locus-tag class description M001_000005 PF00308 Bacterial dnaA protein M001_000005 PF08299 Bacterial dnaA protein helix-turn-helix M001_000005 PF11638 DnaA N-terminal domain M001_000010 PF02768 DNA polymerase III beta subunit, C-terminal domain M001_000010 PF00712 DNA polymerase III beta subunit, N-terminal domain M001_000010 PF02767 DNA polymerase III beta subunit, central domain M001_000015 PF02463 RecF/RecN/SMC N terminal domain M001_000020 PF00986 DNA gyrase B subunit, carboxyl terminus M001_000020 PF00204 DNA gyrase B M001_000020 PF18053 DNA gyrase B subunit insert domain M001_000020 PF01751 Toprim domain M001_000020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_000030 PF08279 HTH domain M001_000030 PF13280 WYL domain M001_000035 PF12833 Helix-turn-helix domain M001_000035 PF02311 AraC-like ligand binding domain M001_000040 PF12706 Beta-lactamase superfamily domain M001_000045 PF00011 Hsp20/alpha crystallin family M001_000050 PF00011 Hsp20/alpha crystallin family M001_000055 PF00155 Aminotransferase class I and II M001_000070 PF07690 Major Facilitator Superfamily M001_000075 PF00072 Response regulator receiver domain M001_000075 PF00486 Transcriptional regulatory protein, C terminal M001_000080 PF02702 Osmosensitive K+ channel His kinase sensor domain M001_000080 PF00512 His Kinase A (phospho-acceptor) domain M001_000080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_000080 PF13492 GAF domain M001_000080 PF13493 Domain of unknown function (DUF4118) M001_000085 PF02669 K+-transporting ATPase, c chain M001_000095 PF03814 Potassium-transporting ATPase A subunit M001_000100 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_000100 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M001_000105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_000105 PF00512 His Kinase A (phospho-acceptor) domain M001_000105 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_000110 PF00873 AcrB/AcrD/AcrF family M001_000115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_000120 PF00440 Bacterial regulatory proteins, tetR family M001_000155 PF12146 Serine aminopeptidase, S33 M001_000160 PF00132 Bacterial transferase hexapeptide (six repeats) M001_000165 PF00588 SpoU rRNA Methylase family M001_000165 PF12105 SpoU, rRNA methylase, C-terminal M001_000170 PF04607 Region found in RelA / SpoT proteins M001_000170 PF13291 ACT domain M001_000170 PF02824 TGS domain M001_000175 PF01192 RNA polymerase Rpb6 M001_000180 PF00625 Guanylate kinase M001_000185 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M001_000200 PF00892 EamA-like transporter family M001_000220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_000220 PF03466 LysR substrate binding domain M001_000225 PF00579 tRNA synthetases class I (W and Y) M001_000230 PF00582 Universal stress protein family M001_000235 PF07055 Enoyl reductase FAD binding domain M001_000235 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M001_000235 PF12241 Trans-2-enoyl-CoA reductase catalytic region M001_000240 PF00210 Ferritin-like domain M001_000250 PF07694 5TMR of 5TMR-LYT M001_000250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_000250 PF06580 Histidine kinase M001_000255 PF04397 LytTr DNA-binding domain M001_000255 PF00072 Response regulator receiver domain M001_000260 PF07690 Major Facilitator Superfamily M001_000285 PF13533 Biotin-lipoyl like M001_000295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_000300 PF02222 ATP-grasp domain M001_000300 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M001_000305 PF00731 AIR carboxylase M001_000320 PF03466 LysR substrate binding domain M001_000320 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_000325 PF00593 TonB dependent receptor M001_000325 PF07715 TonB-dependent Receptor Plug Domain M001_000330 PF01177 Asp/Glu/Hydantoin racemase M001_000365 PF00899 ThiF family M001_000370 PF02657 Fe-S metabolism associated domain M001_000375 PF00266 Aminotransferase class-V M001_000380 PF13361 UvrD-like helicase C-terminal domain M001_000380 PF00580 UvrD/REP helicase N-terminal domain M001_000385 PF00563 EAL domain M001_000385 PF00990 Diguanylate cyclase, GGDEF domain M001_000385 PF03707 Bacterial signalling protein N terminal repeat M001_000390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M001_000395 PF00107 Zinc-binding dehydrogenase M001_000395 PF08240 Alcohol dehydrogenase GroES-like domain M001_000400 PF00155 Aminotransferase class I and II M001_000405 PF08360 QacR-like protein, C-terminal region M001_000405 PF00440 Bacterial regulatory proteins, tetR family M001_000410 PF01370 NAD dependent epimerase/dehydratase family M001_000415 PF00534 Glycosyl transferases group 1 M001_000425 PF04932 O-Antigen ligase M001_000430 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) M001_000460 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M001_000460 PF12833 Helix-turn-helix domain M001_000465 PF01810 LysE type translocator M001_000490 PF14001 YdfZ protein M001_000500 PF13614 AAA domain M001_000510 PF00580 UvrD/REP helicase N-terminal domain M001_000510 PF13361 UvrD-like helicase C-terminal domain M001_000535 PF00149 Calcineurin-like phosphoesterase M001_000535 PF02872 5'-nucleotidase, C-terminal domain M001_000545 PF00571 CBS domain M001_000545 PF01769 Divalent cation transporter M001_000545 PF03448 MgtE intracellular N domain M001_000550 PF10414 Sirohaem synthase dimerisation region M001_000550 PF14824 Sirohaem biosynthesis protein central M001_000550 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M001_000555 PF01226 Formate/nitrite transporter M001_000560 PF13806 Rieske-like [2Fe-2S] domain M001_000565 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_000565 PF04324 BFD-like [2Fe-2S] binding domain M001_000565 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M001_000565 PF18267 Rubredoxin NAD+ reductase C-terminal domain M001_000565 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M001_000570 PF10431 C-terminal, D2-small domain, of ClpB protein M001_000570 PF07724 AAA domain (Cdc48 subfamily) M001_000570 PF00004 ATPase family associated with various cellular activities (AAA) M001_000575 PF00227 Proteasome subunit M001_000585 PF00750 tRNA synthetases class I (R) M001_000585 PF05746 DALR anticodon binding domain M001_000585 PF03485 Arginyl tRNA synthetase N terminal domain M001_000595 PF04545 Sigma-70, region 4 M001_000595 PF04542 Sigma-70 region 2 M001_000605 PF02673 Bacitracin resistance protein BacA M001_000610 PF01263 Aldose 1-epimerase M001_000615 PF00288 GHMP kinases N terminal domain M001_000615 PF08544 GHMP kinases C terminal M001_000615 PF10509 Galactokinase galactose-binding signature M001_000620 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain M001_000620 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain M001_000625 PF16363 GDP-mannose 4,6 dehydratase M001_000630 PF00356 Bacterial regulatory proteins, lacI family M001_000635 PF16353 Domain of unknown function(DUF4981) M001_000635 PF02929 Beta galactosidase small chain M001_000635 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M001_000635 PF02837 Glycosyl hydrolases family 2, sugar binding domain M001_000635 PF00703 Glycosyl hydrolases family 2 M001_000640 PF13407 Periplasmic binding protein domain M001_000645 PF00005 ABC transporter M001_000650 PF02653 Branched-chain amino acid transport system / permease component M001_000655 PF02743 Cache domain M001_000655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_000655 PF00672 HAMP domain M001_000660 PF05958 tRNA (Uracil-5-)-methyltransferase M001_000675 PF02903 Alpha amylase, N-terminal ig-like domain M001_000675 PF00128 Alpha amylase, catalytic domain M001_000690 PF00012 Hsp70 protein M001_000695 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M001_000695 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_000700 PF05981 CreA protein M001_000715 PF01258 Prokaryotic dksA/traR C4-type zinc finger M001_000720 PF00120 Glutamine synthetase, catalytic domain M001_000725 PF00202 Aminotransferase class-III M001_000730 PF13416 Bacterial extracellular solute-binding protein M001_000735 PF13416 Bacterial extracellular solute-binding protein M001_000740 PF00005 ABC transporter M001_000740 PF08402 TOBE domain M001_000745 PF00528 Binding-protein-dependent transport system inner membrane component M001_000750 PF00528 Binding-protein-dependent transport system inner membrane component M001_000755 PF03475 3-alpha domain M001_000755 PF03473 MOSC domain M001_000770 PF03061 Thioesterase superfamily M001_000775 PF00270 DEAD/DEAH box helicase M001_000775 PF00271 Helicase conserved C-terminal domain M001_000775 PF16124 RecQ zinc-binding M001_000775 PF09382 RQC domain M001_000775 PF00570 HRDC domain M001_000780 PF00034 Cytochrome c M001_000785 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M001_000795 PF02592 Putative vitamin uptake transporter M001_000800 PF03737 Aldolase/RraA M001_000805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_000805 PF00672 HAMP domain M001_000815 PF01197 Ribosomal protein L31 M001_000820 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M001_000820 PF18074 Primosomal protein N C-terminal domain M001_000820 PF17764 3′ DNA-binding domain (3′BD) M001_000820 PF00270 DEAD/DEAH box helicase M001_000820 PF00271 Helicase conserved C-terminal domain M001_000830 PF13460 NAD(P)H-binding M001_000830 PF11066 Protein of unknown function (DUF2867) M001_000835 PF03222 Tryptophan/tyrosine permease family M001_000840 PF03949 Malic enzyme, NAD binding domain M001_000840 PF00390 Malic enzyme, N-terminal domain M001_000845 PF03631 Virulence factor BrkB M001_000850 PF02580 D-Tyr-tRNA(Tyr) deacylase M001_000855 PF17284 Spermidine synthase tetramerisation domain M001_000860 PF00583 Acetyltransferase (GNAT) family M001_000860 PF09500 Putative thioesterase (yiiD_Cterm) M001_000870 PF17191 RecG wedge domain M001_000870 PF00271 Helicase conserved C-terminal domain M001_000870 PF00270 DEAD/DEAH box helicase M001_000875 PF13091 PLD-like domain M001_000880 PF02447 GntP family permease M001_000885 PF01202 Shikimate kinase M001_000890 PF00920 Dehydratase family M001_000895 PF01081 KDPG and KHG aldolase M001_000900 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M001_000900 PF00356 Bacterial regulatory proteins, lacI family M001_000910 PF01551 Peptidase family M23 M001_000915 PF01676 Metalloenzyme superfamily M001_000915 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M001_000920 PF00581 Rhodanese-like domain M001_000925 PF02556 Preprotein translocase subunit SecB M001_000930 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M001_000930 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M001_000935 PF01521 Iron-sulphur cluster biosynthesis M001_000935 PF01106 NifU-like domain M001_000940 PF00156 Phosphoribosyl transferase domain M001_000945 PF00561 alpha/beta hydrolase fold M001_000965 PF16921 Tex protein YqgF-like domain M001_000965 PF09371 Tex-like protein N-terminal domain M001_000965 PF00575 S1 RNA binding domain M001_000965 PF17674 HHH domain M001_000970 PF01272 Transcription elongation factor, GreA/GreB, C-term M001_000970 PF03449 Transcription elongation factor, N-terminal M001_000975 PF00072 Response regulator receiver domain M001_000975 PF00486 Transcriptional regulatory protein, C terminal M001_000980 PF00672 HAMP domain M001_000980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_000980 PF00512 His Kinase A (phospho-acceptor) domain M001_000990 PF00338 Ribosomal protein S10p/S20e M001_000995 PF00297 Ribosomal protein L3 M001_001000 PF00573 Ribosomal protein L4/L1 family M001_001005 PF00276 Ribosomal protein L23 M001_001010 PF00181 Ribosomal Proteins L2, RNA binding domain M001_001010 PF03947 Ribosomal Proteins L2, C-terminal domain M001_001015 PF00203 Ribosomal protein S19 M001_001020 PF00237 Ribosomal protein L22p/L17e M001_001025 PF07650 KH domain M001_001025 PF00189 Ribosomal protein S3, C-terminal domain M001_001030 PF00252 Ribosomal protein L16p/L10e M001_001035 PF00831 Ribosomal L29 protein M001_001040 PF00366 Ribosomal protein S17 M001_001045 PF00238 Ribosomal protein L14p/L23e M001_001050 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M001_001050 PF00467 KOW motif M001_001055 PF00281 Ribosomal protein L5 M001_001055 PF00673 ribosomal L5P family C-terminus M001_001060 PF00253 Ribosomal protein S14p/S29e M001_001065 PF00410 Ribosomal protein S8 M001_001070 PF00347 Ribosomal protein L6 M001_001075 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M001_001080 PF03719 Ribosomal protein S5, C-terminal domain M001_001080 PF00333 Ribosomal protein S5, N-terminal domain M001_001085 PF00327 Ribosomal protein L30p/L7e M001_001090 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M001_001095 PF00344 SecY translocase M001_001100 PF00444 Ribosomal protein L36 M001_001105 PF00416 Ribosomal protein S13/S18 M001_001110 PF00411 Ribosomal protein S11 M001_001115 PF00163 Ribosomal protein S4/S9 N-terminal domain M001_001115 PF01479 S4 domain M001_001120 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M001_001120 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M001_001120 PF01000 RNA polymerase Rpb3/RpoA insert domain M001_001125 PF01196 Ribosomal protein L17 M001_001165 PF00593 TonB dependent receptor M001_001165 PF07715 TonB-dependent Receptor Plug Domain M001_001170 PF00990 Diguanylate cyclase, GGDEF domain M001_001170 PF17151 Periplasmic sensor domain M001_001175 PF00512 His Kinase A (phospho-acceptor) domain M001_001175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_001175 PF00672 HAMP domain M001_001180 PF00486 Transcriptional regulatory protein, C terminal M001_001180 PF00072 Response regulator receiver domain M001_001195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_001195 PF03466 LysR substrate binding domain M001_001205 PF02678 Pirin M001_001205 PF17954 Quercetinase C-terminal cupin domain M001_001210 PF07681 DoxX M001_001215 PF17946 RecC C-terminal domain M001_001220 PF00580 UvrD/REP helicase N-terminal domain M001_001220 PF12705 PD-(D/E)XK nuclease superfamily M001_001220 PF13361 UvrD-like helicase C-terminal domain M001_001225 PF13538 UvrD-like helicase C-terminal domain M001_001240 PF08448 PAS fold M001_001240 PF00990 Diguanylate cyclase, GGDEF domain M001_001255 PF00392 Bacterial regulatory proteins, gntR family M001_001255 PF07702 UTRA domain M001_001270 PF00528 Binding-protein-dependent transport system inner membrane component M001_001280 PF08402 TOBE domain M001_001280 PF00005 ABC transporter M001_001290 PF00990 Diguanylate cyclase, GGDEF domain M001_001310 PF01053 Cys/Met metabolism PLP-dependent enzyme M001_001320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_001320 PF12793 Sugar transport-related sRNA regulator N-term M001_001325 PF00141 Peroxidase M001_001340 PF03280 Proteobacterial lipase chaperone protein M001_001345 PF00561 alpha/beta hydrolase fold M001_001350 PF00579 tRNA synthetases class I (W and Y) M001_001350 PF01479 S4 domain M001_001355 PF00196 Bacterial regulatory proteins, luxR family M001_001375 PF06628 Catalase-related immune-responsive M001_001375 PF00199 Catalase M001_001400 PF08264 Anticodon-binding domain of tRNA M001_001400 PF00133 tRNA synthetases class I (I, L, M and V) M001_001400 PF10458 Valyl tRNA synthetase tRNA binding arm M001_001410 PF02789 Cytosol aminopeptidase family, N-terminal domain M001_001410 PF00883 Cytosol aminopeptidase family, catalytic domain M001_001415 PF03739 Lipopolysaccharide export system permease LptF/LptG M001_001420 PF03739 Lipopolysaccharide export system permease LptF/LptG M001_001440 PF00593 TonB dependent receptor M001_001440 PF07715 TonB-dependent Receptor Plug Domain M001_001450 PF00768 D-alanyl-D-alanine carboxypeptidase M001_001455 PF13520 Amino acid permease M001_001475 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M001_001490 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase M001_001495 PF02602 Uroporphyrinogen-III synthase HemD M001_001500 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M001_001500 PF03900 Porphobilinogen deaminase, C-terminal domain M001_001505 PF01295 Adenylate cyclase, class-I M001_001505 PF12633 Adenylate cyclase NT domain M001_001510 PF02230 Phospholipase/Carboxylesterase M001_001515 PF01491 Frataxin-like domain M001_001525 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M001_001525 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M001_001530 PF01678 Diaminopimelate epimerase M001_001540 PF02899 Phage integrase, N-terminal SAM-like domain M001_001540 PF00589 Phage integrase family M001_001545 PF13419 Haloacid dehalogenase-like hydrolase M001_001555 PF13545 Crp-like helix-turn-helix domain M001_001555 PF00027 Cyclic nucleotide-binding domain M001_001565 PF07722 Peptidase C26 M001_001570 PF04751 Protein of unknown function (DUF615) M001_001575 PF01523 Putative modulator of DNA gyrase M001_001580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M001_001585 PF01722 BolA-like protein M001_001595 PF05494 MlaC protein M001_001600 PF02470 MlaD protein M001_001605 PF02405 Permease MlaE M001_001610 PF00005 ABC transporter M001_001615 PF00571 CBS domain M001_001615 PF01380 SIS domain M001_001625 PF06835 Lipopolysaccharide-assembly, LptC-related M001_001630 PF03968 OstA-like protein M001_001635 PF00005 ABC transporter M001_001635 PF12399 Branched-chain amino acid ATP-binding cassette transporter M001_001640 PF00309 Sigma-54 factor, Activator interacting domain (AID) M001_001640 PF04963 Sigma-54 factor, core binding domain M001_001640 PF04552 Sigma-54, DNA binding domain M001_001645 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M001_001650 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_001655 PF03668 P-loop ATPase protein family M001_001660 PF00381 PTS HPr component phosphorylation site M001_001665 PF08279 HTH domain M001_001665 PF00874 PRD domain M001_001665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_001665 PF05043 Mga helix-turn-helix domain M001_001670 PF07071 KDGP aldolase M001_001675 PF03841 L-seryl-tRNA selenium transferase M001_001680 PF01979 Amidohydrolase family M001_001710 PF13180 PDZ domain M001_001715 PF13180 PDZ domain M001_001715 PF00595 PDZ domain M001_001725 PF03969 AFG1-like ATPase M001_001730 PF00572 Ribosomal protein L13 M001_001735 PF00380 Ribosomal protein S9/S16 M001_001740 PF00355 Rieske [2Fe-2S] domain M001_001740 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal M001_001745 PF00032 Cytochrome b(C-terminal)/b6/petD M001_001745 PF00033 Cytochrome b/b6/petB M001_001750 PF02167 Cytochrome C1 family M001_001755 PF00043 Glutathione S-transferase, C-terminal domain M001_001755 PF02798 Glutathione S-transferase, N-terminal domain M001_001760 PF04386 Stringent starvation protein B M001_001765 PF04972 BON domain M001_001770 PF13580 SIS domain M001_001775 PF02021 Uncharacterised protein family UPF0102 M001_001780 PF04348 LppC putative lipoprotein M001_001785 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M001_001800 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M001_001805 PF00813 FliP family M001_001810 PF01313 Bacterial export proteins, family 3 M001_001815 PF01311 Bacterial export proteins, family 1 M001_001820 PF01312 FlhB HrpN YscU SpaS Family M001_001825 PF00771 FHIPEP family M001_001830 PF00072 Response regulator receiver domain M001_001830 PF02954 Bacterial regulatory protein, Fis family M001_001830 PF00158 Sigma-54 interaction domain M001_001835 PF02049 Flagellar hook-basal body complex protein FliE M001_001840 PF08345 Flagellar M-ring protein C-terminal M001_001840 PF01514 Secretory protein of YscJ/FliF family M001_001845 PF14841 FliG middle domain M001_001845 PF01706 FliG C-terminal domain M001_001845 PF14842 FliG N-terminal domain M001_001855 PF18269 T3SS EscN ATPase C-terminal domain M001_001855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_001880 PF00460 Flagella basal body rod protein M001_001885 PF00460 Flagella basal body rod protein M001_001885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_001890 PF13860 FlgD Ig-like domain M001_001890 PF13861 FlgD Tudor-like domain M001_001890 PF03963 Flagellar hook capping protein - N-terminal region M001_001895 PF07559 Flagellar basal body protein FlaE M001_001895 PF00460 Flagella basal body rod protein M001_001895 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_001900 PF00460 Flagella basal body rod protein M001_001900 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_001905 PF00460 Flagella basal body rod protein M001_001905 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_001910 PF02107 Flagellar L-ring protein M001_001915 PF02119 Flagellar P-ring protein M001_001925 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_001925 PF00460 Flagella basal body rod protein M001_001930 PF00669 Bacterial flagellin N-terminal helical region M001_001950 PF00669 Bacterial flagellin N-terminal helical region M001_001950 PF00700 Bacterial flagellin C-terminal helical region M001_001955 PF00669 Bacterial flagellin N-terminal helical region M001_001955 PF00700 Bacterial flagellin C-terminal helical region M001_001960 PF07196 Flagellin hook IN motif M001_001960 PF07195 Flagellar hook-associated protein 2 C-terminus M001_001960 PF02465 Flagellar hook-associated protein 2 N-terminus M001_001965 PF02561 Flagellar protein FliS M001_001985 PF04545 Sigma-70, region 4 M001_001985 PF04542 Sigma-70 region 2 M001_001990 PF01618 MotA/TolQ/ExbB proton channel family M001_001995 PF13677 Membrane MotB of proton-channel complex MotA/MotB M001_001995 PF00691 OmpA family M001_002005 PF01464 Transglycosylase SLT domain M001_002005 PF01476 LysM domain M001_002010 PF02381 MraZ protein, putative antitoxin-like M001_002015 PF01795 MraW methylase family M001_002020 PF04999 Cell division protein FtsL M001_002025 PF00905 Penicillin binding protein transpeptidase domain M001_002025 PF03717 Penicillin-binding Protein dimerisation domain M001_002030 PF08245 Mur ligase middle domain M001_002030 PF02875 Mur ligase family, glutamate ligase domain M001_002030 PF01225 Mur ligase family, catalytic domain M001_002035 PF01225 Mur ligase family, catalytic domain M001_002035 PF08245 Mur ligase middle domain M001_002035 PF02875 Mur ligase family, glutamate ligase domain M001_002040 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 M001_002040 PF00953 Glycosyl transferase family 4 M001_002045 PF02875 Mur ligase family, glutamate ligase domain M001_002045 PF08245 Mur ligase middle domain M001_002050 PF01098 Cell cycle protein M001_002055 PF04101 Glycosyltransferase family 28 C-terminal domain M001_002055 PF03033 Glycosyltransferase family 28 N-terminal domain M001_002060 PF08245 Mur ligase middle domain M001_002060 PF01225 Mur ligase family, catalytic domain M001_002060 PF02875 Mur ligase family, glutamate ligase domain M001_002065 PF08478 POTRA domain, FtsQ-type M001_002065 PF03799 Cell division protein FtsQ M001_002070 PF02491 SHS2 domain inserted in FTSA M001_002075 PF12327 FtsZ family, C-terminal domain M001_002075 PF00091 Tubulin/FtsZ family, GTPase domain M001_002080 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase M001_002090 PF02810 SEC-C motif M001_002090 PF01043 SecA preprotein cross-linking domain M001_002090 PF07517 SecA DEAD-like domain M001_002090 PF07516 SecA Wing and Scaffold domain M001_002095 PF00293 NUDIX domain M001_002100 PF03884 DNA gyrase inhibitor YacG M001_002105 PF07072 Cell division protein M001_002110 PF01121 Dephospho-CoA kinase M001_002115 PF06750 Bacterial Peptidase A24 N-terminal domain M001_002115 PF01478 Type IV leader peptidase family M001_002120 PF00482 Type II secretion system (T2SS), protein F M001_002125 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M001_002125 PF00437 Type II/IV secretion system protein M001_002130 PF07963 Prokaryotic N-terminal methylation motif M001_002135 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M001_002135 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M001_002145 PF01510 N-acetylmuramoyl-L-alanine amidase M001_002150 PF00392 Bacterial regulatory proteins, gntR family M001_002150 PF07729 FCD domain M001_002155 PF00456 Transketolase, thiamine diphosphate binding domain M001_002155 PF17831 Pyruvate dehydrogenase E1 component middle domain M001_002160 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M001_002160 PF00364 Biotin-requiring enzyme M001_002160 PF02817 e3 binding domain M001_002165 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M001_002165 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_002170 PF00563 EAL domain M001_002170 PF03707 Bacterial signalling protein N terminal repeat M001_002170 PF00990 Diguanylate cyclase, GGDEF domain M001_002175 PF12729 Four helix bundle sensory module for signal transduction M001_002175 PF00672 HAMP domain M001_002175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_002180 PF01734 Patatin-like phospholipase M001_002185 PF00330 Aconitase family (aconitate hydratase) M001_002185 PF11791 Aconitate B N-terminal domain M001_002185 PF06434 Aconitate hydratase 2 N-terminus M001_002190 PF00563 EAL domain M001_002190 PF12792 CSS motif domain associated with EAL M001_002200 PF07683 Cobalamin synthesis protein cobW C-terminal domain M001_002200 PF02492 CobW/HypB/UreG, nucleotide-binding domain M001_002205 PF00873 AcrB/AcrD/AcrF family M001_002220 PF07690 Major Facilitator Superfamily M001_002230 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M001_002235 PF02152 Dihydroneopterin aldolase M001_002240 PF02660 Glycerol-3-phosphate acyltransferase M001_002290 PF00206 Lyase M001_002290 PF14698 Argininosuccinate lyase C-terminal M001_002295 PF00764 Arginosuccinate synthase M001_002300 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M001_002300 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M001_002305 PF00696 Amino acid kinase family M001_002310 PF02774 Semialdehyde dehydrogenase, dimerisation domain M001_002310 PF01118 Semialdehyde dehydrogenase, NAD binding domain M001_002315 PF07687 Peptidase dimerisation domain M001_002315 PF01546 Peptidase family M20/M25/M40 M001_002320 PF00311 Phosphoenolpyruvate carboxylase M001_002330 PF04073 Aminoacyl-tRNA editing domain M001_002345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_002345 PF03466 LysR substrate binding domain M001_002350 PF03788 LrgA family M001_002355 PF04172 LrgB-like family M001_002365 PF01734 Patatin-like phospholipase M001_002370 PF05192 MutS domain III M001_002370 PF00488 MutS domain V M001_002370 PF05188 MutS domain II M001_002370 PF01624 MutS domain I M001_002370 PF05190 MutS family domain IV M001_002375 PF02464 Competence-damaged protein M001_002380 PF00154 recA bacterial DNA recombination protein M001_002385 PF02631 RecX family M001_002390 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M001_002390 PF02272 DHHA1 domain M001_002390 PF01411 tRNA synthetases class II (A) M001_002395 PF01842 ACT domain M001_002395 PF13840 ACT domain M001_002395 PF00696 Amino acid kinase family M001_002400 PF02599 Global regulator protein family M001_002435 PF00768 D-alanyl-D-alanine carboxypeptidase M001_002440 PF09335 SNARE associated Golgi protein M001_002445 PF00571 CBS domain M001_002445 PF01595 Cyclin M transmembrane N-terminal domain M001_002445 PF03471 Transporter associated domain M001_002455 PF17763 Glutaminase/Asparaginase C-terminal domain M001_002455 PF00710 Asparaginase, N-terminal M001_002470 PF00356 Bacterial regulatory proteins, lacI family M001_002475 PF00367 phosphotransferase system, EIIB M001_002475 PF02378 Phosphotransferase system, EIIC M001_002480 PF11941 Domain of unknown function (DUF3459) M001_002480 PF00128 Alpha amylase, catalytic domain M001_002485 PF14602 Hexapeptide repeat of succinyl-transferase M001_002485 PF12464 Maltose acetyltransferase M001_002495 PF00849 RNA pseudouridylate synthase M001_002500 PF00271 Helicase conserved C-terminal domain M001_002500 PF12137 RNA polymerase recycling family C-terminal M001_002500 PF00176 SNF2 family N-terminal domain M001_002500 PF18339 RapA N-terminal Tudor like domain 1 M001_002500 PF18337 RapA N-terminal Tudor like domain M001_002530 PF06965 Na+/H+ antiporter 1 M001_002530 PF13462 Thioredoxin M001_002545 PF00202 Aminotransferase class-III M001_002550 PF00654 Voltage gated chloride channel M001_002560 PF01521 Iron-sulphur cluster biosynthesis M001_002565 PF03553 Na+/H+ antiporter family M001_002605 PF00534 Glycosyl transferases group 1 M001_002605 PF08323 Starch synthase catalytic domain M001_002610 PF00483 Nucleotidyl transferase M001_002615 PF05175 Methyltransferase small domain M001_002615 PF08468 Methyltransferase small domain N-terminal M001_002620 PF00701 Dihydrodipicolinate synthetase family M001_002630 PF01865 Protein of unknown function DUF47 M001_002635 PF01384 Phosphate transporter family M001_002640 PF00696 Amino acid kinase family M001_002640 PF03447 Homoserine dehydrogenase, NAD binding domain M001_002640 PF00742 Homoserine dehydrogenase M001_002645 PF01053 Cys/Met metabolism PLP-dependent enzyme M001_002650 PF01340 Met Apo-repressor, MetJ M001_002655 PF12833 Helix-turn-helix domain M001_002655 PF02311 AraC-like ligand binding domain M001_002660 PF01588 Putative tRNA binding domain M001_002665 PF03222 Tryptophan/tyrosine permease family M001_002670 PF00459 