CVS42_00020 SM01234 CVS42_00020 CVS42_00035 SM00382 ATPases associated with a variety of cellular activities CVS42_00045 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_00045 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS42_00050 SM00382 ATPases associated with a variety of cellular activities CVS42_00050 SM00760 Bacterial dnaA protein helix-turn-helix domain CVS42_00055 SM00480 DNA polymerase III beta subunit CVS42_00065 SM00387 Histidine kinase-like ATPases CVS42_00065 SM00433 TopoisomeraseII CVS42_00080 SM00342 helix_turn_helix, arabinose operon control protein CVS42_00110 SM00342 helix_turn_helix, arabinose operon control protein CVS42_00120 SM00448 cheY-homologous receiver domain CVS42_00120 SM00862 Transcriptional regulatory protein, C terminal CVS42_00125 SM00387 Histidine kinase-like ATPases CVS42_00125 SM00388 His Kinase A (phosphoacceptor) domain CVS42_00155 SM00091 PAS domain CVS42_00155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_00155 SM00387 Histidine kinase-like ATPases CVS42_00195 SM00458 Ricin-type beta-trefoil CVS42_00215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_00215 SM00387 Histidine kinase-like ATPases CVS42_00215 SM00388 His Kinase A (phosphoacceptor) domain CVS42_00220 SM00448 cheY-homologous receiver domain CVS42_00250 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_00250 SM00954 Region found in RelA / SpoT proteins CVS42_00255 SM01409 CVS42_00255 CVS42_00260 SM00072 Guanylate kinase homologues. CVS42_00280 SM00267 diguanylate cyclase CVS42_00335 SM00387 Histidine kinase-like ATPases CVS42_00340 SM00448 cheY-homologous receiver domain CVS42_00340 SM00850 LytTr DNA-binding domain CVS42_00355 SM01001 AIR carboxylase CVS42_00385 SM00360 RNA recognition motif CVS42_00430 SM00052 Putative diguanylate phosphodiesterase CVS42_00430 SM00267 diguanylate cyclase CVS42_00440 SM00829 Enoylreductase CVS42_00500 SM00342 helix_turn_helix, arabinose operon control protein CVS42_00560 SM01321 CVS42_00560 CVS42_00575 SM00382 ATPases associated with a variety of cellular activities CVS42_00605 SM00924 MgtE intracellular N domain CVS42_00630 SM00382 ATPases associated with a variety of cellular activities CVS42_00630 SM01086 C-terminal, D2-small domain, of ClpB protein CVS42_00650 SM00836 DALR anticodon binding domain CVS42_00650 SM01016 Arginyl tRNA synthetase N terminal dom CVS42_00655 SM00464 Found in ATP-dependent protease La (LON) CVS42_00695 SM00354 helix_turn _helix lactose operon repressor CVS42_00700 SM01038 Beta galactosidase small chain CVS42_00710 SM00382 ATPases associated with a variety of cellular activities CVS42_00720 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_00720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_00740 SM00642 Alpha-amylase domain CVS42_00785 SM01230 CVS42_00785 CVS42_00805 SM00382 ATPases associated with a variety of cellular activities CVS42_00840 SM00341 Helicase and RNase D C-terminal CVS42_00840 SM00487 DEAD-like helicases superfamily CVS42_00840 SM00490 helicase superfamily c-terminal domain CVS42_00840 SM00956 CVS42_00840 CVS42_00870 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_00870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_00870 SM01358 CVS42_00870 CVS42_00890 SM00487 DEAD-like helicases superfamily CVS42_00890 SM00490 helicase superfamily c-terminal domain CVS42_00910 SM00919 Malic enzyme, NAD binding domain CVS42_00910 SM01274 CVS42_00910 CVS42_00940 SM00487 DEAD-like helicases superfamily CVS42_00940 SM00490 helicase superfamily c-terminal domain CVS42_00945 SM00155 Phospholipase D. Active site motifs. CVS42_00970 SM00342 helix_turn_helix, arabinose operon control protein CVS42_00980 SM00354 helix_turn _helix lactose operon repressor CVS42_01000 SM00450 Rhodanese Homology Domain CVS42_01045 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_01045 SM00732 Likely ribonuclease with RNase H fold. CVS42_01055 SM00448 cheY-homologous receiver domain CVS42_01055 SM00862 Transcriptional regulatory protein, C terminal CVS42_01060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_01060 SM00387 Histidine kinase-like ATPases CVS42_01060 SM00388 His Kinase A (phosphoacceptor) domain CVS42_01070 SM01403 CVS42_01070 CVS42_01090 SM01382 CVS42_01090 CVS42_01090 SM01383 CVS42_01090 CVS42_01105 SM00322 K homology RNA-binding domain CVS42_01125 SM01374 CVS42_01125 CVS42_01195 SM00363 S4 RNA-binding domain CVS42_01195 SM01390 CVS42_01195 CVS42_01200 SM00662 RNA polymerases D CVS42_01245 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_01245 SM00267 diguanylate cyclase CVS42_01250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_01250 SM00387 Histidine kinase-like ATPases CVS42_01250 SM00388 His Kinase A (phosphoacceptor) domain CVS42_01255 SM00448 cheY-homologous receiver domain CVS42_01255 SM00862 Transcriptional regulatory protein, C terminal CVS42_01310 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_01310 SM00091 PAS domain CVS42_01310 SM00267 diguanylate cyclase CVS42_01320 SM00530 Helix-turn-helix XRE-family like proteins CVS42_01325 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_01325 SM00866 CVS42_01325 CVS42_01350 SM00382 ATPases associated with a variety of cellular activities CVS42_01360 SM00267 diguanylate cyclase CVS42_01425 SM00421 helix_turn_helix, Lux Regulon CVS42_01430 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_01445 SM01060 CVS42_01445 CVS42_01455 SM00342 helix_turn_helix, arabinose operon control protein CVS42_01455 SM00871 Bacterial transcription activator, effector binding domain CVS42_01660 SM00530 Helix-turn-helix XRE-family like proteins CVS42_01690 SM00530 Helix-turn-helix XRE-family like proteins CVS42_01730 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS42_01730 SM00267 diguanylate cyclase CVS42_01735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_01735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_01750 SM00052 Putative diguanylate phosphodiesterase CVS42_01760 SM00833 Cobalamin synthesis protein cobW C-terminal domain CVS42_01795 SM00905 Dihydroneopterin aldolase CVS42_01800 SM01207 CVS42_01800 CVS42_01855 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS42_01905 SM00852 Probable molybdopterin binding domain CVS42_01925 SM00344 helix_turn_helix ASNC type CVS42_01945 SM00642 Alpha-amylase domain CVS42_01985 SM00851 MGS-like domain CVS42_02020 SM00260 Two component signalling adaptor domain CVS42_02020 SM00448 cheY-homologous receiver domain CVS42_02050 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CVS42_02095 SM00487 DEAD-like helicases superfamily CVS42_02095 SM00490 helicase superfamily c-terminal domain CVS42_02130 SM00271 DnaJ molecular chaperone homology domain CVS42_02185 SM00387 Histidine kinase-like ATPases CVS42_02185 SM00433 TopoisomeraseII CVS42_02190 SM00434 DNA Topoisomerase IV CVS42_02230 SM00271 DnaJ molecular chaperone homology domain CVS42_02270 SM00563 Phosphate acyltransferases CVS42_02290 SM00465 GIY-YIG type nucleases (URI domain) CVS42_02305 SM00986 Uracil DNA glycosylase superfamily CVS42_02305 SM00987 UreE urease accessory protein, C-terminal domain CVS42_02325 SM00382 ATPases associated with a variety of cellular activities CVS42_02365 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS42_02380 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_02385 SM00478 endonuclease III CVS42_02385 SM00525 CVS42_02385 CVS42_02415 SM00267 diguanylate cyclase CVS42_02420 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_02420 SM00357 Cold shock protein domain CVS42_02420 SM00955 CVS42_02420 CVS42_02475 SM00382 ATPases associated with a variety of cellular activities CVS42_02475 SM01086 C-terminal, D2-small domain, of ClpB protein CVS42_02480 SM00382 ATPases associated with a variety of cellular activities CVS42_02530 SM00671 