locus-tag class description AGREI_0001 PF08299 Bacterial dnaA protein helix-turn-helix AGREI_0001 PF00308 Bacterial dnaA protein AGREI_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain AGREI_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain AGREI_0002 PF02767 DNA polymerase III beta subunit, central domain AGREI_0003 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AGREI_0003 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AGREI_0004 PF02463 RecF/RecN/SMC N terminal domain AGREI_0005 PF05258 Dna[CI] antecedent, DciA AGREI_0006 PF01751 Toprim domain AGREI_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0006 PF00204 DNA gyrase B AGREI_0006 PF00986 DNA gyrase B subunit, carboxyl terminus AGREI_0007 PF03989 DNA gyrase C-terminal domain, beta-propeller AGREI_0007 PF00521 DNA gyrase/topoisomerase IV, subunit A AGREI_0008 PF12089 Transmembrane domain of unknown function (DUF3566) AGREI_0011 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AGREI_0012 PF01694 Rhomboid family AGREI_0013 PF06781 Cell division protein CrgA AGREI_0014 PF04203 Sortase domain AGREI_0016 PF00117 Glutamine amidotransferase class-I AGREI_0017 PF03793 PASTA domain AGREI_0017 PF00069 Protein kinase domain AGREI_0018 PF00069 Protein kinase domain AGREI_0019 PF00905 Penicillin binding protein transpeptidase domain AGREI_0020 PF01098 Cell cycle protein AGREI_0022 PF16697 Inner membrane component of T3SS, cytoplasmic domain AGREI_0027 PF02540 NAD synthase AGREI_0028 PF01906 Putative heavy-metal-binding AGREI_0031 PF13419 Haloacid dehalogenase-like hydrolase AGREI_0032 PF02040 Arsenical pump membrane protein AGREI_0037 PF02423 Ornithine cyclodeaminase/mu-crystallin family AGREI_0039 PF00083 Sugar (and other) transporter AGREI_0041 PF01209 ubiE/COQ5 methyltransferase family AGREI_0044 PF01939 Endonuclease NucS AGREI_0045 PF07690 Major Facilitator Superfamily AGREI_0046 PF00356 Bacterial regulatory proteins, lacI family AGREI_0054 PF00535 Glycosyl transferase family 2 AGREI_0055 PF01370 NAD dependent epimerase/dehydratase family AGREI_0056 PF01554 MatE AGREI_0057 PF05649 Peptidase family M13 AGREI_0057 PF01431 Peptidase family M13 AGREI_0058 PF00356 Bacterial regulatory proteins, lacI family AGREI_0060 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0061 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0067 PF00781 Diacylglycerol kinase catalytic domain AGREI_0068 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_0068 PF03466 LysR substrate binding domain AGREI_0074 PF00069 Protein kinase domain AGREI_0078 PF01488 Shikimate / quinate 5-dehydrogenase AGREI_0078 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AGREI_0078 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AGREI_0079 PF01208 Uroporphyrinogen decarboxylase (URO-D) AGREI_0080 PF01593 Flavin containing amine oxidoreductase AGREI_0081 PF13673 Acetyltransferase (GNAT) domain AGREI_0086 PF06778 Chlorite dismutase AGREI_0087 PF00762 Ferrochelatase AGREI_0088 PF03900 Porphobilinogen deaminase, C-terminal domain AGREI_0088 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AGREI_0090 PF00490 Delta-aminolevulinic acid dehydratase AGREI_0091 PF00202 Aminotransferase class-III AGREI_0092 PF03780 Asp23 family, cell envelope-related function AGREI_0093 PF08281 Sigma-70, region 4 AGREI_0093 PF04542 Sigma-70 region 2 AGREI_0097 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AGREI_0100 PF00005 ABC transporter AGREI_0105 PF12368 Rhodanase C-terminal AGREI_0105 PF00581 Rhodanese-like domain AGREI_0105 PF17773 UPF0176 acylphosphatase like domain AGREI_0106 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_0107 PF00132 Bacterial transferase hexapeptide (six repeats) AGREI_0108 PF05448 Acetyl xylan esterase (AXE1) AGREI_0109 PF00459 Inositol monophosphatase family AGREI_0110 PF00005 ABC transporter AGREI_0110 PF08402 TOBE domain AGREI_0111 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0114 PF00356 Bacterial regulatory proteins, lacI family AGREI_0115 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0116 PF00571 CBS domain AGREI_0116 PF00005 ABC transporter AGREI_0117 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0120 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AGREI_0122 PF13193 AMP-binding enzyme C-terminal domain AGREI_0122 PF00501 AMP-binding enzyme AGREI_0123 PF00378 Enoyl-CoA hydratase/isomerase AGREI_0126 PF02028 BCCT, betaine/carnitine/choline family transporter AGREI_0128 PF01022 Bacterial regulatory protein, arsR family AGREI_0129 PF06722 Protein of unknown function (DUF1205) AGREI_0131 PF12695 Alpha/beta hydrolase family AGREI_0132 PF00723 Glycosyl hydrolases family 15 AGREI_0136 PF00083 Sugar (and other) transporter AGREI_0137 PF00923 Transaldolase/Fructose-6-phosphate aldolase AGREI_0141 PF00171 Aldehyde dehydrogenase family AGREI_0142 PF04962 KduI/IolB family AGREI_0143 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AGREI_0143 PF00205 Thiamine pyrophosphate enzyme, central domain AGREI_0143 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AGREI_0145 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0145 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0146 PF01261 Xylose isomerase-like TIM barrel AGREI_0147 PF14552 Tautomerase enzyme AGREI_0148 PF00392 Bacterial regulatory proteins, gntR family AGREI_0148 PF07702 UTRA domain AGREI_0149 PF03061 Thioesterase superfamily AGREI_0150 PF00106 short chain dehydrogenase AGREI_0155 PF00999 Sodium/hydrogen exchanger family AGREI_0157 PF09335 SNARE associated Golgi protein AGREI_0159 PF02810 SEC-C motif AGREI_0161 PF01384 Phosphate transporter family AGREI_0182 PF00196 Bacterial regulatory proteins, luxR family AGREI_0182 PF00072 Response regulator receiver domain AGREI_0183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0183 PF07730 Histidine kinase AGREI_0185 PF00005 ABC transporter AGREI_0190 PF01757 Acyltransferase family AGREI_0191 PF00171 Aldehyde dehydrogenase family AGREI_0192 PF13195 Protein of unknown function (DUF4011) AGREI_0192 PF13087 AAA domain AGREI_0192 PF13086 AAA domain AGREI_0192 PF13195 Protein of unknown function (DUF4011) AGREI_0192 PF13087 AAA domain AGREI_0192 PF13086 AAA domain AGREI_0193 PF16884 N-terminal domain of oxidoreductase AGREI_0193 PF00107 Zinc-binding dehydrogenase AGREI_0194 PF13411 MerR HTH family regulatory protein AGREI_0195 PF00916 Sulfate permease family AGREI_0195 PF01740 STAS domain AGREI_0202 PF16859 Tetracyclin repressor-like, C-terminal domain AGREI_0202 PF00440 Bacterial regulatory proteins, tetR family AGREI_0203 PF00106 short chain dehydrogenase AGREI_0207 PF00356 Bacterial regulatory proteins, lacI family AGREI_0209 PF00459 Inositol monophosphatase family AGREI_0210 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0211 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0212 PF13416 Bacterial extracellular solute-binding protein AGREI_0213 PF00756 Putative esterase AGREI_0217 PF05661 Protein of unknown function (DUF808) AGREI_0218 PF03976 Polyphosphate kinase 2 (PPK2) AGREI_0219 PF00392 Bacterial regulatory proteins, gntR family AGREI_0220 PF04607 Region found in RelA / SpoT proteins AGREI_0223 PF00202 Aminotransferase class-III AGREI_0228 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0228 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0232 PF01161 Phosphatidylethanolamine-binding protein AGREI_0235 PF07690 Major Facilitator Superfamily AGREI_0236 PF16884 N-terminal domain of oxidoreductase AGREI_0236 PF00107 Zinc-binding dehydrogenase AGREI_0238 PF01565 FAD binding domain AGREI_0238 PF04030 D-arabinono-1,4-lactone oxidase AGREI_0239 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0239 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0241 PF01022 Bacterial regulatory protein, arsR family AGREI_0245 PF00444 Ribosomal protein L36 AGREI_0246 PF07730 Histidine kinase AGREI_0247 PF00072 Response regulator receiver domain AGREI_0247 PF00196 Bacterial regulatory proteins, luxR family AGREI_0250 PF04174 A circularly permuted ATPgrasp AGREI_0252 PF01841 Transglutaminase-like superfamily AGREI_0252 PF08379 Bacterial transglutaminase-like N-terminal region AGREI_0254 PF03099 Biotin/lipoate A/B protein ligase family AGREI_0254 PF10437 Bacterial lipoate protein ligase C-terminus AGREI_0256 PF01555 DNA methylase AGREI_0257 PF07690 Major Facilitator Superfamily AGREI_0258 PF16859 Tetracyclin repressor-like, C-terminal domain AGREI_0258 PF00440 Bacterial regulatory proteins, tetR family AGREI_0259 PF00356 Bacterial regulatory proteins, lacI family AGREI_0260 PF00232 Glycosyl hydrolase family 1 AGREI_0261 PF07690 Major Facilitator Superfamily AGREI_0263 PF02557 D-alanyl-D-alanine carboxypeptidase AGREI_0266 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AGREI_0266 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AGREI_0266 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AGREI_0266 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AGREI_0267 PF00800 Prephenate dehydratase AGREI_0269 PF00781 Diacylglycerol kinase catalytic domain AGREI_0270 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AGREI_0270 PF02403 Seryl-tRNA synthetase N-terminal domain AGREI_0275 PF08031 Berberine and berberine like AGREI_0275 PF01565 FAD binding domain AGREI_0276 PF00480 ROK family AGREI_0279 PF13407 Periplasmic binding protein domain AGREI_0280 PF02653 Branched-chain amino acid transport system / permease component AGREI_0281 PF00005 ABC transporter AGREI_0282 PF01261 Xylose isomerase-like TIM barrel AGREI_0283 PF01261 Xylose isomerase-like TIM barrel AGREI_0289 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AGREI_0290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0291 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0291 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0293 PF00480 ROK family AGREI_0296 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0297 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0310 PF00875 DNA photolyase AGREI_0310 PF03441 FAD binding domain of DNA photolyase AGREI_0318 PF00356 Bacterial regulatory proteins, lacI family AGREI_0321 PF01032 FecCD transport family AGREI_0322 PF01032 FecCD transport family AGREI_0323 PF01497 Periplasmic binding protein AGREI_0325 PF14403 Circularly permuted ATP-grasp type 2 AGREI_0325 PF04107 Glutamate-cysteine ligase family 2(GCS2) AGREI_0326 PF00486 Transcriptional regulatory protein, C terminal AGREI_0328 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AGREI_0330 PF03807 NADP oxidoreductase coenzyme F420-dependent AGREI_0330 PF14748 Pyrroline-5-carboxylate reductase dimerisation AGREI_0333 PF02254 TrkA-N domain AGREI_0333 PF02080 TrkA-C domain AGREI_0334 PF02386 Cation transport protein AGREI_0335 PF01022 Bacterial regulatory protein, arsR family AGREI_0336 PF12728 Helix-turn-helix domain AGREI_0337 PF00202 Aminotransferase class-III AGREI_0343 PF13302 Acetyltransferase (GNAT) domain AGREI_0347 PF00578 AhpC/TSA family AGREI_0348 PF02683 Cytochrome C biogenesis protein transmembrane region AGREI_0352 PF00561 alpha/beta hydrolase fold AGREI_0359 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0360 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0361 PF12849 PBP superfamily domain AGREI_0363 PF00005 ABC transporter AGREI_0366 PF03793 PASTA domain AGREI_0366 PF00069 Protein kinase domain AGREI_0369 PF01578 Cytochrome C assembly protein AGREI_0370 PF18374 Enolase N-terminal domain-like AGREI_0370 PF13378 Enolase C-terminal domain-like AGREI_0371 PF00075 RNase H AGREI_0372 PF00378 Enoyl-CoA hydratase/isomerase AGREI_0373 PF01047 MarR family AGREI_0374 PF02566 OsmC-like protein AGREI_0375 PF00501 AMP-binding enzyme AGREI_0375 PF13193 AMP-binding enzyme C-terminal domain AGREI_0376 PF01040 UbiA prenyltransferase family AGREI_0382 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AGREI_0384 PF03707 Bacterial signalling protein N terminal repeat AGREI_0384 PF00990 Diguanylate cyclase, GGDEF domain AGREI_0384 PF00563 EAL domain AGREI_0385 PF12697 Alpha/beta hydrolase family AGREI_0386 PF03976 Polyphosphate kinase 2 (PPK2) AGREI_0388 PF00425 chorismate binding enzyme AGREI_0389 PF01209 ubiE/COQ5 methyltransferase family AGREI_0390 PF00348 Polyprenyl synthetase AGREI_0391 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_0393 PF01032 FecCD transport family AGREI_0394 PF01032 FecCD transport family AGREI_0395 PF00005 ABC transporter AGREI_0398 PF00293 NUDIX domain AGREI_0399 PF04461 Protein of unknown function (DUF520) AGREI_0402 PF00459 Inositol monophosphatase family AGREI_0403 PF01551 Peptidase family M23 AGREI_0403 PF10145 Phage-related minor tail protein AGREI_0403 PF01464 Transglycosylase SLT domain AGREI_0404 PF00128 Alpha amylase, catalytic domain AGREI_0405 PF00512 His Kinase A (phospho-acceptor) domain AGREI_0405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0405 PF00672 HAMP domain AGREI_0406 PF00486 Transcriptional regulatory protein, C terminal AGREI_0406 PF00072 Response regulator receiver domain AGREI_0408 PF01066 CDP-alcohol phosphatidyltransferase AGREI_0409 PF00588 SpoU rRNA Methylase family AGREI_0410 PF13452 N-terminal half of MaoC dehydratase AGREI_0412 PF01565 FAD binding domain AGREI_0412 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AGREI_0417 PF07690 Major Facilitator Superfamily AGREI_0420 PF00561 alpha/beta hydrolase fold AGREI_0420 PF00106 short chain dehydrogenase AGREI_0425 PF02559 CarD-like/TRCF domain AGREI_0432 PF01546 Peptidase family M20/M25/M40 AGREI_0432 PF07687 Peptidase dimerisation domain AGREI_0436 PF00440 Bacterial regulatory proteins, tetR family AGREI_0437 PF03756 A-factor biosynthesis hotdog domain AGREI_0439 PF01636 Phosphotransferase enzyme family AGREI_0448 PF02441 Flavoprotein AGREI_0451 PF00005 ABC transporter AGREI_0459 PF04229 GrpB protein AGREI_0462 PF02909 Tetracyclin repressor-like, C-terminal domain AGREI_0462 PF00440 Bacterial regulatory proteins, tetR family AGREI_0469 PF00106 short chain dehydrogenase AGREI_0470 PF00356 Bacterial regulatory proteins, lacI family AGREI_0471 PF08532 Beta-galactosidase trimerisation domain AGREI_0471 PF08533 Beta-galactosidase C-terminal domain AGREI_0471 PF02449 Beta-galactosidase AGREI_0473 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0474 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0478 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AGREI_0478 PF00128 Alpha amylase, catalytic domain AGREI_0480 PF04616 Glycosyl hydrolases family 43 AGREI_0480 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AGREI_0481 PF00356 Bacterial regulatory proteins, lacI family AGREI_0482 PF01547 Bacterial extracellular solute-binding protein AGREI_0483 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0484 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0485 PF14310 Fibronectin type III-like domain AGREI_0485 PF00933 Glycosyl hydrolase family 3 N terminal domain AGREI_0485 PF01915 Glycosyl hydrolase family 3 C-terminal domain AGREI_0497 PF08453 Peptidase family M9 N-terminal AGREI_0497 PF01752 Collagenase AGREI_0497 PF18496 Collagenase G catalytic helper subdomain AGREI_0500 PF02706 Chain length determinant protein AGREI_0500 PF13807 G-rich domain on putative tyrosine kinase AGREI_0500 PF13614 AAA domain AGREI_0501 PF13439 Glycosyltransferase Family 4 AGREI_0501 PF00534 Glycosyl transferases group 1 AGREI_0504 PF13229 Right handed beta helix region AGREI_0507 PF02397 Bacterial sugar transferase AGREI_0512 PF13472 GDSL-like Lipase/Acylhydrolase family AGREI_0513 PF00756 Putative esterase AGREI_0514 PF09924 Uncharacterised conserved protein (DUF2156) AGREI_0516 PF01547 Bacterial extracellular solute-binding protein AGREI_0523 PF07859 alpha/beta hydrolase fold AGREI_0535 PF01757 Acyltransferase family AGREI_0537 PF13614 AAA domain AGREI_0538 PF01451 Low molecular weight phosphotyrosine protein phosphatase AGREI_0539 PF02397 Bacterial sugar transferase AGREI_0540 PF16363 GDP-mannose 4,6 dehydratase AGREI_0541 PF16363 GDP-mannose 4,6 dehydratase AGREI_0544 PF13439 Glycosyltransferase Family 4 AGREI_0544 PF00534 Glycosyl transferases group 1 AGREI_0545 PF00534 Glycosyl transferases group 1 AGREI_0545 PF13439 Glycosyltransferase Family 4 AGREI_0546 PF13439 Glycosyltransferase Family 4 AGREI_0546 PF00534 Glycosyl transferases group 1 AGREI_0552 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AGREI_0552 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AGREI_0552 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AGREI_0553 PF01047 MarR family AGREI_0555 PF03816 Cell envelope-related transcriptional attenuator domain AGREI_0559 PF02397 Bacterial sugar transferase AGREI_0560 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AGREI_0563 PF00356 Bacterial regulatory proteins, lacI family AGREI_0565 PF13407 Periplasmic binding protein domain AGREI_0566 PF00005 ABC transporter AGREI_0567 PF02653 Branched-chain amino acid transport system / permease component AGREI_0568 PF00005 ABC transporter AGREI_0570 PF00300 Histidine phosphatase superfamily (branch 1) AGREI_0574 PF00155 Aminotransferase class I and II AGREI_0575 PF00781 Diacylglycerol kinase catalytic domain AGREI_0578 PF13419 