CVS42_00010 PF01926 50S ribosome-binding GTPase CVS42_00010 PF10396 GTP-binding protein TrmE N-terminus CVS42_00010 PF12631 Catalytic cysteine-containing C-terminus of GTPase, MnmE CVS42_00015 PF02096 60Kd inner membrane protein CVS42_00015 PF14849 YidC periplasmic domain CVS42_00020 PF01809 CVS42_00020 CVS42_00025 PF00825 Ribonuclease P CVS42_00030 PF00468 Ribosomal protein L34 CVS42_00035 PF00005 ABC transporter CVS42_00040 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_00045 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_00050 PF00308 Bacterial dnaA protein CVS42_00050 PF08299 Bacterial dnaA protein helix-turn-helix CVS42_00050 PF11638 DnaA N-terminal domain CVS42_00055 PF00712 DNA polymerase III beta subunit, N-terminal domain CVS42_00055 PF02767 DNA polymerase III beta subunit, central domain CVS42_00055 PF02768 DNA polymerase III beta subunit, C-terminal domain CVS42_00060 PF02463 RecF/RecN/SMC N terminal domain CVS42_00065 PF00204 DNA gyrase B CVS42_00065 PF00986 DNA gyrase B subunit, carboxyl terminus CVS42_00065 PF01751 Toprim domain CVS42_00065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_00070 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_00075 PF08279 HTH domain CVS42_00075 PF13280 CVS42_00075 CVS42_00080 PF01965 DJ-1/PfpI family CVS42_00080 PF12833 Helix-turn-helix domain CVS42_00085 PF13483 Beta-lactamase superfamily domain CVS42_00090 PF00011 Hsp20/alpha crystallin family CVS42_00095 PF00011 Hsp20/alpha crystallin family CVS42_00100 PF00155 Aminotransferase class I and II CVS42_00110 PF12833 Helix-turn-helix domain CVS42_00115 PF07690 Major Facilitator Superfamily CVS42_00120 PF00072 Response regulator receiver domain CVS42_00120 PF00486 Transcriptional regulatory protein, C terminal CVS42_00125 PF00512 His Kinase A (phospho-acceptor) domain CVS42_00125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_00125 PF02702 Osmosensitive K+ channel His kinase sensor domain CVS42_00125 PF13493 Domain of unknown function (DUF4118) CVS42_00130 PF02669 CVS42_00130 CVS42_00135 PF00122 E1-E2 ATPase CVS42_00135 PF00702 haloacid dehalogenase-like hydrolase CVS42_00140 PF03814 CVS42_00140 CVS42_00150 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS42_00150 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_00155 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_00155 PF13426 PAS domain CVS42_00155 PF17149 CVS42_00155 CVS42_00160 PF00873 AcrB/AcrD/AcrF family CVS42_00165 PF00529 HlyD family secretion protein CVS42_00165 PF16576 CVS42_00165 CVS42_00170 PF00440 Bacterial regulatory proteins, tetR family CVS42_00195 PF00652 Ricin-type beta-trefoil lectin domain CVS42_00200 PF00224 Pyruvate kinase, barrel domain CVS42_00200 PF02887 Pyruvate kinase, alpha/beta domain CVS42_00205 PF07690 Major Facilitator Superfamily CVS42_00210 PF13343 Bacterial extracellular solute-binding protein CVS42_00215 PF00512 His Kinase A (phospho-acceptor) domain CVS42_00215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_00215 PF13426 PAS domain CVS42_00220 PF00072 Response regulator receiver domain CVS42_00220 PF02954 Bacterial regulatory protein, Fis family CVS42_00220 PF14532 Sigma-54 interaction domain CVS42_00230 PF08282 haloacid dehalogenase-like hydrolase CVS42_00235 PF12146 Putative lysophospholipase CVS42_00240 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_00245 PF00588 SpoU rRNA Methylase family CVS42_00245 PF12105 SpoU, rRNA methylase, C-terminal CVS42_00250 PF02824 TGS domain CVS42_00250 PF04607 Region found in RelA / SpoT proteins CVS42_00250 PF13291 ACT domain CVS42_00250 PF13328 HD domain CVS42_00255 PF01192 RNA polymerase Rpb6 CVS42_00260 PF00625 Guanylate kinase CVS42_00270 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CVS42_00275 PF06293 Lipopolysaccharide kinase (Kdo/WaaP) family CVS42_00280 PF00990 GGDEF domain CVS42_00280 PF08447 PAS fold CVS42_00300 PF00892 EamA-like transporter family CVS42_00305 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_00305 PF03466 LysR substrate binding domain CVS42_00310 PF00579 tRNA synthetases class I (W and Y) CVS42_00315 PF00582 Universal stress protein family CVS42_00320 PF07055 Enoyl reductase FAD binding domain CVS42_00320 PF12241 Trans-2-enoyl-CoA reductase catalytic region CVS42_00320 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CVS42_00325 PF00210 Ferritin-like domain CVS42_00330 PF03486 HI0933-like protein CVS42_00335 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_00335 PF06580 CVS42_00335 CVS42_00335 PF07694 5TMR of 5TMR-LYT CVS42_00340 PF00072 Response regulator receiver domain CVS42_00340 PF04397 LytTr DNA-binding domain CVS42_00345 PF07690 Major Facilitator Superfamily CVS42_00350 PF02222 ATP-grasp domain CVS42_00355 PF00731 AIR carboxylase CVS42_00365 PF05982 CVS42_00365 CVS42_00370 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_00370 PF03466 LysR substrate binding domain CVS42_00375 PF00593 TonB dependent receptor CVS42_00375 PF07715 TonB-dependent Receptor Plug Domain CVS42_00380 PF01177 Asp/Glu/Hydantoin racemase CVS42_00385 PF00076 RNA recognition motif CVS42_00410 PF00899 ThiF family CVS42_00415 PF02657 Fe-S metabolism associated domain CVS42_00420 PF00266 Aminotransferase class-V CVS42_00425 PF00580 UvrD/REP helicase N-terminal domain CVS42_00425 PF13361 UvrD-like helicase C-terminal domain CVS42_00430 PF00563 EAL domain CVS42_00430 PF00990 GGDEF domain CVS42_00435 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS42_00440 PF00107 Zinc-binding dehydrogenase CVS42_00440 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_00445 PF00155 Aminotransferase class I and II CVS42_00450 PF00440 Bacterial regulatory proteins, tetR family CVS42_00450 PF13972 Bacterial transcriptional repressor CVS42_00455 PF01370 NAD dependent epimerase/dehydratase family CVS42_00460 PF01522 Polysaccharide deacetylase CVS42_00460 PF13439 Glycosyltransferase Family 4 CVS42_00465 PF04932 CVS42_00465 CVS42_00470 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CVS42_00480 PF00534 Glycosyl transferases group 1 CVS42_00480 PF13439 Glycosyltransferase Family 4 CVS42_00495 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_00500 PF02311 AraC-like ligand binding domain CVS42_00500 PF12833 Helix-turn-helix domain CVS42_00505 PF01810 CVS42_00505 CVS42_00510 PF13416 Bacterial extracellular solute-binding protein CVS42_00515 PF11769 CVS42_00515 CVS42_00520 PF00031 Cystatin domain CVS42_00525 PF07883 Cupin domain CVS42_00530 PF09351 Domain of unknown function (DUF1993) CVS42_00535 PF14001 CVS42_00535 CVS42_00540 PF12996 CVS42_00540 CVS42_00540 PF13524 Glycosyl transferases group 1 CVS42_00555 PF11008 CVS42_00555 CVS42_00560 PF01797 Transposase IS200 like CVS42_00565 PF00580 UvrD/REP helicase N-terminal domain CVS42_00565 PF13361 UvrD-like helicase C-terminal domain CVS42_00570 PF02608 Basic membrane protein CVS42_00575 PF00005 ABC transporter CVS42_00580 PF02653 CVS42_00580 CVS42_00585 PF02653 CVS42_00585 CVS42_00595 PF00149 Calcineurin-like phosphoesterase CVS42_00595 PF02872 5'-nucleotidase, C-terminal domain CVS42_00605 PF00571 CBS domain CVS42_00605 PF01769 Divalent cation transporter CVS42_00605 PF03448 MgtE intracellular N domain CVS42_00610 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS42_00610 PF10414 Sirohaem synthase dimerisation region CVS42_00610 PF13241 Putative NAD(P)-binding CVS42_00610 PF14824 Sirohaem biosynthesis protein central CVS42_00615 PF01226 Formate/nitrite transporter CVS42_00620 PF13806 Rieske-like [2Fe-2S] domain CVS42_00625 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS42_00625 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS42_00625 PF04324 BFD-like [2Fe-2S] binding domain CVS42_00625 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_00630 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_00630 PF07724 AAA domain (Cdc48 subfamily) CVS42_00630 PF10431 C-terminal, D2-small domain, of ClpB protein CVS42_00635 PF00227 Proteasome subunit CVS42_00640 PF08410 CVS42_00640 CVS42_00645 PF05036 Sporulation related domain CVS42_00650 PF00750 tRNA synthetases class I (R) CVS42_00650 PF03485 Arginyl tRNA synthetase N terminal domain CVS42_00650 PF05746 DALR anticodon binding domain CVS42_00655 PF02190 ATP-dependent protease La (LON) domain CVS42_00660 PF04542 Sigma-70 region 2 CVS42_00660 PF04545 Sigma-70, region 4 CVS42_00665 PF12973 ChrR Cupin-like domain CVS42_00670 PF02673 CVS42_00670 CVS42_00675 PF01263 Aldose 1-epimerase CVS42_00680 PF00288 GHMP kinases N terminal domain CVS42_00680 PF08544 GHMP kinases C terminal CVS42_00680 PF10509 Galactokinase galactose-binding signature CVS42_00685 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CVS42_00685 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CVS42_00690 PF16363 CVS42_00690 CVS42_00695 PF00356 Bacterial regulatory proteins, lacI family CVS42_00695 PF13377 Periplasmic binding protein-like domain CVS42_00700 PF00703 Glycosyl hydrolases family 2 CVS42_00700 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CVS42_00700 PF02837 Glycosyl hydrolases family 2, sugar binding domain CVS42_00700 PF02929 Beta galactosidase small chain CVS42_00700 PF16353 CVS42_00700 CVS42_00705 PF13407 Periplasmic binding protein domain CVS42_00710 PF00005 ABC transporter CVS42_00715 PF02653 CVS42_00715 CVS42_00720 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_00725 PF05958 tRNA (Uracil-5-)-methyltransferase CVS42_00735 PF01923 Cobalamin adenosyltransferase CVS42_00740 PF00128 Alpha amylase, catalytic domain CVS42_00740 PF16657 CVS42_00740 CVS42_00745 PF08668 HDOD domain CVS42_00750 PF03724 META domain CVS42_00755 PF00012 Hsp70 protein CVS42_00760 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS42_00760 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS42_00765 PF05981 CVS42_00765 CVS42_00770 PF06127 CVS42_00770 CVS42_00780 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVS42_00785 PF00120 Glutamine synthetase, catalytic domain CVS42_00790 PF00202 Aminotransferase class-III CVS42_00795 PF13416 Bacterial extracellular solute-binding protein CVS42_00800 PF13416 Bacterial extracellular solute-binding protein CVS42_00805 PF00005 ABC transporter CVS42_00805 PF08402 TOBE domain CVS42_00810 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_00815 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_00820 PF03473 MOSC domain CVS42_00820 PF03475 3-alpha domain CVS42_00835 PF03061 Thioesterase superfamily CVS42_00840 PF00270 DEAD/DEAH box helicase CVS42_00840 PF00271 Helicase conserved C-terminal domain CVS42_00840 PF00570 HRDC domain CVS42_00840 PF09382 RQC domain CVS42_00840 PF16124 CVS42_00840 CVS42_00845 PF00034 Cytochrome c CVS42_00850 PF02696 CVS42_00850 CVS42_00855 PF12305 CVS42_00855 CVS42_00860 PF02592 CVS42_00860 CVS42_00865 PF03737 Demethylmenaquinone methyltransferase CVS42_00870 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_00875 PF06206 CpeT/CpcT family (DUF1001) CVS42_00885 PF01197 Ribosomal protein L31 CVS42_00890 PF00270 DEAD/DEAH box helicase CVS42_00890 PF00271 Helicase conserved C-terminal domain CVS42_00900 PF11066 CVS42_00900 CVS42_00900 PF13460 NADH(P)-binding CVS42_00905 PF03222 Tryptophan/tyrosine permease family CVS42_00910 PF00390 Malic enzyme, N-terminal domain CVS42_00910 PF03949 Malic enzyme, NAD binding domain CVS42_00915 PF03631 CVS42_00915 CVS42_00920 PF02580 D-Tyr-tRNA(Tyr) deacylase CVS42_00925 PF13649 Methyltransferase domain CVS42_00930 PF00583 Acetyltransferase (GNAT) family CVS42_00930 PF09500 Putative thioesterase (yiiD_Cterm) CVS42_00935 PF13502 CVS42_00935 CVS42_00940 PF00270 DEAD/DEAH box helicase CVS42_00940 PF00271 Helicase conserved C-terminal domain CVS42_00940 PF17191 CVS42_00940 CVS42_00945 PF13091 PLD-like domain CVS42_00950 PF02447 CVS42_00950 CVS42_00955 PF01202 Shikimate kinase CVS42_00960 PF00920 Dehydratase family CVS42_00965 PF01081 KDPG and KHG aldolase CVS42_00970 PF12833 Helix-turn-helix domain CVS42_00975 PF12680 SnoaL-like domain CVS42_00980 PF00356 Bacterial regulatory proteins, lacI family CVS42_00980 PF13377 Periplasmic binding protein-like domain CVS42_00985 PF00805 Pentapeptide repeats (8 copies) CVS42_00985 PF13599 Pentapeptide repeats (9 copies) CVS42_00990 PF01551 Peptidase family M23 CVS42_00995 PF01676 Metalloenzyme superfamily CVS42_00995 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CVS42_01000 PF00581 Rhodanese-like domain CVS42_01005 PF02556 Preprotein translocase subunit SecB CVS42_01010 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CVS42_01010 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CVS42_01015 PF01106 NifU-like domain CVS42_01015 PF01521 Iron-sulphur cluster biosynthesis CVS42_01025 PF00561 alpha/beta hydrolase fold CVS42_01035 PF12118 CVS42_01035 CVS42_01045 PF00575 S1 RNA binding domain CVS42_01045 PF09371 Tex-like protein N-terminal domain CVS42_01045 PF12836 Helix-hairpin-helix motif CVS42_01045 PF16921 CVS42_01045 CVS42_01050 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS42_01050 PF03449 Transcription elongation factor, N-terminal CVS42_01055 PF00072 Response regulator receiver domain CVS42_01055 PF00486 Transcriptional regulatory protein, C terminal CVS42_01060 PF00512 His Kinase A (phospho-acceptor) domain CVS42_01060 PF00672 HAMP domain CVS42_01060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_01065 PF00892 EamA-like transporter family CVS42_01070 PF00338 Ribosomal protein S10p/S20e CVS42_01075 PF00297 Ribosomal protein L3 CVS42_01080 PF00573 Ribosomal protein L4/L1 family CVS42_01085 PF00276 Ribosomal protein L23 CVS42_01090 PF00181 Ribosomal Proteins L2, RNA binding domain CVS42_01090 PF03947 Ribosomal Proteins L2, C-terminal domain CVS42_01095 PF00203 Ribosomal protein S19 CVS42_01100 PF00237 Ribosomal protein L22p/L17e CVS42_01105 PF00189 Ribosomal protein S3, C-terminal domain CVS42_01105 PF07650 KH domain CVS42_01110 PF00252 Ribosomal protein L16p/L10e CVS42_01115 PF00831 Ribosomal L29 protein CVS42_01120 PF00366 Ribosomal protein S17 CVS42_01125 PF00238 Ribosomal protein L14p/L23e CVS42_01130 PF17136 CVS42_01130 CVS42_01135 PF00281 Ribosomal protein L5 CVS42_01135 PF00673 ribosomal L5P family C-terminus CVS42_01140 PF00253 Ribosomal protein S14p/S29e CVS42_01145 PF00410 Ribosomal protein S8 CVS42_01150 PF00347 Ribosomal protein L6 CVS42_01155 PF00861 Ribosomal L18p/L5e family CVS42_01160 PF00333 Ribosomal protein S5, N-terminal domain CVS42_01160 PF03719 Ribosomal protein S5, C-terminal domain CVS42_01165 PF00327 Ribosomal protein L30p/L7e CVS42_01170 PF00828 Ribosomal protein L18e/L15 CVS42_01175 PF00344 SecY translocase CVS42_01180 PF00444 Ribosomal protein L36 CVS42_01185 PF00416 Ribosomal protein S13/S18 CVS42_01190 PF00411 Ribosomal protein S11 CVS42_01195 PF00163 Ribosomal protein S4/S9 N-terminal domain CVS42_01195 PF01479 S4 domain CVS42_01200 PF01000 RNA polymerase Rpb3/RpoA insert domain CVS42_01200 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CVS42_01200 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CVS42_01205 PF01196 Ribosomal protein L17 CVS42_01240 PF00593 TonB dependent receptor CVS42_01240 PF07715 TonB-dependent Receptor Plug Domain CVS42_01245 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_01245 PF00990 GGDEF domain CVS42_01250 PF00512 His Kinase A (phospho-acceptor) domain CVS42_01250 PF00672 HAMP domain CVS42_01250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_01255 PF00072 Response regulator receiver domain CVS42_01255 PF00486 Transcriptional regulatory protein, C terminal CVS42_01265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_01265 PF03466 LysR substrate binding domain CVS42_01275 PF02678 Pirin CVS42_01280 PF07681 CVS42_01280 CVS42_01285 PF04257 Exodeoxyribonuclease V, gamma subunit CVS42_01290 PF00580 UvrD/REP helicase N-terminal domain CVS42_01290 PF12705 PD-(D/E)XK nuclease superfamily CVS42_01290 PF13361 UvrD-like helicase C-terminal domain CVS42_01295 PF13538 UvrD-like helicase C-terminal domain CVS42_01295 PF13604 AAA domain CVS42_01305 PF00583 Acetyltransferase (GNAT) family CVS42_01310 PF00990 GGDEF domain CVS42_01310 PF08447 PAS fold CVS42_01315 PF13505 Outer membrane protein beta-barrel domain CVS42_01320 PF13443 Cro/C1-type HTH DNA-binding domain CVS42_01325 PF00392 Bacterial regulatory proteins, gntR family CVS42_01325 PF07702 UTRA domain CVS42_01330 PF13343 Bacterial extracellular solute-binding protein CVS42_01335 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase CVS42_01340 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_01345 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_01350 PF00005 ABC transporter CVS42_01350 PF08402 TOBE domain CVS42_01355 PF12710 haloacid dehalogenase-like hydrolase CVS42_01360 PF00990 GGDEF domain CVS42_01360 PF02743 Cache domain CVS42_01365 PF09980 CVS42_01365 CVS42_01375 PF00043 Glutathione S-transferase, C-terminal domain CVS42_01375 PF02798 Glutathione S-transferase, N-terminal domain CVS42_01380 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS42_01390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_01390 PF12793 CVS42_01390 CVS42_01395 PF00141 Peroxidase CVS42_01400 PF13279 Thioesterase-like superfamily CVS42_01410 PF03280 Proteobacterial lipase chaperone protein CVS42_01415 PF00561 alpha/beta hydrolase fold CVS42_01420 PF00579 tRNA synthetases class I (W and Y) CVS42_01425 PF00196 Bacterial regulatory proteins, luxR family CVS42_01430 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_01440 PF07383 CVS42_01440 CVS42_01445 PF00199 Catalase CVS42_01445 PF06628 Catalase-related immune-responsive CVS42_01450 PF00583 Acetyltransferase (GNAT) family CVS42_01455 PF06445 GyrI-like small molecule binding domain CVS42_01455 PF12833 Helix-turn-helix domain CVS42_01460 PF14163 CVS42_01460 CVS42_01465 PF01699 Sodium/calcium exchanger protein CVS42_01470 PF00133 tRNA synthetases class I (I, L, M and V) CVS42_01470 PF08264 Anticodon-binding domain of tRNA CVS42_01470 PF10458 Valyl tRNA synthetase tRNA binding arm CVS42_01475 PF04364 DNA polymerase III chi subunit, HolC CVS42_01480 PF00883 Cytosol aminopeptidase family, catalytic domain CVS42_01480 PF02789 Cytosol aminopeptidase family, N-terminal domain CVS42_01485 PF03739 CVS42_01485 CVS42_01490 PF03739 CVS42_01490 CVS42_01495 PF06271 CVS42_01495 CVS42_01530 PF12571 CVS42_01530 CVS42_01540 PF04865 CVS42_01540 CVS42_01545 PF10761 CVS42_01545 CVS42_01550 PF10145 CVS42_01550 CVS42_01555 PF10963 CVS42_01555 CVS42_01565 PF00959 Phage lysozyme CVS42_01570 PF05106 CVS42_01570 CVS42_01575 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVS42_01580 PF10772 CVS42_01580 CVS42_01600 PF05944 CVS42_01600 CVS42_01605 PF05125 CVS42_01605 CVS42_01610 PF05929 CVS42_01610 CVS42_01615 PF03237 Terminase-like family CVS42_01615 PF06056 Putative ATPase subunit of terminase (gpP-like) CVS42_01615 PF17289 CVS42_01615 CVS42_01620 PF04860 Phage portal protein CVS42_01625 PF04606 CVS42_01625 CVS42_01635 PF04606 CVS42_01635 CVS42_01645 PF05840 CVS42_01645 CVS42_01660 PF01381 Helix-turn-helix CVS42_01685 PF14549 DNA-binding transcriptional regulator Cro CVS42_01690 PF00717 Peptidase S24-like CVS42_01690 PF01381 Helix-turn-helix CVS42_01705 PF00145 C-5 cytosine-specific DNA methylase CVS42_01710 PF00589 Phage integrase family CVS42_01715 PF00589 Phage integrase family CVS42_01725 PF13683 CVS42_01725 CVS42_01730 PF00990 GGDEF domain CVS42_01730 PF01590 GAF domain CVS42_01735 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_01735 PF00672 HAMP domain CVS42_01735 PF02743 Cache domain CVS42_01740 PF01734 Patatin-like phospholipase CVS42_01745 PF00330 Aconitase family (aconitate hydratase) CVS42_01745 PF06434 Aconitate hydratase 2 N-terminus CVS42_01745 PF11791 Aconitate B N-terminal domain CVS42_01750 PF00563 EAL domain CVS42_01750 PF12792 CVS42_01750 CVS42_01755 PF01565 FAD binding domain CVS42_01755 PF04030 D-arabinono-1,4-lactone oxidase CVS42_01760 PF02492 CobW/HypB/UreG, nucleotide-binding domain CVS42_01760 PF07683 Cobalamin synthesis protein cobW C-terminal domain CVS42_01765 PF00873 AcrB/AcrD/AcrF family CVS42_01770 PF16576 CVS42_01770 CVS42_01775 PF00440 Bacterial regulatory proteins, tetR family CVS42_01775 PF14246 AefR-like transcriptional repressor, C-terminal region CVS42_01780 PF07690 Major Facilitator Superfamily CVS42_01785 PF04073 Aminoacyl-tRNA editing domain CVS42_01790 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVS42_01795 PF02152 Dihydroneopterin aldolase CVS42_01800 PF02660 CVS42_01800 CVS42_01835 PF00206 Lyase CVS42_01835 PF14698 Argininosuccinate lyase C-terminal CVS42_01840 PF00764 Arginosuccinate synthase CVS42_01845 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS42_01845 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS42_01850 PF00696 Amino acid kinase family CVS42_01855 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS42_01855 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS42_01860 PF01546 Peptidase family M20/M25/M40 CVS42_01860 PF07687 Peptidase dimerisation domain CVS42_01865 PF00311 Phosphoenolpyruvate carboxylase CVS42_01880 PF00589 Phage integrase family CVS42_01880 PF13356 Domain of unknown function (DUF4102) CVS42_01885 PF04363 CVS42_01885 CVS42_01890 PF00912 Transglycosylase CVS42_01895 PF08282 haloacid dehalogenase-like hydrolase CVS42_01900 PF03961 CVS42_01900 CVS42_01905 PF00994 Probable molybdopterin binding domain CVS42_01910 PF11871 CVS42_01910 CVS42_01910 PF13487 HD domain CVS42_01915 PF04204 Homoserine O-succinyltransferase CVS42_01920 PF00782 Dual specificity phosphatase, catalytic domain CVS42_01925 PF01037 AsnC family CVS42_01925 PF13412 Winged helix-turn-helix DNA-binding CVS42_01930 PF00884 Sulfatase CVS42_01935 PF10387 Protein of unknown function (DUF2442) CVS42_01940 PF00593 TonB dependent receptor CVS42_01940 PF07715 TonB-dependent Receptor Plug Domain CVS42_01945 PF00128 Alpha amylase, catalytic domain CVS42_01950 PF14401 CVS42_01950 CVS42_01955 PF00583 Acetyltransferase (GNAT) family CVS42_01960 PF12292 CVS42_01960 CVS42_01965 PF00106 short chain dehydrogenase CVS42_01970 PF03577 CVS42_01970 CVS42_01980 PF00465 Iron-containing alcohol dehydrogenase CVS42_01985 PF02142 MGS-like domain CVS42_01990 PF05960 Bacterial protein of unknown function (DUF885) CVS42_01995 PF00210 Ferritin-like domain CVS42_02000 PF04324 BFD-like [2Fe-2S] binding domain CVS42_02005 PF10115 CVS42_02005 CVS42_02010 PF05127 Helicase CVS42_02010 PF08351 Domain of unknown function (DUF1726) CVS42_02010 PF13718 GNAT acetyltransferase 2 CVS42_02015 PF00106 short chain dehydrogenase CVS42_02020 PF00072 Response regulator receiver domain CVS42_02020 PF01584 CheW-like domain CVS42_02030 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CVS42_02030 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CVS42_02035 PF02698 DUF218 domain CVS42_02040 PF01752 Collagenase CVS42_02045 PF00501 AMP-binding enzyme CVS42_02045 PF13193 AMP-binding enzyme C-terminal domain CVS42_02050 PF13378 Enolase C-terminal domain-like CVS42_02055 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_02060 PF12697 Alpha/beta hydrolase family CVS42_02065 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_02065 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS42_02065 PF16582 CVS42_02065 CVS42_02070 PF00425 chorismate binding enzyme CVS42_02075 PF01040 UbiA prenyltransferase family CVS42_02080 PF03413 Peptidase propeptide and YPEB domain CVS42_02080 PF03929 CVS42_02080 CVS42_02090 PF03692 CVS42_02090 CVS42_02095 PF00270 DEAD/DEAH box helicase CVS42_02095 PF00271 Helicase conserved C-terminal domain CVS42_02095 PF03880 DbpA RNA binding domain CVS42_02100 PF01773 Na+ dependent nucleoside transporter N-terminus CVS42_02100 PF07662 Na+ dependent nucleoside transporter C-terminus CVS42_02100 PF07670 Nucleoside recognition CVS42_02105 PF04307 CVS42_02105 CVS42_02110 PF02639 CVS42_02110 CVS42_02115 PF01544 CorA-like Mg2+ transporter protein CVS42_02120 PF00924 Mechanosensitive ion channel CVS42_02130 PF00226 DnaJ domain CVS42_02130 PF12339 CVS42_02130 CVS42_02135 PF05068 Mannitol repressor CVS42_02140 PF01232 Mannitol dehydrogenase Rossmann domain CVS42_02140 PF08125 Mannitol dehydrogenase C-terminal domain CVS42_02145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_02145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS42_02145 PF02378 Phosphotransferase system, EIIC CVS42_02150 PF03279 CVS42_02150 CVS42_02155 PF00294 pfkB family carbohydrate kinase CVS42_02155 PF01467 Cytidylyltransferase CVS42_02160 PF02321 Outer membrane efflux protein CVS42_02165 PF00293 NUDIX domain CVS42_02170 PF06853 CVS42_02170 CVS42_02175 PF00149 Calcineurin-like phosphoesterase CVS42_02180 PF05728 Uncharacterised protein family (UPF0227) CVS42_02185 PF00204 DNA gyrase B CVS42_02185 PF00986 DNA gyrase B subunit, carboxyl terminus CVS42_02185 PF01751 Toprim domain CVS42_02185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_02190 PF00521 DNA gyrase/topoisomerase IV, subunit A CVS42_02190 PF03989 DNA gyrase C-terminal domain, beta-propeller CVS42_02200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_02200 PF03466 LysR substrate binding domain CVS42_02205 PF07690 Major Facilitator Superfamily CVS42_02210 PF00854 POT family CVS42_02230 PF00226 DnaJ domain CVS42_02235 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_02240 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CVS42_02245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_02245 PF03466 LysR substrate binding domain CVS42_02250 PF08534 Redoxin CVS42_02255 PF13462 Thioredoxin CVS42_02260 PF02683 CVS42_02260 CVS42_02260 PF11412 Disulphide bond corrector protein DsbC CVS42_02260 PF13899 Thioredoxin-like CVS42_02270 PF01553 Acyltransferase CVS42_02275 PF04012 CVS42_02275 CVS42_02280 PF04024 CVS42_02280 CVS42_02285 PF09583 CVS42_02285 CVS42_02290 PF01541 GIY-YIG catalytic domain CVS42_02295 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_02300 PF00892 EamA-like transporter family CVS42_02305 PF03167 Uracil DNA glycosylase superfamily CVS42_02310 PF00892 EamA-like transporter family CVS42_02315 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_02315 PF03466 LysR substrate binding domain CVS42_02320 PF00950 CVS42_02320 CVS42_02325 PF00005 ABC transporter CVS42_02330 PF01297 Periplasmic solute binding protein family CVS42_02335 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP CVS42_02340 PF16868 CVS42_02340 CVS42_02345 PF16448 CVS42_02345 CVS42_02350 PF01551 Peptidase family M23 CVS42_02350 PF04225 Opacity-associated protein A LysM-like domain CVS42_02355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS42_02360 PF04222 Protein of unknown function (DUF416) CVS42_02365 PF01047 MarR family CVS42_02375 PF02028 BCCT family transporter CVS42_02380 PF01743 Poly A polymerase head domain CVS42_02380 PF01966 HD domain CVS42_02380 PF12627 Probable RNA and SrmB- binding site of polymerase A CVS42_02385 PF00633 Helix-hairpin-helix motif CVS42_02385 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS42_02385 PF14815 NUDIX domain CVS42_02390 PF04362 Bacterial Fe(2+) trafficking CVS42_02395 PF01464 Transglycosylase SLT domain CVS42_02395 PF11873 Domain of unknown function (DUF3393) CVS42_02400 PF04076 Bacterial OB fold (BOF) protein CVS42_02405 PF00657 GDSL-like Lipase/Acylhydrolase CVS42_02410 PF00691 OmpA family CVS42_02410 PF01389 OmpA-like transmembrane domain CVS42_02415 PF00990 GGDEF domain CVS42_02420 PF00575 S1 RNA binding domain CVS42_02420 PF00773 RNB domain CVS42_02420 PF08206 Ribonuclease B OB domain CVS42_02420 PF08461 Ribonuclease R winged-helix domain CVS42_02430 PF05591 CVS42_02430 CVS42_02435 PF05943 CVS42_02435 CVS42_02440 PF04965 Gene 25-like lysozyme CVS42_02445 PF05947 CVS42_02445 CVS42_02450 PF06996 CVS42_02450 CVS42_02455 PF00498 FHA domain CVS42_02460 PF12790 Type VI secretion lipoprotein CVS42_02465 PF05936 CVS42_02465 CVS42_02470 PF09850 Uncharacterized protein conserved in bacteria (DUF2077) CVS42_02475 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_02475 PF07724 AAA domain (Cdc48 subfamily) CVS42_02475 PF10431 C-terminal, D2-small domain, of ClpB protein CVS42_02480 PF00158 Sigma-54 interaction domain CVS42_02485 PF11319 CVS42_02485 CVS42_02490 PF06812 CVS42_02490 CVS42_02490 PF16989 CVS42_02490 CVS42_02495 PF06744 CVS42_02495 CVS42_02495 PF06761 CVS42_02495 CVS42_02495 PF14331 CVS42_02495 CVS42_02500 PF06812 CVS42_02500 CVS42_02500 PF12486 CVS42_02500 CVS42_02505 PF05488 PAAR motif CVS42_02510 PF05954 Phage late control gene D protein (GPD) CVS42_02515 PF13503 CVS42_02515 CVS42_02530 PF08238 Sel1 repeat CVS42_02550 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CVS42_02550 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CVS42_02555 PF07690 Major Facilitator Superfamily CVS42_02560 PF01725 Ham1 family CVS42_02565 PF04055 Radical SAM superfamily CVS42_02565 PF06969 HemN C-terminal domain CVS42_02575 PF01548 CVS42_02575 CVS42_02575 PF02371 CVS42_02575 CVS42_02590 PF00588 SpoU rRNA Methylase family CVS42_02590 PF08032 RNA 2'-O ribose methyltransferase substrate binding CVS42_02595 PF00027 Cyclic nucleotide-binding domain CVS42_02600 PF13673 Acetyltransferase (GNAT) domain CVS42_02605 PF00270 DEAD/DEAH box helicase CVS42_02605 PF00271 Helicase conserved C-terminal domain CVS42_02610 PF05175 Methyltransferase small domain CVS42_02615 PF05525 CVS42_02615 CVS42_02620 PF05525 CVS42_02620 CVS42_02630 PF13690 Chemotaxis phosphatase CheX CVS42_02635 PF01475 Ferric uptake regulator family CVS42_02640 PF01207 Dihydrouridine synthase (Dus) CVS42_02675 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_02675 PF08447 PAS fold CVS42_02685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_02690 PF08857 Putative ParB-like nuclease CVS42_02695 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_02700 PF10952 CVS42_02700 CVS42_02705 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_02710 PF04314 Protein of unknown function (DUF461) CVS42_02720 PF00106 short chain dehydrogenase CVS42_02725 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS42_02725 PF03129 Anticodon binding domain CVS42_02725 PF04073 Aminoacyl-tRNA editing domain CVS42_02730 PF01938 TRAM domain CVS42_02730 PF05958 tRNA (Uracil-5-)-methyltransferase CVS42_02735 PF03886 Protein of unknown function (DUF330) CVS42_02740 PF02470 CVS42_02740 CVS42_02745 PF04403 CVS42_02745 CVS42_02750 PF17209 CVS42_02750 CVS42_02755 PF13419 Haloacid dehalogenase-like hydrolase CVS42_02760 PF08668 HDOD domain CVS42_02765 PF00990 GGDEF domain CVS42_02770 PF00575 S1 RNA binding domain CVS42_02770 PF00773 RNB domain CVS42_02770 PF08206 Ribonuclease B OB domain CVS42_02775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_02775 PF03466 LysR substrate binding domain CVS42_02780 PF00765 Autoinducer synthetase CVS42_02785 PF00196 Bacterial regulatory proteins, luxR family CVS42_02785 PF03472 Autoinducer binding domain CVS42_02790 PF01810 CVS42_02790 CVS42_02795 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_02795 PF00672 HAMP domain CVS42_02800 PF01330 RuvA N terminal domain CVS42_02800 PF07499 RuvA, C-terminal domain CVS42_02800 PF14520 Helix-hairpin-helix domain CVS42_02805 PF05491 Holliday junction DNA helicase ruvB C-terminus CVS42_02805 PF05496 Holliday junction DNA helicase ruvB N-terminus CVS42_02810 PF01654 CVS42_02810 CVS42_02815 