locus-tag	class	description
At1D132_00010	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
At1D132_00020	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D132_00030	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
At1D132_00040	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
At1D132_00050	COG1420	regulation of RNA biosynthetic process
At1D132_00060	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
At1D132_00070	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D132_00080	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
At1D132_00100	COG1137	ATPase activity
At1D132_00110	COG1934	Involved in the assembly of lipopolysaccharide (LPS). Required for the translocation of LPS from the inner membrane to the outer membrane. May form a bridge between the inner membrane and the outer membrane, via interactions with LptC and LptD, thereby facilitating LPS transfer across the periplasm
At1D132_00130	COG0616	signal peptide processing
At1D132_00140	COG0776	regulation of translation
At1D132_00160	COG0116	Belongs to the methyltransferase superfamily
At1D132_00160	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
At1D132_00170	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D132_00180	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
At1D132_00210	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
At1D132_00220	COG2844	Modifies, by uridylylation and deuridylylation, the PII regulatory proteins (GlnB and homologs), in response to the nitrogen status of the cell that GlnD senses through the glutamine level. Under low glutamine levels, catalyzes the conversion of the PII proteins and UTP to PII-UMP and PPi, while under higher glutamine levels, GlnD hydrolyzes PII-UMP to PII and UMP (deuridylylation). Thus, controls uridylylation state and activity of the PII proteins, and plays an important role in the regulation of nitrogen
At1D132_00230	COG0728	peptidoglycan biosynthetic process
At1D132_00250	COG0180	Tryptophanyl-tRNA synthetase
At1D132_00270	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
At1D132_00290	COG0456	acetyltransferase
At1D132_00320	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D132_00330	COG1702	phosphate starvation-inducible protein PhoH
At1D132_00340	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
At1D132_00360	COG0815	Transfers the fatty acyl group on membrane lipoproteins
At1D132_00370	COG1396	sequence-specific DNA binding
At1D132_00380	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
At1D132_00390	COG0220	tRNA (guanine-N7-)-methyltransferase activity
At1D132_00400	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_00420	COG0242	peptide deformylase activity
At1D132_00430	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
At1D132_00440	COG0101	tRNA pseudouridine synthase activity
At1D132_00460	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D132_00470	COG2171	N-acyltransferase activity
At1D132_00490	COG0840	transmembrane signaling receptor activity
At1D132_00510	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D132_00560	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
At1D132_00580	COG0218	Necessary for normal cell division and for the maintenance of normal septation
At1D132_00590	COG0706	membrane insertase activity
At1D132_00600	COG0594	ribonuclease P activity
At1D132_00610	COG0840	transmembrane signaling receptor activity
At1D132_00640	COG3842	ATPase activity
At1D132_00650	COG1175	transmembrane transport
At1D132_00660	COG0395	ABC-type sugar transport system, permease component
At1D132_00690	COG0427	acetyl-CoA hydrolase
At1D132_00710	COG3938	Belongs to the proline racemase family
At1D132_00720	COG0418	dihydroorotase activity
At1D132_00730	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
At1D132_00770	COG0166	Belongs to the GPI family
At1D132_00780	COG0318	PFAM AMP-dependent synthetase and ligase
At1D132_00790	COG3842	ATPase activity
At1D132_00800	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D132_00810	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D132_00820	COG4774	siderophore transport
At1D132_00890	COG2326	polyphosphate kinase activity
At1D132_00900	COG5002	protein histidine kinase activity
At1D132_00910	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
At1D132_00920	COG0573	inorganic phosphate transmembrane transporter activity
At1D132_00940	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
At1D132_00950	COG0704	Plays a role in the regulation of phosphate uptake
At1D132_00960	COG0745	RESPONSE REGULATOR receiver
At1D132_00980	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
At1D132_00990	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
At1D132_01000	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
At1D132_01010	COG2967	ApaG domain
At1D132_01030	COG0717	Belongs to the dCTP deaminase family
At1D132_01040	COG2335	COG2335, Secreted and surface protein containing fasciclin-like repeats
At1D132_01080	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
At1D132_01180	COG0167	dihydroorotate dehydrogenase activity
At1D132_01210	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D132_01250	COG1959	2 iron, 2 sulfur cluster binding
At1D132_01260	COG1201	RNA secondary structure unwinding
At1D132_01300	COG0730	response to heat
At1D132_01320	COG1960	acyl-CoA dehydrogenase activity
At1D132_01330	COG0183	Belongs to the thiolase family
At1D132_01340	COG1024	Enoyl-CoA hydratase
At1D132_01340	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D132_01370	COG1320	monovalent cation:proton antiporter activity
At1D132_01380	COG2212	antiporter activity
At1D132_01390	COG1863	multisubunit Na H antiporter MnhE subunit
At1D132_01400	COG0651	ATP synthesis coupled electron transport
At1D132_01410	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D132_01420	COG2111	Na H antiporter
At1D132_01420	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
At1D132_01440	COG0840	transmembrane signaling receptor activity
At1D132_01470	COG2198	Histidine kinase
At1D132_01470	COG0643	Histidine kinase
At1D132_01480	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
At1D132_01490	COG2201	protein-glutamate methylesterase activity
At1D132_01500	COG0745	RESPONSE REGULATOR receiver
At1D132_01510	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
At1D132_01530	COG1766	The M ring may be actively involved in energy transduction
At1D132_01540	COG2771	luxR family
At1D132_01560	COG0840	transmembrane signaling receptor activity
At1D132_01560	COG2972	Histidine kinase
At1D132_01570	COG2198	Histidine kinase
At1D132_01570	COG2205	protein histidine kinase activity
At1D132_01570	COG0784	Response regulator, receiver
At1D132_01580	COG1970	mechanosensitive ion channel activity
At1D132_01590	COG0436	Aminotransferase
At1D132_01620	COG3024	Inhibits all the catalytic activities of DNA gyrase by preventing its interaction with DNA. Acts by binding directly to the C-terminal domain of GyrB, which probably disrupts DNA binding by the gyrase
At1D132_01630	COG0424	maF-like protein
At1D132_01640	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
At1D132_01660	COG5328	Belongs to the UPF0262 family
At1D132_01670	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
At1D132_01690	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
At1D132_01740	COG1338	Plays a role in the flagellum-specific transport system
At1D132_01760	COG2063	Assembles around the rod to form the L-ring and probably protects the motor basal body from shearing forces during rotation
At1D132_01780	COG1706	bacterial-type flagellum-dependent cell motility
At1D132_01790	COG1261	Involved in the assembly process of the P-ring formation. It may associate with FlgF on the rod constituting a structure essential for the P-ring assembly or may act as a modulator protein for the P-ring assembly
At1D132_01800	COG4786	Flagellar basal body rod
At1D132_01810	COG1677	Flagellar hook-basal body complex protein FliE
At1D132_01820	COG1558	bacterial-type flagellum-dependent cell motility
At1D132_01830	COG1815	bacterial-type flagellum-dependent cell motility
At1D132_01850	COG1157	protein secretion by the type III secretion system
At1D132_01860	COG4786	Flagellar basal body rod
At1D132_01880	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
At1D132_01890	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D132_01900	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D132_01910	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
At1D132_01920	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D132_01960	COG1360	Flagellar Motor Protein
At1D132_02010	COG1749	Flagellar hook protein flgE
At1D132_02050	COG5443	negative regulation of bacterial-type flagellum assembly
At1D132_02060	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
At1D132_02080	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
At1D132_02160	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
At1D132_02170	COG1609	Transcriptional regulator
At1D132_02180	COG1653	transport
At1D132_02190	COG1175	transmembrane transport
At1D132_02200	COG0395	ABC-type sugar transport system, permease component
At1D132_02210	COG0366	Alpha amylase catalytic
At1D132_02220	COG3842	ATPase activity
At1D132_02250	COG0129	dihydroxy-acid dehydratase activity
At1D132_02260	COG0363	glucosamine-6-phosphate deaminase activity
At1D132_02270	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
At1D132_02280	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_02300	COG2081	HI0933 family
At1D132_02340	COG2224	Isocitrate lyase
At1D132_02370	COG3842	ATPase activity
At1D132_02380	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_02390	COG1177	transmembrane transport
At1D132_02410	COG2205	protein histidine kinase activity
At1D132_02420	COG0248	Ppx GppA phosphatase
At1D132_02430	COG0293	Specifically methylates the uridine in position 2552 of 23S rRNA at the 2'-O position of the ribose in the fully assembled 50S ribosomal subunit
At1D132_02440	COG0477	Major facilitator Superfamily
At1D132_02530	COG0521	Mo-molybdopterin cofactor biosynthetic process
At1D132_02540	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
At1D132_02560	COG0142	geranyltranstransferase activity
At1D132_02610	COG0752	glycyl-tRNA synthetase alpha subunit
At1D132_02630	COG1704	LemA family
At1D132_02640	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
At1D132_02660	COG0751	glycine-tRNA ligase activity
At1D132_02670	COG1683	Conserved Protein
At1D132_02680	COG0840	transmembrane signaling receptor activity
At1D132_02700	COG0151	Belongs to the GarS family
At1D132_02710	COG2183	response to ionizing radiation
At1D132_02720	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D132_02740	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
At1D132_02770	COG0583	DNA-binding transcription factor activity
At1D132_02810	COG0306	phosphate transporter
At1D132_02830	COG0561	phosphatase activity
At1D132_02840	COG0438	transferase activity, transferring glycosyl groups
At1D132_02850	COG2186	Transcriptional regulator
At1D132_02870	COG0583	DNA-binding transcription factor activity
At1D132_02880	COG0277	FAD linked oxidase domain protein
At1D132_02890	COG0277	FAD linked oxidase domain protein
At1D132_02900	COG0247	lactate metabolic process
At1D132_02920	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_02930	COG2818	Glycosylase
At1D132_02950	COG2855	membrane
At1D132_02960	COG0583	DNA-binding transcription factor activity
At1D132_03000	COG0124	histidyl-tRNA synthetase
At1D132_03020	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
At1D132_03030	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
At1D132_03040	COG2259	Doxx family
At1D132_03060	COG0459	protein refolding
At1D132_03070	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
At1D132_03090	COG0196	riboflavin kinase activity
At1D132_03100	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
At1D132_03120	COG0590	tRNA wobble adenosine to inosine editing
At1D132_03130	COG1187	pseudouridine synthase activity
At1D132_03140	COG0742	ribosomal rna small subunit methyltransferase
At1D132_03150	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D132_03170	COG0312	modulator of DNA gyrase
At1D132_03180	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_03200	COG1519	Transferase
At1D132_03320	COG4396	Host-nuclease inhibitor protein Gam
At1D132_03490	COG4373	Mu-like prophage FluMu protein gp28
At1D132_03500	COG4383	Mu-like prophage protein gp29
At1D132_03550	COG4397	Mu-like prophage major head subunit gpT
At1D132_03790	COG1663	tetraacyldisaccharide 4'-kinase activity
At1D132_03810	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
At1D132_03830	COG5001	Diguanylate cyclase
At1D132_03830	COG3300	MHYT domain
At1D132_03840	COG3386	PFAM SMP-30 Gluconolaconase
At1D132_03850	COG0800	Aldolase
At1D132_03860	COG3734	2-keto-3-deoxy-galactonokinase
At1D132_03870	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_03890	COG2197	response regulator
At1D132_03900	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D132_03920	COG0598	Magnesium transport protein CorA
At1D132_03930	COG3158	transport of potassium into the cell
At1D132_03960	COG0356	it plays a direct role in the translocation of protons across the membrane
At1D132_03980	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D132_03990	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
At1D132_04020	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
At1D132_04060	COG0009	L-threonylcarbamoyladenylate synthase
At1D132_04080	COG4638	Rieske (2fe-2S)
At1D132_04130	COG1960	acyl-CoA dehydrogenase activity
At1D132_04160	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
At1D132_04170	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
At1D132_04180	COG0840	transmembrane signaling receptor activity
At1D132_04200	COG1522	sequence-specific DNA binding
At1D132_04260	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
At1D132_04270	COG1741	Belongs to the pirin family
At1D132_04280	COG1722	exodeoxyribonuclease VII activity
At1D132_04290	COG0123	including yeast histone deacetylase and acetoin utilization protein
At1D132_04300	COG1268	BioY protein
At1D132_04310	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
At1D132_04320	COG1122	ATPase activity
At1D132_04330	COG3214	Protein conserved in bacteria
At1D132_04350	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
At1D132_04380	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D132_04410	COG0259	pyridoxamine-phosphate oxidase activity
At1D132_04440	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D132_04460	COG0312	modulator of DNA gyrase
At1D132_04490	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D132_04500	COG0109	protoheme IX farnesyltransferase activity
At1D132_04520	COG3175	Exerts its effect at some terminal stage of cytochrome c oxidase synthesis, probably by being involved in the insertion of the copper B into subunit I
At1D132_04560	COG3346	SURF1 family
At1D132_04570	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
At1D132_04580	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
At1D132_04590	COG0328	RNA-DNA hybrid ribonuclease activity
At1D132_04620	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
At1D132_04620	COG0678	peroxiredoxin activity
At1D132_04640	COG1678	Uncharacterized ACR, COG1678
At1D132_04680	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D132_04690	COG0612	Peptidase, M16
At1D132_04730	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D132_04740	COG1802	Transcriptional regulator
At1D132_04770	COG2189	Belongs to the N(4) N(6)-methyltransferase family
At1D132_04810	COG1194	a g-specific adenine glycosylase
At1D132_04830	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
At1D132_04840	COG1196	nuclear chromosome segregation
At1D132_04860	COG2514	catechol 2,3-dioxygenase activity
At1D132_04870	COG0574	Belongs to the PEP-utilizing enzyme family
At1D132_04870	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
At1D132_04950	COG0579	oxidoreductase
At1D132_04970	COG2895	sulfate adenylyltransferase (ATP) activity
At1D132_04980	COG0175	sulfate reduction
At1D132_04990	COG0175	sulfate reduction
At1D132_05000	COG1959	2 iron, 2 sulfur cluster binding
At1D132_05010	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
At1D132_05020	COG0555	PFAM binding-protein-dependent transport systems inner membrane component
At1D132_05030	COG4208	sulfate ABC transporter
At1D132_05040	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D132_05060	COG2199	diguanylate cyclase activity
At1D132_05060	COG2203	Gaf domain
At1D132_05060	COG2200	EAL domain
At1D132_05080	COG1309	transcriptional regulator
At1D132_05090	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_05100	COG2303	Involved in the biosynthesis of the osmoprotectant glycine betaine. Catalyzes the oxidation of choline to betaine aldehyde and betaine aldehyde to glycine betaine at the same rate
At1D132_05190	COG0477	Major facilitator Superfamily
At1D132_05210	COG1236	Exonuclease of the beta-lactamase fold involved in RNA processing
At1D132_05210	COG1793	dna ligase
At1D132_05250	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_05260	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_05270	COG1846	Transcriptional regulator
At1D132_05280	COG1764	response to oxidative stress
At1D132_05310	COG0488	(ABC) transporter
At1D132_05380	COG4221	oxidoreductase activity
At1D132_05410	COG0433	COG0433 Predicted ATPase
At1D132_05430	COG1733	regulation of RNA biosynthetic process
At1D132_05440	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
At1D132_05470	COG0656	L-ascorbic acid biosynthetic process
At1D132_05480	COG3781	membrane
At1D132_05490	COG2378	regulation of single-species biofilm formation
At1D132_05510	COG4106	trans-aconitate 2-methyltransferase activity
At1D132_05520	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D132_05530	COG0840	transmembrane signaling receptor activity
At1D132_05540	COG0583	DNA-binding transcription factor activity
At1D132_05570	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
At1D132_05590	COG2378	regulation of single-species biofilm formation
At1D132_05610	COG3909	cytochrome
At1D132_05620	COG2010	Cytochrome c
At1D132_05680	COG0789	Transcriptional regulator
At1D132_05730	COG4175	Glycine betaine
At1D132_05730	COG0517	IMP dehydrogenase activity
At1D132_05740	COG4176	ABC-type proline glycine betaine transport system permease component
At1D132_05780	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_05800	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D132_05800	COG2169	Transcriptional regulator
