locus-tag class description EML540_00005 PF11638 DnaA N-terminal domain EML540_00005 PF08299 Bacterial dnaA protein helix-turn-helix EML540_00005 PF00308 Bacterial dnaA protein EML540_00010 PF04055 Radical SAM superfamily EML540_00010 PF06969 HemN C-terminal domain EML540_00015 PF01725 Ham1 family EML540_00020 PF03725 3' exoribonuclease family, domain 2 EML540_00020 PF01138 3' exoribonuclease family, domain 1 EML540_00025 PF01628 HrcA protein C terminal domain EML540_00030 PF01025 GrpE EML540_00035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EML540_00040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EML540_00040 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EML540_00045 PF04963 Sigma-54 factor, core binding domain EML540_00045 PF04552 Sigma-54, DNA binding domain EML540_00045 PF00309 Sigma-54 factor, Activator interacting domain (AID) EML540_00050 PF00005 ABC transporter EML540_00055 PF03968 OstA-like protein EML540_00065 PF01343 Peptidase family S49 EML540_00070 PF00216 Bacterial DNA-binding protein EML540_00080 PF01170 Putative RNA methylase family UPF0020 EML540_00080 PF02926 THUMP domain EML540_00080 PF10672 S-adenosylmethionine-dependent methyltransferase EML540_00085 PF08032 RNA 2'-O ribose methyltransferase substrate binding EML540_00085 PF00588 SpoU rRNA Methylase family EML540_00090 PF01252 Signal peptidase (SPase) II EML540_00095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML540_00095 PF00072 Response regulator receiver domain EML540_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_00095 PF01627 Hpt domain EML540_00095 PF00672 HAMP domain EML540_00095 PF00512 His Kinase A (phospho-acceptor) domain EML540_00105 PF05188 MutS domain II EML540_00105 PF01624 MutS domain I EML540_00105 PF05192 MutS domain III EML540_00105 PF05190 MutS family domain IV EML540_00105 PF00488 MutS domain V EML540_00110 PF08335 GlnD PII-uridylyltransferase EML540_00110 PF01909 Nucleotidyltransferase domain EML540_00110 PF01966 HD domain EML540_00110 PF01842 ACT domain EML540_00115 PF03023 Lipid II flippase MurJ EML540_00125 PF00579 tRNA synthetases class I (W and Y) EML540_00135 PF01106 NifU-like domain EML540_00140 PF00814 Glycoprotease family EML540_00150 PF01475 Ferric uptake regulator family EML540_00155 PF01553 Acyltransferase EML540_00160 PF01938 TRAM domain EML540_00160 PF00919 Uncharacterized protein family UPF0004 EML540_00160 PF04055 Radical SAM superfamily EML540_00165 PF02562 PhoH-like protein EML540_00170 PF02130 Uncharacterized protein family UPF0054 EML540_00175 PF00571 CBS domain EML540_00175 PF03471 Transporter associated domain EML540_00180 PF00795 Carbon-nitrogen hydrolase EML540_00185 PF01381 Helix-turn-helix EML540_00190 PF00438 S-adenosylmethionine synthetase, N-terminal domain EML540_00190 PF02772 S-adenosylmethionine synthetase, central domain EML540_00190 PF02773 S-adenosylmethionine synthetase, C-terminal domain EML540_00195 PF02390 Putative methyltransferase EML540_00200 PF00294 pfkB family carbohydrate kinase EML540_00205 PF02646 RmuC family EML540_00210 PF01327 Polypeptide deformylase EML540_00215 PF00551 Formyl transferase EML540_00215 PF02911 Formyl transferase, C-terminal domain EML540_00220 PF01416 tRNA pseudouridine synthase EML540_00230 PF01546 Peptidase family M20/M25/M40 EML540_00230 PF07687 Peptidase dimerisation domain EML540_00235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EML540_00235 PF14602 Hexapeptide repeat of succinyl-transferase EML540_00235 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_00245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_00245 PF00672 HAMP domain EML540_00250 PF01156 Inosine-uridine preferring nucleoside hydrolase EML540_00255 PF00011 Hsp20/alpha crystallin family EML540_00280 PF00696 Amino acid kinase family EML540_00290 