PF02322 CVS42_02815 CVS42_02820 PF08173 CVS42_02820 CVS42_02825 PF09600 CVS42_02825 CVS42_02830 PF03061 Thioesterase superfamily CVS42_02835 PF01618 CVS42_02835 CVS42_02840 PF02472 Biopolymer transport protein ExbD/TolR CVS42_02845 PF06519 TolA C-terminal CVS42_02850 PF04052 TolB amino-terminal domain CVS42_02850 PF07676 WD40-like Beta Propeller Repeat CVS42_02855 PF00691 OmpA family CVS42_02860 PF13174 Tetratricopeptide repeat CVS42_02860 PF13432 Tetratricopeptide repeat CVS42_02860 PF16331 CVS42_02860 CVS42_02895 PF00209 Sodium:neurotransmitter symporter family CVS42_02900 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_02905 PF00209 Sodium:neurotransmitter symporter family CVS42_02910 PF03171 2OG-Fe(II) oxygenase superfamily CVS42_02910 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CVS42_02915 PF10973 CVS42_02915 CVS42_02920 PF08282 haloacid dehalogenase-like hydrolase CVS42_02925 PF07690 Major Facilitator Superfamily CVS42_02935 PF01037 AsnC family CVS42_02935 PF13412 Winged helix-turn-helix DNA-binding CVS42_02950 PF00293 NUDIX domain CVS42_02955 PF02417 CVS42_02955 CVS42_02960 PF01641 SelR domain CVS42_02965 PF00128 Alpha amylase, catalytic domain CVS42_02965 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS42_02970 PF00128 Alpha amylase, catalytic domain CVS42_02970 PF02806 Alpha amylase, C-terminal all-beta domain CVS42_02970 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS42_02975 PF02446 4-alpha-glucanotransferase CVS42_02985 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_02985 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS42_02990 PF01263 Aldose 1-epimerase CVS42_02995 PF02445 Quinolinate synthetase A protein CVS42_03000 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_03000 PF02743 Cache domain CVS42_03005 PF01957 NfeD-like C-terminal, partner-binding CVS42_03010 PF01145 SPFH domain / Band 7 family CVS42_03015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS42_03015 PF10414 Sirohaem synthase dimerisation region CVS42_03015 PF13241 Putative NAD(P)-binding CVS42_03015 PF14824 Sirohaem biosynthesis protein central CVS42_03020 PF01507 Phosphoadenosine phosphosulfate reductase family CVS42_03025 PF00009 Elongation factor Tu GTP binding domain CVS42_03030 PF02080 TrkA-C domain CVS42_03030 PF03600 Citrate transporter CVS42_03035 PF01583 Adenylylsulphate kinase CVS42_03050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_03050 PF08447 PAS fold CVS42_03055 PF10987 CVS42_03055 CVS42_03060 PF11736 Protein of unknown function (DUF3299) CVS42_03065 PF02687 CVS42_03065 CVS42_03065 PF12704 MacB-like periplasmic core domain CVS42_03070 PF00005 ABC transporter CVS42_03075 PF10986 CVS42_03075 CVS42_03080 PF10795 CVS42_03080 CVS42_03085 PF09695 CVS42_03085 CVS42_03100 PF00719 Inorganic pyrophosphatase CVS42_03105 PF00072 Response regulator receiver domain CVS42_03105 PF01966 HD domain CVS42_03105 PF11849 CVS42_03105 CVS42_03110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_03110 PF03466 LysR substrate binding domain CVS42_03115 PF00893 Small Multidrug Resistance protein CVS42_03120 PF00893 Small Multidrug Resistance protein CVS42_03125 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_03130 PF00905 Penicillin binding protein transpeptidase domain CVS42_03130 PF00912 Transglycosylase CVS42_03130 PF14814 Bifunctional transglycosylase second domain CVS42_03135 PF00270 DEAD/DEAH box helicase CVS42_03135 PF00271 Helicase conserved C-terminal domain CVS42_03135 PF04408 Helicase associated domain (HA2) CVS42_03135 PF08482 CVS42_03135 CVS42_03140 PF02834 LigT like Phosphoesterase CVS42_03145 PF03749 Sugar fermentation stimulation protein CVS42_03150 PF01258 Prokaryotic dksA/traR C4-type zinc finger CVS42_03155 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS42_03160 PF01743 Poly A polymerase head domain CVS42_03160 PF12626 Polymerase A arginine-rich C-terminus CVS42_03160 PF12627 Probable RNA and SrmB- binding site of polymerase A CVS42_03165 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVS42_03170 PF02548 Ketopantoate hydroxymethyltransferase CVS42_03175 PF02569 Pantoate-beta-alanine ligase CVS42_03180 PF03992 Antibiotic biosynthesis monooxygenase CVS42_03185 PF00375 Sodium:dicarboxylate symporter family CVS42_03190 PF00581 Rhodanese-like domain CVS42_03210 PF01061 CVS42_03210 CVS42_03215 PF00005 ABC transporter CVS42_03220 PF00156 Phosphoribosyl transferase domain CVS42_03225 PF00440 Bacterial regulatory proteins, tetR family CVS42_03230 PF02441 Flavoprotein CVS42_03235 PF01225 Mur ligase family, catalytic domain CVS42_03235 PF02875 Mur ligase family, glutamate ligase domain CVS42_03235 PF08245 Mur ligase middle domain CVS42_03240 PF01569 PAP2 superfamily CVS42_03245 PF16363 CVS42_03245 CVS42_03250 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_03250 PF00175 Oxidoreductase NAD-binding domain CVS42_03250 PF00970 Oxidoreductase FAD-binding domain CVS42_03255 PF03063 Prismane/CO dehydrogenase family CVS42_03260 PF00210 Ferritin-like domain CVS42_03265 PF01471 Putative peptidoglycan binding domain CVS42_03265 PF01510 N-acetylmuramoyl-L-alanine amidase CVS42_03270 PF07308 CVS42_03270 CVS42_03275 PF00072 Response regulator receiver domain CVS42_03275 PF00512 His Kinase A (phospho-acceptor) domain CVS42_03275 PF01627 Hpt domain CVS42_03275 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_03275 PF09984 CVS42_03275 CVS42_03280 PF01938 TRAM domain CVS42_03280 PF05958 tRNA (Uracil-5-)-methyltransferase CVS42_03285 PF02824 TGS domain CVS42_03285 PF04607 Region found in RelA / SpoT proteins CVS42_03285 PF13291 ACT domain CVS42_03285 PF13328 HD domain CVS42_03290 PF03819 MazG nucleotide pyrophosphohydrolase domain CVS42_03295 PF00117 Glutamine amidotransferase class-I CVS42_03295 PF06418 CTP synthase N-terminus CVS42_03300 PF00113 Enolase, C-terminal TIM barrel domain CVS42_03300 PF03952 Enolase, N-terminal domain CVS42_03305 PF13302 Acetyltransferase (GNAT) domain CVS42_03310 PF12686 CVS42_03310 CVS42_03320 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_03325 PF13650 Aspartyl protease CVS42_03330 PF07007 Protein of unknown function (DUF1311) CVS42_03330 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CVS42_03335 PF09834 CVS42_03335 CVS42_03345 PF12762 CVS42_03345 CVS42_03345 PF13384 Homeodomain-like domain CVS42_03350 PF04378 Ribosomal RNA small subunit methyltransferase D, RsmJ CVS42_03355 PF09523 CVS42_03355 CVS42_03360 PF00005 ABC transporter CVS42_03360 PF12848 ABC transporter CVS42_03360 PF16326 CVS42_03360 CVS42_03365 PF00571 CBS domain CVS42_03380 PF00155 Aminotransferase class I and II CVS42_03380 PF00392 Bacterial regulatory proteins, gntR family CVS42_03385 PF01810 CVS42_03385 CVS42_03390 PF01810 CVS42_03390 CVS42_03395 PF01177 Asp/Glu/Hydantoin racemase CVS42_03400 PF01553 Acyltransferase CVS42_03405 PF04074 Domain of unknown function (DUF386) CVS42_03410 PF00871 Acetokinase family CVS42_03415 PF00924 Mechanosensitive ion channel CVS42_03420 PF03734 L,D-transpeptidase catalytic domain CVS42_03425 PF04393 CVS42_03425 CVS42_03430 PF00474 Sodium:solute symporter family CVS42_03435 PF04977 Septum formation initiator CVS42_03440 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CVS42_03445 PF02542 YgbB family CVS42_03450 PF01142 tRNA pseudouridine synthase D (TruD) CVS42_03455 PF01975 Survival protein SurE CVS42_03460 PF01135 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT) CVS42_03465 PF09335 CVS42_03465 CVS42_03470 PF01476 LysM domain CVS42_03470 PF01551 Peptidase family M23 CVS42_03475 PF00140 Sigma-70 factor, region 1 CVS42_03475 PF04539 Sigma-70 region 3 CVS42_03475 PF04542 Sigma-70 region 2 CVS42_03475 PF04545 Sigma-70, region 4 CVS42_03480 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS42_03485 PF00440 Bacterial regulatory proteins, tetR family CVS42_03485 PF16925 CVS42_03485 CVS42_03490 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_03490 PF03466 LysR substrate binding domain CVS42_03495 PF04371 Porphyromonas-type peptidyl-arginine deiminase CVS42_03500 PF01425 Amidase CVS42_03530 PF00753 Metallo-beta-lactamase superfamily CVS42_03540 PF00270 DEAD/DEAH box helicase CVS42_03540 PF00271 Helicase conserved C-terminal domain CVS42_03545 PF00990 GGDEF domain CVS42_03555 PF01887 S-adenosyl-l-methionine hydroxide adenosyltransferase CVS42_03560 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_03565 PF00445 Ribonuclease T2 family CVS42_03570 PF03060 Nitronate monooxygenase CVS42_03605 PF00293 NUDIX domain CVS42_03610 PF05170 CVS42_03610 CVS42_03615 PF11884 Domain of unknown function (DUF3404) CVS42_03620 PF00072 Response regulator receiver domain CVS42_03620 PF00486 Transcriptional regulatory protein, C terminal CVS42_03625 PF11060 CVS42_03625 CVS42_03630 PF11308 CVS42_03630 CVS42_03635 PF00583 Acetyltransferase (GNAT) family CVS42_03640 PF03710 Glutamate-ammonia ligase adenylyltransferase CVS42_03640 PF08335 GlnD PII-uridylyltransferase CVS42_03645 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_03650 PF07885 Ion channel CVS42_03655 PF08239 Bacterial SH3 domain CVS42_03660 PF00171 Aldehyde dehydrogenase family CVS42_03660 PF01619 Proline dehydrogenase CVS42_03660 PF14850 DNA-binding domain of Proline dehydrogenase CVS42_03665 PF00293 NUDIX domain CVS42_03665 PF09297 NADH pyrophosphatase zinc ribbon domain CVS42_03670 PF01208 Uroporphyrinogen decarboxylase (URO-D) CVS42_03675 PF00480 ROK family CVS42_03680 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_03680 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS42_03685 PF00162 Phosphoglycerate kinase CVS42_03690 PF01116 Fructose-bisphosphate aldolase class-II CVS42_03695 PF01266 FAD dependent oxidoreductase CVS42_03710 PF00583 Acetyltransferase (GNAT) family CVS42_03715 PF02683 CVS42_03715 CVS42_03715 PF11412 Disulphide bond corrector protein DsbC CVS42_03715 PF13899 Thioredoxin-like CVS42_03720 PF03091 CutA1 divalent ion tolerance protein CVS42_03730 PF05232 CVS42_03730 CVS42_03735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_03735 PF03466 LysR substrate binding domain CVS42_03740 PF01571 Aminomethyltransferase folate-binding domain CVS42_03745 PF03937 Flavinator of succinate dehydrogenase CVS42_03750 PF07254 CVS42_03750 CVS42_03755 PF00890 FAD binding domain CVS42_03755 PF02910 Fumarate reductase flavoprotein C-term CVS42_03760 PF04542 Sigma-70 region 2 CVS42_03760 PF08281 Sigma-70, region 4 CVS42_03765 PF03872 Anti sigma-E protein RseA, N-terminal domain CVS42_03765 PF03873 Anti sigma-E protein RseA, C-terminal domain CVS42_03770 PF03888 MucB/RseB family CVS42_03770 PF17188 CVS42_03770 CVS42_03775 PF04246 CVS42_03775 CVS42_03780 PF00009 Elongation factor Tu GTP binding domain CVS42_03780 PF00679 Elongation factor G C-terminus CVS42_03780 PF03144 Elongation factor Tu domain 2 CVS42_03780 PF06421 GTP-binding protein LepA C-terminus CVS42_03785 PF00717 Peptidase S24-like CVS42_03785 PF10502 Signal peptidase, peptidase S26 CVS42_03790 PF00035 Double-stranded RNA binding motif CVS42_03790 PF14622 Ribonuclease-III-like CVS42_03795 PF01926 50S ribosome-binding GTPase CVS42_03795 PF07650 KH domain CVS42_03800 PF02565 Recombination protein O C terminal CVS42_03800 PF11967 Recombination protein O N terminal CVS42_03805 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ CVS42_03810 PF00459 Inositol monophosphatase family CVS42_03820 PF03795 YCII-related domain CVS42_03825 PF04279 CVS42_03825 CVS42_03830 PF00282 Pyridoxal-dependent decarboxylase conserved domain CVS42_03835 PF03006 CVS42_03835 CVS42_03840 PF02080 TrkA-C domain CVS42_03840 PF06826 CVS42_03840 CVS42_03845 PF03160 Calx-beta domain CVS42_03855 PF00563 EAL domain CVS42_03855 PF00990 GGDEF domain CVS42_03855 PF08448 PAS fold CVS42_03855 PF13188 PAS domain CVS42_03860 PF06877 Regulator of ribonuclease activity B CVS42_03885 PF00561 alpha/beta hydrolase fold CVS42_03890 PF00034 Cytochrome c CVS42_03890 PF03150 Di-haem cytochrome c peroxidase CVS42_03895 PF00194 Eukaryotic-type carbonic anhydrase CVS42_03900 PF04227 Indigoidine synthase A like protein CVS42_03905 PF00294 pfkB family carbohydrate kinase CVS42_03905 PF13412 Winged helix-turn-helix DNA-binding CVS42_03910 PF00588 SpoU rRNA Methylase family CVS42_03920 PF00582 Universal stress protein family CVS42_03925 PF13645 CVS42_03925 CVS42_03930 PF00267 Gram-negative porin CVS42_03935 PF13649 Methyltransferase domain CVS42_03940 PF00027 Cyclic nucleotide-binding domain CVS42_03940 PF00325 Bacterial regulatory proteins, crp family CVS42_03945 PF02566 OsmC-like protein CVS42_03950 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CVS42_03955 PF13590 Domain of unknown function (DUF4136) CVS42_03960 PF00485 Phosphoribulokinase / Uridine kinase family CVS42_03965 PF06794 Uncharacterised protein family (UPF0270) CVS42_03970 PF00990 GGDEF domain CVS42_03970 PF17178 CVS42_03970 CVS42_03975 PF00561 alpha/beta hydrolase fold CVS42_03980 PF00072 Response regulator receiver domain CVS42_03980 PF01584 CheW-like domain CVS42_03985 PF02311 AraC-like ligand binding domain CVS42_03990 PF09526 CVS42_03990 CVS42_03995 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_04000 PF04102 SlyX CVS42_04005 PF00400 WD domain, G-beta repeat CVS42_04010 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_04010 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS42_04015 PF00072 Response regulator receiver domain CVS42_04015 PF00158 Sigma-54 interaction domain CVS42_04015 PF02954 Bacterial regulatory protein, Fis family CVS42_04020 PF13181 Tetratricopeptide repeat CVS42_04030 PF11169 CVS42_04030 CVS42_04035 PF00149 Calcineurin-like phosphoesterase CVS42_04035 PF02872 5'-nucleotidase, C-terminal domain CVS42_04040 PF04280 Tim44-like domain CVS42_04050 PF00772 DnaB-like helicase N terminal domain CVS42_04050 PF03796 DnaB-like helicase C terminal domain CVS42_04055 PF00842 Alanine racemase, C-terminal domain CVS42_04055 PF01168 Alanine racemase, N-terminal domain CVS42_04060 PF01894 Uncharacterised protein family UPF0047 CVS42_04065 PF03575 Peptidase family S51 CVS42_04070 PF03372 Endonuclease/Exonuclease/phosphatase family CVS42_04075 PF00005 ABC transporter CVS42_04080 PF01032 FecCD transport family CVS42_04085 PF01497 Periplasmic binding protein CVS42_04090 PF06228 Haem utilisation ChuX/HutX CVS42_04095 PF01243 Pyridoxamine 5'-phosphate oxidase CVS42_04105 PF00857 Isochorismatase family CVS42_04110 PF04187 Protein of unknown function, DUF399 CVS42_04115 PF00593 TonB dependent receptor CVS42_04115 PF07715 TonB-dependent Receptor Plug Domain CVS42_04120 PF00196 Bacterial regulatory proteins, luxR family CVS42_04120 PF03472 Autoinducer binding domain CVS42_04130 PF05638 Protein of unknown function (DUF796) CVS42_04135 PF05954 Phage late control gene D protein (GPD) CVS42_04145 PF12832 MFS_1 like family CVS42_04155 PF13443 Cro/C1-type HTH DNA-binding domain CVS42_04160 PF11188 CVS42_04160 CVS42_04165 PF00072 Response regulator receiver domain CVS42_04165 PF00512 His Kinase A (phospho-acceptor) domain CVS42_04165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_04165 PF12860 CVS42_04165 CVS42_04170 PF00704 Glycosyl hydrolases family 18 CVS42_04170 PF08329 Chitinase A, N-terminal domain CVS42_04175 PF00990 GGDEF domain CVS42_04175 PF13185 GAF domain CVS42_04180 PF00704 Glycosyl hydrolases family 18 CVS42_04180 PF02010 CVS42_04180 CVS42_04180 PF08329 Chitinase A, N-terminal domain CVS42_04185 PF02839 Carbohydrate binding domain CVS42_04185 PF10462 Peptidase M66 CVS42_04190 PF00182 Chitinase class I CVS42_04225 PF03372 Endonuclease/Exonuclease/phosphatase family CVS42_04230 PF00704 Glycosyl hydrolases family 18 CVS42_04230 PF06483 CVS42_04230 CVS42_04235 PF00072 Response regulator receiver domain CVS42_04235 PF01584 CheW-like domain CVS42_04240 PF13472 GDSL-like Lipase/Acylhydrolase family CVS42_04245 PF00005 ABC transporter CVS42_04250 PF02687 CVS42_04250 CVS42_04255 PF01370 NAD dependent epimerase/dehydratase family CVS42_04255 PF08338 Domain of unknown function (DUF1731) CVS42_04260 PF00563 EAL domain CVS42_04260 PF12792 CVS42_04260 CVS42_04265 PF00155 Aminotransferase class I and II CVS42_04270 PF02390 Putative methyltransferase CVS42_04275 PF04320 CVS42_04275 CVS42_04280 PF04960 Glutaminase CVS42_04285 PF00581 Rhodanese-like domain CVS42_04290 PF06004 Bacterial protein of unknown function (DUF903) CVS42_04295 PF10807 CVS42_04295 CVS42_04300 PF00994 Probable molybdopterin binding domain CVS42_04305 PF11333 CVS42_04305 CVS42_04310 PF06738 CVS42_04310 CVS42_04315 PF12821 CVS42_04315 CVS42_04320 PF00186 Dihydrofolate reductase CVS42_04325 PF01507 Phosphoadenosine phosphosulfate reductase family CVS42_04330 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS42_04330 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS42_04335 PF00175 Oxidoreductase NAD-binding domain CVS42_04335 PF00258 Flavodoxin CVS42_04335 PF00667 FAD binding domain CVS42_04340 PF00152 tRNA synthetases class II (D, K and N) CVS42_04340 PF01336 OB-fold nucleic acid binding domain CVS42_04350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_04350 PF00672 HAMP domain CVS42_04350 PF02743 Cache domain CVS42_04355 PF03616 CVS42_04355 CVS42_04360 PF00710 Asparaginase CVS42_04365 PF07023 CVS42_04365 CVS42_04370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_04370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CVS42_04375 PF11207 CVS42_04375 CVS42_04380 PF00293 NUDIX domain CVS42_04385 PF04055 Radical SAM superfamily CVS42_04385 PF16881 CVS42_04385 CVS42_04390 PF03099 Biotin/lipoate A/B protein ligase family CVS42_04395 PF04359 Protein of unknown function (DUF493) CVS42_04400 PF00768 D-alanyl-D-alanine carboxypeptidase CVS42_04400 PF07943 Penicillin-binding protein 5, C-terminal domain CVS42_04405 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CVS42_04405 PF05036 Sporulation related domain CVS42_04410 PF13406 Transglycosylase SLT domain CVS42_04415 PF01098 CVS42_04415 CVS42_04420 PF00905 Penicillin binding protein transpeptidase domain CVS42_04420 PF03717 Penicillin-binding Protein dimerisation domain CVS42_04425 PF02590 Predicted SPOUT methyltransferase CVS42_04430 PF02410 Oligomerisation domain CVS42_04435 PF01467 Cytidylyltransferase CVS42_04440 PF06144 DNA polymerase III, delta subunit CVS42_04440 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CVS42_04445 PF04390 Lipopolysaccharide-assembly CVS42_04450 PF00133 tRNA synthetases class I (I, L, M and V) CVS42_04450 PF08264 Anticodon-binding domain of tRNA CVS42_04450 PF13603 Leucyl-tRNA synthetase, Domain 2 CVS42_04455 PF07295 CVS42_04455 CVS42_04460 PF01523 Putative modulator of DNA gyrase CVS42_04465 PF01523 Putative modulator of DNA gyrase CVS42_04470 PF00258 Flavodoxin CVS42_04475 PF00589 Phage integrase family CVS42_04475 PF02899 Phage integrase, N-terminal SAM-like domain CVS42_04480 PF00990 GGDEF domain CVS42_04480 PF02743 Cache domain CVS42_04485 PF01741 Large-conductance mechanosensitive channel, MscL CVS42_04490 PF10411 Disulfide bond isomerase protein N-terminus CVS42_04495 PF01368 DHH family CVS42_04495 PF02272 DHHA1 domain CVS42_04500 PF13411 MerR HTH family regulatory protein CVS42_04500 PF13649 Methyltransferase domain CVS42_04505 PF00795 Carbon-nitrogen hydrolase CVS42_04510 PF00571 CBS domain CVS42_04510 PF03471 Transporter associated domain CVS42_04515 PF02130 Uncharacterized protein family UPF0054 CVS42_04520 PF02562 PhoH-like protein CVS42_04525 PF00919 Uncharacterized protein family UPF0004 CVS42_04525 PF01938 TRAM domain CVS42_04525 PF04055 Radical SAM superfamily CVS42_04530 PF01494 FAD binding domain CVS42_04535 PF00857 Isochorismatase family CVS42_04540 PF00313 'Cold-shock' DNA-binding domain CVS42_04540 PF05901 CVS42_04540 CVS42_04545 PF00990 GGDEF domain CVS42_04550 PF00881 Nitroreductase family CVS42_04555 PF00990 GGDEF domain CVS42_04555 PF02743 Cache domain CVS42_04560 PF13488 CVS42_04560 CVS42_04565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS42_04565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS42_04570 PF12048 CVS42_04570 CVS42_04575 PF01132 Elongation factor P (EF-P) OB domain CVS42_04575 PF08207 Elongation factor P (EF-P) KOW-like domain CVS42_04575 PF09285 Elongation factor P, C-terminal CVS42_04580 PF10093 CVS42_04580 CVS42_04585 PF00478 IMP dehydrogenase / GMP reductase domain CVS42_04590 PF05618 Putative ATP-dependant zinc protease CVS42_04595 PF00512 His Kinase A (phospho-acceptor) domain CVS42_04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_04595 PF08521 CVS42_04595 CVS42_04600 PF00072 Response regulator receiver domain CVS42_04600 PF00486 Transcriptional regulatory protein, C terminal CVS42_04605 PF14559 Tetratricopeptide repeat CVS42_04610 PF00106 short chain dehydrogenase CVS42_04615 PF14518 Iron-containing redox enzyme CVS42_04620 PF00501 AMP-binding enzyme CVS42_04625 PF12261 CVS42_04625 CVS42_04630 PF13489 Methyltransferase domain CVS42_04635 PF01266 FAD dependent oxidoreductase CVS42_04640 PF13748 CVS42_04640 CVS42_04645 PF00440 Bacterial regulatory proteins, tetR family CVS42_04645 PF13977 Bacterial transcriptional repressor CVS42_04650 PF06224 CVS42_04650 CVS42_04660 PF01546 Peptidase family M20/M25/M40 CVS42_04660 PF07687 Peptidase dimerisation domain CVS42_04665 PF07670 Nucleoside recognition CVS42_04670 PF07670 Nucleoside recognition CVS42_04675 PF02313 Fumarate reductase subunit D CVS42_04680 PF02300 Fumarate reductase subunit C CVS42_04685 PF13085 2Fe-2S iron-sulfur cluster binding domain CVS42_04685 PF13183 4Fe-4S dicluster domain CVS42_04690 PF00890 FAD binding domain CVS42_04690 PF02910 Fumarate reductase flavoprotein C-term CVS42_04695 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_04695 PF00672 HAMP domain CVS42_04695 PF02743 Cache domain CVS42_04700 PF03009 Glycerophosphoryl diester phosphodiesterase family CVS42_04705 PF00924 Mechanosensitive ion channel CVS42_04705 PF12794 CVS42_04705 CVS42_04705 PF12795 CVS42_04705 CVS42_04710 PF01554 MatE CVS42_04715 PF01551 Peptidase family M23 CVS42_04725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_04725 PF03466 LysR substrate binding domain CVS42_04740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_04740 PF00672 HAMP domain CVS42_04740 PF12729 CVS42_04740 CVS42_04745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_04745 PF03466 LysR substrate binding domain CVS42_04750 PF00905 Penicillin binding protein transpeptidase domain CVS42_04750 PF00912 Transglycosylase CVS42_04750 PF17092 CVS42_04750 CVS42_04755 PF11104 Type IV pilus assembly protein PilM; CVS42_04760 PF05137 CVS42_04760 CVS42_04765 PF04350 Pilus assembly protein, PilO CVS42_04770 PF04351 Pilus assembly protein, PilP CVS42_04775 PF00263 CVS42_04775 CVS42_04775 PF03958 Bacterial type II/III secretion system short domain CVS42_04780 PF01202 Shikimate kinase CVS42_04785 PF01761 3-dehydroquinate synthase CVS42_04790 PF05036 Sporulation related domain CVS42_04795 PF02086 D12 class N6 adenine-specific DNA methyltransferase CVS42_04800 PF00834 Ribulose-phosphate 3 epimerase family CVS42_04805 PF13419 Haloacid dehalogenase-like hydrolase CVS42_04810 PF00579 tRNA synthetases class I (W and Y) CVS42_04820 PF00117 Glutamine amidotransferase class-I CVS42_04825 PF00202 Aminotransferase class-III CVS42_04830 PF04958 Arginine N-succinyltransferase beta subunit CVS42_04835 PF00171 Aldehyde dehydrogenase family CVS42_04840 PF07063 Domain of unknown function (DUF1338) CVS42_04850 PF13419 Haloacid dehalogenase-like hydrolase CVS42_04855 PF07690 Major Facilitator Superfamily CVS42_04860 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CVS42_04860 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CVS42_04860 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_04860 PF10371 Domain of unknown function CVS42_04860 PF12838 4Fe-4S dicluster domain CVS42_04860 PF17147 CVS42_04860 CVS42_04865 PF00128 Alpha amylase, catalytic domain CVS42_04865 PF11941 Domain of unknown function (DUF3459) CVS42_04870 PF07784 CVS42_04870 CVS42_04875 PF00012 Hsp70 protein CVS42_04885 PF06889 CVS42_04885 CVS42_04890 PF07859 alpha/beta hydrolase fold CVS42_04895 PF04266 ASCH domain CVS42_04900 PF00027 Cyclic nucleotide-binding domain CVS42_04905 PF01048 Phosphorylase superfamily CVS42_04910 PF04973 CVS42_04910 CVS42_04915 PF02080 TrkA-C domain CVS42_04915 PF03600 Citrate transporter CVS42_04960 PF01926 50S ribosome-binding GTPase CVS42_04960 PF06071 Protein of unknown function (DUF933) CVS42_04965 PF01195 Peptidyl-tRNA hydrolase CVS42_04970 PF00149 Calcineurin-like phosphoesterase CVS42_04970 PF02872 5'-nucleotidase, C-terminal domain CVS42_04975 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CVS42_04975 PF14572 Phosphoribosyl synthetase-associated domain CVS42_04985 PF00288 GHMP kinases N terminal domain CVS42_04985 PF08544 GHMP kinases C terminal CVS42_04990 PF03550 Outer membrane lipoprotein LolB CVS42_04995 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CVS42_04995 PF01488 Shikimate / quinate 5-dehydrogenase CVS42_04995 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CVS42_05000 PF00472 RF-1 domain CVS42_05000 PF03462 PCRF domain CVS42_05005 PF05175 Methyltransferase small domain CVS42_05010 PF04247 CVS42_05010 CVS42_05015 PF13369 CVS42_05015 CVS42_05015 PF13371 Tetratricopeptide repeat CVS42_05020 PF00793 DAHP synthetase I family CVS42_05025 PF01228 Glycine radical CVS42_05030 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_05035 PF03167 Uracil DNA glycosylase superfamily CVS42_05040 PF01814 Hemerythrin HHE cation binding domain CVS42_05045 PF12833 Helix-turn-helix domain CVS42_05050 PF01161 Phosphatidylethanolamine-binding protein CVS42_05055 PF00709 Adenylosuccinate synthetase CVS42_05060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_05060 PF03466 LysR substrate binding domain CVS42_05065 PF16868 CVS42_05065 CVS42_05070 PF00155 Aminotransferase class I and II CVS42_05075 PF07690 Major Facilitator Superfamily CVS42_05080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_05080 PF03466 LysR substrate binding domain CVS42_05085 PF00106 short chain dehydrogenase CVS42_05090 PF01343 Peptidase family S49 CVS42_05090 PF08496 CVS42_05090 CVS42_05100 PF07690 Major Facilitator Superfamily CVS42_05105 PF02635 DsrE/DsrF-like family CVS42_05110 PF06476 CVS42_05110 CVS42_05115 PF12838 4Fe-4S dicluster domain CVS42_05120 PF01136 CVS42_05120 CVS42_05120 PF16325 CVS42_05120 CVS42_05145 PF04996 Succinylarginine dihydrolase CVS42_05150 PF01131 DNA topoisomerase CVS42_05150 PF01396 CVS42_05150 CVS42_05150 PF01751 Toprim domain CVS42_05150 PF08272 Topoisomerase I zinc-ribbon-like CVS42_05155 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS42_05160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_05160 PF08447 PAS fold CVS42_05165 PF00728 Glycosyl hydrolase family 20, catalytic domain CVS42_05165 PF02838 Glycosyl hydrolase family 20, domain 2 CVS42_05170 PF01869 BadF/BadG/BcrA/BcrD ATPase family CVS42_05175 PF00759 Glycosyl hydrolase family 9 CVS42_05175 PF02927 N-terminal ig-like domain of cellulase CVS42_05180 PF00005 ABC transporter CVS42_05180 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_05185 PF00005 ABC transporter CVS42_05185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_05190 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_05190 PF12911 CVS42_05190 CVS42_05195 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_05200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_05205 PF00072 Response regulator receiver domain CVS42_05205 PF00512 His Kinase A (phospho-acceptor) domain CVS42_05205 PF00672 HAMP domain CVS42_05205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_05205 PF02743 Cache domain CVS42_05205 PF08448 PAS fold CVS42_05225 PF10725 CVS42_05225 CVS42_05230 PF01609 Transposase DDE domain CVS42_05230 PF13006 CVS42_05230 CVS42_05235 PF10048 CVS42_05235 CVS42_05240 PF05114 Protein of unknown function (DUF692) CVS42_05245 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) CVS42_05250 PF07681 CVS42_05250 CVS42_05255 PF00583 Acetyltransferase (GNAT) family CVS42_05260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_05260 PF08447 PAS fold CVS42_05260 PF13426 PAS domain CVS42_05265 PF11810 CVS42_05265 CVS42_05270 PF13487 HD domain CVS42_05275 PF04632 CVS42_05275 CVS42_05280 PF00994 Probable molybdopterin binding domain CVS42_05280 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CVS42_05280 PF03453 MoeA N-terminal region (domain I and II) CVS42_05280 PF03454 MoeA C-terminal region (domain IV) CVS42_05285 PF12804 MobA-like NTP transferase domain CVS42_05290 PF00005 ABC transporter CVS42_05295 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_05300 PF12849 PBP superfamily domain CVS42_05305 PF00072 Response regulator receiver domain CVS42_05305 PF00158 Sigma-54 interaction domain CVS42_05305 PF02954 Bacterial regulatory protein, Fis family CVS42_05310 PF00512 His Kinase A (phospho-acceptor) domain CVS42_05310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_05310 PF17202 CVS42_05310 CVS42_05315 PF12727 PBP superfamily domain CVS42_05315 PF12728 Helix-turn-helix domain CVS42_05320 PF02634 FdhD/NarQ family CVS42_05330 PF11749 CVS42_05330 CVS42_05335 PF11748 CVS42_05335 CVS42_05340 PF00037 4Fe-4S binding domain CVS42_05340 PF12838 4Fe-4S dicluster domain CVS42_05345 PF02613 Nitrate reductase delta subunit CVS42_05355 PF00384 Molybdopterin oxidoreductase CVS42_05355 PF01568 Molydopterin dinucleotide binding domain CVS42_05355 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS42_05360 PF13247 4Fe-4S dicluster domain CVS42_05365 PF01292 Prokaryotic cytochrome b561 CVS42_05375 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_05380 PF00390 Malic enzyme, N-terminal domain CVS42_05380 PF03949 Malic enzyme, NAD binding domain CVS42_05385 PF16998 CVS42_05385 CVS42_05395 PF00860 Permease family CVS42_05400 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_05405 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_05405 PF00672 HAMP domain CVS42_05410 PF00486 Transcriptional regulatory protein, C terminal CVS42_05420 PF13673 Acetyltransferase (GNAT) domain CVS42_05425 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CVS42_05430 PF02685 Glucokinase CVS42_05435 PF01380 SIS domain CVS42_05435 PF01418 Helix-turn-helix domain, rpiR family CVS42_05440 PF00224 Pyruvate kinase, barrel domain CVS42_05440 PF02887 Pyruvate kinase, alpha/beta domain CVS42_05450 PF07969 Amidohydrolase family CVS42_05455 PF06445 GyrI-like small molecule binding domain CVS42_05455 PF12833 Helix-turn-helix domain CVS42_05460 PF02049 CVS42_05460 CVS42_05465 PF01514 Secretory protein of YscJ/FliF family CVS42_05465 PF08345 CVS42_05465 CVS42_05470 PF01706 FliG C-terminal domain CVS42_05470 PF14841 FliG middle domain CVS42_05470 PF14842 FliG N-terminal domain CVS42_05475 PF02108 CVS42_05475 CVS42_05480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_05485 PF02050 Flagellar FliJ protein CVS42_05490 PF02120 Flagellar hook-length control protein FliK CVS42_05495 PF03748 CVS42_05495 CVS42_05500 PF01052 Surface presentation of antigens (SPOA) CVS42_05500 PF02154 Flagellar motor switch protein FliM CVS42_05505 PF01052 Surface presentation of antigens (SPOA) CVS42_05510 PF04347 CVS42_05510 CVS42_05515 PF00813 CVS42_05515 CVS42_05520 PF01313 CVS42_05520 CVS42_05525 PF01311 