locus-tag class description FGM04_00005 PF00465 Iron-containing alcohol dehydrogenase FGM04_00005 PF00171 Aldehyde dehydrogenase family FGM04_00010 PF01914 MarC family integral membrane protein FGM04_00015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_00020 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00025 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_00025 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00030 PF00005 ABC transporter FGM04_00030 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_00035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_00035 PF00005 ABC transporter FGM04_00040 PF03741 Integral membrane protein TerC family FGM04_00045 PF01168 Alanine racemase, N-terminal domain FGM04_00045 PF00842 Alanine racemase, C-terminal domain FGM04_00055 PF00437 Type II/IV secretion system protein FGM04_00070 PF01032 FecCD transport family FGM04_00075 PF00005 ABC transporter FGM04_00080 PF00583 Acetyltransferase (GNAT) family FGM04_00085 PF00793 DAHP synthetase I family FGM04_00090 PF01219 Prokaryotic diacylglycerol kinase FGM04_00095 PF01842 ACT domain FGM04_00095 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FGM04_00095 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_00100 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) FGM04_00105 PF01812 5-formyltetrahydrofolate cyclo-ligase family FGM04_00120 PF01113 Dihydrodipicolinate reductase, N-terminus FGM04_00120 PF05173 Dihydrodipicolinate reductase, C-terminus FGM04_00125 PF00117 Glutamine amidotransferase class-I FGM04_00125 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain FGM04_00130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain FGM04_00130 PF02142 MGS-like domain FGM04_00130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FGM04_00135 PF07759 Protein of unknown function (DUF1615) FGM04_00170 PF00691 OmpA family FGM04_00170 PF18393 MotY N-terminal domain FGM04_00180 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FGM04_00185 PF10576 Iron-sulfur binding domain of endonuclease III FGM04_00185 PF00633 Helix-hairpin-helix motif FGM04_00185 PF00730 HhH-GPD superfamily base excision DNA repair protein FGM04_00190 PF02508 Rnf-Nqr subunit, membrane protein FGM04_00195 PF04205 FMN-binding domain FGM04_00200 PF03116 NQR2, RnfD, RnfE family FGM04_00205 PF10531 SLBB domain FGM04_00205 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FGM04_00205 PF13375 RnfC Barrel sandwich hybrid domain FGM04_00205 PF12838 4Fe-4S dicluster domain FGM04_00210 PF04060 Putative Fe-S cluster FGM04_00215 PF02508 Rnf-Nqr subunit, membrane protein FGM04_00220 PF04851 Type III restriction enzyme, res subunit FGM04_00220 PF00271 Helicase conserved C-terminal domain FGM04_00230 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FGM04_00240 PF03466 LysR substrate binding domain FGM04_00240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_00250 PF00672 HAMP domain FGM04_00250 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_00250 PF02743 Cache domain FGM04_00255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FGM04_00255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FGM04_00260 PF00230 Major intrinsic protein FGM04_00265 PF07690 Major Facilitator Superfamily FGM04_00270 PF08220 DeoR-like helix-turn-helix domain FGM04_00270 PF00455 DeoR C terminal sensor domain FGM04_00275 PF16901 C-terminal domain of alpha-glycerophosphate oxidase FGM04_00275 PF01266 FAD dependent oxidoreductase FGM04_00280 PF03009 Glycerophosphoryl diester phosphodiesterase family FGM04_00285 PF03974 Ecotin FGM04_00290 PF04219 Protein of unknown function, DUF FGM04_00295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_00295 PF03466 LysR substrate binding domain FGM04_00305 PF00155 Aminotransferase class I and II FGM04_00320 PF03772 Competence protein FGM04_00320 PF00753 Metallo-beta-lactamase superfamily FGM04_00325 PF00664 ABC transporter transmembrane region FGM04_00325 PF00005 ABC transporter FGM04_00330 PF02606 Tetraacyldisaccharide-1-P 4'-kinase FGM04_00335 PF03966 Trm112p-like protein FGM04_00340 PF02348 Cytidylyltransferase FGM04_00345 PF00196 Bacterial regulatory proteins, luxR family FGM04_00345 PF00072 Response regulator receiver domain FGM04_00350 PF01541 GIY-YIG catalytic domain FGM04_00350 PF02151 UvrB/uvrC motif FGM04_00350 PF08459 UvrC Helix-hairpin-helix N-terminal FGM04_00355 PF01066 CDP-alcohol phosphatidyltransferase FGM04_00375 PF13356 Arm DNA-binding domain FGM04_00375 PF00589 Phage integrase family FGM04_00405 PF00893 Small Multidrug Resistance protein FGM04_00410 PF00893 Small Multidrug Resistance protein FGM04_00420 PF06130 Phosphate propanoyltransferase FGM04_00425 PF00936 BMC domain FGM04_00430 PF13187 4Fe-4S dicluster domain FGM04_00430 PF04055 Radical SAM superfamily FGM04_00435 PF01228 Glycine radical FGM04_00435 PF02901 Pyruvate formate lyase-like FGM04_00440 PF00171 Aldehyde dehydrogenase family FGM04_00440 PF00465 Iron-containing alcohol dehydrogenase FGM04_00450 PF00465 Iron-containing alcohol dehydrogenase FGM04_00450 PF00171 Aldehyde dehydrogenase family FGM04_00455 PF00936 BMC domain FGM04_00460 PF00936 BMC domain FGM04_00465 PF00936 BMC domain FGM04_00485 PF08220 DeoR-like helix-turn-helix domain FGM04_00485 PF00455 DeoR C terminal sensor domain FGM04_00490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FGM04_00490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FGM04_00500 PF05598 Transposase domain (DUF772) FGM04_00500 PF01609 Transposase DDE domain FGM04_00510 PF07882 L-fucose isomerase, second N-terminal domain FGM04_00510 PF02952 L-fucose isomerase, C-terminal domain FGM04_00510 PF07881 L-fucose isomerase, first N-terminal domain FGM04_00515 PF00370 FGGY family of carbohydrate kinases, N-terminal domain FGM04_00515 PF02782 FGGY family of carbohydrate kinases, C-terminal domain FGM04_00520 PF00596 Class II Aldolase and Adducin N-terminal domain FGM04_00525 PF05025 RbsD / FucU transport protein family FGM04_00530 PF00465 Iron-containing alcohol dehydrogenase FGM04_00550 PF13683 Integrase core domain FGM04_00550 PF13276 HTH-like domain FGM04_00580 PF00149 Calcineurin-like phosphoesterase FGM04_00590 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FGM04_00595 PF01406 tRNA synthetases class I (C) catalytic domain FGM04_00595 PF09190 DALR domain FGM04_00600 PF13361 UvrD-like helicase C-terminal domain FGM04_00600 PF00580 UvrD/REP helicase N-terminal domain FGM04_00605 PF05598 Transposase domain (DUF772) FGM04_00605 PF01609 Transposase DDE domain FGM04_00640 PF01169 Uncharacterized protein family UPF0016 FGM04_00645 PF01253 Translation initiation factor SUI1 FGM04_00655 PF02421 Ferrous iron transport protein B FGM04_00655 PF07670 Nucleoside recognition FGM04_00655 PF07664 Ferrous iron transport protein B C terminus FGM04_00670 PF00270 DEAD/DEAH box helicase FGM04_00670 PF00271 Helicase conserved C-terminal domain FGM04_00685 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FGM04_00685 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_00690 PF00310 Glutamine amidotransferases class-II FGM04_00690 PF01493 GXGXG motif FGM04_00690 PF01645 Conserved region in glutamate synthase FGM04_00690 PF04898 Glutamate synthase central domain FGM04_00695 PF16199 Radical_SAM C-terminal domain FGM04_00695 PF04055 Radical SAM superfamily FGM04_00700 PF00664 ABC transporter transmembrane region FGM04_00700 PF03412 Peptidase C39 family FGM04_00700 PF00005 ABC transporter FGM04_00730 PF01483 Proprotein convertase P-domain FGM04_00730 PF00082 Subtilase family FGM04_00735 PF03180 NLPA lipoprotein FGM04_00740 PF00884 Sulfatase FGM04_00740 PF11893 Domain of unknown function (DUF3413) FGM04_00745 PF07208 Protein of unknown function (DUF1414) FGM04_00750 PF04245 37-kD nucleoid-associated bacterial protein FGM04_00755 PF01547 Bacterial extracellular solute-binding protein FGM04_00760 PF14785 Maltose transport system permease protein MalF P2 domain FGM04_00760 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00765 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00770 PF00005 ABC transporter FGM04_00770 PF08402 TOBE domain FGM04_00775 PF03976 Polyphosphate kinase 2 (PPK2) FGM04_00780 PF00561 alpha/beta hydrolase fold FGM04_00790 PF01594 AI-2E family transporter FGM04_00795 PF01206 Sulfurtransferase TusA FGM04_00800 PF07720 Tetratricopeptide repeat FGM04_00800 PF01435 Peptidase family M48 FGM04_00805 PF00578 AhpC/TSA family FGM04_00810 PF03960 ArsC family FGM04_00820 PF04336 Acyl carrier protein phosphodiesterase FGM04_00830 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_00835 PF01979 Amidohydrolase family FGM04_00840 PF03956 Lysine exporter LysO FGM04_00845 PF00005 ABC transporter FGM04_00850 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_00855 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00860 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_00865 PF00849 RNA pseudouridylate synthase FGM04_00875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FGM04_00880 PF04209 homogentisate 1,2-dioxygenase FGM04_00890 PF14497 Glutathione S-transferase, C-terminal domain FGM04_00890 PF02798 Glutathione S-transferase, N-terminal domain FGM04_00895 PF03577 Peptidase family C69 FGM04_00910 PF02563 Polysaccharide biosynthesis/export protein FGM04_00910 PF10531 SLBB domain FGM04_00915 PF01061 ABC-2 type transporter FGM04_00920 PF00005 ABC transporter FGM04_00930 PF00483 Nucleotidyl transferase FGM04_00935 PF11380 Stealth protein CR2, conserved region 2 FGM04_00935 PF17101 Stealth protein CR1, conserved region 1 FGM04_00940 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 FGM04_00940 PF00535 Glycosyl transferase family 2 FGM04_00950 PF05159 Capsule polysaccharide biosynthesis protein FGM04_00955 PF05159 Capsule polysaccharide biosynthesis protein FGM04_00960 PF00733 Asparagine synthase FGM04_00960 PF13537 Glutamine amidotransferase domain FGM04_00970 PF02254 TrkA-N domain FGM04_00970 PF00999 Sodium/hydrogen exchanger family FGM04_00975 PF13344 Haloacid dehalogenase-like hydrolase FGM04_00980 PF00962 Adenosine/AMP deaminase FGM04_00985 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_00985 PF00107 Zinc-binding dehydrogenase FGM04_00990 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FGM04_00995 PF03741 Integral membrane protein TerC family FGM04_00995 PF03471 Transporter associated domain FGM04_01005 PF13183 4Fe-4S dicluster domain FGM04_01005 PF01565 FAD binding domain FGM04_01005 PF02913 FAD linked oxidases, C-terminal domain FGM04_01015 PF03061 Thioesterase superfamily FGM04_01020 PF03880 DbpA RNA binding domain FGM04_01020 PF00270 DEAD/DEAH box helicase FGM04_01020 PF00271 Helicase conserved C-terminal domain FGM04_01025 PF03553 Na+/H+ antiporter family FGM04_01025 PF13726 Na+-H+ antiporter family FGM04_01030 PF00929 Exonuclease FGM04_01035 PF01569 PAP2 superfamily FGM04_01040 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FGM04_01040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_01040 PF11890 Domain of unknown function (DUF3410) FGM04_01045 PF02774 Semialdehyde dehydrogenase, dimerisation domain FGM04_01045 PF01118 Semialdehyde dehydrogenase, NAD binding domain FGM04_01055 PF01416 tRNA pseudouridine synthase FGM04_01060 PF01039 Carboxyl transferase domain FGM04_01060 PF17848 Acetyl-coA carboxylase zinc finger domain FGM04_01065 PF08245 Mur ligase middle domain FGM04_01065 PF02875 Mur ligase family, glutamate ligase domain FGM04_01070 PF05036 Sporulation related domain FGM04_01075 PF01906 Putative heavy-metal-binding FGM04_01085 PF10414 Sirohaem synthase dimerisation region FGM04_01085 PF14824 Sirohaem biosynthesis protein central FGM04_01085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FGM04_01090 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FGM04_01090 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FGM04_01090 PF13187 4Fe-4S dicluster domain FGM04_01095 PF00175 Oxidoreductase NAD-binding domain FGM04_01095 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B FGM04_01100 PF17179 4Fe-4S dicluster domain FGM04_01105 PF01734 Patatin-like phospholipase FGM04_01110 PF17676 LD-carboxypeptidase C-terminal domain FGM04_01110 PF02016 LD-carboxypeptidase N-terminal domain FGM04_01115 PF00884 Sulfatase FGM04_01125 PF00696 Amino acid kinase family FGM04_01125 PF01842 ACT domain FGM04_01130 PF00696 Amino acid kinase family FGM04_01130 PF00583 Acetyltransferase (GNAT) family FGM04_01135 PF01625 Peptide methionine sulfoxide reductase FGM04_01155 PF00561 alpha/beta hydrolase fold FGM04_01180 PF00005 ABC transporter FGM04_01190 PF03600 Citrate transporter FGM04_01195 PF07690 Major Facilitator Superfamily FGM04_01215 PF01593 Flavin containing amine oxidoreductase FGM04_01220 PF03239 Iron permease FTR1 family FGM04_01235 PF03350 Uncharacterized protein family, UPF0114 FGM04_01240 PF00270 DEAD/DEAH box helicase FGM04_01240 PF00271 Helicase conserved C-terminal domain FGM04_01265 PF01740 STAS domain FGM04_01265 PF00916 Sulfate permease family FGM04_01280 PF00589 Phage integrase family FGM04_01280 PF02899 Phage integrase, N-terminal SAM-like domain FGM04_01285 PF01609 Transposase DDE domain FGM04_01285 PF05598 Transposase domain (DUF772) FGM04_01295 PF03432 Relaxase/Mobilisation nuclease domain FGM04_01320 PF05598 Transposase domain (DUF772) FGM04_01320 PF01609 Transposase DDE domain FGM04_01355 PF02909 Tetracyclin repressor-like, C-terminal domain FGM04_01355 PF00440 Bacterial regulatory proteins, tetR family FGM04_01360 PF07690 Major Facilitator Superfamily FGM04_01375 PF09924 Uncharacterised conserved protein (DUF2156) FGM04_01375 PF03706 Lysylphosphatidylglycerol synthase TM region FGM04_01385 PF00672 HAMP domain FGM04_01385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_01385 PF00512 His Kinase A (phospho-acceptor) domain FGM04_01390 PF00072 Response regulator receiver domain FGM04_01390 PF00486 Transcriptional regulatory protein, C terminal FGM04_01410 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain FGM04_01410 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain FGM04_01415 PF00313 'Cold-shock' DNA-binding domain FGM04_01420 PF02617 ATP-dependent Clp protease adaptor protein ClpS FGM04_01425 PF10431 C-terminal, D2-small domain, of ClpB protein FGM04_01425 PF02861 Clp amino terminal domain, pathogenicity island component FGM04_01425 PF17871 AAA lid domain FGM04_01425 PF07724 AAA domain (Cdc48 subfamily) FGM04_01425 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_01430 PF01176 Translation initiation factor 1A / IF-1 FGM04_01435 PF04377 Arginine-tRNA-protein transferase, C terminus FGM04_01435 PF04376 Arginine-tRNA-protein transferase, N terminus FGM04_01440 PF03588 Leucyl/phenylalanyl-tRNA protein transferase FGM04_01445 PF05433 Glycine zipper 2TM domain FGM04_01450 PF17158 Membrane-associated sensor, integral membrane domain FGM04_01450 PF00990 Diguanylate cyclase, GGDEF domain FGM04_01455 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_01460 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FGM04_01460 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FGM04_01465 PF01037 Lrp/AsnC ligand binding domain FGM04_01470 PF01580 FtsK/SpoIIIE family FGM04_01470 PF09397 Ftsk gamma domain FGM04_01470 PF17854 FtsK alpha domain FGM04_01470 PF13491 4TM region of DNA translocase FtsK/SpoIIIE FGM04_01475 PF03548 Outer membrane lipoprotein carrier protein LolA FGM04_01480 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_01480 PF12002 MgsA AAA+ ATPase C terminal FGM04_01480 PF16193 AAA C-terminal domain FGM04_01485 PF02403 Seryl-tRNA synthetase N-terminal domain FGM04_01485 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FGM04_01490 PF02674 Colicin V production protein FGM04_01495 PF00156 Phosphoribosyl transferase domain FGM04_01500 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) FGM04_01505 PF05191 Adenylate kinase, active site lid FGM04_01510 PF00762 Ferrochelatase FGM04_01520 PF00294 pfkB family carbohydrate kinase FGM04_01535 PF00563 EAL domain FGM04_01535 PF00990 Diguanylate cyclase, GGDEF domain FGM04_01535 PF03707 Bacterial signalling protein N terminal repeat FGM04_01540 PF00483 Nucleotidyl transferase FGM04_01550 PF07273 Protein of unknown function (DUF1439) FGM04_01560 PF11143 Protein of unknown function (DUF2919) FGM04_01565 PF01544 CorA-like Mg2+ transporter protein FGM04_01575 PF01012 Electron transfer flavoprotein domain FGM04_01580 PF01012 Electron transfer flavoprotein domain FGM04_01580 PF00766 Electron transfer flavoprotein FAD-binding domain FGM04_01585 PF00266 Aminotransferase class-V FGM04_01590 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FGM04_01595 PF00793 DAHP synthetase I family FGM04_01600 PF00672 HAMP domain FGM04_01600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_01605 PF04055 Radical SAM superfamily FGM04_01610 PF00270 DEAD/DEAH box helicase FGM04_01610 PF00271 Helicase conserved C-terminal domain FGM04_01615 PF00255 Glutathione peroxidase FGM04_01625 PF01820 D-ala D-ala ligase N-terminus FGM04_01625 PF07478 D-ala D-ala ligase C-terminus FGM04_01630 PF07748 Glycosyl hydrolases family 38 C-terminal domain FGM04_01630 PF01074 Glycosyl hydrolases family 38 N-terminal domain FGM04_01630 PF09261 Alpha mannosidase middle domain FGM04_01635 PF02378 Phosphotransferase system, EIIC FGM04_01635 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_01635 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_01640 PF00392 Bacterial regulatory proteins, gntR family FGM04_01640 PF07702 UTRA domain FGM04_01650 PF00005 ABC transporter FGM04_01650 PF12848 ABC transporter FGM04_01675 PF02371 Transposase IS116/IS110/IS902 family FGM04_01675 PF01548 Transposase FGM04_01735 PF02805 Metal binding domain of Ada FGM04_01735 PF12833 Helix-turn-helix domain FGM04_01735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FGM04_01735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FGM04_01750 PF05724 Thiopurine S-methyltransferase (TPMT) FGM04_01755 PF05193 Peptidase M16 inactive domain FGM04_01755 PF00675 Insulinase (Peptidase family M16) FGM04_01755 PF16187 Middle or third domain of peptidase_M16 FGM04_01760 PF00300 Histidine phosphatase superfamily (branch 1) FGM04_01770 PF00892 EamA-like transporter family FGM04_01775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_01780 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain FGM04_01785 PF00271 Helicase conserved C-terminal domain FGM04_01785 PF17757 UvrB interaction domain FGM04_01785 PF02559 CarD-like/TRCF domain FGM04_01785 PF00270 DEAD/DEAH box helicase FGM04_01785 PF03461 TRCF domain FGM04_01795 PF02687 FtsX-like permease family FGM04_01795 PF12704 MacB-like periplasmic core domain FGM04_01800 PF00005 ABC transporter FGM04_01805 PF12704 MacB-like periplasmic core domain FGM04_01805 PF02687 FtsX-like permease family FGM04_01825 PF05697 Bacterial trigger factor protein (TF) FGM04_01825 PF05698 Bacterial trigger factor protein (TF) C-terminus FGM04_01825 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_01830 PF00574 Clp protease FGM04_01835 PF06689 ClpX C4-type zinc finger FGM04_01835 PF07724 AAA domain (Cdc48 subfamily) FGM04_01835 PF10431 C-terminal, D2-small domain, of ClpB protein FGM04_01840 PF02190 ATP-dependent protease La (LON) substrate-binding domain FGM04_01840 PF05362 Lon protease (S16) C-terminal proteolytic domain FGM04_01840 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_01845 PF00216 Bacterial DNA-binding protein FGM04_01850 PF13145 PPIC-type PPIASE domain FGM04_01855 PF02397 Bacterial sugar transferase FGM04_01860 PF00535 Glycosyl transferase family 2 FGM04_01860 PF07238 PilZ domain FGM04_01860 PF03552 Cellulose synthase FGM04_01865 PF13439 Glycosyltransferase Family 4 FGM04_01865 PF00534 Glycosyl transferases group 1 FGM04_01890 PF13742 OB-fold nucleic acid binding domain FGM04_01890 PF02601 Exonuclease VII, large subunit FGM04_01895 PF01292 Prokaryotic cytochrome b561 FGM04_01900 PF00478 IMP dehydrogenase / GMP reductase domain FGM04_01900 PF00571 CBS domain FGM04_01905 PF00117 Glutamine amidotransferase class-I FGM04_01905 PF00958 GMP synthase C terminal domain FGM04_01905 PF02540 NAD synthase FGM04_01925 PF13358 DDE superfamily endonuclease FGM04_01925 PF13592 Winged helix-turn helix FGM04_01940 PF00474 Sodium:solute symporter family FGM04_01945 PF04341 Protein of unknown function, DUF485 FGM04_01960 PF00378 Enoyl-CoA hydratase/isomerase FGM04_01965 PF01235 Sodium:alanine symporter family FGM04_01975 PF06167 Glucose-regulated metallo-peptidase M90 FGM04_01990 PF00343 Carbohydrate phosphorylase FGM04_01995 PF00939 Sodium:sulfate symporter transmembrane region FGM04_02000 PF00085 Thioredoxin FGM04_02005 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FGM04_02005 PF00672 HAMP domain FGM04_02005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_02005 PF00512 His Kinase A (phospho-acceptor) domain FGM04_02005 PF01627 Hpt domain FGM04_02005 PF00072 Response regulator receiver domain FGM04_02010 PF00005 ABC transporter FGM04_02010 PF00664 ABC transporter transmembrane region FGM04_02015 PF00005 ABC transporter FGM04_02015 PF00664 ABC transporter transmembrane region FGM04_02040 PF08543 Phosphomethylpyrimidine kinase FGM04_02045 PF00465 Iron-containing alcohol dehydrogenase FGM04_02060 PF01928 CYTH domain FGM04_02070 PF13673 Acetyltransferase (GNAT) domain FGM04_02080 PF00285 Citrate synthase, C-terminal domain FGM04_02085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FGM04_02090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit FGM04_02095 PF02910 Fumarate reductase flavoprotein C-term FGM04_02095 PF00890 FAD binding domain FGM04_02100 PF13085 2Fe-2S iron-sulfur cluster binding domain FGM04_02105 PF16078 2-oxoglutarate dehydrogenase N-terminus FGM04_02105 PF00676 Dehydrogenase E1 component FGM04_02105 PF16870 2-oxoglutarate dehydrogenase C-terminal FGM04_02105 PF02779 Transketolase, pyrimidine binding domain FGM04_02110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FGM04_02110 PF00364 Biotin-requiring enzyme FGM04_02110 PF02817 e3 binding domain FGM04_02115 PF00549 CoA-ligase FGM04_02115 PF08442 ATP-grasp domain FGM04_02120 PF00549 CoA-ligase FGM04_02120 PF02629 CoA binding domain FGM04_02135 PF01266 FAD dependent oxidoreductase FGM04_02140 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_02145 PF00005 ABC transporter FGM04_02155 PF00392 Bacterial regulatory proteins, gntR family FGM04_02155 PF07702 UTRA domain FGM04_02160 PF00266 Aminotransferase class-V FGM04_02185 PF03918 Cytochrome C biogenesis protein FGM04_02190 PF08534 Redoxin FGM04_02195 PF01578 Cytochrome C assembly protein FGM04_02195 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FGM04_02200 PF03916 Polysulphide reductase, NrfD FGM04_02205 PF00037 4Fe-4S binding domain FGM04_02205 PF13247 4Fe-4S dicluster domain FGM04_02210 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) FGM04_02210 PF13435 Cytochrome c554 and c-prime FGM04_02215 PF02335 Cytochrome c552 FGM04_02220 PF13183 4Fe-4S dicluster domain FGM04_02220 PF02754 Cysteine-rich domain FGM04_02225 PF00890 FAD binding domain FGM04_02230 PF04324 BFD-like [2Fe-2S] binding domain FGM04_02230 PF01266 FAD dependent oxidoreductase FGM04_02235 PF02810 SEC-C motif FGM04_02240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_02240 PF17200 Single Cache domain 2 FGM04_02240 PF00672 HAMP domain FGM04_02245 PF00480 ROK family FGM04_02245 PF01047 MarR family FGM04_02255 PF01925 Sulfite exporter TauE/SafE FGM04_02260 PF03466 LysR substrate binding domain FGM04_02260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_02270 PF14525 AraC-binding-like domain FGM04_02270 PF12833 Helix-turn-helix domain FGM04_02275 PF11398 Protein of unknown function (DUF2813) FGM04_02285 PF00128 Alpha amylase, catalytic domain FGM04_02285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FGM04_02325 PF00883 Cytosol aminopeptidase family, catalytic domain FGM04_02325 PF02789 Cytosol aminopeptidase family, N-terminal domain FGM04_02330 PF13419 Haloacid dehalogenase-like hydrolase FGM04_02345 PF01207 Dihydrouridine synthase (Dus) FGM04_02350 PF04304 Protein of unknown function (DUF454) FGM04_02355 PF00156 Phosphoribosyl transferase domain FGM04_02360 PF12170 DNA polymerase III tau subunit V interacting with alpha FGM04_02360 PF12169 DNA polymerase III subunits gamma and tau domain III FGM04_02360 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding FGM04_02365 PF02575 YbaB/EbfC DNA-binding family FGM04_02370 PF01261 Xylose isomerase-like TIM barrel FGM04_02375 PF03466 LysR substrate binding domain FGM04_02375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_02385 PF03279 Bacterial lipid A biosynthesis acyltransferase FGM04_02390 PF03279 Bacterial lipid A biosynthesis acyltransferase FGM04_02405 PF00990 Diguanylate cyclase, GGDEF domain FGM04_02405 PF17151 Periplasmic sensor domain FGM04_02415 PF03104 DNA polymerase family B, exonuclease domain FGM04_02415 PF00136 DNA polymerase family B FGM04_02430 PF01863 Protein of unknown function DUF45 FGM04_02445 PF03606 C4-dicarboxylate anaerobic carrier FGM04_02460 PF05430 S-adenosyl-L-methionine-dependent methyltransferase FGM04_02460 PF01266 FAD dependent oxidoreductase FGM04_02465 PF00109 Beta-ketoacyl synthase, N-terminal domain FGM04_02465 PF02801 Beta-ketoacyl synthase, C-terminal domain FGM04_02470 PF06826 Predicted Permease Membrane Region FGM04_02470 PF02080 TrkA-C domain FGM04_02485 PF00271 Helicase conserved C-terminal domain FGM04_02485 PF02151 UvrB/uvrC motif FGM04_02485 PF17757 UvrB interaction domain FGM04_02485 PF12344 Ultra-violet resistance protein B FGM04_02485 PF04851 Type III restriction enzyme, res subunit FGM04_02495 PF09335 SNARE associated Golgi protein FGM04_02500 PF02600 Disulfide bond formation protein DsbB FGM04_02505 PF06450 Bacterial Na+/H+ antiporter B (NhaB) FGM04_02510 PF07840 FadR C-terminal domain FGM04_02510 PF00392 Bacterial regulatory proteins, gntR family FGM04_02520 PF07152 YaeQ protein FGM04_02565 PF01554 MatE FGM04_02570 PF06786 Uncharacterised protein family (UPF0253) FGM04_02580 PF00677 Lumazine binding domain FGM04_02590 PF13419 Haloacid dehalogenase-like hydrolase FGM04_02595 PF02222 ATP-grasp domain FGM04_02595 PF01370 NAD dependent epimerase/dehydratase family FGM04_02600 PF00892 EamA-like transporter family FGM04_02605 PF02525 Flavodoxin-like fold FGM04_02630 PF13509 S1 domain FGM04_02630 PF17783 CvfB-like winged helix domain FGM04_02640 PF04269 Protein of unknown function, DUF440 FGM04_02645 PF00912 Transglycosylase FGM04_02650 PF04269 Protein of unknown function, DUF440 FGM04_02655 PF03776 Septum formation topological specificity factor MinE FGM04_02660 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain FGM04_02665 PF03775 Septum formation inhibitor MinC, C-terminal domain FGM04_02665 PF05209 Septum formation inhibitor MinC, N-terminal domain FGM04_02670 PF05166 YcgL domain FGM04_02675 PF03313 Serine dehydratase alpha chain FGM04_02675 PF03315 Serine dehydratase beta chain FGM04_02685 PF03313 Serine dehydratase alpha chain FGM04_02685 PF03315 Serine dehydratase beta chain FGM04_02690 PF06865 Pyrimidine/purine nucleoside phosphorylase FGM04_02695 PF00375 Sodium:dicarboxylate symporter family FGM04_02700 PF00365 Phosphofructokinase FGM04_02705 PF00121 Triosephosphate isomerase FGM04_02710 PF02698 DUF218 domain FGM04_02720 PF17192 MukF middle domain FGM04_02720 PF17193 MukF C-terminal domain FGM04_02720 PF03882 MukF winged-helix domain FGM04_02725 PF04288 MukE-like family FGM04_02730 PF16330 MukB hinge domain FGM04_02730 PF04310 MukB N-terminal FGM04_02735 PF03330 Lytic transglycolase FGM04_02750 PF01327 Polypeptide deformylase FGM04_02785 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FGM04_02785 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FGM04_02790 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_02795 PF01546 Peptidase family M20/M25/M40 FGM04_02795 PF07687 Peptidase dimerisation domain FGM04_02800 PF01979 Amidohydrolase family FGM04_02805 PF00696 Amino acid kinase family FGM04_02810 PF07690 Major Facilitator Superfamily FGM04_02815 PF00005 ABC transporter FGM04_02820 PF01032 FecCD transport family FGM04_02830 PF00892 EamA-like transporter family FGM04_02835 PF13006 Insertion element 4 transposase N-terminal FGM04_02835 PF01609 Transposase DDE domain FGM04_02840 PF00128 Alpha amylase, catalytic