locus-tag class description ALSL_0001 PF00308 Bacterial dnaA protein ALSL_0001 PF11638 DnaA N-terminal domain ALSL_0001 PF08299 Bacterial dnaA protein helix-turn-helix ALSL_0002 PF02767 DNA polymerase III beta subunit, central domain ALSL_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain ALSL_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain ALSL_0003 PF02463 RecF/RecN/SMC N terminal domain ALSL_0004 PF18053 DNA gyrase B subunit insert domain ALSL_0004 PF00986 DNA gyrase B subunit, carboxyl terminus ALSL_0004 PF00204 DNA gyrase B ALSL_0004 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0004 PF01751 Toprim domain ALSL_0006 PF03544 Gram-negative bacterial TonB protein C-terminal ALSL_0007 PF01618 MotA/TolQ/ExbB proton channel family ALSL_0008 PF02472 Biopolymer transport protein ExbD/TolR ALSL_0009 PF02472 Biopolymer transport protein ExbD/TolR ALSL_0010 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ ALSL_0011 PF01648 4'-phosphopantetheinyl transferase superfamily ALSL_0012 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0012 PF00072 Response regulator receiver domain ALSL_0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0012 PF01627 Hpt domain ALSL_0012 PF00672 HAMP domain ALSL_0013 PF00072 Response regulator receiver domain ALSL_0013 PF00196 Bacterial regulatory proteins, luxR family ALSL_0014 PF13193 AMP-binding enzyme C-terminal domain ALSL_0014 PF00501 AMP-binding enzyme ALSL_0014 PF16177 Acetyl-coenzyme A synthetase N-terminus ALSL_0016 PF07690 Major Facilitator Superfamily ALSL_0018 PF04055 Radical SAM superfamily ALSL_0019 PF03109 ABC1 family ALSL_0023 PF03922 OmpW family ALSL_0024 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALSL_0024 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALSL_0025 PF00351 Biopterin-dependent aromatic amino acid hydroxylase ALSL_0027 PF01037 Lrp/AsnC ligand binding domain ALSL_0030 PF07995 Glucose / Sorbosone dehydrogenase ALSL_0031 PF05067 Manganese containing catalase ALSL_0032 PF01161 Phosphatidylethanolamine-binding protein ALSL_0038 PF02673 Bacitracin resistance protein BacA ALSL_0040 PF00120 Glutamine synthetase, catalytic domain ALSL_0040 PF03951 Glutamine synthetase, beta-Grasp domain ALSL_0044 PF00294 pfkB family carbohydrate kinase ALSL_0044 PF01467 Cytidylyltransferase-like ALSL_0045 PF00128 Alpha amylase, catalytic domain ALSL_0046 PF00593 TonB dependent receptor ALSL_0046 PF07715 TonB-dependent Receptor Plug Domain ALSL_0047 PF00356 Bacterial regulatory proteins, lacI family ALSL_0048 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0048 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0048 PF00989 PAS fold ALSL_0049 PF00158 Sigma-54 interaction domain ALSL_0049 PF00072 Response regulator receiver domain ALSL_0049 PF02954 Bacterial regulatory protein, Fis family ALSL_0052 PF00108 Thiolase, N-terminal domain ALSL_0052 PF02803 Thiolase, C-terminal domain ALSL_0054 PF13091 PLD-like domain ALSL_0059 PF17284 Spermidine synthase tetramerisation domain ALSL_0060 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain ALSL_0060 PF17944 Arginine decarboxylase C-terminal helical extension ALSL_0060 PF17810 Arginine decarboxylase helical bundle domain ALSL_0063 PF00106 short chain dehydrogenase ALSL_0065 PF00750 tRNA synthetases class I (R) ALSL_0065 PF05746 DALR anticodon binding domain ALSL_0065 PF03485 Arginyl tRNA synthetase N terminal domain ALSL_0067 PF04002 RadC-like JAB domain ALSL_0068 PF02441 Flavoprotein ALSL_0068 PF04127 DNA / pantothenate metabolism flavoprotein ALSL_0069 PF00692 dUTPase ALSL_0070 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALSL_0070 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALSL_0070 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALSL_0070 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALSL_0072 PF00156 Phosphoribosyl transferase domain ALSL_0073 PF03372 Endonuclease/Exonuclease/phosphatase family ALSL_0074 PF07690 Major Facilitator Superfamily ALSL_0076 PF03702 Anhydro-N-acetylmuramic acid kinase ALSL_0077 PF04225 Opacity-associated protein A LysM-like domain ALSL_0077 PF01551 Peptidase family M23 ALSL_0079 PF00579 tRNA synthetases class I (W and Y) ALSL_0080 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0080 PF01610 Transposase ALSL_0080 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0088 PF02682 Carboxyltransferase domain, subdomain C and D ALSL_0089 PF02626 Carboxyltransferase domain, subdomain A and B ALSL_0090 PF03746 LamB/YcsF family ALSL_0091 PF00958 GMP synthase C terminal domain ALSL_0091 PF00117 Glutamine amidotransferase class-I ALSL_0092 PF00437 Type II/IV secretion system protein ALSL_0093 PF02091 Glycyl-tRNA synthetase alpha subunit ALSL_0094 PF02092 Glycyl-tRNA synthetase beta subunit ALSL_0094 PF05746 DALR anticodon binding domain ALSL_0096 PF00471 Ribosomal protein L33 ALSL_0097 PF00830 Ribosomal L28 family ALSL_0098 PF02556 Preprotein translocase subunit SecB ALSL_0099 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus ALSL_0099 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus ALSL_0100 PF00271 Helicase conserved C-terminal domain ALSL_0100 PF00176 SNF2 family N-terminal domain ALSL_0100 PF12419 SNF2 Helicase protein ALSL_0101 PF00580 UvrD/REP helicase N-terminal domain ALSL_0101 PF13361 UvrD-like helicase C-terminal domain ALSL_0102 PF00265 Thymidine kinase ALSL_0104 PF01381 Helix-turn-helix ALSL_0105 PF05015 RelE-like toxin of type II toxin-antitoxin system HigB ALSL_0106 PF06827 Zinc finger found in FPG and IleRS ALSL_0106 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain ALSL_0106 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain ALSL_0107 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALSL_0107 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ALSL_0111 PF00005 ABC transporter ALSL_0113 PF14489 QueF-like protein ALSL_0113 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term ALSL_0114 PF00326 Prolyl oligopeptidase family ALSL_0114 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ALSL_0115 PF01381 Helix-turn-helix ALSL_0118 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALSL_0118 PF00128 Alpha amylase, catalytic domain ALSL_0119 PF08494 DEAD/H associated ALSL_0119 PF00270 DEAD/DEAH box helicase ALSL_0119 PF00271 Helicase conserved C-terminal domain ALSL_0122 PF00849 RNA pseudouridylate synthase ALSL_0124 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALSL_0124 PF00933 Glycosyl hydrolase family 3 N terminal domain ALSL_0124 PF14310 Fibronectin type III-like domain ALSL_0125 PF00248 Aldo/keto reductase family ALSL_0127 PF03971 Monomeric isocitrate dehydrogenase ALSL_0129 PF13520 Amino acid permease ALSL_0130 PF13823 Alcohol dehydrogenase GroES-associated ALSL_0130 PF00107 Zinc-binding dehydrogenase ALSL_0130 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_0131 PF01220 Dehydroquinase class II ALSL_0132 PF00364 Biotin-requiring enzyme ALSL_0133 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALSL_0133 PF00289 Biotin carboxylase, N-terminal domain ALSL_0133 PF02785 Biotin carboxylase C-terminal domain ALSL_0136 PF02954 Bacterial regulatory protein, Fis family ALSL_0137 PF02142 MGS-like domain ALSL_0137 PF01808 AICARFT/IMPCHase bienzyme ALSL_0140 PF00892 EamA-like transporter family ALSL_0142 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALSL_0142 PF00476 DNA polymerase family A ALSL_0142 PF01612 3'-5' exonuclease ALSL_0142 PF01367 5'-3' exonuclease, C-terminal SAM fold ALSL_0144 PF00561 alpha/beta hydrolase fold ALSL_0144 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus ALSL_0146 PF00106 short chain dehydrogenase ALSL_0147 PF01515 Phosphate acetyl/butaryl transferase ALSL_0148 PF00871 Acetokinase family ALSL_0150 PF13361 UvrD-like helicase C-terminal domain ALSL_0150 PF00580 UvrD/REP helicase N-terminal domain ALSL_0151 PF00155 Aminotransferase class I and II ALSL_0153 PF00924 Mechanosensitive ion channel ALSL_0154 PF10011 Predicted membrane protein (DUF2254) ALSL_0155 PF00999 Sodium/hydrogen exchanger family ALSL_0157 PF04545 Sigma-70, region 4 ALSL_0157 PF04539 Sigma-70 region 3 ALSL_0157 PF04542 Sigma-70 region 2 ALSL_0157 PF00140 Sigma-70 factor, region 1.2 ALSL_0157 PF03979 Sigma-70 factor, region 1.1 ALSL_0157 PF04546 Sigma-70, non-essential region ALSL_0158 PF02580 D-Tyr-tRNA(Tyr) deacylase ALSL_0162 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase ALSL_0163 PF00535 Glycosyl transferase family 2 ALSL_0164 PF04932 O-Antigen ligase ALSL_0165 PF16363 GDP-mannose 4,6 dehydratase ALSL_0166 PF00535 Glycosyl transferase family 2 ALSL_0167 PF00535 Glycosyl transferase family 2 ALSL_0167 PF02709 N-terminal domain of galactosyltransferase ALSL_0169 PF01189 16S rRNA methyltransferase RsmB/F ALSL_0169 PF01029 NusB family ALSL_0172 PF02911 Formyl transferase, C-terminal domain ALSL_0172 PF00551 Formyl transferase ALSL_0173 PF01327 Polypeptide deformylase ALSL_0175 PF02481 DNA recombination-mediator protein A ALSL_0175 PF17782 DprA winged helix domain ALSL_0176 PF13368 Topoisomerase C-terminal repeat ALSL_0176 PF01751 Toprim domain ALSL_0176 PF01131 DNA topoisomerase ALSL_0177 PF01300 Telomere recombination ALSL_0179 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain ALSL_0179 PF02843 Phosphoribosylglycinamide synthetase, C domain ALSL_0179 PF02844 Phosphoribosylglycinamide synthetase, N domain ALSL_0182 PF00293 NUDIX domain ALSL_0182 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain ALSL_0182 PF09297 NADH pyrophosphatase zinc ribbon domain ALSL_0183 PF01521 Iron-sulphur cluster biosynthesis ALSL_0184 PF00210 Ferritin-like domain ALSL_0186 PF00293 NUDIX domain ALSL_0188 PF00923 Transaldolase/Fructose-6-phosphate aldolase ALSL_0189 PF00342 Phosphoglucose isomerase ALSL_0190 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain ALSL_0190 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase ALSL_0191 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ALSL_0191 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ALSL_0192 PF01242 6-pyruvoyl tetrahydropterin synthase ALSL_0194 PF02321 Outer membrane efflux protein ALSL_0195 PF00529 HlyD membrane-fusion protein of T1SS ALSL_0195 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_0196 PF07690 Major Facilitator Superfamily ALSL_0197 PF00483 Nucleotidyl transferase ALSL_0197 PF01050 Mannose-6-phosphate isomerase ALSL_0198 PF04321 RmlD substrate binding domain ALSL_0199 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase ALSL_0200 PF00483 Nucleotidyl transferase ALSL_0201 PF16363 GDP-mannose 4,6 dehydratase ALSL_0202 PF01053 Cys/Met metabolism PLP-dependent enzyme ALSL_0205 PF00005 ABC transporter ALSL_0210 PF00766 Electron transfer flavoprotein FAD-binding domain ALSL_0210 PF01012 Electron transfer flavoprotein domain ALSL_0211 PF01012 Electron transfer flavoprotein domain ALSL_0215 PF01425 Amidase ALSL_0219 PF00005 ABC transporter ALSL_0220 PF02405 Permease MlaE ALSL_0221 PF08669 Glycine cleavage T-protein C-terminal barrel domain ALSL_0221 PF01571 Aminomethyltransferase folate-binding domain ALSL_0222 PF01597 Glycine cleavage H-protein ALSL_0223 PF01340 Met Apo-repressor, MetJ ALSL_0228 PF00571 CBS domain ALSL_0229 PF00535 Glycosyl transferase family 2 ALSL_0230 PF00912 Transglycosylase ALSL_0231 PF01430 Hsp33 protein ALSL_0232 PF00563 EAL domain ALSL_0232 PF03707 Bacterial signalling protein N terminal repeat ALSL_0232 PF00990 Diguanylate cyclase, GGDEF domain ALSL_0235 PF00440 Bacterial regulatory proteins, tetR family ALSL_0237 PF09317 Domain of unknown function (DUF1974) ALSL_0237 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_0237 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALSL_0238 PF09827 CRISPR associated protein Cas2 ALSL_0239 PF01867 CRISPR associated protein Cas1 ALSL_0239 PF01930 Domain of unknown function DUF83 ALSL_0246 PF16658 Class II release factor RF3, C-terminal domain ALSL_0246 PF00009 Elongation factor Tu GTP binding domain ALSL_0248 PF00561 alpha/beta hydrolase fold ALSL_0249 PF01053 Cys/Met metabolism PLP-dependent enzyme ALSL_0250 PF00696 Amino acid kinase family ALSL_0250 PF00742 Homoserine dehydrogenase ALSL_0250 PF03447 Homoserine dehydrogenase, NAD binding domain ALSL_0251 PF13520 Amino acid permease ALSL_0256 PF03315 Serine dehydratase beta chain ALSL_0256 PF03313 Serine dehydratase alpha chain ALSL_0259 PF01292 Prokaryotic cytochrome b561 ALSL_0260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0260 PF00072 Response regulator receiver domain ALSL_0260 PF01627 Hpt domain ALSL_0260 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0260 PF00672 HAMP domain ALSL_0260 PF17149 Periplasmic sensor domain found in signal transduction proteins ALSL_0262 PF00883 Cytosol aminopeptidase family, catalytic domain ALSL_0262 PF02789 Cytosol aminopeptidase family, N-terminal domain ALSL_0264 PF03739 Lipopolysaccharide export system permease LptF/LptG ALSL_0267 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALSL_0267 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain ALSL_0269 PF00156 Phosphoribosyl transferase domain ALSL_0271 PF03466 LysR substrate binding domain ALSL_0271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_0273 PF01433 Peptidase family M1 domain ALSL_0273 PF11838 ERAP1-like C-terminal domain ALSL_0274 PF05175 Methyltransferase small domain ALSL_0274 PF17827 PrmC N-terminal domain ALSL_0275 PF00814 Glycoprotease family ALSL_0276 PF00690 Cation transporter/ATPase, N-terminus ALSL_0276 PF00689 Cation transporting ATPase, C-terminus ALSL_0277 PF02417 Chromate transporter ALSL_0278 PF01814 Hemerythrin HHE cation binding domain ALSL_0279 PF07681 DoxX ALSL_0281 PF13307 Helicase C-terminal domain ALSL_0281 PF04851 Type III restriction enzyme, res subunit ALSL_0285 PF00912 Transglycosylase ALSL_0285 PF00905 Penicillin binding protein transpeptidase domain ALSL_0285 PF14814 Bifunctional transglycosylase second domain ALSL_0288 PF02824 TGS domain ALSL_0288 PF04607 Region found in RelA / SpoT proteins ALSL_0288 PF13291 ACT domain ALSL_0290 PF00793 DAHP synthetase I family ALSL_0291 PF02021 Uncharacterised protein family UPF0102 ALSL_0292 PF04348 LppC putative lipoprotein ALSL_0293 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALSL_0295 PF04381 Putative exonuclease, RdgC ALSL_0297 PF00561 alpha/beta hydrolase fold ALSL_0298 PF01433 Peptidase family M1 domain ALSL_0299 PF00593 TonB dependent receptor ALSL_0299 PF07715 TonB-dependent Receptor Plug Domain ALSL_0300 PF00171 Aldehyde dehydrogenase family ALSL_0301 PF03969 AFG1-like ATPase ALSL_0303 PF00892 EamA-like transporter family ALSL_0304 PF13302 Acetyltransferase (GNAT) domain ALSL_0304 PF03352 Methyladenine glycosylase ALSL_0304 PF00117 Glutamine amidotransferase class-I ALSL_0304 PF00958 GMP synthase C terminal domain ALSL_0304 PF13673 Acetyltransferase (GNAT) domain ALSL_0305 PF00892 EamA-like transporter family ALSL_0307 PF13291 ACT domain ALSL_0307 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_0308 PF11940 Domain of unknown function (DUF3458) Ig-like fold ALSL_0308 PF17432 Domain of unknown function (DUF3458_C) ARM repeats ALSL_0308 PF01433 Peptidase family M1 domain ALSL_0311 PF01134 Glucose inhibited division protein A ALSL_0311 PF13932 GidA associated domain ALSL_0313 PF16921 Tex protein YqgF-like domain ALSL_0313 PF09371 Tex-like protein N-terminal domain ALSL_0313 PF00575 S1 RNA binding domain ALSL_0313 PF17674 HHH domain ALSL_0314 PF03797 Autotransporter beta-domain ALSL_0314 PF00657 GDSL-like Lipase/Acylhydrolase ALSL_0315 PF13649 Methyltransferase domain ALSL_0316 PF12697 Alpha/beta hydrolase family ALSL_0318 PF00156 Phosphoribosyl transferase domain ALSL_0319 PF08447 PAS fold ALSL_0319 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_0320 PF01040 UbiA prenyltransferase family ALSL_0322 PF13495 Phage integrase, N-terminal SAM-like domain ALSL_0322 PF00589 Phage integrase family ALSL_0323 PF01610 Transposase ALSL_0323 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0323 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0324 PF00072 Response regulator receiver domain ALSL_0324 PF00990 Diguanylate cyclase, GGDEF domain ALSL_0325 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_0325 PF00585 C-terminal regulatory domain of Threonine dehydratase ALSL_0326 PF10369 Small subunit of acetolactate synthase ALSL_0327 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALSL_0327 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALSL_0327 PF00205 Thiamine pyrophosphate enzyme, central domain ALSL_0328 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain ALSL_0328 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain ALSL_0329 PF00920 Dehydratase family ALSL_0330 PF00180 Isocitrate/isopropylmalate dehydrogenase ALSL_0331 PF00694 Aconitase C-terminal domain ALSL_0332 PF00330 Aconitase family (aconitate hydratase) ALSL_0333 PF01063 Amino-transferase class IV ALSL_0334 PF00682 HMGL-like ALSL_0334 PF08502 LeuA allosteric (dimerisation) domain ALSL_0335 PF14821 Threonine synthase N terminus ALSL_0335 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_0336 PF00288 