CVS42_05525 CVS42_05530 PF01312 FlhB HrpN YscU SpaS Family CVS42_05535 PF00771 FHIPEP family CVS42_05540 PF00448 SRP54-type protein, GTPase domain CVS42_05545 PF10609 ParA/MinD ATPase like CVS42_05550 PF04539 Sigma-70 region 3 CVS42_05550 PF04542 Sigma-70 region 2 CVS42_05550 PF04545 Sigma-70, region 4 CVS42_05555 PF00072 Response regulator receiver domain CVS42_05560 PF04344 Chemotaxis phosphatase, CheZ CVS42_05565 PF01584 CheW-like domain CVS42_05565 PF01627 Hpt domain CVS42_05565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_05565 PF02895 Signal transducing histidine kinase, homodimeric domain CVS42_05570 PF00072 Response regulator receiver domain CVS42_05570 PF01339 CheB methylesterase CVS42_05575 PF01618 CVS42_05575 CVS42_05580 PF00691 OmpA family CVS42_05580 PF13677 CVS42_05580 CVS42_05585 PF13614 AAA domain CVS42_05590 PF01584 CheW-like domain CVS42_05595 PF01584 CheW-like domain CVS42_05600 PF10975 CVS42_05600 CVS42_05605 PF00005 ABC transporter CVS42_05610 PF03379 CVS42_05610 CVS42_05615 PF01578 CVS42_05615 CVS42_05620 PF04995 CVS42_05620 CVS42_05625 PF03100 CcmE CVS42_05630 PF01578 CVS42_05630 CVS42_05630 PF16327 CVS42_05630 CVS42_05635 PF08534 Redoxin CVS42_05640 PF03918 Cytochrome C biogenesis protein CVS42_05645 PF14559 Tetratricopeptide repeat CVS42_05650 PF04333 CVS42_05650 CVS42_05655 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CVS42_05655 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CVS42_05660 PF00462 Glutaredoxin CVS42_05665 PF08007 Cupin superfamily protein CVS42_05670 PF00206 Lyase CVS42_05670 PF08328 Adenylosuccinate lyase C-terminal CVS42_05675 PF04356 Protein of unknown function (DUF489) CVS42_05680 PF03054 tRNA methyl transferase CVS42_05685 PF00293 NUDIX domain CVS42_05690 PF00849 RNA pseudouridylate synthase CVS42_05695 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_05695 PF00381 PTS HPr component phosphorylation site CVS42_05700 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS42_05705 PF07690 Major Facilitator Superfamily CVS42_05710 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_05710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS42_05710 PF02378 Phosphotransferase system, EIIC CVS42_05720 PF04326 Divergent AAA domain CVS42_05730 PF00356 Bacterial regulatory proteins, lacI family CVS42_05730 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS42_05735 PF00367 phosphotransferase system, EIIB CVS42_05735 PF02378 Phosphotransferase system, EIIC CVS42_05740 PF00155 Aminotransferase class I and II CVS42_05765 PF01312 FlhB HrpN YscU SpaS Family CVS42_05770 PF01311 CVS42_05770 CVS42_05775 PF01313 CVS42_05775 CVS42_05780 PF00813 CVS42_05780 CVS42_05785 PF01052 Surface presentation of antigens (SPOA) CVS42_05795 PF07321 Type III secretion protein YscO CVS42_05800 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_05800 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVS42_05805 PF07201 HrpJ-like domain CVS42_05810 PF09059 TyeA CVS42_05820 PF09474 CVS42_05820 CVS42_05825 PF13174 Tetratricopeptide repeat CVS42_05830 PF00771 FHIPEP family CVS42_05835 PF09621 CVS42_05835 CVS42_05840 PF07216 CVS42_05840 CVS42_05845 PF04792 V antigen (LcrV) protein CVS42_05850 PF07720 Tetratricopeptide repeat CVS42_05855 PF04888 CVS42_05855 CVS42_05860 PF05844 YopD protein CVS42_05865 PF05932 Tir chaperone protein (CesT) family CVS42_05875 PF09619 Type III secretion system lipoprotein chaperone (YscW) CVS42_05880 PF12833 Helix-turn-helix domain CVS42_05885 PF16806 CVS42_05885 CVS42_05890 PF05932 Tir chaperone protein (CesT) family CVS42_05895 PF00263 CVS42_05895 CVS42_05895 PF03958 Bacterial type II/III secretion system short domain CVS42_05900 PF16693 CVS42_05900 CVS42_05900 PF16697 CVS42_05900 CVS42_05905 PF08988 Protein of unknown function (DUF1895) CVS42_05910 PF09392 Type III secretion needle MxiH like CVS42_05915 PF09477 Bacterial type II secretion system chaperone protein (type_III_yscG) CVS42_05920 PF09025 YopR Core CVS42_05925 PF17001 CVS42_05925 CVS42_05930 PF01514 Secretory protein of YscJ/FliF family CVS42_05935 PF06578 CVS42_05935 CVS42_05940 PF02108 CVS42_05940 CVS42_05945 PF02075 Crossover junction endodeoxyribonuclease RuvC CVS42_05950 PF16576 CVS42_05950 CVS42_05955 PF00873 AcrB/AcrD/AcrF family CVS42_05960 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS42_05960 PF02770 Acyl-CoA dehydrogenase, middle domain CVS42_05960 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS42_05960 PF09317 CVS42_05960 CVS42_05965 PF00440 Bacterial regulatory proteins, tetR family CVS42_05985 PF00082 Subtilase family CVS42_05990 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_05995 PF06154 YagB/YeeU/YfjZ family CVS42_06045 PF04002 RadC-like JAB domain CVS42_06060 PF10980 Protein of unknown function (DUF2787) CVS42_06075 PF01381 Helix-turn-helix CVS42_06080 PF04970 Lecithin retinol acyltransferase CVS42_06085 PF06067 CVS42_06085 CVS42_06100 PF04055 Radical SAM superfamily CVS42_06115 PF11726 CVS42_06115 CVS42_06120 PF13148 CVS42_06120 CVS42_06125 PF05930 Prophage CP4-57 regulatory protein (AlpA) CVS42_06145 PF00816 H-NS histone family CVS42_06175 PF00563 EAL domain CVS42_06190 PF00072 Response regulator receiver domain CVS42_06190 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_06190 PF00512 His Kinase A (phospho-acceptor) domain CVS42_06190 PF00989 PAS fold CVS42_06190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_06205 PF00072 Response regulator receiver domain CVS42_06210 PF00072 Response regulator receiver domain CVS42_06210 PF00196 Bacterial regulatory proteins, luxR family CVS42_06215 PF00577 Outer membrane usher protein CVS42_06215 PF13953 PapC C-terminal domain CVS42_06215 PF13954 PapC N-terminal domain CVS42_06220 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain CVS42_06220 PF02753 Pili assembly chaperone PapD, C-terminal domain CVS42_06225 PF00419 Fimbrial protein CVS42_06240 PF00665 Integrase core domain CVS42_06240 PF13936 Helix-turn-helix domain CVS42_06250 PF02368 Bacterial Ig-like domain (group 2) CVS42_06260 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_06265 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_06265 PF12729 CVS42_06265 CVS42_06270 PF13737 CVS42_06270 CVS42_06285 PF00589 Phage integrase family CVS42_06285 PF13356 Domain of unknown function (DUF4102) CVS42_06295 PF00072 Response regulator receiver domain CVS42_06295 PF00563 EAL domain CVS42_06300 PF00072 Response regulator receiver domain CVS42_06300 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_06300 PF00512 His Kinase A (phospho-acceptor) domain CVS42_06300 PF01627 Hpt domain CVS42_06300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_06300 PF08448 PAS fold CVS42_06310 PF01668 SmpB protein CVS42_06315 PF03364 Polyketide cyclase / dehydrase and lipid transport CVS42_06320 PF03658 RnfH family Ubiquitin CVS42_06325 PF01546 Peptidase family M20/M25/M40 CVS42_06325 PF07687 Peptidase dimerisation domain CVS42_06330 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS42_06330 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS42_06330 PF09317 CVS42_06330 CVS42_06335 PF13580 SIS domain CVS42_06340 PF13230 Glutamine amidotransferases class-II CVS42_06345 PF01627 Hpt domain CVS42_06350 PF01933 Uncharacterised protein family UPF0052 CVS42_06355 PF08495 CVS42_06355 CVS42_06355 PF10442 CVS42_06355 CVS42_06360 PF00072 Response regulator receiver domain CVS42_06360 PF00512 His Kinase A (phospho-acceptor) domain CVS42_06360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_06365 PF02190 ATP-dependent protease La (LON) domain CVS42_06370 PF00072 Response regulator receiver domain CVS42_06370 PF00196 Bacterial regulatory proteins, luxR family CVS42_06375 PF00672 HAMP domain CVS42_06375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_06375 PF07730 Histidine kinase CVS42_06375 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CVS42_06380 PF04055 Radical SAM superfamily CVS42_06380 PF06463 Molybdenum Cofactor Synthesis C CVS42_06380 PF13353 4Fe-4S single cluster domain CVS42_06385 PF12838 4Fe-4S dicluster domain CVS42_06385 PF13187 4Fe-4S dicluster domain CVS42_06390 PF03927 NapD protein CVS42_06395 PF00384 Molybdopterin oxidoreductase CVS42_06395 PF01568 Molydopterin dinucleotide binding domain CVS42_06395 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS42_06395 PF10518 TAT (twin-arginine translocation) pathway signal sequence CVS42_06400 PF12800 4Fe-4S binding domain CVS42_06400 PF12838 4Fe-4S dicluster domain CVS42_06405 PF12801 CVS42_06405 CVS42_06410 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CVS42_06415 PF03264 NapC/NirT cytochrome c family, N-terminal region CVS42_06420 PF00994 Probable molybdopterin binding domain CVS42_06425 PF01967 MoaC family CVS42_06430 PF02597 ThiS family CVS42_06435 PF02391 MoaE protein CVS42_06440 PF13531 Bacterial extracellular solute-binding protein CVS42_06445 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_06450 PF00005 ABC transporter CVS42_06450 PF03459 TOBE domain CVS42_06455 PF00561 alpha/beta hydrolase fold CVS42_06460 PF06406 StbA protein CVS42_06470 PF00899 ThiF family CVS42_06475 PF00994 Probable molybdopterin binding domain CVS42_06475 PF03453 MoeA N-terminal region (domain I and II) CVS42_06475 PF03454 MoeA C-terminal region (domain IV) CVS42_06480 PF01227 GTP cyclohydrolase I CVS42_06485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_06485 PF02743 Cache domain CVS42_06490 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_06490 PF00672 HAMP domain CVS42_06490 PF12729 CVS42_06490 CVS42_06495 PF01268 Formate--tetrahydrofolate ligase CVS42_06505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_06505 PF03466 LysR substrate binding domain CVS42_06510 PF04264 YceI-like domain CVS42_06520 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CVS42_06525 PF10262 Rdx family CVS42_06530 PF01553 Acyltransferase CVS42_06530 PF13444 Acetyltransferase (GNAT) domain CVS42_06535 PF01546 Peptidase family M20/M25/M40 CVS42_06535 PF07687 Peptidase dimerisation domain CVS42_06545 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS42_06555 PF00753 Metallo-beta-lactamase superfamily CVS42_06555 PF14863 Alkyl sulfatase dimerisation CVS42_06555 PF14864 Alkyl sulfatase C-terminal CVS42_06570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_06580 PF01042 Endoribonuclease L-PSP CVS42_06585 PF03313 CVS42_06585 CVS42_06590 PF08348 CVS42_06590 CVS42_06590 PF13309 CVS42_06590 CVS42_06595 PF00300 Histidine phosphatase superfamily (branch 1) CVS42_06600 PF07055 Enoyl reductase FAD binding domain CVS42_06600 PF12241 Trans-2-enoyl-CoA reductase catalytic region CVS42_06600 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase CVS42_06610 PF00155 Aminotransferase class I and II CVS42_06615 PF07866 Protein of unknown function (DUF1653) CVS42_06620 PF00230 Major intrinsic protein CVS42_06625 PF01464 Transglycosylase SLT domain CVS42_06630 PF13673 Acetyltransferase (GNAT) domain CVS42_06635 PF07273 Protein of unknown function (DUF1439) CVS42_06640 PF13091 PLD-like domain CVS42_06640 PF13396 CVS42_06640 CVS42_06645 PF06097 CVS42_06645 CVS42_06650 PF00551 Formyl transferase CVS42_06650 PF01842 ACT domain CVS42_06655 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CVS42_06660 PF04728 Lipoprotein leucine-zipper CVS42_06665 PF00085 Thioredoxin CVS42_06665 PF14559 Tetratricopeptide repeat CVS42_06665 PF14561 Tetratricopeptide repeat CVS42_06670 PF01648 4'-phosphopantetheinyl transferase superfamily CVS42_06675 PF00877 NlpC/P60 family CVS42_06680 PF05971 Protein of unknown function (DUF890) CVS42_06685 PF01575 MaoC like domain CVS42_06690 PF00939 Sodium:sulfate symporter transmembrane region CVS42_06695 PF04338 Protein of unknown function, DUF481 CVS42_06700 PF03734 L,D-transpeptidase catalytic domain CVS42_06710 PF00873 AcrB/AcrD/AcrF family CVS42_06715 PF16576 CVS42_06715 CVS42_06720 PF00072 Response regulator receiver domain CVS42_06720 PF00486 Transcriptional regulatory protein, C terminal CVS42_06725 PF00512 His Kinase A (phospho-acceptor) domain CVS42_06725 PF00672 HAMP domain CVS42_06725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_06730 PF00176 SNF2 family N-terminal domain CVS42_06730 PF00271 Helicase conserved C-terminal domain CVS42_06735 PF05472 DNA replication terminus site-binding protein (Ter protein) CVS42_06740 PF06568 CVS42_06740 CVS42_06745 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family CVS42_06750 PF01464 Transglycosylase SLT domain CVS42_06750 PF01476 LysM domain CVS42_06755 PF00753 Metallo-beta-lactamase superfamily CVS42_06755 PF16123 CVS42_06755 CVS42_06760 PF08241 Methyltransferase domain CVS42_06765 PF00075 RNase H CVS42_06770 PF00929 Exonuclease CVS42_06780 PF00072 Response regulator receiver domain CVS42_06780 PF01966 HD domain CVS42_06780 PF11849 CVS42_06780 CVS42_06785 PF04954 Siderophore-interacting protein CVS42_06785 PF08021 Siderophore-interacting FAD-binding domain CVS42_06790 PF00593 TonB dependent receptor CVS42_06790 PF07715 TonB-dependent Receptor Plug Domain CVS42_06795 PF01032 FecCD transport family CVS42_06800 PF01032 FecCD transport family CVS42_06805 PF00005 ABC transporter CVS42_06810 PF01497 Periplasmic binding protein CVS42_06815 PF11604 Copper binding periplasmic protein CusF CVS42_06820 PF00873 AcrB/AcrD/AcrF family CVS42_06825 PF11604 Copper binding periplasmic protein CusF CVS42_06825 PF16576 CVS42_06825 CVS42_06835 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_06840 PF00873 AcrB/AcrD/AcrF family CVS42_06845 PF16576 CVS42_06845 CVS42_06850 PF03372 Endonuclease/Exonuclease/phosphatase family CVS42_06855 PF00805 Pentapeptide repeats (8 copies) CVS42_06855 PF07885 Ion channel CVS42_06860 PF00072 Response regulator receiver domain CVS42_06860 PF13432 Tetratricopeptide repeat CVS42_06860 PF14559 Tetratricopeptide repeat CVS42_06870 PF02424 ApbE family CVS42_06875 PF00127 Copper binding proteins, plastocyanin/azurin family CVS42_06880 PF05962 HutD CVS42_06885 PF04337 Protein of unknown function, DUF480 CVS42_06890 PF00990 GGDEF domain CVS42_06895 PF13416 Bacterial extracellular solute-binding protein CVS42_06900 PF04325 Protein of unknown function (DUF465) CVS42_06915 PF00916 CVS42_06915 CVS42_06915 PF01740 STAS domain CVS42_06920 PF06042 Bacterial protein of unknown function (DUF925) CVS42_06925 PF14542 GCN5-related N-acetyl-transferase CVS42_06930 PF00465 Iron-containing alcohol dehydrogenase CVS42_06940 PF00440 Bacterial regulatory proteins, tetR family CVS42_06945 PF00171 Aldehyde dehydrogenase family CVS42_06955 PF01156 Inosine-uridine preferring nucleoside hydrolase CVS42_06960 PF12321 CVS42_06960 CVS42_06965 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS42_06970 PF13450 NAD(P)-binding Rossmann-like domain CVS42_06975 PF05656 CVS42_06975 CVS42_06980 PF02698 DUF218 domain CVS42_06985 PF01223 DNA/RNA non-specific endonuclease CVS42_06990 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_06990 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS42_06990 PF02378 Phosphotransferase system, EIIC CVS42_06995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_06995 PF00672 HAMP domain CVS42_06995 PF12729 CVS42_06995 CVS42_07000 PF01238 Phosphomannose isomerase type I CVS42_07005 PF12833 Helix-turn-helix domain CVS42_07010 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS42_07020 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_07025 PF02447 CVS42_07025 CVS42_07030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_07030 PF03466 LysR substrate binding domain CVS42_07040 PF00877 NlpC/P60 family CVS42_07045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_07045 PF03466 LysR substrate binding domain CVS42_07050 PF00578 AhpC/TSA family CVS42_07050 PF10417 C-terminal domain of 1-Cys peroxiredoxin CVS42_07060 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_07065 PF01490 CVS42_07065 CVS42_07070 PF00871 Acetokinase family CVS42_07075 PF01228 Glycine radical CVS42_07075 PF02901 Pyruvate formate lyase CVS42_07080 PF01042 Endoribonuclease L-PSP CVS42_07085 PF01189 NOL1/NOP2/sun family CVS42_07090 PF13583 Metallo-peptidase family M12B Reprolysin-like CVS42_07105 PF13583 Metallo-peptidase family M12B Reprolysin-like CVS42_07115 PF13583 Metallo-peptidase family M12B Reprolysin-like CVS42_07120 PF01243 Pyridoxamine 5'-phosphate oxidase CVS42_07120 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CVS42_07125 PF00043 Glutathione S-transferase, C-terminal domain CVS42_07125 PF13417 Glutathione S-transferase, N-terminal domain CVS42_07130 PF13302 Acetyltransferase (GNAT) domain CVS42_07135 PF00583 Acetyltransferase (GNAT) family CVS42_07160 PF12762 CVS42_07160 CVS42_07160 PF13384 Homeodomain-like domain CVS42_07175 PF00459 Inositol monophosphatase family CVS42_07185 PF00043 Glutathione S-transferase, C-terminal domain CVS42_07185 PF02798 Glutathione S-transferase, N-terminal domain CVS42_07190 PF07690 Major Facilitator Superfamily CVS42_07200 PF05164 Cell division protein ZapA CVS42_07205 PF03695 Uncharacterised protein family (UPF0149) CVS42_07210 PF01494 FAD binding domain CVS42_07215 PF01494 FAD binding domain CVS42_07225 PF01571 Aminomethyltransferase folate-binding domain CVS42_07225 PF08669 Glycine cleavage T-protein C-terminal barrel domain CVS42_07230 PF01597 Glycine cleavage H-protein CVS42_07235 PF02347 Glycine cleavage system P-protein CVS42_07240 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_07240 PF08447 PAS fold CVS42_07245 PF03773 CVS42_07245 CVS42_07250 PF12840 Helix-turn-helix domain CVS42_07255 PF00324 Amino acid permease CVS42_07265 PF03618 CVS42_07265 CVS42_07270 PF00391 PEP-utilising enzyme, mobile domain CVS42_07270 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CVS42_07270 PF02896 PEP-utilising enzyme, TIM barrel domain CVS42_07280 PF00082 Subtilase family CVS42_07280 PF01483 Proprotein convertase P-domain CVS42_07285 PF03180 NLPA lipoprotein CVS42_07290 PF00884 Sulfatase CVS42_07290 PF11893 CVS42_07290 CVS42_07295 PF07208 Protein of unknown function (DUF1414) CVS42_07300 PF04245 CVS42_07300 CVS42_07305 PF13416 Bacterial extracellular solute-binding protein CVS42_07310 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_07310 PF14785 Maltose transport system permease protein MalF P2 domain CVS42_07315 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_07320 PF00005 ABC transporter CVS42_07320 PF08402 TOBE domain CVS42_07325 PF03976 Polyphosphate kinase 2 (PPK2) CVS42_07330 PF00561 alpha/beta hydrolase fold CVS42_07335 PF06629 CVS42_07335 CVS42_07340 PF01594 CVS42_07340 CVS42_07345 PF01206 Sulfurtransferase TusA CVS42_07350 PF01435 Peptidase family M48 CVS42_07350 PF14559 Tetratricopeptide repeat CVS42_07355 PF08534 Redoxin CVS42_07360 PF03960 ArsC family CVS42_07365 PF09842 CVS42_07365 CVS42_07370 PF04336 CVS42_07370 CVS42_07380 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_07390 PF03956 CVS42_07390 CVS42_07395 PF00005 ABC transporter CVS42_07400 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_07405 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_07410 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_07415 PF00849 RNA pseudouridylate synthase CVS42_07420 PF12710 haloacid dehalogenase-like hydrolase CVS42_07425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_07425 PF14696 Hydroxyphenylpyruvate dioxygenase, HPPD, N-terminal CVS42_07430 PF04209 homogentisate 1,2-dioxygenase CVS42_07435 PF01557 Fumarylacetoacetate (FAA) hydrolase family CVS42_07440 PF13417 Glutathione S-transferase, N-terminal domain CVS42_07440 PF14497 Glutathione S-transferase, C-terminal domain CVS42_07445 PF00574 Clp protease CVS42_07450 PF00665 Integrase core domain CVS42_07450 PF13551 Winged helix-turn helix CVS42_07465 PF00733 Asparagine synthase CVS42_07465 PF13537 Glutamine amidotransferase domain CVS42_07470 PF05899 Protein of unknown function (DUF861) CVS42_07475 PF00999 Sodium/hydrogen exchanger family CVS42_07475 PF02254 TrkA-N domain CVS42_07480 PF13242 HAD-hyrolase-like CVS42_07480 PF13344 Haloacid dehalogenase-like hydrolase CVS42_07485 PF00962 Adenosine/AMP deaminase CVS42_07490 PF00107 Zinc-binding dehydrogenase CVS42_07490 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_07495 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS42_07500 PF00571 CBS domain CVS42_07500 PF03471 Transporter associated domain CVS42_07500 PF03741 CVS42_07500 CVS42_07505 PF01545 Cation efflux family CVS42_07510 PF01565 FAD binding domain CVS42_07510 PF02913 FAD linked oxidases, C-terminal domain CVS42_07510 PF13183 4Fe-4S dicluster domain CVS42_07520 PF03061 Thioesterase superfamily CVS42_07525 PF00270 DEAD/DEAH box helicase CVS42_07525 PF00271 Helicase conserved C-terminal domain CVS42_07525 PF03880 DbpA RNA binding domain CVS42_07535 PF00353 Hemolysin-type calcium-binding repeat (2 copies) CVS42_07535 PF13519 von Willebrand factor type A domain CVS42_07545 PF04402 Protein of unknown function (DUF541) CVS42_07550 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_07550 PF13192 Thioredoxin domain CVS42_07555 PF00578 AhpC/TSA family CVS42_07555 PF10417 C-terminal domain of 1-Cys peroxiredoxin CVS42_07560 PF00571 CBS domain CVS42_07565 PF02547 Queuosine biosynthesis protein CVS42_07570 PF01702 Queuine tRNA-ribosyltransferase CVS42_07575 PF02699 Preprotein translocase subunit CVS42_07580 PF02355 Protein export membrane protein CVS42_07580 PF07549 SecD/SecF GG Motif CVS42_07580 PF13721 SecD export protein N-terminal TM region CVS42_07585 PF02355 Protein export membrane protein CVS42_07585 PF07549 SecD/SecF GG Motif CVS42_07590 PF00581 Rhodanese-like domain CVS42_07595 PF00515 Tetratricopeptide repeat CVS42_07600 PF01136 CVS42_07600 CVS42_07605 PF01136 CVS42_07605 CVS42_07610 PF02036 SCP-2 sterol transfer family CVS42_07620 PF00588 SpoU rRNA Methylase family CVS42_07625 PF02082 Transcriptional regulator CVS42_07630 PF00266 Aminotransferase class-V CVS42_07635 PF01592 NifU-like N terminal domain CVS42_07640 PF01521 Iron-sulphur cluster biosynthesis CVS42_07645 PF07743 HSCB C-terminal oligomerisation domain CVS42_07650 PF00012 Hsp70 protein CVS42_07655 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_07660 PF00883 Cytosol aminopeptidase family, catalytic domain CVS42_07660 PF12404 CVS42_07660 CVS42_07665 PF00883 Cytosol aminopeptidase family, catalytic domain CVS42_07665 PF12404 CVS42_07665 CVS42_07670 PF00334 Nucleoside diphosphate kinase CVS42_07675 PF04055 Radical SAM superfamily CVS42_07680 PF13181 Tetratricopeptide repeat CVS42_07680 PF13431 Tetratricopeptide repeat CVS42_07680 PF14559 Tetratricopeptide repeat CVS42_07685 PF13413 Helix-turn-helix domain CVS42_07685 PF13464 CVS42_07685 CVS42_07690 PF04551 GcpE protein CVS42_07695 PF03129 Anticodon binding domain CVS42_07695 PF13393 Histidyl-tRNA synthetase CVS42_07700 PF09976 Tetratricopeptide repeat CVS42_07705 PF13360 PQQ-like domain CVS42_07710 PF01926 50S ribosome-binding GTPase CVS42_07710 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CVS42_07715 PF07191 zinc-ribbons CVS42_07725 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_07725 PF01464 Transglycosylase SLT domain CVS42_07730 PF02769 AIR synthase related protein, C-terminal domain CVS42_07730 PF13507 CobB/CobQ-like glutamine amidotransferase domain CVS42_07735 PF03553 CVS42_07735 CVS42_07735 PF13726 CVS42_07735 CVS42_07740 PF00929 Exonuclease CVS42_07745 PF01569 PAP2 superfamily CVS42_07750 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS42_07750 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS42_07750 PF11890 Domain of unknown function (DUF3410) CVS42_07755 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS42_07755 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS42_07765 PF01416 tRNA pseudouridine synthase CVS42_07770 PF01039 Carboxyl transferase domain CVS42_07775 PF02875 Mur ligase family, glutamate ligase domain CVS42_07775 PF08245 Mur ligase middle domain CVS42_07780 PF05036 Sporulation related domain CVS42_07785 PF01906 Putative heavy-metal-binding CVS42_07795 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS42_07795 PF10414 Sirohaem synthase dimerisation region CVS42_07795 PF13241 Putative NAD(P)-binding CVS42_07795 PF14824 Sirohaem biosynthesis protein central CVS42_07800 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CVS42_07800 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CVS42_07800 PF14697 4Fe-4S dicluster domain CVS42_07805 PF00175 Oxidoreductase NAD-binding domain CVS42_07805 PF00970 Oxidoreductase FAD-binding domain CVS42_07805 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CVS42_07810 PF17179 CVS42_07810 CVS42_07815 PF01734 Patatin-like phospholipase CVS42_07820 PF02016 LD-carboxypeptidase CVS42_07825 PF00884 Sulfatase CVS42_07835 PF00696 Amino acid kinase family CVS42_07840 PF00583 Acetyltransferase (GNAT) family CVS42_07840 PF00696 Amino acid kinase family CVS42_07845 PF01625 Peptide methionine sulfoxide reductase CVS42_07850 PF12290 CVS42_07850 CVS42_07855 PF13673 Acetyltransferase (GNAT) domain CVS42_07860 PF04237 YjbR CVS42_07865 PF12697 Alpha/beta hydrolase family CVS42_07870 PF07143 Hydroxyneurosporene synthase (CrtC) CVS42_07870 PF17186 CVS42_07870 CVS42_07875 PF02687 CVS42_07875 CVS42_07875 PF12704 MacB-like periplasmic core domain CVS42_07880 PF00005 ABC transporter CVS42_07885 PF14267 CVS42_07885 CVS42_07890 PF03600 Citrate transporter CVS42_07895 PF07690 Major Facilitator Superfamily CVS42_07910 PF01593 Flavin containing amine oxidoreductase CVS42_07915 PF03239 CVS42_07915 CVS42_07930 PF03350 CVS42_07930 CVS42_07935 PF11059 CVS42_07935 CVS42_07940 PF05930 Prophage CP4-57 regulatory protein (AlpA) CVS42_07950 PF13481 AAA domain CVS42_07980 PF13643 CVS42_07980 CVS42_07985 PF01906 Putative heavy-metal-binding CVS42_07990 PF08238 Sel1 repeat CVS42_07995 PF00589 Phage integrase family CVS42_08020 PF03432 CVS42_08020 CVS42_08040 PF00589 Phage integrase family CVS42_08040 PF13356 Domain of unknown function (DUF4102) CVS42_08040 PF14659 Phage integrase, N-terminal SAM-like domain CVS42_08060 PF00916 CVS42_08060 CVS42_08060 PF01740 STAS domain CVS42_08070 PF01026 TatD related DNase CVS42_08085 PF07693 CVS42_08085 CVS42_08090 PF06154 YagB/YeeU/YfjZ family CVS42_08115 PF06154 YagB/YeeU/YfjZ family CVS42_08145 PF04002 RadC-like JAB domain CVS42_08155 PF10980 Protein of unknown function (DUF2787) CVS42_08175 PF00239 Resolvase, N terminal domain CVS42_08175 PF02796 Helix-turn-helix domain of resolvase CVS42_08185 PF05930 Prophage CP4-57 regulatory protein (AlpA) CVS42_08190 PF13148 CVS42_08190 CVS42_08195 PF11726 CVS42_08195 CVS42_08200 PF00816 H-NS histone family CVS42_08205 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_08210 PF02311 AraC-like ligand binding domain CVS42_08210 PF12833 Helix-turn-helix domain CVS42_08225 PF00753 Metallo-beta-lactamase superfamily CVS42_08225 PF14863 Alkyl sulfatase dimerisation CVS42_08225 PF14864 Alkyl sulfatase C-terminal CVS42_08235 PF05638 Protein of unknown function (DUF796) CVS42_08240 PF05488 PAAR motif CVS42_08245 PF05954 Phage late control gene D protein (GPD) CVS42_08250 PF13503 CVS42_08250 CVS42_08280 PF00589 Phage integrase family CVS42_08280 PF13356 Domain of unknown function (DUF4102) CVS42_08285 PF02132 RecR protein CVS42_08285 PF13662 Toprim domain CVS42_08290 PF00183 Hsp90 protein CVS42_08290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_08295 PF00005 ABC transporter CVS42_08300 PF00005 ABC transporter CVS42_08300 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_08305 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_08305 PF12911 CVS42_08305 CVS42_08310 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_08315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_08320 PF00158 Sigma-54 interaction domain CVS42_08325 PF04012 CVS42_08325 CVS42_08330 PF06667 CVS42_08330 CVS42_08335 PF04024 CVS42_08335 CVS42_08340 PF04317 CVS42_08340 CVS42_08345 PF05128 CVS42_08345 CVS42_08350 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CVS42_08355 PF01329 Pterin 4 alpha carbinolamine dehydratase CVS42_08365 PF00158 Sigma-54 interaction domain CVS42_08365 PF00989 PAS fold CVS42_08370 PF13689 CVS42_08370 CVS42_08375 PF00990 GGDEF domain CVS42_08375 PF17152 CVS42_08375 CVS42_08380 PF00691 OmpA family CVS42_08385 PF03741 CVS42_08385 CVS42_08390 PF01513 ATP-NAD kinase CVS42_08395 PF08891 CVS42_08395 CVS42_08400 PF00501 AMP-binding enzyme CVS42_08405 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS42_08410 PF03171 2OG-Fe(II) oxygenase superfamily CVS42_08410 PF14226 non-haem dioxygenase in morphine synthesis N-terminal CVS42_08420 PF13460 NADH(P)-binding CVS42_08425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08425 PF03466 LysR substrate binding domain CVS42_08430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08430 PF03466 LysR substrate binding domain CVS42_08435 PF07690 Major Facilitator Superfamily CVS42_08440 PF02678 Pirin CVS42_08440 PF05726 Pirin C-terminal cupin domain CVS42_08445 PF00857 Isochorismatase family CVS42_08450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08450 PF03466 LysR substrate binding domain CVS42_08455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08455 PF03466 LysR substrate binding domain CVS42_08460 PF01717 Cobalamin-independent synthase, Catalytic domain CVS42_08460 PF08267 Cobalamin-independent synthase, N-terminal domain CVS42_08465 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_08470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08470 PF03466 LysR substrate binding domain CVS42_08475 PF00232 Glycosyl hydrolase family 1 CVS42_08480 PF02624 YcaO-like family CVS42_08485 PF01226 Formate/nitrite transporter CVS42_08490 PF01228 Glycine radical CVS42_08490 PF02901 Pyruvate formate lyase CVS42_08495 PF03692 CVS42_08495 CVS42_08505 PF14056 CVS42_08505 CVS42_08510 PF00343 Carbohydrate phosphorylase CVS42_08515 PF00939 Sodium:sulfate symporter transmembrane region CVS42_08520 PF00085 Thioredoxin CVS42_08525 PF00072 Response regulator receiver domain CVS42_08525 PF00512 His Kinase A (phospho-acceptor) domain CVS42_08525 PF01627 Hpt domain CVS42_08525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_08530 PF00005 ABC transporter CVS42_08530 PF00664 ABC transporter transmembrane region CVS42_08535 PF00005 ABC transporter CVS42_08535 PF00664 ABC transporter transmembrane region CVS42_08540 PF14539 Domain of unknown function (DUF4442) CVS42_08545 PF13275 S4 domain CVS42_08560 PF08543 Phosphomethylpyrimidine kinase CVS42_08565 PF00465 Iron-containing alcohol dehydrogenase CVS42_08570 PF13673 Acetyltransferase (GNAT) domain CVS42_08575 PF00293 NUDIX domain CVS42_08590 PF14302 CVS42_08590 CVS42_08595 PF00285 Citrate synthase CVS42_08600 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CVS42_08605 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CVS42_08610 PF00890 FAD binding domain CVS42_08610 PF02910 Fumarate reductase flavoprotein C-term CVS42_08615 PF13085 2Fe-2S iron-sulfur cluster binding domain CVS42_08615 PF13534 4Fe-4S dicluster domain CVS42_08620 PF00676 Dehydrogenase E1 component CVS42_08620 PF02779 Transketolase, pyrimidine binding domain CVS42_08620 PF16078 CVS42_08620 CVS42_08620 PF16870 CVS42_08620 CVS42_08625 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS42_08625 PF00364 Biotin-requiring enzyme