locus-tag class description AMS64_00010 PF13411 MerR HTH family regulatory protein AMS64_00015 PF00403 Heavy-metal-associated domain AMS64_00020 PF00156 Phosphoribosyl transferase domain AMS64_00025 PF01138 3' exoribonuclease family, domain 1 AMS64_00025 PF03725 3' exoribonuclease family, domain 2 AMS64_00030 PF08340 Domain of unknown function (DUF1732) AMS64_00030 PF03755 YicC-like family, N-terminal region AMS64_00035 PF03466 LysR substrate binding domain AMS64_00035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_00040 PF00107 Zinc-binding dehydrogenase AMS64_00040 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_00045 PF00756 Putative esterase AMS64_00055 PF12867 DinB superfamily AMS64_00055 PF03781 Sulfatase-modifying factor enzyme 1 AMS64_00060 PF13593 SBF-like CPA transporter family (DUF4137) AMS64_00065 PF13520 Amino acid permease AMS64_00070 PF01588 Putative tRNA binding domain AMS64_00075 PF13520 Amino acid permease AMS64_00080 PF04074 YhcH/YjgK/YiaL AMS64_00085 PF16353 Domain of unknown function(DUF4981) AMS64_00085 PF00703 Glycosyl hydrolases family 2 AMS64_00085 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMS64_00085 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMS64_00085 PF02929 Beta galactosidase small chain AMS64_00090 PF00356 Bacterial regulatory proteins, lacI family AMS64_00140 PF01177 Asp/Glu/Hydantoin racemase AMS64_00145 PF07715 TonB-dependent Receptor Plug Domain AMS64_00145 PF00593 TonB dependent receptor AMS64_00150 PF03466 LysR substrate binding domain AMS64_00150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_00165 PF00731 AIR carboxylase AMS64_00170 PF02222 ATP-grasp domain AMS64_00170 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AMS64_00175 PF07690 Major Facilitator Superfamily AMS64_00180 PF00072 Response regulator receiver domain AMS64_00180 PF04397 LytTr DNA-binding domain AMS64_00185 PF06580 Histidine kinase AMS64_00185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00185 PF07694 5TMR of 5TMR-LYT AMS64_00195 PF00210 Ferritin-like domain AMS64_00200 PF07055 Enoyl reductase FAD binding domain AMS64_00200 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMS64_00200 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMS64_00205 PF00582 Universal stress protein family AMS64_00210 PF00579 tRNA synthetases class I (W and Y) AMS64_00215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_00215 PF03466 LysR substrate binding domain AMS64_00230 PF00892 EamA-like transporter family AMS64_00245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS64_00255 PF00625 Guanylate kinase AMS64_00260 PF01192 RNA polymerase Rpb6 AMS64_00265 PF13291 ACT domain AMS64_00265 PF02824 TGS domain AMS64_00265 PF04607 Region found in RelA / SpoT proteins AMS64_00270 PF00588 SpoU rRNA Methylase family AMS64_00270 PF12105 SpoU, rRNA methylase, C-terminal AMS64_00275 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_00280 PF12146 Serine aminopeptidase, S33 AMS64_00315 PF00440 Bacterial regulatory proteins, tetR family AMS64_00320 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_00325 PF00873 AcrB/AcrD/AcrF family AMS64_00330 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_00330 PF00512 His Kinase A (phospho-acceptor) domain AMS64_00330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00335 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_00335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS64_00340 PF03814 Potassium-transporting ATPase A subunit AMS64_00350 PF02669 K+-transporting ATPase, c chain AMS64_00355 PF00512 His Kinase A (phospho-acceptor) domain AMS64_00355 PF13493 Domain of unknown function (DUF4118) AMS64_00355 PF13492 GAF domain AMS64_00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00355 PF02702 Osmosensitive K+ channel His kinase sensor domain AMS64_00360 PF00072 Response regulator receiver domain AMS64_00360 PF00486 Transcriptional regulatory protein, C terminal AMS64_00365 PF07690 Major Facilitator Superfamily AMS64_00375 PF00155 Aminotransferase class I and II AMS64_00380 PF00011 Hsp20/alpha crystallin family AMS64_00385 PF00011 Hsp20/alpha crystallin family AMS64_00390 PF12706 Beta-lactamase superfamily domain AMS64_00395 PF12833 Helix-turn-helix domain AMS64_00395 PF01965 DJ-1/PfpI family AMS64_00400 PF13280 WYL domain AMS64_00400 PF08279 HTH domain AMS64_00405 PF00561 alpha/beta hydrolase fold AMS64_00415 PF00204 DNA gyrase B AMS64_00415 PF18053 DNA gyrase B subunit insert domain AMS64_00415 PF00986 DNA gyrase B subunit, carboxyl terminus AMS64_00415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00415 PF01751 Toprim domain AMS64_00420 PF02463 RecF/RecN/SMC N terminal domain AMS64_00425 PF00712 DNA polymerase III beta subunit, N-terminal domain AMS64_00425 PF02767 DNA polymerase III beta subunit, central domain AMS64_00425 PF02768 DNA polymerase III beta subunit, C-terminal domain AMS64_00430 PF00308 Bacterial dnaA protein AMS64_00430 PF11638 DnaA N-terminal domain AMS64_00430 PF08299 Bacterial dnaA protein helix-turn-helix AMS64_00435 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_00440 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_00450 PF00468 Ribosomal protein L34 AMS64_00455 PF00825 Ribonuclease P AMS64_00460 PF02096 60Kd inner membrane protein AMS64_00460 PF14849 YidC periplasmic domain AMS64_00465 PF01926 50S ribosome-binding GTPase AMS64_00465 PF10396 GTP-binding protein TrmE N-terminus AMS64_00465 PF12631 MnmE helical domain AMS64_00470 PF01032 FecCD transport family AMS64_00475 PF01497 Periplasmic binding protein AMS64_00480 PF00005 ABC transporter AMS64_00485 PF00005 ABC transporter AMS64_00490 PF00593 TonB dependent receptor AMS64_00490 PF07715 TonB-dependent Receptor Plug Domain AMS64_00495 PF00258 Flavodoxin AMS64_00500 PF13932 GidA associated domain AMS64_00500 PF01134 Glucose inhibited division protein A AMS64_00505 PF02527 rRNA small subunit methyltransferase G AMS64_00510 PF13614 AAA domain AMS64_00515 PF02195 ParB-like nuclease domain AMS64_00515 PF17762 HTH domain found in ParB protein AMS64_00525 PF00119 ATP synthase A chain AMS64_00530 PF00137 ATP synthase subunit C AMS64_00535 PF00430 ATP synthase B/B' CF(0) AMS64_00540 PF00213 ATP synthase delta (OSCP) subunit AMS64_00545 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_00545 PF00306 ATP synthase alpha/beta chain, C terminal domain AMS64_00545 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS64_00550 PF00231 ATP synthase AMS64_00555 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS64_00555 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_00560 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AMS64_00560 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AMS64_00565 PF12804 MobA-like NTP transferase domain AMS64_00565 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_00565 PF14602 Hexapeptide repeat of succinyl-transferase AMS64_00570 PF06123 Inner membrane protein CreD AMS64_00580 PF00905 Penicillin binding protein transpeptidase domain AMS64_00585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00585 PF00512 His Kinase A (phospho-acceptor) domain AMS64_00585 PF00672 HAMP domain AMS64_00590 PF00486 Transcriptional regulatory protein, C terminal AMS64_00590 PF00072 Response regulator receiver domain AMS64_00595 PF08220 DeoR-like helix-turn-helix domain AMS64_00595 PF00455 DeoR C terminal sensor domain AMS64_00600 PF01380 SIS domain AMS64_00605 PF03472 Autoinducer binding domain AMS64_00605 PF00196 Bacterial regulatory proteins, luxR family AMS64_00615 PF01618 MotA/TolQ/ExbB proton channel family AMS64_00620 PF01618 MotA/TolQ/ExbB proton channel family AMS64_00625 PF02472 Biopolymer transport protein ExbD/TolR AMS64_00630 PF03544 Gram-negative bacterial TonB protein C-terminal AMS64_00665 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AMS64_00670 PF07969 Amidohydrolase family AMS64_00675 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AMS64_00680 PF01209 ubiE/COQ5 methyltransferase family AMS64_00685 PF02036 SCP-2 sterol transfer family AMS64_00690 PF03109 ABC1 family AMS64_00695 PF02416 mttA/Hcf106 family AMS64_00700 PF02416 mttA/Hcf106 family AMS64_00705 PF00902 Sec-independent protein translocase protein (TatC) AMS64_00710 PF01026 TatD related DNase AMS64_00715 PF00490 Delta-aminolevulinic acid dehydratase AMS64_00720 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMS64_00720 PF18416 N-acetylglucosamine binding protein domain 2 AMS64_00725 PF00704 Glycosyl hydrolases family 18 AMS64_00735 PF01432 Peptidase family M3 AMS64_00740 PF00990 Diguanylate cyclase, GGDEF domain AMS64_00740 PF03707 Bacterial signalling protein N terminal repeat AMS64_00740 PF00563 EAL domain AMS64_00750 PF04445 Putative SAM-dependent methyltransferase AMS64_00760 PF02541 Ppx/GppA phosphatase family AMS64_00765 PF00271 Helicase conserved C-terminal domain AMS64_00765 PF00270 DEAD/DEAH box helicase AMS64_00770 PF00085 Thioredoxin AMS64_00775 PF07497 Rho termination factor, RNA-binding domain AMS64_00775 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_00775 PF07498 Rho termination factor, N-terminal domain AMS64_00785 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AMS64_00790 PF00175 Oxidoreductase NAD-binding domain AMS64_00795 PF00563 EAL domain AMS64_00795 PF00990 Diguanylate cyclase, GGDEF domain AMS64_00795 PF08447 PAS fold AMS64_00795 PF08448 PAS fold AMS64_00800 PF04380 Membrane fusogenic activity AMS64_00805 PF12262 Bacterial virulence factor lipase N-terminal AMS64_00810 PF12122 Cytoplasmic N-terminal domain of rhomboid serine protease AMS64_00810 PF01694 Rhomboid family AMS64_00815 PF00581 Rhodanese-like domain AMS64_00820 PF00005 ABC transporter AMS64_00825 PF00005 ABC transporter AMS64_00825 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS64_00830 PF11862 Domain of unknown function (DUF3382) AMS64_00830 PF02653 Branched-chain amino acid transport system / permease component AMS64_00835 PF02653 Branched-chain amino acid transport system / permease component AMS64_00840 PF13458 Periplasmic binding protein AMS64_00845 PF00356 Bacterial regulatory proteins, lacI family AMS64_00860 PF05932 Tir chaperone protein (CesT) family AMS64_00865 PF03496 ADP-ribosyltransferase exoenzyme AMS64_00865 PF03545 Yersinia virulence determinant (YopE) AMS64_00870 PF00563 EAL domain AMS64_00870 PF03707 Bacterial signalling protein N terminal repeat AMS64_00870 PF00990 Diguanylate cyclase, GGDEF domain AMS64_00880 PF02092 Glycyl-tRNA synthetase beta subunit AMS64_00880 PF05746 DALR anticodon binding domain AMS64_00885 PF02091 Glycyl-tRNA synthetase alpha subunit AMS64_00890 PF03352 Methyladenine glycosylase AMS64_00895 PF13488 Glycine zipper AMS64_00895 PF00691 OmpA family AMS64_00900 PF01042 Endoribonuclease L-PSP AMS64_00905 PF01206 Sulfurtransferase TusA AMS64_00915 PF01547 Bacterial extracellular solute-binding protein AMS64_00920 PF00672 HAMP domain AMS64_00920 PF00512 His Kinase A (phospho-acceptor) domain AMS64_00920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_00925 PF00486 Transcriptional regulatory protein, C terminal AMS64_00925 PF00072 Response regulator receiver domain AMS64_00930 PF02803 Thiolase, C-terminal domain AMS64_00930 PF00108 Thiolase, N-terminal domain AMS64_00935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS64_00935 PF00378 Enoyl-CoA hydratase/isomerase AMS64_00935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS64_00940 PF00501 AMP-binding enzyme AMS64_00940 PF13193 AMP-binding enzyme C-terminal domain AMS64_00945 PF00557 Metallopeptidase family M24 AMS64_00950 PF09186 Domain of unknown function (DUF1949) AMS64_00950 PF01205 Uncharacterized protein family UPF0029 AMS64_00955 PF02386 Cation transport protein AMS64_00960 PF12724 Flavodoxin domain AMS64_00990 PF00583 Acetyltransferase (GNAT) family AMS64_00990 PF13380 CoA binding domain AMS64_00990 PF13607 Succinyl-CoA ligase like flavodoxin domain AMS64_01005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_01005 PF03466 LysR substrate binding domain AMS64_01010 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AMS64_01010 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AMS64_01015 PF00342 Phosphoglucose isomerase AMS64_01020 PF00924 Mechanosensitive ion channel AMS64_01020 PF05552 Conserved TM helix AMS64_01025 PF00440 Bacterial regulatory proteins, tetR family AMS64_01035 PF00692 dUTPase AMS64_01080 PF00816 H-NS histone family AMS64_01115 PF12462 DNA helicase IV / RNA helicase N terminal AMS64_01115 PF00580 UvrD/REP helicase N-terminal domain AMS64_01115 PF13361 UvrD-like helicase C-terminal domain AMS64_01140 PF00589 Phage integrase family AMS64_01140 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_01150 PF04127 DNA / pantothenate metabolism flavoprotein AMS64_01150 PF02441 Flavoprotein AMS64_01155 PF04002 RadC-like JAB domain AMS64_01160 PF00830 Ribosomal L28 family AMS64_01165 PF00471 Ribosomal protein L33 AMS64_01175 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AMS64_01175 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AMS64_01175 PF06827 Zinc finger found in FPG and IleRS AMS64_01180 PF04393 Protein of unknown function (DUF535) AMS64_01185 PF01467 Cytidylyltransferase-like AMS64_01190 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS64_01195 PF00535 Glycosyl transferase family 2 AMS64_01200 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AMS64_01205 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AMS64_01210 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_01210 PF00107 Zinc-binding dehydrogenase AMS64_01225 PF04345 Chorismate lyase AMS64_01230 PF01040 UbiA prenyltransferase family AMS64_01235 PF01553 Acyltransferase AMS64_01240 PF01726 LexA DNA binding domain AMS64_01240 PF00717 Peptidase S24-like AMS64_01250 PF02630 SCO1/SenC AMS64_01255 PF01554 MatE AMS64_01260 PF00588 SpoU rRNA Methylase family AMS64_01265 PF00672 HAMP domain AMS64_01265 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_01265 PF00512 His Kinase A (phospho-acceptor) domain AMS64_01265 PF16527 Two-component sensor protein CpxA, periplasmic domain AMS64_01270 PF00486 Transcriptional regulatory protein, C terminal AMS64_01270 PF00072 Response regulator receiver domain AMS64_01275 PF16916 Dimerisation domain of Zinc Transporter AMS64_01275 PF01545 Cation efflux family AMS64_01280 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_01280 PF06426 Serine acetyltransferase, N-terminal AMS64_01290 PF06005 Cell division protein ZapB AMS64_01300 PF00476 DNA polymerase family A AMS64_01300 PF01612 3'-5' exonuclease AMS64_01300 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMS64_01300 PF01367 5'-3' exonuclease, C-terminal SAM fold AMS64_01305 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_01330 PF00899 ThiF family AMS64_01335 PF02657 Fe-S metabolism associated domain AMS64_01340 PF00266 Aminotransferase class-V AMS64_01345 PF00580 UvrD/REP helicase N-terminal domain AMS64_01345 PF13361 UvrD-like helicase C-terminal domain AMS64_01350 PF03707 Bacterial signalling protein N terminal repeat AMS64_01350 PF00990 Diguanylate cyclase, GGDEF domain AMS64_01350 PF00563 EAL domain AMS64_01355 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS64_01360 PF00107 Zinc-binding dehydrogenase AMS64_01360 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_01365 PF00155 Aminotransferase class I and II AMS64_01370 PF08360 QacR-like protein, C-terminal region AMS64_01370 PF00440 Bacterial regulatory proteins, tetR family AMS64_01375 PF01370 NAD dependent epimerase/dehydratase family AMS64_01380 PF00534 Glycosyl transferases group 1 AMS64_01390 PF04932 O-Antigen ligase AMS64_01395 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) AMS64_01425 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term AMS64_01425 PF12833 Helix-turn-helix domain AMS64_01430 PF01810 LysE type translocator AMS64_01460 PF14001 YdfZ protein AMS64_01475 PF13361 UvrD-like helicase C-terminal domain AMS64_01475 PF00580 UvrD/REP helicase N-terminal domain AMS64_01500 PF02872 5'-nucleotidase, C-terminal domain AMS64_01500 PF00149 Calcineurin-like phosphoesterase AMS64_01510 PF00571 CBS domain AMS64_01510 PF01769 Divalent cation transporter AMS64_01510 PF03448 MgtE intracellular N domain AMS64_01515 PF14824 Sirohaem biosynthesis protein central AMS64_01515 PF10414 Sirohaem synthase dimerisation region AMS64_01515 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS64_01520 PF01226 Formate/nitrite transporter AMS64_01525 PF13806 Rieske-like [2Fe-2S] domain AMS64_01530 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_01530 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMS64_01530 PF04324 BFD-like [2Fe-2S] binding domain AMS64_01530 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMS64_01530 PF18267 Rubredoxin NAD+ reductase C-terminal domain AMS64_01535 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_01535 PF07724 AAA domain (Cdc48 subfamily) AMS64_01535 PF10431 C-terminal, D2-small domain, of ClpB protein AMS64_01540 PF00227 Proteasome subunit AMS64_01550 PF03485 Arginyl tRNA synthetase N terminal domain AMS64_01550 PF05746 DALR anticodon binding domain AMS64_01550 PF00750 tRNA synthetases class I (R) AMS64_01560 PF04542 Sigma-70 region 2 AMS64_01560 PF04545 Sigma-70, region 4 AMS64_01570 PF02673 Bacitracin resistance protein BacA AMS64_01575 PF01263 Aldose 1-epimerase AMS64_01580 PF00288 GHMP kinases N terminal domain AMS64_01580 PF10509 Galactokinase galactose-binding signature AMS64_01580 PF08544 GHMP kinases C terminal AMS64_01585 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AMS64_01585 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AMS64_01590 PF16363 GDP-mannose 4,6 dehydratase AMS64_01595 PF00356 Bacterial regulatory proteins, lacI family AMS64_01600 PF16353 Domain of unknown function(DUF4981) AMS64_01600 PF02837 Glycosyl hydrolases family 2, sugar binding domain AMS64_01600 PF02836 Glycosyl hydrolases family 2, TIM barrel domain AMS64_01600 PF00703 Glycosyl hydrolases family 2 AMS64_01600 PF02929 Beta galactosidase small chain AMS64_01605 PF13407 Periplasmic binding protein domain AMS64_01610 PF00005 ABC transporter AMS64_01615 PF02653 Branched-chain amino acid transport system / permease component AMS64_01620 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_01620 PF00672 HAMP domain AMS64_01620 PF02743 Cache domain AMS64_01625 PF05958 tRNA (Uracil-5-)-methyltransferase AMS64_01640 PF02903 Alpha amylase, N-terminal ig-like domain AMS64_01640 PF00128 Alpha amylase, catalytic domain AMS64_01655 PF00012 Hsp70 protein AMS64_01660 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS64_01660 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS64_01665 PF05981 CreA protein AMS64_01680 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMS64_01685 PF00120 Glutamine synthetase, catalytic domain AMS64_01690 PF00202 Aminotransferase class-III AMS64_01695 PF13416 Bacterial extracellular solute-binding protein AMS64_01700 PF13416 Bacterial extracellular solute-binding protein AMS64_01705 PF08402 TOBE domain AMS64_01705 PF00005 ABC transporter AMS64_01710 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_01715 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_01720 PF03473 MOSC domain AMS64_01720 PF03475 3-alpha domain AMS64_01735 PF03061 Thioesterase superfamily AMS64_01740 PF00271 Helicase conserved C-terminal domain AMS64_01740 PF00570 HRDC domain AMS64_01740 PF16124 RecQ zinc-binding AMS64_01740 PF09382 RQC domain AMS64_01740 PF00270 DEAD/DEAH box helicase AMS64_01745 PF00034 Cytochrome c AMS64_01750 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AMS64_01760 PF02592 Putative vitamin uptake transporter AMS64_01765 PF03737 Aldolase/RraA AMS64_01770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_01770 PF00672 HAMP domain AMS64_01780 PF01197 Ribosomal protein L31 AMS64_01785 PF17764 3′ DNA-binding domain (3′BD) AMS64_01785 PF18074 Primosomal protein N C-terminal domain AMS64_01785 PF00271 Helicase conserved C-terminal domain AMS64_01785 PF00270 DEAD/DEAH box helicase AMS64_01785 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AMS64_01795 PF13460 NAD(P)H-binding AMS64_01795 PF11066 Protein of unknown function (DUF2867) AMS64_01800 PF03222 Tryptophan/tyrosine permease family AMS64_01805 PF00390 Malic enzyme, N-terminal domain AMS64_01805 PF03949 Malic enzyme, NAD binding domain AMS64_01810 PF03631 Virulence factor BrkB AMS64_01815 PF02580 D-Tyr-tRNA(Tyr) deacylase AMS64_01820 PF17284 Spermidine synthase tetramerisation domain AMS64_01825 PF09500 Putative thioesterase (yiiD_Cterm) AMS64_01825 PF00583 Acetyltransferase (GNAT) family AMS64_01835 PF00270 DEAD/DEAH box helicase AMS64_01835 PF17191 RecG wedge domain AMS64_01835 PF00271 Helicase conserved C-terminal domain AMS64_01840 PF13091 PLD-like domain AMS64_01845 PF02447 GntP family permease AMS64_01850 PF01202 Shikimate kinase AMS64_01855 PF00920 Dehydratase family AMS64_01860 PF01081 KDPG and KHG aldolase AMS64_01865 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS64_01865 PF00356 Bacterial regulatory proteins, lacI family AMS64_01875 PF01551 Peptidase family M23 AMS64_01880 PF01676 Metalloenzyme superfamily AMS64_01880 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AMS64_01885 PF00581 Rhodanese-like domain AMS64_01890 PF02556 Preprotein translocase subunit SecB AMS64_01895 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AMS64_01895 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AMS64_01900 PF01521 Iron-sulphur cluster biosynthesis AMS64_01900 PF01106 NifU-like domain AMS64_01905 PF00156 Phosphoribosyl transferase domain AMS64_01910 PF00561 alpha/beta hydrolase fold AMS64_01930 PF09371 Tex-like protein N-terminal domain AMS64_01930 PF00575 S1 RNA binding domain AMS64_01930 PF16921 Tex protein YqgF-like domain AMS64_01930 PF17674 HHH domain AMS64_01935 PF03449 Transcription elongation factor, N-terminal AMS64_01935 PF01272 Transcription elongation factor, GreA/GreB, C-term AMS64_01940 PF00486 Transcriptional regulatory protein, C terminal AMS64_01940 PF00072 Response regulator receiver domain AMS64_01945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_01945 PF00512 His Kinase A (phospho-acceptor) domain AMS64_01945 PF00672 HAMP domain AMS64_01955 PF00338 Ribosomal protein S10p/S20e AMS64_01960 PF00297 Ribosomal protein L3 AMS64_01965 PF00573 Ribosomal protein L4/L1 family AMS64_01970 PF00276 Ribosomal protein L23 AMS64_01975 PF03947 Ribosomal Proteins L2, C-terminal domain AMS64_01975 PF00181 Ribosomal Proteins L2, RNA binding domain AMS64_01980 PF00203 Ribosomal protein S19 AMS64_01985 PF00237 Ribosomal protein L22p/L17e AMS64_01990 PF07650 KH domain AMS64_01990 PF00189 Ribosomal protein S3, C-terminal domain AMS64_01995 PF00252 Ribosomal protein L16p/L10e AMS64_02000 PF00831 Ribosomal L29 protein AMS64_02005 PF00366 Ribosomal protein S17 AMS64_02010 PF00238 Ribosomal protein L14p/L23e AMS64_02015 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AMS64_02015 PF00467 KOW motif AMS64_02020 PF00281 Ribosomal protein L5 AMS64_02020 PF00673 ribosomal L5P family C-terminus AMS64_02025 PF00253 Ribosomal protein S14p/S29e AMS64_02030 PF00410 Ribosomal protein S8 AMS64_02035 PF00347 Ribosomal protein L6 AMS64_02040 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AMS64_02045 PF03719 Ribosomal protein S5, C-terminal domain AMS64_02045 PF00333 Ribosomal protein S5, N-terminal domain AMS64_02050 PF00327 Ribosomal protein L30p/L7e AMS64_02055 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AMS64_02060 PF00344 SecY translocase AMS64_02065 PF00416 Ribosomal protein S13/S18 AMS64_02070 PF00411 Ribosomal protein S11 AMS64_02075 PF00163 Ribosomal protein S4/S9 N-terminal domain AMS64_02075 PF01479 S4 domain AMS64_02080 PF01000 RNA polymerase Rpb3/RpoA insert domain AMS64_02080 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AMS64_02080 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AMS64_02085 PF01196 Ribosomal protein L17 AMS64_02115 PF00593 TonB dependent receptor AMS64_02115 PF07715 TonB-dependent Receptor Plug Domain AMS64_02120 PF00990 Diguanylate cyclase, GGDEF domain AMS64_02120 PF17151 Periplasmic sensor domain AMS64_02125 PF00672 HAMP domain AMS64_02125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_02125 PF00512 His Kinase A (phospho-acceptor) domain AMS64_02130 PF00486 Transcriptional regulatory protein, C terminal AMS64_02130 PF00072 Response regulator receiver domain AMS64_02145 PF03466 LysR substrate binding domain AMS64_02145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_02155 PF17954 Quercetinase C-terminal cupin domain AMS64_02155 PF02678 Pirin AMS64_02160 PF07681 DoxX AMS64_02165 PF17946 RecC C-terminal domain AMS64_02170 PF12705 PD-(D/E)XK nuclease superfamily AMS64_02170 PF13361 UvrD-like helicase C-terminal domain AMS64_02170 PF00580 UvrD/REP helicase N-terminal domain AMS64_02175 PF13538 UvrD-like helicase C-terminal domain AMS64_02185 PF00990 Diguanylate cyclase, GGDEF domain AMS64_02185 PF17151 Periplasmic sensor domain AMS64_02200 PF00392 Bacterial regulatory proteins, gntR family AMS64_02200 PF07702 UTRA domain AMS64_02215 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_02225 PF08402 TOBE domain AMS64_02225 PF00005 ABC transporter AMS64_02235 PF00990 Diguanylate cyclase, GGDEF domain AMS64_02255 PF01053 Cys/Met metabolism PLP-dependent enzyme AMS64_02260 PF12793 Sugar transport-related sRNA regulator N-term AMS64_02260 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_02265 PF00141 Peroxidase AMS64_02280 PF03280 Proteobacterial lipase chaperone protein AMS64_02285 PF00561 alpha/beta hydrolase fold AMS64_02290 PF00579 tRNA synthetases class I (W and Y) AMS64_02290 PF01479 S4 domain AMS64_02295 PF00196 Bacterial regulatory proteins, luxR family AMS64_02315 PF00199 Catalase AMS64_02315 PF06628 Catalase-related immune-responsive AMS64_02320 PF00583 Acetyltransferase (GNAT) family AMS64_02340 PF10458 Valyl tRNA synthetase tRNA binding arm AMS64_02340 PF08264 Anticodon-binding domain of tRNA AMS64_02340 PF00133 tRNA synthetases class I (I, L, M and V) AMS64_02350 PF02789 Cytosol aminopeptidase family, N-terminal domain AMS64_02350 PF00883 Cytosol aminopeptidase family, catalytic domain AMS64_02355 PF03739 Lipopolysaccharide export system permease LptF/LptG AMS64_02360 PF03739 Lipopolysaccharide export system permease LptF/LptG AMS64_02595 PF00589 Phage integrase family AMS64_02595 PF13356 Arm DNA-binding domain AMS64_02630 PF07715 TonB-dependent Receptor Plug Domain AMS64_02630 PF00593 TonB dependent receptor AMS64_02640 PF00768 D-alanyl-D-alanine carboxypeptidase AMS64_02645 PF13520 Amino acid permease AMS64_02665 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AMS64_02680 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase AMS64_02685 PF02602 Uroporphyrinogen-III synthase HemD AMS64_02690 PF03900 Porphobilinogen deaminase, C-terminal domain AMS64_02690 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AMS64_02695 PF12633 Adenylate cyclase NT domain AMS64_02695 PF01295 Adenylate cyclase, class-I AMS64_02700 PF02230 Phospholipase/Carboxylesterase AMS64_02705 PF01491 Frataxin-like domain AMS64_02710 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMS64_02710 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMS64_02715 PF01678 Diaminopimelate epimerase AMS64_02725 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_02725 PF00589 Phage integrase family AMS64_02730 PF13419 Haloacid dehalogenase-like hydrolase AMS64_02740 PF13545 Crp-like helix-turn-helix domain AMS64_02740 PF00027 Cyclic nucleotide-binding domain AMS64_02750 PF07722 Peptidase C26 AMS64_02755 PF04751 Protein of unknown function (DUF615) AMS64_02760 PF01523 Putative modulator of DNA gyrase AMS64_02765 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS64_02770 PF01722 BolA-like protein AMS64_02780 PF05494 MlaC protein AMS64_02785 PF02470 MlaD protein AMS64_02790 PF02405 Permease MlaE AMS64_02795 PF00005 ABC transporter AMS64_02800 PF01380 SIS domain AMS64_02800 PF00571 CBS domain AMS64_02810 PF06835 Lipopolysaccharide-assembly, LptC-related AMS64_02815 PF03968 OstA-like protein AMS64_02820 PF12399 Branched-chain amino acid ATP-binding cassette transporter AMS64_02820 PF00005 ABC transporter AMS64_02825 PF00309 Sigma-54 factor, Activator interacting domain (AID) AMS64_02825 PF04963 Sigma-54 factor, core binding domain AMS64_02825 PF04552 Sigma-54, DNA binding domain AMS64_02830 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMS64_02835 