locus-tag class description CVS41_00015 PF03544 Gram-negative bacterial TonB protein C-terminal CVS41_00020 PF02472 Biopolymer transport protein ExbD/TolR CVS41_00025 PF01618 MotA/TolQ/ExbB proton channel family CVS41_00030 PF01618 MotA/TolQ/ExbB proton channel family CVS41_00040 PF03472 Autoinducer binding domain CVS41_00040 PF00196 Bacterial regulatory proteins, luxR family CVS41_00045 PF01380 SIS domain CVS41_00050 PF00455 DeoR C terminal sensor domain CVS41_00050 PF08220 DeoR-like helix-turn-helix domain CVS41_00055 PF00486 Transcriptional regulatory protein, C terminal CVS41_00055 PF00072 Response regulator receiver domain CVS41_00060 PF00512 His Kinase A (phospho-acceptor) domain CVS41_00060 PF00672 HAMP domain CVS41_00060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_00065 PF00905 Penicillin binding protein transpeptidase domain CVS41_00075 PF06123 Inner membrane protein CreD CVS41_00090 PF13439 Glycosyltransferase Family 4 CVS41_00090 PF00534 Glycosyl transferases group 1 CVS41_00120 PF13614 AAA domain CVS41_00120 PF13807 G-rich domain on putative tyrosine kinase CVS41_00120 PF02706 Chain length determinant protein CVS41_00135 PF02397 Bacterial sugar transferase CVS41_00140 PF12804 MobA-like NTP transferase domain CVS41_00140 PF14602 Hexapeptide repeat of succinyl-transferase CVS41_00140 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_00145 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CVS41_00145 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CVS41_00150 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS41_00150 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVS41_00155 PF00231 ATP synthase CVS41_00160 PF00306 ATP synthase alpha/beta chain, C terminal domain CVS41_00160 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVS41_00160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS41_00165 PF00213 ATP synthase delta (OSCP) subunit CVS41_00170 PF00430 ATP synthase B/B' CF(0) CVS41_00175 PF00137 ATP synthase subunit C CVS41_00180 PF00119 ATP synthase A chain CVS41_00190 PF17762 HTH domain found in ParB protein CVS41_00190 PF02195 ParB-like nuclease domain CVS41_00195 PF13614 AAA domain CVS41_00200 PF02527 rRNA small subunit methyltransferase G CVS41_00205 PF13932 GidA associated domain CVS41_00205 PF01134 Glucose inhibited division protein A CVS41_00210 PF00258 Flavodoxin CVS41_00215 PF00593 TonB dependent receptor CVS41_00215 PF07715 TonB-dependent Receptor Plug Domain CVS41_00220 PF00005 ABC transporter CVS41_00225 PF00005 ABC transporter CVS41_00230 PF01497 Periplasmic binding protein CVS41_00235 PF01032 FecCD transport family CVS41_00240 PF01926 50S ribosome-binding GTPase CVS41_00240 PF12631 MnmE helical domain CVS41_00240 PF10396 GTP-binding protein TrmE N-terminus CVS41_00245 PF14849 YidC periplasmic domain CVS41_00245 PF02096 60Kd inner membrane protein CVS41_00250 PF01809 Putative membrane protein insertion efficiency factor CVS41_00255 PF00825 Ribonuclease P CVS41_00260 PF00468 Ribosomal protein L34 CVS41_00270 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_00275 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_00280 PF08299 Bacterial dnaA protein helix-turn-helix CVS41_00280 PF00308 Bacterial dnaA protein CVS41_00280 PF11638 DnaA N-terminal domain CVS41_00285 PF02768 DNA polymerase III beta subunit, C-terminal domain CVS41_00285 PF00712 DNA polymerase III beta subunit, N-terminal domain CVS41_00285 PF02767 DNA polymerase III beta subunit, central domain CVS41_00290 PF02463 RecF/RecN/SMC N terminal domain CVS41_00295 PF00204 DNA gyrase B CVS41_00295 PF18053 DNA gyrase B subunit insert domain CVS41_00295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_00295 PF01751 Toprim domain CVS41_00295 PF00986 DNA gyrase B subunit, carboxyl terminus CVS41_00310 PF01965 DJ-1/PfpI family CVS41_00310 PF12833 Helix-turn-helix domain CVS41_00315 PF12706 Beta-lactamase superfamily domain CVS41_00320 PF00011 Hsp20/alpha crystallin family CVS41_00325 PF00011 Hsp20/alpha crystallin family CVS41_00330 PF00155 Aminotransferase class I and II CVS41_00345 PF07690 Major Facilitator Superfamily CVS41_00350 PF00072 Response regulator receiver domain CVS41_00350 PF00486 Transcriptional regulatory protein, C terminal CVS41_00355 PF02702 Osmosensitive K+ channel His kinase sensor domain CVS41_00355 PF00512 His Kinase A (phospho-acceptor) domain CVS41_00355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_00355 PF13492 GAF domain CVS41_00355 PF13493 Domain of unknown function (DUF4118) CVS41_00360 PF02669 K+-transporting ATPase, c chain CVS41_00370 PF03814 Potassium-transporting ATPase A subunit CVS41_00380 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_00380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS41_00385 PF00512 His Kinase A (phospho-acceptor) domain CVS41_00385 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_00385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_00390 PF00873 AcrB/AcrD/AcrF family CVS41_00395 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_00400 PF00440 Bacterial regulatory proteins, tetR family CVS41_00435 PF12146 Serine aminopeptidase, S33 CVS41_00440 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_00445 PF12105 SpoU, rRNA methylase, C-terminal CVS41_00445 PF00588 SpoU rRNA Methylase family CVS41_00450 PF02824 TGS domain CVS41_00450 PF04607 Region found in RelA / SpoT proteins CVS41_00450 PF13291 ACT domain CVS41_00455 PF01192 RNA polymerase Rpb6 CVS41_00460 PF00625 Guanylate kinase CVS41_00470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CVS41_00485 PF00892 EamA-like transporter family CVS41_00505 PF03466 LysR substrate binding domain CVS41_00505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_00510 PF00579 tRNA synthetases class I (W and Y) CVS41_00515 PF00582 Universal stress protein family CVS41_00525 PF07055 Enoyl reductase FAD binding domain CVS41_00525 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CVS41_00525 PF12241 Trans-2-enoyl-CoA reductase catalytic region CVS41_00530 PF00210 Ferritin-like domain CVS41_00540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_00540 PF06580 Histidine kinase CVS41_00540 PF07694 5TMR of 5TMR-LYT CVS41_00545 PF04397 LytTr DNA-binding domain CVS41_00545 PF00072 Response regulator receiver domain CVS41_00550 PF07690 Major Facilitator Superfamily CVS41_00555 PF02222 ATP-grasp domain CVS41_00555 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CVS41_00560 PF00731 AIR carboxylase CVS41_00575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_00575 PF03466 LysR substrate binding domain CVS41_00580 PF00593 TonB dependent receptor CVS41_00580 PF07715 TonB-dependent Receptor Plug Domain CVS41_00585 PF01177 Asp/Glu/Hydantoin racemase CVS41_00615 PF00899 ThiF family CVS41_00620 PF02657 Fe-S metabolism associated domain CVS41_00625 PF00266 Aminotransferase class-V CVS41_00630 PF13361 UvrD-like helicase C-terminal domain CVS41_00630 PF00580 UvrD/REP helicase N-terminal domain CVS41_00635 PF03707 Bacterial signalling protein N terminal repeat CVS41_00635 PF00563 EAL domain CVS41_00635 PF00990 Diguanylate cyclase, GGDEF domain CVS41_00640 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS41_00645 PF00107 Zinc-binding dehydrogenase CVS41_00645 PF08240 Alcohol dehydrogenase GroES-like domain CVS41_00650 PF00155 Aminotransferase class I and II CVS41_00655 PF08360 QacR-like protein, C-terminal region CVS41_00655 PF00440 Bacterial regulatory proteins, tetR family CVS41_00660 PF01370 NAD dependent epimerase/dehydratase family CVS41_00665 PF00534 Glycosyl transferases group 1 CVS41_00665 PF13439 Glycosyltransferase Family 4 CVS41_00675 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CVS41_00700 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term CVS41_00700 PF12833 Helix-turn-helix domain CVS41_00705 PF01810 LysE type translocator CVS41_00735 PF14001 YdfZ protein CVS41_00755 PF13361 UvrD-like helicase C-terminal domain CVS41_00755 PF00580 UvrD/REP helicase N-terminal domain CVS41_00760 PF01526 Tn3 transposase DDE domain CVS41_00760 PF13700 Domain of unknown function (DUF4158) CVS41_00765 PF00239 Resolvase, N terminal domain CVS41_00765 PF02796 Helix-turn-helix domain of resolvase CVS41_00770 PF08447 PAS fold CVS41_00770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_00800 PF00149 Calcineurin-like phosphoesterase CVS41_00800 PF02872 5'-nucleotidase, C-terminal domain CVS41_00810 PF03448 MgtE intracellular N domain CVS41_00810 PF01769 Divalent cation transporter CVS41_00810 PF00571 CBS domain CVS41_00815 PF10414 Sirohaem synthase dimerisation region CVS41_00815 PF14824 Sirohaem biosynthesis protein central CVS41_00815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS41_00820 PF01226 Formate/nitrite transporter CVS41_00825 PF13806 Rieske-like [2Fe-2S] domain CVS41_00830 PF04324 BFD-like [2Fe-2S] binding domain CVS41_00830 PF18267 Rubredoxin NAD+ reductase C-terminal domain CVS41_00830 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_00830 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS41_00830 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS41_00835 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_00835 PF10431 C-terminal, D2-small domain, of ClpB protein CVS41_00835 PF07724 AAA domain (Cdc48 subfamily) CVS41_00840 PF00227 Proteasome subunit CVS41_00850 PF03485 Arginyl tRNA synthetase N terminal domain CVS41_00850 PF05746 DALR anticodon binding domain CVS41_00850 PF00750 tRNA synthetases class I (R) CVS41_00860 PF04542 Sigma-70 region 2 CVS41_00860 PF04545 Sigma-70, region 4 CVS41_00870 PF02673 Bacitracin resistance protein BacA CVS41_00875 PF01263 Aldose 1-epimerase CVS41_00880 PF10509 Galactokinase galactose-binding signature CVS41_00880 PF08544 GHMP kinases C terminal CVS41_00880 PF00288 GHMP kinases N terminal domain CVS41_00885 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CVS41_00885 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CVS41_00890 PF16363 GDP-mannose 4,6 dehydratase CVS41_00895 PF00356 Bacterial regulatory proteins, lacI family CVS41_00900 PF02837 Glycosyl hydrolases family 2, sugar binding domain CVS41_00900 PF00703 Glycosyl hydrolases family 2 CVS41_00900 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CVS41_00900 PF16353 Domain of unknown function(DUF4981) CVS41_00900 PF02929 Beta galactosidase small chain CVS41_00905 PF13407 Periplasmic binding protein domain CVS41_00910 PF00005 ABC transporter CVS41_00915 PF02653 Branched-chain amino acid transport system / permease component CVS41_00920 PF00672 HAMP domain CVS41_00920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_00920 PF02743 Cache domain CVS41_00925 PF05958 tRNA (Uracil-5-)-methyltransferase CVS41_00940 PF00128 Alpha amylase, catalytic domain CVS41_00940 PF02903 Alpha amylase, N-terminal ig-like domain CVS41_00955 PF00012 Hsp70 protein CVS41_00960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_00960 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS41_00965 PF05981 CreA protein CVS41_00980 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVS41_00985 PF00120 Glutamine synthetase, catalytic domain CVS41_00990 PF00202 Aminotransferase class-III CVS41_00995 PF13416 Bacterial extracellular solute-binding protein CVS41_01000 PF13416 Bacterial extracellular solute-binding protein CVS41_01005 PF08402 TOBE domain CVS41_01005 PF00005 ABC transporter CVS41_01010 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_01015 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_01020 PF03475 3-alpha domain CVS41_01020 PF03473 MOSC domain CVS41_01035 PF03061 Thioesterase superfamily CVS41_01040 PF09382 RQC domain CVS41_01040 PF00270 DEAD/DEAH box helicase CVS41_01040 PF00570 HRDC domain CVS41_01040 PF16124 RecQ zinc-binding CVS41_01040 PF00271 Helicase conserved C-terminal domain CVS41_01045 PF00034 Cytochrome c CVS41_01050 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CVS41_01060 PF02592 Putative vitamin uptake transporter CVS41_01065 PF03737 Aldolase/RraA CVS41_01070 PF00672 HAMP domain CVS41_01070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_01080 PF01197 Ribosomal protein L31 CVS41_01085 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CVS41_01085 PF18074 Primosomal protein N C-terminal domain CVS41_01085 PF17764 3′ DNA-binding domain (3′BD) CVS41_01085 PF00270 DEAD/DEAH box helicase CVS41_01085 PF00271 Helicase conserved C-terminal domain CVS41_01095 PF11066 Protein of unknown function (DUF2867) CVS41_01095 PF13460 NAD(P)H-binding CVS41_01100 PF03222 Tryptophan/tyrosine permease family CVS41_01105 PF00390 Malic enzyme, N-terminal domain CVS41_01105 PF03949 Malic enzyme, NAD binding domain CVS41_01110 PF03631 Virulence factor BrkB CVS41_01115 PF02580 D-Tyr-tRNA(Tyr) deacylase CVS41_01120 PF17284 Spermidine synthase tetramerisation domain CVS41_01125 PF00583 Acetyltransferase (GNAT) family CVS41_01125 PF09500 Putative thioesterase (yiiD_Cterm) CVS41_01135 PF00271 Helicase conserved C-terminal domain CVS41_01135 PF17191 RecG wedge domain CVS41_01135 PF00270 DEAD/DEAH box helicase CVS41_01140 PF13091 PLD-like domain CVS41_01145 PF02447 GntP family permease CVS41_01150 PF01202 Shikimate kinase CVS41_01155 PF00920 Dehydratase family CVS41_01160 PF01081 KDPG and KHG aldolase CVS41_01165 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS41_01165 PF00356 Bacterial regulatory proteins, lacI family CVS41_01175 PF01551 Peptidase family M23 CVS41_01180 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CVS41_01180 PF01676 Metalloenzyme superfamily CVS41_01185 PF00581 Rhodanese-like domain CVS41_01190 PF02556 Preprotein translocase subunit SecB CVS41_01195 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CVS41_01195 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CVS41_01200 PF01106 NifU-like domain CVS41_01200 PF01521 Iron-sulphur cluster biosynthesis CVS41_01205 PF00156 Phosphoribosyl transferase domain CVS41_01210 PF00561 alpha/beta hydrolase fold CVS41_01230 PF17674 HHH domain CVS41_01230 PF09371 Tex-like protein N-terminal domain CVS41_01230 PF16921 Tex protein YqgF-like domain CVS41_01230 PF00575 S1 RNA binding domain CVS41_01235 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS41_01235 PF03449 Transcription elongation factor, N-terminal CVS41_01240 PF00486 Transcriptional regulatory protein, C terminal CVS41_01240 PF00072 Response regulator receiver domain CVS41_01245 PF00512 His Kinase A (phospho-acceptor) domain CVS41_01245 PF00672 HAMP domain CVS41_01245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_01255 PF00338 Ribosomal protein S10p/S20e CVS41_01260 PF00297 Ribosomal protein L3 CVS41_01265 PF00573 Ribosomal protein L4/L1 family CVS41_01270 PF00276 Ribosomal protein L23 CVS41_01275 PF03947 Ribosomal Proteins L2, C-terminal domain CVS41_01275 PF00181 Ribosomal Proteins L2, RNA binding domain CVS41_01280 PF00203 Ribosomal protein S19 CVS41_01285 PF00237 Ribosomal protein L22p/L17e CVS41_01290 PF00189 Ribosomal protein S3, C-terminal domain CVS41_01290 PF07650 KH domain CVS41_01295 PF00252 Ribosomal protein L16p/L10e CVS41_01300 PF00831 Ribosomal L29 protein CVS41_01305 PF00366 Ribosomal protein S17 CVS41_01310 PF00238 Ribosomal protein L14p/L23e CVS41_01315 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CVS41_01315 PF00467 KOW motif CVS41_01320 PF00281 Ribosomal protein L5 CVS41_01320 PF00673 ribosomal L5P family C-terminus CVS41_01325 PF00253 Ribosomal protein S14p/S29e CVS41_01330 PF00410 Ribosomal protein S8 CVS41_01335 PF00347 Ribosomal protein L6 CVS41_01340 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CVS41_01345 PF03719 Ribosomal protein S5, C-terminal domain CVS41_01345 PF00333 Ribosomal protein S5, N-terminal domain CVS41_01350 PF00327 Ribosomal protein L30p/L7e CVS41_01355 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CVS41_01360 PF00344 SecY translocase CVS41_01365 PF00444 Ribosomal protein L36 CVS41_01370 PF00416 Ribosomal protein S13/S18 CVS41_01375 PF00411 Ribosomal protein S11 CVS41_01380 PF01479 S4 domain CVS41_01380 PF00163 Ribosomal protein S4/S9 N-terminal domain CVS41_01385 PF01000 RNA polymerase Rpb3/RpoA insert domain CVS41_01385 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CVS41_01385 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CVS41_01390 PF01196 Ribosomal protein L17 CVS41_01400 PF01695 IstB-like ATP binding protein CVS41_01405 PF02796 Helix-turn-helix domain of resolvase CVS41_01405 PF00665 Integrase core domain CVS41_01440 PF00593 TonB dependent receptor CVS41_01440 PF07715 TonB-dependent Receptor Plug Domain CVS41_01445 PF00990 Diguanylate cyclase, GGDEF domain CVS41_01445 PF17151 Periplasmic sensor domain CVS41_01450 PF00512 His Kinase A (phospho-acceptor) domain CVS41_01450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_01450 PF00672 HAMP domain CVS41_01455 PF00486 Transcriptional regulatory protein, C terminal CVS41_01455 PF00072 Response regulator receiver domain CVS41_01470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_01470 PF03466 LysR substrate binding domain CVS41_01480 PF02678 Pirin CVS41_01480 PF17954 Quercetinase C-terminal cupin domain CVS41_01485 PF07681 DoxX CVS41_01490 PF17946 RecC C-terminal domain CVS41_01495 PF12705 PD-(D/E)XK nuclease superfamily CVS41_01495 PF00580 UvrD/REP helicase N-terminal domain CVS41_01495 PF13361 UvrD-like helicase C-terminal domain CVS41_01500 PF13538 UvrD-like helicase C-terminal domain CVS41_01515 PF08448 PAS fold CVS41_01515 PF00990 Diguanylate cyclase, GGDEF domain CVS41_01530 PF00392 Bacterial regulatory proteins, gntR family CVS41_01530 PF07702 UTRA domain CVS41_01545 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_01555 PF00005 ABC transporter CVS41_01555 PF08402 TOBE domain CVS41_01565 PF00990 Diguanylate cyclase, GGDEF domain CVS41_01585 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS41_01595 PF12793 Sugar transport-related sRNA regulator N-term CVS41_01595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_01600 PF00141 Peroxidase CVS41_01615 PF03280 Proteobacterial lipase chaperone protein CVS41_01620 PF00561 alpha/beta hydrolase fold CVS41_01625 PF00579 tRNA synthetases class I (W and Y) CVS41_01625 PF01479 S4 domain CVS41_01630 PF00196 Bacterial regulatory proteins, luxR family CVS41_01650 PF00199 Catalase CVS41_01650 PF06628 Catalase-related immune-responsive CVS41_01655 PF00583 Acetyltransferase (GNAT) family CVS41_01675 PF08264 Anticodon-binding domain of tRNA CVS41_01675 PF10458 Valyl tRNA synthetase tRNA binding arm CVS41_01675 PF00133 tRNA synthetases class I (I, L, M and V) CVS41_01680 PF04364 DNA polymerase III chi subunit, HolC CVS41_01685 PF02789 Cytosol aminopeptidase family, N-terminal domain CVS41_01685 PF00883 Cytosol aminopeptidase family, catalytic domain CVS41_01690 PF03739 Lipopolysaccharide export system permease LptF/LptG CVS41_01695 PF03739 Lipopolysaccharide export system permease LptF/LptG CVS41_01710 PF00589 Phage integrase family CVS41_01755 PF00665 Integrase core domain CVS41_01760 PF01695 IstB-like ATP binding protein CVS41_01800 PF02311 AraC-like ligand binding domain CVS41_01800 PF12833 Helix-turn-helix domain CVS41_01805 PF02653 Branched-chain amino acid transport system / permease component CVS41_01810 PF00005 ABC transporter CVS41_01815 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS41_01820 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CVS41_01825 PF00596 Class II Aldolase and Adducin N-terminal domain CVS41_01830 PF11762 L-arabinose isomerase C-terminal domain CVS41_01830 PF02610 L-arabinose isomerase CVS41_01835 PF00923 Transaldolase/Fructose-6-phosphate aldolase CVS41_01840 PF00456 Transketolase, thiamine diphosphate binding domain CVS41_01840 PF02779 Transketolase, pyrimidine binding domain CVS41_01840 PF02780 Transketolase, C-terminal domain CVS41_01855 PF01263 Aldose 1-epimerase CVS41_01865 PF00593 TonB dependent receptor CVS41_01865 PF07715 TonB-dependent Receptor Plug Domain CVS41_01875 PF00768 D-alanyl-D-alanine carboxypeptidase CVS41_01880 PF13520 Amino acid permease CVS41_01900 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CVS41_01915 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CVS41_01920 PF02602 Uroporphyrinogen-III synthase HemD CVS41_01925 PF03900 Porphobilinogen deaminase, C-terminal domain CVS41_01925 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CVS41_01930 PF01295 Adenylate cyclase, class-I CVS41_01930 PF12633 Adenylate cyclase NT domain CVS41_01935 PF02230 Phospholipase/Carboxylesterase CVS41_01940 PF01491 Frataxin-like domain CVS41_01950 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS41_01950 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CVS41_01955 PF01678 Diaminopimelate epimerase CVS41_01965 PF00589 Phage integrase family CVS41_01965 PF02899 Phage integrase, N-terminal SAM-like domain CVS41_01970 PF13419 Haloacid dehalogenase-like hydrolase CVS41_01980 PF00027 Cyclic nucleotide-binding domain CVS41_01980 PF13545 Crp-like helix-turn-helix domain CVS41_01990 PF07722 Peptidase C26 CVS41_01995 PF04751 Protein of unknown function (DUF615) CVS41_02000 PF01523 Putative modulator of DNA gyrase CVS41_02005 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVS41_02010 PF01722 BolA-like protein CVS41_02020 PF05494 MlaC protein CVS41_02025 PF02470 MlaD protein CVS41_02030 PF02405 Permease MlaE CVS41_02035 PF00005 ABC transporter CVS41_02040 PF00571 CBS domain CVS41_02040 PF01380 SIS domain CVS41_02050 PF06835 Lipopolysaccharide-assembly, LptC-related CVS41_02055 PF03968 OstA-like protein CVS41_02060 PF12399 Branched-chain amino acid ATP-binding cassette transporter CVS41_02060 PF00005 ABC transporter CVS41_02065 PF04963 Sigma-54 factor, core binding domain CVS41_02065 PF04552 Sigma-54, DNA binding domain CVS41_02065 PF00309 Sigma-54 factor, Activator interacting domain (AID) CVS41_02070 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CVS41_02075 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_02080 PF03668 P-loop ATPase protein family CVS41_02085 PF00381 PTS HPr component phosphorylation site CVS41_02090 PF05043 Mga helix-turn-helix domain CVS41_02090 PF00874 PRD domain CVS41_02090 PF08279 HTH domain CVS41_02090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_02095 PF07071 KDGP aldolase CVS41_02100 PF03841 L-seryl-tRNA selenium transferase CVS41_02105 PF01979 Amidohydrolase family CVS41_02135 PF13180 PDZ domain CVS41_02140 PF00595 PDZ domain CVS41_02140 PF13180 PDZ domain CVS41_02150 PF03969 AFG1-like ATPase CVS41_02155 PF00572 Ribosomal protein L13 CVS41_02160 PF00380 Ribosomal protein S9/S16 CVS41_02165 PF00355 Rieske [2Fe-2S] domain CVS41_02165 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CVS41_02170 PF00033 Cytochrome b/b6/petB CVS41_02170 PF00032 Cytochrome b(C-terminal)/b6/petD CVS41_02175 PF02167 Cytochrome C1 family CVS41_02180 PF02798 Glutathione S-transferase, N-terminal domain CVS41_02180 PF00043 Glutathione S-transferase, C-terminal domain CVS41_02185 PF04386 Stringent starvation protein B CVS41_02190 PF04972 BON domain CVS41_02195 PF13580 SIS domain CVS41_02200 PF02021 Uncharacterised protein family UPF0102 CVS41_02205 PF04348 LppC putative lipoprotein CVS41_02210 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS41_02220 PF02381 MraZ protein, putative antitoxin-like CVS41_02225 PF01795 MraW methylase family CVS41_02230 PF04999 Cell division protein FtsL CVS41_02235 PF00905 Penicillin binding protein transpeptidase domain CVS41_02235 PF03717 Penicillin-binding Protein dimerisation domain CVS41_02240 PF08245 Mur ligase middle domain CVS41_02240 PF02875 Mur ligase family, glutamate ligase domain CVS41_02240 PF01225 Mur ligase family, catalytic domain CVS41_02245 PF08245 Mur ligase middle domain CVS41_02245 PF02875 Mur ligase family, glutamate ligase domain CVS41_02245 PF01225 Mur ligase family, catalytic domain CVS41_02250 PF00953 Glycosyl transferase family 4 CVS41_02250 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CVS41_02255 PF02875 Mur ligase family, glutamate ligase domain CVS41_02255 PF08245 Mur ligase middle domain CVS41_02260 PF01098 Cell cycle protein CVS41_02265 PF04101 Glycosyltransferase family 28 C-terminal domain CVS41_02265 PF03033 Glycosyltransferase family 28 N-terminal domain CVS41_02270 PF01225 Mur ligase family, catalytic domain CVS41_02270 PF02875 Mur ligase family, glutamate ligase domain CVS41_02270 PF08245 Mur ligase middle domain CVS41_02275 PF03799 Cell division protein FtsQ CVS41_02275 PF08478 POTRA domain, FtsQ-type CVS41_02280 PF02491 SHS2 domain inserted in FTSA CVS41_02285 PF00091 Tubulin/FtsZ family, GTPase domain CVS41_02285 PF12327 FtsZ family, C-terminal domain CVS41_02290 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CVS41_02300 PF02810 SEC-C motif CVS41_02300 PF07517 SecA DEAD-like domain CVS41_02300 PF01043 SecA preprotein cross-linking domain CVS41_02300 PF07516 SecA Wing and Scaffold domain CVS41_02305 PF00293 NUDIX domain CVS41_02310 PF03884 DNA gyrase inhibitor YacG CVS41_02315 PF07072 Cell division protein CVS41_02320 PF01121 Dephospho-CoA kinase CVS41_02325 PF06750 Bacterial Peptidase A24 N-terminal domain CVS41_02325 PF01478 Type IV leader peptidase family CVS41_02330 PF00482 Type II secretion system (T2SS), protein F CVS41_02335 PF00437 Type II/IV secretion system protein CVS41_02335 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS41_02340 PF07963 Prokaryotic N-terminal methylation motif CVS41_02350 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CVS41_02350 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CVS41_02360 PF01510 N-acetylmuramoyl-L-alanine amidase CVS41_02365 PF00392 Bacterial regulatory proteins, gntR family CVS41_02365 PF07729 FCD domain CVS41_02370 PF17831 Pyruvate dehydrogenase E1 component middle domain CVS41_02370 PF00456 Transketolase, thiamine diphosphate binding domain CVS41_02375 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS41_02375 PF00364 Biotin-requiring enzyme CVS41_02375 PF02817 e3 binding domain CVS41_02380 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_02380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS41_02385 