At1D132_05820	COG2514	catechol 2,3-dioxygenase activity
At1D132_05850	COG1272	protein, Hemolysin III
At1D132_05870	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D132_05890	COG2111	Na H antiporter
At1D132_05900	COG1006	Multisubunit Na H antiporter MnhC subunit
At1D132_05930	COG2212	antiporter activity
At1D132_05940	COG1320	monovalent cation:proton antiporter activity
At1D132_05950	COG4957	zinc ion binding
At1D132_05980	COG2166	iron-sulfur cluster assembly
At1D132_06000	COG2205	protein histidine kinase activity
At1D132_06090	COG3415	Transposase
At1D132_06090	COG2801	Transposase and inactivated derivatives
At1D132_06120	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D132_06130	COG2983	Belongs to the UPF0260 family
At1D132_06200	COG2337	Toxic component of a toxin-antitoxin (TA) module
At1D132_06220	COG2814	Major facilitator Superfamily
At1D132_06240	COG1621	beta-fructofuranosidase activity
At1D132_06250	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
At1D132_06360	COG4695	Portal protein
At1D132_06530	COG0745	RESPONSE REGULATOR receiver
At1D132_06540	COG3852	Histidine kinase
At1D132_06560	COG4235	cytochrome complex assembly
At1D132_06570	COG2332	Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH
At1D132_06580	COG1138	Cytochrome C-type biogenesis protein
At1D132_06590	COG3088	subunit of a heme lyase
At1D132_06600	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D132_06610	COG0745	RESPONSE REGULATOR receiver
At1D132_06620	COG2205	protein histidine kinase activity
At1D132_06630	COG3713	MltA-interacting MipA family protein
At1D132_06640	COG1391	[glutamine synthetase]-adenylyl-L-tyrosine phosphorylase
At1D132_06650	COG2202	Pas domain
At1D132_06650	COG2205	protein histidine kinase activity
At1D132_06670	COG0308	aminopeptidase N
At1D132_06680	COG0697	spore germination
At1D132_06710	COG0443	Heat shock 70 kDa protein
At1D132_06730	COG0300	oxidoreductase activity
At1D132_06790	COG0604	alcohol dehydrogenase
At1D132_06800	COG1733	regulation of RNA biosynthetic process
At1D132_06810	COG1968	undecaprenyl-diphosphatase activity
At1D132_06820	COG2239	Acts as a magnesium transporter
At1D132_06830	COG2814	Major facilitator Superfamily
At1D132_06890	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
At1D132_06950	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D132_07290	COG0741	lytic transglycosylase activity
At1D132_07300	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_07310	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
At1D132_07330	COG3415	Transposase
At1D132_07330	COG2801	Transposase and inactivated derivatives
At1D132_07340	COG0840	transmembrane signaling receptor activity
At1D132_07360	COG1758	RNA polymerase activity
At1D132_07400	COG0736	holo-[acyl-carrier-protein] synthase activity
At1D132_07410	COG0681	Belongs to the peptidase S26 family
At1D132_07420	COG0571	ribonuclease III activity
At1D132_07430	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
At1D132_07440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D132_07450	COG0784	Response regulator, receiver
At1D132_07460	COG1381	Involved in DNA repair and RecF pathway recombination
At1D132_07480	COG2226	methyltransferase
At1D132_07500	COG1418	mRNA catabolic process
At1D132_07520	COG0346	lactoylglutathione lyase activity
At1D132_07550	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_07560	COG3443	Belongs to the bacterial solute-binding protein 9 family
At1D132_07570	COG0668	transmembrane transport
At1D132_07590	COG1896	Catalyzes the strictly specific dephosphorylation of 2'- deoxyribonucleoside 5'-monophosphates
At1D132_07640	COG1051	belongs to the nudix hydrolase family
At1D132_07650	COG1742	UPF0060 membrane protein
At1D132_07670	COG3706	GGDEF domain
At1D132_07670	COG0745	RESPONSE REGULATOR receiver
At1D132_07690	COG1183	phosphatidylcholine synthase activity
At1D132_07700	COG0688	phosphatidylethanolamine metabolic process
At1D132_07710	COG5265	(ABC) transporter
At1D132_07790	COG2852	Protein conserved in bacteria
At1D132_07810	COG0215	cysteine-tRNA ligase activity
At1D132_07820	COG4221	oxidoreductase activity
At1D132_07830	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D132_07840	COG1286	toxin biosynthetic process
At1D132_07870	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D132_07890	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
At1D132_07910	COG5265	(ABC) transporter
At1D132_07920	COG0305	Participates in initiation and elongation during chromosome replication
At1D132_07960	COG0359	binds to the 23S rRNA
At1D132_07980	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
At1D132_07990	COG0360	Binds together with S18 to 16S ribosomal RNA
At1D132_08000	COG0667	Aldo Keto reductase
At1D132_08010	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
At1D132_08030	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D132_08040	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D132_08050	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
At1D132_08060	COG1561	YicC-like family, N-terminal region
At1D132_08070	COG0194	GDP metabolic process
At1D132_08100	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D132_08110	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D132_08130	COG1452	involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane
At1D132_08160	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D132_08200	COG3300	MHYT domain
At1D132_08200	COG5001	Diguanylate cyclase
At1D132_08210	COG4191	Histidine kinase
At1D132_08240	COG0488	(ABC) transporter
At1D132_08250	COG3706	GGDEF domain
At1D132_08270	COG0105	UTP biosynthetic process
At1D132_08310	COG0314	molybdopterin synthase activity
At1D132_08320	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
At1D132_08330	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
At1D132_08340	COG0322	excinuclease ABC activity
At1D132_08350	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_08370	COG0625	glutathione transferase activity
At1D132_08400	COG2961	Specifically methylates the adenine in position 2030 of 23S rRNA
At1D132_08410	COG0243	molybdopterin cofactor binding
At1D132_08440	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
At1D132_08450	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
At1D132_08460	COG0628	permease
At1D132_08480	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
At1D132_08490	COG0248	Ppx GppA phosphatase
At1D132_08540	COG2114	Pfam Adenylate and Guanylate cyclase catalytic domain
At1D132_08560	COG0349	Exonuclease involved in the 3' processing of various precursor tRNAs. Initiates hydrolysis at the 3'-terminus of an RNA molecule and releases 5'-mononucleotides
At1D132_08570	COG0477	Major facilitator Superfamily
At1D132_08580	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
At1D132_08600	COG4452	Inner membrane protein CreD
At1D132_08610	COG0659	secondary active sulfate transmembrane transporter activity
At1D132_08630	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D132_08640	COG2935	proteasome-mediated ubiquitin-dependent protein catabolic process
At1D132_08660	COG0113	porphobilinogen synthase activity
At1D132_08700	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D132_08710	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
At1D132_08720	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D132_08720	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
At1D132_08740	COG1280	lysine exporter protein (LysE YggA)
At1D132_08750	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
At1D132_08760	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D132_08770	COG2814	Major facilitator Superfamily
At1D132_08780	COG3808	pump that utilizes the energy of pyrophosphate hydrolysis as the driving force for
At1D132_08820	COG0416	fatty acid biosynthetic process
At1D132_08830	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D132_08840	COG0776	regulation of translation
At1D132_08900	COG0601	transmembrane transport
At1D132_08910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_08920	COG0444	Belongs to the ABC transporter superfamily
At1D132_08960	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
At1D132_08970	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D132_08990	COG0745	RESPONSE REGULATOR receiver
At1D132_08990	COG3706	GGDEF domain
At1D132_09000	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
At1D132_09010	COG0583	DNA-binding transcription factor activity
At1D132_09020	COG0737	Belongs to the 5'-nucleotidase family
At1D132_09070	COG2897	thiosulfate sulfurtransferase activity
At1D132_09100	COG0415	Belongs to the DNA photolyase family
At1D132_09120	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D132_09170	COG3932	Exopolysaccharide synthesis, ExoD
At1D132_09280	COG0297	glycogen (starch) synthase activity
At1D132_09330	COG1612	heme a metabolic process
At1D132_09350	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
At1D132_09360	COG0010	Belongs to the arginase family
At1D132_09370	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
At1D132_09380	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
At1D132_09400	COG1832	CoA-binding protein
At1D132_09450	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_09460	COG2124	cytochrome p450
At1D132_09470	COG2199	diguanylate cyclase activity
At1D132_09480	COG0740	serine-type endopeptidase activity
At1D132_09490	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
At1D132_09500	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
At1D132_09520	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D132_09550	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D132_09560	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D132_09570	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D132_09590	COG0649	NAD binding
At1D132_09610	COG1905	PFAM NADH dehydrogenase (ubiquinone) 24 kDa subunit
At1D132_09620	COG1894	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain
At1D132_09640	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
At1D132_09650	COG1143	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
At1D132_09670	COG0713	ATP synthesis coupled electron transport
At1D132_09700	COG1007	ATP synthesis coupled electron transport
At1D132_09740	COG0442	prolyl-tRNA aminoacylation
At1D132_09760	COG1136	(ABC) transporter
At1D132_09770	COG0587	DNA-directed DNA polymerase activity
At1D132_09790	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D132_09810	COG0784	Response regulator, receiver
At1D132_09820	COG0745	RESPONSE REGULATOR receiver
At1D132_09820	COG3706	GGDEF domain
At1D132_09830	COG0267	Belongs to the bacterial ribosomal protein bL33 family
At1D132_09840	COG0477	Major facilitator Superfamily
At1D132_09870	COG0557	exoribonuclease II activity
At1D132_09880	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
At1D132_09900	COG0758	DNA mediated transformation
At1D132_09910	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
At1D132_09930	COG0540	Belongs to the ATCase OTCase family
At1D132_09950	COG1960	acyl-CoA dehydrogenase activity
At1D132_09960	COG0456	acetyltransferase
At1D132_10020	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
At1D132_10030	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D132_10040	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
At1D132_10050	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D132_10060	COG0154	amidase activity
At1D132_10070	COG3811	Belongs to the UPF0386 family
At1D132_10100	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
At1D132_10120	COG0456	acetyltransferase
At1D132_10150	COG2360	Functions in the N-end rule pathway of protein degradation where it conjugates Leu, Phe and, less efficiently, Met from aminoacyl-tRNAs to the N-termini of proteins containing an N-terminal arginine or lysine
At1D132_10160	COG0439	Biotin carboxylase
At1D132_10170	COG0511	ligase activity, forming carbon-carbon bonds
At1D132_10180	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D132_10200	COG0436	Aminotransferase
At1D132_10240	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_10250	COG1530	ribonuclease E activity
At1D132_10270	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D132_10310	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
At1D132_10320	COG0384	phenazine biosynthesis protein PhzF
At1D132_10360	COG0633	Ferredoxin
At1D132_10380	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
At1D132_10390	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
At1D132_10400	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
At1D132_10420	COG3768	UPF0283 membrane protein
At1D132_10430	COG3106	COG3106 Predicted ATPase
At1D132_10450	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
At1D132_10490	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D132_10550	COG0537	adenosine 5'-monophosphoramidase activity
At1D132_10600	COG0052	Belongs to the universal ribosomal protein uS2 family
At1D132_10610	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
At1D132_10620	COG0528	UMP kinase activity
At1D132_10630	COG0233	cytoplasmic translational termination
At1D132_10640	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
At1D132_10650	COG0575	Belongs to the CDS family
At1D132_10660	COG0750	zinc metalloprotease
At1D132_10670	COG4775	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D132_10680	COG1044	Catalyzes the N-acylation of UDP-3-O-acylglucosamine using 3-hydroxyacyl-ACP as the acyl donor. Is involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D132_10690	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D132_10700	COG1043	involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D132_10710	COG3494	Protein of unknown function (DUF1009)
At1D132_10720	COG0763	Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell
At1D132_10730	COG2186	Transcriptional regulator
At1D132_10750	COG0765	amino acid transport
At1D132_10760	COG0765	amino acid transport
At1D132_10780	COG0372	Belongs to the citrate synthase family
At1D132_10810	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
At1D132_10830	COG0765	amino acid transport
At1D132_10840	COG0765	amino acid transport
At1D132_10850	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_10860	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_10870	COG3842	ATPase activity
At1D132_10880	COG0395	ABC-type sugar transport system, permease component
At1D132_10900	COG2182	Extracellular solute-binding protein
At1D132_10920	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_10930	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_10940	COG1063	alcohol dehydrogenase
At1D132_10950	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
At1D132_10960	COG0410	ABC transporter
At1D132_10970	COG0411	ABC transporter
At1D132_10990	COG0683	leucine binding
At1D132_11000	COG1960	acyl-CoA dehydrogenase activity
At1D132_11030	COG1024	Enoyl-CoA hydratase
At1D132_11060	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D132_11100	COG2877	3-deoxy-8-phosphooctulonate synthase activity
At1D132_11110	COG0148	phosphopyruvate hydratase activity
At1D132_11130	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
At1D132_11140	COG0022	dehydrogenase e1 component
At1D132_11140	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D132_11160	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D132_11180	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D132_11200	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
At1D132_11210	COG0697	spore germination
At1D132_11250	COG2867	negative regulation of translational initiation
At1D132_11260	COG1546	Belongs to the CinA family
At1D132_11270	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
At1D132_11270	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
At1D132_11290	COG3852	Histidine kinase
At1D132_11300	COG2204	response regulator
At1D132_11310	COG5000	phosphorelay sensor kinase activity
At1D132_11320	COG2204	response regulator
At1D132_11330	COG0569	domain protein
At1D132_11340	COG1923	regulation of RNA biosynthetic process
At1D132_11350	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
At1D132_11360	COG3415	Transposase
At1D132_11360	COG2801	Transposase and inactivated derivatives
At1D132_11370	COG3956	TIGRFAM MazG family protein
At1D132_11390	COG1648	precorrin-2 dehydrogenase activity
At1D132_11390	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D132_11420	COG0275	rRNA processing
At1D132_11470	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D132_11470	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
At1D132_11480	COG0509	glycine decarboxylation via glycine cleavage system
At1D132_11490	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D132_11540	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
At1D132_11550	COG0564	pseudouridine synthase activity
At1D132_11590	COG0251	oxidation-reduction process
At1D132_11600	COG0627	Serine hydrolase involved in the detoxification of formaldehyde
At1D132_11620	COG1671	Belongs to the UPF0178 family
At1D132_11640	COG0450	alkyl hydroperoxide reductase
At1D132_11710	COG2826	transposase and inactivated derivatives, IS30 family
At1D132_11720	COG0431	NADPH-dependent FMN reductase
At1D132_11740	COG0798	PFAM Bile acid sodium symporter
At1D132_11780	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
At1D132_11780	COG0321	lipoyl(octanoyl) transferase activity
At1D132_11790	COG0084	hydrolase, TatD family'
At1D132_11800	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D132_11820	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
At1D132_11920	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
At1D132_11930	COG2095	MarC family integral membrane protein
At1D132_11950	COG0629	single-stranded DNA binding
At1D132_11960	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
At1D132_11980	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
At1D132_12020	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D132_12030	COG1121	(ABC) transporter
At1D132_12040	COG4531	ABC-type Zn2 transport system, periplasmic component surface adhesin
At1D132_12070	COG0667	Aldo Keto reductase
At1D132_12090	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
At1D132_12220	COG0668	transmembrane transport
At1D132_12270	COG2239	Acts as a magnesium transporter
At1D132_12280	COG0243	molybdopterin cofactor binding
At1D132_12300	COG0242	peptide deformylase activity
At1D132_12340	COG0321	lipoyl(octanoyl) transferase activity
At1D132_12350	COG1064	alcohol dehydrogenase
At1D132_12460	COG2124	cytochrome p450