domain FGM04_02845 PF04055 Radical SAM superfamily FGM04_02855 PF02824 TGS domain FGM04_02855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FGM04_02855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FGM04_02855 PF03129 Anticodon binding domain FGM04_02860 PF05198 Translation initiation factor IF-3, N-terminal domain FGM04_02860 PF00707 Translation initiation factor IF-3, C-terminal domain FGM04_02865 PF01632 Ribosomal protein L35 FGM04_02870 PF00453 Ribosomal protein L20 FGM04_02875 PF01409 tRNA synthetases class II core domain (F) FGM04_02875 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain FGM04_02880 PF03147 Ferredoxin-fold anticodon binding domain FGM04_02880 PF03484 tRNA synthetase B5 domain FGM04_02880 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain FGM04_02880 PF01588 Putative tRNA binding domain FGM04_02880 PF03483 B3/4 domain FGM04_02885 PF00216 Bacterial DNA-binding protein FGM04_02890 PF00072 Response regulator receiver domain FGM04_02890 PF09456 RcsC Alpha-Beta-Loop (ABL) FGM04_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_02890 PF00512 His Kinase A (phospho-acceptor) domain FGM04_02905 PF02146 Sir2 family FGM04_02925 PF17152 Periplasmic sensor domain FGM04_02925 PF00990 Diguanylate cyclase, GGDEF domain FGM04_02930 PF00356 Bacterial regulatory proteins, lacI family FGM04_02935 PF00294 pfkB family carbohydrate kinase FGM04_02940 PF13407 Periplasmic binding protein domain FGM04_02945 PF02653 Branched-chain amino acid transport system / permease component FGM04_02950 PF00005 ABC transporter FGM04_02955 PF05025 RbsD / FucU transport protein family FGM04_02960 PF02798 Glutathione S-transferase, N-terminal domain FGM04_02960 PF00043 Glutathione S-transferase, C-terminal domain FGM04_02970 PF13416 Bacterial extracellular solute-binding protein FGM04_02975 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_02980 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_02985 PF08402 TOBE domain FGM04_02985 PF00005 ABC transporter FGM04_03000 PF01171 PP-loop family FGM04_03005 PF00582 Universal stress protein family FGM04_03010 PF13545 Crp-like helix-turn-helix domain FGM04_03010 PF00027 Cyclic nucleotide-binding domain FGM04_03025 PF00403 Heavy-metal-associated domain FGM04_03035 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FGM04_03035 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP FGM04_03050 PF00115 Cytochrome C and Quinol oxidase polypeptide I FGM04_03060 PF13185 GAF domain FGM04_03065 PF04352 ProQ/FINO family FGM04_03065 PF17516 ProQ C-terminal domain FGM04_03070 PF11818 C-terminal domain of tail specific protease (DUF3340) FGM04_03070 PF17804 Tail specific protease N-terminal domain FGM04_03070 PF00595 PDZ domain FGM04_03070 PF03572 Peptidase family S41 FGM04_03075 PF01433 Peptidase family M1 domain FGM04_03075 PF17432 Domain of unknown function (DUF3458_C) ARM repeats FGM04_03075 PF11940 Domain of unknown function (DUF3458) Ig-like fold FGM04_03085 PF05088 Bacterial NAD-glutamate dehydrogenase FGM04_03090 PF01180 Dihydroorotate dehydrogenase FGM04_03095 PF07126 Cell-division protein ZapC FGM04_03105 PF01197 Ribosomal protein L31 FGM04_03110 PF00444 Ribosomal protein L36 FGM04_03115 PF10672 S-adenosylmethionine-dependent methyltransferase FGM04_03115 PF02926 THUMP domain FGM04_03115 PF01170 Putative RNA methylase family UPF0020 FGM04_03130 PF04957 Ribosome modulation factor FGM04_03135 PF07977 FabA-like domain FGM04_03140 PF13654 AAA domain FGM04_03140 PF05362 Lon protease (S16) C-terminal proteolytic domain FGM04_03180 PF05707 Zonular occludens toxin (Zot) FGM04_03260 PF07130 YebG protein FGM04_03265 PF01674 Lipase (class 2) FGM04_03270 PF00106 short chain dehydrogenase FGM04_03295 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain FGM04_03295 PF06974 Protein of unknown function (DUF1298) FGM04_03310 PF03972 MmgE/PrpD family FGM04_03315 PF00285 Citrate synthase, C-terminal domain FGM04_03330 PF04403 Paraquat-inducible protein A FGM04_03335 PF02470 MlaD protein FGM04_03340 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF FGM04_03340 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF FGM04_03340 PF01189 16S rRNA methyltransferase RsmB/F FGM04_03350 PF00589 Phage integrase family FGM04_03355 PF01026 TatD related DNase FGM04_03360 PF09115 DNA polymerase III, delta subunit, C terminal FGM04_03365 PF02223 Thymidylate kinase FGM04_03370 PF02618 YceG-like family FGM04_03375 PF01063 Amino-transferase class IV FGM04_03380 PF00109 Beta-ketoacyl synthase, N-terminal domain FGM04_03380 PF02801 Beta-ketoacyl synthase, C-terminal domain FGM04_03385 PF00550 Phosphopantetheine attachment site FGM04_03395 PF00698 Acyl transferase domain FGM04_03400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FGM04_03400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FGM04_03405 PF02504 Fatty acid synthesis protein FGM04_03410 PF01783 Ribosomal L32p protein family FGM04_03415 PF02620 Large ribosomal RNA subunit accumulation protein YceD FGM04_03420 PF02545 Maf-like protein FGM04_03425 PF13419 Haloacid dehalogenase-like hydrolase FGM04_03430 PF00849 RNA pseudouridylate synthase FGM04_03430 PF01479 S4 domain FGM04_03435 PF00575 S1 RNA binding domain FGM04_03435 PF10150 Ribonuclease E/G family FGM04_03435 PF12111 Polyribonucleotide phosphorylase C terminal FGM04_03445 PF01384 Phosphate transporter family FGM04_03450 PF00692 dUTPase FGM04_03455 PF00485 Phosphoribulokinase / Uridine kinase family FGM04_03460 PF10609 NUBPL iron-transfer P-loop NTPase FGM04_03465 PF09334 tRNA synthetases class I (M) FGM04_03465 PF01588 Putative tRNA binding domain FGM04_03465 PF08264 Anticodon-binding domain of tRNA FGM04_03475 PF00708 Acylphosphatase FGM04_03480 PF00672 HAMP domain FGM04_03480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_03485 PF17785 PUA-like domain FGM04_03485 PF10672 S-adenosylmethionine-dependent methyltransferase FGM04_03500 PF00586 AIR synthase related protein, N-terminal domain FGM04_03500 PF02769 AIR synthase related protein, C-terminal domain FGM04_03510 PF00753 Metallo-beta-lactamase superfamily FGM04_03515 PF01612 3'-5' exonuclease FGM04_03515 PF00570 HRDC domain FGM04_03520 PF13193 AMP-binding enzyme C-terminal domain FGM04_03520 PF00501 AMP-binding enzyme FGM04_03525 PF12697 Alpha/beta hydrolase family FGM04_03535 PF00814 Glycoprotease family FGM04_03540 PF13307 Helicase C-terminal domain FGM04_03540 PF04851 Type III restriction enzyme, res subunit FGM04_03550 PF01634 ATP phosphoribosyltransferase FGM04_03550 PF08029 HisG, C-terminal domain FGM04_03555 PF00815 Histidinol dehydrogenase FGM04_03560 PF00155 Aminotransferase class I and II FGM04_03565 PF00475 Imidazoleglycerol-phosphate dehydratase FGM04_03565 PF08645 Polynucleotide kinase 3 phosphatase FGM04_03570 PF00117 Glutamine amidotransferase class-I FGM04_03575 PF00977 Histidine biosynthesis protein FGM04_03580 PF00977 Histidine biosynthesis protein FGM04_03585 PF01502 Phosphoribosyl-AMP cyclohydrolase FGM04_03585 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase FGM04_03595 PF00990 Diguanylate cyclase, GGDEF domain FGM04_03595 PF07694 5TMR of 5TMR-LYT FGM04_03600 PF00501 AMP-binding enzyme FGM04_03600 PF13193 AMP-binding enzyme C-terminal domain FGM04_03610 PF05433 Glycine zipper 2TM domain FGM04_03615 PF01799 [2Fe-2S] binding domain FGM04_03615 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_03620 PF03450 CO dehydrogenase flavoprotein C-terminal domain FGM04_03620 PF00941 FAD binding domain in molybdopterin dehydrogenase FGM04_03625 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FGM04_03625 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FGM04_03630 PF00860 Permease family FGM04_03635 PF01979 Amidohydrolase family FGM04_03640 PF00860 Permease family FGM04_03645 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain FGM04_03645 PF01799 [2Fe-2S] binding domain FGM04_03645 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase FGM04_03650 PF00941 FAD binding domain in molybdopterin dehydrogenase FGM04_03655 PF01979 Amidohydrolase family FGM04_03660 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_03660 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FGM04_03665 PF12804 MobA-like NTP transferase domain FGM04_03675 PF02625 XdhC and CoxI family FGM04_03675 PF13478 XdhC Rossmann domain FGM04_03685 PF13006 Insertion element 4 transposase N-terminal FGM04_03685 PF01609 Transposase DDE domain FGM04_03690 PF03989 DNA gyrase C-terminal domain, beta-propeller FGM04_03690 PF00521 DNA gyrase/topoisomerase IV, subunit A FGM04_03700 PF13419 Haloacid dehalogenase-like hydrolase FGM04_03705 PF03477 ATP cone domain FGM04_03705 PF00317 Ribonucleotide reductase, all-alpha domain FGM04_03705 PF02867 Ribonucleotide reductase, barrel domain FGM04_03710 PF00268 Ribonucleotide reductase, small chain FGM04_03715 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_03720 PF03562 MltA specific insert domain FGM04_03720 PF06725 3D domain FGM04_03725 PF06945 Protein of unknown function (DUF1289) FGM04_03735 PF03613 PTS system mannose/fructose/sorbose family IID component FGM04_03740 PF03609 PTS system sorbose-specific iic component FGM04_03745 PF03830 PTS system sorbose subfamily IIB component FGM04_03745 PF03610 PTS system fructose IIA component FGM04_03760 PF00356 Bacterial regulatory proteins, lacI family FGM04_03760 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FGM04_03765 PF06560 Glucose-6-phosphate isomerase (GPI) FGM04_03770 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_03770 PF02378 Phosphotransferase system, EIIC FGM04_03775 PF00294 pfkB family carbohydrate kinase FGM04_03780 PF00381 PTS HPr component phosphorylation site FGM04_03780 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_03785 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FGM04_03785 PF00356 Bacterial regulatory proteins, lacI family FGM04_03790 PF03222 Tryptophan/tyrosine permease family FGM04_03800 PF01124 MAPEG family FGM04_03810 PF00270 DEAD/DEAH box helicase FGM04_03810 PF00271 Helicase conserved C-terminal domain FGM04_03820 PF01264 Chorismate synthase FGM04_03825 PF05175 Methyltransferase small domain FGM04_03830 PF01713 Smr domain FGM04_03835 PF08448 PAS fold FGM04_03835 PF00990 Diguanylate cyclase, GGDEF domain FGM04_03840 PF00300 Histidine phosphatase superfamily (branch 1) FGM04_03850 PF08329 Chitinase A, N-terminal domain FGM04_03850 PF00704 Glycosyl hydrolases family 18 FGM04_03860 PF08274 PhnA Zinc-Ribbon FGM04_03860 PF03831 PhnA domain FGM04_03870 PF00425 chorismate binding enzyme FGM04_03870 PF04715 Anthranilate synthase component I, N terminal region FGM04_03875 PF00293 NUDIX domain FGM04_03880 PF03222 Tryptophan/tyrosine permease family FGM04_03885 PF00375 Sodium:dicarboxylate symporter family FGM04_03890 PF09382 RQC domain FGM04_03890 PF16124 RecQ zinc-binding FGM04_03890 PF00570 HRDC domain FGM04_03890 PF00270 DEAD/DEAH box helicase FGM04_03890 PF00271 Helicase conserved C-terminal domain FGM04_03895 PF06798 PrkA serine protein kinase C-terminal domain FGM04_03895 PF08298 PrkA AAA domain FGM04_03900 PF04285 Protein of unknown function (DUF444) FGM04_03905 PF04293 SpoVR like protein FGM04_03910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FGM04_03910 PF00378 Enoyl-CoA hydratase/isomerase FGM04_03910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FGM04_03915 PF02803 Thiolase, C-terminal domain FGM04_03915 PF00108 Thiolase, N-terminal domain FGM04_03920 PF07726 ATPase family associated with various cellular activities (AAA) FGM04_03920 PF17863 AAA lid domain FGM04_03925 PF01882 Protein of unknown function DUF58 FGM04_03940 PF13519 von Willebrand factor type A domain FGM04_03950 PF08281 Sigma-70, region 4 FGM04_03950 PF04542 Sigma-70 region 2 FGM04_03960 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FGM04_03965 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) FGM04_03970 PF00563 EAL domain FGM04_03970 PF08668 HDOD domain FGM04_03975 PF00108 Thiolase, N-terminal domain FGM04_03975 PF02803 Thiolase, C-terminal domain FGM04_03980 PF09278 MerR, DNA binding FGM04_03980 PF00376 MerR family regulatory protein FGM04_03985 PF01386 Ribosomal L25p family FGM04_03995 PF04408 Helicase associated domain (HA2) FGM04_03995 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold FGM04_03995 PF00271 Helicase conserved C-terminal domain FGM04_03995 PF00270 DEAD/DEAH box helicase FGM04_03995 PF11898 Domain of unknown function (DUF3418) FGM04_04005 PF01966 HD domain FGM04_04015 PF00929 Exonuclease FGM04_04015 PF08411 Exonuclease C-terminal FGM04_04030 PF03788 LrgA family FGM04_04035 PF04172 LrgB-like family FGM04_04040 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region FGM04_04040 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FGM04_04050 PF01212 Beta-eliminating lyase FGM04_04060 PF04244 Deoxyribodipyrimidine photo-lyase-related protein FGM04_04065 PF01266 FAD dependent oxidoreductase FGM04_04070 PF02774 Semialdehyde dehydrogenase, dimerisation domain FGM04_04070 PF01118 Semialdehyde dehydrogenase, NAD binding domain FGM04_04075 PF02634 FdhD/NarQ family FGM04_04080 PF01590 GAF domain FGM04_04080 PF02954 Bacterial regulatory protein, Fis family FGM04_04080 PF00158 Sigma-54 interaction domain FGM04_04095 PF13247 4Fe-4S dicluster domain FGM04_04095 PF12800 4Fe-4S binding domain FGM04_04115 PF02705 K+ potassium transporter FGM04_04120 PF00037 4Fe-4S binding domain FGM04_04120 PF12798 4Fe-4S binding domain FGM04_04125 PF00361 Proton-conducting membrane transporter FGM04_04130 PF00146 NADH dehydrogenase FGM04_04135 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FGM04_04135 PF00374 Nickel-dependent hydrogenase FGM04_04135 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FGM04_04140 PF12838 4Fe-4S dicluster domain FGM04_04145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FGM04_04150 PF07450 Formate hydrogenlyase maturation protein HycH FGM04_04155 PF01750 Hydrogenase maturation protease FGM04_04160 PF12390 Selenocysteine synthase N terminal FGM04_04160 PF03841 L-seryl-tRNA selenium transferase FGM04_04165 PF00009 Elongation factor Tu GTP binding domain FGM04_04165 PF09107 Elongation factor SelB, winged helix FGM04_04165 PF03144 Elongation factor Tu domain 2 FGM04_04165 PF09106 Elongation factor SelB, winged helix FGM04_04165 PF09105 Elongation factor SelB, winged helix FGM04_04170 PF01300 Telomere recombination FGM04_04170 PF17788 HypF Kae1-like domain FGM04_04170 PF00708 Acylphosphatase FGM04_04170 PF07503 HypF finger FGM04_04175 PF01455 HupF/HypC family FGM04_04180 PF01924 Hydrogenase formation hypA family FGM04_04185 PF00586 AIR synthase related protein, N-terminal domain FGM04_04185 PF02769 AIR synthase related protein, C-terminal domain FGM04_04190 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA FGM04_04195 PF02492 CobW/HypB/UreG, nucleotide-binding domain FGM04_04200 PF17850 CysA C-terminal regulatory domain FGM04_04200 PF12857 TOBE-like domain FGM04_04200 PF00005 ABC transporter FGM04_04205 PF00005 ABC transporter FGM04_04210 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_04210 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04215 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_04225 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE FGM04_04230 PF01750 Hydrogenase maturation protease FGM04_04235 PF00374 Nickel-dependent hydrogenase FGM04_04240 PF03916 Polysulphide reductase, NrfD FGM04_04245 PF13247 4Fe-4S dicluster domain FGM04_04250 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal FGM04_04250 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FGM04_04255 PF00563 EAL domain FGM04_04255 PF00360 Phytochrome region FGM04_04255 PF00990 Diguanylate cyclase, GGDEF domain FGM04_04255 PF01590 GAF domain FGM04_04260 PF00534 Glycosyl transferases group 1 FGM04_04260 PF00862 Sucrose synthase FGM04_04265 PF00534 Glycosyl transferases group 1 FGM04_04265 PF13439 Glycosyltransferase Family 4 FGM04_04330 PF00534 Glycosyl transferases group 1 FGM04_04335 PF00072 Response regulator receiver domain FGM04_04335 PF00211 Adenylate and Guanylate cyclase catalytic domain FGM04_04365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_04365 PF00512 His Kinase A (phospho-acceptor) domain FGM04_04365 PF09308 LuxQ, periplasmic FGM04_04365 PF00072 Response regulator receiver domain FGM04_04375 PF03466 LysR substrate binding domain FGM04_04375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) FGM04_04390 PF07690 Major Facilitator Superfamily FGM04_04420 PF00239 Resolvase, N terminal domain FGM04_04420 PF02796 Helix-turn-helix domain of resolvase FGM04_04430 PF04002 RadC-like JAB domain FGM04_04460 PF02384 N-6 DNA Methylase FGM04_04480 PF01925 Sulfite exporter TauE/SafE FGM04_04485 PF13520 Amino acid permease FGM04_04495 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase FGM04_04495 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase FGM04_04500 PF00378 Enoyl-CoA hydratase/isomerase FGM04_04505 PF00378 Enoyl-CoA hydratase/isomerase FGM04_04510 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FGM04_04510 PF02770 Acyl-CoA dehydrogenase, middle domain FGM04_04510 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FGM04_04515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FGM04_04515 PF02770 Acyl-CoA dehydrogenase, middle domain FGM04_04515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FGM04_04520 PF01039 Carboxyl transferase domain FGM04_04525 PF00378 Enoyl-CoA hydratase/isomerase FGM04_04530 PF02785 Biotin carboxylase C-terminal domain FGM04_04530 PF00289 Biotin carboxylase, N-terminal domain FGM04_04530 PF00364 Biotin-requiring enzyme FGM04_04530 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FGM04_04535 PF00682 HMGL-like FGM04_04540 PF09278 MerR, DNA binding FGM04_04540 PF00376 MerR family regulatory protein FGM04_04555 PF01184 GPR1/FUN34/yaaH family FGM04_04580 PF03692 Putative zinc- or iron-chelating domain FGM04_04585 PF02901 Pyruvate formate lyase-like FGM04_04585 PF01228 Glycine radical FGM04_04590 PF01226 Formate/nitrite transporter FGM04_04595 PF18381 YcaO cyclodehydratase C-terminal domain FGM04_04595 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding FGM04_04600 PF00232 Glycosyl hydrolase family 1 FGM04_04605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04605 PF03466 LysR substrate binding domain FGM04_04615 PF01717 Cobalamin-independent synthase, Catalytic domain FGM04_04615 PF08267 Cobalamin-independent synthase, N-terminal domain FGM04_04620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04620 PF03466 LysR substrate binding domain FGM04_04625 PF03466 LysR substrate binding domain FGM04_04625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04630 PF00857 Isochorismatase family FGM04_04635 PF02678 Pirin FGM04_04635 PF05726 Pirin C-terminal cupin domain FGM04_04640 PF07690 Major Facilitator Superfamily FGM04_04645 PF03466 LysR substrate binding domain FGM04_04645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04650 PF03466 LysR substrate binding domain FGM04_04655 PF13460 NAD(P)H-binding FGM04_04670 PF01053 Cys/Met metabolism PLP-dependent enzyme FGM04_04675 PF00501 AMP-binding enzyme FGM04_04680 PF08891 YfcL protein FGM04_04690 PF03741 Integral membrane protein TerC family FGM04_04695 PF00691 OmpA family FGM04_04700 PF00990 Diguanylate cyclase, GGDEF domain FGM04_04700 PF17152 Periplasmic sensor domain FGM04_04710 PF18024 Helix-turn-helix domain FGM04_04710 PF00158 Sigma-54 interaction domain FGM04_04720 PF01329 Pterin 4 alpha carbinolamine dehydratase FGM04_04725 PF00351 Biopterin-dependent aromatic amino acid hydroxylase FGM04_04730 PF00171 Aldehyde dehydrogenase family FGM04_04735 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04740 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04745 PF08402 TOBE domain FGM04_04745 PF00005 ABC transporter FGM04_04750 PF13416 Bacterial extracellular solute-binding protein FGM04_04755 PF03466 LysR substrate binding domain FGM04_04755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_04760 PF05128 Domain of unknown function (DUF697) FGM04_04765 PF04317 YcjX-like family, DUF463 FGM04_04775 PF06667 Phage shock protein B FGM04_04780 PF04012 PspA/IM30 family FGM04_04785 PF02954 Bacterial regulatory protein, Fis family FGM04_04785 PF00158 Sigma-54 interaction domain FGM04_04790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_04795 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04800 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_04800 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_04805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_04805 PF00005 ABC transporter FGM04_04810 PF00005 ABC transporter FGM04_04815 PF00183 Hsp90 protein FGM04_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_04820 PF13662 Toprim domain FGM04_04820 PF02132 RecR protein FGM04_04830 PF03707 Bacterial signalling protein N terminal repeat FGM04_04830 PF00990 Diguanylate cyclase, GGDEF domain FGM04_04830 PF00563 EAL domain FGM04_04845 PF01609 Transposase DDE domain FGM04_04845 PF05598 Transposase domain (DUF772) FGM04_04855 PF00990 Diguanylate cyclase, GGDEF domain FGM04_04855 PF00563 EAL domain FGM04_04855 PF03707 Bacterial signalling protein N terminal repeat FGM04_04875 PF02371 Transposase IS116/IS110/IS902 family FGM04_04875 PF01548 Transposase FGM04_04910 PF10722 Putative bacterial sensory transduction regulator FGM04_04920 PF00265 Thymidine kinase FGM04_04925 PF03553 Na+/H+ antiporter family FGM04_04930 PF00816 H-NS histone family FGM04_04935 PF01923 Cobalamin adenosyltransferase FGM04_04940 PF12843 Putative quorum-sensing-regulated virulence factor FGM04_04945 PF04055 Radical SAM superfamily FGM04_04950 PF06508 Queuosine biosynthesis protein QueC FGM04_04965 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family FGM04_04970 PF18073 Rubredoxin metal binding domain FGM04_04980 PF00216 Bacterial DNA-binding protein FGM04_04985 PF00575 S1 RNA binding domain FGM04_04990 PF02224 Cytidylate kinase FGM04_04995 PF00925 GTP cyclohydrolase II FGM04_05000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_05000 PF03466 LysR substrate binding domain FGM04_05005 PF03466 LysR substrate binding domain FGM04_05005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_05010 PF07690 Major Facilitator Superfamily FGM04_05025 PF00881 Nitroreductase family FGM04_05030 PF03806 AbgT putative transporter family FGM04_05035 PF13188 PAS domain FGM04_05035 PF00563 EAL domain FGM04_05035 PF00990 Diguanylate cyclase, GGDEF domain FGM04_05035 PF03707 Bacterial signalling protein N terminal repeat FGM04_05040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_05040 PF03466 LysR substrate binding domain FGM04_05045 PF00072 Response regulator receiver domain FGM04_05055 PF01212 Beta-eliminating lyase FGM04_05060 PF00106 short chain dehydrogenase FGM04_05070 PF00248 Aldo/keto reductase family FGM04_05075 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) FGM04_05085 PF00005 ABC transporter FGM04_05090 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_05095 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_05100 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_05105 PF03411 Penicillin-insensitive murein endopeptidase FGM04_05115 PF04536 TPM domain FGM04_05130 PF01618 MotA/TolQ/ExbB proton channel family FGM04_05135 PF13677 Membrane MotB of proton-channel complex MotA/MotB FGM04_05135 PF00691 OmpA family FGM04_05140 PF07715 TonB-dependent Receptor Plug Domain FGM04_05140 PF00593 TonB dependent receptor FGM04_05145 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FGM04_05145 PF00326 Prolyl oligopeptidase family FGM04_05170 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 FGM04_05175 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit FGM04_05180 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit FGM04_05180 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit FGM04_05190 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit FGM04_05190 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FGM04_05195 PF00384 Molybdopterin oxidoreductase FGM04_05195 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FGM04_05195 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FGM04_05200 PF00146 NADH dehydrogenase FGM04_05205 PF12838 4Fe-4S dicluster domain FGM04_05210 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 FGM04_05215 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L FGM04_05220 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus FGM04_05220 PF00361 Proton-conducting membrane transporter FGM04_05225 PF00361 Proton-conducting membrane transporter FGM04_05230 PF00361 Proton-conducting membrane transporter FGM04_05240 PF00072 Response regulator receiver domain FGM04_05245 PF01966 HD domain FGM04_05250 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal FGM04_05250 PF02769 AIR synthase related protein, C-terminal domain FGM04_05250 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain FGM04_05255 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_05255 PF01464 Transglycosylase SLT domain FGM04_05265 PF07191 zinc-ribbons FGM04_05270 PF01926 50S ribosome-binding GTPase FGM04_05270 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal FGM04_05275 PF13360 PQQ-like domain FGM04_05280 PF09976 Tetratricopeptide repeat-like domain FGM04_05285 PF03129 Anticodon binding domain FGM04_05285 PF13393 Histidyl-tRNA synthetase FGM04_05295 PF13464 Domain of unknown function (DUF4115) FGM04_05305 PF04055 Radical SAM superfamily FGM04_05310 PF00334 Nucleoside diphosphate kinase FGM04_05315 PF00883 Cytosol aminopeptidase family, catalytic domain FGM04_05315 PF12404 Peptidase FGM04_05320 PF12404 Peptidase FGM04_05320 PF00883 Cytosol aminopeptidase family, catalytic domain FGM04_05325 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_05330 PF00012 Hsp70 protein FGM04_05335 PF07743 HSCB C-terminal oligomerisation domain FGM04_05340 PF01521 Iron-sulphur cluster biosynthesis FGM04_05345 PF01592 NifU-like N terminal domain FGM04_05350 PF00266 Aminotransferase class-V FGM04_05355 PF02082 Transcriptional regulator FGM04_05360 PF00588 SpoU rRNA Methylase family FGM04_05385 PF07719 Tetratricopeptide repeat FGM04_05385 PF13181 Tetratricopeptide repeat FGM04_05395 PF02355 Protein export membrane protein FGM04_05395 PF07549 SecD/SecF GG Motif FGM04_05400 PF07549 SecD/SecF GG Motif FGM04_05400 PF13721 SecD export protein N-terminal TM region FGM04_05400 PF02355 Protein export membrane protein FGM04_05405 PF02699 Preprotein translocase subunit FGM04_05410 PF01702 Queuine tRNA-ribosyltransferase FGM04_05415 PF02547 Queuosine biosynthesis protein FGM04_05420 PF00571 CBS domain FGM04_05425 PF00578 AhpC/TSA family FGM04_05425 PF10417 C-terminal domain of 1-Cys peroxiredoxin FGM04_05430 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_05430 PF13192 Thioredoxin domain FGM04_05470 PF00391 PEP-utilising enzyme, mobile domain FGM04_05470 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain FGM04_05470 PF02896 PEP-utilising enzyme, TIM barrel domain FGM04_05475 PF03618 Kinase/pyrophosphorylase FGM04_05485 PF00324 Amino acid permease FGM04_05505 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_05505 PF08447 PAS fold FGM04_05510 PF02347 Glycine cleavage system P-protein FGM04_05515 PF01597 Glycine cleavage H-protein FGM04_05520 PF08669 Glycine cleavage T-protein C-terminal barrel domain FGM04_05520 PF01571 Aminomethyltransferase folate-binding domain FGM04_05530 PF01494 FAD binding domain FGM04_05535 PF01494 FAD binding domain FGM04_05540 PF03695 Uncharacterised protein family (UPF0149) FGM04_05545 PF05164 Cell division protein ZapA FGM04_05555 PF07690 Major Facilitator Superfamily FGM04_05560 PF02798 Glutathione S-transferase, N-terminal domain FGM04_05560 PF00043 Glutathione S-transferase, C-terminal domain FGM04_05570 PF00459 Inositol monophosphatase family FGM04_05575 PF00672 HAMP domain FGM04_05575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_05580 PF02535 ZIP Zinc transporter FGM04_05585 PF01048 Phosphorylase superfamily FGM04_05595 PF01497 Periplasmic binding protein FGM04_05615 PF02561 Flagellar protein FliS FGM04_05620 PF07195 Flagellar hook-associated protein 2 C-terminus FGM04_05620 PF02465 Flagellar hook-associated protein 2 N-terminus FGM04_05620 PF07196 Flagellin hook IN motif FGM04_05625 PF03646 FlaG protein