PF00990 Diguanylate cyclase, GGDEF domain CVS41_02385 PF00563 EAL domain CVS41_02385 PF03707 Bacterial signalling protein N terminal repeat CVS41_02390 PF00672 HAMP domain CVS41_02390 PF12729 Four helix bundle sensory module for signal transduction CVS41_02390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_02395 PF01734 Patatin-like phospholipase CVS41_02400 PF00330 Aconitase family (aconitate hydratase) CVS41_02400 PF06434 Aconitate hydratase 2 N-terminus CVS41_02400 PF11791 Aconitate B N-terminal domain CVS41_02405 PF00563 EAL domain CVS41_02405 PF12792 CSS motif domain associated with EAL CVS41_02415 PF07683 Cobalamin synthesis protein cobW C-terminal domain CVS41_02415 PF02492 CobW/HypB/UreG, nucleotide-binding domain CVS41_02420 PF00873 AcrB/AcrD/AcrF family CVS41_02435 PF07690 Major Facilitator Superfamily CVS41_02445 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVS41_02450 PF02152 Dihydroneopterin aldolase CVS41_02455 PF02660 Glycerol-3-phosphate acyltransferase CVS41_02500 PF00206 Lyase CVS41_02500 PF14698 Argininosuccinate lyase C-terminal CVS41_02505 PF00764 Arginosuccinate synthase CVS41_02510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS41_02510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS41_02515 PF00696 Amino acid kinase family CVS41_02520 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS41_02520 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS41_02525 PF07687 Peptidase dimerisation domain CVS41_02525 PF01546 Peptidase family M20/M25/M40 CVS41_02530 PF00311 Phosphoenolpyruvate carboxylase CVS41_02545 PF17151 Periplasmic sensor domain CVS41_02545 PF00990 Diguanylate cyclase, GGDEF domain CVS41_02555 PF06055 Exopolysaccharide synthesis, ExoD CVS41_02565 PF00990 Diguanylate cyclase, GGDEF domain CVS41_02570 PF00909 Ammonium Transporter Family CVS41_02575 PF05433 Glycine zipper 2TM domain CVS41_02580 PF00583 Acetyltransferase (GNAT) family CVS41_02585 PF11756 Nitrous oxide-stimulated promoter CVS41_02590 PF00557 Metallopeptidase family M24 CVS41_02590 PF01321 Creatinase/Prolidase N-terminal domain CVS41_02595 PF00392 Bacterial regulatory proteins, gntR family CVS41_02605 PF01430 Hsp33 protein CVS41_02610 PF01479 S4 domain CVS41_02620 PF01569 PAP2 superfamily CVS41_02625 PF01594 AI-2E family transporter CVS41_02630 PF00313 'Cold-shock' DNA-binding domain CVS41_02640 PF00989 PAS fold CVS41_02640 PF02954 Bacterial regulatory protein, Fis family CVS41_02640 PF00158 Sigma-54 interaction domain CVS41_02645 PF00465 Iron-containing alcohol dehydrogenase CVS41_02650 PF00381 PTS HPr component phosphorylation site CVS41_02650 PF00391 PEP-utilising enzyme, mobile domain CVS41_02650 PF03610 PTS system fructose IIA component CVS41_02650 PF05524 PEP-utilising enzyme, N-terminal CVS41_02655 PF02734 DAK2 domain CVS41_02660 PF02733 Dak1 domain CVS41_02665 PF00860 Permease family CVS41_02670 PF00313 'Cold-shock' DNA-binding domain CVS41_02680 PF01545 Cation efflux family CVS41_02680 PF16916 Dimerisation domain of Zinc Transporter CVS41_02695 PF00436 Single-strand binding protein family CVS41_02700 PF00196 Bacterial regulatory proteins, luxR family CVS41_02705 PF10627 Curli assembly protein CsgE CVS41_02715 PF03783 Curli production assembly/transport component CsgG CVS41_02735 PF17755 UvrA DNA-binding domain CVS41_02735 PF00005 ABC transporter CVS41_02735 PF17760 UvrA interaction domain CVS41_02740 PF17158 Membrane-associated sensor, integral membrane domain CVS41_02740 PF00990 Diguanylate cyclase, GGDEF domain CVS41_02745 PF03922 OmpW family CVS41_02750 PF00672 HAMP domain CVS41_02750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_02765 PF02219 Methylenetetrahydrofolate reductase CVS41_02780 PF07883 Cupin domain CVS41_02780 PF01381 Helix-turn-helix CVS41_02820 PF04363 Protein of unknown function (DUF496) CVS41_02840 PF02464 Competence-damaged protein CVS41_02840 PF00994 Probable molybdopterin binding domain CVS41_02850 PF04204 Homoserine O-succinyltransferase CVS41_02860 PF01037 Lrp/AsnC ligand binding domain CVS41_02865 PF00884 Sulfatase CVS41_02880 PF00128 Alpha amylase, catalytic domain CVS41_02880 PF02903 Alpha amylase, N-terminal ig-like domain CVS41_02880 PF16657 Maltogenic Amylase, C-terminal domain CVS41_02900 PF00106 short chain dehydrogenase CVS41_02905 PF03577 Peptidase family C69 CVS41_02915 PF00465 Iron-containing alcohol dehydrogenase CVS41_02920 PF02142 MGS-like domain CVS41_02925 PF00210 Ferritin-like domain CVS41_02940 PF17176 tRNA-binding domain CVS41_02940 PF13718 GNAT acetyltransferase 2 CVS41_02940 PF08351 Domain of unknown function (DUF1726) CVS41_02940 PF05127 Helicase CVS41_02945 PF00106 short chain dehydrogenase CVS41_02950 PF00072 Response regulator receiver domain CVS41_02950 PF01584 CheW-like domain CVS41_02960 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CVS41_02960 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CVS41_02965 PF02698 DUF218 domain CVS41_02970 PF08453 Peptidase family M9 N-terminal CVS41_02970 PF01752 Collagenase CVS41_02975 PF00501 AMP-binding enzyme CVS41_02980 PF13378 Enolase C-terminal domain-like CVS41_02985 PF00378 Enoyl-CoA hydratase/isomerase CVS41_02990 PF12697 Alpha/beta hydrolase family CVS41_02995 PF16582 Middle domain of thiamine pyrophosphate CVS41_02995 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS41_02995 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS41_03000 PF00425 chorismate binding enzyme CVS41_03005 PF01040 UbiA prenyltransferase family CVS41_03025 PF00271 Helicase conserved C-terminal domain CVS41_03025 PF00270 DEAD/DEAH box helicase CVS41_03025 PF03880 DbpA RNA binding domain CVS41_03030 PF07670 Nucleoside recognition CVS41_03030 PF01773 Na+ dependent nucleoside transporter N-terminus CVS41_03030 PF07662 Na+ dependent nucleoside transporter C-terminus CVS41_03035 PF04307 LexA-binding, inner membrane-associated putative hydrolase CVS41_03040 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CVS41_03045 PF01544 CorA-like Mg2+ transporter protein CVS41_03060 PF00684 DnaJ central domain CVS41_03060 PF00226 DnaJ domain CVS41_03060 PF01556 DnaJ C terminal domain CVS41_03070 PF05068 Mannitol repressor CVS41_03075 PF08125 Mannitol dehydrogenase C-terminal domain CVS41_03075 PF01232 Mannitol dehydrogenase Rossmann domain CVS41_03080 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_03080 PF02378 Phosphotransferase system, EIIC CVS41_03080 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_03085 PF03279 Bacterial lipid A biosynthesis acyltransferase CVS41_03090 PF01467 Cytidylyltransferase-like CVS41_03090 PF00294 pfkB family carbohydrate kinase CVS41_03095 PF02321 Outer membrane efflux protein CVS41_03100 PF00293 NUDIX domain CVS41_03105 PF06853 Protein of unknown function (DUF1249) CVS41_03110 PF00149 Calcineurin-like phosphoesterase CVS41_03115 PF05728 Uncharacterised protein family (UPF0227) CVS41_03120 PF00204 DNA gyrase B CVS41_03120 PF00986 DNA gyrase B subunit, carboxyl terminus CVS41_03120 PF01751 Toprim domain CVS41_03120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_03125 PF03989 DNA gyrase C-terminal domain, beta-propeller CVS41_03125 PF00521 DNA gyrase/topoisomerase IV, subunit A CVS41_03135 PF00854 POT family CVS41_03155 PF01556 DnaJ C terminal domain CVS41_03155 PF00684 DnaJ central domain CVS41_03155 PF00226 DnaJ domain CVS41_03165 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CVS41_03165 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CVS41_03170 PF03466 LysR substrate binding domain CVS41_03170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_03175 PF00578 AhpC/TSA family CVS41_03195 PF01553 Acyltransferase CVS41_03200 PF04012 PspA/IM30 family CVS41_03215 PF01541 GIY-YIG catalytic domain CVS41_03225 PF00892 EamA-like transporter family CVS41_03230 PF03167 Uracil DNA glycosylase superfamily CVS41_03235 PF00892 EamA-like transporter family CVS41_03240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_03240 PF03466 LysR substrate binding domain CVS41_03245 PF00950 ABC 3 transport family CVS41_03250 PF00005 ABC transporter CVS41_03255 PF01297 Zinc-uptake complex component A periplasmic CVS41_03275 PF01551 Peptidase family M23 CVS41_03275 PF08525 Opacity-associated protein A N-terminal motif CVS41_03275 PF01476 LysM domain CVS41_03280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_03285 PF04222 Protein of unknown function (DUF416) CVS41_03300 PF02028 BCCT, betaine/carnitine/choline family transporter CVS41_03305 PF01743 Poly A polymerase head domain CVS41_03305 PF12627 Probable RNA and SrmB- binding site of polymerase A CVS41_03305 PF01966 HD domain CVS41_03310 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS41_03310 PF00633 Helix-hairpin-helix motif CVS41_03310 PF10576 Iron-sulfur binding domain of endonuclease III CVS41_03310 PF14815 NUDIX domain CVS41_03315 PF04362 Bacterial Fe(2+) trafficking CVS41_03320 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CVS41_03320 PF01464 Transglycosylase SLT domain CVS41_03325 PF04076 Bacterial OB fold (BOF) protein CVS41_03330 PF00657 GDSL-like Lipase/Acylhydrolase CVS41_03335 PF00691 OmpA family CVS41_03335 PF01389 OmpA-like transmembrane domain CVS41_03340 PF00990 Diguanylate cyclase, GGDEF domain CVS41_03345 PF00575 S1 RNA binding domain CVS41_03345 PF00773 RNB domain CVS41_03345 PF08206 Ribonuclease B OB domain CVS41_03345 PF08461 Ribonuclease R winged-helix domain CVS41_03345 PF17876 Cold shock domain CVS41_03350 PF00588 SpoU rRNA Methylase family CVS41_03350 PF08032 RNA 2'-O ribose methyltransferase substrate binding CVS41_03360 PF13673 Acetyltransferase (GNAT) domain CVS41_03365 PF00271 Helicase conserved C-terminal domain CVS41_03365 PF00270 DEAD/DEAH box helicase CVS41_03370 PF05175 Methyltransferase small domain CVS41_03375 PF05525 Branched-chain amino acid transport protein CVS41_03380 PF05525 Branched-chain amino acid transport protein CVS41_03395 PF01475 Ferric uptake regulator family CVS41_03400 PF01207 Dihydrouridine synthase (Dus) CVS41_03405 PF08447 PAS fold CVS41_03405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_03415 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_03430 PF10952 Protein of unknown function (DUF2753) CVS41_03435 PF00378 Enoyl-CoA hydratase/isomerase CVS41_03450 PF00106 short chain dehydrogenase CVS41_03455 PF04073 Aminoacyl-tRNA editing domain CVS41_03455 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS41_03455 PF03129 Anticodon binding domain CVS41_03460 PF05958 tRNA (Uracil-5-)-methyltransferase CVS41_03460 PF01938 TRAM domain CVS41_03470 PF02470 MlaD protein CVS41_03475 PF04403 Paraquat-inducible protein A CVS41_03480 PF17209 Hfq protein CVS41_03485 PF13419 Haloacid dehalogenase-like hydrolase CVS41_03495 PF01590 GAF domain CVS41_03495 PF00990 Diguanylate cyclase, GGDEF domain CVS41_03495 PF00360 Phytochrome region CVS41_03495 PF00563 EAL domain CVS41_03500 PF08206 Ribonuclease B OB domain CVS41_03500 PF17876 Cold shock domain CVS41_03500 PF00773 RNB domain CVS41_03505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_03505 PF03466 LysR substrate binding domain CVS41_03510 PF00765 Autoinducer synthase CVS41_03515 PF03472 Autoinducer binding domain CVS41_03515 PF00196 Bacterial regulatory proteins, luxR family CVS41_03520 PF01810 LysE type translocator CVS41_03525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_03525 PF00672 HAMP domain CVS41_03530 PF07499 RuvA, C-terminal domain CVS41_03530 PF01330 RuvA N terminal domain CVS41_03535 PF05496 Holliday junction DNA helicase RuvB P-loop domain CVS41_03535 PF05491 RuvB C-terminal winged helix domain CVS41_03535 PF17864 RuvB AAA lid domain CVS41_03540 PF01654 Cytochrome bd terminal oxidase subunit I CVS41_03545 PF02322 Cytochrome bd terminal oxidase subunit II CVS41_03550 PF08173 Membrane bound YbgT-like protein CVS41_03555 PF09600 Cyd operon protein YbgE (Cyd_oper_YbgE) CVS41_03560 PF03061 Thioesterase superfamily CVS41_03565 PF01618 MotA/TolQ/ExbB proton channel family CVS41_03570 PF02472 Biopolymer transport protein ExbD/TolR CVS41_03580 PF07676 WD40-like Beta Propeller Repeat CVS41_03580 PF04052 TolB amino-terminal domain CVS41_03585 PF00691 OmpA family CVS41_03590 PF13174 Tetratricopeptide repeat CVS41_03590 PF16331 TolA binding protein trimerisation CVS41_03635 PF00209 Sodium:neurotransmitter symporter family CVS41_03645 PF00209 Sodium:neurotransmitter symporter family CVS41_03665 PF07690 Major Facilitator Superfamily CVS41_03675 PF01037 Lrp/AsnC ligand binding domain CVS41_03690 PF00293 NUDIX domain CVS41_03700 PF01641 SelR domain CVS41_03705 PF00128 Alpha amylase, catalytic domain CVS41_03705 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS41_03710 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS41_03710 PF02806 Alpha amylase, C-terminal all-beta domain CVS41_03710 PF00128 Alpha amylase, catalytic domain CVS41_03715 PF02446 4-alpha-glucanotransferase CVS41_03725 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS41_03725 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS41_03730 PF01263 Aldose 1-epimerase CVS41_03735 PF02445 Quinolinate synthetase A protein CVS41_03740 PF00672 HAMP domain CVS41_03740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_03745 PF01957 NfeD-like C-terminal, partner-binding CVS41_03750 PF16200 C-terminal region of band_7 CVS41_03750 PF01145 SPFH domain / Band 7 family CVS41_03755 PF10414 Sirohaem synthase dimerisation region CVS41_03755 PF14824 Sirohaem biosynthesis protein central CVS41_03755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS41_03760 PF01507 Phosphoadenosine phosphosulfate reductase family CVS41_03765 PF00009 Elongation factor Tu GTP binding domain CVS41_03770 PF02080 TrkA-C domain CVS41_03770 PF03600 Citrate transporter CVS41_03785 PF08447 PAS fold CVS41_03785 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_03805 PF00005 ABC transporter CVS41_03820 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CVS41_03835 PF00719 Inorganic pyrophosphatase CVS41_03840 PF11849 Domain of unknown function (DUF3369) CVS41_03850 PF00893 Small Multidrug Resistance protein CVS41_03855 PF00893 Small Multidrug Resistance protein CVS41_03860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS41_03865 PF00912 Transglycosylase CVS41_03865 PF14814 Bifunctional transglycosylase second domain CVS41_03865 PF00905 Penicillin binding protein transpeptidase domain CVS41_03870 PF08482 ATP-dependent helicase C-terminal CVS41_03870 PF00271 Helicase conserved C-terminal domain CVS41_03870 PF00270 DEAD/DEAH box helicase CVS41_03870 PF04408 Helicase associated domain (HA2) CVS41_03880 PF17746 SfsA N-terminal OB domain CVS41_03880 PF03749 Sugar fermentation stimulation protein RE domain CVS41_03885 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVS41_03890 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS41_03895 PF12626 Polymerase A arginine-rich C-terminus CVS41_03895 PF01743 Poly A polymerase head domain CVS41_03895 PF12627 Probable RNA and SrmB- binding site of polymerase A CVS41_03900 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVS41_03905 PF02548 Ketopantoate hydroxymethyltransferase CVS41_03910 PF02569 Pantoate-beta-alanine ligase CVS41_03940 PF01869 BadF/BadG/BcrA/BcrD ATPase family CVS41_03945 PF06050 2-hydroxyglutaryl-CoA dehydratase, D-component CVS41_03950 PF01061 ABC-2 type transporter CVS41_03955 PF00005 ABC transporter CVS41_03960 PF00156 Phosphoribosyl transferase domain CVS41_03965 PF00440 Bacterial regulatory proteins, tetR family CVS41_03970 PF02441 Flavoprotein CVS41_03975 PF01225 Mur ligase family, catalytic domain CVS41_03975 PF08245 Mur ligase middle domain CVS41_03975 PF02875 Mur ligase family, glutamate ligase domain CVS41_03980 PF01569 PAP2 superfamily CVS41_03985 PF01370 NAD dependent epimerase/dehydratase family CVS41_03990 PF00175 Oxidoreductase NAD-binding domain CVS41_03990 PF00970 Oxidoreductase FAD-binding domain CVS41_03990 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_03995 PF03063 Prismane/CO dehydrogenase family CVS41_04000 PF00210 Ferritin-like domain CVS41_04005 PF01510 N-acetylmuramoyl-L-alanine amidase CVS41_04010 PF07308 Protein of unknown function (DUF1456) CVS41_04015 PF01627 Hpt domain CVS41_04015 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CVS41_04015 PF00072 Response regulator receiver domain CVS41_04015 PF00512 His Kinase A (phospho-acceptor) domain CVS41_04015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_04015 PF00672 HAMP domain CVS41_04020 PF01938 TRAM domain CVS41_04020 PF05958 tRNA (Uracil-5-)-methyltransferase CVS41_04025 PF02824 TGS domain CVS41_04025 PF04607 Region found in RelA / SpoT proteins CVS41_04025 PF13291 ACT domain CVS41_04030 PF03819 MazG nucleotide pyrophosphohydrolase domain CVS41_04035 PF06418 CTP synthase N-terminus CVS41_04035 PF00117 Glutamine amidotransferase class-I CVS41_04040 PF03952 Enolase, N-terminal domain CVS41_04040 PF00113 Enolase, C-terminal TIM barrel domain CVS41_04050 PF01695 IstB-like ATP binding protein CVS41_04055 PF02796 Helix-turn-helix domain of resolvase CVS41_04055 PF00665 Integrase core domain CVS41_04095 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CVS41_04105 PF00005 ABC transporter CVS41_04105 PF12848 ABC transporter CVS41_04125 PF00155 Aminotransferase class I and II CVS41_04125 PF00392 Bacterial regulatory proteins, gntR family CVS41_04135 PF01810 LysE type translocator CVS41_04140 PF01177 Asp/Glu/Hydantoin racemase CVS41_04150 PF04074 YhcH/YjgK/YiaL CVS41_04155 PF00871 Acetokinase family CVS41_04160 PF00924 Mechanosensitive ion channel CVS41_04165 PF03734 L,D-transpeptidase catalytic domain CVS41_04165 PF17969 L,D-transpeptidase C-terminal domain CVS41_04175 PF00474 Sodium:solute symporter family CVS41_04180 PF04977 Septum formation initiator CVS41_04185 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CVS41_04190 PF02542 YgbB family CVS41_04195 PF01142 tRNA pseudouridine synthase D (TruD) CVS41_04200 PF01975 Survival protein SurE CVS41_04210 PF09335 SNARE associated Golgi protein CVS41_04215 PF01476 LysM domain CVS41_04215 PF01551 Peptidase family M23 CVS41_04220 PF04542 Sigma-70 region 2 CVS41_04220 PF00140 Sigma-70 factor, region 1.2 CVS41_04220 PF04539 Sigma-70 region 3 CVS41_04220 PF04545 Sigma-70, region 4 CVS41_04225 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS41_04235 PF03466 LysR substrate binding domain CVS41_04235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_04240 PF04371 Porphyromonas-type peptidyl-arginine deiminase CVS41_04245 PF01425 Amidase CVS41_04255 PF00753 Metallo-beta-lactamase superfamily CVS41_04265 PF00270 DEAD/DEAH box helicase CVS41_04265 PF00271 Helicase conserved C-terminal domain CVS41_04270 PF00990 Diguanylate cyclase, GGDEF domain CVS41_04280 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CVS41_04285 PF03150 Di-haem cytochrome c peroxidase CVS41_04295 PF00445 Ribonuclease T2 family CVS41_04305 PF03060 Nitronate monooxygenase CVS41_04330 PF09297 NADH pyrophosphatase zinc ribbon domain CVS41_04330 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain CVS41_04330 PF00293 NUDIX domain CVS41_04340 PF00512 His Kinase A (phospho-acceptor) domain CVS41_04340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_04345 PF00486 Transcriptional regulatory protein, C terminal CVS41_04345 PF00072 Response regulator receiver domain CVS41_04365 PF03710 Glutamate-ammonia ligase adenylyltransferase CVS41_04365 PF08335 GlnD PII-uridylyltransferase CVS41_04370 PF00672 HAMP domain CVS41_04370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_04375 PF00520 Ion transport protein CVS41_04375 PF00027 Cyclic nucleotide-binding domain CVS41_04380 PF08239 Bacterial SH3 domain CVS41_04385 PF01619 Proline dehydrogenase CVS41_04385 PF18327 Proline utilization A proline dehydrogenase N-terminal domain CVS41_04385 PF00171 Aldehyde dehydrogenase family CVS41_04385 PF14850 DNA-binding domain of Proline dehydrogenase CVS41_04390 PF09297 NADH pyrophosphatase zinc ribbon domain CVS41_04390 PF00293 NUDIX domain CVS41_04395 PF01208 Uroporphyrinogen decarboxylase (URO-D) CVS41_04400 PF00480 ROK family CVS41_04405 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS41_04405 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS41_04410 PF00162 Phosphoglycerate kinase CVS41_04415 PF01116 Fructose-bisphosphate aldolase class-II CVS41_04420 PF01266 FAD dependent oxidoreductase CVS41_04440 PF11412 Disulphide bond corrector protein DsbC CVS41_04440 PF02683 Cytochrome C biogenesis protein transmembrane region CVS41_04445 PF03091 CutA1 divalent ion tolerance protein CVS41_04460 PF03466 LysR substrate binding domain CVS41_04460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_04465 PF01571 Aminomethyltransferase folate-binding domain CVS41_04470 PF03937 Flavinator of succinate dehydrogenase CVS41_04480 PF00890 FAD binding domain CVS41_04480 PF02910 Fumarate reductase flavoprotein C-term CVS41_04485 PF08281 Sigma-70, region 4 CVS41_04485 PF04542 Sigma-70 region 2 CVS41_04490 PF03872 Anti sigma-E protein RseA, N-terminal domain CVS41_04490 PF03873 Anti sigma-E protein RseA, C-terminal domain CVS41_04495 PF03888 MucB/RseB N-terminal domain CVS41_04495 PF17188 MucB/RseB C-terminal domain CVS41_04505 PF03144 Elongation factor Tu domain 2 CVS41_04505 PF00009 Elongation factor Tu GTP binding domain CVS41_04505 PF00679 Elongation factor G C-terminus CVS41_04505 PF06421 GTP-binding protein LepA C-terminus CVS41_04510 PF10502 Signal peptidase, peptidase S26 CVS41_04515 PF00035 Double-stranded RNA binding motif CVS41_04515 PF14622 Ribonuclease-III-like CVS41_04520 PF01926 50S ribosome-binding GTPase CVS41_04520 PF07650 KH domain CVS41_04525 PF11967 Recombination protein O N terminal CVS41_04525 PF02565 Recombination protein O C terminal CVS41_04530 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CVS41_04535 PF00459 Inositol monophosphatase family CVS41_04540 PF03795 YCII-related domain CVS41_04545 PF04279 Intracellular septation protein A CVS41_04550 PF00282 Pyridoxal-dependent decarboxylase conserved domain CVS41_04555 PF03006 Haemolysin-III related CVS41_04560 PF06826 Predicted Permease Membrane Region CVS41_04560 PF02080 TrkA-C domain CVS41_04575 PF03707 Bacterial signalling protein N terminal repeat CVS41_04575 PF00990 Diguanylate cyclase, GGDEF domain CVS41_04575 PF00563 EAL domain CVS41_04580 PF06877 Regulator of ribonuclease activity B CVS41_04600 PF00561 alpha/beta hydrolase fold CVS41_04605 PF00194 Eukaryotic-type carbonic anhydrase CVS41_04610 PF04227 Indigoidine synthase A like protein CVS41_04615 PF00294 pfkB family carbohydrate kinase CVS41_04630 PF00582 Universal stress protein family CVS41_04640 PF00267 Gram-negative porin CVS41_04645 PF08241 Methyltransferase domain CVS41_04650 PF13545 Crp-like helix-turn-helix domain CVS41_04650 PF00027 Cyclic nucleotide-binding domain CVS41_04655 PF02566 OsmC-like protein CVS41_04670 PF00485 Phosphoribulokinase / Uridine kinase family CVS41_04675 PF06794 Uncharacterised protein family (UPF0270) CVS41_04680 PF00360 Phytochrome region CVS41_04680 PF00990 Diguanylate cyclase, GGDEF domain CVS41_04680 PF00563 EAL domain CVS41_04680 PF01590 GAF domain CVS41_04685 PF00561 alpha/beta hydrolase fold CVS41_04690 PF00072 Response regulator receiver domain CVS41_04690 PF01584 CheW-like domain CVS41_04700 PF09526 Probable metal-binding protein (DUF2387) CVS41_04705 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_04720 PF00772 DnaB-like helicase N terminal domain CVS41_04720 PF03796 DnaB-like helicase C terminal domain CVS41_04725 PF00842 Alanine racemase, C-terminal domain CVS41_04725 PF01168 Alanine racemase, N-terminal domain CVS41_04730 PF01894 Uncharacterised protein family UPF0047 CVS41_04735 PF03575 Peptidase family S51 CVS41_04745 PF00005 ABC transporter CVS41_04750 PF01032 FecCD transport family CVS41_04760 PF06228 Haem utilisation ChuX/HutX CVS41_04765 PF01243 Pyridoxamine 5'-phosphate oxidase CVS41_04785 PF07715 TonB-dependent Receptor Plug Domain CVS41_04785 PF00593 TonB dependent receptor CVS41_04790 PF12832 MFS_1 like family CVS41_04800 PF13443 Cro/C1-type HTH DNA-binding domain CVS41_04810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_04810 PF00672 HAMP domain CVS41_04810 PF00512 His Kinase A (phospho-acceptor) domain CVS41_04810 PF01627 Hpt domain CVS41_04810 PF00072 Response regulator receiver domain CVS41_04810 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CVS41_04815 PF00704 Glycosyl hydrolases family 18 CVS41_04815 PF08329 Chitinase A, N-terminal domain CVS41_04820 PF00990 Diguanylate cyclase, GGDEF domain CVS41_04820 PF05230 MASE2 domain CVS41_04825 PF00704 Glycosyl hydrolases family 18 CVS41_04825 PF08329 Chitinase A, N-terminal domain CVS41_04830 PF12561 ToxR activated gene A lipoprotein domain CVS41_04830 PF17945 Beta/Gamma crystallin CVS41_04875 PF00704 Glycosyl hydrolases family 18 CVS41_04875 PF06483 Chitinase C CVS41_04880 PF01584 CheW-like domain CVS41_04880 PF00072 Response regulator receiver domain CVS41_04885 PF13472 GDSL-like Lipase/Acylhydrolase family CVS41_04890 PF00005 ABC transporter CVS41_04900 PF08338 Domain of unknown function (DUF1731) CVS41_04900 PF01370 NAD dependent epimerase/dehydratase family CVS41_04905 PF00563 EAL domain CVS41_04905 PF12792 CSS motif domain associated with EAL CVS41_04910 PF00155 Aminotransferase class I and II CVS41_04915 PF02390 Putative methyltransferase CVS41_04920 PF04320 Protein with unknown function (DUF469) CVS41_04925 PF04960 Glutaminase CVS41_04930 PF00581 Rhodanese-like domain CVS41_04935 PF06004 Bacterial protein of unknown function (DUF903) CVS41_04945 PF00994 Probable molybdopterin binding domain CVS41_04955 PF06738 Putative threonine/serine exporter CVS41_04960 PF12821 Threonine/Serine exporter, ThrE CVS41_04965 PF00186 Dihydrofolate reductase CVS41_04970 PF01507 Phosphoadenosine phosphosulfate reductase family CVS41_04975 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS41_04975 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS41_04980 PF00667 FAD binding domain CVS41_04980 PF00258 Flavodoxin