At1D132_12510	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D132_12520	COG0626	cystathionine gamma-synthase activity
At1D132_12530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_12540	COG4597	amino acid ABC transporter
At1D132_12550	COG0765	amino acid transport
At1D132_12560	COG1126	abc transporter atp-binding protein
At1D132_12570	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
At1D132_12600	COG0436	Aminotransferase
At1D132_12660	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D132_12680	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D132_12690	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D132_12700	COG0635	Involved in the biosynthesis of porphyrin-containing compound
At1D132_12730	COG3243	poly(R)-hydroxyalkanoic acid synthase
At1D132_12740	COG1489	DNA binding
At1D132_12750	COG0024	Methionine aminopeptidase
At1D132_12760	COG2003	Belongs to the UPF0758 family
At1D132_12880	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D132_13160	COG3200	phospho-2-dehydro-3-deoxyheptonate aldolase
At1D132_13190	COG0120	Catalyzes the reversible conversion of ribose-5- phosphate to ribulose 5-phosphate
At1D132_13200	COG0546	phosphoglycolate phosphatase activity
At1D132_13230	COG0114	fumarate hydratase activity
At1D132_13250	COG0504	CTP synthase activity
At1D132_13270	COG0149	triose-phosphate isomerase activity
At1D132_13290	COG0187	DNA topoisomerase II activity
At1D132_13310	COG1309	transcriptional regulator
At1D132_13320	COG2226	methyltransferase
At1D132_13330	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_13340	COG0740	serine-type endopeptidase activity
At1D132_13360	COG0640	Transcriptional regulator
At1D132_13370	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D132_13400	COG3264	Mechanosensitive ion channel
At1D132_13400	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
At1D132_13530	COG1127	ABC transporter
At1D132_13540	COG0767	ABC-type transport system involved in resistance to organic solvents, permease component
At1D132_13550	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_13580	COG0281	malic enzyme
At1D132_13580	COG0280	phosphate acetyltransferase
At1D132_13600	COG0778	Nitroreductase
At1D132_13610	COG0823	Involved in the tonB-independent uptake of proteins
At1D132_13630	COG1368	sulfuric ester hydrolase activity
At1D132_13680	COG0544	peptidyl-prolyl cis-trans isomerase activity
At1D132_13720	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
At1D132_13730	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D132_13810	COG0343	queuine tRNA-ribosyltransferase activity
At1D132_13820	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
At1D132_13830	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D132_13840	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
At1D132_13850	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
At1D132_13890	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
At1D132_13900	COG0134	indole-3-glycerol-phosphate synthase activity
At1D132_13910	COG0315	cyclic pyranopterin monophosphate synthase activity
At1D132_13920	COG0303	'Molybdopterin
At1D132_13930	COG3706	GGDEF domain
At1D132_13950	COG0475	glutathione-regulated potassium exporter activity
At1D132_13950	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
At1D132_13970	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
At1D132_13980	COG0697	spore germination
At1D132_13990	COG2814	Major facilitator Superfamily
At1D132_14000	COG0746	molybdenum cofactor guanylyltransferase activity
At1D132_14010	COG1763	Mo-molybdopterin cofactor biosynthetic process
At1D132_14020	COG0739	heme binding
At1D132_14030	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D132_14040	COG0496	Nucleotidase that shows phosphatase activity on nucleoside 5'-monophosphates
At1D132_14050	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D132_14060	COG0805	protein transport
At1D132_14070	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D132_14080	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
At1D132_14090	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
At1D132_14100	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
At1D132_14110	COG1472	Belongs to the glycosyl hydrolase 3 family
At1D132_14130	COG0018	arginyl-trna synthetase
At1D132_14140	COG0232	Belongs to the dGTPase family. Type 2 subfamily
At1D132_14150	COG0316	Belongs to the HesB IscA family
At1D132_14170	COG0790	COG0790 FOG TPR repeat, SEL1 subfamily
At1D132_14190	COG0525	valine-tRNA ligase activity
At1D132_14210	COG2518	Catalyzes the methyl esterification of L-isoaspartyl residues in peptides and proteins that result from spontaneous decomposition of normal L-aspartyl and L-asparaginyl residues. It plays a role in the repair and or degradation of damaged proteins
At1D132_14290	COG0655	NAD(P)H dehydrogenase (quinone) activity
At1D132_14300	COG1058	Belongs to the CinA family
At1D132_14300	COG1546	Belongs to the CinA family
At1D132_14310	COG0589	response to stress
At1D132_14320	COG2236	Acts on guanine, xanthine and to a lesser extent hypoxanthine
At1D132_14330	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
At1D132_14360	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D132_14380	COG1132	(ABC) transporter
At1D132_14390	COG0628	permease
At1D132_14430	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D132_14460	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
At1D132_14480	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
At1D132_14500	COG0302	gtp cyclohydrolase
At1D132_14510	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
At1D132_14520	COG1752	Esterase of the alpha-beta hydrolase superfamily
At1D132_14530	COG0517	IMP dehydrogenase activity
At1D132_14530	COG0516	GMP reductase activity
At1D132_14590	COG1760	l-serine dehydratase
At1D132_14660	COG0583	DNA-binding transcription factor activity
At1D132_14690	COG0062	Bifunctional enzyme that catalyzes the epimerization of the S- and R-forms of NAD(P)HX and the dehydration of the S-form of NAD(P)HX at the expense of ADP, which is converted to AMP. This allows the repair of both epimers of NAD(P)HX, a damaged form of NAD(P)H that is a result of enzymatic or heat-dependent hydration
At1D132_14690	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
At1D132_14700	COG0347	Belongs to the P(II) protein family
At1D132_14710	COG0174	glutamine synthetase
At1D132_14770	COG0697	spore germination
At1D132_14790	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
At1D132_14810	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
At1D132_14830	COG3668	Plasmid stabilization system
At1D132_14840	COG3905	.,Oxidizes proline to glutamate for use as a carbon and nitrogen source
At1D132_14870	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D132_14880	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D132_14890	COG2186	Transcriptional regulator
At1D132_14930	COG1129	ABC transporter
At1D132_14940	COG1183	phosphatidylcholine synthase activity
At1D132_14950	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D132_14960	COG0679	Auxin Efflux Carrier
At1D132_14970	COG0785	Cytochrome C biogenesis protein
At1D132_15030	COG1278	Cold shock
At1D132_15110	COG2267	carboxylic ester hydrolase activity
At1D132_15140	COG0577	efflux transmembrane transporter activity
At1D132_15140	COG1136	(ABC) transporter
At1D132_15150	COG1136	(ABC) transporter
At1D132_15150	COG0577	efflux transmembrane transporter activity
At1D132_15180	COG2151	metal-sulfur cluster biosynthetic enzyme
At1D132_15190	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
At1D132_15200	COG0719	Fe-S assembly protein
At1D132_15210	COG0396	ATPase activity
At1D132_15220	COG0719	Fe-S assembly protein
At1D132_15230	COG1104	cysteine desulfurase activity
At1D132_15240	COG2945	thiolester hydrolase activity
At1D132_15250	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
At1D132_15260	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
At1D132_15280	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
At1D132_15290	COG2833	Protein of unknown function (DUF455)
At1D132_15300	COG0739	heme binding
At1D132_15310	COG0513	Belongs to the DEAD box helicase family
At1D132_15370	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
At1D132_15390	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D132_15400	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D132_15410	COG0047	phosphoribosylformylglycinamidine synthase activity
At1D132_15440	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D132_15460	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
At1D132_15500	COG0278	Belongs to the glutaredoxin family. Monothiol subfamily
At1D132_15510	COG2814	Major facilitator Superfamily
At1D132_15520	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_15530	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_15540	COG0037	tRNA processing
At1D132_15550	COG2066	Belongs to the glutaminase family
At1D132_15560	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
At1D132_15570	COG0861	Integral membrane protein TerC family
At1D132_15600	COG1280	lysine exporter protein (LysE YggA)
At1D132_15630	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
At1D132_15640	COG0565	Catalyzes the formation of 2'O-methylated cytidine (Cm32) or 2'O-methylated uridine (Um32) at position 32 in tRNA
At1D132_15660	COG0538	isocitrate dehydrogenase activity
At1D132_15690	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
At1D132_15700	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
At1D132_15710	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_15720	COG2313	pseudouridylate synthase activity
At1D132_15740	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_15750	COG4215	(ABC) transporter
At1D132_15770	COG5425	PFAM Usg family protein
At1D132_15790	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D132_15800	COG1522	sequence-specific DNA binding
At1D132_15810	COG1573	uracil-dna glycosylase
At1D132_15830	COG2205	protein histidine kinase activity
At1D132_15830	COG2202	Pas domain
At1D132_15850	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
At1D132_15860	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
At1D132_15890	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
At1D132_15910	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_15920	COG1129	ABC transporter
At1D132_15930	COG1879	ABC-type sugar transport system periplasmic component
At1D132_15940	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_15950	COG3959	Transketolase, thiamine diphosphate binding domain
At1D132_15960	COG3958	Transketolase
At1D132_15970	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D132_15980	COG2390	Transcriptional regulator
At1D132_16000	COG2801	Transposase and inactivated derivatives
At1D132_16000	COG3415	Transposase
At1D132_16010	COG0842	Transport permease protein
At1D132_16020	COG1131	(ABC) transporter
At1D132_16060	COG0840	transmembrane signaling receptor activity
At1D132_16060	COG0840	transmembrane signaling receptor activity
At1D132_16080	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
At1D132_16090	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
At1D132_16120	COG0129	dihydroxy-acid dehydratase activity
At1D132_16130	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
At1D132_16140	COG2717	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. MsrQ provides electrons for reduction to the reductase catalytic subunit MsrP, using the quinone pool of the respiratory chain
At1D132_16160	COG3739	integral membrane protein
At1D132_16170	COG0203	ribosomal protein L17
At1D132_16180	COG0202	RNA polymerase activity
At1D132_16190	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
At1D132_16200	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
At1D132_16210	COG0563	adenylate kinase activity
At1D132_16220	COG0201	protein transport
At1D132_16230	COG0200	Binds to the 23S rRNA
At1D132_16240	COG1841	ribosomal large subunit assembly
At1D132_16250	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
At1D132_16260	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
At1D132_16270	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
At1D132_16280	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
At1D132_16290	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
At1D132_16300	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
At1D132_16310	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
At1D132_16320	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
At1D132_16330	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
At1D132_16340	COG0255	Belongs to the universal ribosomal protein uL29 family
At1D132_16350	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
At1D132_16360	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
At1D132_16370	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
At1D132_16380	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
At1D132_16390	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
At1D132_16400	COG0089	rRNA binding
At1D132_16410	COG0088	Forms part of the polypeptide exit tunnel
At1D132_16420	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
At1D132_16430	COG0051	transcription antitermination factor activity, RNA binding
At1D132_16440	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D132_16450	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
At1D132_16460	COG0049	tRNA binding
At1D132_16470	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
At1D132_16510	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
At1D132_16520	COG0085	RNA polymerase activity
At1D132_16530	COG0222	ribosome binding
At1D132_16540	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
At1D132_16550	COG0081	regulation of translation
At1D132_16560	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
At1D132_16590	COG1086	Polysaccharide biosynthesis protein
At1D132_16600	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
At1D132_16610	COG0861	Integral membrane protein TerC family
At1D132_16630	COG3895	Periplasmic Protein
At1D132_16690	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D132_16730	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
At1D132_16800	COG2198	Histidine kinase
At1D132_16800	COG0784	Response regulator, receiver
At1D132_16800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_16800	COG2205	protein histidine kinase activity
At1D132_16810	COG0784	Response regulator, receiver
At1D132_16820	COG3920	Histidine kinase
At1D132_16820	COG2202	Pas domain
At1D132_16830	COG0784	Response regulator, receiver
At1D132_16840	COG4251	negative regulation of phosphorylation
At1D132_16850	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
At1D132_16860	COG1607	acyl-coa hydrolase
At1D132_16910	COG2910	NAD(P)H-binding
At1D132_16920	COG1733	regulation of RNA biosynthetic process
At1D132_16930	COG0556	nucleotide-excision repair
At1D132_16940	COG2382	esterase
At1D132_16980	COG0484	heat shock protein binding
At1D132_17000	COG3706	GGDEF domain
At1D132_17020	COG3842	ATPase activity
At1D132_17040	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D132_17050	COG2801	Transposase and inactivated derivatives
At1D132_17050	COG3415	Transposase
At1D132_17060	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D132_17070	COG4154	Belongs to the RbsD FucU family
At1D132_17090	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
At1D132_17120	COG2207	Transcriptional regulator
At1D132_17130	COG1064	alcohol dehydrogenase
At1D132_17140	COG1252	NADH dehydrogenase
At1D132_17150	COG0854	Catalyzes the complicated ring closure reaction between the two acyclic compounds 1-deoxy-D-xylulose-5-phosphate (DXP) and 3-amino-2-oxopropyl phosphate (1-amino-acetone-3-phosphate or AAP) to form pyridoxine 5'-phosphate (PNP) and inorganic phosphate
At1D132_17160	COG2197	response regulator
At1D132_17170	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D132_17230	COG0656	L-ascorbic acid biosynthetic process
At1D132_17260	COG0440	acetolactate synthase activity
At1D132_17270	COG0028	Belongs to the TPP enzyme family
At1D132_17290	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
At1D132_17300	COG0560	Phosphoserine phosphatase
At1D132_17300	COG3830	Belongs to the UPF0237 family
At1D132_17320	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_17350	COG0330	HflC and HflK could
At1D132_17360	COG0330	HflC and HflK could
At1D132_17380	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
At1D132_17440	COG0277	FAD linked oxidase domain protein
At1D132_17450	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D132_17560	COG1335	isochorismatase
At1D132_17600	COG0006	proline dipeptidase activity
At1D132_17630	COG2264	protein methyltransferase activity
At1D132_17640	COG1999	signal sequence binding
At1D132_17660	COG0835	chemotaxis
At1D132_17690	COG0583	DNA-binding transcription factor activity
At1D132_17710	COG1247	-acetyltransferase
At1D132_17730	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
At1D132_17740	COG0497	DNA recombination
At1D132_17750	COG4105	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
At1D132_17770	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D132_17780	COG0849	cell division
At1D132_17790	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
At1D132_17800	COG1181	Belongs to the D-alanine--D-alanine ligase family
At1D132_17810	COG0477	Major facilitator Superfamily
At1D132_17820	COG3300	MHYT domain
At1D132_17820	COG5001	Diguanylate cyclase
At1D132_17830	COG0812	UDP-N-acetylmuramate dehydrogenase activity
At1D132_17840	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
At1D132_17850	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D132_17870	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
At1D132_17880	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D132_17900	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
At1D132_17930	COG0275	rRNA processing
At1D132_17940	COG2001	Belongs to the MraZ family
At1D132_17980	COG3023	N-Acetylmuramoyl-L-alanine amidase
At1D132_17990	COG1076	Co-chaperone involved in the maturation of iron-sulfur cluster-containing proteins. Seems to help targeting proteins to be folded toward HscA
At1D132_18040	COG4106	trans-aconitate 2-methyltransferase activity
At1D132_18100	COG2267	carboxylic ester hydrolase activity
At1D132_18110	COG1804	L-carnitine dehydratase bile acid-inducible protein F
At1D132_18140	COG0251	oxidation-reduction process
At1D132_18170	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_18180	COG2814	Major facilitator Superfamily