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_02840 PF03668 P-loop ATPase protein family AMS64_02845 PF00381 PTS HPr component phosphorylation site AMS64_02850 PF00874 PRD domain AMS64_02850 PF05043 Mga helix-turn-helix domain AMS64_02850 PF08279 HTH domain AMS64_02850 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_02855 PF07071 KDGP aldolase AMS64_02860 PF03841 L-seryl-tRNA selenium transferase AMS64_02865 PF01979 Amidohydrolase family AMS64_02895 PF13180 PDZ domain AMS64_02900 PF00595 PDZ domain AMS64_02900 PF13180 PDZ domain AMS64_02910 PF03969 AFG1-like ATPase AMS64_02915 PF00572 Ribosomal protein L13 AMS64_02920 PF00380 Ribosomal protein S9/S16 AMS64_02925 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AMS64_02925 PF00355 Rieske [2Fe-2S] domain AMS64_02930 PF00032 Cytochrome b(C-terminal)/b6/petD AMS64_02930 PF00033 Cytochrome b/b6/petB AMS64_02935 PF02167 Cytochrome C1 family AMS64_02940 PF00043 Glutathione S-transferase, C-terminal domain AMS64_02940 PF02798 Glutathione S-transferase, N-terminal domain AMS64_02945 PF04386 Stringent starvation protein B AMS64_02950 PF04972 BON domain AMS64_02955 PF13580 SIS domain AMS64_02960 PF02021 Uncharacterised protein family UPF0102 AMS64_02965 PF04348 LppC putative lipoprotein AMS64_02970 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS64_03005 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS64_03010 PF00813 FliP family AMS64_03015 PF01313 Bacterial export proteins, family 3 AMS64_03020 PF01311 Bacterial export proteins, family 1 AMS64_03025 PF01312 FlhB HrpN YscU SpaS Family AMS64_03030 PF00771 FHIPEP family AMS64_03035 PF00072 Response regulator receiver domain AMS64_03035 PF00158 Sigma-54 interaction domain AMS64_03035 PF02954 Bacterial regulatory protein, Fis family AMS64_03040 PF02049 Flagellar hook-basal body complex protein FliE AMS64_03045 PF01514 Secretory protein of YscJ/FliF family AMS64_03045 PF08345 Flagellar M-ring protein C-terminal AMS64_03050 PF01706 FliG C-terminal domain AMS64_03050 PF14841 FliG middle domain AMS64_03050 PF14842 FliG N-terminal domain AMS64_03060 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_03060 PF18269 T3SS EscN ATPase C-terminal domain AMS64_03085 PF00460 Flagella basal body rod protein AMS64_03090 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_03090 PF00460 Flagella basal body rod protein AMS64_03095 PF13861 FlgD Tudor-like domain AMS64_03095 PF13860 FlgD Ig-like domain AMS64_03095 PF03963 Flagellar hook capping protein - N-terminal region AMS64_03100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_03100 PF07559 Flagellar basal body protein FlaE AMS64_03100 PF00460 Flagella basal body rod protein AMS64_03105 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_03105 PF00460 Flagella basal body rod protein AMS64_03110 PF00460 Flagella basal body rod protein AMS64_03110 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_03115 PF02107 Flagellar L-ring protein AMS64_03120 PF02119 Flagellar P-ring protein AMS64_03130 PF00460 Flagella basal body rod protein AMS64_03130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_03135 PF00669 Bacterial flagellin N-terminal helical region AMS64_03150 PF00669 Bacterial flagellin N-terminal helical region AMS64_03150 PF00700 Bacterial flagellin C-terminal helical region AMS64_03155 PF02465 Flagellar hook-associated protein 2 N-terminus AMS64_03155 PF07195 Flagellar hook-associated protein 2 C-terminus AMS64_03155 PF07196 Flagellin hook IN motif AMS64_03160 PF02561 Flagellar protein FliS AMS64_03180 PF04545 Sigma-70, region 4 AMS64_03180 PF04542 Sigma-70 region 2 AMS64_03185 PF01618 MotA/TolQ/ExbB proton channel family AMS64_03190 PF00691 OmpA family AMS64_03190 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMS64_03195 PF01464 Transglycosylase SLT domain AMS64_03195 PF01476 LysM domain AMS64_03205 PF02381 MraZ protein, putative antitoxin-like AMS64_03210 PF01795 MraW methylase family AMS64_03215 PF04999 Cell division protein FtsL AMS64_03220 PF00905 Penicillin binding protein transpeptidase domain AMS64_03220 PF03717 Penicillin-binding Protein dimerisation domain AMS64_03225 PF08245 Mur ligase middle domain AMS64_03225 PF02875 Mur ligase family, glutamate ligase domain AMS64_03225 PF01225 Mur ligase family, catalytic domain AMS64_03230 PF08245 Mur ligase middle domain AMS64_03230 PF01225 Mur ligase family, catalytic domain AMS64_03230 PF02875 Mur ligase family, glutamate ligase domain AMS64_03235 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AMS64_03235 PF00953 Glycosyl transferase family 4 AMS64_03240 PF02875 Mur ligase family, glutamate ligase domain AMS64_03240 PF08245 Mur ligase middle domain AMS64_03245 PF01098 Cell cycle protein AMS64_03250 PF04101 Glycosyltransferase family 28 C-terminal domain AMS64_03250 PF03033 Glycosyltransferase family 28 N-terminal domain AMS64_03255 PF02875 Mur ligase family, glutamate ligase domain AMS64_03255 PF08245 Mur ligase middle domain AMS64_03255 PF01225 Mur ligase family, catalytic domain AMS64_03260 PF03799 Cell division protein FtsQ AMS64_03260 PF08478 POTRA domain, FtsQ-type AMS64_03265 PF02491 SHS2 domain inserted in FTSA AMS64_03270 PF12327 FtsZ family, C-terminal domain AMS64_03270 PF00091 Tubulin/FtsZ family, GTPase domain AMS64_03275 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AMS64_03285 PF01043 SecA preprotein cross-linking domain AMS64_03285 PF07516 SecA Wing and Scaffold domain AMS64_03285 PF07517 SecA DEAD-like domain AMS64_03285 PF02810 SEC-C motif AMS64_03290 PF00293 NUDIX domain AMS64_03295 PF03884 DNA gyrase inhibitor YacG AMS64_03300 PF07072 Cell division protein AMS64_03305 PF01121 Dephospho-CoA kinase AMS64_03310 PF06750 Bacterial Peptidase A24 N-terminal domain AMS64_03310 PF01478 Type IV leader peptidase family AMS64_03315 PF00482 Type II secretion system (T2SS), protein F AMS64_03320 PF00437 Type II/IV secretion system protein AMS64_03320 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMS64_03325 PF07963 Prokaryotic N-terminal methylation motif AMS64_03330 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AMS64_03330 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AMS64_03340 PF01510 N-acetylmuramoyl-L-alanine amidase AMS64_03345 PF07729 FCD domain AMS64_03345 PF00392 Bacterial regulatory proteins, gntR family AMS64_03350 PF17831 Pyruvate dehydrogenase E1 component middle domain AMS64_03350 PF00456 Transketolase, thiamine diphosphate binding domain AMS64_03355 PF00364 Biotin-requiring enzyme AMS64_03355 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMS64_03355 PF02817 e3 binding domain AMS64_03360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS64_03360 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_03365 PF00563 EAL domain AMS64_03365 PF00990 Diguanylate cyclase, GGDEF domain AMS64_03365 PF03707 Bacterial signalling protein N terminal repeat AMS64_03370 PF12729 Four helix bundle sensory module for signal transduction AMS64_03370 PF00672 HAMP domain AMS64_03370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_03375 PF01734 Patatin-like phospholipase AMS64_03380 PF00330 Aconitase family (aconitate hydratase) AMS64_03380 PF11791 Aconitate B N-terminal domain AMS64_03380 PF06434 Aconitate hydratase 2 N-terminus AMS64_03395 PF07683 Cobalamin synthesis protein cobW C-terminal domain AMS64_03395 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS64_03400 PF00873 AcrB/AcrD/AcrF family AMS64_03415 PF07690 Major Facilitator Superfamily AMS64_03425 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMS64_03430 PF02152 Dihydroneopterin aldolase AMS64_03435 PF02660 Glycerol-3-phosphate acyltransferase AMS64_03485 PF14698 Argininosuccinate lyase C-terminal AMS64_03485 PF00206 Lyase AMS64_03490 PF00764 Arginosuccinate synthase AMS64_03495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS64_03495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS64_03500 PF00696 Amino acid kinase family AMS64_03505 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMS64_03505 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMS64_03510 PF07687 Peptidase dimerisation domain AMS64_03510 PF01546 Peptidase family M20/M25/M40 AMS64_03515 PF00311 Phosphoenolpyruvate carboxylase AMS64_03520 PF04073 Aminoacyl-tRNA editing domain AMS64_03535 PF03466 LysR substrate binding domain AMS64_03535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_03540 PF03788 LrgA family AMS64_03545 PF04172 LrgB-like family AMS64_03555 PF01734 Patatin-like phospholipase AMS64_03560 PF05190 MutS family domain IV AMS64_03560 PF05192 MutS domain III AMS64_03560 PF00488 MutS domain V AMS64_03560 PF05188 MutS domain II AMS64_03560 PF01624 MutS domain I AMS64_03565 PF02464 Competence-damaged protein AMS64_03570 PF00154 recA bacterial DNA recombination protein AMS64_03575 PF02631 RecX family AMS64_03580 PF01411 tRNA synthetases class II (A) AMS64_03580 PF02272 DHHA1 domain AMS64_03580 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS64_03585 PF00696 Amino acid kinase family AMS64_03585 PF13840 ACT domain AMS64_03585 PF01842 ACT domain AMS64_03590 PF02599 Global regulator protein family AMS64_03615 PF00768 D-alanyl-D-alanine carboxypeptidase AMS64_03620 PF09335 SNARE associated Golgi protein AMS64_03625 PF00571 CBS domain AMS64_03625 PF03471 Transporter associated domain AMS64_03625 PF01595 Cyclin M transmembrane N-terminal domain AMS64_03630 PF17763 Glutaminase/Asparaginase C-terminal domain AMS64_03630 PF00710 Asparaginase, N-terminal AMS64_03645 PF00356 Bacterial regulatory proteins, lacI family AMS64_03650 PF00367 phosphotransferase system, EIIB AMS64_03650 PF02378 Phosphotransferase system, EIIC AMS64_03655 PF11941 Domain of unknown function (DUF3459) AMS64_03655 PF00128 Alpha amylase, catalytic domain AMS64_03660 PF14602 Hexapeptide repeat of succinyl-transferase AMS64_03660 PF12464 Maltose acetyltransferase AMS64_03670 PF00849 RNA pseudouridylate synthase AMS64_03675 PF18339 RapA N-terminal Tudor like domain 1 AMS64_03675 PF18337 RapA N-terminal Tudor like domain AMS64_03675 PF00176 SNF2 family N-terminal domain AMS64_03675 PF00271 Helicase conserved C-terminal domain AMS64_03675 PF12137 RNA polymerase recycling family C-terminal AMS64_03705 PF04363 Protein of unknown function (DUF496) AMS64_03725 PF02464 Competence-damaged protein AMS64_03725 PF00994 Probable molybdopterin binding domain AMS64_03735 PF04204 Homoserine O-succinyltransferase AMS64_03745 PF01037 Lrp/AsnC ligand binding domain AMS64_03750 PF00884 Sulfatase AMS64_03765 PF02903 Alpha amylase, N-terminal ig-like domain AMS64_03765 PF00128 Alpha amylase, catalytic domain AMS64_03765 PF16657 Maltogenic Amylase, C-terminal domain AMS64_03785 PF00106 short chain dehydrogenase AMS64_03790 PF03577 Peptidase family C69 AMS64_03800 PF00465 Iron-containing alcohol dehydrogenase AMS64_03805 PF02142 MGS-like domain AMS64_03815 PF00210 Ferritin-like domain AMS64_03830 PF08351 Domain of unknown function (DUF1726) AMS64_03830 PF13718 GNAT acetyltransferase 2 AMS64_03830 PF05127 Helicase AMS64_03830 PF17176 tRNA-binding domain AMS64_03835 PF00106 short chain dehydrogenase AMS64_03840 PF00072 Response regulator receiver domain AMS64_03840 PF01584 CheW-like domain AMS64_03850 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMS64_03850 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMS64_03855 PF02698 DUF218 domain AMS64_03860 PF08453 Peptidase family M9 N-terminal AMS64_03860 PF01752 Collagenase AMS64_03865 PF00501 AMP-binding enzyme AMS64_03870 PF13378 Enolase C-terminal domain-like AMS64_03875 PF00378 Enoyl-CoA hydratase/isomerase AMS64_03880 PF12697 Alpha/beta hydrolase family AMS64_03885 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS64_03885 PF16582 Middle domain of thiamine pyrophosphate AMS64_03885 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS64_03890 PF00425 chorismate binding enzyme AMS64_03895 PF01040 UbiA prenyltransferase family AMS64_03915 PF00271 Helicase conserved C-terminal domain AMS64_03915 PF00270 DEAD/DEAH box helicase AMS64_03915 PF03880 DbpA RNA binding domain AMS64_03920 PF07670 Nucleoside recognition AMS64_03920 PF07662 Na+ dependent nucleoside transporter C-terminus AMS64_03920 PF01773 Na+ dependent nucleoside transporter N-terminus AMS64_03925 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMS64_03930 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AMS64_03935 PF01544 CorA-like Mg2+ transporter protein AMS64_03950 PF00684 DnaJ central domain AMS64_03950 PF01556 DnaJ C terminal domain AMS64_03950 PF00226 DnaJ domain AMS64_03960 PF05068 Mannitol repressor AMS64_03965 PF01232 Mannitol dehydrogenase Rossmann domain AMS64_03965 PF08125 Mannitol dehydrogenase C-terminal domain AMS64_03970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMS64_03970 PF02378 Phosphotransferase system, EIIC AMS64_03970 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_03975 PF03279 Bacterial lipid A biosynthesis acyltransferase AMS64_03980 PF00294 pfkB family carbohydrate kinase AMS64_03980 PF01467 Cytidylyltransferase-like AMS64_03985 PF02321 Outer membrane efflux protein AMS64_03990 PF00293 NUDIX domain AMS64_03995 PF06853 Protein of unknown function (DUF1249) AMS64_04000 PF00149 Calcineurin-like phosphoesterase AMS64_04005 PF05728 Uncharacterised protein family (UPF0227) AMS64_04010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_04010 PF00986 DNA gyrase B subunit, carboxyl terminus AMS64_04010 PF00204 DNA gyrase B AMS64_04010 PF01751 Toprim domain AMS64_04015 PF03989 DNA gyrase C-terminal domain, beta-propeller AMS64_04015 PF00521 DNA gyrase/topoisomerase IV, subunit A AMS64_04030 PF00854 POT family AMS64_04050 PF00684 DnaJ central domain AMS64_04050 PF01556 DnaJ C terminal domain AMS64_04050 PF00226 DnaJ domain AMS64_04065 PF03466 LysR substrate binding domain AMS64_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_04070 PF00578 AhpC/TSA family AMS64_04090 PF01553 Acyltransferase AMS64_04095 PF04012 PspA/IM30 family AMS64_04110 PF01541 GIY-YIG catalytic domain AMS64_04120 PF00892 EamA-like transporter family AMS64_04125 PF03167 Uracil DNA glycosylase superfamily AMS64_04130 PF00892 EamA-like transporter family AMS64_04135 PF03466 LysR substrate binding domain AMS64_04135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_04140 PF00950 ABC 3 transport family AMS64_04145 PF00005 ABC transporter AMS64_04150 PF01297 Zinc-uptake complex component A periplasmic AMS64_04170 PF01476 LysM domain AMS64_04170 PF08525 Opacity-associated protein A N-terminal motif AMS64_04170 PF01551 Peptidase family M23 AMS64_04175 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS64_04180 PF04222 Protein of unknown function (DUF416) AMS64_04195 PF02028 BCCT, betaine/carnitine/choline family transporter AMS64_04200 PF01966 HD domain AMS64_04200 PF01743 Poly A polymerase head domain AMS64_04200 PF12627 Probable RNA and SrmB- binding site of polymerase A AMS64_04205 PF14815 NUDIX domain AMS64_04205 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS64_04205 PF00633 Helix-hairpin-helix motif AMS64_04205 PF10576 Iron-sulfur binding domain of endonuclease III AMS64_04210 PF04362 Bacterial Fe(2+) trafficking AMS64_04215 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AMS64_04215 PF01464 Transglycosylase SLT domain AMS64_04220 PF04076 Bacterial OB fold (BOF) protein AMS64_04225 PF00657 GDSL-like Lipase/Acylhydrolase AMS64_04230 PF00691 OmpA family AMS64_04230 PF01389 OmpA-like transmembrane domain AMS64_04235 PF00990 Diguanylate cyclase, GGDEF domain AMS64_04240 PF00773 RNB domain AMS64_04240 PF08461 Ribonuclease R winged-helix domain AMS64_04240 PF17876 Cold shock domain AMS64_04240 PF00575 S1 RNA binding domain AMS64_04240 PF08206 Ribonuclease B OB domain AMS64_04250 PF00665 Integrase core domain AMS64_04255 PF01548 Transposase AMS64_04255 PF02371 Transposase IS116/IS110/IS902 family AMS64_04275 PF08032 RNA 2'-O ribose methyltransferase substrate binding AMS64_04275 PF00588 SpoU rRNA Methylase family AMS64_04285 PF13673 Acetyltransferase (GNAT) domain AMS64_04290 PF00270 DEAD/DEAH box helicase AMS64_04290 PF00271 Helicase conserved C-terminal domain AMS64_04295 PF05175 Methyltransferase small domain AMS64_04300 PF05525 Branched-chain amino acid transport protein AMS64_04305 PF05525 Branched-chain amino acid transport protein AMS64_04325 PF01207 Dihydrouridine synthase (Dus) AMS64_04330 PF08447 PAS fold AMS64_04330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_04340 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_04350 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_04355 PF10952 Protein of unknown function (DUF2753) AMS64_04360 PF00378 Enoyl-CoA hydratase/isomerase AMS64_04375 PF00106 short chain dehydrogenase AMS64_04380 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS64_04380 PF04073 Aminoacyl-tRNA editing domain AMS64_04380 PF03129 Anticodon binding domain AMS64_04385 PF05958 tRNA (Uracil-5-)-methyltransferase AMS64_04385 PF01938 TRAM domain AMS64_04390 PF03886 ABC-type transport auxiliary lipoprotein component AMS64_04395 PF02470 MlaD protein AMS64_04400 PF04403 Paraquat-inducible protein A AMS64_04405 PF17209 Hfq protein AMS64_04410 PF13419 Haloacid dehalogenase-like hydrolase AMS64_04420 PF01590 GAF domain AMS64_04420 PF00360 Phytochrome region AMS64_04420 PF00563 EAL domain AMS64_04420 PF00990 Diguanylate cyclase, GGDEF domain AMS64_04425 PF00773 RNB domain AMS64_04425 PF08206 Ribonuclease B OB domain AMS64_04425 PF17876 Cold shock domain AMS64_04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_04430 PF03466 LysR substrate binding domain AMS64_04435 PF00765 Autoinducer synthase AMS64_04440 PF00196 Bacterial regulatory proteins, luxR family AMS64_04440 PF03472 Autoinducer binding domain AMS64_04445 PF01810 LysE type translocator AMS64_04450 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_04450 PF00672 HAMP domain AMS64_04455 PF01330 RuvA N terminal domain AMS64_04455 PF07499 RuvA, C-terminal domain AMS64_04460 PF05496 Holliday junction DNA helicase RuvB P-loop domain AMS64_04460 PF05491 RuvB C-terminal winged helix domain AMS64_04460 PF17864 RuvB AAA lid domain AMS64_04465 PF01654 Cytochrome bd terminal oxidase subunit I AMS64_04470 PF02322 Cytochrome bd terminal oxidase subunit II AMS64_04480 PF03061 Thioesterase superfamily AMS64_04485 PF01618 MotA/TolQ/ExbB proton channel family AMS64_04490 PF02472 Biopolymer transport protein ExbD/TolR AMS64_04500 PF04052 TolB amino-terminal domain AMS64_04500 PF07676 WD40-like Beta Propeller Repeat AMS64_04505 PF00691 OmpA family AMS64_04510 PF16331 TolA binding protein trimerisation AMS64_04510 PF13174 Tetratricopeptide repeat AMS64_04565 PF00209 Sodium:neurotransmitter symporter family AMS64_04575 PF00209 Sodium:neurotransmitter symporter family AMS64_04595 PF07690 Major Facilitator Superfamily AMS64_04605 PF01037 Lrp/AsnC ligand binding domain AMS64_04620 PF00293 NUDIX domain AMS64_04620 PF13344 Haloacid dehalogenase-like hydrolase AMS64_04630 PF01641 SelR domain AMS64_04635 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS64_04635 PF00128 Alpha amylase, catalytic domain AMS64_04640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS64_04640 PF00128 Alpha amylase, catalytic domain AMS64_04640 PF02806 Alpha amylase, C-terminal all-beta domain AMS64_04645 PF02446 4-alpha-glucanotransferase AMS64_04650 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMS64_04650 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMS64_04655 PF01263 Aldose 1-epimerase AMS64_04660 PF02445 Quinolinate synthetase A protein AMS64_04665 PF00672 HAMP domain AMS64_04665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_04670 PF01957 NfeD-like C-terminal, partner-binding AMS64_04675 PF01145 SPFH domain / Band 7 family AMS64_04675 PF16200 C-terminal region of band_7 AMS64_04680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS64_04680 PF14824 Sirohaem biosynthesis protein central AMS64_04680 PF10414 Sirohaem synthase dimerisation region AMS64_04685 PF01507 Phosphoadenosine phosphosulfate reductase family AMS64_04690 PF00009 Elongation factor Tu GTP binding domain AMS64_04695 PF02080 TrkA-C domain AMS64_04695 PF03600 Citrate transporter AMS64_04710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_04710 PF08447 PAS fold AMS64_04730 PF00005 ABC transporter AMS64_04745 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) AMS64_04760 PF00719 Inorganic pyrophosphatase AMS64_04765 PF11849 Domain of unknown function (DUF3369) AMS64_04775 PF00893 Small Multidrug Resistance protein AMS64_04780 PF00893 Small Multidrug Resistance protein AMS64_04785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS64_04790 PF00912 Transglycosylase AMS64_04790 PF00905 Penicillin binding protein transpeptidase domain AMS64_04790 PF14814 Bifunctional transglycosylase second domain AMS64_04795 PF04408 Helicase associated domain (HA2) AMS64_04795 PF00270 DEAD/DEAH box helicase AMS64_04795 PF08482 ATP-dependent helicase C-terminal AMS64_04795 PF00271 Helicase conserved C-terminal domain AMS64_04805 PF03749 Sugar fermentation stimulation protein RE domain AMS64_04805 PF17746 SfsA N-terminal OB domain AMS64_04810 PF01258 Prokaryotic dksA/traR C4-type zinc finger AMS64_04815 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS64_04820 PF12627 Probable RNA and SrmB- binding site of polymerase A AMS64_04820 PF12626 Polymerase A arginine-rich C-terminus AMS64_04820 PF01743 Poly A polymerase head domain AMS64_04825 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AMS64_04830 PF02548 Ketopantoate hydroxymethyltransferase AMS64_04835 PF02569 Pantoate-beta-alanine ligase AMS64_04850 PF13276 HTH-like domain AMS64_04850 PF00665 Integrase core domain AMS64_04850 PF13333 Integrase core domain AMS64_04880 PF01061 ABC-2 type transporter AMS64_04885 PF00005 ABC transporter AMS64_04890 PF00156 Phosphoribosyl transferase domain AMS64_04895 PF00440 Bacterial regulatory proteins, tetR family AMS64_04900 PF02441 Flavoprotein AMS64_04905 PF08245 Mur ligase middle domain AMS64_04905 PF02875 Mur ligase family, glutamate ligase domain AMS64_04905 PF01225 Mur ligase family, catalytic domain AMS64_04910 PF01569 PAP2 superfamily AMS64_04915 PF01370 NAD dependent epimerase/dehydratase family AMS64_04920 PF00970 Oxidoreductase FAD-binding domain AMS64_04920 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_04920 PF00175 Oxidoreductase NAD-binding domain AMS64_04925 PF03063 Prismane/CO dehydrogenase family AMS64_04930 PF00210 Ferritin-like domain AMS64_04935 PF01510 N-acetylmuramoyl-L-alanine amidase AMS64_04940 PF07308 Protein of unknown function (DUF1456) AMS64_04945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_04945 PF00672 HAMP domain AMS64_04945 PF00072 Response regulator receiver domain AMS64_04945 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMS64_04945 PF01627 Hpt domain AMS64_04945 PF00512 His Kinase A (phospho-acceptor) domain AMS64_04950 PF05958 tRNA (Uracil-5-)-methyltransferase AMS64_04950 PF01938 TRAM domain AMS64_04955 PF13291 ACT domain AMS64_04955 PF04607 Region found in RelA / SpoT proteins AMS64_04955 PF02824 TGS domain AMS64_04960 PF03819 MazG nucleotide pyrophosphohydrolase domain AMS64_04965 PF00117 Glutamine amidotransferase class-I AMS64_04965 PF06418 CTP synthase N-terminus AMS64_04970 PF03952 Enolase, N-terminal domain AMS64_04970 PF00113 Enolase, C-terminal TIM barrel domain AMS64_04975 PF00561 alpha/beta hydrolase fold AMS64_05020 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AMS64_05030 PF12848 ABC transporter AMS64_05030 PF00005 ABC transporter AMS64_05050 PF00155 Aminotransferase class I and II AMS64_05050 PF00392 Bacterial regulatory proteins, gntR family AMS64_05060 PF01810 LysE type translocator AMS64_05065 PF01177 Asp/Glu/Hydantoin racemase AMS64_05075 PF04074 YhcH/YjgK/YiaL AMS64_05080 PF00871 Acetokinase family AMS64_05085 PF00924 Mechanosensitive ion channel AMS64_05090 PF03734 L,D-transpeptidase catalytic domain AMS64_05090 PF17969 L,D-transpeptidase C-terminal domain AMS64_05100 PF00474 Sodium:solute symporter family AMS64_05105 PF04977 Septum formation initiator AMS64_05110 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AMS64_05115 PF02542 YgbB family AMS64_05120 PF01142 tRNA pseudouridine synthase D (TruD) AMS64_05125 PF01975 Survival protein SurE AMS64_05135 PF09335 SNARE associated Golgi protein AMS64_05140 PF01551 Peptidase family M23 AMS64_05140 PF01476 LysM domain AMS64_05145 PF04539 Sigma-70 region 3 AMS64_05145 PF04545 Sigma-70, region 4 AMS64_05145 PF04542 Sigma-70 region 2 AMS64_05145 PF00140 Sigma-70 factor, region 1.2 AMS64_05150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMS64_05165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_05165 PF03466 LysR substrate binding domain AMS64_05170 PF04371 Porphyromonas-type peptidyl-arginine deiminase AMS64_05175 PF01425 Amidase AMS64_05195 PF00753 Metallo-beta-lactamase superfamily AMS64_05230 PF00270 DEAD/DEAH box helicase AMS64_05230 PF00271 Helicase conserved C-terminal domain AMS64_05235 PF00990 Diguanylate cyclase, GGDEF domain AMS64_05245 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase AMS64_05250 PF03150 Di-haem cytochrome c peroxidase AMS64_05250 PF00034 Cytochrome c AMS64_05260 PF00445 Ribonuclease T2 family AMS64_05270 PF03060 Nitronate monooxygenase AMS64_05295 PF09297 NADH pyrophosphatase zinc ribbon domain AMS64_05295 PF00293 NUDIX domain AMS64_05295 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AMS64_05310 PF00072 Response regulator receiver domain AMS64_05310 PF00486 Transcriptional regulatory protein, C terminal AMS64_05330 PF08335 GlnD PII-uridylyltransferase AMS64_05330 PF03710 Glutamate-ammonia ligase adenylyltransferase AMS64_05340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_05340 PF00672 HAMP domain AMS64_05345 PF00027 Cyclic nucleotide-binding domain AMS64_05345 PF00520 Ion transport protein AMS64_05350 PF08239 Bacterial SH3 domain AMS64_05355 PF01619 Proline dehydrogenase AMS64_05355 PF00171 Aldehyde dehydrogenase family AMS64_05355 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AMS64_05355 PF14850 DNA-binding domain of Proline dehydrogenase AMS64_05360 PF09297 NADH pyrophosphatase zinc ribbon domain AMS64_05360 PF00293 NUDIX domain AMS64_05365 PF01208 Uroporphyrinogen decarboxylase (URO-D) AMS64_05370 PF00480 ROK family AMS64_05375 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMS64_05375 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMS64_05380 PF00162 Phosphoglycerate kinase AMS64_05385 PF01116 Fructose-bisphosphate aldolase class-II AMS64_05390 PF01266 FAD dependent oxidoreductase AMS64_05410 PF11412 Disulphide bond corrector protein DsbC AMS64_05410 PF02683 Cytochrome C biogenesis protein transmembrane region AMS64_05415 PF03091 CutA1 divalent ion tolerance protein AMS64_05435 PF01571 Aminomethyltransferase folate-binding domain AMS64_05440 PF03937 Flavinator of succinate dehydrogenase AMS64_05450 PF02910 Fumarate reductase flavoprotein C-term AMS64_05450 PF00890 FAD binding domain AMS64_05455 PF04542 Sigma-70 region 2 AMS64_05455 PF08281 Sigma-70, region 4 AMS64_05460 PF03872 Anti sigma-E protein RseA, N-terminal domain AMS64_05460 PF03873 Anti sigma-E protein RseA, C-terminal domain AMS64_05465 PF17188 MucB/RseB C-terminal domain AMS64_05465 PF03888 MucB/RseB N-terminal domain AMS64_05475 PF00009 Elongation factor Tu GTP binding domain AMS64_05475 PF00679 Elongation factor G C-terminus AMS64_05475 PF06421 GTP-binding protein LepA C-terminus AMS64_05475 PF03144 Elongation factor Tu domain 2 AMS64_05480 PF10502 Signal peptidase, peptidase S26 AMS64_05485 PF14622 Ribonuclease-III-like AMS64_05485 PF00035 Double-stranded RNA binding motif AMS64_05490 PF01926 50S ribosome-binding GTPase AMS64_05490 PF07650 KH domain AMS64_05495 PF02565 Recombination protein O C terminal AMS64_05495 PF11967 Recombination protein O N terminal AMS64_05500 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AMS64_05505 PF00459 Inositol monophosphatase family AMS64_05510 PF03795 YCII-related domain AMS64_05515 PF04279 Intracellular septation protein A AMS64_05520 PF00282 Pyridoxal-dependent decarboxylase conserved domain AMS64_05525 PF03006 Haemolysin-III related AMS64_05530 PF02080 TrkA-C domain AMS64_05530 PF06826 Predicted Permease Membrane Region AMS64_05545 PF00990 Diguanylate cyclase, GGDEF domain AMS64_05545 PF00563 EAL domain AMS64_05545 PF03707 Bacterial signalling protein N terminal repeat AMS64_05550 PF06877 Regulator of ribonuclease activity B AMS64_05560 