APE_0002	PF03551	Transcriptional regulator PadR-like family
APE_0004	PF02517	CAAX protease self-immunity
APE_0009.1	PF00403	Heavy-metal-associated domain
APE_0010.1	PF01909	Nucleotidyltransferase domain
APE_0010.1	PF13520	Amino acid permease
APE_0011.1	PF01791	DeoC/LacD family aldolase
APE_0012	PF00294	pfkB family carbohydrate kinase
APE_0013.1	PF00920	Dehydratase family
APE_0017.1	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
APE_0017.1	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
APE_0020.1	PF00282	Pyridoxal-dependent decarboxylase conserved domain
APE_0025.1	PF01978	Sugar-specific transcriptional regulator TrmB
APE_0026	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
APE_0028	PF00391	PEP-utilising enzyme, mobile domain
APE_0031.1	PF07690	Major Facilitator Superfamily
APE_0033.1	PF01293	Phosphoenolpyruvate carboxykinase
APE_0035.1	PF01547	Bacterial extracellular solute-binding protein
APE_0038.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0040.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0043.1	PF00005	ABC transporter
APE_0043.1	PF03459	TOBE domain
APE_0045	PF12849	PBP superfamily domain
APE_0047.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0048	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0050	PF00005	ABC transporter
APE_0051	PF01895	PhoU domain
APE_0053.1	PF01557	Fumarylacetoacetate (FAA) hydrolase family
APE_0055	PF03600	Citrate transporter
APE_0056.1	PF00378	Enoyl-CoA hydratase/isomerase family
APE_0060.1	PF00156	Phosphoribosyl transferase domain
APE_0061.1	PF02608	Basic membrane protein
APE_0061.1	PF10518	TAT (twin-arginine translocation) pathway signal sequence
APE_0063	PF00005	ABC transporter
APE_0065	PF02653	APE_0065
APE_0067.1	PF02653	APE_0067.1
APE_0067a	PF02579	Dinitrogenase iron-molybdenum cofactor
APE_0069.1	PF00692	dUTPase
APE_0071.1	PF00174	Oxidoreductase molybdopterin binding domain
APE_0072	PF01578	APE_0072
APE_0073.1	PF01170	Putative RNA methylase family UPF0020
APE_0076.1	PF00892	EamA-like transporter family
APE_0077	PF00994	Probable molybdopterin binding domain
APE_0079	PF02675	S-adenosylmethionine decarboxylase
APE_0080.1	PF01935	Domain of unknown function DUF87
APE_0080.1	PF09378	HAS barrel domain
APE_0082.1	PF09376	NurA domain
APE_0084.1	PF00881	Nitroreductase family
APE_0085.1	PF02811	PHP domain
APE_0085.1	PF13263	PHP-associated
APE_0086	PF00578	AhpC/TSA family
APE_0087.1	PF09943	APE_0087.1
APE_0088.1	PF04014	Antidote-toxin recognition MazE
APE_0089.1	PF01523	Putative modulator of DNA gyrase
APE_0091	PF01523	Putative modulator of DNA gyrase
APE_0092.1	PF00850	Histone deacetylase domain
APE_0093.1	PF04014	Antidote-toxin recognition MazE
APE_0097.1	PF04250	APE_0097.1
APE_0099	PF00136	DNA polymerase family B
APE_0099	PF03104	DNA polymerase family B, exonuclease domain
APE_0101.1	PF02754	APE_0101.1
APE_0101.1	PF13183	4Fe-4S dicluster domain
APE_0103.1	PF00011	Hsp20/alpha crystallin family
APE_0104.1	PF09754	PAC2 family
APE_0104a.1	PF13459	4Fe-4S single cluster domain
APE_0105	PF03193	Protein of unknown function, DUF258
APE_0107	PF01935	Domain of unknown function DUF87
APE_0107	PF05872	APE_0107
APE_0107	PF09378	HAS barrel domain
APE_0109.1	PF09376	NurA domain
APE_0110	PF02463	RecF/RecN/SMC N terminal domain
APE_0110	PF04423	Rad50 zinc hook motif
APE_0110	PF13476	AAA domain
APE_0113	PF00149	Calcineurin-like phosphoesterase
APE_0113a	PF01020	Ribosomal L40e family
APE_0115.1	PF00752	XPG N-terminal domain
APE_0115.1	PF00867	XPG I-region
APE_0116.1	PF04266	ASCH domain
APE_0117.1	PF03129	Anticodon binding domain
APE_0117.1	PF08915	Archaea-specific editing domain of threonyl-tRNA synthetase
APE_0119	PF08423	Rad51
APE_0119	PF14520	Helix-hairpin-helix domain
APE_0122.1	PF01230	HIT domain
APE_0124	PF02272	DHHA1 domain
APE_0125.1	PF13559	APE_0125.1
APE_0127	PF07726	ATPase family associated with various cellular activities (AAA)
APE_0129.1	PF01882	APE_0129.1
APE_0132.1	PF04242	Protein of unknown function (DUF424)
APE_0134.1	PF01012	Electron transfer flavoprotein domain
APE_0135	PF00766	Electron transfer flavoprotein FAD-binding domain
APE_0135	PF01012	Electron transfer flavoprotein domain
APE_0136.1	PF07854	APE_0136.1
APE_0137	PF01019	Gamma-glutamyltranspeptidase
APE_0140.1	PF00582	Universal stress protein family
APE_0141.1	PF10672	S-adenosylmethionine-dependent methyltransferase
APE_0142	PF01325	Iron dependent repressor, N-terminal DNA binding domain
APE_0142	PF02742	Iron dependent repressor, metal binding and dimerisation domain
APE_0143.1	PF03357	Snf7
APE_0146.1	PF03807	NADP oxidoreductase coenzyme F420-dependent
APE_0146.1	PF14748	Pyrroline-5-carboxylate reductase dimerisation
APE_0147.1	PF07998	Peptidase family M54
APE_0148.1	PF01951	Archease protein family (MTH1598/TM1083)
APE_0150.1	PF00730	HhH-GPD superfamily base excision DNA repair protein
APE_0152.1	PF09079	CDC6, C terminal
APE_0152.1	PF13401	AAA domain
APE_0153.1	PF01978	Sugar-specific transcriptional regulator TrmB
APE_0156.1	PF01769	Divalent cation transporter
APE_0157	PF01812	5-formyltetrahydrofolate cyclo-ligase family
APE_0158.1	PF02219	Methylenetetrahydrofolate reductase
APE_0159	PF01040	UbiA prenyltransferase family
APE_0161.1	PF01921	tRNA synthetases class I (K)
APE_0162	PF00705	Proliferating cell nuclear antigen, N-terminal domain
APE_0162	PF02747	Proliferating cell nuclear antigen, C-terminal domain
APE_0163.1	PF00171	Aldehyde dehydrogenase family
APE_0166.1	PF01923	Cobalamin adenosyltransferase
APE_0168.1	PF01381	Helix-turn-helix
APE_0169.1	PF00155	Aminotransferase class I and II
APE_0171.1	PF01113	Dihydrodipicolinate reductase, N-terminus
APE_0171.1	PF02800	Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain
APE_0173.1	PF00162	Phosphoglycerate kinase
APE_0176.1	PF13483	Beta-lactamase superfamily domain
APE_0177	PF00994	Probable molybdopterin binding domain
APE_0177	PF03453	MoeA N-terminal region (domain I and II)
APE_0178.1	PF03205	Molybdopterin guanine dinucleotide synthesis protein B
APE_0179	PF12804	MobA-like NTP transferase domain
APE_0179a	PF01781	Ribosomal L38e protein family
APE_0181	PF00753	Metallo-beta-lactamase superfamily
APE_0181	PF07521	RNA-metabolising metallo-beta-lactamase
APE_0181	PF10996	Beta-Casp domain
APE_0182.1	PF02594	Uncharacterised ACR, YggU family COG1872
APE_0183.1	PF01925	APE_0183.1
APE_0184.1	PF07690	Major Facilitator Superfamily
APE_0187	PF05916	GINS complex protein
APE_0188.1	PF00493	MCM2/3/5 family
APE_0188.1	PF14551	MCM N-terminal domain
APE_0188.1	PF17207	APE_0188.1
APE_0191.1	PF00270	DEAD/DEAH box helicase
APE_0191.1	PF00271	Helicase conserved C-terminal domain
APE_0191.1	PF14520	Helix-hairpin-helix domain
APE_0193.1	PF03721	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain
APE_0193.1	PF16653	APE_0193.1
APE_0197.1	PF13560	Helix-turn-helix domain
APE_0199.1	PF13231	APE_0199.1
APE_0204.1	PF01885	RNA 2'-phosphotransferase, Tpt1 / KptA family
APE_0207	PF06677	APE_0207
APE_0209.1	PF02163	Peptidase family M50
APE_0209.1	PF13180	PDZ domain
APE_0212.1	PF00675	Insulinase (Peptidase family M16)
APE_0212.1	PF05193	Peptidase M16 inactive domain
APE_0213.1	PF01909	Nucleotidyltransferase domain
APE_0216.1	PF08241	Methyltransferase domain
APE_0218	PF00181	Ribosomal Proteins L2, RNA binding domain
APE_0218	PF03947	Ribosomal Proteins L2, C-terminal domain
APE_0219	PF01935	Domain of unknown function DUF87
APE_0222.1	PF13714	Phosphoenolpyruvate phosphomutase
APE_0226.1	PF02598	Putative RNA methyltransferase
APE_0227	PF00297	Ribosomal protein L3
APE_0228.1	PF00573	Ribosomal protein L4/L1 family
APE_0228a.1	PF00276	Ribosomal protein L23
APE_0230.1	PF10609	ParA/MinD ATPase like
APE_0231	PF00571	CBS domain
APE_0233	PF00571	CBS domain
APE_0234	PF00571	CBS domain
APE_0235.1	PF00586	AIR synthase related protein, N-terminal domain
APE_0236.1	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
APE_0237.1	PF06778	Chlorite dismutase
APE_0244.1	PF01174	SNO glutamine amidotransferase family
APE_0246.1	PF01680	SOR/SNZ family
APE_0248.1	PF02621	Menaquinone biosynthesis
APE_0249.1	PF04055	Radical SAM superfamily
APE_0252	PF04055	Radical SAM superfamily
APE_0254	PF02621	Menaquinone biosynthesis
APE_0255.1	PF00483	Nucleotidyl transferase
APE_0256	PF04019	APE_0256
APE_0256a.1	PF06093	Spt4/RpoE2 zinc finger
APE_0257	PF00575	S1 RNA binding domain
APE_0257	PF03876	SHS2 domain found in N terminus of Rpb7p/Rpc25p/MJ0397
APE_0257a	PF00037	4Fe-4S binding domain
APE_0258.1	PF02589	Uncharacterised ACR, YkgG family COG1556
APE_0260.1	PF01180	Dihydroorotate dehydrogenase
APE_0261.1	PF01979	Amidohydrolase family
APE_0262	PF03009	Glycerophosphoryl diester phosphodiesterase family
APE_0263.1	PF00082	Subtilase family
APE_0264.1	PF13643	APE_0264.1
APE_0266.1	PF01314	Aldehyde ferredoxin oxidoreductase, domains 2 & 3
APE_0266.1	PF02730	Aldehyde ferredoxin oxidoreductase, N-terminal domain
APE_0266a.1	PF01998	APE_0266a.1
APE_0267	PF00571	CBS domain
APE_0270.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0272.1	PF13531	Bacterial extracellular solute-binding protein
APE_0273	PF01850	PIN domain
APE_0273a	PF01954	Protein of unknown function DUF104
APE_0275.1	PF00730	HhH-GPD superfamily base excision DNA repair protein
APE_0275a	PF10049	APE_0275a
APE_0275b.1	PF01048	Phosphorylase superfamily
APE_0276.1	PF11848	APE_0276.1
APE_0276a	PF03683	APE_0276a
APE_0278	PF10130	APE_0278
APE_0279.1	PF01850	PIN domain
APE_0279a.1	PF01954	Protein of unknown function DUF104
APE_0283a	PF01954	Protein of unknown function DUF104
APE_0287	PF11563	Protoglobin
APE_0288	PF12802	MarR family