Sel1-like repeats. CVS42_02565 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_02590 SM00967 RNA 2'-O ribose methyltransferase substrate binding CVS42_02605 SM00487 DEAD-like helicases superfamily CVS42_02605 SM00490 helicase superfamily c-terminal domain CVS42_02675 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_02720 SM00822 CVS42_02720 CVS42_02765 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS42_02765 SM00267 diguanylate cyclase CVS42_02770 SM00357 Cold shock protein domain CVS42_02770 SM00955 CVS42_02770 CVS42_02785 SM00421 helix_turn_helix, Lux Regulon CVS42_02795 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_02795 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_02800 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS42_02805 SM00382 ATPases associated with a variety of cellular activities CVS42_02935 SM00344 helix_turn_helix ASNC type CVS42_02965 SM00642 Alpha-amylase domain CVS42_02970 SM00642 Alpha-amylase domain CVS42_02985 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_03000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_03000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_03010 SM00244 prohibitin homologues CVS42_03050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_03070 SM00382 ATPases associated with a variety of cellular activities CVS42_03105 SM00448 cheY-homologous receiver domain CVS42_03105 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_03135 SM00487 DEAD-like helicases superfamily CVS42_03135 SM00490 helicase superfamily c-terminal domain CVS42_03135 SM00847 Helicase associated domain (HA2) Add an annotation CVS42_03190 SM00450 Rhodanese Homology Domain CVS42_03215 SM00382 ATPases associated with a variety of cellular activities CVS42_03240 SM00014 Acid phosphatase homologues CVS42_03265 SM00644 CVS42_03265 CVS42_03275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_03275 SM00387 Histidine kinase-like ATPases CVS42_03275 SM00388 His Kinase A (phosphoacceptor) domain CVS42_03275 SM00448 cheY-homologous receiver domain CVS42_03285 SM00954 Region found in RelA / SpoT proteins CVS42_03300 SM01192 CVS42_03300 CVS42_03300 SM01193 CVS42_03300 CVS42_03345 SM01126 CVS42_03345 CVS42_03360 SM00382 ATPases associated with a variety of cellular activities CVS42_03365 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_03380 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_03470 SM00257 Lysin motif CVS42_03530 SM00849 Metallo-beta-lactamase superfamily CVS42_03540 SM00487 DEAD-like helicases superfamily CVS42_03540 SM00490 helicase superfamily c-terminal domain CVS42_03545 SM00267 diguanylate cyclase CVS42_03615 SM00387 Histidine kinase-like ATPases CVS42_03620 SM00448 cheY-homologous receiver domain CVS42_03620 SM00862 Transcriptional regulatory protein, C terminal CVS42_03645 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_03645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_03655 SM00287 Bacterial SH3 domain homologues CVS42_03680 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_03790 SM00358 Double-stranded RNA binding motif CVS42_03790 SM00535 Ribonuclease III family CVS42_03845 SM00237 Domains in Na-Ca exchangers and integrin-beta4 CVS42_03855 SM00052 Putative diguanylate phosphodiesterase CVS42_03855 SM00091 PAS domain CVS42_03855 SM00267 diguanylate cyclase CVS42_03895 SM01057 Eukaryotic-type carbonic anhydrase CVS42_03940 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_03940 SM00419 helix_turn_helix, cAMP Regulatory protein CVS42_03970 SM00267 diguanylate cyclase CVS42_03980 SM00260 Two component signalling adaptor domain CVS42_03980 SM00448 cheY-homologous receiver domain CVS42_04005 SM00320 WD40 repeats CVS42_04015 SM00382 ATPases associated with a variety of cellular activities CVS42_04015 SM00448 cheY-homologous receiver domain CVS42_04040 SM00978 CVS42_04040 CVS42_04050 SM00382 ATPases associated with a variety of cellular activities CVS42_04055 SM01005 Alanine racemase, C-terminal domain CVS42_04075 SM00382 ATPases associated with a variety of cellular activities CVS42_04120 SM00421 helix_turn_helix, Lux Regulon CVS42_04155 SM00530 Helix-turn-helix XRE-family like proteins CVS42_04165 SM00387 Histidine kinase-like ATPases CVS42_04165 SM00388 His Kinase A (phosphoacceptor) domain CVS42_04165 SM00448 cheY-homologous receiver domain CVS42_04170 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CVS42_04170 SM00495 Chitin-binding domain type 3 CVS42_04170 SM00636 CVS42_04170 CVS42_04175 SM00267 diguanylate cyclase CVS42_04180 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins CVS42_04180 SM00495 Chitin-binding domain type 3 CVS42_04180 SM00636 CVS42_04180 CVS42_04185 SM00495 Chitin-binding domain type 3 CVS42_04190 SM00495 Chitin-binding domain type 3 CVS42_04230 SM00495 Chitin-binding domain type 3 CVS42_04230 SM00636 CVS42_04230 CVS42_04235 SM00260 Two component signalling adaptor domain CVS42_04235 SM00448 cheY-homologous receiver domain CVS42_04245 SM00382 ATPases associated with a variety of cellular activities CVS42_04260 SM00052 Putative diguanylate phosphodiesterase CVS42_04285 SM00450 Rhodanese Homology Domain CVS42_04300 SM00852 Probable molybdopterin binding domain CVS42_04350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_04350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_04360 SM00870 CVS42_04360 CVS42_04370 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CVS42_04385 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_04400 SM00936 Penicillin-binding protein 5, C-terminal domain CVS42_04480 SM00267 diguanylate cyclase CVS42_04500 SM00422 helix_turn_helix, mercury resistance CVS42_04510 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_04510 SM01091 Transporter associated domain CVS42_04525 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_04540 SM00357 Cold shock protein domain CVS42_04545 SM00267 diguanylate cyclase CVS42_04555 SM00267 diguanylate cyclase CVS42_04575 SM00841 Elongation factor P, C-terminal CVS42_04575 SM01185 CVS42_04575 CVS42_04585 SM01240 CVS42_04585 CVS42_04595 SM00387 Histidine kinase-like ATPases CVS42_04595 SM00388 His Kinase A (phosphoacceptor) domain CVS42_04600 SM00448 cheY-homologous receiver domain CVS42_04600 SM00862 Transcriptional regulatory protein, C terminal CVS42_04610 SM00822 CVS42_04610 CVS42_04615 SM01236 CVS42_04615 CVS42_04695 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_04695 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_04730 SM00849 Metallo-beta-lactamase superfamily CVS42_04740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_04740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_04755 SM00842 Cell division protein FtsA CVS42_04775 SM00965 Secretin and TonB N terminus short domain CVS42_04840 SM01150 CVS42_04840 CVS42_04860 SM00890 Domain of unknown function CVS42_04865 SM00642 Alpha-amylase domain CVS42_04895 SM01022 CVS42_04895 CVS42_04900 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_04975 SM01400 CVS42_04975 CVS42_05000 SM00937 CVS42_05000 CVS42_05035 SM00986 Uracil DNA glycosylase superfamily CVS42_05035 SM00987 UreE urease accessory protein, C-terminal domain CVS42_05045 SM00342 helix_turn_helix, arabinose operon control protein CVS42_05055 SM00788 Adenylosuccinate synthetase CVS42_05085 SM00822 CVS42_05085 CVS42_05150 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CVS42_05150 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CVS42_05150 SM00493 CVS42_05150 CVS42_05160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_05180 SM00382 ATPases associated with a variety of cellular activities CVS42_05185 SM00382 ATPases associated with a variety of cellular activities CVS42_05205 SM00091 PAS domain CVS42_05205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_05205 SM00387 Histidine kinase-like