locus-tag class description CF65_00002 PF02768 DNA polymerase III beta subunit, C-terminal domain CF65_00002 PF02767 DNA polymerase III beta subunit, central domain CF65_00002 PF00712 DNA polymerase III beta subunit, N-terminal domain CF65_00003 PF02463 RecF/RecN/SMC N terminal domain CF65_00004 PF13649 Methyltransferase domain CF65_00007 PF00080 Copper/zinc superoxide dismutase (SODC) CF65_00010 PF13276 HTH-like domain CF65_00010 PF00665 Integrase core domain CF65_00010 PF13333 Integrase core domain CF65_00015 PF03949 Malic enzyme, NAD binding domain CF65_00015 PF00390 Malic enzyme, N-terminal domain CF65_00021 PF13361 UvrD-like helicase C-terminal domain CF65_00021 PF00580 UvrD/REP helicase N-terminal domain CF65_00021 PF12462 DNA helicase IV / RNA helicase N terminal CF65_00024 PF01381 Helix-turn-helix CF65_00029 PF01555 DNA methylase CF65_00036 PF00665 Integrase core domain CF65_00039 PF03918 Cytochrome C biogenesis protein CF65_00040 PF08534 Redoxin CF65_00041 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CF65_00041 PF01578 Cytochrome C assembly protein CF65_00043 PF03916 Polysulphide reductase, NrfD CF65_00044 PF13247 4Fe-4S dicluster domain CF65_00047 PF02335 Cytochrome c552 CF65_00050 PF03918 Cytochrome C biogenesis protein CF65_00052 PF03918 Cytochrome C biogenesis protein CF65_00054 PF08534 Redoxin CF65_00055 PF01578 Cytochrome C assembly protein CF65_00055 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal CF65_00056 PF03100 CcmE CF65_00057 PF04995 Heme exporter protein D (CcmD) CF65_00058 PF01578 Cytochrome C assembly protein CF65_00059 PF03379 CcmB protein CF65_00061 PF00005 ABC transporter CF65_00062 PF07690 Major Facilitator Superfamily CF65_00064 PF00849 RNA pseudouridylate synthase CF65_00064 PF01479 S4 domain CF65_00066 PF01515 Phosphate acetyl/butaryl transferase CF65_00066 PF00390 Malic enzyme, N-terminal domain CF65_00066 PF03949 Malic enzyme, NAD binding domain CF65_00068 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CF65_00068 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CF65_00071 PF04228 Putative neutral zinc metallopeptidase CF65_00072 PF01476 LysM domain CF65_00075 PF02660 Glycerol-3-phosphate acyltransferase CF65_00076 PF02152 Dihydroneopterin aldolase CF65_00077 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF65_00077 PF01464 Transglycosylase SLT domain CF65_00079 PF02600 Disulfide bond formation protein DsbB CF65_00080 PF06450 Bacterial Na+/H+ antiporter B (NhaB) CF65_00081 PF07840 FadR C-terminal domain CF65_00081 PF00392 Bacterial regulatory proteins, gntR family CF65_00084 PF00155 Aminotransferase class I and II CF65_00085 PF00425 chorismate binding enzyme CF65_00086 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF65_00086 PF16582 Middle domain of thiamine pyrophosphate CF65_00086 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF65_00087 PF00561 alpha/beta hydrolase fold CF65_00088 PF00312 Ribosomal protein S15 CF65_00089 PF02772 S-adenosylmethionine synthetase, central domain CF65_00089 PF00438 S-adenosylmethionine synthetase, N-terminal domain CF65_00089 PF02773 S-adenosylmethionine synthetase, C-terminal domain CF65_00091 PF17283 SprT-like zinc ribbon domain CF65_00091 PF10263 SprT-like family CF65_00092 PF03222 Tryptophan/tyrosine permease family CF65_00093 PF03315 Serine dehydratase beta chain CF65_00093 PF03313 Serine dehydratase alpha chain CF65_00096 PF00710 Asparaginase, N-terminal CF65_00096 PF17763 Glutaminase/Asparaginase C-terminal domain CF65_00099 PF04055 Radical SAM superfamily CF65_00105 PF13464 Domain of unknown function (DUF4115) CF65_00106 PF04551 GcpE protein CF65_00107 PF13393 Histidyl-tRNA synthetase CF65_00107 PF03129 Anticodon binding domain CF65_00108 PF09976 Tetratricopeptide repeat-like domain CF65_00109 PF04191 Phospholipid methyltransferase CF65_00110 PF00308 Bacterial dnaA protein CF65_00112 PF00860 Permease family CF65_00114 PF13145 PPIC-type PPIASE domain CF65_00115 PF04262 Glutamate-cysteine ligase CF65_00115 PF18419 ATP-grasp-like domain CF65_00115 PF02655 ATP-grasp domain CF65_00116 PF00884 Sulfatase CF65_00119 PF00574 Clp protease CF65_00120 PF06689 ClpX C4-type zinc finger CF65_00120 PF07724 AAA domain (Cdc48 subfamily) CF65_00120 PF10431 C-terminal, D2-small domain, of ClpB protein CF65_00126 PF05675 Protein of unknown function (DUF817) CF65_00128 PF00403 Heavy-metal-associated domain CF65_00131 PF09278 MerR, DNA binding CF65_00131 PF00376 MerR family regulatory protein CF65_00132 PF18389 TrmO C-terminal domain CF65_00132 PF01980 tRNA-methyltransferase O CF65_00134 PF01040 UbiA prenyltransferase family CF65_00135 PF03737 Aldolase/RraA CF65_00136 PF00939 Sodium:sulfate symporter transmembrane region CF65_00137 PF04751 Protein of unknown function (DUF615) CF65_00139 PF01523 Putative modulator of DNA gyrase CF65_00141 PF00156 Phosphoribosyl transferase domain CF65_00142 PF02595 Glycerate kinase family CF65_00143 PF02447 GntP family permease CF65_00144 PF17853 GGDEF-like domain CF65_00144 PF13556 PucR C-terminal helix-turn-helix domain CF65_00144 PF05651 Putative sugar diacid recognition CF65_00145 PF13333 Integrase core domain CF65_00145 PF00665 Integrase core domain CF65_00146 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CF65_00146 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CF65_00148 PF00271 Helicase conserved C-terminal domain CF65_00148 PF00270 DEAD/DEAH box helicase CF65_00148 PF03880 DbpA RNA binding domain CF65_00151 PF00013 KH domain CF65_00151 PF01138 3' exoribonuclease family, domain 1 CF65_00151 PF00575 S1 RNA binding domain CF65_00151 PF03725 3' exoribonuclease family, domain 2 CF65_00151 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CF65_00153 PF04074 YhcH/YjgK/YiaL CF65_00158 PF01510 N-acetylmuramoyl-L-alanine amidase CF65_00160 PF07963 Prokaryotic N-terminal methylation motif CF65_00161 PF00437 Type II/IV secretion system protein CF65_00161 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain CF65_00162 PF00482 Type II secretion system (T2SS), protein F CF65_00164 PF01121 Dephospho-CoA kinase CF65_00165 PF03884 DNA gyrase inhibitor YacG CF65_00167 PF01235 Sodium:alanine symporter family CF65_00168 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CF65_00169 PF17311 Family of unknown function (DUF5358) CF65_00171 PF02954 Bacterial regulatory protein, Fis family CF65_00172 PF01207 Dihydrouridine synthase (Dus) CF65_00175 PF02661 Fic/DOC family CF65_00176 PF00474 Sodium:solute symporter family CF65_00177 PF06196 Protein of unknown function (DUF997) CF65_00182 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CF65_00182 PF02785 Biotin carboxylase C-terminal domain CF65_00182 PF00289 Biotin carboxylase, N-terminal domain CF65_00183 PF00364 Biotin-requiring enzyme CF65_00185 PF01220 Dehydroquinase class II CF65_00186 PF13378 Enolase C-terminal domain-like CF65_00189 PF00378 Enoyl-CoA hydratase/isomerase CF65_00190 PF00121 Triosephosphate isomerase CF65_00194 PF04055 Radical SAM superfamily CF65_00194 PF06969 HemN C-terminal domain CF65_00195 PF10675 Protein of unknown function (DUF2489) CF65_00196 PF04220 Der GTPase activator (YihI) CF65_00198 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CF65_00200 PF00303 Thymidylate synthase CF65_00201 PF01790 Prolipoprotein diacylglyceryl transferase CF65_00202 PF01925 Sulfite exporter TauE/SafE CF65_00204 PF00293 NUDIX domain CF65_00205 PF05025 RbsD / FucU transport protein family CF65_00207 PF00005 ABC transporter CF65_00208 PF02653 Branched-chain amino acid transport system / permease component CF65_00209 PF13407 Periplasmic binding protein domain CF65_00212 PF00294 pfkB family carbohydrate kinase CF65_00213 PF00313 'Cold-shock' DNA-binding domain CF65_00214 PF00749 tRNA synthetases class I (E and Q), catalytic domain CF65_00216 PF04488 Glycosyltransferase sugar-binding region containing DXD motif CF65_00218 PF14698 Argininosuccinate lyase C-terminal CF65_00218 PF00206 Lyase CF65_00221 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CF65_00221 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CF65_00223 PF00199 Catalase CF65_00223 PF06628 Catalase-related immune-responsive CF65_00229 PF02811 PHP domain CF65_00229 PF14579 Helix-hairpin-helix motif CF65_00229 PF01336 OB-fold nucleic acid binding domain CF65_00229 PF07733 Bacterial DNA polymerase III alpha NTPase domain CF65_00229 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CF65_00231 PF00501 AMP-binding enzyme CF65_00234 PF05662 Coiled stalk of trimeric autotransporter adhesin CF65_00234 PF05658 Head domain of trimeric autotransporter adhesin CF65_00234 PF03895 YadA-like membrane anchor domain CF65_00234 PF13018 Extended Signal Peptide of Type V secretion system CF65_00236 PF03477 ATP cone domain CF65_00236 PF13597 Anaerobic ribonucleoside-triphosphate reductase CF65_00244 PF01026 TatD related DNase CF65_00247 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CF65_00249 PF09190 DALR domain CF65_00249 PF01406 tRNA synthetases class I (C) catalytic domain CF65_00250 PF04055 Radical SAM superfamily CF65_00250 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CF65_00251 PF03099 Biotin/lipoate A/B protein ligase family CF65_00252 PF04359 Protein of unknown function (DUF493) CF65_00254 PF00768 D-alanyl-D-alanine carboxypeptidase CF65_00254 PF07943 Penicillin-binding protein 5, C-terminal domain CF65_00256 PF03330 Lytic transglycolase CF65_00256 PF05036 Sporulation related domain CF65_00257 PF01098 Cell cycle protein CF65_00258 PF00905 Penicillin binding protein transpeptidase domain CF65_00258 PF03717 Penicillin-binding Protein dimerisation domain CF65_00259 PF02590 Predicted SPOUT methyltransferase CF65_00263 PF00270 DEAD/DEAH box helicase CF65_00263 PF00271 Helicase conserved C-terminal domain CF65_00265 PF07497 Rho termination factor, RNA-binding domain CF65_00265 PF07498 Rho termination factor, N-terminal domain CF65_00265 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF65_00266 PF07690 Major Facilitator Superfamily CF65_00268 PF00550 Phosphopantetheine attachment site CF65_00270 PF00698 Acyl transferase domain CF65_00272 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CF65_00272 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CF65_00273 PF02504 Fatty acid synthesis protein CF65_00274 PF01783 Ribosomal L32p protein family CF65_00275 PF02620 Large ribosomal RNA subunit accumulation protein YceD CF65_00277 PF08241 Methyltransferase domain CF65_00278 PF04301 Protein of unknown function (DUF452) CF65_00279 PF00155 Aminotransferase class I and II CF65_00280 PF00202 Aminotransferase class-III CF65_00281 PF02666 Phosphatidylserine decarboxylase CF65_00282 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF65_00282 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CF65_00283 PF00696 Amino acid kinase family CF65_00283 PF01472 PUA domain CF65_00286 PF01472 PUA domain CF65_00286 PF00696 Amino acid kinase family CF65_00287 PF00696 Amino acid kinase family CF65_00287 PF01472 PUA domain CF65_00288 PF06738 Putative threonine/serine exporter CF65_00290 PF06738 Putative threonine/serine exporter CF65_00290 PF12821 Threonine/Serine exporter, ThrE CF65_00292 PF00186 Dihydrofolate reductase CF65_00296 PF03471 Transporter associated domain CF65_00296 PF01595 Cyclin M transmembrane N-terminal domain CF65_00296 PF00571 CBS domain CF65_00300 PF07509 Protein of unknown function (DUF1523) CF65_00301 PF01026 TatD related DNase CF65_00302 PF09115 DNA polymerase III, delta subunit, C terminal CF65_00303 PF02223 Thymidylate kinase CF65_00305 PF02618 YceG-like family CF65_00306 PF00543 Nitrogen regulatory protein P-II CF65_00308 PF00455 DeoR C terminal sensor domain CF65_00308 PF08220 DeoR-like helix-turn-helix domain CF65_00309 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF65_00309 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CF65_00310 PF07005 Sugar-binding N-terminal domain CF65_00310 PF17042 Nucleotide-binding C-terminal domain CF65_00311 PF00596 Class II Aldolase and Adducin N-terminal domain CF65_00312 PF01261 Xylose isomerase-like TIM barrel CF65_00317 PF05192 MutS domain III CF65_00317 PF05190 MutS family domain IV CF65_00317 PF05188 MutS domain II CF65_00317 PF00488 MutS domain V CF65_00317 PF01624 MutS domain I CF65_00323 PF04445 Putative SAM-dependent methyltransferase CF65_00324 PF05958 tRNA (Uracil-5-)-methyltransferase CF65_00325 PF04219 Protein of unknown function, DUF CF65_00326 PF01323 DSBA-like thioredoxin domain CF65_00327 PF06288 Protein of unknown function (DUF1040) CF65_00329 PF12804 MobA-like NTP transferase domain CF65_00332 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF65_00332 PF00381 PTS HPr component phosphorylation site CF65_00333 PF00294 pfkB family carbohydrate kinase CF65_00335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF65_00340 PF02525 Flavodoxin-like fold CF65_00344 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CF65_00345 PF02357 Transcription termination factor nusG CF65_00345 PF00467 KOW motif CF65_00347 PF03946 Ribosomal protein L11, N-terminal domain CF65_00347 PF00298 Ribosomal protein L11, RNA binding domain CF65_00348 PF00687 Ribosomal protein L1p/L10e family CF65_00350 PF00466 Ribosomal protein L10 CF65_00355 PF04561 RNA polymerase Rpb2, domain 2 CF65_00355 PF10385 RNA polymerase beta subunit external 1 domain CF65_00355 PF04565 RNA polymerase Rpb2, domain 3 CF65_00355 PF04560 RNA polymerase Rpb2, domain 7 CF65_00355 PF04563 RNA polymerase beta subunit CF65_00355 PF00562 RNA polymerase Rpb2, domain 6 CF65_00356 PF05000 RNA polymerase Rpb1, domain 4 CF65_00356 PF04983 RNA polymerase Rpb1, domain 3 CF65_00356 PF00623 RNA polymerase Rpb1, domain 2 CF65_00356 PF04997 RNA polymerase Rpb1, domain 1 CF65_00356 PF04998 RNA polymerase Rpb1, domain 5 CF65_00357 PF01797 Transposase IS200 like CF65_00358 PF00366 Ribosomal protein S17 CF65_00359 PF00831 Ribosomal L29 protein CF65_00361 PF00252 Ribosomal protein L16p/L10e CF65_00362 PF07650 KH domain CF65_00362 PF00189 Ribosomal protein S3, C-terminal domain CF65_00363 PF00237 Ribosomal protein L22p/L17e CF65_00365 PF00203 Ribosomal protein S19 CF65_00366 PF00181 Ribosomal Proteins L2, RNA binding domain CF65_00366 PF03947 Ribosomal Proteins L2, C-terminal domain CF65_00367 PF00276 Ribosomal protein L23 CF65_00368 PF00573 Ribosomal protein L4/L1 family CF65_00369 PF00297 Ribosomal protein L3 CF65_00370 PF00338 Ribosomal protein S10p/S20e CF65_00371 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_00371 PF03466 LysR substrate binding domain CF65_00372 PF01144 Coenzyme A transferase CF65_00373 PF01144 Coenzyme A transferase CF65_00374 PF02667 Short chain fatty acid transporter CF65_00377 PF00108 Thiolase, N-terminal domain CF65_00377 PF02803 Thiolase, C-terminal domain CF65_00378 PF13404 AsnC-type helix-turn-helix domain CF65_00378 PF01037 Lrp/AsnC ligand binding domain CF65_00379 PF03606 C4-dicarboxylate anaerobic carrier CF65_00380 PF00696 Amino acid kinase family CF65_00381 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CF65_00381 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CF65_00383 PF00654 Voltage gated chloride channel CF65_00384 PF01207 Dihydrouridine synthase (Dus) CF65_00386 PF03590 Aspartate-ammonia ligase CF65_00387 PF01037 Lrp/AsnC ligand binding domain CF65_00387 PF13404 AsnC-type helix-turn-helix domain CF65_00388 PF01048 Phosphorylase superfamily CF65_00390 PF01594 AI-2E family transporter CF65_00391 PF03960 ArsC family CF65_00395 PF17347 Family of unknown function (DUF5377) CF65_00396 PF03889 Alternative ribosome-rescue factor A CF65_00397 PF00919 Uncharacterized