CVS42_08625 PF02817 e3 binding domain CVS42_08630 PF00549 CoA-ligase CVS42_08630 PF08442 ATP-grasp domain CVS42_08635 PF00549 CoA-ligase CVS42_08635 PF02629 CoA binding domain CVS42_08640 PF01266 FAD dependent oxidoreductase CVS42_08645 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_08650 PF00005 ABC transporter CVS42_08650 PF08402 TOBE domain CVS42_08655 PF13343 Bacterial extracellular solute-binding protein CVS42_08660 PF00392 Bacterial regulatory proteins, gntR family CVS42_08660 PF07702 UTRA domain CVS42_08665 PF00266 Aminotransferase class-V CVS42_08670 PF00202 Aminotransferase class-III CVS42_08680 PF00293 NUDIX domain CVS42_08685 PF10026 CVS42_08685 CVS42_08690 PF03918 Cytochrome C biogenesis protein CVS42_08695 PF00578 AhpC/TSA family CVS42_08700 PF01578 CVS42_08700 CVS42_08700 PF16327 CVS42_08700 CVS42_08705 PF03916 CVS42_08705 CVS42_08710 PF13247 4Fe-4S dicluster domain CVS42_08715 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) CVS42_08715 PF13435 Cytochrome c554 and c-prime CVS42_08720 PF02335 Cytochrome c552 CVS42_08730 PF02754 CVS42_08730 CVS42_08730 PF13183 4Fe-4S dicluster domain CVS42_08735 PF00890 FAD binding domain CVS42_08740 PF01266 FAD dependent oxidoreductase CVS42_08740 PF04324 BFD-like [2Fe-2S] binding domain CVS42_08745 PF02810 SEC-C motif CVS42_08750 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_08750 PF00672 HAMP domain CVS42_08750 PF17200 CVS42_08750 CVS42_08755 PF00480 ROK family CVS42_08760 PF03942 CVS42_08760 CVS42_08765 PF01925 CVS42_08765 CVS42_08770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08770 PF03466 LysR substrate binding domain CVS42_08775 PF00892 EamA-like transporter family CVS42_08780 PF12833 Helix-turn-helix domain CVS42_08785 PF11398 Protein of unknown function (DUF2813) CVS42_08795 PF00128 Alpha amylase, catalytic domain CVS42_08795 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS42_08820 PF00883 Cytosol aminopeptidase family, catalytic domain CVS42_08825 PF13419 Haloacid dehalogenase-like hydrolase CVS42_08830 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_08840 PF01207 Dihydrouridine synthase (Dus) CVS42_08845 PF04304 CVS42_08845 CVS42_08850 PF00156 Phosphoribosyl transferase domain CVS42_08855 PF12169 DNA polymerase III subunits gamma and tau domain III CVS42_08855 PF12170 DNA polymerase III tau subunit V interacting with alpha CVS42_08855 PF13177 DNA polymerase III, delta subunit CVS42_08860 PF02575 YbaB/EbfC DNA-binding family CVS42_08865 PF01261 Xylose isomerase-like TIM barrel CVS42_08870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_08870 PF03466 LysR substrate binding domain CVS42_08875 PF03595 Voltage-dependent anion channel CVS42_08880 PF03279 CVS42_08880 CVS42_08885 PF03279 CVS42_08885 CVS42_08890 PF01163 RIO1 family CVS42_08895 PF13302 Acetyltransferase (GNAT) domain CVS42_08900 PF00990 GGDEF domain CVS42_08905 PF04073 Aminoacyl-tRNA editing domain CVS42_08910 PF00136 DNA polymerase family B CVS42_08910 PF03104 DNA polymerase family B, exonuclease domain CVS42_08915 PF06183 DinI-like family CVS42_08920 PF11150 CVS42_08920 CVS42_08925 PF01863 Protein of unknown function DUF45 CVS42_08935 PF00149 Calcineurin-like phosphoesterase CVS42_08935 PF02872 5'-nucleotidase, C-terminal domain CVS42_08940 PF03606 CVS42_08940 CVS42_08950 PF06037 CVS42_08950 CVS42_08955 PF01266 FAD dependent oxidoreductase CVS42_08955 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CVS42_08960 PF00109 Beta-ketoacyl synthase, N-terminal domain CVS42_08960 PF02801 Beta-ketoacyl synthase, C-terminal domain CVS42_08965 PF02080 TrkA-C domain CVS42_08965 PF06826 CVS42_08965 CVS42_08975 PF00271 Helicase conserved C-terminal domain CVS42_08975 PF02151 UvrB/uvrC motif CVS42_08975 PF04851 Type III restriction enzyme, res subunit CVS42_08975 PF12344 Ultra-violet resistance protein B CVS42_08980 PF06803 CVS42_08980 CVS42_08985 PF09335 CVS42_08985 CVS42_08990 PF02600 Disulfide bond formation protein DsbB CVS42_08995 PF06450 CVS42_08995 CVS42_09000 PF00392 Bacterial regulatory proteins, gntR family CVS42_09000 PF07840 FadR C-terminal domain CVS42_09005 PF09574 CVS42_09005 CVS42_09010 PF07152 YaeQ protein CVS42_09015 PF03547 CVS42_09015 CVS42_09025 PF00158 Sigma-54 interaction domain CVS42_09025 PF02954 Bacterial regulatory protein, Fis family CVS42_09055 PF01554 MatE CVS42_09060 PF06786 CVS42_09060 CVS42_09065 PF00892 EamA-like transporter family CVS42_09070 PF00677 Lumazine binding domain CVS42_09075 PF14255 CVS42_09075 CVS42_09080 PF13419 Haloacid dehalogenase-like hydrolase CVS42_09085 PF01370 NAD dependent epimerase/dehydratase family CVS42_09085 PF02222 ATP-grasp domain CVS42_09090 PF00892 EamA-like transporter family CVS42_09095 PF02525 Flavodoxin-like fold CVS42_09105 PF14056 CVS42_09105 CVS42_09110 PF12802 MarR family CVS42_09115 PF03695 Uncharacterised protein family (UPF0149) CVS42_09120 PF13509 S1 domain CVS42_09125 PF06945 CVS42_09125 CVS42_09125 PF14375 CVS42_09125 CVS42_09130 PF04269 Protein of unknown function, DUF440 CVS42_09135 PF00912 Transglycosylase CVS42_09140 PF04269 Protein of unknown function, DUF440 CVS42_09145 PF03776 Septum formation topological specificity factor MinE CVS42_09150 PF13614 AAA domain CVS42_09155 PF03775 Septum formation inhibitor MinC, C-terminal domain CVS42_09155 PF05209 Septum formation inhibitor MinC, N-terminal domain CVS42_09160 PF05166 YcgL domain CVS42_09165 PF03313 CVS42_09165 CVS42_09165 PF03315 Serine dehydratase beta chain CVS42_09175 PF03313 CVS42_09175 CVS42_09175 PF03315 Serine dehydratase beta chain CVS42_09180 PF06865 Protein of unknown function (DUF1255) CVS42_09185 PF00375 Sodium:dicarboxylate symporter family CVS42_09190 PF00365 Phosphofructokinase CVS42_09195 PF00121 Triosephosphate isomerase CVS42_09200 PF02698 DUF218 domain CVS42_09205 PF13847 Methyltransferase domain CVS42_09210 PF03882 KicB killing factor CVS42_09210 PF17192 CVS42_09210 CVS42_09210 PF17193 CVS42_09210 CVS42_09215 PF04288 MukE-like family CVS42_09220 PF04310 MukB N-terminal CVS42_09220 PF13558 Putative exonuclease SbcCD, C subunit CVS42_09220 PF16330 CVS42_09220 CVS42_09225 PF03330 Rare lipoprotein A (RlpA)-like double-psi beta-barrel CVS42_09230 PF03992 Antibiotic biosynthesis monooxygenase CVS42_09235 PF00583 Acetyltransferase (GNAT) family CVS42_09240 PF01327 Polypeptide deformylase CVS42_09260 PF07819 PGAP1-like protein CVS42_09265 PF09983 CVS42_09265 CVS42_09275 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS42_09275 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS42_09280 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_09285 PF01546 Peptidase family M20/M25/M40 CVS42_09285 PF07687 Peptidase dimerisation domain CVS42_09290 PF01979 Amidohydrolase family CVS42_09295 PF00696 Amino acid kinase family CVS42_09300 PF00892 EamA-like transporter family CVS42_09305 PF02625 XdhC and CoxI family CVS42_09305 PF13478 XdhC Rossmann domain CVS42_09315 PF12804 MobA-like NTP transferase domain CVS42_09320 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_09320 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS42_09325 PF01979 Amidohydrolase family CVS42_09330 PF00941 FAD binding domain in molybdopterin dehydrogenase CVS42_09335 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS42_09335 PF01799 [2Fe-2S] binding domain CVS42_09335 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CVS42_09340 PF00860 Permease family CVS42_09345 PF01979 Amidohydrolase family CVS42_09350 PF00860 Permease family CVS42_09355 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS42_09355 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CVS42_09360 PF00941 FAD binding domain in molybdopterin dehydrogenase CVS42_09360 PF03450 CO dehydrogenase flavoprotein C-terminal domain CVS42_09365 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_09365 PF01799 [2Fe-2S] binding domain CVS42_09370 PF05433 CVS42_09370 CVS42_09380 PF00501 AMP-binding enzyme CVS42_09380 PF13193 AMP-binding enzyme C-terminal domain CVS42_09385 PF00990 GGDEF domain CVS42_09385 PF08448 PAS fold CVS42_09395 PF01502 Phosphoribosyl-AMP cyclohydrolase CVS42_09395 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CVS42_09400 PF00977 Histidine biosynthesis protein CVS42_09405 PF00977 Histidine biosynthesis protein CVS42_09410 PF00117 Glutamine amidotransferase class-I CVS42_09415 PF00475 Imidazoleglycerol-phosphate dehydratase CVS42_09415 PF13242 HAD-hyrolase-like CVS42_09420 PF00155 Aminotransferase class I and II CVS42_09425 PF00815 Histidinol dehydrogenase CVS42_09430 PF01634 ATP phosphoribosyltransferase CVS42_09430 PF08029 HisG, C-terminal domain CVS42_09440 PF00270 DEAD/DEAH box helicase CVS42_09440 PF13307 Helicase C-terminal domain CVS42_09445 PF00814 Glycoprotease family CVS42_09450 PF03843 CVS42_09450 CVS42_09455 PF00561 alpha/beta hydrolase fold CVS42_09460 PF00501 AMP-binding enzyme CVS42_09460 PF13193 AMP-binding enzyme C-terminal domain CVS42_09465 PF00570 HRDC domain CVS42_09465 PF01612 3'-5' exonuclease CVS42_09475 PF00753 Metallo-beta-lactamase superfamily CVS42_09485 PF00586 AIR synthase related protein, N-terminal domain CVS42_09485 PF02769 AIR synthase related protein, C-terminal domain CVS42_09490 PF04245 CVS42_09490 CVS42_09500 PF13737 CVS42_09500 CVS42_09505 PF13673 Acetyltransferase (GNAT) domain CVS42_09510 PF01757 CVS42_09510 CVS42_09515 PF10672 S-adenosylmethionine-dependent methyltransferase CVS42_09520 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_09525 PF00708 Acylphosphatase CVS42_09530 PF05235 CHAD domain CVS42_09535 PF01588 Putative tRNA binding domain CVS42_09535 PF08264 Anticodon-binding domain of tRNA CVS42_09535 PF09334 tRNA synthetases class I (M) CVS42_09540 PF10609 ParA/MinD ATPase like CVS42_09545 PF00485 Phosphoribulokinase / Uridine kinase family CVS42_09550 PF00692 dUTPase CVS42_09555 PF01384 CVS42_09555 CVS42_09560 PF06945 CVS42_09560 CVS42_09565 PF03562 MltA specific insert domain CVS42_09565 PF06725 3D domain CVS42_09570 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_09575 PF00268 Ribonucleotide reductase, small chain CVS42_09580 PF00317 Ribonucleotide reductase, all-alpha domain CVS42_09580 PF02867 Ribonucleotide reductase, barrel domain CVS42_09580 PF03477 ATP cone domain CVS42_09585 PF13419 Haloacid dehalogenase-like hydrolase CVS42_09590 PF13489 Methyltransferase domain CVS42_09595 PF00521 DNA gyrase/topoisomerase IV, subunit A CVS42_09595 PF03989 DNA gyrase C-terminal domain, beta-propeller CVS42_09600 PF00128 Alpha amylase, catalytic domain CVS42_09605 PF04055 Radical SAM superfamily CVS42_09610 PF08238 Sel1 repeat CVS42_09615 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS42_09615 PF02824 TGS domain CVS42_09615 PF03129 Anticodon binding domain CVS42_09615 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVS42_09620 PF00707 Translation initiation factor IF-3, C-terminal domain CVS42_09620 PF05198 Translation initiation factor IF-3, N-terminal domain CVS42_09625 PF01632 Ribosomal protein L35 CVS42_09630 PF00453 Ribosomal protein L20 CVS42_09635 PF01409 tRNA synthetases class II core domain (F) CVS42_09635 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CVS42_09640 PF01588 Putative tRNA binding domain CVS42_09640 PF03147 Ferredoxin-fold anticodon binding domain CVS42_09640 PF03483 B3/4 domain CVS42_09640 PF03484 tRNA synthetase B5 domain CVS42_09645 PF00216 Bacterial DNA-binding protein CVS42_09650 PF00072 Response regulator receiver domain CVS42_09650 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_09650 PF00512 His Kinase A (phospho-acceptor) domain CVS42_09650 PF01627 Hpt domain CVS42_09650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_09650 PF08447 PAS fold CVS42_09655 PF00072 Response regulator receiver domain CVS42_09660 PF00583 Acetyltransferase (GNAT) family CVS42_09665 PF02146 Sir2 family CVS42_09675 PF00990 GGDEF domain CVS42_09680 PF00356 Bacterial regulatory proteins, lacI family CVS42_09680 PF13377 Periplasmic binding protein-like domain CVS42_09685 PF00294 pfkB family carbohydrate kinase CVS42_09690 PF13407 Periplasmic binding protein domain CVS42_09695 PF02653 CVS42_09695 CVS42_09700 PF00005 ABC transporter CVS42_09705 PF05025 RbsD / FucU transport protein family CVS42_09710 PF02798 Glutathione S-transferase, N-terminal domain CVS42_09710 PF13410 Glutathione S-transferase, C-terminal domain CVS42_09720 PF08808 CVS42_09720 CVS42_09725 PF09722 CVS42_09725 CVS42_09730 PF13416 Bacterial extracellular solute-binding protein CVS42_09735 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_09740 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_09745 PF00005 ABC transporter CVS42_09745 PF08402 TOBE domain CVS42_09755 PF11205 CVS42_09755 CVS42_09760 PF01171 PP-loop family CVS42_09765 PF00582 Universal stress protein family CVS42_09770 PF00027 Cyclic nucleotide-binding domain CVS42_09770 PF13545 Crp-like helix-turn-helix domain CVS42_09775 PF13386 CVS42_09775 CVS42_09780 PF03597 CVS42_09780 CVS42_09785 PF00122 E1-E2 ATPase CVS42_09785 PF00403 Heavy-metal-associated domain CVS42_09785 PF00702 haloacid dehalogenase-like hydrolase CVS42_09785 PF12156 CVS42_09785 CVS42_09790 PF05751 CVS42_09790 CVS42_09795 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CVS42_09795 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP CVS42_09800 PF05545 CVS42_09800 CVS42_09805 PF02433 Cytochrome C oxidase, mono-heme subunit/FixO CVS42_09810 PF00115 Cytochrome C and Quinol oxidase polypeptide I CVS42_09820 PF13185 GAF domain CVS42_09825 PF04352 ProQ/FINO family CVS42_09825 PF17516 CVS42_09825 CVS42_09830 PF00595 PDZ domain (Also known as DHR or GLGF) CVS42_09830 PF03572 Peptidase family S41 CVS42_09830 PF11818 CVS42_09830 CVS42_09835 PF01433 Peptidase family M1 CVS42_09835 PF11940 Domain of unknown function (DUF3458) CVS42_09835 PF17432 CVS42_09835 CVS42_09840 PF11197 CVS42_09840 CVS42_09845 PF05088 CVS42_09845 CVS42_09850 PF01180 Dihydroorotate dehydrogenase CVS42_09855 PF07126 CVS42_09855 CVS42_09865 PF01197 Ribosomal protein L31 CVS42_09870 PF00444 Ribosomal protein L36 CVS42_09875 PF01170 Putative RNA methylase family UPF0020 CVS42_09875 PF02926 THUMP domain CVS42_09875 PF10672 S-adenosylmethionine-dependent methyltransferase CVS42_09880 PF05768 Glutaredoxin-like domain (DUF836) CVS42_09885 PF00005 ABC transporter CVS42_09885 PF12848 ABC transporter CVS42_09885 PF16326 CVS42_09885 CVS42_09890 PF04957 Ribosome modulation factor CVS42_09895 PF07977 FabA-like domain CVS42_09900 PF05362 Lon protease (S16) C-terminal proteolytic domain CVS42_09900 PF13654 AAA domain CVS42_09915 PF05840 CVS42_09915 CVS42_09945 PF05707 Zonular occludens toxin (Zot) CVS42_09960 PF12375 CVS42_09960 CVS42_09975 PF00589 Phage integrase family CVS42_09985 PF07130 YebG protein CVS42_09990 PF00561 alpha/beta hydrolase fold CVS42_09995 PF00106 short chain dehydrogenase CVS42_09995 PF07993 Male sterility protein CVS42_10000 PF05597 CVS42_10000 CVS42_10005 PF01734 Patatin-like phospholipase CVS42_10010 PF00440 Bacterial regulatory proteins, tetR family CVS42_10010 PF13972 Bacterial transcriptional repressor CVS42_10020 PF03007 CVS42_10020 CVS42_10020 PF06974 CVS42_10020 CVS42_10025 PF09650 CVS42_10025 CVS42_10035 PF03972 MmgE/PrpD family CVS42_10040 PF00285 Citrate synthase CVS42_10045 PF13714 Phosphoenolpyruvate phosphomutase CVS42_10050 PF04403 CVS42_10050 CVS42_10055 PF04403 CVS42_10055 CVS42_10060 PF02470 CVS42_10060 CVS42_10065 PF01189 NOL1/NOP2/sun family CVS42_10065 PF13636 pre-rRNA processing and ribosome biogenesis CVS42_10065 PF17125 CVS42_10065 CVS42_10070 PF10723 Replication regulatory protein RepB CVS42_10075 PF00589 Phage integrase family CVS42_10080 PF01026 TatD related DNase CVS42_10085 PF09115 DNA polymerase III, delta subunit, C terminal CVS42_10085 PF13177 DNA polymerase III, delta subunit CVS42_10090 PF02223 Thymidylate kinase CVS42_10095 PF02618 YceG-like family CVS42_10100 PF01063 Aminotransferase class IV CVS42_10105 PF00109 Beta-ketoacyl synthase, N-terminal domain CVS42_10105 PF02801 Beta-ketoacyl synthase, C-terminal domain CVS42_10110 PF00550 Phosphopantetheine attachment site CVS42_10115 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_10120 PF00698 Acyl transferase domain CVS42_10125 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVS42_10125 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVS42_10130 PF02504 Fatty acid synthesis protein CVS42_10135 PF01783 Ribosomal L32p protein family CVS42_10140 PF02620 CVS42_10140 CVS42_10145 PF02545 Maf-like protein CVS42_10150 PF13419 Haloacid dehalogenase-like hydrolase CVS42_10155 PF00849 RNA pseudouridylate synthase CVS42_10155 PF01479 S4 domain CVS42_10160 PF00575 S1 RNA binding domain CVS42_10160 PF10150 Ribonuclease E/G family CVS42_10170 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CVS42_10170 PF02378 Phosphotransferase system, EIIC CVS42_10175 PF00294 pfkB family carbohydrate kinase CVS42_10180 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_10180 PF00381 PTS HPr component phosphorylation site CVS42_10185 PF00356 Bacterial regulatory proteins, lacI family CVS42_10185 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS42_10190 PF03222 Tryptophan/tyrosine permease family CVS42_10200 PF01124 MAPEG family CVS42_10215 PF00270 DEAD/DEAH box helicase CVS42_10215 PF00271 Helicase conserved C-terminal domain CVS42_10220 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_10225 PF01264 Chorismate synthase CVS42_10230 PF05175 Methyltransferase small domain CVS42_10235 PF01713 Smr domain CVS42_10240 PF00990 GGDEF domain CVS42_10240 PF08448 PAS fold CVS42_10240 PF13188 PAS domain CVS42_10245 PF00300 Histidine phosphatase superfamily (branch 1) CVS42_10250 PF04828 Glutathione-dependent formaldehyde-activating enzyme CVS42_10255 PF00182 Chitinase class I CVS42_10255 PF02839 Carbohydrate binding domain CVS42_10265 PF13679 CVS42_10265 CVS42_10270 PF03831 PhnA protein CVS42_10275 PF05681 CVS42_10275 CVS42_10275 PF05683 Fumarase C-terminus CVS42_10280 PF00425 chorismate binding enzyme CVS42_10280 PF04715 Anthranilate synthase component I, N terminal region CVS42_10285 PF00293 NUDIX domain CVS42_10290 PF03222 Tryptophan/tyrosine permease family CVS42_10295 PF00375 Sodium:dicarboxylate symporter family CVS42_10305 PF00270 DEAD/DEAH box helicase CVS42_10305 PF00271 Helicase conserved C-terminal domain CVS42_10305 PF16124 CVS42_10305 CVS42_10310 PF06798 CVS42_10310 CVS42_10310 PF08298 PrkA AAA domain CVS42_10315 PF04285 CVS42_10315 CVS42_10320 PF04293 CVS42_10320 CVS42_10325 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_10325 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CVS42_10325 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CVS42_10330 PF00108 Thiolase, N-terminal domain CVS42_10330 PF02803 Thiolase, C-terminal domain CVS42_10335 PF07726 ATPase family associated with various cellular activities (AAA) CVS42_10340 PF01882 CVS42_10340 CVS42_10345 PF14316 CVS42_10345 CVS42_10350 PF00092 von Willebrand factor type A domain CVS42_10355 PF00515 Tetratricopeptide repeat CVS42_10355 PF13519 von Willebrand factor type A domain CVS42_10360 PF13584 CVS42_10360 CVS42_10365 PF04542 Sigma-70 region 2 CVS42_10365 PF08281 Sigma-70, region 4 CVS42_10370 PF11859 CVS42_10370 CVS42_10375 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CVS42_10380 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CVS42_10385 PF00563 EAL domain CVS42_10385 PF08668 HDOD domain CVS42_10390 PF00108 Thiolase, N-terminal domain CVS42_10390 PF02803 Thiolase, C-terminal domain CVS42_10395 PF13411 MerR HTH family regulatory protein CVS42_10400 PF01386 Ribosomal L25p family CVS42_10410 PF00270 DEAD/DEAH box helicase CVS42_10410 PF00271 Helicase conserved C-terminal domain CVS42_10410 PF04408 Helicase associated domain (HA2) CVS42_10410 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CVS42_10410 PF11898 CVS42_10410 CVS42_10415 PF00571 CBS domain CVS42_10420 PF01966 HD domain CVS42_10425 PF00884 Sulfatase CVS42_10430 PF07726 ATPase family associated with various cellular activities (AAA) CVS42_10435 PF01882 CVS42_10435 CVS42_10440 PF14316 CVS42_10440 CVS42_10445 PF00092 von Willebrand factor type A domain CVS42_10450 PF13519 von Willebrand factor type A domain CVS42_10460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_10460 PF03466 LysR substrate binding domain CVS42_10465 PF03781 Sulfatase-modifying factor enzyme 1 CVS42_10475 PF04055 Radical SAM superfamily CVS42_10475 PF13186 Iron-sulfur cluster-binding domain CVS42_10480 PF00929 Exonuclease CVS42_10480 PF08411 Exonuclease C-terminal CVS42_10490 PF02065 Melibiase CVS42_10495 PF03788 CVS42_10495 CVS42_10500 PF04172 CVS42_10500 CVS42_10505 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVS42_10505 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CVS42_10510 PF01212 Beta-eliminating lyase CVS42_10515 PF10013 CVS42_10515 CVS42_10520 PF04244 Deoxyribodipyrimidine photo-lyase-related protein CVS42_10525 PF01266 FAD dependent oxidoreductase CVS42_10530 PF01118 Semialdehyde dehydrogenase, NAD binding domain CVS42_10530 PF02774 Semialdehyde dehydrogenase, dimerisation domain CVS42_10535 PF02634 FdhD/NarQ family CVS42_10540 PF00158 Sigma-54 interaction domain CVS42_10540 PF02954 Bacterial regulatory protein, Fis family CVS42_10540 PF13185 GAF domain CVS42_10555 PF12838 4Fe-4S dicluster domain CVS42_10565 PF04607 Region found in RelA / SpoT proteins CVS42_10570 PF00583 Acetyltransferase (GNAT) family CVS42_10580 PF02705 CVS42_10580 CVS42_10585 PF00037 4Fe-4S binding domain CVS42_10585 PF12798 4Fe-4S binding domain CVS42_10585 PF12837 4Fe-4S binding domain CVS42_10590 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CVS42_10590 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CVS42_10595 PF00146 NADH dehydrogenase CVS42_10600 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CVS42_10600 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CVS42_10600 PF00374 Nickel-dependent hydrogenase CVS42_10605 PF12838 4Fe-4S dicluster domain CVS42_10610 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS42_10615 PF07450 CVS42_10615 CVS42_10620 PF01750 Hydrogenase maturation protease CVS42_10625 PF03841 L-seryl-tRNA selenium transferase CVS42_10625 PF12390 CVS42_10625 CVS42_10630 PF00009 Elongation factor Tu GTP binding domain CVS42_10630 PF03144 Elongation factor Tu domain 2 CVS42_10630 PF09107 Elongation factor SelB, winged helix CVS42_10635 PF00708 Acylphosphatase CVS42_10635 PF01300 Telomere recombination CVS42_10635 PF07503 HypF finger CVS42_10640 PF01455 HupF/HypC family CVS42_10645 PF01924 Hydrogenase formation hypA family CVS42_10650 PF00586 AIR synthase related protein, N-terminal domain CVS42_10650 PF02769 AIR synthase related protein, C-terminal domain CVS42_10655 PF01155 Hydrogenase expression/synthesis hypA family CVS42_10660 PF02492 CobW/HypB/UreG, nucleotide-binding domain CVS42_10665 PF00005 ABC transporter CVS42_10670 PF00005 ABC transporter CVS42_10675 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_10680 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_10685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_10690 PF11939 Protein of unknown function (DUF3457) CVS42_10695 PF01750 Hydrogenase maturation protease CVS42_10700 PF00374 Nickel-dependent hydrogenase CVS42_10710 PF13247 4Fe-4S dicluster domain CVS42_10715 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS42_10715 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal CVS42_10720 PF00990 GGDEF domain CVS42_10720 PF13474 SnoaL-like domain CVS42_10725 PF00534 Glycosyl transferases group 1 CVS42_10730 PF00534 Glycosyl transferases group 1 CVS42_10730 PF13439 Glycosyltransferase Family 4 CVS42_10735 PF04932 CVS42_10735 CVS42_10740 PF13440 CVS42_10740 CVS42_10745 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_10750 PF13692 Glycosyl transferases group 1 CVS42_10775 PF06707 Protein of unknown function (DUF1194) CVS42_10790 PF02706 Chain length determinant protein CVS42_10790 PF13807 CVS42_10790 CVS42_10795 PF00534 Glycosyl transferases group 1 CVS42_10795 PF13439 Glycosyltransferase Family 4 CVS42_10800 PF13641 Glycosyltransferase like family 2 CVS42_10805 PF02397 CVS42_10805 CVS42_10810 PF00534 Glycosyl transferases group 1 CVS42_10810 PF13439 Glycosyltransferase Family 4 CVS42_10815 PF00072 Response regulator receiver domain CVS42_10815 PF07228 Stage II sporulation protein E (SpoIIE) CVS42_10815 PF13581 Histidine kinase-like ATPase domain CVS42_10825 PF02563 Polysaccharide biosynthesis/export protein CVS42_10825 PF10531 SLBB domain CVS42_10835 PF01740 STAS domain CVS42_10840 PF00174 Oxidoreductase molybdopterin binding domain CVS42_10845 PF00072 Response regulator receiver domain CVS42_10845 PF00512 His Kinase A (phospho-acceptor) domain CVS42_10845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_10860 PF01925 CVS42_10860 CVS42_10865 PF13520 Amino acid permease CVS42_10875 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_10880 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CVS42_10880 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CVS42_10885 PF16113 CVS42_10885 CVS42_10890 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_10895 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS42_10895 PF02770 Acyl-CoA dehydrogenase, middle domain CVS42_10895 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS42_10900 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CVS42_10900 PF02770 Acyl-CoA dehydrogenase, middle domain CVS42_10900 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CVS42_10905 PF01039 Carboxyl transferase domain CVS42_10910 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_10915 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CVS42_10915 PF00364 Biotin-requiring enzyme CVS42_10915 PF02785 Biotin carboxylase C-terminal domain CVS42_10915 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS42_10920 PF00682 HMGL-like CVS42_10925 PF13411 MerR HTH family regulatory protein CVS42_10930 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_10935 PF05359 CVS42_10935 CVS42_10940 PF01184 CVS42_10940 CVS42_10960 PF06167 Glucose-regulated metallo-peptidase M90 CVS42_10965 PF00583 Acetyltransferase (GNAT) family CVS42_10970 PF01235 CVS42_10970 CVS42_10975 PF00589 Phage integrase family CVS42_10985 PF06114 Domain of unknown function (DUF955) CVS42_10995 PF00717 Peptidase S24-like CVS42_10995 PF01381 Helix-turn-helix CVS42_11000 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_11005 PF00027 Cyclic nucleotide-binding domain CVS42_11005 PF03445 CVS42_11005 CVS42_11005 PF10335 CVS42_11005 CVS42_11010 PF00929 Exonuclease CVS42_11015 PF04341 CVS42_11015 CVS42_11020 PF00474 Sodium:solute symporter family CVS42_11025 PF02661 Fic/DOC family CVS42_11070 PF09327 CVS42_11070 CVS42_11070 PF12421 CVS42_11070 CVS42_11085 PF00665 Integrase core domain CVS42_11090 PF01695 IstB-like ATP binding protein CVS42_11090 PF08483 CVS42_11090 CVS42_11100 PF00717 Peptidase S24-like CVS42_11105 PF11686 CVS42_11105 CVS42_11115 PF00816 H-NS histone family CVS42_11120 PF05488 PAAR motif CVS42_11140 PF10746 CVS42_11140 CVS42_11145 PF00959 Phage lysozyme CVS42_11150 PF10721 CVS42_11150 CVS42_11185 PF13252 CVS42_11185 CVS42_11210 PF08400 CVS42_11210 CVS42_11220 PF01695 IstB-like ATP binding protein CVS42_11220 PF08483 CVS42_11220 CVS42_11225 PF00665 Integrase core domain CVS42_11250 PF07102 Protein of unknown function (DUF1364) CVS42_11255 PF07105 CVS42_11255 CVS42_11275 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_11330 PF13443 Cro/C1-type HTH DNA-binding domain CVS42_11340 PF07670 Nucleoside recognition CVS42_11345 PF01381 Helix-turn-helix CVS42_11355 PF12684 PDDEXK-like domain of unknown function (DUF3799) CVS42_11360 PF03837 CVS42_11360 CVS42_11385 PF00589 Phage integrase family CVS42_11385 PF12167 CVS42_11385 CVS42_11390 PF00005 ABC transporter CVS42_11390 PF12848 ABC transporter CVS42_11395 PF13616 PPIC-type PPIASE domain CVS42_11395 PF13624 SurA N-terminal domain CVS42_11400 PF00216 Bacterial DNA-binding protein CVS42_11405 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_11405 PF02190 ATP-dependent protease La (LON) domain CVS42_11405 PF05362 Lon protease (S16) C-terminal proteolytic domain CVS42_11410 PF06689 ClpX C4-type zinc finger CVS42_11410 PF07724 AAA domain (Cdc48 subfamily) CVS42_11410 PF10431 C-terminal, D2-small domain, of ClpB protein CVS42_11415 PF00574 Clp protease CVS42_11420 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_11420 PF05697 Bacterial trigger factor protein (TF) CVS42_11420 PF05698 Bacterial trigger factor protein (TF) C-terminus CVS42_11430 PF03733 CVS42_11430 CVS42_11435 PF13023 HD domain CVS42_11440 PF02687 CVS42_11440 CVS42_11440 PF12704 MacB-like periplasmic core domain CVS42_11445 PF00005 ABC transporter CVS42_11450 PF02687 CVS42_11450 CVS42_11450 PF12704 MacB-like periplasmic core domain CVS42_11460 PF00270 DEAD/DEAH box helicase CVS42_11460 PF00271 Helicase conserved C-terminal domain CVS42_11460 PF02559 CarD-like/TRCF domain CVS42_11460 PF03461 TRCF domain CVS42_11465 PF00316 Fructose-1-6-bisphosphatase CVS42_11470 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_11475 PF00892 EamA-like transporter family CVS42_11480 PF06526 Protein of unknown function (DUF1107) CVS42_11485 PF00300 Histidine phosphatase superfamily (branch 1) CVS42_11490 PF00675 Insulinase (Peptidase family M16) CVS42_11490 PF05193 Peptidase M16 inactive domain CVS42_11490 PF16187 CVS42_11490 CVS42_11495 PF05724 Thiopurine S-methyltransferase (TPMT) CVS42_11500 PF07714 Protein tyrosine kinase CVS42_11500 PF13855 Leucine rich repeat CVS42_11505 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_11515 PF07693 CVS42_11515 CVS42_11525 PF00117 Glutamine amidotransferase class-I CVS42_11525 PF00958 GMP synthase C terminal domain CVS42_11525 PF02540 NAD synthase CVS42_11530 PF00478 IMP dehydrogenase / GMP reductase domain CVS42_11530 PF00571 CBS domain CVS42_11535 PF06519 TolA C-terminal CVS42_11540 PF02601 CVS42_11540 CVS42_11540 PF13742 CVS42_11540 CVS42_11550 PF01820 D-ala D-ala ligase N-terminus CVS42_11550 PF07478 D-ala D-ala ligase C-terminus CVS42_11555 PF13640 2OG-Fe(II) oxygenase superfamily CVS42_11560 PF00255 Glutathione peroxidase CVS42_11565 PF00270 DEAD/DEAH box helicase CVS42_11565 PF00271 Helicase conserved C-terminal domain CVS42_11570 PF04055 Radical SAM superfamily CVS42_11575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_11575 PF00672 HAMP domain CVS42_11580 PF00793 DAHP synthetase I family CVS42_11585 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVS42_11590 PF00266 Aminotransferase class-V CVS42_11595 PF00766 Electron transfer flavoprotein FAD-binding domain CVS42_11595 PF01012 Electron transfer flavoprotein domain CVS42_11600 PF01012 Electron transfer flavoprotein domain CVS42_11605 PF01946 Thi4 family CVS42_11605 PF05187 Electron transfer flavoprotein-ubiquinone oxidoreductase CVS42_11610 PF01544 CorA-like Mg2+ transporter protein CVS42_11615 PF11143 CVS42_11615 CVS42_11625 PF07273 Protein of unknown function (DUF1439) CVS42_11635 PF00483 Nucleotidyl transferase CVS42_11640 PF00563 EAL domain CVS42_11640 PF00990 GGDEF domain CVS42_11650 PF11042 CVS42_11650 CVS42_11655 PF00294 pfkB family carbohydrate kinase CVS42_11660 PF01124 MAPEG family CVS42_11665 PF00762 Ferrochelatase