CVS41_04980 PF00175 Oxidoreductase NAD-binding domain CVS41_04985 PF02567 Phenazine biosynthesis-like protein CVS41_04990 PF01336 OB-fold nucleic acid binding domain CVS41_04990 PF00152 tRNA synthetases class II (D, K and N) CVS41_05000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_05000 PF00672 HAMP domain CVS41_05000 PF02743 Cache domain CVS41_05005 PF03616 Sodium/glutamate symporter CVS41_05010 PF17763 Glutaminase/Asparaginase C-terminal domain CVS41_05010 PF00710 Asparaginase, N-terminal CVS41_05015 PF07023 Protein of unknown function (DUF1315) CVS41_05020 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS41_05020 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS41_05035 PF04055 Radical SAM superfamily CVS41_05035 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CVS41_05040 PF03099 Biotin/lipoate A/B protein ligase family CVS41_05045 PF04359 Protein of unknown function (DUF493) CVS41_05050 PF07943 Penicillin-binding protein 5, C-terminal domain CVS41_05050 PF00768 D-alanyl-D-alanine carboxypeptidase CVS41_05055 PF05036 Sporulation related domain CVS41_05055 PF03330 Lytic transglycolase CVS41_05060 PF13406 Transglycosylase SLT domain CVS41_05065 PF01098 Cell cycle protein CVS41_05070 PF03717 Penicillin-binding Protein dimerisation domain CVS41_05070 PF00905 Penicillin binding protein transpeptidase domain CVS41_05075 PF02590 Predicted SPOUT methyltransferase CVS41_05085 PF01467 Cytidylyltransferase-like CVS41_05100 PF13603 Leucyl-tRNA synthetase, Domain 2 CVS41_05100 PF08264 Anticodon-binding domain of tRNA CVS41_05100 PF00133 tRNA synthetases class I (I, L, M and V) CVS41_05105 PF07295 Zinc-ribbon containing domain CVS41_05110 PF01523 Putative modulator of DNA gyrase CVS41_05115 PF01523 Putative modulator of DNA gyrase CVS41_05120 PF00258 Flavodoxin CVS41_05125 PF00589 Phage integrase family CVS41_05125 PF02899 Phage integrase, N-terminal SAM-like domain CVS41_05130 PF01741 Large-conductance mechanosensitive channel, MscL CVS41_05140 PF02272 DHHA1 domain CVS41_05140 PF01368 DHH family CVS41_05140 PF17768 RecJ OB domain CVS41_05145 PF13411 MerR HTH family regulatory protein CVS41_05150 PF00795 Carbon-nitrogen hydrolase CVS41_05155 PF00571 CBS domain CVS41_05155 PF03471 Transporter associated domain CVS41_05160 PF02130 Uncharacterized protein family UPF0054 CVS41_05165 PF02562 PhoH-like protein CVS41_05170 PF01938 TRAM domain CVS41_05170 PF00919 Uncharacterized protein family UPF0004 CVS41_05170 PF04055 Radical SAM superfamily CVS41_05175 PF01494 FAD binding domain CVS41_05180 PF00857 Isochorismatase family CVS41_05185 PF05230 MASE2 domain CVS41_05185 PF00990 Diguanylate cyclase, GGDEF domain CVS41_05190 PF03466 LysR substrate binding domain CVS41_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_05200 PF13419 Haloacid dehalogenase-like hydrolase CVS41_05210 PF08448 PAS fold CVS41_05210 PF08447 PAS fold CVS41_05210 PF05231 MASE1 CVS41_05210 PF13426 PAS domain CVS41_05210 PF00563 EAL domain CVS41_05210 PF00990 Diguanylate cyclase, GGDEF domain CVS41_05220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_05220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS41_05230 PF09285 Elongation factor P, C-terminal CVS41_05230 PF08207 Elongation factor P (EF-P) KOW-like domain CVS41_05230 PF01132 Elongation factor P (EF-P) OB domain CVS41_05240 PF00478 IMP dehydrogenase / GMP reductase domain CVS41_05250 PF08521 Two-component sensor kinase N-terminal CVS41_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_05250 PF00512 His Kinase A (phospho-acceptor) domain CVS41_05255 PF00486 Transcriptional regulatory protein, C terminal CVS41_05255 PF00072 Response regulator receiver domain CVS41_05265 PF00106 short chain dehydrogenase CVS41_05275 PF00501 AMP-binding enzyme CVS41_05290 PF06224 Winged helix DNA-binding domain CVS41_05300 PF01546 Peptidase family M20/M25/M40 CVS41_05300 PF07687 Peptidase dimerisation domain CVS41_05305 PF07670 Nucleoside recognition CVS41_05310 PF07670 Nucleoside recognition CVS41_05315 PF02313 Fumarate reductase subunit D CVS41_05320 PF02300 Fumarate reductase subunit C CVS41_05325 PF13085 2Fe-2S iron-sulfur cluster binding domain CVS41_05325 PF13183 4Fe-4S dicluster domain CVS41_05330 PF02910 Fumarate reductase flavoprotein C-term CVS41_05330 PF00890 FAD binding domain CVS41_05335 PF00672 HAMP domain CVS41_05335 PF02743 Cache domain CVS41_05335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_05340 PF03009 Glycerophosphoryl diester phosphodiesterase family CVS41_05345 PF12794 Mechanosensitive ion channel inner membrane domain 1 CVS41_05345 PF12795 Mechanosensitive ion channel porin domain CVS41_05345 PF00924 Mechanosensitive ion channel CVS41_05355 PF08525 Opacity-associated protein A N-terminal motif CVS41_05355 PF01476 LysM domain CVS41_05355 PF01551 Peptidase family M23 CVS41_05365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_05365 PF03466 LysR substrate binding domain CVS41_05380 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_05380 PF00672 HAMP domain CVS41_05380 PF02743 Cache domain CVS41_05385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_05385 PF03466 LysR substrate binding domain CVS41_05390 PF17092 Penicillin-binding protein OB-like domain CVS41_05390 PF00905 Penicillin binding protein transpeptidase domain CVS41_05390 PF00912 Transglycosylase CVS41_05415 PF11741 AMIN domain CVS41_05415 PF07660 Secretin and TonB N terminus short domain CVS41_05415 PF00263 Bacterial type II and III secretion system protein CVS41_05415 PF03958 Bacterial type II/III secretion system short domain CVS41_05420 PF01202 Shikimate kinase CVS41_05425 PF01761 3-dehydroquinate synthase CVS41_05435 PF02086 D12 class N6 adenine-specific DNA methyltransferase CVS41_05440 PF00834 Ribulose-phosphate 3 epimerase family CVS41_05445 PF13419 Haloacid dehalogenase-like hydrolase CVS41_05450 PF00579 tRNA synthetases class I (W and Y) CVS41_05460 PF00117 Glutamine amidotransferase class-I CVS41_05465 PF00202 Aminotransferase class-III CVS41_05470 PF04958 Arginine N-succinyltransferase beta subunit CVS41_05475 PF00171 Aldehyde dehydrogenase family CVS41_05490 PF13419 Haloacid dehalogenase-like hydrolase CVS41_05495 PF07690 Major Facilitator Superfamily CVS41_05500 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CVS41_05500 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CVS41_05500 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS41_05500 PF10371 Domain of unknown function CVS41_05500 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CVS41_05505 PF16657 Maltogenic Amylase, C-terminal domain CVS41_05505 PF00128 Alpha amylase, catalytic domain CVS41_05515 PF07859 alpha/beta hydrolase fold CVS41_05530 PF01048 Phosphorylase superfamily CVS41_05535 PF04973 Nicotinamide mononucleotide transporter CVS41_05540 PF03600 Citrate transporter CVS41_05540 PF02080 TrkA-C domain CVS41_05580 PF06071 Protein of unknown function (DUF933) CVS41_05580 PF01926 50S ribosome-binding GTPase CVS41_05585 PF01195 Peptidyl-tRNA hydrolase CVS41_05590 PF00149 Calcineurin-like phosphoesterase CVS41_05590 PF02872 5'-nucleotidase, C-terminal domain CVS41_05595 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CVS41_05595 PF14572 Phosphoribosyl synthetase-associated domain CVS41_05605 PF08544 GHMP kinases C terminal CVS41_05605 PF00288 GHMP kinases N terminal domain CVS41_05610 PF03550 Outer membrane lipoprotein LolB CVS41_05615 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CVS41_05615 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CVS41_05615 PF01488 Shikimate / quinate 5-dehydrogenase CVS41_05620 PF03462 PCRF domain CVS41_05620 PF00472 RF-1 domain CVS41_05625 PF13847 Methyltransferase domain CVS41_05625 PF17827 PrmC N-terminal domain CVS41_05635 PF13369 Transglutaminase-like superfamily CVS41_05640 PF00793 DAHP synthetase I family CVS41_05645 PF01228 Glycine radical CVS41_05655 PF03167 Uracil DNA glycosylase superfamily CVS41_05665 PF01204 Trehalase CVS41_05675 PF01161 Phosphatidylethanolamine-binding protein CVS41_05695 PF00155 Aminotransferase class I and II CVS41_05700 PF07690 Major Facilitator Superfamily CVS41_05705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_05705 PF03466 LysR substrate binding domain CVS41_05710 PF00106 short chain dehydrogenase CVS41_05715 PF08496 Peptidase family S49 N-terminal CVS41_05715 PF01343 Peptidase family S49 CVS41_05720 PF07690 Major Facilitator Superfamily CVS41_05725 PF00990 Diguanylate cyclase, GGDEF domain CVS41_05730 PF02635 DsrE/DsrF-like family CVS41_05740 PF12838 4Fe-4S dicluster domain CVS41_05750 PF01590 GAF domain CVS41_05750 PF00989 PAS fold CVS41_05750 PF00990 Diguanylate cyclase, GGDEF domain CVS41_05750 PF00563 EAL domain CVS41_05775 PF00196 Bacterial regulatory proteins, luxR family CVS41_05775 PF00072 Response regulator receiver domain CVS41_05780 PF00512 His Kinase A (phospho-acceptor) domain CVS41_05780 PF01627 Hpt domain CVS41_05780 PF00072 Response regulator receiver domain CVS41_05780 PF00672 HAMP domain CVS41_05780 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CVS41_05780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_05805 PF04996 Succinylarginine dihydrolase CVS41_05810 PF01131 DNA topoisomerase CVS41_05810 PF01396 Topoisomerase DNA binding C4 zinc finger CVS41_05810 PF08272 Topoisomerase I zinc-ribbon-like CVS41_05810 PF01751 Toprim domain CVS41_05820 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_05820 PF08447 PAS fold CVS41_05825 PF00728 Glycosyl hydrolase family 20, catalytic domain CVS41_05825 PF02838 Glycosyl hydrolase family 20, domain 2 CVS41_05830 PF01869 BadF/BadG/BcrA/BcrD ATPase family CVS41_05840 PF00005 ABC transporter CVS41_05840 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_05845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_05845 PF00005 ABC transporter CVS41_05850 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_05850 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_05855 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_05860 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_05865 PF00512 His Kinase A (phospho-acceptor) domain CVS41_05865 PF09308 LuxQ, periplasmic CVS41_05865 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_05865 PF00072 Response regulator receiver domain CVS41_05885 PF10725 Protein of unknown function (DUF2517) CVS41_05895 PF05114 Protein of unknown function (DUF692) CVS41_05915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_05915 PF13426 PAS domain CVS41_05915 PF08447 PAS fold CVS41_05935 PF04632 Fusaric acid resistance protein family CVS41_05940 PF03454 MoeA C-terminal region (domain IV) CVS41_05940 PF00994 Probable molybdopterin binding domain CVS41_05940 PF03453 MoeA N-terminal region (domain I and II) CVS41_05945 PF12804 MobA-like NTP transferase domain CVS41_05950 PF00005 ABC transporter CVS41_05955 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_05960 PF12849 PBP superfamily domain CVS41_05965 PF02954 Bacterial regulatory protein, Fis family CVS41_05965 PF00158 Sigma-54 interaction domain CVS41_05965 PF00072 Response regulator receiver domain CVS41_05970 PF00989 PAS fold CVS41_05970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_05970 PF00512 His Kinase A (phospho-acceptor) domain CVS41_05980 PF02634 FdhD/NarQ family CVS41_06015 PF12838 4Fe-4S dicluster domain CVS41_06015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS41_06015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS41_06015 PF00384 Molybdopterin oxidoreductase CVS41_06015 PF01568 Molydopterin dinucleotide binding domain CVS41_06015 PF12838 4Fe-4S dicluster domain CVS41_06015 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS41_06015 PF00384 Molybdopterin oxidoreductase CVS41_06015 PF01568 Molydopterin dinucleotide binding domain CVS41_06015 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS41_06020 PF13247 4Fe-4S dicluster domain CVS41_06040 PF03949 Malic enzyme, NAD binding domain CVS41_06040 PF00390 Malic enzyme, N-terminal domain CVS41_06045 PF05433 Glycine zipper 2TM domain CVS41_06045 PF16998 17 kDa outer membrane surface antigen CVS41_06055 PF00860 Permease family CVS41_06060 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_06065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_06065 PF00672 HAMP domain CVS41_06090 PF00589 Phage integrase family CVS41_06090 PF02899 Phage integrase, N-terminal SAM-like domain CVS41_06155 PF11798 IMS family HHH motif CVS41_06155 PF13438 Domain of unknown function (DUF4113) CVS41_06155 PF00817 impB/mucB/samB family CVS41_06155 PF11799 impB/mucB/samB family C-terminal domain CVS41_06160 PF00717 Peptidase S24-like CVS41_06175 PF18019 HD domain CVS41_06175 PF18395 Cas3 C-terminal domain CVS41_06180 PF09481 CRISPR-associated protein Cse1 (CRISPR_cse1) CVS41_06190 PF09344 CT1975-like protein CVS41_06200 PF08798 CRISPR associated protein CVS41_06205 PF01867 CRISPR associated protein Cas1 CVS41_06210 PF09707 CRISPR-associated protein (Cas_Cas2CT1978) CVS41_06250 PF02685 Glucokinase CVS41_06255 PF01418 Helix-turn-helix domain, rpiR family CVS41_06255 PF01380 SIS domain CVS41_06260 PF00224 Pyruvate kinase, barrel domain CVS41_06260 PF02887 Pyruvate kinase, alpha/beta domain CVS41_06270 PF07969 Amidohydrolase family CVS41_06280 PF02049 Flagellar hook-basal body complex protein FliE CVS41_06285 PF08345 Flagellar M-ring protein C-terminal CVS41_06285 PF01514 Secretory protein of YscJ/FliF family CVS41_06290 PF14842 FliG N-terminal domain CVS41_06290 PF14841 FliG middle domain CVS41_06290 PF01706 FliG C-terminal domain CVS41_06300 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS41_06300 PF18269 T3SS EscN ATPase C-terminal domain CVS41_06320 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CVS41_06320 PF02154 Flagellar motor switch protein FliM CVS41_06325 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CVS41_06330 PF04347 Flagellar biosynthesis protein, FliO CVS41_06335 PF00813 FliP family CVS41_06340 PF01313 Bacterial export proteins, family 3 CVS41_06345 PF01311 Bacterial export proteins, family 1 CVS41_06350 PF01312 FlhB HrpN YscU SpaS Family CVS41_06355 PF00771 FHIPEP family CVS41_06360 PF00448 SRP54-type protein, GTPase domain CVS41_06365 PF10609 NUBPL iron-transfer P-loop NTPase CVS41_06370 PF04545 Sigma-70, region 4 CVS41_06370 PF04542 Sigma-70 region 2 CVS41_06370 PF04539 Sigma-70 region 3 CVS41_06375 PF00072 Response regulator receiver domain CVS41_06380 PF04344 Chemotaxis phosphatase, CheZ CVS41_06385 PF07194 P2 response regulator binding domain CVS41_06385 PF01627 Hpt domain CVS41_06385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_06385 PF01584 CheW-like domain CVS41_06385 PF02895 Signal transducing histidine kinase, homodimeric domain CVS41_06390 PF01339 CheB methylesterase CVS41_06390 PF00072 Response regulator receiver domain CVS41_06395 PF01618 MotA/TolQ/ExbB proton channel family CVS41_06400 PF13677 Membrane MotB of proton-channel complex MotA/MotB CVS41_06400 PF00691 OmpA family CVS41_06405 PF13614 AAA domain CVS41_06415 PF01584 CheW-like domain CVS41_06425 PF00005 ABC transporter CVS41_06430 PF03379 CcmB protein CVS41_06435 PF01578 Cytochrome C assembly protein CVS41_06440 PF04995 Heme exporter protein D (CcmD) CVS41_06445 PF03100 CcmE CVS41_06450 PF01578 Cytochrome C assembly protein CVS41_06450 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CVS41_06455 PF08534 Redoxin CVS41_06460 PF03918 Cytochrome C biogenesis protein CVS41_06470 PF04333 MlaA lipoprotein CVS41_06475 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CVS41_06475 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CVS41_06480 PF00462 Glutaredoxin CVS41_06485 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_06490 PF03222 Tryptophan/tyrosine permease family CVS41_06495 PF00871 Acetokinase family CVS41_06500 PF02901 Pyruvate formate lyase-like CVS41_06500 PF01228 Glycine radical CVS41_06505 PF01042 Endoribonuclease L-PSP CVS41_06510 PF01189 16S rRNA methyltransferase RsmB/F CVS41_06510 PF01029 NusB family CVS41_06540 PF01243 Pyridoxamine 5'-phosphate oxidase CVS41_06540 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CVS41_06545 PF13417 Glutathione S-transferase, N-terminal domain CVS41_06565 PF08007 Cupin superfamily protein CVS41_06570 PF08328 Adenylosuccinate lyase C-terminal CVS41_06570 PF00206 Lyase CVS41_06575 PF04356 Protein of unknown function (DUF489) CVS41_06585 PF00293 NUDIX domain CVS41_06590 PF00849 RNA pseudouridylate synthase CVS41_06600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_06605 PF07690 Major Facilitator Superfamily CVS41_06610 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_06610 PF02378 Phosphotransferase system, EIIC CVS41_06610 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_06635 PF00210 Ferritin-like domain CVS41_06665 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS41_06665 PF00356 Bacterial regulatory proteins, lacI family CVS41_06675 PF00367 phosphotransferase system, EIIB CVS41_06675 PF02378 Phosphotransferase system, EIIC CVS41_06680 PF00155 Aminotransferase class I and II CVS41_06685 PF02075 Crossover junction endodeoxyribonuclease RuvC CVS41_06695 PF00873 AcrB/AcrD/AcrF family CVS41_06700 PF09317 Domain of unknown function (DUF1974) CVS41_06700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS41_06700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS41_06700 PF02770 Acyl-CoA dehydrogenase, middle domain CVS41_06705 PF00440 Bacterial regulatory proteins, tetR family CVS41_06720 PF00580 UvrD/REP helicase N-terminal domain CVS41_06720 PF13361 UvrD-like helicase C-terminal domain CVS41_06720 PF12462 DNA helicase IV / RNA helicase N terminal CVS41_06735 PF02384 N-6 DNA Methylase CVS41_06735 PF12161 HsdM N-terminal domain CVS41_06745 PF01420 Type I restriction modification DNA specificity domain CVS41_06755 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CVS41_06755 PF00271 Helicase conserved C-terminal domain CVS41_06755 PF04851 Type III restriction enzyme, res subunit CVS41_06755 PF08463 EcoEI R protein C-terminal CVS41_06765 PF02796 Helix-turn-helix domain of resolvase CVS41_06765 PF00239 Resolvase, N terminal domain CVS41_06805 PF00480 ROK family CVS41_06810 PF13181 Tetratricopeptide repeat CVS41_06810 PF17128 Domain of unknown function (DUF5107) CVS41_06815 PF00083 Sugar (and other) transporter CVS41_06825 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS41_06825 PF01568 Molydopterin dinucleotide binding domain CVS41_06825 PF12838 4Fe-4S dicluster domain CVS41_06825 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS41_06825 PF00384 Molybdopterin oxidoreductase CVS41_06830 PF00563 EAL domain CVS41_06830 PF00990 Diguanylate cyclase, GGDEF domain CVS41_06830 PF03707 Bacterial signalling protein N terminal repeat CVS41_06835 PF00512 His Kinase A (phospho-acceptor) domain CVS41_06835 PF09456 RcsC Alpha-Beta-Loop (ABL) CVS41_06835 PF00072 Response regulator receiver domain CVS41_06835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_06845 PF01668 SmpB protein CVS41_06850 PF03364 Polyketide cyclase / dehydrase and lipid transport CVS41_06860 PF07687 Peptidase dimerisation domain CVS41_06860 PF01546 Peptidase family M20/M25/M40 CVS41_06865 PF09317 Domain of unknown function (DUF1974) CVS41_06865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS41_06865 PF02770 Acyl-CoA dehydrogenase, middle domain CVS41_06865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS41_06870 PF13580 SIS domain CVS41_06875 PF13230 Glutamine amidotransferases class-II CVS41_06885 PF01933 Uncharacterised protein family UPF0052 CVS41_06895 PF00072 Response regulator receiver domain CVS41_06895 PF00512 His Kinase A (phospho-acceptor) domain CVS41_06895 PF09456 RcsC Alpha-Beta-Loop (ABL) CVS41_06895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_06905 PF00072 Response regulator receiver domain CVS41_06905 PF00196 Bacterial regulatory proteins, luxR family CVS41_06910 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CVS41_06910 PF07730 Histidine kinase CVS41_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_06910 PF00672 HAMP domain CVS41_06915 PF06463 Molybdenum Cofactor Synthesis C CVS41_06915 PF04055 Radical SAM superfamily CVS41_06920 PF12838 4Fe-4S dicluster domain CVS41_06920 PF13187 4Fe-4S dicluster domain CVS41_06930 PF00384 Molybdopterin oxidoreductase CVS41_06930 PF01568 Molydopterin dinucleotide binding domain CVS41_06930 PF10518 TAT (twin-arginine translocation) pathway signal sequence CVS41_06930 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS41_06935 PF12838 4Fe-4S dicluster domain CVS41_06935 PF12800 4Fe-4S binding domain CVS41_06940 PF12837 4Fe-4S binding domain CVS41_06940 PF12801 4Fe-4S binding domain CVS41_06945 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CVS41_06950 PF03264 NapC/NirT cytochrome c family, N-terminal region CVS41_06955 PF00994 Probable molybdopterin binding domain CVS41_06960 PF01967 MoaC family CVS41_06965 PF02597 ThiS family CVS41_06970 PF02391 MoaE protein CVS41_06980 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_06985 PF00005 ABC transporter CVS41_06985 PF03459 TOBE domain CVS41_06990 PF12697 Alpha/beta hydrolase family CVS41_06995 PF00899 ThiF family CVS41_07000 PF00994 Probable molybdopterin binding domain CVS41_07000 PF03454 MoeA C-terminal region (domain IV) CVS41_07000 PF03453 MoeA N-terminal region (domain I and II) CVS41_07005 PF01227 GTP cyclohydrolase I CVS41_07010 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_07010 PF17200 Single Cache domain 2 CVS41_07010 PF00672 HAMP domain CVS41_07015 PF01268 Formate--tetrahydrofolate ligase CVS41_07025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_07025 PF03466 LysR substrate binding domain CVS41_07030 PF04264 YceI-like domain CVS41_07040 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CVS41_07040 PF05221 S-adenosyl-L-homocysteine hydrolase CVS41_07055 PF01546 Peptidase family M20/M25/M40 CVS41_07055 PF07687 Peptidase dimerisation domain CVS41_07065 PF17944 Arginine decarboxylase C-terminal helical extension CVS41_07065 PF17810 Arginine decarboxylase helical bundle domain CVS41_07065 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS41_07075 PF00753 Metallo-beta-lactamase superfamily CVS41_07075 PF14863 Alkyl sulfatase dimerisation CVS41_07075 PF14864 Alkyl sulfatase C-terminal CVS41_07090 PF00672 HAMP domain CVS41_07090 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_07090 PF12729 Four helix bundle sensory module for signal transduction CVS41_07100 PF01042 Endoribonuclease L-PSP CVS41_07105 PF03313 Serine dehydratase alpha chain CVS41_07110 PF13309 HTH domain CVS41_07110 PF08348 YheO-like PAS domain CVS41_07115 PF00300 Histidine phosphatase superfamily (branch 1) CVS41_07120 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CVS41_07120 PF07055 Enoyl reductase FAD binding domain CVS41_07120 PF12241 Trans-2-enoyl-CoA reductase catalytic region CVS41_07125 PF03606 C4-dicarboxylate anaerobic carrier CVS41_07130 PF00155 Aminotransferase class I and II CVS41_07140 PF00230 Major intrinsic protein CVS41_07145 PF01464 Transglycosylase SLT domain CVS41_07145 PF01551 Peptidase family M23 CVS41_07145 PF10145 Phage-related minor tail protein CVS41_07160 PF13396 Phospholipase_D-nuclease N-terminal CVS41_07160 PF13091 PLD-like domain CVS41_07170 PF00551 Formyl transferase CVS41_07170 PF01842 ACT domain CVS41_07175 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CVS41_07185 PF00085 Thioredoxin CVS41_07190 PF01648 4'-phosphopantetheinyl transferase superfamily CVS41_07195 PF00877 NlpC/P60 family CVS41_07200 PF05971 RNA methyltransferase CVS41_07210 PF00939 Sodium:sulfate symporter transmembrane region CVS41_07220 PF01476 LysM domain CVS41_07220 PF03734 L,D-transpeptidase catalytic domain CVS41_07220 PF17969 L,D-transpeptidase C-terminal domain CVS41_07230 PF00873 AcrB/AcrD/AcrF family CVS41_07235 PF00529 HlyD membrane-fusion protein of T1SS CVS41_07235 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_07240 PF00486 Transcriptional regulatory protein, C terminal CVS41_07240 PF00072 Response regulator receiver domain CVS41_07245 PF00672 HAMP domain CVS41_07245 PF00512 His Kinase A (phospho-acceptor) domain CVS41_07245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_07250 PF04434 SWIM zinc finger CVS41_07250 PF00176 SNF2 family N-terminal domain CVS41_07250 PF00271 Helicase conserved C-terminal domain CVS41_07255 PF05472 DNA replication terminus site-binding protein (Ter protein) CVS41_07265 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CVS41_07270 PF01476 LysM domain CVS41_07270 PF01464 Transglycosylase SLT domain CVS41_07275 PF00753 Metallo-beta-lactamase superfamily CVS41_07275 PF16123 Hydroxyacylglutathione hydrolase C-terminus CVS41_07280 PF08241 Methyltransferase domain CVS41_07285 PF00075 RNase H CVS41_07290 PF00929 Exonuclease CVS41_07300 PF11849 Domain of unknown function (DUF3369) CVS41_07305 PF08021 Siderophore-interacting FAD-binding domain CVS41_07305 PF04954 Siderophore-interacting protein CVS41_07310 PF01032 FecCD transport family CVS41_07315 PF01032 FecCD transport family CVS41_07320 PF00005 ABC transporter CVS41_07335 PF00873 AcrB/AcrD/AcrF family CVS41_07340 PF00529 HlyD membrane-fusion protein of T1SS CVS41_07340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_07350 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CVS41_07365 PF00873 AcrB/AcrD/AcrF family CVS41_07370 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_07375 PF03372 Endonuclease/Exonuclease/phosphatase family CVS41_07390 PF02424 ApbE family CVS41_07395 PF00127 Copper binding proteins, plastocyanin/azurin family CVS41_07405 PF04337 Protein of unknown function, DUF480 CVS41_07410 PF00990 Diguanylate cyclase, GGDEF domain CVS41_07410 PF13188 PAS domain CVS41_07410 PF03707 Bacterial signalling protein N terminal repeat CVS41_07410 PF00563 EAL domain CVS41_07420 PF04325 Protein of unknown function (DUF465) CVS41_07430 PF01554 MatE CVS41_07455 PF00465 Iron-containing alcohol dehydrogenase CVS41_07465 PF08359 YsiA-like protein, C-terminal region CVS41_07465 PF00440 