Haloacid dehalogenase-like hydrolase AGREI_0579 PF16363 GDP-mannose 4,6 dehydratase AGREI_0580 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AGREI_0581 PF02357 Transcription termination factor nusG AGREI_0582 PF03946 Ribosomal protein L11, N-terminal domain AGREI_0582 PF00298 Ribosomal protein L11, RNA binding domain AGREI_0583 PF00687 Ribosomal protein L1p/L10e family AGREI_0584 PF00583 Acetyltransferase (GNAT) family AGREI_0585 PF07690 Major Facilitator Superfamily AGREI_0586 PF17938 Tetracyclin repressor-like, C-terminal domain AGREI_0586 PF00440 Bacterial regulatory proteins, tetR family AGREI_0589 PF00557 Metallopeptidase family M24 AGREI_0590 PF00575 S1 RNA binding domain AGREI_0590 PF00773 RNB domain AGREI_0590 PF08206 Ribonuclease B OB domain AGREI_0590 PF17876 Cold shock domain AGREI_0591 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_0591 PF00550 Phosphopantetheine attachment site AGREI_0591 PF00698 Acyl transferase domain AGREI_0591 PF08659 KR domain AGREI_0591 PF14765 Polyketide synthase dehydratase AGREI_0595 PF00005 ABC transporter AGREI_0598 PF00072 Response regulator receiver domain AGREI_0598 PF00486 Transcriptional regulatory protein, C terminal AGREI_0599 PF00672 HAMP domain AGREI_0599 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0599 PF00512 His Kinase A (phospho-acceptor) domain AGREI_0600 PF00375 Sodium:dicarboxylate symporter family AGREI_0601 PF07676 WD40-like Beta Propeller Repeat AGREI_0603 PF00466 Ribosomal protein L10 AGREI_0604 PF16320 Ribosomal protein L7/L12 dimerisation domain AGREI_0604 PF00542 Ribosomal protein L7/L12 C-terminal domain AGREI_0606 PF00356 Bacterial regulatory proteins, lacI family AGREI_0608 PF01547 Bacterial extracellular solute-binding protein AGREI_0610 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0611 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0612 PF00005 ABC transporter AGREI_0612 PF00664 ABC transporter transmembrane region AGREI_0613 PF00571 CBS domain AGREI_0613 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_0614 PF01053 Cys/Met metabolism PLP-dependent enzyme AGREI_0616 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AGREI_0616 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AGREI_0618 PF07676 WD40-like Beta Propeller Repeat AGREI_0618 PF00326 Prolyl oligopeptidase family AGREI_0622 PF07972 NrdI Flavodoxin like AGREI_0623 PF08343 Ribonucleotide reductase N-terminal AGREI_0623 PF00317 Ribonucleotide reductase, all-alpha domain AGREI_0623 PF02867 Ribonucleotide reductase, barrel domain AGREI_0624 PF00268 Ribonucleotide reductase, small chain AGREI_0625 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_0625 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_0627 PF07690 Major Facilitator Superfamily AGREI_0628 PF01638 HxlR-like helix-turn-helix AGREI_0629 PF05368 NmrA-like family AGREI_0630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AGREI_0630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AGREI_0631 PF00501 AMP-binding enzyme AGREI_0632 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AGREI_0633 PF00934 PE family AGREI_0633 PF00300 Histidine phosphatase superfamily (branch 1) AGREI_0634 PF00144 Beta-lactamase AGREI_0635 PF03180 NLPA lipoprotein AGREI_0636 PF09383 NIL domain AGREI_0636 PF00005 ABC transporter AGREI_0637 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0639 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0640 PF00005 ABC transporter AGREI_0641 PF00497 Bacterial extracellular solute-binding proteins, family 3 AGREI_0642 PF01266 FAD dependent oxidoreductase AGREI_0643 PF00296 Luciferase-like monooxygenase AGREI_0644 PF00296 Luciferase-like monooxygenase AGREI_0646 PF00296 Luciferase-like monooxygenase AGREI_0647 PF00155 Aminotransferase class I and II AGREI_0648 PF01053 Cys/Met metabolism PLP-dependent enzyme AGREI_0652 PF00356 Bacterial regulatory proteins, lacI family AGREI_0653 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AGREI_0653 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AGREI_0654 PF00596 Class II Aldolase and Adducin N-terminal domain AGREI_0655 PF02610 L-arabinose isomerase AGREI_0655 PF11762 L-arabinose isomerase C-terminal domain AGREI_0658 PF00480 ROK family AGREI_0658 PF01047 MarR family AGREI_0659 PF00005 ABC transporter AGREI_0660 PF02653 Branched-chain amino acid transport system / permease component AGREI_0661 PF13407 Periplasmic binding protein domain AGREI_0662 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AGREI_0662 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AGREI_0663 PF01261 Xylose isomerase-like TIM barrel AGREI_0665 PF13407 Periplasmic binding protein domain AGREI_0666 PF00005 ABC transporter AGREI_0667 PF02653 Branched-chain amino acid transport system / permease component AGREI_0668 PF00480 ROK family AGREI_0668 PF01325 Iron dependent repressor, N-terminal DNA binding domain AGREI_0669 PF00480 ROK family AGREI_0670 PF07690 Major Facilitator Superfamily AGREI_0672 PF00356 Bacterial regulatory proteins, lacI family AGREI_0675 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_0676 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AGREI_0678 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AGREI_0678 PF13378 Enolase C-terminal domain-like AGREI_0679 PF05872 Bacterial protein of unknown function (DUF853) AGREI_0682 PF00248 Aldo/keto reductase family AGREI_0683 PF03793 PASTA domain AGREI_0683 PF00069 Protein kinase domain AGREI_0687 PF12697 Alpha/beta hydrolase family AGREI_0690 PF00303 Thymidylate synthase AGREI_0691 PF00186 Dihydrofolate reductase AGREI_0693 PF01594 AI-2E family transporter AGREI_0694 PF02659 Putative manganese efflux pump AGREI_0696 PF00106 short chain dehydrogenase AGREI_0703 PF01641 SelR domain AGREI_0704 PF01625 Peptide methionine sulfoxide reductase AGREI_0709 PF13460 NAD(P)H-binding AGREI_0714 PF07085 DRTGG domain AGREI_0714 PF01515 Phosphate acetyl/butaryl transferase AGREI_0715 PF00871 Acetokinase family AGREI_0716 PF00196 Bacterial regulatory proteins, luxR family AGREI_0718 PF00583 Acetyltransferase (GNAT) family AGREI_0719 PF12169 DNA polymerase III subunits gamma and tau domain III AGREI_0720 PF02132 RecR protein AGREI_0720 PF13662 Toprim domain AGREI_0722 PF13840 ACT domain AGREI_0722 PF00696 Amino acid kinase family AGREI_0722 PF01842 ACT domain AGREI_0723 PF02774 Semialdehyde dehydrogenase, dimerisation domain AGREI_0723 PF01118 Semialdehyde dehydrogenase, NAD binding domain AGREI_0729 PF06039 Malate:quinone oxidoreductase (Mqo) AGREI_0730 PF03707 Bacterial signalling protein N terminal repeat AGREI_0730 PF00990 Diguanylate cyclase, GGDEF domain AGREI_0730 PF00563 EAL domain AGREI_0735 PF04055 Radical SAM superfamily AGREI_0736 PF00265 Thymidine kinase AGREI_0739 PF00912 Transglycosylase AGREI_0739 PF00905 Penicillin binding protein transpeptidase domain AGREI_0742 PF16177 Acetyl-coenzyme A synthetase N-terminus AGREI_0742 PF00501 AMP-binding enzyme AGREI_0742 PF13193 AMP-binding enzyme C-terminal domain AGREI_0743 PF00437 Type II/IV secretion system protein AGREI_0750 PF01131 DNA topoisomerase AGREI_0750 PF01751 Toprim domain AGREI_0750 PF13368 Topoisomerase C-terminal repeat AGREI_0751 PF02223 Thymidylate kinase AGREI_0752 PF09115 DNA polymerase III, delta subunit, C terminal AGREI_0753 PF00561 alpha/beta hydrolase fold AGREI_0755 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_0755 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_0756 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AGREI_0757 PF00857 Isochorismatase family AGREI_0758 PF03176 MMPL family AGREI_0759 PF00171 Aldehyde dehydrogenase family AGREI_0760 PF00664 ABC transporter transmembrane region AGREI_0760 PF00005 ABC transporter AGREI_0761 PF07690 Major Facilitator Superfamily AGREI_0761 PF00083 Sugar (and other) transporter AGREI_0762 PF00294 pfkB family carbohydrate kinase AGREI_0763 PF00885 6,7-dimethyl-8-ribityllumazine synthase AGREI_0764 PF00925 GTP cyclohydrolase II AGREI_0764 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AGREI_0765 PF00677 Lumazine binding domain AGREI_0766 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AGREI_0766 PF01872 RibD C-terminal domain AGREI_0767 PF00535 Glycosyl transferase family 2 AGREI_0771 PF00579 tRNA synthetases class I (W and Y) AGREI_0774 PF13085 2Fe-2S iron-sulfur cluster binding domain AGREI_0775 PF00890 FAD binding domain AGREI_0775 PF02910 Fumarate reductase flavoprotein C-term AGREI_0777 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AGREI_0778 PF13439 Glycosyltransferase Family 4 AGREI_0778 PF00534 Glycosyl transferases group 1 AGREI_0779 PF00483 Nucleotidyl transferase AGREI_0779 PF01050 Mannose-6-phosphate isomerase AGREI_0780 PF02608 ABC transporter substrate-binding protein PnrA-like AGREI_0782 PF00005 ABC transporter AGREI_0783 PF02653 Branched-chain amino acid transport system / permease component AGREI_0784 PF02653 Branched-chain amino acid transport system / permease component AGREI_0785 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AGREI_0786 PF02885 Glycosyl transferase family, helical bundle domain AGREI_0786 PF00591 Glycosyl transferase family, a/b domain AGREI_0786 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AGREI_0792 PF00962 Adenosine/AMP deaminase AGREI_0793 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AGREI_0795 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AGREI_0795 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AGREI_0795 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AGREI_0795 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AGREI_0796 PF01048 Phosphorylase superfamily AGREI_0797 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_0797 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_0798 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AGREI_0798 PF00364 Biotin-requiring enzyme AGREI_0798 PF00289 Biotin carboxylase, N-terminal domain AGREI_0798 PF02785 Biotin carboxylase C-terminal domain AGREI_0799 PF02545 Maf-like protein AGREI_0800 PF01938 TRAM domain AGREI_0800 PF05958 tRNA (Uracil-5-)-methyltransferase AGREI_0805 PF01039 Carboxyl transferase domain AGREI_0806 PF08279 HTH domain AGREI_0806 PF02237 Biotin protein ligase C terminal domain AGREI_0806 PF03099 Biotin/lipoate A/B protein ligase family AGREI_0808 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AGREI_0808 PF02222 ATP-grasp domain AGREI_0809 PF00731 AIR carboxylase AGREI_0810 PF03816 Cell envelope-related transcriptional attenuator domain AGREI_0814 PF00483 Nucleotidyl transferase AGREI_0821 PF00535 Glycosyl transferase family 2 AGREI_0828 PF16363 GDP-mannose 4,6 dehydratase AGREI_0833 PF00005 ABC transporter AGREI_0833 PF14524 Wzt C-terminal domain AGREI_0834 PF01370 NAD dependent epimerase/dehydratase family AGREI_0844 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AGREI_0844 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AGREI_0844 PF02770 Acyl-CoA dehydrogenase, middle domain AGREI_0845 PF01238 Phosphomannose isomerase type I AGREI_0846 PF01965 DJ-1/PfpI family AGREI_0848 PF16363 GDP-mannose 4,6 dehydratase AGREI_0849 PF02467 Transcription factor WhiB AGREI_0855 PF05221 S-adenosyl-L-homocysteine hydrolase AGREI_0855 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AGREI_0861 PF17863 AAA lid domain AGREI_0861 PF07726 ATPase family associated with various cellular activities (AAA) AGREI_0862 PF14258 Domain of unknown function (DUF4350) AGREI_0865 PF00486 Transcriptional regulatory protein, C terminal AGREI_0865 PF00072 Response regulator receiver domain AGREI_0866 PF00672 HAMP domain AGREI_0866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0866 PF00512 His Kinase A (phospho-acceptor) domain AGREI_0867 PF10646 Sporulation and spore germination AGREI_0867 PF10647 Lipoprotein LpqB beta-propeller domain AGREI_0868 PF00156 Phosphoribosyl transferase domain AGREI_0869 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AGREI_0869 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AGREI_0870 PF01043 SecA preprotein cross-linking domain AGREI_0870 PF07516 SecA Wing and Scaffold domain AGREI_0870 PF07517 SecA DEAD-like domain AGREI_0876 PF12282 Signal transduction histidine kinase AGREI_0876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_0876 PF07568 Histidine kinase AGREI_0877 PF02467 Transcription factor WhiB AGREI_0879 PF00578 AhpC/TSA family AGREI_0882 PF00472 RF-1 domain AGREI_0882 PF03462 PCRF domain AGREI_0883 PF00723 Glycosyl hydrolases family 15 AGREI_0884 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AGREI_0884 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AGREI_0888 PF00120 Glutamine synthetase, catalytic domain AGREI_0888 PF03951 Glutamine synthetase, beta-Grasp domain AGREI_0889 PF07722 Peptidase C26 AGREI_0890 PF00171 Aldehyde dehydrogenase family AGREI_0892 PF00392 Bacterial regulatory proteins, gntR family AGREI_0892 PF07702 UTRA domain AGREI_0894 PF00982 Glycosyltransferase family 20 AGREI_0896 PF00920 Dehydratase family AGREI_0897 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AGREI_0897 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AGREI_0897 PF00205 Thiamine pyrophosphate enzyme, central domain AGREI_0898 PF10369 Small subunit of acetolactate synthase AGREI_0899 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AGREI_0899 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AGREI_0905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AGREI_0905 PF01842 ACT domain AGREI_0905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AGREI_0906 PF00440 Bacterial regulatory proteins, tetR family AGREI_0908 PF07690 Major Facilitator Superfamily AGREI_0911 PF00180 Isocitrate/isopropylmalate dehydrogenase AGREI_0912 PF01063 Amino-transferase class IV AGREI_0914 PF01557 Fumarylacetoacetate (FAA) hydrolase family AGREI_0915 PF00749 tRNA synthetases class I (E and Q), catalytic domain AGREI_0916 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_0919 PF06965 Na+/H+ antiporter 1 AGREI_0924 PF00809 Pterin binding enzyme AGREI_0925 PF02805 Metal binding domain of Ada AGREI_0925 PF00730 HhH-GPD superfamily base excision DNA repair protein AGREI_0925 PF12833 Helix-turn-helix domain AGREI_0925 PF06029 AlkA N-terminal domain AGREI_0931 PF00781 Diacylglycerol kinase catalytic domain AGREI_0935 PF04226 Transglycosylase associated protein AGREI_0938 PF03741 Integral membrane protein TerC family AGREI_0939 PF00330 Aconitase family (aconitate hydratase) AGREI_0940 PF00694 Aconitase C-terminal domain AGREI_0941 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AGREI_0943 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AGREI_0943 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AGREI_0944 PF01820 D-ala D-ala ligase N-terminus AGREI_0944 PF07478 D-ala D-ala ligase C-terminus AGREI_0945 PF00498 FHA domain AGREI_0945 PF12773 Double zinc ribbon AGREI_0948 PF00069 Protein kinase domain AGREI_0948 PF16919 Protein kinase G rubredoxin domain AGREI_0948 PF16918 Protein kinase G tetratricopeptide repeat AGREI_0950 PF00497 Bacterial extracellular solute-binding proteins, family 3 AGREI_0952 PF17866 AAA lid domain AGREI_0952 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_0955 PF01544 CorA-like Mg2+ transporter protein AGREI_0957 PF00586 AIR synthase related protein, N-terminal domain AGREI_0957 PF02769 AIR synthase related protein, C-terminal domain AGREI_0959 PF00271 Helicase conserved C-terminal domain AGREI_0959 PF17191 RecG wedge domain AGREI_0959 PF00270 DEAD/DEAH box helicase AGREI_0960 PF02463 RecF/RecN/SMC N terminal domain AGREI_0967 PF00239 Resolvase, N terminal domain AGREI_0967 PF02796 Helix-turn-helix domain of resolvase AGREI_0979 PF00583 Acetyltransferase (GNAT) family AGREI_0979 PF13673 Acetyltransferase (GNAT) domain AGREI_0985 PF07690 Major Facilitator Superfamily AGREI_0986 PF07859 alpha/beta hydrolase fold AGREI_0994 PF00005 ABC transporter AGREI_0995 PF01467 Cytidylyltransferase-like AGREI_0996 PF00296 Luciferase-like monooxygenase AGREI_0997 PF00881 Nitroreductase family AGREI_0997 PF01996 F420-0:Gamma-glutamyl ligase AGREI_0998 PF12804 MobA-like NTP transferase domain AGREI_1001 PF01933 Uncharacterised protein family UPF0052 AGREI_1004 PF00155 Aminotransferase class I and II AGREI_1004 PF00392 Bacterial regulatory proteins, gntR family AGREI_1005 PF00795 Carbon-nitrogen hydrolase AGREI_1006 PF01979 Amidohydrolase family AGREI_1008 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1009 PF00005 ABC transporter AGREI_1010 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1012 PF00202 Aminotransferase class-III AGREI_1013 PF03466 LysR substrate binding domain AGREI_1013 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_1014 PF02620 Large ribosomal RNA subunit accumulation protein YceD AGREI_1015 PF01783 Ribosomal L32p protein family AGREI_1016 PF14622 Ribonuclease-III-like AGREI_1016 PF00035 Double-stranded RNA binding motif AGREI_1017 PF06827 Zinc finger found in FPG and IleRS AGREI_1017 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AGREI_1017 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AGREI_1020 PF06912 Protein of unknown function (DUF1275) AGREI_1021 