At1D132_18230	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_18260	COG0174	glutamine synthetase
At1D132_18270	COG0531	amino acid
At1D132_18290	COG1737	Transcriptional regulator
At1D132_18330	COG3842	ATPase activity
At1D132_18440	COG2968	Membrane
At1D132_18460	COG0432	Pfam Uncharacterised protein family UPF0047
At1D132_18490	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D132_18500	COG0358	DNA primase activity
At1D132_18520	COG0505	Belongs to the CarA family
At1D132_18530	COG0534	Mate efflux family protein
At1D132_18560	COG2321	neutral zinc metallopeptidase
At1D132_18590	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
At1D132_18610	COG3706	GGDEF domain
At1D132_18640	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D132_18660	COG1522	sequence-specific DNA binding
At1D132_18670	COG0492	ferredoxin-NADP+ reductase activity
At1D132_18680	COG0583	DNA-binding transcription factor activity
At1D132_18700	COG1902	pentaerythritol trinitrate reductase activity
At1D132_18760	COG0387	Pfam Sodium calcium exchanger
At1D132_18780	COG2200	EAL domain
At1D132_18780	COG2199	diguanylate cyclase activity
At1D132_18810	COG1278	Cold shock
At1D132_18820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D132_18840	COG1846	Transcriptional regulator
At1D132_18850	COG0745	RESPONSE REGULATOR receiver
At1D132_18860	COG2205	protein histidine kinase activity
At1D132_18870	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D132_18910	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
At1D132_18960	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
At1D132_18980	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
At1D132_19010	COG0840	transmembrane signaling receptor activity
At1D132_19020	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_19040	COG5001	Diguanylate cyclase
At1D132_19040	COG3300	MHYT domain
At1D132_19060	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
At1D132_19070	COG5001	Diguanylate cyclase
At1D132_19090	COG0193	aminoacyl-tRNA hydrolase activity
At1D132_19110	COG2127	Involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation
At1D132_19150	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
At1D132_19160	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
At1D132_19160	COG2857	Cytochrome c1
At1D132_19200	COG1132	(ABC) transporter
At1D132_19210	COG1132	(ABC) transporter
At1D132_19220	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
At1D132_19230	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
At1D132_19260	COG0408	coproporphyrinogen oxidase activity
At1D132_19290	COG0617	tRNA 3'-terminal CCA addition
At1D132_19320	COG0714	Associated with various cellular activities
At1D132_19360	COG0454	-acetyltransferase
At1D132_19370	COG0477	Major facilitator Superfamily
At1D132_19390	COG0435	Glutathione S-transferase
At1D132_19400	COG0494	nUDIX hydrolase
At1D132_19420	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
At1D132_19430	COG3135	benzoate transporter
At1D132_19460	COG1595	DNA-templated transcription, initiation
At1D132_19480	COG0740	serine-type endopeptidase activity
At1D132_19510	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
At1D132_19520	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
At1D132_19570	COG4175	Glycine betaine
At1D132_19600	COG1435	thymidine kinase activity
At1D132_19640	COG2862	Uncharacterized protein family, UPF0114
At1D132_19670	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
At1D132_19670	COG0512	Glutamine amidotransferase of anthranilate synthase
At1D132_19700	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D132_19730	COG0366	Alpha amylase catalytic
At1D132_19740	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_19780	COG1160	GTP binding
At1D132_19820	COG1133	In Escherichia coli SbmA is involved in uptake of microcin J25
At1D132_19840	COG0024	Methionine aminopeptidase
At1D132_19860	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_19880	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D132_19910	COG0583	DNA-binding transcription factor activity
At1D132_19940	COG0402	S-adenosylhomocysteine deaminase activity
At1D132_19970	COG1304	FMN binding
At1D132_19990	COG1309	transcriptional regulator
At1D132_20000	COG1686	Belongs to the peptidase S11 family
At1D132_20020	COG2351	hydroxyisourate hydrolase activity
At1D132_20030	COG3194	Catalyzes the catabolism of the allantoin degradation intermediate (S)-ureidoglycolate, generating urea and glyoxylate. Involved in the utilization of allantoin as nitrogen source
At1D132_20080	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D132_20100	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_20100	COG4121	Catalyzes the last two steps in the biosynthesis of 5- methylaminomethyl-2-thiouridine (mnm(5)s(2)U) at the wobble position (U34) in tRNA. Catalyzes the FAD-dependent demodification of cmnm(5)s(2)U34 to nm(5)s(2)U34, followed by the transfer of a methyl group from S-adenosyl-L-methionine to nm(5)s(2)U34, to form mnm(5)s(2)U34
At1D132_20110	COG0784	Response regulator, receiver
At1D132_20110	COG5002	protein histidine kinase activity
At1D132_20110	COG2205	protein histidine kinase activity
At1D132_20120	COG0513	Belongs to the DEAD box helicase family
At1D132_20130	COG0697	spore germination
At1D132_20140	COG2259	Doxx family
At1D132_20150	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_20170	COG2308	Evidence 4 Homologs of previously reported genes of
At1D132_20190	COG1305	Transglutaminase-like
At1D132_20200	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D132_20220	COG0456	acetyltransferase
At1D132_20250	COG4214	carbohydrate transport
At1D132_20260	COG1129	ABC transporter
At1D132_20270	COG4213	ABC transporter substrate-binding protein
At1D132_20370	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D132_20460	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D132_20480	COG0840	transmembrane signaling receptor activity
At1D132_20490	COG2814	Major facilitator Superfamily
At1D132_20500	COG0646	methionine synthase
At1D132_20500	COG1410	methionine synthase
At1D132_20520	COG4215	(ABC) transporter
At1D132_20530	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_20580	COG1215	transferase activity, transferring glycosyl groups
At1D132_20640	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D132_20650	COG2346	COG2346, Truncated hemoglobins
At1D132_20690	COG1309	transcriptional regulator
At1D132_20720	COG0494	nUDIX hydrolase
At1D132_20740	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_20750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_20800	COG1234	tRNA 3'-trailer cleavage
At1D132_20810	COG0378	Facilitates the functional incorporation of the urease nickel metallocenter. This process requires GTP hydrolysis, probably effectuated by UreG
At1D132_20820	COG0830	nickel cation binding
At1D132_20830	COG2371	Involved in urease metallocenter assembly. Binds nickel. Probably functions as a nickel donor during metallocenter assembly
At1D132_20860	COG0804	urea catabolic process
At1D132_20870	COG1442	glycosyl transferase family 8
At1D132_20880	COG3755	Protein conserved in bacteria
At1D132_20900	COG0832	Belongs to the urease beta subunit family
At1D132_20910	COG3813	Protein conserved in bacteria
At1D132_20920	COG0831	urea catabolic process
At1D132_20930	COG0829	nickel cation binding
At1D132_20970	COG0411	ABC transporter
At1D132_20990	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D132_21020	COG0174	glutamine synthetase
At1D132_21030	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_21040	COG5002	protein histidine kinase activity
At1D132_21040	COG2198	Histidine kinase
At1D132_21040	COG0784	Response regulator, receiver
At1D132_21070	COG0726	polysaccharide deacetylase
At1D132_21110	COG0411	ABC transporter
At1D132_21140	COG1218	3'(2'),5'-bisphosphate nucleotidase
At1D132_21300	COG0564	pseudouridine synthase activity
At1D132_21320	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
At1D132_21330	COG2801	Transposase and inactivated derivatives
At1D132_21330	COG3415	Transposase
At1D132_21350	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
At1D132_21400	COG0346	lactoylglutathione lyase activity
At1D132_21420	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
At1D132_21440	COG2832	Protein of unknown function (DUF454)
At1D132_21450	COG4559	Part of the ABC transporter complex HmuTUV involved in hemin import. Responsible for energy coupling to the transport system
At1D132_21460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_21470	COG4558	Periplasmic binding protein
At1D132_21490	COG3721	Heme iron utilization protein
At1D132_21520	COG2205	protein histidine kinase activity
At1D132_21600	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_21610	COG4605	iron ion homeostasis
At1D132_21620	COG4604	ABC transporter, ATP-binding protein
At1D132_21630	COG0783	Belongs to the Dps family
At1D132_21650	COG0583	DNA-binding transcription factor activity
At1D132_21670	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_21710	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
At1D132_21720	COG2240	Pyridoxal kinase involved in the salvage pathway of pyridoxal 5'-phosphate (PLP). Catalyzes the phosphorylation of pyridoxal to PLP
At1D132_21730	COG0288	reversible hydration of carbon dioxide
At1D132_21750	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
At1D132_21780	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
At1D132_21790	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D132_21800	COG0778	Nitroreductase
At1D132_21810	COG2267	carboxylic ester hydrolase activity
At1D132_21820	COG0251	oxidation-reduction process
At1D132_21830	COG1335	isochorismatase
At1D132_21840	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_21860	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_21890	COG1175	transmembrane transport
At1D132_21900	COG0395	ABC-type sugar transport system, permease component
At1D132_21920	COG3842	ATPase activity
At1D132_21930	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_21950	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D132_21980	COG4608	Belongs to the ABC transporter superfamily
At1D132_21990	COG0444	Belongs to the ABC transporter superfamily
At1D132_22010	COG0601	transmembrane transport
At1D132_22050	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
At1D132_22050	COG0392	lysyltransferase activity
At1D132_22140	COG1960	acyl-CoA dehydrogenase activity
At1D132_22200	COG0745	RESPONSE REGULATOR receiver
At1D132_22220	COG1902	pentaerythritol trinitrate reductase activity
At1D132_22220	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D132_22260	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
At1D132_22280	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_22290	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D132_22310	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
At1D132_22330	COG1509	lysine 2,3-aminomutase activity
At1D132_22360	COG0583	DNA-binding transcription factor activity
At1D132_22370	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_22380	COG0725	ABC transporter, periplasmic molybdate-binding protein
At1D132_22390	COG4149	molybdate abc transporter
At1D132_22400	COG4148	Part of the ABC transporter complex ModABC involved in molybdenum import. Responsible for energy coupling to the transport system
At1D132_22420	COG3191	aminopeptidase activity
At1D132_22430	COG2022	thiamine diphosphate biosynthetic process
At1D132_22460	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
At1D132_22470	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
At1D132_22490	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
At1D132_22540	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
At1D132_22590	COG0438	transferase activity, transferring glycosyl groups
At1D132_22630	COG4166	transmembrane transport
At1D132_22640	COG0601	transmembrane transport
At1D132_22650	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_22670	COG0438	transferase activity, transferring glycosyl groups
At1D132_22680	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
At1D132_22690	COG3142	Participates in the control of copper homeostasis
At1D132_22740	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_22750	COG1737	Transcriptional regulator
At1D132_22770	COG3842	ATPase activity
At1D132_22790	COG0395	ABC-type sugar transport system, permease component
At1D132_22800	COG1175	transmembrane transport
At1D132_22840	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
At1D132_22850	COG1940	carbohydrate kinase activity
At1D132_22870	COG0671	phosphoesterase, PA-phosphatase related
At1D132_22880	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
At1D132_22890	COG0156	8-amino-7-oxononanoate synthase activity
At1D132_22910	COG0729	surface antigen
At1D132_22930	COG0835	chemotaxis
At1D132_22960	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
At1D132_22970	COG0355	proton-transporting ATP synthase activity, rotational mechanism
At1D132_22980	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
At1D132_22990	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
At1D132_23000	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
At1D132_23010	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
At1D132_23040	COG4974	Belongs to the 'phage' integrase family
At1D132_23090	COG1280	lysine exporter protein (LysE YggA)
At1D132_23110	COG0508	dehydrogenase complex catalyzes the overall conversion of
At1D132_23130	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
At1D132_23140	COG0045	succinate-CoA ligase (ADP-forming) activity
At1D132_23150	COG0039	L-malate dehydrogenase activity
At1D132_23160	COG1485	Reduces the stability of FtsZ polymers in the presence of ATP
At1D132_23230	COG2264	protein methyltransferase activity
At1D132_23260	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
At1D132_23270	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
At1D132_23280	COG0181	hydroxymethylbilane synthase activity
At1D132_23360	COG1872	DUF167
At1D132_23370	COG0221	Catalyzes the hydrolysis of inorganic pyrophosphate (PPi) forming two phosphate ions
At1D132_23410	COG0339	signal peptide processing
At1D132_23420	COG1846	Transcriptional regulator
At1D132_23440	COG0137	argininosuccinate synthase activity
At1D132_23460	COG1280	lysine exporter protein (LysE YggA)
At1D132_23470	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D132_23480	COG4120	Belongs to the binding-protein-dependent transport system permease family
At1D132_23500	COG0820	rRNA (adenine-C2-)-methyltransferase activity
At1D132_23530	COG2154	pterin-4-alpha-carbinolamine dehydratase
At1D132_23540	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
At1D132_23550	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
At1D132_23570	COG4181	ATPase activity
At1D132_23590	COG0670	Belongs to the BI1 family
At1D132_23620	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
At1D132_23630	COG4133	protoheme IX ABC transporter activity
At1D132_23650	COG2386	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D132_23660	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
At1D132_23690	COG3706	GGDEF domain
At1D132_23710	COG2917	probably involved in intracellular septation
At1D132_23720	COG0552	protein localization to endoplasmic reticulum
At1D132_23730	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
At1D132_23740	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
At1D132_23760	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
At1D132_23770	COG1605	Chorismate mutase
At1D132_23770	COG0287	Prephenate dehydrogenase
At1D132_23780	COG0228	four-way junction DNA binding
At1D132_23790	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
At1D132_23800	COG0336	Belongs to the RNA methyltransferase TrmD family
At1D132_23820	COG0335	large ribosomal subunit rRNA binding
At1D132_23830	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D132_23840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_23870	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
At1D132_23880	COG4783	chaperone-mediated protein folding
At1D132_23890	COG3840	Part of the ABC transporter complex ThiBPQ involved in thiamine import. Responsible for energy coupling to the transport system
At1D132_23950	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
At1D132_23970	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
At1D132_23980	COG0142	geranyltranstransferase activity
At1D132_23990	COG2885	chlorophyll binding
At1D132_24000	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
At1D132_24010	COG2223	nitrite transmembrane transporter activity
At1D132_24020	COG1349	DNA-binding transcription factor activity
At1D132_24030	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
At1D132_24040	COG2197	response regulator
At1D132_24050	COG1132	(ABC) transporter
At1D132_24070	COG3459	Glycosyltransferase 36 associated
At1D132_24080	COG1473	amidohydrolase
At1D132_24100	COG0579	oxidoreductase
At1D132_24120	COG0129	dihydroxy-acid dehydratase activity
At1D132_24130	COG2084	Dehydrogenase
At1D132_24140	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_24150	COG0277	FAD linked oxidase domain protein
At1D132_24160	COG2186	Transcriptional regulator
At1D132_24180	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D132_24190	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D132_24200	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_24210	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D132_24230	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
At1D132_24240	COG0495	leucyl-tRNA aminoacylation
At1D132_24300	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
At1D132_24310	COG1946	Acyl-CoA thioesterase
At1D132_24320	COG0347	Belongs to the P(II) protein family
At1D132_24330	COG0004	ammonium transporteR
At1D132_24340	COG1674	ftsk spoiiie
At1D132_24350	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
At1D132_24380	COG0745	RESPONSE REGULATOR receiver
At1D132_24400	COG1329	Transcriptional regulator
At1D132_24410	COG2902	Dehydrogenase
At1D132_24420	COG2270	Major facilitator Superfamily
At1D132_24450	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_24480	COG0494	nUDIX hydrolase
At1D132_24500	COG0793	Belongs to the peptidase S41A family
At1D132_24520	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
At1D132_24530	COG0799	negative regulation of ribosome biogenesis
At1D132_24540	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
At1D132_24550	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
At1D132_24560	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