Bacterial regulatory proteins, tetR family CVS41_07470 PF00171 Aldehyde dehydrogenase family CVS41_07480 PF01156 Inosine-uridine preferring nucleoside hydrolase CVS41_07490 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS41_07490 PF00034 Cytochrome c CVS41_07500 PF05656 Protein of unknown function (DUF805) CVS41_07520 PF00672 HAMP domain CVS41_07520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_07525 PF01238 Phosphomannose isomerase type I CVS41_07530 PF12833 Helix-turn-helix domain CVS41_07535 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS41_07545 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_07555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_07555 PF03466 LysR substrate binding domain CVS41_07565 PF00877 NlpC/P60 family CVS41_07570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_07570 PF03466 LysR substrate binding domain CVS41_07575 PF00578 AhpC/TSA family CVS41_07575 PF10417 C-terminal domain of 1-Cys peroxiredoxin CVS41_07595 PF08003 Protein of unknown function (DUF1698) CVS41_07600 PF13649 Methyltransferase domain CVS41_07605 PF01904 Protein of unknown function DUF72 CVS41_07615 PF01336 OB-fold nucleic acid binding domain CVS41_07615 PF02938 GAD domain CVS41_07615 PF00152 tRNA synthetases class II (D, K and N) CVS41_07620 PF01709 Transcriptional regulator CVS41_07625 PF00171 Aldehyde dehydrogenase family CVS41_07625 PF00465 Iron-containing alcohol dehydrogenase CVS41_07630 PF01914 MarC family integral membrane protein CVS41_07635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_07640 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_07645 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_07645 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_07650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_07650 PF00005 ABC transporter CVS41_07655 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_07655 PF00005 ABC transporter CVS41_07660 PF03741 Integral membrane protein TerC family CVS41_07665 PF01168 Alanine racemase, N-terminal domain CVS41_07665 PF00842 Alanine racemase, C-terminal domain CVS41_07675 PF00437 Type II/IV secretion system protein CVS41_07690 PF01032 FecCD transport family CVS41_07695 PF00005 ABC transporter CVS41_07700 PF00793 DAHP synthetase I family CVS41_07705 PF01219 Prokaryotic diacylglycerol kinase CVS41_07710 PF01842 ACT domain CVS41_07710 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS41_07710 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_07715 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CVS41_07720 PF01812 5-formyltetrahydrofolate cyclo-ligase family CVS41_07735 PF01113 Dihydrodipicolinate reductase, N-terminus CVS41_07735 PF05173 Dihydrodipicolinate reductase, C-terminus CVS41_07740 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CVS41_07740 PF00117 Glutamine amidotransferase class-I CVS41_07745 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CVS41_07745 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS41_07745 PF02142 MGS-like domain CVS41_07750 PF07759 Protein of unknown function (DUF1615) CVS41_07755 PF01817 Chorismate mutase type II CVS41_07755 PF02153 Prephenate dehydrogenase CVS41_07760 PF00793 DAHP synthetase I family CVS41_07765 PF00483 Nucleotidyl transferase CVS41_07770 PF02355 Protein export membrane protein CVS41_07770 PF07549 SecD/SecF GG Motif CVS41_07775 PF02355 Protein export membrane protein CVS41_07775 PF13721 SecD export protein N-terminal TM region CVS41_07775 PF07549 SecD/SecF GG Motif CVS41_07810 PF01230 HIT domain CVS41_07815 PF00672 HAMP domain CVS41_07815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_07825 PF01979 Amidohydrolase family CVS41_07840 PF00375 Sodium:dicarboxylate symporter family CVS41_07845 PF13426 PAS domain CVS41_07845 PF08447 PAS fold CVS41_07845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_07855 PF05661 Protein of unknown function (DUF808) CVS41_07860 PF01432 Peptidase family M3 CVS41_07860 PF08439 Oligopeptidase F CVS41_07865 PF00860 Permease family CVS41_07870 PF05728 Uncharacterised protein family (UPF0227) CVS41_07875 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_07885 PF04055 Radical SAM superfamily CVS41_07890 PF03707 Bacterial signalling protein N terminal repeat CVS41_07890 PF00990 Diguanylate cyclase, GGDEF domain CVS41_07890 PF00563 EAL domain CVS41_07895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS41_07895 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_07905 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CVS41_07905 PF07678 A-macroglobulin TED domain CVS41_07905 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain CVS41_07905 PF17962 Bacterial macroglobulin domain 6 CVS41_07905 PF01835 MG2 domain CVS41_07905 PF00207 Alpha-2-macroglobulin family CVS41_07905 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CVS41_07905 PF07703 Alpha-2-macroglobulin bait region domain CVS41_07905 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CVS41_07910 PF06832 Penicillin-Binding Protein C-terminus Family CVS41_07910 PF00905 Penicillin binding protein transpeptidase domain CVS41_07910 PF00912 Transglycosylase CVS41_07925 PF02926 THUMP domain CVS41_07925 PF02568 Thiamine biosynthesis protein (ThiI) CVS41_07935 PF03458 UPF0126 domain CVS41_07940 PF00669 Bacterial flagellin N-terminal helical region CVS41_07940 PF07196 Flagellin hook IN motif CVS41_07940 PF00700 Bacterial flagellin C-terminal helical region CVS41_07945 PF00700 Bacterial flagellin C-terminal helical region CVS41_07945 PF00669 Bacterial flagellin N-terminal helical region CVS41_07945 PF07196 Flagellin hook IN motif CVS41_07955 PF07196 Flagellin hook IN motif CVS41_07955 PF07195 Flagellar hook-associated protein 2 C-terminus CVS41_07955 PF02465 Flagellar hook-associated protein 2 N-terminus CVS41_07960 PF02561 Flagellar protein FliS CVS41_07995 PF09940 Domain of unknown function (DUF2172) CVS41_07995 PF16254 Domain of unknown function (DUF4910) CVS41_07995 PF16221 winged helix-turn-helix CVS41_08010 PF03102 NeuB family CVS41_08010 PF08666 SAF domain CVS41_08020 PF02348 Cytidylyltransferase CVS41_08040 PF00501 AMP-binding enzyme CVS41_08040 PF13193 AMP-binding enzyme C-terminal domain CVS41_08055 PF00535 Glycosyl transferase family 2 CVS41_08065 PF03275 UDP-galactopyranose mutase CVS41_08075 PF00535 Glycosyl transferase family 2 CVS41_08095 PF01209 ubiE/COQ5 methyltransferase family CVS41_08100 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CVS41_08105 PF02719 Polysaccharide biosynthesis protein CVS41_08110 PF01497 Periplasmic binding protein CVS41_08120 PF01048 Phosphorylase superfamily CVS41_08125 PF02535 ZIP Zinc transporter CVS41_08135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS41_08140 PF10576 Iron-sulfur binding domain of endonuclease III CVS41_08140 PF00633 Helix-hairpin-helix motif CVS41_08140 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS41_08145 PF02508 Rnf-Nqr subunit, membrane protein CVS41_08150 PF04205 FMN-binding domain CVS41_08155 PF03116 NQR2, RnfD, RnfE family CVS41_08160 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVS41_08160 PF10531 SLBB domain CVS41_08160 PF12838 4Fe-4S dicluster domain CVS41_08160 PF13375 RnfC Barrel sandwich hybrid domain CVS41_08165 PF04060 Putative Fe-S cluster CVS41_08170 PF02508 Rnf-Nqr subunit, membrane protein CVS41_08175 PF01844 HNH endonuclease CVS41_08185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS41_08195 PF00849 RNA pseudouridylate synthase CVS41_08195 PF01479 S4 domain CVS41_08200 PF07690 Major Facilitator Superfamily CVS41_08205 PF03466 LysR substrate binding domain CVS41_08205 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_08210 PF10689 Protein of unknown function (DUF2496) CVS41_08225 PF04391 Protein of unknown function (DUF533) CVS41_08235 PF00155 Aminotransferase class I and II CVS41_08235 PF00392 Bacterial regulatory proteins, gntR family CVS41_08240 PF01654 Cytochrome bd terminal oxidase subunit I CVS41_08245 PF02322 Cytochrome bd terminal oxidase subunit II CVS41_08265 PF05114 Protein of unknown function (DUF692) CVS41_08280 PF02525 Flavodoxin-like fold CVS41_08285 PF07690 Major Facilitator Superfamily CVS41_08295 PF00248 Aldo/keto reductase family CVS41_08310 PF03466 LysR substrate binding domain CVS41_08310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_08320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_08320 PF00672 HAMP domain CVS41_08320 PF02743 Cache domain CVS41_08325 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CVS41_08325 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CVS41_08330 PF00230 Major intrinsic protein CVS41_08335 PF07690 Major Facilitator Superfamily CVS41_08340 PF08220 DeoR-like helix-turn-helix domain CVS41_08340 PF00455 DeoR C terminal sensor domain CVS41_08345 PF01266 FAD dependent oxidoreductase CVS41_08345 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CVS41_08350 PF03009 Glycerophosphoryl diester phosphodiesterase family CVS41_08355 PF03974 Ecotin CVS41_08360 PF04219 Protein of unknown function, DUF CVS41_08365 PF03466 LysR substrate binding domain CVS41_08365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_08375 PF00155 Aminotransferase class I and II CVS41_08390 PF00753 Metallo-beta-lactamase superfamily CVS41_08390 PF03772 Competence protein CVS41_08395 PF00005 ABC transporter CVS41_08395 PF00664 ABC transporter transmembrane region CVS41_08400 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CVS41_08405 PF03966 Trm112p-like protein CVS41_08410 PF02348 Cytidylyltransferase CVS41_08415 PF00072 Response regulator receiver domain CVS41_08415 PF00196 Bacterial regulatory proteins, luxR family CVS41_08420 PF01541 GIY-YIG catalytic domain CVS41_08420 PF08459 UvrC Helix-hairpin-helix N-terminal CVS41_08420 PF02151 UvrB/uvrC motif CVS41_08425 PF01066 CDP-alcohol phosphatidyltransferase CVS41_08445 PF13356 Arm DNA-binding domain CVS41_08445 PF00589 Phage integrase family CVS41_08520 PF00733 Asparagine synthase CVS41_08520 PF13537 Glutamine amidotransferase domain CVS41_08530 PF02254 TrkA-N domain CVS41_08530 PF00999 Sodium/hydrogen exchanger family CVS41_08535 PF13344 Haloacid dehalogenase-like hydrolase CVS41_08540 PF00962 Adenosine/AMP deaminase CVS41_08545 PF08240 Alcohol dehydrogenase GroES-like domain CVS41_08545 PF00107 Zinc-binding dehydrogenase CVS41_08550 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS41_08555 PF03741 Integral membrane protein TerC family CVS41_08555 PF03471 Transporter associated domain CVS41_08565 PF02913 FAD linked oxidases, C-terminal domain CVS41_08565 PF13183 4Fe-4S dicluster domain CVS41_08565 PF01565 FAD binding domain CVS41_08575 PF03061 Thioesterase superfamily CVS41_08580 PF00271 Helicase conserved C-terminal domain CVS41_08580 PF00270 DEAD/DEAH box helicase CVS41_08580 PF03880 DbpA RNA binding domain CVS41_08585 PF03553 Na+/H+ antiporter family CVS41_08585 PF13726 Na+-H+ antiporter family CVS41_08590 PF00929 Exonuclease CVS41_08595 PF01569 PAP2 superfamily CVS41_08600 PF11890 Domain of unknown function (DUF3410) CVS41_08600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_08600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS41_08605 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS41_08605 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS41_08615 PF01416 tRNA pseudouridine synthase CVS41_08620 PF01039 Carboxyl transferase domain CVS41_08620 PF17848 Acetyl-coA carboxylase zinc finger domain CVS41_08625 PF02875 Mur ligase family, glutamate ligase domain CVS41_08625 PF08245 Mur ligase middle domain CVS41_08630 PF05036 Sporulation related domain CVS41_08635 PF01906 Putative heavy-metal-binding CVS41_08645 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS41_08645 PF14824 Sirohaem biosynthesis protein central CVS41_08645 PF10414 Sirohaem synthase dimerisation region CVS41_08650 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS41_08650 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS41_08650 PF13187 4Fe-4S dicluster domain CVS41_08655 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CVS41_08655 PF00175 Oxidoreductase NAD-binding domain CVS41_08660 PF17179 4Fe-4S dicluster domain CVS41_08665 PF01734 Patatin-like phospholipase CVS41_08670 PF02016 LD-carboxypeptidase N-terminal domain CVS41_08670 PF17676 LD-carboxypeptidase C-terminal domain CVS41_08675 PF00884 Sulfatase CVS41_08685 PF01842 ACT domain CVS41_08685 PF00696 Amino acid kinase family CVS41_08690 PF00583 Acetyltransferase (GNAT) family CVS41_08690 PF00696 Amino acid kinase family CVS41_08695 PF01625 Peptide methionine sulfoxide reductase CVS41_08715 PF00561 alpha/beta hydrolase fold CVS41_08720 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CVS41_08735 PF00005 ABC transporter CVS41_08745 PF03600 Citrate transporter CVS41_08750 PF07690 Major Facilitator Superfamily CVS41_08770 PF01593 Flavin containing amine oxidoreductase CVS41_08775 PF03239 Iron permease FTR1 family CVS41_08790 PF03350 Uncharacterized protein family, UPF0114 CVS41_08810 PF01740 STAS domain CVS41_08810 PF00916 Sulfate permease family CVS41_08825 PF03706 Lysylphosphatidylglycerol synthase TM region CVS41_08825 PF09924 Uncharacterised conserved protein (DUF2156) CVS41_08835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_08835 PF00512 His Kinase A (phospho-acceptor) domain CVS41_08835 PF00672 HAMP domain CVS41_08840 PF00486 Transcriptional regulatory protein, C terminal CVS41_08840 PF00072 Response regulator receiver domain CVS41_08860 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CVS41_08860 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CVS41_08865 PF00313 'Cold-shock' DNA-binding domain CVS41_08870 PF02617 ATP-dependent Clp protease adaptor protein ClpS CVS41_08875 PF17871 AAA lid domain CVS41_08875 PF10431 C-terminal, D2-small domain, of ClpB protein CVS41_08875 PF07724 AAA domain (Cdc48 subfamily) CVS41_08875 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_08875 PF02861 Clp amino terminal domain, pathogenicity island component CVS41_08880 PF01176 Translation initiation factor 1A / IF-1 CVS41_08885 PF04377 Arginine-tRNA-protein transferase, C terminus CVS41_08885 PF04376 Arginine-tRNA-protein transferase, N terminus CVS41_08890 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CVS41_08895 PF05433 Glycine zipper 2TM domain CVS41_08900 PF17158 Membrane-associated sensor, integral membrane domain CVS41_08900 PF00990 Diguanylate cyclase, GGDEF domain CVS41_08905 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_08910 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CVS41_08910 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CVS41_08915 PF01037 Lrp/AsnC ligand binding domain CVS41_08920 PF17854 FtsK alpha domain CVS41_08920 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CVS41_08920 PF09397 Ftsk gamma domain CVS41_08920 PF01580 FtsK/SpoIIIE family CVS41_08925 PF03548 Outer membrane lipoprotein carrier protein LolA CVS41_08930 PF12002 MgsA AAA+ ATPase C terminal CVS41_08930 PF16193 AAA C-terminal domain CVS41_08930 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_08935 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS41_08935 PF02403 Seryl-tRNA synthetase N-terminal domain CVS41_08940 PF02674 Colicin V production protein CVS41_08945 PF00156 Phosphoribosyl transferase domain CVS41_08950 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CVS41_08955 PF05191 Adenylate kinase, active site lid CVS41_08960 PF00762 Ferrochelatase CVS41_08970 PF00294 pfkB family carbohydrate kinase CVS41_08985 PF03707 Bacterial signalling protein N terminal repeat CVS41_08985 PF00990 Diguanylate cyclase, GGDEF domain CVS41_08985 PF00563 EAL domain CVS41_08990 PF00483 Nucleotidyl transferase CVS41_09000 PF07273 Protein of unknown function (DUF1439) CVS41_09010 PF11143 Protein of unknown function (DUF2919) CVS41_09015 PF01544 CorA-like Mg2+ transporter protein CVS41_09025 PF01012 Electron transfer flavoprotein domain CVS41_09030 PF00766 Electron transfer flavoprotein FAD-binding domain CVS41_09030 PF01012 Electron transfer flavoprotein domain CVS41_09035 PF00266 Aminotransferase class-V CVS41_09040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVS41_09045 PF00793 DAHP synthetase I family CVS41_09050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_09050 PF00672 HAMP domain CVS41_09055 PF04055 Radical SAM superfamily CVS41_09060 PF00271 Helicase conserved C-terminal domain CVS41_09060 PF00270 DEAD/DEAH box helicase CVS41_09065 PF00255 Glutathione peroxidase CVS41_09075 PF01820 D-ala D-ala ligase N-terminus CVS41_09075 PF07478 D-ala D-ala ligase C-terminus CVS41_09080 PF07748 Glycosyl hydrolases family 38 C-terminal domain CVS41_09080 PF01074 Glycosyl hydrolases family 38 N-terminal domain CVS41_09080 PF09261 Alpha mannosidase middle domain CVS41_09085 PF02378 Phosphotransferase system, EIIC CVS41_09085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_09085 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_09090 PF07702 UTRA domain CVS41_09090 PF00392 Bacterial regulatory proteins, gntR family CVS41_09095 PF02601 Exonuclease VII, large subunit CVS41_09095 PF13742 OB-fold nucleic acid binding domain CVS41_09100 PF01373 Glycosyl hydrolase family 14 CVS41_09100 PF03423 Carbohydrate binding domain (family 25) CVS41_09100 PF00128 Alpha amylase, catalytic domain CVS41_09115 PF00478 IMP dehydrogenase / GMP reductase domain CVS41_09115 PF00571 CBS domain CVS41_09120 PF02540 NAD synthase CVS41_09120 PF00958 GMP synthase C terminal domain CVS41_09120 PF00117 Glutamine amidotransferase class-I CVS41_09140 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CVS41_09140 PF12833 Helix-turn-helix domain CVS41_09140 PF02805 Metal binding domain of Ada CVS41_09140 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS41_09155 PF05724 Thiopurine S-methyltransferase (TPMT) CVS41_09160 PF16187 Middle or third domain of peptidase_M16 CVS41_09160 PF05193 Peptidase M16 inactive domain CVS41_09160 PF00675 Insulinase (Peptidase family M16) CVS41_09165 PF00300 Histidine phosphatase superfamily (branch 1) CVS41_09175 PF00892 EamA-like transporter family CVS41_09180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_09185 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CVS41_09190 PF00271 Helicase conserved C-terminal domain CVS41_09190 PF03461 TRCF domain CVS41_09190 PF17757 UvrB interaction domain CVS41_09190 PF00270 DEAD/DEAH box helicase CVS41_09190 PF02559 CarD-like/TRCF domain CVS41_09200 PF02687 FtsX-like permease family CVS41_09200 PF12704 MacB-like periplasmic core domain CVS41_09205 PF00005 ABC transporter CVS41_09210 PF12704 MacB-like periplasmic core domain CVS41_09210 PF02687 FtsX-like permease family CVS41_09230 PF05697 Bacterial trigger factor protein (TF) CVS41_09230 PF05698 Bacterial trigger factor protein (TF) C-terminus CVS41_09230 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_09235 PF00574 Clp protease CVS41_09240 PF06689 ClpX C4-type zinc finger CVS41_09240 PF07724 AAA domain (Cdc48 subfamily) CVS41_09240 PF10431 C-terminal, D2-small domain, of ClpB protein CVS41_09245 PF02190 ATP-dependent protease La (LON) substrate-binding domain CVS41_09245 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_09245 PF05362 Lon protease (S16) C-terminal proteolytic domain CVS41_09250 PF00216 Bacterial DNA-binding protein CVS41_09255 PF13145 PPIC-type PPIASE domain CVS41_09260 PF00005 ABC transporter CVS41_09260 PF12848 ABC transporter CVS41_09265 PF00474 Sodium:solute symporter family CVS41_09270 PF04341 Protein of unknown function, DUF485 CVS41_09285 PF00378 Enoyl-CoA hydratase/isomerase CVS41_09290 PF01235 Sodium:alanine symporter family CVS41_09300 PF06167 Glucose-regulated metallo-peptidase M90 CVS41_09320 PF01266 FAD dependent oxidoreductase CVS41_09325 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_09330 PF00005 ABC transporter CVS41_09340 PF00392 Bacterial regulatory proteins, gntR family CVS41_09340 PF07702 UTRA domain CVS41_09345 PF00266 Aminotransferase class-V CVS41_09370 PF03918 Cytochrome C biogenesis protein CVS41_09375 PF08534 Redoxin CVS41_09380 PF01578 Cytochrome C assembly protein CVS41_09380 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CVS41_09385 PF03916 Polysulphide reductase, NrfD CVS41_09390 PF00037 4Fe-4S binding domain CVS41_09390 PF13247 4Fe-4S dicluster domain CVS41_09395 PF13435 Cytochrome c554 and c-prime CVS41_09395 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CVS41_09400 PF02335 Cytochrome c552 CVS41_09410 PF13183 4Fe-4S dicluster domain CVS41_09410 PF02754 Cysteine-rich domain CVS41_09415 PF00890 FAD binding domain CVS41_09420 PF04324 BFD-like [2Fe-2S] binding domain CVS41_09420 PF01266 FAD dependent oxidoreductase CVS41_09425 PF02810 SEC-C motif CVS41_09430 PF17200 Single Cache domain 2 CVS41_09430 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_09430 PF00672 HAMP domain CVS41_09435 PF01047 MarR family CVS41_09435 PF00480 ROK family CVS41_09445 PF01925 Sulfite exporter TauE/SafE CVS41_09450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_09450 PF03466 LysR substrate binding domain CVS41_09460 PF12833 Helix-turn-helix domain CVS41_09460 PF14525 AraC-binding-like domain CVS41_09465 PF11398 Protein of unknown function (DUF2813) CVS41_09475 PF00128 Alpha amylase, catalytic domain CVS41_09475 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS41_09500 PF00883 Cytosol aminopeptidase family, catalytic domain CVS41_09500 PF02789 Cytosol aminopeptidase family, N-terminal domain CVS41_09505 PF13419 Haloacid dehalogenase-like hydrolase CVS41_09520 PF01207 Dihydrouridine synthase (Dus) CVS41_09525 PF04304 Protein of unknown function (DUF454) CVS41_09530 PF00156 Phosphoribosyl transferase domain CVS41_09535 PF12170 DNA polymerase III tau subunit V interacting with alpha CVS41_09535 PF12169 DNA polymerase III subunits gamma and tau domain III CVS41_09535 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding CVS41_09540 PF02575 YbaB/EbfC DNA-binding family CVS41_09550 PF01261 Xylose isomerase-like TIM barrel CVS41_09555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_09555 PF03466 LysR substrate binding domain CVS41_09565 PF03279 Bacterial lipid A biosynthesis acyltransferase CVS41_09570 PF03279 Bacterial lipid A biosynthesis acyltransferase CVS41_09585 PF17151 Periplasmic sensor domain CVS41_09585 PF00990 Diguanylate cyclase, GGDEF domain CVS41_09595 PF03104 DNA polymerase family B, exonuclease domain CVS41_09595 PF00136 DNA polymerase family B CVS41_09610 PF01863 Protein of unknown function DUF45 CVS41_09625 PF03606 C4-dicarboxylate anaerobic carrier CVS41_09640 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CVS41_09640 PF01266 FAD dependent oxidoreductase CVS41_09645 PF02801 Beta-ketoacyl synthase, C-terminal domain CVS41_09645 PF00109 Beta-ketoacyl synthase, N-terminal domain CVS41_09655 PF06826 Predicted Permease Membrane Region CVS41_09655 PF02080 TrkA-C domain CVS41_09670 PF12344 Ultra-violet resistance protein B CVS41_09670 PF17757 UvrB interaction domain CVS41_09670 PF00271 Helicase conserved C-terminal domain CVS41_09670 PF02151 UvrB/uvrC motif CVS41_09670 PF04851 Type III restriction enzyme, res subunit CVS41_09680 PF09335 SNARE associated Golgi protein CVS41_09685 PF02600 Disulfide bond formation protein DsbB CVS41_09690 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CVS41_09695 PF07840 FadR C-terminal domain CVS41_09695 PF00392 Bacterial regulatory proteins, gntR family CVS41_09705 PF07152 YaeQ protein CVS41_09750 PF01554 MatE CVS41_09755 PF06786 Uncharacterised protein family (UPF0253) CVS41_09765 PF00677 Lumazine binding domain CVS41_09775 PF13419 Haloacid dehalogenase-like hydrolase CVS41_09780 PF01370 NAD dependent epimerase/dehydratase family CVS41_09780 PF02222 ATP-grasp domain CVS41_09785 PF00892 EamA-like transporter family CVS41_09790 PF02525 Flavodoxin-like fold CVS41_09815 PF17783 CvfB-like winged helix domain CVS41_09815 PF13509 S1 domain CVS41_09825 PF04269 Protein of unknown function, DUF440 CVS41_09830 PF00912 Transglycosylase CVS41_09835 PF04269 Protein of unknown function, DUF440 CVS41_09840 PF03776 Septum formation topological specificity factor MinE CVS41_09845 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CVS41_09850 PF05209 Septum formation inhibitor MinC, N-terminal domain CVS41_09850 PF03775 Septum formation inhibitor MinC, C-terminal domain CVS41_09855 PF05166 YcgL domain CVS41_09860 PF03313 Serine dehydratase alpha chain CVS41_09860 PF03315 Serine dehydratase beta chain CVS41_09870 PF03315 Serine dehydratase beta chain CVS41_09870 PF03313 Serine dehydratase alpha chain CVS41_09875 PF06865 Pyrimidine/purine nucleoside phosphorylase CVS41_09880 PF00375 Sodium:dicarboxylate symporter family CVS41_09885 PF00365 Phosphofructokinase CVS41_09890 PF00121 Triosephosphate isomerase CVS41_09895 PF02698 DUF218 domain CVS41_09905 PF03882 MukF winged-helix domain CVS41_09905 PF17192 MukF middle domain CVS41_09905 PF17193 MukF C-terminal domain CVS41_09910 PF04288 MukE-like family CVS41_09915 PF16330 MukB hinge domain CVS41_09915 PF04310 MukB N-terminal CVS41_09920 PF03330 Lytic transglycolase CVS41_09920 PF05036 Sporulation related domain CVS41_09935 PF01327 Polypeptide deformylase CVS41_09970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS41_09970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS41_09975 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_09980 PF01546 Peptidase family M20/M25/M40 CVS41_09980 PF07687 Peptidase dimerisation domain CVS41_09985 PF01979 Amidohydrolase family CVS41_09990 PF00696 Amino acid kinase family CVS41_09995 PF07690 Major Facilitator Superfamily CVS41_10000 PF00005 ABC transporter CVS41_10005 PF01032 FecCD transport family CVS41_10015 PF00892 EamA-like transporter family CVS41_10020 PF01699 Sodium/calcium exchanger protein CVS41_10025 PF13478 XdhC Rossmann domain CVS41_10025 PF02625 XdhC and CoxI family CVS41_10035 PF12804 MobA-like NTP transferase domain CVS41_10040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_10040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS41_10045 