR HTH family regulatory protein KW556_22430 PF00403 Heavy-metal-associated domain KW556_22435 PF00156 Phosphoribosyl transferase domain KW556_22440 PF01138 3' exoribonuclease family, domain 1 KW556_22440 PF03725 3' exoribonuclease family, domain 2 KW556_22445 PF08340 Domain of unknown function (DUF1732) KW556_22445 PF03755 YicC-like family, N-terminal region KW556_22450 PF03466 LysR substrate binding domain KW556_22450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_22455 PF00107 Zinc-binding dehydrogenase KW556_22455 PF08240 Alcohol dehydrogenase GroES-like domain KW556_22460 PF00756 Putative esterase KW556_22470 PF12867 DinB superfamily KW556_22470 PF03781 Sulfatase-modifying factor enzyme 1 KW556_22475 PF13593 SBF-like CPA transporter family (DUF4137) KW556_22480 PF13520 Amino acid permease KW556_22485 PF01588 Putative tRNA binding domain KW556_22490 PF13520 Amino acid permease KW556_22495 PF04074 YhcH/YjgK/YiaL KW556_22500 PF02929 Beta galactosidase small chain KW556_22500 PF00703 Glycosyl hydrolases family 2 KW556_22500 PF02836 Glycosyl hydrolases family 2, TIM barrel domain KW556_22500 PF02837 Glycosyl hydrolases family 2, sugar binding domain KW556_22500 PF16353 Domain of unknown function(DUF4981) KW556_22505 PF00356 Bacterial regulatory proteins, lacI family KW556_22540 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_22545 PF01367 5'-3' exonuclease, C-terminal SAM fold KW556_22545 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KW556_22545 PF00476 DNA polymerase family A KW556_22545 PF01612 3'-5' exonuclease KW556_22555 PF06005 Cell division protein ZapB KW556_22565 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_22565 PF06426 Serine acetyltransferase, N-terminal KW556_22570 PF01545 Cation efflux family KW556_22570 PF16916 Dimerisation domain of Zinc Transporter KW556_22575 PF00072 Response regulator receiver domain KW556_22575 PF00486 Transcriptional regulatory protein, C terminal KW556_22580 PF00512 His Kinase A (phospho-acceptor) domain KW556_22580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_22580 PF16527 Two-component sensor protein CpxA, periplasmic domain KW556_22580 PF00672 HAMP domain KW556_22585 PF00588 SpoU rRNA Methylase family KW556_22590 PF01554 MatE KW556_22595 PF02630 SCO1/SenC KW556_22605 PF01726 LexA DNA binding domain KW556_22605 PF00717 Peptidase S24-like KW556_22610 PF01553 Acyltransferase KW556_22615 PF01040 UbiA prenyltransferase family KW556_22620 PF04345 Chorismate lyase KW556_22640 PF00107 Zinc-binding dehydrogenase KW556_22640 PF08240 Alcohol dehydrogenase GroES-like domain KW556_22645 PF00356 Bacterial regulatory proteins, lacI family KW556_22645 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KW556_22650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KW556_22660 PF03611 PTS system sugar-specific permease component KW556_22665 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) KW556_22670 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW556_22675 PF00535 Glycosyl transferase family 2 KW556_22680 PF01075 Glycosyltransferase family 9 (heptosyltransferase) KW556_22685 PF01467 Cytidylyltransferase-like KW556_22690 PF04393 Protein of unknown function (DUF535) KW556_22695 PF06827 Zinc finger found in FPG and IleRS KW556_22695 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KW556_22695 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KW556_22705 PF00471 Ribosomal protein L33 KW556_22710 PF00830 Ribosomal L28 family KW556_22715 PF04002 RadC-like JAB domain KW556_22720 PF04127 DNA / pantothenate metabolism flavoprotein KW556_22720 PF02441 Flavoprotein KW556_22725 PF00692 dUTPase KW556_22730 PF00440 Bacterial