FGM04_05630 PF00669 Bacterial flagellin N-terminal helical region FGM04_05630 PF00700 Bacterial flagellin C-terminal helical region FGM04_05630 PF07196 Flagellin hook IN motif FGM04_05635 PF03458 UPF0126 domain FGM04_05670 PF00248 Aldo/keto reductase family FGM04_05680 PF07690 Major Facilitator Superfamily FGM04_05700 PF05114 Protein of unknown function (DUF692) FGM04_05720 PF02322 Cytochrome bd terminal oxidase subunit II FGM04_05725 PF01654 Cytochrome bd terminal oxidase subunit I FGM04_05730 PF00155 Aminotransferase class I and II FGM04_05730 PF00392 Bacterial regulatory proteins, gntR family FGM04_05740 PF04391 Protein of unknown function (DUF533) FGM04_05745 PF03061 Thioesterase superfamily FGM04_05750 PF10689 Protein of unknown function (DUF2496) FGM04_05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_05755 PF03466 LysR substrate binding domain FGM04_05760 PF07690 Major Facilitator Superfamily FGM04_05765 PF01479 S4 domain FGM04_05765 PF00849 RNA pseudouridylate synthase FGM04_05780 PF02926 THUMP domain FGM04_05780 PF02568 Thiamine biosynthesis protein (ThiI) FGM04_05795 PF00905 Penicillin binding protein transpeptidase domain FGM04_05795 PF00912 Transglycosylase FGM04_05795 PF06832 Penicillin-Binding Protein C-terminus Family FGM04_05800 PF00207 Alpha-2-macroglobulin family FGM04_05800 PF01835 MG2 domain FGM04_05800 PF07703 Alpha-2-macroglobulin bait region domain FGM04_05800 PF17962 Bacterial macroglobulin domain 6 FGM04_05800 PF07678 A-macroglobulin TED domain FGM04_05800 PF11974 Bacterial alpha-2-macroglobulin MG3 domain FGM04_05800 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain FGM04_05800 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain FGM04_05800 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain FGM04_05810 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FGM04_05810 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_05815 PF00563 EAL domain FGM04_05815 PF03707 Bacterial signalling protein N terminal repeat FGM04_05815 PF00990 Diguanylate cyclase, GGDEF domain FGM04_05820 PF04055 Radical SAM superfamily FGM04_05830 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_05835 PF05728 Uncharacterised protein family (UPF0227) FGM04_05840 PF00860 Permease family FGM04_05845 PF08439 Oligopeptidase F FGM04_05845 PF01432 Peptidase family M3 FGM04_05850 PF05661 Protein of unknown function (DUF808) FGM04_05860 PF12729 Four helix bundle sensory module for signal transduction FGM04_05860 PF00672 HAMP domain FGM04_05860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_05865 PF00375 Sodium:dicarboxylate symporter family FGM04_05880 PF01979 Amidohydrolase family FGM04_05890 PF00672 HAMP domain FGM04_05890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_05895 PF01230 HIT domain FGM04_05930 PF13721 SecD export protein N-terminal TM region FGM04_05930 PF02355 Protein export membrane protein FGM04_05930 PF07549 SecD/SecF GG Motif FGM04_05935 PF07549 SecD/SecF GG Motif FGM04_05935 PF02355 Protein export membrane protein FGM04_05940 PF00483 Nucleotidyl transferase FGM04_05945 PF00793 DAHP synthetase I family FGM04_05950 PF02153 Prephenate dehydrogenase FGM04_05950 PF01817 Chorismate mutase type II FGM04_05955 PF13609 Gram-negative porin FGM04_05960 PF06733 DEAD_2 FGM04_05960 PF13307 Helicase C-terminal domain FGM04_05970 PF00850 Histone deacetylase domain FGM04_05975 PF01926 50S ribosome-binding GTPase FGM04_05980 PF00245 Alkaline phosphatase FGM04_05985 PF00245 Alkaline phosphatase FGM04_06000 PF14760 Rnk N-terminus FGM04_06000 PF01272 Transcription elongation factor, GreA/GreB, C-term FGM04_06005 PF00072 Response regulator receiver domain FGM04_06005 PF00196 Bacterial regulatory proteins, luxR family FGM04_06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_06010 PF05231 MASE1 FGM04_06010 PF07730 Histidine kinase FGM04_06015 PF07690 Major Facilitator Superfamily FGM04_06020 PF08448 PAS fold FGM04_06020 PF00990 Diguanylate cyclase, GGDEF domain FGM04_06025 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_06030 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_06035 PF00005 ABC transporter FGM04_06045 PF04116 Fatty acid hydroxylase superfamily FGM04_06050 PF13520 Amino acid permease FGM04_06055 PF02310 B12 binding domain FGM04_06055 PF02574 Homocysteine S-methyltransferase FGM04_06055 PF00809 Pterin binding enzyme FGM04_06055 PF02965 Vitamin B12 dependent methionine synthase, activation domain FGM04_06055 PF02607 B12 binding domain FGM04_06065 PF03471 Transporter associated domain FGM04_06065 PF00571 CBS domain FGM04_06065 PF01595 Cyclin M transmembrane N-terminal domain FGM04_06070 PF01895 PhoU domain FGM04_06080 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_06085 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_06090 PF14437 MafB19-like deaminase FGM04_06100 PF01274 Malate synthase FGM04_06105 PF00463 Isocitrate lyase family FGM04_06110 PF00308 Bacterial dnaA protein FGM04_06125 PF00586 AIR synthase related protein, N-terminal domain FGM04_06125 PF02769 AIR synthase related protein, C-terminal domain FGM04_06130 PF00551 Formyl transferase FGM04_06135 PF01784 NIF3 (NGG1p interacting factor 3) FGM04_06140 PF00158 Sigma-54 interaction domain FGM04_06140 PF00072 Response regulator receiver domain FGM04_06140 PF02954 Bacterial regulatory protein, Fis family FGM04_06145 PF00512 His Kinase A (phospho-acceptor) domain FGM04_06145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_06145 PF00989 PAS fold FGM04_06150 PF02954 Bacterial regulatory protein, Fis family FGM04_06150 PF00072 Response regulator receiver domain FGM04_06150 PF00158 Sigma-54 interaction domain FGM04_06160 PF01842 ACT domain FGM04_06165 PF17941 Polyphosphate kinase C-terminal domain 1 FGM04_06165 PF02503 Polyphosphate kinase middle domain FGM04_06165 PF13089 Polyphosphate kinase N-terminal domain FGM04_06165 PF13090 Polyphosphate kinase C-terminal domain 2 FGM04_06170 PF02541 Ppx/GppA phosphatase family FGM04_06175 PF01769 Divalent cation transporter FGM04_06175 PF03448 MgtE intracellular N domain FGM04_06175 PF00571 CBS domain FGM04_06180 PF00669 Bacterial flagellin N-terminal helical region FGM04_06185 PF07196 Flagellin hook IN motif FGM04_06185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FGM04_06190 PF10135 Rod binding protein FGM04_06190 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase FGM04_06195 PF02119 Flagellar P-ring protein FGM04_06200 PF02107 Flagellar L-ring protein FGM04_06205 PF00460 Flagella basal body rod protein FGM04_06205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FGM04_06210 PF00460 Flagella basal body rod protein FGM04_06210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FGM04_06215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FGM04_06215 PF07559 Flagellar basal body protein FlaE FGM04_06215 PF00460 Flagella basal body rod protein FGM04_06220 PF13861 FlgD Tudor-like domain FGM04_06220 PF13860 FlgD Ig-like domain FGM04_06220 PF03963 Flagellar hook capping protein - N-terminal region FGM04_06225 PF00460 Flagella basal body rod protein FGM04_06225 PF06429 Flagellar basal body rod FlgEFG protein C-terminal FGM04_06230 PF00460 Flagella basal body rod protein FGM04_06235 PF01739 CheR methyltransferase, SAM binding domain FGM04_06235 PF03705 CheR methyltransferase, all-alpha domain FGM04_06240 PF00072 Response regulator receiver domain FGM04_06240 PF01584 CheW-like domain FGM04_06245 PF13144 Chaperone for flagella basal body P-ring formation FGM04_06260 PF12850 Calcineurin-like phosphoesterase superfamily domain FGM04_06265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_06275 PF00849 RNA pseudouridylate synthase FGM04_06275 PF01479 S4 domain FGM04_06280 PF01966 HD domain FGM04_06290 PF00923 Transaldolase/Fructose-6-phosphate aldolase FGM04_06295 PF04055 Radical SAM superfamily FGM04_06305 PF08220 DeoR-like helix-turn-helix domain FGM04_06305 PF00455 DeoR C terminal sensor domain FGM04_06310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_06335 PF00313 'Cold-shock' DNA-binding domain FGM04_06340 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FGM04_06340 PF02817 e3 binding domain FGM04_06340 PF00364 Biotin-requiring enzyme FGM04_06345 PF02780 Transketolase, C-terminal domain FGM04_06345 PF02779 Transketolase, pyrimidine binding domain FGM04_06350 PF00676 Dehydrogenase E1 component FGM04_06360 PF00550 Phosphopantetheine attachment site FGM04_06360 PF00668 Condensation domain FGM04_06360 PF00501 AMP-binding enzyme FGM04_06360 PF00975 Thioesterase domain FGM04_06370 PF00550 Phosphopantetheine attachment site FGM04_06370 PF00857 Isochorismatase family FGM04_06375 PF13193 AMP-binding enzyme C-terminal domain FGM04_06375 PF00501 AMP-binding enzyme FGM04_06380 PF00425 chorismate binding enzyme FGM04_06385 PF07715 TonB-dependent Receptor Plug Domain FGM04_06385 PF00593 TonB dependent receptor FGM04_06390 PF00793 DAHP synthetase I family FGM04_06395 PF00356 Bacterial regulatory proteins, lacI family FGM04_06400 PF14718 Soluble lytic murein transglycosylase L domain FGM04_06400 PF01464 Transglycosylase SLT domain FGM04_06405 PF00990 Diguanylate cyclase, GGDEF domain FGM04_06405 PF00563 EAL domain FGM04_06405 PF03707 Bacterial signalling protein N terminal repeat FGM04_06410 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FGM04_06430 PF04357 TamB, inner membrane protein subunit of TAM complex FGM04_06435 PF01103 Surface antigen FGM04_06435 PF07244 Surface antigen variable number repeat FGM04_06435 PF17243 POTRA domain TamA domain 1 FGM04_06455 PF02627 Carboxymuconolactone decarboxylase family FGM04_06460 PF00403 Heavy-metal-associated domain FGM04_06460 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FGM04_06460 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_06465 PF13416 Bacterial extracellular solute-binding protein FGM04_06475 PF00005 ABC transporter FGM04_06480 PF01066 CDP-alcohol phosphatidyltransferase FGM04_06485 PF13406 Transglycosylase SLT domain FGM04_06490 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FGM04_06490 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FGM04_06490 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FGM04_06490 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FGM04_06495 PF03925 SeqA protein C-terminal domain FGM04_06495 PF17206 SeqA protein N-terminal domain FGM04_06500 PF12697 Alpha/beta hydrolase family FGM04_06510 PF01402 Ribbon-helix-helix protein, copG family FGM04_06515 PF00258 Flavodoxin FGM04_06525 PF01475 Ferric uptake regulator family FGM04_06530 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain FGM04_06530 PF00749 tRNA synthetases class I (E and Q), catalytic domain FGM04_06535 PF03173 Putative carbohydrate binding domain FGM04_06535 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain FGM04_06535 PF02838 Glycosyl hydrolase family 20, domain 2 FGM04_06535 PF00728 Glycosyl hydrolase family 20, catalytic domain FGM04_06540 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FGM04_06540 PF00367 phosphotransferase system, EIIB FGM04_06540 PF02378 Phosphotransferase system, EIIC FGM04_06545 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase FGM04_06550 PF01979 Amidohydrolase family FGM04_06555 PF01047 MarR family FGM04_06555 PF00480 ROK family FGM04_06560 PF08019 Phosphoethanolamine transferase EptA/EptB FGM04_06560 PF00884 Sulfatase FGM04_06565 PF01966 HD domain FGM04_06570 PF07694 5TMR of 5TMR-LYT FGM04_06570 PF06580 Histidine kinase FGM04_06575 PF00072 Response regulator receiver domain FGM04_06575 PF04397 LytTr DNA-binding domain FGM04_06580 PF02554 Carbon starvation protein CstA FGM04_06585 PF11742 Protein of unknown function (DUF3302) FGM04_06590 PF00529 HlyD membrane-fusion protein of T1SS FGM04_06590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_06595 PF00271 Helicase conserved C-terminal domain FGM04_06595 PF04851 Type III restriction enzyme, res subunit FGM04_06600 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family FGM04_06605 PF00462 Glutaredoxin FGM04_06610 PF03372 Endonuclease/Exonuclease/phosphatase family FGM04_06620 PF03061 Thioesterase superfamily FGM04_06625 PF01370 NAD dependent epimerase/dehydratase family FGM04_06645 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FGM04_06645 PF10371 Domain of unknown function FGM04_06645 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FGM04_06645 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FGM04_06645 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_06650 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region FGM04_06650 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_06650 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster FGM04_06660 PF03473 MOSC domain FGM04_06660 PF03473 MOSC domain FGM04_06660 PF03476 MOSC N-terminal beta barrel domain FGM04_06660 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_06660 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_06660 PF03476 MOSC N-terminal beta barrel domain FGM04_06665 PF00939 Sodium:sulfate symporter transmembrane region FGM04_06675 PF05971 RNA methyltransferase FGM04_06680 PF00877 NlpC/P60 family FGM04_06685 PF01648 4'-phosphopantetheinyl transferase superfamily FGM04_06690 PF00085 Thioredoxin FGM04_06700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FGM04_06705 PF01842 ACT domain FGM04_06705 PF00551 Formyl transferase FGM04_06715 PF13396 Phospholipase_D-nuclease N-terminal FGM04_06715 PF13091 PLD-like domain FGM04_06730 PF01464 Transglycosylase SLT domain FGM04_06730 PF01551 Peptidase family M23 FGM04_06730 PF10145 Phage-related minor tail protein FGM04_06735 PF00230 Major intrinsic protein FGM04_06745 PF00155 Aminotransferase class I and II FGM04_06750 PF07509 Protein of unknown function (DUF1523) FGM04_06765 PF01156 Inosine-uridine preferring nucleoside hydrolase FGM04_06770 PF00849 RNA pseudouridylate synthase FGM04_06775 PF01048 Phosphorylase superfamily FGM04_06780 PF00465 Iron-containing alcohol dehydrogenase FGM04_06785 PF04355 SmpA / OmlA family FGM04_06790 PF13460 NAD(P)H-binding FGM04_06800 PF03099 Biotin/lipoate A/B protein ligase family FGM04_06800 PF10437 Bacterial lipoate protein ligase C-terminus FGM04_06805 PF00990 Diguanylate cyclase, GGDEF domain FGM04_06805 PF00563 EAL domain FGM04_06805 PF03707 Bacterial signalling protein N terminal repeat FGM04_06810 PF12704 MacB-like periplasmic core domain FGM04_06810 PF02687 FtsX-like permease family FGM04_06810 PF00005 ABC transporter FGM04_06815 PF00005 ABC transporter FGM04_06815 PF12704 MacB-like periplasmic core domain FGM04_06815 PF02687 FtsX-like permease family FGM04_06820 PF12704 MacB-like periplasmic core domain FGM04_06820 PF00005 ABC transporter FGM04_06820 PF02687 FtsX-like permease family FGM04_06830 PF00873 AcrB/AcrD/AcrF family FGM04_06845 PF04143 Sulphur transport FGM04_06860 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_06870 PF02308 MgtC family FGM04_06875 PF00356 Bacterial regulatory proteins, lacI family FGM04_06875 PF13407 Periplasmic binding protein domain FGM04_06880 PF00251 Glycosyl hydrolases family 32 N-terminal domain FGM04_06880 PF08244 Glycosyl hydrolases family 32 C terminal FGM04_06885 PF00367 phosphotransferase system, EIIB FGM04_06885 PF02378 Phosphotransferase system, EIIC FGM04_06890 PF00294 pfkB family carbohydrate kinase FGM04_06895 PF11471 Maltoporin periplasmic N-terminal extension FGM04_06895 PF02264 LamB porin FGM04_06900 PF01556 DnaJ C terminal domain FGM04_06900 PF00226 DnaJ domain FGM04_06900 PF00684 DnaJ central domain FGM04_06905 PF00012 Hsp70 protein FGM04_06910 PF01025 GrpE FGM04_06915 PF01513 ATP-NAD kinase FGM04_06920 PF02463 RecF/RecN/SMC N terminal domain FGM04_06925 PF01368 DHH family FGM04_06925 PF02833 DHHA2 domain FGM04_06930 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_06935 PF02687 FtsX-like permease family FGM04_06935 PF12704 MacB-like periplasmic core domain FGM04_06935 PF00005 ABC transporter FGM04_06940 PF02321 Outer membrane efflux protein FGM04_06945 PF00816 H-NS histone family FGM04_06955 PF06082 Exopolysaccharide biosynthesis protein YbjH FGM04_06985 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase FGM04_06990 PF04321 RmlD substrate binding domain FGM04_07000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain FGM04_07000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain FGM04_07005 PF00535 Glycosyl transferase family 2 FGM04_07015 PF13439 Glycosyltransferase Family 4 FGM04_07015 PF00534 Glycosyl transferases group 1 FGM04_07025 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_07040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family FGM04_07045 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_07050 PF00483 Nucleotidyl transferase FGM04_07055 PF16363 GDP-mannose 4,6 dehydratase FGM04_07060 PF02397 Bacterial sugar transferase FGM04_07070 PF00873 AcrB/AcrD/AcrF family FGM04_07075 PF00529 HlyD membrane-fusion protein of T1SS FGM04_07075 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_07080 PF08361 MAATS-type transcriptional repressor, C-terminal region FGM04_07080 PF00440 Bacterial regulatory proteins, tetR family FGM04_07095 PF02001 Protein of unknown function DUF134 FGM04_07110 PF00072 Response regulator receiver domain FGM04_07115 PF04055 Radical SAM superfamily FGM04_07115 PF00919 Uncharacterized protein family UPF0004 FGM04_07115 PF18693 TRAM domain FGM04_07130 PF01797 Transposase IS200 like FGM04_07145 PF14821 Threonine synthase N terminus FGM04_07145 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_07150 PF00288 GHMP kinases N terminal domain FGM04_07150 PF08544 GHMP kinases C terminal FGM04_07155 PF13840 ACT domain FGM04_07155 PF00696 Amino acid kinase family FGM04_07155 PF03447 Homoserine dehydrogenase, NAD binding domain FGM04_07155 PF00742 Homoserine dehydrogenase FGM04_07155 PF01842 ACT domain FGM04_07165 PF00588 SpoU rRNA Methylase family FGM04_07170 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) FGM04_07180 PF01479 S4 domain FGM04_07180 PF00849 RNA pseudouridylate synthase FGM04_07185 PF04079 Segregation and condensation complex subunit ScpB FGM04_07190 PF02616 Segregation and condensation protein ScpA FGM04_07195 PF01300 Telomere recombination FGM04_07200 PF02811 PHP domain FGM04_07205 PF00425 chorismate binding enzyme FGM04_07205 PF04715 Anthranilate synthase component I, N terminal region FGM04_07210 PF00117 Glutamine amidotransferase class-I FGM04_07210 PF00591 Glycosyl transferase family, a/b domain FGM04_07210 PF02885 Glycosyl transferase family, helical bundle domain FGM04_07215 PF00591 Glycosyl transferase family, a/b domain FGM04_07215 PF02885 Glycosyl transferase family, helical bundle domain FGM04_07220 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase FGM04_07220 PF00218 Indole-3-glycerol phosphate synthase FGM04_07225 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_07230 PF00290 Tryptophan synthase alpha chain FGM04_07235 PF06470 SMC proteins Flexible Hinge Domain FGM04_07235 PF02463 RecF/RecN/SMC N terminal domain FGM04_07240 PF04307 LexA-binding, inner membrane-associated putative hydrolase FGM04_07260 PF07670 Nucleoside recognition FGM04_07260 PF07662 Na+ dependent nucleoside transporter C-terminus FGM04_07260 PF01773 Na+ dependent nucleoside transporter N-terminus FGM04_07265 PF03960 ArsC family FGM04_07270 PF01758 Sodium Bile acid symporter family FGM04_07275 PF02374 Anion-transporting ATPase FGM04_07280 PF06953 Arsenical resistance operon trans-acting repressor ArsD FGM04_07300 PF03737 Aldolase/RraA FGM04_07310 PF00486 Transcriptional regulatory protein, C terminal FGM04_07310 PF00072 Response regulator receiver domain FGM04_07330 PF00664 ABC transporter transmembrane region FGM04_07330 PF00005 ABC transporter FGM04_07335 PF00664 ABC transporter transmembrane region FGM04_07335 PF00005 ABC transporter FGM04_07355 PF18389 TrmO C-terminal domain FGM04_07355 PF01980 tRNA-methyltransferase O FGM04_07360 PF01292 Prokaryotic cytochrome b561 FGM04_07370 PF00072 Response regulator receiver domain FGM04_07370 PF00486 Transcriptional regulatory protein, C terminal FGM04_07375 PF08918 PhoQ Sensor FGM04_07375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_07380 PF01189 16S rRNA methyltransferase RsmB/F FGM04_07380 PF01029 NusB family FGM04_07385 PF01042 Endoribonuclease L-PSP FGM04_07390 PF01228 Glycine radical FGM04_07390 PF02901 Pyruvate formate lyase-like FGM04_07395 PF00871 Acetokinase family FGM04_07400 PF03222 Tryptophan/tyrosine permease family FGM04_07405 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_07410 PF00462 Glutaredoxin FGM04_07415 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FGM04_07415 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FGM04_07420 PF04333 MlaA lipoprotein FGM04_07430 PF03918 Cytochrome C biogenesis protein FGM04_07435 PF08534 Redoxin FGM04_07440 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal FGM04_07440 PF01578 Cytochrome C assembly protein FGM04_07445 PF03100 CcmE FGM04_07450 PF04995 Heme exporter protein D (CcmD) FGM04_07455 PF01578 Cytochrome C assembly protein FGM04_07460 PF03379 CcmB protein FGM04_07465 PF00005 ABC transporter FGM04_07475 PF01584 CheW-like domain FGM04_07485 PF13614 AAA domain FGM04_07490 PF13677 Membrane MotB of proton-channel complex MotA/MotB FGM04_07490 PF00691 OmpA family FGM04_07495 PF01618 MotA/TolQ/ExbB proton channel family FGM04_07500 PF00072 Response regulator receiver domain FGM04_07500 PF01339 CheB methylesterase FGM04_07505 PF01627 Hpt domain FGM04_07505 PF02895 Signal transducing histidine kinase, homodimeric domain FGM04_07505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_07505 PF01584 CheW-like domain FGM04_07505 PF07194 P2 response regulator binding domain FGM04_07510 PF04344 Chemotaxis phosphatase, CheZ FGM04_07515 PF00072 Response regulator receiver domain FGM04_07520 PF04542 Sigma-70 region 2 FGM04_07520 PF04539 Sigma-70 region 3 FGM04_07520 PF04545 Sigma-70, region 4 FGM04_07525 PF10609 NUBPL iron-transfer P-loop NTPase FGM04_07530 PF00448 SRP54-type protein, GTPase domain FGM04_07535 PF00771 FHIPEP family FGM04_07540 PF01312 FlhB HrpN YscU SpaS Family FGM04_07545 PF01311 Bacterial export proteins, family 1 FGM04_07550 PF01313 Bacterial export proteins, family 3 FGM04_07555 PF00813 FliP family FGM04_07560 PF04347 Flagellar biosynthesis protein, FliO FGM04_07565 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FGM04_07570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term FGM04_07570 PF02154 Flagellar motor switch protein FliM FGM04_07590 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FGM04_07590 PF18269 T3SS EscN ATPase C-terminal domain FGM04_07600 PF14842 FliG N-terminal domain FGM04_07600 PF14841 FliG middle domain FGM04_07600 PF01706 FliG C-terminal domain FGM04_07605 PF01514 Secretory protein of YscJ/FliF family FGM04_07605 PF08345 Flagellar M-ring protein C-terminal FGM04_07610 PF02049 Flagellar hook-basal body complex protein FliE FGM04_07620 PF07969 Amidohydrolase family FGM04_07630 PF02887 Pyruvate kinase, alpha/beta domain FGM04_07630 PF00224 Pyruvate kinase, barrel domain FGM04_07635 PF01380 SIS domain FGM04_07635 PF01418 Helix-turn-helix domain, rpiR family FGM04_07640 PF02685 Glucokinase FGM04_07665 PF00672 HAMP domain FGM04_07665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_07670 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_07675 PF00860 Permease family FGM04_07680 PF00691 OmpA family FGM04_07680 PF01389 OmpA-like transmembrane domain FGM04_07685 PF00390 Malic enzyme, N-terminal domain FGM04_07685 PF03949 Malic enzyme, NAD binding domain FGM04_07690 PF12833 Helix-turn-helix domain FGM04_07695 PF01554 MatE FGM04_07700 PF10692 Protein of unknown function (DUF2498) FGM04_07705 PF00990 Diguanylate cyclase, GGDEF domain FGM04_07710 PF00860 Permease family FGM04_07720 PF01235 Sodium:alanine symporter family FGM04_07725 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FGM04_07725 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FGM04_07730 PF01699 Sodium/calcium exchanger protein FGM04_07735 PF08534 Redoxin FGM04_07745 PF00293 NUDIX domain FGM04_07760 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_07760 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FGM04_07765 PF03932 CutC family FGM04_07770 PF00480 ROK family FGM04_07780 PF01435 Peptidase family M48 FGM04_07785 PF12849 PBP superfamily domain FGM04_07790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_07790 PF11808 Phosphate regulon sensor protein PhoR FGM04_07790 PF00989 PAS fold FGM04_07790 PF00512 His Kinase A (phospho-acceptor) domain FGM04_07795 PF00486 Transcriptional regulatory protein, C terminal FGM04_07795 PF00072 Response regulator receiver domain FGM04_07800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FGM04_07805 PF01590 GAF domain FGM04_07805 PF02954 Bacterial regulatory protein, Fis family FGM04_07805 PF00158 Sigma-54 interaction domain FGM04_07810 PF00171 Aldehyde dehydrogenase family FGM04_07820 PF00892 EamA-like transporter family FGM04_07825 PF12431 Transcriptional regulator FGM04_07825 PF00072 Response regulator receiver domain FGM04_07830 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain FGM04_07830 PF17203 Single cache domain 3 FGM04_07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_07830 PF00989 PAS fold FGM04_07835 PF00390 Malic enzyme, N-terminal domain FGM04_07835 PF03949 Malic enzyme, NAD binding domain FGM04_07840 PF03390 2-hydroxycarboxylate transporter family FGM04_07845 PF01047 MarR family FGM04_07850 PF00529 HlyD membrane-fusion protein of T1SS FGM04_07850 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_07875 PF01679 Proteolipid membrane potential modulator FGM04_07885 PF03477 ATP cone domain FGM04_07885 PF13597 Anaerobic ribonucleoside-triphosphate reductase FGM04_07895 PF03119 NAD-dependent DNA ligase C4 zinc finger domain FGM04_07895 PF03120 NAD-dependent DNA ligase OB-fold domain FGM04_07895 PF00533 BRCA1 C Terminus (BRCT) domain FGM04_07895 PF12826 Helix-hairpin-helix motif FGM04_07895 PF01653 NAD-dependent DNA ligase adenylation domain FGM04_07900 PF04354 ZipA, C-terminal FtsZ-binding domain FGM04_07905 PF06470 SMC proteins Flexible Hinge Domain FGM04_07905 PF02463 RecF/RecN/SMC N terminal domain FGM04_07915 PF03458 UPF0126 domain FGM04_07925 PF05951 Bacterial protein of unknown function (DUF882) FGM04_07930 PF01471 Putative peptidoglycan binding domain FGM04_07930 PF03734 L,D-transpeptidase catalytic domain FGM04_07945 PF00535 Glycosyl transferase family 2 FGM04_07960 PF00128 Alpha amylase, catalytic domain FGM04_07970 PF00072 Response regulator receiver domain FGM04_07970 PF00196 Bacterial regulatory proteins, luxR family FGM04_07990 PF02254 TrkA-N domain FGM04_07990 PF02080 TrkA-C domain FGM04_07990 PF00999 Sodium/hydrogen exchanger family FGM04_07995 PF00990 Diguanylate cyclase, GGDEF domain FGM04_08000 PF11734 TilS substrate C-terminal domain FGM04_08000 PF09179 TilS substrate binding domain FGM04_08000 PF01171 PP-loop family FGM04_08005 PF05649 Peptidase family M13 FGM04_08005 PF01431 Peptidase family M13 FGM04_08015 PF08543 Phosphomethylpyrimidine kinase FGM04_08020 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain FGM04_08020 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain FGM04_08020 PF01276 Orn/Lys/Arg decarboxylase, major domain FGM04_08025 PF13520 Amino acid permease FGM04_08030 PF18500 CadC C-terminal domain 1 FGM04_08030 PF00486 Transcriptional regulatory protein, C terminal FGM04_08035 PF13520 Amino acid permease FGM04_08040 PF03466 LysR substrate binding domain FGM04_08040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08045 PF12706 Beta-lactamase superfamily domain FGM04_08060 PF03466 LysR substrate binding domain FGM04_08060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08070 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FGM04_08070 PF00205 Thiamine pyrophosphate enzyme, central domain FGM04_08070 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_08075 PF03306 Alpha-acetolactate decarboxylase FGM04_08080 PF03466 LysR substrate binding domain FGM04_08080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08085 PF00579 tRNA synthetases class I (W and Y) FGM04_08090 PF01476 LysM domain FGM04_08090 PF01551 Peptidase family M23 FGM04_08090 PF08525 Opacity-associated protein A N-terminal motif FGM04_08095 PF03702 Anhydro-N-acetylmuramic