APE_0290.1	PF12840	Helix-turn-helix domain
APE_0291	PF00578	AhpC/TSA family
APE_0293	PF01022	Bacterial regulatory protein, arsR family
APE_0294.1	PF13473	Cupredoxin-like domain
APE_0300.1	PF00005	ABC transporter
APE_0300.1	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_0301.1	PF00005	ABC transporter
APE_0301.1	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_0302.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0302.1	PF12911	APE_0302.1
APE_0303	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0304.1	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
APE_0304.1	PF00801	PKD domain
APE_0306.1	PF00370	FGGY family of carbohydrate kinases, N-terminal domain
APE_0306.1	PF02782	FGGY family of carbohydrate kinases, C-terminal domain
APE_0308.1	PF01565	FAD binding domain
APE_0308.1	PF02913	FAD linked oxidases, C-terminal domain
APE_0309.1	PF01266	FAD dependent oxidoreductase
APE_0311	PF03328	HpcH/HpaI aldolase/citrate lyase family
APE_0313.1	PF01980	Uncharacterised protein family UPF0066
APE_0314.1	PF04951	D-aminopeptidase
APE_0316.1	PF00491	Arginase family
APE_0317.1	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
APE_0317.1	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
APE_0317.1	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
APE_0317.1	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
APE_0319	PF01965	DJ-1/PfpI family
APE_0320.1	PF00037	4Fe-4S binding domain
APE_0322.1	PF06733	DEAD_2
APE_0322.1	PF13307	Helicase C-terminal domain
APE_0326.1	PF06068	TIP49 C-terminus
APE_0330.1	PF00753	Metallo-beta-lactamase superfamily
APE_0333.1	PF00692	dUTPase
APE_0336.1	PF01804	Penicillin amidase
APE_0337.1	PF01244	Membrane dipeptidase (Peptidase family M19)
APE_0338.1	PF00144	Beta-lactamase
APE_0339.1	PF04041	Domain of unknown function (DUF377)
APE_0340.1	PF14871	APE_0340.1
APE_0342.1	PF03061	Thioesterase superfamily
APE_0343	PF00828	Ribosomal protein L18e/L15
APE_0345.1	PF00327	Ribosomal protein L30p/L7e
APE_0346	PF00333	Ribosomal protein S5, N-terminal domain
APE_0346	PF03719	Ribosomal protein S5, C-terminal domain
APE_0347	PF14204	Ribosomal L18 C-terminal region
APE_0347	PF17144	APE_0347
APE_0348	PF01280	Ribosomal protein L19e
APE_0349	PF01655	Ribosomal protein L32
APE_0350	PF00347	Ribosomal protein L6
APE_0352.1	PF00410	Ribosomal protein S8
APE_0352a	PF00253	Ribosomal protein S14p/S29e
APE_0354.1	PF00281	Ribosomal protein L5
APE_0354.1	PF00673	ribosomal L5P family C-terminus
APE_0356.1	PF00900	Ribosomal family S4e
APE_0356.1	PF01479	S4 domain
APE_0356.1	PF08071	RS4NT (NUC023) domain
APE_0358	PF00467	KOW motif
APE_0358	PF16906	APE_0358
APE_0359	PF00238	Ribosomal protein L14p/L23e
APE_0360.1	PF00366	Ribosomal protein S17
APE_0362	PF01868	Domain of unknown function UPF0086
APE_0362a	PF00831	Ribosomal L29 protein
APE_0363	PF00189	Ribosomal protein S3, C-terminal domain
APE_0363	PF07650	KH domain
APE_0365	PF00237	Ribosomal protein L22p/L17e
APE_0367.1	PF00203	Ribosomal protein S19
APE_0370	PF05762	VWA domain containing CoxE-like protein
APE_0372.1	PF07728	AAA domain (dynein-related subfamily)
APE_0373	PF12705	PD-(D/E)XK nuclease superfamily
APE_0374	PF00133	tRNA synthetases class I (I, L, M and V)
APE_0374	PF08264	Anticodon-binding domain of tRNA
APE_0381.1	PF01842	ACT domain
APE_0381.1	PF02381	MraZ protein
APE_0382	PF00753	Metallo-beta-lactamase superfamily
APE_0383.1	PF00571	CBS domain
APE_0385.1	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_0385.1	PF02770	Acyl-CoA dehydrogenase, middle domain
APE_0389	PF00583	Acetyltransferase (GNAT) family
APE_0390	PF00583	Acetyltransferase (GNAT) family
APE_0392	PF00390	Malic enzyme, N-terminal domain
APE_0392	PF03949	Malic enzyme, NAD binding domain
APE_0396.1	PF00501	AMP-binding enzyme
APE_0396.1	PF13193	AMP-binding enzyme C-terminal domain
APE_0401.1	PF00696	Amino acid kinase family
APE_0402.1	PF01813	ATP synthase subunit D
APE_0404.1	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
APE_0404.1	PF02874	ATP synthase alpha/beta family, beta-barrel domain
APE_0405.1	PF00006	ATP synthase alpha/beta family, nucleotide-binding domain
APE_0405.1	PF02874	ATP synthase alpha/beta family, beta-barrel domain
APE_0405.1	PF16886	APE_0405.1
APE_0409.1	PF01991	ATP synthase (E/31 kDa) subunit
APE_0410.1	PF01990	ATP synthase (F/14-kDa) subunit
APE_0412	PF00282	Pyridoxal-dependent decarboxylase conserved domain
APE_0413	PF00271	Helicase conserved C-terminal domain
APE_0413	PF04851	Type III restriction enzyme, res subunit
APE_0413	PF13020	APE_0413
APE_0415	PF04465	APE_0415
APE_0416.1	PF06634	APE_0416.1
APE_0416b.1	PF01402	Ribbon-helix-helix protein, copG family
APE_0421	PF01902	ATP-binding region
APE_0423.1	PF01026	TatD related DNase
APE_0426.1	PF00535	Glycosyl transferase family 2
APE_0426.1	PF04138	APE_0426.1
APE_0427.1	PF03167	Uracil DNA glycosylase superfamily
APE_0433	PF01864	APE_0433
APE_0433a	PF04135	Nucleolar RNA-binding protein, Nop10p family
APE_0436.1	PF00575	S1 RNA binding domain
APE_0436.1	PF07541	Eukaryotic translation initiation factor 2 alpha subunit
APE_0436a	PF01667	Ribosomal protein S27
APE_0436b.1	PF00935	Ribosomal protein L44
APE_0438.1	PF01896	Eukaryotic and archaeal DNA primase small subunit
APE_0441.1	PF00705	Proliferating cell nuclear antigen, N-terminal domain
APE_0441.1	PF02747	Proliferating cell nuclear antigen, C-terminal domain
APE_0442.1	PF01096	Transcription factor S-II (TFIIS)
APE_0442.1	PF02150	RNA polymerases M/15 Kd subunit
APE_0443.1	PF13656	RNA polymerase Rpb3/Rpb11 dimerisation domain
APE_0444.1	PF09840	APE_0444.1
APE_0445	PF14382	Exosome complex exonuclease RRP4 N-terminal region
APE_0446	PF03602	Conserved hypothetical protein 95
APE_0447.1	PF01866	Putative diphthamide synthesis protein
APE_0449	PF00252	Ribosomal protein L16p/L10e
APE_0450	PF00994	Probable molybdopterin binding domain
APE_0450	PF03453	MoeA N-terminal region (domain I and II)
APE_0450	PF03454	MoeA C-terminal region (domain IV)
APE_0450a	PF11520	Chromatin protein Cren7
APE_0454	PF03749	Sugar fermentation stimulation protein
APE_0457	PF00202	Aminotransferase class-III
APE_0461	PF01870	Archaeal holliday junction resolvase (hjc)
APE_0462	PF00437	Type II/IV secretion system protein
APE_0465.1	PF02568	Thiamine biosynthesis protein (ThiI)
APE_0465.1	PF02926	THUMP domain
APE_0470.1	PF12679	APE_0470.1
APE_0471.1	PF00005	ABC transporter
APE_0471a	PF01850	PIN domain
APE_0472	PF10130	APE_0472
APE_0472b.1	PF01954	Protein of unknown function DUF104
APE_0473.1	PF04014	Antidote-toxin recognition MazE
APE_0475.1	PF09079	CDC6, C terminal
APE_0475.1	PF13191	AAA ATPase domain
APE_0476.1	PF01949	Protein of unknown function DUF99
APE_0478.1	PF04055	Radical SAM superfamily
APE_0478.1	PF06463	Molybdenum Cofactor Synthesis C
APE_0481.1	PF13183	4Fe-4S dicluster domain
APE_0487	PF01565	FAD binding domain
APE_0487	PF02913	FAD linked oxidases, C-terminal domain
APE_0488.1	PF09970	APE_0488.1
APE_0489	PF00224	Pyruvate kinase, barrel domain
APE_0490.1	PF00156	Phosphoribosyl transferase domain
APE_0492.1	PF00881	Nitroreductase family
APE_0493.1	PF01008	Initiation factor 2 subunit family
APE_0496.1	PF01351	Ribonuclease HII
APE_0498	PF04252	APE_0498
APE_0502	PF03587	EMG1/NEP1 methyltransferase
APE_0503.1	PF09921	APE_0503.1
APE_0505	PF03966	Trm112p-like protein
APE_0506	PF04493	Endonuclease V
APE_0507.1	PF00227	Proteasome subunit
APE_0508.1	PF08271	TFIIB zinc-binding
APE_0510.1	PF01926	50S ribosome-binding GTPase
APE_0511.1	PF01137	RNA 3'-terminal phosphate cyclase
APE_0511.1	PF05189	RNA 3'-terminal phosphate cyclase (RTC), insert domain
APE_0513.1	PF01467	Cytidylyltransferase
APE_0514	PF01189	NOL1/NOP2/sun family
APE_0514	PF17125	APE_0514
APE_0516.1	PF03657	Uncharacterised protein family (UPF0113)
APE_0517	PF00254	FKBP-type peptidyl-prolyl cis-trans isomerase
APE_0519.1	PF13685	Iron-containing alcohol dehydrogenase
APE_0521.1	PF00227	Proteasome subunit
APE_0522.1	PF07521	RNA-metabolising metallo-beta-lactamase
APE_0522.1	PF10996	Beta-Casp domain
APE_0522.1	PF16661	APE_0522.1
APE_0522.1	PF17214	APE_0522.1
APE_0525.1	PF01472	PUA domain
APE_0525.1	PF09183	Domain of unknown function (DUF1947)
APE_0525a	PF01423	LSM domain
APE_0525b	PF01907	Ribosomal protein L37e
APE_0526.1	PF00557	Metallopeptidase family M24
APE_0526.1	PF01321	Creatinase/Prolidase N-terminal domain
APE_0528	PF03069	Acetamidase/Formamidase family
APE_0531.1	PF01297	Periplasmic solute binding protein family
APE_0532.1	PF00005	ABC transporter
APE_0534.1	PF00950	APE_0534.1
APE_0535	PF08753	NikR C terminal nickel binding domain
APE_0535	PF12651	APE_0535
APE_0537.1	PF01171	PP-loop family
APE_0537a	PF01294	Ribosomal protein L13e
APE_0540.1	PF16575	APE_0540.1
APE_0543	PF07690	Major Facilitator Superfamily
APE_0545.1	PF14681	Uracil phosphoribosyltransferase
APE_0546.1	PF02926	THUMP domain
APE_0546a	PF01157	Ribosomal protein L21e
APE_0550	PF04919	Protein of unknown function (DUF655)
APE_0553	PF00398	Ribosomal RNA adenine dimethylase
APE_0554.1	PF06325	Ribosomal protein L11 methyltransferase (PrmA)
APE_0555.1	PF00588	SpoU rRNA Methylase family
APE_0557	PF01170	Putative RNA methylase family UPF0020
APE_0557	PF02926	THUMP domain
APE_0558.1	PF13458	Periplasmic binding protein
APE_0560	PF09910	APE_0560
APE_0562.1	PF03807	NADP oxidoreductase coenzyme F420-dependent
APE_0562a	PF01817	Chorismate mutase type II
APE_0564	PF01264	Chorismate synthase
APE_0569	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
APE_0572	PF00288	GHMP kinases N terminal domain
APE_0572	PF08544	GHMP kinases C terminal
APE_0574.1	PF01488	Shikimate / quinate 5-dehydrogenase