GHMP kinases N terminal domain ALSL_0336 PF08544 GHMP kinases C terminal ALSL_0337 PF03447 Homoserine dehydrogenase, NAD binding domain ALSL_0337 PF00696 Amino acid kinase family ALSL_0337 PF00742 Homoserine dehydrogenase ALSL_0337 PF01842 ACT domain ALSL_0337 PF13840 ACT domain ALSL_0340 PF00149 Calcineurin-like phosphoesterase ALSL_0340 PF02872 5'-nucleotidase, C-terminal domain ALSL_0342 PF00593 TonB dependent receptor ALSL_0344 PF01979 Amidohydrolase family ALSL_0345 PF01380 SIS domain ALSL_0348 PF07929 Plasmid pRiA4b ORF-3-like protein ALSL_0353 PF01555 DNA methylase ALSL_0356 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALSL_0357 PF13533 Biotin-lipoyl like ALSL_0358 PF00873 AcrB/AcrD/AcrF family ALSL_0359 PF00873 AcrB/AcrD/AcrF family ALSL_0360 PF13419 Haloacid dehalogenase-like hydrolase ALSL_0361 PF02685 Glucokinase ALSL_0362 PF00232 Glycosyl hydrolase family 1 ALSL_0363 PF08402 TOBE domain ALSL_0363 PF00005 ABC transporter ALSL_0365 PF00490 Delta-aminolevulinic acid dehydratase ALSL_0367 PF00999 Sodium/hydrogen exchanger family ALSL_0367 PF02254 TrkA-N domain ALSL_0369 PF05166 YcgL domain ALSL_0370 PF00171 Aldehyde dehydrogenase family ALSL_0372 PF13360 PQQ-like domain ALSL_0372 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALSL_0374 PF00593 TonB dependent receptor ALSL_0374 PF07715 TonB-dependent Receptor Plug Domain ALSL_0375 PF03009 Glycerophosphoryl diester phosphodiesterase family ALSL_0378 PF18327 Proline utilization A proline dehydrogenase N-terminal domain ALSL_0378 PF14850 DNA-binding domain of Proline dehydrogenase ALSL_0378 PF01619 Proline dehydrogenase ALSL_0378 PF00171 Aldehyde dehydrogenase family ALSL_0380 PF00116 Cytochrome C oxidase subunit II, periplasmic domain ALSL_0380 PF02790 Cytochrome C oxidase subunit II, transmembrane domain ALSL_0381 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALSL_0383 PF00510 Cytochrome c oxidase subunit III ALSL_0388 PF01040 UbiA prenyltransferase family ALSL_0389 PF00486 Transcriptional regulatory protein, C terminal ALSL_0389 PF00072 Response regulator receiver domain ALSL_0390 PF08521 Two-component sensor kinase N-terminal ALSL_0390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0390 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0392 PF00873 AcrB/AcrD/AcrF family ALSL_0397 PF00689 Cation transporting ATPase, C-terminus ALSL_0397 PF00690 Cation transporter/ATPase, N-terminus ALSL_0399 PF13593 SBF-like CPA transporter family (DUF4137) ALSL_0400 PF09335 SNARE associated Golgi protein ALSL_0401 PF10410 DnaB-helicase binding domain of primase ALSL_0401 PF08278 DNA primase DnaG DnaB-binding ALSL_0401 PF08275 DNA primase catalytic core, N-terminal domain ALSL_0401 PF01807 CHC2 zinc finger ALSL_0404 PF01165 Ribosomal protein S21 ALSL_0405 PF00814 Glycoprotease family ALSL_0406 PF00990 Diguanylate cyclase, GGDEF domain ALSL_0406 PF07694 5TMR of 5TMR-LYT ALSL_0407 PF01227 GTP cyclohydrolase I ALSL_0408 PF02646 RmuC family ALSL_0410 PF17785 PUA-like domain ALSL_0410 PF10672 S-adenosylmethionine-dependent methyltransferase ALSL_0412 PF01636 Phosphotransferase enzyme family ALSL_0413 PF03061 Thioesterase superfamily ALSL_0414 PF00175 Oxidoreductase NAD-binding domain ALSL_0414 PF00111 2Fe-2S iron-sulfur cluster binding domain ALSL_0414 PF00970 Oxidoreductase FAD-binding domain ALSL_0418 PF09500 Putative thioesterase (yiiD_Cterm) ALSL_0418 PF00583 Acetyltransferase (GNAT) family ALSL_0422 PF03193 RsgA GTPase ALSL_0423 PF01209 ubiE/COQ5 methyltransferase family ALSL_0424 PF01515 Phosphate acetyl/butaryl transferase ALSL_0424 PF03949 Malic enzyme, NAD binding domain ALSL_0424 PF00390 Malic enzyme, N-terminal domain ALSL_0426 PF00224 Pyruvate kinase, barrel domain ALSL_0426 PF02887 Pyruvate kinase, alpha/beta domain ALSL_0427 PF00535 Glycosyl transferase family 2 ALSL_0430 PF13439 Glycosyltransferase Family 4 ALSL_0437 PF07963 Prokaryotic N-terminal methylation motif ALSL_0437 PF00114 Pilin (bacterial filament) ALSL_0438 PF07963 Prokaryotic N-terminal methylation motif ALSL_0438 PF00114 Pilin (bacterial filament) ALSL_0440 PF00326 Prolyl oligopeptidase family ALSL_0440 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region ALSL_0440 PF07676 WD40-like Beta Propeller Repeat ALSL_0443 PF00145 C-5 cytosine-specific DNA methylase ALSL_0443 PF01381 Helix-turn-helix ALSL_0444 PF13276 HTH-like domain ALSL_0444 PF00665 Integrase core domain ALSL_0445 PF01176 Translation initiation factor 1A / IF-1 ALSL_0448 PF00266 Aminotransferase class-V ALSL_0449 PF01842 ACT domain ALSL_0449 PF00800 Prephenate dehydratase ALSL_0449 PF01817 Chorismate mutase type II ALSL_0450 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALSL_0453 PF02348 Cytidylyltransferase ALSL_0455 PF08459 UvrC Helix-hairpin-helix N-terminal ALSL_0455 PF01541 GIY-YIG catalytic domain ALSL_0455 PF02151 UvrB/uvrC motif ALSL_0456 PF01066 CDP-alcohol phosphatidyltransferase ALSL_0458 PF13356 Arm DNA-binding domain ALSL_0458 PF00589 Phage integrase family ALSL_0459 PF00665 Integrase core domain ALSL_0460 PF01695 IstB-like ATP binding protein ALSL_0464 PF13276 HTH-like domain ALSL_0464 PF13683 Integrase core domain ALSL_0465 PF01527 Transposase ALSL_0468 PF04234 CopC domain ALSL_0473 PF05275 Copper resistance protein B precursor (CopB) ALSL_0474 PF07732 Multicopper oxidase ALSL_0474 PF07731 Multicopper oxidase ALSL_0474 PF00394 Multicopper oxidase ALSL_0475 PF00072 Response regulator receiver domain ALSL_0475 PF00486 Transcriptional regulatory protein, C terminal ALSL_0476 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0476 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0476 PF00672 HAMP domain ALSL_0477 PF01022 Bacterial regulatory protein, arsR family ALSL_0480 PF01758 Sodium Bile acid symporter family ALSL_0481 PF03960 ArsC family ALSL_0482 PF03551 Transcriptional regulator PadR-like family ALSL_0484 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0484 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0484 PF01610 Transposase ALSL_0488 PF00873 AcrB/AcrD/AcrF family ALSL_0489 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_0499 PF04002 RadC-like JAB domain ALSL_0501 PF05598 Transposase domain (DUF772) ALSL_0501 PF01609 Transposase DDE domain ALSL_0503 PF00376 MerR family regulatory protein ALSL_0503 PF09278 MerR, DNA binding ALSL_0505 PF03239 Iron permease FTR1 family ALSL_0507 PF01545 Cation efflux family ALSL_0510 PF00873 AcrB/AcrD/AcrF family ALSL_0511 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_0511 PF00529 HlyD membrane-fusion protein of T1SS ALSL_0515 PF03203 MerC mercury resistance protein ALSL_0516 PF09278 MerR, DNA binding ALSL_0516 PF00376 MerR family regulatory protein ALSL_0519 PF00873 AcrB/AcrD/AcrF family ALSL_0520 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_0525 PF05275 Copper resistance protein B precursor (CopB) ALSL_0526 PF07731 Multicopper oxidase ALSL_0526 PF07732 Multicopper oxidase ALSL_0526 PF00394 Multicopper oxidase ALSL_0530 PF00376 MerR family regulatory protein ALSL_0530 PF09278 MerR, DNA binding ALSL_0534 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0534 PF01610 Transposase ALSL_0534 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0545 PF12728 Helix-turn-helix domain ALSL_0547 PF01434 Peptidase family M41 ALSL_0547 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_0547 PF17862 AAA+ lid domain ALSL_0547 PF06480 FtsH Extracellular ALSL_0561 PF01609 Transposase DDE domain ALSL_0561 PF05598 Transposase domain (DUF772) ALSL_0569 PF06067 Domain of unknown function (DUF932) ALSL_0573 PF01609 Transposase DDE domain ALSL_0573 PF05598 Transposase domain (DUF772) ALSL_0575 PF13700 Domain of unknown function (DUF4158) ALSL_0575 PF01526 Tn3 transposase DDE domain ALSL_0575 PF13700 Domain of unknown function (DUF4158) ALSL_0575 PF01526 Tn3 transposase DDE domain ALSL_0576 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_0576 PF00403 Heavy-metal-associated domain ALSL_0576 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALSL_0577 PF00403 Heavy-metal-associated domain ALSL_0578 PF02411 MerT mercuric transport protein ALSL_0579 PF00376 MerR family regulatory protein ALSL_0579 PF09278 MerR, DNA binding ALSL_0587 PF01252 Signal peptidase (SPase) II ALSL_0588 PF00403 Heavy-metal-associated domain ALSL_0589 PF13411 MerR HTH family regulatory protein ALSL_0592 PF01131 DNA topoisomerase ALSL_0592 PF01751 Toprim domain ALSL_0593 PF00436 Single-strand binding protein family ALSL_0600 PF13614 AAA domain ALSL_0606 PF13181 Tetratricopeptide repeat ALSL_0609 PF02576 RimP N-terminal domain ALSL_0609 PF17384 RimP C-terminal SH3 domain ALSL_0610 PF13184 NusA-like KH domain ALSL_0610 PF08529 NusA N-terminal domain ALSL_0611 PF04760 Translation initiation factor IF-2, N-terminal region ALSL_0611 PF00009 Elongation factor Tu GTP binding domain ALSL_0611 PF11987 Translation-initiation factor 2 ALSL_0611 PF08364 Bacterial translation initiation factor IF-2 associated region ALSL_0612 PF02033 Ribosome-binding factor A ALSL_0613 PF09157 Pseudouridine synthase II TruB, C-terminal ALSL_0613 PF16198 tRNA pseudouridylate synthase B C-terminal domain ALSL_0613 PF01509 TruB family pseudouridylate synthase (N terminal domain) ALSL_0614 PF00312 Ribosomal protein S15 ALSL_0615 PF00013 KH domain ALSL_0615 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain ALSL_0615 PF00575 S1 RNA binding domain ALSL_0615 PF01138 3' exoribonuclease family, domain 1 ALSL_0615 PF03725 3' exoribonuclease family, domain 2 ALSL_0617 PF00561 alpha/beta hydrolase fold ALSL_0618 PF01008 Initiation factor 2 subunit family ALSL_0620 PF00521 DNA gyrase/topoisomerase IV, subunit A ALSL_0620 PF03989 DNA gyrase C-terminal domain, beta-propeller ALSL_0621 PF00011 Hsp20/alpha crystallin family ALSL_0622 PF00226 DnaJ domain ALSL_0622 PF01556 DnaJ C terminal domain ALSL_0623 PF00072 Response regulator receiver domain ALSL_0624 PF00107 Zinc-binding dehydrogenase ALSL_0624 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_0625 PF03641 Possible lysine decarboxylase ALSL_0626 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_0626 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALSL_0627 PF00364 Biotin-requiring enzyme ALSL_0627 PF02817 e3 binding domain ALSL_0627 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALSL_0628 PF16078 2-oxoglutarate dehydrogenase N-terminus ALSL_0628 PF16870 2-oxoglutarate dehydrogenase C-terminal ALSL_0628 PF00676 Dehydrogenase E1 component ALSL_0628 PF02779 Transketolase, pyrimidine binding domain ALSL_0630 PF08007 Cupin superfamily protein ALSL_0633 PF00175 Oxidoreductase NAD-binding domain ALSL_0633 PF00667 FAD binding domain ALSL_0633 PF00258 Flavodoxin ALSL_0634 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain ALSL_0634 PF01077 Nitrite and sulphite reductase 4Fe-4S domain ALSL_0635 PF01507 Phosphoadenosine phosphosulfate reductase family ALSL_0636 PF01747 ATP-sulfurylase ALSL_0636 PF14306 PUA-like domain ALSL_0637 PF03466 LysR substrate binding domain ALSL_0637 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_0638 PF14824 Sirohaem biosynthesis protein central ALSL_0638 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases ALSL_0638 PF10414 Sirohaem synthase dimerisation region ALSL_0639 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_0640 PF00043 Glutathione S-transferase, C-terminal domain ALSL_0640 PF02798 Glutathione S-transferase, N-terminal domain ALSL_0641 PF08328 Adenylosuccinate lyase C-terminal ALSL_0641 PF00206 Lyase ALSL_0642 PF00206 Lyase ALSL_0642 PF10415 Fumarase C C-terminus ALSL_0643 PF01725 Ham1 family ALSL_0644 PF01138 3' exoribonuclease family, domain 1 ALSL_0644 PF03725 3' exoribonuclease family, domain 2 ALSL_0645 PF03755 YicC-like family, N-terminal region ALSL_0645 PF08340 Domain of unknown function (DUF1732) ALSL_0646 PF00625 Guanylate kinase ALSL_0647 PF00005 ABC transporter ALSL_0648 PF02405 Permease MlaE ALSL_0652 PF04333 MlaA lipoprotein ALSL_0653 PF01192 RNA polymerase Rpb6 ALSL_0654 PF04607 Region found in RelA / SpoT proteins ALSL_0654 PF02824 TGS domain ALSL_0654 PF13291 ACT domain ALSL_0655 PF01042 Endoribonuclease L-PSP ALSL_0656 PF00270 DEAD/DEAH box helicase ALSL_0656 PF00271 Helicase conserved C-terminal domain ALSL_0656 PF17191 RecG wedge domain ALSL_0657 PF01156 Inosine-uridine preferring nucleoside hydrolase ALSL_0658 PF01197 Ribosomal protein L31 ALSL_0660 PF00285 Citrate synthase, C-terminal domain ALSL_0662 PF00912 Transglycosylase ALSL_0662 PF17092 Penicillin-binding protein OB-like domain ALSL_0662 PF00905 Penicillin binding protein transpeptidase domain ALSL_0663 PF02390 Putative methyltransferase ALSL_0664 PF05690 Thiazole biosynthesis protein ThiG ALSL_0665 PF02597 ThiS family ALSL_0665 PF05690 Thiazole biosynthesis protein ThiG ALSL_0668 PF18030 RimK PreATP-grasp domain ALSL_0668 PF08443 RimK-like ATP-grasp domain ALSL_0669 PF00486 Transcriptional regulatory protein, C terminal ALSL_0669 PF00072 Response regulator receiver domain ALSL_0670 PF00989 PAS fold ALSL_0670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0670 PF11808 Phosphate regulon sensor protein PhoR ALSL_0670 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0671 PF02219 Methylenetetrahydrofolate reductase ALSL_0672 PF00115 Cytochrome C and Quinol oxidase polypeptide I ALSL_0675 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP ALSL_0675 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALSL_0677 PF12801 4Fe-4S binding domain ALSL_0677 PF13746 4Fe-4S dicluster domain ALSL_0677 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase ALSL_0679 PF00403 Heavy-metal-associated domain ALSL_0682 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain ALSL_0682 PF05221 S-adenosyl-L-homocysteine hydrolase ALSL_0683 PF00311 Phosphoenolpyruvate carboxylase ALSL_0684 PF01565 FAD binding domain ALSL_0684 PF02913 FAD linked oxidases, C-terminal domain ALSL_0685 PF01810 LysE type translocator ALSL_0687 PF00579 tRNA synthetases class I (W and Y) ALSL_0690 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALSL_0690 PF00364 Biotin-requiring enzyme ALSL_0690 PF02817 e3 binding domain ALSL_0691 PF02780 Transketolase, C-terminal domain ALSL_0691 PF02779 Transketolase, pyrimidine binding domain ALSL_0692 PF00676 Dehydrogenase E1 component ALSL_0693 PF03301 Tryptophan 2,3-dioxygenase ALSL_0694 PF08447 PAS fold ALSL_0694 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_0694 PF13426 PAS domain ALSL_0696 PF09364 XFP N-terminal domain ALSL_0696 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase ALSL_0696 PF09363 XFP C-terminal domain ALSL_0698 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALSL_0700 PF04209 homogentisate 1,2-dioxygenase ALSL_0702 PF06969 HemN C-terminal domain ALSL_0702 PF04055 Radical SAM superfamily ALSL_0703 PF00027 Cyclic nucleotide-binding domain ALSL_0703 PF00325 Bacterial regulatory proteins, crp family ALSL_0705 PF02561 Flagellar protein FliS ALSL_0708 PF00158 Sigma-54 interaction domain ALSL_0708 PF06490 Flagellar regulatory protein FleQ ALSL_0708 PF02954 Bacterial regulatory protein, Fis family ALSL_0709 PF02049 Flagellar hook-basal body complex protein FliE ALSL_0710 PF08345 Flagellar M-ring protein C-terminal ALSL_0710 PF01514 Secretory protein of YscJ/FliF family ALSL_0711 PF01706 FliG C-terminal domain ALSL_0711 PF14842 FliG N-terminal domain ALSL_0711 PF14841 FliG middle domain ALSL_0713 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALSL_0713 PF18269 T3SS EscN ATPase C-terminal domain ALSL_0717 PF02154 Flagellar motor switch protein FliM ALSL_0717 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALSL_0718 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term ALSL_0719 PF04347 Flagellar biosynthesis protein, FliO ALSL_0720 PF00813 FliP family ALSL_0721 PF01313 Bacterial export proteins, family 3 ALSL_0722 PF01311 Bacterial export proteins, family 1 ALSL_0723 PF01312 FlhB HrpN YscU SpaS Family ALSL_0724 PF00771 FHIPEP family ALSL_0725 PF00448 SRP54-type protein, GTPase domain ALSL_0726 PF10609 NUBPL iron-transfer P-loop NTPase ALSL_0727 PF04542 Sigma-70 region 2 ALSL_0727 PF04545 Sigma-70, region 4 ALSL_0727 PF04539 Sigma-70 region 3 ALSL_0728 PF00072 Response regulator receiver domain ALSL_0729 PF04344 Chemotaxis phosphatase, CheZ ALSL_0730 PF00072 Response regulator receiver domain ALSL_0730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0730 PF02895 Signal transducing histidine kinase, homodimeric domain ALSL_0730 PF01584 CheW-like domain ALSL_0730 PF01627 Hpt domain ALSL_0731 PF01618 MotA/TolQ/ExbB proton channel family ALSL_0732 PF00691 OmpA family ALSL_0732 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALSL_0733 PF01584 CheW-like domain ALSL_0735 PF00005 ABC transporter ALSL_0736 PF13533 Biotin-lipoyl like ALSL_0738 PF01011 PQQ enzyme repeat ALSL_0741 PF00083 Sugar (and other) transporter ALSL_0743 PF05378 Hydantoinase/oxoprolinase N-terminal region ALSL_0743 PF01968 Hydantoinase/oxoprolinase ALSL_0745 PF00069 Protein kinase domain ALSL_0745 PF13191 AAA ATPase domain ALSL_0746 PF07715 TonB-dependent Receptor Plug Domain ALSL_0746 PF00593 TonB