PF03069 Acetamidase/Formamidase family AGREI_1022 PF01425 Amidase AGREI_1023 PF00266 Aminotransferase class-V AGREI_1024 PF07687 Peptidase dimerisation domain AGREI_1024 PF01546 Peptidase family M20/M25/M40 AGREI_1026 PF06259 Alpha/beta hydrolase AGREI_1031 PF00704 Glycosyl hydrolases family 18 AGREI_1031 PF00041 Fibronectin type III domain AGREI_1034 PF01156 Inosine-uridine preferring nucleoside hydrolase AGREI_1037 PF00576 HIUase/Transthyretin family AGREI_1040 PF01979 Amidohydrolase family AGREI_1041 PF01014 Uricase AGREI_1042 PF01979 Amidohydrolase family AGREI_1045 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AGREI_1045 PF01243 Pyridoxamine 5'-phosphate oxidase AGREI_1046 PF02633 Creatinine amidohydrolase AGREI_1049 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1050 PF00005 ABC transporter AGREI_1051 PF07969 Amidohydrolase family AGREI_1052 PF00111 2Fe-2S iron-sulfur cluster binding domain AGREI_1053 PF07729 FCD domain AGREI_1053 PF00392 Bacterial regulatory proteins, gntR family AGREI_1055 PF01979 Amidohydrolase family AGREI_1056 PF00857 Isochorismatase family AGREI_1058 PF02633 Creatinine amidohydrolase AGREI_1060 PF17863 AAA lid domain AGREI_1060 PF01078 Magnesium chelatase, subunit ChlI AGREI_1061 PF01979 Amidohydrolase family AGREI_1062 PF02625 XdhC and CoxI family AGREI_1062 PF13478 XdhC Rossmann domain AGREI_1063 PF01979 Amidohydrolase family AGREI_1064 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AGREI_1064 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AGREI_1066 PF02391 MoaE protein AGREI_1067 PF00994 Probable molybdopterin binding domain AGREI_1068 PF01967 MoaC family AGREI_1069 PF00994 Probable molybdopterin binding domain AGREI_1069 PF03454 MoeA C-terminal region (domain IV) AGREI_1069 PF03453 MoeA N-terminal region (domain I and II) AGREI_1070 PF03459 TOBE domain AGREI_1070 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_1072 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1073 PF00005 ABC transporter AGREI_1073 PF03459 TOBE domain AGREI_1074 PF04055 Radical SAM superfamily AGREI_1074 PF06463 Molybdenum Cofactor Synthesis C AGREI_1076 PF13302 Acetyltransferase (GNAT) domain AGREI_1077 PF04978 Protein of unknown function (DUF664) AGREI_1078 PF00581 Rhodanese-like domain AGREI_1078 PF00899 ThiF family AGREI_1080 PF07689 KaiB domain AGREI_1081 PF06745 KaiC AGREI_1082 PF06470 SMC proteins Flexible Hinge Domain AGREI_1082 PF02463 RecF/RecN/SMC N terminal domain AGREI_1083 PF03099 Biotin/lipoate A/B protein ligase family AGREI_1084 PF04055 Radical SAM superfamily AGREI_1085 PF00448 SRP54-type protein, GTPase domain AGREI_1085 PF02881 SRP54-type protein, helical bundle domain AGREI_1086 PF00296 Luciferase-like monooxygenase AGREI_1087 PF05977 Transmembrane secretion effector AGREI_1089 PF00448 SRP54-type protein, GTPase domain AGREI_1089 PF02978 Signal peptide binding domain AGREI_1089 PF02881 SRP54-type protein, helical bundle domain AGREI_1092 PF04107 Glutamate-cysteine ligase family 2(GCS2) AGREI_1094 PF00886 Ribosomal protein S16 AGREI_1096 PF01782 RimM N-terminal domain AGREI_1099 PF01746 tRNA (Guanine-1)-methyltransferase AGREI_1100 PF00557 Metallopeptidase family M24 AGREI_1102 PF01245 Ribosomal protein L19 AGREI_1103 PF10502 Signal peptidase, peptidase S26 AGREI_1104 PF01351 Ribonuclease HII AGREI_1105 PF10611 Protein of unknown function (DUF2469) AGREI_1106 PF02909 Tetracyclin repressor-like, C-terminal domain AGREI_1106 PF00440 Bacterial regulatory proteins, tetR family AGREI_1107 PF00753 Metallo-beta-lactamase superfamily AGREI_1108 PF02021 Uncharacterised protein family UPF0102 AGREI_1109 PF13335 Magnesium chelatase, subunit ChlI C-terminal AGREI_1109 PF01078 Magnesium chelatase, subunit ChlI AGREI_1110 PF02481 DNA recombination-mediator protein A AGREI_1110 PF17782 DprA winged helix domain AGREI_1111 PF05368 NmrA-like family AGREI_1112 PF00356 Bacterial regulatory proteins, lacI family AGREI_1113 PF02449 Beta-galactosidase AGREI_1113 PF08532 Beta-galactosidase trimerisation domain AGREI_1113 PF08533 Beta-galactosidase C-terminal domain AGREI_1114 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1115 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1116 PF01547 Bacterial extracellular solute-binding protein AGREI_1117 PF16875 Glycosyl hydrolase family 36 N-terminal domain AGREI_1117 PF16874 Glycosyl hydrolase family 36 C-terminal domain AGREI_1118 PF00589 Phage integrase family AGREI_1118 PF02899 Phage integrase, N-terminal SAM-like domain AGREI_1119 PF01551 Peptidase family M23 AGREI_1120 PF00083 Sugar (and other) transporter AGREI_1121 PF00149 Calcineurin-like phosphoesterase AGREI_1123 PF00318 Ribosomal protein S2 AGREI_1124 PF00889 Elongation factor TS AGREI_1126 PF00696 Amino acid kinase family AGREI_1127 PF01765 Ribosome recycling factor AGREI_1134 PF01594 AI-2E family transporter AGREI_1138 PF00128 Alpha amylase, catalytic domain AGREI_1138 PF02806 Alpha amylase, C-terminal all-beta domain AGREI_1138 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AGREI_1139 PF11896 Domain of unknown function (DUF3416) AGREI_1141 PF11897 Protein of unknown function (DUF3417) AGREI_1141 PF00343 Carbohydrate phosphorylase AGREI_1142 PF00128 Alpha amylase, catalytic domain AGREI_1142 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AGREI_1143 PF00266 Aminotransferase class-V AGREI_1145 PF01475 Ferric uptake regulator family AGREI_1146 PF00199 Catalase AGREI_1146 PF06628 Catalase-related immune-responsive AGREI_1147 PF00085 Thioredoxin AGREI_1150 PF12826 Helix-hairpin-helix motif AGREI_1150 PF03120 NAD-dependent DNA ligase OB-fold domain AGREI_1150 PF01653 NAD-dependent DNA ligase adenylation domain AGREI_1150 PF00533 BRCA1 C Terminus (BRCT) domain AGREI_1150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AGREI_1151 PF02686 Glu-tRNAGln amidotransferase C subunit AGREI_1152 PF01425 Amidase AGREI_1153 PF02637 GatB domain AGREI_1153 PF02934 GatB/GatE catalytic domain AGREI_1154 PF00106 short chain dehydrogenase AGREI_1157 PF00501 AMP-binding enzyme AGREI_1157 PF13193 AMP-binding enzyme C-terminal domain AGREI_1158 PF02797 Chalcone and stilbene synthases, C-terminal domain AGREI_1158 PF00195 Chalcone and stilbene synthases, N-terminal domain AGREI_1159 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AGREI_1160 PF01494 FAD binding domain AGREI_1162 PF00248 Aldo/keto reductase family AGREI_1164 PF14849 YidC periplasmic domain AGREI_1164 PF02096 60Kd inner membrane protein AGREI_1166 PF00817 impB/mucB/samB family AGREI_1166 PF11799 impB/mucB/samB family C-terminal domain AGREI_1167 PF11941 Domain of unknown function (DUF3459) AGREI_1167 PF00128 Alpha amylase, catalytic domain AGREI_1168 PF00128 Alpha amylase, catalytic domain AGREI_1169 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AGREI_1169 PF00128 Alpha amylase, catalytic domain AGREI_1172 PF09819 ABC-type cobalt transport system, permease component AGREI_1173 PF00005 ABC transporter AGREI_1177 PF00768 D-alanyl-D-alanine carboxypeptidase AGREI_1179 PF00929 Exonuclease AGREI_1184 PF00175 Oxidoreductase NAD-binding domain AGREI_1184 PF00042 Globin AGREI_1184 PF00970 Oxidoreductase FAD-binding domain AGREI_1187 PF00248 Aldo/keto reductase family AGREI_1190 PF12848 ABC transporter AGREI_1190 PF00005 ABC transporter AGREI_1192 PF13180 PDZ domain AGREI_1195 PF01152 Bacterial-like globin AGREI_1196 PF00924 Mechanosensitive ion channel AGREI_1197 PF11838 ERAP1-like C-terminal domain AGREI_1197 PF01433 Peptidase family M1 domain AGREI_1198 PF02502 Ribose/Galactose Isomerase AGREI_1199 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AGREI_1199 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AGREI_1199 PF06827 Zinc finger found in FPG and IleRS AGREI_1200 PF04299 Putative FMN-binding domain AGREI_1201 PF01979 Amidohydrolase family AGREI_1203 PF03976 Polyphosphate kinase 2 (PPK2) AGREI_1204 PF00210 Ferritin-like domain AGREI_1206 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AGREI_1206 PF05697 Bacterial trigger factor protein (TF) AGREI_1206 PF05698 Bacterial trigger factor protein (TF) C-terminus AGREI_1207 PF00440 Bacterial regulatory proteins, tetR family AGREI_1209 PF01636 Phosphotransferase enzyme family AGREI_1210 PF04286 Protein of unknown function (DUF445) AGREI_1211 PF00574 Clp protease AGREI_1212 PF00574 Clp protease AGREI_1213 PF07724 AAA domain (Cdc48 subfamily) AGREI_1213 PF06689 ClpX C4-type zinc finger AGREI_1213 PF10431 C-terminal, D2-small domain, of ClpB protein AGREI_1214 PF03594 Benzoate membrane transport protein AGREI_1215 PF04954 Siderophore-interacting protein AGREI_1215 PF08021 Siderophore-interacting FAD-binding domain AGREI_1219 PF08264 Anticodon-binding domain of tRNA AGREI_1219 PF00133 tRNA synthetases class I (I, L, M and V) AGREI_1220 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain AGREI_1220 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain AGREI_1222 PF00440 Bacterial regulatory proteins, tetR family AGREI_1222 PF16925 Tetracyclin repressor-like, C-terminal domain AGREI_1223 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AGREI_1224 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1225 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1225 PF12911 N-terminal TM domain of oligopeptide transport permease C AGREI_1226 PF00005 ABC transporter AGREI_1226 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_1230 PF08264 Anticodon-binding domain of tRNA AGREI_1230 PF00133 tRNA synthetases class I (I, L, M and V) AGREI_1231 PF08245 Mur ligase middle domain AGREI_1231 PF02875 Mur ligase family, glutamate ligase domain AGREI_1233 PF00334 Nucleoside diphosphate kinase AGREI_1235 PF10150 Ribonuclease E/G family AGREI_1237 PF00829 Ribosomal prokaryotic L21 protein AGREI_1238 PF01016 Ribosomal L27 protein AGREI_1239 PF01926 50S ribosome-binding GTPase AGREI_1239 PF01018 GTP1/OBG AGREI_1239 PF09269 Domain of unknown function (DUF1967) AGREI_1240 PF00696 Amino acid kinase family AGREI_1241 PF00171 Aldehyde dehydrogenase family AGREI_1243 PF01467 Cytidylyltransferase-like AGREI_1247 PF00440 Bacterial regulatory proteins, tetR family AGREI_1248 PF07690 Major Facilitator Superfamily AGREI_1254 PF01323 DSBA-like thioredoxin domain AGREI_1255 PF04264 YceI-like domain AGREI_1256 PF00561 alpha/beta hydrolase fold AGREI_1258 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_1258 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_1258 PF02811 PHP domain AGREI_1258 PF14579 Helix-hairpin-helix motif AGREI_1261 PF00072 Response regulator receiver domain AGREI_1261 PF00196 Bacterial regulatory proteins, luxR family AGREI_1265 PF00571 CBS domain AGREI_1265 PF00005 ABC transporter AGREI_1266 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1267 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1269 PF09335 SNARE associated Golgi protein AGREI_1271 PF03965 Penicillinase repressor AGREI_1272 PF01654 Cytochrome bd terminal oxidase subunit I AGREI_1273 PF02322 Cytochrome bd terminal oxidase subunit II AGREI_1274 PF00005 ABC transporter AGREI_1274 PF00664 ABC transporter transmembrane region AGREI_1275 PF00005 ABC transporter AGREI_1275 PF00664 ABC transporter transmembrane region AGREI_1277 PF04715 Anthranilate synthase component I, N terminal region AGREI_1277 PF00117 Glutamine amidotransferase class-I AGREI_1277 PF00425 chorismate binding enzyme AGREI_1278 PF13673 Acetyltransferase (GNAT) domain AGREI_1278 PF00958 GMP synthase C terminal domain AGREI_1278 PF00117 Glutamine amidotransferase class-I AGREI_1278 PF13302 Acetyltransferase (GNAT) domain AGREI_1278 PF03352 Methyladenine glycosylase AGREI_1280 PF08264 Anticodon-binding domain of tRNA AGREI_1280 PF09334 tRNA synthetases class I (M) AGREI_1280 PF13603 Leucyl-tRNA synthetase, Domain 2 AGREI_1280 PF00133 tRNA synthetases class I (I, L, M and V) AGREI_1281 PF10531 SLBB domain AGREI_1284 PF01649 Ribosomal protein S20 AGREI_1285 PF00155 Aminotransferase class I and II AGREI_1287 PF00009 Elongation factor Tu GTP binding domain AGREI_1287 PF00679 Elongation factor G C-terminus AGREI_1287 PF06421 GTP-binding protein LepA C-terminus AGREI_1289 PF04055 Radical SAM superfamily AGREI_1292 PF01628 HrcA protein C terminal domain AGREI_1293 PF00226 DnaJ domain AGREI_1293 PF00684 DnaJ central domain AGREI_1293 PF01556 DnaJ C terminal domain AGREI_1294 PF04452 RNA methyltransferase AGREI_1295 PF01230 HIT domain AGREI_1296 PF02562 PhoH-like protein AGREI_1297 PF02130 Uncharacterized protein family UPF0054 AGREI_1298 PF00571 CBS domain AGREI_1298 PF03471 Transporter associated domain AGREI_1298 PF01595 Cyclin M transmembrane N-terminal domain AGREI_1299 PF01926 50S ribosome-binding GTPase AGREI_1299 PF07650 KH domain AGREI_1300 PF00701 Dihydrodipicolinate synthetase family AGREI_1301 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AGREI_1301 PF12706 Beta-lactamase superfamily domain AGREI_1301 PF17770 Ribonuclease J C-terminal domain AGREI_1303 PF17854 FtsK alpha domain AGREI_1303 PF01580 FtsK/SpoIIIE family AGREI_1303 PF09397 Ftsk gamma domain AGREI_1304 PF01066 CDP-alcohol phosphatidyltransferase AGREI_1305 PF00994 Probable molybdopterin binding domain AGREI_1305 PF18146 Damage-inducible protein CinA KH domain AGREI_1305 PF02464 Competence-damaged protein AGREI_1309 PF00154 recA bacterial DNA recombination protein AGREI_1311 PF04055 Radical SAM superfamily AGREI_1311 PF00919 Uncharacterized protein family UPF0004 AGREI_1313 PF01678 Diaminopimelate epimerase AGREI_1314 PF05175 Methyltransferase small domain AGREI_1315 PF16360 GTP-binding GTPase Middle Region AGREI_1315 PF13167 GTP-binding GTPase N-terminal AGREI_1315 PF01926 50S ribosome-binding GTPase AGREI_1316 PF00717 Peptidase S24-like AGREI_1316 PF01726 LexA DNA binding domain AGREI_1317 PF01476 LysM domain AGREI_1317 PF00877 NlpC/P60 family AGREI_1317 PF08239 Bacterial SH3 domain AGREI_1318 PF00155 Aminotransferase class I and II AGREI_1319 PF00475 Imidazoleglycerol-phosphate dehydratase AGREI_1320 PF00117 Glutamine amidotransferase class-I AGREI_1321 PF00977 Histidine biosynthesis protein AGREI_1324 PF00707 Translation initiation factor IF-3, C-terminal domain AGREI_1324 PF05198 Translation initiation factor IF-3, N-terminal domain AGREI_1325 PF01632 Ribosomal protein L35 AGREI_1326 PF00453 Ribosomal protein L20 AGREI_1327 PF08032 RNA 2'-O ribose methyltransferase substrate binding AGREI_1327 PF00588 SpoU rRNA Methylase family AGREI_1328 PF00005 ABC transporter AGREI_1329 PF00497 Bacterial extracellular solute-binding proteins, family 3 AGREI_1330 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1331 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1332 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AGREI_1332 PF01409 tRNA synthetases class II core domain (F) AGREI_1333 PF03483 B3/4 domain AGREI_1333 PF03484 tRNA synthetase B5 domain AGREI_1333 PF01588 Putative tRNA binding domain AGREI_1333 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AGREI_1333 PF03147 Ferredoxin-fold anticodon binding domain AGREI_1334 PF02774 Semialdehyde dehydrogenase, dimerisation domain AGREI_1334 PF01118 Semialdehyde dehydrogenase, NAD binding domain AGREI_1335 PF01960 ArgJ family AGREI_1336 PF00696 Amino acid kinase family AGREI_1337 PF00202 Aminotransferase class-III AGREI_1338 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AGREI_1338 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AGREI_1339 PF00206 Lyase AGREI_1339 PF14698 Argininosuccinate lyase C-terminal AGREI_1340 PF02245 Methylpurine-DNA glycosylase (MPG) AGREI_1343 PF00579 tRNA synthetases class I (W and Y) AGREI_1354 PF18407 GCN5-related N-acetyltransferase like domain AGREI_1354 PF13344 Haloacid dehalogenase-like hydrolase AGREI_1355 PF01479 S4 domain AGREI_1355 PF01728 FtsJ-like methyltransferase AGREI_1356 PF01513 ATP-NAD kinase AGREI_1357 PF02463 RecF/RecN/SMC N terminal domain AGREI_1358 PF06418 CTP synthase N-terminus AGREI_1358 PF00117 Glutamine amidotransferase class-I AGREI_1359 PF00293 NUDIX domain AGREI_1360 PF00589 Phage integrase family AGREI_1360 PF02899 Phage integrase, N-terminal SAM-like domain AGREI_1361 PF13614 AAA domain AGREI_1362 PF02616 Segregation and condensation protein ScpA AGREI_1363 PF04079 Segregation and condensation complex subunit ScpB AGREI_1364 PF00849 RNA pseudouridylate synthase AGREI_1364 PF01479 S4 domain AGREI_1366 PF02224 Cytidylate kinase AGREI_1367 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AGREI_1367 PF01926 50S ribosome-binding GTPase AGREI_1370 PF00005 ABC transporter AGREI_1373 PF00480 ROK family AGREI_1374 PF01547 Bacterial extracellular solute-binding protein AGREI_1375 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1376 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1378 PF02541 Ppx/GppA phosphatase family AGREI_1381 PF03551 Transcriptional regulator PadR-like family AGREI_1382 PF03109 ABC1 family AGREI_1383 PF13520 Amino acid permease AGREI_1385 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_1385 PF00107 Zinc-binding dehydrogenase AGREI_1386 PF03880 DbpA RNA binding domain AGREI_1386 PF00271 Helicase conserved C-terminal domain AGREI_1386 PF00270 DEAD/DEAH box helicase AGREI_1387 