protein family UPF0004 CF65_00397 PF18693 TRAM domain CF65_00397 PF04055 Radical SAM superfamily CF65_00398 PF01451 Low molecular weight phosphotyrosine protein phosphatase CF65_00399 PF04325 Protein of unknown function (DUF465) CF65_00401 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF65_00404 PF06877 Regulator of ribonuclease activity B CF65_00406 PF01741 Large-conductance mechanosensitive channel, MscL CF65_00407 PF02254 TrkA-N domain CF65_00407 PF02080 TrkA-C domain CF65_00408 PF01189 16S rRNA methyltransferase RsmB/F CF65_00408 PF01029 NusB family CF65_00409 PF00551 Formyl transferase CF65_00409 PF02911 Formyl transferase, C-terminal domain CF65_00410 PF01327 Polypeptide deformylase CF65_00415 PF09383 NIL domain CF65_00415 PF00005 ABC transporter CF65_00416 PF00528 Binding-protein-dependent transport system inner membrane component CF65_00417 PF03180 NLPA lipoprotein CF65_00420 PF00588 SpoU rRNA Methylase family CF65_00422 PF04393 Protein of unknown function (DUF535) CF65_00423 PF01926 50S ribosome-binding GTPase CF65_00425 PF01078 Magnesium chelatase, subunit ChlI CF65_00425 PF13335 Magnesium chelatase, subunit ChlI C-terminal CF65_00426 PF13335 Magnesium chelatase, subunit ChlI C-terminal CF65_00426 PF01078 Magnesium chelatase, subunit ChlI CF65_00434 PF04717 Type VI secretion system, phage-baseplate injector CF65_00446 PF00665 Integrase core domain CF65_00448 PF13335 Magnesium chelatase, subunit ChlI C-terminal CF65_00448 PF01078 Magnesium chelatase, subunit ChlI CF65_00449 PF04748 Divergent polysaccharide deacetylase CF65_00450 PF01551 Peptidase family M23 CF65_00452 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF65_00452 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF65_00452 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF65_00452 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF65_00453 PF00300 Histidine phosphatase superfamily (branch 1) CF65_00454 PF03887 YfbU domain CF65_00455 PF04333 MlaA lipoprotein CF65_00458 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF65_00460 PF10431 C-terminal, D2-small domain, of ClpB protein CF65_00460 PF00004 ATPase family associated with various cellular activities (AAA) CF65_00460 PF07724 AAA domain (Cdc48 subfamily) CF65_00461 PF00227 Proteasome subunit CF65_00463 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CF65_00468 PF03222 Tryptophan/tyrosine permease family CF65_00469 PF00719 Inorganic pyrophosphatase CF65_00470 PF01435 Peptidase family M48 CF65_00471 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CF65_00473 PF00579 tRNA synthetases class I (W and Y) CF65_00474 PF02881 SRP54-type protein, helical bundle domain CF65_00474 PF00448 SRP54-type protein, GTPase domain CF65_00478 PF03830 PTS system sorbose subfamily IIB component CF65_00478 PF03610 PTS system fructose IIA component CF65_00479 PF03609 PTS system sorbose-specific iic component CF65_00480 PF03613 PTS system mannose/fructose/sorbose family IID component CF65_00486 PF07662 Na+ dependent nucleoside transporter C-terminus CF65_00486 PF01773 Na+ dependent nucleoside transporter N-terminus CF65_00486 PF07670 Nucleoside recognition CF65_00488 PF01048 Phosphorylase superfamily CF65_00491 PF01522 Polysaccharide deacetylase CF65_00491 PF14883 Hypothetical glycosyl hydrolase family 13 CF65_00492 PF00535 Glycosyl transferase family 2 CF65_00497 PF07690 Major Facilitator Superfamily CF65_00499 PF01243 Pyridoxamine 5'-phosphate oxidase CF65_00499 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region CF65_00506 PF00271 Helicase conserved C-terminal domain CF65_00506 PF00270 DEAD/DEAH box helicase CF65_00508 PF05175 Methyltransferase small domain CF65_00511 PF04973 Nicotinamide mononucleotide transporter CF65_00512 PF04973 Nicotinamide mononucleotide transporter CF65_00513 PF00849 RNA pseudouridylate synthase CF65_00516 PF02664 S-Ribosylhomocysteinase (LuxS) CF65_00519 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_00519 PF12464 Maltose acetyltransferase CF65_00521 PF13419 Haloacid dehalogenase-like hydrolase CF65_00523 PF00874 PRD domain CF65_00527 PF00580 UvrD/REP helicase N-terminal domain CF65_00527 PF13361 UvrD-like helicase C-terminal domain CF65_00528 PF07119 Protein of unknown function (DUF1375) CF65_00531 PF01367 5'-3' exonuclease, C-terminal SAM fold CF65_00531 PF01612 3'-5' exonuclease CF65_00531 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CF65_00531 PF00476 DNA polymerase family A CF65_00536 PF00149 Calcineurin-like phosphoesterase CF65_00536 PF02872 5'-nucleotidase, C-terminal domain CF65_00539 PF01370 NAD dependent epimerase/dehydratase family CF65_00543 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF65_00544 PF03738 Glutathionylspermidine synthase preATP-grasp CF65_00544 PF05257 CHAP domain CF65_00545 PF03738 Glutathionylspermidine synthase preATP-grasp CF65_00545 PF05257 CHAP domain CF65_00546 PF03264 NapC/NirT cytochrome c family, N-terminal region CF65_00547 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) CF65_00549 PF12837 4Fe-4S binding domain CF65_00549 PF12801 4Fe-4S binding domain CF65_00550 PF12838 4Fe-4S dicluster domain CF65_00550 PF12800 4Fe-4S binding domain CF65_00552 PF01568 Molydopterin dinucleotide binding domain CF65_00552 PF10518 TAT (twin-arginine translocation) pathway signal sequence CF65_00552 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_00552 PF00384 Molybdopterin oxidoreductase CF65_00553 PF03927 NapD protein CF65_00557 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_00557 PF07730 Histidine kinase CF65_00557 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term CF65_00557 PF00672 HAMP domain CF65_00558 PF01565 FAD binding domain CF65_00558 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CF65_00560 PF04545 Sigma-70, region 4 CF65_00560 PF00140 Sigma-70 factor, region 1.2 CF65_00560 PF04542 Sigma-70 region 2 CF65_00561 PF04994 TfoX C-terminal domain CF65_00561 PF04993 TfoX N-terminal domain CF65_00563 PF03143 Elongation factor Tu C-terminal domain CF65_00563 PF00009 Elongation factor Tu GTP binding domain CF65_00563 PF03144 Elongation factor Tu domain 2 CF65_00564 PF00009 Elongation factor Tu GTP binding domain CF65_00564 PF03144 Elongation factor Tu domain 2 CF65_00564 PF00679 Elongation factor G C-terminus CF65_00564 PF14492 Elongation Factor G, domain II CF65_00564 PF03764 Elongation factor G, domain IV CF65_00565 PF00177 Ribosomal protein S7p/S5e CF65_00566 PF00164 Ribosomal protein S12/S23 CF65_00569 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CF65_00569 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CF65_00573 PF00892 EamA-like transporter family CF65_00575 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CF65_00575 PF08501 Shikimate dehydrogenase substrate binding domain CF65_00575 PF01488 Shikimate / quinate 5-dehydrogenase CF65_00576 PF01300 Telomere recombination CF65_00578 PF01396 Topoisomerase DNA binding C4 zinc finger CF65_00579 PF02646 RmuC family CF65_00580 PF03350 Uncharacterized protein family, UPF0114 CF65_00581 PF00581 Rhodanese-like domain CF65_00582 PF17364 Family of unknown function (DUF5389) CF65_00583 PF01694 Rhomboid family CF65_00585 PF00455 DeoR C terminal sensor domain CF65_00585 PF08220 DeoR-like helix-turn-helix domain CF65_00586 PF00455 DeoR C terminal sensor domain CF65_00586 PF08220 DeoR-like helix-turn-helix domain CF65_00590 PF07715 TonB-dependent Receptor Plug Domain CF65_00590 PF00593 TonB dependent receptor CF65_00591 PF06472 ABC transporter transmembrane region 2 CF65_00591 PF00005 ABC transporter CF65_00592 PF02080 TrkA-C domain CF65_00592 PF06826 Predicted Permease Membrane Region CF65_00596 PF00696 Amino acid kinase family CF65_00600 PF01765 Ribosome recycling factor CF65_00602 PF13288 DXP reductoisomerase C-terminal domain CF65_00602 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CF65_00602 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CF65_00603 PF01255 Putative undecaprenyl diphosphate synthase CF65_00606 PF00595 PDZ domain CF65_00606 PF17820 PDZ domain CF65_00606 PF02163 Peptidase family M50 CF65_00608 PF01103 Surface antigen CF65_00608 PF07244 Surface antigen variable number repeat CF65_00609 PF03938 Outer membrane protein (OmpH-like) CF65_00610 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD CF65_00610 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_00611 PF07977 FabA-like domain CF65_00612 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 CF65_00612 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_00613 PF02684 Lipid-A-disaccharide synthetase CF65_00614 PF01351 Ribonuclease HII CF65_00615 PF03600 Citrate transporter CF65_00615 PF02080 TrkA-C domain CF65_00618 PF00994 Probable molybdopterin binding domain CF65_00628 PF02237 Biotin protein ligase C terminal domain CF65_00628 PF03099 Biotin/lipoate A/B protein ligase family CF65_00629 PF00478 IMP dehydrogenase / GMP reductase domain CF65_00629 PF00571 CBS domain CF65_00632 PF00717 Peptidase S24-like CF65_00634 PF00817 impB/mucB/samB family CF65_00634 PF11798 IMS family HHH motif CF65_00635 PF00809 Pterin binding enzyme CF65_00636 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF65_00636 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF65_00636 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF65_00636 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF65_00637 PF00300 Histidine phosphatase superfamily (branch 1) CF65_00641 PF03775 Septum formation inhibitor MinC, C-terminal domain CF65_00641 PF05209 Septum formation inhibitor MinC, N-terminal domain CF65_00642 PF05166 YcgL domain CF65_00644 PF00877 NlpC/P60 family CF65_00646 PF00793 DAHP synthetase I family CF65_00647 PF13847 Methyltransferase domain CF65_00647 PF17827 PrmC N-terminal domain CF65_00649 PF03462 PCRF domain CF65_00649 PF00472 RF-1 domain CF65_00650 PF05433 Glycine zipper 2TM domain CF65_00651 PF06185 YecM protein CF65_00652 PF00750 tRNA synthetases class I (R) CF65_00652 PF05746 DALR anticodon binding domain CF65_00652 PF03485 Arginyl tRNA synthetase N terminal domain CF65_00654 PF06097 Bacterial protein of unknown function (DUF945) CF65_00657 PF00012 Hsp70 protein CF65_00659 PF00226 DnaJ domain CF65_00659 PF01556 DnaJ C terminal domain CF65_00659 PF00684 DnaJ central domain CF65_00661 PF13609 Gram-negative porin CF65_00662 PF01053 Cys/Met metabolism PLP-dependent enzyme CF65_00663 PF01053 Cys/Met metabolism PLP-dependent enzyme CF65_00664 PF01066 CDP-alcohol phosphatidyltransferase CF65_00668 PF03372 Endonuclease/Exonuclease/phosphatase family CF65_00669 PF03498 Cytolethal distending toxin A/C domain CF65_00672 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CF65_00674 PF02146 Sir2 family CF65_00675 PF13417 Glutathione S-transferase, N-terminal domain CF65_00675 PF04399 Glutaredoxin 2, C terminal domain CF65_00679 PF10150 Ribonuclease E/G family CF65_00679 PF00575 S1 RNA binding domain CF65_00680 PF00474 Sodium:solute symporter family CF65_00682 PF08003 Protein of unknown function (DUF1698) CF65_00684 PF00709 Adenylosuccinate synthetase CF65_00688 PF00226 DnaJ domain CF65_00688 PF01556 DnaJ C terminal domain CF65_00689 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CF65_00689 PF01926 50S ribosome-binding GTPase CF65_00691 PF07690 Major Facilitator Superfamily CF65_00694 PF06559 2'-deoxycytidine 5'-triphosphate deaminase (DCD) CF65_00695 PF00485 Phosphoribulokinase / Uridine kinase family CF65_00699 PF00528 Binding-protein-dependent transport system inner membrane component CF65_00700 PF00005 ABC transporter CF65_00700 PF08402 TOBE domain CF65_00705 PF00459 Inositol monophosphatase family CF65_00706 PF00588 SpoU rRNA Methylase family CF65_00707 PF02082 Transcriptional regulator CF65_00708 PF00266 Aminotransferase class-V CF65_00709 PF01592 NifU-like N terminal domain CF65_00711 PF01521 Iron-sulphur cluster biosynthesis CF65_00712 PF07743 HSCB C-terminal oligomerisation domain CF65_00713 PF00012 Hsp70 protein CF65_00715 PF00111 2Fe-2S iron-sulfur cluster binding domain CF65_00716 PF04384 Iron-sulphur cluster assembly CF65_00717 PF09334 tRNA synthetases class I (M) CF65_00717 PF01588 Putative tRNA binding domain CF65_00718 PF10609 NUBPL iron-transfer P-loop NTPase CF65_00721 PF03173 Putative carbohydrate binding domain CF65_00721 PF02838 Glycosyl hydrolase family 20, domain 2 CF65_00721 PF00728 Glycosyl hydrolase family 20, catalytic domain CF65_00721 PF03174 Chitobiase/beta-hexosaminidase C-terminal domain CF65_00722 PF00334 Nucleoside diphosphate kinase CF65_00723 PF00883 Cytosol aminopeptidase family, catalytic domain CF65_00723 PF12404 Peptidase CF65_00725 PF01176 Translation initiation factor 1A / IF-1 CF65_00726 PF00795 Carbon-nitrogen hydrolase CF65_00729 PF00571 CBS domain CF65_00729 PF03471 Transporter associated domain CF65_00732 PF08218 Citrate lyase ligase C-terminal domain CF65_00734 PF06857 Malonate decarboxylase delta subunit (MdcD) CF65_00735 PF03328 HpcH/HpaI aldolase/citrate lyase family CF65_00737 PF04223 Citrate lyase, alpha subunit (CitF) CF65_00740 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase CF65_00740 PF03802 Apo-citrate lyase phosphoribosyl-dephospho-CoA transferase CF65_00741 PF00939 Sodium:sulfate symporter transmembrane region CF65_00744 PF01263 Aldose 1-epimerase CF65_00745 PF10509 Galactokinase galactose-binding signature CF65_00745 PF08544 GHMP kinases C terminal CF65_00745 PF00288 GHMP kinases N terminal domain CF65_00747 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CF65_00747 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CF65_00749 PF00356 Bacterial regulatory proteins, lacI family CF65_00750 PF13407 Periplasmic binding protein domain CF65_00751 PF00005 ABC transporter CF65_00753 PF02653 Branched-chain amino acid transport system / permease component CF65_00757 PF00072 Response regulator receiver domain CF65_00757 PF01627 Hpt domain CF65_00757 PF00989 PAS fold CF65_00757 PF18415 Histidine kinase receptor ArcB trans-membrane domain CF65_00757 PF00512 His Kinase A (phospho-acceptor) domain CF65_00757 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_00759 PF00109 Beta-ketoacyl synthase, N-terminal domain CF65_00759 PF02801 Beta-ketoacyl synthase, C-terminal domain CF65_00760 PF01266 FAD dependent oxidoreductase CF65_00760 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CF65_00761 PF01266 FAD dependent oxidoreductase CF65_00761 PF05430 S-adenosyl-L-methionine-dependent methyltransferase CF65_00762 PF07715 TonB-dependent Receptor Plug Domain CF65_00762 PF04886 PT repeat CF65_00762 PF00593 TonB dependent receptor CF65_00763 PF04886 PT repeat CF65_00763 PF00593 TonB dependent receptor CF65_00763 PF07715 TonB-dependent Receptor Plug Domain CF65_00764 PF04886 PT repeat CF65_00764 PF07715 TonB-dependent Receptor Plug Domain CF65_00764 PF00593 TonB dependent receptor CF65_00766 PF01025 GrpE CF65_00768 PF01513 ATP-NAD kinase CF65_00769 PF02463 RecF/RecN/SMC N terminal domain CF65_00770 PF03922 OmpW family CF65_00774 PF04279 Intracellular septation protein A CF65_00775 PF03061 Thioesterase superfamily CF65_00776 PF03795 YCII-related domain CF65_00777 PF01464 Transglycosylase SLT domain CF65_00777 PF14718 Soluble lytic murein transglycosylase L domain CF65_00778 PF01371 Trp repressor protein CF65_00780 PF00912 Transglycosylase CF65_00785 PF13356 Arm DNA-binding domain CF65_00785 PF00589 Phage integrase family CF65_00786 PF03840 Preprotein translocase SecG subunit CF65_00789 PF01751 Toprim domain CF65_00789 PF01131 DNA topoisomerase CF65_00790 PF02132 RecR protein CF65_00790 PF13662 Toprim domain CF65_00792 PF02575 YbaB/EbfC DNA-binding