dependent receptor ALSL_0748 PF00072 Response regulator receiver domain ALSL_0748 PF00486 Transcriptional regulatory protein, C terminal ALSL_0749 PF09078 CheY binding ALSL_0749 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0749 PF01584 CheW-like domain ALSL_0749 PF01627 Hpt domain ALSL_0749 PF02895 Signal transducing histidine kinase, homodimeric domain ALSL_0750 PF01584 CheW-like domain ALSL_0751 PF02203 Tar ligand binding domain homologue ALSL_0751 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_0751 PF00672 HAMP domain ALSL_0752 PF01739 CheR methyltransferase, SAM binding domain ALSL_0752 PF03705 CheR methyltransferase, all-alpha domain ALSL_0753 PF03975 CheD chemotactic sensory transduction ALSL_0754 PF01339 CheB methylesterase ALSL_0754 PF00072 Response regulator receiver domain ALSL_0755 PF17200 Single Cache domain 2 ALSL_0755 PF00672 HAMP domain ALSL_0755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_0756 PF13466 STAS domain ALSL_0758 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase ALSL_0759 PF01799 [2Fe-2S] binding domain ALSL_0759 PF00111 2Fe-2S iron-sulfur cluster binding domain ALSL_0761 PF00696 Amino acid kinase family ALSL_0761 PF01842 ACT domain ALSL_0763 PF02875 Mur ligase family, glutamate ligase domain ALSL_0763 PF08245 Mur ligase middle domain ALSL_0766 PF01103 Surface antigen ALSL_0766 PF07244 Surface antigen variable number repeat ALSL_0766 PF17243 POTRA domain TamA domain 1 ALSL_0769 PF02366 Dolichyl-phosphate-mannose-protein mannosyltransferase ALSL_0772 PF00884 Sulfatase ALSL_0775 PF00210 Ferritin-like domain ALSL_0776 PF04408 Helicase associated domain (HA2) ALSL_0776 PF11898 Domain of unknown function (DUF3418) ALSL_0776 PF00271 Helicase conserved C-terminal domain ALSL_0776 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold ALSL_0776 PF00270 DEAD/DEAH box helicase ALSL_0779 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_0779 PF03466 LysR substrate binding domain ALSL_0780 PF03601 Conserved hypothetical protein 698 ALSL_0781 PF02780 Transketolase, C-terminal domain ALSL_0781 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALSL_0781 PF02779 Transketolase, pyrimidine binding domain ALSL_0787 PF01593 Flavin containing amine oxidoreductase ALSL_0788 PF00593 TonB dependent receptor ALSL_0788 PF07715 TonB-dependent Receptor Plug Domain ALSL_0793 PF07715 TonB-dependent Receptor Plug Domain ALSL_0793 PF00593 TonB dependent receptor ALSL_0796 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain ALSL_0796 PF02129 X-Pro dipeptidyl-peptidase (S15 family) ALSL_0797 PF12806 Acetyl-CoA dehydrogenase C-terminal like ALSL_0797 PF02770 Acyl-CoA dehydrogenase, middle domain ALSL_0797 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALSL_0797 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_0800 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALSL_0800 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALSL_0801 PF00230 Major intrinsic protein ALSL_0802 PF16901 C-terminal domain of alpha-glycerophosphate oxidase ALSL_0802 PF01266 FAD dependent oxidoreductase ALSL_0803 PF01965 DJ-1/PfpI family ALSL_0804 PF05649 Peptidase family M13 ALSL_0804 PF01431 Peptidase family M13 ALSL_0807 PF00970 Oxidoreductase FAD-binding domain ALSL_0807 PF00175 Oxidoreductase NAD-binding domain ALSL_0808 PF01207 Dihydrouridine synthase (Dus) ALSL_0810 PF00072 Response regulator receiver domain ALSL_0810 PF00486 Transcriptional regulatory protein, C terminal ALSL_0811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_0811 PF00512 His Kinase A (phospho-acceptor) domain ALSL_0811 PF13755 Sensor N-terminal transmembrane domain ALSL_0811 PF00672 HAMP domain ALSL_0811 PF13756 Stimulus-sensing domain ALSL_0813 PF02237 Biotin protein ligase C terminal domain ALSL_0813 PF03099 Biotin/lipoate A/B protein ligase family ALSL_0814 PF03309 Type III pantothenate kinase ALSL_0817 PF00491 Arginase family ALSL_0818 PF03825 Nucleoside H+ symporter ALSL_0819 PF01207 Dihydrouridine synthase (Dus) ALSL_0821 PF00438 S-adenosylmethionine synthetase, N-terminal domain ALSL_0821 PF02772 S-adenosylmethionine synthetase, central domain ALSL_0821 PF02773 S-adenosylmethionine synthetase, C-terminal domain ALSL_0822 PF00011 Hsp20/alpha crystallin family ALSL_0823 PF05524 PEP-utilising enzyme, N-terminal ALSL_0823 PF02896 PEP-utilising enzyme, TIM barrel domain ALSL_0823 PF00391 PEP-utilising enzyme, mobile domain ALSL_0824 PF00381 PTS HPr component phosphorylation site ALSL_0826 PF03668 P-loop ATPase protein family ALSL_0827 PF07475 HPr Serine kinase C-terminal domain ALSL_0827 PF02603 HPr Serine kinase N terminus ALSL_0828 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein ALSL_0829 PF04552 Sigma-54, DNA binding domain ALSL_0829 PF04963 Sigma-54 factor, core binding domain ALSL_0829 PF00309 Sigma-54 factor, Activator interacting domain (AID) ALSL_0830 PF12399 Branched-chain amino acid ATP-binding cassette transporter ALSL_0830 PF00005 ABC transporter ALSL_0834 PF00571 CBS domain ALSL_0834 PF01380 SIS domain ALSL_0836 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) ALSL_0839 PF00551 Formyl transferase ALSL_0840 PF02769 AIR synthase related protein, C-terminal domain ALSL_0840 PF00586 AIR synthase related protein, N-terminal domain ALSL_0842 PF01594 AI-2E family transporter ALSL_0843 PF00308 Bacterial dnaA protein ALSL_0844 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) ALSL_0844 PF00364 Biotin-requiring enzyme ALSL_0844 PF02817 e3 binding domain ALSL_0845 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALSL_0845 PF12795 Mechanosensitive ion channel porin domain ALSL_0845 PF00924 Mechanosensitive ion channel ALSL_0846 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALSL_0846 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_0847 PF00294 pfkB family carbohydrate kinase ALSL_0850 PF06969 HemN C-terminal domain ALSL_0850 PF04055 Radical SAM superfamily ALSL_0855 PF00005 ABC transporter ALSL_0856 PF07729 FCD domain ALSL_0856 PF00392 Bacterial regulatory proteins, gntR family ALSL_0858 PF07969 Amidohydrolase family ALSL_0859 PF00128 Alpha amylase, catalytic domain ALSL_0859 PF11941 Domain of unknown function (DUF3459) ALSL_0860 PF04820 Tryptophan halogenase ALSL_0861 PF04328 Selenoprotein, putative ALSL_0862 PF02554 Carbon starvation protein CstA ALSL_0862 PF13722 5TM C-terminal transporter carbon starvation CstA ALSL_0863 PF00355 Rieske [2Fe-2S] domain ALSL_0864 PF17932 Tetracyclin repressor-like, C-terminal domain ALSL_0864 PF00440 Bacterial regulatory proteins, tetR family ALSL_0866 PF00501 AMP-binding enzyme ALSL_0866 PF13193 AMP-binding enzyme C-terminal domain ALSL_0869 PF00866 Ring hydroxylating beta subunit ALSL_0870 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_0870 PF00355 Rieske [2Fe-2S] domain ALSL_0871 PF00698 Acyl transferase domain ALSL_0871 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_0871 PF08659 KR domain ALSL_0871 PF00550 Phosphopantetheine attachment site ALSL_0871 PF14765 Polyketide synthase dehydratase ALSL_0872 PF13193 AMP-binding enzyme C-terminal domain ALSL_0872 PF00501 AMP-binding enzyme ALSL_0873 PF00501 AMP-binding enzyme ALSL_0873 PF13193 AMP-binding enzyme C-terminal domain ALSL_0874 PF01323 DSBA-like thioredoxin domain ALSL_0877 PF07836 DmpG-like communication domain ALSL_0877 PF00682 HMGL-like ALSL_0878 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALSL_0878 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALSL_0879 PF00561 alpha/beta hydrolase fold ALSL_0880 PF00171 Aldehyde dehydrogenase family ALSL_0881 PF03928 Haem-degrading ALSL_0882 PF07729 FCD domain ALSL_0882 PF00392 Bacterial regulatory proteins, gntR family ALSL_0883 PF00355 Rieske [2Fe-2S] domain ALSL_0883 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_0884 PF00866 Ring hydroxylating beta subunit ALSL_0885 PF00106 short chain dehydrogenase ALSL_0886 PF02441 Flavoprotein ALSL_0887 PF02913 FAD linked oxidases, C-terminal domain ALSL_0887 PF01565 FAD binding domain ALSL_0889 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase ALSL_0890 PF00171 Aldehyde dehydrogenase family ALSL_0892 PF01565 FAD binding domain ALSL_0892 PF02913 FAD linked oxidases, C-terminal domain ALSL_0894 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALSL_0895 PF00111 2Fe-2S iron-sulfur cluster binding domain ALSL_0896 PF00175 Oxidoreductase NAD-binding domain ALSL_0896 PF00111 2Fe-2S iron-sulfur cluster binding domain ALSL_0896 PF00970 Oxidoreductase FAD-binding domain ALSL_0898 PF02332 Methane/Phenol/Toluene Hydroxylase ALSL_0898 PF04945 YHS domain ALSL_0899 PF02406 MmoB/DmpM family ALSL_0900 PF02332 Methane/Phenol/Toluene Hydroxylase ALSL_0902 PF02954 Bacterial regulatory protein, Fis family ALSL_0902 PF06505 Activator of aromatic catabolism ALSL_0902 PF02830 V4R domain ALSL_0902 PF00158 Sigma-54 interaction domain ALSL_0903 PF01327 Polypeptide deformylase ALSL_0904 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family ALSL_0905 PF00005 ABC transporter ALSL_0905 PF12848 ABC transporter ALSL_0907 PF00459 Inositol monophosphatase family ALSL_0908 PF00293 NUDIX domain ALSL_0909 PF00459 Inositol monophosphatase family ALSL_0910 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain ALSL_0910 PF01612 3'-5' exonuclease ALSL_0910 PF01367 5'-3' exonuclease, C-terminal SAM fold ALSL_0910 PF00476 DNA polymerase family A ALSL_0912 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALSL_0913 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALSL_0913 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALSL_0917 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch ALSL_0918 PF02233 NAD(P) transhydrogenase beta subunit ALSL_0920 PF01883 Iron-sulfur cluster assembly protein ALSL_0921 PF07504 Fungalysin/Thermolysin Propeptide Motif ALSL_0921 PF01447 Thermolysin metallopeptidase, catalytic domain ALSL_0921 PF02868 Thermolysin metallopeptidase, alpha-helical domain ALSL_0921 PF04151 Bacterial pre-peptidase C-terminal domain ALSL_0921 PF03413 Peptidase propeptide and YPEB domain ALSL_0922 PF17763 Glutaminase/Asparaginase C-terminal domain ALSL_0922 PF00710 Asparaginase, N-terminal ALSL_0923 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_0923 PF02770 Acyl-CoA dehydrogenase, middle domain ALSL_0923 PF18158 Adaptive response protein AidB N-terminal domain ALSL_0924 PF07687 Peptidase dimerisation domain ALSL_0924 PF01546 Peptidase family M20/M25/M40 ALSL_0926 PF03358 NADPH-dependent FMN reductase ALSL_0927 PF03631 Virulence factor BrkB ALSL_0928 PF08534 Redoxin ALSL_0929 PF00708 Acylphosphatase ALSL_0930 PF03462 PCRF domain ALSL_0930 PF00472 RF-1 domain ALSL_0931 PF01488 Shikimate / quinate 5-dehydrogenase ALSL_0931 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain ALSL_0931 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain ALSL_0933 PF03550 Outer membrane lipoprotein LolB ALSL_0934 PF08544 GHMP kinases C terminal ALSL_0934 PF00288 GHMP kinases N terminal domain ALSL_0936 PF14693 Ribosomal protein TL5, C-terminal domain ALSL_0936 PF01386 Ribosomal L25p family ALSL_0937 PF01195 Peptidyl-tRNA hydrolase ALSL_0938 PF06071 Protein of unknown function (DUF933) ALSL_0938 PF01926 50S ribosome-binding GTPase ALSL_0939 PF04377 Arginine-tRNA-protein transferase, C terminus ALSL_0939 PF04376 Arginine-tRNA-protein transferase, N terminus ALSL_0944 PF02926 THUMP domain ALSL_0944 PF10672 S-adenosylmethionine-dependent methyltransferase ALSL_0944 PF01170 Putative RNA methylase family UPF0020 ALSL_0945 PF00849 RNA pseudouridylate synthase ALSL_0945 PF01479 S4 domain ALSL_0946 PF01230 HIT domain ALSL_0948 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0948 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0948 PF01610 Transposase ALSL_0949 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family ALSL_0949 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain ALSL_0950 PF00255 Glutathione peroxidase ALSL_0951 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALSL_0952 PF02253 Phospholipase A1 ALSL_0955 PF00313 'Cold-shock' DNA-binding domain ALSL_0956 PF00313 'Cold-shock' DNA-binding domain ALSL_0958 PF11992 Domain of unknown function (DUF3488) ALSL_0958 PF01841 Transglutaminase-like superfamily ALSL_0958 PF13559 Domain of unknown function (DUF4129) ALSL_0960 PF07726 ATPase family associated with various cellular activities (AAA) ALSL_0960 PF17863 AAA lid domain ALSL_0963 PF02620 Large ribosomal RNA subunit accumulation protein YceD ALSL_0964 PF01783 Ribosomal L32p protein family ALSL_0965 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III ALSL_0965 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal ALSL_0966 PF01610 Transposase ALSL_0966 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_0966 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_0968 PF00196 Bacterial regulatory proteins, luxR family ALSL_0968 PF00072 Response regulator receiver domain ALSL_0969 PF00575 S1 RNA binding domain ALSL_0969 PF10150 Ribonuclease E/G family ALSL_0969 PF12111 Polyribonucleotide phosphorylase C terminal ALSL_0970 PF01479 S4 domain ALSL_0970 PF00849 RNA pseudouridylate synthase ALSL_0971 PF01588 Putative tRNA binding domain ALSL_0972 PF13742 OB-fold nucleic acid binding domain ALSL_0972 PF02601 Exonuclease VII, large subunit ALSL_0973 PF04751 Protein of unknown function (DUF615) ALSL_0974 PF01523 Putative modulator of DNA gyrase ALSL_0976 PF02224 Cytidylate kinase ALSL_0977 PF00575 S1 RNA binding domain ALSL_0978 PF00216 Bacterial DNA-binding protein ALSL_0979 PF00005 ABC transporter ALSL_0983 PF02630 SCO1/SenC ALSL_0984 PF04241 Protein of unknown function (DUF423) ALSL_0985 PF01416 tRNA pseudouridine synthase ALSL_0986 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase ALSL_0987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_0987 PF03466 LysR substrate binding domain ALSL_0988 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_0989 PF00290 Tryptophan synthase alpha chain ALSL_0990 PF01039 Carboxyl transferase domain ALSL_0990 PF17848 Acetyl-coA carboxylase zinc finger domain ALSL_0991 PF01569 PAP2 superfamily ALSL_0992 PF13439 Glycosyltransferase Family 4 ALSL_0992 PF00534 Glycosyl transferases group 1 ALSL_0994 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALSL_0996 PF01475 Ferric uptake regulator family ALSL_0998 PF01545 Cation efflux family ALSL_0999 PF17070 30S ribosomal protein Thx ALSL_1006 PF05974 Domain of unknown function (DUF892) ALSL_1009 PF03449 Transcription elongation factor, N-terminal ALSL_1009 PF01272 Transcription elongation factor, GreA/GreB, C-term ALSL_1010 PF01476 LysM domain ALSL_1010 PF01464 Transglycosylase SLT domain ALSL_1011 PF02666 Phosphatidylserine decarboxylase ALSL_1012 PF05175 Methyltransferase small domain ALSL_1014 PF01264 Chorismate synthase ALSL_1015 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALSL_1015 PF02774 Semialdehyde dehydrogenase, dimerisation domain ALSL_1020 PF01370 NAD dependent epimerase/dehydratase family ALSL_1020 PF02222 ATP-grasp domain ALSL_1022 PF00575 S1 RNA binding domain ALSL_1022 PF00773 RNB domain ALSL_1022 PF17876 Cold shock domain ALSL_1022 PF08461 Ribonuclease R winged-helix domain ALSL_1022 PF08206 Ribonuclease B OB domain ALSL_1023 PF00588 SpoU rRNA Methylase family ALSL_1023 PF08032 RNA 2'-O ribose methyltransferase substrate binding ALSL_1025 PF01895 PhoU domain ALSL_1026 PF00005 ABC transporter ALSL_1027 PF00528 Binding-protein-dependent transport system inner membrane component ALSL_1028 PF00528 Binding-protein-dependent transport system inner membrane component ALSL_1029 PF12849 PBP superfamily domain ALSL_1030 PF00929 Exonuclease ALSL_1032 PF00730 HhH-GPD superfamily base excision DNA repair protein ALSL_1032 PF00633 Helix-hairpin-helix motif ALSL_1032 PF10576 Iron-sulfur binding domain of endonuclease III ALSL_1033 PF04060 Putative Fe-S cluster ALSL_1034 PF09334 tRNA synthetases class I (M) ALSL_1034 PF01588 Putative tRNA binding domain ALSL_1035 PF07690 Major Facilitator Superfamily ALSL_1036 PF13419 Haloacid dehalogenase-like hydrolase ALSL_1037 PF00455 DeoR C terminal sensor domain ALSL_1037 PF08220 DeoR-like helix-turn-helix domain ALSL_1038 PF05532 CsbD-like ALSL_1043 PF01168 Alanine racemase, N-terminal domain ALSL_1044 PF00877 NlpC/P60 family ALSL_1046 PF00324 Amino acid permease ALSL_1047 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_1047 PF00107 Zinc-binding dehydrogenase ALSL_1048 PF00756 Putative esterase ALSL_1049 PF18337 RapA N-terminal Tudor like domain ALSL_1049 PF18339 RapA N-terminal Tudor like domain 1 ALSL_1049 PF00271 Helicase conserved C-terminal domain ALSL_1049 PF12137 RNA polymerase recycling family C-terminal ALSL_1049 PF00176 SNF2 family N-terminal domain ALSL_1051 PF13640 2OG-Fe(II) oxygenase superfamily ALSL_1051 PF18331 PKHD-type hydroxylase C-terminal domain ALSL_1052 PF00593 TonB dependent receptor ALSL_1052 PF07715 TonB-dependent Receptor Plug Domain ALSL_1053 PF00593 TonB dependent receptor ALSL_1053 PF07715 TonB-dependent Receptor Plug Domain ALSL_1054 PF05649 Peptidase family M13 ALSL_1054 PF01431 Peptidase family M13 ALSL_1056 