PF01926 50S ribosome-binding GTPase EML540_00295 PF14849 YidC periplasmic domain EML540_00295 PF02096 60Kd inner membrane protein EML540_00300 PF00825 Ribonuclease P EML540_00305 PF00468 Ribosomal protein L34 EML540_00310 PF02203 Tar ligand binding domain homologue EML540_00310 PF00672 HAMP domain EML540_00310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_00315 PF00512 His Kinase A (phospho-acceptor) domain EML540_00315 PF00672 HAMP domain EML540_00325 PF01209 ubiE/COQ5 methyltransferase family EML540_00330 PF00005 ABC transporter EML540_00335 PF00528 Binding-protein-dependent transport system inner membrane component EML540_00340 PF00528 Binding-protein-dependent transport system inner membrane component EML540_00350 PF00149 Calcineurin-like phosphoesterase EML540_00355 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EML540_00355 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EML540_00365 PF05544 Proline racemase EML540_00370 PF01979 Amidohydrolase family EML540_00375 PF00156 Phosphoribosyl transferase domain EML540_00380 PF00294 pfkB family carbohydrate kinase EML540_00395 PF00342 Phosphoglucose isomerase EML540_00400 PF00501 AMP-binding enzyme EML540_00400 PF13193 AMP-binding enzyme C-terminal domain EML540_00405 PF00005 ABC transporter EML540_00405 PF08402 TOBE domain EML540_00415 PF00528 Binding-protein-dependent transport system inner membrane component EML540_00420 PF07715 TonB-dependent Receptor Plug Domain EML540_00420 PF00593 TonB dependent receptor EML540_00440 PF01679 Proteolipid membrane potential modulator EML540_00460 PF03976 Polyphosphate kinase 2 (PPK2) EML540_00465 PF00989 PAS fold EML540_00465 PF16736 Single Cache-like EML540_00465 PF00512 His Kinase A (phospho-acceptor) domain EML540_00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_00470 PF12849 PBP superfamily domain EML540_00475 PF00528 Binding-protein-dependent transport system inner membrane component EML540_00480 PF00528 Binding-protein-dependent transport system inner membrane component EML540_00485 PF00005 ABC transporter EML540_00490 PF01895 PhoU domain EML540_00495 PF00486 Transcriptional regulatory protein, C terminal EML540_00495 PF00072 Response regulator receiver domain EML540_00505 PF00202 Aminotransferase class-III EML540_00510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EML540_00510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EML540_00515 PF01430 Hsp33 protein EML540_00520 PF04379 ApaG domain EML540_00525 PF01053 Cys/Met metabolism PLP-dependent enzyme EML540_00530 PF00692 dUTPase EML540_00550 PF00589 Phage integrase family EML540_00705 PF07484 Phage Tail Collar Domain EML540_00780 PF02469 Fasciclin domain EML540_00800 PF00230 Major intrinsic protein EML540_00845 PF00196 Bacterial regulatory proteins, luxR family EML540_00845 PF00072 Response regulator receiver domain EML540_00855 PF01180 Dihydroorotate dehydrogenase EML540_00870 PF08241 Methyltransferase domain EML540_00890 PF02082 Transcriptional regulator EML540_00895 PF00271 Helicase conserved C-terminal domain EML540_00895 PF08494 DEAD/H associated EML540_00895 PF00270 DEAD/DEAH box helicase EML540_00915 PF01925 Sulfite exporter TauE/SafE EML540_00925 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_00925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_00925 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML540_00925 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_00930 PF00108 Thiolase, N-terminal domain EML540_00930 PF02803 Thiolase, C-terminal domain EML540_00935 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EML540_00935 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EML540_00935 PF00378 Enoyl-CoA hydratase/isomerase EML540_00955 PF03334 Na+/H+ antiporter subunit EML540_00960 