CVS42_11670 PF00406 Adenylate kinase CVS42_11670 PF05191 Adenylate kinase, active site lid CVS42_11675 PF06175 tRNA-(MS[2]IO[6]A)-hydroxylase (MiaE) CVS42_11680 PF00156 Phosphoribosyl transferase domain CVS42_11680 PF13522 Glutamine amidotransferase domain CVS42_11685 PF02674 CVS42_11685 CVS42_11690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CVS42_11690 PF02403 Seryl-tRNA synthetase N-terminal domain CVS42_11695 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_11695 PF12002 MgsA AAA+ ATPase C terminal CVS42_11695 PF16193 CVS42_11695 CVS42_11700 PF03548 Outer membrane lipoprotein carrier protein LolA CVS42_11705 PF01580 FtsK/SpoIIIE family CVS42_11705 PF09397 Ftsk gamma domain CVS42_11705 PF13491 CVS42_11705 CVS42_11710 PF01037 AsnC family CVS42_11710 PF13412 Winged helix-turn-helix DNA-binding CVS42_11715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CVS42_11715 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CVS42_11720 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_11725 PF00072 Response regulator receiver domain CVS42_11725 PF00990 GGDEF domain CVS42_11730 PF05433 CVS42_11730 CVS42_11735 PF03588 Leucyl/phenylalanyl-tRNA protein transferase CVS42_11740 PF04376 CVS42_11740 CVS42_11740 PF04377 CVS42_11740 CVS42_11745 PF01176 Translation initiation factor 1A / IF-1 CVS42_11750 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_11750 PF02861 Clp amino terminal domain CVS42_11750 PF07724 AAA domain (Cdc48 subfamily) CVS42_11750 PF10431 C-terminal, D2-small domain, of ClpB protein CVS42_11755 PF02617 ATP-dependent Clp protease adaptor protein ClpS CVS42_11760 PF00313 'Cold-shock' DNA-binding domain CVS42_11765 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CVS42_11765 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CVS42_11785 PF00072 Response regulator receiver domain CVS42_11785 PF00486 Transcriptional regulatory protein, C terminal CVS42_11790 PF00512 His Kinase A (phospho-acceptor) domain CVS42_11790 PF00672 HAMP domain CVS42_11790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_11800 PF03706 CVS42_11800 CVS42_11800 PF09924 Uncharacterized conserved protein (DUF2156) CVS42_11805 PF06057 Bacterial virulence protein (VirJ) CVS42_11815 PF08238 Sel1 repeat CVS42_11830 PF10722 Putative bacterial sensory transduction regulator CVS42_11835 PF08014 CVS42_11835 CVS42_11840 PF00265 Thymidine kinase CVS42_11845 PF03553 CVS42_11845 CVS42_11850 PF00816 H-NS histone family CVS42_11855 PF01923 Cobalamin adenosyltransferase CVS42_11860 PF12843 CVS42_11860 CVS42_11865 PF04055 Radical SAM superfamily CVS42_11865 PF13394 4Fe-4S single cluster domain CVS42_11870 PF06508 Queuosine biosynthesis protein QueC CVS42_11875 PF03942 CVS42_11875 CVS42_11880 PF01694 Rhomboid family CVS42_11885 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CVS42_11890 PF13176 Tetratricopeptide repeat CVS42_11890 PF14559 Tetratricopeptide repeat CVS42_11895 PF06305 CVS42_11895 CVS42_11900 PF00216 Bacterial DNA-binding protein CVS42_11905 PF00575 S1 RNA binding domain CVS42_11910 PF02224 Cytidylate kinase CVS42_11915 PF00925 GTP cyclohydrolase II CVS42_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_11920 PF03466 LysR substrate binding domain CVS42_11925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_11925 PF03466 LysR substrate binding domain CVS42_11930 PF07690 Major Facilitator Superfamily CVS42_11935 PF06185 YecM protein CVS42_11945 PF00881 Nitroreductase family CVS42_11950 PF03806 CVS42_11950 CVS42_11955 PF00563 EAL domain CVS42_11955 PF00990 GGDEF domain CVS42_11960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_11960 PF03466 LysR substrate binding domain CVS42_11965 PF00072 Response regulator receiver domain CVS42_11970 PF08448 PAS fold CVS42_11975 PF01212 Beta-eliminating lyase CVS42_11990 PF00248 Aldo/keto reductase family CVS42_11995 PF00076 RNA recognition motif CVS42_12005 PF00005 ABC transporter CVS42_12010 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_12015 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_12020 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_12025 PF03411 Penicillin-insensitive murein endopeptidase CVS42_12030 PF04011 LemA family CVS42_12035 PF04536 TLP18 CVS42_12040 PF04536 TLP18 CVS42_12060 PF02146 Sir2 family CVS42_12070 PF01618 CVS42_12070 CVS42_12075 PF00691 OmpA family CVS42_12075 PF13677 CVS42_12075 CVS42_12080 PF00593 TonB dependent receptor CVS42_12080 PF07715 TonB-dependent Receptor Plug Domain CVS42_12085 PF00326 Prolyl oligopeptidase family CVS42_12085 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CVS42_12090 PF01483 Proprotein convertase P-domain CVS42_12095 PF07603 CVS42_12095 CVS42_12100 PF07603 CVS42_12100 CVS42_12105 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CVS42_12110 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CVS42_12115 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CVS42_12115 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CVS42_12120 PF01257 Thioredoxin-like [2Fe-2S] ferredoxin CVS42_12125 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVS42_12125 PF10531 SLBB domain CVS42_12125 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS42_12130 PF00384 Molybdopterin oxidoreductase CVS42_12130 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CVS42_12130 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS42_12130 PF13510 2Fe-2S iron-sulfur cluster binding domain CVS42_12135 PF00146 NADH dehydrogenase CVS42_12140 PF12838 4Fe-4S dicluster domain CVS42_12145 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CVS42_12150 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CVS42_12155 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CVS42_12155 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CVS42_12160 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CVS42_12165 PF00361 NADH-Ubiquinone/plastoquinone (complex I), various chains CVS42_12170 PF08495 CVS42_12170 CVS42_12170 PF10442 CVS42_12170 CVS42_12175 PF08448 PAS fold CVS42_12175 PF13487 HD domain CVS42_12180 PF08448 PAS fold CVS42_12180 PF13487 HD domain CVS42_12185 PF00563 EAL domain CVS42_12185 PF00990 GGDEF domain CVS42_12205 PF00563 EAL domain CVS42_12205 PF00990 GGDEF domain CVS42_12205 PF16448 CVS42_12205 CVS42_12210 PF06035 Bacterial transglutaminase-like cysteine proteinase BTLCP CVS42_12215 PF02321 Outer membrane efflux protein CVS42_12220 PF13437 HlyD family secretion protein CVS42_12220 PF13533 Biotin-lipoyl like CVS42_12225 PF00005 ABC transporter CVS42_12225 PF00664 ABC transporter transmembrane region CVS42_12230 PF04055 Radical SAM superfamily CVS42_12230 PF16199 CVS42_12230 CVS42_12235 PF00310 Glutamine amidotransferases class-II CVS42_12235 PF01493 GXGXG motif CVS42_12235 PF01645 Conserved region in glutamate synthase CVS42_12235 PF04898 Glutamate synthase central domain CVS42_12240 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_12240 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS42_12245 PF12680 SnoaL-like domain CVS42_12250 PF01596 O-methyltransferase CVS42_12255 PF00270 DEAD/DEAH box helicase CVS42_12255 PF00271 Helicase conserved C-terminal domain CVS42_12260 PF11140 CVS42_12260 CVS42_12265 PF09012 FeoC like transcriptional regulator CVS42_12270 PF02421 Ferrous iron transport protein B CVS42_12270 PF07664 CVS42_12270 CVS42_12270 PF07670 Nucleoside recognition CVS42_12275 PF04023 FeoA domain CVS42_12280 PF01253 Translation initiation factor SUI1 CVS42_12285 PF01169 CVS42_12285 CVS42_12290 PF09925 CVS42_12290 CVS42_12295 PF14351 CVS42_12295 CVS42_12300 PF14345 CVS42_12300 CVS42_12305 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_12310 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_12315 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_12325 PF00271 Helicase conserved C-terminal domain CVS42_12325 PF04851 Type III restriction enzyme, res subunit CVS42_12330 PF01406 tRNA synthetases class I (C) catalytic domain CVS42_12330 PF09190 DALR domain CVS42_12335 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CVS42_12340 PF14091 CVS42_12340 CVS42_12345 PF00149 Calcineurin-like phosphoesterase CVS42_12350 PF04226 CVS42_12350 CVS42_12355 PF00512 His Kinase A (phospho-acceptor) domain CVS42_12355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_12355 PF08521 CVS42_12355 CVS42_12360 PF00072 Response regulator receiver domain CVS42_12360 PF00486 Transcriptional regulatory protein, C terminal CVS42_12365 PF03401 Tripartite tricarboxylate transporter family receptor CVS42_12370 PF07331 CVS42_12370 CVS42_12375 PF01970 CVS42_12375 CVS42_12385 PF00589 Phage integrase family CVS42_12405 PF01066 CDP-alcohol phosphatidyltransferase CVS42_12410 PF01541 GIY-YIG catalytic domain CVS42_12410 PF02151 UvrB/uvrC motif CVS42_12410 PF08459 UvrC Helix-hairpin-helix N-terminal CVS42_12410 PF14520 Helix-hairpin-helix domain CVS42_12415 PF00072 Response regulator receiver domain CVS42_12415 PF00196 Bacterial regulatory proteins, luxR family CVS42_12420 PF02348 Cytidylyltransferase CVS42_12425 PF03966 Trm112p-like protein CVS42_12430 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CVS42_12435 PF00005 ABC transporter CVS42_12435 PF00664 ABC transporter transmembrane region CVS42_12440 PF00753 Metallo-beta-lactamase superfamily CVS42_12440 PF03772 CVS42_12440 CVS42_12440 PF13567 CVS42_12440 CVS42_12445 PF09835 CVS42_12445 CVS42_12450 PF09835 CVS42_12450 CVS42_12455 PF00155 Aminotransferase class I and II CVS42_12465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_12465 PF03466 LysR substrate binding domain CVS42_12470 PF04219 CVS42_12470 CVS42_12475 PF03974 Ecotin CVS42_12480 PF03009 Glycerophosphoryl diester phosphodiesterase family CVS42_12485 PF01266 FAD dependent oxidoreductase CVS42_12485 PF16901 CVS42_12485 CVS42_12490 PF00455 CVS42_12490 CVS42_12490 PF08220 DeoR-like helix-turn-helix domain CVS42_12495 PF07690 Major Facilitator Superfamily CVS42_12500 PF00230 Major intrinsic protein CVS42_12505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CVS42_12505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CVS42_12510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_12510 PF00672 HAMP domain CVS42_12510 PF02743 Cache domain CVS42_12525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_12525 PF03466 LysR substrate binding domain CVS42_12535 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_12545 PF03992 Antibiotic biosynthesis monooxygenase CVS42_12550 PF00248 Aldo/keto reductase family CVS42_12555 PF12710 haloacid dehalogenase-like hydrolase CVS42_12560 PF07690 Major Facilitator Superfamily CVS42_12565 PF02525 Flavodoxin-like fold CVS42_12570 PF07681 CVS42_12570 CVS42_12575 PF09836 Uncharacterized protein conserved in bacteria (DUF2063) CVS42_12580 PF05114 Protein of unknown function (DUF692) CVS42_12590 PF12706 Beta-lactamase superfamily domain CVS42_12595 PF08173 CVS42_12595 CVS42_12600 PF02322 CVS42_12600 CVS42_12605 PF01654 CVS42_12605 CVS42_12610 PF00155 Aminotransferase class I and II CVS42_12610 PF00392 Bacterial regulatory proteins, gntR family CVS42_12615 PF00583 Acetyltransferase (GNAT) family CVS42_12620 PF04391 CVS42_12620 CVS42_12625 PF03061 Thioesterase superfamily CVS42_12630 PF10689 CVS42_12630 CVS42_12635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_12635 PF03466 LysR substrate binding domain CVS42_12640 PF07690 Major Facilitator Superfamily CVS42_12645 PF00849 RNA pseudouridylate synthase CVS42_12645 PF01479 S4 domain CVS42_12650 PF12146 Putative lysophospholipase CVS42_12655 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_12665 PF01844 HNH endonuclease CVS42_12670 PF02508 CVS42_12670 CVS42_12675 PF04060 Putative Fe-S cluster CVS42_12675 PF14697 4Fe-4S dicluster domain CVS42_12680 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CVS42_12680 PF10531 SLBB domain CVS42_12680 PF12838 4Fe-4S dicluster domain CVS42_12680 PF13375 RnfC Barrel sandwich hybrid domain CVS42_12685 PF03116 CVS42_12685 CVS42_12690 PF04205 FMN-binding domain CVS42_12695 PF02508 CVS42_12695 CVS42_12700 PF00633 Helix-hairpin-helix motif CVS42_12700 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS42_12700 PF10576 Iron-sulfur binding domain of endonuclease III CVS42_12705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_12710 PF00691 OmpA family CVS42_12715 PF03797 Autotransporter beta-domain CVS42_12730 PF01396 CVS42_12730 CVS42_12730 PF08378 CVS42_12730 CVS42_12735 PF07759 CVS42_12735 CVS42_12740 PF02142 MGS-like domain CVS42_12740 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS42_12740 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CVS42_12745 PF00117 Glutamine amidotransferase class-I CVS42_12745 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CVS42_12750 PF01113 Dihydrodipicolinate reductase, N-terminus CVS42_12750 PF05173 Dihydrodipicolinate reductase, C-terminus CVS42_12755 PF12146 Putative lysophospholipase CVS42_12760 PF03553 CVS42_12760 CVS42_12765 PF01812 5-formyltetrahydrofolate cyclo-ligase family CVS42_12770 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CVS42_12775 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CVS42_12775 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CVS42_12780 PF01219 Prokaryotic diacylglycerol kinase CVS42_12785 PF00793 DAHP synthetase I family CVS42_12790 PF00005 ABC transporter CVS42_12795 PF01032 FecCD transport family CVS42_12800 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_12805 PF04342 CVS42_12805 CVS42_12810 PF00437 Type II/IV secretion system protein CVS42_12815 PF04191 Phospholipid methyltransferase CVS42_12820 PF00842 Alanine racemase, C-terminal domain CVS42_12820 PF01168 Alanine racemase, N-terminal domain CVS42_12825 PF03741 CVS42_12825 CVS42_12830 PF00005 ABC transporter CVS42_12830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_12835 PF00005 ABC transporter CVS42_12835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_12840 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_12840 PF12911 CVS42_12840 CVS42_12845 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_12850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_12855 PF01914 CVS42_12855 CVS42_12860 PF00171 Aldehyde dehydrogenase family CVS42_12860 PF00465 Iron-containing alcohol dehydrogenase CVS42_12865 PF01709 Transcriptional regulator CVS42_12870 PF00152 tRNA synthetases class II (D, K and N) CVS42_12870 PF01336 OB-fold nucleic acid binding domain CVS42_12870 PF02938 GAD domain CVS42_12875 PF09723 CVS42_12875 CVS42_12880 PF01904 Protein of unknown function DUF72 CVS42_12885 PF13649 Methyltransferase domain CVS42_12890 PF08003 Protein of unknown function (DUF1698) CVS42_12895 PF05618 Putative ATP-dependant zinc protease CVS42_12900 PF14400 CVS42_12900 CVS42_12900 PF14402 CVS42_12900 CVS42_12905 PF14397 CVS42_12905 CVS42_12910 PF12762 CVS42_12910 CVS42_12910 PF13384 Homeodomain-like domain CVS42_12920 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_12920 PF00672 HAMP domain CVS42_12920 PF12729 CVS42_12920 CVS42_12925 PF02535 CVS42_12925 CVS42_12930 PF01048 Phosphorylase superfamily CVS42_12935 PF03186 CVS42_12935 CVS42_12940 PF01497 Periplasmic binding protein CVS42_12945 PF02719 Polysaccharide biosynthesis protein CVS42_12950 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CVS42_12955 PF13578 Methyltransferase domain CVS42_12960 PF13522 Glutamine amidotransferase domain CVS42_12965 PF00733 Asparagine synthase CVS42_12970 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CVS42_12970 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CVS42_12970 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CVS42_12975 PF02350 UDP-N-acetylglucosamine 2-epimerase CVS42_12980 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CVS42_12985 PF08889 CVS42_12985 CVS42_12990 PF00551 Formyl transferase CVS42_12995 PF07429 CVS42_12995 CVS42_13000 PF08241 Methyltransferase domain CVS42_13005 PF00733 Asparagine synthase CVS42_13005 PF13537 Glutamine amidotransferase domain CVS42_13010 PF00534 Glycosyl transferases group 1 CVS42_13015 PF00534 Glycosyl transferases group 1 CVS42_13015 PF13439 Glycosyltransferase Family 4 CVS42_13020 PF11380 CVS42_13020 CVS42_13020 PF17101 CVS42_13020 CVS42_13025 PF03275 UDP-galactopyranose mutase CVS42_13025 PF13450 NAD(P)-binding Rossmann-like domain CVS42_13030 PF00535 Glycosyl transferase family 2 CVS42_13035 PF05893 Acyl-CoA reductase (LuxC) CVS42_13040 PF04443 CVS42_13040 CVS42_13045 PF00501 AMP-binding enzyme CVS42_13050 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_13055 PF00550 Phosphopantetheine attachment site CVS42_13060 PF13302 Acetyltransferase (GNAT) domain CVS42_13065 PF02348 Cytidylyltransferase CVS42_13070 PF04101 Glycosyltransferase family 28 C-terminal domain CVS42_13075 PF03102 NeuB family CVS42_13075 PF08666 SAF domain CVS42_13080 PF01973 CVS42_13080 CVS42_13095 PF09940 Domain of unknown function (DUF2172) CVS42_13095 PF16221 CVS42_13095 CVS42_13095 PF16254 CVS42_13095 CVS42_13100 PF13669 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_13105 PF02522 Aminoglycoside 3-N-acetyltransferase CVS42_13120 PF01973 CVS42_13120 CVS42_13130 PF02561 Flagellar protein FliS CVS42_13135 PF02465 CVS42_13135 CVS42_13135 PF07195 CVS42_13135 CVS42_13135 PF07196 Flagellin hook IN motif CVS42_13140 PF03646 FlaG protein CVS42_13145 PF00669 Bacterial flagellin N-terminal helical region CVS42_13145 PF00700 Bacterial flagellin C-terminal helical region CVS42_13150 PF00669 Bacterial flagellin N-terminal helical region CVS42_13150 PF00700 Bacterial flagellin C-terminal helical region CVS42_13155 PF03458 CVS42_13155 CVS42_13165 PF02568 Thiamine biosynthesis protein (ThiI) CVS42_13165 PF02926 THUMP domain CVS42_13180 PF00905 Penicillin binding protein transpeptidase domain CVS42_13180 PF00912 Transglycosylase CVS42_13180 PF06832 CVS42_13180 CVS42_13185 PF00207 Alpha-2-macroglobulin family CVS42_13185 PF01835 MG2 domain CVS42_13185 PF07703 Alpha-2-macroglobulin family N-terminal region CVS42_13185 PF11974 Alpha-2-macroglobulin MG1 domain CVS42_13190 PF09335 CVS42_13190 CVS42_13195 PF00581 Rhodanese-like domain CVS42_13195 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS42_13195 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_13200 PF00563 EAL domain CVS42_13200 PF00990 GGDEF domain CVS42_13200 PF01590 GAF domain CVS42_13200 PF13426 PAS domain CVS42_13205 PF04055 Radical SAM superfamily CVS42_13205 PF13353 4Fe-4S single cluster domain CVS42_13210 PF01891 Cobalt uptake substrate-specific transmembrane region CVS42_13215 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_13220 PF05728 Uncharacterised protein family (UPF0227) CVS42_13225 PF00860 Permease family CVS42_13230 PF01432 Peptidase family M3 CVS42_13230 PF08439 Oligopeptidase F CVS42_13235 PF05661 CVS42_13235 CVS42_13240 PF06041 Bacterial protein of unknown function (DUF924) CVS42_13245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_13245 PF12729 CVS42_13245 CVS42_13250 PF00375 Sodium:dicarboxylate symporter family CVS42_13265 PF01979 Amidohydrolase family CVS42_13270 PF01242 6-pyruvoyl tetrahydropterin synthase CVS42_13275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_13275 PF00672 HAMP domain CVS42_13280 PF01230 HIT domain CVS42_13290 PF07233 Protein of unknown function (DUF1425) CVS42_13295 PF13036 Protein of unknown function (DUF3897) CVS42_13300 PF01636 Phosphotransferase enzyme family CVS42_13315 PF02355 Protein export membrane protein CVS42_13315 PF07549 SecD/SecF GG Motif CVS42_13315 PF13721 SecD export protein N-terminal TM region CVS42_13320 PF02355 Protein export membrane protein CVS42_13320 PF07549 SecD/SecF GG Motif CVS42_13325 PF00483 Nucleotidyl transferase CVS42_13330 PF00793 DAHP synthetase I family CVS42_13335 PF01817 Chorismate mutase type II CVS42_13335 PF02153 Prephenate dehydrogenase CVS42_13340 PF13609 Gram-negative porin CVS42_13345 PF06733 DEAD_2 CVS42_13345 PF13307 Helicase C-terminal domain CVS42_13350 PF09829 CVS42_13350 CVS42_13355 PF00850 Histone deacetylase domain CVS42_13360 PF01926 50S ribosome-binding GTPase CVS42_13365 PF00245 Alkaline phosphatase CVS42_13370 PF00245 Alkaline phosphatase CVS42_13380 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_13385 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS42_13385 PF14760 Rnk N-terminus CVS42_13390 PF00072 Response regulator receiver domain CVS42_13390 PF00196 Bacterial regulatory proteins, luxR family CVS42_13395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_13395 PF05231 CVS42_13395 CVS42_13395 PF07730 Histidine kinase CVS42_13400 PF07690 Major Facilitator Superfamily CVS42_13405 PF00990 GGDEF domain CVS42_13410 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_13415 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_13420 PF00005 ABC transporter CVS42_13425 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_13430 PF04116 CVS42_13430 CVS42_13435 PF13520 Amino acid permease CVS42_13440 PF02574 Homocysteine S-methyltransferase CVS42_13450 PF00571 CBS domain CVS42_13450 PF01595 CVS42_13450 CVS42_13450 PF03471 Transporter associated domain CVS42_13455 PF01895 PhoU domain CVS42_13460 PF00005 ABC transporter CVS42_13465 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_13470 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_13475 PF14437 CVS42_13475 CVS42_13485 PF01274 Malate synthase CVS42_13490 PF00463 Isocitrate lyase family CVS42_13495 PF00308 Bacterial dnaA protein CVS42_13500 PF09839 CVS42_13500 CVS42_13505 PF14681 Uracil phosphoribosyltransferase CVS42_13510 PF00586 AIR synthase related protein, N-terminal domain CVS42_13510 PF02769 AIR synthase related protein, C-terminal domain CVS42_13515 PF00551 Formyl transferase CVS42_13520 PF01784 NIF3 (NGG1p interacting factor 3) CVS42_13525 PF00072 Response regulator receiver domain CVS42_13525 PF00158 Sigma-54 interaction domain CVS42_13525 PF02954 Bacterial regulatory protein, Fis family CVS42_13530 PF00512 His Kinase A (phospho-acceptor) domain CVS42_13530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_13530 PF13188 PAS domain CVS42_13535 PF00158 Sigma-54 interaction domain CVS42_13535 PF02954 Bacterial regulatory protein, Fis family CVS42_13535 PF06490 CVS42_13535 CVS42_13540 PF01396 CVS42_13540 CVS42_13540 PF10881 CVS42_13540 CVS42_13545 PF13740 ACT domain CVS42_13550 PF02503 Polyphosphate kinase middle domain CVS42_13550 PF13089 Polyphosphate kinase N-terminal domain CVS42_13550 PF13090 Polyphosphate kinase C-terminal domain CVS42_13555 PF02541 Ppx/GppA phosphatase family CVS42_13560 PF00571 CBS domain CVS42_13560 PF01769 Divalent cation transporter CVS42_13560 PF03448 MgtE intracellular N domain CVS42_13565 PF00669 Bacterial flagellin N-terminal helical region CVS42_13570 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_13575 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CVS42_13575 PF10135 CVS42_13575 CVS42_13580 PF02119 CVS42_13580 CVS42_13585 PF02107 CVS42_13585 CVS42_13590 PF00460 Flagella basal body rod protein CVS42_13590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_13595 PF00460 Flagella basal body rod protein CVS42_13595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_13600 PF00460 Flagella basal body rod protein CVS42_13600 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_13600 PF07559 Flagellar basal body protein FlaE CVS42_13605 PF03963 CVS42_13605 CVS42_13605 PF13860 FlgD Ig-like domain CVS42_13605 PF13861 FlgD Tudor-like domain CVS42_13610 PF00460 Flagella basal body rod protein CVS42_13610 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_13615 PF00460 Flagella basal body rod protein CVS42_13620 PF01739 CheR methyltransferase, SAM binding domain CVS42_13620 PF03705 CheR methyltransferase, all-alpha domain CVS42_13625 PF00072 Response regulator receiver domain CVS42_13625 PF01584 CheW-like domain CVS42_13630 PF13144 SAF-like CVS42_13635 PF04316 Anti-sigma-28 factor, FlgM CVS42_13640 PF05130 FlgN protein CVS42_13645 PF12850 Calcineurin-like phosphoesterase superfamily domain CVS42_13650 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_13655 PF00892 EamA-like transporter family CVS42_13660 PF00849 RNA pseudouridylate synthase CVS42_13660 PF01479 S4 domain CVS42_13665 PF11871 CVS42_13665 CVS42_13665 PF13487 HD domain CVS42_13675 PF00923 Transaldolase CVS42_13680 PF04055 Radical SAM superfamily CVS42_13680 PF13353 4Fe-4S single cluster domain CVS42_13685 PF01228 Glycine radical CVS42_13685 PF02901 Pyruvate formate lyase CVS42_13690 PF00455 CVS42_13690 CVS42_13690 PF08220 DeoR-like helix-turn-helix domain CVS42_13695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_13700 PF11042 CVS42_13700 CVS42_13710 PF06146 CVS42_13710 CVS42_13720 PF00313 'Cold-shock' DNA-binding domain CVS42_13725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS42_13725 PF00364 Biotin-requiring enzyme CVS42_13725 PF02817 e3 binding domain CVS42_13730 PF02779 Transketolase, pyrimidine binding domain CVS42_13730 PF02780 Transketolase, C-terminal domain CVS42_13735 PF00676 Dehydrogenase E1 component CVS42_13745 PF00501 AMP-binding enzyme CVS42_13745 PF00550 Phosphopantetheine attachment site CVS42_13745 PF00668 Condensation domain CVS42_13745 PF00975 Thioesterase domain CVS42_13745 PF13193 AMP-binding enzyme C-terminal domain CVS42_13750 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_13755 PF00550 Phosphopantetheine attachment site CVS42_13755 PF00857 Isochorismatase family CVS42_13760 PF00501 AMP-binding enzyme CVS42_13760 PF13193 AMP-binding enzyme C-terminal domain CVS42_13765 PF00425 chorismate binding enzyme CVS42_13770 PF00593 TonB dependent receptor CVS42_13770 PF07715 TonB-dependent Receptor Plug Domain CVS42_13775 PF00793 DAHP synthetase I family CVS42_13780 PF00356 Bacterial regulatory proteins, lacI family CVS42_13780 PF13377 Periplasmic binding protein-like domain CVS42_13785 PF01464 Transglycosylase SLT domain CVS42_13785 PF14718 Soluble lytic murein transglycosylase L domain CVS42_13790 PF00563 EAL domain CVS42_13790 PF00990 GGDEF domain CVS42_13790 PF13426 PAS domain CVS42_13795 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CVS42_13800 PF11993 CVS42_13800 CVS42_13815 PF04357 CVS42_13815 CVS42_13820 PF01103 Surface antigen CVS42_13820 PF07244 Surface antigen variable number repeat CVS42_13820 PF17243 CVS42_13820 CVS42_13830 PF00639 PPIC-type PPIASE domain CVS42_13835 PF10137 CVS42_13835 CVS42_13840 PF07386 CVS42_13840 CVS42_13845 PF02627 Carboxymuconolactone decarboxylase family CVS42_13850 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS42_13850 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_13850 PF09335 CVS42_13850 CVS42_13855 PF13416 Bacterial extracellular solute-binding protein CVS42_13865 PF00005 ABC transporter CVS42_13870 PF01066 CDP-alcohol phosphatidyltransferase CVS42_13875 PF13406 Transglycosylase SLT domain CVS42_13880 PF01047 MarR family CVS42_13885 PF00892 EamA-like transporter family CVS42_13890 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVS42_13890 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVS42_13890 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVS42_13890 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVS42_13895 PF03925 SeqA protein CVS42_13895 PF17206 CVS42_13895 CVS42_13900 PF12697 Alpha/beta hydrolase family CVS42_13905 PF10981 CVS42_13905 CVS42_13910 PF01402 Ribbon-helix-helix protein, copG family CVS42_13915 PF00258 Flavodoxin CVS42_13920 PF14539 Domain of unknown function (DUF4442) CVS42_13925 PF01475 Ferric uptake regulator family CVS42_13930 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS42_13930 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CVS42_13935 PF00728 Glycosyl hydrolase family 20, catalytic domain CVS42_13935 PF02838 Glycosyl hydrolase family 20, domain 2 CVS42_13935 PF03173 Putative carbohydrate binding domain CVS42_13935 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CVS42_13940 PF00367 phosphotransferase system, EIIB CVS42_13940 PF02378 Phosphotransferase system, EIIC CVS42_13945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CVS42_13950 PF01979 Amidohydrolase family CVS42_13955 PF00480 ROK family CVS42_13960 PF00884 Sulfatase CVS42_13960 PF08019 CVS42_13960 CVS42_13965 PF11871 CVS42_13965 CVS42_13965 PF13487 HD domain CVS42_13970 PF06580 CVS42_13970 CVS42_13970 PF07694 5TMR of 5TMR-LYT CVS42_13975 PF00072 Response regulator receiver domain CVS42_13975 PF04397 LytTr DNA-binding domain CVS42_13980 PF02554 CVS42_13980 CVS42_13980 PF13722 CVS42_13980 CVS42_13985 PF11742 CVS42_13985 CVS42_13990 PF13533 Biotin-lipoyl like CVS42_13995 PF00271 Helicase conserved C-terminal domain CVS42_13995 PF04851 Type III restriction enzyme, res subunit CVS42_14000 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CVS42_14005 PF00462 Glutaredoxin CVS42_14010 PF03372 Endonuclease/Exonuclease/phosphatase family CVS42_14020 PF03061 Thioesterase superfamily CVS42_14025 PF13460 NADH(P)-binding CVS42_14035 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CVS42_14035 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CVS42_14035 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_14035 PF10371 Domain of unknown function CVS42_14035 PF12838 4Fe-4S dicluster domain CVS42_14035 PF17147 CVS42_14035 CVS42_14040 PF00037 4Fe-4S binding domain CVS42_14040 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_14040 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CVS42_14045 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_14050 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_14050 PF00175 Oxidoreductase NAD-binding domain CVS42_14050 PF00970 Oxidoreductase FAD-binding domain CVS42_14050 PF03473 MOSC domain CVS42_14050 PF03476 MOSC N-terminal beta barrel domain CVS42_14055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_14060 PF01435 Peptidase family M48 CVS42_14065 PF13500 AAA domain CVS42_14070 PF08241 Methyltransferase domain CVS42_14075 PF00155 Aminotransferase class I and II CVS42_14080 PF04055 Radical SAM superfamily CVS42_14080 PF06968 Biotin and Thiamin Synthesis associated domain CVS42_14085 PF00202 Aminotransferase class-III CVS42_14090 PF00672 HAMP domain CVS42_14100 PF00152 tRNA synthetases class II (D, K and N) CVS42_14100 PF01336 OB-fold nucleic acid binding domain CVS42_14105 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_14110 PF03605 CVS42_14110 CVS42_14115 PF01902 ATP-binding region CVS42_14120 PF01546 Peptidase family M20/M25/M40 CVS42_14120 PF07687 Peptidase dimerisation domain CVS42_14125 PF03606 CVS42_14125 CVS42_14135 PF03960 ArsC family CVS42_14140 PF01546 Peptidase family M20/M25/M40 CVS42_14140 PF07687 Peptidase dimerisation domain CVS42_14145 PF02557 D-alanyl-D-alanine carboxypeptidase CVS42_14155 PF00999 Sodium/hydrogen exchanger family CVS42_14155 PF02080 TrkA-C domain CVS42_14155 PF03471 Transporter associated domain CVS42_14160 PF07555 beta-N-acetylglucosaminidase CVS42_14165 PF00999 Sodium/hydrogen exchanger family CVS42_14170 PF01810 CVS42_14170 CVS42_14175 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_14180 PF07509 CVS42_14180 CVS42_14185 PF09904 Winged helix-turn helix CVS42_14195 PF01156 Inosine-uridine preferring nucleoside hydrolase CVS42_14200 PF00849 RNA pseudouridylate synthase CVS42_14205 PF01048 Phosphorylase superfamily CVS42_14210 PF00465 Iron-containing alcohol