acid kinase FGM04_08105 PF01042 Endoribonuclease L-PSP FGM04_08115 PF01965 DJ-1/PfpI family FGM04_08120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08120 PF03466 LysR substrate binding domain FGM04_08125 PF00698 Acyl transferase domain FGM04_08125 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_08125 PF14765 Polyketide synthase dehydratase FGM04_08125 PF16197 Ketoacyl-synthetase C-terminal extension FGM04_08125 PF00550 Phosphopantetheine attachment site FGM04_08125 PF02801 Beta-ketoacyl synthase, C-terminal domain FGM04_08125 PF08659 KR domain FGM04_08125 PF00109 Beta-ketoacyl synthase, N-terminal domain FGM04_08140 PF02779 Transketolase, pyrimidine binding domain FGM04_08140 PF00456 Transketolase, thiamine diphosphate binding domain FGM04_08140 PF02780 Transketolase, C-terminal domain FGM04_08145 PF02772 S-adenosylmethionine synthetase, central domain FGM04_08145 PF02773 S-adenosylmethionine synthetase, C-terminal domain FGM04_08145 PF00438 S-adenosylmethionine synthetase, N-terminal domain FGM04_08150 PF17283 SprT-like zinc ribbon domain FGM04_08150 PF10263 SprT-like family FGM04_08155 PF04231 Endonuclease I FGM04_08160 PF04452 RNA methyltransferase FGM04_08165 PF02951 Prokaryotic glutathione synthetase, N-terminal domain FGM04_08165 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain FGM04_08170 PF02622 Uncharacterized ACR, COG1678 FGM04_08175 PF03652 Holliday junction resolvase FGM04_08180 PF00854 POT family FGM04_08185 PF03466 LysR substrate binding domain FGM04_08185 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08190 PF07690 Major Facilitator Superfamily FGM04_08195 PF07726 ATPase family associated with various cellular activities (AAA) FGM04_08195 PF17863 AAA lid domain FGM04_08205 PF01841 Transglutaminase-like superfamily FGM04_08205 PF11992 Domain of unknown function (DUF3488) FGM04_08205 PF13559 Domain of unknown function (DUF4129) FGM04_08210 PF01235 Sodium:alanine symporter family FGM04_08215 PF00923 Transaldolase/Fructose-6-phosphate aldolase FGM04_08225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit FGM04_08230 PF07733 Bacterial DNA polymerase III alpha NTPase domain FGM04_08230 PF14579 Helix-hairpin-helix motif FGM04_08230 PF02811 PHP domain FGM04_08230 PF01336 OB-fold nucleic acid binding domain FGM04_08230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain FGM04_08235 PF01351 Ribonuclease HII FGM04_08240 PF02684 Lipid-A-disaccharide synthetase FGM04_08245 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_08245 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 FGM04_08250 PF07977 FabA-like domain FGM04_08255 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_08255 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD FGM04_08260 PF03938 Outer membrane protein (OmpH-like) FGM04_08265 PF01103 Surface antigen FGM04_08265 PF07244 Surface antigen variable number repeat FGM04_08270 PF02163 Peptidase family M50 FGM04_08270 PF17820 PDZ domain FGM04_08275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase FGM04_08275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain FGM04_08275 PF13288 DXP reductoisomerase C-terminal domain FGM04_08285 PF01255 Putative undecaprenyl diphosphate synthase FGM04_08290 PF01765 Ribosome recycling factor FGM04_08295 PF00696 Amino acid kinase family FGM04_08300 PF00889 Elongation factor TS FGM04_08305 PF00318 Ribosomal protein S2 FGM04_08310 PF00557 Metallopeptidase family M24 FGM04_08315 PF01966 HD domain FGM04_08315 PF01909 Nucleotidyltransferase domain FGM04_08315 PF08335 GlnD PII-uridylyltransferase FGM04_08315 PF01842 ACT domain FGM04_08320 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_08320 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal FGM04_08320 PF14602 Hexapeptide repeat of succinyl-transferase FGM04_08325 PF11944 Protein of unknown function (DUF3461) FGM04_08330 PF02378 Phosphotransferase system, EIIC FGM04_08330 PF00367 phosphotransferase system, EIIB FGM04_08335 PF07148 Maltose operon periplasmic protein precursor (MalM) FGM04_08340 PF02264 LamB porin FGM04_08345 PF00258 Flavodoxin FGM04_08350 PF00849 RNA pseudouridylate synthase FGM04_08355 PF04287 tRNA pseudouridine synthase C FGM04_08380 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) FGM04_08385 PF07348 Syd protein (SUKH-2) FGM04_08390 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term FGM04_08390 PF14489 QueF-like protein FGM04_08400 PF00990 Diguanylate cyclase, GGDEF domain FGM04_08400 PF17158 Membrane-associated sensor, integral membrane domain FGM04_08405 PF03641 Possible lysine decarboxylase FGM04_08405 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases FGM04_08405 PF11892 Domain of unknown function (DUF3412) FGM04_08410 PF01367 5'-3' exonuclease, C-terminal SAM fold FGM04_08410 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FGM04_08415 PF18324 Hypothetical protein TT1725 FGM04_08415 PF00180 Isocitrate/isopropylmalate dehydrogenase FGM04_08425 PF01728 FtsJ-like methyltransferase FGM04_08425 PF18125 RlmM ferredoxin-like domain FGM04_08430 PF04241 Protein of unknown function (DUF423) FGM04_08440 PF03466 LysR substrate binding domain FGM04_08440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_08445 PF00672 HAMP domain FGM04_08450 PF11799 impB/mucB/samB family C-terminal domain FGM04_08450 PF11798 IMS family HHH motif FGM04_08450 PF00817 impB/mucB/samB family FGM04_08460 PF01965 DJ-1/PfpI family FGM04_08465 PF08546 Ketopantoate reductase PanE/ApbA C terminal FGM04_08465 PF02558 Ketopantoate reductase PanE/ApbA FGM04_08470 PF04461 Protein of unknown function (DUF520) FGM04_08475 PF03502 Nucleoside-specific channel-forming protein, Tsx FGM04_08480 PF07690 Major Facilitator Superfamily FGM04_08485 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD FGM04_08495 PF05175 Methyltransferase small domain FGM04_08500 PF01722 BolA-like protein FGM04_08505 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) FGM04_08505 PF11973 NQRA C-terminal domain FGM04_08510 PF03116 NQR2, RnfD, RnfE family FGM04_08515 PF04205 FMN-binding domain FGM04_08520 PF02508 Rnf-Nqr subunit, membrane protein FGM04_08525 PF02508 Rnf-Nqr subunit, membrane protein FGM04_08530 PF00175 Oxidoreductase NAD-binding domain FGM04_08530 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_08530 PF00970 Oxidoreductase FAD-binding domain FGM04_08535 PF02424 ApbE family FGM04_08580 PF00106 short chain dehydrogenase FGM04_08590 PF00875 DNA photolyase FGM04_08590 PF03441 FAD binding domain of DNA photolyase FGM04_08595 PF13411 MerR HTH family regulatory protein FGM04_08600 PF08349 Protein of unknown function (DUF1722) FGM04_08615 PF06508 Queuosine biosynthesis protein QueC FGM04_08630 PF00800 Prephenate dehydratase FGM04_08630 PF01817 Chorismate mutase type II FGM04_08660 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_08665 PF03573 outer membrane porin, OprD family FGM04_08670 PF00106 short chain dehydrogenase FGM04_08695 PF02074 Carboxypeptidase Taq (M32) metallopeptidase FGM04_08725 PF00114 Pilin (bacterial filament) FGM04_08725 PF07963 Prokaryotic N-terminal methylation motif FGM04_08730 PF06029 AlkA N-terminal domain FGM04_08730 PF12833 Helix-turn-helix domain FGM04_08730 PF02805 Metal binding domain of Ada FGM04_08730 PF00730 HhH-GPD superfamily base excision DNA repair protein FGM04_08735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FGM04_08735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FGM04_08740 PF01136 Peptidase family U32 FGM04_08740 PF12392 Collagenase FGM04_08745 PF01810 LysE type translocator FGM04_08750 PF03466 LysR substrate binding domain FGM04_08750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_08760 PF02743 Cache domain FGM04_08760 PF00672 HAMP domain FGM04_08775 PF01627 Hpt domain FGM04_08775 PF07194 P2 response regulator binding domain FGM04_08775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_08775 PF01584 CheW-like domain FGM04_08775 PF02895 Signal transducing histidine kinase, homodimeric domain FGM04_08780 PF00672 HAMP domain FGM04_08780 PF12729 Four helix bundle sensory module for signal transduction FGM04_08780 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_08785 PF01584 CheW-like domain FGM04_08790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_08790 PF00672 HAMP domain FGM04_08795 PF01739 CheR methyltransferase, SAM binding domain FGM04_08795 PF03705 CheR methyltransferase, all-alpha domain FGM04_08800 PF03975 CheD chemotactic sensory transduction FGM04_08805 PF00072 Response regulator receiver domain FGM04_08805 PF01339 CheB methylesterase FGM04_08810 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain FGM04_08810 PF01138 3' exoribonuclease family, domain 1 FGM04_08810 PF03725 3' exoribonuclease family, domain 2 FGM04_08810 PF00575 S1 RNA binding domain FGM04_08810 PF00013 KH domain FGM04_08815 PF00312 Ribosomal protein S15 FGM04_08820 PF01509 TruB family pseudouridylate synthase (N terminal domain) FGM04_08820 PF09157 Pseudouridine synthase II TruB, C-terminal FGM04_08820 PF16198 tRNA pseudouridylate synthase B C-terminal domain FGM04_08825 PF02033 Ribosome-binding factor A FGM04_08830 PF04760 Translation initiation factor IF-2, N-terminal region FGM04_08830 PF00009 Elongation factor Tu GTP binding domain FGM04_08830 PF11987 Translation-initiation factor 2 FGM04_08830 PF08364 Bacterial translation initiation factor IF-2 associated region FGM04_08835 PF00575 S1 RNA binding domain FGM04_08835 PF13184 NusA-like KH domain FGM04_08835 PF08529 NusA N-terminal domain FGM04_08840 PF17384 RimP C-terminal SH3 domain FGM04_08840 PF02576 RimP N-terminal domain FGM04_08855 PF03840 Preprotein translocase SecG subunit FGM04_08860 PF00121 Triosephosphate isomerase FGM04_08865 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain FGM04_08865 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I FGM04_08865 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III FGM04_08865 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II FGM04_08870 PF00809 Pterin binding enzyme FGM04_08875 PF01434 Peptidase family M41 FGM04_08875 PF06480 FtsH Extracellular FGM04_08875 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_08875 PF17862 AAA+ lid domain FGM04_08880 PF01728 FtsJ-like methyltransferase FGM04_08885 PF01985 CRS1 / YhbY (CRM) domain FGM04_08895 PF01272 Transcription elongation factor, GreA/GreB, C-term FGM04_08895 PF03449 Transcription elongation factor, N-terminal FGM04_08900 PF13677 Membrane MotB of proton-channel complex MotA/MotB FGM04_08900 PF00691 OmpA family FGM04_08905 PF01618 MotA/TolQ/ExbB proton channel family FGM04_08910 PF02609 Exonuclease VII small subunit FGM04_08915 PF00348 Polyprenyl synthetase FGM04_08920 PF02779 Transketolase, pyrimidine binding domain FGM04_08920 PF02780 Transketolase, C-terminal domain FGM04_08920 PF13292 1-deoxy-D-xylulose-5-phosphate synthase FGM04_08935 PF00474 Sodium:solute symporter family FGM04_08940 PF02378 Phosphotransferase system, EIIC FGM04_08940 PF00367 phosphotransferase system, EIIB FGM04_08940 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FGM04_08945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_08945 PF03466 LysR substrate binding domain FGM04_08950 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_08950 PF00107 Zinc-binding dehydrogenase FGM04_08960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FGM04_08960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_08965 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_08965 PF12464 Maltose acetyltransferase FGM04_08970 PF00881 Nitroreductase family FGM04_08975 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_08975 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FGM04_08980 PF01343 Peptidase family S49 FGM04_08985 PF07715 TonB-dependent Receptor Plug Domain FGM04_08985 PF00593 TonB dependent receptor FGM04_09005 PF01243 Pyridoxamine 5'-phosphate oxidase FGM04_09010 PF06228 Haem utilisation ChuX/HutX FGM04_09020 PF01032 FecCD transport family FGM04_09025 PF00005 ABC transporter FGM04_09035 PF07694 5TMR of 5TMR-LYT FGM04_09035 PF06580 Histidine kinase FGM04_09040 PF04397 LytTr DNA-binding domain FGM04_09040 PF00072 Response regulator receiver domain FGM04_09045 PF13722 5TM C-terminal transporter carbon starvation CstA FGM04_09045 PF02554 Carbon starvation protein CstA FGM04_09050 PF03575 Peptidase family S51 FGM04_09055 PF01894 Uncharacterised protein family UPF0047 FGM04_09060 PF00842 Alanine racemase, C-terminal domain FGM04_09060 PF01168 Alanine racemase, N-terminal domain FGM04_09065 PF00772 DnaB-like helicase N terminal domain FGM04_09065 PF03796 DnaB-like helicase C terminal domain FGM04_09075 PF02872 5'-nucleotidase, C-terminal domain FGM04_09075 PF00149 Calcineurin-like phosphoesterase FGM04_09095 PF00158 Sigma-54 interaction domain FGM04_09095 PF02954 Bacterial regulatory protein, Fis family FGM04_09095 PF00072 Response regulator receiver domain FGM04_09100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_09100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FGM04_09110 PF04102 SlyX FGM04_09125 PF00294 pfkB family carbohydrate kinase FGM04_09130 PF04227 Indigoidine synthase A like protein FGM04_09135 PF00194 Eukaryotic-type carbonic anhydrase FGM04_09140 PF00561 alpha/beta hydrolase fold FGM04_09155 PF06877 Regulator of ribonuclease activity B FGM04_09160 PF00563 EAL domain FGM04_09160 PF03707 Bacterial signalling protein N terminal repeat FGM04_09160 PF00990 Diguanylate cyclase, GGDEF domain FGM04_09250 PF02080 TrkA-C domain FGM04_09250 PF06826 Predicted Permease Membrane Region FGM04_09255 PF03006 Haemolysin-III related FGM04_09260 PF00282 Pyridoxal-dependent decarboxylase conserved domain FGM04_09265 PF04279 Intracellular septation protein A FGM04_09270 PF03795 YCII-related domain FGM04_09275 PF00459 Inositol monophosphatase family FGM04_09280 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ FGM04_09285 PF11967 Recombination protein O N terminal FGM04_09285 PF02565 Recombination protein O C terminal FGM04_09290 PF07650 KH domain FGM04_09290 PF01926 50S ribosome-binding GTPase FGM04_09295 PF14622 Ribonuclease-III-like FGM04_09295 PF00035 Double-stranded RNA binding motif FGM04_09300 PF10502 Signal peptidase, peptidase S26 FGM04_09305 PF06421 GTP-binding protein LepA C-terminus FGM04_09305 PF00679 Elongation factor G C-terminus FGM04_09305 PF03144 Elongation factor Tu domain 2 FGM04_09305 PF00009 Elongation factor Tu GTP binding domain FGM04_09315 PF03888 MucB/RseB N-terminal domain FGM04_09315 PF17188 MucB/RseB C-terminal domain FGM04_09320 PF03873 Anti sigma-E protein RseA, C-terminal domain FGM04_09320 PF03872 Anti sigma-E protein RseA, N-terminal domain FGM04_09325 PF08281 Sigma-70, region 4 FGM04_09325 PF04542 Sigma-70 region 2 FGM04_09330 PF00890 FAD binding domain FGM04_09330 PF02910 Fumarate reductase flavoprotein C-term FGM04_09340 PF03937 Flavinator of succinate dehydrogenase FGM04_09345 PF01571 Aminomethyltransferase folate-binding domain FGM04_09350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_09350 PF03466 LysR substrate binding domain FGM04_09365 PF03091 CutA1 divalent ion tolerance protein FGM04_09370 PF11412 Disulphide bond corrector protein DsbC FGM04_09370 PF02683 Cytochrome C biogenesis protein transmembrane region FGM04_09390 PF01266 FAD dependent oxidoreductase FGM04_09395 PF01116 Fructose-bisphosphate aldolase class-II FGM04_09400 PF00162 Phosphoglycerate kinase FGM04_09405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FGM04_09405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FGM04_09410 PF00480 ROK family FGM04_09415 PF01208 Uroporphyrinogen decarboxylase (URO-D) FGM04_09420 PF09297 NADH pyrophosphatase zinc ribbon domain FGM04_09420 PF00293 NUDIX domain FGM04_09425 PF18327 Proline utilization A proline dehydrogenase N-terminal domain FGM04_09425 PF01619 Proline dehydrogenase FGM04_09425 PF00171 Aldehyde dehydrogenase family FGM04_09425 PF14850 DNA-binding domain of Proline dehydrogenase FGM04_09430 PF08239 Bacterial SH3 domain FGM04_09435 PF00027 Cyclic nucleotide-binding domain FGM04_09435 PF00520 Ion transport protein FGM04_09440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_09440 PF00672 HAMP domain FGM04_09440 PF02743 Cache domain FGM04_09445 PF00749 tRNA synthetases class I (E and Q), catalytic domain FGM04_09450 PF00672 HAMP domain FGM04_09450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_09460 PF00313 'Cold-shock' DNA-binding domain FGM04_09500 PF00929 Exonuclease FGM04_09505 PF03193 RsgA GTPase FGM04_09510 PF02666 Phosphatidylserine decarboxylase FGM04_09515 PF09905 DNA-binding protein VF530 FGM04_09530 PF00171 Aldehyde dehydrogenase family FGM04_09535 PF00696 Amino acid kinase family FGM04_09535 PF01472 PUA domain FGM04_09540 PF07417 Sigma factor-binding transcriptional regulator Crl FGM04_09550 PF00156 Phosphoribosyl transferase domain FGM04_09560 PF01546 Peptidase family M20/M25/M40 FGM04_09560 PF07687 Peptidase dimerisation domain FGM04_09565 PF05099 Tellurite resistance protein TerB FGM04_09565 PF00226 DnaJ domain FGM04_09570 PF00483 Nucleotidyl transferase FGM04_09575 PF01636 Phosphotransferase enzyme family FGM04_09580 PF03968 OstA-like protein FGM04_09580 PF04453 LPS transport system D FGM04_09585 PF00639 PPIC-type PPIASE domain FGM04_09585 PF09312 SurA N-terminal domain FGM04_09590 PF04166 Pyridoxal phosphate biosynthetic protein PdxA FGM04_09595 PF00398 Ribosomal RNA adenine dimethylase FGM04_09600 PF04379 ApaG domain FGM04_09605 PF00149 Calcineurin-like phosphoesterase FGM04_09620 PF00296 Luciferase-like monooxygenase FGM04_09635 PF01018 GTP1/OBG FGM04_09635 PF01926 50S ribosome-binding GTPase FGM04_09640 PF01016 Ribosomal L27 protein FGM04_09645 PF00829 Ribosomal prokaryotic L21 protein FGM04_09650 PF00348 Polyprenyl synthetase FGM04_09655 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) FGM04_09660 PF01145 SPFH domain / Band 7 family FGM04_09665 PF01145 SPFH domain / Band 7 family FGM04_09665 PF12221 Bacterial membrane protein N terminal FGM04_09670 PF16360 GTP-binding GTPase Middle Region FGM04_09670 PF13167 GTP-binding GTPase N-terminal FGM04_09670 PF01926 50S ribosome-binding GTPase FGM04_09675 PF17209 Hfq protein FGM04_09685 PF01119 DNA mismatch repair protein, C-terminal domain FGM04_09685 PF08676 MutL C terminal dimerisation domain FGM04_09690 PF01119 DNA mismatch repair protein, C-terminal domain FGM04_09690 PF08676 MutL C terminal dimerisation domain FGM04_09695 PF01520 N-acetylmuramoyl-L-alanine amidase FGM04_09700 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE FGM04_09705 PF01256 Carbohydrate kinase FGM04_09705 PF03853 YjeF-related protein N-terminus FGM04_09710 PF08331 Domain of unknown function (DUF1730) FGM04_09715 PF00480 ROK family FGM04_09725 PF09383 NIL domain FGM04_09725 PF00005 ABC transporter FGM04_09730 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_09735 PF03180 NLPA lipoprotein FGM04_09740 PF02357 Transcription termination factor nusG FGM04_09745 PF00672 HAMP domain FGM04_09745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_09750 PF00563 EAL domain FGM04_09750 PF00990 Diguanylate cyclase, GGDEF domain FGM04_09750 PF03707 Bacterial signalling protein N terminal repeat FGM04_09755 PF09456 RcsC Alpha-Beta-Loop (ABL) FGM04_09755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_09755 PF00072 Response regulator receiver domain FGM04_09755 PF00512 His Kinase A (phospho-acceptor) domain FGM04_09765 PF01966 HD domain FGM04_09765 PF13286 Phosphohydrolase-associated domain FGM04_09770 PF01627 Hpt domain FGM04_09770 PF00072 Response regulator receiver domain FGM04_09770 PF00989 PAS fold FGM04_09770 PF18415 Histidine kinase receptor ArcB trans-membrane domain FGM04_09770 PF00512 His Kinase A (phospho-acceptor) domain FGM04_09770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_09790 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FGM04_09795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_09795 PF03466 LysR substrate binding domain FGM04_09805 PF01259 SAICAR synthetase FGM04_09810 PF06804 NlpB/DapX lipoprotein FGM04_09815 PF00701 Dihydrodipicolinate synthetase family FGM04_09820 PF01842 ACT domain FGM04_09825 PF00578 AhpC/TSA family FGM04_09830 PF03887 YfbU domain FGM04_09835 PF04217 Protein of unknown function, DUF412 FGM04_09840 PF00871 Acetokinase family FGM04_09845 PF07085 DRTGG domain FGM04_09845 PF01515 Phosphate acetyl/butaryl transferase FGM04_09855 PF00483 Nucleotidyl transferase FGM04_09860 PF00854 POT family FGM04_09865 PF00072 Response regulator receiver domain FGM04_09895 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_09900 PF02321 Outer membrane efflux protein FGM04_09905 PF01207 Dihydrouridine synthase (Dus) FGM04_09910 PF02954 Bacterial regulatory protein, Fis family FGM04_09930 PF00717 Peptidase S24-like FGM04_09945 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FGM04_09945 PF18766 SWI2/SNF2 ATPase FGM04_09945 PF11867 Domain of unknown function (DUF3387) FGM04_09955 PF07728 AAA domain (dynein-related subfamily) FGM04_09955 PF12102 Domain of unknown function (DUF3578) FGM04_09960 PF18766 SWI2/SNF2 ATPase FGM04_09960 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FGM04_09960 PF11867 Domain of unknown function (DUF3387) FGM04_09970 PF01420 Type I restriction modification DNA specificity domain FGM04_09975 PF02384 N-6 DNA Methylase FGM04_09980 PF14338 Mrr N-terminal domain FGM04_09980 PF04471 Restriction endonuclease FGM04_09985 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A FGM04_10025 PF04002 RadC-like JAB domain FGM04_10070 PF05930 Prophage CP4-57 regulatory protein (AlpA) FGM04_10100 PF01546 Peptidase family M20/M25/M40 FGM04_10105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_10105 PF03466 LysR substrate binding domain FGM04_10110 PF01810 LysE type translocator FGM04_10115 PF10369 Small subunit of acetolactate synthase FGM04_10120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_10120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FGM04_10120 PF00205 Thiamine pyrophosphate enzyme, central domain FGM04_10135 PF01569 PAP2 superfamily FGM04_10145 PF00682 HMGL-like FGM04_10145 PF08502 LeuA allosteric (dimerisation) domain FGM04_10150 PF00180 Isocitrate/isopropylmalate dehydrogenase FGM04_10155 PF00330 Aconitase family (aconitate hydratase) FGM04_10160 PF00694 Aconitase C-terminal domain FGM04_10185 PF00005 ABC transporter FGM04_10190 PF02562 PhoH-like protein FGM04_10190 PF13638 PIN domain FGM04_10200 PF00317 Ribonucleotide reductase, all-alpha domain FGM04_10200 PF02867 Ribonucleotide reductase, barrel domain FGM04_10200 PF08343 Ribonucleotide reductase N-terminal FGM04_10230 PF00990 Diguanylate cyclase, GGDEF domain FGM04_10230 PF03707 Bacterial signalling protein N terminal repeat FGM04_10230 PF00563 EAL domain FGM04_10240 PF00118 TCP-1/cpn60 chaperonin family FGM04_10245 PF00166 Chaperonin 10 Kd subunit FGM04_10255 PF04186 FxsA cytoplasmic membrane protein FGM04_10260 PF10415 Fumarase C C-terminus FGM04_10260 PF00206 Lyase FGM04_10265 PF03605 Anaerobic c4-dicarboxylate membrane transporter FGM04_10270 PF00814 Glycoprotease family FGM04_10275 PF01165 Ribosomal protein S21 FGM04_10280 PF09424 Yqey-like protein FGM04_10285 PF01807 CHC2 zinc finger FGM04_10285 PF08278 DNA primase DnaG DnaB-binding FGM04_10285 PF08275 DNA primase catalytic core, N-terminal domain FGM04_10285 PF10410 DnaB-helicase binding domain of primase FGM04_10290 PF04539 Sigma-70 region 3 FGM04_10290 PF04545 Sigma-70, region 4 FGM04_10290 PF00140 Sigma-70 factor, region 1.2 FGM04_10290 PF03979 Sigma-70 factor, region 1.1 FGM04_10290 PF04546 Sigma-70, non-essential region FGM04_10290 PF04542 Sigma-70 region 2 FGM04_10310 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain FGM04_10310 PF02843 Phosphoribosylglycinamide synthetase, C domain FGM04_10310 PF02844 Phosphoribosylglycinamide synthetase, N domain FGM04_10315 PF02142 MGS-like domain FGM04_10315 PF01808 AICARFT/IMPCHase bienzyme FGM04_10320 PF13411 MerR HTH family regulatory protein FGM04_10325 PF03889 Alternative ribosome-rescue factor A FGM04_10330 PF06969 HemN C-terminal domain FGM04_10330 PF04055 Radical SAM superfamily FGM04_10335 PF01725 Ham1 family FGM04_10340 PF07690 Major Facilitator Superfamily FGM04_10345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FGM04_10345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain FGM04_10355 PF13302 Acetyltransferase (GNAT) domain FGM04_10360 PF13302 Acetyltransferase (GNAT) domain FGM04_10365 PF07504 Fungalysin/Thermolysin Propeptide Motif FGM04_10365 PF01447 Thermolysin metallopeptidase, catalytic domain FGM04_10365 PF03413 Peptidase propeptide and YPEB domain FGM04_10365 PF04151 Bacterial pre-peptidase C-terminal domain FGM04_10365 PF02868 Thermolysin metallopeptidase, alpha-helical domain FGM04_10370 PF03466 LysR substrate binding domain FGM04_10370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_10375 PF07690 Major Facilitator Superfamily FGM04_10380 PF00583 Acetyltransferase (GNAT) family FGM04_10385 PF03144 Elongation factor Tu domain 2 FGM04_10385 PF00009 Elongation factor Tu GTP binding domain FGM04_10385 PF16658 Class II release factor RF3, C-terminal domain FGM04_10395 PF00072 Response regulator receiver domain FGM04_10395 PF00990 Diguanylate cyclase, GGDEF domain FGM04_10400 PF05762 VWA domain containing CoxE-like protein FGM04_10405 PF17868 AAA lid domain FGM04_10405 PF07728 AAA domain (dynein-related subfamily) FGM04_10405 PF12592 Protein of unknown function (DUF3763) FGM04_10425 PF00501 AMP-binding enzyme FGM04_10430 PF04262 Glutamate-cysteine ligase FGM04_10435 PF05193 Peptidase M16 inactive domain FGM04_10435 PF00675 Insulinase (Peptidase family M16) FGM04_10440 PF09335 SNARE associated Golgi protein FGM04_10445 PF00107 Zinc-binding dehydrogenase FGM04_10445 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_10470 PF00970 Oxidoreductase FAD-binding domain FGM04_10470 PF00175 Oxidoreductase NAD-binding domain FGM04_10475 PF01281 Ribosomal protein L9, N-terminal domain FGM04_10475 PF03948 Ribosomal protein L9, C-terminal domain FGM04_10480 PF01084 Ribosomal protein S18 FGM04_10485 PF01250 Ribosomal protein S6 FGM04_10490 PF01566 Natural resistance-associated macrophage protein FGM04_10495 PF01411 tRNA synthetases class II (A) FGM04_10495 PF02272 DHHA1 domain FGM04_10495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FGM04_10505 PF00216 Bacterial DNA-binding protein FGM04_10510 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ FGM04_10515 PF07238 PilZ domain FGM04_10520 PF18073 Rubredoxin metal binding domain FGM04_10535 PF18429 Domain of unknown function (DUF5609) FGM04_10545 PF01048 Phosphorylase superfamily FGM04_10550 PF01676 Metalloenzyme superfamily FGM04_10555 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain FGM04_10555 PF02885 Glycosyl transferase family, helical bundle domain FGM04_10555 PF00591 Glycosyl transferase family, a/b domain FGM04_10560 PF01791 DeoC/LacD family aldolase FGM04_10570 PF01773 Na+ dependent nucleoside transporter N-terminus FGM04_10570 PF07670 Nucleoside recognition FGM04_10570 PF07662 Na+ dependent nucleoside transporter C-terminus FGM04_10575 PF01026 TatD related DNase FGM04_10580 PF07963 Prokaryotic N-terminal methylation motif FGM04_10580 PF14245 Type IV pilin PilA FGM04_10590 PF02664 S-Ribosylhomocysteinase (LuxS) FGM04_10600 PF00543 Nitrogen regulatory protein P-II FGM04_10605 PF00795 Carbon-nitrogen hydrolase FGM04_10605 PF02540 NAD synthase FGM04_10625 PF05567 Neisseria PilC beta-propeller domain FGM04_10645 PF14245 Type IV pilin PilA FGM04_10645 PF07963 Prokaryotic N-terminal methylation motif FGM04_10650 PF02401 LytB protein FGM04_10655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_10660 PF01252 Signal peptidase (SPase) II FGM04_10665 PF06827 Zinc finger found in FPG and IleRS FGM04_10665 PF00133 tRNA synthetases class I (I, L, M and V) FGM04_10665 PF08264 Anticodon-binding domain of tRNA FGM04_10670 PF06574 FAD synthetase FGM04_10670 PF01687 Riboflavin kinase FGM04_10675 PF03023 Lipid II flippase MurJ FGM04_10680 PF01649 Ribosomal protein S20 FGM04_10685 PF01022 Bacterial regulatory protein, arsR family FGM04_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_10690 PF03466 LysR substrate binding domain FGM04_10700 PF06965 Na+/H+ antiporter 1 FGM04_10705 PF08534 Redoxin FGM04_10710 PF00403 Heavy-metal-associated