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EML540_00965 PF00361 Proton-conducting membrane transporter EML540_00970 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML540_00975 PF00361 Proton-conducting membrane transporter EML540_00975 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EML540_00975 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML540_00975 PF13244 Domain of unknown function (DUF4040) EML540_00985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_00995 PF00072 Response regulator receiver domain EML540_01000 PF01584 CheW-like domain EML540_01000 PF01627 Hpt domain EML540_01000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_01000 PF02895 Signal transducing histidine kinase, homodimeric domain EML540_01005 PF01739 CheR methyltransferase, SAM binding domain EML540_01005 PF03705 CheR methyltransferase, all-alpha domain EML540_01010 PF00072 Response regulator receiver domain EML540_01010 PF01339 CheB methylesterase EML540_01015 PF00072 Response regulator receiver domain EML540_01020 PF03975 CheD chemotactic sensory transduction EML540_01030 PF08345 Flagellar M-ring protein C-terminal EML540_01030 PF01514 Secretory protein of YscJ/FliF family EML540_01035 PF03472 Autoinducer binding domain EML540_01035 PF00196 Bacterial regulatory proteins, luxR family EML540_01045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_01045 PF00672 HAMP domain EML540_01055 PF01741 Large-conductance mechanosensitive channel, MscL EML540_01060 PF00155 Aminotransferase class I and II EML540_01065 PF01370 NAD dependent epimerase/dehydratase family EML540_01075 PF03884 DNA gyrase inhibitor YacG EML540_01080 PF02545 Maf-like protein EML540_01085 PF01176 Translation initiation factor 1A / IF-1 EML540_01095 PF06793 Uncharacterised protein family (UPF0262) EML540_01100 PF00815 Histidinol dehydrogenase EML540_01110 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EML540_01125 PF00700 Bacterial flagellin C-terminal helical region EML540_01125 PF00669 Bacterial flagellin N-terminal helical region EML540_01130 PF00669 Bacterial flagellin N-terminal helical region EML540_01130 PF00700 Bacterial flagellin C-terminal helical region EML540_01140 PF00700 Bacterial flagellin C-terminal helical region EML540_01140 PF00669 Bacterial flagellin N-terminal helical region EML540_01145 PF00813 FliP family EML540_01155 PF02107 Flagellar L-ring protein EML540_01165 PF02119 Flagellar P-ring protein EML540_01170 PF13144 Chaperone for flagella basal body P-ring formation EML540_01175 PF00460 Flagella basal body rod protein EML540_01175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML540_01180 PF02049 Flagellar hook-basal body complex protein FliE EML540_01185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML540_01190 PF00460 Flagella basal body rod protein EML540_01200 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML540_01200 PF18269 T3SS EscN ATPase C-terminal domain EML540_01205 PF00460 Flagella basal body rod protein EML540_01205 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML540_01215 PF01618 MotA/TolQ/ExbB proton channel family EML540_01220 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EML540_01225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EML540_01230 PF14841 FliG middle domain EML540_01230 PF01706 FliG C-terminal domain EML540_01230 PF14842 FliG N-terminal domain EML540_01235 PF01312 FlhB HrpN YscU SpaS Family EML540_01245 PF00700 Bacterial flagellin C-terminal helical region EML540_01245 PF00669 Bacterial flagellin N-terminal helical region EML540_01255 PF00691 OmpA family EML540_01255 PF13677 Membrane MotB of proton-channel complex MotA/MotB EML540_01265 PF02120 Flagellar hook-length control protein FliK EML540_01275 PF00486 Transcriptional regulatory protein, C terminal EML540_01280 PF00460 Flagella basal body