At1D132_24570	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
At1D132_24600	COG0211	Belongs to the bacterial ribosomal protein bL27 family
At1D132_24610	COG0261	This protein binds to 23S rRNA in the presence of protein L20
At1D132_24660	COG0066	3-isopropylmalate dehydratase activity
At1D132_24670	COG0473	3-isopropylmalate dehydrogenase activity
At1D132_24680	COG1858	cytochrome C peroxidase
At1D132_24690	COG1797	cobyrinic acid a,c-diamide synthase activity
At1D132_24700	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D132_24700	COG1648	precorrin-2 dehydrogenase activity
At1D132_24710	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
At1D132_24840	COG1492	cobalamin metabolic process
At1D132_24870	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_24880	COG3254	rhamnose metabolic process
At1D132_24890	COG0246	Mannitol dehydrogenase
At1D132_24900	COG1063	alcohol dehydrogenase
At1D132_24940	COG4214	carbohydrate transport
At1D132_24950	COG1129	ABC transporter
At1D132_24960	COG2186	Transcriptional regulator
At1D132_24970	COG2721	sulfolactate sulfo-lyase activity
At1D132_24980	COG0138	bifunctional purine biosynthesis protein purh
At1D132_25000	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
At1D132_25000	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
At1D132_25010	COG0501	Belongs to the peptidase M48B family
At1D132_25030	COG1475	DNA binding
At1D132_25040	COG1192	Involved in chromosome partitioning
At1D132_25050	COG0357	Ribosomal RNA small subunit methyltransferase G
At1D132_25060	COG0445	tRNA wobble uridine modification
At1D132_25070	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
At1D132_25080	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
At1D132_25100	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
At1D132_25110	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
At1D132_25120	COG0424	maF-like protein
At1D132_25130	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D132_25140	COG0237	dephospho-CoA kinase activity
At1D132_25150	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
At1D132_25160	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
At1D132_25170	COG3030	protein affecting phage T7 exclusion by the F plasmid
At1D132_25190	COG2821	murein-degrading enzyme. may play a role in recycling of muropeptides during cell elongation and or cell division
At1D132_25220	COG0187	DNA topoisomerase II activity
At1D132_25240	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D132_25270	COG0135	phosphoribosylanthranilate isomerase activity
At1D132_25280	COG0133	tryptophan synthase activity
At1D132_25290	COG0159	tryptophan synthase activity
At1D132_25300	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
At1D132_25350	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D132_25360	COG0802	atpase or kinase
At1D132_25370	COG2205	protein histidine kinase activity
At1D132_25380	COG0499	May play a key role in the regulation of the intracellular concentration of adenosylhomocysteine
At1D132_25390	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D132_25400	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
At1D132_25400	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
At1D132_25410	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
At1D132_25420	COG0642	Histidine kinase
At1D132_25430	COG0745	RESPONSE REGULATOR receiver
At1D132_25440	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
At1D132_25460	COG1072	(Pantothenic acid kinase))
At1D132_25470	COG0140	phosphoribosyl-ATP diphosphatase activity
At1D132_25480	COG0107	imidazoleglycerol-phosphate synthase activity
At1D132_25490	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
At1D132_25500	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
At1D132_25520	COG0131	Imidazoleglycerol-phosphate dehydratase
At1D132_25530	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
At1D132_25540	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
At1D132_25560	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
At1D132_25590	COG4567	Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain
At1D132_25610	COG1643	Atp-dependent helicase
At1D132_25640	COG0514	ATP-dependent DNA helicase (RecQ)
At1D132_25690	COG1072	(Pantothenic acid kinase))
At1D132_25710	COG1780	Probably involved in ribonucleotide reductase function
At1D132_25750	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
At1D132_25810	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_25830	COG2813	Specifically methylates the guanine in position
At1D132_25840	COG1185	polyribonucleotide nucleotidyltransferase activity
At1D132_25850	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
At1D132_25860	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
At1D132_25870	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
At1D132_25880	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
At1D132_25880	COG3064	Membrane
At1D132_25910	COG0779	Required for maturation of 30S ribosomal subunits
At1D132_25920	COG2814	Major facilitator Superfamily
At1D132_25930	COG2951	lytic endotransglycosylase activity
At1D132_25940	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
At1D132_25960	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
At1D132_25970	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
At1D132_25990	COG2816	NAD+ diphosphatase activity
At1D132_26000	COG0077	Prephenate dehydratase
At1D132_26000	COG1605	Chorismate mutase
At1D132_26010	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
At1D132_26020	COG3474	cytochrome
At1D132_26040	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
At1D132_26050	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
At1D132_26060	COG1278	Cold shock
At1D132_26070	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D132_26100	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D132_26100	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
At1D132_26120	COG0333	Belongs to the bacterial ribosomal protein bL32 family
At1D132_26180	COG2900	Belongs to the SlyX family
At1D132_26200	COG0484	heat shock protein binding
At1D132_26210	COG0443	Heat shock 70 kDa protein
At1D132_26230	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
At1D132_26280	COG0295	cytidine deaminase activity
At1D132_26290	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
At1D132_26300	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
At1D132_26310	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
At1D132_26330	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
At1D132_26340	COG1816	Catalyzes the hydrolytic deamination of adenine to hypoxanthine. Plays an important role in the purine salvage pathway and in nitrogen catabolism
At1D132_26350	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
At1D132_26370	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
At1D132_26380	COG1845	cytochrome c oxidase, subunit III
At1D132_26390	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
At1D132_26410	COG0477	Major facilitator Superfamily
At1D132_26420	COG0067	glutamate synthase
At1D132_26420	COG0069	glutamate synthase activity
At1D132_26420	COG0070	glutamate synthase
At1D132_26430	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
At1D132_26460	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
At1D132_26480	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
At1D132_26540	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_26580	COG0848	biopolymer transport protein
At1D132_26600	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D132_26630	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D132_26640	COG3454	Phosphonate metabolism
At1D132_26650	COG3709	Catalyzes the phosphorylation of ribose 1,5-bisphosphate to 5-phospho-D-ribosyl alpha-1-diphosphate (PRPP)
At1D132_26660	COG3639	organic phosphonate transmembrane transporter activity
At1D132_26670	COG3639	organic phosphonate transmembrane transporter activity
At1D132_26680	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
At1D132_26690	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
At1D132_26710	COG4778	phosphonate C-P lyase system protein PhnL
At1D132_26720	COG4107	phosphonate C-P lyase system protein PhnK
At1D132_26730	COG3627	carbon phosphorus lyase activity
At1D132_26750	COG3626	phosphonate metabolism
At1D132_26760	COG3625	alpha-D-ribose 1-methylphosphonate 5-triphosphate synthase activity
At1D132_26770	COG3624	Phosphonate C-P lyase system protein PhnG
At1D132_26780	COG2188	Transcriptional regulator
At1D132_26790	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
At1D132_26800	COG0837	glucose binding
At1D132_26810	COG1803	Methylglyoxal synthase
At1D132_26820	COG3770	Murein endopeptidase that cleaves the D-alanyl-meso-2,6- diamino-pimelyl amide bond that connects peptidoglycan strands. Likely plays a role in the removal of murein from the sacculus
At1D132_26830	COG4166	transmembrane transport
At1D132_26840	COG4174	ABC transporter (Permease)
At1D132_26850	COG4239	(ABC) transporter, permease
At1D132_26860	COG4172	Belongs to the ABC transporter superfamily
At1D132_26870	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_26880	COG0174	glutamine synthetase
At1D132_26890	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_26900	COG3265	gluconokinase activity
At1D132_26910	COG1174	glycine betaine transport
At1D132_26920	COG1125	glycine betaine transport
At1D132_26930	COG1174	glycine betaine transport
At1D132_26940	COG1732	Glycine betaine
At1D132_26960	COG1959	2 iron, 2 sulfur cluster binding
At1D132_26970	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D132_26990	COG4269	membrane
At1D132_27030	COG0697	spore germination
At1D132_27060	COG0791	NLP P60 protein
At1D132_27080	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
At1D132_27090	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
At1D132_27160	COG4964	Belongs to the GSP D family
At1D132_27240	COG3422	double-strand break repair
At1D132_27250	COG3757	hydrolase, family 25
At1D132_27260	COG0697	spore germination
At1D132_27270	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D132_27330	COG0481	GTPase activity
At1D132_27340	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D132_27370	COG1396	sequence-specific DNA binding
At1D132_27400	COG2169	Transcriptional regulator
At1D132_27400	COG1917	Cupin 2, conserved barrel domain protein
At1D132_27410	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D132_27460	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
At1D132_27470	COG0291	Belongs to the bacterial ribosomal protein bL35 family
At1D132_27480	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
At1D132_27500	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
At1D132_27510	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
At1D132_27510	COG0072	phenylalanine-tRNA ligase activity
At1D132_27520	COG0667	Aldo Keto reductase
At1D132_27550	COG0667	Aldo Keto reductase
At1D132_27560	COG4977	sequence-specific DNA binding
At1D132_27610	COG1570	exodeoxyribonuclease VII activity
At1D132_27620	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_27640	COG1846	Transcriptional regulator
At1D132_27650	COG0697	spore germination
At1D132_27660	COG2309	aminopeptidase activity
At1D132_27670	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
At1D132_27680	COG1393	Belongs to the ArsC family
At1D132_27710	COG1309	transcriptional regulator
At1D132_27730	COG0519	Catalyzes the synthesis of GMP from XMP
At1D132_27730	COG0518	GMP synthase (glutamine-hydrolyzing) activity
At1D132_27760	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
At1D132_27820	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
At1D132_27840	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
At1D132_27860	COG1968	undecaprenyl-diphosphatase activity
At1D132_27900	COG0284	orotidine-5'-phosphate decarboxylase activity
At1D132_27920	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
At1D132_27930	COG0592	DNA-directed DNA polymerase activity
At1D132_27940	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
At1D132_27950	COG0792	nuclease activity
At1D132_27980	COG1175	transmembrane transport
At1D132_27990	COG0395	ABC-type sugar transport system, permease component
At1D132_28000	COG3842	ATPase activity
At1D132_28020	COG0189	ligase activity
At1D132_28040	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
At1D132_28050	COG1280	lysine exporter protein (LysE YggA)
At1D132_28060	COG0756	dUTP diphosphatase activity
At1D132_28070	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
At1D132_28080	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
At1D132_28110	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
At1D132_28120	COG2226	methyltransferase
At1D132_28130	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
At1D132_28140	COG1024	Enoyl-CoA hydratase
At1D132_28150	COG0268	Binds directly to 16S ribosomal RNA
At1D132_28190	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D132_28210	COG0640	Transcriptional regulator
At1D132_28300	COG3842	ATPase activity
At1D132_28310	COG4209	transmembrane transport
At1D132_28320	COG0395	ABC-type sugar transport system, permease component
At1D132_28330	COG1653	transport
At1D132_28350	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_28370	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_28390	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_28430	COG1846	Transcriptional regulator
At1D132_28430	COG1940	carbohydrate kinase activity
At1D132_28440	COG2197	response regulator
At1D132_28450	COG0601	transmembrane transport
At1D132_28500	COG0747	negative chemotaxis
At1D132_28530	COG1446	asparaginase
At1D132_28550	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_28560	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_28570	COG0601	transmembrane transport
At1D132_28650	COG1215	transferase activity, transferring glycosyl groups
At1D132_28670	COG0025	NhaP-type Na H and K H
At1D132_28680	COG4178	(ABC) transporter
At1D132_28690	COG3706	GGDEF domain
At1D132_28700	COG1609	Transcriptional regulator
At1D132_28730	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_28740	COG1735	metal-dependent hydrolase with the TIM-barrel fold
At1D132_28810	COG1794	racemase activity, acting on amino acids and derivatives
At1D132_28820	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_28830	COG1309	transcriptional regulator
At1D132_28840	COG2233	PERMEase
At1D132_28920	COG1595	DNA-templated transcription, initiation
At1D132_28940	COG0395	ABC-type sugar transport system, permease component
At1D132_28950	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_28970	COG3842	ATPase activity
At1D132_29050	COG1653	transport
At1D132_29070	COG0395	ABC-type sugar transport system, permease component
At1D132_29080	COG3842	ATPase activity
At1D132_29090	COG0395	ABC-type sugar transport system, permease component
At1D132_29100	COG1175	transmembrane transport
At1D132_29160	COG1609	Transcriptional regulator
At1D132_29180	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_29190	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_29200	COG3842	ATPase activity
At1D132_29210	COG0395	ABC-type sugar transport system, permease component
At1D132_29220	COG1175	transmembrane transport
At1D132_29230	COG1653	transport
At1D132_29240	COG1309	transcriptional regulator
At1D132_29250	COG0673	inositol 2-dehydrogenase activity
At1D132_29280	COG0673	inositol 2-dehydrogenase activity
At1D132_29310	COG1278	Cold shock
At1D132_29330	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D132_29390	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D132_29430	COG0395	ABC-type sugar transport system, permease component
At1D132_29440	COG1175	transmembrane transport
At1D132_29480	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_29490	COG3618	amidohydrolase
At1D132_29500	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_29510	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_29520	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_29530	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
At1D132_29540	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_29550	COG2186	Transcriptional regulator
At1D132_29650	COG2223	nitrite transmembrane transporter activity
At1D132_29660	COG0583	DNA-binding transcription factor activity
At1D132_29670	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D132_29690	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_29700	COG2084	Dehydrogenase
At1D132_29730	COG1609	Transcriptional regulator
At1D132_29740	COG1063	alcohol dehydrogenase
At1D132_29750	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_29770	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_29780	COG4573	that is required for full activity and stability of the Y subunit. Could have a chaperone-like function for the proper and stable folding of
At1D132_29790	COG1175	transmembrane transport
At1D132_29800	COG0395	ABC-type sugar transport system, permease component
At1D132_29830	COG0395	ABC-type sugar transport system, permease component
At1D132_29860	COG0626	cystathionine gamma-synthase activity
At1D132_29890	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D132_29910	COG1121	(ABC) transporter
At1D132_29920	COG0523	cobalamin synthesis protein
At1D132_29950	COG0523	cobalamin synthesis protein
At1D132_29960	COG1653	transport
At1D132_29970	COG1175	transmembrane transport
At1D132_29980	COG0395	ABC-type sugar transport system, permease component
At1D132_29990	COG3842	ATPase activity
At1D132_30020	COG3047	cAMP biosynthetic process
At1D132_30070	COG0583	DNA-binding transcription factor activity
At1D132_30080	COG1879	ABC-type sugar transport system periplasmic component
At1D132_30090	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_30100	COG1129	ABC transporter
At1D132_30120	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D132_30130	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_30140	COG3447	MASE1 domain protein
At1D132_30140	COG5001	Diguanylate cyclase
At1D132_30140	COG5002	protein histidine kinase activity
At1D132_30150	COG3257	ureidoglycine aminohydrolase activity
At1D132_30170	COG5001	Diguanylate cyclase
At1D132_30180	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D132_30200	COG0747	negative chemotaxis
At1D132_30210	COG0601	transmembrane transport
At1D132_30220	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_30240	COG4608	Belongs to the ABC transporter superfamily
At1D132_30250	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
At1D132_30270	COG0129	dihydroxy-acid dehydratase activity