regulatory proteins, tetR family KW556_22735 PF05552 Conserved TM helix KW556_22735 PF00924 Mechanosensitive ion channel KW556_22740 PF00342 Phosphoglucose isomerase KW556_22745 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KW556_22745 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KW556_22750 PF03466 LysR substrate binding domain KW556_22750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KW556_22765 PF13380 CoA binding domain KW556_22765 PF00583 Acetyltransferase (GNAT) family KW556_22765 PF13607 Succinyl-CoA ligase like flavodoxin domain KW556_22795 PF12724 Flavodoxin domain KW556_22800 PF02386 Cation transport protein KW556_22805 PF09186 Domain of unknown function (DUF1949) KW556_22805 PF01205 Uncharacterized protein family UPF0029 KW556_22810 PF00557 Metallopeptidase family M24 KW556_22815 PF00501 AMP-binding enzyme KW556_22815 PF13193 AMP-binding enzyme C-terminal domain KW556_22820 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KW556_22820 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KW556_22820 PF00378 Enoyl-CoA hydratase/isomerase KW556_22825 PF02803 Thiolase, C-terminal domain KW556_22825 PF00108 Thiolase, N-terminal domain KW556_22830 PF00072 Response regulator receiver domain KW556_22830 PF00486 Transcriptional regulatory protein, C terminal KW556_22835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_22835 PF00672 HAMP domain KW556_22835 PF00512 His Kinase A (phospho-acceptor) domain KW556_22840 PF01547 Bacterial extracellular solute-binding protein KW556_22850 PF01206 Sulfurtransferase TusA KW556_22855 PF01042 Endoribonuclease L-PSP KW556_22860 PF13488 Glycine zipper KW556_22860 PF00691 OmpA family KW556_22865 PF03352 Methyladenine glycosylase KW556_22870 PF02091 Glycyl-tRNA synthetase alpha subunit KW556_22875 PF05746 DALR anticodon binding domain KW556_22875 PF02092 Glycyl-tRNA synthetase beta subunit KW556_22880 PF13614 AAA domain KW556_22905 PF01609 Transposase DDE domain KW556_22910 PF00990 Diguanylate cyclase, GGDEF domain KW556_22910 PF00563 EAL domain KW556_22910 PF03707 Bacterial signalling protein N terminal repeat KW556_22915 PF03545 Yersinia virulence determinant (YopE) KW556_22915 PF03496 ADP-ribosyltransferase exoenzyme KW556_22920 PF05932 Tir chaperone protein (CesT) family KW556_22930 PF02743 Cache domain KW556_22930 PF00672 HAMP domain KW556_22930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_22935 PF00356 Bacterial regulatory proteins, lacI family KW556_22940 PF13458 Periplasmic binding protein KW556_22945 PF02653 Branched-chain amino acid transport system / permease component KW556_22950 PF11862 Domain of unknown function (DUF3382) KW556_22950 PF02653 Branched-chain amino acid transport system / permease component KW556_22955 PF00005 ABC transporter KW556_22955 PF12399 Branched-chain amino acid ATP-binding cassette transporter KW556_22960 PF00005 ABC transporter KW556_22965 PF00581 Rhodanese-like domain KW556_22970 PF01694 Rhomboid family KW556_22970 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease KW556_22975 PF04380 Membrane fusogenic activity KW556_22980 PF00990 Diguanylate cyclase, GGDEF domain KW556_22980 PF08447 PAS fold KW556_22980 PF00563 EAL domain KW556_22980 PF08448 PAS fold KW556_22985 PF00175 Oxidoreductase NAD-binding domain KW556_22990 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KW556_23000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW556_23000 PF07498 Rho termination factor, N-terminal domain KW556_23000 PF07497 Rho termination factor, RNA-binding domain KW556_23005 PF00085 Thioredoxin KW556_23010 PF00270 DEAD/DEAH box helicase KW556_23010 PF00271 Helicase conserved C-terminal