locus-tag class description D11S_0003 PF13401 AAA domain D11S_0003 PF09077 Mu B transposition protein, C terminal D11S_0004 PF09299 Mu transposase, C-terminal D11S_0004 PF02914 Bacteriophage Mu transposase D11S_0004 PF09039 Mu DNA binding, I gamma subdomain D11S_0004 PF02316 Mu DNA-binding domain D11S_0005 PF13693 Winged helix-turn-helix DNA-binding D11S_0008 PF00155 Aminotransferase class I and II D11S_0009 PF00202 Aminotransferase class-III D11S_0011 PF02666 Phosphatidylserine decarboxylase D11S_0012 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D11S_0012 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D11S_0013 PF01472 PUA domain D11S_0013 PF00696 Amino acid kinase family D11S_0014 PF00696 Amino acid kinase family D11S_0014 PF01472 PUA domain D11S_0014 PF01472 PUA domain D11S_0014 PF00696 Amino acid kinase family D11S_0016 PF06738 Putative threonine/serine exporter D11S_0017 PF06738 Putative threonine/serine exporter D11S_0017 PF12821 Threonine/Serine exporter, ThrE D11S_0018 PF00186 Dihydrofolate reductase D11S_0019 PF00571 CBS domain D11S_0019 PF01595 Cyclin M transmembrane N-terminal domain D11S_0019 PF03471 Transporter associated domain D11S_0021 PF07509 Protein of unknown function (DUF1523) D11S_0022 PF01026 TatD related DNase D11S_0023 PF09115 DNA polymerase III, delta subunit, C terminal D11S_0024 PF02223 Thymidylate kinase D11S_0025 PF02618 YceG-like family D11S_0026 PF00543 Nitrogen regulatory protein P-II D11S_0027 PF00455 DeoR C terminal sensor domain D11S_0027 PF08220 DeoR-like helix-turn-helix domain D11S_0028 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D11S_0028 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D11S_0029 PF07005 Sugar-binding N-terminal domain D11S_0029 PF17042 Nucleotide-binding C-terminal domain D11S_0030 PF00596 Class II Aldolase and Adducin N-terminal domain D11S_0031 PF01261 Xylose isomerase-like TIM barrel D11S_0032 PF02447 GntP family permease D11S_0034 PF04199 Putative cyclase D11S_0037 PF05192 MutS domain III D11S_0037 PF05190 MutS family domain IV D11S_0037 PF00488 MutS domain V D11S_0037 PF01624 MutS domain I D11S_0037 PF05188 MutS domain II D11S_0039 PF04445 Putative SAM-dependent methyltransferase D11S_0040 PF05958 tRNA (Uracil-5-)-methyltransferase D11S_0041 PF04219 Protein of unknown function, DUF D11S_0042 PF01323 DSBA-like thioredoxin domain D11S_0043 PF06288 Protein of unknown function (DUF1040) D11S_0044 PF12804 MobA-like NTP transferase domain D11S_0046 PF00381 PTS HPr component phosphorylation site D11S_0046 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D11S_0047 PF00294 pfkB family carbohydrate kinase D11S_0048 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D11S_0053 PF02525 Flavodoxin-like fold D11S_0056 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D11S_0057 PF00467 KOW motif D11S_0057 PF02357 Transcription termination factor nusG D11S_0058 PF03946 Ribosomal protein L11, N-terminal domain D11S_0058 PF00298 Ribosomal protein L11, RNA binding domain D11S_0059 PF00687 Ribosomal protein L1p/L10e family D11S_0061 PF00466 Ribosomal protein L10 D11S_0062 PF16320 Ribosomal protein L7/L12 dimerisation domain D11S_0062 PF00542 Ribosomal protein L7/L12 C-terminal domain D11S_0063 PF00562 RNA polymerase Rpb2, domain 6 D11S_0063 PF10385 RNA polymerase beta subunit external 1 domain D11S_0063 PF04565 RNA polymerase Rpb2, domain 3 D11S_0063 PF04560 RNA polymerase Rpb2, domain 7 D11S_0063 PF04561 RNA polymerase Rpb2, domain 2 D11S_0063 PF04563 RNA polymerase beta subunit D11S_0064 PF00623 RNA polymerase Rpb1, domain 2 D11S_0064 PF05000 RNA polymerase Rpb1, domain 4 D11S_0064 PF04997 RNA polymerase Rpb1, domain 1 D11S_0064 PF04983 RNA polymerase Rpb1, domain 3 D11S_0064 PF04998 RNA polymerase Rpb1, domain 5 D11S_0065 PF00366 Ribosomal protein S17 D11S_0066 PF00831 Ribosomal L29 protein D11S_0067 PF00252 Ribosomal protein L16p/L10e D11S_0068 PF07650 KH domain D11S_0068 PF00189 Ribosomal protein S3, C-terminal domain D11S_0069 PF00237 Ribosomal protein L22p/L17e D11S_0071 PF03947 Ribosomal Proteins L2, C-terminal domain D11S_0071 PF00181 Ribosomal Proteins L2, RNA binding domain D11S_0072 PF00276 Ribosomal protein L23 D11S_0073 PF00573 Ribosomal protein L4/L1 family D11S_0074 PF00297 Ribosomal protein L3 D11S_0075 PF00338 Ribosomal protein S10p/S20e D11S_0076 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0076 PF03466 LysR substrate binding domain D11S_0077 PF01144 Coenzyme A transferase D11S_0078 PF01144 Coenzyme A transferase D11S_0079 PF02667 Short chain fatty acid transporter D11S_0080 PF02803 Thiolase, C-terminal domain D11S_0080 PF00108 Thiolase, N-terminal domain D11S_0081 PF01037 Lrp/AsnC ligand binding domain D11S_0081 PF13404 AsnC-type helix-turn-helix domain D11S_0082 PF03606 C4-dicarboxylate anaerobic carrier D11S_0083 PF00696 Amino acid kinase family D11S_0084 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D11S_0084 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D11S_0085 PF00654 Voltage gated chloride channel D11S_0086 PF01207 Dihydrouridine synthase (Dus) D11S_0087 PF03590 Aspartate-ammonia ligase D11S_0088 PF13404 AsnC-type helix-turn-helix domain D11S_0088 PF01037 Lrp/AsnC ligand binding domain D11S_0089 PF01048 Phosphorylase superfamily D11S_0090 PF01594 AI-2E family transporter D11S_0091 PF03960 ArsC family D11S_0092 PF17347 Family of unknown function (DUF5377) D11S_0093 PF03889 Alternative ribosome-rescue factor A D11S_0094 PF18693 TRAM domain D11S_0094 PF00919 Uncharacterized protein family UPF0004 D11S_0094 PF04055 Radical SAM superfamily D11S_0095 PF01451 Low molecular weight phosphotyrosine protein phosphatase D11S_0096 PF04325 Protein of unknown function (DUF465) D11S_0097 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D11S_0099 PF06877 Regulator of ribonuclease activity B D11S_0100 PF01741 Large-conductance mechanosensitive channel, MscL D11S_0101 PF02254 TrkA-N domain D11S_0101 PF02080 TrkA-C domain D11S_0102 PF01189 16S rRNA methyltransferase RsmB/F D11S_0102 PF01029 NusB family D11S_0103 PF00551 Formyl transferase D11S_0103 PF02911 Formyl transferase, C-terminal domain D11S_0104 PF01327 Polypeptide deformylase D11S_0112 PF09383 NIL domain D11S_0112 PF00005 ABC transporter D11S_0113 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0114 PF03180 NLPA lipoprotein D11S_0116 PF00588 SpoU rRNA Methylase family D11S_0117 PF04393 Protein of unknown function (DUF535) D11S_0119 PF01926 50S ribosome-binding GTPase D11S_0124 PF12462 DNA helicase IV / RNA helicase N terminal D11S_0124 PF13361 UvrD-like helicase C-terminal domain D11S_0124 PF00580 UvrD/REP helicase N-terminal domain D11S_0127 PF01381 Helix-turn-helix D11S_0131 PF01555 DNA methylase D11S_0136 PF00665 Integrase core domain D11S_0139 PF04748 Divergent polysaccharide deacetylase D11S_0140 PF01551 Peptidase family M23 D11S_0141 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D11S_0141 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D11S_0141 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D11S_0141 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D11S_0142 PF00300 Histidine phosphatase superfamily (branch 1) D11S_0143 PF03887 YfbU domain D11S_0144 PF04333 MlaA lipoprotein D11S_0145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D11S_0146 PF07724 AAA domain (Cdc48 subfamily) D11S_0146 PF10431 C-terminal, D2-small domain, of ClpB protein D11S_0146 PF00004 ATPase family associated with various cellular activities (AAA) D11S_0147 PF00227 Proteasome subunit D11S_0149 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D11S_0152 PF03222 Tryptophan/tyrosine permease family D11S_0153 PF00719 Inorganic pyrophosphatase D11S_0154 PF01435 Peptidase family M48 D11S_0155 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D11S_0156 PF00579 tRNA synthetases class I (W and Y) D11S_0157 PF02881 SRP54-type protein, helical bundle domain D11S_0157 PF00448 SRP54-type protein, GTPase domain D11S_0159 PF03610 PTS system fructose IIA component D11S_0159 PF03830 PTS system sorbose subfamily IIB component D11S_0160 PF03609 PTS system sorbose-specific iic component D11S_0161 PF03613 PTS system mannose/fructose/sorbose family IID component D11S_0163 PF07662 Na+ dependent nucleoside transporter C-terminus D11S_0163 PF07670 Nucleoside recognition D11S_0163 PF01773 Na+ dependent nucleoside transporter N-terminus D11S_0164 PF01048 Phosphorylase superfamily D11S_0167 PF14883 Hypothetical glycosyl hydrolase family 13 D11S_0167 PF01522 Polysaccharide deacetylase D11S_0168 PF00535 Glycosyl transferase family 2 D11S_0171 PF07690 Major Facilitator Superfamily D11S_0172 PF01243 Pyridoxamine 5'-phosphate oxidase D11S_0172 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region D11S_0177 PF00270 DEAD/DEAH box helicase D11S_0177 PF00271 Helicase conserved C-terminal domain D11S_0179 PF05175 Methyltransferase small domain D11S_0180 PF04973 Nicotinamide mononucleotide transporter D11S_0181 PF00849 RNA pseudouridylate synthase D11S_0183 PF02664 S-Ribosylhomocysteinase (LuxS) D11S_0185 PF12464 Maltose acetyltransferase D11S_0185 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_0188 PF00874 PRD domain D11S_0192 PF00580 UvrD/REP helicase N-terminal domain D11S_0192 PF13361 UvrD-like helicase C-terminal domain D11S_0193 PF07119 Protein of unknown function (DUF1375) D11S_0195 PF00476 DNA polymerase family A D11S_0195 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D11S_0195 PF01367 5'-3' exonuclease, C-terminal SAM fold D11S_0195 PF01612 3'-5' exonuclease D11S_0198 PF00149 Calcineurin-like phosphoesterase D11S_0198 PF02872 5'-nucleotidase, C-terminal domain D11S_0201 PF01370 NAD dependent epimerase/dehydratase family D11S_0203 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D11S_0204 PF05257 CHAP domain D11S_0204 PF03738 Glutathionylspermidine synthase preATP-grasp D11S_0205 PF03264 NapC/NirT cytochrome c family, N-terminal region D11S_0206 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) D11S_0207 PF12837 4Fe-4S binding domain D11S_0207 PF12801 4Fe-4S binding domain D11S_0208 PF12838 4Fe-4S dicluster domain D11S_0208 PF12800 4Fe-4S binding domain D11S_0209 PF10518 TAT (twin-arginine translocation) pathway signal sequence D11S_0209 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D11S_0209 PF00384 Molybdopterin oxidoreductase D11S_0209 PF01568 Molydopterin dinucleotide binding domain D11S_0210 PF03927 NapD protein D11S_0212 PF00672 HAMP domain D11S_0212 PF07730 Histidine kinase D11S_0212 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term D11S_0212 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_0213 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D11S_0213 PF01565 FAD binding domain D11S_0215 PF04542 Sigma-70 region 2 D11S_0215 PF04545 Sigma-70, region 4 D11S_0215 PF00140 Sigma-70 factor, region 1.2 D11S_0216 PF04994 TfoX C-terminal domain D11S_0216 PF04993 TfoX N-terminal domain D11S_0220 PF03144 Elongation factor Tu domain 2 D11S_0220 PF00679 Elongation factor G C-terminus D11S_0220 PF14492 Elongation Factor G, domain II D11S_0220 PF03764 Elongation factor G, domain IV D11S_0220 PF00009 Elongation factor Tu GTP binding domain D11S_0221 PF00177 Ribosomal protein S7p/S5e D11S_02215 PF01381 Helix-turn-helix D11S_02215 PF00717 Peptidase S24-like D11S_02225 PF00203 Ribosomal protein S19 D11S_0224 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D11S_0224 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D11S_0225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0225 PF03466 LysR substrate binding domain D11S_0226 PF00892 EamA-like transporter family D11S_0227 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D11S_0227 PF01488 Shikimate / quinate 5-dehydrogenase D11S_0227 PF08501 Shikimate dehydrogenase substrate binding domain D11S_02275 PF00164 Ribosomal protein S12/S23 D11S_0228 PF01300 Telomere recombination D11S_0229 PF01396 Topoisomerase DNA binding C4 zinc finger D11S_0230 PF02646 RmuC family D11S_0231 PF03350 Uncharacterized protein family, UPF0114 D11S_0232 PF00581 Rhodanese-like domain D11S_0233 PF17364 Family of unknown function (DUF5389) D11S_0234 PF01694 Rhomboid family D11S_0235 PF08220 DeoR-like helix-turn-helix domain D11S_0235 PF00455 DeoR C terminal sensor domain D11S_02375 PF00238 Ribosomal protein L14p/L23e D11S_0238 PF00005 ABC transporter D11S_0238 PF06472 ABC transporter transmembrane region 2 D11S_02380 PF00253 Ribosomal protein S14p/S29e D11S_02385 PF00327 Ribosomal protein L30p/L7e D11S_0239 PF06826 Predicted Permease Membrane Region D11S_0239 PF02080 TrkA-C domain D11S_0241 PF00696 Amino acid kinase family D11S_0243 PF01765 Ribosome recycling factor D11S_0244 PF13288 DXP reductoisomerase C-terminal domain D11S_0244 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D11S_0244 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D11S_02440 PF13407 Periplasmic binding protein domain D11S_0245 PF01255 Putative undecaprenyl diphosphate synthase D11S_0247 PF02163 Peptidase family M50 D11S_0247 PF00595 PDZ domain D11S_0247 PF17820 PDZ domain D11S_0248 PF07244 Surface antigen variable number repeat D11S_0248 PF01103 Surface antigen D11S_02480 PF02575 YbaB/EbfC DNA-binding family D11S_0249 PF03938 Outer membrane protein (OmpH-like) D11S_0250 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD D11S_0250 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_0251 PF07977 FabA-like domain D11S_0252 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_0252 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 D11S_0253 PF02684 Lipid-A-disaccharide synthetase D11S_0254 PF01351 Ribonuclease HII D11S_02550 PF04138 GtrA-like protein D11S_0257 PF01066 CDP-alcohol phosphatidyltransferase D11S_02570 PF00528 Binding-protein-dependent transport system inner membrane component D11S_02590 PF13657 HipA N-terminal domain D11S_02590 PF07804 HipA-like C-terminal domain D11S_0260 PF00994 Probable molybdopterin binding domain D11S_02635 PF00576 HIUase/Transthyretin family D11S_02660 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D11S_0267 PF00923 Transaldolase/Fructose-6-phosphate aldolase D11S_0268 PF02779 Transketolase, pyrimidine binding domain D11S_0268 PF02780 Transketolase, C-terminal domain D11S_0268 PF00456 Transketolase, thiamine diphosphate binding domain D11S_0269 PF01042 Endoribonuclease L-PSP D11S_0270 PF02631 RecX family D11S_0271 PF00154 recA bacterial DNA recombination protein D11S_0273 PF01914 MarC family integral membrane protein D11S_0275 PF13617 YnbE-like lipoprotein D11S_02780 PF03212 Pertactin D11S_02780 PF02395 Immunoglobulin A1 