domain FGM04_10715 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FGM04_10715 PF17967 Pullulanase N2 domain FGM04_10715 PF18494 Pullulanase Ins domain FGM04_10715 PF03714 Bacterial pullanase-associated domain FGM04_10715 PF11852 Domain of unknown function (DUF3372) FGM04_10725 PF00543 Nitrogen regulatory protein P-II FGM04_10730 PF00472 RF-1 domain FGM04_10735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain FGM04_10735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain FGM04_10745 PF03883 Peroxide stress protein YaaA FGM04_10750 PF00437 Type II/IV secretion system protein FGM04_10755 PF00437 Type II/IV secretion system protein FGM04_10760 PF01168 Alanine racemase, N-terminal domain FGM04_10765 PF14748 Pyrroline-5-carboxylate reductase dimerisation FGM04_10765 PF03807 NADP oxidoreductase coenzyme F420-dependent FGM04_10770 PF02325 YGGT family FGM04_10775 PF02594 Uncharacterised ACR, YggU family COG1872 FGM04_10785 PF01773 Na+ dependent nucleoside transporter N-terminus FGM04_10785 PF07670 Nucleoside recognition FGM04_10785 PF07662 Na+ dependent nucleoside transporter C-terminus FGM04_10790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_10790 PF03466 LysR substrate binding domain FGM04_10795 PF00255 Glutathione peroxidase FGM04_10805 PF02595 Glycerate kinase family FGM04_10810 PF02447 GntP family permease FGM04_10815 PF17853 GGDEF-like domain FGM04_10815 PF05651 Putative sugar diacid recognition FGM04_10815 PF13556 PucR C-terminal helix-turn-helix domain FGM04_10820 PF06062 Uncharacterised protein family (UPF0231) FGM04_10840 PF03372 Endonuclease/Exonuclease/phosphatase family FGM04_10850 PF00271 Helicase conserved C-terminal domain FGM04_10850 PF00270 DEAD/DEAH box helicase FGM04_10870 PF02028 BCCT, betaine/carnitine/choline family transporter FGM04_10875 PF12627 Probable RNA and SrmB- binding site of polymerase A FGM04_10875 PF01743 Poly A polymerase head domain FGM04_10875 PF01966 HD domain FGM04_10880 PF10576 Iron-sulfur binding domain of endonuclease III FGM04_10880 PF00633 Helix-hairpin-helix motif FGM04_10880 PF00730 HhH-GPD superfamily base excision DNA repair protein FGM04_10880 PF14815 NUDIX domain FGM04_10885 PF04362 Bacterial Fe(2+) trafficking FGM04_10890 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain FGM04_10890 PF01464 Transglycosylase SLT domain FGM04_10895 PF04076 Bacterial OB fold (BOF) protein FGM04_10900 PF00657 GDSL-like Lipase/Acylhydrolase FGM04_10905 PF00691 OmpA family FGM04_10905 PF01389 OmpA-like transmembrane domain FGM04_10910 PF00990 Diguanylate cyclase, GGDEF domain FGM04_10915 PF00575 S1 RNA binding domain FGM04_10915 PF00773 RNB domain FGM04_10915 PF08206 Ribonuclease B OB domain FGM04_10915 PF08461 Ribonuclease R winged-helix domain FGM04_10915 PF17876 Cold shock domain FGM04_10920 PF08032 RNA 2'-O ribose methyltransferase substrate binding FGM04_10920 PF00588 SpoU rRNA Methylase family FGM04_10930 PF13673 Acetyltransferase (GNAT) domain FGM04_10935 PF00271 Helicase conserved C-terminal domain FGM04_10935 PF00270 DEAD/DEAH box helicase FGM04_10940 PF05175 Methyltransferase small domain FGM04_10945 PF05525 Branched-chain amino acid transport protein FGM04_10950 PF05525 Branched-chain amino acid transport protein FGM04_10965 PF01475 Ferric uptake regulator family FGM04_10970 PF01207 Dihydrouridine synthase (Dus) FGM04_10975 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_10975 PF08447 PAS fold FGM04_10985 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_10995 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_11000 PF10952 Protein of unknown function (DUF2753) FGM04_11005 PF00378 Enoyl-CoA hydratase/isomerase FGM04_11020 PF00106 short chain dehydrogenase FGM04_11025 PF04073 Aminoacyl-tRNA editing domain FGM04_11025 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) FGM04_11025 PF03129 Anticodon binding domain FGM04_11030 PF01938 TRAM domain FGM04_11030 PF05958 tRNA (Uracil-5-)-methyltransferase FGM04_11035 PF00303 Thymidylate synthase FGM04_11040 PF01790 Prolipoprotein diacylglyceryl transferase FGM04_11045 PF01590 GAF domain FGM04_11045 PF02896 PEP-utilising enzyme, TIM barrel domain FGM04_11045 PF00391 PEP-utilising enzyme, mobile domain FGM04_11045 PF05524 PEP-utilising enzyme, N-terminal FGM04_11050 PF00293 NUDIX domain FGM04_11055 PF02976 DNA mismatch repair enzyme MutH FGM04_11065 PF01245 Ribosomal protein L19 FGM04_11070 PF01746 tRNA (Guanine-1)-methyltransferase FGM04_11075 PF01782 RimM N-terminal domain FGM04_11075 PF05239 PRC-barrel domain FGM04_11080 PF00886 Ribosomal protein S16 FGM04_11085 PF02978 Signal peptide binding domain FGM04_11085 PF02881 SRP54-type protein, helical bundle domain FGM04_11085 PF00448 SRP54-type protein, GTPase domain FGM04_11090 PF01578 Cytochrome C assembly protein FGM04_11095 PF03471 Transporter associated domain FGM04_11095 PF00571 CBS domain FGM04_11095 PF01595 Cyclin M transmembrane N-terminal domain FGM04_11100 PF02082 Transcriptional regulator FGM04_11105 PF00175 Oxidoreductase NAD-binding domain FGM04_11105 PF00042 Globin FGM04_11105 PF00970 Oxidoreductase FAD-binding domain FGM04_11110 PF08238 Sel1 repeat FGM04_11115 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain FGM04_11115 PF00056 lactate/malate dehydrogenase, NAD binding domain FGM04_11120 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_11125 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_11130 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_11135 PF00005 ABC transporter FGM04_11140 PF01316 Arginine repressor, DNA binding domain FGM04_11140 PF02863 Arginine repressor, C-terminal domain FGM04_11145 PF04261 Dyp-type peroxidase family FGM04_11150 PF08402 TOBE domain FGM04_11150 PF00005 ABC transporter FGM04_11160 PF13416 Bacterial extracellular solute-binding protein FGM04_11170 PF02583 Metal-sensitive transcriptional repressor FGM04_11175 PF00155 Aminotransferase class I and II FGM04_11180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_11180 PF03466 LysR substrate binding domain FGM04_11190 PF04055 Radical SAM superfamily FGM04_11195 PF11230 Protein of unknown function (DUF3029) FGM04_11220 PF00970 Oxidoreductase FAD-binding domain FGM04_11220 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_11220 PF00175 Oxidoreductase NAD-binding domain FGM04_11235 PF17200 Single Cache domain 2 FGM04_11235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_11235 PF00672 HAMP domain FGM04_11240 PF18416 N-acetylglucosamine binding protein domain 2 FGM04_11240 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FGM04_11245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_11245 PF03466 LysR substrate binding domain FGM04_11250 PF12857 TOBE-like domain FGM04_11250 PF00005 ABC transporter FGM04_11255 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_11260 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_11275 PF13194 Domain of unknown function (DUF4010) FGM04_11280 PF12464 Maltose acetyltransferase FGM04_11280 PF14602 Hexapeptide repeat of succinyl-transferase FGM04_11295 PF13419 Haloacid dehalogenase-like hydrolase FGM04_11300 PF00293 NUDIX domain FGM04_11305 PF00459 Inositol monophosphatase family FGM04_11310 PF03222 Tryptophan/tyrosine permease family FGM04_11315 PF01588 Putative tRNA binding domain FGM04_11320 PF02311 AraC-like ligand binding domain FGM04_11320 PF12833 Helix-turn-helix domain FGM04_11325 PF01340 Met Apo-repressor, MetJ FGM04_11330 PF01053 Cys/Met metabolism PLP-dependent enzyme FGM04_11335 PF00696 Amino acid kinase family FGM04_11335 PF00742 Homoserine dehydrogenase FGM04_11335 PF03447 Homoserine dehydrogenase, NAD binding domain FGM04_11340 PF01384 Phosphate transporter family FGM04_11345 PF01865 Protein of unknown function DUF47 FGM04_11355 PF00701 Dihydrodipicolinate synthetase family FGM04_11360 PF08468 Methyltransferase small domain N-terminal FGM04_11360 PF05175 Methyltransferase small domain FGM04_11365 PF00483 Nucleotidyl transferase FGM04_11370 PF08323 Starch synthase catalytic domain FGM04_11370 PF00534 Glycosyl transferases group 1 FGM04_11410 PF03553 Na+/H+ antiporter family FGM04_11415 PF01521 Iron-sulphur cluster biosynthesis FGM04_11425 PF00654 Voltage gated chloride channel FGM04_11430 PF00202 Aminotransferase class-III FGM04_11445 PF13462 Thioredoxin FGM04_11445 PF06965 Na+/H+ antiporter 1 FGM04_11475 PF18339 RapA N-terminal Tudor like domain 1 FGM04_11475 PF00271 Helicase conserved C-terminal domain FGM04_11475 PF18337 RapA N-terminal Tudor like domain FGM04_11475 PF00176 SNF2 family N-terminal domain FGM04_11475 PF12137 RNA polymerase recycling family C-terminal FGM04_11480 PF00849 RNA pseudouridylate synthase FGM04_11490 PF12464 Maltose acetyltransferase FGM04_11490 PF14602 Hexapeptide repeat of succinyl-transferase FGM04_11495 PF11941 Domain of unknown function (DUF3459) FGM04_11495 PF00128 Alpha amylase, catalytic domain FGM04_11500 PF02378 Phosphotransferase system, EIIC FGM04_11500 PF00367 phosphotransferase system, EIIB FGM04_11505 PF00356 Bacterial regulatory proteins, lacI family FGM04_11520 PF00710 Asparaginase, N-terminal FGM04_11520 PF17763 Glutaminase/Asparaginase C-terminal domain FGM04_11525 PF03471 Transporter associated domain FGM04_11525 PF01595 Cyclin M transmembrane N-terminal domain FGM04_11525 PF00571 CBS domain FGM04_11530 PF09335 SNARE associated Golgi protein FGM04_11535 PF00768 D-alanyl-D-alanine carboxypeptidase FGM04_11570 PF02599 Global regulator protein family FGM04_11575 PF01842 ACT domain FGM04_11575 PF00696 Amino acid kinase family FGM04_11575 PF13840 ACT domain FGM04_11580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain FGM04_11580 PF01411 tRNA synthetases class II (A) FGM04_11580 PF02272 DHHA1 domain FGM04_11585 PF02631 RecX family FGM04_11590 PF00154 recA bacterial DNA recombination protein FGM04_11595 PF02464 Competence-damaged protein FGM04_11600 PF05190 MutS family domain IV FGM04_11600 PF01624 MutS domain I FGM04_11600 PF00488 MutS domain V FGM04_11600 PF05192 MutS domain III FGM04_11600 PF05188 MutS domain II FGM04_11605 PF01734 Patatin-like phospholipase FGM04_11615 PF04172 LrgB-like family FGM04_11620 PF03788 LrgA family FGM04_11625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_11625 PF03466 LysR substrate binding domain FGM04_11635 PF04073 Aminoacyl-tRNA editing domain FGM04_11650 PF04055 Radical SAM superfamily FGM04_11650 PF06968 Biotin and Thiamin Synthesis associated domain FGM04_11655 PF05690 Thiazole biosynthesis protein ThiG FGM04_11665 PF00899 ThiF family FGM04_11670 PF02581 Thiamine monophosphate synthase FGM04_11675 PF01964 Radical SAM ThiC family FGM04_11675 PF13667 ThiC-associated domain FGM04_11680 PF03440 Aerolysin/Pertussis toxin (APT) domain FGM04_11680 PF01117 Aerolysin toxin FGM04_11695 PF00072 Response regulator receiver domain FGM04_11695 PF00486 Transcriptional regulatory protein, C terminal FGM04_11705 PF18030 RimK PreATP-grasp domain FGM04_11705 PF08443 RimK-like ATP-grasp domain FGM04_11710 PF00809 Pterin binding enzyme FGM04_11710 PF02965 Vitamin B12 dependent methionine synthase, activation domain FGM04_11710 PF02607 B12 binding domain FGM04_11710 PF02310 B12 binding domain FGM04_11710 PF02574 Homocysteine S-methyltransferase FGM04_11715 PF00999 Sodium/hydrogen exchanger family FGM04_11740 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) FGM04_11750 PF07690 Major Facilitator Superfamily FGM04_11755 PF01914 MarC family integral membrane protein FGM04_11765 PF13580 SIS domain FGM04_11770 PF00367 phosphotransferase system, EIIB FGM04_11770 PF02378 Phosphotransferase system, EIIC FGM04_11775 PF00267 Gram-negative porin FGM04_11780 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) FGM04_11785 PF01380 SIS domain FGM04_11785 PF01418 Helix-turn-helix domain, rpiR family FGM04_11790 PF01523 Putative modulator of DNA gyrase FGM04_11795 PF00795 Carbon-nitrogen hydrolase FGM04_11810 PF13502 AsmA-like C-terminal region FGM04_11810 PF13116 Protein of unknown function FGM04_11815 PF00575 S1 RNA binding domain FGM04_11815 PF10150 Ribonuclease E/G family FGM04_11820 PF02545 Maf-like protein FGM04_11825 PF04093 rod shape-determining protein MreD FGM04_11830 PF04085 rod shape-determining protein MreC FGM04_11860 PF14245 Type IV pilin PilA FGM04_11860 PF07963 Prokaryotic N-terminal methylation motif FGM04_11865 PF07963 Prokaryotic N-terminal methylation motif FGM04_11865 PF00114 Pilin (bacterial filament) FGM04_11880 PF00482 Type II secretion system (T2SS), protein F FGM04_11885 PF00437 Type II/IV secretion system protein FGM04_11885 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FGM04_11900 PF00263 Bacterial type II and III secretion system protein FGM04_11900 PF03958 Bacterial type II/III secretion system short domain FGM04_11930 PF00563 EAL domain FGM04_11930 PF17157 Gammaproteobacterial periplasmic sensor domain FGM04_11930 PF00990 Diguanylate cyclase, GGDEF domain FGM04_11935 PF00563 EAL domain FGM04_11935 PF12792 CSS motif domain associated with EAL FGM04_11940 PF01699 Sodium/calcium exchanger protein FGM04_11945 PF00221 Aromatic amino acid lyase FGM04_11950 PF17391 Urocanase N-terminal domain FGM04_11950 PF01175 Urocanase Rossmann-like domain FGM04_11950 PF17392 Urocanase C-terminal domain FGM04_11955 PF00491 Arginase family FGM04_11960 PF01979 Amidohydrolase family FGM04_11965 PF07702 UTRA domain FGM04_11965 PF00392 Bacterial regulatory proteins, gntR family FGM04_11970 PF00484 Carbonic anhydrase FGM04_11975 PF04545 Sigma-70, region 4 FGM04_11975 PF00140 Sigma-70 factor, region 1.2 FGM04_11975 PF04542 Sigma-70 region 2 FGM04_11980 PF18075 FtsX extracellular domain FGM04_11985 PF00005 ABC transporter FGM04_11990 PF00448 SRP54-type protein, GTPase domain FGM04_11990 PF02881 SRP54-type protein, helical bundle domain FGM04_12015 PF00999 Sodium/hydrogen exchanger family FGM04_12015 PF02254 TrkA-N domain FGM04_12020 PF02525 Flavodoxin-like fold FGM04_12025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12025 PF03466 LysR substrate binding domain FGM04_12030 PF00106 short chain dehydrogenase FGM04_12045 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain FGM04_12045 PF00326 Prolyl oligopeptidase family FGM04_12060 PF13091 PLD-like domain FGM04_12065 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_12065 PF01464 Transglycosylase SLT domain FGM04_12075 PF02416 mttA/Hcf106 family FGM04_12080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12080 PF03466 LysR substrate binding domain FGM04_12085 PF01914 MarC family integral membrane protein FGM04_12090 PF10678 Protein of unknown function (DUF2492) FGM04_12095 PF00375 Sodium:dicarboxylate symporter family FGM04_12105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12105 PF03466 LysR substrate binding domain FGM04_12110 PF13533 Biotin-lipoyl like FGM04_12115 PF07690 Major Facilitator Superfamily FGM04_12120 PF07947 YhhN family FGM04_12135 PF00440 Bacterial regulatory proteins, tetR family FGM04_12180 PF00009 Elongation factor Tu GTP binding domain FGM04_12180 PF03144 Elongation factor Tu domain 2 FGM04_12180 PF03143 Elongation factor Tu C-terminal domain FGM04_12185 PF03764 Elongation factor G, domain IV FGM04_12185 PF14492 Elongation Factor G, domain II FGM04_12185 PF00679 Elongation factor G C-terminus FGM04_12185 PF00009 Elongation factor Tu GTP binding domain FGM04_12185 PF03144 Elongation factor Tu domain 2 FGM04_12190 PF00177 Ribosomal protein S7p/S5e FGM04_12195 PF00164 Ribosomal protein S12/S23 FGM04_12200 PF04077 DsrH like protein FGM04_12205 PF02635 DsrE/DsrF-like family FGM04_12210 PF02635 DsrE/DsrF-like family FGM04_12215 PF01042 Endoribonuclease L-PSP FGM04_12220 PF08348 YheO-like PAS domain FGM04_12220 PF13309 HTH domain FGM04_12225 PF04998 RNA polymerase Rpb1, domain 5 FGM04_12225 PF05000 RNA polymerase Rpb1, domain 4 FGM04_12225 PF04997 RNA polymerase Rpb1, domain 1 FGM04_12225 PF00623 RNA polymerase Rpb1, domain 2 FGM04_12225 PF04983 RNA polymerase Rpb1, domain 3 FGM04_12230 PF04565 RNA polymerase Rpb2, domain 3 FGM04_12230 PF04561 RNA polymerase Rpb2, domain 2 FGM04_12230 PF10385 RNA polymerase beta subunit external 1 domain FGM04_12230 PF00562 RNA polymerase Rpb2, domain 6 FGM04_12230 PF04563 RNA polymerase beta subunit FGM04_12230 PF04560 RNA polymerase Rpb2, domain 7 FGM04_12235 PF16320 Ribosomal protein L7/L12 dimerisation domain FGM04_12235 PF00542 Ribosomal protein L7/L12 C-terminal domain FGM04_12240 PF00466 Ribosomal protein L10 FGM04_12245 PF00687 Ribosomal protein L1p/L10e family FGM04_12250 PF03946 Ribosomal protein L11, N-terminal domain FGM04_12250 PF00298 Ribosomal protein L11, RNA binding domain FGM04_12255 PF02357 Transcription termination factor nusG FGM04_12255 PF00467 KOW motif FGM04_12260 PF00584 SecE/Sec61-gamma subunits of protein translocation complex FGM04_12270 PF03143 Elongation factor Tu C-terminal domain FGM04_12270 PF00009 Elongation factor Tu GTP binding domain FGM04_12270 PF03144 Elongation factor Tu domain 2 FGM04_12285 PF00485 Phosphoribulokinase / Uridine kinase family FGM04_12290 PF03099 Biotin/lipoate A/B protein ligase family FGM04_12290 PF02237 Biotin protein ligase C terminal domain FGM04_12290 PF08279 HTH domain FGM04_12295 PF01565 FAD binding domain FGM04_12295 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain FGM04_12300 PF02254 TrkA-N domain FGM04_12300 PF02080 TrkA-C domain FGM04_12305 PF02386 Cation transport protein FGM04_12325 PF01131 DNA topoisomerase FGM04_12325 PF01751 Toprim domain FGM04_12335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_12335 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_12335 PF00512 His Kinase A (phospho-acceptor) domain FGM04_12340 PF03264 NapC/NirT cytochrome c family, N-terminal region FGM04_12345 PF01568 Molydopterin dinucleotide binding domain FGM04_12345 PF00384 Molybdopterin oxidoreductase FGM04_12345 PF18364 Molybdopterin oxidoreductase N-terminal domain FGM04_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_12355 PF08918 PhoQ Sensor FGM04_12360 PF00072 Response regulator receiver domain FGM04_12360 PF00486 Transcriptional regulatory protein, C terminal FGM04_12375 PF01794 Ferric reductase like transmembrane component FGM04_12380 PF00174 Oxidoreductase molybdopterin binding domain FGM04_12390 PF06496 Protein of unknown function (DUF1097) FGM04_12395 PF00158 Sigma-54 interaction domain FGM04_12395 PF00072 Response regulator receiver domain FGM04_12405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_12405 PF00512 His Kinase A (phospho-acceptor) domain FGM04_12425 PF00478 IMP dehydrogenase / GMP reductase domain FGM04_12425 PF00571 CBS domain FGM04_12430 PF10063 Uncharacterized integral membrane protein (DUF2301) FGM04_12440 PF01037 Lrp/AsnC ligand binding domain FGM04_12445 PF03590 Aspartate-ammonia ligase FGM04_12450 PF07724 AAA domain (Cdc48 subfamily) FGM04_12450 PF17871 AAA lid domain FGM04_12450 PF10431 C-terminal, D2-small domain, of ClpB protein FGM04_12450 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_12450 PF02861 Clp amino terminal domain, pathogenicity island component FGM04_12460 PF00849 RNA pseudouridylate synthase FGM04_12460 PF01479 S4 domain FGM04_12465 PF13525 Outer membrane lipoprotein FGM04_12470 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_12470 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FGM04_12475 PF00375 Sodium:dicarboxylate symporter family FGM04_12480 PF03313 Serine dehydratase alpha chain FGM04_12485 PF08348 YheO-like PAS domain FGM04_12485 PF13309 HTH domain FGM04_12495 PF02233 NAD(P) transhydrogenase beta subunit FGM04_12500 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch FGM04_12500 PF01262 Alanine dehydrogenase/PNT, C-terminal domain FGM04_12500 PF05222 Alanine dehydrogenase/PNT, N-terminal domain FGM04_12505 PF00465 Iron-containing alcohol dehydrogenase FGM04_12510 PF12833 Helix-turn-helix domain FGM04_12510 PF06719 AraC-type transcriptional regulator N-terminus FGM04_12515 PF08212 Lipocalin-like domain FGM04_12520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_12520 PF00672 HAMP domain FGM04_12520 PF02743 Cache domain FGM04_12530 PF03466 LysR substrate binding domain FGM04_12530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12550 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FGM04_12550 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FGM04_12555 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain FGM04_12555 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain FGM04_12560 PF02863 Arginine repressor, C-terminal domain FGM04_12560 PF01316 Arginine repressor, DNA binding domain FGM04_12565 PF03606 C4-dicarboxylate anaerobic carrier FGM04_12570 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FGM04_12570 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FGM04_12575 PF00696 Amino acid kinase family FGM04_12595 PF06969 HemN C-terminal domain FGM04_12595 PF04055 Radical SAM superfamily FGM04_12600 PF10675 Protein of unknown function (DUF2489) FGM04_12605 PF04220 Der GTPase activator (YihI) FGM04_12615 PF00034 Cytochrome c FGM04_12620 PF01926 50S ribosome-binding GTPase FGM04_12630 PF01488 Shikimate / quinate 5-dehydrogenase FGM04_12630 PF18317 Shikimate 5'-dehydrogenase C-terminal domain FGM04_12630 PF08501 Shikimate dehydrogenase substrate binding domain FGM04_12635 PF01218 Coproporphyrinogen III oxidase FGM04_12640 PF01300 Telomere recombination FGM04_12645 PF00731 AIR carboxylase FGM04_12650 PF01396 Topoisomerase DNA binding C4 zinc finger FGM04_12655 PF04361 Protein of unknown function (DUF494) FGM04_12660 PF17782 DprA winged helix domain FGM04_12660 PF02481 DNA recombination-mediator protein A FGM04_12665 PF01476 LysM domain FGM04_12670 PF01327 Polypeptide deformylase FGM04_12675 PF00551 Formyl transferase FGM04_12675 PF02911 Formyl transferase, C-terminal domain FGM04_12680 PF01029 NusB family FGM04_12680 PF01189 16S rRNA methyltransferase RsmB/F FGM04_12685 PF02080 TrkA-C domain FGM04_12685 PF02254 TrkA-N domain FGM04_12690 PF02386 Cation transport protein FGM04_12700 PF00120 Glutamine synthetase, catalytic domain FGM04_12700 PF03951 Glutamine synthetase, beta-Grasp domain FGM04_12710 PF00512 His Kinase A (phospho-acceptor) domain FGM04_12710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_12710 PF00989 PAS fold FGM04_12715 PF00158 Sigma-54 interaction domain FGM04_12715 PF02954 Bacterial regulatory protein, Fis family FGM04_12715 PF00072 Response regulator receiver domain FGM04_12720 PF00962 Adenosine/AMP deaminase FGM04_12725 PF02646 RmuC family FGM04_12740 PF02082 Transcriptional regulator FGM04_12745 PF00294 pfkB family carbohydrate kinase FGM04_12750 PF03466 LysR substrate binding domain FGM04_12750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12755 PF00958 GMP synthase C terminal domain FGM04_12755 PF02540 NAD synthase FGM04_12755 PF00117 Glutamine amidotransferase class-I FGM04_12760 PF00171 Aldehyde dehydrogenase family FGM04_12765 PF00202 Aminotransferase class-III FGM04_12770 PF01381 Helix-turn-helix FGM04_12770 PF07883 Cupin domain FGM04_12775 PF00171 Aldehyde dehydrogenase family FGM04_12785 PF00892 EamA-like transporter family FGM04_12790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_12790 PF00672 HAMP domain FGM04_12790 PF17200 Single Cache domain 2 FGM04_12795 PF04143 Sulphur transport FGM04_12800 PF01389 OmpA-like transmembrane domain FGM04_12800 PF00691 OmpA family FGM04_12805 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_12805 PF00585 C-terminal regulatory domain of Threonine dehydratase FGM04_12810 PF00920 Dehydratase family FGM04_12815 PF01063 Amino-transferase class IV FGM04_12825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FGM04_12825 PF00205 Thiamine pyrophosphate enzyme, central domain FGM04_12825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_12835 PF01078 Magnesium chelatase, subunit ChlI FGM04_12835 PF13335 Magnesium chelatase, subunit ChlI C-terminal FGM04_12840 PF01553 Acyltransferase FGM04_12845 PF01553 Acyltransferase FGM04_12850 PF04463 Protein of unknown function (DUF523) FGM04_12860 PF00857 Isochorismatase family FGM04_12865 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family FGM04_12865 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain FGM04_12875 PF01323 DSBA-like thioredoxin domain FGM04_12880 PF01636 Phosphotransferase enzyme family FGM04_12885 PF13746 4Fe-4S dicluster domain FGM04_12885 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase FGM04_12885 PF12801 4Fe-4S binding domain FGM04_12890 PF06288 Protein of unknown function (DUF1040) FGM04_12895 PF01590 GAF domain FGM04_12895 PF00563 EAL domain FGM04_12895 PF00990 Diguanylate cyclase, GGDEF domain FGM04_12895 PF00360 Phytochrome region FGM04_12900 PF13411 MerR HTH family regulatory protein FGM04_12905 PF00403 Heavy-metal-associated domain FGM04_12910 PF00156 Phosphoribosyl transferase domain FGM04_12915 PF01138 3' exoribonuclease family, domain 1 FGM04_12915 PF03725 3' exoribonuclease family, domain 2 FGM04_12920 PF08340 Domain of unknown function (DUF1732) FGM04_12920 PF03755 YicC-like family, N-terminal region FGM04_12965 PF13657 HipA N-terminal domain FGM04_12965 PF07804 HipA-like C-terminal domain FGM04_12975 PF02371 Transposase IS116/IS110/IS902 family FGM04_12975 PF01548 Transposase FGM04_12985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_12985 PF03466 LysR substrate binding domain FGM04_12990 PF00107 Zinc-binding dehydrogenase FGM04_12990 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_12995 PF00756 Putative esterase FGM04_13010 PF13593 SBF-like CPA transporter family (DUF4137) FGM04_13015 PF13520 Amino acid permease FGM04_13020 PF01588 Putative tRNA binding domain FGM04_13025 PF13520 Amino acid permease FGM04_13030 PF04074 YhcH/YjgK/YiaL FGM04_13035 PF16353 Domain of unknown function(DUF4981) FGM04_13035 PF00703 Glycosyl hydrolases family 2 FGM04_13035 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FGM04_13035 PF02929 Beta galactosidase small chain FGM04_13035 PF02837 Glycosyl hydrolases family 2, sugar binding domain FGM04_13040 PF00356 Bacterial regulatory proteins, lacI family FGM04_13075 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_13080 PF00476 DNA polymerase family A FGM04_13080 PF01612 3'-5' exonuclease FGM04_13080 PF01367 5'-3' exonuclease, C-terminal SAM fold FGM04_13080 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain FGM04_13095 PF06005 Cell division protein ZapB FGM04_13105 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_13105 PF06426 Serine acetyltransferase, N-terminal FGM04_13110 PF16916 Dimerisation domain of Zinc Transporter FGM04_13110 PF01545 Cation efflux family FGM04_13115 PF00486 Transcriptional regulatory protein, C terminal FGM04_13115 PF00072 Response regulator receiver domain FGM04_13120 PF00512 His Kinase A (phospho-acceptor) domain FGM04_13120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13120 PF00672 HAMP domain FGM04_13120 PF16527 Two-component sensor protein CpxA, periplasmic domain FGM04_13125 PF00588 SpoU rRNA Methylase family FGM04_13130 PF01554 MatE FGM04_13135 PF02630 SCO1/SenC FGM04_13145 PF01726 LexA DNA binding domain FGM04_13145 PF00717 Peptidase S24-like FGM04_13150 PF01553 Acyltransferase FGM04_13155 PF01040 UbiA prenyltransferase family FGM04_13160 PF04345 Chorismate lyase FGM04_13185 PF00107 Zinc-binding dehydrogenase FGM04_13185 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_13190 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) FGM04_13195 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FGM04_13200 PF00535 Glycosyl transferase family 2 FGM04_13205 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FGM04_13210 PF01467 Cytidylyltransferase-like FGM04_13215 PF04393 Protein of unknown function (DUF535) FGM04_13220 PF06827 Zinc finger found in FPG and IleRS FGM04_13220 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain FGM04_13220 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain FGM04_13230 PF00471 Ribosomal protein L33 FGM04_13235 PF00830 Ribosomal L28 family FGM04_13240 PF04002 RadC-like JAB domain FGM04_13245 PF02441 Flavoprotein FGM04_13245 PF04127 DNA / pantothenate metabolism flavoprotein FGM04_13250 PF00692 dUTPase FGM04_13255 PF00440 Bacterial regulatory proteins, tetR family FGM04_13260 PF00924 Mechanosensitive ion channel FGM04_13260 PF05552 Conserved TM helix FGM04_13265 PF00342 Phosphoglucose isomerase FGM04_13270 