At1D132_30290	COG1879	ABC-type sugar transport system periplasmic component
At1D132_30300	COG1129	ABC transporter
At1D132_30310	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_30320	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_30330	COG2186	Transcriptional regulator
At1D132_30350	COG0587	DNA-directed DNA polymerase activity
At1D132_30360	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D132_30410	COG0673	inositol 2-dehydrogenase activity
At1D132_30430	COG3842	ATPase activity
At1D132_30440	COG0395	ABC-type sugar transport system, permease component
At1D132_30450	COG1175	transmembrane transport
At1D132_30460	COG1653	transport
At1D132_30480	COG0673	inositol 2-dehydrogenase activity
At1D132_30510	COG5001	Diguanylate cyclase
At1D132_30520	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_30540	COG0851	Prevents the cell division inhibition by proteins MinC and MinD at internal division sites while permitting inhibition at polar sites. This ensures cell division at the proper site by restricting the formation of a division septum at the midpoint of the long axis of the cell
At1D132_30550	COG2894	cell division
At1D132_30560	COG0850	regulation of cytokinetic process
At1D132_30570	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D132_30580	COG2186	Transcriptional regulator
At1D132_30590	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_30610	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D132_30620	COG1063	alcohol dehydrogenase
At1D132_30630	COG1312	Catalyzes the dehydration of D-mannonate
At1D132_30660	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_30670	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D132_30680	COG4172	Belongs to the ABC transporter superfamily
At1D132_30690	COG1921	L-seryl-tRNASec selenium transferase activity
At1D132_30720	COG3964	amidohydrolase
At1D132_30740	COG0601	transmembrane transport
At1D132_30750	COG0747	negative chemotaxis
At1D132_30760	COG0438	transferase activity, transferring glycosyl groups
At1D132_30810	COG2911	Protein conserved in bacteria
At1D132_30810	COG3210	domain, Protein
At1D132_30830	COG4989	oxidoreductase activity
At1D132_30860	COG3842	ATPase activity
At1D132_30870	COG1653	transport
At1D132_30880	COG1175	transmembrane transport
At1D132_30890	COG0395	ABC-type sugar transport system, permease component
At1D132_30900	COG1501	Belongs to the glycosyl hydrolase 31 family
At1D132_30910	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_30920	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D132_30930	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
At1D132_30940	COG0352	thiamine-phosphate diphosphorylase activity
At1D132_30950	COG0351	phosphomethylpyrimidine kinase
At1D132_30960	COG1522	sequence-specific DNA binding
At1D132_30970	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
At1D132_30980	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_31010	COG2204	response regulator
At1D132_31020	COG4191	Histidine kinase
At1D132_31030	COG1301	dicarboxylic acid transport
At1D132_31050	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D132_31060	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_31120	COG1215	transferase activity, transferring glycosyl groups
At1D132_31140	COG2942	2-epimerase
At1D132_31210	COG2197	response regulator
At1D132_31270	COG3307	-O-antigen
At1D132_31280	COG1596	polysaccharide export
At1D132_31290	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
At1D132_31320	COG2972	Histidine kinase
At1D132_31320	COG0840	transmembrane signaling receptor activity
At1D132_31330	COG1388	LysM domain
At1D132_31330	COG1376	ErfK ybiS ycfS ynhG family protein
At1D132_31350	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_31370	COG2094	Belongs to the DNA glycosylase MPG family
At1D132_31400	COG1609	Transcriptional regulator
At1D132_31410	COG1653	transport
At1D132_31440	COG3842	ATPase activity
At1D132_31460	COG0673	inositol 2-dehydrogenase activity
At1D132_31470	COG0602	queuosine metabolic process
At1D132_31480	COG0720	synthase
At1D132_31490	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
At1D132_31500	COG0673	inositol 2-dehydrogenase activity
At1D132_31530	COG0395	ABC-type sugar transport system, permease component
At1D132_31580	COG0583	DNA-binding transcription factor activity
At1D132_31590	COG0280	phosphate acetyltransferase
At1D132_31590	COG0281	malic enzyme
At1D132_31620	COG0765	amino acid transport
At1D132_31630	COG1126	abc transporter atp-binding protein
At1D132_31640	COG2079	MmgE PrpD family protein
At1D132_31700	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
At1D132_31710	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
At1D132_31720	COG4663	Part of the tripartite ATP-independent periplasmic (TRAP) transport system
At1D132_31730	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
At1D132_31740	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_31750	COG1129	ABC transporter
At1D132_31770	COG1473	amidohydrolase
At1D132_31830	COG0583	DNA-binding transcription factor activity
At1D132_31840	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_31850	COG4618	COG4618 ABC-type protease lipase transport system, ATPase and permease components
At1D132_31890	COG1595	DNA-templated transcription, initiation
At1D132_31900	COG1120	ATPase activity
At1D132_31910	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_31940	COG2226	methyltransferase
At1D132_31960	COG1120	ATPase activity
At1D132_31970	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_32010	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D132_32030	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_32040	COG0473	3-isopropylmalate dehydrogenase activity
At1D132_32050	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_32060	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_32120	COG0601	transmembrane transport
At1D132_32130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_32140	COG4172	Belongs to the ABC transporter superfamily
At1D132_32150	COG1522	sequence-specific DNA binding
At1D132_32160	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_32190	COG1126	abc transporter atp-binding protein
At1D132_32210	COG1473	amidohydrolase
At1D132_32220	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32230	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32240	COG1959	2 iron, 2 sulfur cluster binding
At1D132_32260	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D132_32270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32300	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32310	COG1960	acyl-CoA dehydrogenase activity
At1D132_32380	COG0667	Aldo Keto reductase
At1D132_32400	COG0583	DNA-binding transcription factor activity
At1D132_32450	COG1473	amidohydrolase
At1D132_32460	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32500	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_32540	COG4608	Belongs to the ABC transporter superfamily
At1D132_32550	COG0444	Belongs to the ABC transporter superfamily
At1D132_32570	COG0601	transmembrane transport
At1D132_32590	COG2186	Transcriptional regulator
At1D132_32640	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D132_32640	COG3453	Protein conserved in bacteria
At1D132_32650	COG0640	Transcriptional regulator
At1D132_32670	COG2391	methyltransferase activity
At1D132_32680	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
At1D132_32700	COG0022	dehydrogenase e1 component
At1D132_32720	COG1960	acyl-CoA dehydrogenase activity
At1D132_32730	COG0183	Belongs to the thiolase family
At1D132_32750	COG1960	acyl-CoA dehydrogenase activity
At1D132_32760	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D132_32790	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
At1D132_32800	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
At1D132_32810	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
At1D132_32820	COG4952	isomerase
At1D132_32830	COG3347	Dehydrogenase
At1D132_32830	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_32840	COG1349	DNA-binding transcription factor activity
At1D132_32850	COG1879	ABC-type sugar transport system periplasmic component
At1D132_32860	COG1129	ABC transporter
At1D132_32870	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_32890	COG3254	rhamnose metabolic process
At1D132_32920	COG2264	protein methyltransferase activity
At1D132_32930	COG5001	Diguanylate cyclase
At1D132_32960	COG4335	DNA alkylation repair
At1D132_32970	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
At1D132_32980	COG4208	sulfate ABC transporter
At1D132_33000	COG4150	thiosulfate binding
At1D132_33040	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
At1D132_33060	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
At1D132_33080	COG1040	competence protein
At1D132_33090	COG2226	methyltransferase
At1D132_33120	COG0494	nUDIX hydrolase
At1D132_33140	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
At1D132_33150	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
At1D132_33160	COG0653	protein targeting
At1D132_33170	COG0697	spore germination
At1D132_33240	COG1312	Catalyzes the dehydration of D-mannonate
At1D132_33250	COG0246	Mannitol dehydrogenase
At1D132_33290	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_33300	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_33310	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_33320	COG1129	ABC transporter
At1D132_33380	COG2376	Dihydroxyacetone kinase
At1D132_33390	COG0471	metal ion transport
At1D132_33390	COG3273	potassium ion transport
At1D132_33430	COG0438	transferase activity, transferring glycosyl groups
At1D132_33450	COG2244	polysaccharide biosynthetic process
At1D132_33510	COG0489	protein tyrosine kinase activity
At1D132_33510	COG3206	protein involved in exopolysaccharide biosynthesis
At1D132_33550	COG0438	transferase activity, transferring glycosyl groups
At1D132_33560	COG0438	transferase activity, transferring glycosyl groups
At1D132_33590	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
At1D132_33600	COG2273	Hydrolase Family 16
At1D132_33600	COG2931	calcium- and calmodulin-responsive adenylate cyclase activity
At1D132_33690	COG1396	sequence-specific DNA binding
At1D132_33710	COG1129	ABC transporter
At1D132_33720	COG4214	carbohydrate transport
At1D132_33730	COG4213	ABC transporter substrate-binding protein
At1D132_33800	COG1859	Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP- ribose 1''-2''-cyclic phosphate (APPR P). May function as an ADP- ribosylase
At1D132_33820	COG0625	glutathione transferase activity
At1D132_33830	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
At1D132_33840	COG1396	sequence-specific DNA binding
At1D132_33840	COG3800	Transcriptional regulator
At1D132_33860	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D132_33880	COG0300	oxidoreductase activity
At1D132_33900	COG2096	Adenosyltransferase
At1D132_33920	COG2086	electron transfer activity
At1D132_33940	COG1250	3-hydroxyacyl-CoA dehydrogenase
At1D132_33950	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
At1D132_33960	COG0165	Argininosuccinate lyase
At1D132_34030	COG2884	Cell division ATP-binding protein ftsE
At1D132_34070	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
At1D132_34090	COG0287	Prephenate dehydrogenase
At1D132_34100	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
At1D132_34110	COG2226	methyltransferase
At1D132_34120	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
At1D132_34150	COG0227	Belongs to the bacterial ribosomal protein bL28 family
At1D132_34160	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
At1D132_34230	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
At1D132_34240	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
At1D132_34260	COG4974	Belongs to the 'phage' integrase family
At1D132_34270	COG0825	malonyl-CoA metabolic process
At1D132_34280	COG3034	peptidoglycan biosynthetic process
At1D132_34290	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
At1D132_34290	COG0425	Belongs to the sulfur carrier protein TusA family
At1D132_34300	COG0523	cobalamin synthesis protein
At1D132_34310	COG1686	Belongs to the peptidase S11 family
At1D132_34320	COG1473	amidohydrolase
At1D132_34340	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D132_34390	COG3501	Rhs element vgr protein
At1D132_34480	COG0456	acetyltransferase
At1D132_34540	COG2267	carboxylic ester hydrolase activity
At1D132_34560	COG1959	2 iron, 2 sulfur cluster binding
At1D132_34570	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
At1D132_34650	COG2226	methyltransferase
At1D132_34720	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
At1D132_34760	COG4774	siderophore transport
At1D132_34760	COG1629	transport
At1D132_34770	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
At1D132_34780	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_34790	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
At1D132_34800	COG1120	ATPase activity
At1D132_34830	COG4953	penicillin-binding protein 1C
At1D132_34840	COG2373	Large extracellular alpha-helical protein
At1D132_34850	COG2835	tetraacyldisaccharide 4'-kinase activity
At1D132_34870	COG3118	belongs to the thioredoxin family
At1D132_34890	COG0625	glutathione transferase activity
At1D132_34900	COG0482	sulfurtransferase activity
At1D132_34930	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D132_34960	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
At1D132_34970	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
At1D132_34980	COG0037	tRNA processing
At1D132_35000	COG2885	chlorophyll binding
At1D132_35010	COG0823	Involved in the tonB-independent uptake of proteins
At1D132_35050	COG0824	Thioesterase
At1D132_35070	COG0494	nUDIX hydrolase
At1D132_35100	COG2255	four-way junction helicase activity
At1D132_35110	COG0632	four-way junction helicase activity
At1D132_35120	COG0817	Nuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves the cruciform structure in supercoiled DNA by nicking to strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms and leaves a 5'-terminal phosphate and a 3'-terminal hydroxyl group
At1D132_35130	COG0840	transmembrane signaling receptor activity
At1D132_35140	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_35150	COG0217	transcriptional regulatory protein
At1D132_35180	COG1692	metallophosphoesterase
At1D132_35200	COG1253	flavin adenine dinucleotide binding
At1D132_35250	COG3263	regulation of cellular component size
At1D132_35260	COG0126	phosphoglycerate kinase activity
At1D132_35270	COG3588	fructose-bisphosphate aldolase
At1D132_35320	COG0254	rRNA binding
At1D132_35340	COG1132	(ABC) transporter
At1D132_35360	COG3573	Dehydrogenase
At1D132_35390	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_35450	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
At1D132_35460	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
At1D132_35470	COG0257	Belongs to the bacterial ribosomal protein bL36 family
At1D132_35480	COG0457	Tetratricopeptide repeat
At1D132_35490	COG3750	Belongs to the UPF0335 family
At1D132_35530	COG0469	pyruvate kinase activity
At1D132_35540	COG3108	Peptidase M15
At1D132_35550	COG2204	response regulator
At1D132_35560	COG1164	Oligoendopeptidase f
At1D132_35570	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
At1D132_35590	COG5310	Homospermidine synthase
At1D132_35610	COG0737	Belongs to the 5'-nucleotidase family
At1D132_35620	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
At1D132_35630	COG0330	HflC and HflK could
At1D132_35680	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D132_35690	COG2951	lytic endotransglycosylase activity
At1D132_35720	COG2205	protein histidine kinase activity
At1D132_35740	COG0070	glutamate synthase
At1D132_35740	COG0069	glutamate synthase activity
At1D132_35740	COG0067	glutamate synthase
At1D132_35760	COG0745	RESPONSE REGULATOR receiver
At1D132_35770	COG2205	protein histidine kinase activity
At1D132_35780	COG2156	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit acts as a catalytic chaperone that increases the ATP- binding affinity of the ATP-hydrolyzing subunit KdpB by the formation of a transient KdpB KdpC ATP ternary complex
At1D132_35790	COG2216	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit is responsible for energy coupling to the transport system
At1D132_35810	COG2060	Part of the high-affinity ATP-driven potassium transport (or Kdp) system, which catalyzes the hydrolysis of ATP coupled with the electrogenic transport of potassium into the cytoplasm. This subunit binds and transports the potassium across the cytoplasmic membrane
At1D132_35830	COG0252	asparaginase activity
At1D132_35850	COG1027	Aspartate ammonia-lyase
At1D132_35860	COG2186	Transcriptional regulator
At1D132_35940	COG4176	ABC-type proline glycine betaine transport system permease component
At1D132_35950	COG0517	IMP dehydrogenase activity
At1D132_35950	COG4175	Glycine betaine
At1D132_35960	COG2986	histidine ammonia-lyase
At1D132_35970	COG2814	Major facilitator Superfamily
At1D132_36000	COG1522	sequence-specific DNA binding
At1D132_36010	COG0583	DNA-binding transcription factor activity
At1D132_36020	COG0667	Aldo Keto reductase
At1D132_36040	COG1335	isochorismatase
At1D132_36060	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_36070	COG3254	rhamnose metabolic process
At1D132_36100	COG2721	sulfolactate sulfo-lyase activity
At1D132_36110	COG1129	ABC transporter
At1D132_36130	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_36140	COG1879	ABC-type sugar transport system periplasmic component
At1D132_36160	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
At1D132_36190	COG0583	DNA-binding transcription factor activity
At1D132_36220	COG0583	DNA-binding transcription factor activity
At1D132_36260	COG1607	acyl-coa hydrolase
At1D132_36300	COG2308	Evidence 4 Homologs of previously reported genes of
At1D132_36300	COG2307	Protein conserved in bacteria
At1D132_36330	COG0488	(ABC) transporter
At1D132_36340	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_36350	COG1304	FMN binding
At1D132_36370	COG1846	Transcriptional regulator
At1D132_36390	COG1070	Carbohydrate kinase
At1D132_36410	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D132_36420	COG0667	Aldo Keto reductase
At1D132_36440	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_36450	COG1129	ABC transporter
At1D132_36510	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D132_36540	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
At1D132_36570	COG0395	ABC-type sugar transport system, permease component