protease D11S_02780 PF03797 Autotransporter beta-domain D11S_0279 PF01791 DeoC/LacD family aldolase D11S_0280 PF08220 DeoR-like helix-turn-helix domain D11S_0280 PF00455 DeoR C terminal sensor domain D11S_0282 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_0282 PF12804 MobA-like NTP transferase domain D11S_0283 PF03702 Anhydro-N-acetylmuramic acid kinase D11S_0284 PF01380 SIS domain D11S_02840 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D11S_02840 PF03625 Domain of unknown function DUF302 D11S_02855 PF01797 Transposase IS200 like D11S_0288 PF01266 FAD dependent oxidoreductase D11S_02885 PF05951 Bacterial protein of unknown function (DUF882) D11S_0289 PF00497 Bacterial extracellular solute-binding proteins, family 3 D11S_0290 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0291 PF00005 ABC transporter D11S_0292 PF04077 DsrH like protein D11S_0293 PF02635 DsrE/DsrF-like family D11S_02935 PF00085 Thioredoxin D11S_0294 PF02635 DsrE/DsrF-like family D11S_0295 PF08348 YheO-like PAS domain D11S_0295 PF13309 HTH domain D11S_0296 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase D11S_0296 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D11S_0297 PF04102 SlyX D11S_0298 PF00462 Glutaredoxin D11S_0298 PF08534 Redoxin D11S_0299 PF03466 LysR substrate binding domain D11S_0299 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0300 PF00440 Bacterial regulatory proteins, tetR family D11S_0301 PF00005 ABC transporter D11S_0301 PF00664 ABC transporter transmembrane region D11S_0302 PF00664 ABC transporter transmembrane region D11S_0302 PF00005 ABC transporter D11S_0303 PF03605 Anaerobic c4-dicarboxylate membrane transporter D11S_0304 PF00581 Rhodanese-like domain D11S_0305 PF02556 Preprotein translocase subunit SecB D11S_0306 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D11S_0306 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D11S_0307 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_0307 PF06426 Serine acetyltransferase, N-terminal D11S_0310 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D11S_0311 PF06005 Cell division protein ZapB D11S_0312 PF00258 Flavodoxin D11S_0313 PF13932 GidA associated domain D11S_0313 PF01134 Glucose inhibited division protein A D11S_0314 PF05368 NmrA-like family D11S_0315 PF01638 HxlR-like helix-turn-helix D11S_0316 PF02527 rRNA small subunit methyltransferase G D11S_0317 PF03899 ATP synthase I chain D11S_0318 PF00119 ATP synthase A chain D11S_0319 PF00137 ATP synthase subunit C D11S_0320 PF00430 ATP synthase B/B' CF(0) D11S_0321 PF00213 ATP synthase delta (OSCP) subunit D11S_0322 PF00306 ATP synthase alpha/beta chain, C terminal domain D11S_0322 PF02874 ATP synthase alpha/beta family, beta-barrel domain D11S_0322 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D11S_0323 PF00231 ATP synthase D11S_0324 PF02874 ATP synthase alpha/beta family, beta-barrel domain D11S_0324 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D11S_0325 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D11S_0326 PF13416 Bacterial extracellular solute-binding protein D11S_0328 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D11S_0328 PF18766 SWI2/SNF2 ATPase D11S_0328 PF12008 Type I restriction and modification enzyme - subunit R C terminal D11S_0333 PF02384 N-6 DNA Methylase D11S_0333 PF12161 HsdM N-terminal domain D11S_0334 PF03613 PTS system mannose/fructose/sorbose family IID component D11S_0335 PF03609 PTS system sorbose-specific iic component D11S_0336 PF03610 PTS system fructose IIA component D11S_0336 PF03830 PTS system sorbose subfamily IIB component D11S_0337 PF07690 Major Facilitator Superfamily D11S_0338 PF12833 Helix-turn-helix domain D11S_0342 PF00155 Aminotransferase class I and II D11S_0343 PF02653 Branched-chain amino acid transport system / permease component D11S_0344 PF00005 ABC transporter D11S_0345 PF13407 Periplasmic binding protein domain D11S_0347 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D11S_0347 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D11S_0351 PF00665 Integrase core domain D11S_0351 PF13276 HTH-like domain D11S_0351 PF13333 Integrase core domain D11S_0352 PF13091 PLD-like domain D11S_0353 PF00588 SpoU rRNA Methylase family D11S_0353 PF08032 RNA 2'-O ribose methyltransferase substrate binding D11S_0354 PF00037 4Fe-4S binding domain D11S_0355 PF00445 Ribonuclease T2 family D11S_0356 PF00162 Phosphoglycerate kinase D11S_0357 PF01116 Fructose-bisphosphate aldolase class-II D11S_0359 PF04932 O-Antigen ligase D11S_0360 PF12146 Serine aminopeptidase, S33 D11S_0362 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D11S_0362 PF00205 Thiamine pyrophosphate enzyme, central domain D11S_0363 PF00585 C-terminal regulatory domain of Threonine dehydratase D11S_0363 PF00291 Pyridoxal-phosphate dependent enzyme D11S_0364 PF00585 C-terminal regulatory domain of Threonine dehydratase D11S_0364 PF00291 Pyridoxal-phosphate dependent enzyme D11S_0365 PF18075 FtsX extracellular domain D11S_0366 PF00005 ABC transporter D11S_0367 PF13419 Haloacid dehalogenase-like hydrolase D11S_0368 PF00834 Ribulose-phosphate 3 epimerase family D11S_0369 PF04977 Septum formation initiator D11S_0370 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D11S_0371 PF02542 YgbB family D11S_0372 PF01142 tRNA pseudouridine synthase D (TruD) D11S_0373 PF01975 Survival protein SurE D11S_0374 PF09335 SNARE associated Golgi protein D11S_0376 PF01551 Peptidase family M23 D11S_0376 PF01476 LysM domain D11S_0378 PF00535 Glycosyl transferase family 2 D11S_0379 PF00534 Glycosyl transferases group 1 D11S_0379 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) D11S_0380 PF01467 Cytidylyltransferase-like D11S_0382 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D11S_0383 PF02627 Carboxymuconolactone decarboxylase family D11S_0384 PF12833 Helix-turn-helix domain D11S_0384 PF02311 AraC-like ligand binding domain D11S_0385 PF00005 ABC transporter D11S_0385 PF00664 ABC transporter transmembrane region D11S_0386 PF01553 Acyltransferase D11S_0387 PF01726 LexA DNA binding domain D11S_0387 PF00717 Peptidase S24-like D11S_0389 PF01250 Ribosomal protein S6 D11S_0390 PF00436 Single-strand binding protein family D11S_0391 PF01084 Ribosomal protein S18 D11S_0392 PF03948 Ribosomal protein L9, C-terminal domain D11S_0392 PF01281 Ribosomal protein L9, N-terminal domain D11S_0393 PF17782 DprA winged helix domain D11S_0393 PF02481 DNA recombination-mediator protein A D11S_0394 PF03009 Glycerophosphoryl diester phosphodiesterase family D11S_0395 PF07690 Major Facilitator Superfamily D11S_0397 PF00588 SpoU rRNA Methylase family D11S_0397 PF08032 RNA 2'-O ribose methyltransferase substrate binding D11S_0398 PF08461 Ribonuclease R winged-helix domain D11S_0398 PF17876 Cold shock domain D11S_0398 PF00773 RNB domain D11S_0398 PF08206 Ribonuclease B OB domain D11S_0398 PF00575 S1 RNA binding domain D11S_0400 PF04085 rod shape-determining protein MreC D11S_0401 PF04093 rod shape-determining protein MreD D11S_0402 PF01245 Ribosomal protein L19 D11S_0403 PF01746 tRNA (Guanine-1)-methyltransferase D11S_0404 PF05239 PRC-barrel domain D11S_0404 PF01782 RimM N-terminal domain D11S_0405 PF00886 Ribosomal protein S16 D11S_0408 PF05195 Aminopeptidase P, N-terminal domain D11S_0408 PF00557 Metallopeptidase family M24 D11S_0409 PF03695 Uncharacterised protein family (UPF0149) D11S_0410 PF05164 Cell division protein ZapA D11S_0411 PF01812 5-formyltetrahydrofolate cyclo-ligase family D11S_0412 PF13525 Outer membrane lipoprotein D11S_0413 PF01479 S4 domain D11S_0413 PF00849 RNA pseudouridylate synthase D11S_0415 PF00884 Sulfatase D11S_0416 PF00881 Nitroreductase family D11S_0417 PF02594 Uncharacterised ACR, YggU family COG1872 D11S_0418 PF02325 YGGT family D11S_0419 PF01544 CorA-like Mg2+ transporter protein D11S_0420 PF13649 Methyltransferase domain D11S_0422 PF00873 AcrB/AcrD/AcrF family D11S_0423 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D11S_0424 PF00440 Bacterial regulatory proteins, tetR family D11S_0425 PF05036 Sporulation related domain D11S_0426 PF18074 Primosomal protein N C-terminal domain D11S_0426 PF00271 Helicase conserved C-terminal domain D11S_0426 PF00270 DEAD/DEAH box helicase D11S_0426 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D11S_0426 PF17764 3′ DNA-binding domain (3′BD) D11S_0427 PF09612 Bacterial protein of unknown function (HtrL_YibB) D11S_0429 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D11S_0431 PF01197 Ribosomal protein L31 D11S_0432 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D11S_0435 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D11S_0435 PF06827 Zinc finger found in FPG and IleRS D11S_0435 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D11S_0436 PF00471 Ribosomal protein L33 D11S_0437 PF00830 Ribosomal L28 family D11S_0438 PF04002 RadC-like JAB domain D11S_0440 PF04127 DNA / pantothenate metabolism flavoprotein D11S_0440 PF02441 Flavoprotein D11S_0441 PF00692 dUTPase D11S_0442 PF00440 Bacterial regulatory proteins, tetR family D11S_0443 PF06794 Uncharacterised protein family (UPF0270) D11S_0444 PF00027 Cyclic nucleotide-binding domain D11S_0444 PF13545 Crp-like helix-turn-helix domain D11S_0445 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D11S_0445 PF07992 Pyridine nucleotide-disulphide oxidoreductase D11S_0446 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ D11S_0447 PF00905 Penicillin binding protein transpeptidase domain D11S_0447 PF00912 Transglycosylase D11S_0447 PF17092 Penicillin-binding protein OB-like domain D11S_0448 PF11104 Type IV pilus assembly protein PilM; D11S_0452 PF00263 Bacterial type II and III secretion system protein D11S_0452 PF03958 Bacterial type II/III secretion system short domain D11S_0453 PF01202 Shikimate kinase D11S_0454 PF01761 3-dehydroquinate synthase D11S_0455 PF02086 D12 class N6 adenine-specific DNA methyltransferase D11S_0456 PF00436 Single-strand binding protein family D11S_0457 PF17760 UvrA interaction domain D11S_0457 PF17755 UvrA DNA-binding domain D11S_0458 PF13411 MerR HTH family regulatory protein D11S_0459 PF05258 Dna[CI] antecedent, DciA D11S_0461 PF07517 SecA DEAD-like domain D11S_0461 PF02810 SEC-C motif D11S_0461 PF01043 SecA preprotein cross-linking domain D11S_0461 PF07516 SecA Wing and Scaffold domain D11S_0462 PF00293 NUDIX domain D11S_0463 PF06144 DNA polymerase III, delta subunit D11S_0463 PF14840 Processivity clamp loader gamma complex DNA pol III C-term D11S_0464 PF04390 Lipopolysaccharide-assembly D11S_0466 PF08264 Anticodon-binding domain of tRNA D11S_0466 PF00133 tRNA synthetases class I (I, L, M and V) D11S_0466 PF13603 Leucyl-tRNA synthetase, Domain 2 D11S_0468 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) D11S_0469 PF01909 Nucleotidyltransferase domain D11S_0470 PF08780 Nucleotidyltransferase substrate binding protein like D11S_0471 PF00149 Calcineurin-like phosphoesterase D11S_0472 PF00398 Ribosomal RNA adenine dimethylase D11S_0473 PF09312 SurA N-terminal domain D11S_0473 PF00639 PPIC-type PPIASE domain D11S_0474 PF00156 Phosphoribosyl transferase domain D11S_0476 PF04356 Protein of unknown function (DUF489) D11S_0477 PF08328 Adenylosuccinate lyase C-terminal D11S_0477 PF00206 Lyase D11S_0479 PF00106 short chain dehydrogenase D11S_0480 PF13411 MerR HTH family regulatory protein D11S_0481 PF08240 Alcohol dehydrogenase GroES-like domain D11S_0481 PF00107 Zinc-binding dehydrogenase D11S_0482 PF00756 Putative esterase D11S_0484 PF00448 SRP54-type protein, GTPase domain D11S_0484 PF02881 SRP54-type protein, helical bundle domain D11S_0484 PF02978 Signal peptide binding domain D11S_0485 PF01578 Cytochrome C assembly protein D11S_0486 PF00571 CBS domain D11S_0486 PF03471 Transporter associated domain D11S_0486 PF01595 Cyclin M transmembrane N-terminal domain D11S_0487 PF01618 MotA/TolQ/ExbB proton channel family D11S_0488 PF02472 Biopolymer transport protein ExbD/TolR D11S_0489 PF03544 Gram-negative bacterial TonB protein C-terminal D11S_0493 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D11S_0493 PF00384 Molybdopterin oxidoreductase D11S_0493 PF01568 Molydopterin dinucleotide binding domain D11S_0494 PF13247 4Fe-4S dicluster domain D11S_0494 PF12800 4Fe-4S binding domain D11S_0495 PF04976 DMSO reductase anchor subunit (DmsC) D11S_0496 PF02613 Nitrate reductase delta subunit D11S_0497 PF12838 4Fe-4S dicluster domain D11S_0497 PF00037 4Fe-4S binding domain D11S_0498 PF02091 Glycyl-tRNA synthetase alpha subunit D11S_0502 PF02092 Glycyl-tRNA synthetase beta subunit D11S_0502 PF05746 DALR anticodon binding domain D11S_0503 PF00490 Delta-aminolevulinic acid dehydratase D11S_0504 PF00902 Sec-independent protein translocase protein (TatC) D11S_0506 PF02416 mttA/Hcf106 family D11S_0507 PF01430 Hsp33 protein D11S_0508 PF01479 S4 domain D11S_0509 PF13419 Haloacid dehalogenase-like hydrolase D11S_0510 PF00293 NUDIX domain D11S_0511 PF12833 Helix-turn-helix domain D11S_0511 PF02311 AraC-like ligand binding domain D11S_0512 PF04224 Protein of unknown function, DUF417 D11S_0513 PF03169 OPT oligopeptide transporter protein D11S_0515 PF00459 Inositol monophosphatase family D11S_0516 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D11S_0516 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D11S_0517 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D11S_0520 PF01177 Asp/Glu/Hydantoin racemase D11S_0524 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D11S_0524 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D11S_0525 PF02801 Beta-ketoacyl synthase, C-terminal domain D11S_0525 PF00109 Beta-ketoacyl synthase, N-terminal domain D11S_0528 PF00109 Beta-ketoacyl synthase, N-terminal domain D11S_0528 PF02801 Beta-ketoacyl synthase, C-terminal domain D11S_0539 PF00550 Phosphopantetheine attachment site D11S_0544 PF13419 Haloacid dehalogenase-like hydrolase D11S_0545 PF02899 Phage integrase, N-terminal SAM-like domain D11S_0545 PF00589 Phage integrase family D11S_0546 PF01678 Diaminopimelate epimerase D11S_0547 PF00551 Formyl transferase D11S_0548 PF02769 AIR synthase related protein, C-terminal domain D11S_0548 PF00586 AIR synthase related protein, N-terminal domain D11S_0549 PF16747 Surface-adhesin protein E D11S_0551 PF00004 ATPase family associated with various cellular activities (AAA) D11S_0551 PF10431 C-terminal, D2-small domain, of ClpB protein D11S_0551 PF02861 Clp amino terminal domain, pathogenicity island component D11S_0551 PF17871 AAA lid domain D11S_0551 PF07724 AAA domain (Cdc48 subfamily) D11S_0552 PF10531 SLBB domain D11S_0553 PF01118 Semialdehyde dehydrogenase, NAD binding domain