PF01979 Amidohydrolase family CVS41_10050 PF00941 FAD binding domain in molybdopterin dehydrogenase CVS41_10055 PF01799 [2Fe-2S] binding domain CVS41_10055 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS41_10055 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CVS41_10060 PF00860 Permease family CVS41_10065 PF01979 Amidohydrolase family CVS41_10070 PF00860 Permease family CVS41_10075 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CVS41_10075 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS41_10080 PF03450 CO dehydrogenase flavoprotein C-terminal domain CVS41_10080 PF00941 FAD binding domain in molybdopterin dehydrogenase CVS41_10085 PF01799 [2Fe-2S] binding domain CVS41_10085 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_10090 PF05433 Glycine zipper 2TM domain CVS41_10105 PF00501 AMP-binding enzyme CVS41_10105 PF13193 AMP-binding enzyme C-terminal domain CVS41_10110 PF07694 5TMR of 5TMR-LYT CVS41_10110 PF00990 Diguanylate cyclase, GGDEF domain CVS41_10120 PF01502 Phosphoribosyl-AMP cyclohydrolase CVS41_10120 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CVS41_10125 PF00977 Histidine biosynthesis protein CVS41_10130 PF00977 Histidine biosynthesis protein CVS41_10135 PF00117 Glutamine amidotransferase class-I CVS41_10140 PF08645 Polynucleotide kinase 3 phosphatase CVS41_10140 PF00475 Imidazoleglycerol-phosphate dehydratase CVS41_10145 PF00155 Aminotransferase class I and II CVS41_10150 PF00815 Histidinol dehydrogenase CVS41_10155 PF01634 ATP phosphoribosyltransferase CVS41_10155 PF08029 HisG, C-terminal domain CVS41_10165 PF04851 Type III restriction enzyme, res subunit CVS41_10165 PF13307 Helicase C-terminal domain CVS41_10170 PF00814 Glycoprotease family CVS41_10180 PF12697 Alpha/beta hydrolase family CVS41_10185 PF13193 AMP-binding enzyme C-terminal domain CVS41_10185 PF00501 AMP-binding enzyme CVS41_10190 PF00570 HRDC domain CVS41_10190 PF01612 3'-5' exonuclease CVS41_10195 PF00753 Metallo-beta-lactamase superfamily CVS41_10205 PF02769 AIR synthase related protein, C-terminal domain CVS41_10205 PF00586 AIR synthase related protein, N-terminal domain CVS41_10220 PF17785 PUA-like domain CVS41_10220 PF10672 S-adenosylmethionine-dependent methyltransferase CVS41_10225 PF00669 Bacterial flagellin N-terminal helical region CVS41_10225 PF00700 Bacterial flagellin C-terminal helical region CVS41_10225 PF07196 Flagellin hook IN motif CVS41_10235 PF00672 HAMP domain CVS41_10235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_10235 PF12729 Four helix bundle sensory module for signal transduction CVS41_10240 PF00708 Acylphosphatase CVS41_10250 PF01588 Putative tRNA binding domain CVS41_10250 PF08264 Anticodon-binding domain of tRNA CVS41_10250 PF09334 tRNA synthetases class I (M) CVS41_10255 PF10609 NUBPL iron-transfer P-loop NTPase CVS41_10260 PF00485 Phosphoribulokinase / Uridine kinase family CVS41_10265 PF00692 dUTPase CVS41_10270 PF01384 Phosphate transporter family CVS41_10275 PF06945 Protein of unknown function (DUF1289) CVS41_10280 PF03562 MltA specific insert domain CVS41_10280 PF06725 3D domain CVS41_10285 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_10290 PF00268 Ribonucleotide reductase, small chain CVS41_10295 PF00317 Ribonucleotide reductase, all-alpha domain CVS41_10295 PF03477 ATP cone domain CVS41_10295 PF02867 Ribonucleotide reductase, barrel domain CVS41_10300 PF13419 Haloacid dehalogenase-like hydrolase CVS41_10310 PF00521 DNA gyrase/topoisomerase IV, subunit A CVS41_10310 PF03989 DNA gyrase C-terminal domain, beta-propeller CVS41_10315 PF00128 Alpha amylase, catalytic domain CVS41_10330 PF03129 Anticodon binding domain CVS41_10330 PF02824 TGS domain CVS41_10330 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVS41_10330 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS41_10335 PF05198 Translation initiation factor IF-3, N-terminal domain CVS41_10335 PF00707 Translation initiation factor IF-3, C-terminal domain CVS41_10340 PF01632 Ribosomal protein L35 CVS41_10345 PF00453 Ribosomal protein L20 CVS41_10350 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CVS41_10350 PF01409 tRNA synthetases class II core domain (F) CVS41_10355 PF01588 Putative tRNA binding domain CVS41_10355 PF03484 tRNA synthetase B5 domain CVS41_10355 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CVS41_10355 PF03483 B3/4 domain CVS41_10355 PF03147 Ferredoxin-fold anticodon binding domain CVS41_10360 PF00216 Bacterial DNA-binding protein CVS41_10365 PF00512 His Kinase A (phospho-acceptor) domain CVS41_10365 PF09456 RcsC Alpha-Beta-Loop (ABL) CVS41_10365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_10365 PF00072 Response regulator receiver domain CVS41_10380 PF02146 Sir2 family CVS41_10390 PF00563 EAL domain CVS41_10390 PF03707 Bacterial signalling protein N terminal repeat CVS41_10390 PF00990 Diguanylate cyclase, GGDEF domain CVS41_10395 PF00356 Bacterial regulatory proteins, lacI family CVS41_10400 PF00294 pfkB family carbohydrate kinase CVS41_10405 PF13407 Periplasmic binding protein domain CVS41_10410 PF02653 Branched-chain amino acid transport system / permease component CVS41_10415 PF00005 ABC transporter CVS41_10420 PF05025 RbsD / FucU transport protein family CVS41_10425 PF02798 Glutathione S-transferase, N-terminal domain CVS41_10425 PF00043 Glutathione S-transferase, C-terminal domain CVS41_10435 PF13416 Bacterial extracellular solute-binding protein CVS41_10440 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_10445 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_10450 PF08402 TOBE domain CVS41_10450 PF00005 ABC transporter CVS41_10465 PF01171 PP-loop family CVS41_10470 PF00582 Universal stress protein family CVS41_10475 PF13545 Crp-like helix-turn-helix domain CVS41_10475 PF00027 Cyclic nucleotide-binding domain CVS41_10490 PF00403 Heavy-metal-associated domain CVS41_10500 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CVS41_10500 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS41_10515 PF00115 Cytochrome C and Quinol oxidase polypeptide I CVS41_10525 PF13185 GAF domain CVS41_10530 PF17516 ProQ C-terminal domain CVS41_10530 PF04352 ProQ/FINO family CVS41_10535 PF03572 Peptidase family S41 CVS41_10535 PF17804 Tail specific protease N-terminal domain CVS41_10535 PF11818 C-terminal domain of tail specific protease (DUF3340) CVS41_10535 PF00595 PDZ domain CVS41_10540 PF11940 Domain of unknown function (DUF3458) Ig-like fold CVS41_10540 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CVS41_10540 PF01433 Peptidase family M1 domain CVS41_10550 PF05088 Bacterial NAD-glutamate dehydrogenase CVS41_10555 PF01180 Dihydroorotate dehydrogenase CVS41_10560 PF07126 Cell-division protein ZapC CVS41_10570 PF01197 Ribosomal protein L31 CVS41_10575 PF00444 Ribosomal protein L36 CVS41_10580 PF10672 S-adenosylmethionine-dependent methyltransferase CVS41_10580 PF02926 THUMP domain CVS41_10580 PF01170 Putative RNA methylase family UPF0020 CVS41_10595 PF04957 Ribosome modulation factor CVS41_10600 PF07977 FabA-like domain CVS41_10605 PF13654 AAA domain CVS41_10605 PF05362 Lon protease (S16) C-terminal proteolytic domain CVS41_10630 PF07130 YebG protein CVS41_10635 PF01674 Lipase (class 2) CVS41_10640 PF00106 short chain dehydrogenase CVS41_10665 PF03007 Wax ester synthase-like Acyl-CoA acyltransferase domain CVS41_10665 PF06974 Protein of unknown function (DUF1298) CVS41_10680 PF03972 MmgE/PrpD family CVS41_10685 PF00285 Citrate synthase, C-terminal domain CVS41_10700 PF04403 Paraquat-inducible protein A CVS41_10705 PF02470 MlaD protein CVS41_10710 PF13636 RNA-binding PUA-like domain of methyltransferase RsmF CVS41_10710 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF CVS41_10710 PF01189 16S rRNA methyltransferase RsmB/F CVS41_10720 PF00589 Phage integrase family CVS41_10725 PF01026 TatD related DNase CVS41_10730 PF09115 DNA polymerase III, delta subunit, C terminal CVS41_10735 PF02223 Thymidylate kinase CVS41_10740 PF02618 YceG-like family CVS41_10745 PF01063 Amino-transferase class IV CVS41_10750 PF02801 Beta-ketoacyl synthase, C-terminal domain CVS41_10750 PF00109 Beta-ketoacyl synthase, N-terminal domain CVS41_10755 PF00550 Phosphopantetheine attachment site CVS41_10765 PF00698 Acyl transferase domain CVS41_10770 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVS41_10770 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVS41_10775 PF02504 Fatty acid synthesis protein CVS41_10780 PF01783 Ribosomal L32p protein family CVS41_10785 PF02620 Large ribosomal RNA subunit accumulation protein YceD CVS41_10790 PF02545 Maf-like protein CVS41_10795 PF13419 Haloacid dehalogenase-like hydrolase CVS41_10800 PF00849 RNA pseudouridylate synthase CVS41_10800 PF01479 S4 domain CVS41_10805 PF00575 S1 RNA binding domain CVS41_10805 PF10150 Ribonuclease E/G family CVS41_10805 PF12111 Polyribonucleotide phosphorylase C terminal CVS41_10810 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_10810 PF02378 Phosphotransferase system, EIIC CVS41_10815 PF00294 pfkB family carbohydrate kinase CVS41_10820 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS41_10820 PF00381 PTS HPr component phosphorylation site CVS41_10825 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS41_10825 PF00356 Bacterial regulatory proteins, lacI family CVS41_10830 PF03222 Tryptophan/tyrosine permease family CVS41_10860 PF00270 DEAD/DEAH box helicase CVS41_10860 PF00271 Helicase conserved C-terminal domain CVS41_10870 PF01264 Chorismate synthase CVS41_10875 PF05175 Methyltransferase small domain CVS41_10880 PF01713 Smr domain CVS41_10885 PF00990 Diguanylate cyclase, GGDEF domain CVS41_10885 PF08448 PAS fold CVS41_10890 PF00300 Histidine phosphatase superfamily (branch 1) CVS41_10900 PF08329 Chitinase A, N-terminal domain CVS41_10900 PF00704 Glycosyl hydrolases family 18 CVS41_10910 PF03831 PhnA domain CVS41_10910 PF08274 PhnA Zinc-Ribbon CVS41_10975 PF00425 chorismate binding enzyme CVS41_10975 PF04715 Anthranilate synthase component I, N terminal region CVS41_10980 PF00293 NUDIX domain CVS41_10985 PF03222 Tryptophan/tyrosine permease family CVS41_10995 PF00375 Sodium:dicarboxylate symporter family CVS41_11000 PF00270 DEAD/DEAH box helicase CVS41_11000 PF00271 Helicase conserved C-terminal domain CVS41_11000 PF00570 HRDC domain CVS41_11000 PF16124 RecQ zinc-binding CVS41_11000 PF09382 RQC domain CVS41_11005 PF06798 PrkA serine protein kinase C-terminal domain CVS41_11005 PF08298 PrkA AAA domain CVS41_11010 PF04285 Protein of unknown function (DUF444) CVS41_11015 PF04293 SpoVR like protein CVS41_11020 PF00378 Enoyl-CoA hydratase/isomerase CVS41_11020 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CVS41_11020 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CVS41_11025 PF02803 Thiolase, C-terminal domain CVS41_11025 PF00108 Thiolase, N-terminal domain CVS41_11030 PF17863 AAA lid domain CVS41_11030 PF07726 ATPase family associated with various cellular activities (AAA) CVS41_11035 PF01882 Protein of unknown function DUF58 CVS41_11050 PF13519 von Willebrand factor type A domain CVS41_11060 PF08281 Sigma-70, region 4 CVS41_11060 PF04542 Sigma-70 region 2 CVS41_11070 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CVS41_11075 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CVS41_11080 PF00563 EAL domain CVS41_11080 PF08668 HDOD domain CVS41_11085 PF00108 Thiolase, N-terminal domain CVS41_11085 PF02803 Thiolase, C-terminal domain CVS41_11090 PF00376 MerR family regulatory protein CVS41_11090 PF09278 MerR, DNA binding CVS41_11095 PF01386 Ribosomal L25p family CVS41_11105 PF00270 DEAD/DEAH box helicase CVS41_11105 PF11898 Domain of unknown function (DUF3418) CVS41_11105 PF04408 Helicase associated domain (HA2) CVS41_11105 PF00271 Helicase conserved C-terminal domain CVS41_11105 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CVS41_11115 PF01966 HD domain CVS41_11120 PF00884 Sulfatase CVS41_11125 PF17863 AAA lid domain CVS41_11125 PF07726 ATPase family associated with various cellular activities (AAA) CVS41_11140 PF07584 Aerotolerance regulator N-terminal CVS41_11140 PF13519 von Willebrand factor type A domain CVS41_11145 PF07584 Aerotolerance regulator N-terminal CVS41_11145 PF13519 von Willebrand factor type A domain CVS41_11155 PF03466 LysR substrate binding domain CVS41_11155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11160 PF03781 Sulfatase-modifying factor enzyme 1 CVS41_11170 PF04055 Radical SAM superfamily CVS41_11170 PF13186 Iron-sulfur cluster-binding domain CVS41_11185 PF06480 FtsH Extracellular CVS41_11185 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_11185 PF01434 Peptidase family M41 CVS41_11185 PF17862 AAA+ lid domain CVS41_11195 PF00889 Elongation factor TS CVS41_11230 PF00929 Exonuclease CVS41_11230 PF08411 Exonuclease C-terminal CVS41_11245 PF03788 LrgA family CVS41_11250 PF04172 LrgB-like family CVS41_11255 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CVS41_11255 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVS41_11260 PF01212 Beta-eliminating lyase CVS41_11270 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CVS41_11275 PF01266 FAD dependent oxidoreductase CVS41_11280 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS41_11280 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS41_11285 PF02634 FdhD/NarQ family CVS41_11290 PF00158 Sigma-54 interaction domain CVS41_11290 PF01590 GAF domain CVS41_11290 PF02954 Bacterial regulatory protein, Fis family CVS41_11305 PF12800 4Fe-4S binding domain CVS41_11305 PF13247 4Fe-4S dicluster domain CVS41_11325 PF00583 Acetyltransferase (GNAT) family CVS41_11330 PF01609 Transposase DDE domain CVS41_11335 PF02705 K+ potassium transporter CVS41_11340 PF00037 4Fe-4S binding domain CVS41_11340 PF12798 4Fe-4S binding domain CVS41_11345 PF00361 Proton-conducting membrane transporter CVS41_11350 PF00146 NADH dehydrogenase CVS41_11355 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CVS41_11355 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CVS41_11355 PF00374 Nickel-dependent hydrogenase CVS41_11360 PF12838 4Fe-4S dicluster domain CVS41_11365 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS41_11370 PF07450 Formate hydrogenlyase maturation protein HycH CVS41_11375 PF01750 Hydrogenase maturation protease CVS41_11380 PF03841 L-seryl-tRNA selenium transferase CVS41_11380 PF12390 Selenocysteine synthase N terminal CVS41_11385 PF09107 Elongation factor SelB, winged helix CVS41_11385 PF09106 Elongation factor SelB, winged helix CVS41_11385 PF09105 Elongation factor SelB, winged helix CVS41_11385 PF03144 Elongation factor Tu domain 2 CVS41_11385 PF00009 Elongation factor Tu GTP binding domain CVS41_11390 PF17788 HypF Kae1-like domain CVS41_11390 PF01300 Telomere recombination CVS41_11390 PF07503 HypF finger CVS41_11390 PF00708 Acylphosphatase CVS41_11395 PF01455 HupF/HypC family CVS41_11400 PF01924 Hydrogenase formation hypA family CVS41_11405 PF00586 AIR synthase related protein, N-terminal domain CVS41_11405 PF02769 AIR synthase related protein, C-terminal domain CVS41_11410 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CVS41_11415 PF02492 CobW/HypB/UreG, nucleotide-binding domain CVS41_11420 PF00005 ABC transporter CVS41_11425 PF00005 ABC transporter CVS41_11430 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_11430 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_11435 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_11440 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_11445 PF11939 [NiFe]-hydrogenase assembly, chaperone, HybE CVS41_11450 PF01750 Hydrogenase maturation protease CVS41_11455 PF00374 Nickel-dependent hydrogenase CVS41_11460 PF03916 Polysulphide reductase, NrfD CVS41_11465 PF13247 4Fe-4S dicluster domain CVS41_11470 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CVS41_11470 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS41_11475 PF00360 Phytochrome region CVS41_11475 PF00990 Diguanylate cyclase, GGDEF domain CVS41_11475 PF01590 GAF domain CVS41_11475 PF00563 EAL domain CVS41_11480 PF00862 Sucrose synthase CVS41_11480 PF00534 Glycosyl transferases group 1 CVS41_11485 PF13439 Glycosyltransferase Family 4 CVS41_11485 PF00534 Glycosyl transferases group 1 CVS41_11550 PF00534 Glycosyl transferases group 1 CVS41_11550 PF13439 Glycosyltransferase Family 4 CVS41_11555 PF03552 Cellulose synthase CVS41_11555 PF00535 Glycosyl transferase family 2 CVS41_11555 PF07238 PilZ domain CVS41_11560 PF02397 Bacterial sugar transferase CVS41_11565 PF00534 Glycosyl transferases group 1 CVS41_11570 PF00072 Response regulator receiver domain CVS41_11570 PF00211 Adenylate and Guanylate cyclase catalytic domain CVS41_11600 PF00512 His Kinase A (phospho-acceptor) domain CVS41_11600 PF00072 Response regulator receiver domain CVS41_11600 PF09308 LuxQ, periplasmic CVS41_11600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_11615 PF01925 Sulfite exporter TauE/SafE CVS41_11620 PF13520 Amino acid permease CVS41_11630 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CVS41_11630 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CVS41_11635 PF00378 Enoyl-CoA hydratase/isomerase CVS41_11640 PF00378 Enoyl-CoA hydratase/isomerase CVS41_11645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS41_11645 PF02770 Acyl-CoA dehydrogenase, middle domain CVS41_11645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS41_11650 PF02770 Acyl-CoA dehydrogenase, middle domain CVS41_11650 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS41_11650 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS41_11655 PF01039 Carboxyl transferase domain CVS41_11660 PF00378 Enoyl-CoA hydratase/isomerase CVS41_11665 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS41_11665 PF00364 Biotin-requiring enzyme CVS41_11665 PF02785 Biotin carboxylase C-terminal domain CVS41_11665 PF00289 Biotin carboxylase, N-terminal domain CVS41_11670 PF00682 HMGL-like CVS41_11675 PF00376 MerR family regulatory protein CVS41_11675 PF09278 MerR, DNA binding CVS41_11690 PF01184 GPR1/FUN34/yaaH family CVS41_11700 PF00549 CoA-ligase CVS41_11700 PF02629 CoA binding domain CVS41_11705 PF00549 CoA-ligase CVS41_11705 PF08442 ATP-grasp domain CVS41_11710 PF02817 e3 binding domain CVS41_11710 PF00364 Biotin-requiring enzyme CVS41_11710 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS41_11715 PF16078 2-oxoglutarate dehydrogenase N-terminus CVS41_11715 PF00676 Dehydrogenase E1 component CVS41_11715 PF16870 2-oxoglutarate dehydrogenase C-terminal CVS41_11715 PF02779 Transketolase, pyrimidine binding domain CVS41_11720 PF13085 2Fe-2S iron-sulfur cluster binding domain CVS41_11725 PF00890 FAD binding domain CVS41_11725 PF02910 Fumarate reductase flavoprotein C-term CVS41_11730 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CVS41_11735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CVS41_11740 PF00285 Citrate synthase, C-terminal domain CVS41_11750 PF13673 Acetyltransferase (GNAT) domain CVS41_11765 PF00465 Iron-containing alcohol dehydrogenase CVS41_11770 PF08543 Phosphomethylpyrimidine kinase CVS41_11795 PF00005 ABC transporter CVS41_11795 PF00664 ABC transporter transmembrane region CVS41_11800 PF00664 ABC transporter transmembrane region CVS41_11800 PF00005 ABC transporter CVS41_11805 PF00672 HAMP domain CVS41_11805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_11805 PF00512 His Kinase A (phospho-acceptor) domain CVS41_11805 PF01627 Hpt domain CVS41_11805 PF00072 Response regulator receiver domain CVS41_11805 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) CVS41_11810 PF00085 Thioredoxin CVS41_11815 PF00939 Sodium:sulfate symporter transmembrane region CVS41_11820 PF00343 Carbohydrate phosphorylase CVS41_11835 PF03692 Putative zinc- or iron-chelating domain CVS41_11845 PF02901 Pyruvate formate lyase-like CVS41_11845 PF01228 Glycine radical CVS41_11850 PF01226 Formate/nitrite transporter CVS41_11855 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CVS41_11855 PF18381 YcaO cyclodehydratase C-terminal domain CVS41_11860 PF00232 Glycosyl hydrolase family 1 CVS41_11865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11865 PF03466 LysR substrate binding domain CVS41_11875 PF08267 Cobalamin-independent synthase, N-terminal domain CVS41_11875 PF01717 Cobalamin-independent synthase, Catalytic domain CVS41_11880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11880 PF03466 LysR substrate binding domain CVS41_11885 PF03466 LysR substrate binding domain CVS41_11885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11890 PF00857 Isochorismatase family CVS41_11895 PF02678 Pirin CVS41_11895 PF05726 Pirin C-terminal cupin domain CVS41_11900 PF07690 Major Facilitator Superfamily CVS41_11905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11905 PF03466 LysR substrate binding domain CVS41_11910 PF03466 LysR substrate binding domain CVS41_11910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_11915 PF13460 NAD(P)H-binding CVS41_11925 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS41_11930 PF00501 AMP-binding enzyme CVS41_11935 PF08891 YfcL protein CVS41_11945 PF03741 Integral membrane protein TerC family CVS41_11950 PF00691 OmpA family CVS41_11955 PF17152 Periplasmic sensor domain CVS41_11955 PF00990 Diguanylate cyclase, GGDEF domain CVS41_11965 PF18024 Helix-turn-helix domain CVS41_11965 PF00158 Sigma-54 interaction domain CVS41_11970 PF01329 Pterin 4 alpha carbinolamine dehydratase CVS41_11975 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CVS41_11980 PF00171 Aldehyde dehydrogenase family CVS41_11985 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_11990 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_11995 PF08402 TOBE domain CVS41_11995 PF00005 ABC transporter CVS41_12000 PF13416 Bacterial extracellular solute-binding protein CVS41_12005 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_12005 PF03466 LysR substrate binding domain CVS41_12010 PF05128 Domain of unknown function (DUF697) CVS41_12015 PF04317 YcjX-like family, DUF463 CVS41_12025 PF06667 Phage shock protein B CVS41_12030 PF04012 PspA/IM30 family CVS41_12035 PF00158 Sigma-54 interaction domain CVS41_12035 PF02954 Bacterial regulatory protein, Fis family CVS41_12040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_12045 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12050 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12050 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_12055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_12055 PF00005 ABC transporter CVS41_12060 PF00005 ABC transporter CVS41_12065 PF00183 Hsp90 protein CVS41_12065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_12070 PF02132 RecR protein CVS41_12070 PF13662 Toprim domain CVS41_12080 PF10722 Putative bacterial sensory transduction regulator CVS41_12090 PF00265 Thymidine kinase CVS41_12095 PF03553 Na+/H+ antiporter family CVS41_12100 PF00816 H-NS histone family CVS41_12105 PF01923 Cobalamin adenosyltransferase CVS41_12110 PF12843 Putative quorum-sensing-regulated virulence factor CVS41_12115 PF04055 Radical SAM superfamily CVS41_12120 PF06508 Queuosine biosynthesis protein QueC CVS41_12135 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CVS41_12140 PF18073 Rubredoxin metal binding domain CVS41_12150 PF00216 Bacterial DNA-binding protein CVS41_12155 PF00575 S1 RNA binding domain CVS41_12160 PF02224 Cytidylate kinase CVS41_12165 PF00925 GTP cyclohydrolase II CVS41_12170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_12170 PF03466 LysR substrate binding domain CVS41_12175 PF03466 LysR substrate binding domain CVS41_12175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_12180 PF07690 Major Facilitator Superfamily CVS41_12195 PF00881 Nitroreductase family CVS41_12200 PF03806 AbgT putative transporter family CVS41_12205 PF03707 Bacterial signalling protein N terminal repeat CVS41_12205 PF00990 Diguanylate cyclase, GGDEF domain CVS41_12205 PF13188 PAS domain CVS41_12205 PF00563 EAL domain CVS41_12210 PF03466 LysR substrate binding domain CVS41_12210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_12215 PF00072 Response regulator receiver domain CVS41_12225 PF01212 Beta-eliminating lyase CVS41_12230 PF00106 short chain dehydrogenase CVS41_12240 PF00248 Aldo/keto reductase family CVS41_12245 PF00076 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) CVS41_12255 PF00005 ABC transporter CVS41_12260 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12265 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_12270 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12275 PF03411 Penicillin-insensitive murein endopeptidase CVS41_12285 PF04536 TPM domain CVS41_12300 PF01618 MotA/TolQ/ExbB proton channel family CVS41_12305 PF13677 Membrane MotB of proton-channel complex MotA/MotB CVS41_12305 PF00691 OmpA family CVS41_12310 PF07715 TonB-dependent Receptor Plug Domain CVS41_12310 PF00593 TonB dependent receptor CVS41_12315 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CVS41_12315 PF00326 Prolyl oligopeptidase family CVS41_12335 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CVS41_12340 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS41_12345 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CVS41_12345 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CVS41_12355 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVS41_12355 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS41_12360 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS41_12360 PF00384 Molybdopterin oxidoreductase CVS41_12360 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS41_12365 PF00146 NADH dehydrogenase CVS41_12370 PF12838 4Fe-4S dicluster domain CVS41_12375 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CVS41_12380 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CVS41_12385 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CVS41_12385 PF00361 Proton-conducting membrane transporter CVS41_12390 PF00361 Proton-conducting membrane transporter CVS41_12395 PF00361 Proton-conducting membrane transporter CVS41_12405 PF00072 Response regulator