rod protein EML540_01280 PF07559 Flagellar basal body protein FlaE EML540_01280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML540_01300 PF07378 Flagellar protein FlbT EML540_01305 PF03963 Flagellar hook capping protein - N-terminal region EML540_01310 PF01313 Bacterial export proteins, family 3 EML540_01315 PF00771 FHIPEP family EML540_01320 PF01311 Bacterial export proteins, family 1 EML540_01355 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EML540_01355 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EML540_01360 PF00356 Bacterial regulatory proteins, lacI family EML540_01365 PF01547 Bacterial extracellular solute-binding protein EML540_01370 PF00528 Binding-protein-dependent transport system inner membrane component EML540_01375 PF00528 Binding-protein-dependent transport system inner membrane component EML540_01380 PF00128 Alpha amylase, catalytic domain EML540_01385 PF17912 MalK OB fold domain EML540_01385 PF00005 ABC transporter EML540_01385 PF03459 TOBE domain EML540_01400 PF00920 Dehydratase family EML540_01405 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EML540_01410 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EML540_01410 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EML540_01415 PF01266 FAD dependent oxidoreductase EML540_01420 PF00120 Glutamine synthetase, catalytic domain EML540_01440 PF00463 Isocitrate lyase family EML540_01445 PF09856 Predicted transcriptional regulator (DUF2083) EML540_01445 PF06114 IrrE N-terminal-like domain EML540_01445 PF01381 Helix-turn-helix EML540_01450 PF13416 Bacterial extracellular solute-binding protein EML540_01455 PF00005 ABC transporter EML540_01455 PF08402 TOBE domain EML540_01460 PF00528 Binding-protein-dependent transport system inner membrane component EML540_01465 PF00528 Binding-protein-dependent transport system inner membrane component EML540_01475 PF00512 His Kinase A (phospho-acceptor) domain EML540_01475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_01475 PF13188 PAS domain EML540_01475 PF13426 PAS domain EML540_01475 PF00989 PAS fold EML540_01485 PF02541 Ppx/GppA phosphatase family EML540_01490 PF01728 FtsJ-like methyltransferase EML540_01495 PF07690 Major Facilitator Superfamily EML540_01500 PF00753 Metallo-beta-lactamase superfamily EML540_01505 PF00478 IMP dehydrogenase / GMP reductase domain EML540_01505 PF00571 CBS domain EML540_01515 PF08240 Alcohol dehydrogenase GroES-like domain EML540_01515 PF00107 Zinc-binding dehydrogenase EML540_01520 PF01738 Dienelactone hydrolase family EML540_01525 PF00672 HAMP domain EML540_01525 PF00512 His Kinase A (phospho-acceptor) domain EML540_01525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_01530 PF00486 Transcriptional regulatory protein, C terminal EML540_01530 PF00072 Response regulator receiver domain EML540_01540 PF00994 Probable molybdopterin binding domain EML540_01545 PF08544 GHMP kinases C terminal EML540_01545 PF00288 GHMP kinases N terminal domain EML540_01555 PF00348 Polyprenyl synthetase EML540_01570 PF06965 Na+/H+ antiporter 1 EML540_01570 PF01343 Peptidase family S49 EML540_01580 PF02091 Glycyl-tRNA synthetase alpha subunit EML540_01590 PF04011 LemA family EML540_01595 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EML540_01605 PF02092 Glycyl-tRNA synthetase beta subunit EML540_01605 PF05746 DALR anticodon binding domain EML540_01610 PF04463 Protein of unknown function (DUF523) EML540_01615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_01615 PF00672 HAMP domain EML540_01625 PF02844 Phosphoribosylglycinamide synthetase, N domain EML540_01625 PF02843 Phosphoribosylglycinamide synthetase, C domain EML540_01625 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EML540_01630 PF09371 Tex-like protein N-terminal domain EML540_01630 PF17674 HHH