family CF65_00794 PF00149 Calcineurin-like phosphoesterase CF65_00795 PF01497 Periplasmic binding protein CF65_00796 PF01032 FecCD transport family CF65_00798 PF01032 FecCD transport family CF65_00799 PF00005 ABC transporter CF65_00801 PF00152 tRNA synthetases class II (D, K and N) CF65_00804 PF02910 Fumarate reductase flavoprotein C-term CF65_00804 PF00890 FAD binding domain CF65_00805 PF13183 4Fe-4S dicluster domain CF65_00805 PF13085 2Fe-2S iron-sulfur cluster binding domain CF65_00806 PF02300 Fumarate reductase subunit C CF65_00807 PF02313 Fumarate reductase subunit D CF65_00809 PF01170 Putative RNA methylase family UPF0020 CF65_00809 PF02926 THUMP domain CF65_00809 PF10672 S-adenosylmethionine-dependent methyltransferase CF65_00810 PF08240 Alcohol dehydrogenase GroES-like domain CF65_00810 PF00107 Zinc-binding dehydrogenase CF65_00811 PF13173 AAA domain CF65_00811 PF13635 Domain of unknown function (DUF4143) CF65_00812 PF06508 Queuosine biosynthesis protein QueC CF65_00816 PF00149 Calcineurin-like phosphoesterase CF65_00817 PF00293 NUDIX domain CF65_00819 PF02557 D-alanyl-D-alanine carboxypeptidase CF65_00820 PF01546 Peptidase family M20/M25/M40 CF65_00820 PF07687 Peptidase dimerisation domain CF65_00822 PF03960 ArsC family CF65_00823 PF00183 Hsp90 protein CF65_00823 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_00825 PF01817 Chorismate mutase type II CF65_00825 PF00800 Prephenate dehydratase CF65_00826 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase CF65_00827 PF00091 Tubulin/FtsZ family, GTPase domain CF65_00827 PF12327 FtsZ family, C-terminal domain CF65_00830 PF02491 SHS2 domain inserted in FTSA CF65_00831 PF08478 POTRA domain, FtsQ-type CF65_00831 PF03799 Cell division protein FtsQ CF65_00832 PF01820 D-ala D-ala ligase N-terminus CF65_00832 PF07478 D-ala D-ala ligase C-terminus CF65_00833 PF01225 Mur ligase family, catalytic domain CF65_00833 PF02875 Mur ligase family, glutamate ligase domain CF65_00833 PF08245 Mur ligase middle domain CF65_00835 PF04101 Glycosyltransferase family 28 C-terminal domain CF65_00835 PF03033 Glycosyltransferase family 28 N-terminal domain CF65_00837 PF01098 Cell cycle protein CF65_00838 PF08245 Mur ligase middle domain CF65_00838 PF02875 Mur ligase family, glutamate ligase domain CF65_00839 PF00953 Glycosyl transferase family 4 CF65_00839 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CF65_00840 PF01225 Mur ligase family, catalytic domain CF65_00840 PF02875 Mur ligase family, glutamate ligase domain CF65_00840 PF08245 Mur ligase middle domain CF65_00841 PF08245 Mur ligase middle domain CF65_00841 PF02875 Mur ligase family, glutamate ligase domain CF65_00841 PF01225 Mur ligase family, catalytic domain CF65_00844 PF03717 Penicillin-binding Protein dimerisation domain CF65_00844 PF00905 Penicillin binding protein transpeptidase domain CF65_00846 PF04999 Cell division protein FtsL CF65_00847 PF01795 MraW methylase family CF65_00849 PF02381 MraZ protein, putative antitoxin-like CF65_00851 PF02554 Carbon starvation protein CstA CF65_00854 PF00528 Binding-protein-dependent transport system inner membrane component CF65_00855 PF00528 Binding-protein-dependent transport system inner membrane component CF65_00856 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF65_00858 PF00005 ABC transporter CF65_00860 PF13580 SIS domain CF65_00861 PF00270 DEAD/DEAH box helicase CF65_00861 PF02559 CarD-like/TRCF domain CF65_00861 PF03461 TRCF domain CF65_00861 PF17757 UvrB interaction domain CF65_00861 PF00271 Helicase conserved C-terminal domain CF65_00863 PF17176 tRNA-binding domain CF65_00863 PF05127 Helicase CF65_00863 PF13718 GNAT acetyltransferase 2 CF65_00865 PF02130 Uncharacterized protein family UPF0054 CF65_00871 PF04972 BON domain CF65_00871 PF00263 Bacterial type II and III secretion system protein CF65_00871 PF13629 Pilus formation protein N terminal region CF65_00874 PF00437 Type II/IV secretion system protein CF65_00884 PF00209 Sodium:neurotransmitter symporter family CF65_00885 PF00849 RNA pseudouridylate synthase CF65_00892 PF03144 Elongation factor Tu domain 2 CF65_00892 PF09106 Elongation factor SelB, winged helix CF65_00892 PF09107 Elongation factor SelB, winged helix CF65_00892 PF00009 Elongation factor Tu GTP binding domain CF65_00894 PF12390 Selenocysteine synthase N terminal CF65_00894 PF03841 L-seryl-tRNA selenium transferase CF65_00896 PF03129 Anticodon binding domain CF65_00896 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF65_00896 PF04073 Aminoacyl-tRNA editing domain CF65_00899 PF00893 Small Multidrug Resistance protein CF65_00900 PF03937 Flavinator of succinate dehydrogenase CF65_00902 PF08281 Sigma-70, region 4 CF65_00902 PF04542 Sigma-70 region 2 CF65_00904 PF03873 Anti sigma-E protein RseA, C-terminal domain CF65_00904 PF03872 Anti sigma-E protein RseA, N-terminal domain CF65_00906 PF17188 MucB/RseB C-terminal domain CF65_00906 PF03888 MucB/RseB N-terminal domain CF65_00909 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CF65_00912 PF00106 short chain dehydrogenase CF65_00914 PF07687 Peptidase dimerisation domain CF65_00914 PF01546 Peptidase family M20/M25/M40 CF65_00915 PF00156 Phosphoribosyl transferase domain CF65_00919 PF03968 OstA-like protein CF65_00919 PF04453 LPS transport system D CF65_00920 PF03352 Methyladenine glycosylase CF65_00921 PF07274 Protein of unknown function (DUF1440) CF65_00923 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CF65_00923 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CF65_00926 PF01491 Frataxin-like domain CF65_00927 PF00570 HRDC domain CF65_00927 PF16124 RecQ zinc-binding CF65_00927 PF09382 RQC domain CF65_00927 PF00271 Helicase conserved C-terminal domain CF65_00927 PF00270 DEAD/DEAH box helicase CF65_00929 PF01751 Toprim domain CF65_00929 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_00929 PF18053 DNA gyrase B subunit insert domain CF65_00929 PF00986 DNA gyrase B subunit, carboxyl terminus CF65_00929 PF00204 DNA gyrase B CF65_00930 PF00485 Phosphoribulokinase / Uridine kinase family CF65_00931 PF03143 Elongation factor Tu C-terminal domain CF65_00931 PF03144 Elongation factor Tu domain 2 CF65_00931 PF00009 Elongation factor Tu GTP binding domain CF65_00932 PF13407 Periplasmic binding protein domain CF65_00933 PF00005 ABC transporter CF65_00934 PF00005 ABC transporter CF65_00935 PF02653 Branched-chain amino acid transport system / permease component CF65_00936 PF02653 Branched-chain amino acid transport system / permease component CF65_00937 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF65_00937 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF65_00938 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF65_00938 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF65_00939 PF17674 HHH domain CF65_00939 PF16921 Tex protein YqgF-like domain CF65_00939 PF09371 Tex-like protein N-terminal domain CF65_00939 PF00575 S1 RNA binding domain CF65_00940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_00940 PF03466 LysR substrate binding domain CF65_00941 PF00939 Sodium:sulfate symporter transmembrane region CF65_00942 PF00300 Histidine phosphatase superfamily (branch 1) CF65_00943 PF16921 Tex protein YqgF-like domain CF65_00943 PF09371 Tex-like protein N-terminal domain CF65_00943 PF00575 S1 RNA binding domain CF65_00943 PF17674 HHH domain CF65_00944 PF01272 Transcription elongation factor, GreA/GreB, C-term CF65_00944 PF03449 Transcription elongation factor, N-terminal CF65_00948 PF08281 Sigma-70, region 4 CF65_00948 PF04542 Sigma-70 region 2 CF65_00950 PF02592 Putative vitamin uptake transporter CF65_00952 PF07219 HemY protein N-terminus CF65_00953 PF04375 HemX, putative uroporphyrinogen-III C-methyltransferase CF65_00954 PF02602 Uroporphyrinogen-III synthase HemD CF65_00957 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CF65_00957 PF03900 Porphobilinogen deaminase, C-terminal domain CF65_00958 PF01295 Adenylate cyclase, class-I CF65_00958 PF12633 Adenylate cyclase NT domain CF65_00959 PF00196 Bacterial regulatory proteins, luxR family CF65_00959 PF00072 Response regulator receiver domain CF65_00960 PF17243 POTRA domain TamA domain 1 CF65_00960 PF01103 Surface antigen CF65_00961 PF04357 TamB, inner membrane protein subunit of TAM complex CF65_00962 PF02541 Ppx/GppA phosphatase family CF65_00964 PF01293 Phosphoenolpyruvate carboxykinase CF65_00969 PF00293 NUDIX domain CF65_00969 PF09297 NADH pyrophosphatase zinc ribbon domain CF65_00970 PF01208 Uroporphyrinogen decarboxylase (URO-D) CF65_00971 PF04222 Protein of unknown function (DUF416) CF65_00972 PF00216 Bacterial DNA-binding protein CF65_00973 PF00455 DeoR C terminal sensor domain CF65_00973 PF08220 DeoR-like helix-turn-helix domain CF65_00974 PF01380 SIS domain CF65_00976 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CF65_00977 PF03466 LysR substrate binding domain CF65_00977 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_00981 PF00135 Carboxylesterase family CF65_00982 PF00248 Aldo/keto reductase family CF65_00983 PF00248 Aldo/keto reductase family CF65_00985 PF03466 LysR substrate binding domain CF65_00985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_00988 PF05872 Bacterial protein of unknown function (DUF853) CF65_00990 PF03473 MOSC domain CF65_00991 PF02810 SEC-C motif CF65_00992 PF03631 Virulence factor BrkB CF65_00993 PF02580 D-Tyr-tRNA(Tyr) deacylase CF65_00994 PF03616 Sodium/glutamate symporter CF65_00995 PF00512 His Kinase A (phospho-acceptor) domain CF65_00995 PF16527 Two-component sensor protein CpxA, periplasmic domain CF65_00995 PF00672 HAMP domain CF65_00995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_00997 PF00072 Response regulator receiver domain CF65_00997 PF00486 Transcriptional regulatory protein, C terminal CF65_00998 PF04355 SmpA / OmlA family CF65_01001 PF04245 37-kD nucleoid-associated bacterial protein CF65_01003 PF07208 Protein of unknown function (DUF1414) CF65_01005 PF00884 Sulfatase CF65_01005 PF11893 Domain of unknown function (DUF3413) CF65_01008 PF03819 MazG nucleotide pyrophosphohydrolase domain CF65_01009 PF00582 Universal stress protein family CF65_01011 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CF65_01011 PF01411 tRNA synthetases class II (A) CF65_01011 PF02272 DHHA1 domain CF65_01012 PF02599 Global regulator protein family CF65_01013 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CF65_01013 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CF65_01013 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CF65_01013 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CF65_01014 PF00483 Nucleotidyl transferase CF65_01015 PF01340 Met Apo-repressor, MetJ CF65_01017 PF04452 RNA methyltransferase CF65_01018 PF02622 Uncharacterized ACR, COG1678 CF65_01019 PF03652 Holliday junction resolvase CF65_01020 PF03952 Enolase, N-terminal domain CF65_01020 PF00113 Enolase, C-terminal TIM barrel domain CF65_01023 PF04400 (Na+)-NQR maturation NqrM CF65_01024 PF02424 ApbE family CF65_01027 PF00175 Oxidoreductase NAD-binding domain CF65_01027 PF00111 2Fe-2S iron-sulfur cluster binding domain CF65_01027 PF00970 Oxidoreductase FAD-binding domain CF65_01028 PF02508 Rnf-Nqr subunit, membrane protein CF65_01029 PF02508 Rnf-Nqr subunit, membrane protein CF65_01031 PF04205 FMN-binding domain CF65_01032 PF03116 NQR2, RnfD, RnfE family CF65_01033 PF05896 Na(+)-translocating NADH-quinone reductase subunit A (NQRA) CF65_01033 PF11973 NQRA C-terminal domain CF65_01039 PF01722 BolA-like protein CF65_01040 PF03923 Uncharacterized lipoprotein CF65_01042 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain CF65_01042 PF01464 Transglycosylase SLT domain CF65_01043 PF04362 Bacterial Fe(2+) trafficking CF65_01044 PF00730 HhH-GPD superfamily base excision DNA repair protein CF65_01044 PF14815 NUDIX domain CF65_01045 PF02390 Putative methyltransferase CF65_01046 PF04320 Protein with unknown function (DUF469) CF65_01048 PF01547 Bacterial extracellular solute-binding protein CF65_01050 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01051 PF00005 ABC transporter CF65_01053 PF01207 Dihydrouridine synthase (Dus) CF65_01054 PF01207 Dihydrouridine synthase (Dus) CF65_01056 PF01207 Dihydrouridine synthase (Dus) CF65_01057 PF05099 Tellurite resistance protein TerB CF65_01057 PF00226 DnaJ domain CF65_01059 PF00156 Phosphoribosyl transferase domain CF65_01062 PF03725 3' exoribonuclease family, domain 2 CF65_01062 PF01138 3' exoribonuclease family, domain 1 CF65_01063 PF08340 Domain of unknown function (DUF1732) CF65_01063 PF03755 YicC-like family, N-terminal region CF65_01064 PF01571 Aminomethyltransferase folate-binding domain CF65_01067 PF00318 Ribosomal protein S2 CF65_01069 PF00889 Elongation factor TS CF65_01070 PF02565 Recombination protein O C terminal CF65_01070 PF11967 Recombination protein O N terminal CF65_01071 PF01938 TRAM domain CF65_01071 PF05958 tRNA (Uracil-5-)-methyltransferase CF65_01072 PF13291 ACT domain CF65_01072 PF04607 Region found in RelA / SpoT proteins CF65_01072 PF02824 TGS domain CF65_01074 PF01219 Prokaryotic diacylglycerol kinase CF65_01077 PF13276 HTH-like domain CF65_01077 PF13333 Integrase core domain CF65_01077 PF00665 Integrase core domain CF65_01078 PF13411 MerR HTH family regulatory protein CF65_01079 PF05258 Dna[CI] antecedent, DciA CF65_01083 PF07517 SecA DEAD-like domain CF65_01083 PF02810 SEC-C motif CF65_01083 PF01043 SecA preprotein cross-linking domain CF65_01083 PF07516 SecA Wing and Scaffold domain CF65_01085 PF00293 NUDIX domain CF65_01087 PF14840 Processivity clamp loader gamma complex DNA pol III C-term CF65_01087 PF06144 DNA polymerase III, delta subunit CF65_01088 PF04390 Lipopolysaccharide-assembly CF65_01090 PF08264 Anticodon-binding domain of tRNA CF65_01090 PF13603 Leucyl-tRNA synthetase, Domain 2 CF65_01090 PF00133 tRNA synthetases class I (I, L, M and V) CF65_01095 PF10786 Glucose-6-phosphate 1-dehydrogenase (EC 1.1.1.49) CF65_01096 PF01909 Nucleotidyltransferase domain CF65_01097 PF08780 Nucleotidyltransferase substrate binding protein like CF65_01098 PF00149 Calcineurin-like phosphoesterase CF65_01099 PF00398 Ribosomal RNA adenine dimethylase CF65_01101 PF00639 PPIC-type PPIASE domain CF65_01101 PF09312 SurA N-terminal domain CF65_01102 PF00156 Phosphoribosyl transferase domain CF65_01106 PF04356 Protein of unknown function (DUF489) CF65_01107 PF00206 Lyase CF65_01107 PF08328 Adenylosuccinate lyase C-terminal CF65_01109 PF00106 short chain dehydrogenase CF65_01111 PF13411 MerR HTH family regulatory protein CF65_01113 PF13411 MerR HTH family regulatory protein CF65_01114 PF08240 Alcohol dehydrogenase GroES-like domain CF65_01114 PF00107 Zinc-binding dehydrogenase CF65_01115 PF00756 Putative esterase CF65_01117 PF00448 SRP54-type protein, GTPase domain CF65_01117 PF02978 Signal peptide binding domain CF65_01117 PF02881 SRP54-type protein, helical bundle domain CF65_01120 PF01578 Cytochrome C assembly protein CF65_01123 PF00571 CBS domain CF65_01123 PF01595 Cyclin M transmembrane N-terminal domain CF65_01123 PF03471 Transporter associated domain CF65_01124 PF01618 MotA/TolQ/ExbB proton channel family CF65_01127 PF03544 Gram-negative bacterial TonB protein C-terminal CF65_01132 PF17841 BID domain of Bartonella effector protein (Bep) CF65_01132 PF02661 Fic/DOC family CF65_01133 PF02661 Fic/DOC family CF65_01133 PF17841 BID domain of Bartonella effector protein (Bep) CF65_01137 PF00384 Molybdopterin oxidoreductase CF65_01137 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_01137 PF01568 Molydopterin dinucleotide binding domain CF65_01138 PF13247 4Fe-4S