receiver domain CVS41_12410 PF01966 HD domain CVS41_12415 PF02769 AIR synthase related protein, C-terminal domain CVS41_12415 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CVS41_12415 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal CVS41_12420 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_12420 PF01464 Transglycosylase SLT domain CVS41_12430 PF07191 zinc-ribbons CVS41_12435 PF01926 50S ribosome-binding GTPase CVS41_12435 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CVS41_12440 PF13360 PQQ-like domain CVS41_12445 PF09976 Tetratricopeptide repeat-like domain CVS41_12450 PF13393 Histidyl-tRNA synthetase CVS41_12450 PF03129 Anticodon binding domain CVS41_12460 PF13464 Domain of unknown function (DUF4115) CVS41_12470 PF04055 Radical SAM superfamily CVS41_12475 PF00334 Nucleoside diphosphate kinase CVS41_12480 PF12404 Peptidase CVS41_12480 PF00883 Cytosol aminopeptidase family, catalytic domain CVS41_12485 PF00883 Cytosol aminopeptidase family, catalytic domain CVS41_12485 PF12404 Peptidase CVS41_12490 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_12495 PF00012 Hsp70 protein CVS41_12500 PF00226 DnaJ domain CVS41_12500 PF07743 HSCB C-terminal oligomerisation domain CVS41_12505 PF01521 Iron-sulphur cluster biosynthesis CVS41_12510 PF01592 NifU-like N terminal domain CVS41_12515 PF00266 Aminotransferase class-V CVS41_12520 PF02082 Transcriptional regulator CVS41_12525 PF00588 SpoU rRNA Methylase family CVS41_12550 PF13181 Tetratricopeptide repeat CVS41_12550 PF07719 Tetratricopeptide repeat CVS41_12560 PF07549 SecD/SecF GG Motif CVS41_12560 PF02355 Protein export membrane protein CVS41_12565 PF07549 SecD/SecF GG Motif CVS41_12565 PF13721 SecD export protein N-terminal TM region CVS41_12565 PF02355 Protein export membrane protein CVS41_12570 PF02699 Preprotein translocase subunit CVS41_12575 PF01702 Queuine tRNA-ribosyltransferase CVS41_12580 PF02547 Queuosine biosynthesis protein CVS41_12585 PF00571 CBS domain CVS41_12590 PF00578 AhpC/TSA family CVS41_12590 PF10417 C-terminal domain of 1-Cys peroxiredoxin CVS41_12595 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_12595 PF13192 Thioredoxin domain CVS41_12640 PF00005 ABC transporter CVS41_12640 PF00664 ABC transporter transmembrane region CVS41_12640 PF03412 Peptidase C39 family CVS41_12645 PF16199 Radical_SAM C-terminal domain CVS41_12645 PF04055 Radical SAM superfamily CVS41_12650 PF00310 Glutamine amidotransferases class-II CVS41_12650 PF04898 Glutamate synthase central domain CVS41_12650 PF01645 Conserved region in glutamate synthase CVS41_12650 PF01493 GXGXG motif CVS41_12655 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS41_12655 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_12670 PF00270 DEAD/DEAH box helicase CVS41_12670 PF00271 Helicase conserved C-terminal domain CVS41_12685 PF02421 Ferrous iron transport protein B CVS41_12685 PF07664 Ferrous iron transport protein B C terminus CVS41_12685 PF07670 Nucleoside recognition CVS41_12695 PF01253 Translation initiation factor SUI1 CVS41_12700 PF01169 Uncharacterized protein family UPF0016 CVS41_12745 PF01406 tRNA synthetases class I (C) catalytic domain CVS41_12745 PF09190 DALR domain CVS41_12750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CVS41_12760 PF00149 Calcineurin-like phosphoesterase CVS41_12770 PF04226 Transglycosylase associated protein CVS41_12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_12775 PF08521 Two-component sensor kinase N-terminal CVS41_12775 PF00512 His Kinase A (phospho-acceptor) domain CVS41_12780 PF00072 Response regulator receiver domain CVS41_12780 PF00486 Transcriptional regulatory protein, C terminal CVS41_12795 PF01970 Tripartite tricarboxylate transporter TctA family CVS41_12800 PF14497 Glutathione S-transferase, C-terminal domain CVS41_12800 PF02798 Glutathione S-transferase, N-terminal domain CVS41_12810 PF04209 homogentisate 1,2-dioxygenase CVS41_12815 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS41_12825 PF00849 RNA pseudouridylate synthase CVS41_12830 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12835 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12840 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_12845 PF00005 ABC transporter CVS41_12850 PF03956 Lysine exporter LysO CVS41_12855 PF01979 Amidohydrolase family CVS41_12860 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_12865 PF04336 Acyl carrier protein phosphodiesterase CVS41_12875 PF03960 ArsC family CVS41_12880 PF00578 AhpC/TSA family CVS41_12885 PF01435 Peptidase family M48 CVS41_12885 PF13181 Tetratricopeptide repeat CVS41_12895 PF01594 AI-2E family transporter CVS41_12905 PF00561 alpha/beta hydrolase fold CVS41_12910 PF03976 Polyphosphate kinase 2 (PPK2) CVS41_12915 PF08402 TOBE domain CVS41_12915 PF00005 ABC transporter CVS41_12920 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12925 PF14785 Maltose transport system permease protein MalF P2 domain CVS41_12925 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_12930 PF01547 Bacterial extracellular solute-binding protein CVS41_12935 PF04245 37-kD nucleoid-associated bacterial protein CVS41_12940 PF07208 Protein of unknown function (DUF1414) CVS41_12945 PF00884 Sulfatase CVS41_12945 PF11893 Domain of unknown function (DUF3413) CVS41_12950 PF03180 NLPA lipoprotein CVS41_12955 PF00082 Subtilase family CVS41_12955 PF01483 Proprotein convertase P-domain CVS41_12965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CVS41_12965 PF02896 PEP-utilising enzyme, TIM barrel domain CVS41_12965 PF00391 PEP-utilising enzyme, mobile domain CVS41_12970 PF03618 Kinase/pyrophosphorylase CVS41_12980 PF00324 Amino acid permease CVS41_12995 PF08447 PAS fold CVS41_12995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_13000 PF02347 Glycine cleavage system P-protein CVS41_13005 PF01597 Glycine cleavage H-protein CVS41_13010 PF08669 Glycine cleavage T-protein C-terminal barrel domain CVS41_13010 PF01571 Aminomethyltransferase folate-binding domain CVS41_13015 PF01494 FAD binding domain CVS41_13020 PF01494 FAD binding domain CVS41_13025 PF03695 Uncharacterised protein family (UPF0149) CVS41_13030 PF05164 Cell division protein ZapA CVS41_13040 PF07690 Major Facilitator Superfamily CVS41_13045 PF02798 Glutathione S-transferase, N-terminal domain CVS41_13045 PF00043 Glutathione S-transferase, C-terminal domain CVS41_13055 PF00459 Inositol monophosphatase family CVS41_13060 PF00672 HAMP domain CVS41_13060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_13070 PF18393 MotY N-terminal domain CVS41_13070 PF00691 OmpA family CVS41_13095 PF13609 Gram-negative porin CVS41_13100 PF06733 DEAD_2 CVS41_13100 PF13307 Helicase C-terminal domain CVS41_13110 PF00850 Histone deacetylase domain CVS41_13115 PF01926 50S ribosome-binding GTPase CVS41_13120 PF00245 Alkaline phosphatase CVS41_13125 PF00245 Alkaline phosphatase CVS41_13140 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS41_13140 PF14760 Rnk N-terminus CVS41_13145 PF00072 Response regulator receiver domain CVS41_13145 PF00196 Bacterial regulatory proteins, luxR family CVS41_13150 PF07730 Histidine kinase CVS41_13150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_13150 PF05231 MASE1 CVS41_13155 PF07690 Major Facilitator Superfamily CVS41_13160 PF08448 PAS fold CVS41_13160 PF00990 Diguanylate cyclase, GGDEF domain CVS41_13165 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_13170 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_13175 PF00005 ABC transporter CVS41_13185 PF04116 Fatty acid hydroxylase superfamily CVS41_13190 PF13520 Amino acid permease CVS41_13195 PF00809 Pterin binding enzyme CVS41_13195 PF02574 Homocysteine S-methyltransferase CVS41_13195 PF02607 B12 binding domain CVS41_13195 PF02310 B12 binding domain CVS41_13195 PF02965 Vitamin B12 dependent methionine synthase, activation domain CVS41_13205 PF00571 CBS domain CVS41_13205 PF01595 Cyclin M transmembrane N-terminal domain CVS41_13205 PF03471 Transporter associated domain CVS41_13210 PF01895 PhoU domain CVS41_13220 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_13225 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_13230 PF14437 MafB19-like deaminase CVS41_13240 PF01274 Malate synthase CVS41_13245 PF00463 Isocitrate lyase family CVS41_13250 PF00308 Bacterial dnaA protein CVS41_13265 PF02769 AIR synthase related protein, C-terminal domain CVS41_13265 PF00586 AIR synthase related protein, N-terminal domain CVS41_13270 PF00551 Formyl transferase CVS41_13275 PF01784 NIF3 (NGG1p interacting factor 3) CVS41_13280 PF02954 Bacterial regulatory protein, Fis family CVS41_13280 PF00158 Sigma-54 interaction domain CVS41_13285 PF00512 His Kinase A (phospho-acceptor) domain CVS41_13285 PF00989 PAS fold CVS41_13285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_13290 PF02954 Bacterial regulatory protein, Fis family CVS41_13290 PF00072 Response regulator receiver domain CVS41_13290 PF00158 Sigma-54 interaction domain CVS41_13300 PF01842 ACT domain CVS41_13305 PF02503 Polyphosphate kinase middle domain CVS41_13305 PF13090 Polyphosphate kinase C-terminal domain 2 CVS41_13305 PF17941 Polyphosphate kinase C-terminal domain 1 CVS41_13305 PF13089 Polyphosphate kinase N-terminal domain CVS41_13310 PF02541 Ppx/GppA phosphatase family CVS41_13315 PF03448 MgtE intracellular N domain CVS41_13315 PF01769 Divalent cation transporter CVS41_13315 PF00571 CBS domain CVS41_13320 PF00669 Bacterial flagellin N-terminal helical region CVS41_13325 PF07196 Flagellin hook IN motif CVS41_13325 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS41_13330 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CVS41_13330 PF10135 Rod binding protein CVS41_13335 PF02119 Flagellar P-ring protein CVS41_13340 PF02107 Flagellar L-ring protein CVS41_13345 PF00460 Flagella basal body rod protein CVS41_13345 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS41_13350 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS41_13350 PF00460 Flagella basal body rod protein CVS41_13355 PF07559 Flagellar basal body protein FlaE CVS41_13355 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS41_13355 PF00460 Flagella basal body rod protein CVS41_13360 PF03963 Flagellar hook capping protein - N-terminal region CVS41_13360 PF13860 FlgD Ig-like domain CVS41_13360 PF13861 FlgD Tudor-like domain CVS41_13365 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS41_13365 PF00460 Flagella basal body rod protein CVS41_13370 PF00460 Flagella basal body rod protein CVS41_13375 PF03705 CheR methyltransferase, all-alpha domain CVS41_13375 PF01739 CheR methyltransferase, SAM binding domain CVS41_13380 PF01584 CheW-like domain CVS41_13380 PF00072 Response regulator receiver domain CVS41_13385 PF13144 Chaperone for flagella basal body P-ring formation CVS41_13400 PF12850 Calcineurin-like phosphoesterase superfamily domain CVS41_13405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_13415 PF01479 S4 domain CVS41_13415 PF00849 RNA pseudouridylate synthase CVS41_13420 PF01966 HD domain CVS41_13430 PF00923 Transaldolase/Fructose-6-phosphate aldolase CVS41_13435 PF04055 Radical SAM superfamily CVS41_13445 PF08220 DeoR-like helix-turn-helix domain CVS41_13445 PF00455 DeoR C terminal sensor domain CVS41_13450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_13475 PF00313 'Cold-shock' DNA-binding domain CVS41_13480 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS41_13480 PF00364 Biotin-requiring enzyme CVS41_13480 PF02817 e3 binding domain CVS41_13485 PF02780 Transketolase, C-terminal domain CVS41_13485 PF02779 Transketolase, pyrimidine binding domain CVS41_13490 PF00676 Dehydrogenase E1 component CVS41_13500 PF00975 Thioesterase domain CVS41_13500 PF00550 Phosphopantetheine attachment site CVS41_13500 PF00668 Condensation domain CVS41_13500 PF00501 AMP-binding enzyme CVS41_13510 PF00857 Isochorismatase family CVS41_13510 PF00550 Phosphopantetheine attachment site CVS41_13515 PF13193 AMP-binding enzyme C-terminal domain CVS41_13515 PF00501 AMP-binding enzyme CVS41_13520 PF00425 chorismate binding enzyme CVS41_13525 PF07715 TonB-dependent Receptor Plug Domain CVS41_13525 PF00593 TonB dependent receptor CVS41_13530 PF00793 DAHP synthetase I family CVS41_13535 PF00356 Bacterial regulatory proteins, lacI family CVS41_13540 PF14718 Soluble lytic murein transglycosylase L domain CVS41_13540 PF01464 Transglycosylase SLT domain CVS41_13545 PF00563 EAL domain CVS41_13545 PF03707 Bacterial signalling protein N terminal repeat CVS41_13545 PF00990 Diguanylate cyclase, GGDEF domain CVS41_13550 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CVS41_13570 PF04357 TamB, inner membrane protein subunit of TAM complex CVS41_13575 PF17243 POTRA domain TamA domain 1 CVS41_13575 PF07244 Surface antigen variable number repeat CVS41_13575 PF01103 Surface antigen CVS41_13595 PF02627 Carboxymuconolactone decarboxylase family CVS41_13600 PF00403 Heavy-metal-associated domain CVS41_13600 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS41_13600 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_13605 PF13416 Bacterial extracellular solute-binding protein CVS41_13615 PF00005 ABC transporter CVS41_13620 PF01066 CDP-alcohol phosphatidyltransferase CVS41_13625 PF13406 Transglycosylase SLT domain CVS41_13630 PF01047 MarR family CVS41_13640 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVS41_13640 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVS41_13640 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVS41_13640 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVS41_13645 PF03925 SeqA protein C-terminal domain CVS41_13645 PF17206 SeqA protein N-terminal domain CVS41_13650 PF12697 Alpha/beta hydrolase family CVS41_13660 PF01402 Ribbon-helix-helix protein, copG family CVS41_13665 PF00258 Flavodoxin CVS41_13675 PF01475 Ferric uptake regulator family CVS41_13680 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS41_13680 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CVS41_13685 PF02838 Glycosyl hydrolase family 20, domain 2 CVS41_13685 PF03173 Putative carbohydrate binding domain CVS41_13685 PF00728 Glycosyl hydrolase family 20, catalytic domain CVS41_13685 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CVS41_13690 PF02378 Phosphotransferase system, EIIC CVS41_13690 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CVS41_13690 PF00367 phosphotransferase system, EIIB CVS41_13695 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CVS41_13700 PF01979 Amidohydrolase family CVS41_13705 PF00480 ROK family CVS41_13705 PF01047 MarR family CVS41_13710 PF00884 Sulfatase CVS41_13710 PF08019 Phosphoethanolamine transferase EptA/EptB CVS41_13715 PF01966 HD domain CVS41_13720 PF07694 5TMR of 5TMR-LYT CVS41_13720 PF06580 Histidine kinase CVS41_13725 PF04397 LytTr DNA-binding domain CVS41_13725 PF00072 Response regulator receiver domain CVS41_13730 PF02554 Carbon starvation protein CstA CVS41_13735 PF11742 Protein of unknown function (DUF3302) CVS41_13740 PF00529 HlyD membrane-fusion protein of T1SS CVS41_13740 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_13745 PF00271 Helicase conserved C-terminal domain CVS41_13745 PF04851 Type III restriction enzyme, res subunit CVS41_13750 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CVS41_13755 PF00462 Glutaredoxin CVS41_13760 PF03372 Endonuclease/Exonuclease/phosphatase family CVS41_13770 PF03061 Thioesterase superfamily CVS41_13775 PF01370 NAD dependent epimerase/dehydratase family CVS41_13780 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS41_13780 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CVS41_13780 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CVS41_13780 PF10371 Domain of unknown function CVS41_13780 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CVS41_13785 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS41_13785 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_13785 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS41_13795 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_13795 PF03476 MOSC N-terminal beta barrel domain CVS41_13795 PF03476 MOSC N-terminal beta barrel domain CVS41_13795 PF03473 MOSC domain CVS41_13795 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_13795 PF03473 MOSC domain CVS41_13805 PF01435 Peptidase family M48 CVS41_13815 PF12697 Alpha/beta hydrolase family CVS41_13815 PF08241 Methyltransferase domain CVS41_13820 PF00155 Aminotransferase class I and II CVS41_13825 PF06968 Biotin and Thiamin Synthesis associated domain CVS41_13825 PF04055 Radical SAM superfamily CVS41_13830 PF00202 Aminotransferase class-III CVS41_13845 PF01336 OB-fold nucleic acid binding domain CVS41_13845 PF00152 tRNA synthetases class II (D, K and N) CVS41_13855 PF03605 Anaerobic c4-dicarboxylate membrane transporter CVS41_13865 PF01546 Peptidase family M20/M25/M40 CVS41_13865 PF07687 Peptidase dimerisation domain CVS41_13870 PF03606 C4-dicarboxylate anaerobic carrier CVS41_13880 PF03960 ArsC family CVS41_13885 PF07687 Peptidase dimerisation domain CVS41_13885 PF01546 Peptidase family M20/M25/M40 CVS41_13890 PF02557 D-alanyl-D-alanine carboxypeptidase CVS41_13900 PF00999 Sodium/hydrogen exchanger family CVS41_13900 PF02080 TrkA-C domain CVS41_13900 PF03471 Transporter associated domain CVS41_13910 PF02080 TrkA-C domain CVS41_13910 PF00999 Sodium/hydrogen exchanger family CVS41_13910 PF03471 Transporter associated domain CVS41_13915 PF01810 LysE type translocator CVS41_13920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_13920 PF00672 HAMP domain CVS41_13920 PF12729 Four helix bundle sensory module for signal transduction CVS41_13925 PF07509 Protein of unknown function (DUF1523) CVS41_13945 PF01156 Inosine-uridine preferring nucleoside hydrolase CVS41_13950 PF00849 RNA pseudouridylate synthase CVS41_13955 PF01048 Phosphorylase superfamily CVS41_13960 PF00465 Iron-containing alcohol dehydrogenase CVS41_13965 PF04355 SmpA / OmlA family CVS41_13970 PF13460 NAD(P)H-binding CVS41_13980 PF10437 Bacterial lipoate protein ligase C-terminus CVS41_13980 PF03099 Biotin/lipoate A/B protein ligase family CVS41_13985 PF00563 EAL domain CVS41_13985 PF00990 Diguanylate cyclase, GGDEF domain CVS41_13985 PF03707 Bacterial signalling protein N terminal repeat CVS41_13990 PF02687 FtsX-like permease family CVS41_13990 PF12704 MacB-like periplasmic core domain CVS41_13990 PF00005 ABC transporter CVS41_13995 PF02687 FtsX-like permease family CVS41_13995 PF12704 MacB-like periplasmic core domain CVS41_13995 PF00005 ABC transporter CVS41_14000 PF02687 FtsX-like permease family CVS41_14000 PF00005 ABC transporter CVS41_14000 PF12704 MacB-like periplasmic core domain CVS41_14005 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_14005 PF00529 HlyD membrane-fusion protein of T1SS CVS41_14010 PF00873 AcrB/AcrD/AcrF family CVS41_14025 PF04143 Sulphur transport CVS41_14040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_14050 PF02308 MgtC family CVS41_14055 PF00356 Bacterial regulatory proteins, lacI family CVS41_14055 PF13407 Periplasmic binding protein domain CVS41_14060 PF00251 Glycosyl hydrolases family 32 N-terminal domain CVS41_14060 PF08244 Glycosyl hydrolases family 32 C terminal CVS41_14065 PF00367 phosphotransferase system, EIIB CVS41_14065 PF02378 Phosphotransferase system, EIIC CVS41_14070 PF00294 pfkB family carbohydrate kinase CVS41_14075 PF11471 Maltoporin periplasmic N-terminal extension CVS41_14075 PF02264 LamB porin CVS41_14080 PF00684 DnaJ central domain CVS41_14080 PF01556 DnaJ C terminal domain CVS41_14080 PF00226 DnaJ domain CVS41_14085 PF00012 Hsp70 protein CVS41_14090 PF01025 GrpE CVS41_14095 PF01513 ATP-NAD kinase CVS41_14100 PF02463 RecF/RecN/SMC N terminal domain CVS41_14110 PF01368 DHH family CVS41_14110 PF02833 DHHA2 domain CVS41_14115 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_14120 PF02687 FtsX-like permease family CVS41_14120 PF12704 MacB-like periplasmic core domain CVS41_14120 PF00005 ABC transporter CVS41_14125 PF02321 Outer membrane efflux protein CVS41_14130 PF00816 H-NS histone family CVS41_14140 PF06082 Exopolysaccharide biosynthesis protein YbjH CVS41_14160 PF13614 AAA domain CVS41_14160 PF13807 G-rich domain on putative tyrosine kinase CVS41_14160 PF02706 Chain length determinant protein CVS41_14165 PF01451 Low molecular weight phosphotyrosine protein phosphatase CVS41_14170 PF10531 SLBB domain CVS41_14170 PF18412 Outer-membrane lipoprotein Wza C-terminal domain CVS41_14170 PF02563 Polysaccharide biosynthesis/export protein CVS41_14180 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CVS41_14180 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CVS41_14180 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CVS41_14185 PF01370 NAD dependent epimerase/dehydratase family CVS41_14190 PF00534 Glycosyl transferases group 1 CVS41_14200 PF13439 Glycosyltransferase Family 4 CVS41_14200 PF00534 Glycosyl transferases group 1 CVS41_14205 PF00534 Glycosyl transferases group 1 CVS41_14205 PF13439 Glycosyltransferase Family 4 CVS41_14220 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_14225 PF01943 Polysaccharide biosynthesis protein CVS41_14230 PF00953 Glycosyl transferase family 4 CVS41_14235 PF02719 Polysaccharide biosynthesis protein CVS41_14240 PF00953 Glycosyl transferase family 4 CVS41_14245 PF01370 NAD dependent epimerase/dehydratase family CVS41_14260 PF02350 UDP-N-acetylglucosamine 2-epimerase CVS41_14270 PF00005 ABC transporter CVS41_14280 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CVS41_14285 PF00483 Nucleotidyl transferase CVS41_14295 PF04321 RmlD substrate binding domain CVS41_14300 PF16363 GDP-mannose 4,6 dehydratase CVS41_14305 PF00873 AcrB/AcrD/AcrF family CVS41_14310 PF00529 HlyD membrane-fusion protein of T1SS CVS41_14310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_14315 PF00440 Bacterial regulatory proteins, tetR family CVS41_14315 PF08361 MAATS-type transcriptional repressor, C-terminal region CVS41_14330 PF02001 Protein of unknown function DUF134 CVS41_14345 PF00072 Response regulator receiver domain CVS41_14350 PF00919 Uncharacterized protein family UPF0004 CVS41_14350 PF18693 TRAM domain CVS41_14350 PF04055 Radical SAM superfamily CVS41_14370 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_14370 PF14821 Threonine synthase N terminus CVS41_14375 PF08544 GHMP kinases C terminal CVS41_14375 PF00288 GHMP kinases N terminal domain CVS41_14380 PF00696 Amino acid kinase family CVS41_14380 PF01842 ACT domain CVS41_14380 PF00742 Homoserine dehydrogenase CVS41_14380 PF03447 Homoserine dehydrogenase, NAD binding domain CVS41_14380 PF13840 ACT domain CVS41_14385 PF00588 SpoU rRNA Methylase family CVS41_14390 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CVS41_14400 PF01479 S4 domain CVS41_14400 PF00849 RNA pseudouridylate synthase CVS41_14405 PF04079 Segregation and condensation complex subunit ScpB CVS41_14410 PF02616 Segregation and condensation protein ScpA CVS41_14415 PF01300 Telomere recombination CVS41_14420 PF02811 PHP domain CVS41_14425 PF04715 Anthranilate synthase component I, N terminal region CVS41_14425 PF00425 chorismate binding enzyme CVS41_14430 PF00591 Glycosyl transferase family, a/b domain CVS41_14430 PF00117 Glutamine amidotransferase class-I CVS41_14430 PF02885 Glycosyl transferase family, helical bundle domain CVS41_14435 PF02885 Glycosyl transferase family, helical bundle domain CVS41_14435 PF00591 Glycosyl transferase family, a/b domain CVS41_14440 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CVS41_14440 PF00218 Indole-3-glycerol phosphate synthase CVS41_14445 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_14450 PF00290 Tryptophan synthase alpha chain CVS41_14465 PF04307 LexA-binding, inner membrane-associated putative hydrolase CVS41_14485 PF07670 Nucleoside recognition CVS41_14485 PF01773 Na+ dependent nucleoside transporter N-terminus CVS41_14485 PF07662 Na+ dependent nucleoside transporter C-terminus CVS41_14490 PF03960 ArsC family CVS41_14495 PF01758 Sodium Bile acid symporter family CVS41_14500 PF02374 Anion-transporting ATPase CVS41_14505 PF06953 Arsenical resistance operon trans-acting repressor ArsD CVS41_14510 PF01022 Bacterial regulatory protein, arsR family CVS41_14525 PF03737 Aldolase/RraA CVS41_14535 PF00486 Transcriptional regulatory protein, C terminal CVS41_14535 PF00072 Response regulator receiver domain CVS41_14550 PF00664 ABC transporter transmembrane region CVS41_14550 PF00005 ABC transporter CVS41_14555 PF00664 ABC transporter transmembrane region CVS41_14555 PF00005 ABC transporter CVS41_14575 PF01980 tRNA-methyltransferase O CVS41_14575 PF18389 TrmO C-terminal domain CVS41_14580 PF01292 Prokaryotic cytochrome b561 CVS41_14590 PF00072 Response regulator receiver domain CVS41_14590 PF00486 Transcriptional regulatory protein, C terminal CVS41_14595 PF08918 PhoQ Sensor CVS41_14595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_14600 PF03350 Uncharacterized protein family, UPF0114 CVS41_14615 PF01266 FAD dependent oxidoreductase CVS41_14620 PF07883 Cupin domain CVS41_14620 PF01381 Helix-turn-helix CVS41_14625 PF00171 Aldehyde dehydrogenase family CVS41_14630 PF00202 Aminotransferase class-III CVS41_14635 PF00324 Amino acid permease CVS41_14645 PF00324 Amino acid permease CVS41_14650 PF02690 Na+/Pi-cotransporter CVS41_14655 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_14655 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS41_14665 PF04381 Putative exonuclease, RdgC CVS41_14675 PF00149 Calcineurin-like phosphoesterase CVS41_14675 PF12320 Type 5 capsule protein repressor C-terminal domain CVS41_14680 PF13476 AAA domain CVS41_14695 PF02887 Pyruvate kinase, alpha/beta domain CVS41_14695 PF00224 Pyruvate kinase, barrel domain CVS41_14700 PF00924 Mechanosensitive ion channel CVS41_14700 PF12795 Mechanosensitive ion channel porin domain CVS41_14700 PF12794 Mechanosensitive ion channel inner membrane domain 1 CVS41_14710 PF05649 Peptidase family M13 CVS41_14710 PF01431 Peptidase family M13 CVS41_14715 PF08448 PAS fold CVS41_14715 PF00990 Diguanylate cyclase, GGDEF