dehydrogenase CVS42_14215 PF04355 SmpA / OmlA family CVS42_14220 PF13460 NADH(P)-binding CVS42_14225 PF00282 Pyridoxal-dependent decarboxylase conserved domain CVS42_14230 PF03099 Biotin/lipoate A/B protein ligase family CVS42_14230 PF10437 Bacterial lipoate protein ligase C-terminus CVS42_14235 PF00989 PAS fold CVS42_14235 PF00990 GGDEF domain CVS42_14235 PF01814 Hemerythrin HHE cation binding domain CVS42_14235 PF09084 NMT1/THI5 like CVS42_14240 PF02687 CVS42_14240 CVS42_14240 PF12704 MacB-like periplasmic core domain CVS42_14245 PF02687 CVS42_14245 CVS42_14245 PF12704 MacB-like periplasmic core domain CVS42_14250 PF00005 ABC transporter CVS42_14255 PF16576 CVS42_14255 CVS42_14260 PF00873 AcrB/AcrD/AcrF family CVS42_14265 PF16576 CVS42_14265 CVS42_14275 PF04143 CVS42_14275 CVS42_14280 PF01022 Bacterial regulatory protein, arsR family CVS42_14285 PF11127 Protein of unknown function (DUF2892) CVS42_14290 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_14300 PF02308 CVS42_14300 CVS42_14305 PF00356 Bacterial regulatory proteins, lacI family CVS42_14305 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS42_14310 PF00251 Glycosyl hydrolases family 32 N-terminal domain CVS42_14310 PF08244 Glycosyl hydrolases family 32 C terminal CVS42_14315 PF00367 phosphotransferase system, EIIB CVS42_14315 PF02378 Phosphotransferase system, EIIC CVS42_14320 PF00294 pfkB family carbohydrate kinase CVS42_14325 PF02264 LamB porin CVS42_14325 PF11471 CVS42_14325 CVS42_14330 PF00226 DnaJ domain CVS42_14330 PF00684 DnaJ central domain CVS42_14330 PF01556 DnaJ C terminal domain CVS42_14335 PF00012 Hsp70 protein CVS42_14340 PF01025 GrpE CVS42_14345 PF01513 ATP-NAD kinase CVS42_14350 PF02463 RecF/RecN/SMC N terminal domain CVS42_14355 PF01368 DHH family CVS42_14355 PF02833 DHHA2 domain CVS42_14360 PF16576 CVS42_14360 CVS42_14365 PF00005 ABC transporter CVS42_14365 PF02687 CVS42_14365 CVS42_14365 PF12704 MacB-like periplasmic core domain CVS42_14370 PF02321 Outer membrane efflux protein CVS42_14375 PF00816 H-NS histone family CVS42_14380 PF04932 CVS42_14380 CVS42_14380 PF11846 CVS42_14380 CVS42_14380 PF15864 CVS42_14380 CVS42_14385 PF02397 CVS42_14385 CVS42_14390 PF00534 Glycosyl transferases group 1 CVS42_14390 PF13477 Glycosyl transferase 4-like CVS42_14395 PF00534 Glycosyl transferases group 1 CVS42_14395 PF13439 Glycosyltransferase Family 4 CVS42_14400 PF00535 Glycosyl transferase family 2 CVS42_14410 PF02719 Polysaccharide biosynthesis protein CVS42_14410 PF13727 CoA-binding domain CVS42_14415 PF00953 Glycosyl transferase family 4 CVS42_14420 PF01370 NAD dependent epimerase/dehydratase family CVS42_14430 PF01583 Adenylylsulphate kinase CVS42_14435 PF02080 TrkA-C domain CVS42_14435 PF03600 Citrate transporter CVS42_14440 PF00009 Elongation factor Tu GTP binding domain CVS42_14445 PF01507 Phosphoadenosine phosphosulfate reductase family CVS42_14450 PF02350 UDP-N-acetylglucosamine 2-epimerase CVS42_14455 PF00535 Glycosyl transferase family 2 CVS42_14455 PF13692 Glycosyl transferases group 1 CVS42_14470 PF00685 Sulfotransferase domain CVS42_14475 PF00005 ABC transporter CVS42_14475 PF14524 Wzt C-terminal domain CVS42_14485 PF00263 CVS42_14485 CVS42_14485 PF03958 Bacterial type II/III secretion system short domain CVS42_14510 PF07963 Prokaryotic N-terminal methylation motif CVS42_14515 PF07963 Prokaryotic N-terminal methylation motif CVS42_14520 PF07963 Prokaryotic N-terminal methylation motif CVS42_14525 PF07963 Prokaryotic N-terminal methylation motif CVS42_14525 PF08334 Type II secretion system (T2SS), protein G CVS42_14530 PF00482 Type II secretion system (T2SS), protein F CVS42_14535 PF00437 Type II/IV secretion system protein CVS42_14535 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS42_14540 PF01061 CVS42_14540 CVS42_14545 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CVS42_14550 PF00483 Nucleotidyl transferase CVS42_14555 PF04321 RmlD substrate binding domain CVS42_14560 PF16363 CVS42_14560 CVS42_14570 PF00873 AcrB/AcrD/AcrF family CVS42_14575 PF00529 HlyD family secretion protein CVS42_14575 PF13533 Biotin-lipoyl like CVS42_14580 PF00440 Bacterial regulatory proteins, tetR family CVS42_14580 PF08361 MAATS-type transcriptional repressor, C-terminal region CVS42_14590 PF00375 Sodium:dicarboxylate symporter family CVS42_14595 PF02001 CVS42_14595 CVS42_14600 PF02579 Dinitrogenase iron-molybdenum cofactor CVS42_14610 PF01966 HD domain CVS42_14615 PF00919 Uncharacterized protein family UPF0004 CVS42_14615 PF04055 Radical SAM superfamily CVS42_14620 PF07081 Protein of unknown function (DUF1349) CVS42_14630 PF01797 Transposase IS200 like CVS42_14640 PF14491 CVS42_14640 CVS42_14645 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_14645 PF14821 Threonine synthase N terminus CVS42_14650 PF00288 GHMP kinases N terminal domain CVS42_14650 PF08544 GHMP kinases C terminal CVS42_14655 PF00696 Amino acid kinase family CVS42_14655 PF00742 Homoserine dehydrogenase CVS42_14655 PF01842 ACT domain CVS42_14655 PF03447 Homoserine dehydrogenase, NAD binding domain CVS42_14655 PF13840 ACT domain CVS42_14660 PF00588 SpoU rRNA Methylase family CVS42_14665 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) CVS42_14670 PF13622 Thioesterase-like superfamily CVS42_14675 PF00849 RNA pseudouridylate synthase CVS42_14675 PF01479 S4 domain CVS42_14680 PF04079 Putative transcriptional regulators (Ypuh-like) CVS42_14685 PF02616 ScpA/B protein CVS42_14690 PF01300 Telomere recombination CVS42_14695 PF02811 PHP domain CVS42_14700 PF00425 chorismate binding enzyme CVS42_14700 PF04715 Anthranilate synthase component I, N terminal region CVS42_14705 PF00117 Glutamine amidotransferase class-I CVS42_14710 PF00591 Glycosyl transferase family, a/b domain CVS42_14710 PF02885 Glycosyl transferase family, helical bundle domain CVS42_14715 PF00218 Indole-3-glycerol phosphate synthase CVS42_14715 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CVS42_14720 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_14725 PF00290 Tryptophan synthase alpha chain CVS42_14740 PF04307 CVS42_14740 CVS42_14745 PF07685 CobB/CobQ-like glutamine amidotransferase domain CVS42_14745 PF09825 CVS42_14745 CVS42_14760 PF01773 Na+ dependent nucleoside transporter N-terminus CVS42_14760 PF07662 Na+ dependent nucleoside transporter C-terminus CVS42_14760 PF07670 Nucleoside recognition CVS42_14765 PF03960 ArsC family CVS42_14770 PF01758 Sodium Bile acid symporter family CVS42_14775 PF02374 Anion-transporting ATPase CVS42_14780 PF06953 Arsenical resistance operon trans-acting repressor ArsD CVS42_14785 PF12840 Helix-turn-helix domain CVS42_14790 PF03724 META domain CVS42_14800 PF03737 Demethylmenaquinone methyltransferase CVS42_14805 PF11697 CVS42_14805 CVS42_14810 PF00072 Response regulator receiver domain CVS42_14810 PF00486 Transcriptional regulatory protein, C terminal CVS42_14825 PF00005 ABC transporter CVS42_14825 PF00664 ABC transporter transmembrane region CVS42_14830 PF00005 ABC transporter CVS42_14835 PF16358 CVS42_14835 CVS42_14840 PF04343 CVS42_14840 CVS42_14845 PF01370 NAD dependent epimerase/dehydratase family CVS42_14850 PF01980 Uncharacterised protein family UPF0066 CVS42_14855 PF01292 Prokaryotic cytochrome b561 CVS42_14860 PF04519 CVS42_14860 CVS42_14865 PF00072 Response regulator receiver domain CVS42_14865 PF00486 Transcriptional regulatory protein, C terminal CVS42_14870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_14875 PF03350 CVS42_14875 CVS42_14880 PF13673 Acetyltransferase (GNAT) domain CVS42_14885 PF11730 CVS42_14885 CVS42_14890 PF01266 FAD dependent oxidoreductase CVS42_14895 PF07883 Cupin domain CVS42_14895 PF13560 Helix-turn-helix domain CVS42_14900 PF00171 Aldehyde dehydrogenase family CVS42_14905 PF00202 Aminotransferase class-III CVS42_14910 PF13520 Amino acid permease CVS42_14920 PF13520 Amino acid permease CVS42_14925 PF02690 CVS42_14925 CVS42_14930 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_14930 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS42_14935 PF01019 Gamma-glutamyltranspeptidase CVS42_14940 PF04381 Putative exonuclease, RdgC CVS42_14945 PF13508 Acetyltransferase (GNAT) domain CVS42_14950 PF00149 Calcineurin-like phosphoesterase CVS42_14950 PF12320 Type 5 capsule protein repressor C-terminal domain CVS42_14955 PF13476 AAA domain CVS42_14955 PF13558 Putative exonuclease SbcCD, C subunit CVS42_14960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CVS42_14970 PF00224 Pyruvate kinase, barrel domain CVS42_14970 PF02887 Pyruvate kinase, alpha/beta domain CVS42_14975 PF00924 Mechanosensitive ion channel CVS42_14975 PF12794 CVS42_14975 CVS42_14975 PF12795 CVS42_14975 CVS42_14985 PF01431 Peptidase family M13 CVS42_14985 PF05649 Peptidase family M13 CVS42_14990 PF00990 GGDEF domain CVS42_14995 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CVS42_15000 PF00391 PEP-utilising enzyme, mobile domain CVS42_15000 PF02896 PEP-utilising enzyme, TIM barrel domain CVS42_15000 PF05524 PEP-utilising enzyme, N-terminal CVS42_15005 PF00381 PTS HPr component phosphorylation site CVS42_15010 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_15015 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_15020 PF05762 VWA domain containing CoxE-like protein CVS42_15025 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVS42_15025 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVS42_15030 PF13487 HD domain CVS42_15035 PF01471 Putative peptidoglycan binding domain CVS42_15035 PF13401 AAA domain CVS42_15040 PF16537 CVS42_15040 CVS42_15045 PF11356 Type IV pilus biogenesis CVS42_15050 PF00263 CVS42_15050 CVS42_15050 PF03958 Bacterial type II/III secretion system short domain CVS42_15055 PF00437 Type II/IV secretion system protein CVS42_15060 PF00482 Type II secretion system (T2SS), protein F CVS42_15065 PF07963 Prokaryotic N-terminal methylation motif CVS42_15065 PF08334 Type II secretion system (T2SS), protein G CVS42_15070 PF07963 Prokaryotic N-terminal methylation motif CVS42_15070 PF12019 Type II transport protein GspH CVS42_15075 PF02501 Type II secretion system (T2SS), protein I CVS42_15075 PF07963 Prokaryotic N-terminal methylation motif CVS42_15080 PF07963 Prokaryotic N-terminal methylation motif CVS42_15080 PF11612 Type II secretion system (T2SS), protein J CVS42_15085 PF03934 Type II secretion system (T2SS), protein K CVS42_15090 PF05134 Type II secretion system (T2SS), protein L CVS42_15090 PF12693 GspL periplasmic domain CVS42_15095 PF04612 Type II secretion system (T2SS), protein M CVS42_15100 PF01203 CVS42_15100 CVS42_15105 PF00589 Phage integrase family CVS42_15105 PF13356 Domain of unknown function (DUF4102) CVS42_15110 PF08238 Sel1 repeat CVS42_15120 PF05488 PAAR motif CVS42_15130 PF09346 SMI1 / KNR4 family (SUKH-1) CVS42_15135 PF09346 SMI1 / KNR4 family (SUKH-1) CVS42_15140 PF09346 SMI1 / KNR4 family (SUKH-1) CVS42_15155 PF08238 Sel1 repeat CVS42_15170 PF08786 Domain of unknown function (DUF1795) CVS42_15175 PF05954 Phage late control gene D protein (GPD) CVS42_15180 PF05638 Protein of unknown function (DUF796) CVS42_15190 PF00816 H-NS histone family CVS42_15195 PF11726 CVS42_15195 CVS42_15200 PF13148 CVS42_15200 CVS42_15205 PF05930 Prophage CP4-57 regulatory protein (AlpA) CVS42_15215 PF04970 Lecithin retinol acyltransferase CVS42_15220 PF01381 Helix-turn-helix CVS42_15235 PF10980 Protein of unknown function (DUF2787) CVS42_15250 PF04002 RadC-like JAB domain CVS42_15280 PF06154 YagB/YeeU/YfjZ family CVS42_15295 PF06154 YagB/YeeU/YfjZ family CVS42_15300 PF04002 RadC-like JAB domain CVS42_15305 PF02384 N-6 DNA Methylase CVS42_15305 PF12161 HsdM N-terminal domain CVS42_15310 PF01420 Type I restriction modification DNA specificity domain CVS42_15315 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CVS42_15315 PF04851 Type III restriction enzyme, res subunit CVS42_15315 PF12008 Type I restriction and modification enzyme - subunit R C terminal CVS42_15325 PF01027 Inhibitor of apoptosis-promoting Bax1 CVS42_15330 PF12805 CVS42_15330 CVS42_15330 PF13515 CVS42_15330 CVS42_15335 PF04358 DsrC like protein CVS42_15340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CVS42_15345 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15345 PF03466 LysR substrate binding domain CVS42_15350 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_15355 PF05163 DinB family CVS42_15365 PF00691 OmpA family CVS42_15380 PF00328 Histidine phosphatase superfamily (branch 2) CVS42_15385 PF14130 CVS42_15385 CVS42_15395 PF04055 Radical SAM superfamily CVS42_15395 PF08497 CVS42_15395 CVS42_15395 PF11842 CVS42_15395 CVS42_15400 PF00873 AcrB/AcrD/AcrF family CVS42_15405 PF16576 CVS42_15405 CVS42_15410 PF00990 GGDEF domain CVS42_15415 PF01734 Patatin-like phospholipase CVS42_15420 PF13520 Amino acid permease CVS42_15425 PF01381 Helix-turn-helix CVS42_15435 PF00691 OmpA family CVS42_15435 PF01389 OmpA-like transmembrane domain CVS42_15440 PF00691 OmpA family CVS42_15440 PF01389 OmpA-like transmembrane domain CVS42_15445 PF00390 Malic enzyme, N-terminal domain CVS42_15445 PF03949 Malic enzyme, NAD binding domain CVS42_15450 PF12833 Helix-turn-helix domain CVS42_15455 PF01554 MatE CVS42_15460 PF10692 Protein of unknown function (DUF2498) CVS42_15465 PF00990 GGDEF domain CVS42_15470 PF00860 Permease family CVS42_15475 PF03099 Biotin/lipoate A/B protein ligase family CVS42_15480 PF01235 CVS42_15480 CVS42_15485 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CVS42_15485 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS42_15490 PF01699 Sodium/calcium exchanger protein CVS42_15495 PF08534 Redoxin CVS42_15505 PF00293 NUDIX domain CVS42_15510 PF06526 Protein of unknown function (DUF1107) CVS42_15515 PF11006 CVS42_15515 CVS42_15520 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_15520 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CVS42_15525 PF03932 CutC family CVS42_15530 PF00480 ROK family CVS42_15535 PF00583 Acetyltransferase (GNAT) family CVS42_15540 PF01435 Peptidase family M48 CVS42_15545 PF12849 PBP superfamily domain CVS42_15550 PF00512 His Kinase A (phospho-acceptor) domain CVS42_15550 PF00989 PAS fold CVS42_15550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_15550 PF11808 CVS42_15550 CVS42_15555 PF00072 Response regulator receiver domain CVS42_15555 PF00486 Transcriptional regulatory protein, C terminal CVS42_15560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_15565 PF00158 Sigma-54 interaction domain CVS42_15565 PF01590 GAF domain CVS42_15565 PF02954 Bacterial regulatory protein, Fis family CVS42_15570 PF00171 Aldehyde dehydrogenase family CVS42_15575 PF12833 Helix-turn-helix domain CVS42_15580 PF00892 EamA-like transporter family CVS42_15585 PF00072 Response regulator receiver domain CVS42_15590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_15590 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CVS42_15590 PF17203 CVS42_15590 CVS42_15595 PF00390 Malic enzyme, N-terminal domain CVS42_15595 PF03949 Malic enzyme, NAD binding domain CVS42_15600 PF03390 CVS42_15600 CVS42_15615 PF01047 MarR family CVS42_15620 PF13533 Biotin-lipoyl like CVS42_15625 PF11168 CVS42_15625 CVS42_15625 PF13515 CVS42_15625 CVS42_15630 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_15635 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme CVS42_15640 PF03544 Gram-negative bacterial TonB protein C-terminal CVS42_15645 PF01679 CVS42_15645 CVS42_15650 PF13353 4Fe-4S single cluster domain CVS42_15655 PF03477 ATP cone domain CVS42_15655 PF13597 Anaerobic ribonucleoside-triphosphate reductase CVS42_15660 PF04392 ABC transporter substrate binding protein CVS42_15665 PF00533 BRCA1 C Terminus (BRCT) domain CVS42_15665 PF01653 NAD-dependent DNA ligase adenylation domain CVS42_15665 PF03120 NAD-dependent DNA ligase OB-fold domain CVS42_15665 PF12826 Helix-hairpin-helix motif CVS42_15665 PF14520 Helix-hairpin-helix domain CVS42_15670 PF04354 ZipA, C-terminal FtsZ-binding domain CVS42_15675 PF02463 RecF/RecN/SMC N terminal domain CVS42_15680 PF07264 Etoposide-induced protein 2 CVS42_15685 PF03458 CVS42_15685 CVS42_15695 PF05951 CVS42_15695 CVS42_15700 PF01471 Putative peptidoglycan binding domain CVS42_15700 PF03734 L,D-transpeptidase catalytic domain CVS42_15705 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_15715 PF00535 Glycosyl transferase family 2 CVS42_15720 PF04138 CVS42_15720 CVS42_15730 PF00128 Alpha amylase, catalytic domain CVS42_15735 PF13417 Glutathione S-transferase, N-terminal domain CVS42_15740 PF00072 Response regulator receiver domain CVS42_15740 PF00196 Bacterial regulatory proteins, luxR family CVS42_15745 PF00440 Bacterial regulatory proteins, tetR family CVS42_15750 PF12146 Putative lysophospholipase CVS42_15755 PF01734 Patatin-like phospholipase CVS42_15760 PF00999 Sodium/hydrogen exchanger family CVS42_15760 PF02080 TrkA-C domain CVS42_15760 PF02254 TrkA-N domain CVS42_15765 PF00990 GGDEF domain CVS42_15770 PF01171 PP-loop family CVS42_15770 PF09179 TilS substrate binding domain CVS42_15770 PF11734 TilS substrate C-terminal domain CVS42_15775 PF01431 Peptidase family M13 CVS42_15775 PF05649 Peptidase family M13 CVS42_15780 PF16743 CVS42_15780 CVS42_15785 PF08543 Phosphomethylpyrimidine kinase CVS42_15790 PF01276 Orn/Lys/Arg decarboxylase, major domain CVS42_15790 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain CVS42_15790 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CVS42_15795 PF13520 Amino acid permease CVS42_15800 PF00486 Transcriptional regulatory protein, C terminal CVS42_15810 PF13520 Amino acid permease CVS42_15815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15815 PF03466 LysR substrate binding domain CVS42_15820 PF12706 Beta-lactamase superfamily domain CVS42_15825 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_15830 PF03222 Tryptophan/tyrosine permease family CVS42_15835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15835 PF03466 LysR substrate binding domain CVS42_15840 PF01554 MatE CVS42_15845 PF00205 Thiamine pyrophosphate enzyme, central domain CVS42_15845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_15845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS42_15850 PF03306 Alpha-acetolactate decarboxylase CVS42_15855 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15855 PF03466 LysR substrate binding domain CVS42_15860 PF00579 tRNA synthetases class I (W and Y) CVS42_15860 PF01479 S4 domain CVS42_15865 PF01551 Peptidase family M23 CVS42_15865 PF04225 Opacity-associated protein A LysM-like domain CVS42_15865 PF08525 CVS42_15865 CVS42_15870 PF03702 Uncharacterised protein family (UPF0075) CVS42_15880 PF01042 Endoribonuclease L-PSP CVS42_15885 PF00196 Bacterial regulatory proteins, luxR family CVS42_15885 PF03472 Autoinducer binding domain CVS42_15890 PF01965 DJ-1/PfpI family CVS42_15895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15895 PF03466 LysR substrate binding domain CVS42_15900 PF00107 Zinc-binding dehydrogenase CVS42_15900 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_15905 PF11185 CVS42_15905 CVS42_15910 PF00456 Transketolase, thiamine diphosphate binding domain CVS42_15910 PF02779 Transketolase, pyrimidine binding domain CVS42_15910 PF02780 Transketolase, C-terminal domain CVS42_15915 PF00438 S-adenosylmethionine synthetase, N-terminal domain CVS42_15915 PF02772 S-adenosylmethionine synthetase, central domain CVS42_15915 PF02773 S-adenosylmethionine synthetase, C-terminal domain CVS42_15920 PF10263 CVS42_15920 CVS42_15920 PF17283 CVS42_15920 CVS42_15925 PF04231 Endonuclease I CVS42_15930 PF04452 RNA methyltransferase CVS42_15935 PF02951 Prokaryotic glutathione synthetase, N-terminal domain CVS42_15935 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain CVS42_15940 PF02622 Uncharacterized ACR, COG1678 CVS42_15945 PF03652 Uncharacterised protein family (UPF0081) CVS42_15950 PF00854 POT family CVS42_15955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_15955 PF03466 LysR substrate binding domain CVS42_15960 PF07690 Major Facilitator Superfamily CVS42_15965 PF07726 ATPase family associated with various cellular activities (AAA) CVS42_15970 PF01882 CVS42_15970 CVS42_15975 PF01841 Transglutaminase-like superfamily CVS42_15975 PF11992 CVS42_15975 CVS42_15975 PF13559 CVS42_15975 CVS42_15980 PF01235 CVS42_15980 CVS42_15985 PF00923 Transaldolase CVS42_15990 PF12065 CVS42_15990 CVS42_15995 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CVS42_16000 PF01336 OB-fold nucleic acid binding domain CVS42_16000 PF02811 PHP domain CVS42_16000 PF07733 Bacterial DNA polymerase III alpha subunit CVS42_16000 PF14579 Helix-hairpin-helix motif CVS42_16005 PF01351 Ribonuclease HII CVS42_16010 PF02684 CVS42_16010 CVS42_16015 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_16015 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CVS42_16020 PF07977 FabA-like domain CVS42_16025 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_16025 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CVS42_16030 PF03938 Outer membrane protein (OmpH-like) CVS42_16035 PF01103 Surface antigen CVS42_16035 PF07244 Surface antigen variable number repeat CVS42_16040 PF02163 Peptidase family M50 CVS42_16040 PF13180 PDZ domain CVS42_16045 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CVS42_16045 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal CVS42_16045 PF13288 DXP reductoisomerase C-terminal domain CVS42_16050 PF01148 Cytidylyltransferase family CVS42_16055 PF01255 Putative undecaprenyl diphosphate synthase CVS42_16060 PF01765 Ribosome recycling factor CVS42_16065 PF00696 Amino acid kinase family CVS42_16070 PF00889 Elongation factor TS CVS42_16075 PF00318 Ribosomal protein S2 CVS42_16080 PF00557 Metallopeptidase family M24 CVS42_16085 PF01909 Nucleotidyltransferase domain CVS42_16085 PF01966 HD domain CVS42_16085 PF08335 GlnD PII-uridylyltransferase CVS42_16090 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_16090 PF14602 Hexapeptide repeat of succinyl-transferase CVS42_16090 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CVS42_16095 PF11944 CVS42_16095 CVS42_16100 PF00367 phosphotransferase system, EIIB CVS42_16100 PF02378 Phosphotransferase system, EIIC CVS42_16105 PF07148 CVS42_16105 CVS42_16110 PF02264 LamB porin CVS42_16115 PF00258 Flavodoxin CVS42_16120 PF00849 RNA pseudouridylate synthase CVS42_16125 PF04287 tRNA pseudouridine synthase C CVS42_16130 PF12069 CVS42_16130 CVS42_16135 PF11743 CVS42_16135 CVS42_16140 PF10982 Protein of unknown function (DUF2789) CVS42_16150 PF10071 CVS42_16150 CVS42_16155 PF07348 Syd protein (SUKH-2) CVS42_16160 PF14489 QueF-like protein CVS42_16160 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CVS42_16170 PF00990 GGDEF domain CVS42_16175 PF03641 Possible lysine decarboxylase CVS42_16175 PF11892 Domain of unknown function (DUF3412) CVS42_16175 PF14793 Domain of unknown function (DUF4478) CVS42_16180 PF01367 5'-3' exonuclease, C-terminal SAM fold CVS42_16180 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CVS42_16185 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS42_16195 PF01728 FtsJ-like methyltransferase CVS42_16200 PF04241 CVS42_16200 CVS42_16205 PF12697 Alpha/beta hydrolase family CVS42_16210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_16210 PF03466 LysR substrate binding domain CVS42_16215 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_16215 PF00672 HAMP domain CVS42_16215 PF02743 Cache domain CVS42_16220 PF00817 impB/mucB/samB family CVS42_16220 PF11798 IMS family HHH motif CVS42_16230 PF01965 DJ-1/PfpI family CVS42_16235 PF02558 Ketopantoate reductase PanE/ApbA CVS42_16235 PF08546 Ketopantoate reductase PanE/ApbA C terminal CVS42_16240 PF04461 Protein of unknown function (DUF520) CVS42_16245 PF03502 Nucleoside-specific channel-forming protein, Tsx CVS42_16250 PF07690 Major Facilitator Superfamily CVS42_16255 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CVS42_16260 PF03923 CVS42_16260 CVS42_16265 PF05175 Methyltransferase small domain CVS42_16270 PF01722 BolA-like protein CVS42_16275 PF05896 CVS42_16275 CVS42_16275 PF11973 CVS42_16275 CVS42_16280 PF03116 CVS42_16280 CVS42_16285 PF04205 FMN-binding domain CVS42_16290 PF02508 CVS42_16290 CVS42_16295 PF02508 CVS42_16295 CVS42_16300 PF00111 2Fe-2S iron-sulfur cluster binding domain CVS42_16300 PF00175 Oxidoreductase NAD-binding domain CVS42_16300 PF00970 Oxidoreductase FAD-binding domain CVS42_16305 PF02424 ApbE family CVS42_16310 PF04400 CVS42_16310 CVS42_16315 PF12915 CVS42_16315 CVS42_16320 PF16036 CVS42_16320 CVS42_16325 PF09493 CVS42_16325 CVS42_16330 PF11086 CVS42_16330 CVS42_16335 PF02353 Mycolic acid cyclopropane synthetase CVS42_16340 PF07103 CVS42_16340 CVS42_16345 PF01593 Flavin containing amine oxidoreductase CVS42_16350 PF00106 short chain dehydrogenase CVS42_16355 PF12680 SnoaL-like domain CVS42_16360 PF00875 DNA photolyase CVS42_16360 PF03441 FAD binding domain of DNA photolyase CVS42_16365 PF13411 MerR HTH family regulatory protein CVS42_16370 PF04463 CVS42_16370 CVS42_16370 PF08349 CVS42_16370 CVS42_16380 PF11355 CVS42_16380 CVS42_16395 PF13419 Haloacid dehalogenase-like hydrolase CVS42_16400 PF00800 Prephenate dehydratase CVS42_16400 PF01817 Chorismate mutase type II CVS42_16405 PF02169 LPP20 lipoprotein CVS42_16415 PF16538 CVS42_16415 CVS42_16415 PF16539 CVS42_16415 CVS42_16415 PF16548 CVS42_16415 CVS42_16425 PF08238 Sel1 repeat CVS42_16435 PF05488 PAAR motif CVS42_16440 PF05638 Protein of unknown function (DUF796) CVS42_16450 PF00892 EamA-like transporter family CVS42_16455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_16460 PF03573 outer membrane porin, OprD family CVS42_16465 PF00106 short chain dehydrogenase CVS42_16470 PF08921 Domain of unknown function (DUF1904) CVS42_16475 PF01963 CVS42_16475 CVS42_16480 PF11346 CVS42_16480 CVS42_16485 PF01713 Smr domain CVS42_16490 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CVS42_16505 PF07963 Prokaryotic N-terminal methylation motif CVS42_16515 PF07963 Prokaryotic N-terminal methylation motif CVS42_16515 PF12019 Type II transport protein GspH CVS42_16520 PF07963 Prokaryotic N-terminal methylation motif CVS42_16520 PF16732 CVS42_16520 CVS42_16525 PF00730 HhH-GPD superfamily base excision DNA repair protein CVS42_16525 PF02805 Metal binding domain of Ada CVS42_16525 PF06029 AlkA N-terminal domain CVS42_16525 PF12833 Helix-turn-helix domain CVS42_16530 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS42_16530 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CVS42_16535 PF01136 CVS42_16535 CVS42_16535 PF12392 CVS42_16535 CVS42_16540 PF01810 CVS42_16540 CVS42_16545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_16545 PF03466 LysR substrate binding domain CVS42_16550 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CVS42_16550 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CVS42_16555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_16560 PF00072 Response regulator receiver domain CVS42_16565 PF13466 STAS domain CVS42_16570 PF01584 CheW-like domain CVS42_16570 PF01627 Hpt domain CVS42_16570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_16570 PF02895 Signal transducing histidine kinase, homodimeric domain CVS42_16575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_16575 PF00672 HAMP domain CVS42_16575 PF12729 CVS42_16575 CVS42_16580 PF01584 CheW-like domain CVS42_16585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_16590 PF01739 CheR methyltransferase, SAM binding domain CVS42_16590 PF03705 CheR methyltransferase, all-alpha domain CVS42_16595 PF03975 CheD chemotactic sensory transduction CVS42_16600 PF00072 Response regulator receiver domain CVS42_16600 PF01339 CheB methylesterase CVS42_16605 PF00013 KH domain CVS42_16605 PF00575 S1 RNA binding domain CVS42_16605 PF01138 3' exoribonuclease family, domain 1 CVS42_16605 PF03725 3' exoribonuclease family, domain 2 CVS42_16605 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CVS42_16610 PF00312 Ribosomal protein S15 CVS42_16615 PF01509 TruB family pseudouridylate synthase (N terminal domain) CVS42_16615 PF09157 Pseudouridine synthase II TruB, C-terminal CVS42_16615 PF16198 CVS42_16615 CVS42_16620 PF02033 Ribosome-binding factor A CVS42_16625 PF00009 Elongation factor Tu GTP binding domain CVS42_16625 PF04760 Translation initiation factor IF-2, N-terminal region CVS42_16625 PF08364 CVS42_16625 CVS42_16625 PF11987 Translation-initiation factor 2 CVS42_16630 PF08529 NusA N-terminal domain CVS42_16630 PF13184 NusA-like KH domain CVS42_16630 PF14520 Helix-hairpin-helix domain CVS42_16635 PF02576 Uncharacterised BCR, YhbC family COG0779 CVS42_16635 PF17384 CVS42_16635 CVS42_16650 PF03840 Preprotein translocase SecG subunit CVS42_16655 PF00121 Triosephosphate isomerase CVS42_16660 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CVS42_16660 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CVS42_16660 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CVS42_16660 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CVS42_16665 PF00809 Pterin binding enzyme CVS42_16670 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_16670 PF01434 Peptidase family M41 CVS42_16670 PF06480 FtsH Extracellular CVS42_16675 PF01728 FtsJ-like methyltransferase CVS42_16680 PF01985 CRS1 / YhbY (CRM) domain CVS42_16690 PF01272 Transcription elongation factor, GreA/GreB, C-term CVS42_16690 PF03449 Transcription elongation factor, N-terminal CVS42_16695 PF00691 OmpA family CVS42_16695 PF13677 CVS42_16695 CVS42_16700 PF01618 CVS42_16700 CVS42_16705 PF02609 Exonuclease VII small subunit CVS42_16710 PF00348 Polyprenyl synthetase CVS42_16715 PF02779 Transketolase, pyrimidine binding domain CVS42_16715 PF02780 Transketolase, C-terminal domain CVS42_16715 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CVS42_16720 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_16720 PF12911 CVS42_16720 CVS42_16725 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_16730 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_16735 PF00005 ABC transporter CVS42_16735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_16740 PF04608 Phosphatidylglycerophosphatase A CVS42_16745 PF00586 AIR synthase related protein, N-terminal domain CVS42_16745 PF02769 AIR synthase related protein, C-terminal domain CVS42_16750 PF01029 NusB family CVS42_16755 PF00885 6,7-dimethyl-8-ribityllumazine synthase CVS42_16760 PF00089 Trypsin CVS42_16765 PF00925 GTP cyclohydrolase II CVS42_16765 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CVS42_16770 PF00677 Lumazine binding domain CVS42_16775 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CVS42_16775 PF01872 RibD C-terminal domain CVS42_16780 PF03477 ATP cone domain CVS42_16790 PF00464 Serine hydroxymethyltransferase CVS42_16800 PF00072 Response regulator receiver domain CVS42_16800 PF00512 His Kinase A (phospho-acceptor) domain CVS42_16800 PF00672 HAMP domain CVS42_16800 PF01627 Hpt domain CVS42_16800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_16805 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CVS42_16810 PF04828 Glutathione-dependent formaldehyde-activating enzyme CVS42_16815 PF00072 Response regulator receiver domain CVS42_16815 PF00486 Transcriptional regulatory protein, C terminal CVS42_16820 PF03264 NapC/NirT cytochrome c family, N-terminal region