PF01066 CDP-alcohol phosphatidyltransferase ALSL_1059 PF08264 Anticodon-binding domain of tRNA ALSL_1059 PF10458 Valyl tRNA synthetase tRNA binding arm ALSL_1059 PF00133 tRNA synthetases class I (I, L, M and V) ALSL_1061 PF01208 Uroporphyrinogen decarboxylase (URO-D) ALSL_1063 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 ALSL_1063 PF00132 Bacterial transferase hexapeptide (six repeats) ALSL_1064 PF07977 FabA-like domain ALSL_1065 PF00132 Bacterial transferase hexapeptide (six repeats) ALSL_1065 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD ALSL_1066 PF07244 Surface antigen variable number repeat ALSL_1066 PF01103 Surface antigen ALSL_1067 PF17820 PDZ domain ALSL_1067 PF02163 Peptidase family M50 ALSL_1068 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain ALSL_1068 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase ALSL_1068 PF13288 DXP reductoisomerase C-terminal domain ALSL_1070 PF01255 Putative undecaprenyl diphosphate synthase ALSL_1071 PF01765 Ribosome recycling factor ALSL_1072 PF00696 Amino acid kinase family ALSL_1073 PF00889 Elongation factor TS ALSL_1074 PF00318 Ribosomal protein S2 ALSL_1075 PF00557 Metallopeptidase family M24 ALSL_1076 PF00392 Bacterial regulatory proteins, gntR family ALSL_1076 PF07729 FCD domain ALSL_1077 PF14759 Reductase C-terminal ALSL_1077 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_1078 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALSL_1079 PF00043 Glutathione S-transferase, C-terminal domain ALSL_1079 PF02798 Glutathione S-transferase, N-terminal domain ALSL_1081 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALSL_1081 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation ALSL_1082 PF07836 DmpG-like communication domain ALSL_1082 PF00682 HMGL-like ALSL_1083 PF12697 Alpha/beta hydrolase family ALSL_1084 PF00561 alpha/beta hydrolase fold ALSL_1087 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_1087 PF00355 Rieske [2Fe-2S] domain ALSL_1088 PF00866 Ring hydroxylating beta subunit ALSL_1089 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALSL_1092 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALSL_1093 PF00355 Rieske [2Fe-2S] domain ALSL_1094 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_1094 PF00355 Rieske [2Fe-2S] domain ALSL_1095 PF00866 Ring hydroxylating beta subunit ALSL_1096 PF01494 FAD binding domain ALSL_1097 PF01494 FAD binding domain ALSL_1098 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALSL_1099 PF13193 AMP-binding enzyme C-terminal domain ALSL_1099 PF00501 AMP-binding enzyme ALSL_1100 PF00355 Rieske [2Fe-2S] domain ALSL_1100 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_1104 PF08335 GlnD PII-uridylyltransferase ALSL_1104 PF01909 Nucleotidyltransferase domain ALSL_1104 PF01966 HD domain ALSL_1105 PF01966 HD domain ALSL_1106 PF14602 Hexapeptide repeat of succinyl-transferase ALSL_1106 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal ALSL_1107 PF03960 ArsC family ALSL_1108 PF07687 Peptidase dimerisation domain ALSL_1108 PF01546 Peptidase family M20/M25/M40 ALSL_1113 PF00296 Luciferase-like monooxygenase ALSL_1116 PF02537 CrcB-like protein, Camphor Resistance (CrcB) ALSL_1117 PF06150 ChaB ALSL_1119 PF03776 Septum formation topological specificity factor MinE ALSL_1120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain ALSL_1121 PF05209 Septum formation inhibitor MinC, N-terminal domain ALSL_1121 PF03775 Septum formation inhibitor MinC, C-terminal domain ALSL_1124 PF14760 Rnk N-terminus ALSL_1124 PF01272 Transcription elongation factor, GreA/GreB, C-term ALSL_1125 PF03120 NAD-dependent DNA ligase OB-fold domain ALSL_1125 PF00533 BRCA1 C Terminus (BRCT) domain ALSL_1125 PF03119 NAD-dependent DNA ligase C4 zinc finger domain ALSL_1125 PF12826 Helix-hairpin-helix motif ALSL_1125 PF01653 NAD-dependent DNA ligase adenylation domain ALSL_1126 PF00152 tRNA synthetases class II (D, K and N) ALSL_1132 PF01668 SmpB protein ALSL_1133 PF03364 Polyketide cyclase / dehydrase and lipid transport ALSL_1134 PF03658 RnfH family Ubiquitin ALSL_1135 PF04355 SmpA / OmlA family ALSL_1136 PF01475 Ferric uptake regulator family ALSL_1137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1137 PF13492 GAF domain ALSL_1137 PF07730 Histidine kinase ALSL_1138 PF00072 Response regulator receiver domain ALSL_1138 PF00196 Bacterial regulatory proteins, luxR family ALSL_1139 PF13476 AAA domain ALSL_1139 PF02463 RecF/RecN/SMC N terminal domain ALSL_1140 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding ALSL_1140 PF01628 HrcA protein C terminal domain ALSL_1141 PF01025 GrpE ALSL_1142 PF00012 Hsp70 protein ALSL_1143 PF00226 DnaJ domain ALSL_1143 PF01556 DnaJ C terminal domain ALSL_1143 PF00684 DnaJ central domain ALSL_1144 PF05173 Dihydrodipicolinate reductase, C-terminus ALSL_1144 PF01113 Dihydrodipicolinate reductase, N-terminus ALSL_1147 PF00117 Glutamine amidotransferase class-I ALSL_1147 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain ALSL_1148 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain ALSL_1148 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALSL_1148 PF02142 MGS-like domain ALSL_1149 PF03449 Transcription elongation factor, N-terminal ALSL_1149 PF01272 Transcription elongation factor, GreA/GreB, C-term ALSL_1150 PF00679 Elongation factor G C-terminus ALSL_1150 PF03144 Elongation factor Tu domain 2 ALSL_1150 PF00009 Elongation factor Tu GTP binding domain ALSL_1150 PF06421 GTP-binding protein LepA C-terminus ALSL_1151 PF10502 Signal peptidase, peptidase S26 ALSL_1153 PF14622 Ribonuclease-III-like ALSL_1153 PF00035 Double-stranded RNA binding motif ALSL_1154 PF07650 KH domain ALSL_1154 PF01926 50S ribosome-binding GTPase ALSL_1155 PF02565 Recombination protein O C terminal ALSL_1155 PF11967 Recombination protein O N terminal ALSL_1156 PF01627 Hpt domain ALSL_1156 PF00512 His Kinase A (phospho-acceptor) domain ALSL_1156 PF00072 Response regulator receiver domain ALSL_1156 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1156 PF00672 HAMP domain ALSL_1156 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) ALSL_1159 PF05958 tRNA (Uracil-5-)-methyltransferase ALSL_1160 PF01928 CYTH domain ALSL_1161 PF00933 Glycosyl hydrolase family 3 N terminal domain ALSL_1163 PF01048 Phosphorylase superfamily ALSL_1164 PF00313 'Cold-shock' DNA-binding domain ALSL_1165 PF00999 Sodium/hydrogen exchanger family ALSL_1166 PF07690 Major Facilitator Superfamily ALSL_1167 PF07730 Histidine kinase ALSL_1168 PF00072 Response regulator receiver domain ALSL_1168 PF00196 Bacterial regulatory proteins, luxR family ALSL_1171 PF05698 Bacterial trigger factor protein (TF) C-terminus ALSL_1171 PF05697 Bacterial trigger factor protein (TF) ALSL_1172 PF00574 Clp protease ALSL_1173 PF06689 ClpX C4-type zinc finger ALSL_1173 PF10431 C-terminal, D2-small domain, of ClpB protein ALSL_1173 PF07724 AAA domain (Cdc48 subfamily) ALSL_1174 PF02190 ATP-dependent protease La (LON) substrate-binding domain ALSL_1174 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_1174 PF05362 Lon protease (S16) C-terminal proteolytic domain ALSL_1175 PF00216 Bacterial DNA-binding protein ALSL_1178 PF13145 PPIC-type PPIASE domain ALSL_1179 PF01476 LysM domain ALSL_1179 PF00877 NlpC/P60 family ALSL_1180 PF00753 Metallo-beta-lactamase superfamily ALSL_1180 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALSL_1182 PF00075 RNase H ALSL_1183 PF00929 Exonuclease ALSL_1187 PF00083 Sugar (and other) transporter ALSL_1190 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALSL_1191 PF00933 Glycosyl hydrolase family 3 N terminal domain ALSL_1191 PF01915 Glycosyl hydrolase family 3 C-terminal domain ALSL_1191 PF14310 Fibronectin type III-like domain ALSL_1192 PF02657 Fe-S metabolism associated domain ALSL_1193 PF01406 tRNA synthetases class I (C) catalytic domain ALSL_1193 PF09190 DALR domain ALSL_1196 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALSL_1196 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALSL_1198 PF00764 Arginosuccinate synthase ALSL_1199 PF01546 Peptidase family M20/M25/M40 ALSL_1199 PF07687 Peptidase dimerisation domain ALSL_1200 PF04768 NAT, N-acetyltransferase, of N-acetylglutamate synthase ALSL_1200 PF00696 Amino acid kinase family ALSL_1202 PF01118 Semialdehyde dehydrogenase, NAD binding domain ALSL_1203 PF00206 Lyase ALSL_1204 PF00696 Amino acid kinase family ALSL_1204 PF01472 PUA domain ALSL_1205 PF00171 Aldehyde dehydrogenase family ALSL_1206 PF13193 AMP-binding enzyme C-terminal domain ALSL_1206 PF00501 AMP-binding enzyme ALSL_1207 PF00266 Aminotransferase class-V ALSL_1210 PF01132 Elongation factor P (EF-P) OB domain ALSL_1210 PF09285 Elongation factor P, C-terminal ALSL_1210 PF08207 Elongation factor P (EF-P) KOW-like domain ALSL_1211 PF00106 short chain dehydrogenase ALSL_1214 PF13673 Acetyltransferase (GNAT) domain ALSL_1216 PF01979 Amidohydrolase family ALSL_1217 PF00682 HMGL-like ALSL_1218 PF00289 Biotin carboxylase, N-terminal domain ALSL_1218 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain ALSL_1218 PF00364 Biotin-requiring enzyme ALSL_1218 PF02785 Biotin carboxylase C-terminal domain ALSL_1220 PF00005 ABC transporter ALSL_1220 PF00664 ABC transporter transmembrane region ALSL_1222 PF02559 CarD-like/TRCF domain ALSL_1222 PF00270 DEAD/DEAH box helicase ALSL_1222 PF00271 Helicase conserved C-terminal domain ALSL_1222 PF17757 UvrB interaction domain ALSL_1222 PF03461 TRCF domain ALSL_1224 PF16916 Dimerisation domain of Zinc Transporter ALSL_1224 PF01545 Cation efflux family ALSL_1226 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ ALSL_1227 PF07732 Multicopper oxidase ALSL_1227 PF07731 Multicopper oxidase ALSL_1227 PF00394 Multicopper oxidase ALSL_1228 PF05275 Copper resistance protein B precursor (CopB) ALSL_1230 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1230 PF00563 EAL domain ALSL_1230 PF08448 PAS fold ALSL_1231 PF05170 AsmA family ALSL_1232 PF02566 OsmC-like protein ALSL_1235 PF02567 Phenazine biosynthesis-like protein ALSL_1238 PF13662 Toprim domain ALSL_1238 PF02132 RecR protein ALSL_1239 PF02575 YbaB/EbfC DNA-binding family ALSL_1240 PF12169 DNA polymerase III subunits gamma and tau domain III ALSL_1240 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding ALSL_1240 PF12170 DNA polymerase III tau subunit V interacting with alpha ALSL_1243 PF00155 Aminotransferase class I and II ALSL_1244 PF00107 Zinc-binding dehydrogenase ALSL_1244 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_1246 PF17209 Hfq protein ALSL_1247 PF01926 50S ribosome-binding GTPase ALSL_1247 PF13167 GTP-binding GTPase N-terminal ALSL_1247 PF16360 GTP-binding GTPase Middle Region ALSL_1248 PF13298 DNA polymerase Ligase (LigD) ALSL_1248 PF01068 ATP dependent DNA ligase domain ALSL_1248 PF04679 ATP dependent DNA ligase C terminal region ALSL_1249 PF04679 ATP dependent DNA ligase C terminal region ALSL_1249 PF01068 ATP dependent DNA ligase domain ALSL_1249 PF13298 DNA polymerase Ligase (LigD) ALSL_1250 PF02735 Ku70/Ku80 beta-barrel domain ALSL_1251 PF00171 Aldehyde dehydrogenase family ALSL_1252 PF00753 Metallo-beta-lactamase superfamily ALSL_1253 PF00171 Aldehyde dehydrogenase family ALSL_1257 PF00924 Mechanosensitive ion channel ALSL_1257 PF12795 Mechanosensitive ion channel porin domain ALSL_1257 PF12794 Mechanosensitive ion channel inner membrane domain 1 ALSL_1258 PF04493 Endonuclease V ALSL_1260 PF14437 MafB19-like deaminase ALSL_1261 PF02146 Sir2 family ALSL_1265 PF03781 Sulfatase-modifying factor enzyme 1 ALSL_1265 PF12867 DinB superfamily ALSL_1267 PF08468 Methyltransferase small domain N-terminal ALSL_1267 PF05175 Methyltransferase small domain ALSL_1268 PF01479 S4 domain ALSL_1268 PF00849 RNA pseudouridylate synthase ALSL_1269 PF00085 Thioredoxin ALSL_1270 PF13361 UvrD-like helicase C-terminal domain ALSL_1270 PF12705 PD-(D/E)XK nuclease superfamily ALSL_1270 PF00580 UvrD/REP helicase N-terminal domain ALSL_1271 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALSL_1275 PF07715 TonB-dependent Receptor Plug Domain ALSL_1275 PF07660 Secretin and TonB N terminus short domain ALSL_1275 PF00593 TonB dependent receptor ALSL_1277 PF01609 Transposase DDE domain ALSL_1277 PF05598 Transposase domain (DUF772) ALSL_1278 PF14532 Sigma-54 interaction domain ALSL_1278 PF00072 Response regulator receiver domain ALSL_1278 PF02954 Bacterial regulatory protein, Fis family ALSL_1279 PF00072 Response regulator receiver domain ALSL_1279 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1279 PF13426 PAS domain ALSL_1281 PF16177 Acetyl-coenzyme A synthetase N-terminus ALSL_1281 PF13193 AMP-binding enzyme C-terminal domain ALSL_1281 PF00501 AMP-binding enzyme ALSL_1283 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_1283 PF13192 Thioredoxin domain ALSL_1284 PF00578 AhpC/TSA family ALSL_1284 PF10417 C-terminal domain of 1-Cys peroxiredoxin ALSL_1285 PF04542 Sigma-70 region 2 ALSL_1285 PF08281 Sigma-70, region 4 ALSL_1287 PF13180 PDZ domain ALSL_1288 PF00444 Ribosomal protein L36 ALSL_1289 PF00348 Polyprenyl synthetase ALSL_1290 PF02609 Exonuclease VII small subunit ALSL_1291 PF11734 TilS substrate C-terminal domain ALSL_1291 PF01171 PP-loop family ALSL_1291 PF09179 TilS substrate binding domain ALSL_1292 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit ALSL_1293 PF02016 LD-carboxypeptidase N-terminal domain ALSL_1293 PF17676 LD-carboxypeptidase C-terminal domain ALSL_1294 PF00885 6,7-dimethyl-8-ribityllumazine synthase ALSL_1295 PF01029 NusB family ALSL_1296 PF00586 AIR synthase related protein, N-terminal domain ALSL_1296 PF02769 AIR synthase related protein, C-terminal domain ALSL_1297 PF04608 Phosphatidylglycerophosphatase A ALSL_1299 PF00199 Catalase ALSL_1299 PF06628 Catalase-related immune-responsive ALSL_1299 PF18011 C-terminal domain found in long catalases ALSL_1303 PF00005 ABC transporter ALSL_1303 PF17755 UvrA DNA-binding domain ALSL_1303 PF17760 UvrA interaction domain ALSL_1305 PF00829 Ribosomal prokaryotic L21 protein ALSL_1306 PF01016 Ribosomal L27 protein ALSL_1307 PF01018 GTP1/OBG ALSL_1307 PF01926 50S ribosome-binding GTPase ALSL_1308 PF00593 TonB dependent receptor ALSL_1308 PF07715 TonB-dependent Receptor Plug Domain ALSL_1309 PF00873 AcrB/AcrD/AcrF family ALSL_1310 PF00529 HlyD membrane-fusion protein of T1SS ALSL_1310 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_1313 PF02447 GntP family permease ALSL_1314 PF04305 Protein of unknown function (DUF455) ALSL_1316 PF03129 Anticodon binding domain ALSL_1316 PF13393 Histidyl-tRNA synthetase ALSL_1317 PF00221 Aromatic amino acid lyase ALSL_1321 PF00300 Histidine phosphatase superfamily (branch 1) ALSL_1322 PF02875 Mur ligase family, glutamate ligase domain ALSL_1322 PF08245 Mur ligase middle domain ALSL_1326 PF01329 Pterin 4 alpha carbinolamine dehydratase ALSL_1327 PF01106 NifU-like domain ALSL_1328 PF00034 Cytochrome c ALSL_1329 PF00034 Cytochrome c ALSL_1331 PF00795 Carbon-nitrogen hydrolase ALSL_1332 PF04371 Porphyromonas-type peptidyl-arginine deiminase ALSL_1334 PF12848 ABC transporter ALSL_1334 PF00005 ABC transporter ALSL_1336 PF01368 DHH family ALSL_1336 PF02272 DHHA1 domain ALSL_1336 PF17768 RecJ OB domain ALSL_1338 PF13537 Glutamine amidotransferase domain ALSL_1338 PF00733 Asparagine synthase ALSL_1340 PF00472 RF-1 domain ALSL_1340 PF03462 PCRF domain ALSL_1341 PF01336 OB-fold nucleic acid binding domain ALSL_1341 PF00152 tRNA synthetases class II (D, K and N) ALSL_1343 PF03795 YCII-related domain ALSL_1345 PF02463 RecF/RecN/SMC N terminal domain ALSL_1346 PF04354 ZipA, C-terminal FtsZ-binding domain ALSL_1347 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase ALSL_1347 PF14572 Phosphoribosyl synthetase-associated domain ALSL_1348 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_1349 PF03796 DnaB-like helicase C terminal domain ALSL_1349 PF00772 DnaB-like helicase N terminal domain ALSL_1351 PF00149 Calcineurin-like phosphoesterase ALSL_1352 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALSL_1353 PF02541 Ppx/GppA phosphatase family ALSL_1354 PF02503 Polyphosphate kinase middle domain ALSL_1354 PF13089 Polyphosphate kinase N-terminal domain ALSL_1354 PF17941 Polyphosphate kinase C-terminal domain 1 ALSL_1354 PF13090 Polyphosphate kinase C-terminal domain 2 ALSL_1355 PF11808 Phosphate regulon sensor protein PhoR ALSL_1355 PF00989 PAS fold ALSL_1355 PF00512 His Kinase A (phospho-acceptor) domain ALSL_1355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1356 PF00486 Transcriptional regulatory protein, C terminal ALSL_1356 PF00072 Response regulator receiver domain ALSL_1357 PF01435 Peptidase family M48 ALSL_1357 PF13181 Tetratricopeptide repeat ALSL_1358 PF00462 Glutaredoxin ALSL_1360 PF00180 Isocitrate/isopropylmalate dehydrogenase ALSL_1362 PF08543 Phosphomethylpyrimidine kinase ALSL_1362 PF02581 Thiamine monophosphate synthase ALSL_1363 PF02562 PhoH-like protein ALSL_1363 PF13638 PIN domain ALSL_1364 PF00578 AhpC/TSA family ALSL_1366 PF00701 Dihydrodipicolinate synthetase family ALSL_1368 PF11953 Domain of unknown function (DUF3470) ALSL_1368 PF00037 4Fe-4S binding domain ALSL_1369 