APE_0574.1	PF08501	Shikimate dehydrogenase substrate binding domain
APE_0577	PF01487	Type I 3-dehydroquinase
APE_0579	PF01761	3-dehydroquinate synthase
APE_0581.1	PF00793	DAHP synthetase I family
APE_0583	PF02779	Transketolase, pyrimidine binding domain
APE_0583	PF02780	Transketolase, C-terminal domain
APE_0586.1	PF00456	Transketolase, thiamine diphosphate binding domain
APE_0591.1	PF00378	Enoyl-CoA hydratase/isomerase family
APE_0594a.1	PF14947	Winged helix-turn-helix
APE_0595.1	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_0600	PF00293	NUDIX domain
APE_0603	PF02391	MoaE protein
APE_0605.1	PF13519	von Willebrand factor type A domain
APE_0607	PF00082	Subtilase family
APE_0620.1	PF13620	Carboxypeptidase regulatory-like domain
APE_0620a	PF03819	MazG nucleotide pyrophosphohydrolase domain
APE_0621.1	PF01884	PcrB family
APE_0623.1	PF05129	Transcription elongation factor Elf1 like
APE_0624.1	PF00670	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
APE_0624.1	PF05221	S-adenosyl-L-homocysteine hydrolase
APE_0632.1	PF01546	Peptidase family M20/M25/M40
APE_0632.1	PF07687	Peptidase dimerisation domain
APE_0636	PF12706	Beta-lactamase superfamily domain
APE_0639.1	PF02675	S-adenosylmethionine decarboxylase
APE_0641	PF00085	Thioredoxin
APE_0644.1	PF04055	Radical SAM superfamily
APE_0644.1	PF13394	4Fe-4S single cluster domain
APE_0650.1	PF00391	PEP-utilising enzyme, mobile domain
APE_0650.1	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
APE_0650.1	PF02896	PEP-utilising enzyme, TIM barrel domain
APE_0650a.1	PF03911	Sec61beta family
APE_0656.1	PF08489	Domain of unknown function (DUF1743)
APE_0656a	PF01037	AsnC family
APE_0662.1	PF03129	Anticodon binding domain
APE_0662.1	PF13393	Histidyl-tRNA synthetase
APE_0663	PF04434	APE_0663
APE_0665	PF06026	Ribose 5-phosphate isomerase A (phosphoriboisomerase A)
APE_0669.1	PF03070	TENA/THI-4/PQQC family
APE_0671	PF07690	Major Facilitator Superfamily
APE_0672.1	PF00056	lactate/malate dehydrogenase, NAD binding domain
APE_0672.1	PF02866	lactate/malate dehydrogenase, alpha/beta C-terminal domain
APE_0673.1	PF01496	V-type ATPase 116kDa subunit family
APE_0674.1	PF00155	Aminotransferase class I and II
APE_0675.1	PF01588	Putative tRNA binding domain
APE_0676	PF02548	Ketopantoate hydroxymethyltransferase
APE_0677.1	PF02558	Ketopantoate reductase PanE/ApbA
APE_0677.1	PF08546	Ketopantoate reductase PanE/ApbA C terminal
APE_0680.1	PF03061	Thioesterase superfamily
APE_0680a.1	PF02680	Uncharacterized ArCR, COG1888
APE_0681.1	PF14464	Prokaryotic homologs of the JAB domain
APE_0682.1	PF12850	Calcineurin-like phosphoesterase superfamily domain
APE_0682a.1	PF10049	APE_0682a.1
APE_0683	PF12710	haloacid dehalogenase-like hydrolase
APE_0685	PF01974	tRNA intron endonuclease, catalytic C-terminal domain
APE_0686	PF01008	Initiation factor 2 subunit family
APE_0688	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
APE_0689.1	PF00180	Isocitrate/isopropylmalate dehydrogenase
APE_0695.1	PF00437	Type II/IV secretion system protein
APE_0698.1	PF01916	Deoxyhypusine synthase
APE_0702.1	PF02195	ParB-like nuclease domain
APE_0703.1	PF04406	Type IIB DNA topoisomerase
APE_0706.1	PF02518	Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
APE_0706.1	PF09239	Topoisomerase VI B subunit, transducer
APE_0708.1	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APE_0708.1	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
APE_0710.1	PF09171	Domain of unknown function (DUF1886)
APE_0712.1	PF02746	Mandelate racemase / muconate lactonizing enzyme, N-terminal domain
APE_0712.1	PF13378	Enolase C-terminal domain-like
APE_0715.1	PF02386	Cation transport protein
APE_0716.1	PF16795	APE_0716.1
APE_0720a	PF09339	IclR helix-turn-helix domain
APE_0727	PF16317	APE_0727
APE_0739	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_0739	PF02770	Acyl-CoA dehydrogenase, middle domain
APE_0741	PF00081	Iron/manganese superoxide dismutases, alpha-hairpin domain
APE_0741	PF02777	Iron/manganese superoxide dismutases, C-terminal domain
APE_0745.1	PF06745	KaiC
APE_0745.1	PF14890	Intein splicing domain
APE_0748.1	PF04981	APE_0748.1
APE_0748a	PF01176	Translation initiation factor 1A / IF-1
APE_0751	PF01163	RIO1 family
APE_0754.1	PF00013	KH domain
APE_0756.1	PF03446	NAD binding domain of 6-phosphogluconate dehydrogenase
APE_0756.1	PF14833	NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase
APE_0760.1	PF05168	HEPN domain
APE_0761.1	PF01909	Nucleotidyltransferase domain
APE_0763.1	PF01370	NAD dependent epimerase/dehydratase family
APE_0766	PF08282	haloacid dehalogenase-like hydrolase
APE_0767.1	PF01564	Spermine/spermidine synthase
APE_0767.1	PF17284	APE_0767.1
APE_0768.1	PF10432	Bacterial phospho-glucose isomerase C-terminal region
APE_0771.1	PF04123	APE_0771.1
APE_0772	PF01922	SRP19 protein
APE_0775	PF13192	Thioredoxin domain
APE_0777	PF00149	Calcineurin-like phosphoesterase
APE_0778	PF01381	Helix-turn-helix
APE_0781.1	PF03266	NTPase
APE_0782.1	PF02005	N2,N2-dimethylguanosine tRNA methyltransferase
APE_0784.1	PF01047	MarR family
APE_0785.1	PF00571	CBS domain
APE_0787.1	PF00382	Transcription factor TFIIB repeat
APE_0788.1	PF01931	Protein of unknown function DUF84
APE_0789	PF01201	Ribosomal protein S8e
APE_0791.1	PF03029	Conserved hypothetical ATP binding protein
APE_0792.1	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
APE_0793.1	PF00115	Cytochrome C and Quinol oxidase polypeptide I
APE_0793.1	PF00510	Cytochrome c oxidase subunit III
APE_0795.1	PF03626	APE_0795.1
APE_0796.1	PF02630	SCO1/SenC
APE_0797	PF04013	Putative SAM-dependent RNA methyltransferase
APE_0798	PF04191	Phospholipid methyltransferase
APE_0800.1	PF01266	FAD dependent oxidoreductase
APE_0801.1	PF01975	Survival protein SurE
APE_0805	PF00589	Phage integrase family
APE_0807.1	PF00171	Aldehyde dehydrogenase family
APE_0809.1	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
APE_0809.1	PF03129	Anticodon binding domain
APE_0815.1	PF02475	Met-10+ like-protein
APE_0816	PF02676	Methyltransferase TYW3
APE_0818.1	PF00589	Phage integrase family
APE_0824	PF01435	Peptidase family M48
APE_0872.1	PF00145	C-5 cytosine-specific DNA methylase
APE_0875.1	PF00730	HhH-GPD superfamily base excision DNA repair protein
APE_0875.1	PF10576	Iron-sulfur binding domain of endonuclease III
APE_0880b	PF09339	IclR helix-turn-helix domain
APE_0883a	PF01402	Ribbon-helix-helix protein, copG family
APE_0889.1	PF09488	Mannosyl-3-phosphoglycerate synthase (osmo_MPGsynth)
APE_0890	PF11848	APE_0890
APE_0890a.1	PF03683	APE_0890a.1
APE_0891	PF05425	APE_0891
APE_0892.1	PF07728	AAA domain (dynein-related subfamily)
APE_0900.1	PF14542	GCN5-related N-acetyl-transferase
APE_0903.1	PF01411	tRNA synthetases class II (A)
APE_0903.1	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
APE_0907.1	PF00118	TCP-1/cpn60 chaperonin family
APE_0912	PF13561	Enoyl-(Acyl carrier protein) reductase
APE_0914	PF01192	RNA polymerase Rpb6
APE_0915.1	PF02163	Peptidase family M50
APE_0916.1	PF02423	Ornithine cyclodeaminase/mu-crystallin family
APE_0917	PF13458	Periplasmic binding protein
APE_0919	PF00005	ABC transporter
APE_0919	PF12399	Branched-chain amino acid ATP-binding cassette transporter
APE_0921	PF00005	ABC transporter
APE_0922	PF02653	APE_0922
APE_0924.1	PF02653	APE_0924.1
APE_0929.1	PF00108	Thiolase, N-terminal domain
APE_0929.1	PF02803	Thiolase, C-terminal domain
APE_0930.1	PF01796	APE_0930.1
APE_0930.1	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
APE_0931	PF00590	Tetrapyrrole (Corrin/Porphyrin) Methylases
APE_0932.1	PF04055	Radical SAM superfamily
APE_0935	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_0939	PF04457	APE_0939
APE_0941	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0943	PF00528	Binding-protein-dependent transport system inner membrane component
APE_0944.1	PF00005	ABC transporter
APE_0944.1	PF08402	TOBE domain
APE_0945.1	PF13416	Bacterial extracellular solute-binding protein
APE_0946	PF13085	2Fe-2S iron-sulfur cluster binding domain
APE_0946	PF13183	4Fe-4S dicluster domain
APE_0947	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
APE_0948.1	PF01127	Succinate dehydrogenase/Fumarate reductase transmembrane subunit
APE_0950.1	PF00890	FAD binding domain
APE_0950.1	PF02910	Fumarate reductase flavoprotein C-term
APE_0951.1	PF01597	Glycine cleavage H-protein
APE_0952.1	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
APE_0954	PF02633	Creatinine amidohydrolase
APE_0955	PF00520	Ion transport protein
APE_0957	PF01939	Protein of unknown function DUF91
APE_0957a	PF01423	LSM domain
APE_0959	PF01035	6-O-methylguanine DNA methyltransferase, DNA binding domain
APE_0960	PF00004	ATPase family associated with various cellular activities (AAA)
APE_0960	PF09336	Vps4 C terminal oligomerisation domain
APE_0964.1	PF03602	Conserved hypothetical protein 95
APE_0965.1	PF00892	EamA-like transporter family
APE_0966.1	PF00149	Calcineurin-like phosphoesterase
APE_0972.1	PF00474	Sodium:solute symporter family
APE_0973.1	PF06626	APE_0973.1
APE_0973b	PF01402	Ribbon-helix-helix protein, copG family
APE_0974.1	PF00571	CBS domain
APE_0974.1	PF03444	Winged helix-turn-helix transcription repressor, HrcA DNA-binding
APE_0975	PF09958	APE_0975
APE_0978.1	PF13207	AAA domain
APE_0978a	PF01199	Ribosomal protein L34e
APE_0979.1	PF01425	Amidase
APE_0981.1	PF13207	AAA domain
APE_0983.1	PF00344	SecY translocase
APE_0983.1	PF10559	Plug domain of Sec61p
APE_0986.1	PF00926	3,4-dihydroxy-2-butanone 4-phosphate synthase
APE_0988	PF00885	6,7-dimethyl-8-ribityllumazine synthase