domain CVS41_14720 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CVS41_14725 PF00391 PEP-utilising enzyme, mobile domain CVS41_14725 PF05524 PEP-utilising enzyme, N-terminal CVS41_14725 PF02896 PEP-utilising enzyme, TIM barrel domain CVS41_14730 PF00381 PTS HPr component phosphorylation site CVS41_14735 PF00291 Pyridoxal-phosphate dependent enzyme CVS41_14740 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_14740 PF17862 AAA+ lid domain CVS41_14740 PF01434 Peptidase family M41 CVS41_14750 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVS41_14750 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVS41_14755 PF00672 HAMP domain CVS41_14755 PF01966 HD domain CVS41_14760 PF13401 AAA domain CVS41_14760 PF01471 Putative peptidoglycan binding domain CVS41_14765 PF16537 Type II secretion system protein B CVS41_14770 PF11356 Type II secretion system protein C CVS41_14775 PF00263 Bacterial type II and III secretion system protein CVS41_14775 PF03958 Bacterial type II/III secretion system short domain CVS41_14780 PF00437 Type II/IV secretion system protein CVS41_14785 PF00482 Type II secretion system (T2SS), protein F CVS41_14790 PF07963 Prokaryotic N-terminal methylation motif CVS41_14790 PF08334 Type II secretion system (T2SS), protein G CVS41_14795 PF12019 Type II transport protein GspH CVS41_14795 PF07963 Prokaryotic N-terminal methylation motif CVS41_14800 PF02501 Type II secretion system (T2SS), protein I CVS41_14800 PF07963 Prokaryotic N-terminal methylation motif CVS41_14805 PF11612 Type II secretion system (T2SS), protein J CVS41_14805 PF07963 Prokaryotic N-terminal methylation motif CVS41_14810 PF03934 Type II secretion system (T2SS), protein K CVS41_14815 PF12693 GspL periplasmic domain CVS41_14815 PF05134 Type II secretion system (T2SS), protein L CVS41_14820 PF04612 Type II secretion system (T2SS), protein M CVS41_14825 PF01203 Type II secretion system (T2SS), protein N CVS41_14835 PF01027 Inhibitor of apoptosis-promoting Bax1 CVS41_14840 PF12805 FUSC-like inner membrane protein yccS CVS41_14845 PF04358 DsrC like protein CVS41_14850 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CVS41_14855 PF03466 LysR substrate binding domain CVS41_14855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_14895 PF11842 Domain of unknown function (DUF3362) CVS41_14895 PF04055 Radical SAM superfamily CVS41_14895 PF08497 Radical SAM N-terminal CVS41_14900 PF00873 AcrB/AcrD/AcrF family CVS41_14905 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_14905 PF00529 HlyD membrane-fusion protein of T1SS CVS41_14910 PF00990 Diguanylate cyclase, GGDEF domain CVS41_14910 PF17158 Membrane-associated sensor, integral membrane domain CVS41_14915 PF01734 Patatin-like phospholipase CVS41_14920 PF13520 Amino acid permease CVS41_14935 PF01389 OmpA-like transmembrane domain CVS41_14935 PF00691 OmpA family CVS41_14945 PF01389 OmpA-like transmembrane domain CVS41_14945 PF00691 OmpA family CVS41_14950 PF01389 OmpA-like transmembrane domain CVS41_14950 PF00691 OmpA family CVS41_14955 PF00390 Malic enzyme, N-terminal domain CVS41_14955 PF03949 Malic enzyme, NAD binding domain CVS41_14960 PF12833 Helix-turn-helix domain CVS41_14965 PF01554 MatE CVS41_14970 PF10692 Protein of unknown function (DUF2498) CVS41_14975 PF00990 Diguanylate cyclase, GGDEF domain CVS41_14980 PF00860 Permease family CVS41_14990 PF01235 Sodium:alanine symporter family CVS41_14995 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS41_14995 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CVS41_15000 PF01699 Sodium/calcium exchanger protein CVS41_15005 PF00462 Glutaredoxin CVS41_15005 PF08534 Redoxin CVS41_15015 PF00293 NUDIX domain CVS41_15030 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_15030 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS41_15035 PF03932 CutC family CVS41_15040 PF00480 ROK family CVS41_15050 PF01435 Peptidase family M48 CVS41_15055 PF12849 PBP superfamily domain CVS41_15060 PF00512 His Kinase A (phospho-acceptor) domain CVS41_15060 PF00989 PAS fold CVS41_15060 PF11808 Phosphate regulon sensor protein PhoR CVS41_15060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_15065 PF00486 Transcriptional regulatory protein, C terminal CVS41_15065 PF00072 Response regulator receiver domain CVS41_15070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS41_15085 PF00892 EamA-like transporter family CVS41_15090 PF00072 Response regulator receiver domain CVS41_15090 PF12431 Transcriptional regulator CVS41_15095 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CVS41_15095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_15095 PF00989 PAS fold CVS41_15095 PF17203 Single cache domain 3 CVS41_15100 PF00390 Malic enzyme, N-terminal domain CVS41_15100 PF03949 Malic enzyme, NAD binding domain CVS41_15115 PF01047 MarR family CVS41_15120 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_15120 PF00529 HlyD membrane-fusion protein of T1SS CVS41_15145 PF01679 Proteolipid membrane potential modulator CVS41_15155 PF13597 Anaerobic ribonucleoside-triphosphate reductase CVS41_15155 PF03477 ATP cone domain CVS41_15165 PF01653 NAD-dependent DNA ligase adenylation domain CVS41_15165 PF03120 NAD-dependent DNA ligase OB-fold domain CVS41_15165 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CVS41_15165 PF00533 BRCA1 C Terminus (BRCT) domain CVS41_15165 PF12826 Helix-hairpin-helix motif CVS41_15170 PF04354 ZipA, C-terminal FtsZ-binding domain CVS41_15175 PF02463 RecF/RecN/SMC N terminal domain CVS41_15175 PF06470 SMC proteins Flexible Hinge Domain CVS41_15185 PF03458 UPF0126 domain CVS41_15195 PF05951 Bacterial protein of unknown function (DUF882) CVS41_15200 PF01471 Putative peptidoglycan binding domain CVS41_15200 PF03734 L,D-transpeptidase catalytic domain CVS41_15215 PF00535 Glycosyl transferase family 2 CVS41_15230 PF00128 Alpha amylase, catalytic domain CVS41_15240 PF00072 Response regulator receiver domain CVS41_15240 PF00196 Bacterial regulatory proteins, luxR family CVS41_15260 PF02254 TrkA-N domain CVS41_15260 PF02080 TrkA-C domain CVS41_15260 PF00999 Sodium/hydrogen exchanger family CVS41_15265 PF00990 Diguanylate cyclase, GGDEF domain CVS41_15270 PF11734 TilS substrate C-terminal domain CVS41_15270 PF01171 PP-loop family CVS41_15270 PF09179 TilS substrate binding domain CVS41_15275 PF01431 Peptidase family M13 CVS41_15275 PF05649 Peptidase family M13 CVS41_15285 PF08543 Phosphomethylpyrimidine kinase CVS41_15290 PF01276 Orn/Lys/Arg decarboxylase, major domain CVS41_15290 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CVS41_15290 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CVS41_15295 PF13520 Amino acid permease CVS41_15300 PF18500 CadC C-terminal domain 1 CVS41_15300 PF00486 Transcriptional regulatory protein, C terminal CVS41_15305 PF13520 Amino acid permease CVS41_15310 PF03466 LysR substrate binding domain CVS41_15310 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15315 PF12706 Beta-lactamase superfamily domain CVS41_15330 PF03466 LysR substrate binding domain CVS41_15330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15340 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS41_15340 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS41_15340 PF00205 Thiamine pyrophosphate enzyme, central domain CVS41_15345 PF03306 Alpha-acetolactate decarboxylase CVS41_15350 PF03466 LysR substrate binding domain CVS41_15350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15355 PF00579 tRNA synthetases class I (W and Y) CVS41_15360 PF08525 Opacity-associated protein A N-terminal motif CVS41_15360 PF01551 Peptidase family M23 CVS41_15360 PF01476 LysM domain CVS41_15365 PF03702 Anhydro-N-acetylmuramic acid kinase CVS41_15375 PF01042 Endoribonuclease L-PSP CVS41_15385 PF01965 DJ-1/PfpI family CVS41_15390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15390 PF03466 LysR substrate binding domain CVS41_15395 PF08240 Alcohol dehydrogenase GroES-like domain CVS41_15395 PF00109 Beta-ketoacyl synthase, N-terminal domain CVS41_15395 PF00698 Acyl transferase domain CVS41_15395 PF02801 Beta-ketoacyl synthase, C-terminal domain CVS41_15395 PF14765 Polyketide synthase dehydratase CVS41_15395 PF16197 Ketoacyl-synthetase C-terminal extension CVS41_15395 PF00550 Phosphopantetheine attachment site CVS41_15395 PF08659 KR domain CVS41_15405 PF02780 Transketolase, C-terminal domain CVS41_15405 PF02779 Transketolase, pyrimidine binding domain CVS41_15405 PF00456 Transketolase, thiamine diphosphate binding domain CVS41_15410 PF00438 S-adenosylmethionine synthetase, N-terminal domain CVS41_15410 PF02773 S-adenosylmethionine synthetase, C-terminal domain CVS41_15410 PF02772 S-adenosylmethionine synthetase, central domain CVS41_15415 PF17283 SprT-like zinc ribbon domain CVS41_15415 PF10263 SprT-like family CVS41_15420 PF04231 Endonuclease I CVS41_15425 PF04452 RNA methyltransferase CVS41_15430 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CVS41_15430 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CVS41_15435 PF02622 Uncharacterized ACR, COG1678 CVS41_15440 PF03652 Holliday junction resolvase CVS41_15445 PF00854 POT family CVS41_15450 PF03466 LysR substrate binding domain CVS41_15450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15455 PF07690 Major Facilitator Superfamily CVS41_15460 PF17863 AAA lid domain CVS41_15460 PF07726 ATPase family associated with various cellular activities (AAA) CVS41_15470 PF13559 Domain of unknown function (DUF4129) CVS41_15470 PF11992 Domain of unknown function (DUF3488) CVS41_15470 PF01841 Transglutaminase-like superfamily CVS41_15475 PF01235 Sodium:alanine symporter family CVS41_15480 PF00923 Transaldolase/Fructose-6-phosphate aldolase CVS41_15490 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CVS41_15495 PF02811 PHP domain CVS41_15495 PF14579 Helix-hairpin-helix motif CVS41_15495 PF01336 OB-fold nucleic acid binding domain CVS41_15495 PF07733 Bacterial DNA polymerase III alpha NTPase domain CVS41_15495 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CVS41_15500 PF01351 Ribonuclease HII CVS41_15505 PF02684 Lipid-A-disaccharide synthetase CVS41_15510 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_15510 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CVS41_15515 PF07977 FabA-like domain CVS41_15520 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CVS41_15520 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_15525 PF03938 Outer membrane protein (OmpH-like) CVS41_15530 PF01103 Surface antigen CVS41_15530 PF07244 Surface antigen variable number repeat CVS41_15535 PF17820 PDZ domain CVS41_15535 PF02163 Peptidase family M50 CVS41_15540 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CVS41_15540 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CVS41_15540 PF13288 DXP reductoisomerase C-terminal domain CVS41_15550 PF01255 Putative undecaprenyl diphosphate synthase CVS41_15555 PF01765 Ribosome recycling factor CVS41_15560 PF00696 Amino acid kinase family CVS41_15565 PF00889 Elongation factor TS CVS41_15570 PF00318 Ribosomal protein S2 CVS41_15575 PF00557 Metallopeptidase family M24 CVS41_15580 PF01909 Nucleotidyltransferase domain CVS41_15580 PF01966 HD domain CVS41_15580 PF08335 GlnD PII-uridylyltransferase CVS41_15580 PF01842 ACT domain CVS41_15585 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CVS41_15585 PF00132 Bacterial transferase hexapeptide (six repeats) CVS41_15585 PF14602 Hexapeptide repeat of succinyl-transferase CVS41_15590 PF11944 Protein of unknown function (DUF3461) CVS41_15595 PF02378 Phosphotransferase system, EIIC CVS41_15595 PF00367 phosphotransferase system, EIIB CVS41_15600 PF07148 Maltose operon periplasmic protein precursor (MalM) CVS41_15605 PF02264 LamB porin CVS41_15610 PF00258 Flavodoxin CVS41_15615 PF00849 RNA pseudouridylate synthase CVS41_15620 PF04287 tRNA pseudouridine synthase C CVS41_15645 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CVS41_15650 PF07348 Syd protein (SUKH-2) CVS41_15655 PF14489 QueF-like protein CVS41_15655 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CVS41_15665 PF00990 Diguanylate cyclase, GGDEF domain CVS41_15665 PF17158 Membrane-associated sensor, integral membrane domain CVS41_15670 PF11892 Domain of unknown function (DUF3412) CVS41_15670 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases CVS41_15670 PF03641 Possible lysine decarboxylase CVS41_15675 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CVS41_15675 PF01367 5'-3' exonuclease, C-terminal SAM fold CVS41_15680 PF18324 Hypothetical protein TT1725 CVS41_15680 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS41_15690 PF01728 FtsJ-like methyltransferase CVS41_15690 PF18125 RlmM ferredoxin-like domain CVS41_15695 PF04241 Protein of unknown function (DUF423) CVS41_15705 PF03466 LysR substrate binding domain CVS41_15705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_15710 PF00672 HAMP domain CVS41_15710 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_15715 PF11798 IMS family HHH motif CVS41_15715 PF11799 impB/mucB/samB family C-terminal domain CVS41_15715 PF00817 impB/mucB/samB family CVS41_15725 PF01965 DJ-1/PfpI family CVS41_15730 PF08546 Ketopantoate reductase PanE/ApbA C terminal CVS41_15730 PF02558 Ketopantoate reductase PanE/ApbA CVS41_15735 PF04461 Protein of unknown function (DUF520) CVS41_15740 PF03502 Nucleoside-specific channel-forming protein, Tsx CVS41_15745 PF07690 Major Facilitator Superfamily CVS41_15750 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CVS41_15760 PF05175 Methyltransferase small domain CVS41_15765 PF01722 BolA-like protein CVS41_15770 PF11973 NQRA C-terminal domain CVS41_15770 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CVS41_15775 PF03116 NQR2, RnfD, RnfE family CVS41_15780 PF04205 FMN-binding domain CVS41_15785 PF02508 Rnf-Nqr subunit, membrane protein CVS41_15790 PF02508 Rnf-Nqr subunit, membrane protein CVS41_15795 PF00970 Oxidoreductase FAD-binding domain CVS41_15795 PF00175 Oxidoreductase NAD-binding domain CVS41_15795 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_15800 PF02424 ApbE family CVS41_15845 PF00106 short chain dehydrogenase CVS41_15855 PF00875 DNA photolyase CVS41_15855 PF03441 FAD binding domain of DNA photolyase CVS41_15860 PF13411 MerR HTH family regulatory protein CVS41_15865 PF08349 Protein of unknown function (DUF1722) CVS41_15880 PF06508 Queuosine biosynthesis protein QueC CVS41_15895 PF00800 Prephenate dehydratase CVS41_15895 PF01817 Chorismate mutase type II CVS41_15960 PF00672 HAMP domain CVS41_15960 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_15970 PF00665 Integrase core domain CVS41_15975 PF01695 IstB-like ATP binding protein CVS41_15990 PF09588 YqaJ-like viral recombinase domain CVS41_16035 PF04002 RadC-like JAB domain CVS41_16050 PF00224 Pyruvate kinase, barrel domain CVS41_16050 PF02887 Pyruvate kinase, alpha/beta domain CVS41_16055 PF07745 Glycosyl hydrolase family 53 CVS41_16060 PF02378 Phosphotransferase system, EIIC CVS41_16060 PF00367 phosphotransferase system, EIIB CVS41_16065 PF08532 Beta-galactosidase trimerisation domain CVS41_16065 PF02449 Beta-galactosidase CVS41_16065 PF08533 Beta-galactosidase C-terminal domain CVS41_16070 PF07745 Glycosyl hydrolase family 53 CVS41_16075 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_16080 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_16085 PF13416 Bacterial extracellular solute-binding protein CVS41_16090 PF00005 ABC transporter CVS41_16090 PF17912 MalK OB fold domain CVS41_16095 PF00672 HAMP domain CVS41_16095 PF02743 Cache domain CVS41_16095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16105 PF07745 Glycosyl hydrolase family 53 CVS41_16110 PF02264 LamB porin CVS41_16115 PF00356 Bacterial regulatory proteins, lacI family CVS41_16120 PF16363 GDP-mannose 4,6 dehydratase CVS41_16125 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CVS41_16125 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CVS41_16130 PF10509 Galactokinase galactose-binding signature CVS41_16130 PF00288 GHMP kinases N terminal domain CVS41_16130 PF08544 GHMP kinases C terminal CVS41_16170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16170 PF16591 Helical bimodular sensor domain CVS41_16170 PF00672 HAMP domain CVS41_16175 PF03573 outer membrane porin, OprD family CVS41_16180 PF00106 short chain dehydrogenase CVS41_16205 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CVS41_16235 PF07963 Prokaryotic N-terminal methylation motif CVS41_16235 PF00114 Pilin (bacterial filament) CVS41_16240 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS41_16240 PF12833 Helix-turn-helix domain CVS41_16240 PF02805 Metal binding domain of Ada CVS41_16240 PF06029 AlkA N-terminal domain CVS41_16245 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS41_16245 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CVS41_16250 PF01136 Peptidase family U32 CVS41_16250 PF12392 Collagenase CVS41_16255 PF01810 LysE type translocator CVS41_16260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_16260 PF03466 LysR substrate binding domain CVS41_16270 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16270 PF00672 HAMP domain CVS41_16270 PF02743 Cache domain CVS41_16285 PF02895 Signal transducing histidine kinase, homodimeric domain CVS41_16285 PF01584 CheW-like domain CVS41_16285 PF01627 Hpt domain CVS41_16285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_16285 PF07194 P2 response regulator binding domain CVS41_16290 PF12729 Four helix bundle sensory module for signal transduction CVS41_16290 PF00672 HAMP domain CVS41_16290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16295 PF01584 CheW-like domain CVS41_16300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16300 PF00672 HAMP domain CVS41_16305 PF01739 CheR methyltransferase, SAM binding domain CVS41_16305 PF03705 CheR methyltransferase, all-alpha domain CVS41_16310 PF03975 CheD chemotactic sensory transduction CVS41_16315 PF01339 CheB methylesterase CVS41_16315 PF00072 Response regulator receiver domain CVS41_16320 PF00575 S1 RNA binding domain CVS41_16320 PF01138 3' exoribonuclease family, domain 1 CVS41_16320 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CVS41_16320 PF00013 KH domain CVS41_16320 PF03725 3' exoribonuclease family, domain 2 CVS41_16325 PF00312 Ribosomal protein S15 CVS41_16330 PF01509 TruB family pseudouridylate synthase (N terminal domain) CVS41_16330 PF16198 tRNA pseudouridylate synthase B C-terminal domain CVS41_16330 PF09157 Pseudouridine synthase II TruB, C-terminal CVS41_16335 PF02033 Ribosome-binding factor A CVS41_16340 PF11987 Translation-initiation factor 2 CVS41_16340 PF08364 Bacterial translation initiation factor IF-2 associated region CVS41_16340 PF04760 Translation initiation factor IF-2, N-terminal region CVS41_16340 PF00009 Elongation factor Tu GTP binding domain CVS41_16345 PF00575 S1 RNA binding domain CVS41_16345 PF13184 NusA-like KH domain CVS41_16345 PF08529 NusA N-terminal domain CVS41_16350 PF17384 RimP C-terminal SH3 domain CVS41_16350 PF02576 RimP N-terminal domain CVS41_16365 PF03840 Preprotein translocase SecG subunit CVS41_16370 PF00121 Triosephosphate isomerase CVS41_16375 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVS41_16375 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVS41_16375 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVS41_16375 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVS41_16380 PF00809 Pterin binding enzyme CVS41_16385 PF06480 FtsH Extracellular CVS41_16385 PF01434 Peptidase family M41 CVS41_16385 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_16385 PF17862 AAA+ lid domain CVS41_16390 PF01728 FtsJ-like methyltransferase CVS41_16395 PF01985 CRS1 / YhbY (CRM) domain CVS41_16405 PF03449 Transcription elongation factor, N-terminal CVS41_16405 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS41_16410 PF00691 OmpA family CVS41_16410 PF13677 Membrane MotB of proton-channel complex MotA/MotB CVS41_16415 PF01618 MotA/TolQ/ExbB proton channel family CVS41_16420 PF02609 Exonuclease VII small subunit CVS41_16425 PF00348 Polyprenyl synthetase CVS41_16430 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CVS41_16430 PF02779 Transketolase, pyrimidine binding domain CVS41_16430 PF02780 Transketolase, C-terminal domain CVS41_16435 PF00149 Calcineurin-like phosphoesterase CVS41_16435 PF02872 5'-nucleotidase, C-terminal domain CVS41_16455 PF00158 Sigma-54 interaction domain CVS41_16455 PF02954 Bacterial regulatory protein, Fis family CVS41_16455 PF00072 Response regulator receiver domain CVS41_16460 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS41_16460 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_16470 PF04102 SlyX CVS41_16475 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_16475 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_16485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS41_16490 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_16490 PF00005 ABC transporter CVS41_16500 PF04608 Phosphatidylglycerophosphatase A CVS41_16505 PF02769 AIR synthase related protein, C-terminal domain CVS41_16505 PF00586 AIR synthase related protein, N-terminal domain CVS41_16510 PF01029 NusB family CVS41_16515 PF00885 6,7-dimethyl-8-ribityllumazine synthase CVS41_16520 PF00925 GTP cyclohydrolase II CVS41_16520 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CVS41_16525 PF00677 Lumazine binding domain CVS41_16530 PF01872 RibD C-terminal domain CVS41_16530 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVS41_16535 PF03477 ATP cone domain CVS41_16545 PF00464 Serine hydroxymethyltransferase CVS41_16555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_16555 PF00512 His Kinase A (phospho-acceptor) domain CVS41_16555 PF01627 Hpt domain CVS41_16555 PF00072 Response regulator receiver domain CVS41_16555 PF00672 HAMP domain CVS41_16560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS41_16570 PF00486 Transcriptional regulatory protein, C terminal CVS41_16570 PF00072 Response regulator receiver domain CVS41_16575 PF03264 NapC/NirT cytochrome c family, N-terminal region CVS41_16580 PF18364 Molybdopterin oxidoreductase N-terminal domain CVS41_16580 PF00384 Molybdopterin oxidoreductase CVS41_16580 PF01568 Molydopterin dinucleotide binding domain CVS41_16585 PF02613 Nitrate reductase delta subunit CVS41_16595 PF00563 EAL domain CVS41_16595 PF03707 Bacterial signalling protein N terminal repeat CVS41_16595 PF00990 Diguanylate cyclase, GGDEF domain CVS41_16605 PF00501 AMP-binding enzyme CVS41_16605 PF13193 AMP-binding enzyme C-terminal domain CVS41_16605 PF16177 Acetyl-coenzyme A synthetase N-terminus CVS41_16610 PF01220 Dehydroquinase class II CVS41_16615 PF00364 Biotin-requiring enzyme CVS41_16620 PF00289 Biotin carboxylase, N-terminal domain CVS41_16620 PF02785 Biotin carboxylase C-terminal domain CVS41_16620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS41_16630 PF00474 Sodium:solute symporter family CVS41_16635 PF02378 Phosphotransferase system, EIIC CVS41_16635 PF00367 phosphotransferase system, EIIB CVS41_16635 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CVS41_16640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_16640 PF03466 LysR substrate binding domain CVS41_16645 PF08240 Alcohol dehydrogenase GroES-like domain CVS41_16645 PF00107 Zinc-binding dehydrogenase CVS41_16655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS41_16655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS41_16660 PF12464 Maltose acetyltransferase CVS41_16660 PF14602 Hexapeptide repeat of succinyl-transferase CVS41_16665 PF00881 Nitroreductase family CVS41_16670 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS41_16670 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS41_16675 PF01343 Peptidase family S49 CVS41_16680 PF17969 L,D-transpeptidase C-terminal domain CVS41_16680 PF03734 L,D-transpeptidase catalytic domain CVS41_16695 PF02472 Biopolymer transport protein ExbD/TolR CVS41_16700 PF01618 MotA/TolQ/ExbB proton channel family CVS41_16705 PF01618 MotA/TolQ/ExbB proton channel family CVS41_16715 PF07715 TonB-dependent Receptor Plug Domain CVS41_16715 PF00593 TonB dependent receptor CVS41_16720 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_16725 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_16725 PF12911 N-terminal TM domain of oligopeptide transport permease C CVS41_16735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_16735 PF00005 ABC transporter CVS41_16740 PF00005 ABC transporter CVS41_16740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS41_16750 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CVS41_16750 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CVS41_16750 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CVS41_16755 PF01370 NAD dependent epimerase/dehydratase family CVS41_16760 PF09849 Uncharacterized protein conserved in bacteria (DUF2076) CVS41_16770 PF01464 Transglycosylase SLT domain CVS41_16785 PF00005 ABC transporter CVS41_16785 PF12848 ABC transporter CVS41_16795 PF00860 Permease family CVS41_16800 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS41_16805 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS41_16810 PF00672 HAMP domain CVS41_16810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_16820 PF00313 'Cold-shock' DNA-binding domain CVS41_16860 PF00929 Exonuclease CVS41_16865 PF03193 RsgA GTPase CVS41_16870 PF02666 Phosphatidylserine decarboxylase CVS41_16875 PF09905 DNA-binding protein VF530 CVS41_16890 PF00171 Aldehyde dehydrogenase family CVS41_16895 PF01472 PUA domain CVS41_16895 PF00696 Amino acid kinase family CVS41_16900 PF07417 Sigma factor-binding transcriptional regulator Crl CVS41_16910 PF00156 Phosphoribosyl transferase domain CVS41_16920 PF01546 Peptidase family M20/M25/M40 CVS41_16920 PF07687 Peptidase dimerisation domain CVS41_16925 PF00226 DnaJ domain CVS41_16925 PF05099 Tellurite resistance protein TerB CVS41_16930 PF00483 Nucleotidyl transferase CVS41_16935 PF01636 Phosphotransferase enzyme family CVS41_16940 PF03968 OstA-like protein CVS41_16940 PF04453 LPS