PF00691 OmpA family ALSL_1369 PF05736 OprF membrane domain ALSL_1377 PF03948 Ribosomal protein L9, C-terminal domain ALSL_1377 PF01281 Ribosomal protein L9, N-terminal domain ALSL_1378 PF01084 Ribosomal protein S18 ALSL_1379 PF01250 Ribosomal protein S6 ALSL_1380 PF01521 Iron-sulphur cluster biosynthesis ALSL_1381 PF01336 OB-fold nucleic acid binding domain ALSL_1381 PF00152 tRNA synthetases class II (D, K and N) ALSL_1385 PF00484 Carbonic anhydrase ALSL_1387 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain ALSL_1387 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_1388 PF01266 FAD dependent oxidoreductase ALSL_1389 PF00877 NlpC/P60 family ALSL_1390 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALSL_1391 PF07690 Major Facilitator Superfamily ALSL_1395 PF00106 short chain dehydrogenase ALSL_1396 PF00270 DEAD/DEAH box helicase ALSL_1396 PF03880 DbpA RNA binding domain ALSL_1396 PF00271 Helicase conserved C-terminal domain ALSL_1397 PF00009 Elongation factor Tu GTP binding domain ALSL_1398 PF01507 Phosphoadenosine phosphosulfate reductase family ALSL_1400 PF02585 GlcNAc-PI de-N-acetylase ALSL_1401 PF00266 Aminotransferase class-V ALSL_1402 PF01458 Uncharacterized protein family (UPF0051) ALSL_1403 PF00005 ABC transporter ALSL_1405 PF01458 Uncharacterized protein family (UPF0051) ALSL_1406 PF02082 Transcriptional regulator ALSL_1407 PF00543 Nitrogen regulatory protein P-II ALSL_1408 PF00909 Ammonium Transporter Family ALSL_1409 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALSL_1409 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALSL_1409 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALSL_1410 PF01636 Phosphotransferase enzyme family ALSL_1411 PF00483 Nucleotidyl transferase ALSL_1412 PF00691 OmpA family ALSL_1412 PF13677 Membrane MotB of proton-channel complex MotA/MotB ALSL_1413 PF01618 MotA/TolQ/ExbB proton channel family ALSL_1414 PF02355 Protein export membrane protein ALSL_1414 PF07549 SecD/SecF GG Motif ALSL_1415 PF02355 Protein export membrane protein ALSL_1415 PF07549 SecD/SecF GG Motif ALSL_1415 PF13721 SecD export protein N-terminal TM region ALSL_1416 PF02699 Preprotein translocase subunit ALSL_1417 PF02222 ATP-grasp domain ALSL_1417 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain ALSL_1418 PF00731 AIR carboxylase ALSL_1419 PF03966 Trm112p-like protein ALSL_1421 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain ALSL_1421 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain ALSL_1423 PF04909 Amidohydrolase ALSL_1424 PF07690 Major Facilitator Superfamily ALSL_1425 PF01266 FAD dependent oxidoreductase ALSL_1426 PF04386 Stringent starvation protein B ALSL_1427 PF00043 Glutathione S-transferase, C-terminal domain ALSL_1427 PF02798 Glutathione S-transferase, N-terminal domain ALSL_1428 PF02167 Cytochrome C1 family ALSL_1429 PF00033 Cytochrome b/b6/petB ALSL_1429 PF00032 Cytochrome b(C-terminal)/b6/petD ALSL_1430 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal ALSL_1430 PF00355 Rieske [2Fe-2S] domain ALSL_1431 PF13180 PDZ domain ALSL_1433 PF01872 RibD C-terminal domain ALSL_1433 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region ALSL_1435 PF00654 Voltage gated chloride channel ALSL_1436 PF03477 ATP cone domain ALSL_1437 PF00464 Serine hydroxymethyltransferase ALSL_1439 PF04452 RNA methyltransferase ALSL_1442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1442 PF01584 CheW-like domain ALSL_1442 PF02895 Signal transducing histidine kinase, homodimeric domain ALSL_1442 PF01584 CheW-like domain ALSL_1442 PF02895 Signal transducing histidine kinase, homodimeric domain ALSL_1442 PF00072 Response regulator receiver domain ALSL_1442 PF01627 Hpt domain ALSL_1442 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1442 PF01627 Hpt domain ALSL_1442 PF00072 Response regulator receiver domain ALSL_1443 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term ALSL_1443 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_1444 PF01584 CheW-like domain ALSL_1445 PF00072 Response regulator receiver domain ALSL_1446 PF00072 Response regulator receiver domain ALSL_1447 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain ALSL_1447 PF02951 Prokaryotic glutathione synthetase, N-terminal domain ALSL_1450 PF02622 Uncharacterized ACR, COG1678 ALSL_1451 PF03652 Holliday junction resolvase ALSL_1452 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain ALSL_1452 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain ALSL_1455 PF00437 Type II/IV secretion system protein ALSL_1456 PF00437 Type II/IV secretion system protein ALSL_1457 PF03807 NADP oxidoreductase coenzyme F420-dependent ALSL_1457 PF14748 Pyrroline-5-carboxylate reductase dimerisation ALSL_1458 PF02325 YGGT family ALSL_1459 PF11867 Domain of unknown function (DUF3387) ALSL_1459 PF18766 SWI2/SNF2 ATPase ALSL_1459 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) ALSL_1461 PF01420 Type I restriction modification DNA specificity domain ALSL_1462 PF02661 Fic/DOC family ALSL_1462 PF13784 Fic/DOC family N-terminal ALSL_1463 PF02384 N-6 DNA Methylase ALSL_1465 PF01894 Uncharacterised protein family UPF0047 ALSL_1466 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region ALSL_1466 PF01243 Pyridoxamine 5'-phosphate oxidase ALSL_1467 PF00485 Phosphoribulokinase / Uridine kinase family ALSL_1469 PF01202 Shikimate kinase ALSL_1470 PF01761 3-dehydroquinate synthase ALSL_1471 PF02684 Lipid-A-disaccharide synthetase ALSL_1472 PF01351 Ribonuclease HII ALSL_1474 PF01566 Natural resistance-associated macrophage protein ALSL_1475 PF07733 Bacterial DNA polymerase III alpha NTPase domain ALSL_1475 PF01336 OB-fold nucleic acid binding domain ALSL_1475 PF14579 Helix-hairpin-helix motif ALSL_1475 PF02811 PHP domain ALSL_1475 PF17657 Bacterial DNA polymerase III alpha subunit finger domain ALSL_1476 PF01702 Queuine tRNA-ribosyltransferase ALSL_1477 PF02547 Queuosine biosynthesis protein ALSL_1478 PF00196 Bacterial regulatory proteins, luxR family ALSL_1478 PF00072 Response regulator receiver domain ALSL_1479 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1479 PF07730 Histidine kinase ALSL_1481 PF00005 ABC transporter ALSL_1486 PF00561 alpha/beta hydrolase fold ALSL_1487 PF01565 FAD binding domain ALSL_1487 PF02913 FAD linked oxidases, C-terminal domain ALSL_1488 PF00875 DNA photolyase ALSL_1488 PF03441 FAD binding domain of DNA photolyase ALSL_1489 PF00563 EAL domain ALSL_1489 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1489 PF03707 Bacterial signalling protein N terminal repeat ALSL_1489 PF13188 PAS domain ALSL_1491 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALSL_1491 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALSL_1491 PF01842 ACT domain ALSL_1494 PF13091 PLD-like domain ALSL_1494 PF13396 Phospholipase_D-nuclease N-terminal ALSL_1498 PF01510 N-acetylmuramoyl-L-alanine amidase ALSL_1499 PF00135 Carboxylesterase family ALSL_1500 PF02080 TrkA-C domain ALSL_1500 PF03600 Citrate transporter ALSL_1504 PF02805 Metal binding domain of Ada ALSL_1504 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain ALSL_1504 PF12833 Helix-turn-helix domain ALSL_1504 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain ALSL_1505 PF00892 EamA-like transporter family ALSL_1507 PF05275 Copper resistance protein B precursor (CopB) ALSL_1508 PF00394 Multicopper oxidase ALSL_1508 PF07732 Multicopper oxidase ALSL_1508 PF07731 Multicopper oxidase ALSL_1513 PF00892 EamA-like transporter family ALSL_1514 PF02667 Short chain fatty acid transporter ALSL_1519 PF00117 Glutamine amidotransferase class-I ALSL_1519 PF00958 GMP synthase C terminal domain ALSL_1519 PF02540 NAD synthase ALSL_1520 PF00571 CBS domain ALSL_1520 PF00478 IMP dehydrogenase / GMP reductase domain ALSL_1521 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain ALSL_1521 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain ALSL_1523 PF00899 ThiF family ALSL_1524 PF01926 50S ribosome-binding GTPase ALSL_1524 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal ALSL_1525 PF01011 PQQ enzyme repeat ALSL_1525 PF13360 PQQ-like domain ALSL_1529 PF04055 Radical SAM superfamily ALSL_1530 PF00334 Nucleoside diphosphate kinase ALSL_1532 PF00378 Enoyl-CoA hydratase/isomerase ALSL_1532 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALSL_1532 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALSL_1533 PF00108 Thiolase, N-terminal domain ALSL_1533 PF02803 Thiolase, C-terminal domain ALSL_1535 PF00072 Response regulator receiver domain ALSL_1535 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1536 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_1536 PF12002 MgsA AAA+ ATPase C terminal ALSL_1536 PF16193 AAA C-terminal domain ALSL_1538 PF02403 Seryl-tRNA synthetase N-terminal domain ALSL_1538 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALSL_1548 PF13356 Arm DNA-binding domain ALSL_1548 PF00589 Phage integrase family ALSL_1549 PF00156 Phosphoribosyl transferase domain ALSL_1550 PF02674 Colicin V production protein ALSL_1552 PF03548 Outer membrane lipoprotein carrier protein LolA ALSL_1553 PF10609 NUBPL iron-transfer P-loop NTPase ALSL_1555 PF00571 CBS domain ALSL_1555 PF03471 Transporter associated domain ALSL_1557 PF04055 Radical SAM superfamily ALSL_1557 PF01938 TRAM domain ALSL_1557 PF00919 Uncharacterized protein family UPF0004 ALSL_1559 PF02562 PhoH-like protein ALSL_1560 PF02130 Uncharacterized protein family UPF0054 ALSL_1563 PF00486 Transcriptional regulatory protein, C terminal ALSL_1563 PF00072 Response regulator receiver domain ALSL_1564 PF00512 His Kinase A (phospho-acceptor) domain ALSL_1564 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1566 PF00892 EamA-like transporter family ALSL_1567 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALSL_1570 PF00202 Aminotransferase class-III ALSL_1573 PF00583 Acetyltransferase (GNAT) family ALSL_1574 PF09115 DNA polymerase III, delta subunit, C terminal ALSL_1575 PF02223 Thymidylate kinase ALSL_1576 PF02618 YceG-like family ALSL_1577 PF01063 Amino-transferase class IV ALSL_1578 PF00425 chorismate binding enzyme ALSL_1578 PF04715 Anthranilate synthase component I, N terminal region ALSL_1579 PF00109 Beta-ketoacyl synthase, N-terminal domain ALSL_1579 PF02801 Beta-ketoacyl synthase, C-terminal domain ALSL_1580 PF00550 Phosphopantetheine attachment site ALSL_1582 PF00698 Acyl transferase domain ALSL_1587 PF03358 NADPH-dependent FMN reductase ALSL_1588 PF02780 Transketolase, C-terminal domain ALSL_1588 PF02779 Transketolase, pyrimidine binding domain ALSL_1588 PF13292 1-deoxy-D-xylulose-5-phosphate synthase ALSL_1589 PF00043 Glutathione S-transferase, C-terminal domain ALSL_1589 PF13417 Glutathione S-transferase, N-terminal domain ALSL_1590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_1590 PF02770 Acyl-CoA dehydrogenase, middle domain ALSL_1590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALSL_1591 PF00892 EamA-like transporter family ALSL_1593 PF01513 ATP-NAD kinase ALSL_1594 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain ALSL_1594 PF00205 Thiamine pyrophosphate enzyme, central domain ALSL_1594 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain ALSL_1597 PF06779 Uncharacterised MFS-type transporter YbfB ALSL_1598 PF05088 Bacterial NAD-glutamate dehydrogenase ALSL_1599 PF00563 EAL domain ALSL_1599 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1599 PF03707 Bacterial signalling protein N terminal repeat ALSL_1602 PF18693 TRAM domain ALSL_1602 PF00919 Uncharacterized protein family UPF0004 ALSL_1602 PF04055 Radical SAM superfamily ALSL_1603 PF01738 Dienelactone hydrolase family ALSL_1606 PF00692 dUTPase ALSL_1607 PF09397 Ftsk gamma domain ALSL_1607 PF17854 FtsK alpha domain ALSL_1607 PF13491 4TM region of DNA translocase FtsK/SpoIIIE ALSL_1607 PF01580 FtsK/SpoIIIE family ALSL_1608 PF05222 Alanine dehydrogenase/PNT, N-terminal domain ALSL_1608 PF01262 Alanine dehydrogenase/PNT, C-terminal domain ALSL_1609 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_1611 PF03588 Leucyl/phenylalanyl-tRNA protein transferase ALSL_1613 PF00107 Zinc-binding dehydrogenase ALSL_1613 PF13823 Alcohol dehydrogenase GroES-associated ALSL_1613 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_1615 PF13090 Polyphosphate kinase C-terminal domain 2 ALSL_1615 PF02503 Polyphosphate kinase middle domain ALSL_1615 PF17941 Polyphosphate kinase C-terminal domain 1 ALSL_1615 PF13089 Polyphosphate kinase N-terminal domain ALSL_1618 PF00723 Glycosyl hydrolases family 15 ALSL_1618 PF09137 Glucodextranase, domain N ALSL_1619 PF05230 MASE2 domain ALSL_1619 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1623 PF13426 PAS domain ALSL_1623 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1623 PF00072 Response regulator receiver domain ALSL_1627 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain ALSL_1627 PF00056 lactate/malate dehydrogenase, NAD binding domain ALSL_1628 PF00155 Aminotransferase class I and II ALSL_1629 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD ALSL_1632 PF10605 3HB-oligomer hydrolase (3HBOH) ALSL_1633 PF00196 Bacterial regulatory proteins, luxR family ALSL_1633 PF00072 Response regulator receiver domain ALSL_1634 PF00672 HAMP domain ALSL_1634 PF01627 Hpt domain ALSL_1634 PF00512 His Kinase A (phospho-acceptor) domain ALSL_1634 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1634 PF00072 Response regulator receiver domain ALSL_1636 PF07715 TonB-dependent Receptor Plug Domain ALSL_1636 PF00593 TonB dependent receptor ALSL_1639 PF00356 Bacterial regulatory proteins, lacI family ALSL_1640 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_1640 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_1640 PF01610 Transposase ALSL_1642 PF00248 Aldo/keto reductase family ALSL_1643 PF00842 Alanine racemase, C-terminal domain ALSL_1643 PF01168 Alanine racemase, N-terminal domain ALSL_1646 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALSL_1646 PF01411 tRNA synthetases class II (A) ALSL_1646 PF02272 DHHA1 domain ALSL_1647 PF02631 RecX family ALSL_1649 PF00154 recA bacterial DNA recombination protein ALSL_1650 PF02464 Competence-damaged protein ALSL_1651 PF05736 OprF membrane domain ALSL_1651 PF00691 OmpA family ALSL_1653 PF03972 MmgE/PrpD family ALSL_1655 PF03741 Integral membrane protein TerC family ALSL_1656 PF00285 Citrate synthase, C-terminal domain ALSL_1660 PF00325 Bacterial regulatory proteins, crp family ALSL_1660 PF00027 Cyclic nucleotide-binding domain ALSL_1662 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase ALSL_1663 PF01205 Uncharacterized protein family UPF0029 ALSL_1664 PF03169 OPT oligopeptide transporter protein ALSL_1665 PF00005 ABC transporter ALSL_1665 PF00664 ABC transporter transmembrane region ALSL_1666 PF07055 Enoyl reductase FAD binding domain ALSL_1666 PF12242 NAD(P)H binding domain of trans-2-enoyl-CoA reductase ALSL_1666 PF12241 Trans-2-enoyl-CoA reductase catalytic region ALSL_1667 PF00128 Alpha amylase, catalytic domain ALSL_1668 PF02446 4-alpha-glucanotransferase ALSL_1669 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALSL_1669 PF11941 Domain of unknown function (DUF3459) ALSL_1669 PF00128 Alpha amylase, catalytic domain ALSL_1670 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALSL_1670 PF00128 Alpha amylase, catalytic domain ALSL_1671 PF02806 Alpha amylase, C-terminal all-beta domain ALSL_1671 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) ALSL_1671 PF00128 Alpha amylase, catalytic domain ALSL_1672 PF16657 Maltogenic Amylase, C-terminal domain ALSL_1672 PF00128 Alpha amylase, catalytic domain ALSL_1673 PF00128 Alpha amylase, catalytic domain ALSL_1673 PF11896 Domain of unknown function (DUF3416) ALSL_1676 PF01180 Dihydroorotate dehydrogenase ALSL_1677 PF01565 FAD binding domain ALSL_1677 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain ALSL_1678 PF04551 GcpE protein ALSL_1679 PF04945 YHS domain ALSL_1681 PF02687 FtsX-like permease family ALSL_1681 PF12704 MacB-like periplasmic core domain ALSL_1682 PF00005 ABC transporter ALSL_1683 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_1684 PF01557 Fumarylacetoacetate (FAA) hydrolase family ALSL_1685 PF01741 Large-conductance mechanosensitive channel, MscL ALSL_1690 PF00216 Bacterial DNA-binding protein ALSL_1691 PF03484 tRNA synthetase B5 domain ALSL_1691 PF01588 Putative tRNA binding domain ALSL_1691 PF03147 Ferredoxin-fold anticodon binding domain ALSL_1691 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain ALSL_1691 PF03483 B3/4 domain ALSL_1692 PF01409 tRNA synthetases class II core domain (F) ALSL_1692 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain ALSL_1693 PF00453 Ribosomal protein L20 ALSL_1694 PF01632 Ribosomal protein L35 ALSL_1695 PF00707 Translation initiation factor IF-3, C-terminal domain ALSL_1695 PF05198 Translation initiation factor IF-3, N-terminal domain ALSL_1696 PF03129 Anticodon binding domain ALSL_1696 PF02824 TGS domain ALSL_1696 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALSL_1696 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain ALSL_1697 PF01370 NAD dependent