dicluster domain CF65_01138 PF12800 4Fe-4S binding domain CF65_01140 PF04976 DMSO reductase anchor subunit (DmsC) CF65_01141 PF02613 Nitrate reductase delta subunit CF65_01145 PF02091 Glycyl-tRNA synthetase alpha subunit CF65_01149 PF02092 Glycyl-tRNA synthetase beta subunit CF65_01149 PF05746 DALR anticodon binding domain CF65_01151 PF00490 Delta-aminolevulinic acid dehydratase CF65_01152 PF00902 Sec-independent protein translocase protein (TatC) CF65_01154 PF02416 mttA/Hcf106 family CF65_01156 PF01430 Hsp33 protein CF65_01158 PF01479 S4 domain CF65_01159 PF13419 Haloacid dehalogenase-like hydrolase CF65_01160 PF00293 NUDIX domain CF65_01161 PF12833 Helix-turn-helix domain CF65_01161 PF02311 AraC-like ligand binding domain CF65_01162 PF04224 Protein of unknown function, DUF417 CF65_01164 PF03169 OPT oligopeptide transporter protein CF65_01166 PF00459 Inositol monophosphatase family CF65_01167 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CF65_01167 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CF65_01168 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CF65_01171 PF01177 Asp/Glu/Hydantoin racemase CF65_01175 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CF65_01175 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CF65_01177 PF00109 Beta-ketoacyl synthase, N-terminal domain CF65_01177 PF02801 Beta-ketoacyl synthase, C-terminal domain CF65_01182 PF00109 Beta-ketoacyl synthase, N-terminal domain CF65_01182 PF02801 Beta-ketoacyl synthase, C-terminal domain CF65_01195 PF00550 Phosphopantetheine attachment site CF65_01201 PF13419 Haloacid dehalogenase-like hydrolase CF65_01202 PF02899 Phage integrase, N-terminal SAM-like domain CF65_01202 PF00589 Phage integrase family CF65_01203 PF01678 Diaminopimelate epimerase CF65_01206 PF00586 AIR synthase related protein, N-terminal domain CF65_01206 PF02769 AIR synthase related protein, C-terminal domain CF65_01209 PF16747 Surface-adhesin protein E CF65_01211 PF10431 C-terminal, D2-small domain, of ClpB protein CF65_01211 PF07724 AAA domain (Cdc48 subfamily) CF65_01211 PF02861 Clp amino terminal domain, pathogenicity island component CF65_01211 PF00004 ATPase family associated with various cellular activities (AAA) CF65_01211 PF17871 AAA lid domain CF65_01213 PF10531 SLBB domain CF65_01215 PF02774 Semialdehyde dehydrogenase, dimerisation domain CF65_01215 PF01118 Semialdehyde dehydrogenase, NAD binding domain CF65_01220 PF00156 Phosphoribosyl transferase domain CF65_01221 PF01106 NifU-like domain CF65_01221 PF01521 Iron-sulphur cluster biosynthesis CF65_01222 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CF65_01222 PF01502 Phosphoribosyl-AMP cyclohydrolase CF65_01223 PF05525 Branched-chain amino acid transport protein CF65_01224 PF06418 CTP synthase N-terminus CF65_01224 PF00117 Glutamine amidotransferase class-I CF65_01226 PF01797 Transposase IS200 like CF65_01228 PF00238 Ribosomal protein L14p/L23e CF65_01229 PF00467 KOW motif CF65_01229 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CF65_01230 PF00673 ribosomal L5P family C-terminus CF65_01230 PF00281 Ribosomal protein L5 CF65_01231 PF00253 Ribosomal protein S14p/S29e CF65_01232 PF00410 Ribosomal protein S8 CF65_01233 PF00347 Ribosomal protein L6 CF65_01234 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CF65_01235 PF03719 Ribosomal protein S5, C-terminal domain CF65_01235 PF00333 Ribosomal protein S5, N-terminal domain CF65_01236 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CF65_01237 PF00344 SecY translocase CF65_01238 PF00444 Ribosomal protein L36 CF65_01239 PF00416 Ribosomal protein S13/S18 CF65_01240 PF00411 Ribosomal protein S11 CF65_01241 PF00163 Ribosomal protein S4/S9 N-terminal domain CF65_01241 PF01479 S4 domain CF65_01242 PF01000 RNA polymerase Rpb3/RpoA insert domain CF65_01242 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CF65_01242 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CF65_01243 PF01196 Ribosomal protein L17 CF65_01244 PF01797 Transposase IS200 like CF65_01245 PF03222 Tryptophan/tyrosine permease family CF65_01249 PF00149 Calcineurin-like phosphoesterase CF65_01250 PF13521 AAA domain CF65_01250 PF01467 Cytidylyltransferase-like CF65_01252 PF01206 Sulfurtransferase TusA CF65_01254 PF01205 Uncharacterized protein family UPF0029 CF65_01254 PF09186 Domain of unknown function (DUF1949) CF65_01258 PF02386 Cation transport protein CF65_01259 PF12724 Flavodoxin domain CF65_01264 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CF65_01265 PF09695 Bacterial protein of unknown function (YtfJ_HI0045) CF65_01268 PF13333 Integrase core domain CF65_01268 PF00665 Integrase core domain CF65_01268 PF13276 HTH-like domain CF65_01276 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF65_01277 PF00206 Lyase CF65_01277 PF10415 Fumarase C C-terminus CF65_01280 PF00166 Chaperonin 10 Kd subunit CF65_01284 PF00118 TCP-1/cpn60 chaperonin family CF65_01286 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CF65_01286 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CF65_01287 PF13333 Integrase core domain CF65_01287 PF00665 Integrase core domain CF65_01287 PF13276 HTH-like domain CF65_01291 PF17755 UvrA DNA-binding domain CF65_01291 PF17760 UvrA interaction domain CF65_01292 PF00436 Single-strand binding protein family CF65_01294 PF02086 D12 class N6 adenine-specific DNA methyltransferase CF65_01295 PF01761 3-dehydroquinate synthase CF65_01296 PF01202 Shikimate kinase CF65_01297 PF00263 Bacterial type II and III secretion system protein CF65_01297 PF03958 Bacterial type II/III secretion system short domain CF65_01303 PF11104 Type IV pilus assembly protein PilM; CF65_01304 PF00912 Transglycosylase CF65_01304 PF17092 Penicillin-binding protein OB-like domain CF65_01304 PF00905 Penicillin binding protein transpeptidase domain CF65_01305 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ CF65_01306 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF65_01306 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF65_01308 PF00027 Cyclic nucleotide-binding domain CF65_01308 PF13545 Crp-like helix-turn-helix domain CF65_01310 PF06794 Uncharacterised protein family (UPF0270) CF65_01311 PF00440 Bacterial regulatory proteins, tetR family CF65_01313 PF00692 dUTPase CF65_01315 PF02441 Flavoprotein CF65_01315 PF04127 DNA / pantothenate metabolism flavoprotein CF65_01317 PF04002 RadC-like JAB domain CF65_01319 PF01381 Helix-turn-helix CF65_01319 PF00717 Peptidase S24-like CF65_01321 PF04002 RadC-like JAB domain CF65_01323 PF00830 Ribosomal L28 family CF65_01324 PF00471 Ribosomal protein L33 CF65_01325 PF06827 Zinc finger found in FPG and IleRS CF65_01325 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CF65_01325 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CF65_01330 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CF65_01331 PF01197 Ribosomal protein L31 CF65_01332 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CF65_01334 PF09612 Bacterial protein of unknown function (HtrL_YibB) CF65_01335 PF00270 DEAD/DEAH box helicase CF65_01335 PF17764 3′ DNA-binding domain (3′BD) CF65_01335 PF00271 Helicase conserved C-terminal domain CF65_01335 PF18074 Primosomal protein N C-terminal domain CF65_01335 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CF65_01337 PF05036 Sporulation related domain CF65_01339 PF00440 Bacterial regulatory proteins, tetR family CF65_01340 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF65_01341 PF00873 AcrB/AcrD/AcrF family CF65_01342 PF13649 Methyltransferase domain CF65_01344 PF01544 CorA-like Mg2+ transporter protein CF65_01345 PF02325 YGGT family CF65_01347 PF02594 Uncharacterised ACR, YggU family COG1872 CF65_01349 PF00881 Nitroreductase family CF65_01351 PF00884 Sulfatase CF65_01355 PF01479 S4 domain CF65_01355 PF00849 RNA pseudouridylate synthase CF65_01356 PF13525 Outer membrane lipoprotein CF65_01357 PF01812 5-formyltetrahydrofolate cyclo-ligase family CF65_01358 PF05164 Cell division protein ZapA CF65_01359 PF03695 Uncharacterised protein family (UPF0149) CF65_01360 PF05195 Aminopeptidase P, N-terminal domain CF65_01360 PF00557 Metallopeptidase family M24 CF65_01365 PF00886 Ribosomal protein S16 CF65_01366 PF05239 PRC-barrel domain CF65_01366 PF01782 RimM N-terminal domain CF65_01367 PF01746 tRNA (Guanine-1)-methyltransferase CF65_01368 PF01245 Ribosomal protein L19 CF65_01369 PF04093 rod shape-determining protein MreD CF65_01370 PF04085 rod shape-determining protein MreC CF65_01372 PF08206 Ribonuclease B OB domain CF65_01372 PF00575 S1 RNA binding domain CF65_01372 PF17876 Cold shock domain CF65_01372 PF08461 Ribonuclease R winged-helix domain CF65_01372 PF00773 RNB domain CF65_01374 PF08032 RNA 2'-O ribose methyltransferase substrate binding CF65_01374 PF00588 SpoU rRNA Methylase family CF65_01378 PF07690 Major Facilitator Superfamily CF65_01379 PF03009 Glycerophosphoryl diester phosphodiesterase family CF65_01383 PF02481 DNA recombination-mediator protein A CF65_01383 PF17782 DprA winged helix domain CF65_01385 PF01281 Ribosomal protein L9, N-terminal domain CF65_01385 PF03948 Ribosomal protein L9, C-terminal domain CF65_01386 PF01084 Ribosomal protein S18 CF65_01387 PF00436 Single-strand binding protein family CF65_01388 PF01250 Ribosomal protein S6 CF65_01390 PF00717 Peptidase S24-like CF65_01390 PF01726 LexA DNA binding domain CF65_01391 PF01553 Acyltransferase CF65_01393 PF00664 ABC transporter transmembrane region CF65_01393 PF00005 ABC transporter CF65_01394 PF12833 Helix-turn-helix domain CF65_01394 PF02311 AraC-like ligand binding domain CF65_01395 PF02627 Carboxymuconolactone decarboxylase family CF65_01396 PF01075 Glycosyltransferase family 9 (heptosyltransferase) CF65_01400 PF01467 Cytidylyltransferase-like CF65_01401 PF00534 Glycosyl transferases group 1 CF65_01401 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) CF65_01402 PF00535 Glycosyl transferase family 2 CF65_01407 PF01551 Peptidase family M23 CF65_01407 PF01476 LysM domain CF65_01409 PF09335 SNARE associated Golgi protein CF65_01411 PF01975 Survival protein SurE CF65_01413 PF01142 tRNA pseudouridine synthase D (TruD) CF65_01416 PF02542 YgbB family CF65_01417 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CF65_01418 PF04977 Septum formation initiator CF65_01419 PF00834 Ribulose-phosphate 3 epimerase family CF65_01421 PF13419 Haloacid dehalogenase-like hydrolase CF65_01422 PF00005 ABC transporter CF65_01423 PF18075 FtsX extracellular domain CF65_01424 PF00585 C-terminal regulatory domain of Threonine dehydratase CF65_01424 PF00291 Pyridoxal-phosphate dependent enzyme CF65_01426 PF00291 Pyridoxal-phosphate dependent enzyme CF65_01426 PF00585 C-terminal regulatory domain of Threonine dehydratase CF65_01428 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF65_01428 PF00205 Thiamine pyrophosphate enzyme, central domain CF65_01429 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF65_01432 PF12146 Serine aminopeptidase, S33 CF65_01434 PF04932 O-Antigen ligase CF65_01436 PF01116 Fructose-bisphosphate aldolase class-II CF65_01437 PF00162 Phosphoglycerate kinase CF65_01438 PF00445 Ribonuclease T2 family CF65_01439 PF00037 4Fe-4S binding domain CF65_01441 PF00588 SpoU rRNA Methylase family CF65_01441 PF08032 RNA 2'-O ribose methyltransferase substrate binding CF65_01442 PF13091 PLD-like domain CF65_01444 PF13333 Integrase core domain CF65_01444 PF13276 HTH-like domain CF65_01444 PF00665 Integrase core domain CF65_01449 PF00589 Phage integrase family CF65_01449 PF13356 Arm DNA-binding domain CF65_01451 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF65_01451 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF65_01455 PF13407 Periplasmic binding protein domain CF65_01456 PF00005 ABC transporter CF65_01457 PF02653 Branched-chain amino acid transport system / permease component CF65_01458 PF00155 Aminotransferase class I and II CF65_01459 PF03553 Na+/H+ antiporter family CF65_01462 PF12833 Helix-turn-helix domain CF65_01463 PF07690 Major Facilitator Superfamily CF65_01465 PF03830 PTS system sorbose subfamily IIB component CF65_01465 PF03610 PTS system fructose IIA component CF65_01466 PF03609 PTS system sorbose-specific iic component CF65_01467 PF03613 PTS system mannose/fructose/sorbose family IID component CF65_01471 PF02384 N-6 DNA Methylase CF65_01471 PF12161 HsdM N-terminal domain CF65_01473 PF01420 Type I restriction modification DNA specificity domain CF65_01477 PF12008 Type I restriction and modification enzyme - subunit R C terminal CF65_01477 PF18766 SWI2/SNF2 ATPase CF65_01477 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CF65_01479 PF13416 Bacterial extracellular solute-binding protein CF65_01480 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CF65_01482 PF02874 ATP synthase alpha/beta family, beta-barrel domain CF65_01482 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF65_01484 PF00231 ATP synthase CF65_01486 PF02874 ATP synthase alpha/beta family, beta-barrel domain CF65_01486 PF00306 ATP synthase alpha/beta chain, C terminal domain CF65_01486 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CF65_01487 PF00213 ATP synthase delta (OSCP) subunit CF65_01488 PF00430 ATP synthase B/B' CF(0) CF65_01489 PF00137 ATP synthase subunit C CF65_01490 PF00119 ATP synthase A chain CF65_01491 PF03899 ATP synthase I chain CF65_01492 PF02527 rRNA small subunit methyltransferase G CF65_01494 PF01638 HxlR-like helix-turn-helix CF65_01495 PF05368 NmrA-like family CF65_01496 PF13932 GidA associated domain CF65_01496 PF01134 Glucose inhibited division protein A CF65_01497 PF00258 Flavodoxin CF65_01498 PF06005 Cell division protein ZapB CF65_01499 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CF65_01502 PF06426 Serine acetyltransferase, N-terminal CF65_01502 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_01503 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CF65_01503 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CF65_01506 PF02556 Preprotein translocase subunit SecB CF65_01507 PF00581 Rhodanese-like domain CF65_01508 PF03605 Anaerobic c4-dicarboxylate membrane transporter CF65_01509 PF00005 ABC transporter CF65_01509 PF00664 ABC transporter transmembrane region CF65_01510 PF00005 ABC transporter CF65_01510 PF00664 ABC transporter transmembrane region CF65_01511 PF00440 Bacterial regulatory proteins, tetR family CF65_01513 PF03466 LysR substrate binding domain CF65_01513 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_01514 PF08534 Redoxin CF65_01514 PF00462 Glutaredoxin CF65_01515 PF04102 SlyX CF65_01517 PF01346 Domain amino terminal to FKBP-type peptidyl-prolyl isomerase CF65_01517 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF65_01519 PF08348 YheO-like PAS domain CF65_01519 PF13309 HTH domain CF65_01522 PF02635 DsrE/DsrF-like family CF65_01523 PF04077 DsrH like protein CF65_01524 PF00005 ABC transporter CF65_01525 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01526 PF00497 Bacterial extracellular solute-binding proteins, family 3 CF65_01528 PF01266 FAD dependent oxidoreductase CF65_01533 PF13274 Protein of unknown function (DUF4065) CF65_01534 PF04607 Region found in RelA / SpoT proteins CF65_01537 PF01380 SIS domain CF65_01538 PF03702 Anhydro-N-acetylmuramic acid kinase CF65_01539 PF12804 MobA-like NTP transferase domain CF65_01539 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_01546 PF00455 DeoR C terminal sensor domain CF65_01546 PF08220 DeoR-like helix-turn-helix domain CF65_01547 PF01791 DeoC/LacD family aldolase CF65_01552 PF13617 YnbE-like lipoprotein CF65_01554 PF01914 MarC family integral membrane