PF01555 DNA methylase AMS64_05585 PF00589 Phage integrase family AMS64_05585 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_05590 PF10127 RNA repair pathway DNA polymerase beta family AMS64_05610 PF00589 Phage integrase family AMS64_05625 PF00561 alpha/beta hydrolase fold AMS64_05630 PF00194 Eukaryotic-type carbonic anhydrase AMS64_05635 PF04227 Indigoidine synthase A like protein AMS64_05640 PF00294 pfkB family carbohydrate kinase AMS64_05655 PF00582 Universal stress protein family AMS64_05665 PF00267 Gram-negative porin AMS64_05670 PF08241 Methyltransferase domain AMS64_05675 PF13545 Crp-like helix-turn-helix domain AMS64_05675 PF00027 Cyclic nucleotide-binding domain AMS64_05680 PF02566 OsmC-like protein AMS64_05695 PF00485 Phosphoribulokinase / Uridine kinase family AMS64_05700 PF06794 Uncharacterised protein family (UPF0270) AMS64_05705 PF00360 Phytochrome region AMS64_05705 PF00563 EAL domain AMS64_05705 PF01590 GAF domain AMS64_05705 PF00990 Diguanylate cyclase, GGDEF domain AMS64_05710 PF00561 alpha/beta hydrolase fold AMS64_05715 PF01584 CheW-like domain AMS64_05715 PF00072 Response regulator receiver domain AMS64_05725 PF09526 Probable metal-binding protein (DUF2387) AMS64_05730 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_05735 PF04102 SlyX AMS64_05745 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_05745 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMS64_05750 PF00072 Response regulator receiver domain AMS64_05750 PF00158 Sigma-54 interaction domain AMS64_05750 PF02954 Bacterial regulatory protein, Fis family AMS64_05770 PF00149 Calcineurin-like phosphoesterase AMS64_05770 PF02872 5'-nucleotidase, C-terminal domain AMS64_05785 PF03796 DnaB-like helicase C terminal domain AMS64_05785 PF00772 DnaB-like helicase N terminal domain AMS64_05790 PF01168 Alanine racemase, N-terminal domain AMS64_05790 PF00842 Alanine racemase, C-terminal domain AMS64_05795 PF01894 Uncharacterised protein family UPF0047 AMS64_05800 PF03575 Peptidase family S51 AMS64_05810 PF00005 ABC transporter AMS64_05815 PF01032 FecCD transport family AMS64_05825 PF06228 Haem utilisation ChuX/HutX AMS64_05830 PF01243 Pyridoxamine 5'-phosphate oxidase AMS64_05850 PF00593 TonB dependent receptor AMS64_05850 PF07715 TonB-dependent Receptor Plug Domain AMS64_05860 PF05638 Type VI secretion system effector, Hcp AMS64_05865 PF04717 Type VI secretion system, phage-baseplate injector AMS64_05890 PF12832 MFS_1 like family AMS64_05900 PF13443 Cro/C1-type HTH DNA-binding domain AMS64_05910 PF00672 HAMP domain AMS64_05910 PF00512 His Kinase A (phospho-acceptor) domain AMS64_05910 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMS64_05910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_05910 PF01627 Hpt domain AMS64_05910 PF00072 Response regulator receiver domain AMS64_05920 PF00704 Glycosyl hydrolases family 18 AMS64_05920 PF08329 Chitinase A, N-terminal domain AMS64_05925 PF08448 PAS fold AMS64_05925 PF00990 Diguanylate cyclase, GGDEF domain AMS64_05930 PF08329 Chitinase A, N-terminal domain AMS64_05930 PF00704 Glycosyl hydrolases family 18 AMS64_05940 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMS64_05940 PF18416 N-acetylglucosamine binding protein domain 2 AMS64_05980 PF00072 Response regulator receiver domain AMS64_05980 PF01584 CheW-like domain AMS64_05985 PF13472 GDSL-like Lipase/Acylhydrolase family AMS64_05990 PF00005 ABC transporter AMS64_06000 PF01370 NAD dependent epimerase/dehydratase family AMS64_06000 PF08338 Domain of unknown function (DUF1731) AMS64_06005 PF12792 CSS motif domain associated with EAL AMS64_06005 PF00563 EAL domain AMS64_06010 PF00155 Aminotransferase class I and II AMS64_06015 PF02390 Putative methyltransferase AMS64_06020 PF04320 Protein with unknown function (DUF469) AMS64_06025 PF04960 Glutaminase AMS64_06030 PF00581 Rhodanese-like domain AMS64_06035 PF06004 Bacterial protein of unknown function (DUF903) AMS64_06045 PF00994 Probable molybdopterin binding domain AMS64_06055 PF06738 Putative threonine/serine exporter AMS64_06060 PF12821 Threonine/Serine exporter, ThrE AMS64_06065 PF00186 Dihydrofolate reductase AMS64_06070 PF01507 Phosphoadenosine phosphosulfate reductase family AMS64_06075 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMS64_06075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMS64_06080 PF00258 Flavodoxin AMS64_06080 PF00667 FAD binding domain AMS64_06080 PF00175 Oxidoreductase NAD-binding domain AMS64_06085 PF02567 Phenazine biosynthesis-like protein AMS64_06090 PF01336 OB-fold nucleic acid binding domain AMS64_06090 PF00152 tRNA synthetases class II (D, K and N) AMS64_06095 PF00472 RF-1 domain AMS64_06095 PF03462 PCRF domain AMS64_06100 PF02743 Cache domain AMS64_06100 PF00672 HAMP domain AMS64_06100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_06105 PF03616 Sodium/glutamate symporter AMS64_06110 PF17763 Glutaminase/Asparaginase C-terminal domain AMS64_06110 PF00710 Asparaginase, N-terminal AMS64_06115 PF07023 Protein of unknown function (DUF1315) AMS64_06120 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AMS64_06120 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AMS64_06140 PF00665 Integrase core domain AMS64_06155 PF00069 Protein kinase domain AMS64_06155 PF03793 PASTA domain AMS64_06160 PF00580 UvrD/REP helicase N-terminal domain AMS64_06160 PF13361 UvrD-like helicase C-terminal domain AMS64_06165 PF04055 Radical SAM superfamily AMS64_06165 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AMS64_06170 PF03099 Biotin/lipoate A/B protein ligase family AMS64_06175 PF04359 Protein of unknown function (DUF493) AMS64_06180 PF07943 Penicillin-binding protein 5, C-terminal domain AMS64_06180 PF00768 D-alanyl-D-alanine carboxypeptidase AMS64_06185 PF05036 Sporulation related domain AMS64_06185 PF03330 Lytic transglycolase AMS64_06190 PF13406 Transglycosylase SLT domain AMS64_06195 PF01098 Cell cycle protein AMS64_06200 PF00905 Penicillin binding protein transpeptidase domain AMS64_06200 PF03717 Penicillin-binding Protein dimerisation domain AMS64_06205 PF02590 Predicted SPOUT methyltransferase AMS64_06215 PF01467 Cytidylyltransferase-like AMS64_06230 PF13603 Leucyl-tRNA synthetase, Domain 2 AMS64_06230 PF00133 tRNA synthetases class I (I, L, M and V) AMS64_06230 PF08264 Anticodon-binding domain of tRNA AMS64_06235 PF07295 Zinc-ribbon containing domain AMS64_06240 PF01523 Putative modulator of DNA gyrase AMS64_06245 PF01523 Putative modulator of DNA gyrase AMS64_06250 PF00258 Flavodoxin AMS64_06255 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_06255 PF00589 Phage integrase family AMS64_06265 PF01741 Large-conductance mechanosensitive channel, MscL AMS64_06275 PF01368 DHH family AMS64_06275 PF17768 RecJ OB domain AMS64_06275 PF02272 DHHA1 domain AMS64_06280 PF13411 MerR HTH family regulatory protein AMS64_06290 PF02508 Rnf-Nqr subunit, membrane protein AMS64_06295 PF00795 Carbon-nitrogen hydrolase AMS64_06300 PF03471 Transporter associated domain AMS64_06300 PF00571 CBS domain AMS64_06305 PF02130 Uncharacterized protein family UPF0054 AMS64_06310 PF02562 PhoH-like protein AMS64_06315 PF00919 Uncharacterized protein family UPF0004 AMS64_06315 PF01938 TRAM domain AMS64_06315 PF04055 Radical SAM superfamily AMS64_06320 PF01494 FAD binding domain AMS64_06325 PF00857 Isochorismatase family AMS64_06330 PF00313 'Cold-shock' DNA-binding domain AMS64_06335 PF00990 Diguanylate cyclase, GGDEF domain AMS64_06335 PF05230 MASE2 domain AMS64_06340 PF03466 LysR substrate binding domain AMS64_06340 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_06350 PF13419 Haloacid dehalogenase-like hydrolase AMS64_06360 PF07694 5TMR of 5TMR-LYT AMS64_06360 PF00990 Diguanylate cyclase, GGDEF domain AMS64_06370 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS64_06370 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS64_06380 PF08207 Elongation factor P (EF-P) KOW-like domain AMS64_06380 PF09285 Elongation factor P, C-terminal AMS64_06380 PF01132 Elongation factor P (EF-P) OB domain AMS64_06390 PF00478 IMP dehydrogenase / GMP reductase domain AMS64_06410 PF08521 Two-component sensor kinase N-terminal AMS64_06410 PF00512 His Kinase A (phospho-acceptor) domain AMS64_06410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_06415 PF00486 Transcriptional regulatory protein, C terminal AMS64_06415 PF00072 Response regulator receiver domain AMS64_06425 PF00106 short chain dehydrogenase AMS64_06435 PF00501 AMP-binding enzyme AMS64_06450 PF01266 FAD dependent oxidoreductase AMS64_06460 PF00440 Bacterial regulatory proteins, tetR family AMS64_06460 PF17932 Tetracyclin repressor-like, C-terminal domain AMS64_06465 PF06224 Winged helix DNA-binding domain AMS64_06475 PF07687 Peptidase dimerisation domain AMS64_06475 PF01546 Peptidase family M20/M25/M40 AMS64_06480 PF07670 Nucleoside recognition AMS64_06485 PF07670 Nucleoside recognition AMS64_06490 PF02313 Fumarate reductase subunit D AMS64_06495 PF02300 Fumarate reductase subunit C AMS64_06500 PF13183 4Fe-4S dicluster domain AMS64_06500 PF13085 2Fe-2S iron-sulfur cluster binding domain AMS64_06505 PF02910 Fumarate reductase flavoprotein C-term AMS64_06505 PF00890 FAD binding domain AMS64_06510 PF00672 HAMP domain AMS64_06510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_06510 PF02743 Cache domain AMS64_06515 PF03009 Glycerophosphoryl diester phosphodiesterase family AMS64_06520 PF00924 Mechanosensitive ion channel AMS64_06520 PF12795 Mechanosensitive ion channel porin domain AMS64_06520 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMS64_06530 PF01476 LysM domain AMS64_06530 PF08525 Opacity-associated protein A N-terminal motif AMS64_06530 PF01551 Peptidase family M23 AMS64_06540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_06540 PF03466 LysR substrate binding domain AMS64_06555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_06555 PF00672 HAMP domain AMS64_06560 PF03466 LysR substrate binding domain AMS64_06560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_06565 PF17092 Penicillin-binding protein OB-like domain AMS64_06565 PF00912 Transglycosylase AMS64_06565 PF00905 Penicillin binding protein transpeptidase domain AMS64_06590 PF03958 Bacterial type II/III secretion system short domain AMS64_06590 PF00263 Bacterial type II and III secretion system protein AMS64_06590 PF11741 AMIN domain AMS64_06590 PF07660 Secretin and TonB N terminus short domain AMS64_06595 PF01202 Shikimate kinase AMS64_06600 PF01761 3-dehydroquinate synthase AMS64_06610 PF02086 D12 class N6 adenine-specific DNA methyltransferase AMS64_06615 PF00834 Ribulose-phosphate 3 epimerase family AMS64_06620 PF13419 Haloacid dehalogenase-like hydrolase AMS64_06625 PF00579 tRNA synthetases class I (W and Y) AMS64_06635 PF00117 Glutamine amidotransferase class-I AMS64_06640 PF00202 Aminotransferase class-III AMS64_06645 PF04958 Arginine N-succinyltransferase beta subunit AMS64_06650 PF00171 Aldehyde dehydrogenase family AMS64_06665 PF13419 Haloacid dehalogenase-like hydrolase AMS64_06670 PF07690 Major Facilitator Superfamily AMS64_06675 PF00128 Alpha amylase, catalytic domain AMS64_06675 PF16657 Maltogenic Amylase, C-terminal domain AMS64_06685 PF00012 Hsp70 protein AMS64_06700 PF07859 alpha/beta hydrolase fold AMS64_06715 PF01048 Phosphorylase superfamily AMS64_06720 PF04973 Nicotinamide mononucleotide transporter AMS64_06725 PF02080 TrkA-C domain AMS64_06725 PF03600 Citrate transporter AMS64_06780 PF01926 50S ribosome-binding GTPase AMS64_06780 PF06071 Protein of unknown function (DUF933) AMS64_06785 PF01195 Peptidyl-tRNA hydrolase AMS64_06790 PF00149 Calcineurin-like phosphoesterase AMS64_06790 PF02872 5'-nucleotidase, C-terminal domain AMS64_06795 PF14572 Phosphoribosyl synthetase-associated domain AMS64_06795 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AMS64_06805 PF08544 GHMP kinases C terminal AMS64_06805 PF00288 GHMP kinases N terminal domain AMS64_06810 PF03550 Outer membrane lipoprotein LolB AMS64_06815 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AMS64_06815 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AMS64_06815 PF01488 Shikimate / quinate 5-dehydrogenase AMS64_06820 PF03462 PCRF domain AMS64_06820 PF00472 RF-1 domain AMS64_06825 PF17827 PrmC N-terminal domain AMS64_06825 PF13847 Methyltransferase domain AMS64_06835 PF13369 Transglutaminase-like superfamily AMS64_06840 PF00793 DAHP synthetase I family AMS64_06845 PF00375 Sodium:dicarboxylate symporter family AMS64_06850 PF01228 Glycine radical AMS64_06860 PF03167 Uracil DNA glycosylase superfamily AMS64_06870 PF01204 Trehalase AMS64_06880 PF01161 Phosphatidylethanolamine-binding protein AMS64_06900 PF00155 Aminotransferase class I and II AMS64_06905 PF07690 Major Facilitator Superfamily AMS64_06910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_06910 PF03466 LysR substrate binding domain AMS64_06915 PF00106 short chain dehydrogenase AMS64_06920 PF01343 Peptidase family S49 AMS64_06920 PF08496 Peptidase family S49 N-terminal AMS64_06925 PF07690 Major Facilitator Superfamily AMS64_06930 PF00990 Diguanylate cyclase, GGDEF domain AMS64_06935 PF02635 DsrE/DsrF-like family AMS64_06945 PF12838 4Fe-4S dicluster domain AMS64_06975 PF04996 Succinylarginine dihydrolase AMS64_06980 PF01396 Topoisomerase DNA binding C4 zinc finger AMS64_06980 PF01751 Toprim domain AMS64_06980 PF01131 DNA topoisomerase AMS64_06980 PF08272 Topoisomerase I zinc-ribbon-like AMS64_06990 PF08447 PAS fold AMS64_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_06995 PF02838 Glycosyl hydrolase family 20, domain 2 AMS64_06995 PF00728 Glycosyl hydrolase family 20, catalytic domain AMS64_07000 PF01869 BadF/BadG/BcrA/BcrD ATPase family AMS64_07010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_07010 PF00005 ABC transporter AMS64_07015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_07015 PF00005 ABC transporter AMS64_07020 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_07020 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_07025 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_07030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_07035 PF00512 His Kinase A (phospho-acceptor) domain AMS64_07035 PF09308 LuxQ, periplasmic AMS64_07035 PF00072 Response regulator receiver domain AMS64_07035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_07055 PF10725 Protein of unknown function (DUF2517) AMS64_07065 PF05114 Protein of unknown function (DUF692) AMS64_07085 PF13426 PAS domain AMS64_07085 PF08447 PAS fold AMS64_07085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_07100 PF04632 Fusaric acid resistance protein family AMS64_07105 PF03454 MoeA C-terminal region (domain IV) AMS64_07105 PF00994 Probable molybdopterin binding domain AMS64_07105 PF03453 MoeA N-terminal region (domain I and II) AMS64_07110 PF12804 MobA-like NTP transferase domain AMS64_07115 PF00005 ABC transporter AMS64_07120 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_07125 PF12849 PBP superfamily domain AMS64_07130 PF00072 Response regulator receiver domain AMS64_07130 PF02954 Bacterial regulatory protein, Fis family AMS64_07130 PF00158 Sigma-54 interaction domain AMS64_07135 PF00989 PAS fold AMS64_07135 PF00512 His Kinase A (phospho-acceptor) domain AMS64_07135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_07145 PF02634 FdhD/NarQ family AMS64_07175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS64_07175 PF12838 4Fe-4S dicluster domain AMS64_07175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_07175 PF00384 Molybdopterin oxidoreductase AMS64_07175 PF01568 Molydopterin dinucleotide binding domain AMS64_07175 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS64_07175 PF01568 Molydopterin dinucleotide binding domain AMS64_07175 PF12838 4Fe-4S dicluster domain AMS64_07175 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_07175 PF00384 Molybdopterin oxidoreductase AMS64_07180 PF13247 4Fe-4S dicluster domain AMS64_07200 PF03949 Malic enzyme, NAD binding domain AMS64_07200 PF00390 Malic enzyme, N-terminal domain AMS64_07205 PF16998 17 kDa outer membrane surface antigen AMS64_07205 PF05433 Glycine zipper 2TM domain AMS64_07220 PF00860 Permease family AMS64_07225 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_07230 PF00672 HAMP domain AMS64_07230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_07255 PF02685 Glucokinase AMS64_07260 PF01380 SIS domain AMS64_07260 PF01418 Helix-turn-helix domain, rpiR family AMS64_07265 PF02887 Pyruvate kinase, alpha/beta domain AMS64_07265 PF00224 Pyruvate kinase, barrel domain AMS64_07275 PF07969 Amidohydrolase family AMS64_07285 PF02049 Flagellar hook-basal body complex protein FliE AMS64_07290 PF01514 Secretory protein of YscJ/FliF family AMS64_07290 PF08345 Flagellar M-ring protein C-terminal AMS64_07295 PF14841 FliG middle domain AMS64_07295 PF01706 FliG C-terminal domain AMS64_07295 PF14842 FliG N-terminal domain AMS64_07305 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_07305 PF18269 T3SS EscN ATPase C-terminal domain AMS64_07325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS64_07325 PF02154 Flagellar motor switch protein FliM AMS64_07330 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS64_07335 PF04347 Flagellar biosynthesis protein, FliO AMS64_07340 PF00813 FliP family AMS64_07345 PF01313 Bacterial export proteins, family 3 AMS64_07350 PF01311 Bacterial export proteins, family 1 AMS64_07355 PF01312 FlhB HrpN YscU SpaS Family AMS64_07360 PF00771 FHIPEP family AMS64_07365 PF00448 SRP54-type protein, GTPase domain AMS64_07370 PF10609 NUBPL iron-transfer P-loop NTPase AMS64_07375 PF04539 Sigma-70 region 3 AMS64_07375 PF04545 Sigma-70, region 4 AMS64_07375 PF04542 Sigma-70 region 2 AMS64_07380 PF00072 Response regulator receiver domain AMS64_07385 PF04344 Chemotaxis phosphatase, CheZ AMS64_07390 PF01627 Hpt domain AMS64_07390 PF01584 CheW-like domain AMS64_07390 PF02895 Signal transducing histidine kinase, homodimeric domain AMS64_07390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_07390 PF07194 P2 response regulator binding domain AMS64_07395 PF00072 Response regulator receiver domain AMS64_07395 PF01339 CheB methylesterase AMS64_07400 PF01618 MotA/TolQ/ExbB proton channel family AMS64_07405 PF00691 OmpA family AMS64_07405 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMS64_07410 PF13614 AAA domain AMS64_07420 PF01584 CheW-like domain AMS64_07430 PF00005 ABC transporter AMS64_07435 PF03379 CcmB protein AMS64_07440 PF01578 Cytochrome C assembly protein AMS64_07445 PF04995 Heme exporter protein D (CcmD) AMS64_07450 PF03100 CcmE AMS64_07455 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMS64_07455 PF01578 Cytochrome C assembly protein AMS64_07460 PF08534 Redoxin AMS64_07465 PF03918 Cytochrome C biogenesis protein AMS64_07475 PF04333 MlaA lipoprotein AMS64_07480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AMS64_07480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AMS64_07485 PF00462 Glutaredoxin AMS64_07490 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_07495 PF03222 Tryptophan/tyrosine permease family AMS64_07500 PF00871 Acetokinase family AMS64_07505 PF01228 Glycine radical AMS64_07505 PF02901 Pyruvate formate lyase-like AMS64_07510 PF01042 Endoribonuclease L-PSP AMS64_07515 PF01189 16S rRNA methyltransferase RsmB/F AMS64_07515 PF01029 NusB family AMS64_07550 PF01243 Pyridoxamine 5'-phosphate oxidase AMS64_07550 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AMS64_07555 PF13417 Glutathione S-transferase, N-terminal domain AMS64_07555 PF00043 Glutathione S-transferase, C-terminal domain AMS64_07575 PF08007 Cupin superfamily protein AMS64_07580 PF08328 Adenylosuccinate lyase C-terminal AMS64_07580 PF00206 Lyase AMS64_07585 PF04356 Protein of unknown function (DUF489) AMS64_07600 PF00849 RNA pseudouridylate synthase AMS64_07610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMS64_07615 PF07690 Major Facilitator Superfamily AMS64_07620 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMS64_07620 PF02378 Phosphotransferase system, EIIC AMS64_07620 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_07640 PF00356 Bacterial regulatory proteins, lacI family AMS64_07640 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS64_07645 PF00367 phosphotransferase system, EIIB AMS64_07645 PF02378 Phosphotransferase system, EIIC AMS64_07650 PF00155 Aminotransferase class I and II AMS64_07670 PF03496 ADP-ribosyltransferase exoenzyme AMS64_07675 PF01312 FlhB HrpN YscU SpaS Family AMS64_07680 PF01311 Bacterial export proteins, family 1 AMS64_07685 PF01313 Bacterial export proteins, family 3 AMS64_07690 PF00813 FliP family AMS64_07695 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS64_07700 PF02120 Flagellar hook-length control protein FliK AMS64_07710 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS64_07710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_07710 PF18269 T3SS EscN ATPase C-terminal domain AMS64_07715 PF07201 HrpJ-like domain AMS64_07720 PF09059 TyeA AMS64_07730 PF09474 Type III secretion system YscX (type_III_YscX) AMS64_07740 PF00771 FHIPEP family AMS64_07745 PF09621 Type III secretion system regulator (LcrR) AMS64_07750 PF07216 LcrG protein AMS64_07755 PF04792 V antigen (LcrV) protein AMS64_07760 PF07720 Tetratricopeptide repeat AMS64_07765 PF04888 Secretion system effector C (SseC) like family AMS64_07770 PF05844 YopD protein AMS64_07775 PF05932 Tir chaperone protein (CesT) family AMS64_07790 PF12833 Helix-turn-helix domain AMS64_07800 PF05932 Tir chaperone protein (CesT) family AMS64_07810 PF16693 Inner membrane component of T3SS, periplasmic domain AMS64_07810 PF16697 Inner membrane component of T3SS, cytoplasmic domain AMS64_07820 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AMS64_07825 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AMS64_07830 PF09025 YopR, type III needle-polymerisation regulator AMS64_07835 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AMS64_07840 PF01514 Secretory protein of YscJ/FliF family AMS64_07845 PF06578 YOP proteins translocation protein K (YscK) AMS64_07855 PF02371 Transposase IS116/IS110/IS902 family AMS64_07855 PF01548 Transposase AMS64_07910 PF01527 Transposase AMS64_07920 PF01548 Transposase AMS64_07920 PF02371 Transposase IS116/IS110/IS902 family AMS64_07925 PF00665 Integrase core domain AMS64_07925 PF13333 Integrase core domain AMS64_07925 PF13276 HTH-like domain AMS64_07930 PF00589 Phage integrase family AMS64_07930 PF13356 Arm DNA-binding domain AMS64_07935 PF02132 RecR protein AMS64_07935 PF13662 Toprim domain AMS64_07940 PF00183 Hsp90 protein AMS64_07940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_07945 PF00005 ABC transporter AMS64_07950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_07950 PF00005 ABC transporter AMS64_07955 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_07955 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_07960 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_07965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_07970 PF02954 Bacterial regulatory protein, Fis family AMS64_07970 PF00158 Sigma-54 interaction domain AMS64_07975 PF04012 PspA/IM30 family AMS64_07980 PF06667 Phage shock protein B AMS64_07990 PF04317 YcjX-like family, DUF463 AMS64_07995 PF05128 Domain of unknown function (DUF697) AMS64_08000 PF00351 Biopterin-dependent aromatic amino acid hydroxylase AMS64_08005 PF01329 Pterin 4 alpha carbinolamine dehydratase AMS64_08010 PF18024 Helix-turn-helix domain AMS64_08010 PF00158 Sigma-54 interaction domain AMS64_08020 PF00990 Diguanylate cyclase, GGDEF domain AMS64_08020 PF17152 Periplasmic sensor domain AMS64_08025 PF00691 OmpA family AMS64_08030 PF03741 Integral membrane protein TerC family AMS64_08040 PF08891 YfcL protein AMS64_08045 PF00501 AMP-binding enzyme AMS64_08050 PF01053 Cys/Met metabolism PLP-dependent enzyme AMS64_08065 PF13460 NAD(P)H-binding AMS64_08070 PF03466 LysR substrate binding domain AMS64_08070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_08075 PF00106 short chain dehydrogenase AMS64_08080 PF12833 Helix-turn-helix domain AMS64_08085 PF00593 TonB dependent receptor AMS64_08085 PF07715 TonB-dependent Receptor Plug Domain AMS64_08095 PF03466 LysR substrate binding domain AMS64_08095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_08100 PF08267 Cobalamin-independent synthase, N-terminal domain AMS64_08100 PF01717 Cobalamin-independent synthase, Catalytic domain AMS64_08110 PF03466 LysR substrate binding domain AMS64_08110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_08115 PF00232 Glycosyl hydrolase family 1 AMS64_08120 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding AMS64_08120 PF18381 YcaO cyclodehydratase C-terminal domain AMS64_08125 PF01226 Formate/nitrite transporter AMS64_08130 PF01228 Glycine radical AMS64_08130 PF02901 Pyruvate formate lyase-like AMS64_08140 PF03692 Putative zinc- or iron-chelating domain AMS64_08155 PF00343 Carbohydrate phosphorylase AMS64_08160 PF00939 Sodium:sulfate symporter transmembrane region AMS64_08165 PF00085 Thioredoxin AMS64_08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_08170 PF00672 HAMP domain AMS64_08170 PF01627 Hpt domain AMS64_08170 PF00072 Response regulator receiver domain AMS64_08170 PF00512 His Kinase A (phospho-acceptor) domain AMS64_08170 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) AMS64_08175 PF00005 ABC transporter AMS64_08175 PF00664 ABC transporter transmembrane region AMS64_08180 PF00005 ABC transporter AMS64_08180 PF00664 ABC transporter transmembrane region AMS64_08205 PF08543 Phosphomethylpyrimidine kinase AMS64_08210 PF00465 Iron-containing alcohol dehydrogenase AMS64_08220 PF01928 CYTH domain AMS64_08230 PF13673 Acetyltransferase (GNAT) domain AMS64_08240 PF00285 Citrate synthase, C-terminal domain AMS64_08245 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMS64_08250 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AMS64_08255 PF00890 FAD binding domain AMS64_08255 PF02910 Fumarate reductase flavoprotein C-term AMS64_08260 PF13085 2Fe-2S iron-sulfur cluster binding domain AMS64_08265 PF00676 Dehydrogenase E1 component AMS64_08265 PF02779 Transketolase, pyrimidine binding domain AMS64_08265 PF16870 2-oxoglutarate dehydrogenase C-terminal AMS64_08265 PF16078 2-oxoglutarate dehydrogenase N-terminus AMS64_08270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMS64_08270 PF00364 Biotin-requiring enzyme AMS64_08270 PF02817 e3 binding domain AMS64_08275 PF00549 CoA-ligase AMS64_08275 PF08442 ATP-grasp domain AMS64_08280 PF02629 CoA binding domain AMS64_08280 PF00549 CoA-ligase AMS64_08285 PF01266 FAD dependent oxidoreductase AMS64_08290 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_08295 PF00005 ABC transporter AMS64_08305 PF00392 Bacterial regulatory proteins, gntR family AMS64_08305 PF07702 UTRA domain AMS64_08310 PF00266 Aminotransferase class-V AMS64_08335 PF03918 Cytochrome C biogenesis protein AMS64_08340 PF08534 Redoxin AMS64_08345 PF01578 Cytochrome C assembly protein AMS64_08345 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal AMS64_08350 PF03916 Polysulphide reductase, NrfD AMS64_08355 PF13247 4Fe-4S dicluster domain AMS64_08355 PF00037 4Fe-4S binding domain AMS64_08360 PF13435 Cytochrome c554 and c-prime AMS64_08360 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) AMS64_08365 PF02335 Cytochrome c552 AMS64_08375 PF02754 Cysteine-rich domain AMS64_08375 PF13183 4Fe-4S dicluster domain AMS64_08380 PF00890 FAD binding domain AMS64_08385 PF04324 BFD-like [2Fe-2S] binding domain AMS64_08385 PF01266 FAD dependent oxidoreductase AMS64_08390 PF02810 SEC-C motif AMS64_08395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_08395 PF17200 Single Cache domain 2 AMS64_08395 PF00672 HAMP domain AMS64_08400 PF00480 ROK family AMS64_08400 PF01047 MarR family AMS64_08410 PF01925 Sulfite exporter TauE/SafE AMS64_08415 PF03466 LysR substrate binding domain AMS64_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_08425 PF12833 Helix-turn-helix domain AMS64_08425 PF14525 AraC-binding-like domain AMS64_08430 PF11398 Protein of unknown function (DUF2813) AMS64_08440 PF00128 Alpha amylase, catalytic domain AMS64_08440 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS64_08465 PF00883 Cytosol aminopeptidase family, catalytic domain AMS64_08465 PF02789 Cytosol aminopeptidase family, N-terminal domain AMS64_08470 PF13419 Haloacid dehalogenase-like hydrolase AMS64_08485 PF01207 Dihydrouridine synthase (Dus) AMS64_08490 PF04304 