domain EML540_01630 PF00575 S1 RNA binding domain EML540_01630 PF16921 Tex protein YqgF-like domain EML540_01645 PF01040 UbiA prenyltransferase family EML540_01660 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_01660 PF03466 LysR substrate binding domain EML540_01670 PF04107 Glutamate-cysteine ligase family 2(GCS2) EML540_01675 PF04452 RNA methyltransferase EML540_01680 PF01384 Phosphate transporter family EML540_01690 PF05116 Sucrose-6F-phosphate phosphohydrolase EML540_01695 PF00534 Glycosyl transferases group 1 EML540_01695 PF13439 Glycosyltransferase Family 4 EML540_01700 PF07729 FCD domain EML540_01700 PF00392 Bacterial regulatory proteins, gntR family EML540_01710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_01710 PF03466 LysR substrate binding domain EML540_01715 PF02913 FAD linked oxidases, C-terminal domain EML540_01715 PF01565 FAD binding domain EML540_01720 PF02913 FAD linked oxidases, C-terminal domain EML540_01720 PF01565 FAD binding domain EML540_01725 PF13183 4Fe-4S dicluster domain EML540_01725 PF02754 Cysteine-rich domain EML540_01735 PF03734 L,D-transpeptidase catalytic domain EML540_01735 PF17969 L,D-transpeptidase C-terminal domain EML540_01740 PF03352 Methyladenine glycosylase EML540_01740 PF00958 GMP synthase C terminal domain EML540_01740 PF13302 Acetyltransferase (GNAT) domain EML540_01740 PF00117 Glutamine amidotransferase class-I EML540_01740 PF13673 Acetyltransferase (GNAT) domain EML540_01750 PF03601 Conserved hypothetical protein 698 EML540_01755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_01755 PF03466 LysR substrate binding domain EML540_01775 PF13393 Histidyl-tRNA synthetase EML540_01775 PF03129 Anticodon binding domain EML540_01785 PF13393 Histidyl-tRNA synthetase EML540_01790 PF01634 ATP phosphoribosyltransferase EML540_01795 PF07681 DoxX EML540_01805 PF00118 TCP-1/cpn60 chaperonin family EML540_01810 PF00166 Chaperonin 10 Kd subunit EML540_01820 PF06574 FAD synthetase EML540_01820 PF01687 Riboflavin kinase EML540_01825 PF00133 tRNA synthetases class I (I, L, M and V) EML540_01825 PF08264 Anticodon-binding domain of tRNA EML540_01835 PF14437 MafB19-like deaminase EML540_01840 PF01479 S4 domain EML540_01840 PF00849 RNA pseudouridylate synthase EML540_01850 PF01734 Patatin-like phospholipase EML540_01855 PF00999 Sodium/hydrogen exchanger family EML540_01855 PF02254 TrkA-N domain EML540_01860 PF01523 Putative modulator of DNA gyrase EML540_01865 PF00459 Inositol monophosphatase family EML540_01885 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EML540_01895 PF08676 MutL C terminal dimerisation domain EML540_01895 PF01119 DNA mismatch repair protein, C-terminal domain EML540_01900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_01900 PF00072 Response regulator receiver domain EML540_01900 PF09456 RcsC Alpha-Beta-Loop (ABL) EML540_01900 PF00512 His Kinase A (phospho-acceptor) domain EML540_01905 PF00990 Diguanylate cyclase, GGDEF domain EML540_01905 PF13188 PAS domain EML540_01905 PF00563 EAL domain EML540_01905 PF03707 Bacterial signalling protein N terminal repeat EML540_01910 PF08450 SMP-30/Gluconolactonase/LRE-like region EML540_01915 PF01081 KDPG and KHG aldolase EML540_01920 PF05035 2-keto-3-deoxy-galactonokinase EML540_01935 PF03472 Autoinducer binding domain EML540_01935 PF00196 Bacterial regulatory proteins, luxR family EML540_01945 PF10609 NUBPL iron-transfer P-loop NTPase EML540_01950 PF01544 CorA-like Mg2+ transporter protein EML540_01955 PF02705 K+ potassium transporter EML540_01965 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter EML540_01970 PF00119 ATP synthase A chain EML540_01975 PF00137 ATP synthase subunit C EML540_01980 PF00430 ATP synthase B/B' CF(0) EML540_01985 PF00430 ATP synthase B/B' CF(0) EML540_01995 