At1D132_36600	COG3842	ATPase activity
At1D132_36630	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
At1D132_36630	COG1648	precorrin-2 dehydrogenase activity
At1D132_36640	COG0243	molybdopterin cofactor binding
At1D132_36670	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
At1D132_36680	COG1116	anion transmembrane transporter activity
At1D132_36690	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_36700	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D132_36720	COG3707	response regulator
At1D132_36730	COG1802	Transcriptional regulator
At1D132_36740	COG1914	H( )-stimulated, divalent metal cation uptake system
At1D132_36750	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D132_36760	COG4336	lyase activity
At1D132_36770	COG1984	allophanate hydrolase subunit 2
At1D132_36780	COG4770	biotin carboxylase activity
At1D132_36790	COG0366	Alpha amylase catalytic
At1D132_36810	COG4771	TonB-dependent receptor
At1D132_36860	COG1414	Transcriptional regulator
At1D132_36870	COG1475	DNA binding
At1D132_36880	COG1192	Involved in chromosome partitioning
At1D132_36950	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
At1D132_36970	COG2986	histidine ammonia-lyase
At1D132_36980	COG1228	amidohydrolase
At1D132_36990	COG0402	S-adenosylhomocysteine deaminase activity
At1D132_37040	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_37080	COG0583	DNA-binding transcription factor activity
At1D132_37090	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_37100	COG3938	Belongs to the proline racemase family
At1D132_37110	COG4176	ABC-type proline glycine betaine transport system permease component
At1D132_37130	COG4175	Glycine betaine
At1D132_37130	COG3448	diguanylate cyclase activity
At1D132_37150	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_37160	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_37170	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_37220	COG0673	inositol 2-dehydrogenase activity
At1D132_37230	COG0673	inositol 2-dehydrogenase activity
At1D132_37250	COG1175	transmembrane transport
At1D132_37260	COG0395	ABC-type sugar transport system, permease component
At1D132_37270	COG3842	ATPase activity
At1D132_37290	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_37300	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D132_37350	COG0583	DNA-binding transcription factor activity
At1D132_37360	COG0346	lactoylglutathione lyase activity
At1D132_37390	COG1574	metal-dependent hydrolase with the TIM-barrel fold
At1D132_37410	COG2814	Major facilitator Superfamily
At1D132_37440	COG0583	DNA-binding transcription factor activity
At1D132_37450	COG0477	Major facilitator Superfamily
At1D132_37550	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
At1D132_37570	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
At1D132_37580	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D132_37590	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
At1D132_37660	COG0697	spore germination
At1D132_37670	COG0673	inositol 2-dehydrogenase activity
At1D132_37710	COG0477	Major facilitator Superfamily
At1D132_37720	COG0642	Histidine kinase
At1D132_37730	COG0745	RESPONSE REGULATOR receiver
At1D132_37740	COG2194	sulfuric ester hydrolase activity
At1D132_37760	COG0583	DNA-binding transcription factor activity
At1D132_37770	COG4774	siderophore transport
At1D132_37800	COG1120	ATPase activity
At1D132_37820	COG3474	cytochrome
At1D132_37830	COG2137	regulation of response to DNA damage stimulus
At1D132_37840	COG3386	PFAM SMP-30 Gluconolaconase
At1D132_37860	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_37870	COG1129	ABC transporter
At1D132_37880	COG1879	ABC-type sugar transport system periplasmic component
At1D132_37890	COG4585	Histidine kinase
At1D132_37900	COG2197	response regulator
At1D132_37920	COG2133	pyrroloquinoline quinone binding
At1D132_37940	COG0500	methyltransferase
At1D132_37950	COG0564	pseudouridine synthase activity
At1D132_37980	COG0517	IMP dehydrogenase activity
At1D132_37980	COG4175	Glycine betaine
At1D132_37990	COG4176	ABC-type proline glycine betaine transport system permease component
At1D132_38010	COG0784	Response regulator, receiver
At1D132_38010	COG4191	Histidine kinase
At1D132_38020	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
At1D132_38030	COG0489	protein tyrosine kinase activity
At1D132_38030	COG3206	protein involved in exopolysaccharide biosynthesis
At1D132_38040	COG1210	Utp--glucose-1-phosphate uridylyltransferase
At1D132_38050	COG1215	transferase activity, transferring glycosyl groups
At1D132_38060	COG1215	transferase activity, transferring glycosyl groups
At1D132_38070	COG1215	transferase activity, transferring glycosyl groups
At1D132_38080	COG0438	transferase activity, transferring glycosyl groups
At1D132_38090	COG2273	Hydrolase Family 16
At1D132_38100	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
At1D132_38110	COG2244	polysaccharide biosynthetic process
At1D132_38120	COG0463	Glycosyl transferase, family 2
At1D132_38130	COG2327	Polysaccharide pyruvyl transferase
At1D132_38140	COG1215	transferase activity, transferring glycosyl groups
At1D132_38180	COG0828	Belongs to the bacterial ribosomal protein bS21 family
At1D132_38190	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_38220	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D132_38220	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D132_38270	COG0033	Phosphoglucomutase
At1D132_38280	COG0297	glycogen (starch) synthase activity
At1D132_38290	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
At1D132_38300	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
At1D132_38310	COG0058	SHG alpha-glucan phosphorylase activity
At1D132_38330	COG1794	racemase activity, acting on amino acids and derivatives
At1D132_38340	COG1522	sequence-specific DNA binding
At1D132_38360	COG2084	Dehydrogenase
At1D132_38370	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_38380	COG1063	alcohol dehydrogenase
At1D132_38400	COG4988	ABC transporter
At1D132_38410	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
At1D132_38430	COG1294	oxidase, subunit
At1D132_38490	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
At1D132_38500	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
At1D132_38550	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
At1D132_38560	COG0539	negative regulation of cytoplasmic translation
At1D132_38620	COG4221	oxidoreductase activity
At1D132_38630	COG0006	proline dipeptidase activity
At1D132_38640	COG0747	negative chemotaxis
At1D132_38650	COG0601	transmembrane transport
At1D132_38660	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_38670	COG0444	Belongs to the ABC transporter superfamily
At1D132_38680	COG4608	Belongs to the ABC transporter superfamily
At1D132_38710	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_38760	COG0559	Belongs to the binding-protein-dependent transport system permease family
At1D132_38800	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
At1D132_38810	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_38840	COG4993	Dehydrogenase
At1D132_38850	COG3685	Protein conserved in bacteria
At1D132_38910	COG0693	protein deglycase activity
At1D132_38960	COG0189	ligase activity
At1D132_38970	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_38980	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
At1D132_39000	COG0583	DNA-binding transcription factor activity
At1D132_39010	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_39020	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
At1D132_39030	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_39040	COG1116	anion transmembrane transporter activity
At1D132_39060	COG1522	sequence-specific DNA binding
At1D132_39090	COG0784	Response regulator, receiver
At1D132_39110	COG3920	Histidine kinase
At1D132_39130	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D132_39160	COG0019	diaminopimelate decarboxylase activity
At1D132_39180	COG0513	Belongs to the DEAD box helicase family
At1D132_39190	COG0527	aspartate kinase activity
At1D132_39210	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
At1D132_39220	COG2890	protein-(glutamine-N5) methyltransferase activity
At1D132_39240	COG0542	response to heat
At1D132_39250	COG0739	heme binding
At1D132_39250	COG0741	lytic transglycosylase activity
At1D132_39250	COG1196	nuclear chromosome segregation
At1D132_39280	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_39300	COG2186	Transcriptional regulator
At1D132_39310	COG0747	negative chemotaxis
At1D132_39320	COG0601	transmembrane transport
At1D132_39330	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_39340	COG4172	Belongs to the ABC transporter superfamily
At1D132_39350	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_39420	COG1881	PFAM PEBP family protein
At1D132_39470	COG1278	Cold shock
At1D132_39480	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D132_39490	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D132_39500	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
At1D132_39540	COG0300	oxidoreductase activity
At1D132_39560	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D132_39560	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D132_39570	COG4311	Sarcosine oxidase, delta subunit
At1D132_39580	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_39590	COG4977	sequence-specific DNA binding
At1D132_39610	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
At1D132_39620	COG2218	PFAM glutamate synthase alpha subunit domain protein
At1D132_39630	COG0069	glutamate synthase activity
At1D132_39640	COG0174	glutamine synthetase
At1D132_39690	COG1126	abc transporter atp-binding protein
At1D132_39700	COG1454	alcohol dehydrogenase
At1D132_39720	COG2267	carboxylic ester hydrolase activity
At1D132_39740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
At1D132_39750	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_39780	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_39790	COG1177	transmembrane transport
At1D132_39820	COG3842	ATPase activity
At1D132_39830	COG0395	ABC-type sugar transport system, permease component
At1D132_39860	COG3976	FMN-binding domain protein
At1D132_39860	COG1053	succinate dehydrogenase
At1D132_39870	COG1609	Transcriptional regulator
At1D132_39890	COG4172	Belongs to the ABC transporter superfamily
At1D132_39900	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_39910	COG0601	transmembrane transport
At1D132_39920	COG4166	transmembrane transport
At1D132_39930	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_39960	COG2828	Protein conserved in bacteria
At1D132_39970	COG0583	DNA-binding transcription factor activity
At1D132_39990	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D132_40010	COG1280	lysine exporter protein (LysE YggA)
At1D132_40040	COG0583	DNA-binding transcription factor activity
At1D132_40060	COG0511	ligase activity, forming carbon-carbon bonds
At1D132_40070	COG0439	Biotin carboxylase
At1D132_40100	COG1984	allophanate hydrolase subunit 2
At1D132_40110	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
At1D132_40140	COG4221	oxidoreductase activity
At1D132_40150	COG0765	amino acid transport
At1D132_40160	COG0765	amino acid transport
At1D132_40170	COG1126	abc transporter atp-binding protein
At1D132_40180	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_40190	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
At1D132_40220	COG0583	DNA-binding transcription factor activity
At1D132_40230	COG1062	S-(hydroxymethyl)glutathione dehydrogenase activity
At1D132_40240	COG0583	DNA-binding transcription factor activity
At1D132_40250	COG2814	Major facilitator Superfamily
At1D132_40280	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D132_40300	COG2207	Transcriptional regulator
At1D132_40310	COG0668	transmembrane transport
At1D132_40330	COG4566	intracellular signal transduction
At1D132_40370	COG0668	transmembrane transport
At1D132_40380	COG4191	Histidine kinase
At1D132_40390	COG0784	Response regulator, receiver
At1D132_40390	COG2205	protein histidine kinase activity
At1D132_40390	COG5002	protein histidine kinase activity
At1D132_40420	COG0047	phosphoribosylformylglycinamidine synthase activity
At1D132_40430	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_40450	COG0446	pyridine nucleotide-disulphide oxidoreductase
At1D132_40450	COG0404	The glycine cleavage system catalyzes the degradation of glycine
At1D132_40470	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
At1D132_40500	COG1309	transcriptional regulator
At1D132_40510	COG1063	alcohol dehydrogenase
At1D132_40530	COG1879	ABC-type sugar transport system periplasmic component
At1D132_40550	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_40800	COG3501	Rhs element vgr protein
At1D132_40850	COG5001	Diguanylate cyclase
At1D132_40870	COG1253	flavin adenine dinucleotide binding
At1D132_40900	COG3842	ATPase activity
At1D132_40910	COG0395	ABC-type sugar transport system, permease component
At1D132_40920	COG1175	transmembrane transport
At1D132_40930	COG1653	transport
At1D132_40950	COG0673	inositol 2-dehydrogenase activity
At1D132_40960	COG1609	Transcriptional regulator
At1D132_40990	COG0583	DNA-binding transcription factor activity
At1D132_41010	COG1879	ABC-type sugar transport system periplasmic component
At1D132_41020	COG1129	ABC transporter
At1D132_41030	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_41040	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_41050	COG1609	Transcriptional regulator
At1D132_41070	COG0673	inositol 2-dehydrogenase activity
At1D132_41120	COG3189	MarR family transcriptional regulator
At1D132_41150	COG1960	acyl-CoA dehydrogenase activity
At1D132_41160	COG0583	DNA-binding transcription factor activity
At1D132_41170	COG1609	Transcriptional regulator
At1D132_41190	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_41210	COG3842	ATPase activity
At1D132_41230	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
At1D132_41250	COG1473	amidohydrolase
At1D132_41280	COG0747	negative chemotaxis
At1D132_41290	COG0601	transmembrane transport
At1D132_41310	COG0444	Belongs to the ABC transporter superfamily
At1D132_41320	COG4608	Belongs to the ABC transporter superfamily
At1D132_41330	COG0583	DNA-binding transcription factor activity
At1D132_41340	COG0747	negative chemotaxis
At1D132_41360	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_41370	COG0154	amidase activity
At1D132_41380	COG0693	protein deglycase activity
At1D132_41410	COG0601	transmembrane transport
At1D132_41430	COG1473	amidohydrolase
At1D132_41440	COG4172	Belongs to the ABC transporter superfamily
At1D132_41450	COG2390	Transcriptional regulator
At1D132_41470	COG1175	transmembrane transport
At1D132_41480	COG0395	ABC-type sugar transport system, permease component
At1D132_41510	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
At1D132_41520	COG1069	ribulokinase activity
At1D132_41530	COG1737	Transcriptional regulator
At1D132_41570	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
At1D132_41590	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
At1D132_41600	COG1414	Transcriptional regulator
At1D132_41610	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_41630	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D132_41640	COG1108	ABC-type Mn2 Zn2 transport systems permease components
At1D132_41650	COG1121	(ABC) transporter
At1D132_41660	COG0803	Belongs to the bacterial solute-binding protein 9 family
At1D132_41680	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
At1D132_41690	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
At1D132_41700	COG3273	potassium ion transport
At1D132_41700	COG0471	metal ion transport
At1D132_41710	COG1253	flavin adenine dinucleotide binding
At1D132_41720	COG1309	transcriptional regulator
At1D132_41760	COG1609	Transcriptional regulator
At1D132_41770	COG1070	Carbohydrate kinase
At1D132_41780	COG2115	Belongs to the xylose isomerase family
At1D132_41810	COG0778	Nitroreductase
At1D132_41820	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
At1D132_41830	COG2011	ABC-type metal ion transport system permease component
At1D132_41850	COG3300	MHYT domain
At1D132_41850	COG5001	Diguanylate cyclase
At1D132_41890	COG0800	Aldolase
At1D132_41930	COG2215	Belongs to the NiCoT transporter (TC 2.A.52) family
At1D132_42000	COG0523	cobalamin synthesis protein
At1D132_42020	COG1846	Transcriptional regulator
At1D132_42030	COG1609	Transcriptional regulator
At1D132_42040	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_42050	COG0673	inositol 2-dehydrogenase activity
At1D132_42060	COG3718	enzyme involved in inositol metabolism
At1D132_42080	COG3962	Belongs to the TPP enzyme family
At1D132_42090	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_42160	COG0683	leucine binding
At1D132_42190	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_42210	COG0747	negative chemotaxis
At1D132_42260	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
At1D132_42270	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
At1D132_42280	COG1126	abc transporter atp-binding protein
At1D132_42290	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_42300	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_42310	COG0765	amino acid transport
At1D132_42320	COG0765	amino acid transport
At1D132_42340	COG3485	protocatechuate 3,4-dioxygenase
At1D132_42350	COG3485	protocatechuate 3,4-dioxygenase
At1D132_42360	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D132_42380	COG0583	DNA-binding transcription factor activity
At1D132_42410	COG1414	Transcriptional regulator
At1D132_42430	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
At1D132_42440	COG0183	Belongs to the thiolase family
At1D132_42450	COG1609	Transcriptional regulator
At1D132_42480	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_42490	COG0673	inositol 2-dehydrogenase activity
At1D132_42510	COG1609	Transcriptional regulator
At1D132_42520	COG0395	ABC-type sugar transport system, permease component
At1D132_42530	COG1175	transmembrane transport
At1D132_42540	COG3842	ATPase activity
At1D132_42560	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
At1D132_42600	COG1940	carbohydrate kinase activity
At1D132_42620	COG3842	ATPase activity
At1D132_42630	COG4149	molybdate abc transporter
At1D132_42650	COG0584	glycerophosphoryl diester phosphodiesterase
At1D132_42660	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_42670	COG0300	oxidoreductase activity
At1D132_42710	COG3842	ATPase activity
At1D132_42820	COG0385	Bile acid