Protein of unknown function (DUF454) AMS64_08495 PF00156 Phosphoribosyl transferase domain AMS64_08500 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding AMS64_08500 PF12169 DNA polymerase III subunits gamma and tau domain III AMS64_08500 PF12170 DNA polymerase III tau subunit V interacting with alpha AMS64_08505 PF02575 YbaB/EbfC DNA-binding family AMS64_08510 PF01261 Xylose isomerase-like TIM barrel AMS64_08515 PF03466 LysR substrate binding domain AMS64_08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_08525 PF03279 Bacterial lipid A biosynthesis acyltransferase AMS64_08530 PF03279 Bacterial lipid A biosynthesis acyltransferase AMS64_08545 PF00990 Diguanylate cyclase, GGDEF domain AMS64_08555 PF03104 DNA polymerase family B, exonuclease domain AMS64_08555 PF00136 DNA polymerase family B AMS64_08570 PF01863 Protein of unknown function DUF45 AMS64_08585 PF03606 C4-dicarboxylate anaerobic carrier AMS64_08600 PF01266 FAD dependent oxidoreductase AMS64_08600 PF05430 S-adenosyl-L-methionine-dependent methyltransferase AMS64_08605 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS64_08605 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS64_08610 PF06826 Predicted Permease Membrane Region AMS64_08610 PF02080 TrkA-C domain AMS64_08620 PF17757 UvrB interaction domain AMS64_08620 PF12344 Ultra-violet resistance protein B AMS64_08620 PF02151 UvrB/uvrC motif AMS64_08620 PF00271 Helicase conserved C-terminal domain AMS64_08620 PF04851 Type III restriction enzyme, res subunit AMS64_08630 PF09335 SNARE associated Golgi protein AMS64_08635 PF02600 Disulfide bond formation protein DsbB AMS64_08640 PF06450 Bacterial Na+/H+ antiporter B (NhaB) AMS64_08645 PF00392 Bacterial regulatory proteins, gntR family AMS64_08645 PF07840 FadR C-terminal domain AMS64_08650 PF07152 YaeQ protein AMS64_08665 PF01548 Transposase AMS64_08665 PF02371 Transposase IS116/IS110/IS902 family AMS64_08735 PF01554 MatE AMS64_08740 PF06786 Uncharacterised protein family (UPF0253) AMS64_08750 PF00677 Lumazine binding domain AMS64_08760 PF13419 Haloacid dehalogenase-like hydrolase AMS64_08765 PF02222 ATP-grasp domain AMS64_08765 PF01370 NAD dependent epimerase/dehydratase family AMS64_08770 PF00892 EamA-like transporter family AMS64_08775 PF02525 Flavodoxin-like fold AMS64_08800 PF17783 CvfB-like winged helix domain AMS64_08800 PF13509 S1 domain AMS64_08810 PF04269 Protein of unknown function, DUF440 AMS64_08815 PF00912 Transglycosylase AMS64_08820 PF04269 Protein of unknown function, DUF440 AMS64_08825 PF03776 Septum formation topological specificity factor MinE AMS64_08830 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AMS64_08835 PF03775 Septum formation inhibitor MinC, C-terminal domain AMS64_08835 PF05209 Septum formation inhibitor MinC, N-terminal domain AMS64_08840 PF05166 YcgL domain AMS64_08845 PF03313 Serine dehydratase alpha chain AMS64_08845 PF03315 Serine dehydratase beta chain AMS64_08850 PF03315 Serine dehydratase beta chain AMS64_08850 PF03313 Serine dehydratase alpha chain AMS64_08855 PF06865 Pyrimidine/purine nucleoside phosphorylase AMS64_08860 PF00375 Sodium:dicarboxylate symporter family AMS64_08865 PF00365 Phosphofructokinase AMS64_08870 PF00121 Triosephosphate isomerase AMS64_08875 PF02698 DUF218 domain AMS64_08885 PF17193 MukF C-terminal domain AMS64_08885 PF17192 MukF middle domain AMS64_08885 PF03882 MukF winged-helix domain AMS64_08890 PF04288 MukE-like family AMS64_08895 PF16330 MukB hinge domain AMS64_08895 PF04310 MukB N-terminal AMS64_08900 PF03330 Lytic transglycolase AMS64_08935 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS64_08935 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS64_08940 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_08945 PF07687 Peptidase dimerisation domain AMS64_08945 PF01546 Peptidase family M20/M25/M40 AMS64_08950 PF01979 Amidohydrolase family AMS64_08955 PF00696 Amino acid kinase family AMS64_08960 PF00892 EamA-like transporter family AMS64_08965 PF01699 Sodium/calcium exchanger protein AMS64_08970 PF13478 XdhC Rossmann domain AMS64_08970 PF02625 XdhC and CoxI family AMS64_08980 PF12804 MobA-like NTP transferase domain AMS64_08985 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMS64_08985 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_08990 PF01979 Amidohydrolase family AMS64_08995 PF00941 FAD binding domain in molybdopterin dehydrogenase AMS64_09000 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMS64_09000 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMS64_09000 PF01799 [2Fe-2S] binding domain AMS64_09005 PF00860 Permease family AMS64_09010 PF01979 Amidohydrolase family AMS64_09015 PF00860 Permease family AMS64_09025 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AMS64_09025 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AMS64_09030 PF00941 FAD binding domain in molybdopterin dehydrogenase AMS64_09030 PF03450 CO dehydrogenase flavoprotein C-terminal domain AMS64_09035 PF01799 [2Fe-2S] binding domain AMS64_09035 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_09040 PF05433 Glycine zipper 2TM domain AMS64_09050 PF03606 C4-dicarboxylate anaerobic carrier AMS64_09055 PF00501 AMP-binding enzyme AMS64_09055 PF13193 AMP-binding enzyme C-terminal domain AMS64_09060 PF07694 5TMR of 5TMR-LYT AMS64_09060 PF00990 Diguanylate cyclase, GGDEF domain AMS64_09075 PF01502 Phosphoribosyl-AMP cyclohydrolase AMS64_09075 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AMS64_09080 PF00977 Histidine biosynthesis protein AMS64_09085 PF00977 Histidine biosynthesis protein AMS64_09090 PF00117 Glutamine amidotransferase class-I AMS64_09095 PF08645 Polynucleotide kinase 3 phosphatase AMS64_09095 PF00475 Imidazoleglycerol-phosphate dehydratase AMS64_09100 PF00155 Aminotransferase class I and II AMS64_09105 PF00815 Histidinol dehydrogenase AMS64_09110 PF08029 HisG, C-terminal domain AMS64_09110 PF01634 ATP phosphoribosyltransferase AMS64_09120 PF13307 Helicase C-terminal domain AMS64_09120 PF04851 Type III restriction enzyme, res subunit AMS64_09125 PF00814 Glycoprotease family AMS64_09135 PF12697 Alpha/beta hydrolase family AMS64_09140 PF13193 AMP-binding enzyme C-terminal domain AMS64_09140 PF00501 AMP-binding enzyme AMS64_09145 PF00570 HRDC domain AMS64_09145 PF01612 3'-5' exonuclease AMS64_09150 PF00753 Metallo-beta-lactamase superfamily AMS64_09160 PF00586 AIR synthase related protein, N-terminal domain AMS64_09160 PF02769 AIR synthase related protein, C-terminal domain AMS64_09170 PF17785 PUA-like domain AMS64_09170 PF10672 S-adenosylmethionine-dependent methyltransferase AMS64_09175 PF12729 Four helix bundle sensory module for signal transduction AMS64_09175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_09175 PF00672 HAMP domain AMS64_09180 PF00708 Acylphosphatase AMS64_09190 PF09334 tRNA synthetases class I (M) AMS64_09190 PF01588 Putative tRNA binding domain AMS64_09190 PF08264 Anticodon-binding domain of tRNA AMS64_09195 PF10609 NUBPL iron-transfer P-loop NTPase AMS64_09200 PF00485 Phosphoribulokinase / Uridine kinase family AMS64_09205 PF00692 dUTPase AMS64_09210 PF01384 Phosphate transporter family AMS64_09215 PF06560 Glucose-6-phosphate isomerase (GPI) AMS64_09220 PF00356 Bacterial regulatory proteins, lacI family AMS64_09220 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS64_09235 PF03830 PTS system sorbose subfamily IIB component AMS64_09235 PF03610 PTS system fructose IIA component AMS64_09240 PF03609 PTS system sorbose-specific iic component AMS64_09245 PF03613 PTS system mannose/fructose/sorbose family IID component AMS64_09255 PF06945 Protein of unknown function (DUF1289) AMS64_09260 PF03562 MltA specific insert domain AMS64_09260 PF06725 3D domain AMS64_09265 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_09270 PF00268 Ribonucleotide reductase, small chain AMS64_09275 PF00317 Ribonucleotide reductase, all-alpha domain AMS64_09275 PF02867 Ribonucleotide reductase, barrel domain AMS64_09275 PF03477 ATP cone domain AMS64_09280 PF13419 Haloacid dehalogenase-like hydrolase AMS64_09290 PF00521 DNA gyrase/topoisomerase IV, subunit A AMS64_09290 PF03989 DNA gyrase C-terminal domain, beta-propeller AMS64_09295 PF00128 Alpha amylase, catalytic domain AMS64_09310 PF03129 Anticodon binding domain AMS64_09310 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS64_09310 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS64_09310 PF02824 TGS domain AMS64_09315 PF00707 Translation initiation factor IF-3, C-terminal domain AMS64_09315 PF05198 Translation initiation factor IF-3, N-terminal domain AMS64_09320 PF01632 Ribosomal protein L35 AMS64_09325 PF00453 Ribosomal protein L20 AMS64_09330 PF01409 tRNA synthetases class II core domain (F) AMS64_09330 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AMS64_09335 PF03484 tRNA synthetase B5 domain AMS64_09335 PF03147 Ferredoxin-fold anticodon binding domain AMS64_09335 PF01588 Putative tRNA binding domain AMS64_09335 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AMS64_09335 PF03483 B3/4 domain AMS64_09340 PF00216 Bacterial DNA-binding protein AMS64_09345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_09345 PF09456 RcsC Alpha-Beta-Loop (ABL) AMS64_09345 PF00072 Response regulator receiver domain AMS64_09345 PF00512 His Kinase A (phospho-acceptor) domain AMS64_09360 PF02146 Sir2 family AMS64_09370 PF00990 Diguanylate cyclase, GGDEF domain AMS64_09370 PF00563 EAL domain AMS64_09370 PF03707 Bacterial signalling protein N terminal repeat AMS64_09375 PF00356 Bacterial regulatory proteins, lacI family AMS64_09380 PF00294 pfkB family carbohydrate kinase AMS64_09385 PF13407 Periplasmic binding protein domain AMS64_09390 PF02653 Branched-chain amino acid transport system / permease component AMS64_09395 PF00005 ABC transporter AMS64_09400 PF05025 RbsD / FucU transport protein family AMS64_09405 PF02798 Glutathione S-transferase, N-terminal domain AMS64_09405 PF00043 Glutathione S-transferase, C-terminal domain AMS64_09415 PF13416 Bacterial extracellular solute-binding protein AMS64_09420 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_09425 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_09430 PF00005 ABC transporter AMS64_09430 PF08402 TOBE domain AMS64_09445 PF01171 PP-loop family AMS64_09450 PF00582 Universal stress protein family AMS64_09455 PF13545 Crp-like helix-turn-helix domain AMS64_09455 PF00027 Cyclic nucleotide-binding domain AMS64_09470 PF00403 Heavy-metal-associated domain AMS64_09480 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS64_09480 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AMS64_09495 PF00115 Cytochrome C and Quinol oxidase polypeptide I AMS64_09505 PF13185 GAF domain AMS64_09510 PF17516 ProQ C-terminal domain AMS64_09510 PF04352 ProQ/FINO family AMS64_09515 PF17804 Tail specific protease N-terminal domain AMS64_09515 PF11818 C-terminal domain of tail specific protease (DUF3340) AMS64_09515 PF00595 PDZ domain AMS64_09515 PF03572 Peptidase family S41 AMS64_09520 PF01433 Peptidase family M1 domain AMS64_09520 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AMS64_09520 PF11940 Domain of unknown function (DUF3458) Ig-like fold AMS64_09530 PF05088 Bacterial NAD-glutamate dehydrogenase AMS64_09535 PF01180 Dihydroorotate dehydrogenase AMS64_09540 PF07126 Cell-division protein ZapC AMS64_09545 PF01197 Ribosomal protein L31 AMS64_09550 PF00444 Ribosomal protein L36 AMS64_09555 PF02926 THUMP domain AMS64_09555 PF01170 Putative RNA methylase family UPF0020 AMS64_09555 PF10672 S-adenosylmethionine-dependent methyltransferase AMS64_09565 PF00005 ABC transporter AMS64_09565 PF12848 ABC transporter AMS64_09565 PF16326 ABC transporter C-terminal domain AMS64_09570 PF07977 FabA-like domain AMS64_09575 PF05362 Lon protease (S16) C-terminal proteolytic domain AMS64_09575 PF13654 AAA domain AMS64_09655 PF07130 YebG protein AMS64_09660 PF01674 Lipase (class 2) AMS64_09665 PF00106 short chain dehydrogenase AMS64_09690 PF06974 Protein of unknown function (DUF1298) AMS64_09690 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain AMS64_09705 PF03972 MmgE/PrpD family AMS64_09710 PF00285 Citrate synthase, C-terminal domain AMS64_09725 PF04403 Paraquat-inducible protein A AMS64_09730 PF02470 MlaD protein AMS64_09735 PF01189 16S rRNA methyltransferase RsmB/F AMS64_09735 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF AMS64_09735 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF AMS64_09755 PF01381 Helix-turn-helix AMS64_09770 PF00589 Phage integrase family AMS64_09775 PF01026 TatD related DNase AMS64_09780 PF09115 DNA polymerase III, delta subunit, C terminal AMS64_09785 PF02223 Thymidylate kinase AMS64_09790 PF02618 YceG-like family AMS64_09795 PF01063 Amino-transferase class IV AMS64_09800 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS64_09800 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS64_09805 PF00550 Phosphopantetheine attachment site AMS64_09815 PF00698 Acyl transferase domain AMS64_09820 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMS64_09820 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMS64_09825 PF02504 Fatty acid synthesis protein AMS64_09830 PF01783 Ribosomal L32p protein family AMS64_09835 PF02620 Large ribosomal RNA subunit accumulation protein YceD AMS64_09840 PF02545 Maf-like protein AMS64_09845 PF13419 Haloacid dehalogenase-like hydrolase AMS64_09850 PF01479 S4 domain AMS64_09850 PF00849 RNA pseudouridylate synthase AMS64_09855 PF00575 S1 RNA binding domain AMS64_09855 PF10150 Ribonuclease E/G family AMS64_09855 PF12111 Polyribonucleotide phosphorylase C terminal AMS64_09860 PF02378 Phosphotransferase system, EIIC AMS64_09860 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMS64_09865 PF00294 pfkB family carbohydrate kinase AMS64_09870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_09870 PF00381 PTS HPr component phosphorylation site AMS64_09875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS64_09875 PF00356 Bacterial regulatory proteins, lacI family AMS64_09880 PF03222 Tryptophan/tyrosine permease family AMS64_09890 PF01124 MAPEG family AMS64_09900 PF00270 DEAD/DEAH box helicase AMS64_09900 PF00271 Helicase conserved C-terminal domain AMS64_09910 PF01264 Chorismate synthase AMS64_09915 PF05175 Methyltransferase small domain AMS64_09920 PF01713 Smr domain AMS64_09925 PF00990 Diguanylate cyclase, GGDEF domain AMS64_09925 PF08448 PAS fold AMS64_09930 PF00300 Histidine phosphatase superfamily (branch 1) AMS64_09945 PF08274 PhnA Zinc-Ribbon AMS64_09945 PF03831 PhnA domain AMS64_09955 PF04715 Anthranilate synthase component I, N terminal region AMS64_09955 PF00425 chorismate binding enzyme AMS64_09960 PF00293 NUDIX domain AMS64_09965 PF03222 Tryptophan/tyrosine permease family AMS64_09975 PF00375 Sodium:dicarboxylate symporter family AMS64_09980 PF16124 RecQ zinc-binding AMS64_09980 PF00570 HRDC domain AMS64_09980 PF00271 Helicase conserved C-terminal domain AMS64_09980 PF00270 DEAD/DEAH box helicase AMS64_09980 PF09382 RQC domain AMS64_09985 PF08298 PrkA AAA domain AMS64_09985 PF06798 PrkA serine protein kinase C-terminal domain AMS64_09990 PF04285 Protein of unknown function (DUF444) AMS64_09995 PF04293 SpoVR like protein AMS64_10000 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AMS64_10000 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AMS64_10000 PF00378 Enoyl-CoA hydratase/isomerase AMS64_10005 PF00108 Thiolase, N-terminal domain AMS64_10005 PF02803 Thiolase, C-terminal domain AMS64_10010 PF07726 ATPase family associated with various cellular activities (AAA) AMS64_10010 PF17863 AAA lid domain AMS64_10015 PF01882 Protein of unknown function DUF58 AMS64_10030 PF13519 von Willebrand factor type A domain AMS64_10040 PF08281 Sigma-70, region 4 AMS64_10040 PF04542 Sigma-70 region 2 AMS64_10050 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMS64_10055 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) AMS64_10060 PF00563 EAL domain AMS64_10060 PF08668 HDOD domain AMS64_10065 PF00108 Thiolase, N-terminal domain AMS64_10065 PF02803 Thiolase, C-terminal domain AMS64_10070 PF09278 MerR, DNA binding AMS64_10070 PF00376 MerR family regulatory protein AMS64_10075 PF01386 Ribosomal L25p family AMS64_10085 PF11898 Domain of unknown function (DUF3418) AMS64_10085 PF00270 DEAD/DEAH box helicase AMS64_10085 PF00271 Helicase conserved C-terminal domain AMS64_10085 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AMS64_10085 PF04408 Helicase associated domain (HA2) AMS64_10100 PF00884 Sulfatase AMS64_10105 PF17863 AAA lid domain AMS64_10105 PF07726 ATPase family associated with various cellular activities (AAA) AMS64_10120 PF00092 von Willebrand factor type A domain AMS64_10125 PF13519 von Willebrand factor type A domain AMS64_10125 PF07584 Aerotolerance regulator N-terminal AMS64_10135 PF03466 LysR substrate binding domain AMS64_10135 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_10140 PF03781 Sulfatase-modifying factor enzyme 1 AMS64_10150 PF04055 Radical SAM superfamily AMS64_10150 PF13186 Iron-sulfur cluster-binding domain AMS64_10155 PF08411 Exonuclease C-terminal AMS64_10155 PF00929 Exonuclease AMS64_10170 PF03788 LrgA family AMS64_10175 PF04172 LrgB-like family AMS64_10180 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region AMS64_10180 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMS64_10185 PF01212 Beta-eliminating lyase AMS64_10190 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AMS64_10195 PF01266 FAD dependent oxidoreductase AMS64_10200 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMS64_10200 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMS64_10205 PF02634 FdhD/NarQ family AMS64_10210 PF02954 Bacterial regulatory protein, Fis family AMS64_10210 PF01590 GAF domain AMS64_10210 PF00158 Sigma-54 interaction domain AMS64_10220 PF00384 Molybdopterin oxidoreductase AMS64_10220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_10220 PF01568 Molydopterin dinucleotide binding domain AMS64_10225 PF01568 Molydopterin dinucleotide binding domain AMS64_10225 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_10225 PF00384 Molybdopterin oxidoreductase AMS64_10230 PF13247 4Fe-4S dicluster domain AMS64_10230 PF12800 4Fe-4S binding domain AMS64_10240 PF02705 K+ potassium transporter AMS64_10245 PF00037 4Fe-4S binding domain AMS64_10245 PF12798 4Fe-4S binding domain AMS64_10250 PF00361 Proton-conducting membrane transporter AMS64_10255 PF00146 NADH dehydrogenase AMS64_10260 PF00374 Nickel-dependent hydrogenase AMS64_10260 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMS64_10260 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMS64_10265 PF12838 4Fe-4S dicluster domain AMS64_10270 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMS64_10275 PF07450 Formate hydrogenlyase maturation protein HycH AMS64_10280 PF01750 Hydrogenase maturation protease AMS64_10285 PF12390 Selenocysteine synthase N terminal AMS64_10285 PF03841 L-seryl-tRNA selenium transferase AMS64_10290 PF03144 Elongation factor Tu domain 2 AMS64_10290 PF09105 Elongation factor SelB, winged helix AMS64_10290 PF00009 Elongation factor Tu GTP binding domain AMS64_10290 PF09106 Elongation factor SelB, winged helix AMS64_10290 PF09107 Elongation factor SelB, winged helix AMS64_10295 PF00708 Acylphosphatase AMS64_10295 PF17788 HypF Kae1-like domain AMS64_10295 PF07503 HypF finger AMS64_10295 PF01300 Telomere recombination AMS64_10300 PF01455 HupF/HypC family AMS64_10305 PF01924 Hydrogenase formation hypA family AMS64_10310 PF02769 AIR synthase related protein, C-terminal domain AMS64_10310 PF00586 AIR synthase related protein, N-terminal domain AMS64_10315 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA AMS64_10320 PF02492 CobW/HypB/UreG, nucleotide-binding domain AMS64_10330 PF08402 TOBE domain AMS64_10330 PF00005 ABC transporter AMS64_10335 PF00005 ABC transporter AMS64_10335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_10340 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_10340 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_10345 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_10355 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE AMS64_10360 PF01750 Hydrogenase maturation protease AMS64_10365 PF00374 Nickel-dependent hydrogenase AMS64_10370 PF03916 Polysulphide reductase, NrfD AMS64_10375 PF13247 4Fe-4S dicluster domain AMS64_10380 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMS64_10380 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal AMS64_10390 PF00862 Sucrose synthase AMS64_10390 PF00534 Glycosyl transferases group 1 AMS64_10395 PF00534 Glycosyl transferases group 1 AMS64_10395 PF13439 Glycosyltransferase Family 4 AMS64_10455 PF13439 Glycosyltransferase Family 4 AMS64_10455 PF00534 Glycosyl transferases group 1 AMS64_10460 PF03552 Cellulose synthase AMS64_10460 PF07238 PilZ domain AMS64_10460 PF00535 Glycosyl transferase family 2 AMS64_10465 PF02397 Bacterial sugar transferase AMS64_10470 PF00534 Glycosyl transferases group 1 AMS64_10475 PF00072 Response regulator receiver domain AMS64_10475 PF00211 Adenylate and Guanylate cyclase catalytic domain AMS64_10505 PF00072 Response regulator receiver domain AMS64_10505 PF09308 LuxQ, periplasmic AMS64_10505 PF00512 His Kinase A (phospho-acceptor) domain AMS64_10505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_10510 PF03466 LysR substrate binding domain AMS64_10510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_10515 PF02129 X-Pro dipeptidyl-peptidase (S15 family) AMS64_10525 PF07690 Major Facilitator Superfamily AMS64_10545 PF05284 Protein of unknown function (DUF736) AMS64_10575 PF03772 Competence protein AMS64_10575 PF00753 Metallo-beta-lactamase superfamily AMS64_10575 PF13567 Domain of unknown function (DUF4131) AMS64_10590 PF13737 Transposase DDE domain AMS64_10630 PF01471 Putative peptidoglycan binding domain AMS64_10630 PF13401 AAA domain AMS64_10645 PF01925 Sulfite exporter TauE/SafE AMS64_10650 PF13520 Amino acid permease AMS64_10660 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AMS64_10660 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AMS64_10665 PF00378 Enoyl-CoA hydratase/isomerase AMS64_10670 PF00378 Enoyl-CoA hydratase/isomerase AMS64_10675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS64_10675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS64_10675 PF02770 Acyl-CoA dehydrogenase, middle domain AMS64_10680 PF02770 Acyl-CoA dehydrogenase, middle domain AMS64_10680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS64_10680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS64_10685 PF01039 Carboxyl transferase domain AMS64_10690 PF00378 Enoyl-CoA hydratase/isomerase AMS64_10695 PF00364 Biotin-requiring enzyme AMS64_10695 PF00289 Biotin carboxylase, N-terminal domain AMS64_10695 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS64_10695 PF02785 Biotin carboxylase C-terminal domain AMS64_10700 PF00682 HMGL-like AMS64_10705 PF00376 MerR family regulatory protein AMS64_10705 PF09278 MerR, DNA binding AMS64_10720 PF01184 GPR1/FUN34/yaaH family AMS64_10730 PF06167 Glucose-regulated metallo-peptidase M90 AMS64_10740 PF01235 Sodium:alanine symporter family AMS64_10770 PF00378 Enoyl-CoA hydratase/isomerase AMS64_10785 PF04341 Protein of unknown function, DUF485 AMS64_10790 PF00474 Sodium:solute symporter family AMS64_10795 PF13737 Transposase DDE domain AMS64_10810 PF00665 Integrase core domain AMS64_10815 PF01548 Transposase AMS64_10815 PF02371 Transposase IS116/IS110/IS902 family AMS64_10825 PF12848 ABC transporter AMS64_10825 PF00005 ABC transporter AMS64_10830 PF13145 PPIC-type PPIASE domain AMS64_10835 PF00216 Bacterial DNA-binding protein AMS64_10840 PF05362 Lon protease (S16) C-terminal proteolytic domain AMS64_10840 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_10840 PF02190 ATP-dependent protease La (LON) substrate-binding domain AMS64_10845 PF07724 AAA domain (Cdc48 subfamily) AMS64_10845 PF10431 C-terminal, D2-small domain, of ClpB protein AMS64_10845 PF06689 ClpX C4-type zinc finger AMS64_10850 PF00574 Clp protease AMS64_10855 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_10855 PF05697 Bacterial trigger factor protein (TF) AMS64_10855 PF05698 Bacterial trigger factor protein (TF) C-terminus AMS64_10870 PF02687 FtsX-like permease family AMS64_10870 PF12704 MacB-like periplasmic core domain AMS64_10875 PF00005 ABC transporter AMS64_10880 PF02687 FtsX-like permease family AMS64_10880 PF12704 MacB-like periplasmic core domain AMS64_10890 PF00271 Helicase conserved C-terminal domain AMS64_10890 PF00270 DEAD/DEAH box helicase AMS64_10890 PF17757 UvrB interaction domain AMS64_10890 PF02559 CarD-like/TRCF domain AMS64_10890 PF03461 TRCF domain AMS64_10895 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AMS64_10900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_10905 PF00892 EamA-like transporter family AMS64_10915 PF00300 Histidine phosphatase superfamily (branch 1) AMS64_10920 PF16187 Middle or third domain of peptidase_M16 AMS64_10920 PF00675 Insulinase (Peptidase family M16) AMS64_10920 PF05193 Peptidase M16 inactive domain AMS64_10925 PF05724 Thiopurine S-methyltransferase (TPMT) AMS64_10940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMS64_10940 PF12833 Helix-turn-helix domain AMS64_10940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMS64_10940 PF02805 Metal binding domain of Ada AMS64_10950 PF00958 GMP synthase C terminal domain AMS64_10950 PF00117 Glutamine amidotransferase class-I AMS64_10950 PF02540 NAD synthase AMS64_10955 PF00571 CBS domain AMS64_10955 PF00478 IMP dehydrogenase / GMP reductase domain AMS64_10960 PF01292 Prokaryotic cytochrome b561 AMS64_10965 PF02601 Exonuclease VII, large subunit AMS64_10965 PF13742 OB-fold nucleic acid binding domain AMS64_10970 PF07702 UTRA domain AMS64_10970 PF00392 Bacterial regulatory proteins, gntR family AMS64_10975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AMS64_10975 PF02378 Phosphotransferase system, EIIC AMS64_10975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AMS64_10980 PF01074 Glycosyl hydrolases family 38 N-terminal domain AMS64_10980 PF09261 Alpha mannosidase middle domain AMS64_10980 PF07748 Glycosyl hydrolases family 38 C-terminal domain AMS64_10985 PF01820 D-ala D-ala ligase N-terminus AMS64_10985 PF07478 D-ala D-ala ligase C-terminus AMS64_10995 PF00255 Glutathione peroxidase AMS64_11000 PF00271 Helicase conserved C-terminal domain AMS64_11000 PF00270 DEAD/DEAH box helicase AMS64_11005 PF04055 Radical SAM superfamily AMS64_11010 PF00672 HAMP domain AMS64_11010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_11015 PF00793 DAHP synthetase I family AMS64_11020 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AMS64_11025 PF00266 Aminotransferase class-V AMS64_11030 PF00766 Electron transfer flavoprotein FAD-binding domain AMS64_11030 PF01012 Electron transfer flavoprotein domain AMS64_11035 PF01012 Electron transfer flavoprotein domain AMS64_11045 PF01544 CorA-like Mg2+ transporter protein AMS64_11050 PF11143 Protein of unknown function (DUF2919) AMS64_11060 PF07273 Protein of unknown function (DUF1439) AMS64_11070 PF00483 Nucleotidyl transferase AMS64_11075 PF03707 Bacterial signalling protein N terminal repeat AMS64_11075 PF00563 EAL domain AMS64_11075 PF00990 Diguanylate cyclase, GGDEF domain AMS64_11090 PF00294 pfkB family carbohydrate kinase AMS64_11100 PF00762 Ferrochelatase AMS64_11105 PF05191 Adenylate kinase, active site lid AMS64_11110 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) AMS64_11115 PF00156 Phosphoribosyl transferase domain AMS64_11120 PF02674 Colicin V production protein AMS64_11125 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AMS64_11125 PF02403 Seryl-tRNA synthetase N-terminal domain AMS64_11130 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_11130 PF12002 MgsA AAA+ ATPase C terminal AMS64_11130 PF16193 AAA C-terminal domain AMS64_11135 PF03548 Outer membrane lipoprotein carrier protein LolA AMS64_11140 PF09397 Ftsk gamma domain AMS64_11140 PF01580 FtsK/SpoIIIE family AMS64_11140 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AMS64_11140 PF17854 FtsK alpha domain AMS64_11145 PF01037 Lrp/AsnC ligand binding domain AMS64_11150 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMS64_11150 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMS64_11155 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_11160 PF17158 Membrane-associated sensor, integral membrane domain AMS64_11160 PF00990 