APE_0993.1	PF01048	Phosphorylase superfamily
APE_0996.1	PF05161	MOFRL family
APE_0996.1	PF13660	Domain of unknown function (DUF4147)
APE_1000.1	PF03168	Late embryogenesis abundant protein
APE_1001.1	PF09594	APE_1001.1
APE_1003.1	PF04389	Peptidase family M28
APE_1007a	PF02150	RNA polymerases M/15 Kd subunit
APE_1009.1	PF04027	Domain of unknown function (DUF371)
APE_1011.1	PF01135	Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT)
APE_1013.1	PF07790	APE_1013.1
APE_1014.1	PF01026	TatD related DNase
APE_1015	PF00133	tRNA synthetases class I (I, L, M and V)
APE_1015	PF08264	Anticodon-binding domain of tRNA
APE_1023.1	PF00701	Dihydrodipicolinate synthetase family
APE_1026.1	PF00005	ABC transporter
APE_1031.1	PF13519	von Willebrand factor type A domain
APE_1035.1	PF07728	AAA domain (dynein-related subfamily)
APE_1038.1	PF00383	Cytidine and deoxycytidylate deaminase zinc-binding region
APE_1041	PF06695	APE_1041
APE_1043.1	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_1044	PF00881	Nitroreductase family
APE_1045.1	PF01435	Peptidase family M48
APE_1047.1	PF01008	Initiation factor 2 subunit family
APE_1049.1	PF01497	Periplasmic binding protein
APE_1053.1	PF01032	FecCD transport family
APE_1055.1	PF00005	ABC transporter
APE_1056.1	PF01871	AMMECR1
APE_1059	PF04055	Radical SAM superfamily
APE_1059	PF08608	Wyosine base formation
APE_1061.1	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_1065.1	PF00549	CoA-ligase
APE_1065.1	PF08442	ATP-grasp domain
APE_1072.1	PF00549	CoA-ligase
APE_1072.1	PF02629	CoA binding domain
APE_1073	PF04851	Type III restriction enzyme, res subunit
APE_1073	PF16203	APE_1073
APE_1080.1	PF00156	Phosphoribosyl transferase domain
APE_1081.1	PF00448	SRP54-type protein, GTPase domain
APE_1081.1	PF02881	SRP54-type protein, helical bundle domain
APE_1084.1	PF02996	Prefoldin subunit
APE_1084a	PF01775	Ribosomal L18ae/LX protein domain
APE_1085	PF01912	eIF-6 family
APE_1087.1	PF01198	Ribosomal protein L31e
APE_1087a	PF00832	Ribosomal L39 protein
APE_1087b	PF01984	Double-stranded DNA-binding domain
APE_1090	PF01090	Ribosomal protein S19e
APE_1091	PF01985	CRS1 / YhbY (CRM) domain
APE_1092.1	PF04032	RNAse P Rpr2/Rpp21/SNM1 subunit domain
APE_1094.1	PF01068	ATP dependent DNA ligase domain
APE_1094.1	PF04675	DNA ligase N terminus
APE_1094.1	PF04679	ATP dependent DNA ligase C terminal region
APE_1098	PF01189	NOL1/NOP2/sun family
APE_1098	PF01472	PUA domain
APE_1102	PF17146	APE_1102
APE_1104.1	PF01513	ATP-NAD kinase
APE_1106.1	PF02475	Met-10+ like-protein
APE_1109.1	PF01950	Fructose-1,6-bisphosphatase
APE_1114.1	PF00557	Metallopeptidase family M24
APE_1117	PF13483	Beta-lactamase superfamily domain
APE_1119.1	PF00005	ABC transporter
APE_1119.1	PF00037	4Fe-4S binding domain
APE_1119.1	PF04068	Possible Fer4-like domain in RNase L inhibitor, RLI
APE_1123.1	PF07431	APE_1123.1
APE_1129	PF08264	Anticodon-binding domain of tRNA
APE_1129	PF09334	tRNA synthetases class I (M)
APE_1132.1	PF01282	Ribosomal protein S24e
APE_1132a	PF01599	Ribosomal protein S27a
APE_1135	PF00814	Glycoprotease family
APE_1136.1	PF01163	RIO1 family
APE_1138.1	PF01725	Ham1 family
APE_1139	PF00312	Ribosomal protein S15
APE_1139	PF08069	Ribosomal S13/S15 N-terminal domain
APE_1140.1	PF00696	Amino acid kinase family
APE_1140.1	PF01842	ACT domain
APE_1143	PF01118	Semialdehyde dehydrogenase, NAD binding domain
APE_1143	PF02774	Semialdehyde dehydrogenase, dimerisation domain
APE_1144.1	PF00742	Homoserine dehydrogenase
APE_1154.1	PF01015	Ribosomal S3Ae family
APE_1156.1	PF02926	THUMP domain
APE_1156.1	PF14419	AF2226-like SPOUT RNA Methylase fused to THUMP
APE_1158.1	PF04055	Radical SAM superfamily
APE_1161.1	PF01900	Rpp14/Pop5 family
APE_1164	PF01926	50S ribosome-binding GTPase
APE_1164	PF02824	TGS domain
APE_1164	PF08438	GTPase of unknown function C-terminal
APE_1167.1	PF01172	Shwachman-Bodian-Diamond syndrome (SBDS) protein
APE_1167.1	PF09377	SBDS protein C-terminal domain
APE_1169.1	PF12850	Calcineurin-like phosphoesterase superfamily domain
APE_1178	PF00908	dTDP-4-dehydrorhamnose 3,5-epimerase
APE_1179.1	PF04321	RmlD substrate binding domain
APE_1180	PF16363	APE_1180
APE_1181	PF00483	Nucleotidyl transferase
APE_1182	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
APE_1183	PF08241	Methyltransferase domain
APE_1184	PF00535	Glycosyl transferase family 2
APE_1186.1	PF00534	Glycosyl transferases group 1
APE_1188	PF00534	Glycosyl transferases group 1
APE_1189.1	PF00535	Glycosyl transferase family 2
APE_1190.1	PF05050	Methyltransferase FkbM domain
APE_1191	PF00534	Glycosyl transferases group 1
APE_1191	PF13439	Glycosyltransferase Family 4
APE_1192	PF00535	Glycosyl transferase family 2
APE_1195.1	PF01583	Adenylylsulphate kinase
APE_1196.1	PF01925	APE_1196.1
APE_1197.1	PF01747	ATP-sulfurylase
APE_1197.1	PF14306	PUA-like domain
APE_1199	PF01663	Type I phosphodiesterase / nucleotide pyrophosphatase
APE_1202.1	PF00132	Bacterial transferase hexapeptide (six repeats)
APE_1202.1	PF00483	Nucleotidyl transferase
APE_1205.1	PF01380	SIS domain
APE_1205.1	PF13522	Glutamine amidotransferase domain
APE_1208.1	PF00132	Bacterial transferase hexapeptide (six repeats)
APE_1208.1	PF12804	MobA-like NTP transferase domain
APE_1209a	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
APE_1209b	PF01850	PIN domain
APE_1209c.1	PF01954	Protein of unknown function DUF104
APE_1209e	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_1213.1	PF00082	Subtilase family
APE_1216	PF15619	APE_1216
APE_1221	PF07788	APE_1221
APE_1221	PF12644	APE_1221
APE_1223.1	PF00291	Pyridoxal-phosphate dependent enzyme
APE_1226	PF01053	Cys/Met metabolism PLP-dependent enzyme
APE_1228.1	PF10040	Uncharacterized conserved protein (DUF2276)
APE_1230	PF09703	APE_1230
APE_1232	PF00270	DEAD/DEAH box helicase
APE_1232	PF00271	Helicase conserved C-terminal domain
APE_1235	PF01905	CRISPR-associated negative auto-regulator DevR/Csa2
APE_1239.1	PF01930	Domain of unknown function DUF83
APE_1239a	PF09827	CRISPR associated protein Cas2
APE_1240.1	PF01867	CRISPR associated protein Cas1
APE_1241.1	PF06023	APE_1241.1
APE_1244.1	PF12146	Putative lysophospholipase
APE_1245.1	PF00107	Zinc-binding dehydrogenase
APE_1245.1	PF08240	Alcohol dehydrogenase GroES-like domain
APE_1253	PF00005	ABC transporter
APE_1255.1	PF00005	ABC transporter
APE_1257	PF12698	ABC-2 family transporter protein
APE_1258.1	PF01814	Hemerythrin HHE cation binding domain
APE_1260	PF00753	Metallo-beta-lactamase superfamily
APE_1262	PF01545	Cation efflux family
APE_1265.1	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
APE_1265.1	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
APE_1267.1	PF01266	FAD dependent oxidoreductase
APE_1270.1	PF01909	Nucleotidyltransferase domain
APE_1272.1	PF05168	HEPN domain
APE_1273.1	PF01729	Quinolinate phosphoribosyl transferase, C-terminal domain
APE_1273.1	PF02749	Quinolinate phosphoribosyl transferase, N-terminal domain
APE_1275	PF01212	Beta-eliminating lyase
APE_1279.1	PF01872	RibD C-terminal domain
APE_1285.1	PF00850	Histone deacetylase domain
APE_1288.1	PF00384	Molybdopterin oxidoreductase
APE_1288.1	PF01568	Molydopterin dinucleotide binding domain
APE_1294.1	PF13247	4Fe-4S dicluster domain
APE_1294.1	PF14711	Respiratory nitrate reductase beta C-terminal
APE_1297	PF09459	Ethylbenzene dehydrogenase
APE_1300.1	PF02613	Nitrate reductase delta subunit
APE_1301.1	PF00005	ABC transporter
APE_1303.1	PF13458	Periplasmic binding protein
APE_1304.1	PF02653	APE_1304.1
APE_1305	PF02653	APE_1305
APE_1307	PF00501	AMP-binding enzyme
APE_1308	PF00005	ABC transporter
APE_1308	PF12399	Branched-chain amino acid ATP-binding cassette transporter
APE_1310	PF00501	AMP-binding enzyme
APE_1310	PF13193	AMP-binding enzyme C-terminal domain
APE_1313.1	PF13559	APE_1313.1
APE_1317	PF07726	ATPase family associated with various cellular activities (AAA)
APE_1319.1	PF01882	APE_1319.1
APE_1323.1	PF01336	OB-fold nucleic acid binding domain
APE_1324	PF00583	Acetyltransferase (GNAT) family
APE_1328.1	PF01968	Hydantoinase/oxoprolinase
APE_1328.1	PF05378	APE_1328.1
APE_1331	PF02538	APE_1331
APE_1333	PF03992	Antibiotic biosynthesis monooxygenase
APE_1335.1	PF05343	M42 glutamyl aminopeptidase
APE_1336.1	PF01593	Flavin containing amine oxidoreductase
APE_1340.1	PF00270	DEAD/DEAH box helicase
APE_1340.1	PF01131	DNA topoisomerase
APE_1340.1	PF01751	Toprim domain
APE_1343	PF00795	Carbon-nitrogen hydrolase
APE_1345	PF00892	EamA-like transporter family
APE_1346.1	PF00501	AMP-binding enzyme
APE_1346.1	PF13193	AMP-binding enzyme C-terminal domain
APE_1346.1	PF16177	APE_1346.1
APE_1350.1	PF01967	MoaC family
APE_1353.1	PF00270	DEAD/DEAH box helicase
APE_1353.1	PF00271	Helicase conserved C-terminal domain
APE_1360.1	PF03551	Transcriptional regulator PadR-like family
APE_1361.1	PF13561	Enoyl-(Acyl carrier protein) reductase
APE_1363.1	PF04252	APE_1363.1
APE_1365.1	PF05165	GGDN family
APE_1366.1	PF00885	6,7-dimethyl-8-ribityllumazine synthase
APE_1367	PF00004	ATPase family associated with various cellular activities (AAA)
APE_1367	PF02359	Cell division protein 48 (CDC48), N-terminal domain
APE_1367	PF02933	Cell division protein 48 (CDC48), domain 2
APE_1367	PF09336	Vps4 C terminal oligomerisation domain
APE_1373	PF02308	APE_1373
APE_1373	PF13194	APE_1373
APE_1376.1	PF00270	DEAD/DEAH box helicase
APE_1376.1	PF01131	DNA topoisomerase
APE_1376.1	PF01751	Toprim domain
APE_1380.1	PF00005	ABC transporter
APE_1382	PF02133	Permease for cytosine/purines, uracil, thiamine, allantoin
APE_1385	PF01255	Putative undecaprenyl diphosphate synthase