protein CF65_01557 PF00154 recA bacterial DNA recombination protein CF65_01559 PF02631 RecX family CF65_01561 PF01042 Endoribonuclease L-PSP CF65_01563 PF02779 Transketolase, pyrimidine binding domain CF65_01563 PF00456 Transketolase, thiamine diphosphate binding domain CF65_01563 PF02780 Transketolase, C-terminal domain CF65_01564 PF00923 Transaldolase/Fructose-6-phosphate aldolase CF65_01568 PF00005 ABC transporter CF65_01569 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF65_01569 PF00005 ABC transporter CF65_01571 PF12911 N-terminal TM domain of oligopeptide transport permease C CF65_01571 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01572 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01573 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF65_01575 PF04317 YcjX-like family, DUF463 CF65_01577 PF05128 Domain of unknown function (DUF697) CF65_01579 PF00158 Sigma-54 interaction domain CF65_01579 PF18024 Helix-turn-helix domain CF65_01584 PF17209 Hfq protein CF65_01586 PF08676 MutL C terminal dimerisation domain CF65_01586 PF01119 DNA mismatch repair protein, C-terminal domain CF65_01588 PF01476 LysM domain CF65_01588 PF01520 N-acetylmuramoyl-L-alanine amidase CF65_01589 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CF65_01593 PF00535 Glycosyl transferase family 2 CF65_01594 PF17284 Spermidine synthase tetramerisation domain CF65_01596 PF00884 Sulfatase CF65_01597 PF00929 Exonuclease CF65_01598 PF03193 RsgA GTPase CF65_01599 PF00381 PTS HPr component phosphorylation site CF65_01600 PF00391 PEP-utilising enzyme, mobile domain CF65_01600 PF02896 PEP-utilising enzyme, TIM barrel domain CF65_01600 PF05524 PEP-utilising enzyme, N-terminal CF65_01601 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CF65_01603 PF01432 Peptidase family M3 CF65_01604 PF04304 Protein of unknown function (DUF454) CF65_01607 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF65_01608 PF01063 Amino-transferase class IV CF65_01609 PF00425 chorismate binding enzyme CF65_01611 PF00117 Glutamine amidotransferase class-I CF65_01614 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF65_01614 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF65_01615 PF02687 FtsX-like permease family CF65_01615 PF12704 MacB-like periplasmic core domain CF65_01616 PF00005 ABC transporter CF65_01618 PF02687 FtsX-like permease family CF65_01618 PF12704 MacB-like periplasmic core domain CF65_01619 PF00793 DAHP synthetase I family CF65_01621 PF00772 DnaB-like helicase N terminal domain CF65_01621 PF03796 DnaB-like helicase C terminal domain CF65_01623 PF00842 Alanine racemase, C-terminal domain CF65_01623 PF01168 Alanine racemase, N-terminal domain CF65_01624 PF00342 Phosphoglucose isomerase CF65_01625 PF00885 6,7-dimethyl-8-ribityllumazine synthase CF65_01626 PF01029 NusB family CF65_01628 PF00586 AIR synthase related protein, N-terminal domain CF65_01628 PF02769 AIR synthase related protein, C-terminal domain CF65_01629 PF04608 Phosphatidylglycerophosphatase A CF65_01630 PF01810 LysE type translocator CF65_01631 PF05173 Dihydrodipicolinate reductase, C-terminus CF65_01631 PF01113 Dihydrodipicolinate reductase, N-terminus CF65_01633 PF00111 2Fe-2S iron-sulfur cluster binding domain CF65_01635 PF00268 Ribonucleotide reductase, small chain CF65_01637 PF03477 ATP cone domain CF65_01637 PF00317 Ribonucleotide reductase, all-alpha domain CF65_01637 PF02867 Ribonucleotide reductase, barrel domain CF65_01640 PF18766 SWI2/SNF2 ATPase CF65_01640 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CF65_01640 PF12008 Type I restriction and modification enzyme - subunit R C terminal CF65_01644 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01645 PF08402 TOBE domain CF65_01645 PF00005 ABC transporter CF65_01648 PF00128 Alpha amylase, catalytic domain CF65_01649 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01650 PF14785 Maltose transport system permease protein MalF P2 domain CF65_01650 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01654 PF01547 Bacterial extracellular solute-binding protein CF65_01656 PF17912 MalK OB fold domain CF65_01656 PF00005 ABC transporter CF65_01657 PF02264 LamB porin CF65_01658 PF07148 Maltose operon periplasmic protein precursor (MalM) CF65_01661 PF00899 ThiF family CF65_01662 PF03454 MoeA C-terminal region (domain IV) CF65_01662 PF00994 Probable molybdopterin binding domain CF65_01662 PF03453 MoeA N-terminal region (domain I and II) CF65_01663 PF01227 GTP cyclohydrolase I CF65_01666 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CF65_01668 PF03449 Transcription elongation factor, N-terminal CF65_01668 PF01272 Transcription elongation factor, GreA/GreB, C-term CF65_01670 PF01985 CRS1 / YhbY (CRM) domain CF65_01671 PF05973 Phage derived protein Gp49-like (DUF891) CF65_01672 PF01381 Helix-turn-helix CF65_01673 PF00677 Lumazine binding domain CF65_01675 PF01554 MatE CF65_01678 PF04073 Aminoacyl-tRNA editing domain CF65_01682 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01684 PF00005 ABC transporter CF65_01685 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CF65_01685 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CF65_01687 PF01523 Putative modulator of DNA gyrase CF65_01688 PF01835 MG2 domain CF65_01688 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain CF65_01688 PF11974 Bacterial alpha-2-macroglobulin MG3 domain CF65_01688 PF00207 Alpha-2-macroglobulin family CF65_01688 PF07703 Alpha-2-macroglobulin bait region domain CF65_01688 PF17962 Bacterial macroglobulin domain 6 CF65_01688 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain CF65_01689 PF03601 Conserved hypothetical protein 698 CF65_01690 PF06832 Penicillin-Binding Protein C-terminus Family CF65_01690 PF00912 Transglycosylase CF65_01690 PF00905 Penicillin binding protein transpeptidase domain CF65_01692 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CF65_01694 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF65_01695 PF03611 PTS system sugar-specific permease component CF65_01698 PF00455 DeoR C terminal sensor domain CF65_01698 PF08220 DeoR-like helix-turn-helix domain CF65_01700 PF01261 Xylose isomerase-like TIM barrel CF65_01703 PF00596 Class II Aldolase and Adducin N-terminal domain CF65_01704 PF03222 Tryptophan/tyrosine permease family CF65_01705 PF02837 Glycosyl hydrolases family 2, sugar binding domain CF65_01705 PF00703 Glycosyl hydrolases family 2 CF65_01705 PF02929 Beta galactosidase small chain CF65_01705 PF02836 Glycosyl hydrolases family 2, TIM barrel domain CF65_01705 PF16353 Domain of unknown function(DUF4981) CF65_01708 PF00462 Glutaredoxin CF65_01709 PF00881 Nitroreductase family CF65_01710 PF18030 RimK PreATP-grasp domain CF65_01710 PF08443 RimK-like ATP-grasp domain CF65_01711 PF05728 Uncharacterised protein family (UPF0227) CF65_01715 PF16036 Chalcone isomerase-like CF65_01717 PF00206 Lyase CF65_01717 PF10415 Fumarase C C-terminus CF65_01718 PF04364 DNA polymerase III chi subunit, HolC CF65_01724 PF10458 Valyl tRNA synthetase tRNA binding arm CF65_01724 PF00133 tRNA synthetases class I (I, L, M and V) CF65_01724 PF08264 Anticodon-binding domain of tRNA CF65_01728 PF13657 HipA N-terminal domain CF65_01728 PF07804 HipA-like C-terminal domain CF65_01731 PF07690 Major Facilitator Superfamily CF65_01732 PF00529 HlyD membrane-fusion protein of T1SS CF65_01732 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF65_01734 PF00210 Ferritin-like domain CF65_01737 PF00575 S1 RNA binding domain CF65_01737 PF00773 RNB domain CF65_01737 PF08206 Ribonuclease B OB domain CF65_01739 PF01784 NIF3 (NGG1p interacting factor 3) CF65_01740 PF04055 Radical SAM superfamily CF65_01741 PF01242 6-pyruvoyl tetrahydropterin synthase CF65_01743 PF00152 tRNA synthetases class II (D, K and N) CF65_01743 PF01336 OB-fold nucleic acid binding domain CF65_01744 PF00472 RF-1 domain CF65_01744 PF03462 PCRF domain CF65_01745 PF03462 PCRF domain CF65_01745 PF00472 RF-1 domain CF65_01746 PF10411 Disulfide bond isomerase protein N-terminus CF65_01746 PF13098 Thioredoxin-like domain CF65_01747 PF02272 DHHA1 domain CF65_01747 PF01368 DHH family CF65_01747 PF17768 RecJ OB domain CF65_01750 PF01048 Phosphorylase superfamily CF65_01751 PF10670 Domain of unknown function (DUF4198) CF65_01755 PF01891 Cobalt uptake substrate-specific transmembrane region CF65_01757 PF00005 ABC transporter CF65_01758 PF02492 CobW/HypB/UreG, nucleotide-binding domain CF65_01759 PF01924 Hydrogenase formation hypA family CF65_01760 PF02769 AIR synthase related protein, C-terminal domain CF65_01760 PF00586 AIR synthase related protein, N-terminal domain CF65_01763 PF00717 Peptidase S24-like CF65_01763 PF01381 Helix-turn-helix CF65_01765 PF02316 Mu DNA-binding domain CF65_01765 PF09039 Mu DNA binding, I gamma subdomain CF65_01765 PF02914 Bacteriophage Mu transposase CF65_01765 PF09299 Mu transposase, C-terminal CF65_01772 PF08501 Shikimate dehydrogenase substrate binding domain CF65_01774 PF02219 Methylenetetrahydrofolate reductase CF65_01776 PF03739 Lipopolysaccharide export system permease LptF/LptG CF65_01777 PF03739 Lipopolysaccharide export system permease LptF/LptG CF65_01778 PF00883 Cytosol aminopeptidase family, catalytic domain CF65_01778 PF02789 Cytosol aminopeptidase family, N-terminal domain CF65_01779 PF00005 ABC transporter CF65_01779 PF03459 TOBE domain CF65_01780 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01782 PF03459 TOBE domain CF65_01782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_01784 PF00939 Sodium:sulfate symporter transmembrane region CF65_01789 PF13180 PDZ domain CF65_01790 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CF65_01790 PF01872 RibD C-terminal domain CF65_01792 PF03477 ATP cone domain CF65_01793 PF18125 RlmM ferredoxin-like domain CF65_01793 PF01728 FtsJ-like methyltransferase CF65_01794 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_01794 PF03466 LysR substrate binding domain CF65_01796 PF01063 Amino-transferase class IV CF65_01801 PF00056 lactate/malate dehydrogenase, NAD binding domain CF65_01801 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CF65_01803 PF01316 Arginine repressor, DNA binding domain CF65_01803 PF02863 Arginine repressor, C-terminal domain CF65_01804 PF08338 Domain of unknown function (DUF1731) CF65_01804 PF01370 NAD dependent epimerase/dehydratase family CF65_01805 PF02508 Rnf-Nqr subunit, membrane protein CF65_01807 PF04060 Putative Fe-S cluster CF65_01808 PF12838 4Fe-4S dicluster domain CF65_01808 PF13375 RnfC Barrel sandwich hybrid domain CF65_01808 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit CF65_01810 PF03116 NQR2, RnfD, RnfE family CF65_01811 PF04205 FMN-binding domain CF65_01813 PF02508 Rnf-Nqr subunit, membrane protein CF65_01814 PF00730 HhH-GPD superfamily base excision DNA repair protein CF65_01814 PF00633 Helix-hairpin-helix motif CF65_01814 PF10576 Iron-sulfur binding domain of endonuclease III CF65_01815 PF00209 Sodium:neurotransmitter symporter family CF65_01818 PF00950 ABC 3 transport family CF65_01820 PF00005 ABC transporter CF65_01822 PF04225 Opacity-associated protein A LysM-like domain CF65_01822 PF01551 Peptidase family M23 CF65_01824 PF00005 ABC transporter CF65_01825 PF01032 FecCD transport family CF65_01826 PF01032 FecCD transport family CF65_01827 PF01497 Periplasmic binding protein CF65_01830 PF02872 5'-nucleotidase, C-terminal domain CF65_01830 PF00149 Calcineurin-like phosphoesterase CF65_01832 PF04216 Protein involved in formate dehydrogenase formation CF65_01835 PF04076 Bacterial OB fold (BOF) protein CF65_01837 PF00486 Transcriptional regulatory protein, C terminal CF65_01837 PF00072 Response regulator receiver domain CF65_01839 PF08765 Mor transcription activator family CF65_01842 PF00072 Response regulator receiver domain CF65_01842 PF00486 Transcriptional regulatory protein, C terminal CF65_01843 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_01843 PF00512 His Kinase A (phospho-acceptor) domain CF65_01843 PF08521 Two-component sensor kinase N-terminal CF65_01846 PF10688 Bacterial inner membrane protein CF65_01848 PF00764 Arginosuccinate synthase CF65_01850 PF01370 NAD dependent epimerase/dehydratase family CF65_01852 PF16658 Class II release factor RF3, C-terminal domain CF65_01852 PF03144 Elongation factor Tu domain 2 CF65_01852 PF00009 Elongation factor Tu GTP binding domain CF65_01854 PF05973 Phage derived protein Gp49-like (DUF891) CF65_01857 PF08335 GlnD PII-uridylyltransferase CF65_01857 PF03710 Glutamate-ammonia ligase adenylyltransferase CF65_01861 PF08543 Phosphomethylpyrimidine kinase CF65_01866 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01867 PF00005 ABC transporter CF65_01868 PF06968 Biotin and Thiamin Synthesis associated domain CF65_01868 PF04055 Radical SAM superfamily CF65_01869 PF00595 PDZ domain CF65_01871 PF06295 Protein of unknown function (DUF1043) CF65_01872 PF18381 YcaO cyclodehydratase C-terminal domain CF65_01872 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding CF65_01873 PF01238 Phosphomannose isomerase type I CF65_01874 PF07411 Domain of unknown function (DUF1508) CF65_01875 PF00367 phosphotransferase system, EIIB CF65_01875 PF02378 Phosphotransferase system, EIIC CF65_01876 PF02378 Phosphotransferase system, EIIC CF65_01876 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CF65_01876 PF00367 phosphotransferase system, EIIB CF65_01878 PF00753 Metallo-beta-lactamase superfamily CF65_01878 PF16123 Hydroxyacylglutathione hydrolase C-terminus CF65_01879 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CF65_01879 PF01488 Shikimate / quinate 5-dehydrogenase CF65_01879 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CF65_01880 PF01047 MarR family CF65_01880 PF00480 ROK family CF65_01881 PF05191 Adenylate kinase, active site lid CF65_01883 PF07690 Major Facilitator Superfamily CF65_01885 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA CF65_01886 PF01370 NAD dependent epimerase/dehydratase family CF65_01887 PF05656 Protein of unknown function (DUF805) CF65_01889 PF00860 Permease family CF65_01890 PF01171 PP-loop family CF65_01890 PF09179 TilS substrate binding domain CF65_01890 PF11734 TilS substrate C-terminal domain CF65_01891 PF08543 Phosphomethylpyrimidine kinase CF65_01893 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CF65_01894 PF00576 HIUase/Transthyretin family CF65_01906 PF00717 Peptidase S24-like CF65_01906 PF01726 LexA DNA binding domain CF65_01913 PF00117 Glutamine amidotransferase class-I CF65_01913 PF02540 NAD synthase CF65_01913 PF00958 GMP synthase C terminal domain CF65_01914 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ CF65_01915 PF04221 RelB antitoxin CF65_01918 PF03606 C4-dicarboxylate anaerobic carrier CF65_01919 PF17384 RimP C-terminal SH3 domain CF65_01919 PF02576 RimP N-terminal domain CF65_01920 PF00575 S1 RNA binding domain CF65_01920 PF08529 NusA N-terminal domain CF65_01920 PF13184 NusA-like KH domain CF65_01922 PF08364 Bacterial translation initiation factor IF-2 associated region CF65_01922 PF00009 Elongation factor Tu GTP binding domain CF65_01922 PF04760 Translation initiation factor IF-2, N-terminal region CF65_01922 PF11987 Translation-initiation factor 2 CF65_01923 PF18273 Type III R-M EcoP15I C-terminal domain CF65_01923 PF01555 DNA methylase CF65_01928 PF00176 SNF2 family N-terminal domain CF65_01928 PF00271 Helicase conserved C-terminal domain CF65_01930 PF02033 Ribosome-binding factor A CF65_01932 PF16198 tRNA pseudouridylate synthase B C-terminal domain CF65_01932 PF09157 Pseudouridine synthase II TruB, C-terminal CF65_01932 PF01509 TruB family