Diguanylate cyclase, GGDEF domain AMS64_11165 PF05433 Glycine zipper 2TM domain AMS64_11170 PF03588 Leucyl/phenylalanyl-tRNA protein transferase AMS64_11175 PF04377 Arginine-tRNA-protein transferase, C terminus AMS64_11175 PF04376 Arginine-tRNA-protein transferase, N terminus AMS64_11180 PF01176 Translation initiation factor 1A / IF-1 AMS64_11185 PF10431 C-terminal, D2-small domain, of ClpB protein AMS64_11185 PF02861 Clp amino terminal domain, pathogenicity island component AMS64_11185 PF07724 AAA domain (Cdc48 subfamily) AMS64_11185 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_11185 PF17871 AAA lid domain AMS64_11190 PF02617 ATP-dependent Clp protease adaptor protein ClpS AMS64_11195 PF00313 'Cold-shock' DNA-binding domain AMS64_11200 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AMS64_11200 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AMS64_11225 PF00512 His Kinase A (phospho-acceptor) domain AMS64_11225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_11225 PF00672 HAMP domain AMS64_11235 PF09924 Uncharacterised conserved protein (DUF2156) AMS64_11235 PF03706 Lysylphosphatidylglycerol synthase TM region AMS64_11275 PF02830 V4R domain AMS64_11275 PF06505 Activator of aromatic catabolism AMS64_11275 PF00158 Sigma-54 interaction domain AMS64_11275 PF02954 Bacterial regulatory protein, Fis family AMS64_11280 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_11280 PF07724 AAA domain (Cdc48 subfamily) AMS64_11280 PF10431 C-terminal, D2-small domain, of ClpB protein AMS64_11280 PF17871 AAA lid domain AMS64_11335 PF10722 Putative bacterial sensory transduction regulator AMS64_11345 PF13276 HTH-like domain AMS64_11345 PF00665 Integrase core domain AMS64_11345 PF13333 Integrase core domain AMS64_11355 PF03350 Uncharacterized protein family, UPF0114 AMS64_11370 PF03239 Iron permease FTR1 family AMS64_11375 PF01593 Flavin containing amine oxidoreductase AMS64_11390 PF07690 Major Facilitator Superfamily AMS64_11395 PF03600 Citrate transporter AMS64_11405 PF00005 ABC transporter AMS64_11425 PF00561 alpha/beta hydrolase fold AMS64_11445 PF01625 Peptide methionine sulfoxide reductase AMS64_11450 PF00696 Amino acid kinase family AMS64_11450 PF00583 Acetyltransferase (GNAT) family AMS64_11455 PF01842 ACT domain AMS64_11455 PF00696 Amino acid kinase family AMS64_11465 PF00884 Sulfatase AMS64_11470 PF02016 LD-carboxypeptidase N-terminal domain AMS64_11470 PF17676 LD-carboxypeptidase C-terminal domain AMS64_11475 PF01734 Patatin-like phospholipase AMS64_11480 PF17179 4Fe-4S dicluster domain AMS64_11485 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AMS64_11485 PF00175 Oxidoreductase NAD-binding domain AMS64_11490 PF13187 4Fe-4S dicluster domain AMS64_11490 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AMS64_11490 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AMS64_11495 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AMS64_11495 PF14824 Sirohaem biosynthesis protein central AMS64_11495 PF10414 Sirohaem synthase dimerisation region AMS64_11505 PF01906 Putative heavy-metal-binding AMS64_11510 PF05036 Sporulation related domain AMS64_11515 PF08245 Mur ligase middle domain AMS64_11515 PF02875 Mur ligase family, glutamate ligase domain AMS64_11520 PF01039 Carboxyl transferase domain AMS64_11520 PF17848 Acetyl-coA carboxylase zinc finger domain AMS64_11525 PF01416 tRNA pseudouridine synthase AMS64_11535 PF01118 Semialdehyde dehydrogenase, NAD binding domain AMS64_11535 PF02774 Semialdehyde dehydrogenase, dimerisation domain AMS64_11540 PF11890 Domain of unknown function (DUF3410) AMS64_11540 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS64_11540 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS64_11545 PF01569 PAP2 superfamily AMS64_11550 PF00929 Exonuclease AMS64_11555 PF03553 Na+/H+ antiporter family AMS64_11555 PF13726 Na+-H+ antiporter family AMS64_11560 PF02769 AIR synthase related protein, C-terminal domain AMS64_11560 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AMS64_11560 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AMS64_11565 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_11565 PF01464 Transglycosylase SLT domain AMS64_11570 PF07191 zinc-ribbons AMS64_11575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AMS64_11575 PF01926 50S ribosome-binding GTPase AMS64_11580 PF13360 PQQ-like domain AMS64_11585 PF09976 Tetratricopeptide repeat-like domain AMS64_11590 PF13393 Histidyl-tRNA synthetase AMS64_11590 PF03129 Anticodon binding domain AMS64_11600 PF13464 Domain of unknown function (DUF4115) AMS64_11610 PF04055 Radical SAM superfamily AMS64_11615 PF00334 Nucleoside diphosphate kinase AMS64_11620 PF12404 Peptidase AMS64_11620 PF00883 Cytosol aminopeptidase family, catalytic domain AMS64_11625 PF12404 Peptidase AMS64_11625 PF00883 Cytosol aminopeptidase family, catalytic domain AMS64_11630 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_11635 PF00012 Hsp70 protein AMS64_11640 PF00226 DnaJ domain AMS64_11640 PF07743 HSCB C-terminal oligomerisation domain AMS64_11645 PF01521 Iron-sulphur cluster biosynthesis AMS64_11650 PF01592 NifU-like N terminal domain AMS64_11655 PF00266 Aminotransferase class-V AMS64_11660 PF02082 Transcriptional regulator AMS64_11665 PF00588 SpoU rRNA Methylase family AMS64_11690 PF07719 Tetratricopeptide repeat AMS64_11690 PF13181 Tetratricopeptide repeat AMS64_11700 PF07549 SecD/SecF GG Motif AMS64_11700 PF02355 Protein export membrane protein AMS64_11705 PF13721 SecD export protein N-terminal TM region AMS64_11705 PF02355 Protein export membrane protein AMS64_11705 PF07549 SecD/SecF GG Motif AMS64_11710 PF02699 Preprotein translocase subunit AMS64_11715 PF01702 Queuine tRNA-ribosyltransferase AMS64_11720 PF02547 Queuosine biosynthesis protein AMS64_11725 PF00571 CBS domain AMS64_11730 PF00578 AhpC/TSA family AMS64_11730 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMS64_11735 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_11735 PF13192 Thioredoxin domain AMS64_11750 PF02371 Transposase IS116/IS110/IS902 family AMS64_11750 PF01548 Transposase AMS64_11755 PF00665 Integrase core domain AMS64_11785 PF00664 ABC transporter transmembrane region AMS64_11785 PF00005 ABC transporter AMS64_11785 PF03412 Peptidase C39 family AMS64_11790 PF16199 Radical_SAM C-terminal domain AMS64_11790 PF04055 Radical SAM superfamily AMS64_11800 PF01645 Conserved region in glutamate synthase AMS64_11800 PF04898 Glutamate synthase central domain AMS64_11800 PF01493 GXGXG motif AMS64_11800 PF00310 Glutamine amidotransferases class-II AMS64_11805 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_11805 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMS64_11815 PF00270 DEAD/DEAH box helicase AMS64_11815 PF00271 Helicase conserved C-terminal domain AMS64_11830 PF07664 Ferrous iron transport protein B C terminus AMS64_11830 PF07670 Nucleoside recognition AMS64_11830 PF02421 Ferrous iron transport protein B AMS64_11840 PF01253 Translation initiation factor SUI1 AMS64_11845 PF01169 Uncharacterized protein family UPF0016 AMS64_11885 PF01406 tRNA synthetases class I (C) catalytic domain AMS64_11885 PF09190 DALR domain AMS64_11890 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMS64_11900 PF00149 Calcineurin-like phosphoesterase AMS64_11910 PF04226 Transglycosylase associated protein AMS64_11915 PF08521 Two-component sensor kinase N-terminal AMS64_11915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_11915 PF00512 His Kinase A (phospho-acceptor) domain AMS64_11920 PF00072 Response regulator receiver domain AMS64_11920 PF00486 Transcriptional regulatory protein, C terminal AMS64_11935 PF01970 Tripartite tricarboxylate transporter TctA family AMS64_11985 PF00589 Phage integrase family AMS64_11985 PF13356 Arm DNA-binding domain AMS64_12085 PF01343 Peptidase family S49 AMS64_12100 PF03354 Phage Terminase AMS64_12135 PF00717 Peptidase S24-like AMS64_12140 PF00817 impB/mucB/samB family AMS64_12140 PF13438 Domain of unknown function (DUF4113) AMS64_12140 PF11798 IMS family HHH motif AMS64_12140 PF11799 impB/mucB/samB family C-terminal domain AMS64_12145 PF12441 CopG antitoxin of type II toxin-antitoxin system AMS64_12300 PF00436 Single-strand binding protein family AMS64_12325 PF01066 CDP-alcohol phosphatidyltransferase AMS64_12330 PF08459 UvrC Helix-hairpin-helix N-terminal AMS64_12330 PF02151 UvrB/uvrC motif AMS64_12330 PF01541 GIY-YIG catalytic domain AMS64_12335 PF00196 Bacterial regulatory proteins, luxR family AMS64_12335 PF00072 Response regulator receiver domain AMS64_12340 PF02348 Cytidylyltransferase AMS64_12345 PF03966 Trm112p-like protein AMS64_12350 PF02606 Tetraacyldisaccharide-1-P 4'-kinase AMS64_12355 PF00005 ABC transporter AMS64_12355 PF00664 ABC transporter transmembrane region AMS64_12360 PF00753 Metallo-beta-lactamase superfamily AMS64_12360 PF03772 Competence protein AMS64_12375 PF00155 Aminotransferase class I and II AMS64_12385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_12385 PF03466 LysR substrate binding domain AMS64_12390 PF04219 Protein of unknown function, DUF AMS64_12395 PF03974 Ecotin AMS64_12400 PF03009 Glycerophosphoryl diester phosphodiesterase family AMS64_12405 PF01266 FAD dependent oxidoreductase AMS64_12405 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AMS64_12410 PF08220 DeoR-like helix-turn-helix domain AMS64_12410 PF00455 DeoR C terminal sensor domain AMS64_12415 PF07690 Major Facilitator Superfamily AMS64_12420 PF00230 Major intrinsic protein AMS64_12425 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AMS64_12425 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AMS64_12430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_12430 PF00672 HAMP domain AMS64_12430 PF02743 Cache domain AMS64_12440 PF03466 LysR substrate binding domain AMS64_12440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_12465 PF00248 Aldo/keto reductase family AMS64_12475 PF07690 Major Facilitator Superfamily AMS64_12480 PF02525 Flavodoxin-like fold AMS64_12490 PF05114 Protein of unknown function (DUF692) AMS64_12510 PF02322 Cytochrome bd terminal oxidase subunit II AMS64_12515 PF01654 Cytochrome bd terminal oxidase subunit I AMS64_12520 PF00155 Aminotransferase class I and II AMS64_12520 PF00392 Bacterial regulatory proteins, gntR family AMS64_12530 PF04391 Protein of unknown function (DUF533) AMS64_12535 PF03061 Thioesterase superfamily AMS64_12540 PF03466 LysR substrate binding domain AMS64_12540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_12545 PF07690 Major Facilitator Superfamily AMS64_12550 PF01479 S4 domain AMS64_12550 PF00849 RNA pseudouridylate synthase AMS64_12560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS64_12575 PF18284 DNA methylase N-terminal domain AMS64_12575 PF00145 C-5 cytosine-specific DNA methylase AMS64_12580 PF09019 EcoRII C terminal AMS64_12580 PF09217 Restriction endonuclease EcoRII, N-terminal AMS64_12585 PF02508 Rnf-Nqr subunit, membrane protein AMS64_12590 PF04060 Putative Fe-S cluster AMS64_12595 PF10531 SLBB domain AMS64_12595 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMS64_12595 PF12838 4Fe-4S dicluster domain AMS64_12595 PF13375 RnfC Barrel sandwich hybrid domain AMS64_12600 PF03116 NQR2, RnfD, RnfE family AMS64_12605 PF04205 FMN-binding domain AMS64_12610 PF02508 Rnf-Nqr subunit, membrane protein AMS64_12615 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS64_12615 PF00633 Helix-hairpin-helix motif AMS64_12615 PF10576 Iron-sulfur binding domain of endonuclease III AMS64_12620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS64_12625 PF00691 OmpA family AMS64_12625 PF18393 MotY N-terminal domain AMS64_12645 PF08378 Nuclease-related domain AMS64_12650 PF07759 Protein of unknown function (DUF1615) AMS64_12655 PF02142 MGS-like domain AMS64_12655 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AMS64_12655 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS64_12660 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AMS64_12660 PF00117 Glutamine amidotransferase class-I AMS64_12665 PF05173 Dihydrodipicolinate reductase, C-terminus AMS64_12665 PF01113 Dihydrodipicolinate reductase, N-terminus AMS64_12680 PF01812 5-formyltetrahydrofolate cyclo-ligase family AMS64_12685 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AMS64_12690 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AMS64_12690 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AMS64_12690 PF01842 ACT domain AMS64_12695 PF01219 Prokaryotic diacylglycerol kinase AMS64_12700 PF00793 DAHP synthetase I family AMS64_12705 PF00005 ABC transporter AMS64_12710 PF01032 FecCD transport family AMS64_12725 PF00437 Type II/IV secretion system protein AMS64_12735 PF00842 Alanine racemase, C-terminal domain AMS64_12735 PF01168 Alanine racemase, N-terminal domain AMS64_12740 PF03741 Integral membrane protein TerC family AMS64_12745 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_12745 PF00005 ABC transporter AMS64_12750 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_12750 PF00005 ABC transporter AMS64_12755 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_12755 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_12760 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_12765 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_12770 PF01914 MarC family integral membrane protein AMS64_12775 PF00465 Iron-containing alcohol dehydrogenase AMS64_12775 PF00171 Aldehyde dehydrogenase family AMS64_12780 PF01709 Transcriptional regulator AMS64_12785 PF02938 GAD domain AMS64_12785 PF00152 tRNA synthetases class II (D, K and N) AMS64_12785 PF01336 OB-fold nucleic acid binding domain AMS64_12795 PF01904 Protein of unknown function DUF72 AMS64_12800 PF13649 Methyltransferase domain AMS64_12805 PF08003 Protein of unknown function (DUF1698) AMS64_12825 PF10417 C-terminal domain of 1-Cys peroxiredoxin AMS64_12825 PF00578 AhpC/TSA family AMS64_12830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_12830 PF03466 LysR substrate binding domain AMS64_12835 PF00877 NlpC/P60 family AMS64_12840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_12840 PF03466 LysR substrate binding domain AMS64_12850 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_12855 PF00180 Isocitrate/isopropylmalate dehydrogenase AMS64_12860 PF12833 Helix-turn-helix domain AMS64_12865 PF01238 Phosphomannose isomerase type I AMS64_12870 PF00672 HAMP domain AMS64_12870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_12890 PF05656 Protein of unknown function (DUF805) AMS64_12900 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AMS64_12900 PF00034 Cytochrome c AMS64_12910 PF01156 Inosine-uridine preferring nucleoside hydrolase AMS64_12920 PF00171 Aldehyde dehydrogenase family AMS64_12925 PF00440 Bacterial regulatory proteins, tetR family AMS64_12925 PF08359 YsiA-like protein, C-terminal region AMS64_12935 PF00465 Iron-containing alcohol dehydrogenase AMS64_12955 PF01554 MatE AMS64_12965 PF04325 Protein of unknown function (DUF465) AMS64_12975 PF00990 Diguanylate cyclase, GGDEF domain AMS64_12975 PF03707 Bacterial signalling protein N terminal repeat AMS64_12975 PF00563 EAL domain AMS64_12975 PF13188 PAS domain AMS64_12980 PF04337 Protein of unknown function, DUF480 AMS64_12990 PF00127 Copper binding proteins, plastocyanin/azurin family AMS64_12995 PF02424 ApbE family AMS64_13000 PF00486 Transcriptional regulatory protein, C terminal AMS64_13000 PF00072 Response regulator receiver domain AMS64_13010 PF03372 Endonuclease/Exonuclease/phosphatase family AMS64_13015 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_13020 PF00873 AcrB/AcrD/AcrF family AMS64_13045 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_13045 PF00529 HlyD membrane-fusion protein of T1SS AMS64_13050 PF00873 AcrB/AcrD/AcrF family AMS64_13060 PF01497 Periplasmic binding protein AMS64_13065 PF00005 ABC transporter AMS64_13070 PF01032 FecCD transport family AMS64_13075 PF01032 FecCD transport family AMS64_13080 PF04954 Siderophore-interacting protein AMS64_13080 PF08021 Siderophore-interacting FAD-binding domain AMS64_13085 PF11849 Domain of unknown function (DUF3369) AMS64_13095 PF00929 Exonuclease AMS64_13100 PF00075 RNase H AMS64_13105 PF08241 Methyltransferase domain AMS64_13110 PF00753 Metallo-beta-lactamase superfamily AMS64_13110 PF16123 Hydroxyacylglutathione hydrolase C-terminus AMS64_13115 PF01464 Transglycosylase SLT domain AMS64_13115 PF01476 LysM domain AMS64_13120 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AMS64_13130 PF05472 DNA replication terminus site-binding protein (Ter protein) AMS64_13135 PF04434 SWIM zinc finger AMS64_13135 PF00271 Helicase conserved C-terminal domain AMS64_13135 PF00176 SNF2 family N-terminal domain AMS64_13140 PF00512 His Kinase A (phospho-acceptor) domain AMS64_13140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_13140 PF00672 HAMP domain AMS64_13145 PF00072 Response regulator receiver domain AMS64_13145 PF00486 Transcriptional regulatory protein, C terminal AMS64_13150 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_13150 PF00529 HlyD membrane-fusion protein of T1SS AMS64_13155 PF00873 AcrB/AcrD/AcrF family AMS64_13170 PF03734 L,D-transpeptidase catalytic domain AMS64_13170 PF17969 L,D-transpeptidase C-terminal domain AMS64_13170 PF01476 LysM domain AMS64_13180 PF00939 Sodium:sulfate symporter transmembrane region AMS64_13190 PF05971 RNA methyltransferase AMS64_13195 PF00877 NlpC/P60 family AMS64_13200 PF01648 4'-phosphopantetheinyl transferase superfamily AMS64_13205 PF00085 Thioredoxin AMS64_13215 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMS64_13220 PF00551 Formyl transferase AMS64_13220 PF01842 ACT domain AMS64_13230 PF13091 PLD-like domain AMS64_13230 PF13396 Phospholipase_D-nuclease N-terminal AMS64_13250 PF00230 Major intrinsic protein AMS64_13260 PF00155 Aminotransferase class I and II AMS64_13265 PF03606 C4-dicarboxylate anaerobic carrier AMS64_13270 PF12241 Trans-2-enoyl-CoA reductase catalytic region AMS64_13270 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase AMS64_13270 PF07055 Enoyl reductase FAD binding domain AMS64_13275 PF00672 HAMP domain AMS64_13275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_13275 PF12729 Four helix bundle sensory module for signal transduction AMS64_13280 PF00300 Histidine phosphatase superfamily (branch 1) AMS64_13285 PF08348 YheO-like PAS domain AMS64_13285 PF13309 HTH domain AMS64_13290 PF03313 Serine dehydratase alpha chain AMS64_13295 PF01042 Endoribonuclease L-PSP AMS64_13305 PF00672 HAMP domain AMS64_13305 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_13305 PF12729 Four helix bundle sensory module for signal transduction AMS64_13320 PF00753 Metallo-beta-lactamase superfamily AMS64_13320 PF14863 Alkyl sulfatase dimerisation AMS64_13320 PF14864 Alkyl sulfatase C-terminal AMS64_13330 PF17944 Arginine decarboxylase C-terminal helical extension AMS64_13330 PF17810 Arginine decarboxylase helical bundle domain AMS64_13330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMS64_13335 PF07687 Peptidase dimerisation domain AMS64_13335 PF01546 Peptidase family M20/M25/M40 AMS64_13360 PF04264 YceI-like domain AMS64_13365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_13365 PF03466 LysR substrate binding domain AMS64_13375 PF01268 Formate--tetrahydrofolate ligase AMS64_13380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_13380 PF00672 HAMP domain AMS64_13380 PF17200 Single Cache domain 2 AMS64_13385 PF00672 HAMP domain AMS64_13385 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_13390 PF01227 GTP cyclohydrolase I AMS64_13395 PF00994 Probable molybdopterin binding domain AMS64_13395 PF03454 MoeA C-terminal region (domain IV) AMS64_13395 PF03453 MoeA N-terminal region (domain I and II) AMS64_13400 PF00899 ThiF family AMS64_13415 PF06291 Bor protein AMS64_13420 PF06291 Bor protein AMS64_13430 PF06406 StbA protein AMS64_13435 PF00561 alpha/beta hydrolase fold AMS64_13440 PF03459 TOBE domain AMS64_13440 PF00005 ABC transporter AMS64_13445 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_13455 PF02391 MoaE protein AMS64_13460 PF02597 ThiS family AMS64_13465 PF01967 MoaC family AMS64_13470 PF00994 Probable molybdopterin binding domain AMS64_13475 PF03264 NapC/NirT cytochrome c family, N-terminal region AMS64_13480 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) AMS64_13485 PF12837 4Fe-4S binding domain AMS64_13485 PF12801 4Fe-4S binding domain AMS64_13490 PF12800 4Fe-4S binding domain AMS64_13490 PF12838 4Fe-4S dicluster domain AMS64_13495 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_13495 PF00384 Molybdopterin oxidoreductase AMS64_13495 PF01568 Molydopterin dinucleotide binding domain AMS64_13495 PF10518 TAT (twin-arginine translocation) pathway signal sequence AMS64_13505 PF12838 4Fe-4S dicluster domain AMS64_13505 PF13187 4Fe-4S dicluster domain AMS64_13510 PF04055 Radical SAM superfamily AMS64_13510 PF06463 Molybdenum Cofactor Synthesis C AMS64_13515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_13515 PF00672 HAMP domain AMS64_13515 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AMS64_13515 PF07730 Histidine kinase AMS64_13520 PF00072 Response regulator receiver domain AMS64_13520 PF00196 Bacterial regulatory proteins, luxR family AMS64_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_13530 PF00512 His Kinase A (phospho-acceptor) domain AMS64_13530 PF09456 RcsC Alpha-Beta-Loop (ABL) AMS64_13530 PF00072 Response regulator receiver domain AMS64_13540 PF01933 Uncharacterised protein family UPF0052 AMS64_13550 PF13230 Glutamine amidotransferases class-II AMS64_13555 PF13580 SIS domain AMS64_13560 PF02770 Acyl-CoA dehydrogenase, middle domain AMS64_13560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS64_13560 PF09317 Domain of unknown function (DUF1974) AMS64_13560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS64_13565 PF07687 Peptidase dimerisation domain AMS64_13565 PF01546 Peptidase family M20/M25/M40 AMS64_13575 PF03364 Polyketide cyclase / dehydrase and lipid transport AMS64_13580 PF01668 SmpB protein AMS64_13585 PF00589 Phage integrase family AMS64_13585 PF13356 Arm DNA-binding domain AMS64_13620 PF01076 Plasmid recombination enzyme AMS64_13650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_13650 PF00072 Response regulator receiver domain AMS64_13650 PF00512 His Kinase A (phospho-acceptor) domain AMS64_13650 PF09456 RcsC Alpha-Beta-Loop (ABL) AMS64_13655 PF03707 Bacterial signalling protein N terminal repeat AMS64_13655 PF00563 EAL domain AMS64_13655 PF00990 Diguanylate cyclase, GGDEF domain AMS64_13660 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_13660 PF12838 4Fe-4S dicluster domain AMS64_13660 PF00384 Molybdopterin oxidoreductase AMS64_13660 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS64_13660 PF01568 Molydopterin dinucleotide binding domain AMS64_13675 PF00440 Bacterial regulatory proteins, tetR family AMS64_13680 PF02770 Acyl-CoA dehydrogenase, middle domain AMS64_13680 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AMS64_13680 PF09317 Domain of unknown function (DUF1974) AMS64_13680 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AMS64_13685 PF00873 AcrB/AcrD/AcrF family AMS64_13695 PF02075 Crossover junction endodeoxyribonuclease RuvC AMS64_13710 PF06578 YOP proteins translocation protein K (YscK) AMS64_13715 PF01514 Secretory protein of YscJ/FliF family AMS64_13720 PF17001 Type III secretion basal body protein I, YscI, HrpB, PscI AMS64_13725 PF09025 YopR, type III needle-polymerisation regulator AMS64_13730 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) AMS64_13735 PF09392 Type III secretion needle MxiH, YscF, SsaG, EprI, PscF, EscF AMS64_13745 PF16697 Inner membrane component of T3SS, cytoplasmic domain AMS64_13745 PF16693 Inner membrane component of T3SS, periplasmic domain AMS64_13755 PF05932 Tir chaperone protein (CesT) family AMS64_13765 PF12833 Helix-turn-helix domain AMS64_13780 PF05932 Tir chaperone protein (CesT) family AMS64_13785 PF05844 YopD protein AMS64_13790 PF04888 Secretion system effector C (SseC) like family AMS64_13795 PF07720 Tetratricopeptide repeat AMS64_13800 PF04792 V antigen (LcrV) protein AMS64_13805 PF07216 LcrG protein AMS64_13810 PF09621 Type III secretion system regulator (LcrR) AMS64_13815 PF00771 FHIPEP family AMS64_13825 PF09474 Type III secretion system YscX (type_III_YscX) AMS64_13835 PF09059 TyeA AMS64_13840 PF07201 HrpJ-like domain AMS64_13845 PF02874 ATP synthase alpha/beta family, beta-barrel domain AMS64_13845 PF18269 T3SS EscN ATPase C-terminal domain AMS64_13845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AMS64_13865 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AMS64_13870 PF00813 FliP family AMS64_13875 PF01313 Bacterial export proteins, family 3 AMS64_13880 PF01311 Bacterial export proteins, family 1 AMS64_13895 PF02371 Transposase IS116/IS110/IS902 family AMS64_13895 PF01548 Transposase AMS64_13900 PF00665 Integrase core domain AMS64_13900 PF13333 Integrase core domain AMS64_13900 PF13276 HTH-like domain AMS64_13915 PF00005 ABC transporter AMS64_13920 PF01032 FecCD transport family AMS64_13925 PF01032 FecCD transport family AMS64_13930 PF01497 Periplasmic binding protein AMS64_13935 PF00593 TonB dependent receptor AMS64_13935 PF07660 Secretin and TonB N terminus short domain AMS64_13935 PF07715 TonB-dependent Receptor Plug Domain AMS64_13940 PF00593 TonB dependent receptor AMS64_13940 PF07715 TonB-dependent Receptor Plug Domain AMS64_13945 PF02655 ATP-grasp domain AMS64_13945 PF00206 Lyase AMS64_13950 PF06276 Ferric iron reductase FhuF-like transporter AMS64_13950 PF04183 IucA / IucC family AMS64_13965 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMS64_13965 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMS64_13970 PF00141 Peroxidase AMS64_13975 PF13737 Transposase DDE domain AMS64_13980 PF00816 H-NS histone family AMS64_13990 PF13148 Protein of unknown function (DUF3987) AMS64_14025 PF04002 RadC-like JAB domain AMS64_14075 PF06154 CbeA_antitoxin, type IV, cytoskeleton bundling-enhancing factor A AMS64_14105 PF01740 STAS domain AMS64_14105 PF00916 Sulfate permease family AMS64_14155 PF14659 Phage integrase, N-terminal SAM-like domain AMS64_14155 PF00589 Phage integrase family AMS64_14155 PF13356 Arm DNA-binding domain AMS64_14165 PF05154 TM2 domain AMS64_14205 PF00665 Integrase core domain AMS64_14210 PF02371 Transposase IS116/IS110/IS902 family AMS64_14210 PF01548 Transposase AMS64_14230 PF00265 Thymidine kinase AMS64_14235 PF03553 Na+/H+ antiporter family AMS64_14240 PF00816 H-NS histone family AMS64_14245 PF01923 Cobalamin adenosyltransferase AMS64_14250 PF12843 Putative quorum-sensing-regulated virulence factor AMS64_14255 PF04055 Radical SAM superfamily AMS64_14260 PF06508 Queuosine biosynthesis protein QueC AMS64_14275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AMS64_14280 PF18073 Rubredoxin metal binding domain AMS64_14290 PF00216 Bacterial DNA-binding protein AMS64_14295 PF00575 S1 RNA binding domain AMS64_14300 PF02224 Cytidylate kinase AMS64_14305 PF00925 GTP cyclohydrolase II AMS64_14310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_14310 PF03466 LysR substrate binding domain AMS64_14315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_14315 PF03466 LysR substrate binding domain AMS64_14320 PF07690 Major Facilitator Superfamily AMS64_14335 PF00881 Nitroreductase family AMS64_14340 PF03806 AbgT putative transporter family AMS64_14345 PF00563 EAL domain AMS64_14345 PF00990 Diguanylate cyclase, GGDEF domain AMS64_14345 PF03707 Bacterial signalling protein N terminal repeat AMS64_14345 PF13188 PAS domain AMS64_14350 PF03466 LysR substrate binding domain AMS64_14350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_14355 PF00072 Response regulator receiver domain AMS64_14365 PF01212 Beta-eliminating lyase AMS64_14370 PF00106 short chain dehydrogenase AMS64_14380 PF00248 Aldo/keto reductase family AMS64_14385 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) AMS64_14395 PF00005 ABC transporter AMS64_14400 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14405 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_14410 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14415 PF03411 Penicillin-insensitive murein endopeptidase AMS64_14425 PF04536 TPM domain AMS64_14445 PF13737 Transposase DDE domain AMS64_14450 PF02146 Sir2 family AMS64_14460 PF01618 MotA/TolQ/ExbB proton channel family AMS64_14465 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMS64_14465 