PF04237 YjbR AGREI_1389 PF00296 Luciferase-like monooxygenase AGREI_1394 PF04679 ATP dependent DNA ligase C terminal region AGREI_1394 PF01068 ATP dependent DNA ligase domain AGREI_1398 PF00150 Cellulase (glycosyl hydrolase family 5) AGREI_1403 PF00107 Zinc-binding dehydrogenase AGREI_1403 PF13823 Alcohol dehydrogenase GroES-associated AGREI_1403 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_1404 PF01556 DnaJ C terminal domain AGREI_1404 PF00226 DnaJ domain AGREI_1404 PF00684 DnaJ central domain AGREI_1405 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AGREI_1405 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AGREI_1410 PF00293 NUDIX domain AGREI_1411 PF00498 FHA domain AGREI_1412 PF00376 MerR family regulatory protein AGREI_1414 PF13411 MerR HTH family regulatory protein AGREI_1415 PF13614 AAA domain AGREI_1416 PF00364 Biotin-requiring enzyme AGREI_1416 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AGREI_1416 PF00682 HMGL-like AGREI_1416 PF02436 Conserved carboxylase domain AGREI_1416 PF02785 Biotin carboxylase C-terminal domain AGREI_1416 PF00289 Biotin carboxylase, N-terminal domain AGREI_1417 PF01327 Polypeptide deformylase AGREI_1421 PF00501 AMP-binding enzyme AGREI_1422 PF00480 ROK family AGREI_1423 PF01553 Acyltransferase AGREI_1424 PF01474 Class-II DAHP synthetase family AGREI_1425 PF03793 PASTA domain AGREI_1425 PF00069 Protein kinase domain AGREI_1426 PF01476 LysM domain AGREI_1426 PF00005 ABC transporter AGREI_1428 PF00348 Polyprenyl synthetase AGREI_1430 PF02381 MraZ protein, putative antitoxin-like AGREI_1431 PF01795 MraW methylase family AGREI_1433 PF03717 Penicillin-binding Protein dimerisation domain AGREI_1433 PF00905 Penicillin binding protein transpeptidase domain AGREI_1434 PF08245 Mur ligase middle domain AGREI_1434 PF01225 Mur ligase family, catalytic domain AGREI_1434 PF02875 Mur ligase family, glutamate ligase domain AGREI_1435 PF02875 Mur ligase family, glutamate ligase domain AGREI_1435 PF08245 Mur ligase middle domain AGREI_1435 PF01225 Mur ligase family, catalytic domain AGREI_1436 PF00953 Glycosyl transferase family 4 AGREI_1437 PF02875 Mur ligase family, glutamate ligase domain AGREI_1437 PF08245 Mur ligase middle domain AGREI_1438 PF01098 Cell cycle protein AGREI_1439 PF04101 Glycosyltransferase family 28 C-terminal domain AGREI_1439 PF03033 Glycosyltransferase family 28 N-terminal domain AGREI_1440 PF08245 Mur ligase middle domain AGREI_1440 PF02875 Mur ligase family, glutamate ligase domain AGREI_1440 PF01225 Mur ligase family, catalytic domain AGREI_1441 PF08478 POTRA domain, FtsQ-type AGREI_1441 PF03799 Cell division protein FtsQ AGREI_1442 PF00091 Tubulin/FtsZ family, GTPase domain AGREI_1442 PF12327 FtsZ family, C-terminal domain AGREI_1443 PF01168 Alanine racemase, N-terminal domain AGREI_1444 PF04472 Cell division protein SepF AGREI_1446 PF05103 DivIVA protein AGREI_1447 PF01252 Signal peptidase (SPase) II AGREI_1448 PF00849 RNA pseudouridylate synthase AGREI_1449 PF02811 PHP domain AGREI_1449 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_1449 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_1449 PF14579 Helix-hairpin-helix motif AGREI_1451 PF00815 Histidinol dehydrogenase AGREI_1452 PF03477 ATP cone domain AGREI_1453 PF01180 Dihydroorotate dehydrogenase AGREI_1455 PF11241 Protein of unknown function (DUF3043) AGREI_1456 PF01546 Peptidase family M20/M25/M40 AGREI_1456 PF07687 Peptidase dimerisation domain AGREI_1457 PF01521 Iron-sulphur cluster biosynthesis AGREI_1458 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AGREI_1459 PF00115 Cytochrome C and Quinol oxidase polypeptide I AGREI_1460 PF12270 Cytochrome c oxidase subunit IV AGREI_1462 PF13631 Cytochrome b(N-terminal)/b6/petB AGREI_1463 PF00355 Rieske [2Fe-2S] domain AGREI_1464 PF00034 Cytochrome c AGREI_1464 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AGREI_1465 PF00510 Cytochrome c oxidase subunit III AGREI_1466 PF02885 Glycosyl transferase family, helical bundle domain AGREI_1466 PF00591 Glycosyl transferase family, a/b domain AGREI_1467 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AGREI_1467 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AGREI_1468 PF00230 Major intrinsic protein AGREI_1469 PF02733 Dak1 domain AGREI_1470 PF02734 DAK2 domain AGREI_1471 PF00381 PTS HPr component phosphorylation site AGREI_1471 PF00391 PEP-utilising enzyme, mobile domain AGREI_1471 PF05524 PEP-utilising enzyme, N-terminal AGREI_1471 PF03610 PTS system fructose IIA component AGREI_1472 PF00293 NUDIX domain AGREI_1475 PF01145 SPFH domain / Band 7 family AGREI_1476 PF03009 Glycerophosphoryl diester phosphodiesterase family AGREI_1477 PF13397 RNA polymerase-binding protein AGREI_1478 PF00535 Glycosyl transferase family 2 AGREI_1478 PF00795 Carbon-nitrogen hydrolase AGREI_1479 PF08148 DSHCT (NUC185) domain AGREI_1479 PF00271 Helicase conserved C-terminal domain AGREI_1479 PF00270 DEAD/DEAH box helicase AGREI_1480 PF00902 Sec-independent protein translocase protein (TatC) AGREI_1481 PF02416 mttA/Hcf106 family AGREI_1484 PF13280 WYL domain AGREI_1486 PF08704 tRNA methyltransferase complex GCD14 subunit AGREI_1487 PF13419 Haloacid dehalogenase-like hydrolase AGREI_1489 PF01406 tRNA synthetases class I (C) catalytic domain AGREI_1490 PF02673 Bacitracin resistance protein BacA AGREI_1491 PF07687 Peptidase dimerisation domain AGREI_1491 PF01546 Peptidase family M20/M25/M40 AGREI_1492 PF00313 'Cold-shock' DNA-binding domain AGREI_1493 PF00877 NlpC/P60 family AGREI_1494 PF04851 Type III restriction enzyme, res subunit AGREI_1496 PF00768 D-alanyl-D-alanine carboxypeptidase AGREI_1497 PF13520 Amino acid permease AGREI_1498 PF00588 SpoU rRNA Methylase family AGREI_1499 PF02146 Sir2 family AGREI_1500 PF00300 Histidine phosphatase superfamily (branch 1) AGREI_1501 PF13439 Glycosyltransferase Family 4 AGREI_1501 PF00534 Glycosyl transferases group 1 AGREI_1503 PF16657 Maltogenic Amylase, C-terminal domain AGREI_1503 PF00128 Alpha amylase, catalytic domain AGREI_1505 PF01197 Ribosomal protein L31 AGREI_1506 PF00005 ABC transporter AGREI_1507 PF13439 Glycosyltransferase Family 4 AGREI_1507 PF00534 Glycosyl transferases group 1 AGREI_1508 PF00483 Nucleotidyl transferase AGREI_1512 PF02361 Cobalt transport protein AGREI_1513 PF00005 ABC transporter AGREI_1514 PF02803 Thiolase, C-terminal domain AGREI_1514 PF00108 Thiolase, N-terminal domain AGREI_1515 PF00501 AMP-binding enzyme AGREI_1515 PF13193 AMP-binding enzyme C-terminal domain AGREI_1516 PF02632 BioY family AGREI_1518 PF00005 ABC transporter AGREI_1518 PF12848 ABC transporter AGREI_1518 PF16326 ABC transporter C-terminal domain AGREI_1519 PF01883 Iron-sulfur cluster assembly protein AGREI_1520 PF00005 ABC transporter AGREI_1521 PF00355 Rieske [2Fe-2S] domain AGREI_1522 PF01458 Uncharacterized protein family (UPF0051) AGREI_1523 PF01458 Uncharacterized protein family (UPF0051) AGREI_1524 PF02628 Cytochrome oxidase assembly protein AGREI_1525 PF01040 UbiA prenyltransferase family AGREI_1526 PF03928 Haem-degrading AGREI_1527 PF00456 Transketolase, thiamine diphosphate binding domain AGREI_1527 PF02780 Transketolase, C-terminal domain AGREI_1527 PF02779 Transketolase, pyrimidine binding domain AGREI_1528 PF00923 Transaldolase/Fructose-6-phosphate aldolase AGREI_1529 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AGREI_1529 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AGREI_1531 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AGREI_1533 PF03840 Preprotein translocase SecG subunit AGREI_1534 PF00121 Triosephosphate isomerase AGREI_1535 PF00162 Phosphoglycerate kinase AGREI_1536 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AGREI_1536 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AGREI_1537 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AGREI_1537 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AGREI_1538 PF02650 WhiA C-terminal HTH domain AGREI_1538 PF14527 WhiA LAGLIDADG-like domain AGREI_1538 PF10298 WhiA N-terminal LAGLIDADG-like domain AGREI_1539 PF03668 P-loop ATPase protein family AGREI_1540 PF01541 GIY-YIG catalytic domain AGREI_1540 PF08459 UvrC Helix-hairpin-helix N-terminal AGREI_1540 PF02151 UvrB/uvrC motif AGREI_1541 PF17760 UvrA interaction domain AGREI_1541 PF00005 ABC transporter AGREI_1541 PF17755 UvrA DNA-binding domain AGREI_1542 PF04851 Type III restriction enzyme, res subunit AGREI_1542 PF12344 Ultra-violet resistance protein B AGREI_1542 PF17757 UvrB interaction domain AGREI_1542 PF00271 Helicase conserved C-terminal domain AGREI_1542 PF02151 UvrB/uvrC motif AGREI_1543 PF00365 Phosphofructokinase AGREI_1544 PF01121 Dephospho-CoA kinase AGREI_1545 PF00575 S1 RNA binding domain AGREI_1548 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AGREI_1548 PF00476 DNA polymerase family A AGREI_1548 PF01367 5'-3' exonuclease, C-terminal SAM fold AGREI_1549 PF03061 Thioesterase superfamily AGREI_1551 PF00072 Response regulator receiver domain AGREI_1551 PF03861 ANTAR domain AGREI_1554 PF00224 Pyruvate kinase, barrel domain AGREI_1554 PF02887 Pyruvate kinase, alpha/beta domain AGREI_1555 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AGREI_1555 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_1556 PF01493 GXGXG motif AGREI_1556 PF01645 Conserved region in glutamate synthase AGREI_1556 PF04898 Glutamate synthase central domain AGREI_1556 PF00310 Glutamine amidotransferases class-II AGREI_1557 PF01790 Prolipoprotein diacylglyceryl transferase AGREI_1558 PF00290 Tryptophan synthase alpha chain AGREI_1559 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_1560 PF00218 Indole-3-glycerol phosphate synthase AGREI_1563 PF04715 Anthranilate synthase component I, N terminal region AGREI_1563 PF00425 chorismate binding enzyme AGREI_1565 PF00977 Histidine biosynthesis protein AGREI_1566 PF08029 HisG, C-terminal domain AGREI_1566 PF01634 ATP phosphoribosyltransferase AGREI_1568 PF00834 Ribulose-phosphate 3 epimerase family AGREI_1569 PF01029 NusB family AGREI_1569 PF01189 16S rRNA methyltransferase RsmB/F AGREI_1570 PF02911 Formyl transferase, C-terminal domain AGREI_1570 PF00551 Formyl transferase AGREI_1571 PF17764 3′ DNA-binding domain (3′BD) AGREI_1572 PF00438 S-adenosylmethionine synthetase, N-terminal domain AGREI_1572 PF02773 S-adenosylmethionine synthetase, C-terminal domain AGREI_1572 PF02772 S-adenosylmethionine synthetase, central domain AGREI_1573 PF04127 DNA / pantothenate metabolism flavoprotein AGREI_1573 PF02441 Flavoprotein AGREI_1574 PF01192 RNA polymerase Rpb6 AGREI_1575 PF00625 Guanylate kinase AGREI_1576 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AGREI_1577 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AGREI_1577 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AGREI_1577 PF02142 MGS-like domain AGREI_1578 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AGREI_1578 PF00117 Glutamine amidotransferase class-I AGREI_1580 PF01979 Amidohydrolase family AGREI_1581 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AGREI_1581 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AGREI_1582 PF00156 Phosphoribosyl transferase domain AGREI_1583 PF01029 NusB family AGREI_1584 PF08207 Elongation factor P (EF-P) KOW-like domain AGREI_1584 PF09285 Elongation factor P, C-terminal AGREI_1584 PF01132 Elongation factor P (EF-P) OB domain AGREI_1585 PF01220 Dehydroquinase class II AGREI_1587 PF01761 3-dehydroquinate synthase AGREI_1588 PF01202 Shikimate kinase AGREI_1589 PF01264 Chorismate synthase AGREI_1590 PF08501 Shikimate dehydrogenase substrate binding domain AGREI_1590 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AGREI_1592 PF03652 Holliday junction resolvase AGREI_1593 PF01411 tRNA synthetases class II (A) AGREI_1593 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AGREI_1593 PF02272 DHHA1 domain AGREI_1597 PF01479 S4 domain AGREI_1597 PF00163 Ribosomal protein S4/S9 N-terminal domain AGREI_1598 PF16193 AAA C-terminal domain AGREI_1598 PF12002 MgsA AAA+ ATPase C terminal AGREI_1598 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_1600 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AGREI_1601 PF03993 Domain of Unknown Function (DUF349) AGREI_1603 PF13291 ACT domain AGREI_1603 PF04607 Region found in RelA / SpoT proteins AGREI_1603 PF02824 TGS domain AGREI_1604 PF02355 Protein export membrane protein AGREI_1604 PF07549 SecD/SecF GG Motif AGREI_1605 PF07549 SecD/SecF GG Motif AGREI_1605 PF02355 Protein export membrane protein AGREI_1607 PF05496 Holliday junction DNA helicase RuvB P-loop domain AGREI_1607 PF17864 RuvB AAA lid domain AGREI_1607 PF05491 RuvB C-terminal winged helix domain AGREI_1608 PF07499 RuvA, C-terminal domain AGREI_1608 PF01330 RuvA N terminal domain AGREI_1609 PF02075 Crossover junction endodeoxyribonuclease RuvC AGREI_1610 PF01709 Transcriptional regulator AGREI_1611 PF01174 SNO glutamine amidotransferase family AGREI_1612 PF01680 SOR/SNZ family AGREI_1613 PF01230 HIT domain AGREI_1614 PF03129 Anticodon binding domain AGREI_1614 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AGREI_1614 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AGREI_1616 PF01223 DNA/RNA non-specific endonuclease AGREI_1618 PF00296 Luciferase-like monooxygenase AGREI_1619 PF07690 Major Facilitator Superfamily AGREI_1622 PF00723 Glycosyl hydrolases family 15 AGREI_1623 PF00210 Ferritin-like domain AGREI_1625 PF00909 Ammonium Transporter Family AGREI_1627 PF00581 Rhodanese-like domain AGREI_1628 PF02657 Fe-S metabolism associated domain AGREI_1631 PF01612 3'-5' exonuclease AGREI_1631 PF00570 HRDC domain AGREI_1632 PF00108 Thiolase, N-terminal domain AGREI_1632 PF02803 Thiolase, C-terminal domain AGREI_1633 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AGREI_1633 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AGREI_1633 PF00378 Enoyl-CoA hydratase/isomerase AGREI_1634 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AGREI_1634 PF02780 Transketolase, C-terminal domain AGREI_1634 PF02779 Transketolase, pyrimidine binding domain AGREI_1635 PF00330 Aconitase family (aconitate hydratase) AGREI_1635 PF00694 Aconitase C-terminal domain AGREI_1638 PF00692 dUTPase AGREI_1643 PF03989 DNA gyrase C-terminal domain, beta-propeller AGREI_1643 PF00521 DNA gyrase/topoisomerase IV, subunit A AGREI_1645 PF00986 DNA gyrase B subunit, carboxyl terminus AGREI_1645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_1645 PF01751 Toprim domain AGREI_1645 PF00204 DNA gyrase B AGREI_1646 PF01168 Alanine racemase, N-terminal domain AGREI_1646 PF00842 Alanine racemase, C-terminal domain AGREI_1647 PF00842 Alanine racemase, C-terminal domain AGREI_1647 PF01168 Alanine racemase, N-terminal domain AGREI_1649 PF08353 Domain of unknown function (DUF1727) AGREI_1649 PF08245 Mur ligase middle domain AGREI_1650 PF04539 Sigma-70 region 3 AGREI_1650 PF04542 Sigma-70 region 2 AGREI_1650 PF04545 Sigma-70, region 4 AGREI_1650 PF00140 Sigma-70 factor, region 1.2 AGREI_1652 PF02789 Cytosol aminopeptidase family, N-terminal domain AGREI_1652 PF00883 Cytosol aminopeptidase family, catalytic domain AGREI_1653 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_1653 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_1654 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AGREI_1654 PF02817 e3 binding domain AGREI_1654 PF00364 Biotin-requiring enzyme AGREI_1655 PF03793 PASTA domain AGREI_1655 PF00069 Protein kinase domain AGREI_1658 PF00120 Glutamine synthetase, catalytic domain AGREI_1658 PF03951 Glutamine synthetase, beta-Grasp domain AGREI_1660 PF03710 Glutamate-ammonia ligase adenylyltransferase AGREI_1660 PF08335 GlnD PII-uridylyltransferase AGREI_1661 PF03951 Glutamine synthetase, beta-Grasp domain AGREI_1661 PF00120 Glutamine synthetase, catalytic domain AGREI_1663 PF02548 Ketopantoate hydroxymethyltransferase AGREI_1665 PF00480 ROK family AGREI_1667 PF01784 NIF3 (NGG1p interacting factor 3) AGREI_1669 PF01546 Peptidase family M20/M25/M40 AGREI_1669 PF07687 Peptidase dimerisation domain AGREI_1672 PF02899 Phage integrase, N-terminal SAM-like domain AGREI_1672 PF00589 Phage integrase family AGREI_1680 PF00041 Fibronectin type III domain AGREI_1680 PF01341 Glycosyl hydrolases family 6 AGREI_1680 PF00553 Cellulose binding domain AGREI_1727 PF02903 Alpha amylase, N-terminal ig-like domain AGREI_1727 PF16657 Maltogenic Amylase, C-terminal domain AGREI_1727 PF00128 Alpha amylase, catalytic domain AGREI_1728 PF00578 AhpC/TSA family AGREI_1728 PF10417 C-terminal domain of 1-Cys peroxiredoxin AGREI_1729 PF17831 Pyruvate dehydrogenase E1 component middle domain AGREI_1729 PF00456 Transketolase, thiamine diphosphate binding domain AGREI_1730 PF13556 PucR C-terminal helix-turn-helix domain AGREI_1730 PF17853 GGDEF-like domain AGREI_1732 PF00698 Acyl transferase domain AGREI_1733 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AGREI_1733 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AGREI_1734 PF00550 Phosphopantetheine attachment site AGREI_1735 PF02801 Beta-ketoacyl synthase, C-terminal domain AGREI_1735 PF00109 Beta-ketoacyl synthase, N-terminal domain AGREI_1738 PF11992 Domain of unknown function (DUF3488) AGREI_1738 PF01841 