pseudouridylate synthase (N terminal domain) CF65_01936 PF01479 S4 domain CF65_01936 PF00579 tRNA synthetases class I (W and Y) CF65_01937 PF03749 Sugar fermentation stimulation protein RE domain CF65_01937 PF17746 SfsA N-terminal OB domain CF65_01938 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch CF65_01938 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CF65_01938 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CF65_01939 PF02233 NAD(P) transhydrogenase beta subunit CF65_01944 PF02661 Fic/DOC family CF65_01944 PF12728 Helix-turn-helix domain CF65_01945 PF02769 AIR synthase related protein, C-terminal domain CF65_01945 PF00586 AIR synthase related protein, N-terminal domain CF65_01948 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01950 PF00528 Binding-protein-dependent transport system inner membrane component CF65_01954 PF01541 GIY-YIG catalytic domain CF65_01954 PF08459 UvrC Helix-hairpin-helix N-terminal CF65_01954 PF02151 UvrB/uvrC motif CF65_01956 PF02348 Cytidylyltransferase CF65_01957 PF03966 Trm112p-like protein CF65_01959 PF02606 Tetraacyldisaccharide-1-P 4'-kinase CF65_01961 PF00005 ABC transporter CF65_01961 PF00664 ABC transporter transmembrane region CF65_01962 PF03772 Competence protein CF65_01962 PF13567 Domain of unknown function (DUF4131) CF65_01962 PF00753 Metallo-beta-lactamase superfamily CF65_01963 PF01258 Prokaryotic dksA/traR C4-type zinc finger CF65_01965 PF01743 Poly A polymerase head domain CF65_01965 PF12627 Probable RNA and SrmB- binding site of polymerase A CF65_01965 PF12626 Polymerase A arginine-rich C-terminus CF65_01966 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CF65_01972 PF07085 DRTGG domain CF65_01972 PF01515 Phosphate acetyl/butaryl transferase CF65_01973 PF00871 Acetokinase family CF65_01974 PF04217 Protein of unknown function, DUF412 CF65_01976 PF02674 Colicin V production protein CF65_01981 PF02446 4-alpha-glucanotransferase CF65_01982 PF00343 Carbohydrate phosphorylase CF65_01983 PF00196 Bacterial regulatory proteins, luxR family CF65_01983 PF17874 MalT-like TPR region CF65_01984 PF09313 Domain of unknown function (DUF1971) CF65_01984 PF03848 Tellurite resistance protein TehB CF65_01985 PF17831 Pyruvate dehydrogenase E1 component middle domain CF65_01985 PF00456 Transketolase, thiamine diphosphate binding domain CF65_01986 PF00364 Biotin-requiring enzyme CF65_01986 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CF65_01986 PF02817 e3 binding domain CF65_01988 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CF65_01988 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF65_01991 PF00881 Nitroreductase family CF65_01992 PF01343 Peptidase family S49 CF65_01994 PF01817 Chorismate mutase type II CF65_01994 PF02153 Prephenate dehydrogenase CF65_01995 PF01817 Chorismate mutase type II CF65_01995 PF02153 Prephenate dehydrogenase CF65_01996 PF01817 Chorismate mutase type II CF65_01996 PF02153 Prephenate dehydrogenase CF65_01997 PF01300 Telomere recombination CF65_01998 PF01479 S4 domain CF65_01998 PF00849 RNA pseudouridylate synthase CF65_01999 PF03466 LysR substrate binding domain CF65_01999 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_02000 PF00132 Bacterial transferase hexapeptide (six repeats) CF65_02000 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal CF65_02000 PF14602 Hexapeptide repeat of succinyl-transferase CF65_02001 PF04269 Protein of unknown function, DUF440 CF65_02003 PF00356 Bacterial regulatory proteins, lacI family CF65_02004 PF00561 alpha/beta hydrolase fold CF65_02005 PF02698 DUF218 domain CF65_02006 PF00356 Bacterial regulatory proteins, lacI family CF65_02006 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF65_02010 PF08534 Redoxin CF65_02011 PF02683 Cytochrome C biogenesis protein transmembrane region CF65_02012 PF01625 Peptide methionine sulfoxide reductase CF65_02012 PF01641 SelR domain CF65_02013 PF00484 Carbonic anhydrase CF65_02014 PF04972 BON domain CF65_02015 PF13580 SIS domain CF65_02017 PF02021 Uncharacterised protein family UPF0102 CF65_02018 PF04348 LppC putative lipoprotein CF65_02020 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CF65_02021 PF01266 FAD dependent oxidoreductase CF65_02021 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CF65_02023 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF65_02024 PF02525 Flavodoxin-like fold CF65_02026 PF08496 Peptidase family S49 N-terminal CF65_02026 PF01343 Peptidase family S49 CF65_02027 PF00691 OmpA family CF65_02027 PF05736 OprF membrane domain CF65_02030 PF03129 Anticodon binding domain CF65_02030 PF02824 TGS domain CF65_02030 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CF65_02030 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF65_02031 PF01555 DNA methylase CF65_02031 PF18273 Type III R-M EcoP15I C-terminal domain CF65_02034 PF00970 Oxidoreductase FAD-binding domain CF65_02034 PF00175 Oxidoreductase NAD-binding domain CF65_02035 PF05198 Translation initiation factor IF-3, N-terminal domain CF65_02035 PF00707 Translation initiation factor IF-3, C-terminal domain CF65_02038 PF01632 Ribosomal protein L35 CF65_02039 PF00453 Ribosomal protein L20 CF65_02040 PF01797 Transposase IS200 like CF65_02042 PF01791 DeoC/LacD family aldolase CF65_02043 PF08013 Tagatose 6 phosphate kinase CF65_02044 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF65_02045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CF65_02046 PF03611 PTS system sugar-specific permease component CF65_02047 PF00107 Zinc-binding dehydrogenase CF65_02047 PF08240 Alcohol dehydrogenase GroES-like domain CF65_02048 PF08220 DeoR-like helix-turn-helix domain CF65_02048 PF00455 DeoR C terminal sensor domain CF65_02050 PF02780 Transketolase, C-terminal domain CF65_02050 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CF65_02050 PF02779 Transketolase, pyrimidine binding domain CF65_02051 PF00348 Polyprenyl synthetase CF65_02052 PF02609 Exonuclease VII small subunit CF65_02053 PF17848 Acetyl-coA carboxylase zinc finger domain CF65_02053 PF01039 Carboxyl transferase domain CF65_02056 PF08245 Mur ligase middle domain CF65_02057 PF00300 Histidine phosphatase superfamily (branch 1) CF65_02060 PF13396 Phospholipase_D-nuclease N-terminal CF65_02060 PF13091 PLD-like domain CF65_02062 PF03956 Lysine exporter LysO CF65_02063 PF00849 RNA pseudouridylate synthase CF65_02069 PF03831 PhnA domain CF65_02069 PF08274 PhnA Zinc-Ribbon CF65_02077 PF02321 Outer membrane efflux protein CF65_02080 PF02687 FtsX-like permease family CF65_02080 PF12704 MacB-like periplasmic core domain CF65_02080 PF00005 ABC transporter CF65_02081 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CF65_02082 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain CF65_02082 PF00749 tRNA synthetases class I (E and Q), catalytic domain CF65_02087 PF00128 Alpha amylase, catalytic domain CF65_02087 PF02806 Alpha amylase, C-terminal all-beta domain CF65_02087 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CF65_02088 PF00128 Alpha amylase, catalytic domain CF65_02088 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CF65_02088 PF18390 Glycogen debranching enzyme C-terminal domain CF65_02089 PF18390 Glycogen debranching enzyme C-terminal domain CF65_02089 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CF65_02089 PF00128 Alpha amylase, catalytic domain CF65_02090 PF00483 Nucleotidyl transferase CF65_02092 PF08323 Starch synthase catalytic domain CF65_02092 PF00534 Glycosyl transferases group 1 CF65_02094 PF00343 Carbohydrate phosphorylase CF65_02097 PF09335 SNARE associated Golgi protein CF65_02099 PF01386 Ribosomal L25p family CF65_02101 PF00768 D-alanyl-D-alanine carboxypeptidase CF65_02103 PF00768 D-alanyl-D-alanine carboxypeptidase CF65_02105 PF17192 MukF middle domain CF65_02105 PF17193 MukF C-terminal domain CF65_02105 PF03882 MukF winged-helix domain CF65_02108 PF01553 Acyltransferase CF65_02108 PF00501 AMP-binding enzyme CF65_02111 PF04288 MukE-like family CF65_02112 PF16330 MukB hinge domain CF65_02112 PF04310 MukB N-terminal CF65_02114 PF00929 Exonuclease CF65_02114 PF08411 Exonuclease C-terminal CF65_02117 PF13333 Integrase core domain CF65_02117 PF00665 Integrase core domain CF65_02117 PF13276 HTH-like domain CF65_02120 PF00210 Ferritin-like domain CF65_02121 PF00210 Ferritin-like domain CF65_02124 PF00027 Cyclic nucleotide-binding domain CF65_02124 PF13545 Crp-like helix-turn-helix domain CF65_02125 PF00582 Universal stress protein family CF65_02126 PF10670 Domain of unknown function (DUF4198) CF65_02128 PF01131 DNA topoisomerase CF65_02128 PF08272 Topoisomerase I zinc-ribbon-like CF65_02128 PF01396 Topoisomerase DNA binding C4 zinc finger CF65_02128 PF01751 Toprim domain CF65_02131 PF02811 PHP domain CF65_02132 PF01180 Dihydroorotate dehydrogenase CF65_02134 PF17432 Domain of unknown function (DUF3458_C) ARM repeats CF65_02134 PF11940 Domain of unknown function (DUF3458) Ig-like fold CF65_02134 PF01433 Peptidase family M1 domain CF65_02136 PF00155 Aminotransferase class I and II CF65_02139 PF13533 Biotin-lipoyl like CF65_02140 PF00005 ABC transporter CF65_02146 PF00005 ABC transporter CF65_02150 PF13693 Winged helix-turn-helix DNA-binding CF65_02151 PF07715 TonB-dependent Receptor Plug Domain CF65_02151 PF00593 TonB dependent receptor CF65_02152 PF00005 ABC transporter CF65_02158 PF00593 TonB dependent receptor CF65_02160 PF01171 PP-loop family CF65_02162 PF00877 NlpC/P60 family CF65_02163 PF00216 Bacterial DNA-binding protein CF65_02164 PF01588 Putative tRNA binding domain CF65_02164 PF03147 Ferredoxin-fold anticodon binding domain CF65_02164 PF03483 B3/4 domain CF65_02164 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CF65_02164 PF03484 tRNA synthetase B5 domain CF65_02166 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CF65_02166 PF01409 tRNA synthetases class II core domain (F) CF65_02168 PF01435 Peptidase family M48 CF65_02171 PF00571 CBS domain CF65_02171 PF01380 SIS domain CF65_02173 PF04715 Anthranilate synthase component I, N terminal region CF65_02173 PF00425 chorismate binding enzyme CF65_02175 PF00117 Glutamine amidotransferase class-I CF65_02177 PF14552 Tautomerase enzyme CF65_02179 PF00591 Glycosyl transferase family, a/b domain CF65_02179 PF02885 Glycosyl transferase family, helical bundle domain CF65_02181 PF01381 Helix-turn-helix CF65_02182 PF00218 Indole-3-glycerol phosphate synthase CF65_02182 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CF65_02184 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CF65_02184 PF00218 Indole-3-glycerol phosphate synthase CF65_02190 PF01455 HupF/HypC family CF65_02193 PF04277 Oxaloacetate decarboxylase, gamma chain CF65_02195 PF00682 HMGL-like CF65_02195 PF02436 Conserved carboxylase domain CF65_02195 PF00364 Biotin-requiring enzyme CF65_02196 PF03977 Na+-transporting oxaloacetate decarboxylase beta subunit CF65_02201 PF07715 TonB-dependent Receptor Plug Domain CF65_02201 PF00593 TonB dependent receptor CF65_02202 PF07715 TonB-dependent Receptor Plug Domain CF65_02202 PF00593 TonB dependent receptor CF65_02205 PF00106 short chain dehydrogenase CF65_02206 PF00291 Pyridoxal-phosphate dependent enzyme CF65_02208 PF00290 Tryptophan synthase alpha chain CF65_02210 PF03477 ATP cone domain CF65_02210 PF00317 Ribonucleotide reductase, all-alpha domain CF65_02210 PF02867 Ribonucleotide reductase, barrel domain CF65_02214 PF00224 Pyruvate kinase, barrel domain CF65_02214 PF02887 Pyruvate kinase, alpha/beta domain CF65_02215 PF03992 Antibiotic biosynthesis monooxygenase CF65_02217 PF01791 DeoC/LacD family aldolase CF65_02218 PF01791 DeoC/LacD family aldolase CF65_02219 PF13407 Periplasmic binding protein domain CF65_02220 PF02653 Branched-chain amino acid transport system / permease component CF65_02224 PF02653 Branched-chain amino acid transport system / permease component CF65_02225 PF00005 ABC transporter CF65_02226 PF00005 ABC transporter CF65_02228 PF04198 Putative sugar-binding domain CF65_02228 PF00325 Bacterial regulatory proteins, crp family CF65_02230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CF65_02230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CF65_02232 PF00480 ROK family CF65_02233 PF00152 tRNA synthetases class II (D, K and N) CF65_02233 PF01336 OB-fold nucleic acid binding domain CF65_02235 PF04386 Stringent starvation protein B CF65_02236 PF13417 Glutathione S-transferase, N-terminal domain CF65_02236 PF00043 Glutathione S-transferase, C-terminal domain CF65_02237 PF02391 MoaE protein CF65_02239 PF02597 ThiS family CF65_02241 PF01967 MoaC family CF65_02242 PF04055 Radical SAM superfamily CF65_02242 PF06463 Molybdenum Cofactor Synthesis C CF65_02243 PF01933 Uncharacterised protein family UPF0052 CF65_02246 PF03575 Peptidase family S51 CF65_02249 PF02568 Thiamine biosynthesis protein (ThiI) CF65_02249 PF02926 THUMP domain CF65_02250 PF03264 NapC/NirT cytochrome c family, N-terminal region CF65_02251 PF01568 Molydopterin dinucleotide binding domain CF65_02251 PF18364 Molybdopterin oxidoreductase N-terminal domain CF65_02251 PF00384 Molybdopterin oxidoreductase CF65_02252 PF04237 YjbR CF65_02254 PF00939 Sodium:sulfate symporter transmembrane region CF65_02259 PF05016 ParE toxin of type II toxin-antitoxin system, parDE CF65_02260 PF01416 tRNA pseudouridine synthase CF65_02261 PF00380 Ribosomal protein S9/S16 CF65_02262 PF00572 Ribosomal protein L13 CF65_02265 PF13538 UvrD-like helicase C-terminal domain CF65_02266 PF13361 UvrD-like helicase C-terminal domain CF65_02266 PF00580 UvrD/REP helicase N-terminal domain CF65_02266 PF12705 PD-(D/E)XK nuclease superfamily CF65_02267 PF02635 DsrE/DsrF-like family CF65_02269 PF07977 FabA-like domain CF65_02270 PF13654 AAA domain CF65_02270 PF05362 Lon protease (S16) C-terminal proteolytic domain CF65_02272 PF17414 MatP C-terminal ribbon-helix-helix domain CF65_02272 PF06303 MatP N-terminal domain CF65_02273 PF00313 'Cold-shock' DNA-binding domain CF65_02275 PF03701 Uncharacterised protein family (UPF0181) CF65_02276 PF00849 RNA pseudouridylate synthase CF65_02278 PF04287 tRNA pseudouridine synthase C CF65_02279 PF10071 Zn-ribbon-containing, possibly nucleic-acid-binding protein (DUF2310) CF65_02280 PF14489 QueF-like protein CF65_02280 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term CF65_02281 PF02954 Bacterial regulatory protein, Fis family CF65_02281 PF00072 Response regulator receiver domain CF65_02281 PF00158 Sigma-54 interaction domain CF65_02282 PF14532 Sigma-54 interaction domain CF65_02282 PF00072 Response regulator receiver domain CF65_02282 PF02954 Bacterial regulatory protein, Fis family CF65_02283 PF00486 Transcriptional regulatory protein, C terminal CF65_02283 PF00072 Response regulator receiver domain CF65_02284 PF00672 HAMP domain CF65_02284 PF00512 His Kinase A (phospho-acceptor) domain CF65_02284 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_02286 PF00005 ABC transporter CF65_02286 PF08402 TOBE domain CF65_02288 PF04315 Elongation factor P hydroxylase CF65_02289 PF01434 Peptidase family M41 CF65_02289 PF00004 ATPase family associated with various cellular activities (AAA) CF65_02289 PF17862 AAA+ lid domain CF65_02289 PF06480 FtsH Extracellular CF65_02290 PF01728 FtsJ-like methyltransferase CF65_02291 PF01842 ACT domain CF65_02291 PF00551 Formyl transferase CF65_02292 PF00816 H-NS histone family CF65_02294 PF03553 Na+/H+ antiporter family CF65_02300 PF01177 Asp/Glu/Hydantoin racemase CF65_02301 PF04345 Chorismate lyase CF65_02303 PF00270 DEAD/DEAH box helicase CF65_02303 PF17191 RecG wedge domain CF65_02303 PF00271 Helicase conserved C-terminal domain CF65_02305 