ATPases CVS42_05205 SM00388 His Kinase A (phosphoacceptor) domain CVS42_05205 SM00448 cheY-homologous receiver domain CVS42_05260 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_05260 SM00091 PAS domain CVS42_05260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_05270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_05280 SM00852 Probable molybdopterin binding domain CVS42_05290 SM00382 ATPases associated with a variety of cellular activities CVS42_05305 SM00382 ATPases associated with a variety of cellular activities CVS42_05305 SM00448 cheY-homologous receiver domain CVS42_05310 SM00387 Histidine kinase-like ATPases CVS42_05310 SM00388 His Kinase A (phosphoacceptor) domain CVS42_05355 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS42_05380 SM00919 Malic enzyme, NAD binding domain CVS42_05380 SM01274 CVS42_05380 CVS42_05400 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_05405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_05405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_05410 SM00862 Transcriptional regulatory protein, C terminal CVS42_05455 SM00342 helix_turn_helix, arabinose operon control protein CVS42_05455 SM00871 Bacterial transcription activator, effector binding domain CVS42_05480 SM00382 ATPases associated with a variety of cellular activities CVS42_05540 SM00382 ATPases associated with a variety of cellular activities CVS42_05540 SM00962 SRP54-type protein, GTPase domain CVS42_05555 SM00448 cheY-homologous receiver domain CVS42_05565 SM00073 Histidine Phosphotransfer domain CVS42_05565 SM00260 Two component signalling adaptor domain CVS42_05565 SM00387 Histidine kinase-like ATPases CVS42_05565 SM01231 CVS42_05565 CVS42_05570 SM00448 cheY-homologous receiver domain CVS42_05590 SM00260 Two component signalling adaptor domain CVS42_05595 SM00260 Two component signalling adaptor domain CVS42_05605 SM00382 ATPases associated with a variety of cellular activities CVS42_05665 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. CVS42_05730 SM00354 helix_turn _helix lactose operon repressor CVS42_05800 SM00382 ATPases associated with a variety of cellular activities CVS42_05880 SM00342 helix_turn_helix, arabinose operon control protein CVS42_05970 SM00481 DNA polymerase alpha chain like domain CVS42_05990 SM00382 ATPases associated with a variety of cellular activities CVS42_06075 SM00530 Helix-turn-helix XRE-family like proteins CVS42_06145 SM00528 Domain in histone-like proteins of HNS family CVS42_06175 SM00052 Putative diguanylate phosphodiesterase CVS42_06190 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_06190 SM00387 Histidine kinase-like ATPases CVS42_06190 SM00388 His Kinase A (phosphoacceptor) domain CVS42_06190 SM00448 cheY-homologous receiver domain CVS42_06205 SM00448 cheY-homologous receiver domain CVS42_06210 SM00421 helix_turn_helix, Lux Regulon CVS42_06210 SM00448 cheY-homologous receiver domain CVS42_06250 SM00635 Bacterial Ig-like domain 2 CVS42_06260 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_06265 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_06265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06295 SM00052 Putative diguanylate phosphodiesterase CVS42_06295 SM00448 cheY-homologous receiver domain CVS42_06300 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_06300 SM00073 Histidine Phosphotransfer domain CVS42_06300 SM00387 Histidine kinase-like ATPases CVS42_06300 SM00388 His Kinase A (phosphoacceptor) domain CVS42_06300 SM00448 cheY-homologous receiver domain CVS42_06355 SM00897 FIST N domain CVS42_06355 SM01204 CVS42_06355 CVS42_06360 SM00387 Histidine kinase-like ATPases CVS42_06360 SM00388 His Kinase A (phosphoacceptor) domain CVS42_06360 SM00448 cheY-homologous receiver domain CVS42_06365 SM00464 Found in ATP-dependent protease La (LON) CVS42_06370 SM00421 helix_turn_helix, Lux Regulon CVS42_06370 SM00448 cheY-homologous receiver domain CVS42_06375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06375 SM00387 Histidine kinase-like ATPases CVS42_06380 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_06395 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS42_06420 SM00852 Probable molybdopterin binding domain CVS42_06450 SM00382 ATPases associated with a variety of cellular activities CVS42_06475 SM00852 Probable molybdopterin binding domain CVS42_06485 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_06485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06490 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_06490 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06510 SM00867 YceI-like domain CVS42_06520 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain CVS42_06530 SM00563 Phosphate acyltransferases CVS42_06555 SM00849 Metallo-beta-lactamase superfamily CVS42_06570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_06570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06595 SM00855 Phosphoglycerate mutase family CVS42_06640 SM00155 Phospholipase D. Active site motifs. CVS42_06720 SM00448 cheY-homologous receiver domain CVS42_06720 SM00862 Transcriptional regulatory protein, C terminal CVS42_06725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_06725 SM00387 Histidine kinase-like ATPases CVS42_06725 SM00388 His Kinase A (phosphoacceptor) domain CVS42_06730 SM00487 DEAD-like helicases superfamily CVS42_06730 SM00490 helicase superfamily c-terminal domain CVS42_06750 SM00257 Lysin motif CVS42_06755 SM00849 Metallo-beta-lactamase superfamily CVS42_06770 SM00479 CVS42_06770 CVS42_06780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_06805 SM00382 ATPases associated with a variety of cellular activities CVS42_06860 SM00028 Tetratricopeptide repeats CVS42_06860 SM00448 cheY-homologous receiver domain CVS42_06890 SM00267 diguanylate cyclase CVS42_06985 SM00477 DNA/RNA non-specific endonuclease CVS42_06985 SM00892 DNA/RNA non-specific endonuclease CVS42_06995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_06995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_07005 SM00342 helix_turn_helix, arabinose operon control protein CVS42_07010 SM01329 CVS42_07010 CVS42_07160 SM01126 CVS42_07160 CVS42_07240 SM00091 PAS domain CVS42_07240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_07250 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS42_07320 SM00382 ATPases associated with a variety of cellular activities CVS42_07380 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_07380 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS42_07395 SM00382 ATPases associated with a variety of cellular activities CVS42_07400 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_07400 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS42_07490 SM00829 Enoylreductase CVS42_07500 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_07500 SM01091 Transporter associated domain CVS42_07525 SM00487 DEAD-like helicases superfamily CVS42_07525 SM00490 helicase superfamily c-terminal domain CVS42_07535 SM00327 von Willebrand factor (vWF) type A domain CVS42_07560 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_07575 SM01323 CVS42_07575 CVS42_07590 SM00450 Rhodanese Homology Domain CVS42_07595 SM00028 Tetratricopeptide repeats CVS42_07645 SM00271 DnaJ molecular chaperone homology domain CVS42_07670 SM00562 CVS42_07670 CVS42_07680 SM00028 Tetratricopeptide repeats CVS42_07685 SM00530 Helix-turn-helix XRE-family like proteins CVS42_07705 SM00564 beta-propeller repeat CVS42_07725 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_07730 SM01211 CVS42_07730 CVS42_07740 SM00479 CVS42_07740 CVS42_07745 SM00014 Acid phosphatase homologues CVS42_07755 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS42_07880 SM00382 ATPases associated with a variety of cellular activities CVS42_07990 SM00671 