Transglutaminase-like superfamily AGREI_1738 PF13559 Domain of unknown function (DUF4129) AGREI_1740 PF17863 AAA lid domain AGREI_1740 PF07726 ATPase family associated with various cellular activities (AAA) AGREI_1742 PF00534 Glycosyl transferases group 1 AGREI_1742 PF13439 Glycosyltransferase Family 4 AGREI_1744 PF01327 Polypeptide deformylase AGREI_1747 PF00005 ABC transporter AGREI_1747 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_1748 PF00005 ABC transporter AGREI_1748 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_1749 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1749 PF12911 N-terminal TM domain of oligopeptide transport permease C AGREI_1750 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1752 PF13662 Toprim domain AGREI_1752 PF08275 DNA primase catalytic core, N-terminal domain AGREI_1752 PF01807 CHC2 zinc finger AGREI_1752 PF10410 DnaB-helicase binding domain of primase AGREI_1752 PF08278 DNA primase DnaG DnaB-binding AGREI_1753 PF01966 HD domain AGREI_1753 PF13286 Phosphohydrolase-associated domain AGREI_1754 PF01207 Dihydrouridine synthase (Dus) AGREI_1756 PF03129 Anticodon binding domain AGREI_1756 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AGREI_1756 PF04073 Aminoacyl-tRNA editing domain AGREI_1758 PF01255 Putative undecaprenyl diphosphate synthase AGREI_1759 PF11967 Recombination protein O N terminal AGREI_1759 PF02565 Recombination protein O C terminal AGREI_1760 PF03458 UPF0126 domain AGREI_1761 PF00682 HMGL-like AGREI_1761 PF08502 LeuA allosteric (dimerisation) domain AGREI_1763 PF01370 NAD dependent epimerase/dehydratase family AGREI_1763 PF08338 Domain of unknown function (DUF1731) AGREI_1765 PF05173 Dihydrodipicolinate reductase, C-terminus AGREI_1765 PF01113 Dihydrodipicolinate reductase, N-terminus AGREI_1768 PF05193 Peptidase M16 inactive domain AGREI_1768 PF00675 Insulinase (Peptidase family M16) AGREI_1769 PF00013 KH domain AGREI_1769 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AGREI_1769 PF01138 3' exoribonuclease family, domain 1 AGREI_1769 PF00575 S1 RNA binding domain AGREI_1776 PF00312 Ribosomal protein S15 AGREI_1777 PF07690 Major Facilitator Superfamily AGREI_1778 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_1778 PF03466 LysR substrate binding domain AGREI_1779 PF05977 Transmembrane secretion effector AGREI_1780 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AGREI_1783 PF02913 FAD linked oxidases, C-terminal domain AGREI_1783 PF01565 FAD binding domain AGREI_1784 PF00206 Lyase AGREI_1784 PF10415 Fumarase C C-terminus AGREI_1785 PF00248 Aldo/keto reductase family AGREI_1786 PF18085 Maltokinase N-terminal cap domain AGREI_1787 PF00326 Prolyl oligopeptidase family AGREI_1787 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain AGREI_1788 PF00149 Calcineurin-like phosphoesterase AGREI_1789 PF11380 Stealth protein CR2, conserved region 2 AGREI_1789 PF17102 Stealth protein CR3, conserved region 3 AGREI_1789 PF17103 Stealth protein CR4, conserved region 4 AGREI_1789 PF17101 Stealth protein CR1, conserved region 1 AGREI_1790 PF01544 CorA-like Mg2+ transporter protein AGREI_1791 PF13409 Glutathione S-transferase, N-terminal domain AGREI_1792 PF00271 Helicase conserved C-terminal domain AGREI_1792 PF04434 SWIM zinc finger AGREI_1792 PF00176 SNF2 family N-terminal domain AGREI_1794 PF08338 Domain of unknown function (DUF1731) AGREI_1794 PF01370 NAD dependent epimerase/dehydratase family AGREI_1797 PF01593 Flavin containing amine oxidoreductase AGREI_1799 PF13460 NAD(P)H-binding AGREI_1799 PF11066 Protein of unknown function (DUF2867) AGREI_1801 PF00480 ROK family AGREI_1802 PF06574 FAD synthetase AGREI_1802 PF01687 Riboflavin kinase AGREI_1805 PF09142 tRNA Pseudouridine synthase II, C terminal AGREI_1805 PF01509 TruB family pseudouridylate synthase (N terminal domain) AGREI_1805 PF16198 tRNA pseudouridylate synthase B C-terminal domain AGREI_1812 PF00633 Helix-hairpin-helix motif AGREI_1812 PF10576 Iron-sulfur binding domain of endonuclease III AGREI_1812 PF00730 HhH-GPD superfamily base excision DNA repair protein AGREI_1813 PF08546 Ketopantoate reductase PanE/ApbA C terminal AGREI_1813 PF02558 Ketopantoate reductase PanE/ApbA AGREI_1814 PF02033 Ribosome-binding factor A AGREI_1815 PF11987 Translation-initiation factor 2 AGREI_1815 PF00009 Elongation factor Tu GTP binding domain AGREI_1815 PF04760 Translation initiation factor IF-2, N-terminal region AGREI_1816 PF04760 Translation initiation factor IF-2, N-terminal region AGREI_1816 PF11987 Translation-initiation factor 2 AGREI_1816 PF00009 Elongation factor Tu GTP binding domain AGREI_1818 PF13184 NusA-like KH domain AGREI_1818 PF08529 NusA N-terminal domain AGREI_1819 PF03129 Anticodon binding domain AGREI_1819 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AGREI_1819 PF04073 Aminoacyl-tRNA editing domain AGREI_1820 PF03816 Cell envelope-related transcriptional attenuator domain AGREI_1820 PF13399 LytR cell envelope-related transcriptional attenuator AGREI_1826 PF17863 AAA lid domain AGREI_1826 PF07726 ATPase family associated with various cellular activities (AAA) AGREI_1827 PF04551 GcpE protein AGREI_1828 PF00072 Response regulator receiver domain AGREI_1828 PF00196 Bacterial regulatory proteins, luxR family AGREI_1829 PF07730 Histidine kinase AGREI_1829 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_1829 PF00672 HAMP domain AGREI_1830 PF02163 Peptidase family M50 AGREI_1830 PF17820 PDZ domain AGREI_1831 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AGREI_1831 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AGREI_1831 PF13288 DXP reductoisomerase C-terminal domain AGREI_1833 PF07690 Major Facilitator Superfamily AGREI_1834 PF00550 Phosphopantetheine attachment site AGREI_1834 PF00668 Condensation domain AGREI_1834 PF13193 AMP-binding enzyme C-terminal domain AGREI_1834 PF00501 AMP-binding enzyme AGREI_1835 PF11838 ERAP1-like C-terminal domain AGREI_1835 PF01433 Peptidase family M1 domain AGREI_1836 PF01648 4'-phosphopantetheinyl transferase superfamily AGREI_1838 PF00202 Aminotransferase class-III AGREI_1840 PF12538 DNA transporter AGREI_1840 PF01580 FtsK/SpoIIIE family AGREI_1845 PF00117 Glutamine amidotransferase class-I AGREI_1845 PF00958 GMP synthase C terminal domain AGREI_1845 PF03352 Methyladenine glycosylase AGREI_1845 PF13673 Acetyltransferase (GNAT) domain AGREI_1845 PF13302 Acetyltransferase (GNAT) domain AGREI_1847 PF03883 Peroxide stress protein YaaA AGREI_1848 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AGREI_1849 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AGREI_1849 PF02874 ATP synthase alpha/beta family, beta-barrel domain AGREI_1850 PF00231 ATP synthase AGREI_1851 PF00306 ATP synthase alpha/beta chain, C terminal domain AGREI_1851 PF02874 ATP synthase alpha/beta family, beta-barrel domain AGREI_1851 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AGREI_1852 PF00213 ATP synthase delta (OSCP) subunit AGREI_1853 PF00430 ATP synthase B/B' CF(0) AGREI_1854 PF00137 ATP synthase subunit C AGREI_1855 PF00119 ATP synthase A chain AGREI_1857 PF00953 Glycosyl transferase family 4 AGREI_1858 PF01300 Telomere recombination AGREI_1859 PF01757 Acyltransferase family AGREI_1860 PF13649 Methyltransferase domain AGREI_1860 PF17827 PrmC N-terminal domain AGREI_1861 PF00472 RF-1 domain AGREI_1861 PF03462 PCRF domain AGREI_1862 PF07497 Rho termination factor, RNA-binding domain AGREI_1862 PF07498 Rho termination factor, N-terminal domain AGREI_1862 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AGREI_1863 PF00288 GHMP kinases N terminal domain AGREI_1864 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_1865 PF00742 Homoserine dehydrogenase AGREI_1865 PF01842 ACT domain AGREI_1865 PF03447 Homoserine dehydrogenase, NAD binding domain AGREI_1866 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AGREI_1866 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AGREI_1869 PF03485 Arginyl tRNA synthetase N terminal domain AGREI_1869 PF05746 DALR anticodon binding domain AGREI_1869 PF00750 tRNA synthetases class I (R) AGREI_1870 PF01841 Transglutaminase-like superfamily AGREI_1870 PF08379 Bacterial transglutaminase-like N-terminal region AGREI_1871 PF00205 Thiamine pyrophosphate enzyme, central domain AGREI_1871 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AGREI_1871 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AGREI_1877 PF07722 Peptidase C26 AGREI_1878 PF04536 TPM domain AGREI_1879 PF04012 PspA/IM30 family AGREI_1880 PF00491 Arginase family AGREI_1881 PF00378 Enoyl-CoA hydratase/isomerase AGREI_1882 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_1882 PF00403 Heavy-metal-associated domain AGREI_1882 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_1884 PF00106 short chain dehydrogenase AGREI_1885 PF13419 Haloacid dehalogenase-like hydrolase AGREI_1886 PF03633 Glycosyl hydrolase family 65, C-terminal domain AGREI_1886 PF03632 Glycosyl hydrolase family 65 central catalytic domain AGREI_1886 PF03636 Glycosyl hydrolase family 65, N-terminal domain AGREI_1887 PF17668 Acetyltransferase (GNAT) domain AGREI_1887 PF13530 Sterol carrier protein domain AGREI_1889 PF01425 Amidase AGREI_1891 PF03167 Uracil DNA glycosylase superfamily AGREI_1893 PF00156 Phosphoribosyl transferase domain AGREI_1895 PF00106 short chain dehydrogenase AGREI_1896 PF01053 Cys/Met metabolism PLP-dependent enzyme AGREI_1897 PF00561 alpha/beta hydrolase fold AGREI_1900 PF00072 Response regulator receiver domain AGREI_1900 PF00196 Bacterial regulatory proteins, luxR family AGREI_1904 PF03853 YjeF-related protein N-terminus AGREI_1904 PF01256 Carbohydrate kinase AGREI_1905 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AGREI_1906 PF01595 Cyclin M transmembrane N-terminal domain AGREI_1906 PF00571 CBS domain AGREI_1907 PF01595 Cyclin M transmembrane N-terminal domain AGREI_1907 PF03471 Transporter associated domain AGREI_1907 PF00571 CBS domain AGREI_1908 PF00478 IMP dehydrogenase / GMP reductase domain AGREI_1908 PF00571 CBS domain AGREI_1909 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AGREI_1909 PF00676 Dehydrogenase E1 component AGREI_1909 PF16078 2-oxoglutarate dehydrogenase N-terminus AGREI_1909 PF16870 2-oxoglutarate dehydrogenase C-terminal AGREI_1909 PF02779 Transketolase, pyrimidine binding domain AGREI_1911 PF08281 Sigma-70, region 4 AGREI_1911 PF04542 Sigma-70 region 2 AGREI_1912 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AGREI_1913 PF03193 RsgA GTPase AGREI_1914 PF00459 Inositol monophosphatase family AGREI_1915 PF00311 Phosphoenolpyruvate carboxylase AGREI_1917 PF16485 Protealysin propeptide AGREI_1917 PF01447 Thermolysin metallopeptidase, catalytic domain AGREI_1917 PF02868 Thermolysin metallopeptidase, alpha-helical domain AGREI_1919 PF13439 Glycosyltransferase Family 4 AGREI_1919 PF00534 Glycosyl transferases group 1 AGREI_1920 PF02585 GlcNAc-PI de-N-acetylase AGREI_1923 PF01668 SmpB protein AGREI_1924 PF18075 FtsX extracellular domain AGREI_1924 PF02687 FtsX-like permease family AGREI_1925 PF00005 ABC transporter AGREI_1926 PF00472 RF-1 domain AGREI_1926 PF03462 PCRF domain AGREI_1928 PF07690 Major Facilitator Superfamily AGREI_1935 PF00437 Type II/IV secretion system protein AGREI_1936 PF12704 MacB-like periplasmic core domain AGREI_1936 PF02687 FtsX-like permease family AGREI_1936 PF00005 ABC transporter AGREI_1937 PF00005 ABC transporter AGREI_1938 PF07730 Histidine kinase AGREI_1939 PF00072 Response regulator receiver domain AGREI_1939 PF00196 Bacterial regulatory proteins, luxR family AGREI_1940 PF09335 SNARE associated Golgi protein AGREI_1941 PF02938 GAD domain AGREI_1941 PF00152 tRNA synthetases class II (D, K and N) AGREI_1941 PF01336 OB-fold nucleic acid binding domain AGREI_1942 PF01545 Cation efflux family AGREI_1943 PF01725 Ham1 family AGREI_1944 PF01138 3' exoribonuclease family, domain 1 AGREI_1944 PF03725 3' exoribonuclease family, domain 2 AGREI_1945 PF01177 Asp/Glu/Hydantoin racemase AGREI_1946 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AGREI_1946 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AGREI_1949 PF00005 ABC transporter AGREI_1949 PF13732 Domain of unknown function (DUF4162) AGREI_1950 PF00132 Bacterial transferase hexapeptide (six repeats) AGREI_1950 PF12804 MobA-like NTP transferase domain AGREI_1951 PF01061 ABC-2 type transporter AGREI_1952 PF00005 ABC transporter AGREI_1955 PF07690 Major Facilitator Superfamily AGREI_1956 PF00245 Alkaline phosphatase AGREI_1958 PF05175 Methyltransferase small domain AGREI_1958 PF17827 PrmC N-terminal domain AGREI_1959 PF00248 Aldo/keto reductase family AGREI_1961 PF07690 Major Facilitator Superfamily AGREI_1962 PF00296 Luciferase-like monooxygenase AGREI_1963 PF02515 CoA-transferase family III AGREI_1972 PF13180 PDZ domain AGREI_1976 PF00155 Aminotransferase class I and II AGREI_1978 PF00795 Carbon-nitrogen hydrolase AGREI_1979 PF00480 ROK family AGREI_1980 PF16874 Glycosyl hydrolase family 36 C-terminal domain AGREI_1980 PF16875 Glycosyl hydrolase family 36 N-terminal domain AGREI_1981 PF01547 Bacterial extracellular solute-binding protein AGREI_1982 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1983 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_1984 PF00128 Alpha amylase, catalytic domain AGREI_1984 PF16657 Maltogenic Amylase, C-terminal domain AGREI_1985 PF03972 MmgE/PrpD family AGREI_1987 PF00440 Bacterial regulatory proteins, tetR family AGREI_1987 PF17926 Tetracyclin repressor-like, C-terminal domain AGREI_1988 PF07690 Major Facilitator Superfamily AGREI_1989 PF01263 Aldose 1-epimerase AGREI_1990 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AGREI_1990 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AGREI_1991 PF00230 Major intrinsic protein AGREI_1992 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AGREI_1992 PF01266 FAD dependent oxidoreductase AGREI_1995 PF02617 ATP-dependent Clp protease adaptor protein ClpS AGREI_2001 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2004 PF00356 Bacterial regulatory proteins, lacI family AGREI_2005 PF03699 Uncharacterised protein family (UPF0182) AGREI_2006 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_2006 PF05362 Lon protease (S16) C-terminal proteolytic domain AGREI_2006 PF02190 ATP-dependent protease La (LON) substrate-binding domain AGREI_2009 PF00570 HRDC domain AGREI_2009 PF13361 UvrD-like helicase C-terminal domain AGREI_2009 PF00580 UvrD/REP helicase N-terminal domain AGREI_2010 PF00293 NUDIX domain AGREI_2010 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain AGREI_2010 PF09297 NADH pyrophosphatase zinc ribbon domain AGREI_2012 PF13361 UvrD-like helicase C-terminal domain AGREI_2012 PF00580 UvrD/REP helicase N-terminal domain AGREI_2016 PF00266 Aminotransferase class-V AGREI_2018 PF00270 DEAD/DEAH box helicase AGREI_2018 PF00271 Helicase conserved C-terminal domain AGREI_2019 PF02811 PHP domain AGREI_2020 PF05195 Aminopeptidase P, N-terminal domain AGREI_2020 PF00557 Metallopeptidase family M24 AGREI_2022 PF01769 Divalent cation transporter AGREI_2022 PF00571 CBS domain AGREI_2022 PF03448 MgtE intracellular N domain AGREI_2024 PF10609 NUBPL iron-transfer P-loop NTPase AGREI_2024 PF01883 Iron-sulfur cluster assembly protein AGREI_2026 PF00753 Metallo-beta-lactamase superfamily AGREI_2029 PF00892 EamA-like transporter family AGREI_2032 PF02416 mttA/Hcf106 family AGREI_2033 PF01596 O-methyltransferase AGREI_2036 PF01546 Peptidase family M20/M25/M40 AGREI_2036 PF07687 Peptidase dimerisation domain AGREI_2037 PF14789 Tetrahydrodipicolinate N-succinyltransferase middle AGREI_2037 PF14602 Hexapeptide repeat of succinyl-transferase AGREI_2038 PF01791 DeoC/LacD family aldolase AGREI_2039 PF00285 Citrate synthase, C-terminal domain AGREI_2040 PF00155 Aminotransferase class I and II AGREI_2041 PF00037 4Fe-4S binding domain AGREI_2043 PF03239 Iron permease FTR1 family AGREI_2044 PF13473 Cupredoxin-like domain AGREI_2044 PF09375 Imelysin AGREI_2045 PF04261 Dyp-type peroxidase family AGREI_2045 PF10518 TAT (twin-arginine translocation) pathway signal sequence AGREI_2046 PF03144 Elongation factor Tu domain 2 AGREI_2046 PF14492 Elongation Factor G, domain II AGREI_2046 PF00009 Elongation factor Tu GTP binding domain AGREI_2046 PF00679 Elongation factor G C-terminus AGREI_2047 PF00005 ABC transporter AGREI_2047 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_2048 PF12911 N-terminal TM domain of oligopeptide transport permease C AGREI_2048 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2049 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2050 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AGREI_2052 PF08534 Redoxin AGREI_2054 PF02347 Glycine cleavage system P-protein AGREI_2055 PF01597 Glycine cleavage H-protein AGREI_2056 PF08669 Glycine cleavage T-protein C-terminal barrel domain AGREI_2056 PF01571 Aminomethyltransferase folate-binding domain AGREI_2060 PF00005 ABC transporter AGREI_2060 PF12848 ABC transporter AGREI_2061 PF07885 Ion channel AGREI_2062 PF00561 alpha/beta hydrolase fold AGREI_2063 PF06071 Protein of unknown function (DUF933) AGREI_2063 PF01926 50S ribosome-binding GTPase AGREI_2065 PF00171 