D11S_0553 PF02774 Semialdehyde dehydrogenase, dimerisation domain D11S_0555 PF00156 Phosphoribosyl transferase domain D11S_0556 PF01106 NifU-like domain D11S_0556 PF01521 Iron-sulphur cluster biosynthesis D11S_0558 PF05525 Branched-chain amino acid transport protein D11S_0559 PF00117 Glutamine amidotransferase class-I D11S_0559 PF06418 CTP synthase N-terminus D11S_0560 PF00467 KOW motif D11S_0560 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D11S_0561 PF00281 Ribosomal protein L5 D11S_0561 PF00673 ribosomal L5P family C-terminus D11S_0562 PF00410 Ribosomal protein S8 D11S_0563 PF00347 Ribosomal protein L6 D11S_0564 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D11S_0565 PF00333 Ribosomal protein S5, N-terminal domain D11S_0565 PF03719 Ribosomal protein S5, C-terminal domain D11S_0566 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D11S_0567 PF00344 SecY translocase D11S_0568 PF00444 Ribosomal protein L36 D11S_0569 PF00416 Ribosomal protein S13/S18 D11S_0570 PF00411 Ribosomal protein S11 D11S_0571 PF01479 S4 domain D11S_0571 PF00163 Ribosomal protein S4/S9 N-terminal domain D11S_0572 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D11S_0572 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D11S_0572 PF01000 RNA polymerase Rpb3/RpoA insert domain D11S_0573 PF01196 Ribosomal protein L17 D11S_0574 PF03222 Tryptophan/tyrosine permease family D11S_0575 PF00149 Calcineurin-like phosphoesterase D11S_0576 PF13521 AAA domain D11S_0576 PF01467 Cytidylyltransferase-like D11S_0577 PF01206 Sulfurtransferase TusA D11S_0581 PF02386 Cation transport protein D11S_0582 PF12724 Flavodoxin domain D11S_0596 PF01075 Glycosyltransferase family 9 (heptosyltransferase) D11S_0597 PF00206 Lyase D11S_0597 PF10415 Fumarase C C-terminus D11S_0599 PF00166 Chaperonin 10 Kd subunit D11S_0600 PF00118 TCP-1/cpn60 chaperonin family D11S_0601 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D11S_0601 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D11S_0604 PF13333 Integrase core domain D11S_0604 PF00665 Integrase core domain D11S_0604 PF13276 HTH-like domain D11S_0607 PF01219 Prokaryotic diacylglycerol kinase D11S_0608 PF04607 Region found in RelA / SpoT proteins D11S_0608 PF02824 TGS domain D11S_0608 PF13291 ACT domain D11S_0609 PF05958 tRNA (Uracil-5-)-methyltransferase D11S_0609 PF01938 TRAM domain D11S_0610 PF11967 Recombination protein O N terminal D11S_0610 PF02565 Recombination protein O C terminal D11S_0611 PF00889 Elongation factor TS D11S_0612 PF00318 Ribosomal protein S2 D11S_0614 PF01571 Aminomethyltransferase folate-binding domain D11S_0615 PF03755 YicC-like family, N-terminal region D11S_0615 PF08340 Domain of unknown function (DUF1732) D11S_0616 PF01138 3' exoribonuclease family, domain 1 D11S_0616 PF03725 3' exoribonuclease family, domain 2 D11S_0617 PF00156 Phosphoribosyl transferase domain D11S_0618 PF00226 DnaJ domain D11S_0618 PF05099 Tellurite resistance protein TerB D11S_0619 PF01207 Dihydrouridine synthase (Dus) D11S_0620 PF00005 ABC transporter D11S_0621 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0622 PF01547 Bacterial extracellular solute-binding protein D11S_0623 PF04320 Protein with unknown function (DUF469) D11S_0624 PF02390 Putative methyltransferase D11S_0625 PF14815 NUDIX domain D11S_0625 PF00730 HhH-GPD superfamily base excision DNA repair protein D11S_0626 PF04362 Bacterial Fe(2+) trafficking D11S_0627 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain D11S_0627 PF01464 Transglycosylase SLT domain D11S_0631 PF03923 Uncharacterized lipoprotein D11S_0632 PF01722 BolA-like protein D11S_0635 PF11973 NQRA C-terminal domain D11S_0635 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) D11S_0636 PF03116 NQR2, RnfD, RnfE family D11S_0637 PF04205 FMN-binding domain D11S_0638 PF02508 Rnf-Nqr subunit, membrane protein D11S_0639 PF02508 Rnf-Nqr subunit, membrane protein D11S_0640 PF00175 Oxidoreductase NAD-binding domain D11S_0640 PF00970 Oxidoreductase FAD-binding domain D11S_0640 PF00111 2Fe-2S iron-sulfur cluster binding domain D11S_0642 PF02424 ApbE family D11S_0643 PF04400 (Na+)-NQR maturation NqrM D11S_0646 PF00113 Enolase, C-terminal TIM barrel domain D11S_0646 PF03952 Enolase, N-terminal domain D11S_0647 PF03652 Holliday junction resolvase D11S_0648 PF02622 Uncharacterized ACR, COG1678 D11S_0649 PF04452 RNA methyltransferase D11S_0651 PF01340 Met Apo-repressor, MetJ D11S_0652 PF00483 Nucleotidyl transferase D11S_0653 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D11S_0653 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D11S_0653 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D11S_0653 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D11S_0654 PF02599 Global regulator protein family D11S_0655 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D11S_0655 PF02272 DHHA1 domain D11S_0655 PF01411 tRNA synthetases class II (A) D11S_0656 PF00582 Universal stress protein family D11S_0657 PF03819 MazG nucleotide pyrophosphohydrolase domain D11S_0659 PF00884 Sulfatase D11S_0659 PF11893 Domain of unknown function (DUF3413) D11S_0660 PF07208 Protein of unknown function (DUF1414) D11S_0661 PF04245 37-kD nucleoid-associated bacterial protein D11S_0662 PF04355 SmpA / OmlA family D11S_0663 PF00072 Response regulator receiver domain D11S_0663 PF00486 Transcriptional regulatory protein, C terminal D11S_0664 PF16527 Two-component sensor protein CpxA, periplasmic domain D11S_0664 PF00672 HAMP domain D11S_0664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_0664 PF00512 His Kinase A (phospho-acceptor) domain D11S_0665 PF03616 Sodium/glutamate symporter D11S_0666 PF02580 D-Tyr-tRNA(Tyr) deacylase D11S_0667 PF03631 Virulence factor BrkB D11S_0668 PF02810 SEC-C motif D11S_0669 PF03473 MOSC domain D11S_0670 PF05872 Bacterial protein of unknown function (DUF853) D11S_0672 PF03466 LysR substrate binding domain D11S_0672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0673 PF00248 Aldo/keto reductase family D11S_0674 PF00248 Aldo/keto reductase family D11S_0675 PF00135 Carboxylesterase family D11S_0678 PF03466 LysR substrate binding domain D11S_0678 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0681 PF01380 SIS domain D11S_0682 PF08220 DeoR-like helix-turn-helix domain D11S_0682 PF00455 DeoR C terminal sensor domain D11S_0683 PF00216 Bacterial DNA-binding protein D11S_0684 PF04222 Protein of unknown function (DUF416) D11S_0685 PF01208 Uroporphyrinogen decarboxylase (URO-D) D11S_0689 PF01293 Phosphoenolpyruvate carboxykinase D11S_0690 PF02541 Ppx/GppA phosphatase family D11S_0691 PF04357 TamB, inner membrane protein subunit of TAM complex D11S_0692 PF17243 POTRA domain TamA domain 1 D11S_0692 PF01103 Surface antigen D11S_0693 PF00196 Bacterial regulatory proteins, luxR family D11S_0693 PF00072 Response regulator receiver domain D11S_0694 PF12633 Adenylate cyclase NT domain D11S_0694 PF01295 Adenylate cyclase, class-I D11S_0695 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D11S_0695 PF03900 Porphobilinogen deaminase, C-terminal domain D11S_0696 PF02602 Uroporphyrinogen-III synthase HemD D11S_0697 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase D11S_0698 PF07219 HemY protein N-terminus D11S_0699 PF02592 Putative vitamin uptake transporter D11S_0701 PF04542 Sigma-70 region 2 D11S_0701 PF08281 Sigma-70, region 4 D11S_0703 PF03449 Transcription elongation factor, N-terminal D11S_0703 PF01272 Transcription elongation factor, GreA/GreB, C-term D11S_0705 PF00300 Histidine phosphatase superfamily (branch 1) D11S_0709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_0709 PF03466 LysR substrate binding domain D11S_0710 PF17674 HHH domain D11S_0710 PF00575 S1 RNA binding domain D11S_0710 PF09371 Tex-like protein N-terminal domain D11S_0710 PF16921 Tex protein YqgF-like domain D11S_0711 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D11S_0711 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D11S_0712 PF02653 Branched-chain amino acid transport system / permease component D11S_0713 PF00005 ABC transporter D11S_0722 PF00485 Phosphoribulokinase / Uridine kinase family D11S_0723 PF18053 DNA gyrase B subunit insert domain D11S_0723 PF00986 DNA gyrase B subunit, carboxyl terminus D11S_0723 PF00204 DNA gyrase B D11S_0723 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_0723 PF01751 Toprim domain D11S_0724 PF00270 DEAD/DEAH box helicase D11S_0724 PF00271 Helicase conserved C-terminal domain D11S_0724 PF00570 HRDC domain D11S_0724 PF16124 RecQ zinc-binding D11S_0724 PF09382 RQC domain D11S_0725 PF01491 Frataxin-like domain D11S_0727 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D11S_0727 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D11S_0728 PF07274 Protein of unknown function (DUF1440) D11S_0729 PF03352 Methyladenine glycosylase D11S_0730 PF03968 OstA-like protein D11S_0730 PF04453 LPS transport system D D11S_0732 PF00156 Phosphoribosyl transferase domain D11S_0733 PF01546 Peptidase family M20/M25/M40 D11S_0733 PF07687 Peptidase dimerisation domain D11S_0734 PF00106 short chain dehydrogenase D11S_0735 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D11S_0737 PF17188 MucB/RseB C-terminal domain D11S_0737 PF03888 MucB/RseB N-terminal domain D11S_0738 PF03872 Anti sigma-E protein RseA, N-terminal domain D11S_0738 PF03873 Anti sigma-E protein RseA, C-terminal domain D11S_0739 PF04542 Sigma-70 region 2 D11S_0739 PF08281 Sigma-70, region 4 D11S_0740 PF03937 Flavinator of succinate dehydrogenase D11S_0741 PF00893 Small Multidrug Resistance protein D11S_0742 PF03129 Anticodon binding domain D11S_0742 PF04073 Aminoacyl-tRNA editing domain D11S_0742 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D11S_0743 PF12390 Selenocysteine synthase N terminal D11S_0743 PF03841 L-seryl-tRNA selenium transferase D11S_0744 PF09107 Elongation factor SelB, winged helix D11S_0744 PF00009 Elongation factor Tu GTP binding domain D11S_0744 PF03144 Elongation factor Tu domain 2 D11S_0744 PF09106 Elongation factor SelB, winged helix D11S_0748 PF00849 RNA pseudouridylate synthase D11S_0749 PF00209 Sodium:neurotransmitter symporter family D11S_0758 PF00437 Type II/IV secretion system protein D11S_0761 PF13629 Pilus formation protein N terminal region D11S_0761 PF00263 Bacterial type II and III secretion system protein D11S_0761 PF04972 BON domain D11S_0766 PF02130 Uncharacterized protein family UPF0054 D11S_0768 PF13718 GNAT acetyltransferase 2 D11S_0768 PF17176 tRNA-binding domain D11S_0768 PF05127 Helicase D11S_0770 PF17757 UvrB interaction domain D11S_0770 PF02559 CarD-like/TRCF domain D11S_0770 PF03461 TRCF domain D11S_0770 PF00270 DEAD/DEAH box helicase D11S_0770 PF00271 Helicase conserved C-terminal domain D11S_0771 PF13580 SIS domain D11S_0772 PF00005 ABC transporter D11S_0773 PF00497 Bacterial extracellular solute-binding proteins, family 3 D11S_0774 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0775 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0776 PF02554 Carbon starvation protein CstA D11S_0777 PF02381 MraZ protein, putative antitoxin-like D11S_0778 PF01795 MraW methylase family D11S_0779 PF04999 Cell division protein FtsL D11S_0780 PF00905 Penicillin binding protein transpeptidase domain D11S_0780 PF03717 Penicillin-binding Protein dimerisation domain D11S_0781 PF02875 Mur ligase family, glutamate ligase domain D11S_0781 PF08245 Mur ligase middle domain D11S_0781 PF01225 Mur ligase family, catalytic domain D11S_0782 PF01225 Mur ligase family, catalytic domain D11S_0782 PF02875 Mur ligase family, glutamate ligase domain D11S_0782 PF08245 Mur ligase middle domain D11S_0783 PF00953 Glycosyl transferase family 4 D11S_0783 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D11S_0784 PF02875 Mur ligase family, glutamate ligase domain D11S_0784 PF08245 Mur ligase middle domain D11S_0785 PF01098 Cell cycle protein D11S_0786 PF03033 Glycosyltransferase family 28 N-terminal domain D11S_0786 PF04101 Glycosyltransferase family 28 C-terminal domain D11S_0787 PF08245 Mur ligase middle domain D11S_0787 PF01225 Mur ligase family, catalytic domain D11S_0787 PF02875 Mur ligase family, glutamate ligase domain D11S_0788 PF07478 D-ala D-ala ligase C-terminus D11S_0788 PF01820 D-ala D-ala ligase N-terminus D11S_0789 PF08478 POTRA domain, FtsQ-type D11S_0789 PF03799 Cell division protein FtsQ D11S_0790 PF02491 SHS2 domain inserted in FTSA D11S_0791 PF00091 Tubulin/FtsZ family, GTPase domain D11S_0791 PF12327 FtsZ family, C-terminal domain D11S_0792 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase D11S_0795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_0795 PF00183 Hsp90 protein D11S_0796 PF03960 ArsC family D11S_0797 PF07687 Peptidase dimerisation domain D11S_0797 PF01546 Peptidase family M20/M25/M40 D11S_0798 PF02557 D-alanyl-D-alanine carboxypeptidase D11S_0799 PF00293 NUDIX domain D11S_0800 PF00149 Calcineurin-like phosphoesterase D11S_0805 PF06508 Queuosine biosynthesis protein QueC D11S_0806 PF13635 Domain of unknown function (DUF4143) D11S_0806 PF13173 AAA domain D11S_0807 PF00107 Zinc-binding dehydrogenase D11S_0807 PF08240 Alcohol dehydrogenase GroES-like domain D11S_0808 PF10672 S-adenosylmethionine-dependent methyltransferase D11S_0808 PF02926 THUMP domain D11S_0808 PF01170 Putative RNA methylase family UPF0020 D11S_0809 PF02313 Fumarate reductase subunit D D11S_0810 PF02300 Fumarate reductase subunit C D11S_0811 PF13085 2Fe-2S iron-sulfur cluster binding domain D11S_0811 PF13183 4Fe-4S dicluster domain D11S_0812 PF00890 FAD binding domain D11S_0812 PF02910 Fumarate reductase flavoprotein C-term D11S_0814 PF00152 tRNA synthetases class II (D, K and N) D11S_0815 PF00005 ABC transporter D11S_0816 PF01032 FecCD transport family D11S_0817 PF01032 FecCD transport family D11S_0818 PF01497 Periplasmic binding protein D11S_0819 PF00149 Calcineurin-like phosphoesterase D11S_0821 PF13662 Toprim domain D11S_0821 PF02132 RecR protein D11S_0822 PF01131 DNA topoisomerase D11S_0822 PF01751 Toprim domain D11S_0824 PF03840 Preprotein translocase SecG subunit D11S_0826 PF00589 Phage integrase family D11S_0826 PF13356 Arm DNA-binding domain D11S_0829 PF00912 Transglycosylase D11S_0830 PF01371 Trp repressor protein D11S_0831 PF14718 Soluble lytic murein transglycosylase L domain D11S_0831 PF01464 Transglycosylase SLT domain D11S_0832 PF03795 YCII-related domain D11S_0833 PF03061 Thioesterase superfamily D11S_0834 PF04279 Intracellular septation protein A D11S_0836 PF03922 OmpW family D11S_0838 PF02463 RecF/RecN/SMC N terminal domain D11S_0839 PF01513 ATP-NAD kinase D11S_0841 PF01025 GrpE D11S_0842 PF04886 PT