Sel1-like repeats. CVS42_08175 SM00857 Resolvase, N terminal domain CVS42_08200 SM00528 Domain in histone-like proteins of HNS family CVS42_08210 SM00342 helix_turn_helix, arabinose operon control protein CVS42_08225 SM00849 Metallo-beta-lactamase superfamily CVS42_08285 SM00493 CVS42_08285 CVS42_08290 SM00387 Histidine kinase-like ATPases CVS42_08295 SM00382 ATPases associated with a variety of cellular activities CVS42_08300 SM00382 ATPases associated with a variety of cellular activities CVS42_08320 SM00382 ATPases associated with a variety of cellular activities CVS42_08365 SM00091 PAS domain CVS42_08365 SM00382 ATPases associated with a variety of cellular activities CVS42_08375 SM00267 diguanylate cyclase CVS42_08465 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_08525 SM00387 Histidine kinase-like ATPases CVS42_08525 SM00388 His Kinase A (phosphoacceptor) domain CVS42_08525 SM00448 cheY-homologous receiver domain CVS42_08530 SM00382 ATPases associated with a variety of cellular activities CVS42_08535 SM00382 ATPases associated with a variety of cellular activities CVS42_08620 SM00861 Transketolase, pyrimidine binding domain CVS42_08635 SM00881 CoA binding domain CVS42_08650 SM00382 ATPases associated with a variety of cellular activities CVS42_08660 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_08660 SM00866 CVS42_08660 CVS42_08750 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_08750 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_08750 SM01049 CVS42_08750 CVS42_08760 SM01144 CVS42_08760 CVS42_08780 SM00342 helix_turn_helix, arabinose operon control protein CVS42_08795 SM00642 Alpha-amylase domain CVS42_08830 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_08855 SM00382 ATPases associated with a variety of cellular activities CVS42_08865 SM00518 AP endonuclease family 2 CVS42_08890 SM00090 RIO-like kinase CVS42_08900 SM00267 diguanylate cyclase CVS42_08910 SM00486 DNA polymerase type-B family CVS42_08960 SM00825 Beta-ketoacyl synthase CVS42_08975 SM00487 DEAD-like helicases superfamily CVS42_08975 SM00490 helicase superfamily c-terminal domain CVS42_09000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_09010 SM01322 CVS42_09010 CVS42_09025 SM00382 ATPases associated with a variety of cellular activities CVS42_09110 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS42_09330 SM01092 CO dehydrogenase flavoprotein C-terminal domain CVS42_09335 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS42_09355 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CVS42_09360 SM01092 CO dehydrogenase flavoprotein C-terminal domain CVS42_09385 SM00091 PAS domain CVS42_09385 SM00267 diguanylate cyclase CVS42_09440 SM00491 CVS42_09440 CVS42_09465 SM00341 Helicase and RNase D C-terminal CVS42_09465 SM00474 3'-5' exonuclease CVS42_09475 SM00849 Metallo-beta-lactamase superfamily CVS42_09480 SM00450 Rhodanese Homology Domain CVS42_09515 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CVS42_09520 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_09520 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_09530 SM00880 CVS42_09530 CVS42_09565 SM00925 MltA specific insert domain CVS42_09595 SM00434 DNA Topoisomerase IV CVS42_09600 SM00642 Alpha-amylase domain CVS42_09605 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_09610 SM00671 Sel1-like repeats. CVS42_09615 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CVS42_09640 SM00873 B3/4 domain CVS42_09640 SM00874 tRNA synthetase B5 domain CVS42_09640 SM00896 Ferredoxin-fold anticodon binding domain CVS42_09645 SM00411 bacterial (prokaryotic) histone like domain CVS42_09650 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_09650 SM00387 Histidine kinase-like ATPases CVS42_09650 SM00388 His Kinase A (phosphoacceptor) domain CVS42_09650 SM00448 cheY-homologous receiver domain CVS42_09675 SM00267 diguanylate cyclase CVS42_09680 SM00354 helix_turn _helix lactose operon repressor CVS42_09700 SM00382 ATPases associated with a variety of cellular activities CVS42_09720 SM00953 CVS42_09720 CVS42_09745 SM00382 ATPases associated with a variety of cellular activities CVS42_09770 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_09770 SM00419 helix_turn_helix, cAMP Regulatory protein CVS42_09825 SM00945 ProQ/FINO family CVS42_09830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS42_09830 SM00245 tail specific protease CVS42_09875 SM00981 CVS42_09875 CVS42_09885 SM00382 ATPases associated with a variety of cellular activities CVS42_09995 SM00822 CVS42_09995 CVS42_10085 SM00382 ATPases associated with a variety of cellular activities CVS42_10105 SM00825 Beta-ketoacyl synthase CVS42_10115 SM00822 CVS42_10115 CVS42_10120 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CVS42_10155 SM00363 S4 RNA-binding domain CVS42_10160 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_10185 SM00354 helix_turn _helix lactose operon repressor CVS42_10215 SM00487 DEAD-like helicases superfamily CVS42_10215 SM00490 helicase superfamily c-terminal domain CVS42_10235 SM00463 Small MutS-related domain CVS42_10240 SM00091 PAS domain CVS42_10240 SM00267 diguanylate cyclase CVS42_10245 SM00855 Phosphoglycerate mutase family CVS42_10255 SM00495 Chitin-binding domain type 3 CVS42_10270 SM00782 PhnA Zinc-Ribbon CVS42_10305 SM00487 DEAD-like helicases superfamily CVS42_10305 SM00490 helicase superfamily c-terminal domain CVS42_10310 SM00763 PrkA AAA domain CVS42_10350 SM00327 von Willebrand factor (vWF) type A domain CVS42_10355 SM00028 Tetratricopeptide repeats CVS42_10385 SM00052 Putative diguanylate phosphodiesterase CVS42_10395 SM00422 helix_turn_helix, mercury resistance CVS42_10410 SM00382 ATPases associated with a variety of cellular activities CVS42_10410 SM00487 DEAD-like helicases superfamily CVS42_10410 SM00490 helicase superfamily c-terminal domain CVS42_10410 SM00847 Helicase associated domain (HA2) Add an annotation CVS42_10415 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_10420 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_10445 SM00327 von Willebrand factor (vWF) type A domain CVS42_10450 SM00327 von Willebrand factor (vWF) type A domain CVS42_10530 SM00859 Semialdehyde dehydrogenase, NAD binding domain CVS42_10540 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS42_10540 SM00382 ATPases associated with a variety of cellular activities CVS42_10565 SM00954 Region found in RelA / SpoT proteins CVS42_10665 SM00382 ATPases associated with a variety of cellular activities CVS42_10670 SM00382 ATPases associated with a variety of cellular activities CVS42_10720 SM00267 diguanylate cyclase CVS42_10815 SM00331 Sigma factor PP2C-like phosphatases CVS42_10815 SM00448 cheY-homologous receiver domain CVS42_10845 SM00387 Histidine kinase-like ATPases CVS42_10845 SM00388 His Kinase A (phosphoacceptor) domain CVS42_10845 SM00448 cheY-homologous receiver domain CVS42_10875 SM00822 CVS42_10875 CVS42_10915 SM00878 Biotin carboxylase C-terminal domain CVS42_10915 SM01209 CVS42_10915 CVS42_10925 SM00422 helix_turn_helix, mercury resistance CVS42_10930 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_10995 SM00530 Helix-turn-helix XRE-family like proteins CVS42_11005 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_11005 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_11010 SM00479 CVS42_11010 CVS42_11115 SM00528 Domain in histone-like proteins of HNS family CVS42_11330 SM00530 Helix-turn-helix XRE-family like proteins CVS42_11345 SM00530 Helix-turn-helix XRE-family like proteins CVS42_11390 SM00382 ATPases associated with a variety of cellular activities CVS42_11400 SM00411 bacterial (prokaryotic) histone like domain CVS42_11405 SM00382 ATPases associated with a variety of cellular activities CVS42_11405 SM00464 Found in ATP-dependent protease