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain FGM04_13270 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain FGM04_13275 PF03466 LysR substrate binding domain FGM04_13275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_13290 PF00583 Acetyltransferase (GNAT) family FGM04_13290 PF13380 CoA binding domain FGM04_13290 PF13607 Succinyl-CoA ligase like flavodoxin domain FGM04_13320 PF13276 HTH-like domain FGM04_13320 PF13683 Integrase core domain FGM04_13325 PF12724 Flavodoxin domain FGM04_13330 PF02386 Cation transport protein FGM04_13335 PF01205 Uncharacterized protein family UPF0029 FGM04_13335 PF09186 Domain of unknown function (DUF1949) FGM04_13340 PF00557 Metallopeptidase family M24 FGM04_13345 PF00501 AMP-binding enzyme FGM04_13345 PF13193 AMP-binding enzyme C-terminal domain FGM04_13350 PF00378 Enoyl-CoA hydratase/isomerase FGM04_13350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain FGM04_13350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain FGM04_13355 PF02803 Thiolase, C-terminal domain FGM04_13355 PF00108 Thiolase, N-terminal domain FGM04_13360 PF00486 Transcriptional regulatory protein, C terminal FGM04_13360 PF00072 Response regulator receiver domain FGM04_13365 PF00672 HAMP domain FGM04_13365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13365 PF00512 His Kinase A (phospho-acceptor) domain FGM04_13370 PF01547 Bacterial extracellular solute-binding protein FGM04_13380 PF01206 Sulfurtransferase TusA FGM04_13385 PF01042 Endoribonuclease L-PSP FGM04_13390 PF13488 Glycine zipper FGM04_13390 PF00691 OmpA family FGM04_13395 PF03352 Methyladenine glycosylase FGM04_13400 PF02091 Glycyl-tRNA synthetase alpha subunit FGM04_13405 PF05746 DALR anticodon binding domain FGM04_13405 PF02092 Glycyl-tRNA synthetase beta subunit FGM04_13410 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FGM04_13420 PF00563 EAL domain FGM04_13420 PF00990 Diguanylate cyclase, GGDEF domain FGM04_13420 PF13426 PAS domain FGM04_13430 PF00672 HAMP domain FGM04_13430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_13435 PF07702 UTRA domain FGM04_13435 PF00392 Bacterial regulatory proteins, gntR family FGM04_13440 PF01609 Transposase DDE domain FGM04_13440 PF05598 Transposase domain (DUF772) FGM04_13460 PF02056 Family 4 glycosyl hydrolase FGM04_13460 PF11975 Family 4 glycosyl hydrolase C-terminal domain FGM04_13465 PF00356 Bacterial regulatory proteins, lacI family FGM04_13470 PF13458 Periplasmic binding protein FGM04_13475 PF02653 Branched-chain amino acid transport system / permease component FGM04_13480 PF11862 Domain of unknown function (DUF3382) FGM04_13480 PF02653 Branched-chain amino acid transport system / permease component FGM04_13485 PF12399 Branched-chain amino acid ATP-binding cassette transporter FGM04_13485 PF00005 ABC transporter FGM04_13490 PF00005 ABC transporter FGM04_13495 PF00581 Rhodanese-like domain FGM04_13500 PF01694 Rhomboid family FGM04_13500 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease FGM04_13505 PF12262 Bacterial virulence factor lipase N-terminal FGM04_13510 PF04380 Membrane fusogenic activity FGM04_13515 PF08447 PAS fold FGM04_13515 PF00990 Diguanylate cyclase, GGDEF domain FGM04_13515 PF08448 PAS fold FGM04_13515 PF00563 EAL domain FGM04_13520 PF00175 Oxidoreductase NAD-binding domain FGM04_13525 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase FGM04_13535 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FGM04_13535 PF07498 Rho termination factor, N-terminal domain FGM04_13535 PF07497 Rho termination factor, RNA-binding domain FGM04_13540 PF00085 Thioredoxin FGM04_13545 PF00271 Helicase conserved C-terminal domain FGM04_13545 PF00270 DEAD/DEAH box helicase FGM04_13550 PF02541 Ppx/GppA phosphatase family FGM04_13560 PF04445 Putative SAM-dependent methyltransferase FGM04_13565 PF03707 Bacterial signalling protein N terminal repeat FGM04_13565 PF00563 EAL domain FGM04_13565 PF00990 Diguanylate cyclase, GGDEF domain FGM04_13570 PF01432 Peptidase family M3 FGM04_13575 PF00704 Glycosyl hydrolases family 18 FGM04_13580 PF12561 ToxR activated gene A lipoprotein domain FGM04_13580 PF00041 Fibronectin type III domain FGM04_13585 PF00490 Delta-aminolevulinic acid dehydratase FGM04_13590 PF01026 TatD related DNase FGM04_13595 PF00902 Sec-independent protein translocase protein (TatC) FGM04_13600 PF02416 mttA/Hcf106 family FGM04_13605 PF02416 mttA/Hcf106 family FGM04_13610 PF03109 ABC1 family FGM04_13615 PF02036 SCP-2 sterol transfer family FGM04_13620 PF01209 ubiE/COQ5 methyltransferase family FGM04_13625 PF02537 CrcB-like protein, Camphor Resistance (CrcB) FGM04_13630 PF07969 Amidohydrolase family FGM04_13635 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin FGM04_13670 PF03544 Gram-negative bacterial TonB protein C-terminal FGM04_13675 PF02472 Biopolymer transport protein ExbD/TolR FGM04_13680 PF01618 MotA/TolQ/ExbB proton channel family FGM04_13685 PF01618 MotA/TolQ/ExbB proton channel family FGM04_13695 PF00196 Bacterial regulatory proteins, luxR family FGM04_13695 PF03472 Autoinducer binding domain FGM04_13700 PF01380 SIS domain FGM04_13705 PF08220 DeoR-like helix-turn-helix domain FGM04_13705 PF00455 DeoR C terminal sensor domain FGM04_13710 PF00072 Response regulator receiver domain FGM04_13710 PF00486 Transcriptional regulatory protein, C terminal FGM04_13715 PF00512 His Kinase A (phospho-acceptor) domain FGM04_13715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13715 PF00672 HAMP domain FGM04_13720 PF00905 Penicillin binding protein transpeptidase domain FGM04_13730 PF06123 Inner membrane protein CreD FGM04_13735 PF12804 MobA-like NTP transferase domain FGM04_13735 PF14602 Hexapeptide repeat of succinyl-transferase FGM04_13735 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_13740 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain FGM04_13740 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain FGM04_13745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FGM04_13745 PF02874 ATP synthase alpha/beta family, beta-barrel domain FGM04_13750 PF00231 ATP synthase FGM04_13755 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain FGM04_13755 PF00306 ATP synthase alpha/beta chain, C terminal domain FGM04_13755 PF02874 ATP synthase alpha/beta family, beta-barrel domain FGM04_13760 PF00213 ATP synthase delta (OSCP) subunit FGM04_13765 PF00430 ATP synthase B/B' CF(0) FGM04_13770 PF00137 ATP synthase subunit C FGM04_13775 PF00119 ATP synthase A chain FGM04_13785 PF02195 ParB-like nuclease domain FGM04_13785 PF17762 HTH domain found in ParB protein FGM04_13790 PF13614 AAA domain FGM04_13795 PF02527 rRNA small subunit methyltransferase G FGM04_13800 PF13932 GidA associated domain FGM04_13800 PF01134 Glucose inhibited division protein A FGM04_13805 PF00258 Flavodoxin FGM04_13810 PF00593 TonB dependent receptor FGM04_13810 PF07715 TonB-dependent Receptor Plug Domain FGM04_13815 PF00005 ABC transporter FGM04_13820 PF00005 ABC transporter FGM04_13825 PF01497 Periplasmic binding protein FGM04_13830 PF01032 FecCD transport family FGM04_13835 PF12631 MnmE helical domain FGM04_13835 PF10396 GTP-binding protein TrmE N-terminus FGM04_13835 PF01926 50S ribosome-binding GTPase FGM04_13840 PF14849 YidC periplasmic domain FGM04_13840 PF02096 60Kd inner membrane protein FGM04_13845 PF01809 Putative membrane protein insertion efficiency factor FGM04_13850 PF00825 Ribonuclease P FGM04_13855 PF00468 Ribosomal protein L34 FGM04_13865 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_13870 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_13875 PF00308 Bacterial dnaA protein FGM04_13875 PF11638 DnaA N-terminal domain FGM04_13875 PF08299 Bacterial dnaA protein helix-turn-helix FGM04_13880 PF02768 DNA polymerase III beta subunit, C-terminal domain FGM04_13880 PF00712 DNA polymerase III beta subunit, N-terminal domain FGM04_13880 PF02767 DNA polymerase III beta subunit, central domain FGM04_13885 PF02463 RecF/RecN/SMC N terminal domain FGM04_13890 PF01751 Toprim domain FGM04_13890 PF00204 DNA gyrase B FGM04_13890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13890 PF00986 DNA gyrase B subunit, carboxyl terminus FGM04_13890 PF18053 DNA gyrase B subunit insert domain FGM04_13900 PF08279 HTH domain FGM04_13900 PF13280 WYL domain FGM04_13905 PF12833 Helix-turn-helix domain FGM04_13905 PF01965 DJ-1/PfpI family FGM04_13910 PF12706 Beta-lactamase superfamily domain FGM04_13915 PF00011 Hsp20/alpha crystallin family FGM04_13920 PF00011 Hsp20/alpha crystallin family FGM04_13925 PF00155 Aminotransferase class I and II FGM04_13940 PF07690 Major Facilitator Superfamily FGM04_13945 PF00486 Transcriptional regulatory protein, C terminal FGM04_13945 PF00072 Response regulator receiver domain FGM04_13950 PF02702 Osmosensitive K+ channel His kinase sensor domain FGM04_13950 PF00512 His Kinase A (phospho-acceptor) domain FGM04_13950 PF13493 Domain of unknown function (DUF4118) FGM04_13950 PF13492 GAF domain FGM04_13950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13955 PF02669 K+-transporting ATPase, c chain FGM04_13965 PF03814 Potassium-transporting ATPase A subunit FGM04_13975 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_13975 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FGM04_13980 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_13980 PF00512 His Kinase A (phospho-acceptor) domain FGM04_13980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_13985 PF00873 AcrB/AcrD/AcrF family FGM04_13990 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_13995 PF00440 Bacterial regulatory proteins, tetR family FGM04_14030 PF12146 Serine aminopeptidase, S33 FGM04_14035 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_14040 PF00588 SpoU rRNA Methylase family FGM04_14040 PF12105 SpoU, rRNA methylase, C-terminal FGM04_14045 PF13291 ACT domain FGM04_14045 PF04607 Region found in RelA / SpoT proteins FGM04_14045 PF02824 TGS domain FGM04_14050 PF01192 RNA polymerase Rpb6 FGM04_14055 PF00625 Guanylate kinase FGM04_14065 PF01075 Glycosyltransferase family 9 (heptosyltransferase) FGM04_14080 PF00892 EamA-like transporter family FGM04_14100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_14100 PF03466 LysR substrate binding domain FGM04_14110 PF00582 Universal stress protein family FGM04_14115 PF12241 Trans-2-enoyl-CoA reductase catalytic region FGM04_14115 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FGM04_14115 PF07055 Enoyl reductase FAD binding domain FGM04_14120 PF00210 Ferritin-like domain FGM04_14130 PF07694 5TMR of 5TMR-LYT FGM04_14130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_14130 PF06580 Histidine kinase FGM04_14135 PF04397 LytTr DNA-binding domain FGM04_14135 PF00072 Response regulator receiver domain FGM04_14140 PF07690 Major Facilitator Superfamily FGM04_14145 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain FGM04_14145 PF02222 ATP-grasp domain FGM04_14150 PF00731 AIR carboxylase FGM04_14165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_14165 PF03466 LysR substrate binding domain FGM04_14170 PF07715 TonB-dependent Receptor Plug Domain FGM04_14170 PF00593 TonB dependent receptor FGM04_14175 PF01177 Asp/Glu/Hydantoin racemase FGM04_14210 PF00899 ThiF family FGM04_14215 PF02657 Fe-S metabolism associated domain FGM04_14220 PF00266 Aminotransferase class-V FGM04_14225 PF13361 UvrD-like helicase C-terminal domain FGM04_14225 PF00580 UvrD/REP helicase N-terminal domain FGM04_14230 PF00563 EAL domain FGM04_14230 PF00990 Diguanylate cyclase, GGDEF domain FGM04_14230 PF03707 Bacterial signalling protein N terminal repeat FGM04_14235 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FGM04_14240 PF00107 Zinc-binding dehydrogenase FGM04_14240 PF08240 Alcohol dehydrogenase GroES-like domain FGM04_14245 PF00155 Aminotransferase class I and II FGM04_14250 PF00440 Bacterial regulatory proteins, tetR family FGM04_14250 PF08360 QacR-like protein, C-terminal region FGM04_14255 PF01370 NAD dependent epimerase/dehydratase family FGM04_14280 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_14305 PF12833 Helix-turn-helix domain FGM04_14305 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term FGM04_14310 PF01810 LysE type translocator FGM04_14340 PF14001 YdfZ protein FGM04_14355 PF13361 UvrD-like helicase C-terminal domain FGM04_14355 PF00580 UvrD/REP helicase N-terminal domain FGM04_14395 PF02872 5'-nucleotidase, C-terminal domain FGM04_14395 PF00149 Calcineurin-like phosphoesterase FGM04_14405 PF00571 CBS domain FGM04_14405 PF03448 MgtE intracellular N domain FGM04_14405 PF01769 Divalent cation transporter FGM04_14410 PF10414 Sirohaem synthase dimerisation region FGM04_14410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FGM04_14410 PF14824 Sirohaem biosynthesis protein central FGM04_14415 PF01226 Formate/nitrite transporter FGM04_14420 PF13806 Rieske-like [2Fe-2S] domain FGM04_14425 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FGM04_14425 PF04324 BFD-like [2Fe-2S] binding domain FGM04_14425 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_14425 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FGM04_14425 PF18267 Rubredoxin NAD+ reductase C-terminal domain FGM04_14440 PF00005 ABC transporter FGM04_14445 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_14455 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_14455 PF07724 AAA domain (Cdc48 subfamily) FGM04_14455 PF10431 C-terminal, D2-small domain, of ClpB protein FGM04_14460 PF00227 Proteasome subunit FGM04_14470 PF05746 DALR anticodon binding domain FGM04_14470 PF03485 Arginyl tRNA synthetase N terminal domain FGM04_14470 PF00750 tRNA synthetases class I (R) FGM04_14480 PF04542 Sigma-70 region 2 FGM04_14480 PF04545 Sigma-70, region 4 FGM04_14490 PF02673 Bacitracin resistance protein BacA FGM04_14495 PF01263 Aldose 1-epimerase FGM04_14500 PF08544 GHMP kinases C terminal FGM04_14500 PF00288 GHMP kinases N terminal domain FGM04_14500 PF10509 Galactokinase galactose-binding signature FGM04_14505 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain FGM04_14505 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain FGM04_14510 PF16363 GDP-mannose 4,6 dehydratase FGM04_14515 PF00356 Bacterial regulatory proteins, lacI family FGM04_14520 PF02836 Glycosyl hydrolases family 2, TIM barrel domain FGM04_14520 PF02837 Glycosyl hydrolases family 2, sugar binding domain FGM04_14520 PF00703 Glycosyl hydrolases family 2 FGM04_14520 PF02929 Beta galactosidase small chain FGM04_14520 PF16353 Domain of unknown function(DUF4981) FGM04_14525 PF13407 Periplasmic binding protein domain FGM04_14530 PF00005 ABC transporter FGM04_14535 PF02653 Branched-chain amino acid transport system / permease component FGM04_14540 PF02743 Cache domain FGM04_14540 PF00672 HAMP domain FGM04_14540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_14545 PF05958 tRNA (Uracil-5-)-methyltransferase FGM04_14560 PF02903 Alpha amylase, N-terminal ig-like domain FGM04_14560 PF00128 Alpha amylase, catalytic domain FGM04_14575 PF00012 Hsp70 protein FGM04_14580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_14580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FGM04_14585 PF05981 CreA protein FGM04_14600 PF01258 Prokaryotic dksA/traR C4-type zinc finger FGM04_14605 PF00120 Glutamine synthetase, catalytic domain FGM04_14610 PF00202 Aminotransferase class-III FGM04_14615 PF13416 Bacterial extracellular solute-binding protein FGM04_14620 PF13416 Bacterial extracellular solute-binding protein FGM04_14625 PF00005 ABC transporter FGM04_14625 PF08402 TOBE domain FGM04_14630 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_14635 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_14640 PF03473 MOSC domain FGM04_14640 PF03475 3-alpha domain FGM04_14655 PF03061 Thioesterase superfamily FGM04_14660 PF00270 DEAD/DEAH box helicase FGM04_14660 PF00570 HRDC domain FGM04_14660 PF00271 Helicase conserved C-terminal domain FGM04_14660 PF09382 RQC domain FGM04_14660 PF16124 RecQ zinc-binding FGM04_14665 PF00034 Cytochrome c FGM04_14670 PF02696 Uncharacterized ACR, YdiU/UPF0061 family FGM04_14680 PF02592 Putative vitamin uptake transporter FGM04_14685 PF03737 Aldolase/RraA FGM04_14690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_14690 PF00672 HAMP domain FGM04_14700 PF01197 Ribosomal protein L31 FGM04_14705 PF18319 PriA DNA helicase Cys-rich region (CRR) domain FGM04_14705 PF18074 Primosomal protein N C-terminal domain FGM04_14705 PF17764 3′ DNA-binding domain (3′BD) FGM04_14705 PF00271 Helicase conserved C-terminal domain FGM04_14705 PF00270 DEAD/DEAH box helicase FGM04_14715 PF13460 NAD(P)H-binding FGM04_14715 PF11066 Protein of unknown function (DUF2867) FGM04_14720 PF03222 Tryptophan/tyrosine permease family FGM04_14725 PF03949 Malic enzyme, NAD binding domain FGM04_14725 PF00390 Malic enzyme, N-terminal domain FGM04_14730 PF03631 Virulence factor BrkB FGM04_14735 PF02580 D-Tyr-tRNA(Tyr) deacylase FGM04_14740 PF17284 Spermidine synthase tetramerisation domain FGM04_14745 PF00583 Acetyltransferase (GNAT) family FGM04_14745 PF09500 Putative thioesterase (yiiD_Cterm) FGM04_14755 PF00271 Helicase conserved C-terminal domain FGM04_14755 PF00270 DEAD/DEAH box helicase FGM04_14755 PF17191 RecG wedge domain FGM04_14760 PF13091 PLD-like domain FGM04_14770 PF02447 GntP family permease FGM04_14775 PF01202 Shikimate kinase FGM04_14780 PF00920 Dehydratase family FGM04_14785 PF01081 KDPG and KHG aldolase FGM04_14790 PF00356 Bacterial regulatory proteins, lacI family FGM04_14790 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FGM04_14800 PF01551 Peptidase family M23 FGM04_14805 PF01676 Metalloenzyme superfamily FGM04_14805 PF06415 BPG-independent PGAM N-terminus (iPGM_N) FGM04_14810 PF00581 Rhodanese-like domain FGM04_14815 PF02556 Preprotein translocase subunit SecB FGM04_14820 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus FGM04_14820 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus FGM04_14825 PF01521 Iron-sulphur cluster biosynthesis FGM04_14825 PF01106 NifU-like domain FGM04_14830 PF00156 Phosphoribosyl transferase domain FGM04_14835 PF00561 alpha/beta hydrolase fold FGM04_14855 PF00575 S1 RNA binding domain FGM04_14855 PF09371 Tex-like protein N-terminal domain FGM04_14855 PF16921 Tex protein YqgF-like domain FGM04_14855 PF17674 HHH domain FGM04_14860 PF01272 Transcription elongation factor, GreA/GreB, C-term FGM04_14860 PF03449 Transcription elongation factor, N-terminal FGM04_14865 PF00072 Response regulator receiver domain FGM04_14865 PF00486 Transcriptional regulatory protein, C terminal FGM04_14870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_14870 PF00512 His Kinase A (phospho-acceptor) domain FGM04_14870 PF00672 HAMP domain FGM04_14880 PF00338 Ribosomal protein S10p/S20e FGM04_14885 PF00297 Ribosomal protein L3 FGM04_14890 PF00573 Ribosomal protein L4/L1 family FGM04_14895 PF00276 Ribosomal protein L23 FGM04_14900 PF03947 Ribosomal Proteins L2, C-terminal domain FGM04_14900 PF00181 Ribosomal Proteins L2, RNA binding domain FGM04_14905 PF00203 Ribosomal protein S19 FGM04_14910 PF00237 Ribosomal protein L22p/L17e FGM04_14915 PF07650 KH domain FGM04_14915 PF00189 Ribosomal protein S3, C-terminal domain FGM04_14920 PF00252 Ribosomal protein L16p/L10e FGM04_14925 PF00831 Ribosomal L29 protein FGM04_14930 PF00366 Ribosomal protein S17 FGM04_14935 PF00238 Ribosomal protein L14p/L23e FGM04_14940 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 FGM04_14940 PF00467 KOW motif FGM04_14945 PF00673 ribosomal L5P family C-terminus FGM04_14945 PF00281 Ribosomal protein L5 FGM04_14950 PF00253 Ribosomal protein S14p/S29e FGM04_14955 PF00410 Ribosomal protein S8 FGM04_14960 PF00347 Ribosomal protein L6 FGM04_14965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast FGM04_14970 PF03719 Ribosomal protein S5, C-terminal domain FGM04_14970 PF00333 Ribosomal protein S5, N-terminal domain FGM04_14975 PF00327 Ribosomal protein L30p/L7e FGM04_14980 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A FGM04_14985 PF00344 SecY translocase FGM04_14990 PF00444 Ribosomal protein L36 FGM04_14995 PF00416 Ribosomal protein S13/S18 FGM04_15000 PF00411 Ribosomal protein S11 FGM04_15005 PF01479 S4 domain FGM04_15005 PF00163 Ribosomal protein S4/S9 N-terminal domain FGM04_15010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain FGM04_15010 PF01000 RNA polymerase Rpb3/RpoA insert domain FGM04_15010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain FGM04_15015 PF01196 Ribosomal protein L17 FGM04_15055 PF00593 TonB dependent receptor FGM04_15055 PF07715 TonB-dependent Receptor Plug Domain FGM04_15060 PF17151 Periplasmic sensor domain FGM04_15060 PF00990 Diguanylate cyclase, GGDEF domain FGM04_15065 PF00512 His Kinase A (phospho-acceptor) domain FGM04_15065 PF00672 HAMP domain FGM04_15065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_15070 PF00486 Transcriptional regulatory protein, C terminal FGM04_15070 PF00072 Response regulator receiver domain FGM04_15080 PF00672 HAMP domain FGM04_15080 PF12729 Four helix bundle sensory module for signal transduction FGM04_15080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_15090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_15090 PF03466 LysR substrate binding domain FGM04_15100 PF17954 Quercetinase C-terminal cupin domain FGM04_15100 PF02678 Pirin FGM04_15105 PF07681 DoxX FGM04_15110 PF17946 RecC C-terminal domain FGM04_15115 PF13361 UvrD-like helicase C-terminal domain FGM04_15115 PF12705 PD-(D/E)XK nuclease superfamily FGM04_15115 PF00580 UvrD/REP helicase N-terminal domain FGM04_15120 PF13538 UvrD-like helicase C-terminal domain FGM04_15135 PF00990 Diguanylate cyclase, GGDEF domain FGM04_15135 PF08448 PAS fold FGM04_15155 PF00392 Bacterial regulatory proteins, gntR family FGM04_15155 PF07702 UTRA domain FGM04_15170 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_15180 PF00005 ABC transporter FGM04_15180 PF08402 TOBE domain FGM04_15190 PF00990 Diguanylate cyclase, GGDEF domain FGM04_15210 PF01053 Cys/Met metabolism PLP-dependent enzyme FGM04_15220 PF12793 Sugar transport-related sRNA regulator N-term FGM04_15220 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_15225 PF00141 Peroxidase FGM04_15240 PF03280 Proteobacterial lipase chaperone protein FGM04_15245 PF00561 alpha/beta hydrolase fold FGM04_15250 PF00579 tRNA synthetases class I (W and Y) FGM04_15250 PF01479 S4 domain FGM04_15255 PF00196 Bacterial regulatory proteins, luxR family FGM04_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 FGM04_15275 PF00199 Catalase FGM04_15275 PF06628 Catalase-related immune-responsive FGM04_15280 PF00583 Acetyltransferase (GNAT) family FGM04_15300 PF10458 Valyl tRNA synthetase tRNA binding arm FGM04_15300 PF00133 tRNA synthetases class I (I, L, M and V) FGM04_15300 PF08264 Anticodon-binding domain of tRNA FGM04_15305 PF04364 DNA polymerase III chi subunit, HolC FGM04_15310 PF02789 Cytosol aminopeptidase family, N-terminal domain FGM04_15310 PF00883 Cytosol aminopeptidase family, catalytic domain FGM04_15315 PF03739 Lipopolysaccharide export system permease LptF/LptG FGM04_15320 PF03739 Lipopolysaccharide export system permease LptF/LptG FGM04_15335 PF13356 Arm DNA-binding domain FGM04_15335 PF00589 Phage integrase family FGM04_15390 PF00768 D-alanyl-D-alanine carboxypeptidase FGM04_15395 PF13520 Amino acid permease FGM04_15415 PF13609 Gram-negative porin FGM04_15420 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded FGM04_15435 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase FGM04_15440 PF02602 Uroporphyrinogen-III synthase HemD FGM04_15445 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain FGM04_15445 PF03900 Porphobilinogen deaminase, C-terminal domain FGM04_15450 PF12633 Adenylate cyclase NT domain FGM04_15450 PF01295 Adenylate cyclase, class-I FGM04_15455 PF02230 Phospholipase/Carboxylesterase FGM04_15460 PF01491 Frataxin-like domain FGM04_15470 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain FGM04_15470 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FGM04_15475 PF01678 Diaminopimelate epimerase FGM04_15485 PF00589 Phage integrase family FGM04_15485 PF02899 Phage integrase, N-terminal SAM-like domain FGM04_15490 PF13419 Haloacid dehalogenase-like hydrolase FGM04_15500 PF13545 Crp-like helix-turn-helix domain FGM04_15500 PF00027 Cyclic nucleotide-binding domain FGM04_15510 PF07722 Peptidase C26 FGM04_15515 PF04751 Protein of unknown function (DUF615) FGM04_15535 PF00075 RNase H FGM04_15575 PF00239 Resolvase, N terminal domain FGM04_15575 PF02796 Helix-turn-helix domain of resolvase FGM04_15610 PF01523 Putative modulator of DNA gyrase FGM04_15620 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) FGM04_15625 PF01722 BolA-like protein FGM04_15635 PF05494 MlaC protein FGM04_15640 PF02470 MlaD protein FGM04_15645 PF02405 Permease MlaE FGM04_15650 PF00005 ABC transporter FGM04_15655 PF01380 SIS domain FGM04_15655 PF00571 CBS domain FGM04_15665 PF06835 Lipopolysaccharide-assembly, LptC-related FGM04_15670 PF03968 OstA-like protein FGM04_15675 PF00005 ABC transporter FGM04_15675 PF12399 Branched-chain amino acid ATP-binding cassette transporter FGM04_15680 PF04963 Sigma-54 factor, core binding domain FGM04_15680 PF00309 Sigma-54 factor, Activator interacting domain (AID) FGM04_15680 PF04552 Sigma-54, DNA binding domain FGM04_15685 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein FGM04_15690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_15695 PF03668 P-loop ATPase protein family FGM04_15700 PF00381 PTS HPr component phosphorylation site FGM04_15705 PF05043 Mga helix-turn-helix domain FGM04_15705 PF00874 PRD domain FGM04_15705 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_15705 PF08279 HTH domain FGM04_15710 PF07071 KDGP aldolase FGM04_15715 PF03841 L-seryl-tRNA selenium transferase FGM04_15720 PF01979 Amidohydrolase family FGM04_15750 PF13180 PDZ domain FGM04_15755 PF13180 PDZ domain FGM04_15755 PF00595 PDZ domain FGM04_15765 PF03969 AFG1-like ATPase FGM04_15770 PF00572 Ribosomal protein L13 FGM04_15775 PF00380 Ribosomal protein S9/S16 FGM04_15780 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal FGM04_15780 PF00355 Rieske [2Fe-2S] domain FGM04_15785 PF00033 Cytochrome b/b6/petB FGM04_15785 PF00032 Cytochrome b(C-terminal)/b6/petD FGM04_15790 PF02167 Cytochrome C1 family FGM04_15795 PF00043 Glutathione S-transferase, C-terminal domain FGM04_15795 PF02798 Glutathione S-transferase, N-terminal domain FGM04_15800 PF04386 Stringent starvation protein B FGM04_15805 PF04972 BON domain FGM04_15810 PF13580 SIS domain FGM04_15815 PF02021 Uncharacterised protein family UPF0102 FGM04_15820 PF04348 LppC putative lipoprotein FGM04_15825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FGM04_15835 PF02381 MraZ protein, putative antitoxin-like FGM04_15840 PF01795 MraW methylase family FGM04_15845 PF04999 Cell division protein FtsL FGM04_15850 PF03717 Penicillin-binding Protein dimerisation domain FGM04_15850 PF00905 Penicillin binding protein transpeptidase domain FGM04_15855 PF02875 Mur ligase family, glutamate ligase domain FGM04_15855 PF08245 Mur ligase middle domain FGM04_15855 PF01225 Mur ligase family, catalytic domain FGM04_15860 PF01225 Mur ligase family, catalytic domain FGM04_15860 PF08245 Mur ligase middle domain FGM04_15860 PF02875 Mur ligase family, glutamate ligase domain FGM04_15865 PF00953 Glycosyl transferase family 4 FGM04_15865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 FGM04_15870 PF08245 Mur ligase middle domain FGM04_15870 PF02875 Mur ligase family, glutamate ligase domain FGM04_15875 PF01098 Cell cycle protein FGM04_15880 PF04101 Glycosyltransferase family 28 C-terminal domain FGM04_15880 PF03033 Glycosyltransferase family 28 N-terminal domain FGM04_15885 PF02875 Mur ligase family, glutamate ligase domain FGM04_15885 PF08245 Mur ligase middle domain FGM04_15885 PF01225 Mur ligase family, catalytic domain FGM04_15890 PF08478 POTRA domain, FtsQ-type FGM04_15890 PF03799 Cell division protein FtsQ FGM04_15895 PF02491 SHS2 domain inserted in FTSA FGM04_15900 PF00091 Tubulin/FtsZ family, GTPase domain FGM04_15900 PF12327 FtsZ family, C-terminal domain FGM04_15905 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase FGM04_15915 PF02810 SEC-C motif FGM04_15915 PF07516 SecA Wing and Scaffold domain FGM04_15915 PF07517 SecA DEAD-like domain FGM04_15915 PF01043 