Inositol monophosphatase family M001_002675 PF00293 NUDIX domain M001_002680 PF13419 Haloacid dehalogenase-like hydrolase M001_002695 PF14602 Hexapeptide repeat of succinyl-transferase M001_002695 PF12464 Maltose acetyltransferase M001_002700 PF13194 Domain of unknown function (DUF4010) M001_002705 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M001_002705 PF18416 N-acetylglucosamine binding protein domain 2 M001_002710 PF12729 Four helix bundle sensory module for signal transduction M001_002710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_002710 PF00672 HAMP domain M001_002720 PF02350 UDP-N-acetylglucosamine 2-epimerase M001_002725 PF13632 Glycosyl transferase family group 2 M001_002725 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M001_002730 PF13283 Bacteriophage N adsorption protein A C-term M001_002735 PF14488 Domain of unknown function (DUF4434) M001_002745 PF01522 Polysaccharide deacetylase M001_002745 PF14883 Hypothetical glycosyl hydrolase family 13 M001_002750 PF00535 Glycosyl transferase family 2 M001_002785 PF11230 Protein of unknown function (DUF3029) M001_002790 PF04055 Radical SAM superfamily M001_002800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_002800 PF03466 LysR substrate binding domain M001_002805 PF00155 Aminotransferase class I and II M001_002810 PF02583 Metal-sensitive transcriptional repressor M001_002825 PF17967 Pullulanase N2 domain M001_002825 PF11852 Domain of unknown function (DUF3372) M001_002825 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M001_002825 PF03714 Bacterial pullanase-associated domain M001_002825 PF18494 Pullulanase Ins domain M001_002830 PF00403 Heavy-metal-associated domain M001_002835 PF08534 Redoxin M001_002845 PF00271 Helicase conserved C-terminal domain M001_002845 PF00270 DEAD/DEAH box helicase M001_002855 PF03372 Endonuclease/Exonuclease/phosphatase family M001_002875 PF06062 Uncharacterised protein family (UPF0231) M001_002880 PF13556 PucR C-terminal helix-turn-helix domain M001_002880 PF17853 GGDEF-like domain M001_002880 PF05651 Putative sugar diacid recognition M001_002885 PF02447 GntP family permease M001_002890 PF02595 Glycerate kinase family M001_002900 PF00255 Glutathione peroxidase M001_002905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_002905 PF03466 LysR substrate binding domain M001_002910 PF07670 Nucleoside recognition M001_002910 PF01773 Na+ dependent nucleoside transporter N-terminus M001_002910 PF07662 Na+ dependent nucleoside transporter C-terminus M001_002920 PF02594 Uncharacterised ACR, YggU family COG1872 M001_002925 PF02325 YGGT family M001_002930 PF03807 NADP oxidoreductase coenzyme F420-dependent M001_002930 PF14748 Pyrroline-5-carboxylate reductase dimerisation M001_002935 PF01168 Alanine racemase, N-terminal domain M001_002940 PF00437 Type II/IV secretion system protein M001_002945 PF00437 Type II/IV secretion system protein M001_002950 PF03883 Peroxide stress protein YaaA M001_002960 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M001_002960 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M001_002965 PF00472 RF-1 domain M001_002970 PF00543 Nitrogen regulatory protein P-II M001_002975 PF13416 Bacterial extracellular solute-binding protein M001_002985 PF08402 TOBE domain M001_002985 PF00005 ABC transporter M001_002990 PF04261 Dyp-type peroxidase family M001_002995 PF02863 Arginine repressor, C-terminal domain M001_002995 PF01316 Arginine repressor, DNA binding domain M001_003000 PF00005 ABC transporter M001_003005 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_003010 PF00528 Binding-protein-dependent transport system inner membrane component M001_003015 PF00528 Binding-protein-dependent transport system inner membrane component M001_003020 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M001_003020 PF00056 lactate/malate dehydrogenase, NAD binding domain M001_003025 PF08238 Sel1 repeat M001_003030 PF00175 Oxidoreductase NAD-binding domain M001_003030 PF00970 Oxidoreductase FAD-binding domain M001_003030 PF00042 Globin M001_003035 PF02082 Transcriptional regulator M001_003040 PF01595 Cyclin M transmembrane N-terminal domain M001_003040 PF03471 Transporter associated domain M001_003040 PF00571 CBS domain M001_003045 PF01578 Cytochrome C assembly protein M001_003050 PF00448 SRP54-type protein, GTPase domain M001_003050 PF02978 Signal peptide binding domain M001_003050 PF02881 SRP54-type protein, helical bundle domain M001_003055 PF00886 Ribosomal protein S16 M001_003060 PF05239 PRC-barrel domain M001_003060 PF01782 RimM N-terminal domain M001_003065 PF01746 tRNA (Guanine-1)-methyltransferase M001_003070 PF01245 Ribosomal protein L19 M001_003080 PF02976 DNA mismatch repair enzyme MutH M001_003085 PF00293 NUDIX domain M001_003090 PF00391 PEP-utilising enzyme, mobile domain M001_003090 PF01590 GAF domain M001_003090 PF02896 PEP-utilising enzyme, TIM barrel domain M001_003090 PF05524 PEP-utilising enzyme, N-terminal M001_003095 PF01790 Prolipoprotein diacylglyceryl transferase M001_003100 PF00303 Thymidylate synthase M001_003105 PF06965 Na+/H+ antiporter 1 M001_003115 PF03466 LysR substrate binding domain M001_003115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_003120 PF01022 Bacterial regulatory protein, arsR family M001_003125 PF01649 Ribosomal protein S20 M001_003130 PF03023 Lipid II flippase MurJ M001_003135 PF01687 Riboflavin kinase M001_003135 PF06574 FAD synthetase M001_003140 PF06827 Zinc finger found in FPG and IleRS M001_003140 PF00133 tRNA synthetases class I (I, L, M and V) M001_003140 PF08264 Anticodon-binding domain of tRNA M001_003145 PF01252 Signal peptidase (SPase) II M001_003150 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_003155 PF02401 LytB protein M001_003160 PF07963 Prokaryotic N-terminal methylation motif M001_003160 PF00114 Pilin (bacterial filament) M001_003180 PF05567 Neisseria PilC beta-propeller domain M001_003195 PF00795 Carbon-nitrogen hydrolase M001_003195 PF02540 NAD synthase M001_003200 PF00543 Nitrogen regulatory protein P-II M001_003210 PF02664 S-Ribosylhomocysteinase (LuxS) M001_003220 PF07963 Prokaryotic N-terminal methylation motif M001_003220 PF00114 Pilin (bacterial filament) M001_003225 PF01026 TatD related DNase M001_003230 PF01773 Na+ dependent nucleoside transporter N-terminus M001_003230 PF07662 Na+ dependent nucleoside transporter C-terminus M001_003230 PF07670 Nucleoside recognition M001_003240 PF01791 DeoC/LacD family aldolase M001_003245 PF00591 Glycosyl transferase family, a/b domain M001_003245 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M001_003245 PF02885 Glycosyl transferase family, helical bundle domain M001_003250 PF01676 Metalloenzyme superfamily M001_003255 PF01048 Phosphorylase superfamily M001_003265 PF18429 Domain of unknown function (DUF5609) M001_003275 PF01609 Transposase DDE domain M001_003275 PF13006 Insertion element 4 transposase N-terminal M001_003285 PF18073 Rubredoxin metal binding domain M001_003290 PF07238 PilZ domain M001_003295 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ M001_003300 PF00216 Bacterial DNA-binding protein M001_003310 PF01411 tRNA synthetases class II (A) M001_003310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M001_003310 PF02272 DHHA1 domain M001_003315 PF01566 Natural resistance-associated macrophage protein M001_003320 PF01250 Ribosomal protein S6 M001_003325 PF01084 Ribosomal protein S18 M001_003330 PF03948 Ribosomal protein L9, C-terminal domain M001_003330 PF01281 Ribosomal protein L9, N-terminal domain M001_003335 PF00175 Oxidoreductase NAD-binding domain M001_003335 PF00970 Oxidoreductase FAD-binding domain M001_003360 PF00698 Acyl transferase domain M001_003360 PF08240 Alcohol dehydrogenase GroES-like domain M001_003360 PF14765 Polyketide synthase dehydratase M001_003360 PF00550 Phosphopantetheine attachment site M001_003360 PF08659 KR domain M001_003365 PF09335 SNARE associated Golgi protein M001_003370 PF05193 Peptidase M16 inactive domain M001_003370 PF00675 Insulinase (Peptidase family M16) M001_003375 PF04262 Glutamate-cysteine ligase M001_003380 PF00501 AMP-binding enzyme M001_003390 PF13673 Acetyltransferase (GNAT) domain M001_003390 PF00583 Acetyltransferase (GNAT) family M001_003400 PF07728 AAA domain (dynein-related subfamily) M001_003400 PF17868 AAA lid domain M001_003400 PF12592 Protein of unknown function (DUF3763) M001_003405 PF05762 VWA domain containing CoxE-like protein M001_003410 PF00990 Diguanylate cyclase, GGDEF domain M001_003410 PF00072 Response regulator receiver domain M001_003420 PF16658 Class II release factor RF3, C-terminal domain M001_003420 PF03144 Elongation factor Tu domain 2 M001_003420 PF00009 Elongation factor Tu GTP binding domain M001_003425 PF00583 Acetyltransferase (GNAT) family M001_003430 PF00583 Acetyltransferase (GNAT) family M001_003435 PF07690 Major Facilitator Superfamily M001_003440 PF03466 LysR substrate binding domain M001_003440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_003445 PF04151 Bacterial pre-peptidase C-terminal domain M001_003445 PF02868 Thermolysin metallopeptidase, alpha-helical domain M001_003445 PF01447 Thermolysin metallopeptidase, catalytic domain M001_003445 PF03413 Peptidase propeptide and YPEB domain M001_003445 PF07504 Fungalysin/Thermolysin Propeptide Motif M001_003450 PF13302 Acetyltransferase (GNAT) domain M001_003455 PF13302 Acetyltransferase (GNAT) domain M001_003465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M001_003465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M001_003470 PF07690 Major Facilitator Superfamily M001_003475 PF01725 Ham1 family M001_003480 PF04055 Radical SAM superfamily M001_003480 PF06969 HemN C-terminal domain M001_003485 PF03889 Alternative ribosome-rescue factor A M001_003490 PF13411 MerR HTH family regulatory protein M001_003495 PF02142 MGS-like domain M001_003495 PF01808 AICARFT/IMPCHase bienzyme M001_003500 PF02844 Phosphoribosylglycinamide synthetase, N domain M001_003500 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M001_003500 PF02843 Phosphoribosylglycinamide synthetase, C domain M001_003520 PF04546 Sigma-70, non-essential region M001_003520 PF00140 Sigma-70 factor, region 1.2 M001_003520 PF04542 Sigma-70 region 2 M001_003520 PF04539 Sigma-70 region 3 M001_003520 PF03979 Sigma-70 factor, region 1.1 M001_003520 PF04545 Sigma-70, region 4 M001_003525 PF10410 DnaB-helicase binding domain of primase M001_003525 PF08278 DNA primase DnaG DnaB-binding M001_003525 PF08275 DNA primase catalytic core, N-terminal domain M001_003525 PF01807 CHC2 zinc finger M001_003530 PF09424 Yqey-like protein M001_003535 PF01165 Ribosomal protein S21 M001_003540 PF00814 Glycoprotease family M001_003545 PF03605 Anaerobic c4-dicarboxylate membrane transporter M001_003550 PF00206 Lyase M001_003550 PF10415 Fumarase C C-terminus M001_003555 PF04186 FxsA cytoplasmic membrane protein M001_003560 PF01554 MatE M001_003565 PF00166 Chaperonin 10 Kd subunit M001_003570 PF00118 TCP-1/cpn60 chaperonin family M001_003580 PF00563 EAL domain M001_003580 PF00990 Diguanylate cyclase, GGDEF domain M001_003580 PF03707 Bacterial signalling protein N terminal repeat M001_003610 PF08343 Ribonucleotide reductase N-terminal M001_003610 PF02867 Ribonucleotide reductase, barrel domain M001_003610 PF00317 Ribonucleotide reductase, all-alpha domain M001_003620 PF02562 PhoH-like protein M001_003620 PF13638 PIN domain M001_003625 PF00005 ABC transporter M001_003630 PF00528 Binding-protein-dependent transport system inner membrane component M001_003650 PF00694 Aconitase C-terminal domain M001_003655 PF00330 Aconitase family (aconitate hydratase) M001_003660 PF00180 Isocitrate/isopropylmalate dehydrogenase M001_003665 PF00682 HMGL-like M001_003665 PF08502 LeuA allosteric (dimerisation) domain M001_003675 PF01569 PAP2 superfamily M001_003690 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_003690 PF00205 Thiamine pyrophosphate enzyme, central domain M001_003690 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M001_003695 PF10369 Small subunit of acetolactate synthase M001_003720 PF02954 Bacterial regulatory protein, Fis family M001_003725 PF01207 Dihydrouridine synthase (Dus) M001_003730 PF02321 Outer membrane efflux protein M001_003735 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_003765 PF00072 Response regulator receiver domain M001_003770 PF00854 POT family M001_003775 PF00483 Nucleotidyl transferase M001_003785 PF01515 Phosphate acetyl/butaryl transferase M001_003785 PF07085 DRTGG domain M001_003790 PF00871 Acetokinase family M001_003795 PF04217 Protein of unknown function, DUF412 M001_003800 PF03887 YfbU domain M001_003805 PF00578 AhpC/TSA family M001_003810 PF01842 ACT domain M001_003815 PF00701 Dihydrodipicolinate synthetase family M001_003820 PF06804 NlpB/DapX lipoprotein M001_003825 PF01259 SAICAR synthetase M001_003835 PF03466 LysR substrate binding domain M001_003835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_003840 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) M001_003860 PF00989 PAS fold M001_003860 PF18415 Histidine kinase receptor ArcB trans-membrane domain M001_003860 PF00512 His Kinase A (phospho-acceptor) domain M001_003860 PF00072 Response regulator receiver domain M001_003860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_003860 PF01627 Hpt domain M001_003865 PF13286 Phosphohydrolase-associated domain M001_003865 PF01966 HD domain M001_003875 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_003875 PF00672 HAMP domain M001_003880 PF02357 Transcription termination factor nusG M001_003885 PF03180 NLPA lipoprotein M001_003890 PF00528 Binding-protein-dependent transport system inner membrane component M001_003895 PF09383 NIL domain M001_003895 PF00005 ABC transporter M001_003905 PF00480 ROK family M001_003910 PF08331 Domain of unknown function (DUF1730) M001_003915 PF01256 Carbohydrate kinase M001_003915 PF03853 YjeF-related protein N-terminus M001_003920 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M001_003925 PF01520 N-acetylmuramoyl-L-alanine amidase M001_003930 PF08676 MutL C terminal dimerisation domain M001_003930 PF01119 DNA mismatch repair protein, C-terminal domain M001_003935 PF01119 DNA mismatch repair protein, C-terminal domain M001_003935 PF08676 MutL C terminal dimerisation domain M001_003945 PF17209 Hfq protein M001_003950 PF16360 GTP-binding GTPase Middle Region M001_003950 PF13167 GTP-binding GTPase N-terminal M001_003950 PF01926 50S ribosome-binding GTPase M001_003955 PF01145 SPFH domain / Band 7 family M001_003955 PF12221 Bacterial membrane protein N terminal M001_003960 PF01145 SPFH domain / Band 7 family M001_003965 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) M001_003970 PF00348 Polyprenyl synthetase M001_003975 PF00829 Ribosomal prokaryotic L21 protein M001_003980 PF01016 Ribosomal L27 protein M001_003985 PF01926 50S ribosome-binding GTPase M001_003985 PF01018 GTP1/OBG M001_004000 PF00296 Luciferase-like monooxygenase M001_004015 PF00149 Calcineurin-like phosphoesterase M001_004020 PF04379 ApaG domain M001_004025 PF00398 Ribosomal RNA adenine dimethylase M001_004030 PF04166 Pyridoxal phosphate biosynthetic protein PdxA M001_004035 PF00639 PPIC-type PPIASE domain M001_004035 PF09312 SurA N-terminal domain M001_004040 PF03968 OstA-like protein M001_004040 PF04453 LPS transport system D M001_004045 PF01636 Phosphotransferase enzyme family M001_004050 PF00483 Nucleotidyl transferase M001_004055 PF05099 Tellurite resistance protein TerB M001_004055 PF00226 DnaJ domain M001_004060 PF07687 Peptidase dimerisation domain M001_004060 PF01546 Peptidase family M20/M25/M40 M001_004065 PF00156 Phosphoribosyl transferase domain M001_004075 PF07417 Sigma factor-binding transcriptional regulator Crl M001_004080 PF00696 Amino acid kinase family M001_004080 PF01472 PUA domain M001_004085 PF00171 Aldehyde dehydrogenase family M001_004100 PF09905 DNA-binding protein VF530 M001_004105 PF02666 Phosphatidylserine decarboxylase M001_004110 PF03193 RsgA GTPase M001_004115 PF00929 Exonuclease M001_004155 PF00313 'Cold-shock' DNA-binding domain M001_004165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_004165 PF00672 HAMP domain M001_004170 PF00749 tRNA synthetases class I (E and Q), catalytic domain M001_004175 PF00860 Permease family M001_004185 PF00005 ABC transporter M001_004185 PF12848 ABC transporter M001_004200 PF01464 Transglycosylase SLT domain M001_004210 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) M001_004215 PF01370 NAD dependent epimerase/dehydratase family M001_004220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M001_004220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M001_004220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M001_004230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_004230 PF00005 ABC transporter M001_004235 PF00005 ABC transporter M001_004235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_004245 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_004245 PF00528 Binding-protein-dependent transport system inner membrane component M001_004250 PF00528 Binding-protein-dependent transport system inner membrane component M001_004255 PF00593 TonB dependent receptor M001_004255 PF07715 TonB-dependent Receptor Plug Domain M001_004265 PF01618 MotA/TolQ/ExbB proton channel family M001_004270 PF01618 MotA/TolQ/ExbB proton channel family M001_004275 PF02472 Biopolymer transport protein ExbD/TolR M001_004290 PF17969 L,D-transpeptidase C-terminal domain M001_004290 PF03734 L,D-transpeptidase catalytic domain M001_004295 PF01343 Peptidase family S49 M001_004300 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_004300 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M001_004305 PF00881 Nitroreductase family M001_004310 PF12464 Maltose acetyltransferase M001_004310 PF14602 Hexapeptide repeat of succinyl-transferase M001_004325 PF08240 Alcohol dehydrogenase GroES-like domain M001_004325 PF00107 Zinc-binding dehydrogenase M001_004330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_004330 PF03466 LysR substrate binding domain M001_004335 PF02378 Phosphotransferase system, EIIC M001_004335 PF00367 phosphotransferase system, EIIB M001_004335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M001_004340 PF00474 Sodium:solute symporter family M001_004350 PF02785 Biotin carboxylase C-terminal domain M001_004350 PF00289 Biotin carboxylase, N-terminal domain M001_004350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M001_004355 PF00364 Biotin-requiring enzyme M001_004360 PF01220 Dehydroquinase class II M001_004365 PF16177 Acetyl-coenzyme A synthetase N-terminus M001_004365 PF00501 AMP-binding enzyme M001_004365 PF13193 AMP-binding enzyme C-terminal domain M001_004375 PF03707 Bacterial signalling protein N terminal repeat M001_004375 PF00563 EAL domain M001_004375 PF00990 Diguanylate cyclase, GGDEF domain M001_004385 PF02613 Nitrate reductase delta subunit M001_004390 PF18364 Molybdopterin oxidoreductase N-terminal domain M001_004390 PF00384 Molybdopterin oxidoreductase M001_004390 PF01568 Molydopterin dinucleotide binding domain M001_004395 PF03264 NapC/NirT cytochrome c family, N-terminal region M001_004400 PF00072 Response regulator receiver domain M001_004400 PF00486 Transcriptional regulatory protein, C terminal M001_004410 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M001_004415 PF00072 Response regulator receiver domain M001_004415 PF00672 HAMP domain M001_004415 PF00512 His Kinase A (phospho-acceptor) domain M001_004415 PF01627 Hpt domain M001_004415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_004425 PF00464 Serine hydroxymethyltransferase M001_004430 PF03477 ATP cone domain M001_004435 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M001_004435 PF01872 RibD C-terminal domain M001_004440 PF00677 Lumazine binding domain M001_004445 PF00925 GTP cyclohydrolase II M001_004445 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M001_004455 PF00885 6,7-dimethyl-8-ribityllumazine synthase M001_004460 PF01029 NusB family M001_004465 PF02769 AIR synthase related protein, C-terminal domain M001_004465 PF00586 AIR synthase related protein, N-terminal domain M001_004470 PF04608 Phosphatidylglycerophosphatase A M001_004475 PF00005 ABC transporter M001_004475 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_004480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_004490 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_004490 PF00528 Binding-protein-dependent transport system inner membrane component M001_004495 PF02780 Transketolase, C-terminal domain M001_004495 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M001_004495 PF02779 Transketolase, pyrimidine binding domain M001_004500 PF00348 Polyprenyl synthetase M001_004505 PF02609 Exonuclease VII small subunit M001_004510 PF01618 MotA/TolQ/ExbB proton channel family M001_004515 PF13677 Membrane MotB of proton-channel complex MotA/MotB M001_004515 PF00691 OmpA family M001_004520 PF01272 Transcription elongation factor, GreA/GreB, C-term M001_004520 PF03449 Transcription elongation factor, N-terminal M001_004530 PF01985 CRS1 / YhbY (CRM) domain M001_004535 PF01728 FtsJ-like methyltransferase M001_004540 PF00004 ATPase family associated with various cellular activities (AAA) M001_004540 PF06480 FtsH Extracellular M001_004540 PF17862 AAA+ lid domain M001_004540 PF01434 Peptidase family M41 M001_004545 PF00809 Pterin binding enzyme M001_004550 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M001_004550 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M001_004550 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M001_004550 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M001_004555 PF00121 Triosephosphate isomerase M001_004560 PF03840 Preprotein translocase SecG subunit M001_004575 PF02576 RimP N-terminal domain M001_004575 PF17384 RimP C-terminal SH3 domain M001_004580 PF13184 NusA-like KH domain M001_004580 PF08529 NusA N-terminal domain M001_004580 PF00575 S1 RNA binding domain M001_004585 PF11987 Translation-initiation factor 2 M001_004585 PF08364 Bacterial translation initiation factor IF-2 associated region M001_004585 PF00009 Elongation factor Tu GTP binding domain M001_004585 PF04760 Translation initiation factor IF-2, N-terminal region M001_004590 PF02033 Ribosome-binding factor A M001_004595 PF16198 tRNA pseudouridylate synthase B C-terminal domain M001_004595 PF01509 TruB family pseudouridylate synthase (N terminal domain) M001_004595 PF09157 Pseudouridine synthase II TruB, C-terminal M001_004600 PF00312 Ribosomal protein S15 M001_004605 PF00013 KH domain M001_004605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M001_004605 PF01138 3' exoribonuclease family, domain 1 M001_004605 PF03725 3' exoribonuclease family, domain 2 M001_004605 PF00575 S1 RNA binding domain M001_004610 PF00072 Response regulator receiver domain M001_004610 PF01339 CheB methylesterase M001_004615 PF03975 CheD chemotactic sensory transduction M001_004620 PF01739 CheR methyltransferase, SAM binding domain M001_004620 PF03705 CheR methyltransferase, all-alpha domain M001_004625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_004625 PF00672 HAMP domain M001_004630 PF01584 CheW-like domain M001_004635 PF00672 HAMP domain M001_004635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_004635 PF12729 Four helix bundle sensory module for signal transduction M001_004640 PF01584 CheW-like domain M001_004640 PF02895 Signal transducing histidine kinase, homodimeric domain M001_004640 PF07194 P2 response regulator binding domain M001_004640 PF01627 Hpt domain M001_004640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_004650 PF00072 Response regulator receiver domain M001_004655 PF02743 Cache domain M001_004655 PF00672 HAMP domain M001_004655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_004665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_004665 PF03466 LysR substrate binding domain M001_004670 PF01810 LysE type translocator M001_004675 PF12392 Collagenase M001_004675 PF01136 Peptidase family U32 M001_004680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M001_004680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M001_004685 PF02805 Metal binding domain of Ada M001_004685 PF00730 HhH-GPD superfamily base excision DNA repair protein M001_004685 PF12833 Helix-turn-helix domain M001_004685 PF06029 AlkA N-terminal domain M001_004690 PF00114 Pilin (bacterial filament) M001_004690 PF07963 Prokaryotic N-terminal methylation motif M001_004720 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M001_004745 PF00106 short chain dehydrogenase M001_004750 PF03573 outer membrane porin, OprD family M001_004755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_004755 PF16591 Helical bimodular sensor domain M001_004755 PF00672 HAMP domain M001_004765 PF05638 Type VI secretion system effector, Hcp M001_004770 PF04717 Type VI secretion system, phage-baseplate injector M001_004815 PF00800 Prephenate dehydratase M001_004815 PF01817 Chorismate mutase type II M001_004830 PF06508 Queuosine biosynthesis protein QueC M001_004845 PF08349 Protein of unknown function (DUF1722) M001_004850 PF13411 MerR HTH family regulatory protein M001_004855 PF00875 DNA photolyase M001_004855 PF03441 FAD binding domain of DNA photolyase M001_004865 PF00106 short chain dehydrogenase M001_004910 PF02424 ApbE family M001_004915 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_004915 PF00175 Oxidoreductase NAD-binding domain M001_004915 PF00970 Oxidoreductase FAD-binding domain M001_004920 PF02508 Rnf-Nqr subunit, membrane protein M001_004925 PF02508 Rnf-Nqr subunit, membrane protein M001_004930 PF04205 FMN-binding domain M001_004935 PF03116 NQR2, RnfD, RnfE family M001_004940 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) M001_004940 PF11973 NQRA C-terminal domain M001_004945 PF01722 BolA-like protein M001_004950 PF05175 Methyltransferase small domain M001_004960 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M001_004965 PF07690 Major Facilitator Superfamily M001_004970 PF03502 Nucleoside-specific channel-forming protein, Tsx M001_004975 PF04461 Protein of unknown function (DUF520) M001_004980 PF08546 Ketopantoate reductase PanE/ApbA C terminal M001_004980 PF02558 Ketopantoate reductase PanE/ApbA M001_004985 PF01965 DJ-1/PfpI family M001_004995 PF11798 IMS family HHH motif M001_004995 PF00817 impB/mucB/samB family M001_004995 PF11799 impB/mucB/samB family C-terminal domain M001_005000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_005000 PF00672 HAMP domain M001_005005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005005 PF03466 LysR substrate binding domain M001_005015 PF04241 Protein of unknown function (DUF423) M001_005020 PF01728 FtsJ-like methyltransferase M001_005020 PF18125 RlmM ferredoxin-like domain M001_005030 PF13006 Insertion element 4 transposase N-terminal M001_005030 PF01609 Transposase DDE domain M001_005035 PF00180 Isocitrate/isopropylmalate dehydrogenase M001_005035 PF18324 Hypothetical protein TT1725 M001_005040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M001_005040 PF01367 5'-3' exonuclease, C-terminal SAM fold M001_005045 PF11892 Domain of unknown function (DUF3412) M001_005045 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases M001_005045 PF03641 Possible lysine decarboxylase M001_005050 PF17158 Membrane-associated sensor, integral membrane domain M001_005050 PF00990 Diguanylate cyclase, GGDEF domain M001_005060 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term M001_005060 PF14489 QueF-like protein M001_005065 PF07348 Syd protein (SUKH-2) M001_005070 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) M001_005095 PF04287 tRNA pseudouridine synthase C M001_005100 PF00849 RNA pseudouridylate synthase M001_005105 PF00258 Flavodoxin M001_005110 PF02264 LamB porin M001_005115 PF07148 Maltose operon periplasmic protein precursor (MalM) M001_005120 PF00367 phosphotransferase system, EIIB M001_005120 PF02378 Phosphotransferase system, EIIC M001_005125 PF11944 Protein of unknown function (DUF3461) M001_005130 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal M001_005130 PF14602 Hexapeptide repeat of succinyl-transferase M001_005130 PF00132 Bacterial transferase hexapeptide (six repeats) M001_005135 PF01909 Nucleotidyltransferase domain M001_005135 PF01966 HD domain M001_005135 PF08335 GlnD PII-uridylyltransferase M001_005135 PF01842 ACT domain M001_005140 PF00557 Metallopeptidase family M24 M001_005145 PF00318 Ribosomal protein S2 M001_005150 PF00889 Elongation factor TS M001_005155 PF00696 Amino acid kinase family M001_005160 PF01765 Ribosome recycling factor M001_005165 PF01255 Putative undecaprenyl diphosphate synthase M001_005175 PF13288 DXP reductoisomerase C-terminal domain M001_005175 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M001_005175 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M001_005180 PF17820 PDZ domain M001_005180 PF02163 Peptidase family M50 M001_005185 PF01103 Surface antigen M001_005185 PF07244 Surface antigen variable number repeat M001_005190 PF03938 Outer membrane protein (OmpH-like) M001_005195 PF00132 Bacterial transferase hexapeptide (six repeats) M001_005195 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD M001_005200 PF07977 FabA-like domain M001_005205 PF00132 Bacterial transferase hexapeptide (six repeats) M001_005205 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 M001_005210 PF02684 Lipid-A-disaccharide synthetase M001_005215 PF01351 Ribonuclease HII M001_005220 PF01336 OB-fold nucleic acid binding domain M001_005220 PF07733 Bacterial DNA polymerase III alpha NTPase domain M001_005220 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M001_005220 PF14579 Helix-hairpin-helix motif M001_005220 PF02811 PHP domain M001_005225 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M001_005235 PF00923 Transaldolase/Fructose-6-phosphate aldolase M001_005240 PF01235 Sodium:alanine symporter family M001_005245 PF13559 Domain of unknown function (DUF4129) M001_005245 PF01841 Transglutaminase-like superfamily M001_005245 PF11992 Domain of unknown function (DUF3488) M001_005255 PF07726 ATPase family associated with various cellular activities (AAA) M001_005255 PF17863 AAA lid domain M001_005260 PF07690 Major Facilitator Superfamily M001_005265 PF03466 LysR substrate binding domain M001_005265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005270 PF00854 POT family M001_005275 PF03652 Holliday junction resolvase M001_005280 PF02622 Uncharacterized ACR, COG1678 M001_005285 PF02951 Prokaryotic glutathione synthetase, N-terminal domain M001_005285 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain M001_005290 PF04452 RNA methyltransferase M001_005295 PF04231 Endonuclease I M001_005300 PF17283 SprT-like zinc ribbon domain M001_005300 PF10263 SprT-like family M001_005305 PF02773 S-adenosylmethionine synthetase, C-terminal domain M001_005305 PF02772 S-adenosylmethionine synthetase, central domain M001_005305 PF00438 S-adenosylmethionine synthetase, N-terminal domain M001_005310 PF02780 Transketolase, C-terminal domain M001_005310 PF02779 Transketolase, pyrimidine binding domain M001_005310 PF00456 Transketolase, thiamine diphosphate binding domain M001_005320 PF01042 Endoribonuclease L-PSP M001_005330 PF03702 Anhydro-N-acetylmuramic acid kinase M001_005335 PF01476 LysM domain M001_005335 PF08525 Opacity-associated protein A N-terminal motif M001_005335 PF01551 Peptidase family M23 M001_005340 PF00579 tRNA synthetases class I (W and Y) M001_005345 PF03466 LysR substrate binding domain M001_005345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005350 PF03306 Alpha-acetolactate decarboxylase M001_005355 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_005355 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M001_005355 PF00205 Thiamine pyrophosphate enzyme, central domain M001_005365 PF03466 LysR substrate binding domain M001_005365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005380 PF12706 Beta-lactamase superfamily domain M001_005385 PF03466 LysR substrate binding domain M001_005385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005390 PF13520 Amino acid permease M001_005395 PF13302 Acetyltransferase (GNAT) domain M001_005400 PF00005 ABC transporter M001_005400 PF12848 ABC transporter M001_005400 PF16326 ABC transporter C-terminal domain M001_005405 PF00486 Transcriptional regulatory protein, C terminal M001_005405 PF18500 CadC C-terminal domain 1 M001_005410 PF13520 Amino acid permease M001_005415 PF01276 Orn/Lys/Arg decarboxylase, major domain M001_005415 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain M001_005415 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M001_005420 PF08543 Phosphomethylpyrimidine kinase M001_005430 PF01431 Peptidase family M13 M001_005430 PF05649 Peptidase family M13 M001_005435 PF01171 PP-loop family M001_005435 PF09179 TilS substrate binding domain M001_005435 PF11734 TilS substrate C-terminal domain M001_005440 PF00990 Diguanylate cyclase, GGDEF domain M001_005445 PF02254 TrkA-N domain M001_005445 PF02080 TrkA-C domain M001_005445 PF00999 Sodium/hydrogen exchanger family M001_005465 PF00072 Response regulator receiver domain M001_005465 PF00196 Bacterial regulatory proteins, luxR family M001_005475 PF00128 Alpha amylase, catalytic domain M001_005490 PF00535 Glycosyl transferase family 2 M001_005505 PF01471 Putative peptidoglycan binding domain M001_005505 PF03734 L,D-transpeptidase catalytic domain M001_005510 PF05951 Bacterial protein of unknown function (DUF882) M001_005520 PF03458 UPF0126 domain M001_005530 PF06470 SMC proteins Flexible Hinge Domain M001_005530 PF02463 RecF/RecN/SMC N terminal domain M001_005535 PF04354 ZipA, C-terminal FtsZ-binding domain M001_005540 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M001_005540 PF12826 Helix-hairpin-helix motif M001_005540 PF01653 NAD-dependent DNA ligase adenylation domain M001_005540 PF03120 NAD-dependent DNA ligase OB-fold domain M001_005540 PF00533 BRCA1 C Terminus (BRCT) domain M001_005555 PF03477 ATP cone domain M001_005555 PF13597 Anaerobic ribonucleoside-triphosphate reductase M001_005565 PF01679 Proteolipid membrane potential modulator M001_005590 PF00529 HlyD membrane-fusion protein of T1SS M001_005590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_005595 PF01047 MarR family M001_005605 PF03390 2-hydroxycarboxylate transporter family M001_005610 PF00390 Malic enzyme, N-terminal domain M001_005610 PF03949 Malic enzyme, NAD binding domain M001_005615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_005615 PF17203 Single cache domain 3 M001_005615 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M001_005615 PF00989 PAS fold M001_005620 PF00072 Response regulator receiver domain M001_005620 PF12431 Transcriptional regulator M001_005625 PF00892 EamA-like transporter family M001_005635 PF00171 Aldehyde dehydrogenase family M001_005640 PF00158 Sigma-54 interaction domain M001_005640 PF02954 Bacterial regulatory protein, Fis family M001_005640 PF01590 GAF domain M001_005645 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M001_005650 PF00072 Response regulator receiver domain M001_005650 PF00486 Transcriptional regulatory protein, C terminal M001_005655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_005655 PF00512 His Kinase A (phospho-acceptor) domain M001_005655 PF00989 PAS fold M001_005655 PF11808 Phosphate regulon sensor protein PhoR M001_005660 PF12849 PBP superfamily domain M001_005665 PF01435 Peptidase family M48 M001_005675 PF00480 ROK family M001_005680 PF03932 CutC family M001_005685 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_005685 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M001_005700 PF00293 NUDIX domain M001_005710 PF08534 Redoxin M001_005715 PF01699 Sodium/calcium exchanger protein M001_005720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M001_005720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M001_005725 PF01235 Sodium:alanine symporter family M001_005730 PF13195 Protein of unknown function (DUF4011) M001_005730 PF13087 AAA domain M001_005730 PF13086 AAA domain M001_005730 PF13087 AAA domain M001_005730 PF13086 AAA domain M001_005730 PF13195 Protein of unknown function (DUF4011) M001_005740 PF00860 Permease family M001_005745 PF00990 Diguanylate cyclase, GGDEF domain M001_005750 PF10692 Protein of unknown function (DUF2498) M001_005755 PF01554 MatE M001_005760 PF12833 Helix-turn-helix domain M001_005765 PF00390 Malic enzyme, N-terminal domain M001_005765 PF03949 Malic enzyme, NAD binding domain M001_005770 PF01389 OmpA-like transmembrane domain M001_005770 PF00691 OmpA family M001_005775 PF01389 OmpA-like transmembrane domain M001_005775 PF00691 OmpA family M001_005790 PF13520 Amino acid permease M001_005795 PF01734 Patatin-like phospholipase M001_005800 PF00990 Diguanylate cyclase, GGDEF domain M001_005800 PF17158 Membrane-associated sensor, integral membrane domain M001_005805 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_005805 PF00529 HlyD membrane-fusion protein of T1SS M001_005810 PF00873 AcrB/AcrD/AcrF family M001_005815 PF08497 Radical SAM N-terminal M001_005815 PF04055 Radical SAM superfamily M001_005815 PF11842 Domain of unknown function (DUF3362) M001_005845 PF04389 Peptidase family M28 M001_005845 PF04151 Bacterial pre-peptidase C-terminal domain M001_005860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_005860 PF03466 LysR substrate binding domain M001_005865 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M001_005870 PF04358 DsrC like protein M001_005875 PF12805 FUSC-like inner membrane protein yccS M001_005880 PF01027 Inhibitor of apoptosis-promoting Bax1 M001_005890 PF00455 DeoR C terminal sensor domain M001_005890 PF08220 DeoR-like helix-turn-helix domain M001_005895 PF01261 Xylose isomerase-like TIM barrel M001_005910 PF03611 PTS system sugar-specific permease component M001_005915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_005920 PF00596 Class II Aldolase and Adducin N-terminal domain M001_005925 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M001_005930 PF01203 Type II secretion system (T2SS), protein N M001_005935 PF04612 Type II secretion system (T2SS), protein M M001_005940 PF05134 Type II secretion system (T2SS), protein L M001_005940 PF12693 GspL periplasmic domain M001_005945 PF03934 Type II secretion system (T2SS), protein K M001_005950 PF11612 Type II secretion system (T2SS), protein J M001_005950 PF07963 Prokaryotic N-terminal methylation motif M001_005955 PF07963 Prokaryotic N-terminal methylation motif M001_005955 PF02501 Type II secretion system (T2SS), protein I M001_005960 PF07963 Prokaryotic N-terminal methylation motif M001_005960 PF12019 Type II transport protein GspH M001_005965 PF07963 Prokaryotic N-terminal methylation motif M001_005965 PF08334 Type II secretion system (T2SS), protein G M001_005970 PF00482 Type II secretion system (T2SS), protein F M001_005975 PF00437 Type II/IV secretion system protein M001_005980 PF03958 Bacterial type II/III secretion system short domain M001_005980 PF00263 Bacterial type II and III secretion system protein M001_005985 PF11356 Type II secretion system protein C M001_005990 PF16537 Type II secretion system protein B M001_005995 PF13401 AAA domain M001_005995 PF01471 Putative peptidoglycan binding domain M001_006000 PF01966 HD domain M001_006000 PF00672 HAMP domain M001_006005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M001_006005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M001_006015 PF01434 Peptidase family M41 M001_006015 PF17862 AAA+ lid domain M001_006015 PF00004 ATPase family associated with various cellular activities (AAA) M001_006020 PF00291 Pyridoxal-phosphate dependent enzyme M001_006025 PF00381 PTS HPr component phosphorylation site M001_006030 PF02896 PEP-utilising enzyme, TIM barrel domain M001_006030 PF05524 PEP-utilising enzyme, N-terminal M001_006030 PF00391 PEP-utilising enzyme, mobile domain M001_006035 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M001_006040 PF13006 Insertion element 4 transposase N-terminal M001_006040 PF01609 Transposase DDE domain M001_006045 PF00990 Diguanylate cyclase, GGDEF domain M001_006045 PF08448 PAS fold M001_006050 PF05649 Peptidase family M13 M001_006050 PF01431 Peptidase family M13 M001_006060 PF12795 Mechanosensitive ion channel porin domain M001_006060 PF00924 Mechanosensitive ion channel M001_006060 PF12794 Mechanosensitive ion channel inner membrane domain 1 M001_006065 PF00224 Pyruvate kinase, barrel domain M001_006065 PF02887 Pyruvate kinase, alpha/beta domain M001_006075 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M001_006080 PF13476 AAA domain M001_006085 PF12320 Type 5 capsule protein repressor C-terminal domain M001_006085 PF00149 Calcineurin-like phosphoesterase M001_006095 PF04381 Putative exonuclease, RdgC M001_006105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M001_006105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_006110 PF02690 Na+/Pi-cotransporter M001_006115 PF00324 Amino acid permease M001_006125 PF00324 Amino acid permease M001_006130 PF00202 Aminotransferase class-III M001_006135 PF00171 Aldehyde dehydrogenase family M001_006140 PF01381 Helix-turn-helix M001_006140 PF07883 Cupin domain M001_006145 PF01266 FAD dependent oxidoreductase M001_006160 PF03350 Uncharacterized protein family, UPF0114 M001_006165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_006165 PF08918 PhoQ Sensor M001_006170 PF00072 Response regulator receiver domain M001_006170 PF00486 Transcriptional regulatory protein, C terminal M001_006180 PF01292 Prokaryotic cytochrome b561 M001_006185 PF18389 TrmO C-terminal domain M001_006185 PF01980 tRNA-methyltransferase O M001_006205 PF00005 ABC transporter M001_006205 PF00664 ABC transporter transmembrane region M001_006210 PF00664 ABC transporter transmembrane region M001_006210 PF00005 ABC transporter M001_006225 PF00072 Response regulator receiver domain M001_006225 PF00486 Transcriptional regulatory protein, C terminal M001_006235 PF03737 Aldolase/RraA M001_006255 PF06953 Arsenical resistance operon trans-acting repressor ArsD M001_006260 PF02374 Anion-transporting ATPase M001_006265 PF01758 Sodium Bile acid symporter family M001_006270 PF03960 ArsC family M001_006275 PF01773 Na+ dependent nucleoside transporter N-terminus M001_006275 PF07662 Na+ dependent nucleoside transporter C-terminus M001_006275 PF07670 Nucleoside recognition M001_006295 PF04307 LexA-binding, inner membrane-associated putative hydrolase M001_006315 PF00290 Tryptophan synthase alpha chain M001_006320 PF00291 Pyridoxal-phosphate dependent enzyme M001_006325 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M001_006325 PF00218 Indole-3-glycerol phosphate synthase M001_006330 PF00591 Glycosyl transferase family, a/b domain M001_006330 PF02885 Glycosyl transferase family, helical bundle domain M001_006335 PF02885 Glycosyl transferase family, helical bundle domain M001_006335 PF00591 Glycosyl transferase family, a/b domain M001_006335 PF00117 Glutamine amidotransferase class-I M001_006340 PF04715 Anthranilate synthase component I, N terminal region M001_006340 PF00425 chorismate binding enzyme M001_006345 PF02811 PHP domain M001_006350 PF01300 Telomere recombination M001_006355 PF02616 Segregation and condensation protein ScpA M001_006360 PF04079 Segregation and condensation complex subunit ScpB M001_006365 PF00849 RNA pseudouridylate synthase M001_006365 PF01479 S4 domain M001_006375 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) M001_006380 PF00588 SpoU rRNA Methylase family M001_006385 PF13840 ACT domain M001_006385 PF01842 ACT domain M001_006385 PF00742 Homoserine dehydrogenase M001_006385 PF00696 Amino acid kinase family M001_006385 PF03447 Homoserine dehydrogenase, NAD binding domain M001_006390 PF00288 GHMP kinases N terminal domain M001_006390 PF08544 GHMP kinases C terminal M001_006395 PF14821 Threonine synthase N terminus M001_006395 PF00291 Pyridoxal-phosphate dependent enzyme M001_006420 PF00919 Uncharacterized protein family UPF0004 M001_006420 PF18693 TRAM domain M001_006420 PF04055 Radical SAM superfamily M001_006425 PF00072 Response regulator receiver domain M001_006440 PF02001 Protein of unknown function DUF134 M001_006455 PF00440 Bacterial regulatory proteins, tetR family M001_006455 PF08361 MAATS-type transcriptional repressor, C-terminal region M001_006460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_006460 PF00529 HlyD membrane-fusion protein of T1SS M001_006465 PF00873 AcrB/AcrD/AcrF family M001_006470 PF16363 GDP-mannose 4,6 dehydratase M001_006475 PF04321 RmlD substrate binding domain M001_006480 PF00483 Nucleotidyl transferase M001_006485 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase M001_006490 PF00437 Type II/IV secretion system protein M001_006495 PF00482 Type II secretion system (T2SS), protein F M001_006500 PF07963 Prokaryotic N-terminal methylation motif M001_006500 PF08334 Type II secretion system (T2SS), protein G M001_006505 PF07963 Prokaryotic N-terminal methylation motif M001_006505 PF08334 Type II secretion system (T2SS), protein G M001_006540 PF00263 Bacterial type II and III secretion system protein M001_006540 PF03958 Bacterial type II/III secretion system short domain M001_006560 PF00005 ABC transporter M001_006570 PF01757 Acyltransferase family M001_006580 PF01370 NAD dependent epimerase/dehydratase family M001_006585 PF00953 Glycosyl transferase family 4 M001_006590 PF02719 Polysaccharide biosynthesis protein M001_006600 PF00535 Glycosyl transferase family 2 M001_006605 PF00534 Glycosyl transferases group 1 M001_006605 PF13439 Glycosyltransferase Family 4 M001_006615 PF02397 Bacterial sugar transferase M001_006625 PF00816 H-NS histone family M001_006630 PF02321 Outer membrane efflux protein M001_006635 PF12704 MacB-like periplasmic core domain M001_006635 PF02687 FtsX-like permease family M001_006635 PF00005 ABC transporter M001_006640 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_006645 PF01368 DHH family M001_006645 PF02833 DHHA2 domain M001_006650 PF02463 RecF/RecN/SMC N terminal domain M001_006655 PF01513 ATP-NAD kinase M001_006660 PF01025 GrpE M001_006665 PF00012 Hsp70 protein M001_006670 PF01556 DnaJ C terminal domain M001_006670 PF00226 DnaJ domain M001_006670 PF00684 DnaJ central domain M001_006675 PF02264 LamB porin M001_006675 PF11471 Maltoporin periplasmic N-terminal extension M001_006680 PF00294 pfkB family carbohydrate kinase M001_006685 PF02378 Phosphotransferase system, EIIC M001_006685 PF00367 phosphotransferase system, EIIB M001_006690 PF00251 Glycosyl hydrolases family 32 N-terminal domain M001_006690 PF08244 Glycosyl hydrolases family 32 C terminal M001_006695 PF13407 Periplasmic binding protein domain M001_006695 PF00356 Bacterial regulatory proteins, lacI family M001_006700 PF02308 MgtC family M001_006710 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_006725 PF04143 Sulphur transport M001_006740 PF00873 AcrB/AcrD/AcrF family M001_006745 PF00529 HlyD membrane-fusion protein of T1SS M001_006745 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_006750 PF02687 FtsX-like permease family M001_006750 PF00005 ABC transporter M001_006750 PF12704 MacB-like periplasmic core domain M001_006755 PF02687 FtsX-like permease family M001_006755 PF12704 MacB-like periplasmic core domain M001_006755 PF00005 ABC transporter M001_006760 PF00005 ABC transporter M001_006760 PF12704 MacB-like periplasmic core domain M001_006760 PF02687 FtsX-like permease family M001_006765 PF03707 Bacterial signalling protein N terminal repeat M001_006765 PF00990 Diguanylate cyclase, GGDEF domain M001_006765 PF00563 EAL domain M001_006770 PF10437 Bacterial lipoate protein ligase C-terminus M001_006770 PF03099 Biotin/lipoate A/B protein ligase family M001_006780 PF13460 NAD(P)H-binding M001_006785 PF04355 SmpA / OmlA family M001_006790 PF00465 Iron-containing alcohol dehydrogenase M001_006795 PF01048 Phosphorylase superfamily M001_006800 PF00849 RNA pseudouridylate synthase M001_006805 PF01156 Inosine-uridine preferring nucleoside hydrolase M001_006820 PF07509 Protein of unknown function (DUF1523) M001_006825 PF12729 Four helix bundle sensory module for signal transduction M001_006825 PF00672 HAMP domain M001_006825 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_006830 PF01810 LysE type translocator M001_006845 PF03471 Transporter associated domain M001_006845 PF02080 TrkA-C domain M001_006845 PF00999 Sodium/hydrogen exchanger family M001_006855 PF02557 D-alanyl-D-alanine carboxypeptidase M001_006860 PF07687 Peptidase dimerisation domain M001_006860 PF01546 Peptidase family M20/M25/M40 M001_006865 PF03960 ArsC family M001_006875 PF03606 C4-dicarboxylate anaerobic carrier M001_006880 PF01546 Peptidase family M20/M25/M40 M001_006880 PF07687 Peptidase dimerisation domain M001_006890 PF03605 Anaerobic c4-dicarboxylate membrane transporter M001_006900 PF00152 tRNA synthetases class II (D, K and N) M001_006900 PF01336 OB-fold nucleic acid binding domain M001_006915 PF00202 Aminotransferase class-III M001_006920 PF04055 Radical SAM superfamily M001_006920 PF06968 Biotin and Thiamin Synthesis associated domain M001_006925 PF00155 Aminotransferase class I and II M001_006930 PF08241 Methyltransferase domain M001_006930 PF12697 Alpha/beta hydrolase family M001_006940 PF01435 Peptidase family M48 M001_006945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_006945 PF13426 PAS domain M001_006945 PF08447 PAS fold M001_006950 PF03476 MOSC N-terminal beta barrel domain M001_006950 PF03476 MOSC N-terminal beta barrel domain M001_006950 PF03473 MOSC domain M001_006950 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_006950 PF03473 MOSC domain M001_006950 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_006960 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M001_006960 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_006960 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M001_006965 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M001_006965 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M001_006965 PF10371 Domain of unknown function M001_006965 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_006965 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M001_006980 PF01370 NAD dependent epimerase/dehydratase family M001_006985 PF03061 Thioesterase superfamily M001_006995 PF03372 Endonuclease/Exonuclease/phosphatase family M001_007000 PF00462 Glutaredoxin M001_007005 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M001_007010 PF00271 Helicase conserved C-terminal domain M001_007010 PF04851 Type III restriction enzyme, res subunit M001_007015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_007015 PF00529 HlyD membrane-fusion protein of T1SS M001_007020 PF11742 Protein of unknown function (DUF3302) M001_007025 PF02554 Carbon starvation protein CstA M001_007030 PF00072 Response regulator receiver domain M001_007030 PF04397 LytTr DNA-binding domain M001_007035 PF06580 Histidine kinase M001_007035 PF07694 5TMR of 5TMR-LYT M001_007040 PF01966 HD domain M001_007045 PF08019 Phosphoethanolamine transferase EptA/EptB M001_007045 PF00884 Sulfatase M001_007050 PF01047 MarR family M001_007050 PF00480 ROK family M001_007055 PF01979 Amidohydrolase family M001_007060 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M001_007065 PF02378 Phosphotransferase system, EIIC M001_007065 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M001_007065 PF00367 phosphotransferase system, EIIB M001_007070 PF02838 Glycosyl hydrolase family 20, domain 2 M001_007070 PF00728 Glycosyl hydrolase family 20, catalytic domain M001_007070 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain M001_007070 PF03173 Putative carbohydrate binding domain M001_007075 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M001_007075 PF00749 tRNA synthetases class I (E and Q), catalytic domain M001_007080 PF01475 Ferric uptake regulator family M001_007090 PF00258 Flavodoxin M001_007095 PF01402 Ribbon-helix-helix protein, copG family M001_007105 PF12697 Alpha/beta hydrolase family M001_007110 PF17206 SeqA protein N-terminal domain M001_007110 PF03925 SeqA protein C-terminal domain M001_007115 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M001_007115 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M001_007115 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M001_007115 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M001_007130 PF13406 Transglycosylase SLT domain M001_007135 PF01066 CDP-alcohol phosphatidyltransferase M001_007140 PF00005 ABC transporter M001_007145 PF00528 Binding-protein-dependent transport system inner membrane component M001_007150 PF13416 Bacterial extracellular solute-binding protein M001_007155 PF00403 Heavy-metal-associated domain M001_007155 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_007155 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M001_007160 PF02627 Carboxymuconolactone decarboxylase family M001_007180 PF01103 Surface antigen M001_007180 PF07244 Surface antigen variable number repeat M001_007180 PF17243 POTRA domain TamA domain 1 M001_007185 PF04357 TamB, inner membrane protein subunit of TAM complex M001_007205 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M001_007210 PF03707 Bacterial signalling protein N terminal repeat M001_007210 PF00990 Diguanylate cyclase, GGDEF domain M001_007210 PF00563 EAL domain M001_007215 PF01464 Transglycosylase SLT domain M001_007215 PF14718 Soluble lytic murein transglycosylase L domain M001_007220 PF00356 Bacterial regulatory proteins, lacI family M001_007225 PF00793 DAHP synthetase I family M001_007230 PF07715 TonB-dependent Receptor Plug Domain M001_007230 PF00593 TonB dependent receptor M001_007235 PF00425 chorismate binding enzyme M001_007240 PF13193 AMP-binding enzyme C-terminal domain M001_007240 PF00501 AMP-binding enzyme M001_007245 PF00857 Isochorismatase family M001_007245 PF00550 Phosphopantetheine attachment site M001_007255 PF00501 AMP-binding enzyme M001_007255 PF00668 Condensation domain M001_007255 PF00975 Thioesterase domain M001_007255 PF00550 Phosphopantetheine attachment site M001_007265 PF00676 Dehydrogenase E1 component M001_007270 PF02779 Transketolase, pyrimidine binding domain M001_007270 PF02780 Transketolase, C-terminal domain M001_007275 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M001_007275 PF00364 Biotin-requiring enzyme M001_007275 PF02817 e3 binding domain M001_007280 PF00313 'Cold-shock' DNA-binding domain M001_007305 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_007310 PF08220 DeoR-like helix-turn-helix domain M001_007310 PF00455 DeoR C terminal sensor domain M001_007315 PF02901 Pyruvate formate lyase-like M001_007315 PF01228 Glycine radical M001_007320 PF04055 Radical SAM superfamily M001_007325 PF00923 Transaldolase/Fructose-6-phosphate aldolase M001_007335 PF01966 HD domain M001_007340 PF00849 RNA pseudouridylate synthase M001_007340 PF01479 S4 domain M001_007350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_007355 PF12850 Calcineurin-like phosphoesterase superfamily domain M001_007370 PF13144 Chaperone for flagella basal body P-ring formation M001_007375 PF01584 CheW-like domain M001_007375 PF00072 Response regulator receiver domain M001_007380 PF03705 CheR methyltransferase, all-alpha domain M001_007380 PF01739 CheR methyltransferase, SAM binding domain M001_007385 PF00460 Flagella basal body rod protein M001_007390 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_007390 PF00460 Flagella basal body rod protein M001_007395 PF03963 Flagellar hook capping protein - N-terminal region M001_007395 PF13861 FlgD Tudor-like domain M001_007395 PF13860 FlgD Ig-like domain M001_007400 PF07559 Flagellar basal body protein FlaE M001_007400 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_007400 PF00460 Flagella basal body rod protein M001_007405 PF00460 Flagella basal body rod protein M001_007405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_007410 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_007410 PF00460 Flagella basal body rod protein M001_007415 PF02107 Flagellar L-ring protein M001_007420 PF02119 Flagellar P-ring protein M001_007425 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M001_007425 PF10135 Rod binding protein M001_007430 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M001_007430 PF07196 Flagellin hook IN motif M001_007435 PF00669 Bacterial flagellin N-terminal helical region M001_007440 PF00571 CBS domain M001_007440 PF03448 MgtE intracellular N domain M001_007440 PF01769 Divalent cation transporter M001_007445 PF02541 Ppx/GppA phosphatase family M001_007450 PF13090 Polyphosphate kinase C-terminal domain 2 M001_007450 PF02503 Polyphosphate kinase middle domain M001_007450 PF17941 Polyphosphate kinase C-terminal domain 1 M001_007450 PF13089 Polyphosphate kinase N-terminal domain M001_007455 PF01842 ACT domain M001_007465 PF02954 Bacterial regulatory protein, Fis family M001_007465 PF00158 Sigma-54 interaction domain M001_007465 PF06490 Flagellar regulatory protein FleQ M001_007470 PF00512 His Kinase A (phospho-acceptor) domain M001_007470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_007470 PF00989 PAS fold M001_007475 PF00158 Sigma-54 interaction domain M001_007475 PF00072 Response regulator receiver domain M001_007475 PF02954 Bacterial regulatory protein, Fis family M001_007480 PF01784 NIF3 (NGG1p interacting factor 3) M001_007485 PF00551 Formyl transferase M001_007490 PF00586 AIR synthase related protein, N-terminal domain M001_007490 PF02769 AIR synthase related protein, C-terminal domain M001_007505 PF00308 Bacterial dnaA protein M001_007510 PF00463 Isocitrate lyase family M001_007515 PF01274 Malate synthase M001_007530 PF14437 MafB19-like deaminase M001_007535 PF00528 Binding-protein-dependent transport system inner membrane component M001_007540 PF00528 Binding-protein-dependent transport system inner membrane component M001_007545 PF00005 ABC transporter M001_007550 PF01895 PhoU domain M001_007555 PF00571 CBS domain M001_007555 PF03471 Transporter associated domain M001_007555 PF01595 Cyclin M transmembrane N-terminal domain M001_007565 PF00809 Pterin binding enzyme M001_007565 PF02607 B12 binding domain M001_007565 PF02965 Vitamin B12 dependent methionine synthase, activation domain M001_007565 PF02574 Homocysteine S-methyltransferase M001_007565 PF02310 