repeat D11S_0842 PF00593 TonB dependent receptor D11S_0842 PF07715 TonB-dependent Receptor Plug Domain D11S_0843 PF01266 FAD dependent oxidoreductase D11S_0843 PF05430 S-adenosyl-L-methionine-dependent methyltransferase D11S_0844 PF00109 Beta-ketoacyl synthase, N-terminal domain D11S_0844 PF02801 Beta-ketoacyl synthase, C-terminal domain D11S_0846 PF18415 Histidine kinase receptor ArcB trans-membrane domain D11S_0846 PF00989 PAS fold D11S_0846 PF01627 Hpt domain D11S_0846 PF00512 His Kinase A (phospho-acceptor) domain D11S_0846 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_0846 PF00072 Response regulator receiver domain D11S_0847 PF02653 Branched-chain amino acid transport system / permease component D11S_0848 PF00005 ABC transporter D11S_0849 PF13407 Periplasmic binding protein domain D11S_0850 PF00356 Bacterial regulatory proteins, lacI family D11S_0851 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D11S_0851 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D11S_0852 PF10509 Galactokinase galactose-binding signature D11S_0852 PF08544 GHMP kinases C terminal D11S_0852 PF00288 GHMP kinases N terminal domain D11S_0853 PF01263 Aldose 1-epimerase D11S_0856 PF00939 Sodium:sulfate symporter transmembrane region D11S_0857 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase D11S_0857 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase D11S_0858 PF04223 Citrate lyase, alpha subunit (CitF) D11S_0859 PF03328 HpcH/HpaI aldolase/citrate lyase family D11S_0860 PF06857 Malonate decarboxylase delta subunit (MdcD) D11S_0861 PF08218 Citrate lyase ligase C-terminal domain D11S_0863 PF00571 CBS domain D11S_0863 PF03471 Transporter associated domain D11S_0864 PF00795 Carbon-nitrogen hydrolase D11S_0865 PF01176 Translation initiation factor 1A / IF-1 D11S_0867 PF12404 Peptidase D11S_0867 PF00883 Cytosol aminopeptidase family, catalytic domain D11S_0868 PF00334 Nucleoside diphosphate kinase D11S_0869 PF02838 Glycosyl hydrolase family 20, domain 2 D11S_0869 PF00728 Glycosyl hydrolase family 20, catalytic domain D11S_0869 PF03173 Putative carbohydrate binding domain D11S_0869 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain D11S_0871 PF10609 NUBPL iron-transfer P-loop NTPase D11S_0872 PF01588 Putative tRNA binding domain D11S_0872 PF09334 tRNA synthetases class I (M) D11S_0873 PF04384 Iron-sulphur cluster assembly D11S_0874 PF00111 2Fe-2S iron-sulfur cluster binding domain D11S_0875 PF00012 Hsp70 protein D11S_0876 PF07743 HSCB C-terminal oligomerisation domain D11S_0877 PF01521 Iron-sulphur cluster biosynthesis D11S_0878 PF01592 NifU-like N terminal domain D11S_0879 PF00266 Aminotransferase class-V D11S_0880 PF02082 Transcriptional regulator D11S_0881 PF00588 SpoU rRNA Methylase family D11S_0882 PF00459 Inositol monophosphatase family D11S_0884 PF00005 ABC transporter D11S_0884 PF08402 TOBE domain D11S_0885 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0888 PF00485 Phosphoribulokinase / Uridine kinase family D11S_0889 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) D11S_0891 PF07690 Major Facilitator Superfamily D11S_0892 PF01926 50S ribosome-binding GTPase D11S_0892 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D11S_0893 PF01556 DnaJ C terminal domain D11S_0893 PF00226 DnaJ domain D11S_0895 PF00709 Adenylosuccinate synthetase D11S_0896 PF08003 Protein of unknown function (DUF1698) D11S_0897 PF00474 Sodium:solute symporter family D11S_0898 PF00575 S1 RNA binding domain D11S_0898 PF10150 Ribonuclease E/G family D11S_0899 PF13417 Glutathione S-transferase, N-terminal domain D11S_0899 PF04399 Glutaredoxin 2, C terminal domain D11S_0900 PF02146 Sir2 family D11S_0906 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D11S_0908 PF03498 Cytolethal distending toxin A/C domain D11S_0909 PF03372 Endonuclease/Exonuclease/phosphatase family D11S_0916 PF01066 CDP-alcohol phosphatidyltransferase D11S_0917 PF01053 Cys/Met metabolism PLP-dependent enzyme D11S_0918 PF13609 Gram-negative porin D11S_0920 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D11S_0921 PF00226 DnaJ domain D11S_0921 PF01556 DnaJ C terminal domain D11S_0921 PF00684 DnaJ central domain D11S_0922 PF00012 Hsp70 protein D11S_0923 PF06097 Bacterial protein of unknown function (DUF945) D11S_0924 PF00750 tRNA synthetases class I (R) D11S_0924 PF05746 DALR anticodon binding domain D11S_0924 PF03485 Arginyl tRNA synthetase N terminal domain D11S_0925 PF06185 YecM protein D11S_0926 PF05433 Glycine zipper 2TM domain D11S_0927 PF03462 PCRF domain D11S_0927 PF00472 RF-1 domain D11S_0928 PF17827 PrmC N-terminal domain D11S_0928 PF13847 Methyltransferase domain D11S_0929 PF00793 DAHP synthetase I family D11S_0930 PF00877 NlpC/P60 family D11S_0931 PF05166 YcgL domain D11S_0932 PF03775 Septum formation inhibitor MinC, C-terminal domain D11S_0932 PF05209 Septum formation inhibitor MinC, N-terminal domain D11S_0934 PF00300 Histidine phosphatase superfamily (branch 1) D11S_0935 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D11S_0935 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D11S_0935 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D11S_0935 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D11S_0936 PF00809 Pterin binding enzyme D11S_0937 PF11798 IMS family HHH motif D11S_0937 PF00817 impB/mucB/samB family D11S_0939 PF00717 Peptidase S24-like D11S_0941 PF00478 IMP dehydrogenase / GMP reductase domain D11S_0941 PF00571 CBS domain D11S_0942 PF03099 Biotin/lipoate A/B protein ligase family D11S_0942 PF02237 Biotin protein ligase C terminal domain D11S_0949 PF00005 ABC transporter D11S_0950 PF00005 ABC transporter D11S_0950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D11S_0951 PF12911 N-terminal TM domain of oligopeptide transport permease C D11S_0951 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0952 PF00528 Binding-protein-dependent transport system inner membrane component D11S_0953 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D11S_0954 PF04317 YcjX-like family, DUF463 D11S_0955 PF05128 Domain of unknown function (DUF697) D11S_0956 PF18024 Helix-turn-helix domain D11S_0956 PF00158 Sigma-54 interaction domain D11S_0959 PF17209 Hfq protein D11S_0961 PF08676 MutL C terminal dimerisation domain D11S_0961 PF01119 DNA mismatch repair protein, C-terminal domain D11S_0962 PF01476 LysM domain D11S_0962 PF01520 N-acetylmuramoyl-L-alanine amidase D11S_0963 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D11S_0966 PF00535 Glycosyl transferase family 2 D11S_0967 PF17284 Spermidine synthase tetramerisation domain D11S_0969 PF00884 Sulfatase D11S_0971 PF00929 Exonuclease D11S_0972 PF03193 RsgA GTPase D11S_0973 PF00381 PTS HPr component phosphorylation site D11S_0974 PF00391 PEP-utilising enzyme, mobile domain D11S_0974 PF02896 PEP-utilising enzyme, TIM barrel domain D11S_0974 PF05524 PEP-utilising enzyme, N-terminal D11S_0975 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D11S_0976 PF01432 Peptidase family M3 D11S_0977 PF04304 Protein of unknown function (DUF454) D11S_0978 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D11S_0979 PF01063 Amino-transferase class IV D11S_0980 PF00425 chorismate binding enzyme D11S_0981 PF00117 Glutamine amidotransferase class-I D11S_0982 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D11S_0982 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D11S_0983 PF12704 MacB-like periplasmic core domain D11S_0983 PF02687 FtsX-like permease family D11S_0984 PF00005 ABC transporter D11S_0985 PF02687 FtsX-like permease family D11S_0985 PF12704 MacB-like periplasmic core domain D11S_0986 PF00793 DAHP synthetase I family D11S_0988 PF03796 DnaB-like helicase C terminal domain D11S_0988 PF00772 DnaB-like helicase N terminal domain D11S_0989 PF01168 Alanine racemase, N-terminal domain D11S_0989 PF00842 Alanine racemase, C-terminal domain D11S_0990 PF00342 Phosphoglucose isomerase D11S_0991 PF00885 6,7-dimethyl-8-ribityllumazine synthase D11S_0992 PF01029 NusB family D11S_0993 PF02769 AIR synthase related protein, C-terminal domain D11S_0993 PF00586 AIR synthase related protein, N-terminal domain D11S_0994 PF04608 Phosphatidylglycerophosphatase A D11S_0995 PF01810 LysE type translocator D11S_0996 PF05173 Dihydrodipicolinate reductase, C-terminus D11S_0996 PF01113 Dihydrodipicolinate reductase, N-terminus D11S_0998 PF00111 2Fe-2S iron-sulfur cluster binding domain D11S_1000 PF00268 Ribonucleotide reductase, small chain D11S_1001 PF02867 Ribonucleotide reductase, barrel domain D11S_1001 PF03477 ATP cone domain D11S_1001 PF00317 Ribonucleotide reductase, all-alpha domain D11S_1005 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1006 PF00005 ABC transporter D11S_1006 PF08402 TOBE domain D11S_1008 PF00128 Alpha amylase, catalytic domain D11S_1009 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1010 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1010 PF14785 Maltose transport system permease protein MalF P2 domain D11S_1012 PF01547 Bacterial extracellular solute-binding protein D11S_1013 PF00005 ABC transporter D11S_1013 PF17912 MalK OB fold domain D11S_1014 PF02264 LamB porin D11S_1015 PF07148 Maltose operon periplasmic protein precursor (MalM) D11S_1017 PF00899 ThiF family D11S_1018 PF00994 Probable molybdopterin binding domain D11S_1018 PF03454 MoeA C-terminal region (domain IV) D11S_1018 PF03453 MoeA N-terminal region (domain I and II) D11S_1019 PF01227 GTP cyclohydrolase I D11S_1020 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D11S_1021 PF03449 Transcription elongation factor, N-terminal D11S_1021 PF01272 Transcription elongation factor, GreA/GreB, C-term D11S_1022 PF01985 CRS1 / YhbY (CRM) domain D11S_1023 PF05973 Phage derived protein Gp49-like (DUF891) D11S_1024 PF01381 Helix-turn-helix D11S_1025 PF00677 Lumazine binding domain D11S_1026 PF01554 MatE D11S_1027 PF04073 Aminoacyl-tRNA editing domain D11S_1029 PF08942 Domain of unknown function (DUF1919) D11S_1040 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D11S_1040 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D11S_1042 PF01523 Putative modulator of DNA gyrase D11S_1043 PF00207 Alpha-2-macroglobulin family D11S_1043 PF17962 Bacterial macroglobulin domain 6 D11S_1043 PF07703 Alpha-2-macroglobulin bait region domain D11S_1043 PF01835 MG2 domain D11S_1043 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain D11S_1043 PF11974 Bacterial alpha-2-macroglobulin MG3 domain D11S_1043 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain D11S_1044 PF03601 Conserved hypothetical protein 698 D11S_1045 PF00912 Transglycosylase D11S_1045 PF06832 Penicillin-Binding Protein C-terminus Family D11S_1045 PF00905 Penicillin binding protein transpeptidase domain D11S_1046 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D11S_1047 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D11S_1048 PF03611 PTS system sugar-specific permease component D11S_1050 PF08220 DeoR-like helix-turn-helix domain D11S_1050 PF00455 DeoR C terminal sensor domain D11S_1051 PF01261 Xylose isomerase-like TIM barrel D11S_1052 PF00596 Class II Aldolase and Adducin N-terminal domain D11S_1053 PF03222 Tryptophan/tyrosine permease family D11S_1055 PF02836 Glycosyl hydrolases family 2, TIM barrel domain D11S_1055 PF02837 Glycosyl hydrolases family 2, sugar binding domain D11S_1055 PF02929 Beta galactosidase small chain D11S_1055 PF16353 Domain of unknown function(DUF4981) D11S_1055 PF00703 Glycosyl hydrolases family 2 D11S_1056 PF00462 Glutaredoxin D11S_1057 PF00881 Nitroreductase family D11S_1058 PF18030 RimK PreATP-grasp domain D11S_1058 PF08443 RimK-like ATP-grasp domain D11S_1059 PF05728 Uncharacterised protein family (UPF0227) D11S_1060 PF16036 Chalcone isomerase-like D11S_1061 PF00206 Lyase D11S_1061 PF10415 Fumarase C C-terminus D11S_1062 PF04364 DNA polymerase III chi subunit, HolC D11S_1066 PF10458 Valyl tRNA synthetase tRNA binding arm D11S_1066 PF00133 tRNA synthetases class I (I, L, M and V) D11S_1066 PF08264 Anticodon-binding domain of tRNA D11S_1071 PF07690 Major Facilitator Superfamily D11S_1074 PF00210 Ferritin-like domain D11S_1075 PF00773 RNB domain D11S_1075 PF08206 Ribonuclease B OB domain D11S_1075 PF00575 S1 RNA binding domain D11S_1077 PF01784 NIF3 (NGG1p interacting factor 3) D11S_1078 PF04055 Radical SAM superfamily D11S_1079 PF01242 6-pyruvoyl tetrahydropterin synthase D11S_1080 PF00152 tRNA synthetases class II (D, K and N) D11S_1080 PF01336 OB-fold nucleic acid binding domain D11S_1081 PF00472 RF-1 domain D11S_1081 PF03462 PCRF domain D11S_1083 PF13098 Thioredoxin-like domain D11S_1083 PF10411 Disulfide bond isomerase protein N-terminus D11S_1084 PF02272 DHHA1 domain D11S_1084 PF01368 DHH family D11S_1084 PF17768 RecJ OB domain D11S_1086 PF01048 Phosphorylase superfamily D11S_1087 PF10670 Domain of unknown function (DUF4198) D11S_1089 PF01891 Cobalt uptake substrate-specific transmembrane region D11S_1091 PF00005 ABC transporter D11S_1093 PF01924 Hydrogenase formation hypA family D11S_1094 PF02769 AIR synthase related protein, C-terminal domain D11S_1094 PF00586 AIR synthase related protein, N-terminal domain D11S_1096 PF08501 Shikimate dehydrogenase substrate binding domain D11S_1097 PF02219 Methylenetetrahydrofolate reductase D11S_1098 PF03739 Lipopolysaccharide export system permease LptF/LptG D11S_1099 PF03739 Lipopolysaccharide export system permease LptF/LptG D11S_1100 PF00883 Cytosol aminopeptidase family, catalytic domain D11S_1100 PF02789 Cytosol aminopeptidase family, N-terminal domain D11S_1101 PF00005 ABC transporter D11S_1101 PF03459 TOBE domain D11S_1102 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1104 PF03459 TOBE domain D11S_1104 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_1105 PF00939 Sodium:sulfate symporter transmembrane region D11S_1107 PF13180 PDZ domain D11S_1108 PF01872 RibD C-terminal domain D11S_1108 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D11S_1109 PF03477 ATP cone domain D11S_1110 PF01728 FtsJ-like methyltransferase D11S_1110 PF18125 RlmM ferredoxin-like domain D11S_1111 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_1111 PF03466 LysR substrate binding domain D11S_1112 PF01063 Amino-transferase class IV D11S_1114 PF00056 lactate/malate dehydrogenase, NAD binding domain D11S_1114 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D11S_1115 PF02863 Arginine repressor, C-terminal domain D11S_1115 PF01316 Arginine repressor, DNA binding domain D11S_1116 PF08338 Domain of unknown function (DUF1731) D11S_1116 PF01370 NAD dependent epimerase/dehydratase family D11S_1117 PF02508 Rnf-Nqr subunit, membrane