CVS42_16825 PF00384 Molybdopterin oxidoreductase CVS42_16825 PF01568 Molydopterin dinucleotide binding domain CVS42_16830 PF02613 Nitrate reductase delta subunit CVS42_16840 PF00563 EAL domain CVS42_16840 PF00990 GGDEF domain CVS42_16840 PF08448 PAS fold CVS42_16840 PF13426 PAS domain CVS42_16850 PF00501 AMP-binding enzyme CVS42_16850 PF13193 AMP-binding enzyme C-terminal domain CVS42_16850 PF16177 CVS42_16850 CVS42_16855 PF01220 Dehydroquinase class II CVS42_16860 PF00364 Biotin-requiring enzyme CVS42_16865 PF00289 Carbamoyl-phosphate synthase L chain, N-terminal domain CVS42_16865 PF02785 Biotin carboxylase C-terminal domain CVS42_16865 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CVS42_16870 PF06196 CVS42_16870 CVS42_16875 PF00474 Sodium:solute symporter family CVS42_16880 PF00367 phosphotransferase system, EIIB CVS42_16880 PF02378 Phosphotransferase system, EIIC CVS42_16885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_16885 PF03466 LysR substrate binding domain CVS42_16890 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_16890 PF13602 Zinc-binding dehydrogenase CVS42_16895 PF06325 Ribosomal protein L11 methyltransferase (PrmA) CVS42_16900 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_16900 PF12464 Maltose acetyltransferase CVS42_16900 PF14602 Hexapeptide repeat of succinyl-transferase CVS42_16905 PF00881 Nitroreductase family CVS42_16910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CVS42_16910 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_16915 PF01343 Peptidase family S49 CVS42_16920 PF01476 LysM domain CVS42_16920 PF03734 L,D-transpeptidase catalytic domain CVS42_16925 PF13432 Tetratricopeptide repeat CVS42_16930 PF03544 Gram-negative bacterial TonB protein C-terminal CVS42_16935 PF02472 Biopolymer transport protein ExbD/TolR CVS42_16940 PF01618 CVS42_16940 CVS42_16945 PF01618 CVS42_16945 CVS42_16950 PF11932 CVS42_16950 CVS42_16955 PF00593 TonB dependent receptor CVS42_16955 PF07715 TonB-dependent Receptor Plug Domain CVS42_16960 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_16965 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_16970 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CVS42_16975 PF00005 ABC transporter CVS42_16975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_16980 PF00005 ABC transporter CVS42_16980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CVS42_16985 PF02588 CVS42_16985 CVS42_16990 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CVS42_16990 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CVS42_16990 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CVS42_16995 PF01370 NAD dependent epimerase/dehydratase family CVS42_17000 PF09849 CVS42_17000 CVS42_17010 PF01464 Transglycosylase SLT domain CVS42_17015 PF10688 CVS42_17015 CVS42_17020 PF00027 Cyclic nucleotide-binding domain CVS42_17025 PF00005 ABC transporter CVS42_17025 PF12848 ABC transporter CVS42_17035 PF00860 Permease family CVS42_17045 PF00749 tRNA synthetases class I (E and Q), catalytic domain CVS42_17050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_17050 PF00672 HAMP domain CVS42_17055 PF04225 Opacity-associated protein A LysM-like domain CVS42_17060 PF00313 'Cold-shock' DNA-binding domain CVS42_17100 PF00929 Exonuclease CVS42_17105 PF03193 Protein of unknown function, DUF258 CVS42_17110 PF02666 CVS42_17110 CVS42_17115 PF09905 Uncharacterized conserved protein (DUF2132) CVS42_17120 PF11173 CVS42_17120 CVS42_17130 PF00171 Aldehyde dehydrogenase family CVS42_17135 PF00696 Amino acid kinase family CVS42_17135 PF01472 PUA domain CVS42_17140 PF07417 Transcriptional regulator Crl CVS42_17145 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) CVS42_17150 PF00156 Phosphoribosyl transferase domain CVS42_17160 PF01546 Peptidase family M20/M25/M40 CVS42_17160 PF07687 Peptidase dimerisation domain CVS42_17165 PF00226 DnaJ domain CVS42_17165 PF05099 Tellurite resistance protein TerB CVS42_17170 PF00483 Nucleotidyl transferase CVS42_17175 PF01636 Phosphotransferase enzyme family CVS42_17180 PF03968 OstA-like protein CVS42_17180 PF04453 Organic solvent tolerance protein CVS42_17185 PF00639 PPIC-type PPIASE domain CVS42_17185 PF09312 SurA N-terminal domain CVS42_17185 PF13616 PPIC-type PPIASE domain CVS42_17190 PF04166 Pyridoxal phosphate biosynthetic protein PdxA CVS42_17195 PF00398 Ribosomal RNA adenine dimethylase CVS42_17200 PF04379 Protein of unknown function (DUF525) CVS42_17205 PF00149 Calcineurin-like phosphoesterase CVS42_17210 PF01381 Helix-turn-helix CVS42_17210 PF13239 CVS42_17210 CVS42_17215 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_17220 PF00296 Luciferase-like monooxygenase CVS42_17230 PF07670 Nucleoside recognition CVS42_17235 PF01018 GTP1/OBG CVS42_17235 PF01926 50S ribosome-binding GTPase CVS42_17240 PF01016 Ribosomal L27 protein CVS42_17245 PF00829 Ribosomal prokaryotic L21 protein CVS42_17250 PF00348 Polyprenyl synthetase CVS42_17255 PF09838 CVS42_17255 CVS42_17260 PF01145 SPFH domain / Band 7 family CVS42_17265 PF01145 SPFH domain / Band 7 family CVS42_17265 PF12221 CVS42_17265 CVS42_17270 PF01926 50S ribosome-binding GTPase CVS42_17270 PF13167 CVS42_17270 CVS42_17270 PF16360 CVS42_17270 CVS42_17275 PF17209 CVS42_17275 CVS42_17280 PF01715 IPP transferase CVS42_17285 PF01119 DNA mismatch repair protein, C-terminal domain CVS42_17285 PF08676 MutL C terminal dimerisation domain CVS42_17285 PF13589 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_17290 PF01476 LysM domain CVS42_17290 PF01520 N-acetylmuramoyl-L-alanine amidase CVS42_17290 PF11741 AMIN domain CVS42_17295 PF02367 Uncharacterised P-loop hydrolase UPF0079 CVS42_17300 PF01256 Carbohydrate kinase CVS42_17300 PF03853 YjeF-related protein N-terminus CVS42_17305 PF08331 CVS42_17305 CVS42_17305 PF13484 CVS42_17305 CVS42_17310 PF00480 ROK family CVS42_17320 PF00005 ABC transporter CVS42_17320 PF09383 NIL domain CVS42_17325 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_17330 PF03180 NLPA lipoprotein CVS42_17335 PF02357 Transcription termination factor nusG CVS42_17340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_17340 PF00672 HAMP domain CVS42_17350 PF01966 HD domain CVS42_17350 PF13286 Phosphohydrolase-associated domain CVS42_17355 PF00072 Response regulator receiver domain CVS42_17355 PF00512 His Kinase A (phospho-acceptor) domain CVS42_17355 PF01627 Hpt domain CVS42_17355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_17355 PF08448 PAS fold CVS42_17360 PF11059 CVS42_17360 CVS42_17365 PF11813 CVS42_17365 CVS42_17370 PF01230 HIT domain CVS42_17375 PF09829 CVS42_17375 CVS42_17380 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_17380 PF03466 LysR substrate binding domain CVS42_17385 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_17390 PF01259 SAICAR synthetase CVS42_17395 PF06804 NlpB/DapX lipoprotein CVS42_17400 PF00701 Dihydrodipicolinate synthetase family CVS42_17405 PF13740 ACT domain CVS42_17410 PF00578 AhpC/TSA family CVS42_17415 PF03887 YfbU domain CVS42_17420 PF04217 CVS42_17420 CVS42_17425 PF00871 Acetokinase family CVS42_17430 PF01515 Phosphate acetyl/butaryl transferase CVS42_17430 PF07085 DRTGG domain CVS42_17430 PF13500 AAA domain CVS42_17435 PF12836 Helix-hairpin-helix motif CVS42_17440 PF00483 Nucleotidyl transferase CVS42_17445 PF00854 POT family CVS42_17450 PF00072 Response regulator receiver domain CVS42_17460 PF01695 IstB-like ATP binding protein CVS42_17465 PF13460 NADH(P)-binding CVS42_17470 PF12698 ABC-2 family transporter protein CVS42_17475 PF12698 ABC-2 family transporter protein CVS42_17480 PF13437 HlyD family secretion protein CVS42_17480 PF13533 Biotin-lipoyl like CVS42_17485 PF02321 Outer membrane efflux protein CVS42_17490 PF01207 Dihydrouridine synthase (Dus) CVS42_17495 PF02954 Bacterial regulatory protein, Fis family CVS42_17500 PF00892 EamA-like transporter family CVS42_17505 PF11299 CVS42_17505 CVS42_17515 PF01546 Peptidase family M20/M25/M40 CVS42_17515 PF07687 Peptidase dimerisation domain CVS42_17520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_17520 PF03466 LysR substrate binding domain CVS42_17525 PF01810 CVS42_17525 CVS42_17530 PF10369 Small subunit of acetolactate synthase CVS42_17530 PF13710 ACT domain CVS42_17535 PF00205 Thiamine pyrophosphate enzyme, central domain CVS42_17535 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_17535 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS42_17545 PF13528 Glycosyl transferase family 1 CVS42_17550 PF01569 PAP2 superfamily CVS42_17555 PF00440 Bacterial regulatory proteins, tetR family CVS42_17560 PF00682 HMGL-like CVS42_17560 PF08502 LeuA allosteric (dimerisation) domain CVS42_17565 PF00180 Isocitrate/isopropylmalate dehydrogenase CVS42_17570 PF00330 Aconitase family (aconitate hydratase) CVS42_17575 PF00694 Aconitase C-terminal domain CVS42_17585 PF07238 PilZ domain CVS42_17590 PF13343 Bacterial extracellular solute-binding protein CVS42_17595 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_17600 PF00005 ABC transporter CVS42_17605 PF02562 PhoH-like protein CVS42_17605 PF13638 PIN domain CVS42_17615 PF00317 Ribonucleotide reductase, all-alpha domain CVS42_17615 PF02867 Ribonucleotide reductase, barrel domain CVS42_17645 PF00563 EAL domain CVS42_17645 PF00990 GGDEF domain CVS42_17655 PF00118 TCP-1/cpn60 chaperonin family CVS42_17660 PF00166 Chaperonin 10 Kd subunit CVS42_17665 PF01554 MatE CVS42_17670 PF04186 CVS42_17670 CVS42_17675 PF00206 Lyase CVS42_17675 PF10415 Fumarase C C-terminus CVS42_17680 PF03605 CVS42_17680 CVS42_17685 PF00814 Glycoprotease family CVS42_17690 PF01165 Ribosomal protein S21 CVS42_17695 PF09424 Yqey-like protein CVS42_17700 PF01807 CHC2 zinc finger CVS42_17700 PF08275 DNA primase catalytic core, N-terminal domain CVS42_17700 PF08278 DNA primase DnaG DnaB-binding CVS42_17700 PF10410 DnaB-helicase binding domain of primase CVS42_17700 PF13662 Toprim domain CVS42_17705 PF00140 Sigma-70 factor, region 1 CVS42_17705 PF03979 Sigma-70 factor, region 1 CVS42_17705 PF04539 Sigma-70 region 3 CVS42_17705 PF04542 Sigma-70 region 2 CVS42_17705 PF04545 Sigma-70, region 4 CVS42_17705 PF04546 Sigma-70, non-essential region CVS42_17720 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_17725 PF13438 CVS42_17725 CVS42_17745 PF00772 DnaB-like helicase N terminal domain CVS42_17745 PF03796 DnaB-like helicase C terminal domain CVS42_17750 PF04492 CVS42_17750 CVS42_17755 PF05930 Prophage CP4-57 regulatory protein (AlpA) CVS42_17760 PF00589 Phage integrase family CVS42_17760 PF13356 Domain of unknown function (DUF4102) CVS42_17765 PF01292 Prokaryotic cytochrome b561 CVS42_17770 PF07361 Cytochrome b562 CVS42_17775 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CVS42_17775 PF02843 Phosphoribosylglycinamide synthetase, C domain CVS42_17775 PF02844 Phosphoribosylglycinamide synthetase, N domain CVS42_17780 PF01808 AICARFT/IMPCHase bienzyme CVS42_17780 PF02142 MGS-like domain CVS42_17785 PF13411 MerR HTH family regulatory protein CVS42_17820 PF13302 Acetyltransferase (GNAT) domain CVS42_17825 PF13302 Acetyltransferase (GNAT) domain CVS42_17830 PF01447 Thermolysin metallopeptidase, catalytic domain CVS42_17830 PF02868 Thermolysin metallopeptidase, alpha-helical domain CVS42_17830 PF03413 Peptidase propeptide and YPEB domain CVS42_17830 PF04151 Bacterial pre-peptidase C-terminal domain CVS42_17830 PF07504 Fungalysin/Thermolysin Propeptide Motif CVS42_17835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_17835 PF03466 LysR substrate binding domain CVS42_17840 PF07690 Major Facilitator Superfamily CVS42_17845 PF00583 Acetyltransferase (GNAT) family CVS42_17845 PF12802 MarR family CVS42_17850 PF00009 Elongation factor Tu GTP binding domain CVS42_17850 PF03144 Elongation factor Tu domain 2 CVS42_17850 PF16658 CVS42_17850 CVS42_17855 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_17860 PF00990 GGDEF domain CVS42_17860 PF13424 Tetratricopeptide repeat CVS42_17865 PF05762 VWA domain containing CoxE-like protein CVS42_17870 PF07728 AAA domain (dynein-related subfamily) CVS42_17870 PF12592 Protein of unknown function (DUF3763) CVS42_17875 PF03603 DNA polymerase III psi subunit CVS42_17880 PF00583 Acetyltransferase (GNAT) family CVS42_17890 PF00501 AMP-binding enzyme CVS42_17900 PF04262 Glutamate-cysteine ligase CVS42_17905 PF00675 Insulinase (Peptidase family M16) CVS42_17905 PF05193 Peptidase M16 inactive domain CVS42_17910 PF09335 CVS42_17910 CVS42_17915 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_17915 PF13602 Zinc-binding dehydrogenase CVS42_17940 PF00175 Oxidoreductase NAD-binding domain CVS42_17945 PF01281 Ribosomal protein L9, N-terminal domain CVS42_17945 PF03948 Ribosomal protein L9, C-terminal domain CVS42_17950 PF01084 Ribosomal protein S18 CVS42_17955 PF01250 Ribosomal protein S6 CVS42_17960 PF01566 CVS42_17960 CVS42_17970 PF05232 CVS42_17970 CVS42_17975 PF00216 Bacterial DNA-binding protein CVS42_17980 PF04353 Regulator of RNA polymerase sigma(70) subunit, Rsd/AlgQ CVS42_17985 PF07238 PilZ domain CVS42_17990 PF13481 AAA domain CVS42_17990 PF13541 Subunit ChlI of Mg-chelatase CVS42_17995 PF07238 PilZ domain CVS42_18000 PF00561 alpha/beta hydrolase fold CVS42_18005 PF12710 haloacid dehalogenase-like hydrolase CVS42_18010 PF10144 CVS42_18010 CVS42_18020 PF01048 Phosphorylase superfamily CVS42_18025 PF01676 Metalloenzyme superfamily CVS42_18030 PF00591 Glycosyl transferase family, a/b domain CVS42_18030 PF02885 Glycosyl transferase family, helical bundle domain CVS42_18030 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CVS42_18035 PF01791 DeoC/LacD family aldolase CVS42_18045 PF01773 Na+ dependent nucleoside transporter N-terminus CVS42_18045 PF07662 Na+ dependent nucleoside transporter C-terminus CVS42_18045 PF07670 Nucleoside recognition CVS42_18050 PF01026 TatD related DNase CVS42_18055 PF07963 Prokaryotic N-terminal methylation motif CVS42_18060 PF17320 CVS42_18060 CVS42_18065 PF02664 S-Ribosylhomocysteinase (LuxS) CVS42_18075 PF00543 Nitrogen regulatory protein P-II CVS42_18080 PF00795 Carbon-nitrogen hydrolase CVS42_18080 PF02540 NAD synthase CVS42_18085 PF07963 Prokaryotic N-terminal methylation motif CVS42_18095 PF07963 Prokaryotic N-terminal methylation motif CVS42_18100 PF07963 Prokaryotic N-terminal methylation motif CVS42_18100 PF12019 Type II transport protein GspH CVS42_18105 PF07963 Prokaryotic N-terminal methylation motif CVS42_18105 PF16732 CVS42_18105 CVS42_18110 PF07963 Prokaryotic N-terminal methylation motif CVS42_18110 PF16732 CVS42_18110 CVS42_18115 PF05567 Neisseria PilC beta-propeller domain CVS42_18120 PF13681 CVS42_18120 CVS42_18120 PF14341 CVS42_18120 CVS42_18125 PF16074 CVS42_18125 CVS42_18130 PF07963 Prokaryotic N-terminal methylation motif CVS42_18135 PF07963 Prokaryotic N-terminal methylation motif CVS42_18135 PF12019 Type II transport protein GspH CVS42_18140 PF02401 LytB protein CVS42_18145 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CVS42_18150 PF01252 CVS42_18150 CVS42_18155 PF00133 tRNA synthetases class I (I, L, M and V) CVS42_18155 PF06827 Zinc finger found in FPG and IleRS CVS42_18155 PF08264 Anticodon-binding domain of tRNA CVS42_18160 PF01687 Riboflavin kinase CVS42_18160 PF06574 FAD synthetase CVS42_18165 PF03023 CVS42_18165 CVS42_18170 PF01649 Ribosomal protein S20 CVS42_18175 PF01022 Bacterial regulatory protein, arsR family CVS42_18180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_18180 PF03466 LysR substrate binding domain CVS42_18190 PF06965 Na+/H+ antiporter 1 CVS42_18195 PF00303 Thymidylate synthase CVS42_18200 PF01790 CVS42_18200 CVS42_18205 PF00391 PEP-utilising enzyme, mobile domain CVS42_18205 PF01590 GAF domain CVS42_18205 PF02896 PEP-utilising enzyme, TIM barrel domain CVS42_18205 PF05524 PEP-utilising enzyme, N-terminal CVS42_18210 PF00293 NUDIX domain CVS42_18215 PF02976 DNA mismatch repair enzyme MutH CVS42_18225 PF01245 Ribosomal protein L19 CVS42_18230 PF01746 tRNA (Guanine-1)-methyltransferase CVS42_18235 PF01782 RimM N-terminal domain CVS42_18235 PF05239 PRC-barrel domain CVS42_18240 PF00886 Ribosomal protein S16 CVS42_18245 PF00448 SRP54-type protein, GTPase domain CVS42_18245 PF02881 SRP54-type protein, helical bundle domain CVS42_18245 PF02978 Signal peptide binding domain CVS42_18250 PF01578 CVS42_18250 CVS42_18255 PF00571 CBS domain CVS42_18255 PF01595 CVS42_18255 CVS42_18255 PF03471 Transporter associated domain CVS42_18260 PF02082 Transcriptional regulator CVS42_18265 PF00042 Globin CVS42_18265 PF00175 Oxidoreductase NAD-binding domain CVS42_18265 PF00970 Oxidoreductase FAD-binding domain CVS42_18275 PF00056 lactate/malate dehydrogenase, NAD binding domain CVS42_18275 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CVS42_18280 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_18285 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_18290 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_18295 PF00005 ABC transporter CVS42_18300 PF01316 Arginine repressor, DNA binding domain CVS42_18300 PF02863 Arginine repressor, C-terminal domain CVS42_18305 PF04261 Dyp-type peroxidase family CVS42_18310 PF00005 ABC transporter CVS42_18315 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_18320 PF13343 Bacterial extracellular solute-binding protein CVS42_18325 PF00543 Nitrogen regulatory protein P-II CVS42_18330 PF00472 RF-1 domain CVS42_18335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CVS42_18335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CVS42_18345 PF03883 CVS42_18345 CVS42_18350 PF00437 Type II/IV secretion system protein CVS42_18355 PF00437 Type II/IV secretion system protein CVS42_18360 PF01168 Alanine racemase, N-terminal domain CVS42_18365 PF03807 NADP oxidoreductase coenzyme F420-dependent CVS42_18365 PF14748 Pyrroline-5-carboxylate reductase dimerisation CVS42_18370 PF02325 CVS42_18370 CVS42_18375 PF02594 Uncharacterised ACR, YggU family COG1872 CVS42_18380 PF14467 Domain of unknown function (DUF4426) CVS42_18385 PF01773 Na+ dependent nucleoside transporter N-terminus CVS42_18385 PF07662 Na+ dependent nucleoside transporter C-terminus CVS42_18385 PF07670 Nucleoside recognition CVS42_18390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_18390 PF03466 LysR substrate binding domain CVS42_18395 PF00255 Glutathione peroxidase CVS42_18400 PF07298 CVS42_18400 CVS42_18405 PF02595 Glycerate kinase family CVS42_18410 PF02447 CVS42_18410 CVS42_18415 PF05651 CVS42_18415 CVS42_18415 PF13556 PucR C-terminal helix-turn-helix domain CVS42_18420 PF06062 CVS42_18420 CVS42_18430 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_18435 PF02517 CAAX protease self-immunity CVS42_18440 PF03372 Endonuclease/Exonuclease/phosphatase family CVS42_18450 PF00270 DEAD/DEAH box helicase CVS42_18450 PF00271 Helicase conserved C-terminal domain CVS42_18455 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_18460 PF08534 Redoxin CVS42_18465 PF00122 E1-E2 ATPase CVS42_18465 PF00403 Heavy-metal-associated domain CVS42_18465 PF00702 haloacid dehalogenase-like hydrolase CVS42_18470 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CVS42_18470 PF03714 Bacterial pullanase-associated domain CVS42_18470 PF11852 Domain of unknown function (DUF3372) CVS42_18480 PF01545 Cation efflux family CVS42_18485 PF02583 Metal-sensitive transcriptional repressor CVS42_18490 PF00155 Aminotransferase class I and II CVS42_18495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_18495 PF03466 LysR substrate binding domain CVS42_18500 PF08850 CVS42_18500 CVS42_18505 PF04055 Radical SAM superfamily CVS42_18505 PF13353 4Fe-4S single cluster domain CVS42_18510 PF11230 CVS42_18510 CVS42_18515 PF03734 L,D-transpeptidase catalytic domain CVS42_18520 PF03572 Peptidase family S41 CVS42_18520 PF07676 WD40-like Beta Propeller Repeat CVS42_18520 PF14684 Tricorn protease C1 domain CVS42_18525 PF01794 CVS42_18525 CVS42_18525 PF08022 CVS42_18525 CVS42_18540 PF13641 Glycosyltransferase like family 2 CVS42_18545 PF01522 Polysaccharide deacetylase CVS42_18545 PF14883 Hypothetical glycosyl hydrolase family 13 CVS42_18555 PF14488 Domain of unknown function (DUF4434) CVS42_18560 PF13283 CVS42_18560 CVS42_18560 PF14559 Tetratricopeptide repeat CVS42_18565 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS42_18565 PF13632 Glycosyl transferase family group 2 CVS42_18570 PF02350 UDP-N-acetylglucosamine 2-epimerase CVS42_18575 PF01432 Peptidase family M3 CVS42_18580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_18580 PF00672 HAMP domain CVS42_18580 PF17200 CVS42_18580 CVS42_18585 PF03067 Chitin binding domain CVS42_18590 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_18590 PF03466 LysR substrate binding domain CVS42_18595 PF00005 ABC transporter CVS42_18595 PF12857 CVS42_18595 CVS42_18600 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_18605 PF00528 Binding-protein-dependent transport system inner membrane component CVS42_18610 PF06821 Serine hydrolase CVS42_18615 PF13531 Bacterial extracellular solute-binding protein CVS42_18620 PF02308 CVS42_18620 CVS42_18620 PF13194 CVS42_18620 CVS42_18625 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_18625 PF12464 Maltose acetyltransferase CVS42_18630 PF06961 CVS42_18630 CVS42_18640 PF00702 haloacid dehalogenase-like hydrolase CVS42_18645 PF00293 NUDIX domain CVS42_18650 PF00459 Inositol monophosphatase family CVS42_18655 PF03222 Tryptophan/tyrosine permease family CVS42_18660 PF01588 Putative tRNA binding domain CVS42_18665 PF02311 AraC-like ligand binding domain CVS42_18665 PF12833 Helix-turn-helix domain CVS42_18670 PF01340 Met Apo-repressor, MetJ CVS42_18675 PF01053 Cys/Met metabolism PLP-dependent enzyme CVS42_18680 PF00696 Amino acid kinase family CVS42_18680 PF00742 Homoserine dehydrogenase CVS42_18680 PF03447 Homoserine dehydrogenase, NAD binding domain CVS42_18690 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS42_18690 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_18695 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CVS42_18695 PF00364 Biotin-requiring enzyme CVS42_18695 PF02817 e3 binding domain CVS42_18700 PF00456 Transketolase, thiamine diphosphate binding domain CVS42_18705 PF00392 Bacterial regulatory proteins, gntR family CVS42_18705 PF07729 FCD domain CVS42_18710 PF01510 N-acetylmuramoyl-L-alanine amidase CVS42_18715 PF13975 CVS42_18715 CVS42_18720 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CVS42_18720 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CVS42_18730 PF07963 Prokaryotic N-terminal methylation motif CVS42_18735 PF00437 Type II/IV secretion system protein CVS42_18735 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS42_18740 PF00482 Type II secretion system (T2SS), protein F CVS42_18745 PF01478 Type IV leader peptidase family CVS42_18745 PF06750 CVS42_18745 CVS42_18750 PF01121 Dephospho-CoA kinase CVS42_18755 PF07072 Protein of unknown function (DUF1342) CVS42_18760 PF03884 Domain of unknown function (DUF329) CVS42_18765 PF00293 NUDIX domain CVS42_18770 PF01043 SecA preprotein cross-linking domain CVS42_18770 PF02810 SEC-C motif CVS42_18770 PF07516 SecA Wing and Scaffold domain CVS42_18770 PF07517 SecA DEAD-like domain CVS42_18775 PF01551 Peptidase family M23 CVS42_18780 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CVS42_18785 PF00091 Tubulin/FtsZ family, GTPase domain CVS42_18785 PF12327 FtsZ family, C-terminal domain CVS42_18790 PF02491 SHS2 domain inserted in FTSA CVS42_18790 PF14450 Cell division protein FtsA CVS42_18795 PF03799 Cell division protein FtsQ CVS42_18795 PF08478 POTRA domain, FtsQ-type CVS42_18800 PF01225 Mur ligase family, catalytic domain CVS42_18800 PF02875 Mur ligase family, glutamate ligase domain CVS42_18800 PF08245 Mur ligase middle domain CVS42_18805 PF03033 Glycosyltransferase family 28 N-terminal domain CVS42_18805 PF04101 Glycosyltransferase family 28 C-terminal domain CVS42_18810 PF01098 CVS42_18810 CVS42_18815 PF02875 Mur ligase family, glutamate ligase domain CVS42_18815 PF08245 Mur ligase middle domain CVS42_18820 PF00953 Glycosyl transferase family 4 CVS42_18820 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CVS42_18825 PF01225 Mur ligase family, catalytic domain CVS42_18825 PF02875 Mur ligase family, glutamate ligase domain CVS42_18825 PF08245 Mur ligase middle domain CVS42_18830 PF01225 Mur ligase family, catalytic domain CVS42_18830 PF02875 Mur ligase family, glutamate ligase domain CVS42_18830 PF08245 Mur ligase middle domain CVS42_18835 PF00905 Penicillin binding protein transpeptidase domain CVS42_18835 PF03717 Penicillin-binding Protein dimerisation domain CVS42_18840 PF04999 CVS42_18840 CVS42_18845 PF01795 MraW methylase family CVS42_18850 PF02381 MraZ protein CVS42_18860 PF01464 Transglycosylase SLT domain CVS42_18870 PF00691 OmpA family CVS42_18870 PF13677 CVS42_18870 CVS42_18875 PF01618 CVS42_18875 CVS42_18880 PF04539 Sigma-70 region 3 CVS42_18880 PF04542 Sigma-70 region 2 CVS42_18880 PF04545 Sigma-70, region 4 CVS42_18885 PF03748 CVS42_18885 CVS42_18890 PF02120 Flagellar hook-length control protein FliK CVS42_18900 PF02561 Flagellar protein FliS CVS42_18905 PF02465 CVS42_18905 CVS42_18905 PF07195 CVS42_18905 CVS42_18905 PF07196 Flagellin hook IN motif CVS42_18910 PF00700 Bacterial flagellin C-terminal helical region CVS42_18925 PF00669 Bacterial flagellin N-terminal helical region CVS42_18930 PF00460 Flagella basal body rod protein CVS42_18930 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_18935 PF10135 CVS42_18935 CVS42_18940 PF02119 CVS42_18940 CVS42_18945 PF02107 CVS42_18945 CVS42_18950 PF00460 Flagella basal body rod protein CVS42_18950 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_18955 PF00460 Flagella basal body rod protein CVS42_18955 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_18960 PF00460 Flagella basal body rod protein CVS42_18960 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_18960 PF07559 Flagellar basal body protein FlaE CVS42_18965 PF03963 CVS42_18965 CVS42_18965 PF13860 FlgD Ig-like domain CVS42_18965 PF13861 FlgD Tudor-like domain CVS42_18970 PF00460 Flagella basal body rod protein CVS42_18970 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CVS42_18980 PF13144 SAF-like CVS42_18985 PF04316 Anti-sigma-28 factor, FlgM CVS42_18990 PF05130 FlgN protein CVS42_18995 PF02050 Flagellar FliJ protein CVS42_19000 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_19005 PF02108 CVS42_19005 CVS42_19010 PF01706 FliG C-terminal domain CVS42_19010 PF14841 FliG middle domain CVS42_19010 PF14842 FliG N-terminal domain CVS42_19015 PF01514 Secretory protein of YscJ/FliF family CVS42_19015 PF08345 CVS42_19015 CVS42_19020 PF02049 CVS42_19020 CVS42_19025 PF00072 Response regulator receiver domain CVS42_19025 PF00158 Sigma-54 interaction domain CVS42_19025 PF02954 Bacterial regulatory protein, Fis family CVS42_19030 PF00771 FHIPEP family CVS42_19035 PF01312 FlhB HrpN YscU SpaS Family CVS42_19040 PF01311 CVS42_19040 CVS42_19045 PF01313 CVS42_19045 CVS42_19050 PF00813 CVS42_19050 CVS42_19055 PF01052 Surface presentation of antigens (SPOA) CVS42_19060 PF01052 Surface presentation of antigens (SPOA) CVS42_19070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CVS42_19075 PF04348 LppC putative lipoprotein CVS42_19080 PF02021 Uncharacterised protein family UPF0102 CVS42_19085 PF13580 SIS domain CVS42_19090 PF04972 BON domain CVS42_19095 PF04386 Stringent starvation protein B CVS42_19100 PF00043 Glutathione S-transferase, C-terminal domain CVS42_19100 PF02798 Glutathione S-transferase, N-terminal domain CVS42_19105 PF02167 Cytochrome C1 family CVS42_19110 PF00032 Cytochrome b(C-terminal)/b6/petD CVS42_19110 PF00033 Cytochrome b(N-terminal)/b6/petB CVS42_19115 PF00355 Rieske [2Fe-2S] domain CVS42_19115 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal CVS42_19120 PF00380 Ribosomal protein S9/S16 CVS42_19125 PF00572 Ribosomal protein L13 CVS42_19130 PF03969 AFG1-like ATPase CVS42_19135 PF06295 CVS42_19135 CVS42_19140 PF13180 PDZ domain CVS42_19140 PF13365 Trypsin-like peptidase domain CVS42_19145 PF13180 PDZ domain CVS42_19145 PF13365 Trypsin-like peptidase domain CVS42_19155 PF14272 CVS42_19155 CVS42_19160 PF14189 CVS42_19160 CVS42_19165 PF14188 CVS42_19165 CVS42_19170 PF14187 CVS42_19170 CVS42_19175 PF01979 Amidohydrolase family CVS42_19180 PF03841 L-seryl-tRNA selenium transferase CVS42_19185 PF07071 Protein of unknown function (DUF1341) CVS42_19190 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_19190 PF00874 PRD domain CVS42_19190 PF05043 Mga helix-turn-helix domain CVS42_19190 PF08279 HTH domain CVS42_19195 PF00381 PTS HPr component phosphorylation site CVS42_19200 PF03668 CVS42_19200 CVS42_19205 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CVS42_19210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CVS42_19215 PF00309 CVS42_19215 CVS42_19215 PF04552 Sigma-54, DNA binding domain CVS42_19215 PF04963 Sigma-54 factor, core binding domain CVS42_19220 PF00005 ABC transporter CVS42_19220 PF12399 Branched-chain amino acid ATP-binding cassette transporter CVS42_19225 PF03968 OstA-like protein CVS42_19230 PF06835 Lipopolysaccharide-assembly, LptC-related CVS42_19235 PF08282 haloacid dehalogenase-like hydrolase CVS42_19240 PF00571 CBS domain CVS42_19240 PF01380 SIS domain CVS42_19245 PF00005 ABC transporter CVS42_19250 PF02405 CVS42_19250 CVS42_19255 PF02470 CVS42_19255 CVS42_19260 PF05494 Toluene tolerance, Ttg2 CVS42_19265 PF13466 STAS domain CVS42_19270 PF01722 BolA-like protein CVS42_19275 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CVS42_19280 PF01523 Putative modulator of DNA gyrase CVS42_19285 PF04751 Protein of unknown function (DUF615) CVS42_19290 PF07722 Peptidase C26 CVS42_19300 PF00027 Cyclic nucleotide-binding domain CVS42_19300 PF00924 Mechanosensitive ion channel CVS42_19310 PF13419 Haloacid dehalogenase-like hydrolase CVS42_19315 PF00589 Phage integrase family CVS42_19315 PF02899 Phage integrase, N-terminal SAM-like domain CVS42_19320 PF04340 Protein of unknown function, DUF484 CVS42_19325 PF01678 Diaminopimelate epimerase CVS42_19330 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CVS42_19330 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CVS42_19335 PF13627 CVS42_19335 CVS42_19340 PF01491 Frataxin-like domain CVS42_19345 PF02230 Phospholipase/Carboxylesterase CVS42_19350 PF01295 CVS42_19350 CVS42_19350 PF12633 CVS42_19350 CVS42_19355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CVS42_19355 PF03900 Porphobilinogen deaminase, C-terminal domain CVS42_19360 PF02602 Uroporphyrinogen-III synthase HemD CVS42_19365 PF04375 CVS42_19365 CVS42_19370 PF07219 CVS42_19370 CVS42_19380 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CVS42_19385 PF13609 Gram-negative porin CVS42_19390 PF04392 ABC transporter substrate binding protein CVS42_19395 PF00892 EamA-like transporter family CVS42_19400 PF00324 Amino acid permease CVS42_19405 PF00768 D-alanyl-D-alanine carboxypeptidase CVS42_19410 PF01757 CVS42_19410 CVS42_19415 PF00593 TonB dependent receptor CVS42_19415 PF07715 TonB-dependent Receptor Plug Domain CVS42_19420 PF16357 CVS42_19420 CVS42_19425 PF05638 Protein of unknown function (DUF796) CVS42_19430 PF05954 Phage late control gene D protein (GPD) CVS42_19435 PF08786 Domain of unknown function (DUF1795) CVS42_19440 PF05488 PAAR motif CVS42_19440 PF05593 