B12 binding domain M001_007570 PF13520 Amino acid permease M001_007575 PF04116 Fatty acid hydroxylase superfamily M001_007585 PF00005 ABC transporter M001_007590 PF00528 Binding-protein-dependent transport system inner membrane component M001_007595 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_007600 PF00990 Diguanylate cyclase, GGDEF domain M001_007605 PF07690 Major Facilitator Superfamily M001_007610 PF07730 Histidine kinase M001_007610 PF05231 MASE1 M001_007610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_007615 PF00072 Response regulator receiver domain M001_007615 PF00196 Bacterial regulatory proteins, luxR family M001_007620 PF14760 Rnk N-terminus M001_007620 PF01272 Transcription elongation factor, GreA/GreB, C-term M001_007635 PF00245 Alkaline phosphatase M001_007640 PF00245 Alkaline phosphatase M001_007645 PF01926 50S ribosome-binding GTPase M001_007650 PF00850 Histone deacetylase domain M001_007660 PF13307 Helicase C-terminal domain M001_007660 PF06733 DEAD_2 M001_007665 PF13609 Gram-negative porin M001_007670 PF02153 Prephenate dehydrogenase M001_007670 PF01817 Chorismate mutase type II M001_007675 PF00793 DAHP synthetase I family M001_007680 PF00483 Nucleotidyl transferase M001_007685 PF02355 Protein export membrane protein M001_007685 PF07549 SecD/SecF GG Motif M001_007690 PF13721 SecD export protein N-terminal TM region M001_007690 PF02355 Protein export membrane protein M001_007690 PF07549 SecD/SecF GG Motif M001_007725 PF01230 HIT domain M001_007730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_007730 PF00672 HAMP domain M001_007740 PF01979 Amidohydrolase family M001_007755 PF00375 Sodium:dicarboxylate symporter family M001_007760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_007760 PF00672 HAMP domain M001_007775 PF05661 Protein of unknown function (DUF808) M001_007780 PF08439 Oligopeptidase F M001_007780 PF01432 Peptidase family M3 M001_007785 PF00860 Permease family M001_007790 PF05728 Uncharacterised protein family (UPF0227) M001_007795 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_007805 PF04055 Radical SAM superfamily M001_007810 PF00563 EAL domain M001_007810 PF03707 Bacterial signalling protein N terminal repeat M001_007810 PF00990 Diguanylate cyclase, GGDEF domain M001_007815 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M001_007815 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_007825 PF00207 Alpha-2-macroglobulin family M001_007825 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain M001_007825 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain M001_007825 PF07703 Alpha-2-macroglobulin bait region domain M001_007825 PF11974 Bacterial alpha-2-macroglobulin MG3 domain M001_007825 PF07678 A-macroglobulin TED domain M001_007825 PF01835 MG2 domain M001_007825 PF17962 Bacterial macroglobulin domain 6 M001_007825 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain M001_007830 PF06832 Penicillin-Binding Protein C-terminus Family M001_007830 PF00905 Penicillin binding protein transpeptidase domain M001_007830 PF00912 Transglycosylase M001_007840 PF02926 THUMP domain M001_007840 PF02568 Thiamine biosynthesis protein (ThiI) M001_007845 PF01609 Transposase DDE domain M001_007845 PF13006 Insertion element 4 transposase N-terminal M001_007855 PF03458 UPF0126 domain M001_007860 PF00700 Bacterial flagellin C-terminal helical region M001_007860 PF00669 Bacterial flagellin N-terminal helical region M001_007865 PF00669 Bacterial flagellin N-terminal helical region M001_007865 PF00700 Bacterial flagellin C-terminal helical region M001_007875 PF07195 Flagellar hook-associated protein 2 C-terminus M001_007875 PF07196 Flagellin hook IN motif M001_007875 PF02465 Flagellar hook-associated protein 2 N-terminus M001_007880 PF02561 Flagellar protein FliS M001_007905 PF08666 SAF domain M001_007905 PF03102 NeuB family M001_007915 PF02348 Cytidylyltransferase M001_007935 PF13193 AMP-binding enzyme C-terminal domain M001_007935 PF00501 AMP-binding enzyme M001_007950 PF00535 Glycosyl transferase family 2 M001_007955 PF03275 UDP-galactopyranose mutase M001_007960 PF00535 Glycosyl transferase family 2 M001_007975 PF00535 Glycosyl transferase family 2 M001_007975 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase M001_007985 PF13580 SIS domain M001_007990 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M001_007990 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M001_008000 PF01761 3-dehydroquinate synthase M001_008005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_008005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M001_008005 PF01842 ACT domain M001_008010 PF02348 Cytidylyltransferase M001_008020 PF00202 Aminotransferase class-III M001_008025 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M001_008030 PF02719 Polysaccharide biosynthesis protein M001_008035 PF01497 Periplasmic binding protein M001_008045 PF01048 Phosphorylase superfamily M001_008050 PF02535 ZIP Zinc transporter M001_008055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_008055 PF00672 HAMP domain M001_008055 PF12729 Four helix bundle sensory module for signal transduction M001_008060 PF00459 Inositol monophosphatase family M001_008070 PF02798 Glutathione S-transferase, N-terminal domain M001_008070 PF00043 Glutathione S-transferase, C-terminal domain M001_008075 PF07690 Major Facilitator Superfamily M001_008080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008080 PF03466 LysR substrate binding domain M001_008085 PF02634 FdhD/NarQ family M001_008090 PF00384 Molybdopterin oxidoreductase M001_008100 PF05164 Cell division protein ZapA M001_008105 PF03695 Uncharacterised protein family (UPF0149) M001_008110 PF01494 FAD binding domain M001_008115 PF01494 FAD binding domain M001_008120 PF01571 Aminomethyltransferase folate-binding domain M001_008120 PF08669 Glycine cleavage T-protein C-terminal barrel domain M001_008125 PF01597 Glycine cleavage H-protein M001_008130 PF02347 Glycine cleavage system P-protein M001_008135 PF08447 PAS fold M001_008135 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_008150 PF00324 Amino acid permease M001_008160 PF03618 Kinase/pyrophosphorylase M001_008165 PF02896 PEP-utilising enzyme, TIM barrel domain M001_008165 PF00391 PEP-utilising enzyme, mobile domain M001_008165 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M001_008170 PF01609 Transposase DDE domain M001_008170 PF13006 Insertion element 4 transposase N-terminal M001_008180 PF01483 Proprotein convertase P-domain M001_008180 PF00082 Subtilase family M001_008185 PF03180 NLPA lipoprotein M001_008190 PF11893 Domain of unknown function (DUF3413) M001_008190 PF00884 Sulfatase M001_008195 PF07208 Protein of unknown function (DUF1414) M001_008200 PF04245 37-kD nucleoid-associated bacterial protein M001_008205 PF01547 Bacterial extracellular solute-binding protein M001_008210 PF00528 Binding-protein-dependent transport system inner membrane component M001_008210 PF14785 Maltose transport system permease protein MalF P2 domain M001_008215 PF00528 Binding-protein-dependent transport system inner membrane component M001_008220 PF00005 ABC transporter M001_008220 PF08402 TOBE domain M001_008225 PF03976 Polyphosphate kinase 2 (PPK2) M001_008230 PF00561 alpha/beta hydrolase fold M001_008235 PF13006 Insertion element 4 transposase N-terminal M001_008235 PF01609 Transposase DDE domain M001_008245 PF01594 AI-2E family transporter M001_008255 PF07720 Tetratricopeptide repeat M001_008255 PF01435 Peptidase family M48 M001_008260 PF00578 AhpC/TSA family M001_008265 PF03960 ArsC family M001_008275 PF04336 Acyl carrier protein phosphodiesterase M001_008285 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_008290 PF01979 Amidohydrolase family M001_008295 PF03956 Lysine exporter LysO M001_008300 PF00005 ABC transporter M001_008305 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_008310 PF00528 Binding-protein-dependent transport system inner membrane component M001_008315 PF00528 Binding-protein-dependent transport system inner membrane component M001_008320 PF00849 RNA pseudouridylate synthase M001_008330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M001_008335 PF04209 homogentisate 1,2-dioxygenase M001_008345 PF02798 Glutathione S-transferase, N-terminal domain M001_008345 PF14497 Glutathione S-transferase, C-terminal domain M001_008360 PF13537 Glutamine amidotransferase domain M001_008360 PF00733 Asparagine synthase M001_008370 PF00999 Sodium/hydrogen exchanger family M001_008370 PF02254 TrkA-N domain M001_008375 PF13344 Haloacid dehalogenase-like hydrolase M001_008380 PF00962 Adenosine/AMP deaminase M001_008385 PF00107 Zinc-binding dehydrogenase M001_008385 PF08240 Alcohol dehydrogenase GroES-like domain M001_008390 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M001_008395 PF03741 Integral membrane protein TerC family M001_008395 PF03471 Transporter associated domain M001_008405 PF13183 4Fe-4S dicluster domain M001_008405 PF02913 FAD linked oxidases, C-terminal domain M001_008405 PF01565 FAD binding domain M001_008415 PF03061 Thioesterase superfamily M001_008420 PF03880 DbpA RNA binding domain M001_008420 PF00271 Helicase conserved C-terminal domain M001_008420 PF00270 DEAD/DEAH box helicase M001_008430 PF13188 PAS domain M001_008430 PF03707 Bacterial signalling protein N terminal repeat M001_008430 PF00990 Diguanylate cyclase, GGDEF domain M001_008430 PF00563 EAL domain M001_008435 PF01966 HD domain M001_008440 PF00072 Response regulator receiver domain M001_008450 PF00361 Proton-conducting membrane transporter M001_008455 PF00361 Proton-conducting membrane transporter M001_008460 PF00361 Proton-conducting membrane transporter M001_008460 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M001_008465 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M001_008470 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M001_008475 PF12838 4Fe-4S dicluster domain M001_008480 PF00146 NADH dehydrogenase M001_008485 PF00384 Molybdopterin oxidoreductase M001_008485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M001_008485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M001_008490 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region M001_008490 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M001_008500 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M001_008500 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M001_008505 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M001_008510 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M001_008530 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M001_008530 PF00326 Prolyl oligopeptidase family M001_008535 PF07715 TonB-dependent Receptor Plug Domain M001_008535 PF00593 TonB dependent receptor M001_008540 PF00691 OmpA family M001_008540 PF13677 Membrane MotB of proton-channel complex MotA/MotB M001_008545 PF01618 MotA/TolQ/ExbB proton channel family M001_008560 PF04536 TPM domain M001_008570 PF03411 Penicillin-insensitive murein endopeptidase M001_008575 PF00528 Binding-protein-dependent transport system inner membrane component M001_008580 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_008585 PF00528 Binding-protein-dependent transport system inner membrane component M001_008590 PF00005 ABC transporter M001_008600 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) M001_008605 PF00248 Aldo/keto reductase family M001_008615 PF00106 short chain dehydrogenase M001_008620 PF01212 Beta-eliminating lyase M001_008630 PF00072 Response regulator receiver domain M001_008635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008635 PF03466 LysR substrate binding domain M001_008640 PF13188 PAS domain M001_008640 PF03707 Bacterial signalling protein N terminal repeat M001_008640 PF00990 Diguanylate cyclase, GGDEF domain M001_008640 PF00563 EAL domain M001_008645 PF03806 AbgT putative transporter family M001_008650 PF00881 Nitroreductase family M001_008665 PF07690 Major Facilitator Superfamily M001_008670 PF03466 LysR substrate binding domain M001_008670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008675 PF03466 LysR substrate binding domain M001_008675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008680 PF00925 GTP cyclohydrolase II M001_008685 PF02224 Cytidylate kinase M001_008690 PF00575 S1 RNA binding domain M001_008695 PF00216 Bacterial DNA-binding protein M001_008705 PF18073 Rubredoxin metal binding domain M001_008710 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M001_008725 PF06508 Queuosine biosynthesis protein QueC M001_008730 PF04055 Radical SAM superfamily M001_008735 PF12843 Putative quorum-sensing-regulated virulence factor M001_008740 PF01923 Cobalamin adenosyltransferase M001_008745 PF00816 H-NS histone family M001_008750 PF03553 Na+/H+ antiporter family M001_008755 PF00265 Thymidine kinase M001_008770 PF10722 Putative bacterial sensory transduction regulator M001_008780 PF13662 Toprim domain M001_008780 PF02132 RecR protein M001_008785 PF00183 Hsp90 protein M001_008785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_008790 PF00005 ABC transporter M001_008795 PF00005 ABC transporter M001_008795 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_008800 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_008800 PF00528 Binding-protein-dependent transport system inner membrane component M001_008805 PF00528 Binding-protein-dependent transport system inner membrane component M001_008810 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_008815 PF02954 Bacterial regulatory protein, Fis family M001_008815 PF00158 Sigma-54 interaction domain M001_008820 PF04012 PspA/IM30 family M001_008825 PF06667 Phage shock protein B M001_008835 PF04317 YcjX-like family, DUF463 M001_008840 PF05128 Domain of unknown function (DUF697) M001_008845 PF00351 Biopterin-dependent aromatic amino acid hydroxylase M001_008850 PF01329 Pterin 4 alpha carbinolamine dehydratase M001_008855 PF00158 Sigma-54 interaction domain M001_008855 PF18024 Helix-turn-helix domain M001_008865 PF00990 Diguanylate cyclase, GGDEF domain M001_008865 PF17152 Periplasmic sensor domain M001_008870 PF00691 OmpA family M001_008875 PF03741 Integral membrane protein TerC family M001_008885 PF08891 YfcL protein M001_008890 PF00501 AMP-binding enzyme M001_008895 PF01053 Cys/Met metabolism PLP-dependent enzyme M001_008905 PF13460 NAD(P)H-binding M001_008910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008910 PF03466 LysR substrate binding domain M001_008915 PF03466 LysR substrate binding domain M001_008915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008920 PF07690 Major Facilitator Superfamily M001_008925 PF02678 Pirin M001_008925 PF05726 Pirin C-terminal cupin domain M001_008930 PF00857 Isochorismatase family M001_008935 PF03466 LysR substrate binding domain M001_008935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008940 PF03466 LysR substrate binding domain M001_008940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008945 PF08267 Cobalamin-independent synthase, N-terminal domain M001_008945 PF01717 Cobalamin-independent synthase, Catalytic domain M001_008955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_008955 PF03466 LysR substrate binding domain M001_008960 PF00232 Glycosyl hydrolase family 1 M001_008965 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding M001_008965 PF18381 YcaO cyclodehydratase C-terminal domain M001_008970 PF01226 Formate/nitrite transporter M001_008975 PF02901 Pyruvate formate lyase-like M001_008975 PF01228 Glycine radical M001_008980 PF03692 Putative zinc- or iron-chelating domain M001_008995 PF00343 Carbohydrate phosphorylase M001_009000 PF00939 Sodium:sulfate symporter transmembrane region M001_009005 PF00085 Thioredoxin M001_009010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_009010 PF00072 Response regulator receiver domain M001_009010 PF00672 HAMP domain M001_009010 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M001_009010 PF01627 Hpt domain M001_009010 PF00512 His Kinase A (phospho-acceptor) domain M001_009015 PF00005 ABC transporter M001_009015 PF00664 ABC transporter transmembrane region M001_009020 PF00664 ABC transporter transmembrane region M001_009020 PF00005 ABC transporter M001_009045 PF08543 Phosphomethylpyrimidine kinase M001_009050 PF13006 Insertion element 4 transposase N-terminal M001_009050 PF01609 Transposase DDE domain M001_009055 PF00465 Iron-containing alcohol dehydrogenase M001_009070 PF13673 Acetyltransferase (GNAT) domain M001_009080 PF00285 Citrate synthase, C-terminal domain M001_009085 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M001_009090 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M001_009095 PF00890 FAD binding domain M001_009095 PF02910 Fumarate reductase flavoprotein C-term M001_009100 PF13085 2Fe-2S iron-sulfur cluster binding domain M001_009105 PF16078 2-oxoglutarate dehydrogenase N-terminus M001_009105 PF00676 Dehydrogenase E1 component M001_009105 PF16870 2-oxoglutarate dehydrogenase C-terminal M001_009105 PF02779 Transketolase, pyrimidine binding domain M001_009110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M001_009110 PF02817 e3 binding domain M001_009110 PF00364 Biotin-requiring enzyme M001_009115 PF00549 CoA-ligase M001_009115 PF08442 ATP-grasp domain M001_009120 PF02629 CoA binding domain M001_009120 PF00549 CoA-ligase M001_009130 PF01266 FAD dependent oxidoreductase M001_009135 PF00528 Binding-protein-dependent transport system inner membrane component M001_009140 PF00005 ABC transporter M001_009150 PF00392 Bacterial regulatory proteins, gntR family M001_009150 PF07702 UTRA domain M001_009155 PF00266 Aminotransferase class-V M001_009160 PF00202 Aminotransferase class-III M001_009180 PF03918 Cytochrome C biogenesis protein M001_009185 PF08534 Redoxin M001_009190 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M001_009190 PF01578 Cytochrome C assembly protein M001_009195 PF03916 Polysulphide reductase, NrfD M001_009200 PF13247 4Fe-4S dicluster domain M001_009200 PF00037 4Fe-4S binding domain M001_009205 PF13435 Cytochrome c554 and c-prime M001_009205 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) M001_009210 PF02335 Cytochrome c552 M001_009220 PF13183 4Fe-4S dicluster domain M001_009220 PF02754 Cysteine-rich domain M001_009225 PF00890 FAD binding domain M001_009230 PF04324 BFD-like [2Fe-2S] binding domain M001_009230 PF01266 FAD dependent oxidoreductase M001_009235 PF02810 SEC-C motif M001_009240 PF00672 HAMP domain M001_009240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_009240 PF17200 Single Cache domain 2 M001_009245 PF01047 MarR family M001_009245 PF00480 ROK family M001_009255 PF01925 Sulfite exporter TauE/SafE M001_009260 PF03466 LysR substrate binding domain M001_009260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_009265 PF00892 EamA-like transporter family M001_009270 PF14525 AraC-binding-like domain M001_009270 PF12833 Helix-turn-helix domain M001_009275 PF11398 Protein of unknown function (DUF2813) M001_009285 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M001_009285 PF00128 Alpha amylase, catalytic domain M001_009325 PF00883 Cytosol aminopeptidase family, catalytic domain M001_009325 PF02789 Cytosol aminopeptidase family, N-terminal domain M001_009330 PF13419 Haloacid dehalogenase-like hydrolase M001_009345 PF01207 Dihydrouridine synthase (Dus) M001_009350 PF04304 Protein of unknown function (DUF454) M001_009355 PF00156 Phosphoribosyl transferase domain M001_009360 PF12170 DNA polymerase III tau subunit V interacting with alpha M001_009360 PF12169 DNA polymerase III subunits gamma and tau domain III M001_009360 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding M001_009365 PF02575 YbaB/EbfC DNA-binding family M001_009370 PF01261 Xylose isomerase-like TIM barrel M001_009375 PF03466 LysR substrate binding domain M001_009375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_009385 PF03279 Bacterial lipid A biosynthesis acyltransferase M001_009395 PF03279 Bacterial lipid A biosynthesis acyltransferase M001_009410 PF00990 Diguanylate cyclase, GGDEF domain M001_009410 PF17151 Periplasmic sensor domain M001_009420 PF03104 DNA polymerase family B, exonuclease domain M001_009420 PF00136 DNA polymerase family B M001_009435 PF01863 Protein of unknown function DUF45 M001_009450 PF03606 C4-dicarboxylate anaerobic carrier M001_009465 PF01266 FAD dependent oxidoreductase M001_009465 PF05430 S-adenosyl-L-methionine-dependent methyltransferase M001_009470 PF02801 Beta-ketoacyl synthase, C-terminal domain M001_009470 PF00109 Beta-ketoacyl synthase, N-terminal domain M001_009480 PF02080 TrkA-C domain M001_009480 PF06826 Predicted Permease Membrane Region M001_009495 PF12344 Ultra-violet resistance protein B M001_009495 PF00271 Helicase conserved C-terminal domain M001_009495 PF04851 Type III restriction enzyme, res subunit M001_009495 PF17757 UvrB interaction domain M001_009495 PF02151 UvrB/uvrC motif M001_009505 PF09335 SNARE associated Golgi protein M001_009510 PF02600 Disulfide bond formation protein DsbB M001_009515 PF06450 Bacterial Na+/H+ antiporter B (NhaB) M001_009520 PF00392 Bacterial regulatory proteins, gntR family M001_009520 PF07840 FadR C-terminal domain M001_009530 PF07152 YaeQ protein M001_009600 PF01554 MatE M001_009605 PF06786 Uncharacterised protein family (UPF0253) M001_009615 PF00677 Lumazine binding domain M001_009625 PF13419 Haloacid dehalogenase-like hydrolase M001_009630 PF01370 NAD dependent epimerase/dehydratase family M001_009630 PF02222 ATP-grasp domain M001_009635 PF00892 EamA-like transporter family M001_009640 PF02525 Flavodoxin-like fold M001_009665 PF17783 CvfB-like winged helix domain M001_009665 PF13509 S1 domain M001_009675 PF04269 Protein of unknown function, DUF440 M001_009680 PF00912 Transglycosylase M001_009685 PF04269 Protein of unknown function, DUF440 M001_009690 PF03776 Septum formation topological specificity factor MinE M001_009695 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M001_009700 PF05209 Septum formation inhibitor MinC, N-terminal domain M001_009700 PF03775 Septum formation inhibitor MinC, C-terminal domain M001_009705 PF05166 YcgL domain M001_009710 PF03313 Serine dehydratase alpha chain M001_009710 PF03315 Serine dehydratase beta chain M001_009715 PF03315 Serine dehydratase beta chain M001_009715 PF03313 Serine dehydratase alpha chain M001_009720 PF06865 Pyrimidine/purine nucleoside phosphorylase M001_009725 PF00375 Sodium:dicarboxylate symporter family M001_009730 PF00365 Phosphofructokinase M001_009735 PF00121 Triosephosphate isomerase M001_009740 PF02698 DUF218 domain M001_009745 PF13847 Methyltransferase domain M001_009750 PF17193 MukF C-terminal domain M001_009750 PF17192 MukF middle domain M001_009750 PF03882 MukF winged-helix domain M001_009755 PF04288 MukE-like family M001_009760 PF04310 MukB N-terminal M001_009760 PF16330 MukB hinge domain M001_009765 PF05036 Sporulation related domain M001_009765 PF03330 Lytic transglycolase M001_009785 PF01327 Polypeptide deformylase M001_009815 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M001_009815 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M001_009820 PF00291 Pyridoxal-phosphate dependent enzyme M001_009825 PF07687 Peptidase dimerisation domain M001_009825 PF01546 Peptidase family M20/M25/M40 M001_009830 PF01979 Amidohydrolase family M001_009835 PF00696 Amino acid kinase family M001_009840 PF07690 Major Facilitator Superfamily M001_009845 PF00005 ABC transporter M001_009850 PF01032 FecCD transport family M001_009860 PF00892 EamA-like transporter family M001_009865 PF01699 Sodium/calcium exchanger protein M001_009870 PF13478 XdhC Rossmann domain M001_009870 PF02625 XdhC and CoxI family M001_009880 PF12804 MobA-like NTP transferase domain M001_009885 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_009885 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M001_009890 PF01979 Amidohydrolase family M001_009895 PF00941 FAD binding domain in molybdopterin dehydrogenase M001_009900 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M001_009900 PF01799 [2Fe-2S] binding domain M001_009900 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M001_009905 PF00860 Permease family M001_009910 PF01979 Amidohydrolase family M001_009915 PF00860 Permease family M001_009920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase M001_009920 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain M001_009925 PF00941 FAD binding domain in molybdopterin dehydrogenase M001_009925 PF03450 CO dehydrogenase flavoprotein C-terminal domain M001_009930 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_009930 PF01799 [2Fe-2S] binding domain M001_009935 PF05433 Glycine zipper 2TM domain M001_009945 PF03606 C4-dicarboxylate anaerobic carrier M001_009950 PF13193 AMP-binding enzyme C-terminal domain M001_009950 PF00501 AMP-binding enzyme M001_009955 PF00990 Diguanylate cyclase, GGDEF domain M001_009955 PF07694 5TMR of 5TMR-LYT M001_009965 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M001_009965 PF01502 Phosphoribosyl-AMP cyclohydrolase M001_009970 PF00977 Histidine biosynthesis protein M001_009975 PF00977 Histidine biosynthesis protein M001_009980 PF00117 Glutamine amidotransferase class-I M001_009985 PF08645 Polynucleotide kinase 3 phosphatase M001_009985 PF00475 Imidazoleglycerol-phosphate dehydratase M001_009990 PF00155 Aminotransferase class I and II M001_009995 PF00815 Histidinol dehydrogenase M001_010000 PF08029 HisG, C-terminal domain M001_010000 PF01634 ATP phosphoribosyltransferase M001_010010 PF13307 Helicase C-terminal domain M001_010010 PF04851 Type III restriction enzyme, res subunit M001_010015 PF00814 Glycoprotease family M001_010025 PF12697 Alpha/beta hydrolase family M001_010030 PF13193 AMP-binding enzyme C-terminal domain M001_010030 PF00501 AMP-binding enzyme M001_010035 PF00570 HRDC domain M001_010035 PF01612 3'-5' exonuclease M001_010040 PF00753 Metallo-beta-lactamase superfamily M001_010050 PF02769 AIR synthase related protein, C-terminal domain M001_010050 PF00586 AIR synthase related protein, N-terminal domain M001_010060 PF10672 S-adenosylmethionine-dependent methyltransferase M001_010060 PF17785 PUA-like domain M001_010065 PF12729 Four helix bundle sensory module for signal transduction M001_010065 PF00672 HAMP domain M001_010065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_010070 PF00708 Acylphosphatase M001_010080 PF13006 Insertion element 4 transposase N-terminal M001_010080 PF01609 Transposase DDE domain M001_010085 PF01588 Putative tRNA binding domain M001_010085 PF09334 tRNA synthetases class I (M) M001_010085 PF08264 Anticodon-binding domain of tRNA M001_010090 PF10609 NUBPL iron-transfer P-loop NTPase M001_010095 PF00485 Phosphoribulokinase / Uridine kinase family M001_010100 PF00692 dUTPase M001_010105 PF01384 Phosphate transporter family M001_010110 PF06945 Protein of unknown function (DUF1289) M001_010115 PF06725 3D domain M001_010115 PF03562 MltA specific insert domain M001_010120 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_010125 PF00268 Ribonucleotide reductase, small chain M001_010130 PF00317 Ribonucleotide reductase, all-alpha domain M001_010130 PF02867 Ribonucleotide reductase, barrel domain M001_010130 PF03477 ATP cone domain M001_010135 PF13419 Haloacid dehalogenase-like hydrolase M001_010145 PF03989 DNA gyrase C-terminal domain, beta-propeller M001_010145 PF00521 DNA gyrase/topoisomerase IV, subunit A M001_010150 PF00128 Alpha amylase, catalytic domain M001_010160 PF04055 Radical SAM superfamily M001_010170 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M001_010170 PF02824 TGS domain M001_010170 PF03129 Anticodon binding domain M001_010170 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M001_010175 PF05198 Translation initiation factor IF-3, N-terminal domain M001_010175 PF00707 Translation initiation factor IF-3, C-terminal domain M001_010180 PF01632 Ribosomal protein L35 M001_010185 PF00453 Ribosomal protein L20 M001_010190 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M001_010190 PF01409 tRNA synthetases class II core domain (F) M001_010195 PF03483 B3/4 domain M001_010195 PF03484 tRNA synthetase B5 domain M001_010195 PF03147 Ferredoxin-fold anticodon binding domain M001_010195 PF01588 Putative tRNA binding domain M001_010195 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M001_010200 PF00216 Bacterial DNA-binding protein M001_010205 PF00072 Response regulator receiver domain M001_010205 PF00512 His Kinase A (phospho-acceptor) domain M001_010205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_010205 PF09456 RcsC Alpha-Beta-Loop (ABL) M001_010220 PF02146 Sir2 family M001_010230 PF17152 Periplasmic sensor domain M001_010230 PF00990 Diguanylate cyclase, GGDEF domain M001_010235 PF00356 Bacterial regulatory proteins, lacI family M001_010240 PF00294 pfkB family carbohydrate kinase M001_010245 PF13407 Periplasmic binding protein domain M001_010250 PF02653 Branched-chain amino acid transport system / permease component M001_010255 PF00005 ABC transporter M001_010260 PF05025 RbsD / FucU transport protein family M001_010265 PF02798 Glutathione S-transferase, N-terminal domain M001_010265 PF00043 Glutathione S-transferase, C-terminal domain M001_010280 PF13416 