epimerase/dehydratase family ALSL_1701 PF04851 Type III restriction enzyme, res subunit ALSL_1701 PF02151 UvrB/uvrC motif ALSL_1701 PF12344 Ultra-violet resistance protein B ALSL_1701 PF00271 Helicase conserved C-terminal domain ALSL_1701 PF17757 UvrB interaction domain ALSL_1704 PF14793 Pyrimidine/purine nucleotide 5'-monophosphate nucleosidases ALSL_1704 PF11892 Domain of unknown function (DUF3412) ALSL_1704 PF03641 Possible lysine decarboxylase ALSL_1705 PF00593 TonB dependent receptor ALSL_1707 PF01914 MarC family integral membrane protein ALSL_1709 PF00462 Glutaredoxin ALSL_1710 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain ALSL_1710 PF02777 Iron/manganese superoxide dismutases, C-terminal domain ALSL_1711 PF00482 Type II secretion system (T2SS), protein F ALSL_1712 PF01478 Type IV leader peptidase family ALSL_1712 PF06750 Bacterial Peptidase A24 N-terminal domain ALSL_1713 PF01121 Dephospho-CoA kinase ALSL_1714 PF00672 HAMP domain ALSL_1714 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1714 PF00512 His Kinase A (phospho-acceptor) domain ALSL_1715 PF00486 Transcriptional regulatory protein, C terminal ALSL_1715 PF00072 Response regulator receiver domain ALSL_1716 PF13472 GDSL-like Lipase/Acylhydrolase family ALSL_1717 PF00005 ABC transporter ALSL_1719 PF03600 Citrate transporter ALSL_1721 PF03819 MazG nucleotide pyrophosphohydrolase domain ALSL_1722 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) ALSL_1722 PF03129 Anticodon binding domain ALSL_1722 PF04073 Aminoacyl-tRNA editing domain ALSL_1723 PF00816 H-NS histone family ALSL_1726 PF01145 SPFH domain / Band 7 family ALSL_1726 PF16200 C-terminal region of band_7 ALSL_1727 PF00128 Alpha amylase, catalytic domain ALSL_1732 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain ALSL_1732 PF02769 AIR synthase related protein, C-terminal domain ALSL_1732 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal ALSL_1733 PF10411 Disulfide bond isomerase protein N-terminus ALSL_1733 PF13098 Thioredoxin-like domain ALSL_1734 PF02899 Phage integrase, N-terminal SAM-like domain ALSL_1734 PF00589 Phage integrase family ALSL_1738 PF06508 Queuosine biosynthesis protein QueC ALSL_1739 PF04055 Radical SAM superfamily ALSL_1741 PF00691 OmpA family ALSL_1742 PF04052 TolB amino-terminal domain ALSL_1742 PF07676 WD40-like Beta Propeller Repeat ALSL_1744 PF02472 Biopolymer transport protein ExbD/TolR ALSL_1745 PF01618 MotA/TolQ/ExbB proton channel family ALSL_1746 PF03061 Thioesterase superfamily ALSL_1747 PF05491 RuvB C-terminal winged helix domain ALSL_1747 PF17864 RuvB AAA lid domain ALSL_1747 PF05496 Holliday junction DNA helicase RuvB P-loop domain ALSL_1749 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_1749 PF17862 AAA+ lid domain ALSL_1749 PF06480 FtsH Extracellular ALSL_1749 PF01434 Peptidase family M41 ALSL_1750 PF01053 Cys/Met metabolism PLP-dependent enzyme ALSL_1751 PF05192 MutS domain III ALSL_1751 PF05190 MutS family domain IV ALSL_1751 PF00488 MutS domain V ALSL_1751 PF01624 MutS domain I ALSL_1751 PF05188 MutS domain II ALSL_1752 PF01979 Amidohydrolase family ALSL_1753 PF01132 Elongation factor P (EF-P) OB domain ALSL_1753 PF09285 Elongation factor P, C-terminal ALSL_1753 PF08207 Elongation factor P (EF-P) KOW-like domain ALSL_1754 PF04055 Radical SAM superfamily ALSL_1755 PF00563 EAL domain ALSL_1755 PF03707 Bacterial signalling protein N terminal repeat ALSL_1755 PF00990 Diguanylate cyclase, GGDEF domain ALSL_1756 PF01258 Prokaryotic dksA/traR C4-type zinc finger ALSL_1757 PF01809 Putative membrane protein insertion efficiency factor ALSL_1758 PF01979 Amidohydrolase family ALSL_1760 PF02649 Type I GTP cyclohydrolase folE2 ALSL_1762 PF13419 Haloacid dehalogenase-like hydrolase ALSL_1765 PF02401 LytB protein ALSL_1766 PF01252 Signal peptidase (SPase) II ALSL_1767 PF08264 Anticodon-binding domain of tRNA ALSL_1767 PF06827 Zinc finger found in FPG and IleRS ALSL_1767 PF00133 tRNA synthetases class I (I, L, M and V) ALSL_1768 PF01687 Riboflavin kinase ALSL_1768 PF06574 FAD synthetase ALSL_1769 PF03023 Lipid II flippase MurJ ALSL_1770 PF01649 Ribosomal protein S20 ALSL_1771 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_1771 PF02770 Acyl-CoA dehydrogenase, middle domain ALSL_1771 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALSL_1772 PF13847 Methyltransferase domain ALSL_1772 PF03551 Transcriptional regulator PadR-like family ALSL_1773 PF02310 B12 binding domain ALSL_1773 PF02607 B12 binding domain ALSL_1773 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALSL_1773 PF02574 Homocysteine S-methyltransferase ALSL_1773 PF00809 Pterin binding enzyme ALSL_1774 PF00809 Pterin binding enzyme ALSL_1774 PF02965 Vitamin B12 dependent methionine synthase, activation domain ALSL_1774 PF02607 B12 binding domain ALSL_1774 PF02310 B12 binding domain ALSL_1774 PF02574 Homocysteine S-methyltransferase ALSL_1775 PF02684 Lipid-A-disaccharide synthetase ALSL_1775 PF07578 Lipid A Biosynthesis N-terminal domain ALSL_1778 PF05567 Neisseria PilC beta-propeller domain ALSL_1784 PF13396 Phospholipase_D-nuclease N-terminal ALSL_1784 PF13091 PLD-like domain ALSL_1785 PF13193 AMP-binding enzyme C-terminal domain ALSL_1785 PF00501 AMP-binding enzyme ALSL_1787 PF02616 Segregation and condensation protein ScpA ALSL_1788 PF04079 Segregation and condensation complex subunit ScpB ALSL_1789 PF01479 S4 domain ALSL_1789 PF00849 RNA pseudouridylate synthase ALSL_1790 PF00795 Carbon-nitrogen hydrolase ALSL_1791 PF00155 Aminotransferase class I and II ALSL_1793 PF17137 Domain of unknown function (DUF5110) ALSL_1793 PF16338 Domain of unknown function (DUF4968) ALSL_1793 PF01055 Glycosyl hydrolases family 31 ALSL_1793 PF13802 Galactose mutarotase-like ALSL_1796 PF00753 Metallo-beta-lactamase superfamily ALSL_1796 PF16123 Hydroxyacylglutathione hydrolase C-terminus ALSL_1798 PF01075 Glycosyltransferase family 9 (heptosyltransferase) ALSL_1800 PF00083 Sugar (and other) transporter ALSL_1800 PF07690 Major Facilitator Superfamily ALSL_1801 PF01609 Transposase DDE domain ALSL_1801 PF05598 Transposase domain (DUF772) ALSL_1802 PF01245 Ribosomal protein L19 ALSL_1803 PF01746 tRNA (Guanine-1)-methyltransferase ALSL_1804 PF01782 RimM N-terminal domain ALSL_1804 PF05239 PRC-barrel domain ALSL_1805 PF00886 Ribosomal protein S16 ALSL_1806 PF02978 Signal peptide binding domain ALSL_1806 PF02881 SRP54-type protein, helical bundle domain ALSL_1806 PF00448 SRP54-type protein, GTPase domain ALSL_1807 PF01578 Cytochrome C assembly protein ALSL_1808 PF18073 Rubredoxin metal binding domain ALSL_1809 PF00581 Rhodanese-like domain ALSL_1810 PF00293 NUDIX domain ALSL_1812 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALSL_1812 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ALSL_1813 PF00378 Enoyl-CoA hydratase/isomerase ALSL_1815 PF01119 DNA mismatch repair protein, C-terminal domain ALSL_1815 PF08676 MutL C terminal dimerisation domain ALSL_1816 PF01520 N-acetylmuramoyl-L-alanine amidase ALSL_1817 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE ALSL_1818 PF03853 YjeF-related protein N-terminus ALSL_1818 PF01256 Carbohydrate kinase ALSL_1819 PF08331 Domain of unknown function (DUF1730) ALSL_1821 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain ALSL_1821 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II ALSL_1821 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I ALSL_1821 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III ALSL_1822 PF00809 Pterin binding enzyme ALSL_1823 PF00929 Exonuclease ALSL_1824 PF00929 Exonuclease ALSL_1824 PF08411 Exonuclease C-terminal ALSL_1825 PF00083 Sugar (and other) transporter ALSL_1825 PF08946 Osmosensory transporter coiled coil ALSL_1829 PF02310 B12 binding domain ALSL_1829 PF01642 Methylmalonyl-CoA mutase ALSL_1831 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain ALSL_1831 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase ALSL_1832 PF02771 Acyl-CoA dehydrogenase, N-terminal domain ALSL_1832 PF02770 Acyl-CoA dehydrogenase, middle domain ALSL_1832 PF00441 Acyl-CoA dehydrogenase, C-terminal domain ALSL_1833 PF00108 Thiolase, N-terminal domain ALSL_1833 PF02803 Thiolase, C-terminal domain ALSL_1835 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_1835 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_1835 PF01610 Transposase ALSL_1836 PF01039 Carboxyl transferase domain ALSL_1838 PF07664 Ferrous iron transport protein B C terminus ALSL_1838 PF02421 Ferrous iron transport protein B ALSL_1838 PF07670 Nucleoside recognition ALSL_1840 PF00378 Enoyl-CoA hydratase/isomerase ALSL_1843 PF03989 DNA gyrase C-terminal domain, beta-propeller ALSL_1843 PF00521 DNA gyrase/topoisomerase IV, subunit A ALSL_1848 PF01804 Penicillin amidase ALSL_1850 PF00848 Ring hydroxylating alpha subunit (catalytic domain) ALSL_1850 PF00355 Rieske [2Fe-2S] domain ALSL_1851 PF00361 Proton-conducting membrane transporter ALSL_1852 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus ALSL_1852 PF00361 Proton-conducting membrane transporter ALSL_1853 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus ALSL_1853 PF00361 Proton-conducting membrane transporter ALSL_1854 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L ALSL_1855 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 ALSL_1856 PF12838 4Fe-4S dicluster domain ALSL_1857 PF00146 NADH dehydrogenase ALSL_1858 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal ALSL_1858 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region ALSL_1858 PF00384 Molybdopterin oxidoreductase ALSL_1859 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region ALSL_1859 PF10531 SLBB domain ALSL_1859 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit ALSL_1861 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit ALSL_1862 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit ALSL_1863 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit ALSL_1864 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 ALSL_1865 PF00535 Glycosyl transferase family 2 ALSL_1866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1866 PF00183 Hsp90 protein ALSL_1867 PF01435 Peptidase family M48 ALSL_1868 PF00749 tRNA synthetases class I (E and Q), catalytic domain ALSL_1869 PF00106 short chain dehydrogenase ALSL_1870 PF00899 ThiF family ALSL_1871 PF02542 YgbB family ALSL_1872 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase ALSL_1873 PF04977 Septum formation initiator ALSL_1874 PF00113 Enolase, C-terminal TIM barrel domain ALSL_1874 PF03952 Enolase, N-terminal domain ALSL_1876 PF00793 DAHP synthetase I family ALSL_1877 PF06418 CTP synthase N-terminus ALSL_1877 PF00117 Glutamine amidotransferase class-I ALSL_1879 PF00204 DNA gyrase B ALSL_1879 PF00986 DNA gyrase B subunit, carboxyl terminus ALSL_1879 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_1879 PF01751 Toprim domain ALSL_1880 PF06052 3-hydroxyanthranilic acid dioxygenase ALSL_1882 PF13520 Amino acid permease ALSL_1883 PF13520 Amino acid permease ALSL_1884 PF03573 outer membrane porin, OprD family ALSL_1885 PF01355 High potential iron-sulfur protein ALSL_1886 PF00596 Class II Aldolase and Adducin N-terminal domain ALSL_1887 PF03079 ARD/ARD' family ALSL_1890 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase ALSL_1890 PF01502 Phosphoribosyl-AMP cyclohydrolase ALSL_1891 PF00977 Histidine biosynthesis protein ALSL_1892 PF00977 Histidine biosynthesis protein ALSL_1893 PF00117 Glutamine amidotransferase class-I ALSL_1894 PF00475 Imidazoleglycerol-phosphate dehydratase ALSL_1895 PF00155 Aminotransferase class I and II ALSL_1896 PF00815 Histidinol dehydrogenase ALSL_1897 PF01634 ATP phosphoribosyltransferase ALSL_1897 PF08029 HisG, C-terminal domain ALSL_1899 PF02606 Tetraacyldisaccharide-1-P 4'-kinase ALSL_1900 PF00664 ABC transporter transmembrane region ALSL_1900 PF00005 ABC transporter ALSL_1901 PF02472 Biopolymer transport protein ExbD/TolR ALSL_1902 PF01618 MotA/TolQ/ExbB proton channel family ALSL_1903 PF03772 Competence protein ALSL_1903 PF00753 Metallo-beta-lactamase superfamily ALSL_1903 PF13567 Domain of unknown function (DUF4131) ALSL_1904 PF00005 ABC transporter ALSL_1905 PF02687 FtsX-like permease family ALSL_1905 PF12704 MacB-like periplasmic core domain ALSL_1907 PF03937 Flavinator of succinate dehydrogenase ALSL_1908 PF13085 2Fe-2S iron-sulfur cluster binding domain ALSL_1909 PF02910 Fumarate reductase flavoprotein C-term ALSL_1909 PF00890 FAD binding domain ALSL_1910 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALSL_1911 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit ALSL_1913 PF01571 Aminomethyltransferase folate-binding domain ALSL_1917 PF01026 TatD related DNase ALSL_1918 PF07879 PHB/PHA accumulation regulator DNA-binding domain ALSL_1918 PF05233 PHB accumulation regulatory domain ALSL_1919 PF01494 FAD binding domain ALSL_1923 PF00005 ABC transporter ALSL_1924 PF03379 CcmB protein ALSL_1925 PF01578 Cytochrome C assembly protein ALSL_1927 PF03100 CcmE ALSL_1928 PF01578 Cytochrome C assembly protein ALSL_1928 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal ALSL_1929 PF08534 Redoxin ALSL_1930 PF03918 Cytochrome C biogenesis protein ALSL_1932 PF00561 alpha/beta hydrolase fold ALSL_1935 PF03781 Sulfatase-modifying factor enzyme 1 ALSL_1936 PF00570 HRDC domain ALSL_1936 PF01612 3'-5' exonuclease ALSL_1938 PF12626 Polymerase A arginine-rich C-terminus ALSL_1938 PF01743 Poly A polymerase head domain ALSL_1938 PF12627 Probable RNA and SrmB- binding site of polymerase A ALSL_1939 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALSL_1940 PF02548 Ketopantoate hydroxymethyltransferase ALSL_1941 PF02569 Pantoate-beta-alanine ligase ALSL_1942 PF02261 Aspartate decarboxylase ALSL_1945 PF00106 short chain dehydrogenase ALSL_1946 PF00121 Triosephosphate isomerase ALSL_1947 PF03840 Preprotein translocase SecG subunit ALSL_1949 PF01625 Peptide methionine sulfoxide reductase ALSL_1950 PF01641 SelR domain ALSL_1951 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_1951 PF00107 Zinc-binding dehydrogenase ALSL_1952 PF01494 FAD binding domain ALSL_1953 PF01804 Penicillin amidase ALSL_1954 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain ALSL_1954 PF00378 Enoyl-CoA hydratase/isomerase ALSL_1954 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain ALSL_1956 PF04102 SlyX ALSL_1957 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain ALSL_1957 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain ALSL_1957 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain ALSL_1958 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase ALSL_1958 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase ALSL_1959 PF02254 TrkA-N domain ALSL_1959 PF00999 Sodium/hydrogen exchanger family ALSL_1964 PF03618 Kinase/pyrophosphorylase ALSL_1965 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain ALSL_1965 PF02896 PEP-utilising enzyme, TIM barrel domain ALSL_1965 PF00391 PEP-utilising enzyme, mobile domain ALSL_1967 PF01266 FAD dependent oxidoreductase ALSL_1968 PF00483 Nucleotidyl transferase ALSL_1969 PF02719 Polysaccharide biosynthesis protein ALSL_1970 PF00953 Glycosyl transferase family 4 ALSL_1970 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALSL_1971 PF18073 Rubredoxin metal binding domain ALSL_1978 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_1978 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_1978 PF01610 Transposase ALSL_1979 PF06480 FtsH Extracellular ALSL_1979 PF01434 Peptidase family M41 ALSL_1979 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_1979 PF17862 AAA+ lid domain ALSL_1980 PF01728 FtsJ-like methyltransferase ALSL_1981 PF01985 CRS1 / YhbY (CRM) domain ALSL_1982 PF04430 Protein of unknown function (DUF498/DUF598) ALSL_1983 PF01476 LysM domain ALSL_1983 PF01551 Peptidase family M23 ALSL_1986 PF01975 Survival protein SurE ALSL_1988 PF01142 tRNA pseudouridine synthase D (TruD) ALSL_1991 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALSL_1993 PF02347 Glycine cleavage system P-protein ALSL_1995 PF00709 Adenylosuccinate synthetase ALSL_1996 PF01145 SPFH domain / Band 7 family ALSL_1997 PF01145 SPFH domain / Band 7 family ALSL_1997 PF12221 Bacterial membrane protein N terminal ALSL_1998 PF01124 MAPEG family ALSL_2000 PF02545 Maf-like protein ALSL_2001 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain ALSL_2001 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain ALSL_2002 PF02590 Predicted SPOUT methyltransferase ALSL_2004 PF13442 Cytochrome C oxidase, cbb3-type, subunit III ALSL_2004 PF00034 Cytochrome c ALSL_2005 PF00034 Cytochrome c ALSL_2006 PF01425 Amidase ALSL_2007 PF01474 Class-II DAHP synthetase family ALSL_2008 PF02600 Disulfide bond formation protein DsbB ALSL_2009 PF01196 Ribosomal protein L17 ALSL_2010 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain ALSL_2010 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain ALSL_2010 PF01000 RNA polymerase Rpb3/RpoA insert domain ALSL_2011 PF01479 S4 domain ALSL_2011 PF00163 Ribosomal protein S4/S9 N-terminal domain ALSL_2012 PF00411 Ribosomal protein S11 ALSL_2013 PF00416 Ribosomal