La (LON) CVS42_11410 SM00382 ATPases associated with a variety of cellular activities CVS42_11410 SM00994 ClpX C4-type zinc finger CVS42_11410 SM01086 C-terminal, D2-small domain, of ClpB protein CVS42_11435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_11445 SM00382 ATPases associated with a variety of cellular activities CVS42_11460 SM00487 DEAD-like helicases superfamily CVS42_11460 SM00490 helicase superfamily c-terminal domain CVS42_11460 SM00982 CVS42_11460 CVS42_11460 SM01058 CarD-like/TRCF domain CVS42_11485 SM00855 Phosphoglycerate mutase family CVS42_11500 SM00364 Leucine-rich repeats, bacterial type CVS42_11500 SM00369 Leucine-rich repeats, typical (most populated) subfamily CVS42_11530 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_11530 SM01240 CVS42_11530 CVS42_11555 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. CVS42_11565 SM00487 DEAD-like helicases superfamily CVS42_11565 SM00490 helicase superfamily c-terminal domain CVS42_11570 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_11575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_11575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_11595 SM00893 Electron transfer flavoprotein domain CVS42_11600 SM00893 Electron transfer flavoprotein domain CVS42_11640 SM00052 Putative diguanylate phosphodiesterase CVS42_11640 SM00267 diguanylate cyclase CVS42_11695 SM00382 ATPases associated with a variety of cellular activities CVS42_11705 SM00843 CVS42_11705 CVS42_11710 SM00344 helix_turn_helix ASNC type CVS42_11715 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CVS42_11715 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CVS42_11725 SM00267 diguanylate cyclase CVS42_11725 SM00448 cheY-homologous receiver domain CVS42_11745 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_11750 SM00382 ATPases associated with a variety of cellular activities CVS42_11750 SM01086 C-terminal, D2-small domain, of ClpB protein CVS42_11760 SM00357 Cold shock protein domain CVS42_11785 SM00448 cheY-homologous receiver domain CVS42_11785 SM00862 Transcriptional regulatory protein, C terminal CVS42_11790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_11790 SM00387 Histidine kinase-like ATPases CVS42_11790 SM00388 His Kinase A (phosphoacceptor) domain CVS42_11815 SM00671 Sel1-like repeats. CVS42_11835 SM01154 CVS42_11835 CVS42_11850 SM00528 Domain in histone-like proteins of HNS family CVS42_11875 SM01144 CVS42_11875 CVS42_11885 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CVS42_11890 SM00028 Tetratricopeptide repeats CVS42_11900 SM00411 bacterial (prokaryotic) histone like domain CVS42_11905 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_11955 SM00052 Putative diguanylate phosphodiesterase CVS42_11955 SM00267 diguanylate cyclase CVS42_11965 SM00448 cheY-homologous receiver domain CVS42_11970 SM00091 PAS domain CVS42_11995 SM00360 RNA recognition motif CVS42_12005 SM00382 ATPases associated with a variety of cellular activities CVS42_12015 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_12015 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS42_12125 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region CVS42_12130 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CVS42_12130 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CVS42_12170 SM00897 FIST N domain CVS42_12170 SM01204 CVS42_12170 CVS42_12175 SM00091 PAS domain CVS42_12175 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_12180 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_12185 SM00052 Putative diguanylate phosphodiesterase CVS42_12185 SM00267 diguanylate cyclase CVS42_12205 SM00052 Putative diguanylate phosphodiesterase CVS42_12205 SM00267 diguanylate cyclase CVS42_12225 SM00382 ATPases associated with a variety of cellular activities CVS42_12230 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_12255 SM00487 DEAD-like helicases superfamily CVS42_12255 SM00490 helicase superfamily c-terminal domain CVS42_12275 SM00899 CVS42_12275 CVS42_12305 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_12315 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_12325 SM00487 DEAD-like helicases superfamily CVS42_12330 SM00840 CVS42_12330 CVS42_12355 SM00387 Histidine kinase-like ATPases CVS42_12355 SM00388 His Kinase A (phosphoacceptor) domain CVS42_12360 SM00448 cheY-homologous receiver domain CVS42_12360 SM00862 Transcriptional regulatory protein, C terminal CVS42_12410 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS42_12410 SM00465 GIY-YIG type nucleases (URI domain) CVS42_12415 SM00421 helix_turn_helix, Lux Regulon CVS42_12415 SM00448 cheY-homologous receiver domain CVS42_12435 SM00382 ATPases associated with a variety of cellular activities CVS42_12440 SM00849 Metallo-beta-lactamase superfamily CVS42_12490 SM00420 helix_turn_helix, Deoxyribose operon repressor CVS42_12490 SM01134 CVS42_12490 CVS42_12510 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_12510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_12610 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_12645 SM00363 S4 RNA-binding domain CVS42_12665 SM00507 HNH nucleases CVS42_12690 SM00900 CVS42_12690 CVS42_12700 SM00478 endonuclease III CVS42_12700 SM00525 CVS42_12700 CVS42_12740 SM00851 MGS-like domain CVS42_12740 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CVS42_12745 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CVS42_12790 SM00382 ATPases associated with a variety of cellular activities CVS42_12800 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_12810 SM00382 ATPases associated with a variety of cellular activities CVS42_12820 SM01005 Alanine racemase, C-terminal domain CVS42_12830 SM00382 ATPases associated with a variety of cellular activities CVS42_12835 SM00382 ATPases associated with a variety of cellular activities CVS42_12875 SM00834 Putative regulatory protein CVS42_12910 SM01126 CVS42_12910 CVS42_12920 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_12920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_12970 SM00984 UDP binding domain CVS42_13050 SM00822 CVS42_13050 CVS42_13075 SM00858 CVS42_13075 CVS42_13165 SM00981 CVS42_13165 CVS42_13185 SM01359 CVS42_13185 CVS42_13185 SM01360 CVS42_13185 CVS42_13195 SM00450 Rhodanese Homology Domain CVS42_13200 SM00052 Putative diguanylate phosphodiesterase CVS42_13200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_13200 SM00091 PAS domain CVS42_13200 SM00267 diguanylate cyclase CVS42_13245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_13245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_13275 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_13275 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_13335 SM00830 Chorismate mutase type II CVS42_13345 SM00491 CVS42_13345 CVS42_13365 SM00098 Alkaline phosphatase homologues CVS42_13370 SM00098 Alkaline phosphatase homologues CVS42_13390 SM00421 helix_turn_helix, Lux Regulon CVS42_13390 SM00448 cheY-homologous receiver domain CVS42_13395 SM00387 Histidine kinase-like ATPases CVS42_13405 SM00267 diguanylate cyclase CVS42_13410 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_13410 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CVS42_13420 SM00382 ATPases associated with a variety of cellular activities CVS42_13425 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_13450 SM01091 Transporter associated domain CVS42_13460 SM00382 ATPases associated with a variety of cellular activities CVS42_13525 SM00382 ATPases associated with a variety of cellular activities CVS42_13525 SM00448 cheY-homologous receiver domain CVS42_13530 SM00091 PAS domain CVS42_13530 SM00387 Histidine kinase-like ATPases CVS42_13530 SM00388 His Kinase A (phosphoacceptor) domain CVS42_13535 SM00382 ATPases associated with a variety of cellular