Aldehyde dehydrogenase family AGREI_2066 PF02646 RmuC family AGREI_2067 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AGREI_2068 PF01116 Fructose-bisphosphate aldolase class-II AGREI_2070 PF02401 LytB protein AGREI_2071 PF02601 Exonuclease VII, large subunit AGREI_2071 PF13742 OB-fold nucleic acid binding domain AGREI_2072 PF02609 Exonuclease VII small subunit AGREI_2074 PF00484 Carbonic anhydrase AGREI_2075 PF10415 Fumarase C C-terminus AGREI_2075 PF00206 Lyase AGREI_2077 PF02562 PhoH-like protein AGREI_2077 PF13638 PIN domain AGREI_2079 PF01255 Putative undecaprenyl diphosphate synthase AGREI_2080 PF03006 Haemolysin-III related AGREI_2082 PF02585 GlcNAc-PI de-N-acetylase AGREI_2084 PF03449 Transcription elongation factor, N-terminal AGREI_2084 PF01272 Transcription elongation factor, GreA/GreB, C-term AGREI_2086 PF13291 ACT domain AGREI_2086 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_2087 PF01594 AI-2E family transporter AGREI_2088 PF08402 TOBE domain AGREI_2088 PF00005 ABC transporter AGREI_2092 PF06224 Winged helix DNA-binding domain AGREI_2093 PF01435 Peptidase family M48 AGREI_2094 PF04011 LemA family AGREI_2099 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AGREI_2100 PF16124 RecQ zinc-binding AGREI_2100 PF09382 RQC domain AGREI_2100 PF00270 DEAD/DEAH box helicase AGREI_2100 PF00271 Helicase conserved C-terminal domain AGREI_2100 PF00570 HRDC domain AGREI_2101 PF13286 Phosphohydrolase-associated domain AGREI_2101 PF01966 HD domain AGREI_2103 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_2103 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_2105 PF00912 Transglycosylase AGREI_2105 PF00905 Penicillin binding protein transpeptidase domain AGREI_2106 PF03176 MMPL family AGREI_2109 PF00128 Alpha amylase, catalytic domain AGREI_2111 PF00082 Subtilase family AGREI_2114 PF03952 Enolase, N-terminal domain AGREI_2114 PF00113 Enolase, C-terminal TIM barrel domain AGREI_2117 PF13393 Histidyl-tRNA synthetase AGREI_2118 PF03819 MazG nucleotide pyrophosphohydrolase domain AGREI_2120 PF17757 UvrB interaction domain AGREI_2120 PF03461 TRCF domain AGREI_2120 PF00271 Helicase conserved C-terminal domain AGREI_2120 PF00270 DEAD/DEAH box helicase AGREI_2120 PF02559 CarD-like/TRCF domain AGREI_2122 PF01195 Peptidyl-tRNA hydrolase AGREI_2123 PF14693 Ribosomal protein TL5, C-terminal domain AGREI_2123 PF01386 Ribosomal L25p family AGREI_2125 PF00892 EamA-like transporter family AGREI_2126 PF03466 LysR substrate binding domain AGREI_2126 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_2127 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AGREI_2127 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AGREI_2128 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AGREI_2128 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AGREI_2130 PF00462 Glutaredoxin AGREI_2131 PF14572 Phosphoribosyl synthetase-associated domain AGREI_2131 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AGREI_2132 PF12804 MobA-like NTP transferase domain AGREI_2132 PF00132 Bacterial transferase hexapeptide (six repeats) AGREI_2135 PF04954 Siderophore-interacting protein AGREI_2135 PF08021 Siderophore-interacting FAD-binding domain AGREI_2136 PF13091 PLD-like domain AGREI_2136 PF13396 Phospholipase_D-nuclease N-terminal AGREI_2137 PF00440 Bacterial regulatory proteins, tetR family AGREI_2138 PF00698 Acyl transferase domain AGREI_2138 PF14765 Polyketide synthase dehydratase AGREI_2138 PF00550 Phosphopantetheine attachment site AGREI_2138 PF08659 KR domain AGREI_2138 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_2138 PF16197 Ketoacyl-synthetase C-terminal extension AGREI_2138 PF00109 Beta-ketoacyl synthase, N-terminal domain AGREI_2138 PF02801 Beta-ketoacyl synthase, C-terminal domain AGREI_2139 PF08924 Domain of unknown function (DUF1906) AGREI_2139 PF01471 Putative peptidoglycan binding domain AGREI_2142 PF00764 Arginosuccinate synthase AGREI_2143 PF00005 ABC transporter AGREI_2143 PF12848 ABC transporter AGREI_2143 PF16326 ABC transporter C-terminal domain AGREI_2144 PF07687 Peptidase dimerisation domain AGREI_2144 PF01546 Peptidase family M20/M25/M40 AGREI_2145 PF00156 Phosphoribosyl transferase domain AGREI_2147 PF00005 ABC transporter AGREI_2148 PF00288 GHMP kinases N terminal domain AGREI_2148 PF08544 GHMP kinases C terminal AGREI_2149 PF01156 Inosine-uridine preferring nucleoside hydrolase AGREI_2150 PF02653 Branched-chain amino acid transport system / permease component AGREI_2151 PF02653 Branched-chain amino acid transport system / permease component AGREI_2152 PF00005 ABC transporter AGREI_2153 PF02608 ABC transporter substrate-binding protein PnrA-like AGREI_2154 PF00398 Ribosomal RNA adenine dimethylase AGREI_2155 PF01026 TatD related DNase AGREI_2156 PF08264 Anticodon-binding domain of tRNA AGREI_2156 PF09334 tRNA synthetases class I (M) AGREI_2157 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AGREI_2160 PF03601 Conserved hypothetical protein 698 AGREI_2163 PF00664 ABC transporter transmembrane region AGREI_2163 PF00005 ABC transporter AGREI_2164 PF00893 Small Multidrug Resistance protein AGREI_2166 PF08267 Cobalamin-independent synthase, N-terminal domain AGREI_2166 PF01717 Cobalamin-independent synthase, Catalytic domain AGREI_2168 PF00106 short chain dehydrogenase AGREI_2169 PF03315 Serine dehydratase beta chain AGREI_2169 PF03313 Serine dehydratase alpha chain AGREI_2172 PF00455 DeoR C terminal sensor domain AGREI_2172 PF08220 DeoR-like helix-turn-helix domain AGREI_2173 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AGREI_2173 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AGREI_2174 PF10509 Galactokinase galactose-binding signature AGREI_2174 PF08544 GHMP kinases C terminal AGREI_2174 PF00288 GHMP kinases N terminal domain AGREI_2175 PF03190 Protein of unknown function, DUF255 AGREI_2176 PF00248 Aldo/keto reductase family AGREI_2177 PF00221 Aromatic amino acid lyase AGREI_2178 PF00296 Luciferase-like monooxygenase AGREI_2179 PF00571 CBS domain AGREI_2179 PF00291 Pyridoxal-phosphate dependent enzyme AGREI_2182 PF02720 Domain of unknown function (DUF222) AGREI_2184 PF13419 Haloacid dehalogenase-like hydrolase AGREI_2186 PF00270 DEAD/DEAH box helicase AGREI_2186 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AGREI_2186 PF00271 Helicase conserved C-terminal domain AGREI_2186 PF04408 Helicase associated domain (HA2) AGREI_2186 PF11898 Domain of unknown function (DUF3418) AGREI_2188 PF01243 Pyridoxamine 5'-phosphate oxidase AGREI_2188 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AGREI_2189 PF00232 Glycosyl hydrolase family 1 AGREI_2190 PF00561 alpha/beta hydrolase fold AGREI_2191 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_2191 PF00005 ABC transporter AGREI_2192 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2193 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2194 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AGREI_2195 PF00356 Bacterial regulatory proteins, lacI family AGREI_2196 PF00248 Aldo/keto reductase family AGREI_2198 PF00248 Aldo/keto reductase family AGREI_2199 PF00285 Citrate synthase, C-terminal domain AGREI_2200 PF02735 Ku70/Ku80 beta-barrel domain AGREI_2201 PF04679 ATP dependent DNA ligase C terminal region AGREI_2201 PF01068 ATP dependent DNA ligase domain AGREI_2201 PF13298 DNA polymerase Ligase (LigD) AGREI_2204 PF00106 short chain dehydrogenase AGREI_2206 PF13193 AMP-binding enzyme C-terminal domain AGREI_2206 PF00501 AMP-binding enzyme AGREI_2215 PF00271 Helicase conserved C-terminal domain AGREI_2215 PF08148 DSHCT (NUC185) domain AGREI_2215 PF00270 DEAD/DEAH box helicase AGREI_2219 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_2219 PF14579 Helix-hairpin-helix motif AGREI_2219 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_2219 PF02811 PHP domain AGREI_2220 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AGREI_2220 PF06827 Zinc finger found in FPG and IleRS AGREI_2223 PF17863 AAA lid domain AGREI_2223 PF01078 Magnesium chelatase, subunit ChlI AGREI_2234 PF00483 Nucleotidyl transferase AGREI_2238 PF01741 Large-conductance mechanosensitive channel, MscL AGREI_2241 PF00296 Luciferase-like monooxygenase AGREI_2243 PF02585 GlcNAc-PI de-N-acetylase AGREI_2245 PF05532 CsbD-like AGREI_2248 PF00005 ABC transporter AGREI_2249 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2250 PF00497 Bacterial extracellular solute-binding proteins, family 3 AGREI_2251 PF04055 Radical SAM superfamily AGREI_2252 PF00743 Flavin-binding monooxygenase-like AGREI_2254 PF13439 Glycosyltransferase Family 4 AGREI_2255 PF17678 Glycosyl hydrolase family 92 N-terminal domain AGREI_2255 PF07971 Glycosyl hydrolase family 92 AGREI_2257 PF01032 FecCD transport family AGREI_2258 PF01032 FecCD transport family AGREI_2259 PF00005 ABC transporter AGREI_2260 PF04542 Sigma-70 region 2 AGREI_2260 PF04545 Sigma-70, region 4 AGREI_2262 PF01380 SIS domain AGREI_2263 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2264 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2265 PF00005 ABC transporter AGREI_2272 PF03793 PASTA domain AGREI_2272 PF00069 Protein kinase domain AGREI_2282 PF18357 Diphteria toxin repressor SH3 domain AGREI_2282 PF02742 Iron dependent repressor, metal binding and dimerisation domain AGREI_2282 PF01325 Iron dependent repressor, N-terminal DNA binding domain AGREI_2283 PF00266 Aminotransferase class-V AGREI_2284 PF11228 Protein of unknown function (DUF3027) AGREI_2285 PF00313 'Cold-shock' DNA-binding domain AGREI_2290 PF00072 Response regulator receiver domain AGREI_2290 PF00486 Transcriptional regulatory protein, C terminal AGREI_2291 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2291 PF00512 His Kinase A (phospho-acceptor) domain AGREI_2291 PF00672 HAMP domain AGREI_2293 PF00118 TCP-1/cpn60 chaperonin family AGREI_2294 PF00313 'Cold-shock' DNA-binding domain AGREI_2297 PF13673 Acetyltransferase (GNAT) domain AGREI_2298 PF01641 SelR domain AGREI_2300 PF07690 Major Facilitator Superfamily AGREI_2303 PF17912 MalK OB fold domain AGREI_2303 PF00005 ABC transporter AGREI_2305 PF08032 RNA 2'-O ribose methyltransferase substrate binding AGREI_2305 PF00588 SpoU rRNA Methylase family AGREI_2306 PF01406 tRNA synthetases class I (C) catalytic domain AGREI_2306 PF09190 DALR domain AGREI_2307 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AGREI_2307 PF02542 YgbB family AGREI_2308 PF02559 CarD-like/TRCF domain AGREI_2310 PF00072 Response regulator receiver domain AGREI_2310 PF00486 Transcriptional regulatory protein, C terminal AGREI_2311 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2311 PF00512 His Kinase A (phospho-acceptor) domain AGREI_2312 PF01895 PhoU domain AGREI_2313 PF00300 Histidine phosphatase superfamily (branch 1) AGREI_2316 PF08669 Glycine cleavage T-protein C-terminal barrel domain AGREI_2316 PF01571 Aminomethyltransferase folate-binding domain AGREI_2317 PF08768 Domain of unknown function (DUF1794) AGREI_2320 PF00486 Transcriptional regulatory protein, C terminal AGREI_2321 PF00583 Acetyltransferase (GNAT) family AGREI_2322 PF17941 Polyphosphate kinase C-terminal domain 1 AGREI_2322 PF13089 Polyphosphate kinase N-terminal domain AGREI_2322 PF02503 Polyphosphate kinase middle domain AGREI_2322 PF13090 Polyphosphate kinase C-terminal domain 2 AGREI_2324 PF12849 PBP superfamily domain AGREI_2325 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2326 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2327 PF00005 ABC transporter AGREI_2329 PF04542 Sigma-70 region 2 AGREI_2329 PF04545 Sigma-70, region 4 AGREI_2330 PF02709 N-terminal domain of galactosyltransferase AGREI_2330 PF00535 Glycosyl transferase family 2 AGREI_2331 PF03033 Glycosyltransferase family 28 N-terminal domain AGREI_2331 PF04101 Glycosyltransferase family 28 C-terminal domain AGREI_2332 PF00534 Glycosyl transferases group 1 AGREI_2332 PF13439 Glycosyltransferase Family 4 AGREI_2335 PF02674 Colicin V production protein AGREI_2340 PF01263 Aldose 1-epimerase AGREI_2341 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AGREI_2341 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AGREI_2342 PF00464 Serine hydroxymethyltransferase AGREI_2344 PF07690 Major Facilitator Superfamily AGREI_2346 PF00551 Formyl transferase AGREI_2348 PF01979 Amidohydrolase family AGREI_2349 PF00180 Isocitrate/isopropylmalate dehydrogenase AGREI_2353 PF00005 ABC transporter AGREI_2353 PF00664 ABC transporter transmembrane region AGREI_2354 PF00664 ABC transporter transmembrane region AGREI_2354 PF00005 ABC transporter AGREI_2357 PF01808 AICARFT/IMPCHase bienzyme AGREI_2357 PF02142 MGS-like domain AGREI_2358 PF00551 Formyl transferase AGREI_2361 PF02629 CoA binding domain AGREI_2361 PF00549 CoA-ligase AGREI_2362 PF00549 CoA-ligase AGREI_2362 PF08442 ATP-grasp domain AGREI_2365 PF09995 Uncharacterized protein conserved in bacteria (DUF2236) AGREI_2367 PF13361 UvrD-like helicase C-terminal domain AGREI_2367 PF00580 UvrD/REP helicase N-terminal domain AGREI_2368 PF03009 Glycerophosphoryl diester phosphodiesterase family AGREI_2371 PF00117 Glutamine amidotransferase class-I AGREI_2371 PF00958 GMP synthase C terminal domain AGREI_2371 PF02540 NAD synthase AGREI_2372 PF12823 Domain of unknown function (DUF3817) AGREI_2374 PF00999 Sodium/hydrogen exchanger family AGREI_2376 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AGREI_2376 PF01266 FAD dependent oxidoreductase AGREI_2377 PF00478 IMP dehydrogenase / GMP reductase domain AGREI_2378 PF00478 IMP dehydrogenase / GMP reductase domain AGREI_2378 PF00571 CBS domain AGREI_2379 PF02653 Branched-chain amino acid transport system / permease component AGREI_2380 PF11862 Domain of unknown function (DUF3382) AGREI_2380 PF02653 Branched-chain amino acid transport system / permease component AGREI_2381 PF12399 Branched-chain amino acid ATP-binding cassette transporter AGREI_2381 PF00005 ABC transporter AGREI_2382 PF00005 ABC transporter AGREI_2384 PF00892 EamA-like transporter family AGREI_2385 PF00166 Chaperonin 10 Kd subunit AGREI_2389 PF00814 Glycoprotease family AGREI_2390 PF00583 Acetyltransferase (GNAT) family AGREI_2391 PF00814 Glycoprotease family AGREI_2392 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AGREI_2393 PF01168 Alanine racemase, N-terminal domain AGREI_2393 PF00842 Alanine racemase, C-terminal domain AGREI_2394 PF01168 Alanine racemase, N-terminal domain AGREI_2394 PF00842 Alanine racemase, C-terminal domain AGREI_2395 PF01648 4'-phosphopantetheinyl transferase superfamily AGREI_2396 PF01380 SIS domain AGREI_2397 PF00485 Phosphoribulokinase / Uridine kinase family AGREI_2398 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AGREI_2398 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AGREI_2398 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AGREI_2398 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AGREI_2399 PF00380 Ribosomal protein S9/S16 AGREI_2400 PF00572 Ribosomal protein L13 AGREI_2401 PF01416 tRNA pseudouridine synthase AGREI_2402 PF01196 Ribosomal protein L17 AGREI_2403 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AGREI_2403 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AGREI_2403 PF01000 RNA polymerase Rpb3/RpoA insert domain AGREI_2404 PF00411 Ribosomal protein S11 AGREI_2405 PF00416 Ribosomal protein S13/S18 AGREI_2406 PF00444 Ribosomal protein L36 AGREI_2407 PF01176 Translation initiation factor 1A / IF-1 AGREI_2409 PF08125 Mannitol dehydrogenase C-terminal domain AGREI_2409 PF01232 Mannitol dehydrogenase Rossmann domain AGREI_2412 PF05524 PEP-utilising enzyme, N-terminal AGREI_2412 PF00391 PEP-utilising enzyme, mobile domain AGREI_2412 PF02896 PEP-utilising enzyme, TIM barrel domain AGREI_2413 PF00381 PTS HPr component phosphorylation site AGREI_2415 PF00874 PRD domain AGREI_2415 PF03123 CAT RNA binding domain AGREI_2416 PF00557 Metallopeptidase family M24 AGREI_2418 PF00344 SecY translocase AGREI_2420 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AGREI_2421 PF00327 Ribosomal protein L30p/L7e AGREI_2422 PF00333 Ribosomal protein S5, N-terminal domain AGREI_2422 PF03719 Ribosomal protein S5, C-terminal domain AGREI_2423 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AGREI_2424 PF00347 Ribosomal protein L6 AGREI_2425 PF00410 Ribosomal protein S8 AGREI_2426 PF00673 ribosomal L5P family C-terminus AGREI_2426 PF00281 Ribosomal protein L5 AGREI_2427 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AGREI_2428 PF00238 Ribosomal protein L14p/L23e AGREI_2429 PF00366 Ribosomal protein S17 AGREI_2430 PF00831 Ribosomal L29 protein AGREI_2431 PF00252 Ribosomal protein L16p/L10e AGREI_2433 PF00189 Ribosomal protein S3, C-terminal domain AGREI_2433 PF07650 KH domain AGREI_2434 PF00237 Ribosomal protein L22p/L17e AGREI_2435 PF00203 Ribosomal protein S19 AGREI_2436 PF03947 Ribosomal Proteins L2, C-terminal domain AGREI_2436 PF00181 Ribosomal Proteins L2, RNA binding domain AGREI_2437 PF00276 Ribosomal protein L23 AGREI_2438 PF00573 Ribosomal protein L4/L1 family AGREI_2439 PF00297 Ribosomal protein L3 AGREI_2440 PF00338 Ribosomal protein S10p/S20e AGREI_2444 PF03143 Elongation factor Tu C-terminal domain AGREI_2444 PF00009 