domain KW556_23015 PF02541 Ppx/GppA phosphatase family KW556_23025 PF04445 Putative SAM-dependent methyltransferase KW556_23030 PF03707 Bacterial signalling protein N terminal repeat KW556_23030 PF00990 Diguanylate cyclase, GGDEF domain KW556_23030 PF00563 EAL domain KW556_23035 PF01432 Peptidase family M3 KW556_23040 PF00704 Glycosyl hydrolases family 18 KW556_23045 PF00490 Delta-aminolevulinic acid dehydratase KW556_23050 PF01026 TatD related DNase KW556_23055 PF00902 Sec-independent protein translocase protein (TatC) KW556_23060 PF02416 mttA/Hcf106 family KW556_23065 PF02416 mttA/Hcf106 family KW556_23070 PF03109 ABC1 family KW556_23075 PF02036 SCP-2 sterol transfer family KW556_23080 PF01209 ubiE/COQ5 methyltransferase family KW556_23085 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KW556_23090 PF07969 Amidohydrolase family KW556_23095 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KW556_23135 PF03544 Gram-negative bacterial TonB protein C-terminal KW556_23140 PF02472 Biopolymer transport protein ExbD/TolR KW556_23145 PF01618 MotA/TolQ/ExbB proton channel family KW556_23150 PF01618 MotA/TolQ/ExbB proton channel family KW556_23160 PF03472 Autoinducer binding domain KW556_23160 PF00196 Bacterial regulatory proteins, luxR family KW556_23170 PF00571 CBS domain KW556_23170 PF01380 SIS domain KW556_23175 PF00455 DeoR C terminal sensor domain KW556_23175 PF08220 DeoR-like helix-turn-helix domain KW556_23185 PF00106 short chain dehydrogenase KW556_23190 PF03829 PTS system glucitol/sorbitol-specific IIA component KW556_23195 PF07663 Sorbitol phosphotransferase enzyme II C-terminus KW556_23195 PF03612 Sorbitol phosphotransferase enzyme II N-terminus KW556_23200 PF03608 PTS system enzyme II sorbitol-specific factor KW556_23215 PF18623 TnsE C-terminal domain KW556_23225 PF06527 TniQ KW556_23225 PF15978 Tn7-like transposition protein D KW556_23230 PF11426 Tn7 transposition regulator TnsC KW556_23230 PF13401 AAA domain KW556_23235 PF00665 Integrase core domain KW556_23240 PF08722 TnsA endonuclease N terminal KW556_23240 PF08721 TnsA endonuclease C terminal KW556_23245 PF01380 SIS domain KW556_23250 PF00455 DeoR C terminal sensor domain KW556_23250 PF08220 DeoR-like helix-turn-helix domain KW556_23255 PF00072 Response regulator receiver domain KW556_23255 PF00486 Transcriptional regulatory protein, C terminal KW556_23260 PF00672 HAMP domain KW556_23260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KW556_23260 PF00512 His Kinase A (phospho-acceptor) domain KW556_23265 PF00905 Penicillin binding protein transpeptidase domain KW556_23275 PF06123 Inner membrane protein CreD KW556_23280 PF14602 Hexapeptide repeat of succinyl-transferase KW556_23280 PF00132 Bacterial transferase hexapeptide (six repeats) KW556_23280 PF12804 MobA-like NTP transferase domain KW556_23285 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KW556_23285 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KW556_23290 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW556_23290 PF02874 ATP synthase alpha/beta family, beta-barrel domain KW556_23295 PF00231 ATP synthase KW556_23300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KW556_23300 PF00306 ATP synthase alpha/beta chain, C terminal domain KW556_23300 PF02874 ATP synthase alpha/beta family, beta-barrel domain KW556_23305 PF00213 ATP synthase delta (OSCP) subunit KW556_23310 PF00430 ATP synthase B/B' CF(0) KW556_23315 PF00137 ATP synthase subunit C KW556_23320 PF00119 ATP synthase A chain KW556_23330 PF02195 ParB-like nuclease domain KW556_23330 PF17762 HTH domain found in ParB protein KW556_23335 PF13614 AAA domain KW556_23340 PF02527 rRNA small