PF02824 TGS domain CF65_02305 PF04607 Region found in RelA / SpoT proteins CF65_02305 PF13291 ACT domain CF65_02306 PF01192 RNA polymerase Rpb6 CF65_02307 PF00625 Guanylate kinase CF65_02309 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CF65_02309 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CF65_02310 PF00892 EamA-like transporter family CF65_02312 PF03364 Polyketide cyclase / dehydrase and lipid transport CF65_02313 PF03658 RnfH family Ubiquitin CF65_02315 PF08007 Cupin superfamily protein CF65_02316 PF02601 Exonuclease VII, large subunit CF65_02316 PF13742 OB-fold nucleic acid binding domain CF65_02317 PF03668 P-loop ATPase protein family CF65_02319 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CF65_02320 PF12399 Branched-chain amino acid ATP-binding cassette transporter CF65_02320 PF00005 ABC transporter CF65_02321 PF03968 OstA-like protein CF65_02323 PF06835 Lipopolysaccharide-assembly, LptC-related CF65_02324 PF00005 ABC transporter CF65_02325 PF02405 Permease MlaE CF65_02326 PF02470 MlaD protein CF65_02327 PF05494 MlaC protein CF65_02328 PF13466 STAS domain CF65_02329 PF01722 BolA-like protein CF65_02330 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CF65_02331 PF00664 ABC transporter transmembrane region CF65_02331 PF00005 ABC transporter CF65_02331 PF03412 Peptidase C39 family CF65_02332 PF00535 Glycosyl transferase family 2 CF65_02333 PF04175 Protein of unknown function (DUF406) CF65_02334 PF03349 Outer membrane protein transport protein (OMPP1/FadL/TodX) CF65_02335 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CF65_02335 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CF65_02337 PF02976 DNA mismatch repair enzyme MutH CF65_02338 PF03741 Integral membrane protein TerC family CF65_02342 PF00665 Integrase core domain CF65_02342 PF13333 Integrase core domain CF65_02342 PF13276 HTH-like domain CF65_02343 PF00120 Glutamine synthetase, catalytic domain CF65_02343 PF03951 Glutamine synthetase, beta-Grasp domain CF65_02347 PF03797 Autotransporter beta-domain CF65_02347 PF02395 Immunoglobulin A1 protease CF65_02347 PF03212 Pertactin CF65_02348 PF00578 AhpC/TSA family CF65_02349 PF00701 Dihydrodipicolinate synthetase family CF65_02350 PF06804 NlpB/DapX lipoprotein CF65_02351 PF06804 NlpB/DapX lipoprotein CF65_02352 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02353 PF00571 CBS domain CF65_02353 PF00005 ABC transporter CF65_02354 PF01168 Alanine racemase, N-terminal domain CF65_02357 PF03447 Homoserine dehydrogenase, NAD binding domain CF65_02357 PF00696 Amino acid kinase family CF65_02357 PF13840 ACT domain CF65_02357 PF01842 ACT domain CF65_02357 PF00742 Homoserine dehydrogenase CF65_02358 PF00288 GHMP kinases N terminal domain CF65_02358 PF08544 GHMP kinases C terminal CF65_02360 PF14821 Threonine synthase N terminus CF65_02360 PF00291 Pyridoxal-phosphate dependent enzyme CF65_02362 PF01648 4'-phosphopantetheinyl transferase superfamily CF65_02363 PF01145 SPFH domain / Band 7 family CF65_02365 PF01145 SPFH domain / Band 7 family CF65_02368 PF01725 Ham1 family CF65_02369 PF01906 Putative heavy-metal-binding CF65_02371 PF04055 Radical SAM superfamily CF65_02371 PF06969 HemN C-terminal domain CF65_02374 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CF65_02375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF65_02375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF65_02381 PF01081 KDPG and KHG aldolase CF65_02382 PF02614 Glucuronate isomerase CF65_02383 PF00106 short chain dehydrogenase CF65_02384 PF00294 pfkB family carbohydrate kinase CF65_02385 PF03480 Bacterial extracellular solute-binding protein, family 7 CF65_02387 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CF65_02388 PF13802 Galactose mutarotase-like CF65_02388 PF17137 Domain of unknown function (DUF5110) CF65_02388 PF16338 Domain of unknown function (DUF4968) CF65_02388 PF01055 Glycosyl hydrolases family 31 CF65_02389 PF07729 FCD domain CF65_02389 PF00392 Bacterial regulatory proteins, gntR family CF65_02390 PF03786 D-mannonate dehydratase (UxuA) CF65_02393 PF01740 STAS domain CF65_02393 PF00916 Sulfate permease family CF65_02395 PF05362 Lon protease (S16) C-terminal proteolytic domain CF65_02395 PF00004 ATPase family associated with various cellular activities (AAA) CF65_02395 PF02190 ATP-dependent protease La (LON) substrate-binding domain CF65_02397 PF00140 Sigma-70 factor, region 1.2 CF65_02397 PF04539 Sigma-70 region 3 CF65_02397 PF04545 Sigma-70, region 4 CF65_02397 PF03979 Sigma-70 factor, region 1.1 CF65_02397 PF04542 Sigma-70 region 2 CF65_02397 PF04546 Sigma-70, non-essential region CF65_02398 PF08275 DNA primase catalytic core, N-terminal domain CF65_02398 PF01807 CHC2 zinc finger CF65_02398 PF10410 DnaB-helicase binding domain of primase CF65_02398 PF08278 DNA primase DnaG DnaB-binding CF65_02399 PF01165 Ribosomal protein S21 CF65_02402 PF00814 Glycoprotease family CF65_02407 PF00265 Thymidine kinase CF65_02409 PF12826 Helix-hairpin-helix motif CF65_02409 PF00533 BRCA1 C Terminus (BRCT) domain CF65_02409 PF01653 NAD-dependent DNA ligase adenylation domain CF65_02409 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CF65_02409 PF03120 NAD-dependent DNA ligase OB-fold domain CF65_02410 PF04354 ZipA, C-terminal FtsZ-binding domain CF65_02412 PF00291 Pyridoxal-phosphate dependent enzyme CF65_02416 PF03167 Uracil DNA glycosylase superfamily CF65_02417 PF06071 Protein of unknown function (DUF933) CF65_02417 PF01926 50S ribosome-binding GTPase CF65_02418 PF01195 Peptidyl-tRNA hydrolase CF65_02420 PF13333 Integrase core domain CF65_02420 PF00665 Integrase core domain CF65_02420 PF13276 HTH-like domain CF65_02423 PF00953 Glycosyl transferase family 4 CF65_02425 PF00202 Aminotransferase class-III CF65_02426 PF01966 HD domain CF65_02426 PF08335 GlnD PII-uridylyltransferase CF65_02429 PF00557 Metallopeptidase family M24 CF65_02430 PF01521 Iron-sulphur cluster biosynthesis CF65_02432 PF00905 Penicillin binding protein transpeptidase domain CF65_02432 PF14814 Bifunctional transglycosylase second domain CF65_02432 PF00912 Transglycosylase CF65_02434 PF03239 Iron permease FTR1 family CF65_02436 PF10634 Fe2+ transport protein CF65_02438 PF02687 FtsX-like permease family CF65_02438 PF12704 MacB-like periplasmic core domain CF65_02440 PF00005 ABC transporter CF65_02440 PF02687 FtsX-like permease family CF65_02440 PF12704 MacB-like periplasmic core domain CF65_02442 PF00578 AhpC/TSA family CF65_02446 PF13419 Haloacid dehalogenase-like hydrolase CF65_02450 PF01609 Transposase DDE domain CF65_02454 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold CF65_02454 PF00271 Helicase conserved C-terminal domain CF65_02454 PF04408 Helicase associated domain (HA2) CF65_02454 PF11898 Domain of unknown function (DUF3418) CF65_02454 PF00270 DEAD/DEAH box helicase CF65_02455 PF04241 Protein of unknown function (DUF423) CF65_02456 PF04284 Protein of unknown function (DUF441) CF65_02457 PF00462 Glutaredoxin CF65_02458 PF00691 OmpA family CF65_02458 PF01389 OmpA-like transmembrane domain CF65_02459 PF01565 FAD binding domain CF65_02459 PF02913 FAD linked oxidases, C-terminal domain CF65_02459 PF13183 4Fe-4S dicluster domain CF65_02460 PF03061 Thioesterase superfamily CF65_02461 PF00762 Ferrochelatase CF65_02462 PF08534 Redoxin CF65_02463 PF01979 Amidohydrolase family CF65_02465 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CF65_02466 PF00701 Dihydrodipicolinate synthetase family CF65_02468 PF01418 Helix-turn-helix domain, rpiR family CF65_02468 PF01380 SIS domain CF65_02470 PF00480 ROK family CF65_02472 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase CF65_02473 PF03480 Bacterial extracellular solute-binding protein, family 7 CF65_02474 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component CF65_02474 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component CF65_02476 PF01344 Kelch motif CF65_02477 PF00367 phosphotransferase system, EIIB CF65_02477 PF02378 Phosphotransferase system, EIIC CF65_02478 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CF65_02478 PF00367 phosphotransferase system, EIIB CF65_02478 PF02378 Phosphotransferase system, EIIC CF65_02479 PF01389 OmpA-like transmembrane domain CF65_02479 PF00691 OmpA family CF65_02480 PF00271 Helicase conserved C-terminal domain CF65_02480 PF02151 UvrB/uvrC motif CF65_02480 PF12344 Ultra-violet resistance protein B CF65_02480 PF17757 UvrB interaction domain CF65_02480 PF04851 Type III restriction enzyme, res subunit CF65_02481 PF03824 High-affinity nickel-transport protein CF65_02482 PF06226 Protein of unknown function (DUF1007) CF65_02484 PF12848 ABC transporter CF65_02484 PF00005 ABC transporter CF65_02485 PF03895 YadA-like membrane anchor domain CF65_02485 PF05658 Head domain of trimeric autotransporter adhesin CF65_02485 PF05662 Coiled stalk of trimeric autotransporter adhesin CF65_02486 PF01751 Toprim domain CF65_02486 PF00986 DNA gyrase B subunit, carboxyl terminus CF65_02486 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CF65_02486 PF00204 DNA gyrase B CF65_02491 PF03989 DNA gyrase C-terminal domain, beta-propeller CF65_02491 PF00521 DNA gyrase/topoisomerase IV, subunit A CF65_02492 PF00043 Glutathione S-transferase, C-terminal domain CF65_02492 PF02798 Glutathione S-transferase, N-terminal domain CF65_02493 PF08238 Sel1 repeat CF65_02494 PF14256 YwiC-like protein CF65_02495 PF01042 Endoribonuclease L-PSP CF65_02499 PF00535 Glycosyl transferase family 2 CF65_02500 PF03372 Endonuclease/Exonuclease/phosphatase family CF65_02501 PF12169 DNA polymerase III subunits gamma and tau domain III CF65_02501 PF12170 DNA polymerase III tau subunit V interacting with alpha CF65_02502 PF00156 Phosphoribosyl transferase domain CF65_02504 PF03279 Bacterial lipid A biosynthesis acyltransferase CF65_02506 PF01925 Sulfite exporter TauE/SafE CF65_02507 PF03411 Penicillin-insensitive murein endopeptidase CF65_02509 PF01264 Chorismate synthase CF65_02511 PF12794 Mechanosensitive ion channel inner membrane domain 1 CF65_02511 PF00924 Mechanosensitive ion channel CF65_02511 PF12795 Mechanosensitive ion channel porin domain CF65_02512 PF00501 AMP-binding enzyme CF65_02513 PF17206 SeqA protein N-terminal domain CF65_02513 PF03925 SeqA protein C-terminal domain CF65_02514 PF00561 alpha/beta hydrolase fold CF65_02515 PF00258 Flavodoxin CF65_02516 PF01475 Ferric uptake regulator family CF65_02519 PF00521 DNA gyrase/topoisomerase IV, subunit A CF65_02519 PF03989 DNA gyrase C-terminal domain, beta-propeller CF65_02521 PF04247 Invasion gene expression up-regulator, SirB CF65_02523 PF01253 Translation initiation factor SUI1 CF65_02524 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CF65_02525 PF18073 Rubredoxin metal binding domain CF65_02526 PF06305 Lipopolysaccharide assembly protein A domain CF65_02527 PF00216 Bacterial DNA-binding protein CF65_02528 PF00575 S1 RNA binding domain CF65_02529 PF02224 Cytidylate kinase CF65_02531 PF04393 Protein of unknown function (DUF535) CF65_02532 PF07715 TonB-dependent Receptor Plug Domain CF65_02533 PF00675 Insulinase (Peptidase family M16) CF65_02533 PF05193 Peptidase M16 inactive domain CF65_02534 PF05193 Peptidase M16 inactive domain CF65_02534 PF00675 Insulinase (Peptidase family M16) CF65_02536 PF05437 Branched-chain amino acid transport protein (AzlD) CF65_02538 PF03591 AzlC protein CF65_02539 PF03466 LysR substrate binding domain CF65_02539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CF65_02540 PF01717 Cobalamin-independent synthase, Catalytic domain CF65_02540 PF08267 Cobalamin-independent synthase, N-terminal domain CF65_02543 PF17761 DUF1016 N-terminal domain CF65_02543 PF06250 YhcG PDDEXK nuclease domain CF65_02544 PF18339 RapA N-terminal Tudor like domain 1 CF65_02544 PF18337 RapA N-terminal Tudor like domain CF65_02544 PF12137 RNA polymerase recycling family C-terminal CF65_02544 PF00176 SNF2 family N-terminal domain CF65_02544 PF00271 Helicase conserved C-terminal domain CF65_02547 PF01027 Inhibitor of apoptosis-promoting Bax1 CF65_02548 PF04358 DsrC like protein CF65_02549 PF01297 Zinc-uptake complex component A periplasmic CF65_02550 PF00005 ABC transporter CF65_02551 PF00950 ABC 3 transport family CF65_02552 PF00950 ABC 3 transport family CF65_02553 PF00708 Acylphosphatase CF65_02554 PF09829 Uncharacterized protein conserved in bacteria (DUF2057) CF65_02556 PF02142 MGS-like domain CF65_02558 PF03733 Inner membrane component domain CF65_02560 PF12805 FUSC-like inner membrane protein yccS CF65_02561 PF01713 Smr domain CF65_02562 PF05175 Methyltransferase small domain CF65_02563 PF02779 Transketolase, pyrimidine binding domain CF65_02563 PF02780 Transketolase, C-terminal domain CF65_02565 PF02780 Transketolase, C-terminal domain CF65_02565 PF00456 Transketolase, thiamine diphosphate binding domain CF65_02565 PF02779 Transketolase, pyrimidine binding domain CF65_02574 PF13286 Phosphohydrolase-associated domain CF65_02574 PF01966 HD domain CF65_02575 PF04172 LrgB-like family CF65_02576 PF03788 LrgA family CF65_02577 PF00565 Staphylococcal nuclease homologue CF65_02579 PF00266 Aminotransferase class-V CF65_02581 PF02657 Fe-S metabolism associated domain CF65_02584 PF00294 pfkB family carbohydrate kinase CF65_02584 PF01467 Cytidylyltransferase-like CF65_02586 PF03279 Bacterial lipid A biosynthesis acyltransferase CF65_02589 PF02525 Flavodoxin-like fold CF65_02591 PF16200 C-terminal region of band_7 CF65_02591 PF01145 SPFH domain / Band 7 family CF65_02593 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CF65_02593 PF03625 Domain of unknown function DUF302 CF65_02595 PF03150 Di-haem cytochrome c peroxidase CF65_02595 PF14376 Haem-binding domain CF65_02595 PF00034 Cytochrome c CF65_02597 PF00570 HRDC domain CF65_02597 PF01612 3'-5' exonuclease CF65_02598 PF13193 AMP-binding enzyme C-terminal domain CF65_02598 PF00501 AMP-binding enzyme CF65_02599 PF03843 Outer membrane lipoprotein Slp family CF65_02600 PF00814 Glycoprotease family CF65_02601 PF06733 DEAD_2 CF65_02601 PF13307 Helicase C-terminal domain CF65_02602 PF01263 Aldose 1-epimerase CF65_02604 PF07992 Pyridine nucleotide-disulphide oxidoreductase CF65_02606 PF00005 ABC transporter CF65_02606 PF00664 ABC transporter transmembrane region CF65_02609 PF00005 ABC transporter CF65_02609 PF00664 ABC transporter transmembrane region CF65_02610 PF02551 Acyl-CoA thioesterase CF65_02615 PF07273 Protein of unknown function (DUF1439) CF65_02616 PF00480 ROK family CF65_02618 PF01569 PAP2 superfamily CF65_02619 PF00925 GTP cyclohydrolase II CF65_02623 PF16363 GDP-mannose 4,6 dehydratase CF65_02626 PF05117 Family of unknown function (DUF695) CF65_02626 PF06877 Regulator of ribonuclease activity B CF65_02628 PF03372 Endonuclease/Exonuclease/phosphatase family CF65_02631 PF02397 Bacterial sugar transferase CF65_02632 PF00535 Glycosyl transferase family 2 CF65_02634 PF00535 Glycosyl transferase family 2 CF65_02636 PF00535 Glycosyl transferase family 2 CF65_02640 PF00535 Glycosyl transferase family 2 CF65_02642 PF00005 ABC transporter CF65_02643 PF01061 ABC-2 type transporter CF65_02644 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CF65_02645 PF04321 RmlD substrate binding domain CF65_02646 PF00483 Nucleotidyl transferase CF65_02647 PF16363 GDP-mannose 4,6 dehydratase CF65_02648 PF13406 Transglycosylase SLT domain CF65_02649 PF00535 Glycosyl transferase family 2 CF65_02651 PF00535 Glycosyl transferase family 2 CF65_02654 PF01755 Glycosyltransferase family 25 (LPS biosynthesis protein) CF65_02656 PF04230 Polysaccharide pyruvyl transferase CF65_02657 PF02604 Antitoxin Phd_YefM, type II