protein D11S_1118 PF04060 Putative Fe-S cluster D11S_1119 PF13375 RnfC Barrel sandwich hybrid domain D11S_1119 PF12838 4Fe-4S dicluster domain D11S_1119 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit D11S_1120 PF03116 NQR2, RnfD, RnfE family D11S_1121 PF04205 FMN-binding domain D11S_1122 PF02508 Rnf-Nqr subunit, membrane protein D11S_1123 PF00633 Helix-hairpin-helix motif D11S_1123 PF10576 Iron-sulfur binding domain of endonuclease III D11S_1123 PF00730 HhH-GPD superfamily base excision DNA repair protein D11S_1124 PF00209 Sodium:neurotransmitter symporter family D11S_1125 PF00950 ABC 3 transport family D11S_1126 PF00005 ABC transporter D11S_1127 PF04225 Opacity-associated protein A LysM-like domain D11S_1127 PF01551 Peptidase family M23 D11S_1128 PF00005 ABC transporter D11S_1129 PF01032 FecCD transport family D11S_1130 PF01032 FecCD transport family D11S_1131 PF01497 Periplasmic binding protein D11S_1132 PF02872 5'-nucleotidase, C-terminal domain D11S_1132 PF00149 Calcineurin-like phosphoesterase D11S_1133 PF04216 Protein involved in formate dehydrogenase formation D11S_1135 PF04076 Bacterial OB fold (BOF) protein D11S_1136 PF00072 Response regulator receiver domain D11S_1136 PF00486 Transcriptional regulatory protein, C terminal D11S_1137 PF00512 His Kinase A (phospho-acceptor) domain D11S_1137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_1137 PF08521 Two-component sensor kinase N-terminal D11S_1139 PF10688 Bacterial inner membrane protein D11S_1140 PF00764 Arginosuccinate synthase D11S_1141 PF01370 NAD dependent epimerase/dehydratase family D11S_1143 PF00009 Elongation factor Tu GTP binding domain D11S_1143 PF16658 Class II release factor RF3, C-terminal domain D11S_1143 PF03144 Elongation factor Tu domain 2 D11S_1144 PF05973 Phage derived protein Gp49-like (DUF891) D11S_1146 PF03710 Glutamate-ammonia ligase adenylyltransferase D11S_1146 PF08335 GlnD PII-uridylyltransferase D11S_1150 PF01867 CRISPR associated protein Cas1 D11S_1151 PF09827 CRISPR associated protein Cas2 D11S_1152 PF08543 Phosphomethylpyrimidine kinase D11S_1154 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1155 PF00005 ABC transporter D11S_1156 PF06968 Biotin and Thiamin Synthesis associated domain D11S_1156 PF04055 Radical SAM superfamily D11S_1157 PF00595 PDZ domain D11S_1159 PF06295 Protein of unknown function (DUF1043) D11S_1160 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding D11S_1160 PF18381 YcaO cyclodehydratase C-terminal domain D11S_1161 PF01238 Phosphomannose isomerase type I D11S_1162 PF07411 Domain of unknown function (DUF1508) D11S_1163 PF02378 Phosphotransferase system, EIIC D11S_1163 PF00367 phosphotransferase system, EIIB D11S_1163 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D11S_1165 PF16123 Hydroxyacylglutathione hydrolase C-terminus D11S_1165 PF00753 Metallo-beta-lactamase superfamily D11S_1166 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D11S_1166 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D11S_1166 PF01488 Shikimate / quinate 5-dehydrogenase D11S_1167 PF01047 MarR family D11S_1167 PF00480 ROK family D11S_1172 PF05191 Adenylate kinase, active site lid D11S_1173 PF07690 Major Facilitator Superfamily D11S_1174 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA D11S_1175 PF01370 NAD dependent epimerase/dehydratase family D11S_1176 PF05656 Protein of unknown function (DUF805) D11S_1179 PF11734 TilS substrate C-terminal domain D11S_1179 PF09179 TilS substrate binding domain D11S_1179 PF01171 PP-loop family D11S_1180 PF08543 Phosphomethylpyrimidine kinase D11S_1181 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D11S_1185 PF10711 Hypothetical protein (DUF2513) D11S_1190 PF10548 P22AR C-terminal domain D11S_1190 PF02498 BRO family, N-terminal domain D11S_1193 PF00117 Glutamine amidotransferase class-I D11S_1193 PF00958 GMP synthase C terminal domain D11S_1193 PF02540 NAD synthase D11S_1194 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ D11S_1195 PF04221 RelB antitoxin D11S_1197 PF03606 C4-dicarboxylate anaerobic carrier D11S_1199 PF02576 RimP N-terminal domain D11S_1199 PF17384 RimP C-terminal SH3 domain D11S_1200 PF13184 NusA-like KH domain D11S_1200 PF08529 NusA N-terminal domain D11S_1200 PF00575 S1 RNA binding domain D11S_1201 PF04760 Translation initiation factor IF-2, N-terminal region D11S_1201 PF11987 Translation-initiation factor 2 D11S_1201 PF00009 Elongation factor Tu GTP binding domain D11S_1201 PF08364 Bacterial translation initiation factor IF-2 associated region D11S_1202 PF02033 Ribosome-binding factor A D11S_1203 PF09157 Pseudouridine synthase II TruB, C-terminal D11S_1203 PF16198 tRNA pseudouridylate synthase B C-terminal domain D11S_1203 PF01509 TruB family pseudouridylate synthase (N terminal domain) D11S_1206 PF00579 tRNA synthetases class I (W and Y) D11S_1206 PF01479 S4 domain D11S_1207 PF03749 Sugar fermentation stimulation protein RE domain D11S_1207 PF17746 SfsA N-terminal OB domain D11S_1208 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D11S_1208 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D11S_1208 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch D11S_1209 PF02233 NAD(P) transhydrogenase beta subunit D11S_1212 PF02661 Fic/DOC family D11S_1212 PF12728 Helix-turn-helix domain D11S_1213 PF02769 AIR synthase related protein, C-terminal domain D11S_1213 PF00586 AIR synthase related protein, N-terminal domain D11S_1215 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1216 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1218 PF02151 UvrB/uvrC motif D11S_1218 PF01541 GIY-YIG catalytic domain D11S_1218 PF08459 UvrC Helix-hairpin-helix N-terminal D11S_1219 PF02348 Cytidylyltransferase D11S_1220 PF03966 Trm112p-like protein D11S_1221 PF02606 Tetraacyldisaccharide-1-P 4'-kinase D11S_1222 PF00005 ABC transporter D11S_1222 PF00664 ABC transporter transmembrane region D11S_1223 PF03772 Competence protein D11S_1223 PF13567 Domain of unknown function (DUF4131) D11S_1223 PF00753 Metallo-beta-lactamase superfamily D11S_1224 PF01258 Prokaryotic dksA/traR C4-type zinc finger D11S_1227 PF01515 Phosphate acetyl/butaryl transferase D11S_1227 PF07085 DRTGG domain D11S_1228 PF00871 Acetokinase family D11S_1229 PF04217 Protein of unknown function, DUF412 D11S_1230 PF02674 Colicin V production protein D11S_1232 PF02446 4-alpha-glucanotransferase D11S_1233 PF00343 Carbohydrate phosphorylase D11S_1234 PF17874 MalT-like TPR region D11S_1234 PF00196 Bacterial regulatory proteins, luxR family D11S_1235 PF03848 Tellurite resistance protein TehB D11S_1235 PF09313 Domain of unknown function (DUF1971) D11S_1236 PF17831 Pyruvate dehydrogenase E1 component middle domain D11S_1236 PF00456 Transketolase, thiamine diphosphate binding domain D11S_1237 PF02817 e3 binding domain D11S_1237 PF00364 Biotin-requiring enzyme D11S_1237 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D11S_1238 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D11S_1238 PF07992 Pyridine nucleotide-disulphide oxidoreductase D11S_1240 PF00881 Nitroreductase family D11S_1241 PF01343 Peptidase family S49 D11S_1242 PF01817 Chorismate mutase type II D11S_1242 PF02153 Prephenate dehydrogenase D11S_1243 PF01300 Telomere recombination D11S_1244 PF00849 RNA pseudouridylate synthase D11S_1244 PF01479 S4 domain D11S_1245 PF03466 LysR substrate binding domain D11S_1245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_1246 PF14602 Hexapeptide repeat of succinyl-transferase D11S_1246 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal D11S_1246 PF00132 Bacterial transferase hexapeptide (six repeats) D11S_1247 PF04269 Protein of unknown function, DUF440 D11S_1249 PF00356 Bacterial regulatory proteins, lacI family D11S_1250 PF00561 alpha/beta hydrolase fold D11S_1251 PF02698 DUF218 domain D11S_1252 PF00356 Bacterial regulatory proteins, lacI family D11S_1252 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D11S_1255 PF08534 Redoxin D11S_1256 PF02683 Cytochrome C biogenesis protein transmembrane region D11S_1257 PF01625 Peptide methionine sulfoxide reductase D11S_1257 PF01641 SelR domain D11S_1258 PF00484 Carbonic anhydrase D11S_1259 PF04972 BON domain D11S_1260 PF13580 SIS domain D11S_1261 PF02021 Uncharacterised protein family UPF0102 D11S_1262 PF04348 LppC putative lipoprotein D11S_1263 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D11S_1264 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D11S_1264 PF01266 FAD dependent oxidoreductase D11S_1265 PF07992 Pyridine nucleotide-disulphide oxidoreductase D11S_1266 PF02525 Flavodoxin-like fold D11S_1267 PF08496 Peptidase family S49 N-terminal D11S_1267 PF01343 Peptidase family S49 D11S_1268 PF05736 OprF membrane domain D11S_1268 PF00691 OmpA family D11S_1270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D11S_1270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D11S_1270 PF02824 TGS domain D11S_1270 PF03129 Anticodon binding domain D11S_1271 PF18273 Type III R-M EcoP15I C-terminal domain D11S_1271 PF01555 DNA methylase D11S_1276 PF00970 Oxidoreductase FAD-binding domain D11S_1276 PF00175 Oxidoreductase NAD-binding domain D11S_1277 PF00707 Translation initiation factor IF-3, C-terminal domain D11S_1277 PF05198 Translation initiation factor IF-3, N-terminal domain D11S_1279 PF00453 Ribosomal protein L20 D11S_1284 PF08013 Tagatose 6 phosphate kinase D11S_1285 PF08220 DeoR-like helix-turn-helix domain D11S_1285 PF00455 DeoR C terminal sensor domain D11S_1286 PF02780 Transketolase, C-terminal domain D11S_1286 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D11S_1286 PF02779 Transketolase, pyrimidine binding domain D11S_1287 PF00348 Polyprenyl synthetase D11S_1288 PF02609 Exonuclease VII small subunit D11S_1289 PF01039 Carboxyl transferase domain D11S_1289 PF17848 Acetyl-coA carboxylase zinc finger domain D11S_1290 PF08245 Mur ligase middle domain D11S_1291 PF00300 Histidine phosphatase superfamily (branch 1) D11S_1292 PF13091 PLD-like domain D11S_1292 PF13396 Phospholipase_D-nuclease N-terminal D11S_1293 PF03956 Lysine exporter LysO D11S_1297 PF08274 PhnA Zinc-Ribbon D11S_1297 PF03831 PhnA domain D11S_1303 PF02321 Outer membrane efflux protein D11S_1304 PF00005 ABC transporter D11S_1304 PF12704 MacB-like periplasmic core domain D11S_1304 PF02687 FtsX-like permease family D11S_1305 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D11S_1306 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain D11S_1306 PF00749 tRNA synthetases class I (E and Q), catalytic domain D11S_1309 PF02806 Alpha amylase, C-terminal all-beta domain D11S_1309 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D11S_1309 PF00128 Alpha amylase, catalytic domain D11S_1310 PF00128 Alpha amylase, catalytic domain D11S_1310 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D11S_1310 PF18390 Glycogen debranching enzyme C-terminal domain D11S_1311 PF00483 Nucleotidyl transferase D11S_1312 PF00534 Glycosyl transferases group 1 D11S_1312 PF08323 Starch synthase catalytic domain D11S_1313 PF00343 Carbohydrate phosphorylase D11S_1315 PF09335 SNARE associated Golgi protein D11S_1316 PF01386 Ribosomal L25p family D11S_1318 PF00768 D-alanyl-D-alanine carboxypeptidase D11S_1319 PF03882 MukF winged-helix domain D11S_1319 PF17193 MukF C-terminal domain D11S_1319 PF17192 MukF middle domain D11S_1320 PF01553 Acyltransferase D11S_1320 PF00501 AMP-binding enzyme D11S_1322 PF04288 MukE-like family D11S_1323 PF04310 MukB N-terminal D11S_1323 PF16330 MukB hinge domain D11S_1325 PF00929 Exonuclease D11S_1325 PF08411 Exonuclease C-terminal D11S_1330 PF00210 Ferritin-like domain D11S_1331 PF00210 Ferritin-like domain D11S_1333 PF00027 Cyclic nucleotide-binding domain D11S_1333 PF13545 Crp-like helix-turn-helix domain D11S_1334 PF00582 Universal stress protein family D11S_1335 PF10670 Domain of unknown function (DUF4198) D11S_1336 PF01131 DNA topoisomerase D11S_1336 PF01751 Toprim domain D11S_1336 PF01396 Topoisomerase DNA binding C4 zinc finger D11S_1336 PF08272 Topoisomerase I zinc-ribbon-like D11S_1338 PF01180 Dihydroorotate dehydrogenase D11S_1339 PF01433 Peptidase family M1 domain D11S_1339 PF17432 Domain of unknown function (DUF3458_C) ARM repeats D11S_1339 PF11940 Domain of unknown function (DUF3458) Ig-like fold D11S_1340 PF00155 Aminotransferase class I and II D11S_1343 PF13533 Biotin-lipoyl like D11S_1349 PF00005 ABC transporter D11S_1351 PF03459 TOBE domain D11S_1354 PF00593 TonB dependent receptor D11S_1354 PF07715 TonB-dependent Receptor Plug Domain D11S_1355 PF00005 ABC transporter D11S_1359 PF00593 TonB dependent receptor D11S_1363 PF00877 NlpC/P60 family D11S_1364 PF00216 Bacterial DNA-binding protein D11S_1365 PF01588 Putative tRNA binding domain D11S_1365 PF03147 Ferredoxin-fold anticodon binding domain D11S_1365 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D11S_1365 PF03484 tRNA synthetase B5 domain D11S_1365 PF03483 B3/4 domain D11S_1366 PF01409 tRNA synthetases class II core domain (F) D11S_1366 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D11S_1367 PF01435 Peptidase family M48 D11S_1368 PF00571 CBS domain D11S_1368 PF01380 SIS domain D11S_1370 PF00425 chorismate binding enzyme D11S_1370 PF04715 Anthranilate synthase component I, N terminal region D11S_1372 PF14552 Tautomerase enzyme D11S_1373 PF00591 Glycosyl transferase family, a/b domain D11S_1373 PF02885 Glycosyl transferase family, helical bundle domain D11S_1374 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D11S_1374 PF00218 Indole-3-glycerol phosphate synthase D11S_1376 PF01455 HupF/HypC family D11S_1379 PF04277 Oxaloacetate decarboxylase, gamma chain D11S_1380 PF02436 Conserved carboxylase domain D11S_1380 PF00364 Biotin-requiring enzyme D11S_1380 PF00682 HMGL-like D11S_1381 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit D11S_1383 PF07715 TonB-dependent Receptor Plug Domain D11S_1383 PF00593 TonB dependent receptor D11S_1385 PF00106 short chain dehydrogenase D11S_1386 PF00291 Pyridoxal-phosphate dependent enzyme D11S_1387 PF00290 Tryptophan synthase alpha chain D11S_1388 PF03477 ATP cone domain D11S_1388 PF02867 Ribonucleotide reductase, barrel domain D11S_1388 PF00317 Ribonucleotide reductase, all-alpha domain D11S_1390 PF02887 Pyruvate kinase, alpha/beta domain D11S_1390 PF00224 Pyruvate kinase, barrel domain D11S_1391 PF03992 Antibiotic biosynthesis monooxygenase D11S_1392 PF01791 DeoC/LacD family aldolase D11S_1393 PF13407 Periplasmic binding protein domain D11S_1394 PF02653 Branched-chain amino acid transport system / permease component D11S_1395 PF02653 Branched-chain amino acid transport