SecA preprotein cross-linking domain FGM04_15925 PF00293 NUDIX domain FGM04_15930 PF03884 DNA gyrase inhibitor YacG FGM04_15935 PF07072 Cell division protein FGM04_15940 PF01121 Dephospho-CoA kinase FGM04_15945 PF06750 Bacterial Peptidase A24 N-terminal domain FGM04_15945 PF01478 Type IV leader peptidase family FGM04_15950 PF00482 Type II secretion system (T2SS), protein F FGM04_15955 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain FGM04_15955 PF00437 Type II/IV secretion system protein FGM04_15960 PF07963 Prokaryotic N-terminal methylation motif FGM04_15970 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain FGM04_15970 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain FGM04_15980 PF01510 N-acetylmuramoyl-L-alanine amidase FGM04_15985 PF07729 FCD domain FGM04_15985 PF00392 Bacterial regulatory proteins, gntR family FGM04_15990 PF17831 Pyruvate dehydrogenase E1 component middle domain FGM04_15990 PF00456 Transketolase, thiamine diphosphate binding domain FGM04_15995 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) FGM04_15995 PF00364 Biotin-requiring enzyme FGM04_15995 PF02817 e3 binding domain FGM04_16000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain FGM04_16000 PF07992 Pyridine nucleotide-disulphide oxidoreductase FGM04_16005 PF03707 Bacterial signalling protein N terminal repeat FGM04_16005 PF00990 Diguanylate cyclase, GGDEF domain FGM04_16005 PF00563 EAL domain FGM04_16010 PF12729 Four helix bundle sensory module for signal transduction FGM04_16010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_16010 PF00672 HAMP domain FGM04_16015 PF01734 Patatin-like phospholipase FGM04_16020 PF11791 Aconitate B N-terminal domain FGM04_16020 PF00330 Aconitase family (aconitate hydratase) FGM04_16020 PF06434 Aconitate hydratase 2 N-terminus FGM04_16025 PF00563 EAL domain FGM04_16025 PF12792 CSS motif domain associated with EAL FGM04_16035 PF07683 Cobalamin synthesis protein cobW C-terminal domain FGM04_16035 PF02492 CobW/HypB/UreG, nucleotide-binding domain FGM04_16055 PF07690 Major Facilitator Superfamily FGM04_16065 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FGM04_16070 PF02152 Dihydroneopterin aldolase FGM04_16075 PF02660 Glycerol-3-phosphate acyltransferase FGM04_16120 PF00206 Lyase FGM04_16120 PF14698 Argininosuccinate lyase C-terminal FGM04_16125 PF00764 Arginosuccinate synthase FGM04_16130 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain FGM04_16130 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain FGM04_16135 PF00696 Amino acid kinase family FGM04_16140 PF02774 Semialdehyde dehydrogenase, dimerisation domain FGM04_16140 PF01118 Semialdehyde dehydrogenase, NAD binding domain FGM04_16145 PF01546 Peptidase family M20/M25/M40 FGM04_16145 PF07687 Peptidase dimerisation domain FGM04_16150 PF00311 Phosphoenolpyruvate carboxylase FGM04_16155 PF00132 Bacterial transferase hexapeptide (six repeats) FGM04_16165 PF17151 Periplasmic sensor domain FGM04_16165 PF00990 Diguanylate cyclase, GGDEF domain FGM04_16175 PF06055 Exopolysaccharide synthesis, ExoD FGM04_16185 PF00990 Diguanylate cyclase, GGDEF domain FGM04_16190 PF00909 Ammonium Transporter Family FGM04_16195 PF05433 Glycine zipper 2TM domain FGM04_16200 PF00583 Acetyltransferase (GNAT) family FGM04_16205 PF11756 Nitrous oxide-stimulated promoter FGM04_16210 PF01321 Creatinase/Prolidase N-terminal domain FGM04_16210 PF00557 Metallopeptidase family M24 FGM04_16215 PF00392 Bacterial regulatory proteins, gntR family FGM04_16225 PF01430 Hsp33 protein FGM04_16230 PF01479 S4 domain FGM04_16240 PF01569 PAP2 superfamily FGM04_16245 PF01594 AI-2E family transporter FGM04_16270 PF00158 Sigma-54 interaction domain FGM04_16270 PF02954 Bacterial regulatory protein, Fis family FGM04_16270 PF00989 PAS fold FGM04_16275 PF00465 Iron-containing alcohol dehydrogenase FGM04_16280 PF00381 PTS HPr component phosphorylation site FGM04_16280 PF03610 PTS system fructose IIA component FGM04_16280 PF05524 PEP-utilising enzyme, N-terminal FGM04_16280 PF00391 PEP-utilising enzyme, mobile domain FGM04_16285 PF02734 DAK2 domain FGM04_16290 PF02733 Dak1 domain FGM04_16295 PF00860 Permease family FGM04_16300 PF00313 'Cold-shock' DNA-binding domain FGM04_16310 PF01545 Cation efflux family FGM04_16310 PF16916 Dimerisation domain of Zinc Transporter FGM04_16330 PF01219 Prokaryotic diacylglycerol kinase FGM04_16335 PF08019 Phosphoethanolamine transferase EptA/EptB FGM04_16335 PF00884 Sulfatase FGM04_16340 PF00884 Sulfatase FGM04_16340 PF08019 Phosphoethanolamine transferase EptA/EptB FGM04_16345 PF00892 EamA-like transporter family FGM04_16350 PF05598 Transposase domain (DUF772) FGM04_16350 PF01609 Transposase DDE domain FGM04_16370 PF00436 Single-strand binding protein family FGM04_16375 PF00196 Bacterial regulatory proteins, luxR family FGM04_16380 PF10627 Curli assembly protein CsgE FGM04_16390 PF03783 Curli production assembly/transport component CsgG FGM04_16410 PF00005 ABC transporter FGM04_16410 PF17755 UvrA DNA-binding domain FGM04_16410 PF17760 UvrA interaction domain FGM04_16415 PF00990 Diguanylate cyclase, GGDEF domain FGM04_16415 PF17158 Membrane-associated sensor, integral membrane domain FGM04_16420 PF03922 OmpW family FGM04_16425 PF00672 HAMP domain FGM04_16425 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_16440 PF02219 Methylenetetrahydrofolate reductase FGM04_16450 PF03594 Benzoate membrane transport protein FGM04_16455 PF07883 Cupin domain FGM04_16455 PF01381 Helix-turn-helix FGM04_16495 PF04363 Protein of unknown function (DUF496) FGM04_16515 PF02464 Competence-damaged protein FGM04_16515 PF00994 Probable molybdopterin binding domain FGM04_16525 PF04204 Homoserine O-succinyltransferase FGM04_16535 PF01037 Lrp/AsnC ligand binding domain FGM04_16540 PF00884 Sulfatase FGM04_16560 PF16657 Maltogenic Amylase, C-terminal domain FGM04_16560 PF02903 Alpha amylase, N-terminal ig-like domain FGM04_16560 PF00128 Alpha amylase, catalytic domain FGM04_16580 PF00106 short chain dehydrogenase FGM04_16585 PF03577 Peptidase family C69 FGM04_16595 PF00465 Iron-containing alcohol dehydrogenase FGM04_16600 PF02142 MGS-like domain FGM04_16610 PF00210 Ferritin-like domain FGM04_16625 PF17176 tRNA-binding domain FGM04_16625 PF05127 Helicase FGM04_16625 PF13718 GNAT acetyltransferase 2 FGM04_16625 PF08351 Domain of unknown function (DUF1726) FGM04_16630 PF00106 short chain dehydrogenase FGM04_16635 PF01584 CheW-like domain FGM04_16635 PF00072 Response regulator receiver domain FGM04_16645 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain FGM04_16645 PF02777 Iron/manganese superoxide dismutases, C-terminal domain FGM04_16650 PF02698 DUF218 domain FGM04_16655 PF01752 Collagenase FGM04_16655 PF08453 Peptidase family M9 N-terminal FGM04_16665 PF01609 Transposase DDE domain FGM04_16665 PF05598 Transposase domain (DUF772) FGM04_16670 PF00419 Fimbrial protein FGM04_16680 PF13953 PapC C-terminal domain FGM04_16680 PF00577 Outer membrane usher protein FGM04_16680 PF13954 PapC N-terminal domain FGM04_16685 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain FGM04_16685 PF02753 Pili assembly chaperone PapD, C-terminal domain FGM04_16690 PF00419 Fimbrial protein FGM04_16695 PF00419 Fimbrial protein FGM04_16705 PF13193 AMP-binding enzyme C-terminal domain FGM04_16705 PF00501 AMP-binding enzyme FGM04_16710 PF13378 Enolase C-terminal domain-like FGM04_16715 PF00378 Enoyl-CoA hydratase/isomerase FGM04_16720 PF12697 Alpha/beta hydrolase family FGM04_16725 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_16725 PF16582 Middle domain of thiamine pyrophosphate FGM04_16725 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain FGM04_16730 PF00425 chorismate binding enzyme FGM04_16735 PF01040 UbiA prenyltransferase family FGM04_16755 PF00270 DEAD/DEAH box helicase FGM04_16755 PF00271 Helicase conserved C-terminal domain FGM04_16755 PF03880 DbpA RNA binding domain FGM04_16760 PF01773 Na+ dependent nucleoside transporter N-terminus FGM04_16760 PF07670 Nucleoside recognition FGM04_16760 PF07662 Na+ dependent nucleoside transporter C-terminus FGM04_16765 PF04307 LexA-binding, inner membrane-associated putative hydrolase FGM04_16770 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 FGM04_16775 PF01544 CorA-like Mg2+ transporter protein FGM04_16790 PF00226 DnaJ domain FGM04_16790 PF01556 DnaJ C terminal domain FGM04_16790 PF00684 DnaJ central domain FGM04_16795 PF00999 Sodium/hydrogen exchanger family FGM04_16795 PF02080 TrkA-C domain FGM04_16795 PF03471 Transporter associated domain FGM04_16800 PF05068 Mannitol repressor FGM04_16805 PF01232 Mannitol dehydrogenase Rossmann domain FGM04_16805 PF08125 Mannitol dehydrogenase C-terminal domain FGM04_16810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_16810 PF02378 Phosphotransferase system, EIIC FGM04_16810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_16815 PF03279 Bacterial lipid A biosynthesis acyltransferase FGM04_16820 PF00294 pfkB family carbohydrate kinase FGM04_16820 PF01467 Cytidylyltransferase-like FGM04_16825 PF02321 Outer membrane efflux protein FGM04_16830 PF00293 NUDIX domain FGM04_16835 PF06853 Protein of unknown function (DUF1249) FGM04_16840 PF00149 Calcineurin-like phosphoesterase FGM04_16845 PF05728 Uncharacterised protein family (UPF0227) FGM04_16850 PF01751 Toprim domain FGM04_16850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_16850 PF00986 DNA gyrase B subunit, carboxyl terminus FGM04_16850 PF00204 DNA gyrase B FGM04_16855 PF00521 DNA gyrase/topoisomerase IV, subunit A FGM04_16855 PF03989 DNA gyrase C-terminal domain, beta-propeller FGM04_16865 PF00854 POT family FGM04_16885 PF01556 DnaJ C terminal domain FGM04_16885 PF00226 DnaJ domain FGM04_16885 PF00684 DnaJ central domain FGM04_16900 PF03466 LysR substrate binding domain FGM04_16900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_16905 PF00578 AhpC/TSA family FGM04_16925 PF01553 Acyltransferase FGM04_16930 PF04012 PspA/IM30 family FGM04_16945 PF01541 GIY-YIG catalytic domain FGM04_16955 PF00892 EamA-like transporter family FGM04_16960 PF03167 Uracil DNA glycosylase superfamily FGM04_16965 PF00892 EamA-like transporter family FGM04_16970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_16970 PF03466 LysR substrate binding domain FGM04_16975 PF00950 ABC 3 transport family FGM04_16980 PF00005 ABC transporter FGM04_16985 PF01297 Zinc-uptake complex component A periplasmic FGM04_17015 PF01551 Peptidase family M23 FGM04_17015 PF08525 Opacity-associated protein A N-terminal motif FGM04_17015 PF01476 LysM domain FGM04_17020 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_17025 PF04222 Protein of unknown function (DUF416) FGM04_17035 PF02470 MlaD protein FGM04_17040 PF04403 Paraquat-inducible protein A FGM04_17045 PF17209 Hfq protein FGM04_17050 PF13419 Haloacid dehalogenase-like hydrolase FGM04_17060 PF00563 EAL domain FGM04_17060 PF01590 GAF domain FGM04_17060 PF00360 Phytochrome region FGM04_17060 PF00990 Diguanylate cyclase, GGDEF domain FGM04_17065 PF00773 RNB domain FGM04_17065 PF08206 Ribonuclease B OB domain FGM04_17065 PF17876 Cold shock domain FGM04_17070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_17070 PF03466 LysR substrate binding domain FGM04_17075 PF00765 Autoinducer synthase FGM04_17080 PF03472 Autoinducer binding domain FGM04_17080 PF00196 Bacterial regulatory proteins, luxR family FGM04_17085 PF01810 LysE type translocator FGM04_17090 PF00672 HAMP domain FGM04_17090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_17095 PF07499 RuvA, C-terminal domain FGM04_17095 PF01330 RuvA N terminal domain FGM04_17100 PF17864 RuvB AAA lid domain FGM04_17100 PF05491 RuvB C-terminal winged helix domain FGM04_17100 PF05496 Holliday junction DNA helicase RuvB P-loop domain FGM04_17105 PF01654 Cytochrome bd terminal oxidase subunit I FGM04_17110 PF02322 Cytochrome bd terminal oxidase subunit II FGM04_17115 PF08173 Membrane bound YbgT-like protein FGM04_17120 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) FGM04_17125 PF03061 Thioesterase superfamily FGM04_17130 PF01618 MotA/TolQ/ExbB proton channel family FGM04_17135 PF02472 Biopolymer transport protein ExbD/TolR FGM04_17145 PF04052 TolB amino-terminal domain FGM04_17145 PF07676 WD40-like Beta Propeller Repeat FGM04_17150 PF00691 OmpA family FGM04_17155 PF13174 Tetratricopeptide repeat FGM04_17155 PF16331 TolA binding protein trimerisation FGM04_17220 PF00209 Sodium:neurotransmitter symporter family FGM04_17230 PF00209 Sodium:neurotransmitter symporter family FGM04_17250 PF07690 Major Facilitator Superfamily FGM04_17260 PF01037 Lrp/AsnC ligand binding domain FGM04_17275 PF00293 NUDIX domain FGM04_17285 PF01641 SelR domain FGM04_17290 PF00128 Alpha amylase, catalytic domain FGM04_17290 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FGM04_17295 PF00128 Alpha amylase, catalytic domain FGM04_17295 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) FGM04_17295 PF02806 Alpha amylase, C-terminal all-beta domain FGM04_17300 PF02446 4-alpha-glucanotransferase FGM04_17305 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FGM04_17305 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FGM04_17310 PF01263 Aldose 1-epimerase FGM04_17315 PF02445 Quinolinate synthetase A protein FGM04_17320 PF00672 HAMP domain FGM04_17320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_17325 PF01957 NfeD-like C-terminal, partner-binding FGM04_17330 PF01145 SPFH domain / Band 7 family FGM04_17330 PF16200 C-terminal region of band_7 FGM04_17335 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases FGM04_17335 PF10414 Sirohaem synthase dimerisation region FGM04_17335 PF14824 Sirohaem biosynthesis protein central FGM04_17340 PF01507 Phosphoadenosine phosphosulfate reductase family FGM04_17345 PF00009 Elongation factor Tu GTP binding domain FGM04_17350 PF03600 Citrate transporter FGM04_17350 PF02080 TrkA-C domain FGM04_17390 PF08447 PAS fold FGM04_17390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_17410 PF00005 ABC transporter FGM04_17425 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) FGM04_17440 PF00719 Inorganic pyrophosphatase FGM04_17445 PF11849 Domain of unknown function (DUF3369) FGM04_17455 PF00893 Small Multidrug Resistance protein FGM04_17460 PF00893 Small Multidrug Resistance protein FGM04_17465 PF05598 Transposase domain (DUF772) FGM04_17465 PF01609 Transposase DDE domain FGM04_17475 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily FGM04_17480 PF00905 Penicillin binding protein transpeptidase domain FGM04_17480 PF14814 Bifunctional transglycosylase second domain FGM04_17480 PF00912 Transglycosylase FGM04_17485 PF00270 DEAD/DEAH box helicase FGM04_17485 PF08482 ATP-dependent helicase C-terminal FGM04_17485 PF04408 Helicase associated domain (HA2) FGM04_17485 PF00271 Helicase conserved C-terminal domain FGM04_17495 PF17746 SfsA N-terminal OB domain FGM04_17495 PF03749 Sugar fermentation stimulation protein RE domain FGM04_17500 PF01258 Prokaryotic dksA/traR C4-type zinc finger FGM04_17505 PF00749 tRNA synthetases class I (E and Q), catalytic domain FGM04_17510 PF01743 Poly A polymerase head domain FGM04_17510 PF12626 Polymerase A arginine-rich C-terminus FGM04_17510 PF12627 Probable RNA and SrmB- binding site of polymerase A FGM04_17515 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) FGM04_17520 PF02548 Ketopantoate hydroxymethyltransferase FGM04_17525 PF02569 Pantoate-beta-alanine ligase FGM04_17555 PF01869 BadF/BadG/BcrA/BcrD ATPase family FGM04_17560 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component FGM04_17565 PF01061 ABC-2 type transporter FGM04_17570 PF00005 ABC transporter FGM04_17575 PF00156 Phosphoribosyl transferase domain FGM04_17580 PF00440 Bacterial regulatory proteins, tetR family FGM04_17585 PF02441 Flavoprotein FGM04_17590 PF08245 Mur ligase middle domain FGM04_17590 PF02875 Mur ligase family, glutamate ligase domain FGM04_17590 PF01225 Mur ligase family, catalytic domain FGM04_17595 PF01569 PAP2 superfamily FGM04_17600 PF01370 NAD dependent epimerase/dehydratase family FGM04_17605 PF00175 Oxidoreductase NAD-binding domain FGM04_17605 PF00042 Globin FGM04_17605 PF00970 Oxidoreductase FAD-binding domain FGM04_17610 PF03063 Prismane/CO dehydrogenase family FGM04_17615 PF00210 Ferritin-like domain FGM04_17620 PF01510 N-acetylmuramoyl-L-alanine amidase FGM04_17625 PF07308 Protein of unknown function (DUF1456) FGM04_17630 PF00512 His Kinase A (phospho-acceptor) domain FGM04_17630 PF00072 Response regulator receiver domain FGM04_17630 PF01627 Hpt domain FGM04_17630 PF00672 HAMP domain FGM04_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_17630 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FGM04_17635 PF05958 tRNA (Uracil-5-)-methyltransferase FGM04_17635 PF01938 TRAM domain FGM04_17640 PF04607 Region found in RelA / SpoT proteins FGM04_17640 PF13291 ACT domain FGM04_17640 PF02824 TGS domain FGM04_17645 PF03819 MazG nucleotide pyrophosphohydrolase domain FGM04_17650 PF00117 Glutamine amidotransferase class-I FGM04_17650 PF06418 CTP synthase N-terminus FGM04_17655 PF00113 Enolase, C-terminal TIM barrel domain FGM04_17655 PF03952 Enolase, N-terminal domain FGM04_17670 PF13276 HTH-like domain FGM04_17670 PF13683 Integrase core domain FGM04_17705 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ FGM04_17715 PF00005 ABC transporter FGM04_17715 PF12848 ABC transporter FGM04_17720 PF00571 CBS domain FGM04_17720 PF01380 SIS domain FGM04_17735 PF00155 Aminotransferase class I and II FGM04_17735 PF00392 Bacterial regulatory proteins, gntR family FGM04_17745 PF01810 LysE type translocator FGM04_17750 PF01177 Asp/Glu/Hydantoin racemase FGM04_17760 PF04074 YhcH/YjgK/YiaL FGM04_17765 PF00871 Acetokinase family FGM04_17770 PF00924 Mechanosensitive ion channel FGM04_17775 PF17969 L,D-transpeptidase C-terminal domain FGM04_17775 PF03734 L,D-transpeptidase catalytic domain FGM04_17785 PF00474 Sodium:solute symporter family FGM04_17790 PF04977 Septum formation initiator FGM04_17795 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase FGM04_17800 PF02542 YgbB family FGM04_17805 PF01142 tRNA pseudouridine synthase D (TruD) FGM04_17810 PF01975 Survival protein SurE FGM04_17820 PF09335 SNARE associated Golgi protein FGM04_17825 PF01476 LysM domain FGM04_17825 PF01551 Peptidase family M23 FGM04_17830 PF00140 Sigma-70 factor, region 1.2 FGM04_17830 PF04542 Sigma-70 region 2 FGM04_17830 PF04545 Sigma-70, region 4 FGM04_17830 PF04539 Sigma-70 region 3 FGM04_17835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family FGM04_17845 PF04480 Protein of unknown function (DUF559) FGM04_17855 PF03466 LysR substrate binding domain FGM04_17855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_17860 PF04371 Porphyromonas-type peptidyl-arginine deiminase FGM04_17865 PF01425 Amidase FGM04_17880 PF00753 Metallo-beta-lactamase superfamily FGM04_17890 PF00271 Helicase conserved C-terminal domain FGM04_17890 PF00270 DEAD/DEAH box helicase FGM04_17895 PF00990 Diguanylate cyclase, GGDEF domain FGM04_17905 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase FGM04_17910 PF03150 Di-haem cytochrome c peroxidase FGM04_17910 PF00034 Cytochrome c FGM04_17920 PF00445 Ribonuclease T2 family FGM04_17955 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain FGM04_17955 PF00293 NUDIX domain FGM04_17955 PF09297 NADH pyrophosphatase zinc ribbon domain FGM04_17970 PF00072 Response regulator receiver domain FGM04_17970 PF00486 Transcriptional regulatory protein, C terminal FGM04_17990 PF08335 GlnD PII-uridylyltransferase FGM04_17990 PF03710 Glutamate-ammonia ligase adenylyltransferase FGM04_17995 PF00860 Permease family FGM04_18005 PF12848 ABC transporter FGM04_18005 PF00005 ABC transporter FGM04_18020 PF01464 Transglycosylase SLT domain FGM04_18035 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) FGM04_18040 PF01370 NAD dependent epimerase/dehydratase family FGM04_18050 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_18050 PF00005 ABC transporter FGM04_18055 PF00005 ABC transporter FGM04_18055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_18060 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_18065 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_18065 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_18070 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_18075 PF07715 TonB-dependent Receptor Plug Domain FGM04_18075 PF00593 TonB dependent receptor FGM04_18085 PF01618 MotA/TolQ/ExbB proton channel family FGM04_18090 PF01618 MotA/TolQ/ExbB proton channel family FGM04_18095 PF02472 Biopolymer transport protein ExbD/TolR FGM04_18110 PF17969 L,D-transpeptidase C-terminal domain FGM04_18110 PF03734 L,D-transpeptidase catalytic domain FGM04_18115 PF13006 Insertion element 4 transposase N-terminal FGM04_18115 PF01609 Transposase DDE domain FGM04_18120 PF13737 Transposase DDE domain FGM04_18125 PF00289 Biotin carboxylase, N-terminal domain FGM04_18125 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain FGM04_18125 PF02785 Biotin carboxylase C-terminal domain FGM04_18130 PF00364 Biotin-requiring enzyme FGM04_18135 PF01220 Dehydroquinase class II FGM04_18140 PF13193 AMP-binding enzyme C-terminal domain FGM04_18140 PF16177 Acetyl-coenzyme A synthetase N-terminus FGM04_18140 PF00501 AMP-binding enzyme FGM04_18150 PF00990 Diguanylate cyclase, GGDEF domain FGM04_18150 PF00563 EAL domain FGM04_18150 PF03707 Bacterial signalling protein N terminal repeat FGM04_18160 PF02613 Nitrate reductase delta subunit FGM04_18165 PF00384 Molybdopterin oxidoreductase FGM04_18165 PF18364 Molybdopterin oxidoreductase N-terminal domain FGM04_18165 PF01568 Molydopterin dinucleotide binding domain FGM04_18170 PF03264 NapC/NirT cytochrome c family, N-terminal region FGM04_18175 PF00486 Transcriptional regulatory protein, C terminal FGM04_18175 PF00072 Response regulator receiver domain FGM04_18185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FGM04_18190 PF00072 Response regulator receiver domain FGM04_18190 PF00672 HAMP domain FGM04_18190 PF01627 Hpt domain FGM04_18190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_18190 PF00512 His Kinase A (phospho-acceptor) domain FGM04_18200 PF00464 Serine hydroxymethyltransferase FGM04_18205 PF03477 ATP cone domain FGM04_18210 PF01872 RibD C-terminal domain FGM04_18210 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region FGM04_18215 PF00677 Lumazine binding domain FGM04_18220 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase FGM04_18220 PF00925 GTP cyclohydrolase II FGM04_18225 PF00885 6,7-dimethyl-8-ribityllumazine synthase FGM04_18230 PF01029 NusB family FGM04_18235 PF02769 AIR synthase related protein, C-terminal domain FGM04_18235 PF00586 AIR synthase related protein, N-terminal domain FGM04_18240 PF04608 Phosphatidylglycerophosphatase A FGM04_18245 PF00005 ABC transporter FGM04_18245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_18250 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_18260 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_18260 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_18265 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_18270 PF09526 Probable metal-binding protein (DUF2387) FGM04_18280 PF01584 CheW-like domain FGM04_18280 PF00072 Response regulator receiver domain FGM04_18285 PF00561 alpha/beta hydrolase fold FGM04_18290 PF00360 Phytochrome region FGM04_18290 PF00563 EAL domain FGM04_18290 PF00990 Diguanylate cyclase, GGDEF domain FGM04_18290 PF01590 GAF domain FGM04_18295 PF06794 Uncharacterised protein family (UPF0270) FGM04_18300 PF00485 Phosphoribulokinase / Uridine kinase family FGM04_18315 PF02566 OsmC-like protein FGM04_18320 PF13545 Crp-like helix-turn-helix domain FGM04_18320 PF00027 Cyclic nucleotide-binding domain FGM04_18325 PF08241 Methyltransferase domain FGM04_18330 PF00267 Gram-negative porin FGM04_18340 PF00582 Universal stress protein family FGM04_18345 PF12832 MFS_1 like family FGM04_18355 PF13443 Cro/C1-type HTH DNA-binding domain FGM04_18365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_18365 PF00512 His Kinase A (phospho-acceptor) domain FGM04_18365 PF00672 HAMP domain FGM04_18365 PF01627 Hpt domain FGM04_18365 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) FGM04_18365 PF00072 Response regulator receiver domain FGM04_18370 PF08329 Chitinase A, N-terminal domain FGM04_18370 PF00704 Glycosyl hydrolases family 18 FGM04_18375 PF00990 Diguanylate cyclase, GGDEF domain FGM04_18375 PF08448 PAS fold FGM04_18380 PF08329 Chitinase A, N-terminal domain FGM04_18380 PF00704 Glycosyl hydrolases family 18 FGM04_18385 PF12561 ToxR activated gene A lipoprotein domain FGM04_18385 PF17945 Beta/Gamma crystallin FGM04_18390 PF18416 N-acetylglucosamine binding protein domain 2 FGM04_18390 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading FGM04_18430 PF00704 Glycosyl hydrolases family 18 FGM04_18430 PF06483 Chitinase C FGM04_18435 PF00072 Response regulator receiver domain FGM04_18435 PF01584 CheW-like domain FGM04_18440 PF13472 GDSL-like Lipase/Acylhydrolase family FGM04_18445 PF00005 ABC transporter FGM04_18455 PF01370 NAD dependent epimerase/dehydratase family FGM04_18455 PF08338 Domain of unknown function (DUF1731) FGM04_18460 PF00563 EAL domain FGM04_18460 PF12792 CSS motif domain associated with EAL FGM04_18465 PF00155 Aminotransferase class I and II FGM04_18470 PF02390 Putative methyltransferase FGM04_18475 PF04320 Protein with unknown function (DUF469) FGM04_18480 PF04960 Glutaminase FGM04_18485 PF00581 Rhodanese-like domain FGM04_18500 PF00994 Probable molybdopterin binding domain FGM04_18510 PF06738 Putative threonine/serine exporter FGM04_18515 PF12821 Threonine/Serine exporter, ThrE FGM04_18520 PF00186 Dihydrofolate reductase FGM04_18525 PF01507 Phosphoadenosine phosphosulfate reductase family FGM04_18530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain FGM04_18530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain FGM04_18535 PF00258 Flavodoxin FGM04_18535 PF00175 Oxidoreductase NAD-binding domain FGM04_18535 PF00667 FAD binding domain FGM04_18540 PF02567 Phenazine biosynthesis-like protein FGM04_18545 PF00152 tRNA synthetases class II (D, K and N) FGM04_18545 PF01336 OB-fold nucleic acid binding domain FGM04_18555 PF02743 Cache domain FGM04_18555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_18555 PF00672 HAMP domain FGM04_18560 PF03616 Sodium/glutamate symporter FGM04_18565 PF17763 Glutaminase/Asparaginase C-terminal domain FGM04_18565 PF00710 Asparaginase, N-terminal FGM04_18570 PF07023 Protein of unknown function (DUF1315) FGM04_18575 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain FGM04_18575 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain FGM04_18590 PF04055 Radical SAM superfamily FGM04_18590 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family FGM04_18595 PF03099 Biotin/lipoate A/B protein ligase family FGM04_18600 PF04359 Protein of unknown function (DUF493) FGM04_18605 PF07943 Penicillin-binding protein 5, C-terminal domain FGM04_18605 PF00768 D-alanyl-D-alanine carboxypeptidase FGM04_18610 PF03330 Lytic transglycolase FGM04_18610 PF05036 Sporulation related domain FGM04_18615 PF13406 Transglycosylase SLT domain FGM04_18620 PF01098 Cell cycle protein FGM04_18625 PF03717 Penicillin-binding Protein dimerisation domain FGM04_18625 PF00905 Penicillin binding protein transpeptidase domain FGM04_18630 PF02590 Predicted SPOUT methyltransferase FGM04_18640 PF01467 Cytidylyltransferase-like FGM04_18655 PF08264 Anticodon-binding domain of tRNA FGM04_18655 PF00133 tRNA synthetases class I (I, L, M and V) FGM04_18655 PF13603 Leucyl-tRNA synthetase, Domain 2 FGM04_18660 PF07295 Zinc-ribbon containing domain FGM04_18665 PF01523 Putative modulator of DNA gyrase FGM04_18670 PF01523 Putative modulator of DNA gyrase FGM04_18675 PF00258 Flavodoxin FGM04_18680 PF00589 Phage integrase family FGM04_18680 PF02899 Phage integrase, N-terminal SAM-like domain FGM04_18685 PF00990 Diguanylate cyclase, GGDEF domain FGM04_18685 PF00072 Response regulator receiver domain FGM04_18690 PF01741 Large-conductance mechanosensitive channel, MscL FGM04_18700 PF02272 DHHA1 domain FGM04_18700 PF01368 DHH family FGM04_18700 PF17768 RecJ OB domain FGM04_18705 PF13411 MerR HTH family regulatory protein FGM04_18710 PF00795 Carbon-nitrogen hydrolase FGM04_18715 PF00571 CBS