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_02000 PF01351 Ribonuclease HII EML540_02015 PF02913 FAD linked oxidases, C-terminal domain EML540_02015 PF01565 FAD binding domain EML540_02020 PF01300 Telomere recombination EML540_02020 PF03481 Putative GTP-binding controlling metal-binding EML540_02030 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EML540_02030 PF00355 Rieske [2Fe-2S] domain EML540_02035 PF00111 2Fe-2S iron-sulfur cluster binding domain EML540_02035 PF00970 Oxidoreductase FAD-binding domain EML540_02035 PF00175 Oxidoreductase NAD-binding domain EML540_02040 PF07886 BA14K-like protein EML540_02045 PF07886 BA14K-like protein EML540_02055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_02055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_02055 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_02055 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML540_02070 PF05958 tRNA (Uracil-5-)-methyltransferase EML540_02075 PF01479 S4 domain EML540_02075 PF01728 FtsJ-like methyltransferase EML540_02080 PF00672 HAMP domain EML540_02080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_02120 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EML540_02120 PF02779 Transketolase, pyrimidine binding domain EML540_02120 PF02780 Transketolase, C-terminal domain EML540_02125 PF02678 Pirin EML540_02125 PF05726 Pirin C-terminal cupin domain EML540_02130 PF02609 Exonuclease VII small subunit EML540_02135 PF00850 Histone deacetylase domain EML540_02140 PF02632 BioY family EML540_02145 PF02361 Cobalt transport protein EML540_02150 PF00005 ABC transporter EML540_02155 PF06224 Winged helix DNA-binding domain EML540_02160 PF00925 GTP cyclohydrolase II EML540_02160 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EML540_02165 PF01264 Chorismate synthase EML540_02180 PF00300 Histidine phosphatase superfamily (branch 1) EML540_02190 PF00226 DnaJ domain EML540_02190 PF01556 DnaJ C terminal domain EML540_02190 PF00684 DnaJ central domain EML540_02200 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EML540_02200 PF01243 Pyridoxamine 5'-phosphate oxidase EML540_02215 PF13419 Haloacid dehalogenase-like hydrolase EML540_02225 PF01523 Putative modulator of DNA gyrase EML540_02235 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EML540_02235 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EML540_02240 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML540_02245 PF01040 UbiA prenyltransferase family EML540_02250 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 EML540_02255 PF00510 Cytochrome c oxidase subunit III EML540_02265 PF02104 SURF1 family EML540_02270 PF02401 LytB protein EML540_02275 PF01636 Phosphotransferase enzyme family EML540_02280 PF00075 RNase H EML540_02295 PF08534 Redoxin EML540_02295 PF00462 Glutaredoxin EML540_02305 PF02622 Uncharacterized ACR, COG1678 EML540_02315 PF15887 Putative zinc-binding metallo-peptidase EML540_02315 PF10005 zinc-ribbon domain EML540_02320 PF00990 Diguanylate cyclase, GGDEF domain EML540_02320 PF13185 GAF domain EML540_02320 PF00563 EAL domain EML540_02325 PF13302 Acetyltransferase (GNAT) domain EML540_02330 PF00675 Insulinase (Peptidase family M16) EML540_02330 PF05193 Peptidase M16 inactive domain EML540_02335 PF14821 Threonine synthase N terminus EML540_02335 PF00291 Pyridoxal-phosphate dependent enzyme EML540_02345 PF13419 Haloacid dehalogenase-like hydrolase EML540_02350 PF07729 FCD domain EML540_02350 PF00392 Bacterial regulatory proteins, gntR family EML540_02365 PF18755 Restriction Enzyme Adenine Methylase Associated EML540_02365 PF01555 DNA methylase EML540_02380 PF00730 HhH-GPD superfamily base excision DNA repair protein EML540_02380 PF14815 NUDIX domain EML540_02390 PF13462 Thioredoxin EML540_02395 PF02463 RecF/RecN/SMC N terminal domain EML540_02400 