Bacterial extracellular solute-binding protein M001_010285 PF00528 Binding-protein-dependent transport system inner membrane component M001_010290 PF00528 Binding-protein-dependent transport system inner membrane component M001_010295 PF00005 ABC transporter M001_010295 PF08402 TOBE domain M001_010310 PF01171 PP-loop family M001_010315 PF00582 Universal stress protein family M001_010320 PF00027 Cyclic nucleotide-binding domain M001_010320 PF13545 Crp-like helix-turn-helix domain M001_010335 PF00403 Heavy-metal-associated domain M001_010345 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP M001_010345 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M001_010360 PF00115 Cytochrome C and Quinol oxidase polypeptide I M001_010370 PF13185 GAF domain M001_010375 PF17516 ProQ C-terminal domain M001_010375 PF04352 ProQ/FINO family M001_010380 PF03572 Peptidase family S41 M001_010380 PF00595 PDZ domain M001_010380 PF17804 Tail specific protease N-terminal domain M001_010380 PF11818 C-terminal domain of tail specific protease (DUF3340) M001_010385 PF01433 Peptidase family M1 domain M001_010385 PF17432 Domain of unknown function (DUF3458_C) ARM repeats M001_010385 PF11940 Domain of unknown function (DUF3458) Ig-like fold M001_010395 PF05088 Bacterial NAD-glutamate dehydrogenase M001_010400 PF01180 Dihydroorotate dehydrogenase M001_010405 PF07126 Cell-division protein ZapC M001_010415 PF01197 Ribosomal protein L31 M001_010420 PF00444 Ribosomal protein L36 M001_010425 PF10672 S-adenosylmethionine-dependent methyltransferase M001_010425 PF02926 THUMP domain M001_010425 PF01170 Putative RNA methylase family UPF0020 M001_010440 PF04957 Ribosome modulation factor M001_010445 PF07977 FabA-like domain M001_010450 PF13654 AAA domain M001_010450 PF05362 Lon protease (S16) C-terminal proteolytic domain M001_010495 PF05707 Zonular occludens toxin (Zot) M001_010530 PF07130 YebG protein M001_010535 PF01674 Lipase (class 2) M001_010540 PF00106 short chain dehydrogenase M001_010565 PF06974 Protein of unknown function (DUF1298) M001_010565 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain M001_010580 PF01609 Transposase DDE domain M001_010580 PF13006 Insertion element 4 transposase N-terminal M001_010585 PF03972 MmgE/PrpD family M001_010590 PF00285 Citrate synthase, C-terminal domain M001_010605 PF04403 Paraquat-inducible protein A M001_010610 PF02470 MlaD protein M001_010615 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF M001_010615 PF01189 16S rRNA methyltransferase RsmB/F M001_010615 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M001_010625 PF00589 Phage integrase family M001_010630 PF01026 TatD related DNase M001_010635 PF09115 DNA polymerase III, delta subunit, C terminal M001_010640 PF02223 Thymidylate kinase M001_010645 PF02618 YceG-like family M001_010650 PF01063 Amino-transferase class IV M001_010655 PF02801 Beta-ketoacyl synthase, C-terminal domain M001_010655 PF00109 Beta-ketoacyl synthase, N-terminal domain M001_010660 PF00550 Phosphopantetheine attachment site M001_010670 PF00698 Acyl transferase domain M001_010675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M001_010675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M001_010680 PF02504 Fatty acid synthesis protein M001_010685 PF01783 Ribosomal L32p protein family M001_010690 PF02620 Large ribosomal RNA subunit accumulation protein YceD M001_010695 PF02545 Maf-like protein M001_010700 PF13419 Haloacid dehalogenase-like hydrolase M001_010705 PF00849 RNA pseudouridylate synthase M001_010705 PF01479 S4 domain M001_010710 PF12111 Polyribonucleotide phosphorylase C terminal M001_010710 PF10150 Ribonuclease E/G family M001_010710 PF00575 S1 RNA binding domain M001_010720 PF02378 Phosphotransferase system, EIIC M001_010720 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M001_010725 PF00294 pfkB family carbohydrate kinase M001_010730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_010730 PF00381 PTS HPr component phosphorylation site M001_010735 PF00356 Bacterial regulatory proteins, lacI family M001_010735 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M001_010740 PF03222 Tryptophan/tyrosine permease family M001_010750 PF01124 MAPEG family M001_010760 PF00271 Helicase conserved C-terminal domain M001_010760 PF00270 DEAD/DEAH box helicase M001_010770 PF01264 Chorismate synthase M001_010775 PF05175 Methyltransferase small domain M001_010780 PF01713 Smr domain M001_010785 PF00990 Diguanylate cyclase, GGDEF domain M001_010785 PF08448 PAS fold M001_010790 PF00300 Histidine phosphatase superfamily (branch 1) M001_010800 PF08329 Chitinase A, N-terminal domain M001_010800 PF00704 Glycosyl hydrolases family 18 M001_010810 PF08274 PhnA Zinc-Ribbon M001_010810 PF03831 PhnA domain M001_010820 PF00425 chorismate binding enzyme M001_010820 PF04715 Anthranilate synthase component I, N terminal region M001_010825 PF00293 NUDIX domain M001_010830 PF03222 Tryptophan/tyrosine permease family M001_010840 PF00375 Sodium:dicarboxylate symporter family M001_010845 PF00271 Helicase conserved C-terminal domain M001_010845 PF00570 HRDC domain M001_010845 PF16124 RecQ zinc-binding M001_010845 PF09382 RQC domain M001_010845 PF00270 DEAD/DEAH box helicase M001_010850 PF06798 PrkA serine protein kinase C-terminal domain M001_010850 PF08298 PrkA AAA domain M001_010855 PF04285 Protein of unknown function (DUF444) M001_010860 PF04293 SpoVR like protein M001_010865 PF00378 Enoyl-CoA hydratase/isomerase M001_010865 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M001_010865 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M001_010870 PF00108 Thiolase, N-terminal domain M001_010870 PF02803 Thiolase, C-terminal domain M001_010875 PF17863 AAA lid domain M001_010875 PF07726 ATPase family associated with various cellular activities (AAA) M001_010880 PF01882 Protein of unknown function DUF58 M001_010895 PF13519 von Willebrand factor type A domain M001_010905 PF08281 Sigma-70, region 4 M001_010905 PF04542 Sigma-70 region 2 M001_010915 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M001_010920 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M001_010925 PF08668 HDOD domain M001_010925 PF00563 EAL domain M001_010930 PF02803 Thiolase, C-terminal domain M001_010930 PF00108 Thiolase, N-terminal domain M001_010935 PF09278 MerR, DNA binding M001_010935 PF00376 MerR family regulatory protein M001_010940 PF01386 Ribosomal L25p family M001_010950 PF04408 Helicase associated domain (HA2) M001_010950 PF11898 Domain of unknown function (DUF3418) M001_010950 PF00271 Helicase conserved C-terminal domain M001_010950 PF00270 DEAD/DEAH box helicase M001_010950 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold M001_010955 PF02272 DHHA1 domain M001_010955 PF01743 Poly A polymerase head domain M001_010955 PF00571 CBS domain M001_010955 PF01368 DHH family M001_010960 PF01966 HD domain M001_010965 PF00884 Sulfatase M001_010970 PF07726 ATPase family associated with various cellular activities (AAA) M001_010970 PF17863 AAA lid domain M001_010985 PF13519 von Willebrand factor type A domain M001_010985 PF07584 Aerotolerance regulator N-terminal M001_010990 PF13519 von Willebrand factor type A domain M001_010990 PF07584 Aerotolerance regulator N-terminal M001_011000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_011000 PF03466 LysR substrate binding domain M001_011005 PF03781 Sulfatase-modifying factor enzyme 1 M001_011015 PF04055 Radical SAM superfamily M001_011015 PF13186 Iron-sulfur cluster-binding domain M001_011020 PF08411 Exonuclease C-terminal M001_011020 PF00929 Exonuclease M001_011035 PF03788 LrgA family M001_011040 PF04172 LrgB-like family M001_011045 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region M001_011045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M001_011050 PF01212 Beta-eliminating lyase M001_011060 PF04244 Deoxyribodipyrimidine photo-lyase-related protein M001_011065 PF01266 FAD dependent oxidoreductase M001_011070 PF02774 Semialdehyde dehydrogenase, dimerisation domain M001_011070 PF01118 Semialdehyde dehydrogenase, NAD binding domain M001_011075 PF02634 FdhD/NarQ family M001_011080 PF02954 Bacterial regulatory protein, Fis family M001_011080 PF01590 GAF domain M001_011080 PF00158 Sigma-54 interaction domain M001_011095 PF12800 4Fe-4S binding domain M001_011095 PF13247 4Fe-4S dicluster domain M001_011110 PF00583 Acetyltransferase (GNAT) family M001_011115 PF02705 K+ potassium transporter M001_011120 PF00037 4Fe-4S binding domain M001_011120 PF12798 4Fe-4S binding domain M001_011125 PF00361 Proton-conducting membrane transporter M001_011130 PF00146 NADH dehydrogenase M001_011135 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M001_011135 PF00374 Nickel-dependent hydrogenase M001_011135 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M001_011140 PF12838 4Fe-4S dicluster domain M001_011145 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M001_011150 PF07450 Formate hydrogenlyase maturation protein HycH M001_011155 PF01750 Hydrogenase maturation protease M001_011165 PF12390 Selenocysteine synthase N terminal M001_011165 PF03841 L-seryl-tRNA selenium transferase M001_011170 PF09107 Elongation factor SelB, winged helix M001_011170 PF09106 Elongation factor SelB, winged helix M001_011170 PF03144 Elongation factor Tu domain 2 M001_011170 PF00009 Elongation factor Tu GTP binding domain M001_011175 PF07503 HypF finger M001_011175 PF01300 Telomere recombination M001_011175 PF00708 Acylphosphatase M001_011175 PF17788 HypF Kae1-like domain M001_011180 PF01455 HupF/HypC family M001_011185 PF01924 Hydrogenase formation hypA family M001_011190 PF00586 AIR synthase related protein, N-terminal domain M001_011190 PF02769 AIR synthase related protein, C-terminal domain M001_011195 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA M001_011200 PF02492 CobW/HypB/UreG, nucleotide-binding domain M001_011205 PF00005 ABC transporter M001_011210 PF00005 ABC transporter M001_011215 PF00528 Binding-protein-dependent transport system inner membrane component M001_011215 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_011220 PF00528 Binding-protein-dependent transport system inner membrane component M001_011225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_011230 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE M001_011235 PF01750 Hydrogenase maturation protease M001_011240 PF00374 Nickel-dependent hydrogenase M001_011245 PF03916 Polysulphide reductase, NrfD M001_011250 PF13247 4Fe-4S dicluster domain M001_011255 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal M001_011255 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M001_011260 PF00360 Phytochrome region M001_011260 PF00990 Diguanylate cyclase, GGDEF domain M001_011260 PF01590 GAF domain M001_011260 PF00563 EAL domain M001_011265 PF00862 Sucrose synthase M001_011265 PF00534 Glycosyl transferases group 1 M001_011270 PF00534 Glycosyl transferases group 1 M001_011270 PF13439 Glycosyltransferase Family 4 M001_011340 PF13439 Glycosyltransferase Family 4 M001_011340 PF00534 Glycosyl transferases group 1 M001_011345 PF07238 PilZ domain M001_011345 PF00535 Glycosyl transferase family 2 M001_011345 PF03552 Cellulose synthase M001_011350 PF02397 Bacterial sugar transferase M001_011355 PF00534 Glycosyl transferases group 1 M001_011360 PF00211 Adenylate and Guanylate cyclase catalytic domain M001_011360 PF00072 Response regulator receiver domain M001_011390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_011390 PF01627 Hpt domain M001_011390 PF00072 Response regulator receiver domain M001_011390 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M001_011390 PF00672 HAMP domain M001_011390 PF00512 His Kinase A (phospho-acceptor) domain M001_011395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_011395 PF03466 LysR substrate binding domain M001_011400 PF02129 X-Pro dipeptidyl-peptidase (S15 family) M001_011410 PF07690 Major Facilitator Superfamily M001_011435 PF02796 Helix-turn-helix domain of resolvase M001_011435 PF00239 Resolvase, N terminal domain M001_011450 PF04002 RadC-like JAB domain M001_011475 PF02384 N-6 DNA Methylase M001_011565 PF01925 Sulfite exporter TauE/SafE M001_011570 PF13520 Amino acid permease M001_011580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M001_011580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M001_011585 PF00378 Enoyl-CoA hydratase/isomerase M001_011590 PF00378 Enoyl-CoA hydratase/isomerase M001_011595 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M001_011595 PF02770 Acyl-CoA dehydrogenase, middle domain M001_011595 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M001_011600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M001_011600 PF02770 Acyl-CoA dehydrogenase, middle domain M001_011600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M001_011605 PF01039 Carboxyl transferase domain M001_011610 PF00378 Enoyl-CoA hydratase/isomerase M001_011615 PF00364 Biotin-requiring enzyme M001_011615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M001_011615 PF02785 Biotin carboxylase C-terminal domain M001_011615 PF00289 Biotin carboxylase, N-terminal domain M001_011620 PF00682 HMGL-like M001_011625 PF09278 MerR, DNA binding M001_011625 PF00376 MerR family regulatory protein M001_011640 PF01184 GPR1/FUN34/yaaH family M001_011645 PF12706 Beta-lactamase superfamily domain M001_011650 PF02885 Glycosyl transferase family, helical bundle domain M001_011650 PF00591 Glycosyl transferase family, a/b domain M001_011650 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M001_011655 PF01791 DeoC/LacD family aldolase M001_011665 PF12146 Serine aminopeptidase, S33 M001_011670 PF03466 LysR substrate binding domain M001_011670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_011675 PF12146 Serine aminopeptidase, S33 M001_011680 PF06167 Glucose-regulated metallo-peptidase M90 M001_011690 PF01235 Sodium:alanine symporter family M001_011725 PF00378 Enoyl-CoA hydratase/isomerase M001_011740 PF04341 Protein of unknown function, DUF485 M001_011745 PF00474 Sodium:solute symporter family M001_011750 PF12848 ABC transporter M001_011750 PF00005 ABC transporter M001_011755 PF13145 PPIC-type PPIASE domain M001_011760 PF00216 Bacterial DNA-binding protein M001_011765 PF00004 ATPase family associated with various cellular activities (AAA) M001_011765 PF05362 Lon protease (S16) C-terminal proteolytic domain M001_011765 PF02190 ATP-dependent protease La (LON) substrate-binding domain M001_011770 PF10431 C-terminal, D2-small domain, of ClpB protein M001_011770 PF06689 ClpX C4-type zinc finger M001_011770 PF07724 AAA domain (Cdc48 subfamily) M001_011775 PF00574 Clp protease M001_011780 PF05697 Bacterial trigger factor protein (TF) M001_011780 PF05698 Bacterial trigger factor protein (TF) C-terminus M001_011780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_011795 PF02687 FtsX-like permease family M001_011795 PF12704 MacB-like periplasmic core domain M001_011800 PF00005 ABC transporter M001_011805 PF02687 FtsX-like permease family M001_011805 PF12704 MacB-like periplasmic core domain M001_011815 PF00270 DEAD/DEAH box helicase M001_011815 PF00271 Helicase conserved C-terminal domain M001_011815 PF02559 CarD-like/TRCF domain M001_011815 PF17757 UvrB interaction domain M001_011815 PF03461 TRCF domain M001_011820 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain M001_011825 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_011830 PF00892 EamA-like transporter family M001_011840 PF00300 Histidine phosphatase superfamily (branch 1) M001_011845 PF00675 Insulinase (Peptidase family M16) M001_011845 PF05193 Peptidase M16 inactive domain M001_011845 PF16187 Middle or third domain of peptidase_M16 M001_011850 PF05724 Thiopurine S-methyltransferase (TPMT) M001_011865 PF12833 Helix-turn-helix domain M001_011865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M001_011865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M001_011865 PF02805 Metal binding domain of Ada M001_011890 PF02540 NAD synthase M001_011890 PF00958 GMP synthase C terminal domain M001_011890 PF00117 Glutamine amidotransferase class-I M001_011895 PF00571 CBS domain M001_011895 PF00478 IMP dehydrogenase / GMP reductase domain M001_011900 PF01292 Prokaryotic cytochrome b561 M001_011905 PF02601 Exonuclease VII, large subunit M001_011905 PF13742 OB-fold nucleic acid binding domain M001_011910 PF00392 Bacterial regulatory proteins, gntR family M001_011910 PF07702 UTRA domain M001_011915 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_011915 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M001_011915 PF02378 Phosphotransferase system, EIIC M001_011920 PF01074 Glycosyl hydrolases family 38 N-terminal domain M001_011920 PF07748 Glycosyl hydrolases family 38 C-terminal domain M001_011920 PF09261 Alpha mannosidase middle domain M001_011925 PF01820 D-ala D-ala ligase N-terminus M001_011925 PF07478 D-ala D-ala ligase C-terminus M001_011935 PF00255 Glutathione peroxidase M001_011940 PF00270 DEAD/DEAH box helicase M001_011940 PF00271 Helicase conserved C-terminal domain M001_011945 PF04055 Radical SAM superfamily M001_011950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_011950 PF00672 HAMP domain M001_011955 PF00793 DAHP synthetase I family M001_011960 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M001_011965 PF00266 Aminotransferase class-V M001_011970 PF01012 Electron transfer flavoprotein domain M001_011970 PF00766 Electron transfer flavoprotein FAD-binding domain M001_011975 PF01012 Electron transfer flavoprotein domain M001_011985 PF01544 CorA-like Mg2+ transporter protein M001_011990 PF11143 Protein of unknown function (DUF2919) M001_012000 PF07273 Protein of unknown function (DUF1439) M001_012010 PF00483 Nucleotidyl transferase M001_012015 PF00563 EAL domain M001_012015 PF03707 Bacterial signalling protein N terminal repeat M001_012015 PF00990 Diguanylate cyclase, GGDEF domain M001_012030 PF00294 pfkB family carbohydrate kinase M001_012040 PF00762 Ferrochelatase M001_012045 PF05191 Adenylate kinase, active site lid M001_012050 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) M001_012055 PF00156 Phosphoribosyl transferase domain M001_012060 PF02674 Colicin V production protein M001_012070 PF02403 Seryl-tRNA synthetase N-terminal domain M001_012070 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M001_012075 PF00004 ATPase family associated with various cellular activities (AAA) M001_012075 PF16193 AAA C-terminal domain M001_012075 PF12002 MgsA AAA+ ATPase C terminal M001_012080 PF03548 Outer membrane lipoprotein carrier protein LolA M001_012085 PF17854 FtsK alpha domain M001_012085 PF01580 FtsK/SpoIIIE family M001_012085 PF09397 Ftsk gamma domain M001_012085 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M001_012090 PF01037 Lrp/AsnC ligand binding domain M001_012095 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M001_012095 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M001_012100 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_012105 PF00990 Diguanylate cyclase, GGDEF domain M001_012105 PF17158 Membrane-associated sensor, integral membrane domain M001_012110 PF05433 Glycine zipper 2TM domain M001_012115 PF03588 Leucyl/phenylalanyl-tRNA protein transferase M001_012120 PF04377 Arginine-tRNA-protein transferase, C terminus M001_012120 PF04376 Arginine-tRNA-protein transferase, N terminus M001_012125 PF01176 Translation initiation factor 1A / IF-1 M001_012130 PF07724 AAA domain (Cdc48 subfamily) M001_012130 PF17871 AAA lid domain M001_012130 PF02861 Clp amino terminal domain, pathogenicity island component M001_012130 PF10431 C-terminal, D2-small domain, of ClpB protein M001_012130 PF00004 ATPase family associated with various cellular activities (AAA) M001_012135 PF02617 ATP-dependent Clp protease adaptor protein ClpS M001_012140 PF00313 'Cold-shock' DNA-binding domain M001_012145 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M001_012145 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M001_012165 PF00072 Response regulator receiver domain M001_012165 PF00486 Transcriptional regulatory protein, C terminal M001_012170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_012170 PF00672 HAMP domain M001_012170 PF00512 His Kinase A (phospho-acceptor) domain M001_012180 PF09924 Uncharacterised conserved protein (DUF2156) M001_012180 PF03706 Lysylphosphatidylglycerol synthase TM region M001_012220 PF02954 Bacterial regulatory protein, Fis family M001_012220 PF06505 Activator of aromatic catabolism M001_012220 PF00158 Sigma-54 interaction domain M001_012220 PF02830 V4R domain M001_012225 PF00004 ATPase family associated with various cellular activities (AAA) M001_012225 PF07724 AAA domain (Cdc48 subfamily) M001_012225 PF17871 AAA lid domain M001_012225 PF10431 C-terminal, D2-small domain, of ClpB protein M001_012275 PF13356 Arm DNA-binding domain M001_012275 PF00589 Phage integrase family M001_012290 PF12833 Helix-turn-helix domain M001_012295 PF13592 Winged helix-turn helix M001_012295 PF13358 DDE superfamily endonuclease M001_012310 PF13737 Transposase DDE domain M001_012345 PF00689 Cation transporting ATPase, C-terminus M001_012345 PF00690 Cation transporter/ATPase, N-terminus M001_012355 PF03466 LysR substrate binding domain M001_012355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_012360 PF01810 LysE type translocator M001_012370 PF11922 Domain of unknown function (DUF3440) M001_012370 PF01507 Phosphoadenosine phosphosulfate reductase family M001_012375 PF02195 ParB-like nuclease domain M001_012395 PF00563 EAL domain M001_012395 PF12792 CSS motif domain associated with EAL M001_012405 PF01609 Transposase DDE domain M001_012405 PF05598 Transposase domain (DUF772) M001_012410 PF09264 Vibrio cholerae sialidase, lectin insertion M001_012410 PF13088 BNR repeat-like domain M001_012415 PF04074 YhcH/YjgK/YiaL M001_012420 PF00474 Sodium:solute symporter family M001_012425 PF00480 ROK family M001_012430 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M001_012435 PF01380 SIS domain M001_012435 PF01418 Helix-turn-helix domain, rpiR family M001_012440 PF00701 Dihydrodipicolinate synthetase family M001_012470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M001_012470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M001_012470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M001_012475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M001_012480 PF00535 Glycosyl transferase family 2 M001_012485 PF01370 NAD dependent epimerase/dehydratase family M001_012485 PF00551 Formyl transferase M001_012485 PF02911 Formyl transferase, C-terminal domain M001_012490 PF01522 Polysaccharide deacetylase M001_012495 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase M001_012500 PF00892 EamA-like transporter family M001_012505 PF00893 Small Multidrug Resistance protein M001_012515 PF00816 H-NS histone family M001_012525 PF13148 Protein of unknown function (DUF3987) M001_012540 PF00239 Resolvase, N terminal domain M001_012540 PF02796 Helix-turn-helix domain of resolvase M001_012570 PF04002 RadC-like JAB domain M001_012625 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A M001_012630 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase M001_012635 PF02378 Phosphotransferase system, EIIC M001_012635 PF00367 phosphotransferase system, EIIB M001_012635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M001_012640 PF01380 SIS domain M001_012640 PF01418 Helix-turn-helix domain, rpiR family M001_012650 PF01740 STAS domain M001_012650 PF00916 Sulfate permease family M001_012675 PF00270 DEAD/DEAH box helicase M001_012675 PF00271 Helicase conserved C-terminal domain M001_012680 PF03350 Uncharacterized protein family, UPF0114 M001_012695 PF03239 Iron permease FTR1 family M001_012700 PF01593 Flavin containing amine oxidoreductase M001_012715 PF07690 Major Facilitator Superfamily M001_012720 PF03600 Citrate transporter M001_012730 PF00005 ABC transporter M001_012755 PF00561 alpha/beta hydrolase fold M001_012775 PF01625 Peptide methionine sulfoxide reductase M001_012780 PF00583 Acetyltransferase (GNAT) family M001_012780 PF00696 Amino acid kinase family M001_012785 PF00696 Amino acid kinase family M001_012785 PF01842 ACT domain M001_012795 PF00884 Sulfatase M001_012800 PF17676 LD-carboxypeptidase C-terminal domain M001_012800 PF02016 LD-carboxypeptidase N-terminal domain M001_012805 PF01734 Patatin-like phospholipase M001_012810 PF17179 4Fe-4S dicluster domain M001_012815 PF00175 Oxidoreductase NAD-binding domain M001_012815 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B M001_012820 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M001_012820 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M001_012820 PF13187 4Fe-4S dicluster domain M001_012825 PF10414 Sirohaem synthase dimerisation region M001_012825 PF14824 Sirohaem biosynthesis protein central M001_012825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M001_012835 PF01906 Putative heavy-metal-binding M001_012840 PF05036 Sporulation related domain M001_012845 PF08245 Mur ligase middle domain M001_012845 PF02875 Mur ligase family, glutamate ligase domain M001_012850 PF17848 Acetyl-coA carboxylase zinc finger domain M001_012850 PF01039 Carboxyl transferase domain M001_012855 PF01416 tRNA pseudouridine synthase M001_012865 PF02774 Semialdehyde dehydrogenase, dimerisation domain M001_012865 PF01118 Semialdehyde dehydrogenase, NAD binding domain M001_012870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_012870 PF11890 Domain of unknown function (DUF3410) M001_012870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M001_012875 PF01569 PAP2 superfamily M001_012880 PF00929 Exonuclease M001_012885 PF13726 Na+-H+ antiporter family M001_012885 PF03553 Na+/H+ antiporter family M001_012890 PF02769 AIR synthase related protein, C-terminal domain M001_012890 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal M001_012890 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M001_012895 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_012895 PF01464 Transglycosylase SLT domain M001_012900 PF07191 zinc-ribbons M001_012905 PF01926 50S ribosome-binding GTPase M001_012905 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M001_012910 PF13360 PQQ-like domain M001_012915 PF09976 Tetratricopeptide repeat-like domain M001_012920 PF13393 Histidyl-tRNA synthetase M001_012920 PF03129 Anticodon binding domain M001_012930 PF13464 Domain of unknown function (DUF4115) M001_012940 PF04055 Radical SAM superfamily M001_012945 PF00334 Nucleoside diphosphate kinase M001_012950 PF12404 Peptidase M001_012950 PF00883 Cytosol aminopeptidase family, catalytic domain M001_012955 PF00883 Cytosol aminopeptidase family, catalytic domain M001_012955 PF12404 Peptidase M001_012960 PF00111 2Fe-2S iron-sulfur cluster binding domain M001_012965 PF00012 Hsp70 protein M001_012970 PF07743 HSCB C-terminal oligomerisation domain M001_012970 PF00226 DnaJ domain M001_012975 PF01521 Iron-sulphur cluster biosynthesis M001_012980 PF01592 NifU-like N terminal domain M001_012985 PF00266 Aminotransferase class-V M001_012990 PF02082 Transcriptional regulator M001_012995 PF00588 SpoU rRNA Methylase family M001_013005 PF02036 SCP-2 sterol transfer family M001_013010 PF01136 Peptidase family U32 M001_013015 PF01136 Peptidase family U32 M001_013020 PF07719 Tetratricopeptide repeat M001_013020 PF13181 Tetratricopeptide repeat M001_013030 PF02355 Protein export membrane protein M001_013030 PF07549 SecD/SecF GG Motif M001_013035 PF02355 Protein export membrane protein M001_013035 PF13721 SecD export protein N-terminal TM region M001_013035 PF07549 SecD/SecF GG Motif M001_013040 PF02699 Preprotein translocase subunit M001_013045 PF01702 Queuine tRNA-ribosyltransferase M001_013050 PF02547 Queuosine biosynthesis protein M001_013055 PF00571 CBS domain M001_013060 PF10417 C-terminal domain of 1-Cys peroxiredoxin M001_013060 PF00578 AhpC/TSA family M001_013065 PF13192 Thioredoxin domain M001_013065 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_013115 PF03412 Peptidase C39 family M001_013115 PF00664 ABC transporter transmembrane region M001_013115 PF00005 ABC transporter M001_013120 PF16199 Radical_SAM C-terminal domain M001_013120 PF04055 Radical SAM superfamily M001_013125 PF00310 Glutamine amidotransferases class-II M001_013125 PF04898 Glutamate synthase central domain M001_013125 PF01645 Conserved region in glutamate synthase M001_013125 PF01493 GXGXG motif M001_013130 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M001_013130 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_013140 PF00271 Helicase conserved C-terminal domain M001_013140 PF00270 DEAD/DEAH box helicase M001_013155 PF07664 Ferrous iron transport protein B C terminus M001_013155 PF02421 Ferrous iron transport protein B M001_013155 PF07670 Nucleoside recognition M001_013165 PF01253 Translation initiation factor SUI1 M001_013170 PF01169 Uncharacterized protein family UPF0016 M001_013210 PF01406 tRNA synthetases class I (C) catalytic domain M001_013210 PF09190 DALR domain M001_013215 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M001_013225 PF00149 Calcineurin-like phosphoesterase M001_013235 PF04226 Transglycosylase associated protein M001_013240 