system / permease component D11S_1396 PF00005 ABC transporter D11S_1397 PF04198 Putative sugar-binding domain D11S_1397 PF00325 Bacterial regulatory proteins, crp family D11S_1398 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D11S_1398 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D11S_1400 PF00480 ROK family D11S_1401 PF01336 OB-fold nucleic acid binding domain D11S_1401 PF00152 tRNA synthetases class II (D, K and N) D11S_1402 PF04386 Stringent starvation protein B D11S_1403 PF13417 Glutathione S-transferase, N-terminal domain D11S_1403 PF00043 Glutathione S-transferase, C-terminal domain D11S_1404 PF02391 MoaE protein D11S_1405 PF02597 ThiS family D11S_1406 PF01967 MoaC family D11S_1407 PF06463 Molybdenum Cofactor Synthesis C D11S_1407 PF04055 Radical SAM superfamily D11S_1408 PF01933 Uncharacterised protein family UPF0052 D11S_1410 PF03575 Peptidase family S51 D11S_1411 PF02926 THUMP domain D11S_1411 PF02568 Thiamine biosynthesis protein (ThiI) D11S_1412 PF03264 NapC/NirT cytochrome c family, N-terminal region D11S_1413 PF18364 Molybdopterin oxidoreductase N-terminal domain D11S_1413 PF01568 Molydopterin dinucleotide binding domain D11S_1413 PF00384 Molybdopterin oxidoreductase D11S_1414 PF04237 YjbR D11S_1415 PF00939 Sodium:sulfate symporter transmembrane region D11S_1418 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D11S_1419 PF01416 tRNA pseudouridine synthase D11S_1421 PF00380 Ribosomal protein S9/S16 D11S_1422 PF00572 Ribosomal protein L13 D11S_1424 PF13538 UvrD-like helicase C-terminal domain D11S_1425 PF00580 UvrD/REP helicase N-terminal domain D11S_1425 PF12705 PD-(D/E)XK nuclease superfamily D11S_1425 PF13361 UvrD-like helicase C-terminal domain D11S_1426 PF02635 DsrE/DsrF-like family D11S_1428 PF07977 FabA-like domain D11S_1429 PF05362 Lon protease (S16) C-terminal proteolytic domain D11S_1429 PF13654 AAA domain D11S_1430 PF17414 MatP C-terminal ribbon-helix-helix domain D11S_1430 PF06303 MatP N-terminal domain D11S_1431 PF00313 'Cold-shock' DNA-binding domain D11S_1432 PF03701 Uncharacterised protein family (UPF0181) D11S_1433 PF00849 RNA pseudouridylate synthase D11S_1434 PF04287 tRNA pseudouridine synthase C D11S_1435 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) D11S_1436 PF14489 QueF-like protein D11S_1436 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term D11S_1437 PF14532 Sigma-54 interaction domain D11S_1437 PF00072 Response regulator receiver domain D11S_1437 PF02954 Bacterial regulatory protein, Fis family D11S_1438 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_1438 PF00672 HAMP domain D11S_1438 PF00512 His Kinase A (phospho-acceptor) domain D11S_1441 PF00005 ABC transporter D11S_1441 PF08402 TOBE domain D11S_1443 PF00005 ABC transporter D11S_1443 PF08402 TOBE domain D11S_1445 PF01728 FtsJ-like methyltransferase D11S_1446 PF01842 ACT domain D11S_1446 PF00551 Formyl transferase D11S_1447 PF00816 H-NS histone family D11S_1448 PF03553 Na+/H+ antiporter family D11S_1455 PF01177 Asp/Glu/Hydantoin racemase D11S_1456 PF04345 Chorismate lyase D11S_1457 PF00271 Helicase conserved C-terminal domain D11S_1457 PF00270 DEAD/DEAH box helicase D11S_1457 PF17191 RecG wedge domain D11S_1458 PF02824 TGS domain D11S_1458 PF13291 ACT domain D11S_1458 PF04607 Region found in RelA / SpoT proteins D11S_1459 PF01192 RNA polymerase Rpb6 D11S_1460 PF00625 Guanylate kinase D11S_1462 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D11S_1462 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D11S_1463 PF00892 EamA-like transporter family D11S_1464 PF03364 Polyketide cyclase / dehydrase and lipid transport D11S_1465 PF03658 RnfH family Ubiquitin D11S_1466 PF08007 Cupin superfamily protein D11S_1467 PF02601 Exonuclease VII, large subunit D11S_1467 PF13742 OB-fold nucleic acid binding domain D11S_1468 PF03668 P-loop ATPase protein family D11S_1469 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D11S_1470 PF00005 ABC transporter D11S_1470 PF12399 Branched-chain amino acid ATP-binding cassette transporter D11S_1471 PF03968 OstA-like protein D11S_1472 PF06835 Lipopolysaccharide-assembly, LptC-related D11S_1473 PF00005 ABC transporter D11S_1474 PF02405 Permease MlaE D11S_1475 PF02470 MlaD protein D11S_1476 PF05494 MlaC protein D11S_1477 PF13466 STAS domain D11S_1478 PF01722 BolA-like protein D11S_1479 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D11S_1480 PF04175 Protein of unknown function (DUF406) D11S_1481 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) D11S_1482 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D11S_1482 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D11S_1483 PF02976 DNA mismatch repair enzyme MutH D11S_1484 PF03741 Integral membrane protein TerC family D11S_1485 PF00120 Glutamine synthetase, catalytic domain D11S_1485 PF03951 Glutamine synthetase, beta-Grasp domain D11S_1489 PF00578 AhpC/TSA family D11S_1490 PF00701 Dihydrodipicolinate synthetase family D11S_1491 PF06804 NlpB/DapX lipoprotein D11S_1492 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1493 PF00571 CBS domain D11S_1493 PF00005 ABC transporter D11S_1494 PF01168 Alanine racemase, N-terminal domain D11S_1497 PF03447 Homoserine dehydrogenase, NAD binding domain D11S_1497 PF00696 Amino acid kinase family D11S_1497 PF13840 ACT domain D11S_1497 PF01842 ACT domain D11S_1497 PF00742 Homoserine dehydrogenase D11S_1498 PF00288 GHMP kinases N terminal domain D11S_1498 PF08544 GHMP kinases C terminal D11S_1500 PF14821 Threonine synthase N terminus D11S_1500 PF00291 Pyridoxal-phosphate dependent enzyme D11S_1501 PF01648 4'-phosphopantetheinyl transferase superfamily D11S_1502 PF01145 SPFH domain / Band 7 family D11S_1503 PF01145 SPFH domain / Band 7 family D11S_1506 PF01725 Ham1 family D11S_1507 PF01906 Putative heavy-metal-binding D11S_1508 PF06969 HemN C-terminal domain D11S_1508 PF04055 Radical SAM superfamily D11S_1509 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) D11S_1510 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D11S_1510 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D11S_1513 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D11S_1514 PF01055 Glycosyl hydrolases family 31 D11S_1514 PF13802 Galactose mutarotase-like D11S_1514 PF17137 Domain of unknown function (DUF5110) D11S_1514 PF16338 Domain of unknown function (DUF4968) D11S_1515 PF00392 Bacterial regulatory proteins, gntR family D11S_1515 PF07729 FCD domain D11S_1516 PF03786 D-mannonate dehydratase (UxuA) D11S_1520 PF00916 Sulfate permease family D11S_1520 PF01740 STAS domain D11S_1522 PF02190 ATP-dependent protease La (LON) substrate-binding domain D11S_1522 PF05362 Lon protease (S16) C-terminal proteolytic domain D11S_1522 PF00004 ATPase family associated with various cellular activities (AAA) D11S_1523 PF04539 Sigma-70 region 3 D11S_1523 PF03979 Sigma-70 factor, region 1.1 D11S_1523 PF00140 Sigma-70 factor, region 1.2 D11S_1523 PF04542 Sigma-70 region 2 D11S_1523 PF04546 Sigma-70, non-essential region D11S_1523 PF04545 Sigma-70, region 4 D11S_1524 PF08275 DNA primase catalytic core, N-terminal domain D11S_1524 PF01807 CHC2 zinc finger D11S_1524 PF08278 DNA primase DnaG DnaB-binding D11S_1524 PF10410 DnaB-helicase binding domain of primase D11S_1525 PF01165 Ribosomal protein S21 D11S_1527 PF00814 Glycoprotease family D11S_1529 PF00265 Thymidine kinase D11S_1530 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D11S_1530 PF00533 BRCA1 C Terminus (BRCT) domain D11S_1530 PF01653 NAD-dependent DNA ligase adenylation domain D11S_1530 PF12826 Helix-hairpin-helix motif D11S_1530 PF03120 NAD-dependent DNA ligase OB-fold domain D11S_1531 PF04354 ZipA, C-terminal FtsZ-binding domain D11S_1533 PF00291 Pyridoxal-phosphate dependent enzyme D11S_1536 PF03167 Uracil DNA glycosylase superfamily D11S_1537 PF01926 50S ribosome-binding GTPase D11S_1537 PF06071 Protein of unknown function (DUF933) D11S_1538 PF01195 Peptidyl-tRNA hydrolase D11S_1550 PF00953 Glycosyl transferase family 4 D11S_1551 PF00202 Aminotransferase class-III D11S_1552 PF01966 HD domain D11S_1552 PF08335 GlnD PII-uridylyltransferase D11S_1553 PF00557 Metallopeptidase family M24 D11S_1554 PF01521 Iron-sulphur cluster biosynthesis D11S_1556 PF00912 Transglycosylase D11S_1556 PF14814 Bifunctional transglycosylase second domain D11S_1556 PF00905 Penicillin binding protein transpeptidase domain D11S_1557 PF03239 Iron permease FTR1 family D11S_1558 PF10634 Fe2+ transport protein D11S_1560 PF12704 MacB-like periplasmic core domain D11S_1560 PF02687 FtsX-like permease family D11S_1562 PF12704 MacB-like periplasmic core domain D11S_1562 PF00005 ABC transporter D11S_1562 PF02687 FtsX-like permease family D11S_1563 PF00578 AhpC/TSA family D11S_1565 PF13419 Haloacid dehalogenase-like hydrolase D11S_1567 PF01609 Transposase DDE domain D11S_1569 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold D11S_1569 PF00271 Helicase conserved C-terminal domain D11S_1569 PF00270 DEAD/DEAH box helicase D11S_1569 PF11898 Domain of unknown function (DUF3418) D11S_1569 PF04408 Helicase associated domain (HA2) D11S_1570 PF04241 Protein of unknown function (DUF423) D11S_1571 PF04284 Protein of unknown function (DUF441) D11S_1572 PF00462 Glutaredoxin D11S_1573 PF01389 OmpA-like transmembrane domain D11S_1573 PF00691 OmpA family D11S_1574 PF02913 FAD linked oxidases, C-terminal domain D11S_1574 PF01565 FAD binding domain D11S_1574 PF13183 4Fe-4S dicluster domain D11S_1575 PF03061 Thioesterase superfamily D11S_1576 PF00762 Ferrochelatase D11S_1577 PF08534 Redoxin D11S_1578 PF01979 Amidohydrolase family D11S_1579 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D11S_1580 PF00701 Dihydrodipicolinate synthetase family D11S_1581 PF01380 SIS domain D11S_1581 PF01418 Helix-turn-helix domain, rpiR family D11S_1582 PF00480 ROK family D11S_1583 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase D11S_1584 PF03480 Bacterial extracellular solute-binding protein, family 7 D11S_1585 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component D11S_1585 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component D11S_1586 PF01344 Kelch motif D11S_1587 PF02378 Phosphotransferase system, EIIC D11S_1587 PF00367 phosphotransferase system, EIIB D11S_1587 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D11S_1588 PF01389 OmpA-like transmembrane domain D11S_1588 PF00691 OmpA family D11S_1589 PF02151 UvrB/uvrC motif D11S_1589 PF12344 Ultra-violet resistance protein B D11S_1589 PF04851 Type III restriction enzyme, res subunit D11S_1589 PF17757 UvrB interaction domain D11S_1589 PF00271 Helicase conserved C-terminal domain D11S_1591 PF03824 High-affinity nickel-transport protein D11S_1592 PF06226 Protein of unknown function (DUF1007) D11S_1594 PF12848 ABC transporter D11S_1594 PF00005 ABC transporter D11S_1595 PF05658 Head domain of trimeric autotransporter adhesin D11S_1595 PF03895 YadA-like membrane anchor domain D11S_1595 PF05662 Coiled stalk of trimeric autotransporter adhesin D11S_1596 PF01751 Toprim domain D11S_1596 PF00204 DNA gyrase B D11S_1596 PF00986 DNA gyrase B subunit, carboxyl terminus D11S_1596 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D11S_1598 PF03989 DNA gyrase C-terminal domain, beta-propeller D11S_1598 PF00521 DNA gyrase/topoisomerase IV, subunit A D11S_1599 PF02798 Glutathione S-transferase, N-terminal domain D11S_1599 PF00043 Glutathione S-transferase, C-terminal domain D11S_1600 PF08238 Sel1 repeat D11S_1601 PF14256 YwiC-like protein D11S_1602 PF01042 Endoribonuclease L-PSP D11S_1605 PF00535 Glycosyl transferase family 2 D11S_1609 PF00156 Phosphoribosyl transferase domain D11S_1610 PF03279 Bacterial lipid A biosynthesis acyltransferase D11S_1611 PF01925 Sulfite exporter TauE/SafE D11S_1612 PF03411 Penicillin-insensitive murein endopeptidase D11S_1613 PF01264 Chorismate synthase D11S_1614 PF12794 Mechanosensitive ion channel inner membrane domain 1 D11S_1614 PF12795 Mechanosensitive ion channel porin domain D11S_1614 PF00924 Mechanosensitive ion channel D11S_1615 PF00501 AMP-binding enzyme D11S_1616 PF03925 SeqA protein C-terminal domain D11S_1616 PF17206 SeqA protein N-terminal domain D11S_1617 PF00561 alpha/beta hydrolase fold D11S_1618 PF00258 Flavodoxin D11S_1619 PF01475 Ferric uptake regulator family D11S_1620 PF00521 DNA gyrase/topoisomerase IV, subunit A D11S_1620 PF03989 DNA gyrase C-terminal domain, beta-propeller D11S_1621 PF04247 Invasion gene expression up-regulator, SirB D11S_1622 PF01253 Translation initiation factor SUI1 D11S_1623 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D11S_1624 PF18073 Rubredoxin metal binding domain D11S_1625 PF06305 Lipopolysaccharide assembly protein A domain D11S_1626 PF00216 Bacterial DNA-binding protein D11S_1627 PF00575 S1 RNA binding domain D11S_1628 PF02224 Cytidylate kinase D11S_1629 PF04393 Protein of unknown function (DUF535) D11S_1630 PF07715 TonB-dependent Receptor Plug Domain D11S_1631 PF05193 Peptidase M16 inactive domain D11S_1631 PF00675 Insulinase (Peptidase family M16) D11S_1632 PF05437 Branched-chain amino acid transport protein (AzlD) D11S_1633 PF03591 AzlC protein D11S_1635 PF03466 LysR substrate binding domain D11S_1635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D11S_1636 PF01717 Cobalamin-independent synthase, Catalytic domain D11S_1636 PF08267 Cobalamin-independent synthase, N-terminal domain D11S_1639 PF01027 Inhibitor of apoptosis-promoting Bax1 D11S_1640 PF04358 DsrC like protein D11S_1641 PF01297 Zinc-uptake complex component A periplasmic D11S_1642 PF00005 ABC transporter D11S_1643 PF00950 ABC 3 transport family D11S_1644 PF00950 ABC 3 transport family D11S_1645 PF00708 Acylphosphatase D11S_1646 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) D11S_1647 PF02142 MGS-like domain D11S_1648 PF03733 Inner membrane component domain D11S_1649 PF12805 FUSC-like inner membrane protein yccS D11S_1652 PF05175 Methyltransferase small domain D11S_1653 PF02780 Transketolase, C-terminal domain D11S_1653 PF02779 Transketolase, pyrimidine binding domain D11S_1654 PF00456 Transketolase, thiamine diphosphate binding domain D11S_1660 PF13286 Phosphohydrolase-associated domain D11S_1660 PF01966 HD domain D11S_1661 PF04172 LrgB-like family D11S_1662 PF03788 LrgA family D11S_1664 PF00565 Staphylococcal nuclease homologue D11S_1665 PF00266 Aminotransferase class-V D11S_1666 PF02657 Fe-S metabolism associated domain D11S_1667 PF00294 pfkB family carbohydrate kinase D11S_1667 PF01467 Cytidylyltransferase-like D11S_1668 PF03279 Bacterial lipid A biosynthesis acyltransferase D11S_1670 PF02525 Flavodoxin-like fold D11S_1672 PF16200 