Elongation factor Tu GTP binding domain AGREI_2444 PF03144 Elongation factor Tu domain 2 AGREI_2446 PF03764 Elongation factor G, domain IV AGREI_2446 PF14492 Elongation Factor G, domain II AGREI_2446 PF00679 Elongation factor G C-terminus AGREI_2446 PF03144 Elongation factor Tu domain 2 AGREI_2446 PF00009 Elongation factor Tu GTP binding domain AGREI_2447 PF00177 Ribosomal protein S7p/S5e AGREI_2448 PF00164 Ribosomal protein S12/S23 AGREI_2454 PF07726 ATPase family associated with various cellular activities (AAA) AGREI_2454 PF17863 AAA lid domain AGREI_2456 PF00069 Protein kinase domain AGREI_2456 PF14032 PknH-like extracellular domain AGREI_2462 PF05000 RNA polymerase Rpb1, domain 4 AGREI_2462 PF04983 RNA polymerase Rpb1, domain 3 AGREI_2462 PF00623 RNA polymerase Rpb1, domain 2 AGREI_2462 PF04997 RNA polymerase Rpb1, domain 1 AGREI_2462 PF04998 RNA polymerase Rpb1, domain 5 AGREI_2463 PF04565 RNA polymerase Rpb2, domain 3 AGREI_2463 PF04563 RNA polymerase beta subunit AGREI_2463 PF04561 RNA polymerase Rpb2, domain 2 AGREI_2463 PF10385 RNA polymerase beta subunit external 1 domain AGREI_2463 PF04560 RNA polymerase Rpb2, domain 7 AGREI_2463 PF00562 RNA polymerase Rpb2, domain 6 AGREI_2465 PF07995 Glucose / Sorbosone dehydrogenase AGREI_2470 PF01594 AI-2E family transporter AGREI_2475 PF00270 DEAD/DEAH box helicase AGREI_2475 PF00271 Helicase conserved C-terminal domain AGREI_2478 PF00270 DEAD/DEAH box helicase AGREI_2478 PF08494 DEAD/H associated AGREI_2478 PF00271 Helicase conserved C-terminal domain AGREI_2479 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AGREI_2479 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AGREI_2480 PF02583 Metal-sensitive transcriptional repressor AGREI_2482 PF04073 Aminoacyl-tRNA editing domain AGREI_2484 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_2484 PF03466 LysR substrate binding domain AGREI_2489 PF04075 F420H(2)-dependent quinone reductase AGREI_2492 PF00892 EamA-like transporter family AGREI_2493 PF02913 FAD linked oxidases, C-terminal domain AGREI_2493 PF01565 FAD binding domain AGREI_2499 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_2499 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_2502 PF00356 Bacterial regulatory proteins, lacI family AGREI_2503 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2504 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2506 PF08533 Beta-galactosidase C-terminal domain AGREI_2506 PF08532 Beta-galactosidase trimerisation domain AGREI_2506 PF02449 Beta-galactosidase AGREI_2507 PF07745 Glycosyl hydrolase family 53 AGREI_2509 PF00356 Bacterial regulatory proteins, lacI family AGREI_2510 PF08244 Glycosyl hydrolases family 32 C terminal AGREI_2510 PF00251 Glycosyl hydrolases family 32 N-terminal domain AGREI_2513 PF02435 Levansucrase/Invertase AGREI_2514 PF01370 NAD dependent epimerase/dehydratase family AGREI_2515 PF00356 Bacterial regulatory proteins, lacI family AGREI_2516 PF00710 Asparaginase, N-terminal AGREI_2516 PF17763 Glutaminase/Asparaginase C-terminal domain AGREI_2517 PF01522 Polysaccharide deacetylase AGREI_2518 PF07690 Major Facilitator Superfamily AGREI_2538 PF13340 Putative transposase of IS4/5 family (DUF4096) AGREI_2551 PF01022 Bacterial regulatory protein, arsR family AGREI_2552 PF02796 Helix-turn-helix domain of resolvase AGREI_2552 PF00239 Resolvase, N terminal domain AGREI_2554 PF00239 Resolvase, N terminal domain AGREI_2554 PF02796 Helix-turn-helix domain of resolvase AGREI_2557 PF03466 LysR substrate binding domain AGREI_2557 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_2560 PF01022 Bacterial regulatory protein, arsR family AGREI_2564 PF00230 Major intrinsic protein AGREI_2565 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_2565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_2567 PF01790 Prolipoprotein diacylglyceryl transferase AGREI_2570 PF16916 Dimerisation domain of Zinc Transporter AGREI_2570 PF01545 Cation efflux family AGREI_2576 PF01252 Signal peptidase (SPase) II AGREI_2582 PF01551 Peptidase family M23 AGREI_2582 PF10145 Phage-related minor tail protein AGREI_2582 PF01464 Transglycosylase SLT domain AGREI_2587 PF05425 Copper resistance protein D AGREI_2587 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AGREI_2589 PF00535 Glycosyl transferase family 2 AGREI_2589 PF00795 Carbon-nitrogen hydrolase AGREI_2590 PF01022 Bacterial regulatory protein, arsR family AGREI_2591 PF01545 Cation efflux family AGREI_2592 PF02683 Cytochrome C biogenesis protein transmembrane region AGREI_2593 PF00578 AhpC/TSA family AGREI_2601 PF02899 Phage integrase, N-terminal SAM-like domain AGREI_2601 PF00589 Phage integrase family AGREI_2605 PF18073 Rubredoxin metal binding domain AGREI_2605 PF06745 KaiC AGREI_2606 PF00135 Carboxylesterase family AGREI_2612 PF00171 Aldehyde dehydrogenase family AGREI_2615 PF00293 NUDIX domain AGREI_2616 PF00583 Acetyltransferase (GNAT) family AGREI_2619 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_2619 PF07724 AAA domain (Cdc48 subfamily) AGREI_2619 PF17871 AAA lid domain AGREI_2619 PF02861 Clp amino terminal domain, pathogenicity island component AGREI_2619 PF10431 C-terminal, D2-small domain, of ClpB protein AGREI_2622 PF02678 Pirin AGREI_2622 PF05726 Pirin C-terminal cupin domain AGREI_2623 PF01036 Bacteriorhodopsin-like protein AGREI_2626 PF13091 PLD-like domain AGREI_2626 PF13396 Phospholipase_D-nuclease N-terminal AGREI_2629 PF00152 tRNA synthetases class II (D, K and N) AGREI_2629 PF01336 OB-fold nucleic acid binding domain AGREI_2632 PF02569 Pantoate-beta-alanine ligase AGREI_2637 PF02152 Dihydroneopterin aldolase AGREI_2638 PF00809 Pterin binding enzyme AGREI_2639 PF01227 GTP cyclohydrolase I AGREI_2640 PF17862 AAA+ lid domain AGREI_2640 PF01434 Peptidase family M41 AGREI_2640 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_2641 PF00156 Phosphoribosyl transferase domain AGREI_2642 PF01171 PP-loop family AGREI_2642 PF09179 TilS substrate binding domain AGREI_2643 PF00719 Inorganic pyrophosphatase AGREI_2644 PF01551 Peptidase family M23 AGREI_2644 PF01476 LysM domain AGREI_2644 PF08525 Opacity-associated protein A N-terminal motif AGREI_2645 PF00300 Histidine phosphatase superfamily (branch 1) AGREI_2649 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) AGREI_2656 PF04228 Putative neutral zinc metallopeptidase AGREI_2657 PF02770 Acyl-CoA dehydrogenase, middle domain AGREI_2657 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AGREI_2657 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AGREI_2658 PF03079 ARD/ARD' family AGREI_2660 PF00005 ABC transporter AGREI_2661 PF02653 Branched-chain amino acid transport system / permease component AGREI_2662 PF01636 Phosphotransferase enzyme family AGREI_2664 PF03364 Polyketide cyclase / dehydrase and lipid transport AGREI_2665 PF00596 Class II Aldolase and Adducin N-terminal domain AGREI_2665 PF01008 Initiation factor 2 subunit family AGREI_2667 PF01636 Phosphotransferase enzyme family AGREI_2668 PF01008 Initiation factor 2 subunit family AGREI_2670 PF00561 alpha/beta hydrolase fold AGREI_2671 PF00072 Response regulator receiver domain AGREI_2671 PF00196 Bacterial regulatory proteins, luxR family AGREI_2672 PF07730 Histidine kinase AGREI_2672 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2674 PF00005 ABC transporter AGREI_2677 PF00501 AMP-binding enzyme AGREI_2677 PF01553 Acyltransferase AGREI_2678 PF00270 DEAD/DEAH box helicase AGREI_2678 PF00271 Helicase conserved C-terminal domain AGREI_2678 PF00570 HRDC domain AGREI_2678 PF09382 RQC domain AGREI_2678 PF16124 RecQ zinc-binding AGREI_2682 PF00664 ABC transporter transmembrane region AGREI_2682 PF00005 ABC transporter AGREI_2683 PF00664 ABC transporter transmembrane region AGREI_2683 PF00005 ABC transporter AGREI_2685 PF00271 Helicase conserved C-terminal domain AGREI_2685 PF00270 DEAD/DEAH box helicase AGREI_2686 PF00873 AcrB/AcrD/AcrF family AGREI_2688 PF00155 Aminotransferase class I and II AGREI_2690 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AGREI_2690 PF03129 Anticodon binding domain AGREI_2692 PF13520 Amino acid permease AGREI_2695 PF17827 PrmC N-terminal domain AGREI_2695 PF05175 Methyltransferase small domain AGREI_2696 PF03466 LysR substrate binding domain AGREI_2696 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_2697 PF01810 LysE type translocator AGREI_2700 PF02843 Phosphoribosylglycinamide synthetase, C domain AGREI_2700 PF02844 Phosphoribosylglycinamide synthetase, N domain AGREI_2700 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AGREI_2701 PF01259 SAICAR synthetase AGREI_2704 PF02769 AIR synthase related protein, C-terminal domain AGREI_2704 PF00586 AIR synthase related protein, N-terminal domain AGREI_2706 PF08007 Cupin superfamily protein AGREI_2708 PF00156 Phosphoribosyl transferase domain AGREI_2711 PF01032 FecCD transport family AGREI_2712 PF00005 ABC transporter AGREI_2714 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AGREI_2715 PF00501 AMP-binding enzyme AGREI_2715 PF13193 AMP-binding enzyme C-terminal domain AGREI_2716 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AGREI_2718 PF01592 NifU-like N terminal domain AGREI_2719 PF00266 Aminotransferase class-V AGREI_2720 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AGREI_2720 PF00586 AIR synthase related protein, N-terminal domain AGREI_2720 PF02769 AIR synthase related protein, C-terminal domain AGREI_2725 PF02153 Prephenate dehydrogenase AGREI_2725 PF01817 Chorismate mutase type II AGREI_2727 PF02566 OsmC-like protein AGREI_2729 PF00709 Adenylosuccinate synthetase AGREI_2736 PF00183 Hsp90 protein AGREI_2736 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2738 PF13426 PAS domain AGREI_2738 PF00672 HAMP domain AGREI_2738 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2738 PF00512 His Kinase A (phospho-acceptor) domain AGREI_2743 PF00072 Response regulator receiver domain AGREI_2743 PF00486 Transcriptional regulatory protein, C terminal AGREI_2744 PF01341 Glycosyl hydrolases family 6 AGREI_2744 PF00553 Cellulose binding domain AGREI_2745 PF00588 SpoU rRNA Methylase family AGREI_2745 PF08032 RNA 2'-O ribose methyltransferase substrate binding AGREI_2746 PF01566 Natural resistance-associated macrophage protein AGREI_2746 PF03358 NADPH-dependent FMN reductase AGREI_2748 PF13344 Haloacid dehalogenase-like hydrolase AGREI_2752 PF00156 Phosphoribosyl transferase domain AGREI_2755 PF01757 Acyltransferase family AGREI_2765 PF07690 Major Facilitator Superfamily AGREI_2766 PF07690 Major Facilitator Superfamily AGREI_2768 PF00999 Sodium/hydrogen exchanger family AGREI_2769 PF13419 Haloacid dehalogenase-like hydrolase AGREI_2772 PF01212 Beta-eliminating lyase AGREI_2774 PF00324 Amino acid permease AGREI_2775 PF07724 AAA domain (Cdc48 subfamily) AGREI_2775 PF17871 AAA lid domain AGREI_2775 PF00004 ATPase family associated with various cellular activities (AAA) AGREI_2775 PF10431 C-terminal, D2-small domain, of ClpB protein AGREI_2775 PF02861 Clp amino terminal domain, pathogenicity island component AGREI_2776 PF00271 Helicase conserved C-terminal domain AGREI_2776 PF00176 SNF2 family N-terminal domain AGREI_2776 PF12419 SNF2 Helicase protein AGREI_2777 PF00877 NlpC/P60 family AGREI_2780 PF00171 Aldehyde dehydrogenase family AGREI_2781 PF00202 Aminotransferase class-III AGREI_2782 PF01179 Copper amine oxidase, enzyme domain AGREI_2782 PF02727 Copper amine oxidase, N2 domain AGREI_2782 PF02728 Copper amine oxidase, N3 domain AGREI_2784 PF13520 Amino acid permease AGREI_2787 PF05175 Methyltransferase small domain AGREI_2790 PF00857 Isochorismatase family AGREI_2792 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AGREI_2793 PF13411 MerR HTH family regulatory protein AGREI_2794 PF00226 DnaJ domain AGREI_2794 PF01556 DnaJ C terminal domain AGREI_2794 PF00684 DnaJ central domain AGREI_2795 PF01025 GrpE AGREI_2796 PF00012 Hsp70 protein AGREI_2800 PF01040 UbiA prenyltransferase family AGREI_2801 PF01040 UbiA prenyltransferase family AGREI_2803 PF01593 Flavin containing amine oxidoreductase AGREI_2805 PF00348 Polyprenyl synthetase AGREI_2806 PF00293 NUDIX domain AGREI_2807 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AGREI_2807 PF13244 Domain of unknown function (DUF4040) AGREI_2807 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AGREI_2807 PF00361 Proton-conducting membrane transporter AGREI_2808 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AGREI_2809 PF00361 Proton-conducting membrane transporter AGREI_2811 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AGREI_2812 PF03334 Na+/H+ antiporter subunit AGREI_2813 PF00692 dUTPase AGREI_2814 PF04226 Transglycosylase associated protein AGREI_2815 PF00196 Bacterial regulatory proteins, luxR family AGREI_2815 PF00072 Response regulator receiver domain AGREI_2816 PF03306 Alpha-acetolactate decarboxylase AGREI_2817 PF01243 Pyridoxamine 5'-phosphate oxidase AGREI_2818 PF08532 Beta-galactosidase trimerisation domain AGREI_2818 PF08533 Beta-galactosidase C-terminal domain AGREI_2818 PF02449 Beta-galactosidase AGREI_2819 PF01301 Glycosyl hydrolases family 35 AGREI_2820 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AGREI_2822 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2823 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2825 PF00356 Bacterial regulatory proteins, lacI family AGREI_2832 PF07690 Major Facilitator Superfamily AGREI_2835 PF00072 Response regulator receiver domain AGREI_2836 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2836 PF00989 PAS fold AGREI_2836 PF17203 Single cache domain 3 AGREI_2836 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AGREI_2837 PF00375 Sodium:dicarboxylate symporter family AGREI_2838 PF00005 ABC transporter AGREI_2838 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_2839 PF00005 ABC transporter AGREI_2839 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AGREI_2840 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2840 PF12911 N-terminal TM domain of oligopeptide transport permease C AGREI_2841 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2842 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AGREI_2846 PF05195 Aminopeptidase P, N-terminal domain AGREI_2846 PF00557 Metallopeptidase family M24 AGREI_2847 PF01258 Prokaryotic dksA/traR C4-type zinc finger AGREI_2849 PF00171 Aldehyde dehydrogenase family AGREI_2850 PF02127 Aminopeptidase I zinc metalloprotease (M18) AGREI_2851 PF00392 Bacterial regulatory proteins, gntR family AGREI_2851 PF07729 FCD domain AGREI_2852 PF00561 alpha/beta hydrolase fold AGREI_2853 PF00324 Amino acid permease AGREI_2857 PF01047 MarR family AGREI_2859 PF00152 tRNA synthetases class II (D, K and N) AGREI_2859 PF02938 GAD domain AGREI_2859 PF01336 OB-fold nucleic acid binding domain AGREI_2861 PF06724 Domain of Unknown Function (DUF1206) AGREI_2862 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AGREI_2862 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AGREI_2863 PF00294 pfkB family carbohydrate kinase AGREI_2864 PF08220 DeoR-like helix-turn-helix domain AGREI_2864 PF00455 DeoR C terminal sensor domain AGREI_2865 PF09364 XFP N-terminal domain AGREI_2865 PF09363 XFP C-terminal domain AGREI_2865 PF03894 D-xylulose 5-phosphate/D-fructose 6-phosphate phosphoketolase AGREI_2866 PF01569 PAP2 superfamily AGREI_2867 PF00255 Glutathione peroxidase AGREI_2870 PF00440 Bacterial regulatory proteins, tetR family AGREI_2872 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_2872 PF16197 Ketoacyl-synthetase C-terminal extension AGREI_2872 PF00109 Beta-ketoacyl synthase, N-terminal domain AGREI_2872 PF02801 Beta-ketoacyl synthase, C-terminal domain AGREI_2872 PF00107 Zinc-binding dehydrogenase AGREI_2872 PF14765 Polyketide synthase dehydratase AGREI_2872 PF00698 Acyl transferase domain AGREI_2872 PF00550 Phosphopantetheine attachment site AGREI_2872 PF08659 KR domain AGREI_2873 PF00248 Aldo/keto reductase family AGREI_2874 PF00248 Aldo/keto reductase family AGREI_2875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AGREI_2875 PF03466 LysR substrate binding domain AGREI_2876 PF12697 Alpha/beta hydrolase family AGREI_2876 PF08241 Methyltransferase domain AGREI_2882 PF13476 AAA domain AGREI_2883 PF00149 Calcineurin-like phosphoesterase AGREI_2883 PF12320 Type 5 capsule protein repressor C-terminal domain AGREI_2885 PF01494 FAD binding domain AGREI_2886 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AGREI_2886 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AGREI_2897 PF03109 ABC1 family AGREI_2900 PF00860 Permease family AGREI_2903 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AGREI_2903 PF02542 YgbB family AGREI_2904 PF02634 FdhD/NarQ family AGREI_2905 PF00384 Molybdopterin oxidoreductase AGREI_2905 PF01568 Molydopterin dinucleotide binding domain AGREI_2906 PF01497 Periplasmic binding protein AGREI_2907 PF00005 ABC transporter AGREI_2908 PF01032 FecCD transport family AGREI_2916 PF00107 Zinc-binding dehydrogenase AGREI_2916 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_2919 PF04545 Sigma-70, region 4 AGREI_2919 PF04542 Sigma-70 region 2 AGREI_2920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AGREI_2920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AGREI_2921 