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_02405 PF02896 PEP-utilising enzyme, TIM barrel domain EML540_02405 PF00391 PEP-utilising enzyme, mobile domain EML540_02405 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EML540_02420 PF00375 Sodium:dicarboxylate symporter family EML540_02450 PF06039 Malate:quinone oxidoreductase (Mqo) EML540_02465 PF00009 Elongation factor Tu GTP binding domain EML540_02470 PF01507 Phosphoadenosine phosphosulfate reductase family EML540_02475 PF01507 Phosphoadenosine phosphosulfate reductase family EML540_02480 PF02082 Transcriptional regulator EML540_02490 PF00528 Binding-protein-dependent transport system inner membrane component EML540_02495 PF00528 Binding-protein-dependent transport system inner membrane component EML540_02500 PF12857 TOBE-like domain EML540_02500 PF00005 ABC transporter EML540_02505 PF08240 Alcohol dehydrogenase GroES-like domain EML540_02505 PF16197 Ketoacyl-synthetase C-terminal extension EML540_02505 PF00698 Acyl transferase domain EML540_02505 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_02505 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_02505 PF00107 Zinc-binding dehydrogenase EML540_02505 PF08659 KR domain EML540_02505 PF00550 Phosphopantetheine attachment site EML540_02505 PF14765 Polyketide synthase dehydratase EML540_02510 PF00990 Diguanylate cyclase, GGDEF domain EML540_02510 PF01590 GAF domain EML540_02510 PF00989 PAS fold EML540_02510 PF00563 EAL domain EML540_02520 PF00440 Bacterial regulatory proteins, tetR family EML540_02520 PF13977 BetI-type transcriptional repressor, C-terminal EML540_02525 PF00171 Aldehyde dehydrogenase family EML540_02530 PF00732 GMC oxidoreductase EML540_02530 PF05199 GMC oxidoreductase EML540_02545 PF00654 Voltage gated chloride channel EML540_02575 PF07690 Major Facilitator Superfamily EML540_02585 PF04679 ATP dependent DNA ligase C terminal region EML540_02585 PF01068 ATP dependent DNA ligase domain EML540_02585 PF04675 DNA ligase N terminus EML540_02595 PF04488 Glycosyltransferase sugar-binding region containing DXD motif EML540_02600 PF00403 Heavy-metal-associated domain EML540_02605 PF17969 L,D-transpeptidase C-terminal domain EML540_02605 PF03734 L,D-transpeptidase catalytic domain EML540_02610 PF03734 L,D-transpeptidase catalytic domain EML540_02610 PF17969 L,D-transpeptidase C-terminal domain EML540_02615 PF01047 MarR family EML540_02620 PF02566 OsmC-like protein EML540_02635 PF00005 ABC transporter EML540_02635 PF12848 ABC transporter EML540_02645 PF01047 MarR family EML540_02665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_02665 PF03466 LysR substrate binding domain EML540_02670 PF00106 short chain dehydrogenase EML540_02685 PF05872 Bacterial protein of unknown function (DUF853) EML540_02695 PF01638 HxlR-like helix-turn-helix EML540_02700 PF00106 short chain dehydrogenase EML540_02705 PF12833 Helix-turn-helix domain EML540_02715 PF00248 Aldo/keto reductase family EML540_02720 PF13280 WYL domain EML540_02720 PF08279 HTH domain EML540_02735 PF01063 Amino-transferase class IV EML540_02740 PF00672 HAMP domain EML540_02740 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_02745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_02745 PF03466 LysR substrate binding domain EML540_02760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML540_02760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML540_02770 PF13280 WYL domain EML540_02770 PF08279 HTH domain EML540_02775 PF01810 LysE type translocator EML540_02780 PF01322 Cytochrome C' EML540_02785 PF00034 Cytochrome c EML540_02815 PF00376 MerR family regulatory protein EML540_02815 PF09278 MerR, DNA binding EML540_02825 PF02583 Metal-sensitive transcriptional repressor EML540_02830 PF01545 Cation efflux family EML540_02840 PF00571 CBS domain