activities CVS42_13560 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_13560 SM00924 MgtE intracellular N domain CVS42_13575 SM00047 Lysozyme subfamily 2 CVS42_13620 SM00138 Methyltransferase, chemotaxis proteins CVS42_13625 SM00260 Two component signalling adaptor domain CVS42_13625 SM00448 cheY-homologous receiver domain CVS42_13630 SM00858 CVS42_13630 CVS42_13660 SM00363 S4 RNA-binding domain CVS42_13665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_13690 SM00420 helix_turn_helix, Deoxyribose operon repressor CVS42_13690 SM01134 CVS42_13690 CVS42_13720 SM00357 Cold shock protein domain CVS42_13730 SM00861 Transketolase, pyrimidine binding domain CVS42_13745 SM00823 Phosphopantetheine attachment site CVS42_13780 SM00354 helix_turn _helix lactose operon repressor CVS42_13790 SM00052 Putative diguanylate phosphodiesterase CVS42_13790 SM00267 diguanylate cyclase CVS42_13865 SM00382 ATPases associated with a variety of cellular activities CVS42_13880 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS42_13935 SM01081 Putative carbohydrate binding domain CVS42_13965 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_13970 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS42_13975 SM00448 cheY-homologous receiver domain CVS42_13975 SM00850 LytTr DNA-binding domain CVS42_13995 SM00487 DEAD-like helicases superfamily CVS42_13995 SM00490 helicase superfamily c-terminal domain CVS42_14035 SM00890 Domain of unknown function CVS42_14045 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_14055 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_14080 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_14080 SM00876 Biotin and Thiamin Synthesis associated domain CVS42_14090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_14155 SM01091 Transporter associated domain CVS42_14175 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_14175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_14235 SM00091 PAS domain CVS42_14235 SM00267 diguanylate cyclase CVS42_14250 SM00382 ATPases associated with a variety of cellular activities CVS42_14280 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS42_14305 SM00354 helix_turn _helix lactose operon repressor CVS42_14310 SM00640 Glycosyl hydrolases family 32 CVS42_14330 SM00271 DnaJ molecular chaperone homology domain CVS42_14355 SM01131 CVS42_14355 CVS42_14365 SM00382 ATPases associated with a variety of cellular activities CVS42_14375 SM00528 Domain in histone-like proteins of HNS family CVS42_14420 SM00822 CVS42_14420 CVS42_14475 SM00382 ATPases associated with a variety of cellular activities CVS42_14610 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_14615 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_14630 SM01321 CVS42_14630 CVS42_14675 SM00363 S4 RNA-binding domain CVS42_14695 SM00481 DNA polymerase alpha chain like domain CVS42_14775 SM00382 ATPases associated with a variety of cellular activities CVS42_14785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS42_14810 SM00448 cheY-homologous receiver domain CVS42_14810 SM00862 Transcriptional regulatory protein, C terminal CVS42_14825 SM00382 ATPases associated with a variety of cellular activities CVS42_14830 SM00382 ATPases associated with a variety of cellular activities CVS42_14865 SM00448 cheY-homologous receiver domain CVS42_14865 SM00862 Transcriptional regulatory protein, C terminal CVS42_14870 SM00387 Histidine kinase-like ATPases CVS42_14895 SM00530 Helix-turn-helix XRE-family like proteins CVS42_14990 SM00267 diguanylate cyclase CVS42_15015 SM00382 ATPases associated with a variety of cellular activities CVS42_15030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_15030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_15035 SM00382 ATPases associated with a variety of cellular activities CVS42_15055 SM00382 ATPases associated with a variety of cellular activities CVS42_15110 SM00671 Sel1-like repeats. CVS42_15145 SM01321 CVS42_15145 CVS42_15155 SM00671 Sel1-like repeats. CVS42_15190 SM00528 Domain in histone-like proteins of HNS family CVS42_15220 SM00530 Helix-turn-helix XRE-family like proteins CVS42_15315 SM00487 DEAD-like helicases superfamily CVS42_15395 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_15410 SM00267 diguanylate cyclase CVS42_15425 SM00530 Helix-turn-helix XRE-family like proteins CVS42_15445 SM00919 Malic enzyme, NAD binding domain CVS42_15445 SM01274 CVS42_15445 CVS42_15450 SM00342 helix_turn_helix, arabinose operon control protein CVS42_15465 SM00267 diguanylate cyclase CVS42_15550 SM00091 PAS domain CVS42_15550 SM00387 Histidine kinase-like ATPases CVS42_15550 SM00388 His Kinase A (phosphoacceptor) domain CVS42_15555 SM00448 cheY-homologous receiver domain CVS42_15555 SM00862 Transcriptional regulatory protein, C terminal CVS42_15565 SM00382 ATPases associated with a variety of cellular activities CVS42_15575 SM00342 helix_turn_helix, arabinose operon control protein CVS42_15585 SM00448 cheY-homologous receiver domain CVS42_15590 SM00387 Histidine kinase-like ATPases CVS42_15595 SM00919 Malic enzyme, NAD binding domain CVS42_15595 SM01274 CVS42_15595 CVS42_15615 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS42_15630 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_15665 SM00292 breast cancer carboxy-terminal domain CVS42_15665 SM00532 Ligase N family CVS42_15670 SM00771 ZipA, C-terminal domain (FtsZ-binding) CVS42_15705 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_15730 SM00642 Alpha-amylase domain CVS42_15740 SM00421 helix_turn_helix, Lux Regulon CVS42_15740 SM00448 cheY-homologous receiver domain CVS42_15765 SM00267 diguanylate cyclase CVS42_15770 SM00977 TilS substrate C-terminal domain CVS42_15800 SM00862 Transcriptional regulatory protein, C terminal CVS42_15820 SM00849 Metallo-beta-lactamase superfamily CVS42_15860 SM00363 S4 RNA-binding domain CVS42_15885 SM00421 helix_turn_helix, Lux Regulon CVS42_15900 SM00829 Enoylreductase CVS42_15910 SM00861 Transketolase, pyrimidine binding domain CVS42_15920 SM00731 SprT homologues. CVS42_15945 SM00732 Likely ribonuclease with RNase H fold. CVS42_15975 SM00460 Transglutaminase/protease-like homologues CVS42_16000 SM00481 DNA polymerase alpha chain like domain CVS42_16030 SM00935 Outer membrane protein (OmpH-like) CVS42_16040 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS42_16085 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_16165 SM00028 Tetratricopeptide repeats CVS42_16170 SM00267 diguanylate cyclase CVS42_16180 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CVS42_16180 SM00475 5'-3' exonuclease CVS42_16185 SM01329 CVS42_16185 CVS42_16215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_16215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_16285 SM00900 CVS42_16285 CVS42_16365 SM00422 helix_turn_helix, mercury resistance CVS42_16400 SM00830 Chorismate mutase type II CVS42_16425 SM00671 Sel1-like repeats. CVS42_16455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_16485 SM00463 Small MutS-related domain CVS42_16525 SM00342 helix_turn_helix, arabinose operon control protein CVS42_16525 SM00478 endonuclease III CVS42_16525 SM01009 AlkA N-terminal domain CVS42_16555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_16560 SM00448 cheY-homologous receiver domain CVS42_16570 SM00073 Histidine Phosphotransfer domain CVS42_16570 SM00260 Two component signalling adaptor domain CVS42_16570 SM00387 Histidine kinase-like ATPases CVS42_16570 SM01231 CVS42_16570 CVS42_16575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_16575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_16580 SM00260 Two component signalling adaptor domain CVS42_16585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_16590 SM00138 Methyltransferase, chemotaxis proteins CVS42_16600 SM00448 