protein S13/S18 ALSL_2014 PF00344 SecY translocase ALSL_2015 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A ALSL_2016 PF00327 Ribosomal protein L30p/L7e ALSL_2017 PF00333 Ribosomal protein S5, N-terminal domain ALSL_2017 PF03719 Ribosomal protein S5, C-terminal domain ALSL_2018 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast ALSL_2019 PF00347 Ribosomal protein L6 ALSL_2020 PF00410 Ribosomal protein S8 ALSL_2021 PF00253 Ribosomal protein S14p/S29e ALSL_2022 PF00673 ribosomal L5P family C-terminus ALSL_2022 PF00281 Ribosomal protein L5 ALSL_2023 PF00467 KOW motif ALSL_2023 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 ALSL_2024 PF00238 Ribosomal protein L14p/L23e ALSL_2025 PF00366 Ribosomal protein S17 ALSL_2026 PF00831 Ribosomal L29 protein ALSL_2027 PF00252 Ribosomal protein L16p/L10e ALSL_2028 PF00189 Ribosomal protein S3, C-terminal domain ALSL_2028 PF07650 KH domain ALSL_2029 PF00237 Ribosomal protein L22p/L17e ALSL_2030 PF00203 Ribosomal protein S19 ALSL_2031 PF00181 Ribosomal Proteins L2, RNA binding domain ALSL_2031 PF03947 Ribosomal Proteins L2, C-terminal domain ALSL_2032 PF00276 Ribosomal protein L23 ALSL_2033 PF00573 Ribosomal protein L4/L1 family ALSL_2034 PF00297 Ribosomal protein L3 ALSL_2035 PF00338 Ribosomal protein S10p/S20e ALSL_2036 PF03143 Elongation factor Tu C-terminal domain ALSL_2036 PF03144 Elongation factor Tu domain 2 ALSL_2036 PF00009 Elongation factor Tu GTP binding domain ALSL_2038 PF00009 Elongation factor Tu GTP binding domain ALSL_2038 PF03144 Elongation factor Tu domain 2 ALSL_2038 PF00679 Elongation factor G C-terminus ALSL_2038 PF14492 Elongation Factor G, domain II ALSL_2038 PF03764 Elongation factor G, domain IV ALSL_2040 PF00177 Ribosomal protein S7p/S5e ALSL_2041 PF00164 Ribosomal protein S12/S23 ALSL_2042 PF05000 RNA polymerase Rpb1, domain 4 ALSL_2042 PF04998 RNA polymerase Rpb1, domain 5 ALSL_2042 PF04983 RNA polymerase Rpb1, domain 3 ALSL_2042 PF00623 RNA polymerase Rpb1, domain 2 ALSL_2042 PF04997 RNA polymerase Rpb1, domain 1 ALSL_2043 PF04563 RNA polymerase beta subunit ALSL_2043 PF04565 RNA polymerase Rpb2, domain 3 ALSL_2043 PF00562 RNA polymerase Rpb2, domain 6 ALSL_2043 PF04560 RNA polymerase Rpb2, domain 7 ALSL_2043 PF10385 RNA polymerase beta subunit external 1 domain ALSL_2043 PF04561 RNA polymerase Rpb2, domain 2 ALSL_2044 PF00542 Ribosomal protein L7/L12 C-terminal domain ALSL_2044 PF16320 Ribosomal protein L7/L12 dimerisation domain ALSL_2045 PF00466 Ribosomal protein L10 ALSL_2046 PF00687 Ribosomal protein L1p/L10e family ALSL_2047 PF00298 Ribosomal protein L11, RNA binding domain ALSL_2047 PF03946 Ribosomal protein L11, N-terminal domain ALSL_2048 PF02357 Transcription termination factor nusG ALSL_2048 PF00467 KOW motif ALSL_2049 PF00584 SecE/Sec61-gamma subunits of protein translocation complex ALSL_2051 PF03144 Elongation factor Tu domain 2 ALSL_2051 PF00009 Elongation factor Tu GTP binding domain ALSL_2051 PF03143 Elongation factor Tu C-terminal domain ALSL_2055 PF01112 Asparaginase ALSL_2058 PF07715 TonB-dependent Receptor Plug Domain ALSL_2058 PF00593 TonB dependent receptor ALSL_2059 PF11897 Protein of unknown function (DUF3417) ALSL_2059 PF00343 Carbohydrate phosphorylase ALSL_2060 PF00723 Glycosyl hydrolases family 15 ALSL_2061 PF02705 K+ potassium transporter ALSL_2062 PF01330 RuvA N terminal domain ALSL_2062 PF07499 RuvA, C-terminal domain ALSL_2063 PF02075 Crossover junction endodeoxyribonuclease RuvC ALSL_2064 PF01709 Transcriptional regulator ALSL_2066 PF00152 tRNA synthetases class II (D, K and N) ALSL_2066 PF02938 GAD domain ALSL_2066 PF01336 OB-fold nucleic acid binding domain ALSL_2068 PF07715 TonB-dependent Receptor Plug Domain ALSL_2068 PF00593 TonB dependent receptor ALSL_2069 PF00593 TonB dependent receptor ALSL_2069 PF07715 TonB-dependent Receptor Plug Domain ALSL_2070 PF07724 AAA domain (Cdc48 subfamily) ALSL_2070 PF17871 AAA lid domain ALSL_2070 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_2070 PF02861 Clp amino terminal domain, pathogenicity island component ALSL_2070 PF10431 C-terminal, D2-small domain, of ClpB protein ALSL_2071 PF01427 D-ala-D-ala dipeptidase ALSL_2073 PF01875 Memo-like protein ALSL_2074 PF01871 AMMECR1 ALSL_2076 PF03958 Bacterial type II/III secretion system short domain ALSL_2076 PF00263 Bacterial type II and III secretion system protein ALSL_2076 PF11741 AMIN domain ALSL_2076 PF07660 Secretin and TonB N terminus short domain ALSL_2081 PF02449 Beta-galactosidase ALSL_2081 PF17992 Agarase CBM like domain ALSL_2082 PF13520 Amino acid permease ALSL_2083 PF01610 Transposase ALSL_2083 PF13542 Helix-turn-helix domain of transposase family ISL3 ALSL_2083 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 ALSL_2084 PF13407 Periplasmic binding protein domain ALSL_2085 PF02653 Branched-chain amino acid transport system / permease component ALSL_2086 PF00005 ABC transporter ALSL_2093 PF00301 Rubredoxin ALSL_2094 PF02581 Thiamine monophosphate synthase ALSL_2095 PF00202 Aminotransferase class-III ALSL_2098 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily ALSL_2099 PF00202 Aminotransferase class-III ALSL_2101 PF01225 Mur ligase family, catalytic domain ALSL_2101 PF02875 Mur ligase family, glutamate ligase domain ALSL_2101 PF08245 Mur ligase middle domain ALSL_2103 PF00365 Phosphofructokinase ALSL_2104 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_2104 PF00672 HAMP domain ALSL_2104 PF02203 Tar ligand binding domain homologue ALSL_2105 PF03030 Inorganic H+ pyrophosphatase ALSL_2106 PF00326 Prolyl oligopeptidase family ALSL_2106 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain ALSL_2108 PF00719 Inorganic pyrophosphatase ALSL_2109 PF08240 Alcohol dehydrogenase GroES-like domain ALSL_2109 PF00107 Zinc-binding dehydrogenase ALSL_2111 PF13667 ThiC-associated domain ALSL_2111 PF01964 Radical SAM ThiC family ALSL_2115 PF02321 Outer membrane efflux protein ALSL_2116 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) ALSL_2124 PF17831 Pyruvate dehydrogenase E1 component middle domain ALSL_2124 PF00456 Transketolase, thiamine diphosphate binding domain ALSL_2126 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain ALSL_2126 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain ALSL_2128 PF08534 Redoxin ALSL_2130 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_2137 PF00109 Beta-ketoacyl synthase, N-terminal domain ALSL_2137 PF02801 Beta-ketoacyl synthase, C-terminal domain ALSL_2138 PF07977 FabA-like domain ALSL_2141 PF07732 Multicopper oxidase ALSL_2142 PF07196 Flagellin hook IN motif ALSL_2142 PF00669 Bacterial flagellin N-terminal helical region ALSL_2142 PF00700 Bacterial flagellin C-terminal helical region ALSL_2143 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family ALSL_2144 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALSL_2144 PF00437 Type II/IV secretion system protein ALSL_2149 PF00293 NUDIX domain ALSL_2150 PF00186 Dihydrofolate reductase ALSL_2151 PF00303 Thymidylate synthase ALSL_2153 PF01790 Prolipoprotein diacylglyceryl transferase ALSL_2156 PF04011 LemA family ALSL_2157 PF01219 Prokaryotic diacylglycerol kinase ALSL_2158 PF00854 POT family ALSL_2159 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2159 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2160 PF00072 Response regulator receiver domain ALSL_2161 PF01144 Coenzyme A transferase ALSL_2163 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase ALSL_2163 PF00925 GTP cyclohydrolase II ALSL_2164 PF00677 Lumazine binding domain ALSL_2165 PF02861 Clp amino terminal domain, pathogenicity island component ALSL_2165 PF17871 AAA lid domain ALSL_2165 PF10431 C-terminal, D2-small domain, of ClpB protein ALSL_2165 PF07724 AAA domain (Cdc48 subfamily) ALSL_2165 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_2166 PF02617 ATP-dependent Clp protease adaptor protein ClpS ALSL_2167 PF00293 NUDIX domain ALSL_2169 PF04356 Protein of unknown function (DUF489) ALSL_2170 PF00694 Aconitase C-terminal domain ALSL_2170 PF00330 Aconitase family (aconitate hydratase) ALSL_2172 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain ALSL_2172 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain ALSL_2172 PF01842 ACT domain ALSL_2173 PF00248 Aldo/keto reductase family ALSL_2174 PF01523 Putative modulator of DNA gyrase ALSL_2176 PF10150 Ribonuclease E/G family ALSL_2176 PF00575 S1 RNA binding domain ALSL_2179 PF00593 TonB dependent receptor ALSL_2179 PF07715 TonB-dependent Receptor Plug Domain ALSL_2180 PF00072 Response regulator receiver domain ALSL_2180 PF00486 Transcriptional regulatory protein, C terminal ALSL_2181 PF13493 Domain of unknown function (DUF4118) ALSL_2181 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2181 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2181 PF02702 Osmosensitive K+ channel His kinase sensor domain ALSL_2181 PF13492 GAF domain ALSL_2182 PF02669 K+-transporting ATPase, c chain ALSL_2185 PF03814 Potassium-transporting ATPase A subunit ALSL_2186 PF00578 AhpC/TSA family ALSL_2186 PF02683 Cytochrome C biogenesis protein transmembrane region ALSL_2186 PF17991 Thioredoxin like C-terminal domain ALSL_2187 PF01467 Cytidylyltransferase-like ALSL_2190 PF13603 Leucyl-tRNA synthetase, Domain 2 ALSL_2190 PF00133 tRNA synthetases class I (I, L, M and V) ALSL_2190 PF08264 Anticodon-binding domain of tRNA ALSL_2192 PF02470 MlaD protein ALSL_2193 PF04403 Paraquat-inducible protein A ALSL_2194 PF04403 Paraquat-inducible protein A ALSL_2195 PF00085 Thioredoxin ALSL_2198 PF00293 NUDIX domain ALSL_2200 PF13538 UvrD-like helicase C-terminal domain ALSL_2201 PF12705 PD-(D/E)XK nuclease superfamily ALSL_2201 PF00580 UvrD/REP helicase N-terminal domain ALSL_2201 PF13361 UvrD-like helicase C-terminal domain ALSL_2202 PF17946 RecC C-terminal domain ALSL_2204 PF00425 chorismate binding enzyme ALSL_2204 PF04715 Anthranilate synthase component I, N terminal region ALSL_2205 PF00834 Ribulose-phosphate 3 epimerase family ALSL_2206 PF05099 Tellurite resistance protein TerB ALSL_2206 PF00226 DnaJ domain ALSL_2207 PF00034 Cytochrome c ALSL_2208 PF01259 SAICAR synthetase ALSL_2211 PF00690 Cation transporter/ATPase, N-terminus ALSL_2211 PF00689 Cation transporting ATPase, C-terminus ALSL_2216 PF00317 Ribonucleotide reductase, all-alpha domain ALSL_2216 PF02867 Ribonucleotide reductase, barrel domain ALSL_2216 PF14528 LAGLIDADG-like domain ALSL_2216 PF08343 Ribonucleotide reductase N-terminal ALSL_2217 PF00595 PDZ domain ALSL_2217 PF13180 PDZ domain ALSL_2219 PF13419 Haloacid dehalogenase-like hydrolase ALSL_2220 PF00883 Cytosol aminopeptidase family, catalytic domain ALSL_2220 PF02789 Cytosol aminopeptidase family, N-terminal domain ALSL_2221 PF01433 Peptidase family M1 domain ALSL_2222 PF13193 AMP-binding enzyme C-terminal domain ALSL_2222 PF00501 AMP-binding enzyme ALSL_2226 PF04542 Sigma-70 region 2 ALSL_2226 PF08281 Sigma-70, region 4 ALSL_2229 PF07992 Pyridine nucleotide-disulphide oxidoreductase ALSL_2229 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster ALSL_2230 PF00310 Glutamine amidotransferases class-II ALSL_2230 PF01493 GXGXG motif ALSL_2230 PF01645 Conserved region in glutamate synthase ALSL_2230 PF04898 Glutamate synthase central domain ALSL_2232 PF01551 Peptidase family M23 ALSL_2233 PF03572 Peptidase family S41 ALSL_2233 PF13180 PDZ domain ALSL_2234 PF00902 Sec-independent protein translocase protein (TatC) ALSL_2235 PF02416 mttA/Hcf106 family ALSL_2236 PF02416 mttA/Hcf106 family ALSL_2238 PF00762 Ferrochelatase ALSL_2239 PF12697 Alpha/beta hydrolase family ALSL_2240 PF12679 ABC-2 family transporter protein ALSL_2241 PF00005 ABC transporter ALSL_2244 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain ALSL_2244 PF02753 Pili assembly chaperone PapD, C-terminal domain ALSL_2245 PF13953 PapC C-terminal domain ALSL_2245 PF13954 PapC N-terminal domain ALSL_2245 PF00577 Outer membrane usher protein ALSL_2248 PF00005 ABC transporter ALSL_2249 PF01061 ABC-2 type transporter ALSL_2250 PF00083 Sugar (and other) transporter ALSL_2251 PF00034 Cytochrome c ALSL_2253 PF09699 Doubled CXXCH motif (Paired_CXXCH_1) ALSL_2254 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_2254 PF03466 LysR substrate binding domain ALSL_2255 PF08482 ATP-dependent helicase C-terminal ALSL_2255 PF00271 Helicase conserved C-terminal domain ALSL_2255 PF04408 Helicase associated domain (HA2) ALSL_2255 PF00270 DEAD/DEAH box helicase ALSL_2256 PF17804 Tail specific protease N-terminal domain ALSL_2256 PF03572 Peptidase family S41 ALSL_2256 PF00595 PDZ domain ALSL_2256 PF11818 C-terminal domain of tail specific protease (DUF3340) ALSL_2257 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family ALSL_2257 PF04055 Radical SAM superfamily ALSL_2258 PF03099 Biotin/lipoate A/B protein ligase family ALSL_2259 PF04359 Protein of unknown function (DUF493) ALSL_2260 PF00768 D-alanyl-D-alanine carboxypeptidase ALSL_2260 PF07943 Penicillin-binding protein 5, C-terminal domain ALSL_2261 PF05036 Sporulation related domain ALSL_2261 PF03330 Lytic transglycolase ALSL_2262 PF13406 Transglycosylase SLT domain ALSL_2263 PF01098 Cell cycle protein ALSL_2264 PF00905 Penicillin binding protein transpeptidase domain ALSL_2264 PF03717 Penicillin-binding Protein dimerisation domain ALSL_2266 PF04085 rod shape-determining protein MreC ALSL_2269 PF00557 Metallopeptidase family M24 ALSL_2271 PF01654 Cytochrome bd terminal oxidase subunit I ALSL_2272 PF02322 Cytochrome bd terminal oxidase subunit II ALSL_2273 PF08173 Membrane bound YbgT-like protein ALSL_2274 PF05195 Aminopeptidase P, N-terminal domain ALSL_2274 PF00557 Metallopeptidase family M24 ALSL_2275 PF03695 Uncharacterised protein family (UPF0149) ALSL_2278 PF01812 5-formyltetrahydrofolate cyclo-ligase family ALSL_2280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) ALSL_2281 PF00999 Sodium/hydrogen exchanger family ALSL_2283 PF00380 Ribosomal protein S9/S16 ALSL_2284 PF00572 Ribosomal protein L13 ALSL_2285 PF13183 4Fe-4S dicluster domain ALSL_2285 PF02754 Cysteine-rich domain ALSL_2286 PF03232 Ubiquinone biosynthesis protein COQ7 ALSL_2287 PF02675 S-adenosylmethionine decarboxylase ALSL_2288 PF00027 Cyclic nucleotide-binding domain ALSL_2288 PF00325 Bacterial regulatory proteins, crp family ALSL_2291 PF00218 Indole-3-glycerol phosphate synthase ALSL_2292 PF00591 Glycosyl transferase family, a/b domain ALSL_2292 PF02885 Glycosyl transferase family, helical bundle domain ALSL_2293 PF00117 Glutamine amidotransferase class-I ALSL_2294 PF00375 Sodium:dicarboxylate symporter family ALSL_2297 PF00144 Beta-lactamase ALSL_2298 PF02358 Trehalose-phosphatase ALSL_2299 PF00982 Glycosyltransferase family 20 ALSL_2300 PF00849 RNA pseudouridylate synthase ALSL_2301 PF13525 Outer membrane lipoprotein ALSL_2302 PF00795 Carbon-nitrogen hydrolase ALSL_2302 PF02540 NAD synthase ALSL_2304 PF00549 CoA-ligase ALSL_2304 PF02629 CoA binding domain ALSL_2305 PF08442 ATP-grasp domain ALSL_2305 PF00549 CoA-ligase ALSL_2306 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2307 PF00158 Sigma-54 interaction domain ALSL_2307 PF02954 Bacterial regulatory protein, Fis family ALSL_2307 PF00072 Response regulator receiver domain ALSL_2308 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2308 PF00072 Response regulator receiver domain ALSL_2308 PF13188 PAS domain ALSL_2308 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2308 PF08448 PAS fold ALSL_2309 PF00072 Response regulator receiver domain ALSL_2310 PF01590 GAF domain ALSL_2310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2310 PF08446 PAS fold ALSL_2310 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2310 PF00360 Phytochrome region ALSL_2311 PF00436 Single-strand binding protein family ALSL_2312 PF07690 Major Facilitator Superfamily ALSL_2313 PF00348 Polyprenyl synthetase ALSL_2315 PF01494 FAD binding domain ALSL_2316 PF01494 FAD binding domain ALSL_2318 PF01923 Cobalamin adenosyltransferase ALSL_2319 PF00850 Histone deacetylase domain ALSL_2320 PF04453 LPS transport system D ALSL_2320 PF03968 OstA-like protein ALSL_2321 PF00639 PPIC-type PPIASE domain ALSL_2321 PF09312 SurA N-terminal domain ALSL_2322 PF04166 Pyridoxal phosphate biosynthetic protein PdxA ALSL_2323 PF00398 Ribosomal RNA adenine dimethylase ALSL_2325 PF00149 Calcineurin-like phosphoesterase ALSL_2326 PF07517 SecA DEAD-like domain ALSL_2326 PF01043 SecA preprotein cross-linking domain ALSL_2326 PF07516 SecA Wing and Scaffold domain ALSL_2326 PF02810 SEC-C motif ALSL_2328 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase ALSL_2329 PF12327 FtsZ family, C-terminal domain ALSL_2329 PF00091 Tubulin/FtsZ family, GTPase domain ALSL_2330 PF02491 SHS2 domain inserted in FTSA ALSL_2331 PF08478 POTRA domain, FtsQ-type ALSL_2331 PF03799 Cell division protein FtsQ ALSL_2332 PF01820 D-ala D-ala ligase N-terminus ALSL_2332 PF07478 D-ala D-ala ligase C-terminus ALSL_2333 PF02875 Mur ligase family, glutamate ligase domain ALSL_2333 PF08245 Mur ligase middle domain ALSL_2333 PF01225 Mur ligase family, catalytic domain ALSL_2334 PF03033 Glycosyltransferase family 28 N-terminal domain