PF00691 OmpA family AMS64_14470 PF00593 TonB dependent receptor AMS64_14470 PF07715 TonB-dependent Receptor Plug Domain AMS64_14475 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMS64_14475 PF00326 Prolyl oligopeptidase family AMS64_14495 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AMS64_14500 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AMS64_14505 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AMS64_14505 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AMS64_14515 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AMS64_14515 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMS64_14520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AMS64_14520 PF00384 Molybdopterin oxidoreductase AMS64_14520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AMS64_14525 PF00146 NADH dehydrogenase AMS64_14530 PF12838 4Fe-4S dicluster domain AMS64_14535 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AMS64_14540 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AMS64_14545 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AMS64_14545 PF00361 Proton-conducting membrane transporter AMS64_14550 PF00361 Proton-conducting membrane transporter AMS64_14555 PF00361 Proton-conducting membrane transporter AMS64_14565 PF00072 Response regulator receiver domain AMS64_14570 PF01966 HD domain AMS64_14575 PF03707 Bacterial signalling protein N terminal repeat AMS64_14575 PF00990 Diguanylate cyclase, GGDEF domain AMS64_14575 PF00563 EAL domain AMS64_14575 PF13188 PAS domain AMS64_14585 PF13276 HTH-like domain AMS64_14585 PF00665 Integrase core domain AMS64_14585 PF13333 Integrase core domain AMS64_14595 PF03880 DbpA RNA binding domain AMS64_14595 PF00270 DEAD/DEAH box helicase AMS64_14595 PF00271 Helicase conserved C-terminal domain AMS64_14600 PF03061 Thioesterase superfamily AMS64_14610 PF13183 4Fe-4S dicluster domain AMS64_14610 PF01565 FAD binding domain AMS64_14610 PF02913 FAD linked oxidases, C-terminal domain AMS64_14620 PF03741 Integral membrane protein TerC family AMS64_14620 PF03471 Transporter associated domain AMS64_14625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMS64_14635 PF00962 Adenosine/AMP deaminase AMS64_14640 PF13344 Haloacid dehalogenase-like hydrolase AMS64_14645 PF02254 TrkA-N domain AMS64_14645 PF00999 Sodium/hydrogen exchanger family AMS64_14655 PF13537 Glutamine amidotransferase domain AMS64_14655 PF00733 Asparagine synthase AMS64_14665 PF14497 Glutathione S-transferase, C-terminal domain AMS64_14665 PF02798 Glutathione S-transferase, N-terminal domain AMS64_14675 PF04209 homogentisate 1,2-dioxygenase AMS64_14680 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS64_14690 PF00849 RNA pseudouridylate synthase AMS64_14695 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14700 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14705 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_14710 PF00005 ABC transporter AMS64_14715 PF03956 Lysine exporter LysO AMS64_14720 PF01979 Amidohydrolase family AMS64_14725 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_14735 PF04336 Acyl carrier protein phosphodiesterase AMS64_14745 PF03960 ArsC family AMS64_14750 PF00578 AhpC/TSA family AMS64_14755 PF07720 Tetratricopeptide repeat AMS64_14755 PF01435 Peptidase family M48 AMS64_14760 PF01206 Sulfurtransferase TusA AMS64_14765 PF01594 AI-2E family transporter AMS64_14775 PF00561 alpha/beta hydrolase fold AMS64_14780 PF03976 Polyphosphate kinase 2 (PPK2) AMS64_14785 PF08402 TOBE domain AMS64_14785 PF00005 ABC transporter AMS64_14790 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14795 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_14795 PF14785 Maltose transport system permease protein MalF P2 domain AMS64_14800 PF01547 Bacterial extracellular solute-binding protein AMS64_14805 PF04245 37-kD nucleoid-associated bacterial protein AMS64_14810 PF07208 Protein of unknown function (DUF1414) AMS64_14815 PF00884 Sulfatase AMS64_14815 PF11893 Domain of unknown function (DUF3413) AMS64_14820 PF03180 NLPA lipoprotein AMS64_14825 PF00082 Subtilase family AMS64_14825 PF01483 Proprotein convertase P-domain AMS64_14835 PF02896 PEP-utilising enzyme, TIM barrel domain AMS64_14835 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AMS64_14835 PF00391 PEP-utilising enzyme, mobile domain AMS64_14840 PF03618 Kinase/pyrophosphorylase AMS64_14850 PF00324 Amino acid permease AMS64_14870 PF08447 PAS fold AMS64_14870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_14930 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AMS64_14930 PF18766 SWI2/SNF2 ATPase AMS64_14930 PF11867 Domain of unknown function (DUF3387) AMS64_14935 PF05762 VWA domain containing CoxE-like protein AMS64_14940 PF12592 Protein of unknown function (DUF3763) AMS64_14940 PF17868 AAA lid domain AMS64_14940 PF07728 AAA domain (dynein-related subfamily) AMS64_14945 PF02810 SEC-C motif AMS64_14945 PF03695 Uncharacterised protein family (UPF0149) AMS64_14955 PF12161 HsdM N-terminal domain AMS64_14955 PF02384 N-6 DNA Methylase AMS64_14960 PF02347 Glycine cleavage system P-protein AMS64_14965 PF01597 Glycine cleavage H-protein AMS64_14970 PF08669 Glycine cleavage T-protein C-terminal barrel domain AMS64_14970 PF01571 Aminomethyltransferase folate-binding domain AMS64_14975 PF01494 FAD binding domain AMS64_14980 PF01494 FAD binding domain AMS64_14985 PF03695 Uncharacterised protein family (UPF0149) AMS64_14990 PF05164 Cell division protein ZapA AMS64_14995 PF07690 Major Facilitator Superfamily AMS64_15000 PF02798 Glutathione S-transferase, N-terminal domain AMS64_15000 PF00043 Glutathione S-transferase, C-terminal domain AMS64_15010 PF00459 Inositol monophosphatase family AMS64_15015 PF02535 ZIP Zinc transporter AMS64_15020 PF01048 Phosphorylase superfamily AMS64_15030 PF01497 Periplasmic binding protein AMS64_15035 PF02719 Polysaccharide biosynthesis protein AMS64_15040 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AMS64_15050 PF02348 Cytidylyltransferase AMS64_15055 PF00202 Aminotransferase class-III AMS64_15080 PF02561 Flagellar protein FliS AMS64_15085 PF07196 Flagellin hook IN motif AMS64_15085 PF07195 Flagellar hook-associated protein 2 C-terminus AMS64_15085 PF02465 Flagellar hook-associated protein 2 N-terminus AMS64_15095 PF00669 Bacterial flagellin N-terminal helical region AMS64_15095 PF07196 Flagellin hook IN motif AMS64_15095 PF00700 Bacterial flagellin C-terminal helical region AMS64_15100 PF07196 Flagellin hook IN motif AMS64_15100 PF00669 Bacterial flagellin N-terminal helical region AMS64_15100 PF00700 Bacterial flagellin C-terminal helical region AMS64_15105 PF00700 Bacterial flagellin C-terminal helical region AMS64_15105 PF07196 Flagellin hook IN motif AMS64_15105 PF00669 Bacterial flagellin N-terminal helical region AMS64_15110 PF03458 UPF0126 domain AMS64_15120 PF02926 THUMP domain AMS64_15120 PF02568 Thiamine biosynthesis protein (ThiI) AMS64_15130 PF00905 Penicillin binding protein transpeptidase domain AMS64_15130 PF00912 Transglycosylase AMS64_15130 PF06832 Penicillin-Binding Protein C-terminus Family AMS64_15135 PF17962 Bacterial macroglobulin domain 6 AMS64_15135 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AMS64_15135 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AMS64_15135 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AMS64_15135 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AMS64_15135 PF07703 Alpha-2-macroglobulin bait region domain AMS64_15135 PF07678 A-macroglobulin TED domain AMS64_15135 PF00207 Alpha-2-macroglobulin family AMS64_15135 PF01835 MG2 domain AMS64_15145 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_15145 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS64_15150 PF00990 Diguanylate cyclase, GGDEF domain AMS64_15150 PF00563 EAL domain AMS64_15150 PF03707 Bacterial signalling protein N terminal repeat AMS64_15155 PF04055 Radical SAM superfamily AMS64_15165 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_15170 PF05728 Uncharacterised protein family (UPF0227) AMS64_15175 PF00860 Permease family AMS64_15180 PF01432 Peptidase family M3 AMS64_15180 PF08439 Oligopeptidase F AMS64_15185 PF05661 Protein of unknown function (DUF808) AMS64_15195 PF13426 PAS domain AMS64_15195 PF08447 PAS fold AMS64_15195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_15200 PF00375 Sodium:dicarboxylate symporter family AMS64_15215 PF01979 Amidohydrolase family AMS64_15225 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_15225 PF12729 Four helix bundle sensory module for signal transduction AMS64_15225 PF00672 HAMP domain AMS64_15230 PF01230 HIT domain AMS64_15265 PF13721 SecD export protein N-terminal TM region AMS64_15265 PF02355 Protein export membrane protein AMS64_15265 PF07549 SecD/SecF GG Motif AMS64_15270 PF02355 Protein export membrane protein AMS64_15270 PF07549 SecD/SecF GG Motif AMS64_15275 PF00483 Nucleotidyl transferase AMS64_15280 PF00793 DAHP synthetase I family AMS64_15285 PF01817 Chorismate mutase type II AMS64_15285 PF02153 Prephenate dehydrogenase AMS64_15290 PF13609 Gram-negative porin AMS64_15295 PF06733 DEAD_2 AMS64_15295 PF13307 Helicase C-terminal domain AMS64_15305 PF00850 Histone deacetylase domain AMS64_15310 PF01926 50S ribosome-binding GTPase AMS64_15315 PF00245 Alkaline phosphatase AMS64_15320 PF00245 Alkaline phosphatase AMS64_15335 PF14760 Rnk N-terminus AMS64_15335 PF01272 Transcription elongation factor, GreA/GreB, C-term AMS64_15340 PF00196 Bacterial regulatory proteins, luxR family AMS64_15340 PF00072 Response regulator receiver domain AMS64_15345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_15345 PF07730 Histidine kinase AMS64_15345 PF05231 MASE1 AMS64_15350 PF07690 Major Facilitator Superfamily AMS64_15355 PF00990 Diguanylate cyclase, GGDEF domain AMS64_15360 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_15365 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_15370 PF00005 ABC transporter AMS64_15380 PF04116 Fatty acid hydroxylase superfamily AMS64_15385 PF13520 Amino acid permease AMS64_15390 PF02607 B12 binding domain AMS64_15390 PF02310 B12 binding domain AMS64_15390 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMS64_15390 PF02574 Homocysteine S-methyltransferase AMS64_15390 PF00809 Pterin binding enzyme AMS64_15400 PF00571 CBS domain AMS64_15400 PF03471 Transporter associated domain AMS64_15400 PF01595 Cyclin M transmembrane N-terminal domain AMS64_15405 PF01895 PhoU domain AMS64_15415 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_15420 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_15425 PF14437 MafB19-like deaminase AMS64_15435 PF01274 Malate synthase AMS64_15440 PF00463 Isocitrate lyase family AMS64_15445 PF00308 Bacterial dnaA protein AMS64_15460 PF00586 AIR synthase related protein, N-terminal domain AMS64_15460 PF02769 AIR synthase related protein, C-terminal domain AMS64_15465 PF00551 Formyl transferase AMS64_15705 PF00589 Phage integrase family AMS64_15705 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_15710 PF01784 NIF3 (NGG1p interacting factor 3) AMS64_15715 PF00158 Sigma-54 interaction domain AMS64_15715 PF02954 Bacterial regulatory protein, Fis family AMS64_15720 PF00989 PAS fold AMS64_15720 PF00512 His Kinase A (phospho-acceptor) domain AMS64_15720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_15725 PF00072 Response regulator receiver domain AMS64_15725 PF00158 Sigma-54 interaction domain AMS64_15725 PF02954 Bacterial regulatory protein, Fis family AMS64_15735 PF01842 ACT domain AMS64_15740 PF17941 Polyphosphate kinase C-terminal domain 1 AMS64_15740 PF13089 Polyphosphate kinase N-terminal domain AMS64_15740 PF13090 Polyphosphate kinase C-terminal domain 2 AMS64_15740 PF02503 Polyphosphate kinase middle domain AMS64_15745 PF02541 Ppx/GppA phosphatase family AMS64_15750 PF00571 CBS domain AMS64_15750 PF03448 MgtE intracellular N domain AMS64_15750 PF01769 Divalent cation transporter AMS64_15755 PF00669 Bacterial flagellin N-terminal helical region AMS64_15760 PF07196 Flagellin hook IN motif AMS64_15760 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_15765 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AMS64_15765 PF10135 Rod binding protein AMS64_15770 PF02119 Flagellar P-ring protein AMS64_15775 PF02107 Flagellar L-ring protein AMS64_15780 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_15780 PF00460 Flagella basal body rod protein AMS64_15785 PF00460 Flagella basal body rod protein AMS64_15785 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_15790 PF07559 Flagellar basal body protein FlaE AMS64_15790 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_15790 PF00460 Flagella basal body rod protein AMS64_15795 PF03963 Flagellar hook capping protein - N-terminal region AMS64_15795 PF13861 FlgD Tudor-like domain AMS64_15795 PF13860 FlgD Ig-like domain AMS64_15800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AMS64_15800 PF00460 Flagella basal body rod protein AMS64_15805 PF00460 Flagella basal body rod protein AMS64_15810 PF01739 CheR methyltransferase, SAM binding domain AMS64_15810 PF03705 CheR methyltransferase, all-alpha domain AMS64_15815 PF01584 CheW-like domain AMS64_15815 PF00072 Response regulator receiver domain AMS64_15820 PF13144 Chaperone for flagella basal body P-ring formation AMS64_15835 PF12850 Calcineurin-like phosphoesterase superfamily domain AMS64_15840 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_15850 PF01479 S4 domain AMS64_15850 PF00849 RNA pseudouridylate synthase AMS64_15855 PF01966 HD domain AMS64_15865 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMS64_15870 PF04055 Radical SAM superfamily AMS64_15880 PF08220 DeoR-like helix-turn-helix domain AMS64_15880 PF00455 DeoR C terminal sensor domain AMS64_15885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_15910 PF00313 'Cold-shock' DNA-binding domain AMS64_15915 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AMS64_15915 PF00364 Biotin-requiring enzyme AMS64_15915 PF02817 e3 binding domain AMS64_15920 PF02779 Transketolase, pyrimidine binding domain AMS64_15920 PF02780 Transketolase, C-terminal domain AMS64_15925 PF00676 Dehydrogenase E1 component AMS64_15935 PF00975 Thioesterase domain AMS64_15935 PF00550 Phosphopantetheine attachment site AMS64_15935 PF00501 AMP-binding enzyme AMS64_15935 PF00668 Condensation domain AMS64_15945 PF00550 Phosphopantetheine attachment site AMS64_15945 PF00857 Isochorismatase family AMS64_15950 PF00501 AMP-binding enzyme AMS64_15950 PF13193 AMP-binding enzyme C-terminal domain AMS64_15955 PF00425 chorismate binding enzyme AMS64_15960 PF00593 TonB dependent receptor AMS64_15960 PF07715 TonB-dependent Receptor Plug Domain AMS64_15965 PF00793 DAHP synthetase I family AMS64_15970 PF00356 Bacterial regulatory proteins, lacI family AMS64_15975 PF14718 Soluble lytic murein transglycosylase L domain AMS64_15975 PF01464 Transglycosylase SLT domain AMS64_15980 PF03707 Bacterial signalling protein N terminal repeat AMS64_15980 PF00990 Diguanylate cyclase, GGDEF domain AMS64_15980 PF00563 EAL domain AMS64_15985 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AMS64_16005 PF04357 TamB, inner membrane protein subunit of TAM complex AMS64_16010 PF07244 Surface antigen variable number repeat AMS64_16010 PF01103 Surface antigen AMS64_16010 PF17243 POTRA domain TamA domain 1 AMS64_16030 PF02627 Carboxymuconolactone decarboxylase family AMS64_16035 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS64_16035 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_16035 PF00403 Heavy-metal-associated domain AMS64_16040 PF13416 Bacterial extracellular solute-binding protein AMS64_16050 PF00005 ABC transporter AMS64_16055 PF01066 CDP-alcohol phosphatidyltransferase AMS64_16060 PF13406 Transglycosylase SLT domain AMS64_16065 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMS64_16065 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMS64_16065 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMS64_16065 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMS64_16070 PF17206 SeqA protein N-terminal domain AMS64_16070 PF03925 SeqA protein C-terminal domain AMS64_16075 PF12697 Alpha/beta hydrolase family AMS64_16085 PF01402 Ribbon-helix-helix protein, copG family AMS64_16090 PF00258 Flavodoxin AMS64_16100 PF01475 Ferric uptake regulator family AMS64_16105 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AMS64_16105 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS64_16110 PF00728 Glycosyl hydrolase family 20, catalytic domain AMS64_16110 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain AMS64_16110 PF03173 Putative carbohydrate binding domain AMS64_16110 PF02838 Glycosyl hydrolase family 20, domain 2 AMS64_16115 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMS64_16115 PF00367 phosphotransferase system, EIIB AMS64_16115 PF02378 Phosphotransferase system, EIIC AMS64_16120 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AMS64_16125 PF01979 Amidohydrolase family AMS64_16130 PF01047 MarR family AMS64_16130 PF00480 ROK family AMS64_16135 PF00884 Sulfatase AMS64_16135 PF08019 Phosphoethanolamine transferase EptA/EptB AMS64_16140 PF01966 HD domain AMS64_16145 PF07694 5TMR of 5TMR-LYT AMS64_16145 PF06580 Histidine kinase AMS64_16150 PF00072 Response regulator receiver domain AMS64_16150 PF04397 LytTr DNA-binding domain AMS64_16155 PF02554 Carbon starvation protein CstA AMS64_16160 PF11742 Protein of unknown function (DUF3302) AMS64_16165 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_16165 PF00529 HlyD membrane-fusion protein of T1SS AMS64_16170 PF00271 Helicase conserved C-terminal domain AMS64_16170 PF04851 Type III restriction enzyme, res subunit AMS64_16175 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AMS64_16180 PF00462 Glutaredoxin AMS64_16185 PF03372 Endonuclease/Exonuclease/phosphatase family AMS64_16195 PF03061 Thioesterase superfamily AMS64_16200 PF01370 NAD dependent epimerase/dehydratase family AMS64_16210 PF10371 Domain of unknown function AMS64_16210 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II AMS64_16210 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg AMS64_16210 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase AMS64_16210 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS64_16215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AMS64_16215 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AMS64_16215 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_16225 PF03473 MOSC domain AMS64_16225 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_16225 PF03476 MOSC N-terminal beta barrel domain AMS64_16225 PF03473 MOSC domain AMS64_16225 PF03476 MOSC N-terminal beta barrel domain AMS64_16225 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_16230 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_16230 PF08447 PAS fold AMS64_16230 PF13426 PAS domain AMS64_16235 PF01435 Peptidase family M48 AMS64_16245 PF12697 Alpha/beta hydrolase family AMS64_16245 PF08241 Methyltransferase domain AMS64_16250 PF00155 Aminotransferase class I and II AMS64_16255 PF06968 Biotin and Thiamin Synthesis associated domain AMS64_16255 PF04055 Radical SAM superfamily AMS64_16260 PF00202 Aminotransferase class-III AMS64_16275 PF00152 tRNA synthetases class II (D, K and N) AMS64_16275 PF01336 OB-fold nucleic acid binding domain AMS64_16285 PF03605 Anaerobic c4-dicarboxylate membrane transporter AMS64_16300 PF03960 ArsC family AMS64_16305 PF01546 Peptidase family M20/M25/M40 AMS64_16305 PF07687 Peptidase dimerisation domain AMS64_16310 PF02557 D-alanyl-D-alanine carboxypeptidase AMS64_16315 PF02080 TrkA-C domain AMS64_16315 PF00999 Sodium/hydrogen exchanger family AMS64_16315 PF03471 Transporter associated domain AMS64_16330 PF01810 LysE type translocator AMS64_16335 PF12729 Four helix bundle sensory module for signal transduction AMS64_16335 PF00672 HAMP domain AMS64_16335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_16340 PF07509 Protein of unknown function (DUF1523) AMS64_16360 PF01156 Inosine-uridine preferring nucleoside hydrolase AMS64_16365 PF00849 RNA pseudouridylate synthase AMS64_16370 PF01048 Phosphorylase superfamily AMS64_16375 PF00465 Iron-containing alcohol dehydrogenase AMS64_16380 PF04355 SmpA / OmlA family AMS64_16385 PF13460 NAD(P)H-binding AMS64_16395 PF10437 Bacterial lipoate protein ligase C-terminus AMS64_16395 PF03099 Biotin/lipoate A/B protein ligase family AMS64_16400 PF00563 EAL domain AMS64_16400 PF00990 Diguanylate cyclase, GGDEF domain AMS64_16400 PF03707 Bacterial signalling protein N terminal repeat AMS64_16405 PF00005 ABC transporter AMS64_16405 PF02687 FtsX-like permease family AMS64_16405 PF12704 MacB-like periplasmic core domain AMS64_16410 PF12704 MacB-like periplasmic core domain AMS64_16410 PF02687 FtsX-like permease family AMS64_16410 PF00005 ABC transporter AMS64_16415 PF00005 ABC transporter AMS64_16415 PF02687 FtsX-like permease family AMS64_16415 PF12704 MacB-like periplasmic core domain AMS64_16420 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_16420 PF00529 HlyD membrane-fusion protein of T1SS AMS64_16425 PF00873 AcrB/AcrD/AcrF family AMS64_16440 PF04143 Sulphur transport AMS64_16455 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_16465 PF02308 MgtC family AMS64_16470 PF13407 Periplasmic binding protein domain AMS64_16470 PF00356 Bacterial regulatory proteins, lacI family AMS64_16475 PF08244 Glycosyl hydrolases family 32 C terminal AMS64_16475 PF00251 Glycosyl hydrolases family 32 N-terminal domain AMS64_16480 PF00367 phosphotransferase system, EIIB AMS64_16480 PF02378 Phosphotransferase system, EIIC AMS64_16485 PF00294 pfkB family carbohydrate kinase AMS64_16490 PF02264 LamB porin AMS64_16490 PF11471 Maltoporin periplasmic N-terminal extension AMS64_16495 PF01556 DnaJ C terminal domain AMS64_16495 PF00226 DnaJ domain AMS64_16495 PF00684 DnaJ central domain AMS64_16500 PF00012 Hsp70 protein AMS64_16505 PF01025 GrpE AMS64_16510 PF01513 ATP-NAD kinase AMS64_16515 PF02463 RecF/RecN/SMC N terminal domain AMS64_16520 PF02833 DHHA2 domain AMS64_16520 PF01368 DHH family AMS64_16525 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_16530 PF00005 ABC transporter AMS64_16530 PF12704 MacB-like periplasmic core domain AMS64_16530 PF02687 FtsX-like permease family AMS64_16535 PF02321 Outer membrane efflux protein AMS64_16540 PF13737 Transposase DDE domain AMS64_16545 PF00816 H-NS histone family AMS64_16555 PF02397 Bacterial sugar transferase AMS64_16565 PF13439 Glycosyltransferase Family 4 AMS64_16565 PF00534 Glycosyl transferases group 1 AMS64_16570 PF00535 Glycosyl transferase family 2 AMS64_16580 PF02719 Polysaccharide biosynthesis protein AMS64_16585 PF00953 Glycosyl transferase family 4 AMS64_16590 PF01370 NAD dependent epimerase/dehydratase family AMS64_16600 PF01757 Acyltransferase family AMS64_16620 PF00005 ABC transporter AMS64_16625 PF01061 ABC-2 type transporter AMS64_16635 PF00263 Bacterial type II and III secretion system protein AMS64_16635 PF03958 Bacterial type II/III secretion system short domain AMS64_16670 PF08334 Type II secretion system (T2SS), protein G AMS64_16670 PF07963 Prokaryotic N-terminal methylation motif AMS64_16675 PF08334 Type II secretion system (T2SS), protein G AMS64_16675 PF07963 Prokaryotic N-terminal methylation motif AMS64_16680 PF00482 Type II secretion system (T2SS), protein F AMS64_16685 PF00437 Type II/IV secretion system protein AMS64_16690 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AMS64_16695 PF00483 Nucleotidyl transferase AMS64_16700 PF04321 RmlD substrate binding domain AMS64_16705 PF16363 GDP-mannose 4,6 dehydratase AMS64_16710 PF00873 AcrB/AcrD/AcrF family AMS64_16715 PF00529 HlyD membrane-fusion protein of T1SS AMS64_16715 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_16720 PF00440 Bacterial regulatory proteins, tetR family AMS64_16720 PF08361 MAATS-type transcriptional repressor, C-terminal region AMS64_16735 PF02001 Protein of unknown function DUF134 AMS64_16750 PF00072 Response regulator receiver domain AMS64_16755 PF04055 Radical SAM superfamily AMS64_16755 PF18693 TRAM domain AMS64_16755 PF00919 Uncharacterized protein family UPF0004 AMS64_16805 PF01048 Phosphorylase superfamily AMS64_16815 PF14821 Threonine synthase N terminus AMS64_16815 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_16820 PF08544 GHMP kinases C terminal AMS64_16820 PF00288 GHMP kinases N terminal domain AMS64_16825 PF00696 Amino acid kinase family AMS64_16825 PF01842 ACT domain AMS64_16825 PF13840 ACT domain AMS64_16825 PF03447 Homoserine dehydrogenase, NAD binding domain AMS64_16825 PF00742 Homoserine dehydrogenase AMS64_16830 PF00588 SpoU rRNA Methylase family AMS64_16835 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) AMS64_16850 PF00849 RNA pseudouridylate synthase AMS64_16850 PF01479 S4 domain AMS64_16855 PF04079 Segregation and condensation complex subunit ScpB AMS64_16860 PF02616 Segregation and condensation protein ScpA AMS64_16865 PF01300 Telomere recombination AMS64_16870 PF02811 PHP domain AMS64_16875 PF00425 chorismate binding enzyme AMS64_16875 PF04715 Anthranilate synthase component I, N terminal region AMS64_16880 PF00117 Glutamine amidotransferase class-I AMS64_16880 PF02885 Glycosyl transferase family, helical bundle domain AMS64_16880 PF00591 Glycosyl transferase family, a/b domain AMS64_16885 PF00591 Glycosyl transferase family, a/b domain AMS64_16885 PF02885 Glycosyl transferase family, helical bundle domain AMS64_16890 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AMS64_16890 PF00218 Indole-3-glycerol phosphate synthase AMS64_16895 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_16900 PF00290 Tryptophan synthase alpha chain AMS64_16910 PF04307 LexA-binding, inner membrane-associated putative hydrolase AMS64_16925 PF01773 Na+ dependent nucleoside transporter N-terminus AMS64_16925 PF07662 Na+ dependent nucleoside transporter C-terminus AMS64_16925 PF07670 Nucleoside recognition AMS64_16930 PF03960 ArsC family AMS64_16935 PF01758 Sodium Bile acid symporter family AMS64_16940 PF02374 Anion-transporting ATPase AMS64_16945 PF06953 Arsenical resistance operon trans-acting repressor ArsD AMS64_16965 PF03737 Aldolase/RraA AMS64_16975 PF00486 Transcriptional regulatory protein, C terminal AMS64_16975 PF00072 Response regulator receiver domain AMS64_16990 PF00005 ABC transporter AMS64_16990 PF00664 ABC transporter transmembrane region AMS64_16995 PF00664 ABC transporter transmembrane region AMS64_16995 PF00005 ABC transporter AMS64_17015 PF18389 TrmO C-terminal domain AMS64_17015 PF01980 tRNA-methyltransferase O AMS64_17020 PF01292 Prokaryotic cytochrome b561 AMS64_17030 PF00486 Transcriptional regulatory protein, C terminal AMS64_17030 PF00072 Response regulator receiver domain AMS64_17035 PF08918 PhoQ Sensor AMS64_17035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_17040 PF03350 Uncharacterized protein family, UPF0114 AMS64_17055 PF01266 FAD dependent oxidoreductase AMS64_17060 PF01381 Helix-turn-helix AMS64_17060 PF07883 Cupin domain AMS64_17065 PF00171 Aldehyde dehydrogenase family AMS64_17070 PF00202 Aminotransferase class-III AMS64_17075 PF00324 Amino acid permease AMS64_17090 PF00324 Amino acid permease AMS64_17095 PF02690 Na+/Pi-cotransporter AMS64_17100 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMS64_17100 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_17110 PF04381 Putative exonuclease, RdgC AMS64_17120 PF00149 Calcineurin-like phosphoesterase AMS64_17120 PF12320 Type 5 capsule protein repressor C-terminal domain AMS64_17125 PF13476 AAA domain AMS64_17130 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AMS64_17140 PF02887 Pyruvate kinase, alpha/beta domain AMS64_17140 PF00224 Pyruvate kinase, barrel domain AMS64_17145 PF12794 Mechanosensitive ion channel inner membrane domain 1 AMS64_17145 PF00924 Mechanosensitive ion channel AMS64_17145 PF12795 Mechanosensitive ion channel porin domain AMS64_17155 PF05649 Peptidase family M13 AMS64_17155 PF01431 Peptidase family M13 AMS64_17160 PF08448 PAS fold AMS64_17160 PF00990 Diguanylate cyclase, GGDEF domain AMS64_17165 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMS64_17170 PF05524 PEP-utilising enzyme, N-terminal AMS64_17170 PF00391 PEP-utilising enzyme, mobile domain AMS64_17170 PF02896 PEP-utilising enzyme, TIM barrel domain AMS64_17175 PF00381 PTS HPr component phosphorylation site AMS64_17180 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_17185 