APE_1386.1	PF00208	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
APE_1386.1	PF02812	Glu/Leu/Phe/Val dehydrogenase, dimerisation domain
APE_1388.1	PF06267	Family of unknown function (DUF1028)
APE_1388.1	PF08823	APE_1388.1
APE_1390.1	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
APE_1395.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1396	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1396	PF12911	APE_1396
APE_1399	PF00005	ABC transporter
APE_1399	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_1402.1	PF00005	ABC transporter
APE_1402.1	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_1404.1	PF00275	EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase)
APE_1410.1	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
APE_1411.1	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
APE_1411.1	PF00662	NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus
APE_1415	PF00361	NADH-Ubiquinone/plastoquinone (complex I), various chains
APE_1417.1	PF00420	NADH-ubiquinone/plastoquinone oxidoreductase chain 4L
APE_1418.1	PF00499	NADH-ubiquinone/plastoquinone oxidoreductase chain 6
APE_1419.1	PF12838	4Fe-4S dicluster domain
APE_1421.1	PF00146	NADH dehydrogenase
APE_1422	PF00346	Respiratory-chain NADH dehydrogenase, 49 Kd subunit
APE_1426	PF00329	Respiratory-chain NADH dehydrogenase, 30 Kd subunit
APE_1428.1	PF01058	NADH ubiquinone oxidoreductase, 20 Kd subunit
APE_1432	PF00009	Elongation factor Tu GTP binding domain
APE_1432	PF00679	Elongation factor G C-terminus
APE_1432	PF03144	Elongation factor Tu domain 2
APE_1432	PF03764	Elongation factor G, domain IV
APE_1432	PF14492	Elongation Factor G, domain II
APE_1436.1	PF02732	ERCC4 domain
APE_1436.1	PF14520	Helix-hairpin-helix domain
APE_1437.1	PF01368	DHH family
APE_1437.1	PF02272	DHHA1 domain
APE_1440	PF01920	Prefoldin subunit
APE_1440a	PF09341	Transcription factor Pcc1
APE_1441.1	PF00924	Mechanosensitive ion channel
APE_1442	PF04254	APE_1442
APE_1443a	PF01780	Ribosomal L37ae protein family
APE_1445	PF01138	3' exoribonuclease family, domain 1
APE_1445	PF03725	3' exoribonuclease family, domain 2
APE_1447	PF01138	3' exoribonuclease family, domain 1
APE_1447	PF03725	3' exoribonuclease family, domain 2
APE_1448	PF15985	APE_1448
APE_1449	PF00227	Proteasome subunit
APE_1449	PF10584	Proteasome subunit A N-terminal signature
APE_1450.1	PF01876	RNase P subunit p30
APE_1451.1	PF01877	RNA binding
APE_1452	PF00827	Ribosomal L15
APE_1454.1	PF00122	E1-E2 ATPase
APE_1454.1	PF00403	Heavy-metal-associated domain
APE_1454.1	PF00702	haloacid dehalogenase-like hydrolase
APE_1457	PF00210	Ferritin-like domain
APE_1458	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
APE_1458	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_1458a	PF01037	AsnC family
APE_1458a	PF13404	AsnC-type helix-turn-helix domain
APE_1461.1	PF00696	Amino acid kinase family
APE_1462	PF01118	Semialdehyde dehydrogenase, NAD binding domain
APE_1463	PF08443	RimK-like ATP-grasp domain
APE_1464	PF00202	Aminotransferase class-III
APE_1467.1	PF01546	Peptidase family M20/M25/M40
APE_1467.1	PF07687	Peptidase dimerisation domain
APE_1470.1	PF06508	Queuosine biosynthesis protein QueC
APE_1471.1	PF14489	QueF-like protein
APE_1472	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
APE_1472	PF12367	APE_1472
APE_1473.1	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
APE_1473.1	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
APE_1473.1	PF17147	APE_1473.1
APE_1477	PF03956	APE_1477
APE_1478.1	PF04087	APE_1478.1
APE_1481.1	PF00293	NUDIX domain
APE_1483.1	PF04414	D-aminoacyl-tRNA deacylase
APE_1484.1	PF00378	Enoyl-CoA hydratase/isomerase family
APE_1484.1	PF00725	3-hydroxyacyl-CoA dehydrogenase, C-terminal domain
APE_1484.1	PF02737	3-hydroxyacyl-CoA dehydrogenase, NAD binding domain
APE_1488.1	PF00291	Pyridoxal-phosphate dependent enzyme
APE_1491.1	PF13241	Putative NAD(P)-binding
APE_1493	PF02602	Uroporphyrinogen-III synthase HemD
APE_1495.1	PF00248	Aldo/keto reductase family
APE_1495a	PF01402	Ribbon-helix-helix protein, copG family
APE_1498.1	PF00291	Pyridoxal-phosphate dependent enzyme
APE_1501.1	PF01042	Endoribonuclease L-PSP
APE_1503.1	PF13649	Methyltransferase domain
APE_1505.1	PF06745	KaiC
APE_1507.1	PF00478	IMP dehydrogenase / GMP reductase domain
APE_1509.1	PF03479	Domain of unknown function (DUF296)
APE_1510.1	PF00571	CBS domain
APE_1512	PF08544	GHMP kinases C terminal
APE_1514.1	PF12804	MobA-like NTP transferase domain
APE_1516.1	PF01066	CDP-alcohol phosphatidyltransferase
APE_1517	PF01658	Myo-inositol-1-phosphate synthase
APE_1520.1	PF01894	Uncharacterised protein family UPF0047
APE_1522.1	PF00004	ATPase family associated with various cellular activities (AAA)
APE_1522.1	PF08542	Replication factor C C-terminal domain
APE_1524.1	PF00004	ATPase family associated with various cellular activities (AAA)
APE_1524.1	PF03215	Rad17 cell cycle checkpoint protein
APE_1526.1	PF01066	CDP-alcohol phosphatidyltransferase
APE_1528.1	PF13692	Glycosyl transferases group 1
APE_1529.1	PF04930	APE_1529.1
APE_1530.1	PF00919	Uncharacterized protein family UPF0004
APE_1530.1	PF01938	TRAM domain
APE_1530.1	PF04055	Radical SAM superfamily
APE_1533.1	PF01873	Domain found in IF2B/IF5
APE_1535.1	PF04055	Radical SAM superfamily
APE_1535.1	PF13353	4Fe-4S single cluster domain
APE_1538.1	PF00121	Triosephosphate isomerase
APE_1538.1	PF05690	Thiazole biosynthesis protein ThiG
APE_1543	PF05127	Helicase
APE_1543	PF13673	Acetyltransferase (GNAT) domain
APE_1543	PF13718	GNAT acetyltransferase 2
APE_1545.1	PF06195	APE_1545.1
APE_1547.1	PF00326	Prolyl oligopeptidase family
APE_1548.1	PF00005	ABC transporter
APE_1550.1	PF12698	ABC-2 family transporter protein
APE_1552	PF00571	CBS domain
APE_1552	PF00654	Voltage gated chloride channel
APE_1555.1	PF00654	Voltage gated chloride channel
APE_1557.1	PF00107	Zinc-binding dehydrogenase
APE_1557.1	PF08240	Alcohol dehydrogenase GroES-like domain
APE_1558	PF14338	APE_1558
APE_1558b	PF05016	Plasmid stabilisation system protein
APE_1559.1	PF00753	Metallo-beta-lactamase superfamily
APE_1559a	PF09360	Iron-binding zinc finger CDGSH type
APE_1564.1	PF08745	UPF0278 family
APE_1567.1	PF09414	RNA ligase
APE_1570	PF01040	UbiA prenyltransferase family
APE_1571.1	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
APE_1576	PF00005	ABC transporter
APE_1576	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_1578	PF00005	ABC transporter
APE_1578	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_1581.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1582	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1583.1	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
APE_1586	PF00291	Pyridoxal-phosphate dependent enzyme
APE_1586a	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_1588	PF01850	PIN domain
APE_1588a	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
APE_1588b	PF01326	Pyruvate phosphate dikinase, PEP/pyruvate binding domain
APE_1591.1	PF00708	Acylphosphatase
APE_1592.1	PF01406	tRNA synthetases class I (C) catalytic domain
APE_1594	PF00899	ThiF family
APE_1596	PF01941	S-adenosylmethionine synthetase (AdoMet synthetase)
APE_1599.1	PF04312	APE_1599.1
APE_1602.1	PF01163	RIO1 family
APE_1602.1	PF09202	Rio2, N-terminal
APE_1602a	PF01022	Bacterial regulatory protein, arsR family
APE_1604	PF00117	Glutamine amidotransferase class-I
APE_1604	PF06418	CTP synthase N-terminus
APE_1605.1	PF13242	HAD-hyrolase-like
APE_1605.1	PF13344	Haloacid dehalogenase-like hydrolase
APE_1611	PF05670	APE_1611
APE_1611	PF05833	Fibronectin-binding protein A N-terminus (FbpA)
APE_1615	PF01545	Cation efflux family
APE_1616.1	PF01676	Metalloenzyme superfamily
APE_1616.1	PF10143	2,3-bisphosphoglycerate-independent phosphoglycerate mutase
APE_1618.1	PF00330	Aconitase family (aconitate hydratase)
APE_1618.1	PF00694	Aconitase C-terminal domain
APE_1622.1	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_1623	PF00115	Cytochrome C and Quinol oxidase polypeptide I
APE_1627	PF06557	Protein of unknown function (DUF1122)
APE_1629	PF01253	Translation initiation factor SUI1
APE_1630.1	PF01547	Bacterial extracellular solute-binding protein
APE_1633	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1635.1	PF00005	ABC transporter
APE_1635.1	PF08402	TOBE domain
APE_1637.1	PF00491	Arginase family
APE_1639	PF03129	Anticodon binding domain
APE_1646.1	PF01974	tRNA intron endonuclease, catalytic C-terminal domain
APE_1646.1	PF02778	tRNA intron endonuclease, N-terminal domain
APE_1647	PF02441	Flavoprotein
APE_1648.1	PF01661	Macro domain
APE_1649.1	PF16575	APE_1649.1
APE_1652	PF04055	Radical SAM superfamily
APE_1652	PF13186	Iron-sulfur cluster-binding domain
APE_1652	PF13353	4Fe-4S single cluster domain
APE_1655	PF04055	Radical SAM superfamily
APE_1655	PF13186	Iron-sulfur cluster-binding domain
APE_1655	PF13353	4Fe-4S single cluster domain
APE_1657.1	PF00596	Class II Aldolase and Adducin N-terminal domain
APE_1659	PF00248	Aldo/keto reductase family
APE_1660.1	PF13380	CoA binding domain
APE_1661	PF01981	Peptidyl-tRNA hydrolase PTH2
APE_1662.1	PF01948	Aspartate carbamoyltransferase regulatory chain, allosteric domain
APE_1662.1	PF02748	Aspartate carbamoyltransferase regulatory chain, metal binding domain
APE_1663.1	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
APE_1663.1	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
APE_1666	PF01966	HD domain
APE_1668	PF03091	CutA1 divalent ion tolerance protein
APE_1669.1	PF02852	Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain
APE_1669.1	PF07992	Pyridine nucleotide-disulphide oxidoreductase
APE_1671	PF00198	2-oxoacid dehydrogenases acyltransferase (catalytic domain)
APE_1671	PF00364	Biotin-requiring enzyme
APE_1671	PF02817	e3 binding domain
APE_1674	PF02779	Transketolase, pyrimidine binding domain
APE_1674	PF02780	Transketolase, C-terminal domain
APE_1677.1	PF00676	Dehydrogenase E1 component
APE_1681.1	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_1681.1	PF02770	Acyl-CoA dehydrogenase, middle domain
APE_1681.1	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
APE_1683.1	PF03308	ArgK protein
APE_1686.1	PF02310	B12 binding domain
APE_1687	PF01642	Methylmalonyl-CoA mutase
APE_1688.1	PF01497	Periplasmic binding protein
APE_1690.1	PF03745	Domain of unknown function (DUF309)
APE_1691	PF02535	APE_1691
APE_1692.1	PF00719	Inorganic pyrophosphatase
APE_1694.1	PF02628	APE_1694.1
APE_1695.1	PF01571	Aminomethyltransferase folate-binding domain
APE_1695.1	PF08669	Glycine cleavage T-protein C-terminal barrel domain
APE_1699	PF10061	Uncharacterized conserved protein (DUF2299)
APE_1702	PF00005	ABC transporter
APE_1703	PF01458	Uncharacterized protein family (UPF0051)
APE_1706	PF01458	Uncharacterized protein family (UPF0051)
APE_1711	PF13412	Winged helix-turn-helix DNA-binding
APE_1713	PF00285	Citrate synthase
APE_1715.1	PF01874	ATP:dephospho-CoA triphosphoribosyl transferase
APE_1717.1	PF01425	Amidase
APE_1718	PF02637	GatB domain
APE_1718	PF02934	GatB/GatE catalytic domain
APE_1720	PF00116	Cytochrome C oxidase subunit II, periplasmic domain
APE_1722	PF00085	Thioredoxin
APE_1722a	PF04314	Protein of unknown function (DUF461)
APE_1723.1	PF01596	O-methyltransferase
APE_1724.1	PF00355	Rieske [2Fe-2S] domain
APE_1725	PF13631	Cytochrome b(N-terminal)/b6/petB
APE_1727.1	PF07884	Vitamin K epoxide reductase family
APE_1728	PF01547	Bacterial extracellular solute-binding protein
APE_1730.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1732	PF00005	ABC transporter
APE_1732	PF08402	TOBE domain
APE_1735	PF00448	SRP54-type protein, GTPase domain
APE_1735	PF02881	SRP54-type protein, helical bundle domain
APE_1735	PF02978	Signal peptide binding domain
APE_1737.1	PF00416	Ribosomal protein S13/S18
APE_1739.1	PF00163	Ribosomal protein S4/S9 N-terminal domain
APE_1739.1	PF01479	S4 domain
APE_1742.1	PF00411	Ribosomal protein S11
APE_1744.1	PF01000	RNA polymerase Rpb3/RpoA insert domain
APE_1744.1	PF01193	RNA polymerase Rpb3/Rpb11 dimerisation domain
APE_1746	PF17135	APE_1746
APE_1747	PF00572	Ribosomal protein L13
APE_1749	PF00380	Ribosomal protein S9/S16
APE_1749a	PF01194	RNA polymerases N / 8 kDa subunit
APE_1750	PF00318	Ribosomal protein S2
APE_1751	PF01877	RNA binding
APE_1753.1	PF13207	AAA domain
APE_1754.1	PF00266	Aminotransferase class-V
APE_1756	PF00750	tRNA synthetases class I (R)
APE_1756	PF05746	DALR anticodon binding domain
APE_1758.1	PF01139	tRNA-splicing ligase RtcB
APE_1761.1	PF01928	CYTH domain
APE_1763	PF09891	Uncharacterized protein conserved in archaea (DUF2118)
APE_1764.1	PF00348	Polyprenyl synthetase
APE_1765.1	PF01070	FMN-dependent dehydrogenase
APE_1768.1	PF00696	Amino acid kinase family
APE_1771	PF01875	Memo-like protein
APE_1773.1	PF01554	MatE
APE_1775.1	PF02074	Carboxypeptidase Taq (M32) metallopeptidase
APE_1782.1	PF02146	Sir2 family
APE_1786.1	PF00171	Aldehyde dehydrogenase family
APE_1791.1	PF01909	Nucleotidyltransferase domain
APE_1791.1	PF09249	tRNA nucleotidyltransferase, second domain
APE_1792	PF02834	LigT like Phosphoesterase
APE_1794	PF01131	DNA topoisomerase
APE_1794	PF01751	Toprim domain
APE_1796.1	PF00717	Peptidase S24-like
APE_1797	PF03483	B3/4 domain
APE_1798.1	PF00459	Inositol monophosphatase family
APE_1799a	PF01037	AsnC family
APE_1800.1	PF03463	eRF1 domain 1
APE_1800.1	PF03465	eRF1 domain 3
APE_1805.1	PF00133	tRNA synthetases class I (I, L, M and V)
APE_1805.1	PF08264	Anticodon-binding domain of tRNA
APE_1808	PF04307	APE_1808
APE_1810	PF09818	Predicted ATPase of the ABC class
APE_1814.1	PF02915	Rubrerythrin
APE_1816.1	PF00206	Lyase
APE_1816.1	PF10415	Fumarase C C-terminus
APE_1817.1	PF10051	APE_1817.1
APE_1818	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
APE_1819	PF01142	tRNA pseudouridine synthase D (TruD)
APE_1820	PF12831	FAD dependent oxidoreductase
APE_1823	PF01918	Alba
APE_1824	PF05559	APE_1824
APE_1825.1	PF01513	ATP-NAD kinase
APE_1827.1	PF01061	APE_1827.1
APE_1828.1	PF01061	APE_1828.1
APE_1829	PF00005	ABC transporter
APE_1831.1	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
APE_1831.1	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
APE_1832	PF00326	Prolyl oligopeptidase family
APE_1832	PF07676	WD40-like Beta Propeller Repeat
APE_1832a.1	PF01918	Alba
APE_1834.1	PF00156	Phosphoribosyl transferase domain
APE_1834.1	PF13793	N-terminal domain of ribose phosphate pyrophosphokinase
APE_1835	PF01170	Putative RNA methylase family UPF0020
APE_1836.1	PF12706	Beta-lactamase superfamily domain
APE_1838.1	PF00571	CBS domain
APE_1842	PF00338	Ribosomal protein S10p/S20e
APE_1844	PF00009	Elongation factor Tu GTP binding domain
APE_1844	PF03143	Elongation factor Tu C-terminal domain
APE_1844	PF03144	Elongation factor Tu domain 2
APE_1846.1	PF00177	Ribosomal protein S7p/S5e
APE_1848.1	PF02577	Bifunctional nuclease
APE_1849	PF00164	Ribosomal protein S12/S23
APE_1850	PF07650	KH domain
APE_1851.1	PF01248	Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
APE_1852.1	PF04998	RNA polymerase Rpb1, domain 5
APE_1853.1	PF00623	RNA polymerase Rpb1, domain 2
APE_1853.1	PF04983	RNA polymerase Rpb1, domain 3
APE_1853.1	PF04997	RNA polymerase Rpb1, domain 1
APE_1853.1	PF04998	RNA polymerase Rpb1, domain 5
APE_1853.1	PF05000	RNA polymerase Rpb1, domain 4
APE_1856	PF00562	RNA polymerase Rpb2, domain 6
APE_1856	PF04560	RNA polymerase Rpb2, domain 7
APE_1856	PF04561	RNA polymerase Rpb2, domain 2
APE_1856	PF04563	RNA polymerase beta subunit
APE_1856	PF04565	RNA polymerase Rpb2, domain 3
APE_1856	PF04566	RNA polymerase Rpb2, domain 4
APE_1856	PF04567	RNA polymerase Rpb2, domain 5
APE_1856a	PF01191	RNA polymerase Rpb5, C-terminal domain
APE_1861.1	PF00149	Calcineurin-like phosphoesterase
APE_1862.1	PF00352	Transcription factor TFIID (or TATA-binding protein, TBP)
APE_1865.1	PF04055	Radical SAM superfamily
APE_1866.1	PF10015	Uncharacterized protein conserved in archaea (DUF2258)
APE_1867.1	PF00924	Mechanosensitive ion channel
APE_1868.1	PF04254	APE_1868.1
APE_1869	PF00368	Hydroxymethylglutaryl-coenzyme A reductase
APE_1871.1	PF01796	APE_1871.1
APE_1871.1	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
APE_1872.1	PF00108	Thiolase, N-terminal domain
APE_1873.1	PF08541	3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal
APE_1874.1	PF04055	Radical SAM superfamily
APE_1877.1	PF01694	Rhomboid family
APE_1878	PF01040	UbiA prenyltransferase family
APE_1885	PF01048	Phosphorylase superfamily
APE_1889	PF08241	Methyltransferase domain
APE_1891.1	PF00005	ABC transporter
APE_1892	PF00528	Binding-protein-dependent transport system inner membrane component
APE_1893.1	PF00497	Bacterial extracellular solute-binding proteins, family 3
APE_1894	PF13840	ACT domain
APE_1895.1	PF00482	Type II secretion system (T2SS), protein F
APE_1896.1	PF00437	Type II/IV secretion system protein
APE_1898	PF06745	KaiC
APE_1901	PF01917	APE_1901
APE_1905	PF01917	APE_1905
APE_1907	PF01917	APE_1907
APE_1911.1	PF00005	ABC transporter
APE_1914.1	PF07690	Major Facilitator Superfamily
APE_1917	PF01546	Peptidase family M20/M25/M40
APE_1921	PF00961	LAGLIDADG endonuclease
APE_1929.1	PF14528	LAGLIDADG-like domain
APE_1932.1	PF12698	ABC-2 family transporter protein
APE_1934.1	PF00005	ABC transporter
APE_1937.1	PF02006	Protein of unknown function DUF137
APE_1940.1	PF01380	SIS domain
APE_1949.1	PF03367	ZPR1 zinc-finger domain
APE_1950.1	PF00011	Hsp20/alpha crystallin family
APE_1954	PF00583	Acetyltransferase (GNAT) family
APE_1958.1	PF02540	NAD synthase
APE_1959.1	PF02441	Flavoprotein
APE_1959.1	PF04127	DNA / pantothenate metabolism flavoprotein
APE_1961	PF00248	Aldo/keto reductase family
APE_1962.1	PF00464	Serine hydroxymethyltransferase
APE_1963.1	PF00465	Iron-containing alcohol dehydrogenase
APE_1964.1	PF02036	SCP-2 sterol transfer family
APE_1968	PF00696	Amino acid kinase family
APE_1971.1	PF02492	CobW/HypB/UreG, nucleotide-binding domain
APE_1976.1	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
APE_1976.1	PF02403	Seryl-tRNA synthetase N-terminal domain
APE_1979.1	PF01883	Domain of unknown function DUF59
APE_1980.1	PF00994	Probable molybdopterin binding domain
APE_1984.1	PF08445	FR47-like protein
APE_1986.1	PF01467	Cytidylyltransferase
APE_1988.1	PF03464	eRF1 domain 2
APE_1988.1	PF03465	eRF1 domain 3
APE_1992.1	PF00185	Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain
APE_1992.1	PF02729	Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain
APE_1998	PF04894	APE_1998
APE_1998	PF04895	APE_1998
APE_2001.1	PF09895	APE_2001.1
APE_2002	PF00145	C-5 cytosine-specific DNA methylase
APE_2004.1	PF02002	TFIIE alpha subunit
APE_2004.1	PF08271	TFIIB zinc-binding
APE_2006.1	PF01994	tRNA ribose 2'-O-methyltransferase, aTrm56
APE_2007	PF01926	50S ribosome-binding GTPase
APE_2007	PF13167	APE_2007
APE_2007	PF16360	APE_2007
APE_2011.1	PF01381	Helix-turn-helix
APE_2012	PF00004	ATPase family associated with various cellular activities (AAA)
APE_2015.1	PF16992	APE_2015.1
APE_2017	PF01702	Queuine tRNA-ribosyltransferase
APE_2018.1	PF09754	PAC2 family
APE_2020	PF14810	Patch-forming domain C2 of tRNA-guanine transglycosylase
APE_2021.1	PF01475	Ferric uptake regulator family