cheY-homologous receiver domain CVS42_16605 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_16605 SM00322 K homology RNA-binding domain CVS42_16610 SM01387 CVS42_16610 CVS42_16630 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_16670 SM00382 ATPases associated with a variety of cellular activities CVS42_16680 SM01103 CVS42_16680 CVS42_16715 SM00861 Transketolase, pyrimidine binding domain CVS42_16735 SM00382 ATPases associated with a variety of cellular activities CVS42_16760 SM00020 Trypsin-like serine protease CVS42_16800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_16800 SM00387 Histidine kinase-like ATPases CVS42_16800 SM00388 His Kinase A (phosphoacceptor) domain CVS42_16800 SM00448 cheY-homologous receiver domain CVS42_16815 SM00448 cheY-homologous receiver domain CVS42_16815 SM00862 Transcriptional regulatory protein, C terminal CVS42_16840 SM00052 Putative diguanylate phosphodiesterase CVS42_16840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_16840 SM00091 PAS domain CVS42_16840 SM00267 diguanylate cyclase CVS42_16865 SM00878 Biotin carboxylase C-terminal domain CVS42_16890 SM00829 Enoylreductase CVS42_16900 SM01266 CVS42_16900 CVS42_16925 SM00028 Tetratricopeptide repeats CVS42_16975 SM00382 ATPases associated with a variety of cellular activities CVS42_16980 SM00382 ATPases associated with a variety of cellular activities CVS42_16990 SM00984 UDP binding domain CVS42_17025 SM00382 ATPases associated with a variety of cellular activities CVS42_17050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_17050 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_17060 SM00357 Cold shock protein domain CVS42_17100 SM00479 CVS42_17100 CVS42_17135 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CVS42_17165 SM00271 DnaJ molecular chaperone homology domain CVS42_17195 SM00650 Ribosomal RNA adenine dimethylases CVS42_17210 SM00530 Helix-turn-helix XRE-family like proteins CVS42_17260 SM00244 prohibitin homologues CVS42_17265 SM00244 prohibitin homologues CVS42_17285 SM00853 MutL C terminal dimerisation domain CVS42_17285 SM01340 CVS42_17285 CVS42_17290 SM00257 Lysin motif CVS42_17290 SM00646 CVS42_17290 CVS42_17320 SM00382 ATPases associated with a variety of cellular activities CVS42_17320 SM00930 CVS42_17320 CVS42_17335 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CVS42_17340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_17340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_17350 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CVS42_17355 SM00073 Histidine Phosphotransfer domain CVS42_17355 SM00091 PAS domain CVS42_17355 SM00387 Histidine kinase-like ATPases CVS42_17355 SM00388 His Kinase A (phosphoacceptor) domain CVS42_17355 SM00448 cheY-homologous receiver domain CVS42_17400 SM01130 CVS42_17400 CVS42_17435 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CVS42_17450 SM00448 cheY-homologous receiver domain CVS42_17460 SM00382 ATPases associated with a variety of cellular activities CVS42_17550 SM00014 Acid phosphatase homologues CVS42_17560 SM00917 LeuA allosteric (dimerisation) domain CVS42_17565 SM01329 CVS42_17565 CVS42_17600 SM00382 ATPases associated with a variety of cellular activities CVS42_17605 SM00670 Large family of predicted nucleotide-binding domains CVS42_17645 SM00052 Putative diguanylate phosphodiesterase CVS42_17645 SM00267 diguanylate cyclase CVS42_17660 SM00883 Chaperonin 10 Kd subunit CVS42_17700 SM00400 zinc finger CVS42_17700 SM00493 CVS42_17700 CVS42_17700 SM00766 DNA primase DnaG DnaB-binding CVS42_17720 SM00382 ATPases associated with a variety of cellular activities CVS42_17775 SM01209 CVS42_17775 CVS42_17775 SM01210 CVS42_17775 CVS42_17780 SM00798 AICARFT/IMPCHase bienzyme CVS42_17780 SM00851 MGS-like domain CVS42_17785 SM00422 helix_turn_helix, mercury resistance CVS42_17845 SM00347 helix_turn_helix multiple antibiotic resistance protein CVS42_17855 SM00822 CVS42_17855 CVS42_17860 SM00028 Tetratricopeptide repeats CVS42_17860 SM00267 diguanylate cyclase CVS42_17865 SM00327 von Willebrand factor (vWF) type A domain CVS42_17870 SM00382 ATPases associated with a variety of cellular activities CVS42_17915 SM00829 Enoylreductase CVS42_17975 SM00411 bacterial (prokaryotic) histone like domain CVS42_17990 SM00382 ATPases associated with a variety of cellular activities CVS42_18030 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CVS42_18035 SM01133 CVS42_18035 CVS42_18075 SM00938 Nitrogen regulatory protein P-II CVS42_18160 SM00904 Riboflavin kinase CVS42_18175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CVS42_18205 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CVS42_18215 SM00927 DNA mismatch repair enzyme MutH CVS42_18245 SM00382 ATPases associated with a variety of cellular activities CVS42_18245 SM00962 SRP54-type protein, GTPase domain CVS42_18245 SM00963 SRP54-type protein, helical bundle domain CVS42_18255 SM01091 Transporter associated domain CVS42_18270 SM00671 Sel1-like repeats. CVS42_18290 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_18295 SM00382 ATPases associated with a variety of cellular activities CVS42_18310 SM00382 ATPases associated with a variety of cellular activities CVS42_18325 SM00938 Nitrogen regulatory protein P-II CVS42_18355 SM00382 ATPases associated with a variety of cellular activities CVS42_18375 SM01152 CVS42_18375 CVS42_18450 SM00487 DEAD-like helicases superfamily CVS42_18450 SM00490 helicase superfamily c-terminal domain CVS42_18520 SM00245 tail specific protease CVS42_18580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_18580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_18580 SM01049 CVS42_18580 CVS42_18595 SM00382 ATPases associated with a variety of cellular activities CVS42_18625 SM01266 CVS42_18625 CVS42_18665 SM00342 helix_turn_helix, arabinose operon control protein CVS42_18705 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_18705 SM00895 CVS42_18705 CVS42_18710 SM00644 CVS42_18710 CVS42_18770 SM00957 SecA DEAD-like domain CVS42_18770 SM00958 SecA preprotein cross-linking domain CVS42_18785 SM00864 Tubulin/FtsZ family, GTPase domain CVS42_18785 SM00865 Tubulin/FtsZ family, C-terminal domain CVS42_18790 SM00842 Cell division protein FtsA CVS42_18980 SM00858 CVS42_18980 CVS42_19025 SM00382 ATPases associated with a variety of cellular activities CVS42_19025 SM00448 cheY-homologous receiver domain CVS42_19090 SM00749 bacterial OsmY and nodulation domain CVS42_19140 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS42_19145 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CVS42_19220 SM00382 ATPases associated with a variety of cellular activities CVS42_19240 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_19245 SM00382 ATPases associated with a variety of cellular activities CVS42_19300 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_19340 SM01219 CVS42_19340 CVS42_19470 SM00671 Sel1-like repeats. CVS42_19525 SM01118 CVS42_19525 CVS42_19530 SM01130 CVS42_19530 CVS42_19640 SM00487 DEAD-like helicases superfamily CVS42_19640 SM00490 helicase superfamily c-terminal domain CVS42_19660 SM01266 CVS42_19660 CVS42_19665 SM00642 Alpha-amylase domain CVS42_19675 SM00354 helix_turn _helix lactose operon repressor CVS42_19690 SM00870 CVS42_19690 CVS42_19695 SM01091 Transporter associated domain CVS42_19750 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CVS42_19760 SM00382 ATPases associated with a variety of cellular activities CVS42_19770 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CVS42_19770 SM00534 ATPase domain of DNA mismatch repair MUTS family CVS42_19850 SM00530 Helix-turn-helix XRE-family like proteins CVS42_19880 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_19880 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_19890 SM00267 