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_17185 PF17862 AAA+ lid domain AMS64_17185 PF01434 Peptidase family M41 AMS64_17195 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AMS64_17195 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AMS64_17200 PF01966 HD domain AMS64_17200 PF00672 HAMP domain AMS64_17205 PF13401 AAA domain AMS64_17205 PF01471 Putative peptidoglycan binding domain AMS64_17210 PF16537 Type II secretion system protein B AMS64_17215 PF11356 Type II secretion system protein C AMS64_17220 PF03958 Bacterial type II/III secretion system short domain AMS64_17220 PF00263 Bacterial type II and III secretion system protein AMS64_17225 PF00437 Type II/IV secretion system protein AMS64_17230 PF00482 Type II secretion system (T2SS), protein F AMS64_17235 PF07963 Prokaryotic N-terminal methylation motif AMS64_17235 PF08334 Type II secretion system (T2SS), protein G AMS64_17240 PF12019 Type II transport protein GspH AMS64_17240 PF07963 Prokaryotic N-terminal methylation motif AMS64_17245 PF02501 Type II secretion system (T2SS), protein I AMS64_17245 PF07963 Prokaryotic N-terminal methylation motif AMS64_17250 PF07963 Prokaryotic N-terminal methylation motif AMS64_17250 PF11612 Type II secretion system (T2SS), protein J AMS64_17255 PF03934 Type II secretion system (T2SS), protein K AMS64_17260 PF12693 GspL periplasmic domain AMS64_17260 PF05134 Type II secretion system (T2SS), protein L AMS64_17265 PF04612 Type II secretion system (T2SS), protein M AMS64_17270 PF01203 Type II secretion system (T2SS), protein N AMS64_17280 PF01027 Inhibitor of apoptosis-promoting Bax1 AMS64_17285 PF12805 FUSC-like inner membrane protein yccS AMS64_17290 PF04358 DsrC like protein AMS64_17295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS64_17300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17300 PF03466 LysR substrate binding domain AMS64_17315 PF04389 Peptidase family M28 AMS64_17315 PF04151 Bacterial pre-peptidase C-terminal domain AMS64_17340 PF04055 Radical SAM superfamily AMS64_17340 PF11842 Domain of unknown function (DUF3362) AMS64_17340 PF08497 Radical SAM N-terminal AMS64_17345 PF00873 AcrB/AcrD/AcrF family AMS64_17350 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_17350 PF00529 HlyD membrane-fusion protein of T1SS AMS64_17355 PF17158 Membrane-associated sensor, integral membrane domain AMS64_17355 PF00990 Diguanylate cyclase, GGDEF domain AMS64_17360 PF01734 Patatin-like phospholipase AMS64_17395 PF13520 Amino acid permease AMS64_17410 PF00691 OmpA family AMS64_17410 PF01389 OmpA-like transmembrane domain AMS64_17420 PF00691 OmpA family AMS64_17420 PF01389 OmpA-like transmembrane domain AMS64_17425 PF03949 Malic enzyme, NAD binding domain AMS64_17425 PF00390 Malic enzyme, N-terminal domain AMS64_17430 PF12833 Helix-turn-helix domain AMS64_17435 PF01554 MatE AMS64_17440 PF10692 Protein of unknown function (DUF2498) AMS64_17445 PF00990 Diguanylate cyclase, GGDEF domain AMS64_17450 PF00860 Permease family AMS64_17460 PF01235 Sodium:alanine symporter family AMS64_17465 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AMS64_17465 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AMS64_17470 PF01699 Sodium/calcium exchanger protein AMS64_17475 PF08534 Redoxin AMS64_17485 PF00293 NUDIX domain AMS64_17500 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase AMS64_17500 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_17505 PF03932 CutC family AMS64_17510 PF00480 ROK family AMS64_17520 PF01435 Peptidase family M48 AMS64_17525 PF12849 PBP superfamily domain AMS64_17530 PF00512 His Kinase A (phospho-acceptor) domain AMS64_17530 PF00989 PAS fold AMS64_17530 PF11808 Phosphate regulon sensor protein PhoR AMS64_17530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_17535 PF00486 Transcriptional regulatory protein, C terminal AMS64_17535 PF00072 Response regulator receiver domain AMS64_17540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AMS64_17545 PF02954 Bacterial regulatory protein, Fis family AMS64_17545 PF00158 Sigma-54 interaction domain AMS64_17545 PF01590 GAF domain AMS64_17550 PF00171 Aldehyde dehydrogenase family AMS64_17560 PF00892 EamA-like transporter family AMS64_17565 PF12431 Transcriptional regulator AMS64_17565 PF00072 Response regulator receiver domain AMS64_17570 PF00989 PAS fold AMS64_17570 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AMS64_17570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_17570 PF17203 Single cache domain 3 AMS64_17575 PF03949 Malic enzyme, NAD binding domain AMS64_17575 PF00390 Malic enzyme, N-terminal domain AMS64_17580 PF03390 2-hydroxycarboxylate transporter family AMS64_17585 PF01047 MarR family AMS64_17590 PF00529 HlyD membrane-fusion protein of T1SS AMS64_17590 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_17620 PF13597 Anaerobic ribonucleoside-triphosphate reductase AMS64_17620 PF03477 ATP cone domain AMS64_17630 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AMS64_17630 PF00533 BRCA1 C Terminus (BRCT) domain AMS64_17630 PF12826 Helix-hairpin-helix motif AMS64_17630 PF03120 NAD-dependent DNA ligase OB-fold domain AMS64_17630 PF01653 NAD-dependent DNA ligase adenylation domain AMS64_17635 PF04354 ZipA, C-terminal FtsZ-binding domain AMS64_17640 PF06470 SMC proteins Flexible Hinge Domain AMS64_17640 PF02463 RecF/RecN/SMC N terminal domain AMS64_17650 PF03458 UPF0126 domain AMS64_17660 PF05951 Bacterial protein of unknown function (DUF882) AMS64_17665 PF01471 Putative peptidoglycan binding domain AMS64_17665 PF03734 L,D-transpeptidase catalytic domain AMS64_17680 PF00535 Glycosyl transferase family 2 AMS64_17695 PF00128 Alpha amylase, catalytic domain AMS64_17705 PF00072 Response regulator receiver domain AMS64_17705 PF00196 Bacterial regulatory proteins, luxR family AMS64_17725 PF00999 Sodium/hydrogen exchanger family AMS64_17725 PF02080 TrkA-C domain AMS64_17725 PF02254 TrkA-N domain AMS64_17730 PF00990 Diguanylate cyclase, GGDEF domain AMS64_17735 PF01171 PP-loop family AMS64_17735 PF09179 TilS substrate binding domain AMS64_17735 PF11734 TilS substrate C-terminal domain AMS64_17740 PF05649 Peptidase family M13 AMS64_17740 PF01431 Peptidase family M13 AMS64_17755 PF08543 Phosphomethylpyrimidine kinase AMS64_17760 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AMS64_17760 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AMS64_17760 PF01276 Orn/Lys/Arg decarboxylase, major domain AMS64_17765 PF13520 Amino acid permease AMS64_17770 PF18500 CadC C-terminal domain 1 AMS64_17770 PF00486 Transcriptional regulatory protein, C terminal AMS64_17775 PF13520 Amino acid permease AMS64_17780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17780 PF03466 LysR substrate binding domain AMS64_17785 PF12706 Beta-lactamase superfamily domain AMS64_17800 PF03466 LysR substrate binding domain AMS64_17800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17810 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS64_17810 PF00205 Thiamine pyrophosphate enzyme, central domain AMS64_17810 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS64_17815 PF03306 Alpha-acetolactate decarboxylase AMS64_17820 PF03466 LysR substrate binding domain AMS64_17820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17825 PF00579 tRNA synthetases class I (W and Y) AMS64_17830 PF01476 LysM domain AMS64_17830 PF08525 Opacity-associated protein A N-terminal motif AMS64_17830 PF01551 Peptidase family M23 AMS64_17835 PF03702 Anhydro-N-acetylmuramic acid kinase AMS64_17845 PF01042 Endoribonuclease L-PSP AMS64_17855 PF01965 DJ-1/PfpI family AMS64_17860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17860 PF03466 LysR substrate binding domain AMS64_17865 PF08659 KR domain AMS64_17865 PF00550 Phosphopantetheine attachment site AMS64_17865 PF00109 Beta-ketoacyl synthase, N-terminal domain AMS64_17865 PF02801 Beta-ketoacyl synthase, C-terminal domain AMS64_17865 PF16197 Ketoacyl-synthetase C-terminal extension AMS64_17865 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_17865 PF14765 Polyketide synthase dehydratase AMS64_17865 PF00698 Acyl transferase domain AMS64_17875 PF02780 Transketolase, C-terminal domain AMS64_17875 PF02779 Transketolase, pyrimidine binding domain AMS64_17875 PF00456 Transketolase, thiamine diphosphate binding domain AMS64_17880 PF00438 S-adenosylmethionine synthetase, N-terminal domain AMS64_17880 PF02773 S-adenosylmethionine synthetase, C-terminal domain AMS64_17880 PF02772 S-adenosylmethionine synthetase, central domain AMS64_17885 PF10263 SprT-like family AMS64_17885 PF17283 SprT-like zinc ribbon domain AMS64_17890 PF04231 Endonuclease I AMS64_17895 PF04452 RNA methyltransferase AMS64_17900 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AMS64_17900 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AMS64_17905 PF02622 Uncharacterized ACR, COG1678 AMS64_17910 PF03652 Holliday junction resolvase AMS64_17915 PF00854 POT family AMS64_17920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_17920 PF03466 LysR substrate binding domain AMS64_17925 PF07690 Major Facilitator Superfamily AMS64_17930 PF17863 AAA lid domain AMS64_17930 PF07726 ATPase family associated with various cellular activities (AAA) AMS64_17940 PF11992 Domain of unknown function (DUF3488) AMS64_17940 PF01841 Transglutaminase-like superfamily AMS64_17940 PF13559 Domain of unknown function (DUF4129) AMS64_17945 PF01235 Sodium:alanine symporter family AMS64_17950 PF00923 Transaldolase/Fructose-6-phosphate aldolase AMS64_17960 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AMS64_17965 PF01336 OB-fold nucleic acid binding domain AMS64_17965 PF02811 PHP domain AMS64_17965 PF14579 Helix-hairpin-helix motif AMS64_17965 PF07733 Bacterial DNA polymerase III alpha NTPase domain AMS64_17965 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AMS64_17970 PF01351 Ribonuclease HII AMS64_17975 PF02684 Lipid-A-disaccharide synthetase AMS64_17980 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_17980 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AMS64_17985 PF07977 FabA-like domain AMS64_17990 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AMS64_17990 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_17995 PF03938 Outer membrane protein (OmpH-like) AMS64_18000 PF07244 Surface antigen variable number repeat AMS64_18000 PF01103 Surface antigen AMS64_18005 PF17820 PDZ domain AMS64_18005 PF02163 Peptidase family M50 AMS64_18010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AMS64_18010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AMS64_18010 PF13288 DXP reductoisomerase C-terminal domain AMS64_18020 PF01255 Putative undecaprenyl diphosphate synthase AMS64_18025 PF01765 Ribosome recycling factor AMS64_18030 PF00696 Amino acid kinase family AMS64_18035 PF00889 Elongation factor TS AMS64_18040 PF00318 Ribosomal protein S2 AMS64_18045 PF00557 Metallopeptidase family M24 AMS64_18050 PF08335 GlnD PII-uridylyltransferase AMS64_18050 PF01909 Nucleotidyltransferase domain AMS64_18050 PF01842 ACT domain AMS64_18050 PF01966 HD domain AMS64_18055 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AMS64_18055 PF14602 Hexapeptide repeat of succinyl-transferase AMS64_18055 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_18060 PF11944 Protein of unknown function (DUF3461) AMS64_18065 PF02378 Phosphotransferase system, EIIC AMS64_18065 PF00367 phosphotransferase system, EIIB AMS64_18070 PF07148 Maltose operon periplasmic protein precursor (MalM) AMS64_18075 PF02264 LamB porin AMS64_18080 PF00258 Flavodoxin AMS64_18085 PF00849 RNA pseudouridylate synthase AMS64_18090 PF04287 tRNA pseudouridine synthase C AMS64_18115 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) AMS64_18120 PF07348 Syd protein (SUKH-2) AMS64_18125 PF14489 QueF-like protein AMS64_18125 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AMS64_18135 PF17158 Membrane-associated sensor, integral membrane domain AMS64_18135 PF00990 Diguanylate cyclase, GGDEF domain AMS64_18140 PF03641 Possible lysine decarboxylase AMS64_18140 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases AMS64_18140 PF11892 Domain of unknown function (DUF3412) AMS64_18145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AMS64_18145 PF01367 5'-3' exonuclease, C-terminal SAM fold AMS64_18150 PF18324 Hypothetical protein TT1725 AMS64_18150 PF00180 Isocitrate/isopropylmalate dehydrogenase AMS64_18160 PF18125 RlmM ferredoxin-like domain AMS64_18160 PF01728 FtsJ-like methyltransferase AMS64_18165 PF04241 Protein of unknown function (DUF423) AMS64_18175 PF03466 LysR substrate binding domain AMS64_18175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_18180 PF00672 HAMP domain AMS64_18180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_18185 PF11798 IMS family HHH motif AMS64_18185 PF00817 impB/mucB/samB family AMS64_18185 PF11799 impB/mucB/samB family C-terminal domain AMS64_18195 PF01965 DJ-1/PfpI family AMS64_18200 PF08546 Ketopantoate reductase PanE/ApbA C terminal AMS64_18200 PF02558 Ketopantoate reductase PanE/ApbA AMS64_18205 PF04461 Protein of unknown function (DUF520) AMS64_18210 PF03502 Nucleoside-specific channel-forming protein, Tsx AMS64_18215 PF07690 Major Facilitator Superfamily AMS64_18220 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AMS64_18230 PF05175 Methyltransferase small domain AMS64_18235 PF01722 BolA-like protein AMS64_18240 PF11973 NQRA C-terminal domain AMS64_18240 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) AMS64_18245 PF03116 NQR2, RnfD, RnfE family AMS64_18250 PF04205 FMN-binding domain AMS64_18255 PF02508 Rnf-Nqr subunit, membrane protein AMS64_18260 PF02508 Rnf-Nqr subunit, membrane protein AMS64_18265 PF00175 Oxidoreductase NAD-binding domain AMS64_18265 PF00970 Oxidoreductase FAD-binding domain AMS64_18265 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_18270 PF02424 ApbE family AMS64_18315 PF00106 short chain dehydrogenase AMS64_18325 PF03441 FAD binding domain of DNA photolyase AMS64_18325 PF00875 DNA photolyase AMS64_18330 PF13411 MerR HTH family regulatory protein AMS64_18335 PF08349 Protein of unknown function (DUF1722) AMS64_18350 PF06508 Queuosine biosynthesis protein QueC AMS64_18365 PF00800 Prephenate dehydratase AMS64_18365 PF01817 Chorismate mutase type II AMS64_18395 PF09588 YqaJ-like viral recombinase domain AMS64_18440 PF04002 RadC-like JAB domain AMS64_18455 PF00665 Integrase core domain AMS64_18460 PF02371 Transposase IS116/IS110/IS902 family AMS64_18460 PF01548 Transposase AMS64_18525 PF00717 Peptidase S24-like AMS64_18530 PF00817 impB/mucB/samB family AMS64_18530 PF13438 Domain of unknown function (DUF4113) AMS64_18530 PF11798 IMS family HHH motif AMS64_18530 PF11799 impB/mucB/samB family C-terminal domain AMS64_18590 PF05638 Type VI secretion system effector, Hcp AMS64_18605 PF03573 outer membrane porin, OprD family AMS64_18610 PF00106 short chain dehydrogenase AMS64_18635 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AMS64_18665 PF07963 Prokaryotic N-terminal methylation motif AMS64_18665 PF00114 Pilin (bacterial filament) AMS64_18670 PF06029 AlkA N-terminal domain AMS64_18670 PF12833 Helix-turn-helix domain AMS64_18670 PF00730 HhH-GPD superfamily base excision DNA repair protein AMS64_18670 PF02805 Metal binding domain of Ada AMS64_18675 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMS64_18675 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMS64_18680 PF01136 Peptidase family U32 AMS64_18680 PF12392 Collagenase AMS64_18685 PF01810 LysE type translocator AMS64_18690 PF03466 LysR substrate binding domain AMS64_18690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_18700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_18700 PF00672 HAMP domain AMS64_18715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_18715 PF01627 Hpt domain AMS64_18715 PF02895 Signal transducing histidine kinase, homodimeric domain AMS64_18715 PF07194 P2 response regulator binding domain AMS64_18715 PF01584 CheW-like domain AMS64_18720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_18720 PF00672 HAMP domain AMS64_18720 PF12729 Four helix bundle sensory module for signal transduction AMS64_18725 PF01584 CheW-like domain AMS64_18730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_18730 PF00672 HAMP domain AMS64_18735 PF03705 CheR methyltransferase, all-alpha domain AMS64_18735 PF01739 CheR methyltransferase, SAM binding domain AMS64_18740 PF03975 CheD chemotactic sensory transduction AMS64_18745 PF00072 Response regulator receiver domain AMS64_18745 PF01339 CheB methylesterase AMS64_18750 PF01138 3' exoribonuclease family, domain 1 AMS64_18750 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AMS64_18750 PF00013 KH domain AMS64_18750 PF03725 3' exoribonuclease family, domain 2 AMS64_18750 PF00575 S1 RNA binding domain AMS64_18755 PF00312 Ribosomal protein S15 AMS64_18760 PF16198 tRNA pseudouridylate synthase B C-terminal domain AMS64_18760 PF09157 Pseudouridine synthase II TruB, C-terminal AMS64_18760 PF01509 TruB family pseudouridylate synthase (N terminal domain) AMS64_18765 PF02033 Ribosome-binding factor A AMS64_18770 PF08364 Bacterial translation initiation factor IF-2 associated region AMS64_18770 PF11987 Translation-initiation factor 2 AMS64_18770 PF04760 Translation initiation factor IF-2, N-terminal region AMS64_18770 PF00009 Elongation factor Tu GTP binding domain AMS64_18775 PF08529 NusA N-terminal domain AMS64_18775 PF00575 S1 RNA binding domain AMS64_18775 PF13184 NusA-like KH domain AMS64_18780 PF17384 RimP C-terminal SH3 domain AMS64_18780 PF02576 RimP N-terminal domain AMS64_18795 PF03840 Preprotein translocase SecG subunit AMS64_18800 PF00121 Triosephosphate isomerase AMS64_18805 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AMS64_18805 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AMS64_18805 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AMS64_18805 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AMS64_18810 PF00809 Pterin binding enzyme AMS64_18815 PF01434 Peptidase family M41 AMS64_18815 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_18815 PF17862 AAA+ lid domain AMS64_18815 PF06480 FtsH Extracellular AMS64_18820 PF01728 FtsJ-like methyltransferase AMS64_18825 PF01985 CRS1 / YhbY (CRM) domain AMS64_18835 PF03449 Transcription elongation factor, N-terminal AMS64_18835 PF01272 Transcription elongation factor, GreA/GreB, C-term AMS64_18840 PF13677 Membrane MotB of proton-channel complex MotA/MotB AMS64_18840 PF00691 OmpA family AMS64_18845 PF01618 MotA/TolQ/ExbB proton channel family AMS64_18850 PF02609 Exonuclease VII small subunit AMS64_18855 PF00348 Polyprenyl synthetase AMS64_18860 PF02779 Transketolase, pyrimidine binding domain AMS64_18860 PF02780 Transketolase, C-terminal domain AMS64_18860 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AMS64_18865 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_18865 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_18875 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AMS64_18880 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_18880 PF00005 ABC transporter AMS64_18885 PF04608 Phosphatidylglycerophosphatase A AMS64_18890 PF02769 AIR synthase related protein, C-terminal domain AMS64_18890 PF00586 AIR synthase related protein, N-terminal domain AMS64_18895 PF01029 NusB family AMS64_18900 PF00885 6,7-dimethyl-8-ribityllumazine synthase AMS64_18910 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AMS64_18910 PF00925 GTP cyclohydrolase II AMS64_18915 PF00677 Lumazine binding domain AMS64_18920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AMS64_18920 PF01872 RibD C-terminal domain AMS64_18925 PF03477 ATP cone domain AMS64_18930 PF00464 Serine hydroxymethyltransferase AMS64_18940 PF00672 HAMP domain AMS64_18940 PF01627 Hpt domain AMS64_18940 PF00072 Response regulator receiver domain AMS64_18940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_18940 PF00512 His Kinase A (phospho-acceptor) domain AMS64_18945 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AMS64_18955 PF00072 Response regulator receiver domain AMS64_18955 PF00486 Transcriptional regulatory protein, C terminal AMS64_18960 PF03264 NapC/NirT cytochrome c family, N-terminal region AMS64_18965 PF18364 Molybdopterin oxidoreductase N-terminal domain AMS64_18965 PF01568 Molydopterin dinucleotide binding domain AMS64_18965 PF00384 Molybdopterin oxidoreductase AMS64_18970 PF02613 Nitrate reductase delta subunit AMS64_18980 PF03707 Bacterial signalling protein N terminal repeat AMS64_18980 PF00990 Diguanylate cyclase, GGDEF domain AMS64_18980 PF00563 EAL domain AMS64_18990 PF16177 Acetyl-coenzyme A synthetase N-terminus AMS64_18990 PF00501 AMP-binding enzyme AMS64_18990 PF13193 AMP-binding enzyme C-terminal domain AMS64_18995 PF01220 Dehydroquinase class II AMS64_19000 PF00364 Biotin-requiring enzyme AMS64_19005 PF00289 Biotin carboxylase, N-terminal domain AMS64_19005 PF02785 Biotin carboxylase C-terminal domain AMS64_19005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AMS64_19015 PF00474 Sodium:solute symporter family AMS64_19020 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AMS64_19020 PF02378 Phosphotransferase system, EIIC AMS64_19020 PF00367 phosphotransferase system, EIIB AMS64_19025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_19025 PF03466 LysR substrate binding domain AMS64_19030 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_19030 PF00107 Zinc-binding dehydrogenase AMS64_19040 PF12464 Maltose acetyltransferase AMS64_19040 PF14602 Hexapeptide repeat of succinyl-transferase AMS64_19045 PF00881 Nitroreductase family AMS64_19050 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AMS64_19050 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_19055 PF01343 Peptidase family S49 AMS64_19060 PF03734 L,D-transpeptidase catalytic domain AMS64_19060 PF17969 L,D-transpeptidase C-terminal domain AMS64_19075 PF02472 Biopolymer transport protein ExbD/TolR AMS64_19080 PF01618 MotA/TolQ/ExbB proton channel family AMS64_19085 PF01618 MotA/TolQ/ExbB proton channel family AMS64_19095 PF00593 TonB dependent receptor AMS64_19095 PF07715 TonB-dependent Receptor Plug Domain AMS64_19100 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_19105 PF12911 N-terminal TM domain of oligopeptide transport permease C AMS64_19105 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_19115 PF00005 ABC transporter AMS64_19115 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_19120 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AMS64_19120 PF00005 ABC transporter AMS64_19130 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AMS64_19130 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AMS64_19130 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AMS64_19135 PF01370 NAD dependent epimerase/dehydratase family AMS64_19140 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) AMS64_19170 PF12848 ABC transporter AMS64_19170 PF00005 ABC transporter AMS64_19180 PF00860 Permease family AMS64_19185 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS64_19190 PF00749 tRNA synthetases class I (E and Q), catalytic domain AMS64_19195 PF00672 HAMP domain AMS64_19195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_19205 PF00313 'Cold-shock' DNA-binding domain AMS64_19245 PF00929 Exonuclease AMS64_19250 PF03193 RsgA GTPase AMS64_19255 PF02666 Phosphatidylserine decarboxylase AMS64_19260 PF09905 DNA-binding protein VF530 AMS64_19275 PF00171 Aldehyde dehydrogenase family AMS64_19280 PF01472 PUA domain AMS64_19280 PF00696 Amino acid kinase family AMS64_19285 PF07417 Sigma factor-binding transcriptional regulator Crl AMS64_19295 PF00156 Phosphoribosyl transferase domain AMS64_19300 PF07687 Peptidase dimerisation domain AMS64_19300 PF01546 Peptidase family M20/M25/M40 AMS64_19305 PF00226 DnaJ domain AMS64_19305 PF05099 Tellurite resistance protein TerB AMS64_19310 PF00483 Nucleotidyl transferase AMS64_19315 PF01636 Phosphotransferase enzyme family AMS64_19320 PF04453 LPS transport system D AMS64_19320 PF03968 OstA-like protein AMS64_19325 PF00639 PPIC-type PPIASE domain AMS64_19325 PF09312 SurA N-terminal domain AMS64_19330 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AMS64_19335 PF00398 Ribosomal RNA adenine dimethylase AMS64_19340 PF04379 ApaG domain AMS64_19345 PF00149 Calcineurin-like phosphoesterase AMS64_19360 PF00296 Luciferase-like monooxygenase AMS64_19375 PF01018 GTP1/OBG AMS64_19375 PF01926 50S ribosome-binding GTPase AMS64_19380 PF01016 Ribosomal L27 protein AMS64_19390 PF00348 Polyprenyl synthetase AMS64_19395 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) AMS64_19400 PF01145 SPFH domain / Band 7 family AMS64_19405 PF12221 Bacterial membrane protein N terminal AMS64_19405 PF01145 SPFH domain / Band 7 family AMS64_19410 PF16360 GTP-binding GTPase Middle Region AMS64_19410 PF13167 GTP-binding GTPase N-terminal AMS64_19410 PF01926 50S ribosome-binding GTPase AMS64_19415 PF17209 Hfq protein AMS64_19425 PF01119 DNA mismatch repair protein, C-terminal domain AMS64_19425 PF08676 MutL C terminal dimerisation domain AMS64_19430 PF08676 MutL C terminal dimerisation domain AMS64_19430 PF01119 DNA mismatch repair protein, C-terminal domain AMS64_19435 PF01520 N-acetylmuramoyl-L-alanine amidase AMS64_19440 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AMS64_19445 PF01256 Carbohydrate kinase AMS64_19445 PF03853 YjeF-related protein N-terminus AMS64_19450 PF08331 Domain of unknown function (DUF1730) AMS64_19455 PF00480 ROK family AMS64_19465 PF09383 NIL domain AMS64_19465 PF00005 ABC transporter AMS64_19470 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_19475 PF03180 NLPA lipoprotein AMS64_19480 PF02357 Transcription termination factor nusG AMS64_19485 PF00672 HAMP domain AMS64_19485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_19485 PF12729 Four helix bundle sensory module for signal transduction AMS64_19495 PF13286 Phosphohydrolase-associated domain AMS64_19495 PF01966 HD domain AMS64_19500 PF01627 Hpt domain AMS64_19500 PF00989 PAS fold AMS64_19500 PF18415 Histidine kinase receptor ArcB trans-membrane domain AMS64_19500 PF00072 Response regulator receiver domain AMS64_19500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_19500 PF00512 His Kinase A (phospho-acceptor) domain AMS64_19520 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) AMS64_19525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_19525 PF03466 LysR substrate binding domain AMS64_19535 PF01259 SAICAR synthetase AMS64_19540 PF06804 NlpB/DapX lipoprotein AMS64_19545 PF00701 Dihydrodipicolinate synthetase family AMS64_19550 PF01842 ACT domain AMS64_19555 PF00578 AhpC/TSA family AMS64_19560 PF03887 YfbU domain AMS64_19565 PF04217 Protein of unknown function, DUF412 AMS64_19570 PF00871 Acetokinase family AMS64_19575 PF01515 Phosphate acetyl/butaryl transferase AMS64_19575 PF07085 DRTGG domain AMS64_19585 PF00483 Nucleotidyl transferase AMS64_19590 PF00854 POT family AMS64_19595 PF00072 Response regulator receiver domain AMS64_19625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AMS64_19630 PF02321 Outer membrane efflux protein AMS64_19635 PF01207 Dihydrouridine synthase (Dus) AMS64_19640 PF02954 Bacterial regulatory protein, Fis family AMS64_19660 PF10369 Small subunit of acetolactate synthase AMS64_19665 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS64_19665 PF00205 Thiamine pyrophosphate enzyme, central domain AMS64_19665 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS64_19675 PF01569 PAP2 superfamily AMS64_19685 PF08502 LeuA allosteric (dimerisation) domain AMS64_19685 PF00682 HMGL-like AMS64_19690 PF00180 Isocitrate/isopropylmalate dehydrogenase AMS64_19695 PF00330 Aconitase family (aconitate hydratase) AMS64_19700 PF00694 Aconitase C-terminal domain AMS64_19720 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_19725 PF00005 ABC transporter AMS64_19730 PF13638 PIN domain AMS64_19730 PF02562 PhoH-like protein AMS64_19740 PF02867 Ribonucleotide reductase, barrel domain AMS64_19740 PF08343 Ribonucleotide reductase N-terminal AMS64_19740 PF00317 Ribonucleotide reductase, all-alpha domain AMS64_19770 PF00990 Diguanylate cyclase, GGDEF domain AMS64_19770 PF03707 Bacterial signalling protein N terminal repeat AMS64_19770 PF00563 EAL domain AMS64_19780 PF00118 TCP-1/cpn60 chaperonin family AMS64_19785 PF00166 Chaperonin 10 Kd subunit AMS64_19795 PF04186 FxsA cytoplasmic membrane protein AMS64_19800 PF10415 Fumarase C C-terminus AMS64_19800 