PF08521 Two-component sensor kinase N-terminal M001_013240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_013240 PF00512 His Kinase A (phospho-acceptor) domain M001_013245 PF00072 Response regulator receiver domain M001_013245 PF00486 Transcriptional regulatory protein, C terminal M001_013260 PF01970 Tripartite tricarboxylate transporter TctA family M001_013270 PF00589 Phage integrase family M001_013270 PF02899 Phage integrase, N-terminal SAM-like domain M001_013285 PF01381 Helix-turn-helix M001_013285 PF00717 Peptidase S24-like M001_013300 PF06892 Phage regulatory protein CII (CP76) M001_013340 PF01926 50S ribosome-binding GTPase M001_013345 PF11799 impB/mucB/samB family C-terminal domain M001_013345 PF11798 IMS family HHH motif M001_013345 PF00817 impB/mucB/samB family M001_013345 PF13438 Domain of unknown function (DUF4113) M001_013350 PF00717 Peptidase S24-like M001_013420 PF01258 Prokaryotic dksA/traR C4-type zinc finger M001_013530 PF01066 CDP-alcohol phosphatidyltransferase M001_013535 PF08459 UvrC Helix-hairpin-helix N-terminal M001_013535 PF02151 UvrB/uvrC motif M001_013535 PF01541 GIY-YIG catalytic domain M001_013540 PF00072 Response regulator receiver domain M001_013540 PF00196 Bacterial regulatory proteins, luxR family M001_013545 PF02348 Cytidylyltransferase M001_013550 PF03966 Trm112p-like protein M001_013555 PF02606 Tetraacyldisaccharide-1-P 4'-kinase M001_013560 PF00005 ABC transporter M001_013560 PF00664 ABC transporter transmembrane region M001_013565 PF03772 Competence protein M001_013565 PF00753 Metallo-beta-lactamase superfamily M001_013580 PF00155 Aminotransferase class I and II M001_013590 PF03466 LysR substrate binding domain M001_013590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_013595 PF04219 Protein of unknown function, DUF M001_013600 PF03974 Ecotin M001_013605 PF03009 Glycerophosphoryl diester phosphodiesterase family M001_013610 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M001_013610 PF01266 FAD dependent oxidoreductase M001_013615 PF00455 DeoR C terminal sensor domain M001_013615 PF08220 DeoR-like helix-turn-helix domain M001_013620 PF07690 Major Facilitator Superfamily M001_013625 PF00230 Major intrinsic protein M001_013630 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M001_013630 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M001_013635 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_013635 PF00672 HAMP domain M001_013635 PF02743 Cache domain M001_013645 PF03466 LysR substrate binding domain M001_013645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_013660 PF13006 Insertion element 4 transposase N-terminal M001_013660 PF01609 Transposase DDE domain M001_013670 PF00248 Aldo/keto reductase family M001_013680 PF07690 Major Facilitator Superfamily M001_013685 PF02525 Flavodoxin-like fold M001_013700 PF05114 Protein of unknown function (DUF692) M001_013720 PF02322 Cytochrome bd terminal oxidase subunit II M001_013725 PF01654 Cytochrome bd terminal oxidase subunit I M001_013730 PF00392 Bacterial regulatory proteins, gntR family M001_013730 PF00155 Aminotransferase class I and II M001_013740 PF04391 Protein of unknown function (DUF533) M001_013745 PF03061 Thioesterase superfamily M001_013750 PF10689 Protein of unknown function (DUF2496) M001_013755 PF03466 LysR substrate binding domain M001_013755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_013760 PF07690 Major Facilitator Superfamily M001_013765 PF01479 S4 domain M001_013765 PF00849 RNA pseudouridylate synthase M001_013775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M001_013790 PF18284 DNA methylase N-terminal domain M001_013790 PF00145 C-5 cytosine-specific DNA methylase M001_013795 PF09217 Restriction endonuclease EcoRII, N-terminal M001_013795 PF09019 EcoRII C terminal M001_013800 PF02508 Rnf-Nqr subunit, membrane protein M001_013805 PF04060 Putative Fe-S cluster M001_013810 PF13375 RnfC Barrel sandwich hybrid domain M001_013810 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit M001_013810 PF10531 SLBB domain M001_013810 PF12838 4Fe-4S dicluster domain M001_013815 PF03116 NQR2, RnfD, RnfE family M001_013820 PF04205 FMN-binding domain M001_013825 PF02508 Rnf-Nqr subunit, membrane protein M001_013830 PF10576 Iron-sulfur binding domain of endonuclease III M001_013830 PF00633 Helix-hairpin-helix motif M001_013830 PF00730 HhH-GPD superfamily base excision DNA repair protein M001_013835 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M001_013840 PF00691 OmpA family M001_013840 PF18393 MotY N-terminal domain M001_013875 PF07759 Protein of unknown function (DUF1615) M001_013880 PF02142 MGS-like domain M001_013880 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M001_013880 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M001_013885 PF00117 Glutamine amidotransferase class-I M001_013885 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M001_013890 PF05173 Dihydrodipicolinate reductase, C-terminus M001_013890 PF01113 Dihydrodipicolinate reductase, N-terminus M001_013905 PF01812 5-formyltetrahydrofolate cyclo-ligase family M001_013910 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) M001_013915 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_013915 PF01842 ACT domain M001_013915 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M001_013920 PF01219 Prokaryotic diacylglycerol kinase M001_013925 PF00793 DAHP synthetase I family M001_013930 PF00583 Acetyltransferase (GNAT) family M001_013935 PF00005 ABC transporter M001_013940 PF01032 FecCD transport family M001_013955 PF00437 Type II/IV secretion system protein M001_013965 PF01168 Alanine racemase, N-terminal domain M001_013965 PF00842 Alanine racemase, C-terminal domain M001_013970 PF03741 Integral membrane protein TerC family M001_013975 PF00005 ABC transporter M001_013975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_013980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_013980 PF00005 ABC transporter M001_013985 PF00528 Binding-protein-dependent transport system inner membrane component M001_013985 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_013990 PF00528 Binding-protein-dependent transport system inner membrane component M001_013995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_014000 PF01914 MarC family integral membrane protein M001_014005 PF00171 Aldehyde dehydrogenase family M001_014005 PF00465 Iron-containing alcohol dehydrogenase M001_014015 PF01709 Transcriptional regulator M001_014020 PF01336 OB-fold nucleic acid binding domain M001_014020 PF00152 tRNA synthetases class II (D, K and N) M001_014020 PF02938 GAD domain M001_014030 PF01904 Protein of unknown function DUF72 M001_014035 PF13649 Methyltransferase domain M001_014040 PF08003 Protein of unknown function (DUF1698) M001_014060 PF10417 C-terminal domain of 1-Cys peroxiredoxin M001_014060 PF00578 AhpC/TSA family M001_014065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_014065 PF03466 LysR substrate binding domain M001_014070 PF00877 NlpC/P60 family M001_014080 PF03466 LysR substrate binding domain M001_014080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_014085 PF02447 GntP family permease M001_014090 PF00291 Pyridoxal-phosphate dependent enzyme M001_014100 PF00180 Isocitrate/isopropylmalate dehydrogenase M001_014105 PF12833 Helix-turn-helix domain M001_014110 PF01238 Phosphomannose isomerase type I M001_014115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_014115 PF00672 HAMP domain M001_014125 PF13006 Insertion element 4 transposase N-terminal M001_014125 PF01609 Transposase DDE domain M001_014140 PF05656 Protein of unknown function (DUF805) M001_014150 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M001_014150 PF00034 Cytochrome c M001_014160 PF01156 Inosine-uridine preferring nucleoside hydrolase M001_014170 PF00171 Aldehyde dehydrogenase family M001_014175 PF00440 Bacterial regulatory proteins, tetR family M001_014175 PF08359 YsiA-like protein, C-terminal region M001_014185 PF00465 Iron-containing alcohol dehydrogenase M001_014205 PF01554 MatE M001_014215 PF04325 Protein of unknown function (DUF465) M001_014225 PF00990 Diguanylate cyclase, GGDEF domain M001_014225 PF03707 Bacterial signalling protein N terminal repeat M001_014225 PF13188 PAS domain M001_014225 PF00563 EAL domain M001_014230 PF04337 Protein of unknown function, DUF480 M001_014240 PF00127 Copper binding proteins, plastocyanin/azurin family M001_014245 PF02424 ApbE family M001_014260 PF03372 Endonuclease/Exonuclease/phosphatase family M001_014265 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_014270 PF00873 AcrB/AcrD/AcrF family M001_014295 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) M001_014305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_014305 PF00529 HlyD membrane-fusion protein of T1SS M001_014310 PF00873 AcrB/AcrD/AcrF family M001_014325 PF00005 ABC transporter M001_014330 PF01032 FecCD transport family M001_014335 PF01032 FecCD transport family M001_014340 PF08021 Siderophore-interacting FAD-binding domain M001_014340 PF04954 Siderophore-interacting protein M001_014345 PF11849 Domain of unknown function (DUF3369) M001_014355 PF00929 Exonuclease M001_014360 PF00075 RNase H M001_014365 PF08241 Methyltransferase domain M001_014370 PF16123 Hydroxyacylglutathione hydrolase C-terminus M001_014370 PF00753 Metallo-beta-lactamase superfamily M001_014375 PF01464 Transglycosylase SLT domain M001_014375 PF01476 LysM domain M001_014380 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family M001_014390 PF05472 DNA replication terminus site-binding protein (Ter protein) M001_014395 PF00271 Helicase conserved C-terminal domain M001_014395 PF00176 SNF2 family N-terminal domain M001_014395 PF04434 SWIM zinc finger M001_014400 PF00672 HAMP domain M001_014400 PF00512 His Kinase A (phospho-acceptor) domain M001_014400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_014405 PF00072 Response regulator receiver domain M001_014405 PF00486 Transcriptional regulatory protein, C terminal M001_014410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M001_014410 PF00529 HlyD membrane-fusion protein of T1SS M001_014415 PF00873 AcrB/AcrD/AcrF family M001_014485 PF03527 RHS protein M001_014485 PF05593 RHS Repeat M001_014520 PF04717 Type VI secretion system, phage-baseplate injector M001_014525 PF05638 Type VI secretion system effector, Hcp M001_014540 PF01476 LysM domain M001_014540 PF17969 L,D-transpeptidase C-terminal domain M001_014540 PF03734 L,D-transpeptidase catalytic domain M001_014550 PF00939 Sodium:sulfate symporter transmembrane region M001_014555 PF01575 MaoC like domain M001_014560 PF05971 RNA methyltransferase M001_014565 PF00877 NlpC/P60 family M001_014570 PF01648 4'-phosphopantetheinyl transferase superfamily M001_014575 PF00085 Thioredoxin M001_014585 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M001_014590 PF00551 Formyl transferase M001_014590 PF01842 ACT domain M001_014600 PF13396 Phospholipase_D-nuclease N-terminal M001_014600 PF13091 PLD-like domain M001_014615 PF13006 Insertion element 4 transposase N-terminal M001_014615 PF01609 Transposase DDE domain M001_014620 PF01464 Transglycosylase SLT domain M001_014620 PF01551 Peptidase family M23 M001_014620 PF10145 Phage-related minor tail protein M001_014625 PF00230 Major intrinsic protein M001_014635 PF00155 Aminotransferase class I and II M001_014640 PF03606 C4-dicarboxylate anaerobic carrier M001_014645 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase M001_014645 PF12241 Trans-2-enoyl-CoA reductase catalytic region M001_014645 PF07055 Enoyl reductase FAD binding domain M001_014650 PF12729 Four helix bundle sensory module for signal transduction M001_014650 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_014650 PF00672 HAMP domain M001_014655 PF00300 Histidine phosphatase superfamily (branch 1) M001_014660 PF13309 HTH domain M001_014660 PF08348 YheO-like PAS domain M001_014665 PF03313 Serine dehydratase alpha chain M001_014670 PF01042 Endoribonuclease L-PSP M001_014680 PF00672 HAMP domain M001_014680 PF12729 Four helix bundle sensory module for signal transduction M001_014680 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_014695 PF17944 Arginine decarboxylase C-terminal helical extension M001_014695 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M001_014695 PF17810 Arginine decarboxylase helical bundle domain M001_014700 PF07687 Peptidase dimerisation domain M001_014700 PF01546 Peptidase family M20/M25/M40 M001_014715 PF05221 S-adenosyl-L-homocysteine hydrolase M001_014715 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M001_014725 PF04264 YceI-like domain M001_014730 PF03466 LysR substrate binding domain M001_014730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_014740 PF01268 Formate--tetrahydrofolate ligase M001_014745 PF00672 HAMP domain M001_014745 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_014745 PF17200 Single Cache domain 2 M001_014750 PF00672 HAMP domain M001_014750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_014755 PF01227 GTP cyclohydrolase I M001_014760 PF03454 MoeA C-terminal region (domain IV) M001_014760 PF00994 Probable molybdopterin binding domain M001_014760 PF03453 MoeA N-terminal region (domain I and II) M001_014765 PF00899 ThiF family M001_014775 PF06406 StbA protein M001_014780 PF12697 Alpha/beta hydrolase family M001_014785 PF03459 TOBE domain M001_014785 PF00005 ABC transporter M001_014790 PF00528 Binding-protein-dependent transport system inner membrane component M001_014800 PF02391 MoaE protein M001_014805 PF02597 ThiS family M001_014810 PF01967 MoaC family M001_014815 PF00994 Probable molybdopterin binding domain M001_014820 PF03264 NapC/NirT cytochrome c family, N-terminal region M001_014825 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) M001_014830 PF12837 4Fe-4S binding domain M001_014830 PF12801 4Fe-4S binding domain M001_014835 PF12838 4Fe-4S dicluster domain M001_014835 PF12800 4Fe-4S binding domain M001_014840 PF10518 TAT (twin-arginine translocation) pathway signal sequence M001_014840 PF01568 Molydopterin dinucleotide binding domain M001_014840 PF00384 Molybdopterin oxidoreductase M001_014840 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M001_014850 PF13187 4Fe-4S dicluster domain M001_014850 PF12838 4Fe-4S dicluster domain M001_014855 PF06463 Molybdenum Cofactor Synthesis C M001_014855 PF04055 Radical SAM superfamily M001_014860 PF07730 Histidine kinase M001_014860 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M001_014860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_014860 PF00672 HAMP domain M001_014865 PF00196 Bacterial regulatory proteins, luxR family M001_014865 PF00072 Response regulator receiver domain M001_014875 PF09456 RcsC Alpha-Beta-Loop (ABL) M001_014875 PF00512 His Kinase A (phospho-acceptor) domain M001_014875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_014875 PF00072 Response regulator receiver domain M001_014885 PF01933 Uncharacterised protein family UPF0052 M001_014895 PF13006 Insertion element 4 transposase N-terminal M001_014895 PF01609 Transposase DDE domain M001_014900 PF13230 Glutamine amidotransferases class-II M001_014905 PF13580 SIS domain M001_014910 PF09317 Domain of unknown function (DUF1974) M001_014910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M001_014910 PF02770 Acyl-CoA dehydrogenase, middle domain M001_014910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M001_014915 PF07687 Peptidase dimerisation domain M001_014915 PF01546 Peptidase family M20/M25/M40 M001_014920 PF01609 Transposase DDE domain M001_014920 PF13006 Insertion element 4 transposase N-terminal M001_014930 PF03364 Polyketide cyclase / dehydrase and lipid transport M001_014935 PF01668 SmpB protein M001_014945 PF00512 His Kinase A (phospho-acceptor) domain M001_014945 PF09456 RcsC Alpha-Beta-Loop (ABL) M001_014945 PF00072 Response regulator receiver domain M001_014945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_014950 PF00990 Diguanylate cyclase, GGDEF domain M001_014950 PF00563 EAL domain M001_014950 PF03707 Bacterial signalling protein N terminal repeat M001_014955 PF01568 Molydopterin dinucleotide binding domain M001_014955 PF00384 Molybdopterin oxidoreductase M001_014955 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M001_014955 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M001_014955 PF12838 4Fe-4S dicluster domain M001_014970 PF13181 Tetratricopeptide repeat M001_014970 PF17128 Domain of unknown function (DUF5107) M001_014975 PF00480 ROK family M001_014990 PF00440 Bacterial regulatory proteins, tetR family M001_014995 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M001_014995 PF02770 Acyl-CoA dehydrogenase, middle domain M001_014995 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M001_014995 PF09317 Domain of unknown function (DUF1974) M001_015000 PF00873 AcrB/AcrD/AcrF family M001_015010 PF02075 Crossover junction endodeoxyribonuclease RuvC M001_015015 PF02108 Flagellar assembly protein FliH M001_015020 PF06578 YOP proteins translocation protein K (YscK) M001_015025 PF01514 Secretory protein of YscJ/FliF family M001_015030 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI M001_015035 PF09025 YopR, type III needle-polymerisation regulator M001_015040 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) M001_015045 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF M001_015055 PF16693 Inner membrane component of T3SS, periplasmic domain M001_015055 PF16697 Inner membrane component of T3SS, cytoplasmic domain M001_015060 PF03958 Bacterial type II/III secretion system short domain M001_015060 PF00263 Bacterial type II and III secretion system protein M001_015065 PF05932 Tir chaperone protein (CesT) family M001_015075 PF12833 Helix-turn-helix domain M001_015080 PF09619 Type III secretion system lipoprotein chaperone (YscW) M001_015090 PF05932 Tir chaperone protein (CesT) family M001_015095 PF05844 YopD protein M001_015100 PF04888 Secretion system effector C (SseC) like family M001_015105 PF07720 Tetratricopeptide repeat M001_015110 PF04792 V antigen (LcrV) protein M001_015115 PF07216 LcrG protein M001_015120 PF09621 Type III secretion system regulator (LcrR) M001_015125 PF00771 FHIPEP family M001_015135 PF09474 Type III secretion system YscX (type_III_YscX) M001_015145 PF09059 TyeA M001_015150 PF07201 HrpJ-like domain M001_015155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_015155 PF02874 ATP synthase alpha/beta family, beta-barrel domain M001_015155 PF18269 T3SS EscN ATPase C-terminal domain M001_015165 PF02120 Flagellar hook-length control protein FliK M001_015170 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M001_015175 PF00813 FliP family M001_015180 PF01313 Bacterial export proteins, family 3 M001_015185 PF01311 Bacterial export proteins, family 1 M001_015190 PF01312 FlhB HrpN YscU SpaS Family M001_015195 PF03496 ADP-ribosyltransferase exoenzyme M001_015205 PF00155 Aminotransferase class I and II M001_015210 PF00367 phosphotransferase system, EIIB M001_015210 PF02378 Phosphotransferase system, EIIC M001_015215 PF00356 Bacterial regulatory proteins, lacI family M001_015215 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M001_015225 PF00583 Acetyltransferase (GNAT) family M001_015250 PF00210 Ferritin-like domain M001_015275 PF02378 Phosphotransferase system, EIIC M001_015275 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M001_015275 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_015280 PF07690 Major Facilitator Superfamily M001_015285 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M001_015295 PF00849 RNA pseudouridylate synthase M001_015300 PF00293 NUDIX domain M001_015310 PF04356 Protein of unknown function (DUF489) M001_015315 PF00206 Lyase M001_015315 PF08328 Adenylosuccinate lyase C-terminal M001_015320 PF08007 Cupin superfamily protein M001_015325 PF01609 Transposase DDE domain M001_015325 PF13006 Insertion element 4 transposase N-terminal M001_015345 PF13417 Glutathione S-transferase, N-terminal domain M001_015350 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region M001_015350 PF01243 Pyridoxamine 5'-phosphate oxidase M001_015385 PF01029 NusB family M001_015385 PF01189 16S rRNA methyltransferase RsmB/F M001_015390 PF01042 Endoribonuclease L-PSP M001_015395 PF02901 Pyruvate formate lyase-like M001_015395 PF01228 Glycine radical M001_015400 PF00871 Acetokinase family M001_015405 PF03222 Tryptophan/tyrosine permease family M001_015410 PF00291 Pyridoxal-phosphate dependent enzyme M001_015415 PF00462 Glutaredoxin M001_015420 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M001_015420 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M001_015425 PF04333 MlaA lipoprotein M001_015435 PF03918 Cytochrome C biogenesis protein M001_015440 PF08534 Redoxin M001_015445 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal M001_015445 PF01578 Cytochrome C assembly protein M001_015450 PF03100 CcmE M001_015455 PF04995 Heme exporter protein D (CcmD) M001_015460 PF01578 Cytochrome C assembly protein M001_015465 PF03379 CcmB protein M001_015470 PF00005 ABC transporter M001_015480 PF01584 CheW-like domain M001_015490 PF13614 AAA domain M001_015495 PF13677 Membrane MotB of proton-channel complex MotA/MotB M001_015495 PF00691 OmpA family M001_015500 PF01618 MotA/TolQ/ExbB proton channel family M001_015505 PF01339 CheB methylesterase M001_015505 PF00072 Response regulator receiver domain M001_015510 PF00072 Response regulator receiver domain M001_015510 PF02895 Signal transducing histidine kinase, homodimeric domain M001_015510 PF01584 CheW-like domain M001_015510 PF01627 Hpt domain M001_015510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_015515 PF04344 Chemotaxis phosphatase, CheZ M001_015520 PF00072 Response regulator receiver domain M001_015525 PF04545 Sigma-70, region 4 M001_015525 PF04539 Sigma-70 region 3 M001_015525 PF04542 Sigma-70 region 2 M001_015530 PF10609 NUBPL iron-transfer P-loop NTPase M001_015535 PF00448 SRP54-type protein, GTPase domain M001_015540 PF00771 FHIPEP family M001_015545 PF01312 FlhB HrpN YscU SpaS Family M001_015550 PF01311 Bacterial export proteins, family 1 M001_015555 PF01313 Bacterial export proteins, family 3 M001_015560 PF00813 FliP family M001_015565 PF04347 Flagellar biosynthesis protein, FliO M001_015570 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M001_015575 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M001_015575 PF02154 Flagellar motor switch protein FliM M001_015595 PF18269 T3SS EscN ATPase C-terminal domain M001_015595 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_015605 PF01706 FliG C-terminal domain M001_015605 PF14842 FliG N-terminal domain M001_015605 PF14841 FliG middle domain M001_015610 PF01514 Secretory protein of YscJ/FliF family M001_015610 PF08345 Flagellar M-ring protein C-terminal M001_015615 PF02049 Flagellar hook-basal body complex protein FliE M001_015625 PF07969 Amidohydrolase family M001_015635 PF00224 Pyruvate kinase, barrel domain M001_015635 PF02887 Pyruvate kinase, alpha/beta domain M001_015640 PF01418 Helix-turn-helix domain, rpiR family M001_015640 PF01380 SIS domain M001_015645 PF02685 Glucokinase M001_015670 PF00672 HAMP domain M001_015670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_015675 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_015680 PF00860 Permease family M001_015690 PF05433 Glycine zipper 2TM domain M001_015690 PF16998 17 kDa outer membrane surface antigen M001_015695 PF00390 Malic enzyme, N-terminal domain M001_015695 PF03949 Malic enzyme, NAD binding domain M001_015715 PF13247 4Fe-4S dicluster domain M001_015720 PF12838 4Fe-4S dicluster domain M001_015720 PF01568 Molydopterin dinucleotide binding domain M001_015720 PF12838 4Fe-4S dicluster domain M001_015720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M001_015720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M001_015720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M001_015720 PF00384 Molybdopterin oxidoreductase M001_015720 PF01568 Molydopterin dinucleotide binding domain M001_015720 PF00384 Molybdopterin oxidoreductase M001_015720 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M001_015755 PF02634 FdhD/NarQ family M001_015765 PF00512 His Kinase A (phospho-acceptor) domain M001_015765 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_015765 PF00989 PAS fold M001_015770 PF00072 Response regulator receiver domain M001_015770 PF02954 Bacterial regulatory protein, Fis family M001_015770 PF00158 Sigma-54 interaction domain M001_015775 PF12849 PBP superfamily domain M001_015780 PF00528 Binding-protein-dependent transport system inner membrane component M001_015785 PF00005 ABC transporter M001_015790 PF12804 MobA-like NTP transferase domain M001_015795 PF00994 Probable molybdopterin binding domain M001_015795 PF03454 MoeA C-terminal region (domain IV) M001_015795 PF03453 MoeA N-terminal region (domain I and II) M001_015800 PF04632 Fusaric acid resistance protein family M001_015815 PF13426 PAS domain M001_015815 PF08447 PAS fold M001_015815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_015835 PF05114 Protein of unknown function (DUF692) M001_015845 PF10725 Protein of unknown function (DUF2517) M001_015865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_015865 PF00512 His Kinase A (phospho-acceptor) domain M001_015865 PF09308 LuxQ, periplasmic M001_015865 PF00072 Response regulator receiver domain M001_015870 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_015875 PF00528 Binding-protein-dependent transport system inner membrane component M001_015880 PF12911 N-terminal TM domain of oligopeptide transport permease C M001_015880 PF00528 Binding-protein-dependent transport system inner membrane component M001_015885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_015885 PF00005 ABC transporter M001_015890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M001_015890 PF00005 ABC transporter M001_015900 PF01869 BadF/BadG/BcrA/BcrD ATPase family M001_015905 PF02838 Glycosyl hydrolase family 20, domain 2 M001_015905 PF00728 Glycosyl hydrolase family 20, catalytic domain M001_015910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_015910 PF08447 PAS fold M001_015925 PF08272 Topoisomerase I zinc-ribbon-like M001_015925 PF01131 DNA topoisomerase M001_015925 PF01751 Toprim domain M001_015925 PF01396 Topoisomerase DNA binding C4 zinc finger M001_015930 PF04996 Succinylarginine dihydrolase M001_015960 PF12838 4Fe-4S dicluster domain M001_015970 PF02635 DsrE/DsrF-like family M001_015975 PF00990 Diguanylate cyclase, GGDEF domain M001_015980 PF07690 Major Facilitator Superfamily M001_015985 PF01343 Peptidase family S49 M001_015985 PF08496 Peptidase family S49 N-terminal M001_015990 PF00106 short chain dehydrogenase M001_015995 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_015995 PF03466 LysR substrate binding domain M001_016000 PF07690 Major Facilitator Superfamily M001_016005 PF00155 Aminotransferase class I and II M001_016025 PF01161 Phosphatidylethanolamine-binding protein M001_016035 PF01204 Trehalase M001_016045 PF03167 Uracil DNA glycosylase superfamily M001_016055 PF01228 Glycine radical M001_016060 PF00375 Sodium:dicarboxylate symporter family M001_016065 PF00793 DAHP synthetase I family M001_016070 PF13369 Transglutaminase-like superfamily M001_016080 PF17827 PrmC N-terminal domain M001_016080 PF13847 Methyltransferase domain M001_016085 PF00472 RF-1 domain M001_016085 PF03462 PCRF domain M001_016090 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M001_016090 PF01488 Shikimate / quinate 5-dehydrogenase M001_016090 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M001_016095 PF03550 Outer membrane lipoprotein LolB M001_016100 PF00288 GHMP kinases N terminal domain M001_016100 PF08544 GHMP kinases C terminal M001_016110 PF14572 Phosphoribosyl synthetase-associated domain M001_016110 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M001_016115 PF00149 Calcineurin-like phosphoesterase M001_016115 PF02872 5'-nucleotidase, C-terminal domain M001_016120 PF01195 Peptidyl-tRNA hydrolase M001_016125 PF01926 50S ribosome-binding GTPase M001_016125 PF06071 Protein of unknown function (DUF933) M001_016170 PF02080 TrkA-C domain M001_016170 PF03600 Citrate transporter M001_016175 PF04973 Nicotinamide mononucleotide transporter M001_016180 PF01048 Phosphorylase superfamily M001_016195 PF07859 alpha/beta hydrolase fold M001_016210 PF00012 Hsp70 protein M001_016220 PF00128 Alpha amylase, catalytic domain M001_016220 PF11941 Domain of unknown function (DUF3459) M001_016225 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_016225 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M001_016225 PF10371 Domain of unknown function M001_016225 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M001_016225 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M001_016230 PF07690 Major Facilitator Superfamily M001_016235 PF13419 Haloacid dehalogenase-like hydrolase M001_016250 PF00171 Aldehyde dehydrogenase family M001_016255 PF04958 Arginine N-succinyltransferase beta subunit M001_016260 PF00202 Aminotransferase class-III M001_016265 PF00117 Glutamine amidotransferase class-I M001_016275 PF00579 tRNA synthetases class I (W and