At1D132_42830	COG0667	Aldo Keto reductase
At1D132_42840	COG0583	DNA-binding transcription factor activity
At1D132_42860	COG0179	Fumarylacetoacetate (FAA) hydrolase
At1D132_42880	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_42900	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
At1D132_42930	COG1132	(ABC) transporter
At1D132_42960	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D132_42970	COG3754	Rhamnan synthesis protein F
At1D132_43000	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
At1D132_43010	COG1091	dTDP-4-dehydrorhamnose reductase activity
At1D132_43020	COG1088	dTDP-glucose 4,6-dehydratase activity
At1D132_43030	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
At1D132_43040	COG0210	DNA helicase
At1D132_43060	COG1233	COG1233 Phytoene dehydrogenase and related
At1D132_43090	COG0395	ABC-type sugar transport system, permease component
At1D132_43100	COG3842	ATPase activity
At1D132_43120	COG0444	Belongs to the ABC transporter superfamily
At1D132_43130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_43140	COG0601	transmembrane transport
At1D132_43150	COG2186	Transcriptional regulator
At1D132_43160	COG1312	Catalyzes the dehydration of D-mannonate
At1D132_43170	COG0747	negative chemotaxis
At1D132_43190	COG3300	MHYT domain
At1D132_43190	COG5001	Diguanylate cyclase
At1D132_43200	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_43220	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D132_43240	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
At1D132_43250	COG0306	phosphate transporter
At1D132_43260	COG1392	Phosphate transport regulator
At1D132_43300	COG0376	Bifunctional enzyme with both catalase and broad- spectrum peroxidase activity
At1D132_43330	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_43360	COG3119	arylsulfatase activity
At1D132_43370	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
At1D132_43380	COG3842	ATPase activity
At1D132_43390	COG0165	Argininosuccinate lyase
At1D132_43400	COG0395	ABC-type sugar transport system, permease component
At1D132_43410	COG1175	transmembrane transport
At1D132_43420	COG2182	Extracellular solute-binding protein
At1D132_43430	COG1940	carbohydrate kinase activity
At1D132_43480	COG1486	melibiose metabolic process
At1D132_43490	COG0747	negative chemotaxis
At1D132_43500	COG0601	transmembrane transport
At1D132_43510	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_43520	COG4172	Belongs to the ABC transporter superfamily
At1D132_43530	COG1486	melibiose metabolic process
At1D132_43540	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_43550	COG0842	Transport permease protein
At1D132_43550	COG1129	ABC transporter
At1D132_43560	COG0842	Transport permease protein
At1D132_43590	COG0784	Response regulator, receiver
At1D132_43600	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
At1D132_43620	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_43630	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
At1D132_43660	COG0765	amino acid transport
At1D132_43680	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
At1D132_43700	COG3938	Belongs to the proline racemase family
At1D132_43730	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_43750	COG0765	amino acid transport
At1D132_43770	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
At1D132_43800	COG0402	S-adenosylhomocysteine deaminase activity
At1D132_43830	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_43850	COG0402	S-adenosylhomocysteine deaminase activity
At1D132_43860	COG0444	Belongs to the ABC transporter superfamily
At1D132_43870	COG4608	Belongs to the ABC transporter superfamily
At1D132_43880	COG1802	Transcriptional regulator
At1D132_43890	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
At1D132_43940	COG3383	formate dehydrogenase (NAD+) activity
At1D132_43970	COG2770	Histidine kinase
At1D132_43970	COG2205	protein histidine kinase activity
At1D132_43980	COG0745	RESPONSE REGULATOR receiver
At1D132_44020	COG3237	CsbD-like
At1D132_44030	COG2197	response regulator
At1D132_44040	COG2186	Transcriptional regulator
At1D132_44050	COG0747	negative chemotaxis
At1D132_44060	COG0601	transmembrane transport
At1D132_44080	COG0405	Gamma-glutamyltransferase
At1D132_44100	COG3237	CsbD-like
At1D132_44120	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
At1D132_44130	COG3181	Tripartite tricarboxylate transporter family receptor
At1D132_44140	COG5265	(ABC) transporter
At1D132_44150	COG0488	(ABC) transporter
At1D132_44200	COG1049	propionate catabolic process, 2-methylcitrate cycle
At1D132_44210	COG0840	transmembrane signaling receptor activity
At1D132_44230	COG0110	maltose O-acetyltransferase activity
At1D132_44250	COG1063	alcohol dehydrogenase
At1D132_44260	COG3284	Transcriptional regulator
At1D132_44300	COG1129	ABC transporter
At1D132_44310	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_44320	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_44330	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_44350	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_44370	COG1126	abc transporter atp-binding protein
At1D132_44380	COG0765	amino acid transport
At1D132_44390	COG0765	amino acid transport
At1D132_44400	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_44410	COG3608	succinylglutamate desuccinylase aspartoacylase
At1D132_44420	COG0006	proline dipeptidase activity
At1D132_44430	COG2423	ornithine cyclodeaminase activity
At1D132_44440	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
At1D132_44450	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
At1D132_44460	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
At1D132_44470	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_44480	COG1522	sequence-specific DNA binding
At1D132_44490	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
At1D132_44550	COG2140	Oxalate decarboxylase
At1D132_44580	COG4566	intracellular signal transduction
At1D132_44600	COG0243	molybdopterin cofactor binding
At1D132_44610	COG0783	Belongs to the Dps family
At1D132_44650	COG0596	Alpha beta hydrolase
At1D132_44680	COG1764	response to oxidative stress
At1D132_44690	COG2205	protein histidine kinase activity
At1D132_44700	COG0745	RESPONSE REGULATOR receiver
At1D132_44780	COG4191	Histidine kinase
At1D132_44780	COG0784	Response regulator, receiver
At1D132_44790	COG0745	RESPONSE REGULATOR receiver
At1D132_44800	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D132_44810	COG1840	ABC-type Fe3 transport system, periplasmic component
At1D132_44830	COG3842	ATPase activity
At1D132_44840	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_44870	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_44920	COG2197	response regulator
At1D132_44930	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
At1D132_44940	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
At1D132_44960	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
At1D132_44970	COG4310	Domain of unknown function (DUF2172)
At1D132_44980	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
At1D132_44990	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
At1D132_45000	COG2197	response regulator
At1D132_45010	COG4566	intracellular signal transduction
At1D132_45070	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
At1D132_45110	COG0438	transferase activity, transferring glycosyl groups
At1D132_45140	COG1522	sequence-specific DNA binding
At1D132_45180	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_45210	COG1414	Transcriptional regulator
At1D132_45230	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
At1D132_45250	COG0582	viral genome integration into host DNA
At1D132_45290	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
At1D132_45350	COG1349	DNA-binding transcription factor activity
At1D132_45360	COG1879	ABC-type sugar transport system periplasmic component
At1D132_45370	COG1129	ABC transporter
At1D132_45380	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_45390	COG1172	Belongs to the binding-protein-dependent transport system permease family
At1D132_45420	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
At1D132_45430	COG1012	belongs to the aldehyde dehydrogenase family
At1D132_45450	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
At1D132_45510	COG0406	alpha-ribazole phosphatase activity
At1D132_45550	COG4529	Protein conserved in bacteria
At1D132_45650	COG3422	double-strand break repair
At1D132_45670	COG3501	Rhs element vgr protein
At1D132_45740	COG1192	Involved in chromosome partitioning
At1D132_45750	COG1475	DNA binding
At1D132_45760	COG0640	Transcriptional regulator
At1D132_45790	COG1126	abc transporter atp-binding protein
At1D132_45800	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
At1D132_45830	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
At1D132_45850	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D132_45930	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
At1D132_45970	COG1074	ATP-dependent DNA helicase activity
At1D132_46090	COG3177	Filamentation induced by cAMP protein fic
At1D132_46120	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
At1D132_46130	COG0840	transmembrane signaling receptor activity
At1D132_46150	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
At1D132_46200	COG3842	ATPase activity
At1D132_46220	COG2390	Transcriptional regulator
At1D132_46350	COG0714	Associated with various cellular activities
At1D132_46360	COG3256	nitric oxide reductase
At1D132_46390	COG1845	cytochrome c oxidase, subunit III
At1D132_46420	COG0163	prenyltransferase activity
At1D132_46430	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
At1D132_46440	COG3189	MarR family transcriptional regulator
At1D132_46510	COG4525	Part of the ABC transporter complex TauABC involved in taurine import. Responsible for energy coupling to the transport system
At1D132_46530	COG4459	periplasmic nitrate reductase
At1D132_46560	COG0243	molybdopterin cofactor binding
At1D132_46580	COG3005	denitrification pathway
At1D132_46610	COG4691	Plasmid stability protein
At1D132_46620	COG1487	ribonuclease activity
At1D132_46640	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_46650	COG1136	(ABC) transporter
At1D132_46710	COG2076	Multidrug Resistance protein
At1D132_46730	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
At1D132_46760	COG2205	protein histidine kinase activity
At1D132_46790	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
At1D132_46800	COG0577	efflux transmembrane transporter activity
At1D132_46800	COG1136	(ABC) transporter
At1D132_46810	COG0454	-acetyltransferase
At1D132_46840	COG5002	protein histidine kinase activity
At1D132_46850	COG0745	RESPONSE REGULATOR receiver
At1D132_46870	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
At1D132_46890	COG2020	methyltransferase activity
At1D132_46920	COG1309	transcriptional regulator
At1D132_47050	COG0395	ABC-type sugar transport system, permease component
At1D132_47070	COG3842	ATPase activity
At1D132_47080	COG1737	Transcriptional regulator
At1D132_47090	COG1846	Transcriptional regulator
At1D132_47120	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_47150	COG0601	transmembrane transport
At1D132_47160	COG0747	negative chemotaxis
At1D132_47180	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
At1D132_47190	COG1454	alcohol dehydrogenase
At1D132_47200	COG2186	Transcriptional regulator
At1D132_47210	COG3395	kinase activity
At1D132_47220	COG1609	Transcriptional regulator
At1D132_47300	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
At1D132_47310	COG3920	Histidine kinase
At1D132_47390	COG2268	Band 7 protein
At1D132_47420	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_47430	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_47440	COG0583	DNA-binding transcription factor activity
At1D132_47480	COG0583	DNA-binding transcription factor activity
At1D132_47500	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_47510	COG1177	transmembrane transport
At1D132_47520	COG3842	ATPase activity
At1D132_47530	COG2072	flavoprotein involved in K transport
At1D132_47570	COG0534	Mate efflux family protein
At1D132_47610	COG1609	Transcriptional regulator
At1D132_47620	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_47630	COG0673	inositol 2-dehydrogenase activity
At1D132_47640	COG1082	Xylose isomerase domain protein TIM barrel
At1D132_47660	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_47700	COG2972	Histidine kinase
At1D132_47700	COG0840	transmembrane signaling receptor activity
At1D132_47720	COG4221	oxidoreductase activity
At1D132_47730	COG1902	pentaerythritol trinitrate reductase activity
At1D132_47760	COG3831	ATPase activity
At1D132_47770	COG0071	Belongs to the small heat shock protein (HSP20) family
At1D132_47830	COG3734	2-keto-3-deoxy-galactonokinase
At1D132_47840	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
At1D132_47850	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_47870	COG1175	transmembrane transport
At1D132_47880	COG0395	ABC-type sugar transport system, permease component
At1D132_47890	COG3842	ATPase activity
At1D132_47900	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
At1D132_47910	COG1414	Transcriptional regulator
At1D132_47920	COG1028	Short-chain dehydrogenase reductase Sdr
At1D132_47930	COG3158	transport of potassium into the cell
At1D132_47950	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
At1D132_47970	COG2826	transposase and inactivated derivatives, IS30 family
At1D132_48010	COG0504	CTP synthase activity
At1D132_48020	COG0006	proline dipeptidase activity
At1D132_48030	COG4948	Mandelate Racemase Muconate Lactonizing
At1D132_48040	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
At1D132_48060	COG0765	amino acid transport
At1D132_48160	COG0753	catalase activity
At1D132_48190	COG3685	Protein conserved in bacteria
At1D132_48220	COG1309	transcriptional regulator
At1D132_48230	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
At1D132_48240	COG2080	2 iron, 2 sulfur cluster binding
At1D132_48250	COG1319	Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM
At1D132_48260	COG1529	Aldehyde oxidase and xanthine dehydrogenase
At1D132_48270	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
At1D132_48320	COG0745	RESPONSE REGULATOR receiver
At1D132_48330	COG2205	protein histidine kinase activity
At1D132_48360	COG0784	Response regulator, receiver
At1D132_48360	COG4191	Histidine kinase
At1D132_48370	COG0467	Core component of the KaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. Binds to DNA. The KaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction
At1D132_48400	COG1278	Cold shock
At1D132_48450	COG0410	ABC transporter
At1D132_48520	COG3920	Histidine kinase
At1D132_48580	COG0411	ABC transporter
At1D132_48610	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
At1D132_48630	COG1566	PFAM secretion protein HlyD family protein
At1D132_48670	COG2207	Transcriptional regulator
At1D132_48730	COG1192	Involved in chromosome partitioning
At1D132_48740	COG1475	DNA binding
At1D132_48750	COG0640	Transcriptional regulator
At1D132_48980	COG3620	sequence-specific DNA binding
At1D132_48990	COG3550	peptidyl-serine autophosphorylation
At1D132_49050	COG4584	PFAM Integrase catalytic
At1D132_49050	COG2390	Transcriptional regulator
At1D132_49080	COG1858	cytochrome C peroxidase
At1D132_49100	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
At1D132_49110	COG0583	DNA-binding transcription factor activity
At1D132_49130	COG1733	regulation of RNA biosynthetic process
At1D132_49190	COG1196	nuclear chromosome segregation
At1D132_49190	COG0739	heme binding
At1D132_49190	COG0741	lytic transglycosylase activity
At1D132_49220	COG3451	type IV secretory pathway VirB4
At1D132_49280	COG0630	type IV secretory pathway, VirB11 components, and related ATPases involved in Archaeal flagella biosynthesis
At1D132_49310	COG1192	Involved in chromosome partitioning
At1D132_49320	COG3505	Type IV secretory pathway VirD4
At1D132_49570	COG3436	PFAM IS66 Orf2 family protein
At1D132_49580	COG4372	Transposase
At1D132_49590	COG1940	carbohydrate kinase activity
At1D132_49600	COG1653	transport
At1D132_49610	COG1175	transmembrane transport
At1D132_49620	COG0395	ABC-type sugar transport system, permease component
At1D132_49670	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
At1D132_49680	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
At1D132_49710	COG3831	ATPase activity
At1D132_49870	COG3701	Conjugal transfer protein
At1D132_49880	COG3846	protein secretion by the type IV secretion system
At1D132_49900	COG5314	conjugation
At1D132_49910	COG3451	type IV secretory pathway VirB4
At1D132_49940	COG4962	Type ii secretion system protein e
At1D132_49960	COG1192	Involved in chromosome partitioning
At1D132_49970	COG1475	DNA binding
At1D132_49980	COG0640	Transcriptional regulator
At1D132_49990	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
At1D132_50040	COG2211	Major facilitator Superfamily
At1D132_50130	COG4974	Belongs to the 'phage' integrase family
At1D132_50140	COG1051	belongs to the nudix hydrolase family
At1D132_50230	COG1475	DNA binding
At1D132_50280	COG2824	Alkylphosphonate utilization operon protein PhnA
At1D132_50320	COG1280	lysine exporter protein (LysE YggA)
At1D132_50410	COG0494	nUDIX hydrolase
At1D132_50440	COG5489	Protein of unknown function (DUF736)
At1D132_50620	COG1283	sodium-dependent phosphate transmembrane transporter activity
At1D132_50640	COG0747	negative chemotaxis
At1D132_50670	COG0601	transmembrane transport
At1D132_50680	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_50690	COG0584	glycerophosphoryl diester phosphodiesterase
At1D132_50700	COG0483	inositol monophosphate 1-phosphatase activity
At1D132_50730	COG4584	PFAM Integrase catalytic
At1D132_50770	COG3547	Transposase (IS116 IS110 IS902 family)
At1D132_50830	COG3161	chorismate lyase activity
At1D132_51280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_51290	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
At1D132_51350	COG0583	DNA-binding transcription factor activity
At1D132_51360	COG0747	negative chemotaxis
At1D132_51390	COG0252	asparaginase activity
At1D132_51400	COG0583	DNA-binding transcription factor activity
At1D132_51420	COG1176	ABC-type spermidine putrescine transport system, permease component I
At1D132_51490	COG3701	Conjugal transfer protein
At1D132_51500	COG3846	protein secretion by the type IV secretion system
At1D132_51520	COG5314	conjugation
At1D132_51530	COG3451	type IV secretory pathway VirB4
At1D132_51560	COG4962	Type ii secretion system protein e