C-terminal region of band_7 D11S_1672 PF01145 SPFH domain / Band 7 family D11S_1676 PF03150 Di-haem cytochrome c peroxidase D11S_1676 PF00034 Cytochrome c D11S_1676 PF14376 Haem-binding domain D11S_1677 PF00570 HRDC domain D11S_1677 PF01612 3'-5' exonuclease D11S_1678 PF13193 AMP-binding enzyme C-terminal domain D11S_1678 PF00501 AMP-binding enzyme D11S_1679 PF03843 Outer membrane lipoprotein Slp family D11S_1680 PF00814 Glycoprotease family D11S_1681 PF06733 DEAD_2 D11S_1681 PF13307 Helicase C-terminal domain D11S_1682 PF01263 Aldose 1-epimerase D11S_1684 PF07992 Pyridine nucleotide-disulphide oxidoreductase D11S_1685 PF00005 ABC transporter D11S_1685 PF00664 ABC transporter transmembrane region D11S_1686 PF00005 ABC transporter D11S_1686 PF00664 ABC transporter transmembrane region D11S_1690 PF07273 Protein of unknown function (DUF1439) D11S_1691 PF00480 ROK family D11S_1692 PF01569 PAP2 superfamily D11S_1693 PF00925 GTP cyclohydrolase II D11S_1697 PF05117 Family of unknown function (DUF695) D11S_1697 PF06877 Regulator of ribonuclease activity B D11S_1698 PF03372 Endonuclease/Exonuclease/phosphatase family D11S_1699 PF02397 Bacterial sugar transferase D11S_1700 PF00535 Glycosyl transferase family 2 D11S_1701 PF00535 Glycosyl transferase family 2 D11S_1702 PF01757 Acyltransferase family D11S_1703 PF01370 NAD dependent epimerase/dehydratase family D11S_1705 PF00005 ABC transporter D11S_1706 PF01061 ABC-2 type transporter D11S_1707 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D11S_1708 PF04321 RmlD substrate binding domain D11S_1709 PF00483 Nucleotidyl transferase D11S_1710 PF16363 GDP-mannose 4,6 dehydratase D11S_1711 PF13406 Transglycosylase SLT domain D11S_1712 PF00535 Glycosyl transferase family 2 D11S_1713 PF00535 Glycosyl transferase family 2 D11S_1715 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) D11S_1717 PF04230 Polysaccharide pyruvyl transferase D11S_1718 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system D11S_1719 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system D11S_1720 PF02698 DUF218 domain D11S_1722 PF01068 ATP dependent DNA ligase domain D11S_1722 PF14743 DNA ligase OB-like domain D11S_1723 PF00580 UvrD/REP helicase N-terminal domain D11S_1723 PF13361 UvrD-like helicase C-terminal domain D11S_1724 PF02447 GntP family permease D11S_1725 PF01202 Shikimate kinase D11S_1727 PF00356 Bacterial regulatory proteins, lacI family D11S_1727 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D11S_1728 PF02634 FdhD/NarQ family D11S_1731 PF01568 Molydopterin dinucleotide binding domain D11S_1731 PF00384 Molybdopterin oxidoreductase D11S_1731 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D11S_1732 PF09163 Formate dehydrogenase N, transmembrane D11S_1732 PF13247 4Fe-4S dicluster domain D11S_1733 PF01292 Prokaryotic cytochrome b561 D11S_1735 PF17788 HypF Kae1-like domain D11S_1735 PF00708 Acylphosphatase D11S_1735 PF01300 Telomere recombination D11S_1735 PF07503 HypF finger D11S_1736 PF12798 4Fe-4S binding domain D11S_1736 PF00037 4Fe-4S binding domain D11S_1737 PF00361 Proton-conducting membrane transporter D11S_1738 PF00361 Proton-conducting membrane transporter D11S_1739 PF00146 NADH dehydrogenase D11S_1740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D11S_1740 PF00361 Proton-conducting membrane transporter D11S_1741 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D11S_1742 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D11S_1742 PF00361 Proton-conducting membrane transporter D11S_1743 PF00374 Nickel-dependent hydrogenase D11S_1743 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit D11S_1743 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit D11S_1744 PF12838 4Fe-4S dicluster domain D11S_1745 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit D11S_1746 PF07450 Formate hydrogenlyase maturation protein HycH D11S_1747 PF01750 Hydrogenase maturation protease D11S_1748 PF00384 Molybdopterin oxidoreductase D11S_1748 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D11S_1748 PF01568 Molydopterin dinucleotide binding domain D11S_1749 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D11S_1749 PF00384 Molybdopterin oxidoreductase D11S_1749 PF01568 Molydopterin dinucleotide binding domain D11S_1750 PF00549 CoA-ligase D11S_1750 PF02629 CoA binding domain D11S_1751 PF08442 ATP-grasp domain D11S_1751 PF00549 CoA-ligase D11S_1753 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D11S_1753 PF00364 Biotin-requiring enzyme D11S_1753 PF02817 e3 binding domain D11S_1754 PF16078 2-oxoglutarate dehydrogenase N-terminus D11S_1754 PF00676 Dehydrogenase E1 component D11S_1754 PF16870 2-oxoglutarate dehydrogenase C-terminal D11S_1754 PF02779 Transketolase, pyrimidine binding domain D11S_1756 PF00753 Metallo-beta-lactamase superfamily D11S_1758 PF03734 L,D-transpeptidase catalytic domain D11S_1759 PF03572 Peptidase family S41 D11S_1759 PF17804 Tail specific protease N-terminal domain D11S_1759 PF11818 C-terminal domain of tail specific protease (DUF3340) D11S_1759 PF00595 PDZ domain D11S_1760 PF17516 ProQ C-terminal domain D11S_1760 PF04352 ProQ/FINO family D11S_1761 PF04403 Paraquat-inducible protein A D11S_1762 PF02470 MlaD protein D11S_1763 PF01546 Peptidase family M20/M25/M40 D11S_1763 PF07687 Peptidase dimerisation domain D11S_1764 PF00005 ABC transporter D11S_1764 PF08402 TOBE domain D11S_1765 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1766 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1767 PF13416 Bacterial extracellular solute-binding protein D11S_1768 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region D11S_1768 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D11S_1770 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D11S_1770 PF02403 Seryl-tRNA synthetase N-terminal domain D11S_1771 PF03605 Anaerobic c4-dicarboxylate membrane transporter D11S_1772 PF00004 ATPase family associated with various cellular activities (AAA) D11S_1772 PF12002 MgsA AAA+ ATPase C terminal D11S_1772 PF16193 AAA C-terminal domain D11S_1773 PF03548 Outer membrane lipoprotein carrier protein LolA D11S_1774 PF13491 4TM region of DNA translocase FtsK/SpoIIIE D11S_1774 PF01580 FtsK/SpoIIIE family D11S_1774 PF09397 Ftsk gamma domain D11S_1774 PF17854 FtsK alpha domain D11S_1775 PF01037 Lrp/AsnC ligand binding domain D11S_1776 PF18073 Rubredoxin metal binding domain D11S_1777 PF01928 CYTH domain D11S_1778 PF01865 Protein of unknown function DUF47 D11S_1779 PF01384 Phosphate transporter family D11S_1780 PF08239 Bacterial SH3 domain D11S_1781 PF01743 Poly A polymerase head domain D11S_1781 PF12627 Probable RNA and SrmB- binding site of polymerase A D11S_1781 PF01966 HD domain D11S_1782 PF03550 Outer membrane lipoprotein LolB D11S_1783 PF08544 GHMP kinases C terminal D11S_1783 PF00288 GHMP kinases N terminal domain D11S_1784 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D11S_1784 PF14572 Phosphoribosyl synthetase-associated domain D11S_1786 PF01070 FMN-dependent dehydrogenase D11S_1787 PF02652 L-lactate permease D11S_1789 PF04363 Protein of unknown function (DUF496) D11S_1791 PF00266 Aminotransferase class-V D11S_1792 PF00155 Aminotransferase class I and II D11S_1793 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D11S_1794 PF00075 RNase H D11S_1795 PF00929 Exonuclease D11S_1799 PF05016 ParE toxin of type II toxin-antitoxin system, parDE D11S_1803 PF02547 Queuosine biosynthesis protein D11S_1804 PF00155 Aminotransferase class I and II D11S_1805 PF01702 Queuine tRNA-ribosyltransferase D11S_1806 PF02699 Preprotein translocase subunit D11S_1807 PF02355 Protein export membrane protein D11S_1807 PF13721 SecD export protein N-terminal TM region D11S_1807 PF07549 SecD/SecF GG Motif D11S_1808 PF07549 SecD/SecF GG Motif D11S_1808 PF02355 Protein export membrane protein D11S_1809 PF00593 TonB dependent receptor D11S_1809 PF07715 TonB-dependent Receptor Plug Domain D11S_1811 PF00465 Iron-containing alcohol dehydrogenase D11S_1811 PF00171 Aldehyde dehydrogenase family D11S_1812 PF02653 Branched-chain amino acid transport system / permease component D11S_1813 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D11S_1813 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D11S_1814 PF05068 Mannitol repressor D11S_1815 PF08125 Mannitol dehydrogenase C-terminal domain D11S_1815 PF01232 Mannitol dehydrogenase Rossmann domain D11S_1816 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D11S_1816 PF02378 Phosphotransferase system, EIIC D11S_1816 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D11S_1818 PF00664 ABC transporter transmembrane region D11S_1818 PF00005 ABC transporter D11S_1818 PF03412 Peptidase C39 family D11S_1819 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) D11S_1819 PF08339 RTX C-terminal domain D11S_1819 PF02382 N-terminal domain in RTX protein D11S_1820 PF02794 RTX toxin acyltransferase family D11S_1821 PF00464 Serine hydroxymethyltransferase D11S_1824 PF02378 Phosphotransferase system, EIIC D11S_1824 PF00367 phosphotransferase system, EIIB D11S_1825 PF08468 Methyltransferase small domain N-terminal D11S_1825 PF05175 Methyltransferase small domain D11S_1826 PF03603 DNA polymerase III psi subunit D11S_1827 PF00583 Acetyltransferase (GNAT) family D11S_1828 PF17946 RecC C-terminal domain D11S_1829 PF17344 Family of unknown function (DUF5374) D11S_1830 PF10833 Protein of unknown function (DUF2572) D11S_1832 PF07963 Prokaryotic N-terminal methylation motif D11S_1836 PF00691 OmpA family D11S_1837 PF04052 TolB amino-terminal domain D11S_1837 PF07676 WD40-like Beta Propeller Repeat D11S_1838 PF06519 TolA C-terminal D11S_1839 PF02472 Biopolymer transport protein ExbD/TolR D11S_1840 PF01618 MotA/TolQ/ExbB proton channel family D11S_1841 PF03061 Thioesterase superfamily D11S_1843 PF02322 Cytochrome bd terminal oxidase subunit II D11S_1844 PF01654 Cytochrome bd terminal oxidase subunit I D11S_1845 PF17274 Family of unknown function (DUF5339) D11S_1846 PF17864 RuvB AAA lid domain D11S_1846 PF05491 RuvB C-terminal winged helix domain D11S_1846 PF05496 Holliday junction DNA helicase RuvB P-loop domain D11S_1847 PF07499 RuvA, C-terminal domain D11S_1847 PF01330 RuvA N terminal domain D11S_1848 PF02075 Crossover junction endodeoxyribonuclease RuvC D11S_1850 PF01709 Transcriptional regulator D11S_1851 PF00293 NUDIX domain D11S_1854 PF00152 tRNA synthetases class II (D, K and N) D11S_1854 PF02938 GAD domain D11S_1854 PF01336 OB-fold nucleic acid binding domain D11S_1855 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D11S_1856 PF13649 Methyltransferase domain D11S_1858 PF12161 HsdM N-terminal domain D11S_1858 PF02384 N-6 DNA Methylase D11S_1863 PF07690 Major Facilitator Superfamily D11S_1864 PF07715 TonB-dependent Receptor Plug Domain D11S_1864 PF00593 TonB dependent receptor D11S_1865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D11S_1866 PF00929 Exonuclease D11S_1867 PF13726 Na+-H+ antiporter family D11S_1867 PF03553 Na+/H+ antiporter family D11S_1869 PF04055 Radical SAM superfamily D11S_1869 PF01938 TRAM domain D11S_1869 PF00919 Uncharacterized protein family UPF0004 D11S_1872 PF02677 Epoxyqueuosine reductase QueH D11S_1873 PF00348 Polyprenyl synthetase D11S_1874 PF00829 Ribosomal prokaryotic L21 protein D11S_1875 PF01016 Ribosomal L27 protein D11S_1876 PF00892 EamA-like transporter family D11S_1877 PF00892 EamA-like transporter family D11S_1878 PF01018 GTP1/OBG D11S_1878 PF01926 50S ribosome-binding GTPase D11S_1880 PF01668 SmpB protein D11S_1884 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1885 PF12911 N-terminal TM domain of oligopeptide transport permease C D11S_1885 PF00528 Binding-protein-dependent transport system inner membrane component D11S_1886 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D11S_1886 PF00005 ABC transporter D11S_1887 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D11S_1887 PF00005 ABC transporter D11S_1888 PF00486 Transcriptional regulatory protein, C terminal D11S_1888 PF00072 Response regulator receiver domain D11S_1889 PF01197 Ribosomal protein L31 D11S_1890 PF03641 Possible lysine decarboxylase D11S_1891 PF11412 Disulphide bond corrector protein DsbC D11S_1891 PF00085 Thioredoxin D11S_1891 PF02683 Cytochrome C biogenesis protein transmembrane region D11S_1893 PF07681 DoxX D11S_1895 PF12111 Polyribonucleotide phosphorylase C terminal D11S_1895 PF10150 Ribonuclease E/G family D11S_1895 PF00575 S1 RNA binding domain D11S_1897 PF01479 S4 domain D11S_1897 PF00849 RNA pseudouridylate synthase D11S_1899 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D11S_1899 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D11S_1900 PF01053 Cys/Met metabolism PLP-dependent enzyme D11S_1903 PF01464 Transglycosylase SLT domain D11S_1904 PF04956 TrbC/VIRB2 family D11S_1908 PF03458 UPF0126 domain D11S_1911 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain D11S_1912 PF01225 Mur ligase family, catalytic domain D11S_1912 PF02875 Mur ligase family, glutamate ligase domain D11S_1912 PF08245 Mur ligase middle domain D11S_1914 PF06725 3D domain D11S_1914 PF03562 MltA specific insert domain D11S_1915 PF00899 ThiF family D11S_1916 PF01297 Zinc-uptake complex component A periplasmic D11S_1917 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) D11S_1918 PF04461 Protein of unknown function (DUF520) D11S_1919 PF18429 Domain of unknown function (DUF5609) D11S_1920 PF10144 Bacterial virulence factor haemolysin D11S_1922 PF01649 Ribosomal protein S20 D11S_1923 PF03023 Lipid II flippase MurJ D11S_1924 PF01687 Riboflavin kinase D11S_1924 PF06574 FAD synthetase D11S_1926 PF06827 Zinc finger found in FPG and IleRS D11S_1926 PF00133 tRNA synthetases class I (I, L, M and V) D11S_1926 PF08264 Anticodon-binding domain of tRNA D11S_1927 PF01252 Signal peptidase (SPase) II D11S_1928 PF02401 LytB protein D11S_1929 PF05697 Bacterial trigger factor protein (TF) D11S_1929 PF05698 Bacterial trigger factor protein (TF) C-terminus D11S_1929 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D11S_1930 PF00589 Phage integrase family D11S_1930 PF02899 Phage integrase, N-terminal SAM-like domain D11S_1931 PF12832 MFS_1 like family D11S_1932 PF14748 Pyrroline-5-carboxylate reductase dimerisation D11S_1932 PF03807 NADP oxidoreductase coenzyme F420-dependent D11S_1933 PF03807 NADP oxidoreductase coenzyme F420-dependent D11S_1933 PF14748 Pyrroline-5-carboxylate reductase dimerisation D11S_1934 PF04381 Putative exonuclease, RdgC D11S_1936 PF04225 Opacity-associated protein A LysM-like domain D11S_1936 PF08525 Opacity-associated protein A N-terminal motif D11S_1937 PF04055 Radical