CVS42_19440 CVS42_19440 PF14412 CVS42_19440 CVS42_19450 PF13930 DNA/RNA non-specific endonuclease CVS42_19455 PF15655 CVS42_19455 CVS42_19460 PF14412 CVS42_19460 CVS42_19470 PF08238 Sel1 repeat CVS42_19480 PF00665 Integrase core domain CVS42_19485 PF01695 IstB-like ATP binding protein CVS42_19485 PF08483 CVS42_19485 CVS42_19500 PF03775 Septum formation inhibitor MinC, C-terminal domain CVS42_19500 PF05209 Septum formation inhibitor MinC, N-terminal domain CVS42_19505 PF05166 YcgL domain CVS42_19515 PF01384 CVS42_19515 CVS42_19520 PF01865 Protein of unknown function DUF47 CVS42_19525 PF01928 CYTH domain CVS42_19530 PF00701 Dihydrodipicolinate synthetase family CVS42_19535 PF05175 Methyltransferase small domain CVS42_19535 PF08468 Methyltransferase small domain N-terminal CVS42_19540 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_19540 PF00483 Nucleotidyl transferase CVS42_19545 PF00534 Glycosyl transferases group 1 CVS42_19545 PF08323 Starch synthase catalytic domain CVS42_19575 PF10719 CVS42_19575 CVS42_19585 PF03553 CVS42_19585 CVS42_19590 PF01521 Iron-sulphur cluster biosynthesis CVS42_19600 PF00654 Voltage gated chloride channel CVS42_19605 PF00202 Aminotransferase class-III CVS42_19625 PF13462 Thioredoxin CVS42_19640 PF00176 SNF2 family N-terminal domain CVS42_19640 PF00271 Helicase conserved C-terminal domain CVS42_19640 PF12137 RNA polymerase recycling family C-terminal CVS42_19645 PF00849 RNA pseudouridylate synthase CVS42_19660 PF12464 Maltose acetyltransferase CVS42_19660 PF14602 Hexapeptide repeat of succinyl-transferase CVS42_19665 PF00128 Alpha amylase, catalytic domain CVS42_19665 PF16657 CVS42_19665 CVS42_19670 PF00367 phosphotransferase system, EIIB CVS42_19670 PF02378 Phosphotransferase system, EIIC CVS42_19675 PF00356 Bacterial regulatory proteins, lacI family CVS42_19675 PF13377 Periplasmic binding protein-like domain CVS42_19680 PF03547 CVS42_19680 CVS42_19685 PF00403 Heavy-metal-associated domain CVS42_19690 PF00710 Asparaginase CVS42_19695 PF00571 CBS domain CVS42_19695 PF01595 CVS42_19695 CVS42_19695 PF03471 Transporter associated domain CVS42_19700 PF09335 CVS42_19700 CVS42_19705 PF00768 D-alanyl-D-alanine carboxypeptidase CVS42_19740 PF02599 Global regulator protein family CVS42_19745 PF00696 Amino acid kinase family CVS42_19745 PF01842 ACT domain CVS42_19745 PF13840 ACT domain CVS42_19750 PF01411 tRNA synthetases class II (A) CVS42_19750 PF02272 DHHA1 domain CVS42_19750 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CVS42_19755 PF02631 RecX family CVS42_19760 PF00154 recA bacterial DNA recombination protein CVS42_19765 PF02464 Competence-damaged protein CVS42_19770 PF00488 MutS domain V CVS42_19770 PF01624 MutS domain I CVS42_19770 PF05188 MutS domain II CVS42_19770 PF05190 MutS family domain IV CVS42_19770 PF05192 MutS domain III CVS42_19775 PF01734 Patatin-like phospholipase CVS42_19785 PF04172 CVS42_19785 CVS42_19790 PF03788 CVS42_19790 CVS42_19795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_19795 PF03466 LysR substrate binding domain CVS42_19805 PF04073 Aminoacyl-tRNA editing domain CVS42_19845 PF05940 CVS42_19845 CVS42_19850 PF01381 Helix-turn-helix CVS42_19850 PF07883 Cupin domain CVS42_19855 PF03594 CVS42_19855 CVS42_19860 PF11301 CVS42_19860 CVS42_19865 PF02219 Methylenetetrahydrofolate reductase CVS42_19870 PF13673 Acetyltransferase (GNAT) domain CVS42_19875 PF01547 Bacterial extracellular solute-binding protein CVS42_19880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_19880 PF12729 CVS42_19880 CVS42_19885 PF03922 OmpW family CVS42_19890 PF00990 GGDEF domain CVS42_19890 PF05228 CVS42_19890 CVS42_19895 PF00005 ABC transporter CVS42_19900 PF00436 Single-strand binding protein family CVS42_19905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_19915 PF01545 Cation efflux family CVS42_19915 PF16916 CVS42_19915 CVS42_19920 PF11656 CVS42_19920 CVS42_19925 PF00313 'Cold-shock' DNA-binding domain CVS42_19930 PF00860 Permease family CVS42_19935 PF02733 Dak1 domain CVS42_19940 PF02734 DAK2 domain CVS42_19945 PF00381 PTS HPr component phosphorylation site CVS42_19945 PF03610 PTS system fructose IIA component CVS42_19950 PF00465 Iron-containing alcohol dehydrogenase CVS42_19955 PF00158 Sigma-54 interaction domain CVS42_19955 PF00989 PAS fold CVS42_19955 PF02954 Bacterial regulatory protein, Fis family CVS42_19960 PF09509 CVS42_19960 CVS42_19970 PF01594 CVS42_19970 CVS42_19975 PF00293 NUDIX domain CVS42_19975 PF01569 PAP2 superfamily CVS42_19985 PF01479 S4 domain CVS42_19990 PF01430 Hsp33 protein CVS42_19995 PF01293 Phosphoenolpyruvate carboxykinase CVS42_20000 PF00392 Bacterial regulatory proteins, gntR family CVS42_20000 PF07729 FCD domain CVS42_20005 PF00557 Metallopeptidase family M24 CVS42_20005 PF01321 Creatinase/Prolidase N-terminal domain CVS42_20005 PF16188 CVS42_20005 CVS42_20005 PF16189 CVS42_20005 CVS42_20010 PF11756 CVS42_20010 CVS42_20015 PF00583 Acetyltransferase (GNAT) family CVS42_20020 PF05433 CVS42_20020 CVS42_20025 PF00909 Ammonium Transporter Family CVS42_20030 PF00990 GGDEF domain CVS42_20035 PF13505 Outer membrane protein beta-barrel domain CVS42_20040 PF06055 CVS42_20040 CVS42_20050 PF00990 GGDEF domain CVS42_20060 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_20065 PF13673 Acetyltransferase (GNAT) domain CVS42_20075 PF13166 CVS42_20075 CVS42_20080 PF04055 Radical SAM superfamily CVS42_20080 PF06968 Biotin and Thiamin Synthesis associated domain CVS42_20085 PF05690 Thiazole biosynthesis protein ThiG CVS42_20090 PF02597 ThiS family CVS42_20095 PF00899 ThiF family CVS42_20100 PF02581 Thiamine monophosphate synthase/TENI CVS42_20100 PF08543 Phosphomethylpyrimidine kinase CVS42_20105 PF01964 ThiC family CVS42_20105 PF13667 ThiC-associated domain CVS42_20110 PF03738 Glutathionylspermidine synthase preATP-grasp CVS42_20115 PF06693 CVS42_20115 CVS42_20120 PF03994 CVS42_20120 CVS42_20125 PF01117 Aerolysin toxin CVS42_20125 PF03440 Aerolysin/Pertussis toxin (APT) domain CVS42_20140 PF00072 Response regulator receiver domain CVS42_20140 PF00486 Transcriptional regulatory protein, C terminal CVS42_20145 PF00512 His Kinase A (phospho-acceptor) domain CVS42_20150 PF08443 RimK-like ATP-grasp domain CVS42_20155 PF00809 Pterin binding enzyme CVS42_20155 PF02310 B12 binding domain CVS42_20155 PF02574 Homocysteine S-methyltransferase CVS42_20155 PF02607 B12 binding domain CVS42_20155 PF02965 Vitamin B12 dependent methionine synthase, activation domain CVS42_20160 PF00999 Sodium/hydrogen exchanger family CVS42_20170 PF13302 Acetyltransferase (GNAT) domain CVS42_20175 PF08668 HDOD domain CVS42_20185 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CVS42_20190 PF01902 ATP-binding region CVS42_20195 PF07690 Major Facilitator Superfamily CVS42_20200 PF01914 CVS42_20200 CVS42_20210 PF01523 Putative modulator of DNA gyrase CVS42_20215 PF00795 Carbon-nitrogen hydrolase CVS42_20220 PF01909 Nucleotidyltransferase domain CVS42_20225 PF07876 Stress responsive A/B Barrel Domain CVS42_20230 PF13116 CVS42_20230 CVS42_20230 PF13502 CVS42_20230 CVS42_20235 PF00575 S1 RNA binding domain CVS42_20235 PF10150 Ribonuclease E/G family CVS42_20240 PF02545 Maf-like protein CVS42_20245 PF04093 CVS42_20245 CVS42_20250 PF04085 rod shape-determining protein MreC CVS42_20255 PF06723 MreB/Mbl protein CVS42_20270 PF07963 Prokaryotic N-terminal methylation motif CVS42_20275 PF07963 Prokaryotic N-terminal methylation motif CVS42_20280 PF07963 Prokaryotic N-terminal methylation motif CVS42_20285 PF07963 Prokaryotic N-terminal methylation motif CVS42_20290 PF07963 Prokaryotic N-terminal methylation motif CVS42_20300 PF00482 Type II secretion system (T2SS), protein F CVS42_20305 PF00437 Type II/IV secretion system protein CVS42_20305 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CVS42_20310 PF13432 Tetratricopeptide repeat CVS42_20310 PF14559 Tetratricopeptide repeat CVS42_20315 PF13401 AAA domain CVS42_20320 PF00263 CVS42_20320 CVS42_20320 PF07655 CVS42_20320 CVS42_20345 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_20350 PF00563 EAL domain CVS42_20350 PF00990 GGDEF domain CVS42_20350 PF17157 CVS42_20350 CVS42_20355 PF00563 EAL domain CVS42_20360 PF01699 Sodium/calcium exchanger protein CVS42_20365 PF00221 Aromatic amino acid lyase CVS42_20370 PF01175 Urocanase CVS42_20370 PF17391 CVS42_20370 CVS42_20370 PF17392 CVS42_20370 CVS42_20375 PF00491 Arginase family CVS42_20380 PF01979 Amidohydrolase family CVS42_20385 PF00392 Bacterial regulatory proteins, gntR family CVS42_20385 PF07702 UTRA domain CVS42_20390 PF00484 Carbonic anhydrase CVS42_20395 PF00140 Sigma-70 factor, region 1 CVS42_20395 PF04542 Sigma-70 region 2 CVS42_20395 PF04545 Sigma-70, region 4 CVS42_20405 PF00005 ABC transporter CVS42_20410 PF00448 SRP54-type protein, GTPase domain CVS42_20410 PF02881 SRP54-type protein, helical bundle domain CVS42_20415 PF03602 Conserved hypothetical protein 95 CVS42_20420 PF06611 CVS42_20420 CVS42_20425 PF13280 CVS42_20425 CVS42_20430 PF04247 CVS42_20430 CVS42_20435 PF00999 Sodium/hydrogen exchanger family CVS42_20435 PF02254 TrkA-N domain CVS42_20440 PF02525 Flavodoxin-like fold CVS42_20445 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_20445 PF03466 LysR substrate binding domain CVS42_20450 PF00106 short chain dehydrogenase CVS42_20460 PF04214 CVS42_20460 CVS42_20465 PF00326 Prolyl oligopeptidase family CVS42_20465 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain CVS42_20470 PF16868 CVS42_20470 CVS42_20475 PF06808 CVS42_20475 CVS42_20475 PF11874 CVS42_20475 CVS42_20480 PF13091 PLD-like domain CVS42_20485 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_20485 PF01464 Transglycosylase SLT domain CVS42_20490 PF04175 Protein of unknown function (DUF406) CVS42_20495 PF02416 mttA/Hcf106 family CVS42_20500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_20500 PF03466 LysR substrate binding domain CVS42_20505 PF01914 CVS42_20505 CVS42_20510 PF10678 CVS42_20510 CVS42_20515 PF00375 Sodium:dicarboxylate symporter family CVS42_20520 PF09413 Domain of unknown function (DUF2007) CVS42_20525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_20525 PF03466 LysR substrate binding domain CVS42_20530 PF00529 HlyD family secretion protein CVS42_20530 PF16576 CVS42_20530 CVS42_20535 PF07690 Major Facilitator Superfamily CVS42_20540 PF07947 CVS42_20540 CVS42_20550 PF00487 CVS42_20550 CVS42_20555 PF00440 Bacterial regulatory proteins, tetR family CVS42_20560 PF07226 CVS42_20560 CVS42_20590 PF13242 HAD-hyrolase-like CVS42_20595 PF00009 Elongation factor Tu GTP binding domain CVS42_20595 PF03143 Elongation factor Tu C-terminal domain CVS42_20595 PF03144 Elongation factor Tu domain 2 CVS42_20600 PF00009 Elongation factor Tu GTP binding domain CVS42_20600 PF00679 Elongation factor G C-terminus CVS42_20600 PF03144 Elongation factor Tu domain 2 CVS42_20600 PF03764 Elongation factor G, domain IV CVS42_20600 PF14492 Elongation Factor G, domain II CVS42_20605 PF00177 Ribosomal protein S7p/S5e CVS42_20610 PF00164 Ribosomal protein S12/S23 CVS42_20615 PF04077 DsrH like protein CVS42_20620 PF02635 DsrE/DsrF-like family CVS42_20625 PF02635 DsrE/DsrF-like family CVS42_20630 PF01042 Endoribonuclease L-PSP CVS42_20635 PF08348 CVS42_20635 CVS42_20635 PF13309 CVS42_20635 CVS42_20640 PF00623 RNA polymerase Rpb1, domain 2 CVS42_20640 PF04983 RNA polymerase Rpb1, domain 3 CVS42_20640 PF04997 RNA polymerase Rpb1, domain 1 CVS42_20640 PF04998 RNA polymerase Rpb1, domain 5 CVS42_20640 PF05000 RNA polymerase Rpb1, domain 4 CVS42_20645 PF00562 RNA polymerase Rpb2, domain 6 CVS42_20645 PF04560 RNA polymerase Rpb2, domain 7 CVS42_20645 PF04561 RNA polymerase Rpb2, domain 2 CVS42_20645 PF04563 RNA polymerase beta subunit CVS42_20645 PF04565 RNA polymerase Rpb2, domain 3 CVS42_20645 PF10385 RNA polymerase beta subunit external 1 domain CVS42_20650 PF00542 Ribosomal protein L7/L12 C-terminal domain CVS42_20650 PF16320 CVS42_20650 CVS42_20655 PF00466 Ribosomal protein L10 CVS42_20660 PF00687 Ribosomal protein L1p/L10e family CVS42_20665 PF00298 Ribosomal protein L11, RNA binding domain CVS42_20665 PF03946 Ribosomal protein L11, N-terminal domain CVS42_20670 PF00467 KOW motif CVS42_20670 PF02357 Transcription termination factor nusG CVS42_20675 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CVS42_20685 PF00009 Elongation factor Tu GTP binding domain CVS42_20685 PF03143 Elongation factor Tu C-terminal domain CVS42_20685 PF03144 Elongation factor Tu domain 2 CVS42_20700 PF00485 Phosphoribulokinase / Uridine kinase family CVS42_20705 PF02237 Biotin protein ligase C terminal domain CVS42_20705 PF03099 Biotin/lipoate A/B protein ligase family CVS42_20705 PF08279 HTH domain CVS42_20710 PF01565 FAD binding domain CVS42_20710 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CVS42_20715 PF02254 TrkA-N domain CVS42_20720 PF02386 Cation transport protein CVS42_20725 PF12833 Helix-turn-helix domain CVS42_20725 PF12852 Cupin CVS42_20730 PF02627 Carboxymuconolactone decarboxylase family CVS42_20735 PF04224 CVS42_20735 CVS42_20740 PF01131 DNA topoisomerase CVS42_20740 PF01751 Toprim domain CVS42_20745 PF00072 Response regulator receiver domain CVS42_20750 PF00027 Cyclic nucleotide-binding domain CVS42_20750 PF00512 His Kinase A (phospho-acceptor) domain CVS42_20750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_20755 PF03264 NapC/NirT cytochrome c family, N-terminal region CVS42_20760 PF00384 Molybdopterin oxidoreductase CVS42_20760 PF01568 Molydopterin dinucleotide binding domain CVS42_20760 PF10518 TAT (twin-arginine translocation) pathway signal sequence CVS42_20770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_20775 PF00072 Response regulator receiver domain CVS42_20775 PF00486 Transcriptional regulatory protein, C terminal CVS42_20785 PF13670 CVS42_20785 CVS42_20790 PF01794 CVS42_20790 CVS42_20795 PF00174 Oxidoreductase molybdopterin binding domain CVS42_20805 PF06496 CVS42_20805 CVS42_20810 PF00072 Response regulator receiver domain CVS42_20810 PF00158 Sigma-54 interaction domain CVS42_20820 PF00512 His Kinase A (phospho-acceptor) domain CVS42_20820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_20830 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CVS42_20835 PF13561 Enoyl-(Acyl carrier protein) reductase CVS42_20840 PF00571 CBS domain CVS42_20845 PF10063 CVS42_20845 CVS42_20850 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_20855 PF01037 AsnC family CVS42_20855 PF13412 Winged helix-turn-helix DNA-binding CVS42_20860 PF03590 Aspartate-ammonia ligase CVS42_20865 PF00004 ATPase family associated with various cellular activities (AAA) CVS42_20865 PF02861 Clp amino terminal domain CVS42_20865 PF07724 AAA domain (Cdc48 subfamily) CVS42_20865 PF10431 C-terminal, D2-small domain, of ClpB protein CVS42_20870 PF02578 Multi-copper polyphenol oxidoreductase laccase CVS42_20875 PF00849 RNA pseudouridylate synthase CVS42_20875 PF01479 S4 domain CVS42_20880 PF13525 Outer membrane lipoprotein CVS42_20885 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CVS42_20885 PF07992 Pyridine nucleotide-disulphide oxidoreductase CVS42_20890 PF00375 Sodium:dicarboxylate symporter family CVS42_20895 PF03313 CVS42_20895 CVS42_20900 PF08348 CVS42_20900 CVS42_20900 PF13309 CVS42_20900 CVS42_20905 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_20910 PF02233 NAD(P) transhydrogenase beta subunit CVS42_20915 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CVS42_20915 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CVS42_20915 PF12769 Domain of unknown function (DUF3814) CVS42_20920 PF00465 Iron-containing alcohol dehydrogenase CVS42_20925 PF06719 CVS42_20925 CVS42_20925 PF12833 Helix-turn-helix domain CVS42_20930 PF08212 Lipocalin-like domain CVS42_20935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_20935 PF00672 HAMP domain CVS42_20935 PF02743 Cache domain CVS42_20940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CVS42_20945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_20945 PF03466 LysR substrate binding domain CVS42_20960 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS42_20960 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS42_20965 PF01948 Aspartate carbamoyltransferase regulatory chain, allosteric domain CVS42_20965 PF02748 Aspartate carbamoyltransferase regulatory chain, metal binding domain CVS42_20970 PF01316 Arginine repressor, DNA binding domain CVS42_20970 PF02863 Arginine repressor, C-terminal domain CVS42_20975 PF03606 CVS42_20975 CVS42_20980 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CVS42_20980 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CVS42_20985 PF00696 Amino acid kinase family CVS42_20990 PF02274 Amidinotransferase CVS42_20995 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CVS42_21005 PF04055 Radical SAM superfamily CVS42_21005 PF06969 HemN C-terminal domain CVS42_21010 PF10675 CVS42_21010 CVS42_21015 PF04220 CVS42_21015 CVS42_21025 PF00034 Cytochrome c CVS42_21030 PF01926 50S ribosome-binding GTPase CVS42_21035 PF07369 Protein of unknown function (DUF1488) CVS42_21040 PF01488 Shikimate / quinate 5-dehydrogenase CVS42_21040 PF08501 Shikimate dehydrogenase substrate binding domain CVS42_21045 PF01218 Coproporphyrinogen III oxidase CVS42_21050 PF01300 Telomere recombination CVS42_21055 PF00731 AIR carboxylase CVS42_21060 PF01396 CVS42_21060 CVS42_21065 PF04361 CVS42_21065 CVS42_21070 PF02481 DNA recombination-mediator protein A CVS42_21075 PF01476 LysM domain CVS42_21080 PF01327 Polypeptide deformylase CVS42_21085 PF00551 Formyl transferase CVS42_21085 PF02911 Formyl transferase, C-terminal domain CVS42_21090 PF01029 NusB family CVS42_21090 PF01189 NOL1/NOP2/sun family CVS42_21095 PF02080 TrkA-C domain CVS42_21095 PF02254 TrkA-N domain CVS42_21100 PF02386 Cation transport protein CVS42_21105 PF00009 Elongation factor Tu GTP binding domain CVS42_21105 PF00679 Elongation factor G C-terminus CVS42_21105 PF03144 Elongation factor Tu domain 2 CVS42_21110 PF00120 Glutamine synthetase, catalytic domain CVS42_21110 PF03951 Glutamine synthetase, beta-Grasp domain CVS42_21115 PF13511 CVS42_21115 CVS42_21120 PF00512 His Kinase A (phospho-acceptor) domain CVS42_21120 PF00989 PAS fold CVS42_21120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_21125 PF00072 Response regulator receiver domain CVS42_21125 PF00158 Sigma-54 interaction domain CVS42_21125 PF02954 Bacterial regulatory protein, Fis family CVS42_21130 PF00962 Adenosine/AMP deaminase CVS42_21135 PF02646 CVS42_21135 CVS42_21145 PF12838 4Fe-4S dicluster domain CVS42_21150 PF02082 Transcriptional regulator CVS42_21155 PF00294 pfkB family carbohydrate kinase CVS42_21160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_21160 PF03466 LysR substrate binding domain CVS42_21165 PF00117 Glutamine amidotransferase class-I CVS42_21170 PF00171 Aldehyde dehydrogenase family CVS42_21175 PF00202 Aminotransferase class-III CVS42_21180 PF01381 Helix-turn-helix CVS42_21180 PF07883 Cupin domain CVS42_21185 PF00171 Aldehyde dehydrogenase family CVS42_21195 PF00892 EamA-like transporter family CVS42_21200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_21205 PF04143 CVS42_21205 CVS42_21210 PF00691 OmpA family CVS42_21210 PF01389 OmpA-like transmembrane domain CVS42_21215 PF00440 Bacterial regulatory proteins, tetR family CVS42_21220 PF04982 CVS42_21220 CVS42_21225 PF08238 Sel1 repeat CVS42_21230 PF13280 CVS42_21230 CVS42_21235 PF10117 CVS42_21235 CVS42_21240 PF07728 AAA domain (dynein-related subfamily) CVS42_21245 PF00291 Pyridoxal-phosphate dependent enzyme CVS42_21245 PF00585 C-terminal regulatory domain of Threonine dehydratase CVS42_21250 PF00920 Dehydratase family CVS42_21255 PF01063 Aminotransferase class IV CVS42_21260 PF13710 ACT domain CVS42_21265 PF00205 Thiamine pyrophosphate enzyme, central domain CVS42_21265 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CVS42_21265 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CVS42_21270 PF01078 Magnesium chelatase, subunit ChlI CVS42_21270 PF13335 CVS42_21270 CVS42_21270 PF13541 Subunit ChlI of Mg-chelatase CVS42_21275 PF01553 Acyltransferase CVS42_21280 PF01553 Acyltransferase CVS42_21285 PF04463 CVS42_21285 CVS42_21295 PF00857 Isochorismatase family CVS42_21300 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CVS42_21305 PF01323 DSBA-like thioredoxin domain CVS42_21310 PF01636 Phosphotransferase enzyme family CVS42_21315 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase CVS42_21315 PF12801 CVS42_21315 CVS42_21315 PF13746 4Fe-4S dicluster domain CVS42_21320 PF06288 Protein of unknown function (DUF1040) CVS42_21325 PF00990 GGDEF domain CVS42_21330 PF00376 MerR family regulatory protein CVS42_21330 PF09278 MerR, DNA binding CVS42_21335 PF00122 E1-E2 ATPase CVS42_21335 PF00403 Heavy-metal-associated domain CVS42_21335 PF00702 haloacid dehalogenase-like hydrolase CVS42_21340 PF00156 Phosphoribosyl transferase domain CVS42_21345 PF01138 3' exoribonuclease family, domain 1 CVS42_21345 PF03725 3' exoribonuclease family, domain 2 CVS42_21350 PF03755 CVS42_21350 CVS42_21350 PF08340 CVS42_21350 CVS42_21355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_21355 PF03466 LysR substrate binding domain CVS42_21360 PF00107 Zinc-binding dehydrogenase CVS42_21360 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_21365 PF00756 Putative esterase CVS42_21370 PF10988 Protein of unknown function (DUF2807) CVS42_21375 PF03781 Sulfatase-modifying factor enzyme 1 CVS42_21375 PF08241 Methyltransferase domain CVS42_21375 PF12867 DinB superfamily CVS42_21380 PF13593 SBF-like CPA transporter family (DUF4137) CVS42_21385 PF13520 Amino acid permease CVS42_21390 PF01588 Putative tRNA binding domain CVS42_21395 PF13520 Amino acid permease CVS42_21400 PF04074 Domain of unknown function (DUF386) CVS42_21405 PF00703 Glycosyl hydrolases family 2 CVS42_21405 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CVS42_21405 PF02837 Glycosyl hydrolases family 2, sugar binding domain CVS42_21405 PF02929 Beta galactosidase small chain CVS42_21405 PF16353 CVS42_21405 CVS42_21410 PF00356 Bacterial regulatory proteins, lacI family CVS42_21410 PF13377 Periplasmic binding protein-like domain CVS42_21450 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_21455 PF00476 DNA polymerase family A CVS42_21455 PF01367 5'-3' exonuclease, C-terminal SAM fold CVS42_21455 PF01612 3'-5' exonuclease CVS42_21455 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CVS42_21465 PF01965 DJ-1/PfpI family CVS42_21470 PF06005 Protein of unknown function (DUF904) CVS42_21480 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_21480 PF06426 Serine acetyltransferase, N-terminal CVS42_21485 PF01545 Cation efflux family CVS42_21485 PF16916 CVS42_21485 CVS42_21490 PF00072 Response regulator receiver domain CVS42_21490 PF00486 Transcriptional regulatory protein, C terminal CVS42_21495 PF00512 His Kinase A (phospho-acceptor) domain CVS42_21495 PF00672 HAMP domain CVS42_21495 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_21500 PF00588 SpoU rRNA Methylase family CVS42_21505 PF01554 MatE CVS42_21510 PF02630 SCO1/SenC CVS42_21520 PF00717 Peptidase S24-like CVS42_21520 PF01726 LexA DNA binding domain CVS42_21525 PF01553 Acyltransferase CVS42_21530 PF01040 UbiA prenyltransferase family CVS42_21535 PF04345 Chorismate lyase CVS42_21540 PF03748 CVS42_21540 CVS42_21550 PF10973 CVS42_21550 CVS42_21560 PF00107 Zinc-binding dehydrogenase CVS42_21560 PF08240 Alcohol dehydrogenase GroES-like domain CVS42_21565 PF00534 Glycosyl transferases group 1 CVS42_21565 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CVS42_21570 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CVS42_21575 PF00535 Glycosyl transferase family 2 CVS42_21580 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CVS42_21585 PF01467 Cytidylyltransferase CVS42_21590 PF04393 CVS42_21590 CVS42_21595 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CVS42_21595 PF06827 Zinc finger found in FPG and IleRS CVS42_21595 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CVS42_21605 PF00471 Ribosomal protein L33 CVS42_21610 PF00830 Ribosomal L28 family CVS42_21615 PF04002 RadC-like JAB domain CVS42_21620 PF02441 Flavoprotein CVS42_21620 PF04127 DNA / pantothenate metabolism flavoprotein CVS42_21625 PF00692 dUTPase CVS42_21630 PF00440 Bacterial regulatory proteins, tetR family CVS42_21635 PF00924 Mechanosensitive ion channel CVS42_21635 PF05552 Conserved TM helix CVS42_21640 PF00342 Phosphoglucose isomerase CVS42_21645 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CVS42_21645 PF07991 Acetohydroxy acid isomeroreductase, catalytic domain CVS42_21650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CVS42_21650 PF03466 LysR substrate binding domain CVS42_21665 PF13302 Acetyltransferase (GNAT) domain CVS42_21665 PF13380 CoA binding domain CVS42_21665 PF13549 ATP-grasp domain CVS42_21665 PF13607 Succinyl-CoA ligase like flavodoxin domain CVS42_21700 PF12724 Flavodoxin domain CVS42_21705 PF02386 Cation transport protein CVS42_21710 PF01205 Uncharacterized protein family UPF0029 CVS42_21710 PF09186 Domain of unknown function (DUF1949) CVS42_21715 PF00557 Metallopeptidase family M24 CVS42_21720 PF00501 AMP-binding enzyme CVS42_21720 PF13193 AMP-binding enzyme C-terminal domain CVS42_21720 PF16177 CVS42_21720 CVS42_21725 PF00378 Enoyl-CoA hydratase/isomerase family CVS42_21725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CVS42_21725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CVS42_21730 PF00108 Thiolase, N-terminal domain CVS42_21730 PF02803 Thiolase, C-terminal domain CVS42_21735 PF00072 Response regulator receiver domain CVS42_21735 PF00486 Transcriptional regulatory protein, C terminal CVS42_21740 PF00512 His Kinase A (phospho-acceptor) domain CVS42_21740 PF00672 HAMP domain CVS42_21740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_21745 PF01547 Bacterial extracellular solute-binding protein CVS42_21755 PF01206 Sulfurtransferase TusA CVS42_21760 PF01042 Endoribonuclease L-PSP CVS42_21765 PF00691 OmpA family CVS42_21765 PF13488 CVS42_21765 CVS42_21770 PF03352 Methyladenine glycosylase CVS42_21775 PF02091 Glycyl-tRNA synthetase alpha subunit CVS42_21780 PF02092 CVS42_21780 CVS42_21780 PF05746 DALR anticodon binding domain CVS42_21785 PF12358 CVS42_21785 CVS42_21790 PF00563 EAL domain CVS42_21795 PF03545 Yersinia virulence determinant (YopE) CVS42_21805 PF05932 Tir chaperone protein (CesT) family CVS42_21810 PF10517 CVS42_21810 CVS42_21815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CVS42_21815 PF13682 Chemoreceptor zinc-binding domain CVS42_21815 PF14827 Sensory domain of two-component sensor kinase CVS42_21820 PF03783 Curli production assembly/transport component CsgG CVS42_21825 PF16068 CVS42_21825 CVS42_21830 PF05643 Putative bacterial lipoprotein (DUF799) CVS42_21835 PF00356 Bacterial regulatory proteins, lacI family CVS42_21835 PF13377 Periplasmic binding protein-like domain CVS42_21840 PF13458 Periplasmic binding protein CVS42_21845 PF02653 CVS42_21845 CVS42_21850 PF02653 CVS42_21850 CVS42_21850 PF11862 CVS42_21850 CVS42_21855 PF00005 ABC transporter CVS42_21855 PF12399 Branched-chain amino acid ATP-binding cassette transporter CVS42_21860 PF00005 ABC transporter CVS42_21865 PF00581 Rhodanese-like domain CVS42_21870 PF01694 Rhomboid family CVS42_21870 PF12122 Protein of unknown function (DUF3582) CVS42_21875 PF12262 CVS42_21875 CVS42_21880 PF04380 CVS42_21880 CVS42_21885 PF00990 GGDEF domain CVS42_21885 PF08447 PAS fold CVS42_21890 PF00175 Oxidoreductase NAD-binding domain CVS42_21890 PF00970 Oxidoreductase FAD-binding domain CVS42_21895 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CVS42_21905 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_21905 PF07497 Rho termination factor, RNA-binding domain CVS42_21905 PF07498 Rho termination factor, N-terminal domain CVS42_21910 PF00085 Thioredoxin CVS42_21915 PF00270 DEAD/DEAH box helicase CVS42_21915 PF00271 Helicase conserved C-terminal domain CVS42_21920 PF02541 Ppx/GppA phosphatase family CVS42_21925 PF07073 Modulator of Rho-dependent transcription termination (ROF) CVS42_21930 PF04445 Putative SAM-dependent methyltransferase CVS42_21935 PF00497 Bacterial extracellular solute-binding proteins, family 3 CVS42_21940 PF00563 EAL domain CVS42_21940 PF00990 GGDEF domain CVS42_21940 PF08447 PAS fold CVS42_21940 PF13426 PAS domain CVS42_21945 PF01432 Peptidase family M3 CVS42_21950 PF00704 Glycosyl hydrolases family 18 CVS42_21950 PF16403 CVS42_21950 CVS42_21955 PF12561 CVS42_21955 CVS42_21960 PF00490 Delta-aminolevulinic acid dehydratase CVS42_21965 PF01026 TatD related DNase CVS42_21970 PF00902 Sec-independent protein translocase protein (TatC) CVS42_21975 PF02416 mttA/Hcf106 family CVS42_21980 PF02416 mttA/Hcf106 family CVS42_21985 PF03109 CVS42_21985 CVS42_21990 PF02036 SCP-2 sterol transfer family CVS42_21995 PF01209 ubiE/COQ5 methyltransferase family CVS42_22000 PF02537 CVS42_22000 CVS42_22005 PF07969 Amidohydrolase family CVS42_22010 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CVS42_22045 PF03544 Gram-negative bacterial TonB protein C-terminal CVS42_22050 PF02472 Biopolymer transport protein ExbD/TolR CVS42_22055 PF01618 CVS42_22055 CVS42_22060 PF01618 CVS42_22060 CVS42_22065 PF11932 CVS42_22065 CVS42_22070 PF00196 Bacterial regulatory proteins, luxR family CVS42_22070 PF03472 Autoinducer binding domain CVS42_22075 PF01380 SIS domain CVS42_22075 PF13522 Glutamine amidotransferase domain CVS42_22080 PF00455 CVS42_22080 CVS42_22080 PF08220 DeoR-like helix-turn-helix domain CVS42_22085 PF00072 Response regulator receiver domain CVS42_22085 PF00486 Transcriptional regulatory protein, C terminal CVS42_22090 PF00512 His Kinase A (phospho-acceptor) domain CVS42_22090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CVS42_22095 PF00905 Penicillin binding protein transpeptidase domain CVS42_22100 PF07603 CVS42_22100 CVS42_22105 PF06123 CVS42_22105 CVS42_22110 PF00132 Bacterial transferase hexapeptide (six repeats) CVS42_22110 PF12804 MobA-like NTP transferase domain CVS42_22115 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CVS42_22115 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CVS42_22120 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_22120 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVS42_22125 PF00231 ATP synthase CVS42_22130 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CVS42_22130 PF00306 ATP synthase alpha/beta chain, C terminal domain CVS42_22130 PF02874 ATP synthase alpha/beta family, beta-barrel domain CVS42_22135 PF00213 ATP synthase delta (OSCP) subunit CVS42_22140 PF00430 ATP synthase B/B' CF(0) CVS42_22145 PF00137 ATP synthase subunit C CVS42_22150 PF00119 ATP synthase A chain CVS42_22155 PF03899 CVS42_22155 CVS42_22160 PF02195 ParB-like nuclease domain CVS42_22165 PF13614 AAA domain CVS42_22170 PF02527 rRNA small subunit methyltransferase G CVS42_22175 PF01134 Glucose inhibited division protein A CVS42_22175 PF13932 GidA associated domain 3 CVS42_22180 PF00258 Flavodoxin CVS42_22185 PF00593 TonB dependent receptor CVS42_22185 PF07715 TonB-dependent Receptor Plug Domain CVS42_22190 PF00005 ABC transporter CVS42_22195 PF00005 ABC transporter CVS42_22200 PF01497 Periplasmic binding protein CVS42_22205 PF01032 FecCD transport family