Y) M001_016280 PF13419 Haloacid dehalogenase-like hydrolase M001_016285 PF00834 Ribulose-phosphate 3 epimerase family M001_016290 PF02086 D12 class N6 adenine-specific DNA methyltransferase M001_016300 PF01761 3-dehydroquinate synthase M001_016305 PF01202 Shikimate kinase M001_016310 PF11741 AMIN domain M001_016310 PF00263 Bacterial type II and III secretion system protein M001_016310 PF03958 Bacterial type II/III secretion system short domain M001_016310 PF07660 Secretin and TonB N terminus short domain M001_016335 PF00912 Transglycosylase M001_016335 PF00905 Penicillin binding protein transpeptidase domain M001_016335 PF17092 Penicillin-binding protein OB-like domain M001_016340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_016340 PF03466 LysR substrate binding domain M001_016345 PF00672 HAMP domain M001_016345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_016360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_016360 PF03466 LysR substrate binding domain M001_016370 PF01476 LysM domain M001_016370 PF01551 Peptidase family M23 M001_016370 PF08525 Opacity-associated protein A N-terminal motif M001_016380 PF12794 Mechanosensitive ion channel inner membrane domain 1 M001_016380 PF12795 Mechanosensitive ion channel porin domain M001_016380 PF00924 Mechanosensitive ion channel M001_016385 PF03009 Glycerophosphoryl diester phosphodiesterase family M001_016390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_016390 PF02743 Cache domain M001_016390 PF00672 HAMP domain M001_016395 PF02910 Fumarate reductase flavoprotein C-term M001_016395 PF00890 FAD binding domain M001_016400 PF13085 2Fe-2S iron-sulfur cluster binding domain M001_016400 PF13183 4Fe-4S dicluster domain M001_016405 PF02300 Fumarate reductase subunit C M001_016410 PF02313 Fumarate reductase subunit D M001_016415 PF07670 Nucleoside recognition M001_016420 PF07670 Nucleoside recognition M001_016425 PF01546 Peptidase family M20/M25/M40 M001_016425 PF07687 Peptidase dimerisation domain M001_016435 PF06224 Winged helix DNA-binding domain M001_016440 PF17932 Tetracyclin repressor-like, C-terminal domain M001_016440 PF00440 Bacterial regulatory proteins, tetR family M001_016450 PF01266 FAD dependent oxidoreductase M001_016465 PF00501 AMP-binding enzyme M001_016475 PF00106 short chain dehydrogenase M001_016485 PF00072 Response regulator receiver domain M001_016485 PF00486 Transcriptional regulatory protein, C terminal M001_016490 PF00512 His Kinase A (phospho-acceptor) domain M001_016490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_016490 PF08521 Two-component sensor kinase N-terminal M001_016500 PF00478 IMP dehydrogenase / GMP reductase domain M001_016510 PF08207 Elongation factor P (EF-P) KOW-like domain M001_016510 PF09285 Elongation factor P, C-terminal M001_016510 PF01132 Elongation factor P (EF-P) OB domain M001_016520 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_016520 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M001_016535 PF13419 Haloacid dehalogenase-like hydrolase M001_016545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_016545 PF03466 LysR substrate binding domain M001_016550 PF05230 MASE2 domain M001_016550 PF00990 Diguanylate cyclase, GGDEF domain M001_016555 PF00313 'Cold-shock' DNA-binding domain M001_016560 PF00857 Isochorismatase family M001_016565 PF01494 FAD binding domain M001_016570 PF04055 Radical SAM superfamily M001_016570 PF01938 TRAM domain M001_016570 PF00919 Uncharacterized protein family UPF0004 M001_016575 PF02562 PhoH-like protein M001_016580 PF02130 Uncharacterized protein family UPF0054 M001_016585 PF03471 Transporter associated domain M001_016585 PF00571 CBS domain M001_016590 PF00795 Carbon-nitrogen hydrolase M001_016595 PF02508 Rnf-Nqr subunit, membrane protein M001_016605 PF13411 MerR HTH family regulatory protein M001_016610 PF02272 DHHA1 domain M001_016610 PF17768 RecJ OB domain M001_016610 PF01368 DHH family M001_016620 PF01741 Large-conductance mechanosensitive channel, MscL M001_016625 PF00990 Diguanylate cyclase, GGDEF domain M001_016625 PF00072 Response regulator receiver domain M001_016630 PF00589 Phage integrase family M001_016630 PF02899 Phage integrase, N-terminal SAM-like domain M001_016635 PF00258 Flavodoxin M001_016640 PF01523 Putative modulator of DNA gyrase M001_016645 PF01523 Putative modulator of DNA gyrase M001_016650 PF07295 Zinc-ribbon containing domain M001_016655 PF08264 Anticodon-binding domain of tRNA M001_016655 PF00133 tRNA synthetases class I (I, L, M and V) M001_016655 PF13603 Leucyl-tRNA synthetase, Domain 2 M001_016670 PF01467 Cytidylyltransferase-like M001_016680 PF02590 Predicted SPOUT methyltransferase M001_016685 PF03717 Penicillin-binding Protein dimerisation domain M001_016685 PF00905 Penicillin binding protein transpeptidase domain M001_016690 PF01098 Cell cycle protein M001_016695 PF13406 Transglycosylase SLT domain M001_016700 PF05036 Sporulation related domain M001_016700 PF03330 Lytic transglycolase M001_016705 PF07943 Penicillin-binding protein 5, C-terminal domain M001_016705 PF00768 D-alanyl-D-alanine carboxypeptidase M001_016710 PF04359 Protein of unknown function (DUF493) M001_016715 PF03099 Biotin/lipoate A/B protein ligase family M001_016720 PF04055 Radical SAM superfamily M001_016720 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M001_016735 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M001_016735 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M001_016740 PF07023 Protein of unknown function (DUF1315) M001_016745 PF00710 Asparaginase, N-terminal M001_016745 PF17763 Glutaminase/Asparaginase C-terminal domain M001_016750 PF03616 Sodium/glutamate symporter M001_016755 PF00672 HAMP domain M001_016755 PF02743 Cache domain M001_016755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_016765 PF01336 OB-fold nucleic acid binding domain M001_016765 PF00152 tRNA synthetases class II (D, K and N) M001_016770 PF00667 FAD binding domain M001_016770 PF00258 Flavodoxin M001_016770 PF00175 Oxidoreductase NAD-binding domain M001_016775 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M001_016775 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M001_016780 PF01507 Phosphoadenosine phosphosulfate reductase family M001_016785 PF00186 Dihydrofolate reductase M001_016790 PF12821 Threonine/Serine exporter, ThrE M001_016795 PF06738 Putative threonine/serine exporter M001_016805 PF00994 Probable molybdopterin binding domain M001_016815 PF06004 Bacterial protein of unknown function (DUF903) M001_016820 PF00581 Rhodanese-like domain M001_016825 PF04960 Glutaminase M001_016830 PF04320 Protein with unknown function (DUF469) M001_016835 PF02390 Putative methyltransferase M001_016840 PF00155 Aminotransferase class I and II M001_016845 PF00563 EAL domain M001_016845 PF12792 CSS motif domain associated with EAL M001_016850 PF01370 NAD dependent epimerase/dehydratase family M001_016850 PF08338 Domain of unknown function (DUF1731) M001_016860 PF00005 ABC transporter M001_016865 PF13472 GDSL-like Lipase/Acylhydrolase family M001_016870 PF01584 CheW-like domain M001_016870 PF00072 Response regulator receiver domain M001_016875 PF06483 Chitinase C M001_016875 PF00704 Glycosyl hydrolases family 18 M001_016910 PF18416 N-acetylglucosamine binding protein domain 2 M001_016910 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M001_016915 PF12561 ToxR activated gene A lipoprotein domain M001_016915 PF17945 Beta/Gamma crystallin M001_016920 PF08329 Chitinase A, N-terminal domain M001_016920 PF00704 Glycosyl hydrolases family 18 M001_016925 PF08448 PAS fold M001_016925 PF00990 Diguanylate cyclase, GGDEF domain M001_016930 PF08329 Chitinase A, N-terminal domain M001_016930 PF00704 Glycosyl hydrolases family 18 M001_016935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_016935 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M001_016935 PF00072 Response regulator receiver domain M001_016935 PF00672 HAMP domain M001_016935 PF00512 His Kinase A (phospho-acceptor) domain M001_016935 PF01627 Hpt domain M001_016945 PF13443 Cro/C1-type HTH DNA-binding domain M001_016955 PF12832 MFS_1 like family M001_016990 PF04717 Type VI secretion system, phage-baseplate injector M001_016995 PF05638 Type VI secretion system effector, Hcp M001_017005 PF07715 TonB-dependent Receptor Plug Domain M001_017005 PF00593 TonB dependent receptor M001_017025 PF01243 Pyridoxamine 5'-phosphate oxidase M001_017030 PF06228 Haem utilisation ChuX/HutX M001_017040 PF01032 FecCD transport family M001_017045 PF00005 ABC transporter M001_017055 PF03575 Peptidase family S51 M001_017060 PF01894 Uncharacterised protein family UPF0047 M001_017065 PF01168 Alanine racemase, N-terminal domain M001_017065 PF00842 Alanine racemase, C-terminal domain M001_017070 PF03796 DnaB-like helicase C terminal domain M001_017070 PF00772 DnaB-like helicase N terminal domain M001_017080 PF02872 5'-nucleotidase, C-terminal domain M001_017080 PF00149 Calcineurin-like phosphoesterase M001_017100 PF00158 Sigma-54 interaction domain M001_017100 PF02954 Bacterial regulatory protein, Fis family M001_017100 PF00072 Response regulator receiver domain M001_017105 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase M001_017105 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_017115 PF04102 SlyX M001_017120 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M001_017125 PF09526 Probable metal-binding protein (DUF2387) M001_017135 PF00072 Response regulator receiver domain M001_017135 PF01584 CheW-like domain M001_017140 PF00561 alpha/beta hydrolase fold M001_017145 PF00990 Diguanylate cyclase, GGDEF domain M001_017145 PF00563 EAL domain M001_017145 PF00360 Phytochrome region M001_017145 PF01590 GAF domain M001_017150 PF06794 Uncharacterised protein family (UPF0270) M001_017155 PF00485 Phosphoribulokinase / Uridine kinase family M001_017170 PF02566 OsmC-like protein M001_017175 PF13545 Crp-like helix-turn-helix domain M001_017175 PF00027 Cyclic nucleotide-binding domain M001_017180 PF08241 Methyltransferase domain M001_017185 PF00267 Gram-negative porin M001_017195 PF00582 Universal stress protein family M001_017210 PF00294 pfkB family carbohydrate kinase M001_017215 PF04227 Indigoidine synthase A like protein M001_017220 PF00194 Eukaryotic-type carbonic anhydrase M001_017225 PF00561 alpha/beta hydrolase fold M001_017240 PF06877 Regulator of ribonuclease activity B M001_017245 PF00563 EAL domain M001_017245 PF03707 Bacterial signalling protein N terminal repeat M001_017245 PF00990 Diguanylate cyclase, GGDEF domain M001_017260 PF06826 Predicted Permease Membrane Region M001_017260 PF02080 TrkA-C domain M001_017265 PF03006 Haemolysin-III related M001_017270 PF00282 Pyridoxal-dependent decarboxylase conserved domain M001_017275 PF04279 Intracellular septation protein A M001_017280 PF03795 YCII-related domain M001_017285 PF00459 Inositol monophosphatase family M001_017290 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ M001_017295 PF02565 Recombination protein O C terminal M001_017295 PF11967 Recombination protein O N terminal M001_017300 PF01926 50S ribosome-binding GTPase M001_017300 PF07650 KH domain M001_017305 PF00035 Double-stranded RNA binding motif M001_017305 PF14622 Ribonuclease-III-like M001_017310 PF10502 Signal peptidase, peptidase S26 M001_017315 PF03144 Elongation factor Tu domain 2 M001_017315 PF00679 Elongation factor G C-terminus M001_017315 PF00009 Elongation factor Tu GTP binding domain M001_017315 PF06421 GTP-binding protein LepA C-terminus M001_017325 PF17188 MucB/RseB C-terminal domain M001_017325 PF03888 MucB/RseB N-terminal domain M001_017330 PF03872 Anti sigma-E protein RseA, N-terminal domain M001_017330 PF03873 Anti sigma-E protein RseA, C-terminal domain M001_017335 PF08281 Sigma-70, region 4 M001_017335 PF04542 Sigma-70 region 2 M001_017340 PF02910 Fumarate reductase flavoprotein C-term M001_017340 PF00890 FAD binding domain M001_017350 PF03937 Flavinator of succinate dehydrogenase M001_017355 PF01571 Aminomethyltransferase folate-binding domain M001_017360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_017360 PF03466 LysR substrate binding domain M001_017375 PF03091 CutA1 divalent ion tolerance protein M001_017380 PF11412 Disulphide bond corrector protein DsbC M001_017380 PF02683 Cytochrome C biogenesis protein transmembrane region M001_017400 PF01266 FAD dependent oxidoreductase M001_017405 PF01116 Fructose-bisphosphate aldolase class-II M001_017410 PF00162 Phosphoglycerate kinase M001_017415 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M001_017415 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M001_017420 PF00480 ROK family M001_017425 PF01208 Uroporphyrinogen decarboxylase (URO-D) M001_017430 PF09297 NADH pyrophosphatase zinc ribbon domain M001_017430 PF00293 NUDIX domain M001_017435 PF00171 Aldehyde dehydrogenase family M001_017435 PF01619 Proline dehydrogenase M001_017435 PF14850 DNA-binding domain of Proline dehydrogenase M001_017435 PF18327 Proline utilization A proline dehydrogenase N-terminal domain M001_017440 PF08239 Bacterial SH3 domain M001_017445 PF00520 Ion transport protein M001_017445 PF00027 Cyclic nucleotide-binding domain M001_017450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_017450 PF00672 HAMP domain M001_017455 PF08335 GlnD PII-uridylyltransferase M001_017455 PF03710 Glutamate-ammonia ligase adenylyltransferase M001_017480 PF00486 Transcriptional regulatory protein, C terminal M001_017480 PF00072 Response regulator receiver domain M001_017495 PF00293 NUDIX domain M001_017495 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain M001_017495 PF09297 NADH pyrophosphatase zinc ribbon domain M001_017520 PF03060 Nitronate monooxygenase M001_017525 PF00445 Ribonuclease T2 family M001_017535 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase M001_017545 PF00990 Diguanylate cyclase, GGDEF domain M001_017550 PF00270 DEAD/DEAH box helicase M001_017550 PF00271 Helicase conserved C-terminal domain M001_017560 PF00753 Metallo-beta-lactamase superfamily M001_017580 PF01425 Amidase M001_017585 PF04371 Porphyromonas-type peptidyl-arginine deiminase M001_017590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_017590 PF03466 LysR substrate binding domain M001_017595 PF04480 Protein of unknown function (DUF559) M001_017605 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M001_017610 PF04539 Sigma-70 region 3 M001_017610 PF00140 Sigma-70 factor, region 1.2 M001_017610 PF04545 Sigma-70, region 4 M001_017610 PF04542 Sigma-70 region 2 M001_017615 PF01551 Peptidase family M23 M001_017615 PF01476 LysM domain M001_017620 PF09335 SNARE associated Golgi protein M001_017630 PF01975 Survival protein SurE M001_017635 PF01142 tRNA pseudouridine synthase D (TruD) M001_017640 PF02542 YgbB family M001_017645 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase M001_017650 PF04977 Septum formation initiator M001_017655 PF00474 Sodium:solute symporter family M001_017665 PF17969 L,D-transpeptidase C-terminal domain M001_017665 PF03734 L,D-transpeptidase catalytic domain M001_017670 PF00924 Mechanosensitive ion channel M001_017675 PF00871 Acetokinase family M001_017680 PF04074 YhcH/YjgK/YiaL M001_017690 PF01177 Asp/Glu/Hydantoin racemase M001_017695 PF01810 LysE type translocator M001_017705 PF00155 Aminotransferase class I and II M001_017705 PF00392 Bacterial regulatory proteins, gntR family M001_017720 PF00571 CBS domain M001_017720 PF01368 DHH family M001_017720 PF02272 DHHA1 domain M001_017720 PF01743 Poly A polymerase head domain M001_017725 PF12848 ABC transporter M001_017725 PF00005 ABC transporter M001_017735 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ M001_017795 PF00113 Enolase, C-terminal TIM barrel domain M001_017795 PF03952 Enolase, N-terminal domain M001_017800 PF00117 Glutamine amidotransferase class-I M001_017800 PF06418 CTP synthase N-terminus M001_017805 PF03819 MazG nucleotide pyrophosphohydrolase domain M001_017810 PF04607 Region found in RelA / SpoT proteins M001_017810 PF13291 ACT domain M001_017810 PF02824 TGS domain M001_017815 PF01938 TRAM domain M001_017815 PF05958 tRNA (Uracil-5-)-methyltransferase M001_017820 PF00072 Response regulator receiver domain M001_017820 PF01627 Hpt domain M001_017820 PF00512 His Kinase A (phospho-acceptor) domain M001_017820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M001_017820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_017820 PF00672 HAMP domain M001_017825 PF07308 Protein of unknown function (DUF1456) M001_017830 PF01510 N-acetylmuramoyl-L-alanine amidase M001_017835 PF00210 Ferritin-like domain M001_017840 PF03063 Prismane/CO dehydrogenase family M001_017845 PF00042 Globin M001_017845 PF00175 Oxidoreductase NAD-binding domain M001_017845 PF00970 Oxidoreductase FAD-binding domain M001_017850 PF01370 NAD dependent epimerase/dehydratase family M001_017855 PF01569 PAP2 superfamily M001_017860 PF02875 Mur ligase family, glutamate ligase domain M001_017860 PF01225 Mur ligase family, catalytic domain M001_017860 PF08245 Mur ligase middle domain M001_017865 PF02441 Flavoprotein M001_017870 PF00440 Bacterial regulatory proteins, tetR family M001_017875 PF00156 Phosphoribosyl transferase domain M001_017880 PF00005 ABC transporter M001_017885 PF01061 ABC-2 type transporter M001_017920 PF02569 Pantoate-beta-alanine ligase M001_017925 PF02548 Ketopantoate hydroxymethyltransferase M001_017930 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M001_017935 PF01743 Poly A polymerase head domain M001_017935 PF12626 Polymerase A arginine-rich C-terminus M001_017935 PF12627 Probable RNA and SrmB- binding site of polymerase A M001_017940 PF00749 tRNA synthetases class I (E and Q), catalytic domain M001_017945 PF01258 Prokaryotic dksA/traR C4-type zinc finger M001_017950 PF17746 SfsA N-terminal OB domain M001_017950 PF03749 Sugar fermentation stimulation protein RE domain M001_017960 PF04408 Helicase associated domain (HA2) M001_017960 PF00270 DEAD/DEAH box helicase M001_017960 PF08482 ATP-dependent helicase C-terminal M001_017960 PF00271 Helicase conserved C-terminal domain M001_017965 PF00912 Transglycosylase M001_017965 PF14814 Bifunctional transglycosylase second domain M001_017965 PF00905 Penicillin binding protein transpeptidase domain M001_017970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M001_017975 PF00893 Small Multidrug Resistance protein M001_017980 PF00893 Small Multidrug Resistance protein M001_017990 PF11849 Domain of unknown function (DUF3369) M001_017995 PF00719 Inorganic pyrophosphatase M001_018010 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) M001_018025 PF00005 ABC transporter M001_018045 PF08447 PAS fold M001_018045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_018065 PF03600 Citrate transporter M001_018065 PF02080 TrkA-C domain M001_018070 PF00009 Elongation factor Tu GTP binding domain M001_018075 PF01507 Phosphoadenosine phosphosulfate reductase family M001_018080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M001_018080 PF14824 Sirohaem biosynthesis protein central M001_018080 PF10414 Sirohaem synthase dimerisation region M001_018085 PF16200 C-terminal region of band_7 M001_018085 PF01145 SPFH domain / Band 7 family M001_018090 PF01957 NfeD-like C-terminal, partner-binding M001_018095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_018095 PF00672 HAMP domain M001_018100 PF02445 Quinolinate synthetase A protein M001_018105 PF01263 Aldose 1-epimerase M001_018110 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M001_018110 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M001_018115 PF02446 4-alpha-glucanotransferase M001_018120 PF00128 Alpha amylase, catalytic domain M001_018120 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M001_018120 PF02806 Alpha amylase, C-terminal all-beta domain M001_018125 PF00128 Alpha amylase, catalytic domain M001_018125 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) M001_018130 PF01641 SelR domain M001_018140 PF00293 NUDIX domain M001_018140 PF13344 Haloacid dehalogenase-like hydrolase M001_018155 PF01037 Lrp/AsnC ligand binding domain M001_018165 PF07690 Major Facilitator Superfamily M001_018185 PF00209 Sodium:neurotransmitter symporter family M001_018195 PF00209 Sodium:neurotransmitter symporter family M001_018260 PF13174 Tetratricopeptide repeat M001_018260 PF16331 TolA binding protein trimerisation M001_018265 PF00691 OmpA family M001_018270 PF04052 TolB amino-terminal domain M001_018270 PF07676 WD40-like Beta Propeller Repeat M001_018280 PF02472 Biopolymer transport protein ExbD/TolR M001_018285 PF01618 MotA/TolQ/ExbB proton channel family M001_018290 PF03061 Thioesterase superfamily M001_018295 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) M001_018300 PF08173 Membrane bound YbgT-like protein M001_018305 PF02322 Cytochrome bd terminal oxidase subunit II M001_018310 PF01654 Cytochrome bd terminal oxidase subunit I M001_018315 PF05496 Holliday junction DNA helicase RuvB P-loop domain M001_018315 PF05491 RuvB C-terminal winged helix domain M001_018315 PF17864 RuvB AAA lid domain M001_018320 PF01330 RuvA N terminal domain M001_018320 PF07499 RuvA, C-terminal domain M001_018325 PF00672 HAMP domain M001_018325 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_018330 PF01810 LysE type translocator M001_018335 PF00196 Bacterial regulatory proteins, luxR family M001_018335 PF03472 Autoinducer binding domain M001_018340 PF00765 Autoinducer synthase M001_018345 PF03466 LysR substrate binding domain M001_018345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_018350 PF08206 Ribonuclease B OB domain M001_018350 PF17876 Cold shock domain M001_018350 PF00773 RNB domain M001_018355 PF00360 Phytochrome region M001_018355 PF00563 EAL domain M001_018355 PF00990 Diguanylate cyclase, GGDEF domain M001_018355 PF01590 GAF domain M001_018365 PF13419 Haloacid dehalogenase-like hydrolase M001_018370 PF17209 Hfq protein M001_018375 PF04403 Paraquat-inducible protein A M001_018380 PF02470 MlaD protein M001_018390 PF05958 tRNA (Uracil-5-)-methyltransferase M001_018390 PF01938 TRAM domain M001_018395 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M001_018395 PF04073 Aminoacyl-tRNA editing domain M001_018395 PF03129 Anticodon binding domain M001_018400 PF00106 short chain dehydrogenase M001_018415 PF00378 Enoyl-CoA hydratase/isomerase M001_018420 PF10952 Protein of unknown function (DUF2753) M001_018425 PF00132 Bacterial transferase hexapeptide (six repeats) M001_018435 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M001_018445 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_018445 PF08447 PAS fold M001_018450 PF01207 Dihydrouridine synthase (Dus) M001_018455 PF01475 Ferric uptake regulator family M001_018470 PF05525 Branched-chain amino acid transport protein M001_018475 PF05525 Branched-chain amino acid transport protein M001_018480 PF05175 Methyltransferase small domain M001_018485 PF00270 DEAD/DEAH box helicase M001_018485 PF00271 Helicase conserved C-terminal domain M001_018490 PF13673 Acetyltransferase (GNAT) domain M001_018500 PF08032 RNA 2'-O ribose methyltransferase substrate binding M001_018500 PF00588 SpoU rRNA Methylase family M001_018520 PF00773 RNB domain M001_018520 PF08206 Ribonuclease B OB domain M001_018520 PF00575 S1 RNA binding domain M001_018520 PF08461 Ribonuclease R winged-helix domain M001_018520 PF17876 Cold shock domain M001_018525 PF00990 Diguanylate cyclase, GGDEF domain M001_018530 PF01389 OmpA-like transmembrane domain M001_018530 PF00691 OmpA family M001_018535 PF00657 GDSL-like Lipase/Acylhydrolase M001_018540 PF04076 Bacterial OB fold (BOF) protein M001_018545 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M001_018545 PF01464 Transglycosylase SLT domain M001_018550 PF04362 Bacterial Fe(2+) trafficking M001_018555 PF10576 Iron-sulfur binding domain of endonuclease III M001_018555 PF14815 NUDIX domain M001_018555 PF00730 HhH-GPD superfamily base excision DNA repair protein M001_018555 PF00633 Helix-hairpin-helix motif M001_018560 PF01743 Poly A polymerase head domain M001_018560 PF01966 HD domain M001_018560 PF12627 Probable RNA and SrmB- binding site of polymerase A M001_018565 PF02028 BCCT, betaine/carnitine/choline family transporter M001_018580 PF04222 Protein of unknown function (DUF416) M001_018585 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M001_018590 PF01476 LysM domain M001_018590 PF08525 Opacity-associated protein A N-terminal motif M001_018590 PF01551 Peptidase family M23 M001_018610 PF01297 Zinc-uptake complex component A periplasmic M001_018615 PF00005 ABC transporter M001_018620 PF00950 ABC 3 transport family M001_018625 PF03466 LysR substrate binding domain M001_018625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_018630 PF00892 EamA-like transporter family M001_018635 PF03167 Uracil DNA glycosylase superfamily M001_018640 PF00892 EamA-like transporter family M001_018650 PF01541 GIY-YIG catalytic domain M001_018665 PF04012 PspA/IM30 family M001_018670 PF01553 Acyltransferase M001_018690 PF00578 AhpC/TSA family M001_018695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_018695 PF03466 LysR substrate binding domain M001_018710 PF00684 DnaJ central domain M001_018710 PF00226 DnaJ domain M001_018710 PF01556 DnaJ C terminal domain M001_018735 PF00854 POT family M001_018740 PF07690 Major Facilitator Superfamily M001_018745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_018745 PF03466 LysR substrate binding domain M001_018755 PF00521 DNA gyrase/topoisomerase IV, subunit A M001_018755 PF03989 DNA gyrase C-terminal domain, beta-propeller M001_018760 PF01751 Toprim domain M001_018760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_018760 PF00986 DNA gyrase B subunit, carboxyl terminus M001_018760 PF00204 DNA gyrase B M001_018765 PF05728 Uncharacterised protein family (UPF0227) M001_018770 PF00149 Calcineurin-like phosphoesterase M001_018775 PF06853 Protein of unknown function (DUF1249) M001_018780 PF00293 NUDIX domain M001_018785 PF02321 Outer membrane efflux protein M001_018790 PF00294 pfkB family carbohydrate kinase M001_018790 PF01467 Cytidylyltransferase-like M001_018795 PF03279 Bacterial lipid A biosynthesis acyltransferase M001_018800 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M001_018800 PF02378 Phosphotransferase system, EIIC M001_018800 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M001_018805 PF01232 Mannitol dehydrogenase Rossmann domain M001_018805 PF08125 Mannitol dehydrogenase C-terminal domain M001_018810 PF05068 Mannitol repressor M001_018820 PF01556 DnaJ C terminal domain M001_018820 PF00226 DnaJ domain M001_018820 PF00684 DnaJ central domain M001_018835 PF01544 CorA-like Mg2+ transporter protein M001_018840 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M001_018845 PF04307 LexA-binding, inner membrane-associated putative hydrolase M001_018850 PF07670 Nucleoside recognition M001_018850 PF07662 Na+ dependent nucleoside transporter C-terminus M001_018850 PF01773 Na+ dependent nucleoside transporter N-terminus M001_018855 PF00271 Helicase conserved C-terminal domain M001_018855 PF00270 DEAD/DEAH box helicase M001_018855 PF03880 DbpA RNA binding domain M001_018875 PF01040 UbiA prenyltransferase family M001_018880 PF00425 chorismate binding enzyme M001_018885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M001_018885 PF16582 Middle domain of thiamine pyrophosphate M001_018885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_018890 PF12697 Alpha/beta hydrolase family M001_018895 PF00378 Enoyl-CoA hydratase/isomerase M001_018900 PF13378 Enolase C-terminal domain-like M001_018905 PF00501 AMP-binding enzyme M001_018910 PF01752 Collagenase M001_018910 PF08453 Peptidase family M9 N-terminal M001_018915 PF02698 DUF218 domain M001_018920 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M001_018920 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M001_018930 PF01584 CheW-like domain M001_018930 PF00072 Response regulator receiver domain M001_018940 PF05127 Helicase M001_018940 PF13718 GNAT acetyltransferase 2 M001_018940 PF08351 Domain of unknown function (DUF1726) M001_018940 PF17176 tRNA-binding domain M001_018955 PF00210 Ferritin-like domain M001_018960 PF02142 MGS-like domain M001_018965 PF00465 Iron-containing alcohol dehydrogenase M001_018975 PF03577 Peptidase family C69 M001_018980 PF00106 short chain dehydrogenase M001_019000 PF00128 Alpha amylase, catalytic domain M001_019000 PF02903 Alpha amylase, N-terminal ig-like domain M001_019000 PF16657 Maltogenic Amylase, C-terminal domain M001_019020 PF00884 Sulfatase M001_019025 PF01037 Lrp/AsnC ligand binding domain M001_019035 PF04204 Homoserine O-succinyltransferase M001_019045 PF00994 Probable molybdopterin binding domain M001_019045 PF02464 Competence-damaged protein M001_019065 PF04363 Protein of unknown function (DUF496) M001_019100 PF07883 Cupin domain M001_019100 PF01381 Helix-turn-helix M001_019105 PF03594 Benzoate membrane transport protein M001_019115 PF02219 Methylenetetrahydrofolate reductase M001_019130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_019130 PF00672 HAMP domain M001_019135 PF03922 OmpW family M001_019140 PF17158 Membrane-associated sensor, integral membrane domain M001_019140 PF00990 Diguanylate cyclase, GGDEF