ALSL_2334 PF04101 Glycosyltransferase family 28 C-terminal domain ALSL_2335 PF01098 Cell cycle protein ALSL_2336 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 ALSL_2336 PF00953 Glycosyl transferase family 4 ALSL_2337 PF01225 Mur ligase family, catalytic domain ALSL_2337 PF08245 Mur ligase middle domain ALSL_2337 PF02875 Mur ligase family, glutamate ligase domain ALSL_2338 PF01225 Mur ligase family, catalytic domain ALSL_2338 PF08245 Mur ligase middle domain ALSL_2338 PF02875 Mur ligase family, glutamate ligase domain ALSL_2339 PF00905 Penicillin binding protein transpeptidase domain ALSL_2339 PF03717 Penicillin-binding Protein dimerisation domain ALSL_2340 PF04999 Cell division protein FtsL ALSL_2341 PF01795 MraW methylase family ALSL_2342 PF02381 MraZ protein, putative antitoxin-like ALSL_2343 PF03358 NADPH-dependent FMN reductase ALSL_2344 PF03960 ArsC family ALSL_2345 PF00155 Aminotransferase class I and II ALSL_2346 PF01171 PP-loop family ALSL_2349 PF05193 Peptidase M16 inactive domain ALSL_2349 PF00675 Insulinase (Peptidase family M16) ALSL_2351 PF00588 SpoU rRNA Methylase family ALSL_2353 PF03109 ABC1 family ALSL_2354 PF00849 RNA pseudouridylate synthase ALSL_2355 PF00472 RF-1 domain ALSL_2356 PF01553 Acyltransferase ALSL_2357 PF01810 LysE type translocator ALSL_2358 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family ALSL_2358 PF03466 LysR substrate binding domain ALSL_2359 PF01274 Malate synthase ALSL_2360 PF00463 Isocitrate lyase family ALSL_2361 PF01078 Magnesium chelatase, subunit ChlI ALSL_2361 PF13335 Magnesium chelatase, subunit ChlI C-terminal ALSL_2362 PF04380 Membrane fusogenic activity ALSL_2363 PF00543 Nitrogen regulatory protein P-II ALSL_2364 PF00300 Histidine phosphatase superfamily (branch 1) ALSL_2365 PF01292 Prokaryotic cytochrome b561 ALSL_2366 PF01218 Coproporphyrinogen III oxidase ALSL_2367 PF00535 Glycosyl transferase family 2 ALSL_2368 PF14602 Hexapeptide repeat of succinyl-transferase ALSL_2368 PF12804 MobA-like NTP transferase domain ALSL_2368 PF00132 Bacterial transferase hexapeptide (six repeats) ALSL_2371 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain ALSL_2371 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain ALSL_2372 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALSL_2372 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALSL_2373 PF00231 ATP synthase ALSL_2374 PF02874 ATP synthase alpha/beta family, beta-barrel domain ALSL_2374 PF00306 ATP synthase alpha/beta chain, C terminal domain ALSL_2374 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALSL_2375 PF00213 ATP synthase delta (OSCP) subunit ALSL_2376 PF00430 ATP synthase B/B' CF(0) ALSL_2377 PF00137 ATP synthase subunit C ALSL_2378 PF00119 ATP synthase A chain ALSL_2381 PF01925 Sulfite exporter TauE/SafE ALSL_2382 PF01380 SIS domain ALSL_2383 PF00291 Pyridoxal-phosphate dependent enzyme ALSL_2383 PF00571 CBS domain ALSL_2388 PF00437 Type II/IV secretion system protein ALSL_2389 PF14497 Glutathione S-transferase, C-terminal domain ALSL_2389 PF02798 Glutathione S-transferase, N-terminal domain ALSL_2390 PF00162 Phosphoglycerate kinase ALSL_2391 PF00456 Transketolase, thiamine diphosphate binding domain ALSL_2391 PF02780 Transketolase, C-terminal domain ALSL_2391 PF02779 Transketolase, pyrimidine binding domain ALSL_2394 PF00274 Fructose-bisphosphate aldolase class-I ALSL_2396 PF00669 Bacterial flagellin N-terminal helical region ALSL_2397 PF00460 Flagella basal body rod protein ALSL_2397 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALSL_2398 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase ALSL_2398 PF10135 Rod binding protein ALSL_2399 PF02119 Flagellar P-ring protein ALSL_2400 PF02107 Flagellar L-ring protein ALSL_2401 PF00460 Flagella basal body rod protein ALSL_2401 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALSL_2402 PF00460 Flagella basal body rod protein ALSL_2402 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALSL_2403 PF00460 Flagella basal body rod protein ALSL_2403 PF07559 Flagellar basal body protein FlaE ALSL_2403 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALSL_2404 PF03963 Flagellar hook capping protein - N-terminal region ALSL_2405 PF00460 Flagella basal body rod protein ALSL_2405 PF06429 Flagellar basal body rod FlgEFG protein C-terminal ALSL_2406 PF00460 Flagella basal body rod protein ALSL_2407 PF08447 PAS fold ALSL_2407 PF13426 PAS domain ALSL_2407 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain ALSL_2414 PF00037 4Fe-4S binding domain ALSL_2416 PF01467 Cytidylyltransferase-like ALSL_2418 PF00448 SRP54-type protein, GTPase domain ALSL_2418 PF02881 SRP54-type protein, helical bundle domain ALSL_2420 PF00730 HhH-GPD superfamily base excision DNA repair protein ALSL_2420 PF14815 NUDIX domain ALSL_2420 PF00633 Helix-hairpin-helix motif ALSL_2420 PF10576 Iron-sulfur binding domain of endonuclease III ALSL_2421 PF04362 Bacterial Fe(2+) trafficking ALSL_2425 PF01381 Helix-turn-helix ALSL_2425 PF13521 AAA domain ALSL_2426 PF06114 IrrE N-terminal-like domain ALSL_2428 PF02796 Helix-turn-helix domain of resolvase ALSL_2428 PF00239 Resolvase, N terminal domain ALSL_2431 PF13276 HTH-like domain ALSL_2431 PF13683 Integrase core domain ALSL_2432 PF03412 Peptidase C39 family ALSL_2432 PF00005 ABC transporter ALSL_2432 PF00664 ABC transporter transmembrane region ALSL_2433 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2433 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2445 PF00171 Aldehyde dehydrogenase family ALSL_2446 PF05199 GMC oxidoreductase ALSL_2446 PF00732 GMC oxidoreductase ALSL_2447 PF05598 Transposase domain (DUF772) ALSL_2448 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ALSL_2452 PF13521 AAA domain ALSL_2452 PF01381 Helix-turn-helix ALSL_2453 PF06114 IrrE N-terminal-like domain ALSL_2455 PF02796 Helix-turn-helix domain of resolvase ALSL_2455 PF00239 Resolvase, N terminal domain ALSL_2458 PF13276 HTH-like domain ALSL_2458 PF13683 Integrase core domain ALSL_2459 PF03412 Peptidase C39 family ALSL_2459 PF00005 ABC transporter ALSL_2459 PF00664 ABC transporter transmembrane region ALSL_2460 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2460 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2474 PF02796 Helix-turn-helix domain of resolvase ALSL_2474 PF00239 Resolvase, N terminal domain ALSL_2477 PF13276 HTH-like domain ALSL_2477 PF13683 Integrase core domain ALSL_2478 PF00664 ABC transporter transmembrane region ALSL_2478 PF03412 Peptidase C39 family ALSL_2478 PF00005 ABC transporter ALSL_2479 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2479 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2491 PF00171 Aldehyde dehydrogenase family ALSL_2492 PF00732 GMC oxidoreductase ALSL_2492 PF05199 GMC oxidoreductase ALSL_2493 PF05598 Transposase domain (DUF772) ALSL_2494 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH ALSL_2497 PF00724 NADH:flavin oxidoreductase / NADH oxidase family ALSL_2501 PF00271 Helicase conserved C-terminal domain ALSL_2501 PF00270 DEAD/DEAH box helicase ALSL_2501 PF00570 HRDC domain ALSL_2501 PF16124 RecQ zinc-binding ALSL_2501 PF09382 RQC domain ALSL_2504 PF02321 Outer membrane efflux protein ALSL_2505 PF13533 Biotin-lipoyl like ALSL_2506 PF07869 Protein of unknown function (DUF1656) ALSL_2509 PF01384 Phosphate transporter family ALSL_2511 PF01595 Cyclin M transmembrane N-terminal domain ALSL_2511 PF00571 CBS domain ALSL_2511 PF03471 Transporter associated domain ALSL_2512 PF00588 SpoU rRNA Methylase family ALSL_2513 PF00459 Inositol monophosphatase family ALSL_2516 PF00578 AhpC/TSA family ALSL_2519 PF03279 Bacterial lipid A biosynthesis acyltransferase ALSL_2520 PF00535 Glycosyl transferase family 2 ALSL_2524 PF04264 YceI-like domain ALSL_2525 PF00881 Nitroreductase family ALSL_2527 PF02308 MgtC family ALSL_2528 PF03710 Glutamate-ammonia ligase adenylyltransferase ALSL_2528 PF08335 GlnD PII-uridylyltransferase ALSL_2529 PF00884 Sulfatase ALSL_2532 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2532 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2533 PF04151 Bacterial pre-peptidase C-terminal domain ALSL_2533 PF04389 Peptidase family M28 ALSL_2534 PF00118 TCP-1/cpn60 chaperonin family ALSL_2535 PF00166 Chaperonin 10 Kd subunit ALSL_2537 PF03091 CutA1 divalent ion tolerance protein ALSL_2538 PF11412 Disulphide bond corrector protein DsbC ALSL_2538 PF02683 Cytochrome C biogenesis protein transmembrane region ALSL_2539 PF00578 AhpC/TSA family ALSL_2544 PF02798 Glutathione S-transferase, N-terminal domain ALSL_2545 PF13193 AMP-binding enzyme C-terminal domain ALSL_2545 PF00501 AMP-binding enzyme ALSL_2546 PF00501 AMP-binding enzyme ALSL_2546 PF13193 AMP-binding enzyme C-terminal domain ALSL_2548 PF00043 Glutathione S-transferase, C-terminal domain ALSL_2548 PF02798 Glutathione S-transferase, N-terminal domain ALSL_2550 PF00501 AMP-binding enzyme ALSL_2550 PF13193 AMP-binding enzyme C-terminal domain ALSL_2552 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) ALSL_2554 PF01553 Acyltransferase ALSL_2556 PF01209 ubiE/COQ5 methyltransferase family ALSL_2558 PF13193 AMP-binding enzyme C-terminal domain ALSL_2558 PF00501 AMP-binding enzyme ALSL_2559 PF00873 AcrB/AcrD/AcrF family ALSL_2561 PF13181 Tetratricopeptide repeat ALSL_2562 PF00392 Bacterial regulatory proteins, gntR family ALSL_2562 PF07702 UTRA domain ALSL_2563 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain ALSL_2563 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain ALSL_2564 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase ALSL_2565 PF00920 Dehydratase family ALSL_2566 PF01081 KDPG and KHG aldolase ALSL_2567 PF01026 TatD related DNase ALSL_2568 PF03413 Peptidase propeptide and YPEB domain ALSL_2568 PF07504 Fungalysin/Thermolysin Propeptide Motif ALSL_2568 PF04151 Bacterial pre-peptidase C-terminal domain ALSL_2568 PF01447 Thermolysin metallopeptidase, catalytic domain ALSL_2568 PF02868 Thermolysin metallopeptidase, alpha-helical domain ALSL_2569 PF05658 Head domain of trimeric autotransporter adhesin ALSL_2569 PF05662 Coiled stalk of trimeric autotransporter adhesin ALSL_2569 PF13018 Extended Signal Peptide of Type V secretion system ALSL_2569 PF03895 YadA-like membrane anchor domain ALSL_2570 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain ALSL_2570 PF00437 Type II/IV secretion system protein ALSL_2571 PF00482 Type II secretion system (T2SS), protein F ALSL_2572 PF08334 Type II secretion system (T2SS), protein G ALSL_2574 PF07963 Prokaryotic N-terminal methylation motif ALSL_2575 PF07963 Prokaryotic N-terminal methylation motif ALSL_2575 PF11612 Type II secretion system (T2SS), protein J ALSL_2576 PF03934 Type II secretion system (T2SS), protein K ALSL_2577 PF05137 Fimbrial assembly protein (PilN) ALSL_2580 PF03958 Bacterial type II/III secretion system short domain ALSL_2580 PF00263 Bacterial type II and III secretion system protein ALSL_2581 PF13307 Helicase C-terminal domain ALSL_2581 PF06733 DEAD_2 ALSL_2582 PF13188 PAS domain ALSL_2582 PF03707 Bacterial signalling protein N terminal repeat ALSL_2582 PF00990 Diguanylate cyclase, GGDEF domain ALSL_2582 PF00563 EAL domain ALSL_2585 PF01432 Peptidase family M3 ALSL_2586 PF01734 Patatin-like phospholipase ALSL_2588 PF02080 TrkA-C domain ALSL_2588 PF03600 Citrate transporter ALSL_2592 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain ALSL_2592 PF03900 Porphobilinogen deaminase, C-terminal domain ALSL_2593 PF04397 LytTr DNA-binding domain ALSL_2593 PF00072 Response regulator receiver domain ALSL_2594 PF07694 5TMR of 5TMR-LYT ALSL_2594 PF06580 Histidine kinase ALSL_2596 PF07676 WD40-like Beta Propeller Repeat ALSL_2596 PF00326 Prolyl oligopeptidase family ALSL_2597 PF01925 Sulfite exporter TauE/SafE ALSL_2598 PF01022 Bacterial regulatory protein, arsR family ALSL_2599 PF04273 Putative phosphatase (DUF442) ALSL_2599 PF00753 Metallo-beta-lactamase superfamily ALSL_2600 PF00753 Metallo-beta-lactamase superfamily ALSL_2602 PF04143 Sulphur transport ALSL_2604 PF02321 Outer membrane efflux protein ALSL_2605 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2606 PF07690 Major Facilitator Superfamily ALSL_2608 PF00462 Glutaredoxin ALSL_2612 PF01408 Oxidoreductase family, NAD-binding Rossmann fold ALSL_2612 PF02894 Oxidoreductase family, C-terminal alpha/beta domain ALSL_2613 PF00005 ABC transporter ALSL_2614 PF01343 Peptidase family S49 ALSL_2616 PF18074 Primosomal protein N C-terminal domain ALSL_2616 PF18319 PriA DNA helicase Cys-rich region (CRR) domain ALSL_2616 PF00270 DEAD/DEAH box helicase ALSL_2616 PF17764 3′ DNA-binding domain (3′BD) ALSL_2616 PF00271 Helicase conserved C-terminal domain ALSL_2617 PF02321 Outer membrane efflux protein ALSL_2618 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion ALSL_2618 PF00529 HlyD membrane-fusion protein of T1SS ALSL_2619 PF00873 AcrB/AcrD/AcrF family ALSL_2620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase ALSL_2620 PF00512 His Kinase A (phospho-acceptor) domain ALSL_2621 PF00072 Response regulator receiver domain ALSL_2621 PF00486 Transcriptional regulatory protein, C terminal ALSL_2622 PF04542 Sigma-70 region 2 ALSL_2622 PF04545 Sigma-70, region 4 ALSL_2623 PF03167 Uracil DNA glycosylase superfamily ALSL_2624 PF01339 CheB methylesterase ALSL_2624 PF00072 Response regulator receiver domain ALSL_2625 PF18075 FtsX extracellular domain ALSL_2626 PF00005 ABC transporter ALSL_2627 PF00270 DEAD/DEAH box helicase ALSL_2627 PF12300 ATP-dependent RNA helicase RhlB ALSL_2627 PF00271 Helicase conserved C-terminal domain ALSL_2628 PF00085 Thioredoxin ALSL_2630 PF07498 Rho termination factor, N-terminal domain ALSL_2630 PF07497 Rho termination factor, RNA-binding domain ALSL_2630 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain ALSL_2632 PF04107 Glutamate-cysteine ligase family 2(GCS2) ALSL_2634 PF01432 Peptidase family M3 ALSL_2636 PF13185 GAF domain ALSL_2637 PF01926 50S ribosome-binding GTPase ALSL_2638 PF00034 Cytochrome c ALSL_2639 PF01323 DSBA-like thioredoxin domain ALSL_2640 PF01323 DSBA-like thioredoxin domain ALSL_2643 PF01464 Transglycosylase SLT domain ALSL_2643 PF14718 Soluble lytic murein transglycosylase L domain ALSL_2644 PF01204 Trehalase ALSL_2645 PF12627 Probable RNA and SrmB- binding site of polymerase A ALSL_2645 PF01743 Poly A polymerase head domain ALSL_2645 PF01966 HD domain ALSL_2648 PF00593 TonB dependent receptor ALSL_2651 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) ALSL_2652 PF02152 Dihydroneopterin aldolase ALSL_2653 PF07690 Major Facilitator Superfamily ALSL_2658 PF05726 Pirin C-terminal cupin domain ALSL_2658 PF02678 Pirin ALSL_2659 PF00528 Binding-protein-dependent transport system inner membrane component ALSL_2660 PF00528 Binding-protein-dependent transport system inner membrane component ALSL_2662 PF01229 Glycosyl hydrolases family 39 ALSL_2664 PF04820 Tryptophan halogenase ALSL_2665 PF00593 TonB dependent receptor ALSL_2666 PF00356 Bacterial regulatory proteins, lacI family ALSL_2668 PF02527 rRNA small subunit methyltransferase G ALSL_2669 PF13614 AAA domain ALSL_2670 PF17762 HTH domain found in ParB protein ALSL_2670 PF02195 ParB-like nuclease domain ALSL_2671 PF00535 Glycosyl transferase family 2 ALSL_2672 PF04343 Protein of unknown function, DUF488 ALSL_2673 PF00132 Bacterial transferase hexapeptide (six repeats) ALSL_2674 PF05598 Transposase domain (DUF772) ALSL_2674 PF01609 Transposase DDE domain ALSL_2676 PF08501 Shikimate dehydrogenase substrate binding domain ALSL_2676 PF01488 Shikimate / quinate 5-dehydrogenase ALSL_2676 PF18317 Shikimate 5'-dehydrogenase C-terminal domain ALSL_2678 PF00583 Acetyltransferase (GNAT) family ALSL_2681 PF01678 Diaminopimelate epimerase ALSL_2683 PF00589 Phage integrase family ALSL_2683 PF02899 Phage integrase, N-terminal SAM-like domain ALSL_2684 PF00227 Proteasome subunit ALSL_2685 PF00004 ATPase family associated with various cellular activities (AAA) ALSL_2685 PF07724 AAA domain (Cdc48 subfamily) ALSL_2685 PF10431 C-terminal, D2-small domain, of ClpB protein ALSL_2688 PF00294 pfkB family carbohydrate kinase ALSL_2689 PF05025 RbsD / FucU transport protein family ALSL_2690 PF00005 ABC transporter ALSL_2691 PF02653 Branched-chain amino acid transport system / permease component ALSL_2692 PF13407 Periplasmic binding protein domain ALSL_2693 PF04966 Carbohydrate-selective porin, OprB family ALSL_2694 PF02653 Branched-chain amino acid transport system / permease component ALSL_2695 PF00005 ABC transporter ALSL_2696 PF13407 Periplasmic binding protein domain ALSL_2697 PF02782 FGGY family of carbohydrate kinases, C-terminal domain ALSL_2697 PF00370 FGGY family of carbohydrate kinases, N-terminal domain ALSL_2699 PF12833 Helix-turn-helix domain ALSL_2700 PF01263 Aldose 1-epimerase ALSL_2701 PF02733 Dak1 domain ALSL_2702 PF10396 GTP-binding protein TrmE N-terminus ALSL_2702 PF01926 50S ribosome-binding GTPase ALSL_2702 PF12631 MnmE helical domain ALSL_2703 PF14849 YidC periplasmic domain ALSL_2703 PF02096 60Kd inner membrane protein ALSL_2704 PF00825 Ribonuclease P ALSL_2705 PF00468 Ribosomal protein L34