subunit methyltransferase G KW556_23345 PF01134 Glucose inhibited division protein A KW556_23345 PF13932 GidA associated domain KW556_23350 PF00258 Flavodoxin KW556_23355 PF07715 TonB-dependent Receptor Plug Domain KW556_23355 PF00593 TonB dependent receptor KW556_23360 PF00005 ABC transporter KW556_23365 PF00005 ABC transporter KW556_23370 PF13700 Domain of unknown function (DUF4158) KW556_23370 PF01526 Tn3 transposase DDE domain KW556_23375 PF02796 Helix-turn-helix domain of resolvase KW556_23375 PF00239 Resolvase, N terminal domain KW556_23380 PF01497 Periplasmic binding protein KW556_23385 PF01032 FecCD transport family KW556_23390 PF07804 HipA-like C-terminal domain KW556_23390 PF13657 HipA N-terminal domain KW556_23410 PF02796 Helix-turn-helix domain of resolvase KW556_23410 PF00239 Resolvase, N terminal domain KW556_23415 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ KW556_23420 PF03707 Bacterial signalling protein N terminal repeat KW556_23420 PF00990 Diguanylate cyclase, GGDEF domain KW556_23420 PF00563 EAL domain KW556_23425 PF13407 Periplasmic binding protein domain KW556_23455 PF00239 Resolvase, N terminal domain KW556_23455 PF02796 Helix-turn-helix domain of resolvase KW556_23495 PF02899 Phage integrase, N-terminal SAM-like domain KW556_23495 PF00589 Phage integrase family KW556_23500 PF10396 GTP-binding protein TrmE N-terminus KW556_23500 PF01926 50S ribosome-binding GTPase KW556_23500 PF12631 MnmE helical domain KW556_23505 PF02096 60Kd inner membrane protein KW556_23505 PF14849 YidC periplasmic domain KW556_23510 PF01809 Putative membrane protein insertion efficiency factor KW556_23515 PF00825 Ribonuclease P KW556_23520 PF00468 Ribosomal protein L34 KW556_23530 PF00528 Binding-protein-dependent transport system inner membrane component KW556_23535 PF00497 Bacterial extracellular solute-binding proteins, family 3 KW556_23550 PF00239 Resolvase, N terminal domain KW556_23550 PF02796 Helix-turn-helix domain of resolvase KW556_23555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KW556_23555 PF00672 HAMP domain KW556_23580 PF05016 ParE toxin of type II toxin-antitoxin system, parDE KW556_23585 PF04221 RelB antitoxin KW556_23590 PF13614 AAA domain KW556_23625 PF01526 Tn3 transposase DDE domain KW556_23625 PF13700 Domain of unknown function (DUF4158) KW556_23630 PF00239 Resolvase, N terminal domain KW556_23630 PF02796 Helix-turn-helix domain of resolvase KW556_23650 PF18327 Proline utilization A proline dehydrogenase N-terminal domain KW556_23650 PF00171 Aldehyde dehydrogenase family KW556_23650 PF01619 Proline dehydrogenase KW556_23650 PF14850 DNA-binding domain of Proline dehydrogenase KW556_23675 PF00239 Resolvase, N terminal domain KW556_23675 PF02796 Helix-turn-helix domain of resolvase KW556_23690 PF01526 Tn3 transposase DDE domain KW556_23690 PF13700 Domain of unknown function (DUF4158) KW556_23700 PF00403 Heavy-metal-associated domain KW556_23805 PF00376 MerR family regulatory protein KW556_23805 PF09278 MerR, DNA binding KW556_23825 PF00929 Exonuclease KW556_23840 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KW556_23855 PF03432 Relaxase/Mobilisation nuclease domain KW556_23920 PF00239 Resolvase, N terminal domain KW556_23920 PF02796 Helix-turn-helix domain of resolvase KW556_23930 PF01609 Transposase DDE domain KW556_23940 PF01609 Transposase DDE domain KW556_23955 PF01641 SelR domain KW556_23960 PF01625 Peptide methionine sulfoxide reductase KW556_23965 PF00043 Glutathione S-transferase, C-terminal domain KW556_23965 PF02798 Glutathione S-transferase, N-terminal domain KW556_23990 PF13614 AAA domain KW556_23990 PF00376 MerR family regulatory protein