domain M001_019145 PF17760 UvrA interaction domain M001_019145 PF00005 ABC transporter M001_019145 PF17755 UvrA DNA-binding domain M001_019165 PF03783 Curli production assembly/transport component CsgG M001_019175 PF10627 Curli assembly protein CsgE M001_019180 PF00196 Bacterial regulatory proteins, luxR family M001_019185 PF00436 Single-strand binding protein family M001_019195 PF01545 Cation efflux family M001_019195 PF16916 Dimerisation domain of Zinc Transporter M001_019205 PF00313 'Cold-shock' DNA-binding domain M001_019210 PF00860 Permease family M001_019220 PF02733 Dak1 domain M001_019225 PF02734 DAK2 domain M001_019230 PF00381 PTS HPr component phosphorylation site M001_019230 PF03610 PTS system fructose IIA component M001_019230 PF05524 PEP-utilising enzyme, N-terminal M001_019230 PF00391 PEP-utilising enzyme, mobile domain M001_019235 PF00465 Iron-containing alcohol dehydrogenase M001_019240 PF02954 Bacterial regulatory protein, Fis family M001_019240 PF00158 Sigma-54 interaction domain M001_019240 PF00989 PAS fold M001_019255 PF01594 AI-2E family transporter M001_019260 PF01569 PAP2 superfamily M001_019270 PF01479 S4 domain M001_019275 PF01430 Hsp33 protein M001_019285 PF00392 Bacterial regulatory proteins, gntR family M001_019290 PF01321 Creatinase/Prolidase N-terminal domain M001_019290 PF00557 Metallopeptidase family M24 M001_019295 PF11756 Nitrous oxide-stimulated promoter M001_019300 PF00583 Acetyltransferase (GNAT) family M001_019305 PF05433 Glycine zipper 2TM domain M001_019310 PF00909 Ammonium Transporter Family M001_019315 PF00990 Diguanylate cyclase, GGDEF domain M001_019325 PF06055 Exopolysaccharide synthesis, ExoD M001_019335 PF17151 Periplasmic sensor domain M001_019335 PF00990 Diguanylate cyclase, GGDEF domain M001_019345 PF00132 Bacterial transferase hexapeptide (six repeats) M001_019365 PF06968 Biotin and Thiamin Synthesis associated domain M001_019365 PF04055 Radical SAM superfamily M001_019370 PF05690 Thiazole biosynthesis protein ThiG M001_019380 PF00899 ThiF family M001_019385 PF02581 Thiamine monophosphate synthase M001_019390 PF13667 ThiC-associated domain M001_019390 PF01964 Radical SAM ThiC family M001_019395 PF03738 Glutathionylspermidine synthase preATP-grasp M001_019405 PF03994 Domain of Unknown Function (DUF350) M001_019410 PF01117 Aerolysin toxin M001_019410 PF03440 Aerolysin/Pertussis toxin (APT) domain M001_019425 PF00486 Transcriptional regulatory protein, C terminal M001_019425 PF00072 Response regulator receiver domain M001_019430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_019435 PF08443 RimK-like ATP-grasp domain M001_019435 PF18030 RimK PreATP-grasp domain M001_019440 PF02310 B12 binding domain M001_019440 PF00809 Pterin binding enzyme M001_019440 PF02607 B12 binding domain M001_019440 PF02965 Vitamin B12 dependent methionine synthase, activation domain M001_019440 PF02574 Homocysteine S-methyltransferase M001_019445 PF00999 Sodium/hydrogen exchanger family M001_019470 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) M001_019480 PF07690 Major Facilitator Superfamily M001_019485 PF01914 MarC family integral membrane protein M001_019495 PF01523 Putative modulator of DNA gyrase M001_019500 PF00795 Carbon-nitrogen hydrolase M001_019510 PF13502 AsmA-like C-terminal region M001_019510 PF13116 Protein of unknown function M001_019515 PF10150 Ribonuclease E/G family M001_019515 PF00575 S1 RNA binding domain M001_019520 PF02545 Maf-like protein M001_019525 PF04093 rod shape-determining protein MreD M001_019530 PF04085 rod shape-determining protein MreC M001_019560 PF14245 Type IV pilin PilA M001_019560 PF07963 Prokaryotic N-terminal methylation motif M001_019565 PF07963 Prokaryotic N-terminal methylation motif M001_019565 PF00114 Pilin (bacterial filament) M001_019580 PF00482 Type II secretion system (T2SS), protein F M001_019585 PF00437 Type II/IV secretion system protein M001_019585 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M001_019600 PF03958 Bacterial type II/III secretion system short domain M001_019600 PF00263 Bacterial type II and III secretion system protein M001_019630 PF00990 Diguanylate cyclase, GGDEF domain M001_019630 PF17157 Gammaproteobacterial periplasmic sensor domain M001_019630 PF00563 EAL domain M001_019635 PF12792 CSS motif domain associated with EAL M001_019635 PF00563 EAL domain M001_019640 PF01699 Sodium/calcium exchanger protein M001_019645 PF00221 Aromatic amino acid lyase M001_019650 PF17391 Urocanase N-terminal domain M001_019650 PF17392 Urocanase C-terminal domain M001_019650 PF01175 Urocanase Rossmann-like domain M001_019655 PF00491 Arginase family M001_019660 PF01979 Amidohydrolase family M001_019665 PF00392 Bacterial regulatory proteins, gntR family M001_019665 PF07702 UTRA domain M001_019670 PF00484 Carbonic anhydrase M001_019675 PF04542 Sigma-70 region 2 M001_019675 PF04545 Sigma-70, region 4 M001_019675 PF00140 Sigma-70 factor, region 1.2 M001_019680 PF18075 FtsX extracellular domain M001_019685 PF00005 ABC transporter M001_019690 PF00448 SRP54-type protein, GTPase domain M001_019690 PF02881 SRP54-type protein, helical bundle domain M001_019715 PF00999 Sodium/hydrogen exchanger family M001_019715 PF02254 TrkA-N domain M001_019720 PF02525 Flavodoxin-like fold M001_019725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_019725 PF03466 LysR substrate binding domain M001_019730 PF00106 short chain dehydrogenase M001_019745 PF00326 Prolyl oligopeptidase family M001_019745 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain M001_019760 PF13091 PLD-like domain M001_019770 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_019770 PF01464 Transglycosylase SLT domain M001_019780 PF02416 mttA/Hcf106 family M001_019785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_019785 PF03466 LysR substrate binding domain M001_019790 PF01914 MarC family integral membrane protein M001_019795 PF10678 Protein of unknown function (DUF2492) M001_019800 PF00375 Sodium:dicarboxylate symporter family M001_019810 PF03466 LysR substrate binding domain M001_019810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_019815 PF13533 Biotin-lipoyl like M001_019820 PF07690 Major Facilitator Superfamily M001_019825 PF07947 YhhN family M001_019840 PF00440 Bacterial regulatory proteins, tetR family M001_019890 PF00009 Elongation factor Tu GTP binding domain M001_019890 PF03144 Elongation factor Tu domain 2 M001_019890 PF03143 Elongation factor Tu C-terminal domain M001_019895 PF00679 Elongation factor G C-terminus M001_019895 PF14492 Elongation Factor G, domain II M001_019895 PF00009 Elongation factor Tu GTP binding domain M001_019895 PF03144 Elongation factor Tu domain 2 M001_019895 PF03764 Elongation factor G, domain IV M001_019900 PF00177 Ribosomal protein S7p/S5e M001_019905 PF00164 Ribosomal protein S12/S23 M001_019910 PF04077 DsrH like protein M001_019915 PF02635 DsrE/DsrF-like family M001_019920 PF02635 DsrE/DsrF-like family M001_019925 PF01042 Endoribonuclease L-PSP M001_019930 PF13309 HTH domain M001_019930 PF08348 YheO-like PAS domain M001_019935 PF05000 RNA polymerase Rpb1, domain 4 M001_019935 PF04998 RNA polymerase Rpb1, domain 5 M001_019935 PF04983 RNA polymerase Rpb1, domain 3 M001_019935 PF00623 RNA polymerase Rpb1, domain 2 M001_019935 PF04997 RNA polymerase Rpb1, domain 1 M001_019940 PF04560 RNA polymerase Rpb2, domain 7 M001_019940 PF00562 RNA polymerase Rpb2, domain 6 M001_019940 PF04561 RNA polymerase Rpb2, domain 2 M001_019940 PF04563 RNA polymerase beta subunit M001_019940 PF04565 RNA polymerase Rpb2, domain 3 M001_019940 PF10385 RNA polymerase beta subunit external 1 domain M001_019945 PF00542 Ribosomal protein L7/L12 C-terminal domain M001_019945 PF16320 Ribosomal protein L7/L12 dimerisation domain M001_019950 PF00466 Ribosomal protein L10 M001_019955 PF00687 Ribosomal protein L1p/L10e family M001_019960 PF00298 Ribosomal protein L11, RNA binding domain M001_019960 PF03946 Ribosomal protein L11, N-terminal domain M001_019965 PF02357 Transcription termination factor nusG M001_019965 PF00467 KOW motif M001_019970 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M001_019980 PF00009 Elongation factor Tu GTP binding domain M001_019980 PF03143 Elongation factor Tu C-terminal domain M001_019980 PF03144 Elongation factor Tu domain 2 M001_019995 PF00485 Phosphoribulokinase / Uridine kinase family M001_020000 PF08279 HTH domain M001_020000 PF02237 Biotin protein ligase C terminal domain M001_020000 PF03099 Biotin/lipoate A/B protein ligase family M001_020005 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M001_020005 PF01565 FAD binding domain M001_020010 PF02080 TrkA-C domain M001_020010 PF02254 TrkA-N domain M001_020015 PF02386 Cation transport protein M001_020035 PF01751 Toprim domain M001_020035 PF01131 DNA topoisomerase M001_020045 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_020045 PF00512 His Kinase A (phospho-acceptor) domain M001_020045 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_020050 PF03264 NapC/NirT cytochrome c family, N-terminal region M001_020055 PF01568 Molydopterin dinucleotide binding domain M001_020055 PF18364 Molybdopterin oxidoreductase N-terminal domain M001_020055 PF00384 Molybdopterin oxidoreductase M001_020065 PF08918 PhoQ Sensor M001_020065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_020070 PF00072 Response regulator receiver domain M001_020070 PF00486 Transcriptional regulatory protein, C terminal M001_020085 PF01794 Ferric reductase like transmembrane component M001_020090 PF00174 Oxidoreductase molybdopterin binding domain M001_020095 PF06496 Protein of unknown function (DUF1097) M001_020100 PF00072 Response regulator receiver domain M001_020100 PF00158 Sigma-54 interaction domain M001_020110 PF00512 His Kinase A (phospho-acceptor) domain M001_020110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_020130 PF00478 IMP dehydrogenase / GMP reductase domain M001_020130 PF00571 CBS domain M001_020135 PF10063 Uncharacterized integral membrane protein (DUF2301) M001_020145 PF01037 Lrp/AsnC ligand binding domain M001_020150 PF03590 Aspartate-ammonia ligase M001_020155 PF17871 AAA lid domain M001_020155 PF00004 ATPase family associated with various cellular activities (AAA) M001_020155 PF07724 AAA domain (Cdc48 subfamily) M001_020155 PF02861 Clp amino terminal domain, pathogenicity island component M001_020155 PF10431 C-terminal, D2-small domain, of ClpB protein M001_020165 PF00849 RNA pseudouridylate synthase M001_020165 PF01479 S4 domain M001_020170 PF13525 Outer membrane lipoprotein M001_020175 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M001_020175 PF07992 Pyridine nucleotide-disulphide oxidoreductase M001_020180 PF00375 Sodium:dicarboxylate symporter family M001_020185 PF03313 Serine dehydratase alpha chain M001_020190 PF13309 HTH domain M001_020190 PF08348 YheO-like PAS domain M001_020200 PF02233 NAD(P) transhydrogenase beta subunit M001_020205 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch M001_020205 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M001_020205 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M001_020210 PF00465 Iron-containing alcohol dehydrogenase M001_020215 PF06719 AraC-type transcriptional regulator N-terminus M001_020215 PF12833 Helix-turn-helix domain M001_020220 PF08212 Lipocalin-like domain M001_020225 PF02743 Cache domain M001_020225 PF00672 HAMP domain M001_020225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_020235 PF03466 LysR substrate binding domain M001_020235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_020255 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M001_020255 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M001_020260 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain M001_020260 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain M001_020265 PF01316 Arginine repressor, DNA binding domain M001_020265 PF02863 Arginine repressor, C-terminal domain M001_020270 PF03606 C4-dicarboxylate anaerobic carrier M001_020275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M001_020275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M001_020280 PF00696 Amino acid kinase family M001_020305 PF06969 HemN C-terminal domain M001_020305 PF04055 Radical SAM superfamily M001_020310 PF10675 Protein of unknown function (DUF2489) M001_020315 PF04220 Der GTPase activator (YihI) M001_020320 PF00034 Cytochrome c M001_020325 PF01926 50S ribosome-binding GTPase M001_020335 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M001_020335 PF08501 Shikimate dehydrogenase substrate binding domain M001_020335 PF01488 Shikimate / quinate 5-dehydrogenase M001_020340 PF01218 Coproporphyrinogen III oxidase M001_020345 PF01300 Telomere recombination M001_020350 PF00731 AIR carboxylase M001_020355 PF01396 Topoisomerase DNA binding C4 zinc finger M001_020360 PF04361 Protein of unknown function (DUF494) M001_020365 PF17782 DprA winged helix domain M001_020365 PF02481 DNA recombination-mediator protein A M001_020370 PF01476 LysM domain M001_020375 PF01327 Polypeptide deformylase M001_020380 PF02911 Formyl transferase, C-terminal domain M001_020380 PF00551 Formyl transferase M001_020385 PF01029 NusB family M001_020385 PF01189 16S rRNA methyltransferase RsmB/F M001_020390 PF02080 TrkA-C domain M001_020390 PF02254 TrkA-N domain M001_020395 PF02386 Cation transport protein M001_020405 PF00120 Glutamine synthetase, catalytic domain M001_020405 PF03951 Glutamine synthetase, beta-Grasp domain M001_020415 PF00512 His Kinase A (phospho-acceptor) domain M001_020415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_020415 PF00989 PAS fold M001_020420 PF00158 Sigma-54 interaction domain M001_020420 PF00072 Response regulator receiver domain M001_020420 PF02954 Bacterial regulatory protein, Fis family M001_020425 PF00962 Adenosine/AMP deaminase M001_020430 PF02646 RmuC family M001_020445 PF02082 Transcriptional regulator M001_020450 PF00294 pfkB family carbohydrate kinase M001_020455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_020455 PF03466 LysR substrate binding domain M001_020460 PF02540 NAD synthase M001_020460 PF00958 GMP synthase C terminal domain M001_020460 PF00117 Glutamine amidotransferase class-I M001_020465 PF00171 Aldehyde dehydrogenase family M001_020470 PF00202 Aminotransferase class-III M001_020475 PF07883 Cupin domain M001_020475 PF01381 Helix-turn-helix M001_020480 PF00171 Aldehyde dehydrogenase family M001_020490 PF00892 EamA-like transporter family M001_020495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_020500 PF04143 Sulphur transport M001_020505 PF01389 OmpA-like transmembrane domain M001_020505 PF00691 OmpA family M001_020510 PF00291 Pyridoxal-phosphate dependent enzyme M001_020510 PF00585 C-terminal regulatory domain of Threonine dehydratase M001_020515 PF00920 Dehydratase family M001_020520 PF01063 Amino-transferase class IV M001_020530 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M001_020530 PF00205 Thiamine pyrophosphate enzyme, central domain M001_020530 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M001_020535 PF13335 Magnesium chelatase, subunit ChlI C-terminal M001_020535 PF01078 Magnesium chelatase, subunit ChlI M001_020540 PF01553 Acyltransferase M001_020545 PF01553 Acyltransferase M001_020550 PF04463 Protein of unknown function (DUF523) M001_020560 PF00857 Isochorismatase family M001_020565 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M001_020565 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M001_020570 PF01323 DSBA-like thioredoxin domain M001_020575 PF01636 Phosphotransferase enzyme family M001_020580 PF13746 4Fe-4S dicluster domain M001_020580 PF12801 4Fe-4S binding domain M001_020580 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase M001_020585 PF06288 Protein of unknown function (DUF1040) M001_020590 PF00563 EAL domain M001_020590 PF01590 GAF domain M001_020590 PF00990 Diguanylate cyclase, GGDEF domain M001_020590 PF00360 Phytochrome region M001_020595 PF13411 MerR HTH family regulatory protein M001_020600 PF00403 Heavy-metal-associated domain M001_020605 PF00156 Phosphoribosyl transferase domain M001_020610 PF01138 3' exoribonuclease family, domain 1 M001_020610 PF03725 3' exoribonuclease family, domain 2 M001_020615 PF03755 YicC-like family, N-terminal region M001_020615 PF08340 Domain of unknown function (DUF1732) M001_020655 PF01420 Type I restriction modification DNA specificity domain M001_020660 PF02384 N-6 DNA Methylase M001_020660 PF12161 HsdM N-terminal domain M001_020665 PF08463 EcoEI R protein C-terminal M001_020665 PF04851 Type III restriction enzyme, res subunit M001_020665 PF00271 Helicase conserved C-terminal domain M001_020665 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) M001_020685 PF00072 Response regulator receiver domain M001_020685 PF00196 Bacterial regulatory proteins, luxR family M001_020690 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M001_020690 PF01627 Hpt domain M001_020690 PF00672 HAMP domain M001_020690 PF00072 Response regulator receiver domain M001_020690 PF00512 His Kinase A (phospho-acceptor) domain M001_020690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_020695 PF01464 Transglycosylase SLT domain M001_020695 PF10145 Phage-related minor tail protein M001_020695 PF01551 Peptidase family M23 M001_020700 PF01312 FlhB HrpN YscU SpaS Family M001_020705 PF01311 Bacterial export proteins, family 1 M001_020715 PF00813 FliP family M001_020740 PF00771 FHIPEP family M001_020745 PF18269 T3SS EscN ATPase C-terminal domain M001_020745 PF02874 ATP synthase alpha/beta family, beta-barrel domain M001_020745 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_020785 PF04888 Secretion system effector C (SseC) like family M001_020830 PF00263 Bacterial type II and III secretion system protein M001_020830 PF03958 Bacterial type II/III secretion system short domain M001_020845 PF12833 Helix-turn-helix domain M001_020845 PF01965 DJ-1/PfpI family M001_020865 PF01514 Secretory protein of YscJ/FliF family M001_020880 PF07201 HrpJ-like domain M001_020885 PF03466 LysR substrate binding domain M001_020885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_020890 PF00107 Zinc-binding dehydrogenase M001_020890 PF08240 Alcohol dehydrogenase GroES-like domain M001_020895 PF00756 Putative esterase M001_020905 PF03781 Sulfatase-modifying factor enzyme 1 M001_020905 PF12867 DinB superfamily M001_020910 PF13593 SBF-like CPA transporter family (DUF4137) M001_020915 PF13520 Amino acid permease M001_020920 PF01588 Putative tRNA binding domain M001_020925 PF13520 Amino acid permease M001_020930 PF04074 YhcH/YjgK/YiaL M001_020935 PF02837 Glycosyl hydrolases family 2, sugar binding domain M001_020935 PF00703 Glycosyl hydrolases family 2 M001_020935 PF16353 Domain of unknown function(DUF4981) M001_020935 PF02836 Glycosyl hydrolases family 2, TIM barrel domain M001_020935 PF02929 Beta galactosidase small chain M001_020940 PF00356 Bacterial regulatory proteins, lacI family M001_020975 PF00132 Bacterial transferase hexapeptide (six repeats) M001_020980 PF01612 3'-5' exonuclease M001_020980 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M001_020980 PF00476 DNA polymerase family A M001_020980 PF01367 5'-3' exonuclease, C-terminal SAM fold M001_020990 PF06005 Cell division protein ZapB M001_021000 PF00132 Bacterial transferase hexapeptide (six repeats) M001_021000 PF06426 Serine acetyltransferase, N-terminal M001_021005 PF01545 Cation efflux family M001_021005 PF16916 Dimerisation domain of Zinc Transporter M001_021010 PF00486 Transcriptional regulatory protein, C terminal M001_021010 PF00072 Response regulator receiver domain M001_021015 PF16527 Two-component sensor protein CpxA, periplasmic domain M001_021015 PF00512 His Kinase A (phospho-acceptor) domain M001_021015 PF00672 HAMP domain M001_021015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_021020 PF00588 SpoU rRNA Methylase family M001_021025 PF01554 MatE M001_021030 PF02630 SCO1/SenC M001_021040 PF00717 Peptidase S24-like M001_021040 PF01726 LexA DNA binding domain M001_021045 PF01553 Acyltransferase M001_021050 PF01040 UbiA prenyltransferase family M001_021055 PF04345 Chorismate lyase M001_021075 PF08240 Alcohol dehydrogenase GroES-like domain M001_021075 PF00107 Zinc-binding dehydrogenase M001_021080 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) M001_021085 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M001_021090 PF00535 Glycosyl transferase family 2 M001_021095 PF01075 Glycosyltransferase family 9 (heptosyltransferase) M001_021100 PF01467 Cytidylyltransferase-like M001_021105 PF04393 Protein of unknown function (DUF535) M001_021110 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M001_021110 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M001_021110 PF06827 Zinc finger found in FPG and IleRS M001_021120 PF00471 Ribosomal protein L33 M001_021125 PF00830 Ribosomal L28 family M001_021130 PF04002 RadC-like JAB domain M001_021135 PF02441 Flavoprotein M001_021135 PF04127 DNA / pantothenate metabolism flavoprotein M001_021140 PF00692 dUTPase M001_021145 PF00440 Bacterial regulatory proteins, tetR family M001_021150 PF05552 Conserved TM helix M001_021150 PF00924 Mechanosensitive ion channel M001_021155 PF00342 Phosphoglucose isomerase M001_021160 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M001_021160 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M001_021165 PF03466 LysR substrate binding domain M001_021165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M001_021180 PF13380 CoA binding domain M001_021180 PF00583 Acetyltransferase (GNAT) family M001_021180 PF13607 Succinyl-CoA ligase like flavodoxin domain M001_021210 PF12724 Flavodoxin domain M001_021215 PF02386 Cation transport protein M001_021220 PF09186 Domain of unknown function (DUF1949) M001_021220 PF01205 Uncharacterized protein family UPF0029 M001_021225 PF00557 Metallopeptidase family M24 M001_021230 PF00501 AMP-binding enzyme M001_021230 PF13193 AMP-binding enzyme C-terminal domain M001_021235 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M001_021235 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M001_021235 PF00378 Enoyl-CoA hydratase/isomerase M001_021240 PF00108 Thiolase, N-terminal domain M001_021240 PF02803 Thiolase, C-terminal domain M001_021245 PF00486 Transcriptional regulatory protein, C terminal M001_021245 PF00072 Response regulator receiver domain M001_021250 PF00512 His Kinase A (phospho-acceptor) domain M001_021250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_021250 PF00672 HAMP domain M001_021255 PF01547 Bacterial extracellular solute-binding protein M001_021265 PF01206 Sulfurtransferase TusA M001_021270 PF01042 Endoribonuclease L-PSP M001_021275 PF13488 Glycine zipper M001_021275 PF00691 OmpA family M001_021280 PF03352 Methyladenine glycosylase M001_021285 PF02091 Glycyl-tRNA synthetase alpha subunit M001_021290 PF05746 DALR anticodon binding domain M001_021290 PF02092 Glycyl-tRNA synthetase beta subunit M001_021305 PF00990 Diguanylate cyclase, GGDEF domain M001_021305 PF03707 Bacterial signalling protein N terminal repeat M001_021305 PF00563 EAL domain M001_021310 PF03545 Yersinia virulence determinant (YopE) M001_021310 PF03496 ADP-ribosyltransferase exoenzyme M001_021315 PF03545 Yersinia virulence determinant (YopE) M001_021315 PF03496 ADP-ribosyltransferase exoenzyme M001_021320 PF05932 Tir chaperone protein (CesT) family M001_021330 PF00672 HAMP domain M001_021330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M001_021335 PF00356 Bacterial regulatory proteins, lacI family M001_021340 PF13458 Periplasmic binding protein M001_021345 PF02653 Branched-chain amino acid transport system / permease component M001_021350 PF11862 Domain of unknown function (DUF3382) M001_021350 PF02653 Branched-chain amino acid transport system / permease component M001_021355 PF00005 ABC transporter M001_021355 PF12399 Branched-chain amino acid ATP-binding cassette transporter M001_021360 PF00005 ABC transporter M001_021365 PF00581 Rhodanese-like domain M001_021370 PF01694 Rhomboid family M001_021370 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease M001_021375 PF12262 Bacterial virulence factor lipase N-terminal M001_021380 PF04380 Membrane fusogenic activity M001_021385 PF00563 EAL domain M001_021385 PF08447 PAS fold M001_021385 PF00990 Diguanylate cyclase, GGDEF domain M001_021385 PF08448 PAS fold M001_021390 PF00175 Oxidoreductase NAD-binding domain M001_021395 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M001_021405 PF07497 Rho termination factor, RNA-binding domain M001_021405 PF07498 Rho termination factor, N-terminal domain M001_021405 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_021410 PF00085 Thioredoxin M001_021415 PF00270 DEAD/DEAH box helicase M001_021415 PF00271 Helicase conserved C-terminal domain M001_021420 PF02541 Ppx/GppA phosphatase family M001_021430 PF04445 Putative SAM-dependent methyltransferase M001_021435 PF00563 EAL domain M001_021435 PF00990 Diguanylate cyclase, GGDEF domain M001_021435 PF03707 Bacterial signalling protein N terminal repeat M001_021440 PF01432 Peptidase family M3 M001_021445 PF00704 Glycosyl hydrolases family 18 M001_021450 PF18416 N-acetylglucosamine binding protein domain 2 M001_021450 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading M001_021455 PF00490 Delta-aminolevulinic acid dehydratase M001_021460 PF01026 TatD related DNase M001_021465 PF00902 Sec-independent protein translocase protein (TatC) M001_021470 PF02416 mttA/Hcf106 family M001_021475 PF02416 mttA/Hcf106 family M001_021480 PF03109 ABC1 family M001_021485 PF02036 SCP-2 sterol transfer family M001_021490 PF01209 ubiE/COQ5 methyltransferase family M001_021495 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M001_021500 PF07969 Amidohydrolase family M001_021505 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M001_021540 PF03544 Gram-negative bacterial TonB protein C-terminal M001_021545 PF02472 Biopolymer transport protein ExbD/TolR M001_021550 PF01618 MotA/TolQ/ExbB proton channel family M001_021555 PF01618 MotA/TolQ/ExbB proton channel family M001_021565 PF00196 Bacterial regulatory proteins, luxR family M001_021565 PF03472 Autoinducer binding domain M001_021570 PF01380 SIS domain M001_021575 PF08220 DeoR-like helix-turn-helix domain M001_021575 PF00455 DeoR C terminal sensor domain M001_021580 PF00072 Response regulator receiver domain M001_021580 PF00486 Transcriptional regulatory protein, C terminal M001_021585 PF00672 HAMP domain M001_021585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M001_021585 PF00512 His Kinase A (phospho-acceptor) domain M001_021590 PF00905 Penicillin binding protein transpeptidase domain M001_021600 PF06123 Inner membrane protein CreD M001_021605 PF00132 Bacterial transferase hexapeptide (six repeats) M001_021605 PF14602 Hexapeptide repeat of succinyl-transferase M001_021605 PF12804 MobA-like NTP transferase domain M001_021610 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M001_021610 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M001_021615 PF02874 ATP synthase alpha/beta family, beta-barrel domain M001_021615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_021620 PF00231 ATP synthase M001_021625 PF00306 ATP synthase alpha/beta chain, C terminal domain M001_021625 PF02874 ATP synthase alpha/beta family, beta-barrel domain M001_021625 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M001_021630 PF00213 ATP synthase delta (OSCP) subunit M001_021635 PF00430 ATP synthase B/B' CF(0) M001_021640 PF00137 ATP synthase subunit C M001_021645 PF00119 ATP synthase A chain M001_021655 PF02195 ParB-like nuclease domain M001_021655 PF17762 HTH domain found in ParB protein M001_021660 PF13614 AAA domain M001_021665 PF02527 rRNA small subunit methyltransferase G M001_021670 PF01134 Glucose inhibited division protein A M001_021670 PF13932 GidA associated domain M001_021675 PF00258 Flavodoxin M001_021680 PF07715 TonB-dependent Receptor Plug Domain M001_021680 PF00593 TonB dependent receptor M001_021685 PF00005 ABC transporter M001_021690 PF00005 ABC transporter M001_021695 PF01497 Periplasmic binding protein M001_021700 PF01032 FecCD transport family M001_021705 PF01926 50S ribosome-binding GTPase M001_021705 PF12631 MnmE helical domain M001_021705 PF10396 GTP-binding protein TrmE N-terminus M001_021710 PF02096 60Kd inner membrane protein M001_021710 PF14849 YidC periplasmic domain M001_021715 PF01809 Putative membrane protein insertion efficiency factor M001_021720 PF00825 Ribonuclease P M001_021725 PF00468 Ribosomal protein L34 M001_021735 PF00528 Binding-protein-dependent transport system inner membrane component M001_021740 PF00497 Bacterial extracellular solute-binding proteins, family 3 M001_021790 PF00176 SNF2 family N-terminal domain M001_021790 PF04434 SWIM zinc finger M001_021790 PF00271 Helicase conserved C-terminal domain M001_021875 PF00574 Clp protease M001_021980 PF18090 Centromere-binding protein HTH domain M001_021980 PF02195 ParB-like nuclease domain M001_021990 PF13614 AAA domain M001_022025 PF17854 FtsK alpha domain M001_022025 PF13491 4TM region of DNA translocase FtsK/SpoIIIE M001_022025 PF01580 FtsK/SpoIIIE family M001_022025 PF09397 Ftsk gamma domain