toxin-antitoxin system CF65_02658 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system CF65_02659 PF02698 DUF218 domain CF65_02663 PF14743 DNA ligase OB-like domain CF65_02663 PF01068 ATP dependent DNA ligase domain CF65_02666 PF00580 UvrD/REP helicase N-terminal domain CF65_02666 PF13361 UvrD-like helicase C-terminal domain CF65_02668 PF02447 GntP family permease CF65_02671 PF01202 Shikimate kinase CF65_02673 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CF65_02673 PF00356 Bacterial regulatory proteins, lacI family CF65_02674 PF02634 FdhD/NarQ family CF65_02675 PF01568 Molydopterin dinucleotide binding domain CF65_02675 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_02675 PF00384 Molybdopterin oxidoreductase CF65_02676 PF00384 Molybdopterin oxidoreductase CF65_02676 PF01568 Molydopterin dinucleotide binding domain CF65_02676 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_02677 PF13247 4Fe-4S dicluster domain CF65_02677 PF09163 Formate dehydrogenase N, transmembrane CF65_02678 PF01292 Prokaryotic cytochrome b561 CF65_02679 PF01292 Prokaryotic cytochrome b561 CF65_02682 PF17788 HypF Kae1-like domain CF65_02682 PF07503 HypF finger CF65_02682 PF01300 Telomere recombination CF65_02682 PF00708 Acylphosphatase CF65_02683 PF12798 4Fe-4S binding domain CF65_02683 PF00037 4Fe-4S binding domain CF65_02684 PF00361 Proton-conducting membrane transporter CF65_02686 PF00146 NADH dehydrogenase CF65_02687 PF00361 Proton-conducting membrane transporter CF65_02687 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CF65_02688 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CF65_02689 PF00361 Proton-conducting membrane transporter CF65_02689 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CF65_02692 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CF65_02692 PF00374 Nickel-dependent hydrogenase CF65_02692 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CF65_02693 PF12838 4Fe-4S dicluster domain CF65_02695 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CF65_02696 PF07450 Formate hydrogenlyase maturation protein HycH CF65_02697 PF01750 Hydrogenase maturation protease CF65_02698 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_02698 PF00384 Molybdopterin oxidoreductase CF65_02698 PF01568 Molydopterin dinucleotide binding domain CF65_02699 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CF65_02699 PF00384 Molybdopterin oxidoreductase CF65_02699 PF01568 Molydopterin dinucleotide binding domain CF65_02700 PF00549 CoA-ligase CF65_02700 PF02629 CoA binding domain CF65_02702 PF08442 ATP-grasp domain CF65_02702 PF00549 CoA-ligase CF65_02704 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CF65_02704 PF00364 Biotin-requiring enzyme CF65_02704 PF02817 e3 binding domain CF65_02706 PF02779 Transketolase, pyrimidine binding domain CF65_02706 PF00676 Dehydrogenase E1 component CF65_02706 PF16078 2-oxoglutarate dehydrogenase N-terminus CF65_02706 PF16870 2-oxoglutarate dehydrogenase C-terminal CF65_02708 PF00753 Metallo-beta-lactamase superfamily CF65_02710 PF05951 Bacterial protein of unknown function (DUF882) CF65_02711 PF03734 L,D-transpeptidase catalytic domain CF65_02712 PF17804 Tail specific protease N-terminal domain CF65_02712 PF03572 Peptidase family S41 CF65_02712 PF00595 PDZ domain CF65_02712 PF11818 C-terminal domain of tail specific protease (DUF3340) CF65_02713 PF17516 ProQ C-terminal domain CF65_02713 PF04352 ProQ/FINO family CF65_02714 PF04403 Paraquat-inducible protein A CF65_02715 PF02470 MlaD protein CF65_02716 PF01546 Peptidase family M20/M25/M40 CF65_02716 PF07687 Peptidase dimerisation domain CF65_02718 PF08402 TOBE domain CF65_02718 PF00005 ABC transporter CF65_02719 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02720 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02721 PF13416 Bacterial extracellular solute-binding protein CF65_02722 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CF65_02722 PF08211 Cytidine and deoxycytidylate deaminase zinc-binding region CF65_02724 PF02403 Seryl-tRNA synthetase N-terminal domain CF65_02724 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CF65_02726 PF03605 Anaerobic c4-dicarboxylate membrane transporter CF65_02728 PF16193 AAA C-terminal domain CF65_02728 PF12002 MgsA AAA+ ATPase C terminal CF65_02728 PF00004 ATPase family associated with various cellular activities (AAA) CF65_02731 PF03548 Outer membrane lipoprotein carrier protein LolA CF65_02733 PF17854 FtsK alpha domain CF65_02733 PF01580 FtsK/SpoIIIE family CF65_02733 PF13491 4TM region of DNA translocase FtsK/SpoIIIE CF65_02733 PF09397 Ftsk gamma domain CF65_02734 PF01037 Lrp/AsnC ligand binding domain CF65_02735 PF18073 Rubredoxin metal binding domain CF65_02736 PF01928 CYTH domain CF65_02737 PF01865 Protein of unknown function DUF47 CF65_02738 PF01384 Phosphate transporter family CF65_02740 PF08239 Bacterial SH3 domain CF65_02742 PF01743 Poly A polymerase head domain CF65_02742 PF12627 Probable RNA and SrmB- binding site of polymerase A CF65_02742 PF01966 HD domain CF65_02743 PF03550 Outer membrane lipoprotein LolB CF65_02745 PF00288 GHMP kinases N terminal domain CF65_02745 PF08544 GHMP kinases C terminal CF65_02747 PF14572 Phosphoribosyl synthetase-associated domain CF65_02747 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CF65_02749 PF01070 FMN-dependent dehydrogenase CF65_02751 PF02652 L-lactate permease CF65_02754 PF04363 Protein of unknown function (DUF496) CF65_02756 PF00266 Aminotransferase class-V CF65_02757 PF00155 Aminotransferase class I and II CF65_02758 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CF65_02762 PF00075 RNase H CF65_02763 PF00929 Exonuclease CF65_02775 PF02547 Queuosine biosynthesis protein CF65_02776 PF00155 Aminotransferase class I and II CF65_02777 PF01702 Queuine tRNA-ribosyltransferase CF65_02779 PF02699 Preprotein translocase subunit CF65_02780 PF13721 SecD export protein N-terminal TM region CF65_02780 PF07549 SecD/SecF GG Motif CF65_02780 PF02355 Protein export membrane protein CF65_02781 PF02355 Protein export membrane protein CF65_02781 PF07549 SecD/SecF GG Motif CF65_02782 PF07715 TonB-dependent Receptor Plug Domain CF65_02782 PF00593 TonB dependent receptor CF65_02784 PF00465 Iron-containing alcohol dehydrogenase CF65_02784 PF00171 Aldehyde dehydrogenase family CF65_02785 PF02653 Branched-chain amino acid transport system / permease component CF65_02786 PF00005 ABC transporter CF65_02787 PF13407 Periplasmic binding protein domain CF65_02788 PF13407 Periplasmic binding protein domain CF65_02789 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CF65_02789 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF65_02790 PF00171 Aldehyde dehydrogenase family CF65_02792 PF07690 Major Facilitator Superfamily CF65_02793 PF00459 Inositol monophosphatase family CF65_02794 PF04962 KduI/IolB family CF65_02797 PF00294 pfkB family carbohydrate kinase CF65_02800 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CF65_02800 PF00205 Thiamine pyrophosphate enzyme, central domain CF65_02800 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CF65_02801 PF01261 Xylose isomerase-like TIM barrel CF65_02802 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CF65_02802 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CF65_02805 PF00664 ABC transporter transmembrane region CF65_02805 PF03412 Peptidase C39 family CF65_02805 PF00005 ABC transporter CF65_02806 PF08339 RTX C-terminal domain CF65_02806 PF02382 N-terminal domain in RTX protein CF65_02806 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) CF65_02807 PF02794 RTX toxin acyltransferase family CF65_02810 PF00464 Serine hydroxymethyltransferase CF65_02818 PF05175 Methyltransferase small domain CF65_02818 PF08468 Methyltransferase small domain N-terminal CF65_02819 PF03603 DNA polymerase III psi subunit CF65_02821 PF00583 Acetyltransferase (GNAT) family CF65_02823 PF17946 RecC C-terminal domain CF65_02824 PF17344 Family of unknown function (DUF5374) CF65_02827 PF07963 Prokaryotic N-terminal methylation motif CF65_02829 PF00691 OmpA family CF65_02830 PF04052 TolB amino-terminal domain CF65_02830 PF07676 WD40-like Beta Propeller Repeat CF65_02832 PF06519 TolA C-terminal CF65_02834 PF02472 Biopolymer transport protein ExbD/TolR CF65_02836 PF01618 MotA/TolQ/ExbB proton channel family CF65_02837 PF03061 Thioesterase superfamily CF65_02840 PF02322 Cytochrome bd terminal oxidase subunit II CF65_02841 PF01654 Cytochrome bd terminal oxidase subunit I CF65_02842 PF17274 Family of unknown function (DUF5339) CF65_02844 PF05496 Holliday junction DNA helicase RuvB P-loop domain CF65_02844 PF05491 RuvB C-terminal winged helix domain CF65_02844 PF17864 RuvB AAA lid domain CF65_02845 PF07499 RuvA, C-terminal domain CF65_02845 PF01330 RuvA N terminal domain CF65_02846 PF02075 Crossover junction endodeoxyribonuclease RuvC CF65_02848 PF01709 Transcriptional regulator CF65_02850 PF00293 NUDIX domain CF65_02856 PF00152 tRNA synthetases class II (D, K and N) CF65_02856 PF02938 GAD domain CF65_02856 PF01336 OB-fold nucleic acid binding domain CF65_02857 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CF65_02858 PF13649 Methyltransferase domain CF65_02864 PF07690 Major Facilitator Superfamily CF65_02865 PF07715 TonB-dependent Receptor Plug Domain CF65_02865 PF00593 TonB dependent receptor CF65_02866 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CF65_02867 PF00929 Exonuclease CF65_02870 PF03553 Na+/H+ antiporter family CF65_02870 PF13726 Na+-H+ antiporter family CF65_02873 PF00919 Uncharacterized protein family UPF0004 CF65_02873 PF01938 TRAM domain CF65_02873 PF04055 Radical SAM superfamily CF65_02875 PF01494 FAD binding domain CF65_02878 PF02677 Epoxyqueuosine reductase QueH CF65_02879 PF00348 Polyprenyl synthetase CF65_02880 PF00829 Ribosomal prokaryotic L21 protein CF65_02881 PF01016 Ribosomal L27 protein CF65_02883 PF00892 EamA-like transporter family CF65_02885 PF00892 EamA-like transporter family CF65_02886 PF01018 GTP1/OBG CF65_02886 PF01926 50S ribosome-binding GTPase CF65_02888 PF01668 SmpB protein CF65_02891 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF65_02892 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CF65_02893 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02895 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02897 PF12911 N-terminal TM domain of oligopeptide transport permease C CF65_02897 PF00528 Binding-protein-dependent transport system inner membrane component CF65_02898 PF00005 ABC transporter CF65_02898 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF65_02899 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CF65_02899 PF00005 ABC transporter CF65_02902 PF00486 Transcriptional regulatory protein, C terminal CF65_02902 PF00072 Response regulator receiver domain CF65_02903 PF00444 Ribosomal protein L36 CF65_02904 PF01197 Ribosomal protein L31 CF65_02905 PF03641 Possible lysine decarboxylase CF65_02907 PF11412 Disulphide bond corrector protein DsbC CF65_02907 PF02683 Cytochrome C biogenesis protein transmembrane region CF65_02907 PF00085 Thioredoxin CF65_02909 PF07681 DoxX CF65_02910 PF12111 Polyribonucleotide phosphorylase C terminal CF65_02910 PF10150 Ribonuclease E/G family CF65_02910 PF00575 S1 RNA binding domain CF65_02913 PF00849 RNA pseudouridylate synthase CF65_02913 PF01479 S4 domain CF65_02915 PF00085 Thioredoxin CF65_02916 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CF65_02916 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CF65_02917 PF01053 Cys/Met metabolism PLP-dependent enzyme CF65_02919 PF03135 CagE, TrbE, VirB family, component of type IV transporter system CF65_02921 PF02661 Fic/DOC family CF65_02922 PF00171 Aldehyde dehydrogenase family CF65_02925 PF03458 UPF0126 domain CF65_02930 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain CF65_02931 PF08245 Mur ligase middle domain CF65_02931 PF01225 Mur ligase family, catalytic domain CF65_02931 PF02875 Mur ligase family, glutamate ligase domain CF65_02932 PF06725 3D domain CF65_02932 PF03562 MltA specific insert domain CF65_02933 PF00899 ThiF family CF65_02935 PF01297 Zinc-uptake complex component A periplasmic CF65_02936 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CF65_02937 PF04461 Protein of unknown function (DUF520) CF65_02939 PF18429 Domain of unknown function (DUF5609) CF65_02940 PF10144 Bacterial virulence factor haemolysin CF65_02944 PF01649 Ribosomal protein S20 CF65_02946 PF03023 Lipid II flippase MurJ CF65_02947 PF01687 Riboflavin kinase CF65_02947 PF06574 FAD synthetase CF65_02950 PF08264 Anticodon-binding domain of tRNA CF65_02950 PF00133 tRNA synthetases class I (I, L, M and V) CF65_02950 PF06827 Zinc finger found in FPG and IleRS CF65_02952 PF01252 Signal peptidase (SPase) II CF65_02954 PF02401 LytB protein CF65_02955 PF05697 Bacterial trigger factor protein (TF) CF65_02955 PF05698 Bacterial trigger factor protein (TF) C-terminus CF65_02955 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CF65_02956 PF02899 Phage integrase, N-terminal SAM-like domain CF65_02956 PF00589 Phage integrase family CF65_02958 PF12832 MFS_1 like family CF65_02959 PF14748 Pyrroline-5-carboxylate reductase dimerisation CF65_02959 PF03807 NADP oxidoreductase coenzyme F420-dependent CF65_02961 PF14748 Pyrroline-5-carboxylate reductase dimerisation CF65_02961 PF03807 NADP oxidoreductase coenzyme F420-dependent CF65_02962 PF04381 Putative exonuclease, RdgC CF65_02964 PF08525 Opacity-associated protein A N-terminal motif CF65_02964 PF04225 Opacity-associated protein A LysM-like domain CF65_02966 PF04055 Radical SAM superfamily CF65_02967 PF09285 Elongation factor P, C-terminal CF65_02967 PF08207 Elongation factor P (EF-P) KOW-like domain CF65_02967 PF01132 Elongation factor P (EF-P) OB domain CF65_02969 PF01212 Beta-eliminating lyase CF65_02970 PF01212 Beta-eliminating lyase CF65_02972 PF01212 Beta-eliminating lyase CF65_02973 PF03222 Tryptophan/tyrosine permease family CF65_02974 PF08348 YheO-like PAS domain CF65_02974 PF13309 HTH domain CF65_02975 PF10063 Uncharacterized integral membrane protein (DUF2301) CF65_02976 PF00149 Calcineurin-like phosphoesterase CF65_02977 PF01553 Acyltransferase CF65_02978 PF07732 Multicopper oxidase CF65_02980 PF00892 EamA-like transporter family CF65_02982 PF04055 Radical SAM superfamily CF65_02983 PF01228 Glycine radical CF65_02983 PF02901 Pyruvate formate lyase-like CF65_02984 PF01226 Formate/nitrite transporter CF65_02987 PF01230 HIT domain CF65_02990 PF00933 Glycosyl hydrolase family 3 N terminal domain CF65_02992 PF05958 tRNA (Uracil-5-)-methyltransferase CF65_02993 PF00365 Phosphofructokinase CF65_02996 PF01545 Cation efflux family CF65_02996 PF16916 Dimerisation domain of Zinc Transporter CF65_02999 PF03883 Peroxide stress protein YaaA CF65_03000 PF03167 Uracil DNA glycosylase superfamily CF65_03001 PF01228 Glycine radical CF65_03003 PF03144 Elongation factor Tu domain 2 CF65_03003 PF00679 Elongation factor G C-terminus CF65_03003 PF00009 Elongation factor Tu GTP binding domain CF65_03003 PF06421 GTP-binding protein LepA C-terminus CF65_03004 PF10502 Signal peptidase, peptidase S26 CF65_03006 PF14622 Ribonuclease-III-like CF65_03006 PF00035 Double-stranded RNA binding motif CF65_03008 PF01926 50S ribosome-binding GTPase CF65_03008 PF07650 KH domain CF65_03010 PF01926 50S ribosome-binding GTPase CF65_03010 PF10396 GTP-binding protein TrmE N-terminus CF65_03010 PF12631 MnmE helical domain CF65_03011 PF02096 60Kd inner membrane protein CF65_03011 PF14849 YidC periplasmic domain CF65_03013 PF00825 Ribonuclease P CF65_03014 PF00468 Ribosomal protein L34