domain FGM04_18715 PF03471 Transporter associated domain FGM04_18720 PF02130 Uncharacterized protein family UPF0054 FGM04_18725 PF02562 PhoH-like protein FGM04_18730 PF01938 TRAM domain FGM04_18730 PF00919 Uncharacterized protein family UPF0004 FGM04_18730 PF04055 Radical SAM superfamily FGM04_18735 PF01494 FAD binding domain FGM04_18740 PF00857 Isochorismatase family FGM04_18745 PF00313 'Cold-shock' DNA-binding domain FGM04_18750 PF00990 Diguanylate cyclase, GGDEF domain FGM04_18750 PF05230 MASE2 domain FGM04_18755 PF03466 LysR substrate binding domain FGM04_18755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_18765 PF13419 Haloacid dehalogenase-like hydrolase FGM04_18780 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain FGM04_18780 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain FGM04_18790 PF01132 Elongation factor P (EF-P) OB domain FGM04_18790 PF08207 Elongation factor P (EF-P) KOW-like domain FGM04_18790 PF09285 Elongation factor P, C-terminal FGM04_18800 PF00478 IMP dehydrogenase / GMP reductase domain FGM04_18810 PF00512 His Kinase A (phospho-acceptor) domain FGM04_18810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_18810 PF08521 Two-component sensor kinase N-terminal FGM04_18815 PF00486 Transcriptional regulatory protein, C terminal FGM04_18815 PF00072 Response regulator receiver domain FGM04_18825 PF00106 short chain dehydrogenase FGM04_18835 PF00501 AMP-binding enzyme FGM04_18850 PF01266 FAD dependent oxidoreductase FGM04_18860 PF17932 Tetracyclin repressor-like, C-terminal domain FGM04_18860 PF00440 Bacterial regulatory proteins, tetR family FGM04_18865 PF06224 Winged helix DNA-binding domain FGM04_18875 PF01546 Peptidase family M20/M25/M40 FGM04_18875 PF07687 Peptidase dimerisation domain FGM04_18880 PF07670 Nucleoside recognition FGM04_18885 PF07670 Nucleoside recognition FGM04_18890 PF02313 Fumarate reductase subunit D FGM04_18895 PF02300 Fumarate reductase subunit C FGM04_18900 PF13183 4Fe-4S dicluster domain FGM04_18900 PF13085 2Fe-2S iron-sulfur cluster binding domain FGM04_18905 PF02910 Fumarate reductase flavoprotein C-term FGM04_18905 PF00890 FAD binding domain FGM04_18910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_18910 PF00672 HAMP domain FGM04_18910 PF02743 Cache domain FGM04_18915 PF03009 Glycerophosphoryl diester phosphodiesterase family FGM04_18920 PF00924 Mechanosensitive ion channel FGM04_18920 PF12794 Mechanosensitive ion channel inner membrane domain 1 FGM04_18920 PF12795 Mechanosensitive ion channel porin domain FGM04_18930 PF01551 Peptidase family M23 FGM04_18930 PF08525 Opacity-associated protein A N-terminal motif FGM04_18930 PF01476 LysM domain FGM04_18940 PF03466 LysR substrate binding domain FGM04_18940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_18955 PF00672 HAMP domain FGM04_18955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_18960 PF03466 LysR substrate binding domain FGM04_18960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_18965 PF00905 Penicillin binding protein transpeptidase domain FGM04_18965 PF00912 Transglycosylase FGM04_18965 PF17092 Penicillin-binding protein OB-like domain FGM04_18990 PF00263 Bacterial type II and III secretion system protein FGM04_18990 PF03958 Bacterial type II/III secretion system short domain FGM04_18990 PF07660 Secretin and TonB N terminus short domain FGM04_18990 PF11741 AMIN domain FGM04_18995 PF01202 Shikimate kinase FGM04_19000 PF01761 3-dehydroquinate synthase FGM04_19010 PF02086 D12 class N6 adenine-specific DNA methyltransferase FGM04_19015 PF00834 Ribulose-phosphate 3 epimerase family FGM04_19020 PF13419 Haloacid dehalogenase-like hydrolase FGM04_19025 PF00579 tRNA synthetases class I (W and Y) FGM04_19035 PF00117 Glutamine amidotransferase class-I FGM04_19040 PF00202 Aminotransferase class-III FGM04_19045 PF04958 Arginine N-succinyltransferase beta subunit FGM04_19050 PF00171 Aldehyde dehydrogenase family FGM04_19065 PF13419 Haloacid dehalogenase-like hydrolase FGM04_19070 PF07690 Major Facilitator Superfamily FGM04_19075 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II FGM04_19075 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase FGM04_19075 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg FGM04_19075 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain FGM04_19075 PF10371 Domain of unknown function FGM04_19080 PF00128 Alpha amylase, catalytic domain FGM04_19080 PF16657 Maltogenic Amylase, C-terminal domain FGM04_19090 PF07859 alpha/beta hydrolase fold FGM04_19105 PF01048 Phosphorylase superfamily FGM04_19110 PF04973 Nicotinamide mononucleotide transporter FGM04_19115 PF02080 TrkA-C domain FGM04_19115 PF03600 Citrate transporter FGM04_19160 PF01926 50S ribosome-binding GTPase FGM04_19160 PF06071 Protein of unknown function (DUF933) FGM04_19165 PF01195 Peptidyl-tRNA hydrolase FGM04_19170 PF00149 Calcineurin-like phosphoesterase FGM04_19170 PF02872 5'-nucleotidase, C-terminal domain FGM04_19175 PF14572 Phosphoribosyl synthetase-associated domain FGM04_19175 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase FGM04_19185 PF08544 GHMP kinases C terminal FGM04_19185 PF00288 GHMP kinases N terminal domain FGM04_19190 PF03550 Outer membrane lipoprotein LolB FGM04_19195 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain FGM04_19195 PF01488 Shikimate / quinate 5-dehydrogenase FGM04_19195 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain FGM04_19200 PF03462 PCRF domain FGM04_19200 PF00472 RF-1 domain FGM04_19205 PF17827 PrmC N-terminal domain FGM04_19205 PF13847 Methyltransferase domain FGM04_19215 PF13369 Transglutaminase-like superfamily FGM04_19220 PF00793 DAHP synthetase I family FGM04_19225 PF00375 Sodium:dicarboxylate symporter family FGM04_19230 PF01228 Glycine radical FGM04_19240 PF03167 Uracil DNA glycosylase superfamily FGM04_19250 PF01204 Trehalase FGM04_19260 PF01161 Phosphatidylethanolamine-binding protein FGM04_19280 PF00155 Aminotransferase class I and II FGM04_19285 PF07690 Major Facilitator Superfamily FGM04_19290 PF03466 LysR substrate binding domain FGM04_19290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_19295 PF00106 short chain dehydrogenase FGM04_19300 PF08496 Peptidase family S49 N-terminal FGM04_19300 PF01343 Peptidase family S49 FGM04_19305 PF07690 Major Facilitator Superfamily FGM04_19310 PF02635 DsrE/DsrF-like family FGM04_19320 PF12838 4Fe-4S dicluster domain FGM04_19330 PF00989 PAS fold FGM04_19330 PF00990 Diguanylate cyclase, GGDEF domain FGM04_19330 PF01590 GAF domain FGM04_19330 PF00563 EAL domain FGM04_19340 PF05598 Transposase domain (DUF772) FGM04_19340 PF01609 Transposase DDE domain FGM04_19370 PF04996 Succinylarginine dihydrolase FGM04_19375 PF01396 Topoisomerase DNA binding C4 zinc finger FGM04_19375 PF01751 Toprim domain FGM04_19375 PF01131 DNA topoisomerase FGM04_19375 PF08272 Topoisomerase I zinc-ribbon-like FGM04_19385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_19385 PF08447 PAS fold FGM04_19390 PF02838 Glycosyl hydrolase family 20, domain 2 FGM04_19390 PF00728 Glycosyl hydrolase family 20, catalytic domain FGM04_19405 PF00005 ABC transporter FGM04_19405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_19410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region FGM04_19410 PF00005 ABC transporter FGM04_19415 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_19415 PF12911 N-terminal TM domain of oligopeptide transport permease C FGM04_19420 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_19425 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle FGM04_19430 PF00512 His Kinase A (phospho-acceptor) domain FGM04_19430 PF00072 Response regulator receiver domain FGM04_19430 PF09308 LuxQ, periplasmic FGM04_19430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_19450 PF10725 Protein of unknown function (DUF2517) FGM04_19460 PF05114 Protein of unknown function (DUF692) FGM04_19480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_19480 PF08447 PAS fold FGM04_19480 PF13426 PAS domain FGM04_19495 PF04632 Fusaric acid resistance protein family FGM04_19500 PF00994 Probable molybdopterin binding domain FGM04_19500 PF03454 MoeA C-terminal region (domain IV) FGM04_19500 PF03453 MoeA N-terminal region (domain I and II) FGM04_19505 PF12804 MobA-like NTP transferase domain FGM04_19510 PF00005 ABC transporter FGM04_19515 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_19520 PF12849 PBP superfamily domain FGM04_19525 PF02954 Bacterial regulatory protein, Fis family FGM04_19525 PF00072 Response regulator receiver domain FGM04_19525 PF00158 Sigma-54 interaction domain FGM04_19530 PF00512 His Kinase A (phospho-acceptor) domain FGM04_19530 PF00989 PAS fold FGM04_19530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_19540 PF02634 FdhD/NarQ family FGM04_19580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FGM04_19580 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FGM04_19580 PF12838 4Fe-4S dicluster domain FGM04_19580 PF00384 Molybdopterin oxidoreductase FGM04_19580 PF00384 Molybdopterin oxidoreductase FGM04_19580 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FGM04_19580 PF01568 Molydopterin dinucleotide binding domain FGM04_19580 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FGM04_19580 PF12838 4Fe-4S dicluster domain FGM04_19580 PF01568 Molydopterin dinucleotide binding domain FGM04_19585 PF13247 4Fe-4S dicluster domain FGM04_19605 PF00390 Malic enzyme, N-terminal domain FGM04_19605 PF03949 Malic enzyme, NAD binding domain FGM04_19615 PF00691 OmpA family FGM04_19615 PF01389 OmpA-like transmembrane domain FGM04_19620 PF00691 OmpA family FGM04_19620 PF01389 OmpA-like transmembrane domain FGM04_19635 PF13520 Amino acid permease FGM04_19640 PF01734 Patatin-like phospholipase FGM04_19645 PF00990 Diguanylate cyclase, GGDEF domain FGM04_19645 PF17158 Membrane-associated sensor, integral membrane domain FGM04_19650 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_19650 PF00529 HlyD membrane-fusion protein of T1SS FGM04_19655 PF00873 AcrB/AcrD/AcrF family FGM04_19660 PF11842 Domain of unknown function (DUF3362) FGM04_19660 PF08497 Radical SAM N-terminal FGM04_19660 PF04055 Radical SAM superfamily FGM04_19685 PF03466 LysR substrate binding domain FGM04_19685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_19690 PF01408 Oxidoreductase family, NAD-binding Rossmann fold FGM04_19695 PF04358 DsrC like protein FGM04_19700 PF12805 FUSC-like inner membrane protein yccS FGM04_19705 PF01027 Inhibitor of apoptosis-promoting Bax1 FGM04_19715 PF04794 YdjC-like protein FGM04_19720 PF02056 Family 4 glycosyl hydrolase FGM04_19720 PF11975 Family 4 glycosyl hydrolase C-terminal domain FGM04_19725 PF07883 Cupin domain FGM04_19725 PF12833 Helix-turn-helix domain FGM04_19730 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit FGM04_19735 PF00232 Glycosyl hydrolase family 1 FGM04_19740 PF02378 Phosphotransferase system, EIIC FGM04_19745 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_19750 PF01203 Type II secretion system (T2SS), protein N FGM04_19755 PF04612 Type II secretion system (T2SS), protein M FGM04_19760 PF12693 GspL periplasmic domain FGM04_19760 PF05134 Type II secretion system (T2SS), protein L FGM04_19765 PF03934 Type II secretion system (T2SS), protein K FGM04_19770 PF07963 Prokaryotic N-terminal methylation motif FGM04_19770 PF11612 Type II secretion system (T2SS), protein J FGM04_19775 PF02501 Type II secretion system (T2SS), protein I FGM04_19775 PF07963 Prokaryotic N-terminal methylation motif FGM04_19780 PF07963 Prokaryotic N-terminal methylation motif FGM04_19780 PF12019 Type II transport protein GspH FGM04_19785 PF08334 Type II secretion system (T2SS), protein G FGM04_19785 PF07963 Prokaryotic N-terminal methylation motif FGM04_19790 PF00482 Type II secretion system (T2SS), protein F FGM04_19795 PF00437 Type II/IV secretion system protein FGM04_19800 PF00263 Bacterial type II and III secretion system protein FGM04_19800 PF03958 Bacterial type II/III secretion system short domain FGM04_19805 PF11356 Type II secretion system protein C FGM04_19810 PF16537 Type II secretion system protein B FGM04_19815 PF01471 Putative peptidoglycan binding domain FGM04_19815 PF13401 AAA domain FGM04_19820 PF00672 HAMP domain FGM04_19820 PF01966 HD domain FGM04_19825 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III FGM04_19825 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal FGM04_19835 PF01434 Peptidase family M41 FGM04_19835 PF17862 AAA+ lid domain FGM04_19835 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_19840 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_19845 PF00381 PTS HPr component phosphorylation site FGM04_19850 PF02896 PEP-utilising enzyme, TIM barrel domain FGM04_19850 PF05524 PEP-utilising enzyme, N-terminal FGM04_19850 PF00391 PEP-utilising enzyme, mobile domain FGM04_19855 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 FGM04_19860 PF08448 PAS fold FGM04_19860 PF00990 Diguanylate cyclase, GGDEF domain FGM04_19865 PF01431 Peptidase family M13 FGM04_19865 PF05649 Peptidase family M13 FGM04_19875 PF12794 Mechanosensitive ion channel inner membrane domain 1 FGM04_19875 PF00924 Mechanosensitive ion channel FGM04_19875 PF12795 Mechanosensitive ion channel porin domain FGM04_19880 PF02887 Pyruvate kinase, alpha/beta domain FGM04_19880 PF00224 Pyruvate kinase, barrel domain FGM04_19890 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase FGM04_19895 PF13476 AAA domain FGM04_19900 PF00149 Calcineurin-like phosphoesterase FGM04_19900 PF12320 Type 5 capsule protein repressor C-terminal domain FGM04_19910 PF04381 Putative exonuclease, RdgC FGM04_19920 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase FGM04_19920 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase FGM04_19925 PF02690 Na+/Pi-cotransporter FGM04_19935 PF00324 Amino acid permease FGM04_19945 PF00324 Amino acid permease FGM04_19950 PF00202 Aminotransferase class-III FGM04_19955 PF00171 Aldehyde dehydrogenase family FGM04_19960 PF07883 Cupin domain FGM04_19960 PF01381 Helix-turn-helix FGM04_19965 PF01266 FAD dependent oxidoreductase FGM04_19995 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region FGM04_19995 PF01243 Pyridoxamine 5'-phosphate oxidase FGM04_20000 PF00043 Glutathione S-transferase, C-terminal domain FGM04_20000 PF13417 Glutathione S-transferase, N-terminal domain FGM04_20020 PF08007 Cupin superfamily protein FGM04_20025 PF00206 Lyase FGM04_20025 PF08328 Adenylosuccinate lyase C-terminal FGM04_20030 PF04356 Protein of unknown function (DUF489) FGM04_20040 PF00293 NUDIX domain FGM04_20045 PF00849 RNA pseudouridylate synthase FGM04_20055 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_20060 PF07690 Major Facilitator Superfamily FGM04_20065 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit FGM04_20065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 FGM04_20065 PF02378 Phosphotransferase system, EIIC FGM04_20080 PF01609 Transposase DDE domain FGM04_20080 PF05598 Transposase domain (DUF772) FGM04_20090 PF01609 Transposase DDE domain FGM04_20090 PF05598 Transposase domain (DUF772) FGM04_20115 PF00356 Bacterial regulatory proteins, lacI family FGM04_20115 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family FGM04_20120 PF02378 Phosphotransferase system, EIIC FGM04_20120 PF00367 phosphotransferase system, EIIB FGM04_20125 PF00155 Aminotransferase class I and II FGM04_20130 PF02075 Crossover junction endodeoxyribonuclease RuvC FGM04_20140 PF00873 AcrB/AcrD/AcrF family FGM04_20145 PF02770 Acyl-CoA dehydrogenase, middle domain FGM04_20145 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FGM04_20145 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FGM04_20145 PF09317 Domain of unknown function (DUF1974) FGM04_20150 PF00440 Bacterial regulatory proteins, tetR family FGM04_20170 PF13148 Protein of unknown function (DUF3987) FGM04_20190 PF09588 YqaJ-like viral recombinase domain FGM04_20235 PF04002 RadC-like JAB domain FGM04_20245 PF05598 Transposase domain (DUF772) FGM04_20245 PF01609 Transposase DDE domain FGM04_20305 PF00589 Phage integrase family FGM04_20305 PF13495 Phage integrase, N-terminal SAM-like domain FGM04_20310 PF01609 Transposase DDE domain FGM04_20310 PF05598 Transposase domain (DUF772) FGM04_20320 PF00271 Helicase conserved C-terminal domain FGM04_20320 PF12419 SNF2 Helicase protein FGM04_20320 PF00176 SNF2 family N-terminal domain FGM04_20345 PF11867 Domain of unknown function (DUF3387) FGM04_20345 PF18766 SWI2/SNF2 ATPase FGM04_20345 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) FGM04_20365 PF02384 N-6 DNA Methylase FGM04_20365 PF12161 HsdM N-terminal domain FGM04_20380 PF00717 Peptidase S24-like FGM04_20385 PF00817 impB/mucB/samB family FGM04_20385 PF13438 Domain of unknown function (DUF4113) FGM04_20385 PF11798 IMS family HHH motif FGM04_20385 PF11799 impB/mucB/samB family C-terminal domain FGM04_20400 PF00480 ROK family FGM04_20405 PF17128 Domain of unknown function (DUF5107) FGM04_20405 PF13181 Tetratricopeptide repeat FGM04_20410 PF00083 Sugar (and other) transporter FGM04_20420 PF00384 Molybdopterin oxidoreductase FGM04_20420 PF12838 4Fe-4S dicluster domain FGM04_20420 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region FGM04_20420 PF01568 Molydopterin dinucleotide binding domain FGM04_20420 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FGM04_20425 PF03707 Bacterial signalling protein N terminal repeat FGM04_20425 PF00990 Diguanylate cyclase, GGDEF domain FGM04_20425 PF00563 EAL domain FGM04_20440 PF01609 Transposase DDE domain FGM04_20440 PF05598 Transposase domain (DUF772) FGM04_20465 PF02796 Helix-turn-helix domain of resolvase FGM04_20465 PF00239 Resolvase, N terminal domain FGM04_20505 PF01668 SmpB protein FGM04_20510 PF03364 Polyketide cyclase / dehydrase and lipid transport FGM04_20515 PF03658 RnfH family Ubiquitin FGM04_20520 PF07687 Peptidase dimerisation domain FGM04_20520 PF01546 Peptidase family M20/M25/M40 FGM04_20525 PF09317 Domain of unknown function (DUF1974) FGM04_20525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain FGM04_20525 PF00441 Acyl-CoA dehydrogenase, C-terminal domain FGM04_20525 PF02770 Acyl-CoA dehydrogenase, middle domain FGM04_20530 PF13580 SIS domain FGM04_20535 PF13230 Glutamine amidotransferases class-II FGM04_20545 PF01933 Uncharacterised protein family UPF0052 FGM04_20555 PF09456 RcsC Alpha-Beta-Loop (ABL) FGM04_20555 PF00512 His Kinase A (phospho-acceptor) domain FGM04_20555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_20555 PF00072 Response regulator receiver domain FGM04_20565 PF00196 Bacterial regulatory proteins, luxR family FGM04_20565 PF00072 Response regulator receiver domain FGM04_20570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_20570 PF07730 Histidine kinase FGM04_20570 PF00672 HAMP domain FGM04_20570 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term FGM04_20575 PF06463 Molybdenum Cofactor Synthesis C FGM04_20575 PF04055 Radical SAM superfamily FGM04_20580 PF13187 4Fe-4S dicluster domain FGM04_20580 PF12838 4Fe-4S dicluster domain FGM04_20590 PF10518 TAT (twin-arginine translocation) pathway signal sequence FGM04_20590 PF04879 Molybdopterin oxidoreductase Fe4S4 domain FGM04_20590 PF01568 Molydopterin dinucleotide binding domain FGM04_20590 PF00384 Molybdopterin oxidoreductase FGM04_20595 PF12838 4Fe-4S dicluster domain FGM04_20595 PF12800 4Fe-4S binding domain FGM04_20600 PF12801 4Fe-4S binding domain FGM04_20600 PF13237 4Fe-4S dicluster domain FGM04_20605 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) FGM04_20610 PF03264 NapC/NirT cytochrome c family, N-terminal region FGM04_20615 PF00994 Probable molybdopterin binding domain FGM04_20620 PF01967 MoaC family FGM04_20625 PF02597 ThiS family FGM04_20630 PF02391 MoaE protein FGM04_20640 PF00528 Binding-protein-dependent transport system inner membrane component FGM04_20645 PF03459 TOBE domain FGM04_20645 PF00005 ABC transporter FGM04_20650 PF00561 alpha/beta hydrolase fold FGM04_20655 PF00899 ThiF family FGM04_20660 PF03453 MoeA N-terminal region (domain I and II) FGM04_20660 PF03454 MoeA C-terminal region (domain IV) FGM04_20660 PF00994 Probable molybdopterin binding domain FGM04_20665 PF01227 GTP cyclohydrolase I FGM04_20670 PF17200 Single Cache domain 2 FGM04_20670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_20670 PF00672 HAMP domain FGM04_20675 PF01268 Formate--tetrahydrofolate ligase FGM04_20690 PF04264 YceI-like domain FGM04_20700 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain FGM04_20700 PF05221 S-adenosyl-L-homocysteine hydrolase FGM04_20735 PF01546 Peptidase family M20/M25/M40 FGM04_20735 PF07687 Peptidase dimerisation domain FGM04_20745 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain FGM04_20745 PF17944 Arginine decarboxylase C-terminal helical extension FGM04_20745 PF17810 Arginine decarboxylase helical bundle domain FGM04_20760 PF00672 HAMP domain FGM04_20760 PF12729 Four helix bundle sensory module for signal transduction FGM04_20760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_20770 PF01042 Endoribonuclease L-PSP FGM04_20775 PF03313 Serine dehydratase alpha chain FGM04_20780 PF08348 YheO-like PAS domain FGM04_20780 PF13309 HTH domain FGM04_20785 PF00300 Histidine phosphatase superfamily (branch 1) FGM04_20790 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase FGM04_20790 PF07055 Enoyl reductase FAD binding domain FGM04_20790 PF12241 Trans-2-enoyl-CoA reductase catalytic region FGM04_20795 PF03606 C4-dicarboxylate anaerobic carrier FGM04_20805 PF12729 Four helix bundle sensory module for signal transduction FGM04_20805 PF00672 HAMP domain FGM04_20805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_20810 PF01810 LysE type translocator FGM04_20825 PF02080 TrkA-C domain FGM04_20825 PF03471 Transporter associated domain FGM04_20825 PF00999 Sodium/hydrogen exchanger family FGM04_20835 PF02557 D-alanyl-D-alanine carboxypeptidase FGM04_20840 PF07687 Peptidase dimerisation domain FGM04_20840 PF01546 Peptidase family M20/M25/M40 FGM04_20845 PF03960 ArsC family FGM04_20855 PF03606 C4-dicarboxylate anaerobic carrier FGM04_20860 PF07687 Peptidase dimerisation domain FGM04_20860 PF01546 Peptidase family M20/M25/M40 FGM04_20870 PF03605 Anaerobic c4-dicarboxylate membrane transporter FGM04_20880 PF01336 OB-fold nucleic acid binding domain FGM04_20880 PF00152 tRNA synthetases class II (D, K and N) FGM04_20895 PF00202 Aminotransferase class-III FGM04_20900 PF06968 Biotin and Thiamin Synthesis associated domain FGM04_20900 PF04055 Radical SAM superfamily FGM04_20905 PF00155 Aminotransferase class I and II FGM04_20910 PF12697 Alpha/beta hydrolase family FGM04_20910 PF08241 Methyltransferase domain FGM04_20920 PF01435 Peptidase family M48 FGM04_20925 PF13426 PAS domain FGM04_20925 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_20925 PF08447 PAS fold FGM04_20935 PF01476 LysM domain FGM04_20935 PF17969 L,D-transpeptidase C-terminal domain FGM04_20935 PF03734 L,D-transpeptidase catalytic domain FGM04_20945 PF00873 AcrB/AcrD/AcrF family FGM04_20950 PF00529 HlyD membrane-fusion protein of T1SS FGM04_20950 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_20955 PF00072 Response regulator receiver domain FGM04_20955 PF00486 Transcriptional regulatory protein, C terminal FGM04_20960 PF00512 His Kinase A (phospho-acceptor) domain FGM04_20960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase FGM04_20960 PF00672 HAMP domain FGM04_20965 PF04434 SWIM zinc finger FGM04_20965 PF00271 Helicase conserved C-terminal domain FGM04_20965 PF00176 SNF2 family N-terminal domain FGM04_20970 PF05472 DNA replication terminus site-binding protein (Ter protein) FGM04_20980 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family FGM04_20985 PF01464 Transglycosylase SLT domain FGM04_20985 PF01476 LysM domain FGM04_20990 PF00753 Metallo-beta-lactamase superfamily FGM04_20990 PF16123 Hydroxyacylglutathione hydrolase C-terminus FGM04_20995 PF08241 Methyltransferase domain FGM04_21000 PF00075 RNase H FGM04_21005 PF00929 Exonuclease FGM04_21015 PF11849 Domain of unknown function (DUF3369) FGM04_21020 PF08021 Siderophore-interacting FAD-binding domain FGM04_21020 PF04954 Siderophore-interacting protein FGM04_21025 PF07715 TonB-dependent Receptor Plug Domain FGM04_21025 PF00593 TonB dependent receptor FGM04_21030 PF01032 FecCD transport family FGM04_21035 PF01032 FecCD transport family FGM04_21040 PF00005 ABC transporter FGM04_21055 PF00873 AcrB/AcrD/AcrF family FGM04_21060 PF00529 HlyD membrane-fusion protein of T1SS FGM04_21060 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_21075 PF00873 AcrB/AcrD/AcrF family FGM04_21080 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion FGM04_21085 PF03372 Endonuclease/Exonuclease/phosphatase family FGM04_21100 PF02424 ApbE family FGM04_21105 PF00127 Copper binding proteins, plastocyanin/azurin family FGM04_21115 PF04337 Protein of unknown function, DUF480 FGM04_21120 PF00563 EAL domain FGM04_21120 PF13188 PAS domain FGM04_21120 PF03707 Bacterial signalling protein N terminal repeat FGM04_21120 PF00990 Diguanylate cyclase, GGDEF domain FGM04_21130 PF13683 Integrase core domain FGM04_21130 PF13276 HTH-like domain FGM04_21140 PF04325 Protein of unknown function (DUF465) FGM04_21150 PF01554 MatE FGM04_21175 PF00465 Iron-containing alcohol dehydrogenase FGM04_21185 PF08359 YsiA-like protein, C-terminal region FGM04_21185 PF00440 Bacterial regulatory proteins, tetR family FGM04_21190 PF00171 Aldehyde dehydrogenase family FGM04_21200 PF01156 Inosine-uridine preferring nucleoside hydrolase FGM04_21210 PF13442 Cytochrome C oxidase, cbb3-type, subunit III FGM04_21210 PF00034 Cytochrome c FGM04_21220 PF05656 Protein of unknown function (DUF805) FGM04_21240 PF00672 HAMP domain FGM04_21240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain FGM04_21245 PF01238 Phosphomannose isomerase type I FGM04_21250 PF12833 Helix-turn-helix domain FGM04_21255 PF00180 Isocitrate/isopropylmalate dehydrogenase FGM04_21265 PF00291 Pyridoxal-phosphate dependent enzyme FGM04_21270 PF02447 GntP family permease FGM04_21275 PF03466 LysR substrate binding domain FGM04_21275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_21285 PF00877 NlpC/P60 family FGM04_21290 PF03466 LysR substrate binding domain FGM04_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family FGM04_21295 PF00578 AhpC/TSA family FGM04_21295 PF10417 C-terminal domain of 1-Cys peroxiredoxin FGM04_21315 PF08003 Protein of unknown function (DUF1698) FGM04_21320 PF13649 Methyltransferase domain FGM04_21325 PF01904 Protein of unknown function DUF72 FGM04_21335 PF01336 OB-fold nucleic acid binding domain FGM04_21335 PF00152 tRNA synthetases class II (D, K and N) FGM04_21335 PF02938 GAD domain FGM04_21340 PF01709 Transcriptional regulator FGM04_21450 PF01751 Toprim domain FGM04_21450 PF01131 DNA topoisomerase FGM04_21495 PF06613 KorB C-terminal beta-barrel domain FGM04_21495 PF02195 ParB-like nuclease domain FGM04_21495 PF08535 KorB domain FGM04_21500 PF13614 AAA domain FGM04_21555 PF01434 Peptidase family M41 FGM04_21555 PF17862 AAA+ lid domain FGM04_21555 PF00004 ATPase family associated with various cellular activities (AAA) FGM04_21570 PF00216 Bacterial DNA-binding protein FGM04_21575 PF00565 Staphylococcal nuclease homologue FGM04_21635 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin FGM04_21785 PF06122 Conjugative relaxosome accessory transposon protein FGM04_21825 PF04851 Type III restriction enzyme, res subunit FGM04_21825 PF08774 VRR-NUC domain FGM04_21840 PF18273 Type III R-M EcoP15I C-terminal domain FGM04_21840 PF01555 DNA methylase FGM04_21850 PF00005 ABC transporter FGM04_21875 PF07804 HipA-like C-terminal domain FGM04_21875 PF13657 HipA N-terminal domain FGM04_21880 PF01381 Helix-turn-helix FGM04_21885 PF02899 Phage integrase, N-terminal SAM-like domain FGM04_21885 PF00589 Phage integrase family FGM04_22025 PF00111 2Fe-2S iron-sulfur cluster binding domain FGM04_22090 PF07728 AAA domain (dynein-related subfamily) FGM04_22090 PF08406 CbbQ/NirQ/NorQ C-terminal FGM04_22145 PF06986 Type-1V conjugative transfer system mating pair stabilisation FGM04_22150 PF06834 TraU protein FGM04_22160 PF12477 Sex factor F TraW protein N terminal FGM04_22180 PF10411 Disulfide bond isomerase protein N-terminus FGM04_22180 PF13098 Thioredoxin-like domain