diguanylate cyclase CVS42_19905 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_19925 SM00357 Cold shock protein domain CVS42_19940 SM01120 CVS42_19940 CVS42_19955 SM00091 PAS domain CVS42_19975 SM00014 Acid phosphatase homologues CVS42_19985 SM00363 S4 RNA-binding domain CVS42_20000 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_20000 SM00895 CVS42_20000 CVS42_20030 SM00267 diguanylate cyclase CVS42_20050 SM00267 diguanylate cyclase CVS42_20080 SM00876 Biotin and Thiamin Synthesis associated domain CVS42_20125 SM00999 Aerolysin toxin CVS42_20140 SM00448 cheY-homologous receiver domain CVS42_20140 SM00862 Transcriptional regulatory protein, C terminal CVS42_20145 SM00388 His Kinase A (phosphoacceptor) domain CVS42_20155 SM01018 B12 binding domain CVS42_20225 SM00886 Stress responsive A/B Barrel Domain CVS42_20235 SM00316 Ribosomal protein S1-like RNA-binding domain CVS42_20305 SM00382 ATPases associated with a variety of cellular activities CVS42_20320 SM00965 Secretin and TonB N terminus short domain CVS42_20350 SM00052 Putative diguanylate phosphodiesterase CVS42_20350 SM00267 diguanylate cyclase CVS42_20355 SM00052 Putative diguanylate phosphodiesterase CVS42_20385 SM00345 helix_turn_helix gluconate operon transcriptional repressor CVS42_20385 SM00866 CVS42_20385 CVS42_20390 SM00947 Carbonic anhydrase CVS42_20405 SM00382 ATPases associated with a variety of cellular activities CVS42_20410 SM00382 ATPases associated with a variety of cellular activities CVS42_20410 SM00962 SRP54-type protein, GTPase domain CVS42_20410 SM00963 SRP54-type protein, helical bundle domain CVS42_20450 SM00822 CVS42_20450 CVS42_20480 SM00155 Phospholipase D. Active site motifs. CVS42_20485 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_20600 SM00838 Elongation factor G C-terminus CVS42_20600 SM00889 Elongation factor G, domain IV CVS42_20640 SM00663 RNA polymerase I subunit A N-terminus CVS42_20665 SM00649 Ribosomal protein L11/L12 CVS42_20670 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CVS42_20670 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CVS42_20725 SM00342 helix_turn_helix, arabinose operon control protein CVS42_20740 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CVS42_20740 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CVS42_20740 SM00493 CVS42_20740 CVS42_20745 SM00448 cheY-homologous receiver domain CVS42_20750 SM00100 Cyclic nucleotide-monophosphate binding domain CVS42_20750 SM00387 Histidine kinase-like ATPases CVS42_20770 SM00387 Histidine kinase-like ATPases CVS42_20775 SM00448 cheY-homologous receiver domain CVS42_20775 SM00862 Transcriptional regulatory protein, C terminal CVS42_20810 SM00382 ATPases associated with a variety of cellular activities CVS42_20810 SM00448 cheY-homologous receiver domain CVS42_20820 SM00387 Histidine kinase-like ATPases CVS42_20820 SM00388 His Kinase A (phosphoacceptor) domain CVS42_20840 SM00116 Domain in cystathionine beta-synthase and other proteins. CVS42_20850 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_20855 SM00344 helix_turn_helix ASNC type CVS42_20865 SM00382 ATPases associated with a variety of cellular activities CVS42_20865 SM01086 C-terminal, D2-small domain, of ClpB protein CVS42_20875 SM00363 S4 RNA-binding domain CVS42_20915 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CVS42_20915 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CVS42_20925 SM00342 helix_turn_helix, arabinose operon control protein CVS42_20935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_20935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_21005 SM00729 Elongator protein 3, MiaB family, Radical SAM CVS42_21055 SM01001 AIR carboxylase CVS42_21075 SM00257 Lysin motif CVS42_21110 SM01230 CVS42_21110 CVS42_21120 SM00091 PAS domain CVS42_21120 SM00387 Histidine kinase-like ATPases CVS42_21120 SM00388 His Kinase A (phosphoacceptor) domain CVS42_21125 SM00382 ATPases associated with a variety of cellular activities CVS42_21125 SM00448 cheY-homologous receiver domain CVS42_21180 SM00530 Helix-turn-helix XRE-family like proteins CVS42_21200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_21200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_21225 SM00671 Sel1-like repeats. CVS42_21240 SM00382 ATPases associated with a variety of cellular activities CVS42_21270 SM00382 ATPases associated with a variety of cellular activities CVS42_21275 SM00563 Phosphate acyltransferases CVS42_21280 SM00563 Phosphate acyltransferases CVS42_21325 SM00267 diguanylate cyclase CVS42_21330 SM00422 helix_turn_helix, mercury resistance CVS42_21360 SM00829 Enoylreductase CVS42_21405 SM01038 Beta galactosidase small chain CVS42_21410 SM00354 helix_turn _helix lactose operon repressor CVS42_21455 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CVS42_21455 SM00474 3'-5' exonuclease CVS42_21455 SM00475 5'-3' exonuclease CVS42_21455 SM00482 DNA polymerase A domain CVS42_21480 SM00971 Serine acetyltransferase, N-terminal CVS42_21490 SM00448 cheY-homologous receiver domain CVS42_21490 SM00862 Transcriptional regulatory protein, C terminal CVS42_21495 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_21495 SM00387 Histidine kinase-like ATPases CVS42_21495 SM00388 His Kinase A (phosphoacceptor) domain CVS42_21525 SM00563 Phosphate acyltransferases CVS42_21560 SM00829 Enoylreductase CVS42_21595 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CVS42_21595 SM01232 CVS42_21595 CVS42_21665 SM00881 CoA binding domain CVS42_21735 SM00448 cheY-homologous receiver domain CVS42_21735 SM00862 Transcriptional regulatory protein, C terminal CVS42_21740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_21740 SM00387 Histidine kinase-like ATPases CVS42_21740 SM00388 His Kinase A (phosphoacceptor) domain CVS42_21780 SM00836 DALR anticodon binding domain CVS42_21790 SM00052 Putative diguanylate phosphodiesterase CVS42_21815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CVS42_21815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CVS42_21835 SM00354 helix_turn _helix lactose operon repressor CVS42_21855 SM00382 ATPases associated with a variety of cellular activities CVS42_21860 SM00382 ATPases associated with a variety of cellular activities CVS42_21865 SM00450 Rhodanese Homology Domain CVS42_21885 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_21885 SM00267 diguanylate cyclase CVS42_21905 SM00357 Cold shock protein domain CVS42_21905 SM00382 ATPases associated with a variety of cellular activities CVS42_21905 SM00959 Rho termination factor, N-terminal domain CVS42_21915 SM00487 DEAD-like helicases superfamily CVS42_21915 SM00490 helicase superfamily c-terminal domain CVS42_21935 SM00062 Bacterial periplasmic substrate-binding proteins CVS42_21940 SM00052 Putative diguanylate phosphodiesterase CVS42_21940 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CVS42_21940 SM00091 PAS domain CVS42_21940 SM00267 diguanylate cyclase CVS42_21950 SM00495 Chitin-binding domain type 3 CVS42_21950 SM00636 CVS42_21950 CVS42_21955 SM00495 Chitin-binding domain type 3 CVS42_21960 SM01004 Delta-aminolevulinic acid dehydratase CVS42_22070 SM00421 helix_turn_helix, Lux Regulon CVS42_22080 SM00420 helix_turn_helix, Deoxyribose operon repressor CVS42_22080 SM01134 CVS42_22080 CVS42_22085 SM00448 cheY-homologous receiver domain CVS42_22085 SM00862 Transcriptional regulatory protein, C terminal CVS42_22090 SM00387 Histidine kinase-like ATPases CVS42_22090 SM00388 His Kinase A (phosphoacceptor) domain CVS42_22120 SM00382 ATPases associated with a variety of cellular activities CVS42_22160 SM00470 ParB-like nuclease domain CVS42_22175 SM01228 CVS42_22175 CVS42_22190 SM00382 ATPases associated with a variety of cellular activities CVS42_22195 SM00382 ATPases associated with a variety of cellular activities