transport system D CVS41_16945 PF09312 SurA N-terminal domain CVS41_16945 PF00639 PPIC-type PPIASE domain CVS41_16950 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CVS41_16955 PF00398 Ribosomal RNA adenine dimethylase CVS41_16960 PF04379 ApaG domain CVS41_16965 PF00149 Calcineurin-like phosphoesterase CVS41_16980 PF00296 Luciferase-like monooxygenase CVS41_16995 PF01018 GTP1/OBG CVS41_16995 PF01926 50S ribosome-binding GTPase CVS41_17000 PF01016 Ribosomal L27 protein CVS41_17005 PF00829 Ribosomal prokaryotic L21 protein CVS41_17010 PF00348 Polyprenyl synthetase CVS41_17015 PF09838 Uncharacterized protein conserved in bacteria (DUF2065) CVS41_17020 PF01145 SPFH domain / Band 7 family CVS41_17025 PF01145 SPFH domain / Band 7 family CVS41_17025 PF12221 Bacterial membrane protein N terminal CVS41_17030 PF13167 GTP-binding GTPase N-terminal CVS41_17030 PF16360 GTP-binding GTPase Middle Region CVS41_17030 PF01926 50S ribosome-binding GTPase CVS41_17035 PF17209 Hfq protein CVS41_17045 PF08676 MutL C terminal dimerisation domain CVS41_17045 PF01119 DNA mismatch repair protein, C-terminal domain CVS41_17050 PF08676 MutL C terminal dimerisation domain CVS41_17050 PF01119 DNA mismatch repair protein, C-terminal domain CVS41_17055 PF01520 N-acetylmuramoyl-L-alanine amidase CVS41_17060 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CVS41_17065 PF03853 YjeF-related protein N-terminus CVS41_17065 PF01256 Carbohydrate kinase CVS41_17070 PF08331 Domain of unknown function (DUF1730) CVS41_17075 PF00480 ROK family CVS41_17085 PF09383 NIL domain CVS41_17085 PF00005 ABC transporter CVS41_17090 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_17095 PF03180 NLPA lipoprotein CVS41_17100 PF02357 Transcription termination factor nusG CVS41_17105 PF12729 Four helix bundle sensory module for signal transduction CVS41_17105 PF00672 HAMP domain CVS41_17105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_17110 PF03707 Bacterial signalling protein N terminal repeat CVS41_17110 PF00563 EAL domain CVS41_17110 PF00990 Diguanylate cyclase, GGDEF domain CVS41_17115 PF00072 Response regulator receiver domain CVS41_17115 PF09456 RcsC Alpha-Beta-Loop (ABL) CVS41_17115 PF00512 His Kinase A (phospho-acceptor) domain CVS41_17115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_17125 PF13286 Phosphohydrolase-associated domain CVS41_17125 PF01966 HD domain CVS41_17130 PF18415 Histidine kinase receptor ArcB trans-membrane domain CVS41_17130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS41_17130 PF00072 Response regulator receiver domain CVS41_17130 PF01627 Hpt domain CVS41_17130 PF00512 His Kinase A (phospho-acceptor) domain CVS41_17130 PF00989 PAS fold CVS41_17150 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CVS41_17155 PF03466 LysR substrate binding domain CVS41_17155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_17165 PF01259 SAICAR synthetase CVS41_17170 PF06804 NlpB/DapX lipoprotein CVS41_17175 PF00701 Dihydrodipicolinate synthetase family CVS41_17180 PF01842 ACT domain CVS41_17185 PF00578 AhpC/TSA family CVS41_17190 PF03887 YfbU domain CVS41_17195 PF04217 Protein of unknown function, DUF412 CVS41_17200 PF00871 Acetokinase family CVS41_17205 PF07085 DRTGG domain CVS41_17205 PF01515 Phosphate acetyl/butaryl transferase CVS41_17215 PF00483 Nucleotidyl transferase CVS41_17220 PF00854 POT family CVS41_17225 PF00072 Response regulator receiver domain CVS41_17255 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CVS41_17260 PF02321 Outer membrane efflux protein CVS41_17265 PF01207 Dihydrouridine synthase (Dus) CVS41_17270 PF02954 Bacterial regulatory protein, Fis family CVS41_17290 PF01546 Peptidase family M20/M25/M40 CVS41_17295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_17295 PF03466 LysR substrate binding domain CVS41_17300 PF01810 LysE type translocator CVS41_17305 PF10369 Small subunit of acetolactate synthase CVS41_17310 PF00205 Thiamine pyrophosphate enzyme, central domain CVS41_17310 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS41_17310 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS41_17325 PF01569 PAP2 superfamily CVS41_17335 PF08502 LeuA allosteric (dimerisation) domain CVS41_17335 PF00682 HMGL-like CVS41_17340 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS41_17345 PF00330 Aconitase family (aconitate hydratase) CVS41_17350 PF00694 Aconitase C-terminal domain CVS41_17370 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_17375 PF00005 ABC transporter CVS41_17380 PF02562 PhoH-like protein CVS41_17380 PF13638 PIN domain CVS41_17390 PF08343 Ribonucleotide reductase N-terminal CVS41_17390 PF00317 Ribonucleotide reductase, all-alpha domain CVS41_17390 PF02867 Ribonucleotide reductase, barrel domain CVS41_17420 PF03707 Bacterial signalling protein N terminal repeat CVS41_17420 PF00990 Diguanylate cyclase, GGDEF domain CVS41_17420 PF00563 EAL domain CVS41_17430 PF00118 TCP-1/cpn60 chaperonin family CVS41_17435 PF00166 Chaperonin 10 Kd subunit CVS41_17445 PF04186 FxsA cytoplasmic membrane protein CVS41_17450 PF00206 Lyase CVS41_17450 PF10415 Fumarase C C-terminus CVS41_17455 PF03605 Anaerobic c4-dicarboxylate membrane transporter CVS41_17460 PF00814 Glycoprotease family CVS41_17465 PF01165 Ribosomal protein S21 CVS41_17470 PF09424 Yqey-like protein CVS41_17475 PF08278 DNA primase DnaG DnaB-binding CVS41_17475 PF01807 CHC2 zinc finger CVS41_17475 PF10410 DnaB-helicase binding domain of primase CVS41_17475 PF08275 DNA primase catalytic core, N-terminal domain CVS41_17480 PF04545 Sigma-70, region 4 CVS41_17480 PF04546 Sigma-70, non-essential region CVS41_17480 PF04542 Sigma-70 region 2 CVS41_17480 PF00140 Sigma-70 factor, region 1.2 CVS41_17480 PF03979 Sigma-70 factor, region 1.1 CVS41_17480 PF04539 Sigma-70 region 3 CVS41_17525 PF00356 Bacterial regulatory proteins, lacI family CVS41_17535 PF00672 HAMP domain CVS41_17535 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_17540 PF00933 Glycosyl hydrolase family 3 N terminal domain CVS41_17550 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_17555 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS41_17555 PF02378 Phosphotransferase system, EIIC CVS41_17560 PF00232 Glycosyl hydrolase family 1 CVS41_17565 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CVS41_17570 PF00722 Glycosyl hydrolases family 16 CVS41_17600 PF00772 DnaB-like helicase N terminal domain CVS41_17600 PF03796 DnaB-like helicase C terminal domain CVS41_17630 PF02844 Phosphoribosylglycinamide synthetase, N domain CVS41_17630 PF02843 Phosphoribosylglycinamide synthetase, C domain CVS41_17630 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CVS41_17635 PF01808 AICARFT/IMPCHase bienzyme CVS41_17635 PF02142 MGS-like domain CVS41_17640 PF13411 MerR HTH family regulatory protein CVS41_17645 PF03889 Alternative ribosome-rescue factor A CVS41_17650 PF06969 HemN C-terminal domain CVS41_17650 PF04055 Radical SAM superfamily CVS41_17655 PF01725 Ham1 family CVS41_17660 PF07690 Major Facilitator Superfamily CVS41_17665 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CVS41_17665 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CVS41_17675 PF13302 Acetyltransferase (GNAT) domain CVS41_17680 PF13302 Acetyltransferase (GNAT) domain CVS41_17685 PF04151 Bacterial pre-peptidase C-terminal domain CVS41_17685 PF07504 Fungalysin/Thermolysin Propeptide Motif CVS41_17685 PF03413 Peptidase propeptide and YPEB domain CVS41_17685 PF01447 Thermolysin metallopeptidase, catalytic domain CVS41_17685 PF02868 Thermolysin metallopeptidase, alpha-helical domain CVS41_17690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_17690 PF03466 LysR substrate binding domain CVS41_17695 PF07690 Major Facilitator Superfamily CVS41_17700 PF00583 Acetyltransferase (GNAT) family CVS41_17705 PF03144 Elongation factor Tu domain 2 CVS41_17705 PF16658 Class II release factor RF3, C-terminal domain CVS41_17705 PF00009 Elongation factor Tu GTP binding domain CVS41_17715 PF00990 Diguanylate cyclase, GGDEF domain CVS41_17715 PF00072 Response regulator receiver domain CVS41_17720 PF05762 VWA domain containing CoxE-like protein CVS41_17725 PF17868 AAA lid domain CVS41_17725 PF12592 Protein of unknown function (DUF3763) CVS41_17725 PF07728 AAA domain (dynein-related subfamily) CVS41_17735 PF13673 Acetyltransferase (GNAT) domain CVS41_17735 PF00583 Acetyltransferase (GNAT) family CVS41_17745 PF00501 AMP-binding enzyme CVS41_17750 PF04262 Glutamate-cysteine ligase CVS41_17755 PF00675 Insulinase (Peptidase family M16) CVS41_17755 PF05193 Peptidase M16 inactive domain CVS41_17760 PF09335 SNARE associated Golgi protein CVS41_17765 PF00107 Zinc-binding dehydrogenase CVS41_17765 PF08240 Alcohol dehydrogenase GroES-like domain CVS41_17790 PF00175 Oxidoreductase NAD-binding domain CVS41_17790 PF00970 Oxidoreductase FAD-binding domain CVS41_17795 PF03948 Ribosomal protein L9, C-terminal domain CVS41_17795 PF01281 Ribosomal protein L9, N-terminal domain CVS41_17800 PF01084 Ribosomal protein S18 CVS41_17805 PF01250 Ribosomal protein S6 CVS41_17810 PF01566 Natural resistance-associated macrophage protein CVS41_17815 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVS41_17815 PF02272 DHHA1 domain CVS41_17815 PF01411 tRNA synthetases class II (A) CVS41_17825 PF00216 Bacterial DNA-binding protein CVS41_17830 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CVS41_17835 PF07238 PilZ domain CVS41_17840 PF18073 Rubredoxin metal binding domain CVS41_17855 PF18429 Domain of unknown function (DUF5609) CVS41_17865 PF01048 Phosphorylase superfamily CVS41_17870 PF01676 Metalloenzyme superfamily CVS41_17875 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CVS41_17875 PF02885 Glycosyl transferase family, helical bundle domain CVS41_17875 PF00591 Glycosyl transferase family, a/b domain CVS41_17880 PF01791 DeoC/LacD family aldolase CVS41_17890 PF07670 Nucleoside recognition CVS41_17890 PF07662 Na+ dependent nucleoside transporter C-terminus CVS41_17890 PF01773 Na+ dependent nucleoside transporter N-terminus CVS41_17895 PF01026 TatD related DNase CVS41_17900 PF07963 Prokaryotic N-terminal methylation motif CVS41_17900 PF14245 Type IV pilin PilA CVS41_17910 PF02664 S-Ribosylhomocysteinase (LuxS) CVS41_17920 PF00543 Nitrogen regulatory protein P-II CVS41_17925 PF02540 NAD synthase CVS41_17925 PF00795 Carbon-nitrogen hydrolase CVS41_17960 PF05567 Neisseria PilC beta-propeller domain CVS41_17985 PF02401 LytB protein CVS41_17990 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS41_17995 PF01252 Signal peptidase (SPase) II CVS41_18000 PF08264 Anticodon-binding domain of tRNA CVS41_18000 PF00133 tRNA synthetases class I (I, L, M and V) CVS41_18000 PF06827 Zinc finger found in FPG and IleRS CVS41_18005 PF06574 FAD synthetase CVS41_18005 PF01687 Riboflavin kinase CVS41_18010 PF03023 Lipid II flippase MurJ CVS41_18015 PF01649 Ribosomal protein S20 CVS41_18020 PF01022 Bacterial regulatory protein, arsR family CVS41_18025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_18025 PF03466 LysR substrate binding domain CVS41_18035 PF06965 Na+/H+ antiporter 1 CVS41_18040 PF00303 Thymidylate synthase CVS41_18045 PF01790 Prolipoprotein diacylglyceryl transferase CVS41_18050 PF00391 PEP-utilising enzyme, mobile domain CVS41_18050 PF02896 PEP-utilising enzyme, TIM barrel domain CVS41_18050 PF05524 PEP-utilising enzyme, N-terminal CVS41_18050 PF01590 GAF domain CVS41_18055 PF00293 NUDIX domain CVS41_18060 PF02976 DNA mismatch repair enzyme MutH CVS41_18070 PF01245 Ribosomal protein L19 CVS41_18075 PF01746 tRNA (Guanine-1)-methyltransferase CVS41_18080 PF01782 RimM N-terminal domain CVS41_18080 PF05239 PRC-barrel domain CVS41_18085 PF00886 Ribosomal protein S16 CVS41_18090 PF02881 SRP54-type protein, helical bundle domain CVS41_18090 PF00448 SRP54-type protein, GTPase domain CVS41_18090 PF02978 Signal peptide binding domain CVS41_18095 PF01578 Cytochrome C assembly protein CVS41_18100 PF03471 Transporter associated domain CVS41_18100 PF00571 CBS domain CVS41_18100 PF01595 Cyclin M transmembrane N-terminal domain CVS41_18105 PF02082 Transcriptional regulator CVS41_18110 PF00175 Oxidoreductase NAD-binding domain CVS41_18110 PF00970 Oxidoreductase FAD-binding domain CVS41_18110 PF00042 Globin CVS41_18115 PF08238 Sel1 repeat CVS41_18120 PF00056 lactate/malate dehydrogenase, NAD binding domain CVS41_18120 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CVS41_18125 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_18130 PF00528 Binding-protein-dependent transport system inner membrane component CVS41_18135 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_18140 PF00005 ABC transporter CVS41_18145 PF02863 Arginine repressor, C-terminal domain CVS41_18145 PF01316 Arginine repressor, DNA binding domain CVS41_18150 PF04261 Dyp-type peroxidase family CVS41_18155 PF08402 TOBE domain CVS41_18155 PF00005 ABC transporter CVS41_18165 PF13416 Bacterial extracellular solute-binding protein CVS41_18170 PF00543 Nitrogen regulatory protein P-II CVS41_18175 PF00472 RF-1 domain CVS41_18180 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS41_18180 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CVS41_18190 PF03883 Peroxide stress protein YaaA CVS41_18195 PF00437 Type II/IV secretion system protein CVS41_18200 PF00437 Type II/IV secretion system protein CVS41_18205 PF01168 Alanine racemase, N-terminal domain CVS41_18210 PF14748 Pyrroline-5-carboxylate reductase dimerisation CVS41_18210 PF03807 NADP oxidoreductase coenzyme F420-dependent CVS41_18215 PF02325 YGGT family CVS41_18220 PF02594 Uncharacterised ACR, YggU family COG1872 CVS41_18230 PF01773 Na+ dependent nucleoside transporter N-terminus CVS41_18230 PF07662 Na+ dependent nucleoside transporter C-terminus CVS41_18230 PF07670 Nucleoside recognition CVS41_18235 PF03466 LysR substrate binding domain CVS41_18235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_18240 PF00255 Glutathione peroxidase CVS41_18250 PF02595 Glycerate kinase family CVS41_18255 PF02447 GntP family permease CVS41_18260 PF13556 PucR C-terminal helix-turn-helix domain CVS41_18260 PF17853 GGDEF-like domain CVS41_18260 PF05651 Putative sugar diacid recognition CVS41_18265 PF06062 Uncharacterised protein family (UPF0231) CVS41_18285 PF00270 DEAD/DEAH box helicase CVS41_18285 PF00271 Helicase conserved C-terminal domain CVS41_18295 PF08534 Redoxin CVS41_18300 PF00403 Heavy-metal-associated domain CVS41_18305 PF18494 Pullulanase Ins domain CVS41_18305 PF17967 Pullulanase N2 domain CVS41_18305 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS41_18305 PF03714 Bacterial pullanase-associated domain CVS41_18305 PF11852 Domain of unknown function (DUF3372) CVS41_18320 PF02583 Metal-sensitive transcriptional repressor CVS41_18325 PF05420 Cellulose synthase operon protein C C-terminus (BCSC_C) CVS41_18330 PF01270 Glycosyl hydrolases family 8 CVS41_18335 PF03170 Bacterial cellulose synthase subunit CVS41_18340 PF00535 Glycosyl transferase family 2 CVS41_18340 PF07238 PilZ domain CVS41_18340 PF03552 Cellulose synthase CVS41_18345 PF06564 Cellulose biosynthesis protein BcsQ CVS41_18355 PF11658 Cellulose biosynthesis protein BcsG CVS41_18360 PF00155 Aminotransferase class I and II CVS41_18365 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_18365 PF03466 LysR substrate binding domain CVS41_18375 PF04055 Radical SAM superfamily CVS41_18380 PF11230 Protein of unknown function (DUF3029) CVS41_18405 PF00970 Oxidoreductase FAD-binding domain CVS41_18405 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS41_18405 PF00175 Oxidoreductase NAD-binding domain CVS41_18420 PF00535 Glycosyl transferase family 2 CVS41_18425 PF01522 Polysaccharide deacetylase CVS41_18425 PF14883 Hypothetical glycosyl hydrolase family 13 CVS41_18440 PF00672 HAMP domain CVS41_18440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS41_18440 PF12729 Four helix bundle sensory module for signal transduction CVS41_18445 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CVS41_18445 PF18416 N-acetylglucosamine binding protein domain 2 CVS41_18450 PF13194 Domain of unknown function (DUF4010) CVS41_18455 PF14602 Hexapeptide repeat of succinyl-transferase CVS41_18455 PF12464 Maltose acetyltransferase CVS41_18470 PF13419 Haloacid dehalogenase-like hydrolase CVS41_18475 PF00293 NUDIX domain CVS41_18480 PF00459 Inositol monophosphatase family CVS41_18485 PF03222 Tryptophan/tyrosine permease family CVS41_18490 PF01588 Putative tRNA binding domain CVS41_18495 PF02311 AraC-like ligand binding domain CVS41_18495 PF12833 Helix-turn-helix domain CVS41_18500 PF01340 Met Apo-repressor, MetJ CVS41_18505 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS41_18510 PF03447 Homoserine dehydrogenase, NAD binding domain CVS41_18510 PF00742 Homoserine dehydrogenase CVS41_18510 PF00696 Amino acid kinase family CVS41_18515 PF01384 Phosphate transporter family CVS41_18520 PF01865 Protein of unknown function DUF47 CVS41_18530 PF00701 Dihydrodipicolinate synthetase family CVS41_18535 PF05175 Methyltransferase small domain CVS41_18535 PF08468 Methyltransferase small domain N-terminal CVS41_18540 PF00483 Nucleotidyl transferase CVS41_18545 PF08323 Starch synthase catalytic domain CVS41_18545 PF00534 Glycosyl transferases group 1 CVS41_18585 PF03553 Na+/H+ antiporter family CVS41_18590 PF01521 Iron-sulphur cluster biosynthesis CVS41_18600 PF00654 Voltage gated chloride channel CVS41_18605 PF00202 Aminotransferase class-III CVS41_18620 PF13462 Thioredoxin CVS41_18620 PF06965 Na+/H+ antiporter 1 CVS41_18650 PF18337 RapA N-terminal Tudor like domain CVS41_18650 PF18339 RapA N-terminal Tudor like domain 1 CVS41_18650 PF00176 SNF2 family N-terminal domain CVS41_18650 PF12137 RNA polymerase recycling family C-terminal CVS41_18650 PF00271 Helicase conserved C-terminal domain CVS41_18655 PF00849 RNA pseudouridylate synthase CVS41_18665 PF12464 Maltose acetyltransferase CVS41_18665 PF14602 Hexapeptide repeat of succinyl-transferase CVS41_18670 PF00128 Alpha amylase, catalytic domain CVS41_18670 PF11941 Domain of unknown function (DUF3459) CVS41_18675 PF02378 Phosphotransferase system, EIIC CVS41_18675 PF00367 phosphotransferase system, EIIB CVS41_18680 PF00356 Bacterial regulatory proteins, lacI family CVS41_18695 PF17763 Glutaminase/Asparaginase C-terminal domain CVS41_18695 PF00710 Asparaginase, N-terminal CVS41_18700 PF03471 Transporter associated domain CVS41_18700 PF01595 Cyclin M transmembrane N-terminal domain CVS41_18700 PF00571 CBS domain CVS41_18705 PF09335 SNARE associated Golgi protein CVS41_18710 PF00768 D-alanyl-D-alanine carboxypeptidase CVS41_18745 PF02599 Global regulator protein family CVS41_18750 PF13840 ACT domain CVS41_18750 PF01842 ACT domain CVS41_18750 PF00696 Amino acid kinase family CVS41_18755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVS41_18755 PF02272 DHHA1 domain CVS41_18755 PF01411 tRNA synthetases class II (A) CVS41_18760 PF02631 RecX family CVS41_18765 PF00154 recA bacterial DNA recombination protein CVS41_18770 PF02464 Competence-damaged protein CVS41_18785 PF17862 AAA+ lid domain CVS41_18785 PF00004 ATPase family associated with various cellular activities (AAA) CVS41_18785 PF01434 Peptidase family M41 CVS41_18805 PF12161 HsdM N-terminal domain CVS41_18805 PF02384 N-6 DNA Methylase CVS41_18835 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CVS41_18835 PF11867 Domain of unknown function (DUF3387) CVS41_18835 PF18766 SWI2/SNF2 ATPase CVS41_18860 PF05190 MutS family domain IV CVS41_18860 PF05192 MutS domain III CVS41_18860 PF05188 MutS domain II CVS41_18860 PF00488 MutS domain V CVS41_18860 PF01624 MutS domain I CVS41_18865 PF01734 Patatin-like phospholipase CVS41_18875 PF04172 LrgB-like family CVS41_18880 PF03788 LrgA family CVS41_18885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_18885 PF03466 LysR substrate binding domain CVS41_18900 PF04073 Aminoacyl-tRNA editing domain CVS41_18920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVS41_18925 PF04055 Radical SAM superfamily CVS41_18925 PF06968 Biotin and Thiamin Synthesis associated domain CVS41_18930 PF05690 Thiazole biosynthesis protein ThiG CVS41_18940 PF00899 ThiF family CVS41_18945 PF02581 Thiamine monophosphate synthase CVS41_18950 PF01964 Radical SAM ThiC family CVS41_18950 PF13667 ThiC-associated domain CVS41_18955 PF01117 Aerolysin toxin CVS41_18955 PF03440 Aerolysin/Pertussis toxin (APT) domain CVS41_18970 PF00072 Response regulator receiver domain CVS41_18970 PF00486 Transcriptional regulatory protein, C terminal CVS41_18980 PF08443 RimK-like ATP-grasp domain CVS41_18980 PF18030 RimK PreATP-grasp domain CVS41_18985 PF02574 Homocysteine S-methyltransferase CVS41_18985 PF00809 Pterin binding enzyme CVS41_18985 PF02965 Vitamin B12 dependent methionine synthase, activation domain CVS41_18985 PF02310 B12 binding domain CVS41_18985 PF02607 B12 binding domain CVS41_18990 PF00999 Sodium/hydrogen exchanger family CVS41_19015 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CVS41_19025 PF07690 Major Facilitator Superfamily CVS41_19030 PF01914 MarC family integral membrane protein CVS41_19040 PF01523 Putative modulator of DNA gyrase CVS41_19045 PF00795 Carbon-nitrogen hydrolase CVS41_19060 PF13116 Protein of unknown function CVS41_19060 PF13502 AsmA-like C-terminal region CVS41_19065 PF10150 Ribonuclease E/G family CVS41_19065 PF00575 S1 RNA binding domain CVS41_19070 PF02545 Maf-like protein CVS41_19075 PF04093 rod shape-determining protein MreD CVS41_19080 PF04085 rod shape-determining protein MreC CVS41_19110 PF00114 Pilin (bacterial filament) CVS41_19110 PF07963 Prokaryotic N-terminal methylation motif CVS41_19115 PF00114 Pilin (bacterial filament) CVS41_19115 PF07963 Prokaryotic N-terminal methylation motif CVS41_19130 PF00482 Type II secretion system (T2SS), protein F CVS41_19135 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS41_19135 PF00437 Type II/IV secretion system protein CVS41_19150 PF03958 Bacterial type II/III secretion system short domain CVS41_19150 PF00263 Bacterial type II and III secretion system protein CVS41_19180 PF00563 EAL domain CVS41_19180 PF00990 Diguanylate cyclase, GGDEF domain CVS41_19180 PF17157 Gammaproteobacterial periplasmic sensor domain CVS41_19185 PF12792 CSS motif domain associated with EAL CVS41_19185 PF00563 EAL domain CVS41_19190 PF01699 Sodium/calcium exchanger protein CVS41_19195 PF00221 Aromatic amino acid lyase CVS41_19200 PF17391 Urocanase N-terminal domain CVS41_19200 PF01175 Urocanase Rossmann-like domain CVS41_19200 PF17392 Urocanase C-terminal domain CVS41_19205 PF00491 Arginase family CVS41_19210 PF01979 Amidohydrolase family CVS41_19215 PF00392 Bacterial regulatory proteins, gntR family CVS41_19215 PF07702 UTRA domain CVS41_19220 PF00484 Carbonic anhydrase CVS41_19225 PF04542 Sigma-70 region 2 CVS41_19225 PF04545 Sigma-70, region 4 CVS41_19225 PF00140 Sigma-70 factor, region 1.2 CVS41_19230 PF18075 FtsX extracellular domain CVS41_19235 PF00005 ABC transporter CVS41_19240 PF00448 SRP54-type protein, GTPase domain CVS41_19240 PF02881 SRP54-type protein, helical bundle domain CVS41_19265 PF00999 Sodium/hydrogen exchanger family CVS41_19265 PF02254 TrkA-N domain CVS41_19270 PF02525 Flavodoxin-like fold CVS41_19275 PF03466 LysR substrate binding domain CVS41_19275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_19280 PF00106 short chain dehydrogenase CVS41_19295 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CVS41_19295 PF00326 Prolyl oligopeptidase family CVS41_19310 PF13091 PLD-like domain CVS41_19315 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS41_19315 PF01464 Transglycosylase SLT domain CVS41_19325 PF02416 mttA/Hcf106 family CVS41_19330 PF03466 LysR substrate binding domain CVS41_19330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_19335 PF01914 MarC family integral membrane protein CVS41_19340 PF10678 Protein of unknown function (DUF2492) CVS41_19345 PF00375 Sodium:dicarboxylate symporter family CVS41_19355 PF03466 LysR substrate binding domain CVS41_19355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS41_19360 PF13533 Biotin-lipoyl like CVS41_19365 PF07690 Major Facilitator Superfamily CVS41_19370 PF07947 YhhN family CVS41_19395 PF00440 Bacterial regulatory proteins, tetR family CVS41_19435 PF03143 Elongation factor Tu C-terminal domain CVS41_19435 PF03144 Elongation factor Tu domain 2 CVS41_19435 PF00009 Elongation factor Tu GTP binding domain CVS41_19440 PF14492 Elongation Factor G, domain II CVS41_19440 PF03764 Elongation factor G, domain IV CVS41_19440 PF00679 Elongation factor G C-terminus CVS41_19440 PF00009 Elongation factor Tu GTP binding domain CVS41_19440 PF03144 Elongation factor Tu domain 2 CVS41_19445 PF00177 Ribosomal protein S7p/S5e CVS41_19450 PF00164 Ribosomal protein S12/S23 CVS41_19455 PF04077 DsrH like protein CVS41_19460 PF02635 DsrE/DsrF-like family CVS41_19465 PF02635 DsrE/DsrF-like family CVS41_19470 PF01042 Endoribonuclease L-PSP CVS41_19475 PF13309 HTH domain CVS41_19475 PF08348 YheO-like PAS domain CVS41_19480 PF04997 RNA polymerase Rpb1, domain 1 CVS41_19480 PF04998 RNA polymerase Rpb1, domain 5 CVS41_19480 PF05000 RNA polymerase Rpb1, domain 4 CVS41_19480 PF04983 RNA polymerase Rpb1, domain 3 CVS41_19480 PF00623 RNA polymerase Rpb1, domain 2 CVS41_19485 PF04565 RNA polymerase Rpb2, domain 3 CVS41_19485 PF00562 RNA polymerase Rpb2, domain 6 CVS41_19485 PF04561 RNA polymerase Rpb2, domain 2 CVS41_19485 PF04560 RNA polymerase Rpb2, domain 7 CVS41_19485 PF04563 RNA polymerase beta subunit CVS41_19485 PF10385 RNA polymerase beta subunit external 1 domain CVS41_19490 PF16320 Ribosomal protein L7/L12 dimerisation domain CVS41_19490 PF00542 Ribosomal protein L7/L12 C-terminal domain CVS41_19495 PF00466 Ribosomal protein L10 CVS41_19500 PF00687 Ribosomal protein L1p/L10e family CVS41_19505 PF03946 Ribosomal protein L11, N-terminal domain CVS41_19505 PF00298 Ribosomal protein L11, RNA binding domain CVS41_19510 PF00467 KOW motif CVS41_19510 PF02357 Transcription termination factor nusG CVS41_19515 PF00584 SecE/Sec61-gamma subunits of protein translocation complex