APE_2023	PF00266	Aminotransferase class-V
APE_2029.1	PF02277	Phosphoribosyltransferase
APE_2032.1	PF01955	APE_2032.1
APE_2034.1	PF12804	MobA-like NTP transferase domain
APE_2035.1	PF00155	Aminotransferase class I and II
APE_2037.1	PF02654	APE_2037.1
APE_2039.1	PF03186	APE_2039.1
APE_2041.1	PF00733	Asparagine synthase
APE_2042.1	PF01902	ATP-binding region
APE_2044.1	PF00586	AIR synthase related protein, N-terminal domain
APE_2044.1	PF02769	AIR synthase related protein, C-terminal domain
APE_2048	PF01717	Cobalamin-independent synthase, Catalytic domain
APE_2050.1	PF08267	Cobalamin-independent synthase, N-terminal domain
APE_2052.1	PF01926	50S ribosome-binding GTPase
APE_2052.1	PF02824	TGS domain
APE_2052.1	PF16897	APE_2052.1
APE_2055.1	PF00795	Carbon-nitrogen hydrolase
APE_2056.1	PF00293	NUDIX domain
APE_2060.1	PF00005	ABC transporter
APE_2062.1	PF00317	Ribonucleotide reductase, all-alpha domain
APE_2062.1	PF02867	Ribonucleotide reductase, barrel domain
APE_2064.1	PF02511	Thymidylate synthase complementing protein
APE_2066.1	PF00534	Glycosyl transferases group 1
APE_2066.1	PF13439	Glycosyltransferase Family 4
APE_2067.1	PF00288	GHMP kinases N terminal domain
APE_2067.1	PF08544	GHMP kinases C terminal
APE_2068	PF01053	Cys/Met metabolism PLP-dependent enzyme
APE_2071.1	PF00156	Phosphoribosyl transferase domain
APE_2071a	PF00833	Ribosomal S17
APE_2072.1	PF00118	TCP-1/cpn60 chaperonin family
APE_2074.1	PF00579	tRNA synthetases class I (W and Y)
APE_2075	PF01507	Phosphoadenosine phosphosulfate reductase family
APE_2078	PF01977	3-octaprenyl-4-hydroxybenzoate carboxy-lyase
APE_2080.1	PF00293	NUDIX domain
APE_2081.1	PF02073	Thermophilic metalloprotease (M29)
APE_2084.1	PF01895	PhoU domain
APE_2084.1	PF04014	Antidote-toxin recognition MazE
APE_2085.1	PF01287	Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold
APE_2085.1	PF08207	Elongation factor P (EF-P) KOW-like domain
APE_2086	PF01171	PP-loop family
APE_2087.1	PF04412	APE_2087.1
APE_2089	PF01989	Protein of unknown function DUF126
APE_2090	PF02223	Thymidylate kinase
APE_2091.1	PF00480	ROK family
APE_2093	PF01935	Domain of unknown function DUF87
APE_2094.1	PF13238	AAA domain
APE_2096.1	PF13662	Toprim domain
APE_2098.1	PF00136	DNA polymerase family B
APE_2098.1	PF03104	DNA polymerase family B, exonuclease domain
APE_2104.1	PF01261	Xylose isomerase-like TIM barrel
APE_2105.1	PF01048	Phosphorylase superfamily
APE_2106.1	PF00294	pfkB family carbohydrate kinase
APE_2108	PF00108	Thiolase, N-terminal domain
APE_2108	PF02803	Thiolase, C-terminal domain
APE_2109	PF02310	B12 binding domain
APE_2109	PF04055	Radical SAM superfamily
APE_2110	PF02592	APE_2110
APE_2112.1	PF01982	Domain of unknown function DUF120
APE_2115.1	PF01979	Amidohydrolase family
APE_2124.1	PF02347	Glycine cleavage system P-protein
APE_2125.1	PF00578	AhpC/TSA family
APE_2126.1	PF01558	Pyruvate ferredoxin/flavodoxin oxidoreductase
APE_2126.1	PF01855	Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg
APE_2126.1	PF17147	APE_2126.1
APE_2128	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
APE_2128	PF12367	APE_2128
APE_2129.1	PF08905	APE_2129.1
APE_2130.1	PF00202	Aminotransferase class-III
APE_2133	PF06808	APE_2133
APE_2136.1	PF16868	APE_2136.1
APE_2139.1	PF01987	Mitochondrial biogenesis AIM24
APE_2139a	PF02416	mttA/Hcf106 family
APE_2142.1	PF00120	Glutamine synthetase, catalytic domain
APE_2142.1	PF03951	Glutamine synthetase, beta-Grasp domain
APE_2144.1	PF00270	DEAD/DEAH box helicase
APE_2144.1	PF00271	Helicase conserved C-terminal domain
APE_2144.1	PF08494	APE_2144.1
APE_2147.1	PF03972	MmgE/PrpD family
APE_2149.1	PF01946	Thi4 family
APE_2151.1	PF01957	NfeD-like C-terminal, partner-binding
APE_2153.1	PF01145	SPFH domain / Band 7 family
APE_2154.1	PF00902	Sec-independent protein translocase protein (TatC)
APE_2154a	PF02416	mttA/Hcf106 family
APE_2155.1	PF02361	Cobalt transport protein
APE_2156.1	PF00753	Metallo-beta-lactamase superfamily
APE_2158.1	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_2158.1	PF02770	Acyl-CoA dehydrogenase, middle domain
APE_2158.1	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
APE_2161	PF07969	Amidohydrolase family
APE_2162.1	PF02554	APE_2162.1
APE_2162.1	PF13722	APE_2162.1
APE_2164.1	PF02374	Anion-transporting ATPase
APE_2165	PF02374	Anion-transporting ATPase
APE_2166	PF01411	tRNA synthetases class II (A)
APE_2166	PF02272	DHHA1 domain
APE_2166	PF07973	Threonyl and Alanyl tRNA synthetase second additional domain
APE_2170	PF00428	60s Acidic ribosomal protein
APE_2171.1	PF00466	Ribosomal protein L10
APE_2173.1	PF00687	Ribosomal protein L1p/L10e family
APE_2174	PF00298	Ribosomal protein L11, RNA binding domain
APE_2176.1	PF00467	KOW motif
APE_2176.1	PF03439	Early transcription elongation factor of RNA pol II, NGN section
APE_2177.1	PF01927	APE_2177.1
APE_2178.1	PF00571	CBS domain
APE_2180.1	PF01904	Protein of unknown function DUF72
APE_2182	PF00705	Proliferating cell nuclear antigen, N-terminal domain
APE_2188.1	PF00270	DEAD/DEAH box helicase
APE_2188.1	PF00271	Helicase conserved C-terminal domain
APE_2188.1	PF08494	APE_2188.1
APE_2192.1	PF00152	tRNA synthetases class II (D, K and N)
APE_2192.1	PF01336	OB-fold nucleic acid binding domain
APE_2195	PF01886	APE_2195
APE_2196	PF01269	Fibrillarin
APE_2199.1	PF01798	Putative snoRNA binding domain
APE_2199a	PF04758	Ribosomal protein S30
APE_2200	PF00710	Asparaginase
APE_2202	PF02637	GatB domain
APE_2202	PF02934	GatB/GatE catalytic domain
APE_2202	PF02938	GAD domain
APE_2206.1	PF00482	Type II secretion system (T2SS), protein F
APE_2207.1	PF00482	Type II secretion system (T2SS), protein F
APE_2208.1	PF00437	Type II/IV secretion system protein
APE_2211.1	PF02566	OsmC-like protein
APE_2212.1	PF01972	Serine dehydrogenase proteinase
APE_2213	PF00111	2Fe-2S iron-sulfur cluster binding domain
APE_2213	PF01799	[2Fe-2S] binding domain
APE_2216.1	PF01315	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
APE_2216.1	PF02738	Molybdopterin-binding domain of aldehyde dehydrogenase
APE_2219	PF00941	FAD binding domain in molybdopterin dehydrogenase
APE_2219	PF03450	CO dehydrogenase flavoprotein C-terminal domain
APE_2220.1	PF07728	AAA domain (dynein-related subfamily)
APE_2221.1	PF05762	VWA domain containing CoxE-like protein
APE_2223	PF12804	MobA-like NTP transferase domain
APE_2225.1	PF06240	Carbon monoxide dehydrogenase subunit G (CoxG)
APE_2227	PF02625	XdhC and CoxI family
APE_2227	PF13478	XdhC Rossmann domain
APE_2229.1	PF00136	DNA polymerase family B
APE_2239.1	PF00107	Zinc-binding dehydrogenase
APE_2239.1	PF08240	Alcohol dehydrogenase GroES-like domain
APE_2240	PF04909	Amidohydrolase
APE_2242.1	PF01883	Domain of unknown function DUF59
APE_2246.1	PF04343	APE_2246.1
APE_2247	PF02245	Methylpurine-DNA glycosylase (MPG)
APE_2248.1	PF00155	Aminotransferase class I and II
APE_2252.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_2253.1	PF00528	Binding-protein-dependent transport system inner membrane component
APE_2254.1	PF01547	Bacterial extracellular solute-binding protein
APE_2256.1	PF09651	CRISPR-associated protein (Cas_APE2256)
APE_2257	PF00496	Bacterial extracellular solute-binding proteins, family 5 Middle
APE_2258	PF00528	Binding-protein-dependent transport system inner membrane component
APE_2260	PF00528	Binding-protein-dependent transport system inner membrane component
APE_2260	PF12911	APE_2260
APE_2261.1	PF00005	ABC transporter
APE_2261.1	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_2263.1	PF00005	ABC transporter
APE_2263.1	PF08352	Oligopeptide/dipeptide transporter, C-terminal region
APE_2265.1	PF00753	Metallo-beta-lactamase superfamily
APE_2267.1	PF00282	Pyridoxal-dependent decarboxylase conserved domain
APE_2269.1	PF07690	Major Facilitator Superfamily
APE_2272.1	PF00005	ABC transporter
APE_2272.1	PF00583	Acetyltransferase (GNAT) family
APE_2273.1	PF00085	Thioredoxin
APE_2274	PF01578	APE_2274
APE_2277.1	PF00795	Carbon-nitrogen hydrolase
APE_2278	PF00578	AhpC/TSA family
APE_2278	PF10417	C-terminal domain of 1-Cys peroxiredoxin
APE_2279.1	PF05362	Lon protease (S16) C-terminal proteolytic domain
APE_2281.1	PF01467	Cytidylyltransferase
APE_2281.1	PF04010	Protein of unknown function (DUF357)
APE_2283.1	PF12850	Calcineurin-like phosphoesterase superfamily domain
APE_2284.1	PF00501	AMP-binding enzyme
APE_2284.1	PF13193	AMP-binding enzyme C-terminal domain
APE_2284a	PF04945	YHS domain
APE_2286	PF00291	Pyridoxal-phosphate dependent enzyme
APE_2289.1	PF04008	Adenosine specific kinase
APE_2290.1	PF00326	Prolyl oligopeptidase family
APE_2290.1	PF07676	WD40-like Beta Propeller Repeat
APE_2291	PF00483	Nucleotidyl transferase
APE_2295.1	PF12706	Beta-lactamase superfamily domain
APE_2296	PF00745	Glutamyl-tRNAGlu reductase, dimerisation domain
APE_2296	PF01488	Shikimate / quinate 5-dehydrogenase
APE_2296	PF05201	Glutamyl-tRNAGlu reductase, N-terminal domain
APE_2298.1	PF01379	Porphobilinogen deaminase, dipyromethane cofactor binding domain
APE_2298.1	PF03900	Porphobilinogen deaminase, C-terminal domain
APE_2299.1	PF00202	Aminotransferase class-III
APE_2300.1	PF00490	Delta-aminolevulinic acid dehydratase
APE_2302.1	PF01409	tRNA synthetases class II core domain (F)
APE_2305	PF03483	B3/4 domain
APE_2305	PF03484	tRNA synthetase B5 domain
APE_2308	PF02649	Type I GTP cyclohydrolase folE2
APE_2310.1	PF01636	Phosphotransferase enzyme family
APE_2311.1	PF10977	APE_2311.1
APE_2316	PF00291	Pyridoxal-phosphate dependent enzyme
APE_2317.1	PF00749	tRNA synthetases class I (E and Q), catalytic domain