PF13532 2OG-Fe(II) oxygenase superfamily AGREI_2922 PF00455 DeoR C terminal sensor domain AGREI_2922 PF08220 DeoR-like helix-turn-helix domain AGREI_2925 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2926 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2927 PF01116 Fructose-bisphosphate aldolase class-II AGREI_2930 PF00440 Bacterial regulatory proteins, tetR family AGREI_2930 PF08362 YcdC-like protein, C-terminal region AGREI_2931 PF00893 Small Multidrug Resistance protein AGREI_2932 PF00893 Small Multidrug Resistance protein AGREI_2933 PF02595 Glycerate kinase family AGREI_2934 PF00083 Sugar (and other) transporter AGREI_2935 PF00174 Oxidoreductase molybdopterin binding domain AGREI_2936 PF00175 Oxidoreductase NAD-binding domain AGREI_2936 PF00970 Oxidoreductase FAD-binding domain AGREI_2936 PF00042 Globin AGREI_2938 PF13545 Crp-like helix-turn-helix domain AGREI_2938 PF00027 Cyclic nucleotide-binding domain AGREI_2939 PF00072 Response regulator receiver domain AGREI_2939 PF00211 Adenylate and Guanylate cyclase catalytic domain AGREI_2943 PF10604 Polyketide cyclase / dehydrase and lipid transport AGREI_2944 PF00107 Zinc-binding dehydrogenase AGREI_2944 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_2945 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AGREI_2946 PF03932 CutC family AGREI_2948 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2949 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2951 PF00005 ABC transporter AGREI_2952 PF00480 ROK family AGREI_2954 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AGREI_2954 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AGREI_2956 PF02653 Branched-chain amino acid transport system / permease component AGREI_2957 PF00005 ABC transporter AGREI_2958 PF13407 Periplasmic binding protein domain AGREI_2960 PF00356 Bacterial regulatory proteins, lacI family AGREI_2963 PF12706 Beta-lactamase superfamily domain AGREI_2963 PF00753 Metallo-beta-lactamase superfamily AGREI_2964 PF03459 TOBE domain AGREI_2964 PF00005 ABC transporter AGREI_2966 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_2968 PF00356 Bacterial regulatory proteins, lacI family AGREI_2971 PF03600 Citrate transporter AGREI_2972 PF17203 Single cache domain 3 AGREI_2972 PF00989 PAS fold AGREI_2972 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AGREI_2972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_2973 PF00072 Response regulator receiver domain AGREI_2973 PF12431 Transcriptional regulator AGREI_2978 PF09278 MerR, DNA binding AGREI_2978 PF00376 MerR family regulatory protein AGREI_2981 PF00005 ABC transporter AGREI_2983 PF07859 alpha/beta hydrolase fold AGREI_2985 PF00145 C-5 cytosine-specific DNA methylase AGREI_2998 PF07690 Major Facilitator Superfamily AGREI_3000 PF00376 MerR family regulatory protein AGREI_3000 PF09278 MerR, DNA binding AGREI_3002 PF17926 Tetracyclin repressor-like, C-terminal domain AGREI_3002 PF00440 Bacterial regulatory proteins, tetR family AGREI_3003 PF00106 short chain dehydrogenase AGREI_3006 PF04185 Phosphoesterase family AGREI_3006 PF05506 Domain of unknown function (DUF756) AGREI_3016 PF13454 FAD-NAD(P)-binding AGREI_3018 PF07859 alpha/beta hydrolase fold AGREI_3023 PF00795 Carbon-nitrogen hydrolase AGREI_3028 PF13426 PAS domain AGREI_3028 PF08448 PAS fold AGREI_3028 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3028 PF00512 His Kinase A (phospho-acceptor) domain AGREI_3028 PF00072 Response regulator receiver domain AGREI_3030 PF02416 mttA/Hcf106 family AGREI_3031 PF00902 Sec-independent protein translocase protein (TatC) AGREI_3032 PF02416 mttA/Hcf106 family AGREI_3033 PF01590 GAF domain AGREI_3033 PF00360 Phytochrome region AGREI_3033 PF08446 PAS fold AGREI_3033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3033 PF00512 His Kinase A (phospho-acceptor) domain AGREI_3034 PF03328 HpcH/HpaI aldolase/citrate lyase family AGREI_3041 PF03780 Asp23 family, cell envelope-related function AGREI_3048 PF08220 DeoR-like helix-turn-helix domain AGREI_3048 PF00455 DeoR C terminal sensor domain AGREI_3051 PF13614 AAA domain AGREI_3053 PF04244 Deoxyribodipyrimidine photo-lyase-related protein AGREI_3061 PF00999 Sodium/hydrogen exchanger family AGREI_3065 PF00011 Hsp20/alpha crystallin family AGREI_3066 PF17755 UvrA DNA-binding domain AGREI_3070 PF07859 alpha/beta hydrolase fold AGREI_3071 PF03741 Integral membrane protein TerC family AGREI_3074 PF01451 Low molecular weight phosphotyrosine protein phosphatase AGREI_3078 PF01757 Acyltransferase family AGREI_3079 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AGREI_3080 PF01380 SIS domain AGREI_3081 PF00072 Response regulator receiver domain AGREI_3081 PF00196 Bacterial regulatory proteins, luxR family AGREI_3084 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AGREI_3084 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AGREI_3096 PF00342 Phosphoglucose isomerase AGREI_3097 PF01740 STAS domain AGREI_3097 PF00916 Sulfate permease family AGREI_3098 PF01593 Flavin containing amine oxidoreductase AGREI_3099 PF00005 ABC transporter AGREI_3100 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_3101 PF00497 Bacterial extracellular solute-binding proteins, family 3 AGREI_3106 PF01979 Amidohydrolase family AGREI_3107 PF05221 S-adenosyl-L-homocysteine hydrolase AGREI_3107 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AGREI_3108 PF00579 tRNA synthetases class I (W and Y) AGREI_3112 PF03814 Potassium-transporting ATPase A subunit AGREI_3114 PF02669 K+-transporting ATPase, c chain AGREI_3115 PF02702 Osmosensitive K+ channel His kinase sensor domain AGREI_3115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3115 PF13493 Domain of unknown function (DUF4118) AGREI_3116 PF00486 Transcriptional regulatory protein, C terminal AGREI_3116 PF00072 Response regulator receiver domain AGREI_3117 PF00107 Zinc-binding dehydrogenase AGREI_3117 PF08240 Alcohol dehydrogenase GroES-like domain AGREI_3122 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_3122 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_3129 PF00485 Phosphoribulokinase / Uridine kinase family AGREI_3136 PF01126 Heme oxygenase AGREI_3138 PF02445 Quinolinate synthetase A protein AGREI_3139 PF02910 Fumarate reductase flavoprotein C-term AGREI_3139 PF00890 FAD binding domain AGREI_3140 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AGREI_3140 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AGREI_3141 PF00266 Aminotransferase class-V AGREI_3142 PF05970 PIF1-like helicase AGREI_3144 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AGREI_3144 PF05425 Copper resistance protein D AGREI_3145 PF00216 Bacterial DNA-binding protein AGREI_3146 PF00253 Ribosomal protein S14p/S29e AGREI_3147 PF00471 Ribosomal protein L33 AGREI_3148 PF00830 Ribosomal L28 family AGREI_3152 PF00950 ABC 3 transport family AGREI_3153 PF00005 ABC transporter AGREI_3157 PF00561 alpha/beta hydrolase fold AGREI_3162 PF01757 Acyltransferase family AGREI_3176 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AGREI_3177 PF00106 short chain dehydrogenase AGREI_3179 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AGREI_3179 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AGREI_3181 PF01381 Helix-turn-helix AGREI_3183 PF00072 Response regulator receiver domain AGREI_3183 PF00196 Bacterial regulatory proteins, luxR family AGREI_3184 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3184 PF07730 Histidine kinase AGREI_3186 PF00005 ABC transporter AGREI_3189 PF00561 alpha/beta hydrolase fold AGREI_3191 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3191 PF00512 His Kinase A (phospho-acceptor) domain AGREI_3192 PF00072 Response regulator receiver domain AGREI_3192 PF00486 Transcriptional regulatory protein, C terminal AGREI_3197 PF02110 Hydroxyethylthiazole kinase family AGREI_3198 PF02581 Thiamine monophosphate synthase AGREI_3199 PF08543 Phosphomethylpyrimidine kinase AGREI_3199 PF02581 Thiamine monophosphate synthase AGREI_3199 PF03070 TENA/THI-4/PQQC family AGREI_3200 PF13302 Acetyltransferase (GNAT) domain AGREI_3203 PF00005 ABC transporter AGREI_3204 PF02653 Branched-chain amino acid transport system / permease component AGREI_3205 PF13407 Periplasmic binding protein domain AGREI_3206 PF00356 Bacterial regulatory proteins, lacI family AGREI_3207 PF00563 EAL domain AGREI_3214 PF00196 Bacterial regulatory proteins, luxR family AGREI_3214 PF00072 Response regulator receiver domain AGREI_3215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3215 PF07730 Histidine kinase AGREI_3220 PF01494 FAD binding domain AGREI_3223 PF00175 Oxidoreductase NAD-binding domain AGREI_3223 PF00111 2Fe-2S iron-sulfur cluster binding domain AGREI_3223 PF00970 Oxidoreductase FAD-binding domain AGREI_3224 PF02817 e3 binding domain AGREI_3224 PF00364 Biotin-requiring enzyme AGREI_3224 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AGREI_3225 PF02780 Transketolase, C-terminal domain AGREI_3225 PF02779 Transketolase, pyrimidine binding domain AGREI_3226 PF00676 Dehydrogenase E1 component AGREI_3227 PF00155 Aminotransferase class I and II AGREI_3238 PF00805 Pentapeptide repeats (8 copies) AGREI_3245 PF00356 Bacterial regulatory proteins, lacI family AGREI_3249 PF00005 ABC transporter AGREI_3251 PF00248 Aldo/keto reductase family AGREI_3252 PF00296 Luciferase-like monooxygenase AGREI_3255 PF02104 SURF1 family AGREI_3259 PF01475 Ferric uptake regulator family AGREI_3262 PF00248 Aldo/keto reductase family AGREI_3267 PF07690 Major Facilitator Superfamily AGREI_3268 PF16859 Tetracyclin repressor-like, C-terminal domain AGREI_3268 PF00440 Bacterial regulatory proteins, tetR family AGREI_3269 PF01370 NAD dependent epimerase/dehydratase family AGREI_3272 PF00535 Glycosyl transferase family 2 AGREI_3273 PF00561 alpha/beta hydrolase fold AGREI_3277 PF00356 Bacterial regulatory proteins, lacI family AGREI_3278 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_3279 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_3280 PF13416 Bacterial extracellular solute-binding protein AGREI_3281 PF13378 Enolase C-terminal domain-like AGREI_3281 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AGREI_3284 PF00294 pfkB family carbohydrate kinase AGREI_3285 PF01081 KDPG and KHG aldolase AGREI_3286 PF05448 Acetyl xylan esterase (AXE1) AGREI_3288 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_3288 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_3290 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_3290 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_3291 PF00356 Bacterial regulatory proteins, lacI family AGREI_3294 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AGREI_3294 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AGREI_3296 PF07969 Amidohydrolase family AGREI_3298 PF00005 ABC transporter AGREI_3299 PF00528 Binding-protein-dependent transport system inner membrane component AGREI_3304 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_3304 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_3304 PF14579 Helix-hairpin-helix motif AGREI_3304 PF02811 PHP domain AGREI_3315 PF14579 Helix-hairpin-helix motif AGREI_3315 PF02811 PHP domain AGREI_3315 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_3315 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_3320 PF00132 Bacterial transferase hexapeptide (six repeats) AGREI_3322 PF07969 Amidohydrolase family AGREI_3323 PF06299 Protein of unknown function (DUF1045) AGREI_3324 PF00005 ABC transporter AGREI_3325 PF00005 ABC transporter AGREI_3326 PF06007 Phosphonate metabolism protein PhnJ AGREI_3327 PF05861 Bacterial phosphonate metabolism protein (PhnI) AGREI_3329 PF06754 Phosphonate metabolism protein PhnG AGREI_3330 PF07729 FCD domain AGREI_3330 PF00392 Bacterial regulatory proteins, gntR family AGREI_3337 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AGREI_3338 PF00005 ABC transporter AGREI_3338 PF00664 ABC transporter transmembrane region AGREI_3338 PF08021 Siderophore-interacting FAD-binding domain AGREI_3338 PF04954 Siderophore-interacting protein AGREI_3339 PF01497 Periplasmic binding protein AGREI_3340 PF01032 FecCD transport family AGREI_3341 PF01032 FecCD transport family AGREI_3342 PF00196 Bacterial regulatory proteins, luxR family AGREI_3342 PF00072 Response regulator receiver domain AGREI_3343 PF07730 Histidine kinase AGREI_3343 PF00672 HAMP domain AGREI_3343 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AGREI_3343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AGREI_3345 PF12704 MacB-like periplasmic core domain AGREI_3345 PF00005 ABC transporter AGREI_3346 PF05425 Copper resistance protein D AGREI_3346 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AGREI_3350 PF00732 GMC oxidoreductase AGREI_3350 PF05199 GMC oxidoreductase AGREI_3352 PF07690 Major Facilitator Superfamily AGREI_3353 PF09209 Tetracyclin repressor-like, C-terminal domain AGREI_3353 PF00440 Bacterial regulatory proteins, tetR family AGREI_3354 PF03773 Predicted permease AGREI_3358 PF03773 Predicted permease AGREI_3364 PF03422 Carbohydrate binding module (family 6) AGREI_3364 PF04616 Glycosyl hydrolases family 43 AGREI_3365 PF02653 Branched-chain amino acid transport system / permease component AGREI_3366 PF02653 Branched-chain amino acid transport system / permease component AGREI_3367 PF00005 ABC transporter AGREI_3368 PF13407 Periplasmic binding protein domain AGREI_3369 PF00005 ABC transporter AGREI_3370 PF00356 Bacterial regulatory proteins, lacI family AGREI_3373 PF00534 Glycosyl transferases group 1 AGREI_3373 PF13439 Glycosyltransferase Family 4 AGREI_3374 PF04101 Glycosyltransferase family 28 C-terminal domain AGREI_3376 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AGREI_3377 PF00892 EamA-like transporter family AGREI_3380 PF01451 Low molecular weight phosphotyrosine protein phosphatase AGREI_3381 PF08328 Adenylosuccinate lyase C-terminal AGREI_3381 PF00206 Lyase AGREI_3389 PF12538 DNA transporter AGREI_3389 PF01580 FtsK/SpoIIIE family AGREI_3391 PF00069 Protein kinase domain AGREI_3391 PF13191 AAA ATPase domain AGREI_3397 PF07726 ATPase family associated with various cellular activities (AAA) AGREI_3397 PF17863 AAA lid domain AGREI_3399 PF00970 Oxidoreductase FAD-binding domain AGREI_3399 PF00111 2Fe-2S iron-sulfur cluster binding domain AGREI_3399 PF00175 Oxidoreductase NAD-binding domain AGREI_3402 PF00005 ABC transporter AGREI_3402 PF13732 Domain of unknown function (DUF4162) AGREI_3406 PF00248 Aldo/keto reductase family AGREI_3408 PF03796 DnaB-like helicase C terminal domain AGREI_3408 PF00772 DnaB-like helicase N terminal domain AGREI_3409 PF03948 Ribosomal protein L9, C-terminal domain AGREI_3409 PF01281 Ribosomal protein L9, N-terminal domain AGREI_3410 PF01084 Ribosomal protein S18 AGREI_3411 PF00436 Single-strand binding protein family AGREI_3412 PF01250 Ribosomal protein S6 AGREI_3414 PF00005 ABC transporter AGREI_3417 PF01032 FecCD transport family AGREI_3418 PF13735 tRNA nucleotidyltransferase domain 2 putative AGREI_3418 PF12627 Probable RNA and SrmB- binding site of polymerase A AGREI_3418 PF01743 Poly A polymerase head domain AGREI_3421 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_3422 PF00085 Thioredoxin AGREI_3423 PF00155 Aminotransferase class I and II AGREI_3424 PF01820 D-ala D-ala ligase N-terminus AGREI_3424 PF07478 D-ala D-ala ligase C-terminus AGREI_3428 PF17762 HTH domain found in ParB protein AGREI_3428 PF02195 ParB-like nuclease domain AGREI_3429 PF13614 AAA domain AGREI_3431 PF02527 rRNA small subunit methyltransferase G AGREI_3433 PF02096 60Kd inner membrane protein AGREI_3434 PF01809 Putative membrane protein insertion efficiency factor AGREI_3435 PF00825 Ribonuclease P AGREI_3436 PF00468 Ribosomal protein L34 AGREI_P0001 PF00582 Universal stress protein family AGREI_P0002 PF02796 Helix-turn-helix domain of resolvase AGREI_P0002 PF00239 Resolvase, N terminal domain AGREI_P0006 PF07733 Bacterial DNA polymerase III alpha NTPase domain AGREI_P0006 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AGREI_P0006 PF02811 PHP domain AGREI_P0006 PF14579 Helix-hairpin-helix motif AGREI_P0018 PF02384 N-6 DNA Methylase AGREI_P0019 PF09572 XamI restriction endonuclease AGREI_P0049 PF07015 VirC1 protein AGREI_P0053 PF00436 Single-strand binding protein family AGREI_P0055 PF06414 Zeta toxin AGREI_P0061 PF00565 Staphylococcal nuclease homologue AGREI_P0068 PF01443 Viral (Superfamily 1) RNA helicase AGREI_P0068 PF03389 MobA/MobL family AGREI_P0068 PF17841 BID domain of Bartonella effector protein (Bep) AGREI_P0071 PF01022 Bacterial regulatory protein, arsR family AGREI_P0075 PF00230 Major intrinsic protein AGREI_P0076 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AGREI_P0076 PF07992 Pyridine nucleotide-disulphide oxidoreductase AGREI_P0078 PF00920 Dehydratase family AGREI_P0079 PF00719 Inorganic pyrophosphatase AGREI_P0080 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AGREI_P0081 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AGREI_P0082 PF00113 Enolase, C-terminal TIM barrel domain AGREI_P0082 PF03952 Enolase, N-terminal domain