SAM superfamily D11S_1938 PF08207 Elongation factor P (EF-P) KOW-like domain D11S_1938 PF01132 Elongation factor P (EF-P) OB domain D11S_1938 PF09285 Elongation factor P, C-terminal D11S_1940 PF01212 Beta-eliminating lyase D11S_1941 PF03222 Tryptophan/tyrosine permease family D11S_1942 PF08348 YheO-like PAS domain D11S_1942 PF13309 HTH domain D11S_1943 PF10063 Uncharacterized integral membrane protein (DUF2301) D11S_1944 PF00149 Calcineurin-like phosphoesterase D11S_1945 PF01553 Acyltransferase D11S_1946 PF07732 Multicopper oxidase D11S_1947 PF00892 EamA-like transporter family D11S_1948 PF04055 Radical SAM superfamily D11S_1949 PF01228 Glycine radical D11S_1949 PF02901 Pyruvate formate lyase-like D11S_1950 PF01226 Formate/nitrite transporter D11S_1951 PF01230 HIT domain D11S_1953 PF00933 Glycosyl hydrolase family 3 N terminal domain D11S_1956 PF00365 Phosphofructokinase D11S_1957 PF01545 Cation efflux family D11S_1957 PF16916 Dimerisation domain of Zinc Transporter D11S_1959 PF03883 Peroxide stress protein YaaA D11S_1960 PF03167 Uracil DNA glycosylase superfamily D11S_1961 PF01228 Glycine radical D11S_1962 PF00009 Elongation factor Tu GTP binding domain D11S_1962 PF03144 Elongation factor Tu domain 2 D11S_1962 PF00679 Elongation factor G C-terminus D11S_1962 PF06421 GTP-binding protein LepA C-terminus D11S_1963 PF10502 Signal peptidase, peptidase S26 D11S_1964 PF14622 Ribonuclease-III-like D11S_1964 PF00035 Double-stranded RNA binding motif D11S_1965 PF07650 KH domain D11S_1965 PF01926 50S ribosome-binding GTPase D11S_1966 PF12631 MnmE helical domain D11S_1966 PF10396 GTP-binding protein TrmE N-terminus D11S_1966 PF01926 50S ribosome-binding GTPase D11S_1967 PF14849 YidC periplasmic domain D11S_1967 PF02096 60Kd inner membrane protein D11S_1969 PF00825 Ribonuclease P D11S_1970 PF00468 Ribosomal protein L34 D11S_1972 PF00308 Bacterial dnaA protein D11S_1972 PF08299 Bacterial dnaA protein helix-turn-helix D11S_1972 PF11638 DnaA N-terminal domain D11S_1973 PF02767 DNA polymerase III beta subunit, central domain D11S_1973 PF02768 DNA polymerase III beta subunit, C-terminal domain D11S_1973 PF00712 DNA polymerase III beta subunit, N-terminal domain D11S_1974 PF02463 RecF/RecN/SMC N terminal domain D11S_1975 PF13649 Methyltransferase domain D11S_1976 PF00080 Copper/zinc superoxide dismutase (SODC) D11S_1980 PF03949 Malic enzyme, NAD binding domain D11S_1980 PF00390 Malic enzyme, N-terminal domain D11S_1982 PF03918 Cytochrome C biogenesis protein D11S_1983 PF08534 Redoxin D11S_1984 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D11S_1984 PF01578 Cytochrome C assembly protein D11S_1986 PF03916 Polysulphide reductase, NrfD D11S_1987 PF13247 4Fe-4S dicluster domain D11S_1989 PF02335 Cytochrome c552 D11S_1992 PF03918 Cytochrome C biogenesis protein D11S_1993 PF03918 Cytochrome C biogenesis protein D11S_1994 PF08534 Redoxin D11S_1995 PF01578 Cytochrome C assembly protein D11S_1995 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal D11S_1996 PF03100 CcmE D11S_1997 PF04995 Heme exporter protein D (CcmD) D11S_1998 PF01578 Cytochrome C assembly protein D11S_1999 PF03379 CcmB protein D11S_2000 PF00005 ABC transporter D11S_2003 PF01479 S4 domain D11S_2003 PF00849 RNA pseudouridylate synthase D11S_2005 PF00390 Malic enzyme, N-terminal domain D11S_2005 PF01515 Phosphate acetyl/butaryl transferase D11S_2005 PF03949 Malic enzyme, NAD binding domain D11S_2006 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D11S_2006 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D11S_2008 PF04228 Putative neutral zinc metallopeptidase D11S_2009 PF01476 LysM domain D11S_2010 PF02660 Glycerol-3-phosphate acyltransferase D11S_2011 PF02152 Dihydroneopterin aldolase D11S_2012 PF01464 Transglycosylase SLT domain D11S_2012 PF00497 Bacterial extracellular solute-binding proteins, family 3 D11S_2014 PF02600 Disulfide bond formation protein DsbB D11S_2015 PF06450 Bacterial Na+/H+ antiporter B (NhaB) D11S_2016 PF07840 FadR C-terminal domain D11S_2016 PF00392 Bacterial regulatory proteins, gntR family D11S_2017 PF00155 Aminotransferase class I and II D11S_2018 PF00425 chorismate binding enzyme D11S_2019 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D11S_2019 PF16582 Middle domain of thiamine pyrophosphate D11S_2019 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D11S_2020 PF00561 alpha/beta hydrolase fold D11S_2021 PF00312 Ribosomal protein S15 D11S_2022 PF02773 S-adenosylmethionine synthetase, C-terminal domain D11S_2022 PF00438 S-adenosylmethionine synthetase, N-terminal domain D11S_2022 PF02772 S-adenosylmethionine synthetase, central domain D11S_2023 PF10263 SprT-like family D11S_2023 PF17283 SprT-like zinc ribbon domain D11S_2024 PF03222 Tryptophan/tyrosine permease family D11S_2025 PF03315 Serine dehydratase beta chain D11S_2025 PF03313 Serine dehydratase alpha chain D11S_2026 PF00710 Asparaginase, N-terminal D11S_2026 PF17763 Glutaminase/Asparaginase C-terminal domain D11S_2027 PF04055 Radical SAM superfamily D11S_2029 PF13464 Domain of unknown function (DUF4115) D11S_2030 PF04551 GcpE protein D11S_2031 PF13393 Histidyl-tRNA synthetase D11S_2031 PF03129 Anticodon binding domain D11S_2032 PF09976 Tetratricopeptide repeat-like domain D11S_2033 PF04191 Phospholipid methyltransferase D11S_2034 PF00308 Bacterial dnaA protein D11S_2036 PF00860 Permease family D11S_2038 PF13145 PPIC-type PPIASE domain D11S_2039 PF02655 ATP-grasp domain D11S_2039 PF18419 ATP-grasp-like domain D11S_2039 PF04262 Glutamate-cysteine ligase D11S_2041 PF00884 Sulfatase D11S_2042 PF00574 Clp protease D11S_2043 PF10431 C-terminal, D2-small domain, of ClpB protein D11S_2043 PF06689 ClpX C4-type zinc finger D11S_2043 PF07724 AAA domain (Cdc48 subfamily) D11S_2046 PF05675 Protein of unknown function (DUF817) D11S_2047 PF00403 Heavy-metal-associated domain D11S_2048 PF00403 Heavy-metal-associated domain D11S_2049 PF00376 MerR family regulatory protein D11S_2049 PF09278 MerR, DNA binding D11S_2050 PF02384 N-6 DNA Methylase D11S_2051 PF11867 Domain of unknown function (DUF3387) D11S_2051 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D11S_2051 PF18766 SWI2/SNF2 ATPase D11S_2052 PF18389 TrmO C-terminal domain D11S_2052 PF01980 tRNA-methyltransferase O D11S_2053 PF01040 UbiA prenyltransferase family D11S_2054 PF03737 Aldolase/RraA D11S_2057 PF04751 Protein of unknown function (DUF615) D11S_2058 PF01523 Putative modulator of DNA gyrase D11S_2059 PF00156 Phosphoribosyl transferase domain D11S_2060 PF02595 Glycerate kinase family D11S_2061 PF02447 GntP family permease D11S_2062 PF05651 Putative sugar diacid recognition D11S_2062 PF17853 GGDEF-like domain D11S_2062 PF13556 PucR C-terminal helix-turn-helix domain D11S_2064 PF00270 DEAD/DEAH box helicase D11S_2064 PF00271 Helicase conserved C-terminal domain D11S_2064 PF03880 DbpA RNA binding domain D11S_2066 PF03725 3' exoribonuclease family, domain 2 D11S_2066 PF00013 KH domain D11S_2066 PF01138 3' exoribonuclease family, domain 1 D11S_2066 PF00575 S1 RNA binding domain D11S_2066 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D11S_2067 PF04074 YhcH/YjgK/YiaL D11S_2069 PF01510 N-acetylmuramoyl-L-alanine amidase D11S_2070 PF07963 Prokaryotic N-terminal methylation motif D11S_2071 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain D11S_2071 PF00437 Type II/IV secretion system protein D11S_2072 PF00482 Type II secretion system (T2SS), protein F D11S_2074 PF01121 Dephospho-CoA kinase D11S_2075 PF03884 DNA gyrase inhibitor YacG D11S_2077 PF01235 Sodium:alanine symporter family D11S_2078 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D11S_2079 PF17311 Family of unknown function (DUF5358) D11S_2080 PF02954 Bacterial regulatory protein, Fis family D11S_2081 PF01207 Dihydrouridine synthase (Dus) D11S_2083 PF02661 Fic/DOC family D11S_2084 PF00474 Sodium:solute symporter family D11S_2085 PF06196 Protein of unknown function (DUF997) D11S_2089 PF02785 Biotin carboxylase C-terminal domain D11S_2089 PF00289 Biotin carboxylase, N-terminal domain D11S_2089 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D11S_2090 PF00364 Biotin-requiring enzyme D11S_2092 PF01220 Dehydroquinase class II D11S_2093 PF13378 Enolase C-terminal domain-like D11S_2096 PF00378 Enoyl-CoA hydratase/isomerase D11S_2097 PF00121 Triosephosphate isomerase D11S_2099 PF06969 HemN C-terminal domain D11S_2099 PF04055 Radical SAM superfamily D11S_2100 PF10675 Protein of unknown function (DUF2489) D11S_2101 PF04220 Der GTPase activator (YihI) D11S_2102 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D11S_2103 PF00303 Thymidylate synthase D11S_2104 PF01790 Prolipoprotein diacylglyceryl transferase D11S_2105 PF01925 Sulfite exporter TauE/SafE D11S_2106 PF00293 NUDIX domain D11S_2107 PF05025 RbsD / FucU transport protein family D11S_2108 PF00005 ABC transporter D11S_2109 PF02653 Branched-chain amino acid transport system / permease component D11S_2110 PF13407 Periplasmic binding protein domain D11S_2111 PF00294 pfkB family carbohydrate kinase D11S_2112 PF00313 'Cold-shock' DNA-binding domain D11S_2114 PF00749 tRNA synthetases class I (E and Q), catalytic domain D11S_2118 PF04488 Glycosyltransferase sugar-binding region containing DXD motif D11S_2119 PF14698 Argininosuccinate lyase C-terminal D11S_2119 PF00206 Lyase D11S_2120 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D11S_2120 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D11S_2121 PF06628 Catalase-related immune-responsive D11S_2121 PF00199 Catalase D11S_2123 PF07733 Bacterial DNA polymerase III alpha NTPase domain D11S_2123 PF01336 OB-fold nucleic acid binding domain D11S_2123 PF02811 PHP domain D11S_2123 PF14579 Helix-hairpin-helix motif D11S_2123 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D11S_2125 PF00501 AMP-binding enzyme D11S_2127 PF03895 YadA-like membrane anchor domain D11S_2127 PF13018 Extended Signal Peptide of Type V secretion system D11S_2127 PF05662 Coiled stalk of trimeric autotransporter adhesin D11S_2127 PF05658 Head domain of trimeric autotransporter adhesin D11S_2128 PF03477 ATP cone domain D11S_2128 PF13597 Anaerobic ribonucleoside-triphosphate reductase D11S_2132 PF01026 TatD related DNase D11S_2135 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D11S_2136 PF09190 DALR domain D11S_2136 PF01406 tRNA synthetases class I (C) catalytic domain D11S_2137 PF04055 Radical SAM superfamily D11S_2137 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D11S_2138 PF03099 Biotin/lipoate A/B protein ligase family D11S_2139 PF04359 Protein of unknown function (DUF493) D11S_2140 PF07943 Penicillin-binding protein 5, C-terminal domain D11S_2140 PF00768 D-alanyl-D-alanine carboxypeptidase D11S_2141 PF05036 Sporulation related domain D11S_2141 PF03330 Lytic transglycolase D11S_2142 PF01098 Cell cycle protein D11S_2143 PF00905 Penicillin binding protein transpeptidase domain D11S_2143 PF03717 Penicillin-binding Protein dimerisation domain D11S_2144 PF02590 Predicted SPOUT methyltransferase D11S_2146 PF00271 Helicase conserved C-terminal domain D11S_2146 PF00270 DEAD/DEAH box helicase D11S_2147 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D11S_2147 PF07498 Rho termination factor, N-terminal domain D11S_2147 PF07497 Rho termination factor, RNA-binding domain D11S_2148 PF07690 Major Facilitator Superfamily D11S_2150 PF00550 Phosphopantetheine attachment site D11S_2152 PF00698 Acyl transferase domain D11S_2153 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D11S_2153 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D11S_2154 PF02504 Fatty acid synthesis protein D11S_2155 PF01783 Ribosomal L32p protein family D11S_2156 PF02620 Large ribosomal RNA subunit accumulation protein YceD D11S_2158 PF08241 Methyltransferase domain D11S_2179 PF08873 Domain of unknown function (DUF1834) D11S_2180 PF07030 Protein of unknown function (DUF1320) D11S_2182 PF10124 Mu-like prophage major head subunit gpT D11S_2183 PF10123 Mu-like prophage I protein D11S_2184 PF05069 Phage virion morphogenesis family D11S_2185 PF04233 Phage Mu protein F like protein D11S_2186 PF06074 Protein of unknown function (DUF935) D11S_2187 PF03237 Terminase-like family D11S_2188 PF11985 Protein of unknown function (DUF3486) D11S_2189 PF08461 Ribonuclease R winged-helix domain D11S_2190 PF10805 Protein of unknown function (DUF2730) D11S_2194 PF10841 Protein of unknown function (DUF2644) D11S_2195 PF01510 N-acetylmuramoyl-L-alanine amidase D11S_2196 PF08765 Mor transcription activator family D11S_2197 PF06252 Protein of unknown function (DUF1018) D11S_2201 PF17457 Family of unknown function (DUF5420) D11S_2211 PF03406 Phage tail fibre repeat D11S_2230 PF09979 Uncharacterized protein conserved in bacteria (DUF2213) D11S_2231 PF02824 TGS domain D11S_2231 PF13291 ACT domain D11S_2231 PF04607 Region found in RelA / SpoT proteins D11S_2233 PF04233 Phage Mu protein F like protein D11S_2234 PF06381 Protein of unknown function (DUF1073) D11S_2236 PF03592 Terminase small subunit D11S_2239 PF10828 Protein of unknown function (DUF2570) D11S_2240 PF00182 Chitinase class I D11S_2244 PF10548 P22AR C-terminal domain D11S_2244 PF02498 BRO family, N-terminal domain D11S_2248 PF03143 Elongation factor Tu C-terminal domain D11S_2248 PF03144 Elongation factor Tu domain 2 D11S_2248 PF00009 Elongation factor Tu GTP binding domain D11S_2253 PF03354 Phage Terminase D11S_2263 PF02498 BRO family, N-terminal domain D11S_2263 PF10548 P22AR C-terminal domain D11S_2273 PF00589 Phage integrase family D11S_2278 PF01051 Initiator Replication protein D11S_2281 PF04956 TrbC/VIRB2 family D11S_2282 PF03135 CagE, TrbE, VirB family, component of type IV transporter system D11S_2288 PF03524 Conjugal transfer protein D11S_2289 PF03743 Bacterial conjugation TrbI-like protein D11S_2290 PF00437 Type II/IV secretion system protein D11S_2293 PF02534 Type IV secretory system Conjugative DNA transfer D11S_2299 PF02796 Helix-turn-helix domain of resolvase D11S_2299 PF00239 Resolvase, N terminal domain D11S_2301 PF01751 Toprim domain D11S_2301 PF01131 DNA topoisomerase D11S_2304 PF00436 Single-strand binding protein family D11S_2320 PF00436 Single-strand binding protein family D11S_2321 PF00239 Resolvase, N terminal domain D11S_2321 PF02796 Helix-turn-helix domain of resolvase D11S_2342 PF13614 AAA domain D11S_2349 PF02534 Type IV secretory system Conjugative DNA transfer D11S_2350 PF00437 Type II/IV secretion system protein D11S_2351 PF03743 Bacterial conjugation TrbI-like protein D11S_2352 PF03524 Conjugal transfer protein D11S_2358 PF03135 CagE, TrbE, VirB family, component of type IV transporter system