APE_2317.1	PF03950	tRNA synthetases class I (E and Q), anti-codon binding domain
APE_2324.1	PF01247	Ribosomal protein L35Ae
APE_2326.1	PF00137	ATP synthase subunit C
APE_2328	PF00587	tRNA synthetase class II core domain (G, H, P, S and T)
APE_2328	PF03129	Anticodon binding domain
APE_2328	PF09180	Prolyl-tRNA synthetase, C-terminal
APE_2328a	PF01283	Ribosomal protein S26e
APE_2333.1	PF02021	Uncharacterised protein family UPF0102
APE_2334.1	PF04981	APE_2334.1
APE_2336.1	PF04167	Protein of unknown function (DUF402)
APE_2336a	PF03685	Uncharacterised protein family (UPF0147)
APE_2338	PF01887	S-adenosyl-l-methionine hydroxide adenosyltransferase
APE_2341	PF03099	Biotin/lipoate A/B protein ligase family
APE_2342.1	PF03099	Biotin/lipoate A/B protein ligase family
APE_2344.1	PF04055	Radical SAM superfamily
APE_2347.1	PF00364	Biotin-requiring enzyme
APE_2348	PF00215	Orotidine 5'-phosphate decarboxylase / HUMPS family
APE_2349.1	PF00156	Phosphoribosyl transferase domain
APE_2350.1	PF00857	Isochorismatase family
APE_2352.1	PF02754	APE_2352.1
APE_2354	PF00441	Acyl-CoA dehydrogenase, C-terminal domain
APE_2354	PF02770	Acyl-CoA dehydrogenase, middle domain
APE_2354	PF02771	Acyl-CoA dehydrogenase, N-terminal domain
APE_2356.1	PF01957	NfeD-like C-terminal, partner-binding
APE_2359.1	PF13023	HD domain
APE_2361.1	PF12697	Alpha/beta hydrolase family
APE_2362.1	PF01256	Carbohydrate kinase
APE_2362.1	PF03853	YjeF-related protein N-terminus
APE_2365.1	PF04900	Fcf1
APE_2366.1	PF00009	Elongation factor Tu GTP binding domain
APE_2366.1	PF03144	Elongation factor Tu domain 2
APE_2366.1	PF09173	Initiation factor eIF2 gamma, C terminal
APE_2371.1	PF01092	Ribosomal protein S6e
APE_2374	PF00009	Elongation factor Tu GTP binding domain
APE_2374	PF03144	Elongation factor Tu domain 2
APE_2374	PF11987	Translation-initiation factor 2
APE_2374	PF14578	Elongation factor Tu domain 4
APE_2377	PF00334	Nucleoside diphosphate kinase
APE_2379	PF01810	APE_2379
APE_2379a	PF01246	Ribosomal protein L24e
APE_2379b.1	PF01200	Ribosomal protein S28e
APE_2380.1	PF02667	APE_2380.1
APE_2381.1	PF02667	APE_2381.1
APE_2389	PF01796	APE_2389
APE_2389	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
APE_2390.1	PF01796	APE_2390.1
APE_2390.1	PF12172	Rubredoxin-like zinc ribbon domain (DUF35_N)
APE_2392.1	PF05127	Helicase
APE_2392.1	PF08351	Domain of unknown function (DUF1726)
APE_2392.1	PF13718	GNAT acetyltransferase 2
APE_2392.1	PF13725	Possible tRNA binding domain
APE_2397	PF01300	Telomere recombination
APE_2397	PF03481	Putative GTP-binding controlling metal-binding
APE_2400.1	PF08543	Phosphomethylpyrimidine kinase
APE_2400.1	PF10120	Putative aldolase
APE_2406.1	PF00005	ABC transporter
APE_2408.1	PF00005	ABC transporter
APE_2411.1	PF09512	APE_2411.1
APE_2413	PF01022	Bacterial regulatory protein, arsR family
APE_2414.1	PF01554	MatE
APE_2418.1	PF01012	Electron transfer flavoprotein domain
APE_2419	PF00766	Electron transfer flavoprotein FAD-binding domain
APE_2419	PF01012	Electron transfer flavoprotein domain
APE_2421	PF01266	FAD dependent oxidoreductase
APE_2421	PF01946	Thi4 family
APE_2423	PF00266	Aminotransferase class-V
APE_2424	PF01997	Translin family
APE_2425	PF08544	GHMP kinases C terminal
APE_2426.1	PF00999	Sodium/hydrogen exchanger family
APE_2430.1	PF00085	Thioredoxin
APE_2431.1	PF02926	THUMP domain
APE_2433.1	PF00408	Phosphoglucomutase/phosphomannomutase, C-terminal domain
APE_2433.1	PF02878	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I
APE_2433.1	PF02879	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II
APE_2433.1	PF02880	Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III
APE_2435	PF09973	APE_2435
APE_2436	PF01979	Amidohydrolase family
APE_2436a	PF02036	SCP-2 sterol transfer family
APE_2437.1	PF01791	DeoC/LacD family aldolase
APE_2439	PF00288	GHMP kinases N terminal domain
APE_2439	PF08544	GHMP kinases C terminal
APE_2441.1	PF00326	Prolyl oligopeptidase family
APE_2441.1	PF07676	WD40-like Beta Propeller Repeat
APE_2443.1	PF00382	Transcription factor TFIIB repeat
APE_2446	PF05167	Uncharacterised ACR (DUF711)
APE_2447	PF05425	APE_2447
APE_2448	PF03437	BtpA family
APE_2450.1	PF00883	Cytosol aminopeptidase family, catalytic domain
APE_2450.1	PF02789	Cytosol aminopeptidase family, N-terminal domain
APE_2452	PF00117	Glutamine amidotransferase class-I
APE_2452	PF00958	GMP synthase C terminal domain
APE_2452	PF02540	NAD synthase
APE_2455.1	PF00924	Mechanosensitive ion channel
APE_2456.1	PF02254	TrkA-N domain
APE_2458	PF00113	Enolase, C-terminal TIM barrel domain
APE_2458	PF03952	Enolase, N-terminal domain
APE_2460.1	PF05187	Electron transfer flavoprotein-ubiquinone oxidoreductase
APE_2461.1	PF00579	tRNA synthetases class I (W and Y)
APE_2462.1	PF07884	Vitamin K epoxide reductase family
APE_2464.1	PF02562	PhoH-like protein
APE_2464.1	PF07650	KH domain
APE_2465.1	PF01189	NOL1/NOP2/sun family
APE_2466	PF07690	Major Facilitator Superfamily
APE_2468.1	PF01144	Coenzyme A transferase
APE_2470	PF03297	S25 ribosomal protein
APE_2473.1	PF00149	Calcineurin-like phosphoesterase
APE_2474.1	PF00004	ATPase family associated with various cellular activities (AAA)
APE_2474.1	PF02359	Cell division protein 48 (CDC48), N-terminal domain
APE_2474.1	PF02933	Cell division protein 48 (CDC48), domain 2
APE_2474.1	PF09336	Vps4 C terminal oligomerisation domain
APE_2480.1	PF00736	EF-1 guanine nucleotide exchange domain
APE_2480a	PF07754	APE_2480a
APE_2481.1	PF07318	APE_2481.1
APE_2484.1	PF00300	Histidine phosphatase superfamily (branch 1)
APE_2485.1	PF01944	APE_2485.1
APE_2486.1	PF08704	tRNA methyltransferase complex GCD14 subunit
APE_2489.1	PF00571	CBS domain
APE_2490.1	PF03239	APE_2490.1
APE_2493.1	PF04055	Radical SAM superfamily
APE_2495.1	PF01230	HIT domain
APE_2496.1	PF00085	Thioredoxin
APE_2497	PF01914	APE_2497
APE_2499.1	PF03061	Thioesterase superfamily
APE_2500.1	PF03176	MMPL family
APE_2502.1	PF04909	Amidohydrolase
APE_2503.1	PF13561	Enoyl-(Acyl carrier protein) reductase
APE_2505	PF01978	Sugar-specific transcriptional regulator TrmB
APE_2507.1	PF00389	D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain
APE_2507.1	PF02826	D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain
APE_2509	PF00205	Thiamine pyrophosphate enzyme, central domain
APE_2509	PF02775	Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
APE_2509	PF02776	Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
APE_2512	PF01061	APE_2512
APE_2514	PF01061	APE_2514
APE_2516	PF00005	ABC transporter
APE_2516	PF13732	APE_2516
APE_2517.1	PF01638	HxlR-like helix-turn-helix
APE_2519.1	PF00903	Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily
APE_2520.1	PF01177	Asp/Glu/Hydantoin racemase
APE_2521.1	PF13458	Periplasmic binding protein
APE_2522.1	PF02653	APE_2522.1
APE_2523.1	PF02653	APE_2523.1
APE_2524.1	PF00005	ABC transporter
APE_2524.1	PF12399	Branched-chain amino acid ATP-binding cassette transporter
APE_2526	PF00005	ABC transporter
APE_2528.1	PF01968	Hydantoinase/oxoprolinase
APE_2528.1	PF05378	APE_2528.1
APE_2530.1	PF02538	APE_2530.1
APE_2533.1	PF03190	Protein of unknown function, DUF255
APE_2535.1	PF06197	APE_2535.1
APE_2537.1	PF00892	EamA-like transporter family
APE_2538	PF03553	APE_2538
APE_2540.1	PF04073	Aminoacyl-tRNA editing domain
APE_2542.1	PF06808	APE_2542.1
APE_2545.1	PF16868	APE_2545.1
APE_2546	PF00218	Indole-3-glycerol phosphate synthase
APE_2547	PF00697	N-(5'phosphoribosyl)anthranilate (PRA) isomerase
APE_2548	PF00291	Pyridoxal-phosphate dependent enzyme
APE_2550	PF00290	Tryptophan synthase alpha chain
APE_2551	PF00591	Glycosyl transferase family, a/b domain
APE_2551	PF02885	Glycosyl transferase family, helical bundle domain
APE_2553.1	PF00425	chorismate binding enzyme
APE_2555	PF00117	Glutamine amidotransferase class-I
APE_2556.1	PF00384	Molybdopterin oxidoreductase
APE_2556.1	PF01568	Molydopterin dinucleotide binding domain
APE_2563	PF00355	Rieske [2Fe-2S] domain
APE_2565.1	PF13412	Winged helix-turn-helix DNA-binding
APE_2568.1	PF00578	AhpC/TSA family
APE_2570.1	PF01402	Ribbon-helix-helix protein, copG family
APE_2570.1	PF08753	NikR C terminal nickel binding domain
APE_2571.1	PF00122	E1-E2 ATPase
APE_2571.1	PF00702	haloacid dehalogenase-like hydrolase
APE_2575	PF00155	Aminotransferase class I and II
APE_2577.1	PF04055	Radical SAM superfamily
APE_2578	PF01061	APE_2578
APE_2579.1	PF00005	ABC transporter
APE_2579.1	PF13732	APE_2579.1
APE_2580	PF01613	Flavin reductase like domain
APE_2583.1	PF00375	Sodium:dicarboxylate symporter family
APE_2585	PF00753	Metallo-beta-lactamase superfamily
APE_2586.1	PF02653	APE_2586.1
APE_2587.1	PF02653	APE_2587.1
APE_2588	PF00005	ABC transporter
APE_2592.1	PF02608	Basic membrane protein
APE_2595.1	PF00581	Rhodanese-like domain
APE_2598	PF04055	Radical SAM superfamily
APE_2598	PF13394	4Fe-4S single cluster domain
APE_2601.1	PF02274	Amidinotransferase
APE_2604	PF00501	AMP-binding enzyme
APE_2604	PF13193	AMP-binding enzyme C-terminal domain
APE_2604a.1	PF00501	AMP-binding enzyme
APE_2604a.1	PF16177	APE_2604a.1
APE_2605.1	PF13247	4Fe-4S dicluster domain
APE_2607	PF03916	APE_2607
APE_2610	PF00384	Molybdopterin oxidoreductase
APE_2610	PF01568	Molydopterin dinucleotide binding domain
APE_2612.1	PF02613	Nitrate reductase delta subunit
APE_2615.1	PF07690	Major Facilitator Superfamily
APE_2616	PF01850	PIN domain
APE_2616a	PF01954	Protein of unknown function DUF104
APE_2617.1	PF01850	PIN domain
APE_2617a	PF04014	Antidote-toxin recognition MazE
APE_2617b	PF01850	PIN domain
APE_2617c	PF01954	Protein of unknown function DUF104
APE_2617e.1	PF04255	Protein of unknown function (DUF433)