PF00206 Lyase AMS64_19805 PF03605 Anaerobic c4-dicarboxylate membrane transporter AMS64_19810 PF00814 Glycoprotease family AMS64_19815 PF01165 Ribosomal protein S21 AMS64_19820 PF09424 Yqey-like protein AMS64_19825 PF01807 CHC2 zinc finger AMS64_19825 PF08275 DNA primase catalytic core, N-terminal domain AMS64_19825 PF10410 DnaB-helicase binding domain of primase AMS64_19825 PF08278 DNA primase DnaG DnaB-binding AMS64_19830 PF00140 Sigma-70 factor, region 1.2 AMS64_19830 PF04545 Sigma-70, region 4 AMS64_19830 PF04542 Sigma-70 region 2 AMS64_19830 PF04546 Sigma-70, non-essential region AMS64_19830 PF03979 Sigma-70 factor, region 1.1 AMS64_19830 PF04539 Sigma-70 region 3 AMS64_19850 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AMS64_19850 PF02843 Phosphoribosylglycinamide synthetase, C domain AMS64_19850 PF02844 Phosphoribosylglycinamide synthetase, N domain AMS64_19855 PF01808 AICARFT/IMPCHase bienzyme AMS64_19855 PF02142 MGS-like domain AMS64_19860 PF13411 MerR HTH family regulatory protein AMS64_19865 PF03889 Alternative ribosome-rescue factor A AMS64_19875 PF04055 Radical SAM superfamily AMS64_19875 PF06969 HemN C-terminal domain AMS64_19880 PF01725 Ham1 family AMS64_19885 PF07690 Major Facilitator Superfamily AMS64_19890 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AMS64_19890 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AMS64_19900 PF13302 Acetyltransferase (GNAT) domain AMS64_19905 PF13302 Acetyltransferase (GNAT) domain AMS64_19910 PF07504 Fungalysin/Thermolysin Propeptide Motif AMS64_19910 PF03413 Peptidase propeptide and YPEB domain AMS64_19910 PF04151 Bacterial pre-peptidase C-terminal domain AMS64_19910 PF01447 Thermolysin metallopeptidase, catalytic domain AMS64_19910 PF02868 Thermolysin metallopeptidase, alpha-helical domain AMS64_19915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_19915 PF03466 LysR substrate binding domain AMS64_19920 PF07690 Major Facilitator Superfamily AMS64_19925 PF00583 Acetyltransferase (GNAT) family AMS64_19930 PF16658 Class II release factor RF3, C-terminal domain AMS64_19930 PF03144 Elongation factor Tu domain 2 AMS64_19930 PF00009 Elongation factor Tu GTP binding domain AMS64_19940 PF00990 Diguanylate cyclase, GGDEF domain AMS64_19940 PF00072 Response regulator receiver domain AMS64_19945 PF05762 VWA domain containing CoxE-like protein AMS64_19950 PF17868 AAA lid domain AMS64_19950 PF12592 Protein of unknown function (DUF3763) AMS64_19950 PF07728 AAA domain (dynein-related subfamily) AMS64_19960 PF00583 Acetyltransferase (GNAT) family AMS64_19960 PF13673 Acetyltransferase (GNAT) domain AMS64_19970 PF00501 AMP-binding enzyme AMS64_19975 PF04262 Glutamate-cysteine ligase AMS64_19980 PF05193 Peptidase M16 inactive domain AMS64_19980 PF00675 Insulinase (Peptidase family M16) AMS64_19985 PF09335 SNARE associated Golgi protein AMS64_19990 PF08240 Alcohol dehydrogenase GroES-like domain AMS64_19990 PF00107 Zinc-binding dehydrogenase AMS64_20010 PF00175 Oxidoreductase NAD-binding domain AMS64_20010 PF00970 Oxidoreductase FAD-binding domain AMS64_20015 PF01281 Ribosomal protein L9, N-terminal domain AMS64_20015 PF03948 Ribosomal protein L9, C-terminal domain AMS64_20020 PF01084 Ribosomal protein S18 AMS64_20025 PF01250 Ribosomal protein S6 AMS64_20030 PF01566 Natural resistance-associated macrophage protein AMS64_20035 PF01411 tRNA synthetases class II (A) AMS64_20035 PF02272 DHHA1 domain AMS64_20035 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AMS64_20045 PF00216 Bacterial DNA-binding protein AMS64_20050 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ AMS64_20055 PF07238 PilZ domain AMS64_20060 PF18073 Rubredoxin metal binding domain AMS64_20075 PF18429 Domain of unknown function (DUF5609) AMS64_20085 PF01048 Phosphorylase superfamily AMS64_20090 PF01676 Metalloenzyme superfamily AMS64_20095 PF00591 Glycosyl transferase family, a/b domain AMS64_20095 PF02885 Glycosyl transferase family, helical bundle domain AMS64_20095 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AMS64_20100 PF01791 DeoC/LacD family aldolase AMS64_20110 PF01773 Na+ dependent nucleoside transporter N-terminus AMS64_20110 PF07662 Na+ dependent nucleoside transporter C-terminus AMS64_20110 PF07670 Nucleoside recognition AMS64_20115 PF01026 TatD related DNase AMS64_20120 PF07963 Prokaryotic N-terminal methylation motif AMS64_20120 PF14245 Type IV pilin PilA AMS64_20125 PF02664 S-Ribosylhomocysteinase (LuxS) AMS64_20135 PF00543 Nitrogen regulatory protein P-II AMS64_20140 PF02540 NAD synthase AMS64_20140 PF00795 Carbon-nitrogen hydrolase AMS64_20155 PF05567 Neisseria PilC beta-propeller domain AMS64_20170 PF00114 Pilin (bacterial filament) AMS64_20170 PF07963 Prokaryotic N-terminal methylation motif AMS64_20175 PF02401 LytB protein AMS64_20180 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AMS64_20185 PF01252 Signal peptidase (SPase) II AMS64_20190 PF06827 Zinc finger found in FPG and IleRS AMS64_20190 PF00133 tRNA synthetases class I (I, L, M and V) AMS64_20190 PF08264 Anticodon-binding domain of tRNA AMS64_20195 PF01687 Riboflavin kinase AMS64_20195 PF06574 FAD synthetase AMS64_20200 PF03023 Lipid II flippase MurJ AMS64_20205 PF01649 Ribosomal protein S20 AMS64_20210 PF01022 Bacterial regulatory protein, arsR family AMS64_20215 PF03466 LysR substrate binding domain AMS64_20215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_20225 PF06965 Na+/H+ antiporter 1 AMS64_20230 PF00303 Thymidylate synthase AMS64_20235 PF01790 Prolipoprotein diacylglyceryl transferase AMS64_20240 PF01590 GAF domain AMS64_20240 PF05524 PEP-utilising enzyme, N-terminal AMS64_20240 PF02896 PEP-utilising enzyme, TIM barrel domain AMS64_20240 PF00391 PEP-utilising enzyme, mobile domain AMS64_20245 PF00293 NUDIX domain AMS64_20250 PF02976 DNA mismatch repair enzyme MutH AMS64_20260 PF01245 Ribosomal protein L19 AMS64_20265 PF01746 tRNA (Guanine-1)-methyltransferase AMS64_20270 PF01782 RimM N-terminal domain AMS64_20270 PF05239 PRC-barrel domain AMS64_20275 PF00886 Ribosomal protein S16 AMS64_20280 PF02978 Signal peptide binding domain AMS64_20280 PF00448 SRP54-type protein, GTPase domain AMS64_20280 PF02881 SRP54-type protein, helical bundle domain AMS64_20285 PF01578 Cytochrome C assembly protein AMS64_20290 PF00571 CBS domain AMS64_20290 PF03471 Transporter associated domain AMS64_20290 PF01595 Cyclin M transmembrane N-terminal domain AMS64_20295 PF02082 Transcriptional regulator AMS64_20300 PF00970 Oxidoreductase FAD-binding domain AMS64_20300 PF00042 Globin AMS64_20300 PF00175 Oxidoreductase NAD-binding domain AMS64_20305 PF08238 Sel1 repeat AMS64_20310 PF00056 lactate/malate dehydrogenase, NAD binding domain AMS64_20310 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AMS64_20315 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_20320 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_20325 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_20330 PF00005 ABC transporter AMS64_20335 PF02863 Arginine repressor, C-terminal domain AMS64_20335 PF01316 Arginine repressor, DNA binding domain AMS64_20340 PF04261 Dyp-type peroxidase family AMS64_20345 PF08402 TOBE domain AMS64_20345 PF00005 ABC transporter AMS64_20355 PF13416 Bacterial extracellular solute-binding protein AMS64_20360 PF00543 Nitrogen regulatory protein P-II AMS64_20365 PF00472 RF-1 domain AMS64_20370 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AMS64_20370 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AMS64_20380 PF03883 Peroxide stress protein YaaA AMS64_20385 PF00437 Type II/IV secretion system protein AMS64_20390 PF00437 Type II/IV secretion system protein AMS64_20395 PF01168 Alanine racemase, N-terminal domain AMS64_20400 PF03807 NADP oxidoreductase coenzyme F420-dependent AMS64_20400 PF14748 Pyrroline-5-carboxylate reductase dimerisation AMS64_20405 PF02325 YGGT family AMS64_20410 PF02594 Uncharacterised ACR, YggU family COG1872 AMS64_20420 PF01773 Na+ dependent nucleoside transporter N-terminus AMS64_20420 PF07662 Na+ dependent nucleoside transporter C-terminus AMS64_20420 PF07670 Nucleoside recognition AMS64_20425 PF03466 LysR substrate binding domain AMS64_20425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_20430 PF00255 Glutathione peroxidase AMS64_20440 PF02595 Glycerate kinase family AMS64_20445 PF02447 GntP family permease AMS64_20450 PF13556 PucR C-terminal helix-turn-helix domain AMS64_20450 PF17853 GGDEF-like domain AMS64_20450 PF05651 Putative sugar diacid recognition AMS64_20455 PF06062 Uncharacterised protein family (UPF0231) AMS64_20475 PF03372 Endonuclease/Exonuclease/phosphatase family AMS64_20485 PF00270 DEAD/DEAH box helicase AMS64_20485 PF00271 Helicase conserved C-terminal domain AMS64_20495 PF08534 Redoxin AMS64_20500 PF00403 Heavy-metal-associated domain AMS64_20505 PF17967 Pullulanase N2 domain AMS64_20505 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AMS64_20505 PF11852 Domain of unknown function (DUF3372) AMS64_20505 PF03714 Bacterial pullanase-associated domain AMS64_20505 PF18494 Pullulanase Ins domain AMS64_20520 PF02583 Metal-sensitive transcriptional repressor AMS64_20525 PF00155 Aminotransferase class I and II AMS64_20530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_20530 PF03466 LysR substrate binding domain AMS64_20540 PF04055 Radical SAM superfamily AMS64_20545 PF11230 Protein of unknown function (DUF3029) AMS64_20570 PF00970 Oxidoreductase FAD-binding domain AMS64_20570 PF00111 2Fe-2S iron-sulfur cluster binding domain AMS64_20570 PF00175 Oxidoreductase NAD-binding domain AMS64_20585 PF00535 Glycosyl transferase family 2 AMS64_20590 PF14883 Hypothetical glycosyl hydrolase family 13 AMS64_20590 PF01522 Polysaccharide deacetylase AMS64_20600 PF14488 Domain of unknown function (DUF4434) AMS64_20605 PF13283 Bacteriophage N adsorption protein A C-term AMS64_20610 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMS64_20610 PF13632 Glycosyl transferase family group 2 AMS64_20625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_20625 PF12729 Four helix bundle sensory module for signal transduction AMS64_20625 PF00672 HAMP domain AMS64_20630 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AMS64_20630 PF18416 N-acetylglucosamine binding protein domain 2 AMS64_20635 PF03466 LysR substrate binding domain AMS64_20635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_20640 PF12857 TOBE-like domain AMS64_20640 PF00005 ABC transporter AMS64_20645 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_20650 PF00528 Binding-protein-dependent transport system inner membrane component AMS64_20665 PF13194 Domain of unknown function (DUF4010) AMS64_20670 PF12464 Maltose acetyltransferase AMS64_20670 PF14602 Hexapeptide repeat of succinyl-transferase AMS64_20685 PF13419 Haloacid dehalogenase-like hydrolase AMS64_20690 PF00293 NUDIX domain AMS64_20695 PF00459 Inositol monophosphatase family AMS64_20700 PF03222 Tryptophan/tyrosine permease family AMS64_20705 PF01588 Putative tRNA binding domain AMS64_20715 PF01340 Met Apo-repressor, MetJ AMS64_20720 PF01053 Cys/Met metabolism PLP-dependent enzyme AMS64_20725 PF03447 Homoserine dehydrogenase, NAD binding domain AMS64_20725 PF00742 Homoserine dehydrogenase AMS64_20725 PF00696 Amino acid kinase family AMS64_20730 PF01384 Phosphate transporter family AMS64_20735 PF01865 Protein of unknown function DUF47 AMS64_20745 PF00701 Dihydrodipicolinate synthetase family AMS64_20750 PF05175 Methyltransferase small domain AMS64_20750 PF08468 Methyltransferase small domain N-terminal AMS64_20755 PF00483 Nucleotidyl transferase AMS64_20760 PF00534 Glycosyl transferases group 1 AMS64_20760 PF08323 Starch synthase catalytic domain AMS64_20810 PF03553 Na+/H+ antiporter family AMS64_20815 PF01521 Iron-sulphur cluster biosynthesis AMS64_20825 PF00654 Voltage gated chloride channel AMS64_20830 PF00202 Aminotransferase class-III AMS64_20845 PF06965 Na+/H+ antiporter 1 AMS64_20845 PF13462 Thioredoxin AMS64_20880 PF01381 Helix-turn-helix AMS64_20880 PF07883 Cupin domain AMS64_20885 PF03594 Benzoate membrane transport protein AMS64_20895 PF02219 Methylenetetrahydrofolate reductase AMS64_20910 PF00672 HAMP domain AMS64_20910 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_20915 PF03922 OmpW family AMS64_20920 PF17158 Membrane-associated sensor, integral membrane domain AMS64_20920 PF00990 Diguanylate cyclase, GGDEF domain AMS64_20925 PF00005 ABC transporter AMS64_20925 PF17755 UvrA DNA-binding domain AMS64_20925 PF17760 UvrA interaction domain AMS64_20945 PF03783 Curli production assembly/transport component CsgG AMS64_20955 PF10627 Curli assembly protein CsgE AMS64_20960 PF00196 Bacterial regulatory proteins, luxR family AMS64_20965 PF00436 Single-strand binding protein family AMS64_20975 PF01545 Cation efflux family AMS64_20975 PF16916 Dimerisation domain of Zinc Transporter AMS64_20985 PF00313 'Cold-shock' DNA-binding domain AMS64_20990 PF00860 Permease family AMS64_20995 PF02733 Dak1 domain AMS64_21000 PF02734 DAK2 domain AMS64_21005 PF03610 PTS system fructose IIA component AMS64_21005 PF00391 PEP-utilising enzyme, mobile domain AMS64_21005 PF00381 PTS HPr component phosphorylation site AMS64_21005 PF05524 PEP-utilising enzyme, N-terminal AMS64_21010 PF00465 Iron-containing alcohol dehydrogenase AMS64_21015 PF00989 PAS fold AMS64_21015 PF00158 Sigma-54 interaction domain AMS64_21015 PF02954 Bacterial regulatory protein, Fis family AMS64_21025 PF01594 AI-2E family transporter AMS64_21030 PF00293 NUDIX domain AMS64_21040 PF01479 S4 domain AMS64_21045 PF01430 Hsp33 protein AMS64_21055 PF00392 Bacterial regulatory proteins, gntR family AMS64_21060 PF00557 Metallopeptidase family M24 AMS64_21060 PF01321 Creatinase/Prolidase N-terminal domain AMS64_21065 PF11756 Nitrous oxide-stimulated promoter AMS64_21070 PF00583 Acetyltransferase (GNAT) family AMS64_21075 PF05433 Glycine zipper 2TM domain AMS64_21080 PF00909 Ammonium Transporter Family AMS64_21085 PF00990 Diguanylate cyclase, GGDEF domain AMS64_21095 PF06055 Exopolysaccharide synthesis, ExoD AMS64_21105 PF00990 Diguanylate cyclase, GGDEF domain AMS64_21105 PF17151 Periplasmic sensor domain AMS64_21115 PF00132 Bacterial transferase hexapeptide (six repeats) AMS64_21135 PF04055 Radical SAM superfamily AMS64_21135 PF06968 Biotin and Thiamin Synthesis associated domain AMS64_21140 PF05690 Thiazole biosynthesis protein ThiG AMS64_21150 PF00899 ThiF family AMS64_21155 PF02581 Thiamine monophosphate synthase AMS64_21160 PF01964 Radical SAM ThiC family AMS64_21160 PF13667 ThiC-associated domain AMS64_21170 PF03440 Aerolysin/Pertussis toxin (APT) domain AMS64_21170 PF01117 Aerolysin toxin AMS64_21185 PF00072 Response regulator receiver domain AMS64_21185 PF00486 Transcriptional regulatory protein, C terminal AMS64_21195 PF08443 RimK-like ATP-grasp domain AMS64_21195 PF18030 RimK PreATP-grasp domain AMS64_21200 PF02310 B12 binding domain AMS64_21200 PF02965 Vitamin B12 dependent methionine synthase, activation domain AMS64_21200 PF02574 Homocysteine S-methyltransferase AMS64_21200 PF00809 Pterin binding enzyme AMS64_21200 PF02607 B12 binding domain AMS64_21205 PF00999 Sodium/hydrogen exchanger family AMS64_21210 PF14659 Phage integrase, N-terminal SAM-like domain AMS64_21210 PF00589 Phage integrase family AMS64_21210 PF13356 Arm DNA-binding domain AMS64_21235 PF14338 Mrr N-terminal domain AMS64_21235 PF04471 Restriction endonuclease AMS64_21245 PF12161 HsdM N-terminal domain AMS64_21245 PF02384 N-6 DNA Methylase AMS64_21250 PF01420 Type I restriction modification DNA specificity domain AMS64_21290 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) AMS64_21300 PF07690 Major Facilitator Superfamily AMS64_21305 PF01914 MarC family integral membrane protein AMS64_21315 PF01523 Putative modulator of DNA gyrase AMS64_21320 PF00795 Carbon-nitrogen hydrolase AMS64_21330 PF13116 Protein of unknown function AMS64_21330 PF13502 AsmA-like C-terminal region AMS64_21335 PF00575 S1 RNA binding domain AMS64_21335 PF10150 Ribonuclease E/G family AMS64_21340 PF02545 Maf-like protein AMS64_21345 PF04093 rod shape-determining protein MreD AMS64_21350 PF04085 rod shape-determining protein MreC AMS64_21380 PF14245 Type IV pilin PilA AMS64_21380 PF07963 Prokaryotic N-terminal methylation motif AMS64_21385 PF00114 Pilin (bacterial filament) AMS64_21385 PF07963 Prokaryotic N-terminal methylation motif AMS64_21400 PF00482 Type II secretion system (T2SS), protein F AMS64_21405 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain AMS64_21405 PF00437 Type II/IV secretion system protein AMS64_21420 PF00263 Bacterial type II and III secretion system protein AMS64_21420 PF03958 Bacterial type II/III secretion system short domain AMS64_21450 PF00563 EAL domain AMS64_21450 PF17157 Gammaproteobacterial periplasmic sensor domain AMS64_21450 PF00990 Diguanylate cyclase, GGDEF domain AMS64_21455 PF12792 CSS motif domain associated with EAL AMS64_21455 PF00563 EAL domain AMS64_21460 PF01699 Sodium/calcium exchanger protein AMS64_21465 PF00221 Aromatic amino acid lyase AMS64_21470 PF17392 Urocanase C-terminal domain AMS64_21470 PF01175 Urocanase Rossmann-like domain AMS64_21470 PF17391 Urocanase N-terminal domain AMS64_21475 PF00491 Arginase family AMS64_21480 PF01979 Amidohydrolase family AMS64_21485 PF00392 Bacterial regulatory proteins, gntR family AMS64_21485 PF07702 UTRA domain AMS64_21490 PF00484 Carbonic anhydrase AMS64_21495 PF00140 Sigma-70 factor, region 1.2 AMS64_21495 PF04542 Sigma-70 region 2 AMS64_21495 PF04545 Sigma-70, region 4 AMS64_21500 PF18075 FtsX extracellular domain AMS64_21505 PF00005 ABC transporter AMS64_21510 PF02881 SRP54-type protein, helical bundle domain AMS64_21510 PF00448 SRP54-type protein, GTPase domain AMS64_21535 PF02254 TrkA-N domain AMS64_21535 PF00999 Sodium/hydrogen exchanger family AMS64_21540 PF02525 Flavodoxin-like fold AMS64_21550 PF00106 short chain dehydrogenase AMS64_21565 PF00326 Prolyl oligopeptidase family AMS64_21565 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AMS64_21580 PF13091 PLD-like domain AMS64_21585 PF01464 Transglycosylase SLT domain AMS64_21585 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_21595 PF02416 mttA/Hcf106 family AMS64_21600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_21600 PF03466 LysR substrate binding domain AMS64_21605 PF01914 MarC family integral membrane protein AMS64_21610 PF10678 Protein of unknown function (DUF2492) AMS64_21615 PF00375 Sodium:dicarboxylate symporter family AMS64_21625 PF03466 LysR substrate binding domain AMS64_21625 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_21630 PF13533 Biotin-lipoyl like AMS64_21640 PF07947 YhhN family AMS64_21650 PF00440 Bacterial regulatory proteins, tetR family AMS64_21690 PF03144 Elongation factor Tu domain 2 AMS64_21690 PF00009 Elongation factor Tu GTP binding domain AMS64_21690 PF03143 Elongation factor Tu C-terminal domain AMS64_21695 PF00679 Elongation factor G C-terminus AMS64_21695 PF14492 Elongation Factor G, domain II AMS64_21695 PF03764 Elongation factor G, domain IV AMS64_21695 PF03144 Elongation factor Tu domain 2 AMS64_21695 PF00009 Elongation factor Tu GTP binding domain AMS64_21700 PF00177 Ribosomal protein S7p/S5e AMS64_21710 PF04077 DsrH like protein AMS64_21715 PF02635 DsrE/DsrF-like family AMS64_21720 PF02635 DsrE/DsrF-like family AMS64_21725 PF01042 Endoribonuclease L-PSP AMS64_21730 PF08348 YheO-like PAS domain AMS64_21730 PF13309 HTH domain AMS64_21735 PF05000 RNA polymerase Rpb1, domain 4 AMS64_21735 PF04998 RNA polymerase Rpb1, domain 5 AMS64_21735 PF04997 RNA polymerase Rpb1, domain 1 AMS64_21735 PF00623 RNA polymerase Rpb1, domain 2 AMS64_21735 PF04983 RNA polymerase Rpb1, domain 3 AMS64_21740 PF00562 RNA polymerase Rpb2, domain 6 AMS64_21740 PF10385 RNA polymerase beta subunit external 1 domain AMS64_21740 PF04565 RNA polymerase Rpb2, domain 3 AMS64_21740 PF04563 RNA polymerase beta subunit AMS64_21740 PF04560 RNA polymerase Rpb2, domain 7 AMS64_21740 PF04561 RNA polymerase Rpb2, domain 2 AMS64_21745 PF16320 Ribosomal protein L7/L12 dimerisation domain AMS64_21745 PF00542 Ribosomal protein L7/L12 C-terminal domain AMS64_21750 PF00466 Ribosomal protein L10 AMS64_21755 PF00687 Ribosomal protein L1p/L10e family AMS64_21760 PF00298 Ribosomal protein L11, RNA binding domain AMS64_21760 PF03946 Ribosomal protein L11, N-terminal domain AMS64_21765 PF02357 Transcription termination factor nusG AMS64_21765 PF00467 KOW motif AMS64_21770 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AMS64_21780 PF00009 Elongation factor Tu GTP binding domain AMS64_21780 PF03144 Elongation factor Tu domain 2 AMS64_21780 PF03143 Elongation factor Tu C-terminal domain AMS64_21795 PF00485 Phosphoribulokinase / Uridine kinase family AMS64_21800 PF02237 Biotin protein ligase C terminal domain AMS64_21800 PF03099 Biotin/lipoate A/B protein ligase family AMS64_21800 PF08279 HTH domain AMS64_21805 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AMS64_21805 PF01565 FAD binding domain AMS64_21810 PF02254 TrkA-N domain AMS64_21810 PF02080 TrkA-C domain AMS64_21815 PF02386 Cation transport protein AMS64_21835 PF01751 Toprim domain AMS64_21835 PF01131 DNA topoisomerase AMS64_21845 PF00512 His Kinase A (phospho-acceptor) domain AMS64_21845 PF00497 Bacterial extracellular solute-binding proteins, family 3 AMS64_21845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_21850 PF03264 NapC/NirT cytochrome c family, N-terminal region AMS64_21855 PF00384 Molybdopterin oxidoreductase AMS64_21855 PF18364 Molybdopterin oxidoreductase N-terminal domain AMS64_21855 PF01568 Molydopterin dinucleotide binding domain AMS64_21865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_21865 PF08918 PhoQ Sensor AMS64_21870 PF00072 Response regulator receiver domain AMS64_21870 PF00486 Transcriptional regulatory protein, C terminal AMS64_21885 PF01794 Ferric reductase like transmembrane component AMS64_21890 PF00174 Oxidoreductase molybdopterin binding domain AMS64_21895 PF06496 Protein of unknown function (DUF1097) AMS64_21900 PF00158 Sigma-54 interaction domain AMS64_21900 PF00072 Response regulator receiver domain AMS64_21910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_21910 PF00512 His Kinase A (phospho-acceptor) domain AMS64_21925 PF00571 CBS domain AMS64_21930 PF10063 Uncharacterized integral membrane protein (DUF2301) AMS64_21940 PF01037 Lrp/AsnC ligand binding domain AMS64_21945 PF03590 Aspartate-ammonia ligase AMS64_21950 PF07724 AAA domain (Cdc48 subfamily) AMS64_21950 PF10431 C-terminal, D2-small domain, of ClpB protein AMS64_21950 PF00004 ATPase family associated with various cellular activities (AAA) AMS64_21950 PF02861 Clp amino terminal domain, pathogenicity island component AMS64_21950 PF17871 AAA lid domain AMS64_21960 PF00849 RNA pseudouridylate synthase AMS64_21960 PF01479 S4 domain AMS64_21965 PF13525 Outer membrane lipoprotein AMS64_21970 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AMS64_21970 PF07992 Pyridine nucleotide-disulphide oxidoreductase AMS64_21975 PF00375 Sodium:dicarboxylate symporter family AMS64_21980 PF03313 Serine dehydratase alpha chain AMS64_21985 PF08348 YheO-like PAS domain AMS64_21985 PF13309 HTH domain AMS64_21995 PF00589 Phage integrase family AMS64_21995 PF02899 Phage integrase, N-terminal SAM-like domain AMS64_22010 PF01726 LexA DNA binding domain AMS64_22010 PF00717 Peptidase S24-like AMS64_22175 PF02233 NAD(P) transhydrogenase beta subunit AMS64_22180 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AMS64_22180 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch AMS64_22180 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AMS64_22185 PF00465 Iron-containing alcohol dehydrogenase AMS64_22190 PF06719 AraC-type transcriptional regulator N-terminus AMS64_22190 PF12833 Helix-turn-helix domain AMS64_22195 PF08212 Lipocalin-like domain AMS64_22200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_22200 PF02743 Cache domain AMS64_22200 PF00672 HAMP domain AMS64_22210 PF03466 LysR substrate binding domain AMS64_22210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_22225 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS64_22225 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS64_22230 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain AMS64_22230 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain AMS64_22235 PF02863 Arginine repressor, C-terminal domain AMS64_22235 PF01316 Arginine repressor, DNA binding domain AMS64_22240 PF03606 C4-dicarboxylate anaerobic carrier AMS64_22245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AMS64_22245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AMS64_22250 PF00696 Amino acid kinase family AMS64_22270 PF04055 Radical SAM superfamily AMS64_22270 PF06969 HemN C-terminal domain AMS64_22275 PF10675 Protein of unknown function (DUF2489) AMS64_22280 PF04220 Der GTPase activator (YihI) AMS64_22290 PF00034 Cytochrome c AMS64_22295 PF01926 50S ribosome-binding GTPase AMS64_22305 PF01488 Shikimate / quinate 5-dehydrogenase AMS64_22305 PF08501 Shikimate dehydrogenase substrate binding domain AMS64_22305 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AMS64_22310 PF01218 Coproporphyrinogen III oxidase AMS64_22315 PF01300 Telomere recombination AMS64_22320 PF00731 AIR carboxylase AMS64_22325 PF01396 Topoisomerase DNA binding C4 zinc finger AMS64_22330 PF04361 Protein of unknown function (DUF494) AMS64_22335 PF02481 DNA recombination-mediator protein A AMS64_22335 PF17782 DprA winged helix domain AMS64_22340 PF01476 LysM domain AMS64_22345 PF01327 Polypeptide deformylase AMS64_22350 PF00551 Formyl transferase AMS64_22350 PF02911 Formyl transferase, C-terminal domain AMS64_22355 PF01029 NusB family AMS64_22355 PF01189 16S rRNA methyltransferase RsmB/F AMS64_22360 PF02080 TrkA-C domain AMS64_22360 PF02254 TrkA-N domain AMS64_22365 PF02386 Cation transport protein AMS64_22375 PF00120 Glutamine synthetase, catalytic domain AMS64_22375 PF03951 Glutamine synthetase, beta-Grasp domain AMS64_22385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AMS64_22385 PF00512 His Kinase A (phospho-acceptor) domain AMS64_22385 PF00989 PAS fold AMS64_22390 PF00158 Sigma-54 interaction domain AMS64_22390 PF02954 Bacterial regulatory protein, Fis family AMS64_22390 PF00072 Response regulator receiver domain AMS64_22395 PF00962 Adenosine/AMP deaminase AMS64_22400 PF02646 RmuC family AMS64_22415 PF02082 Transcriptional regulator AMS64_22425 PF03466 LysR substrate binding domain AMS64_22425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AMS64_22430 PF02540 NAD synthase AMS64_22430 PF00117 Glutamine amidotransferase class-I AMS64_22430 PF00958 GMP synthase C terminal domain AMS64_22435 PF00171 Aldehyde dehydrogenase family AMS64_22440 PF00202 Aminotransferase class-III AMS64_22445 PF01381 Helix-turn-helix AMS64_22445 PF07883 Cupin domain AMS64_22450 PF00171 Aldehyde dehydrogenase family AMS64_22455 PF00892 EamA-like transporter family AMS64_22460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AMS64_22465 PF04143 Sulphur transport AMS64_22470 PF00691 OmpA family AMS64_22470 PF01389 OmpA-like transmembrane domain AMS64_22475 PF00291 Pyridoxal-phosphate dependent enzyme AMS64_22475 PF00585 C-terminal regulatory domain of Threonine dehydratase AMS64_22480 PF00920 Dehydratase family AMS64_22485 PF01063 Amino-transferase class IV AMS64_22495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AMS64_22495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AMS64_22495 PF00205 Thiamine pyrophosphate enzyme, central domain AMS64_22510 PF12462 DNA helicase IV / RNA helicase N terminal AMS64_22510 PF13361 UvrD-like helicase C-terminal domain AMS64_22510 PF00580 UvrD/REP helicase N-terminal domain AMS64_22550 PF00665 Integrase core domain AMS64_22560 PF02371 Transposase IS116/IS110/IS902 family AMS64_22560 PF01548 Transposase AMS64_22565 PF00665 Integrase core domain AMS64_22575 PF01553 Acyltransferase AMS64_22580 PF01553 Acyltransferase AMS64_22585 PF04463 Protein of unknown function (DUF523) AMS64_22595 PF00857 Isochorismatase family AMS64_22600 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AMS64_22600 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AMS64_22605 PF01323 DSBA-like thioredoxin domain AMS64_22610 PF01636 Phosphotransferase enzyme family AMS64_22615 PF13746 4Fe-4S dicluster domain AMS64_22615 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AMS64_22615 PF12801 4Fe-4S binding domain AMS64_22620 PF06288 Protein of unknown function (DUF1040)