EML540_02840 PF00005 ABC transporter EML540_02845 PF00528 Binding-protein-dependent transport system inner membrane component EML540_02860 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EML540_02860 PF00326 Prolyl oligopeptidase family EML540_02870 PF00701 Dihydrodipicolinate synthetase family EML540_02880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML540_02880 PF02805 Metal binding domain of Ada EML540_02880 PF12833 Helix-turn-helix domain EML540_02880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML540_02890 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_02910 PF03006 Haemolysin-III related EML540_02920 PF01641 SelR domain EML540_02925 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML540_02925 PF00361 Proton-conducting membrane transporter EML540_02925 PF13244 Domain of unknown function (DUF4040) EML540_02930 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EML540_02935 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML540_02940 PF00361 Proton-conducting membrane transporter EML540_02945 PF01899 Na+/H+ ion antiporter subunit EML540_02950 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EML540_02955 PF03334 Na+/H+ antiporter subunit EML540_02960 PF05443 ROS/MUCR transcriptional regulator protein EML540_02975 PF02657 Fe-S metabolism associated domain EML540_02980 PF17264 Family of unknown function (DUF5330) EML540_02985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_02985 PF00512 His Kinase A (phospho-acceptor) domain EML540_03020 PF01810 LysE type translocator EML540_03025 PF03466 LysR substrate binding domain EML540_03025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_03030 PF00144 Beta-lactamase EML540_03040 PF00912 Transglycosylase EML540_03040 PF00905 Penicillin binding protein transpeptidase domain EML540_03045 PF03692 Putative zinc- or iron-chelating domain EML540_03050 PF00905 Penicillin binding protein transpeptidase domain EML540_03055 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ EML540_03060 PF04221 RelB antitoxin EML540_03070 PF00403 Heavy-metal-associated domain EML540_03075 PF09278 MerR, DNA binding EML540_03075 PF00376 MerR family regulatory protein EML540_03090 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EML540_03100 PF07690 Major Facilitator Superfamily EML540_03110 PF08244 Glycosyl hydrolases family 32 C terminal EML540_03110 PF00251 Glycosyl hydrolases family 32 N-terminal domain EML540_03115 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EML540_03125 PF01037 Lrp/AsnC ligand binding domain EML540_03125 PF13404 AsnC-type helix-turn-helix domain EML540_03165 PF04860 Phage portal protein EML540_03265 PF00486 Transcriptional regulatory protein, C terminal EML540_03265 PF00072 Response regulator receiver domain EML540_03270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_03285 PF03100 CcmE EML540_03290 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EML540_03290 PF01578 Cytochrome C assembly protein EML540_03295 PF03918 Cytochrome C biogenesis protein EML540_03300 PF13180 PDZ domain EML540_03305 PF00072 Response regulator receiver domain EML540_03305 PF00486 Transcriptional regulatory protein, C terminal EML540_03310 PF00512 His Kinase A (phospho-acceptor) domain EML540_03310 PF00672 HAMP domain EML540_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_03315 PF06629 MltA-interacting protein MipA EML540_03320 PF08335 GlnD PII-uridylyltransferase EML540_03320 PF03710 Glutamate-ammonia ligase adenylyltransferase EML540_03325 PF00989 PAS fold EML540_03325 PF00512 His Kinase A (phospho-acceptor) domain EML540_03325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_03335 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EML540_03335 PF01433 Peptidase family M1 domain EML540_03335 PF11940 Domain of unknown function (DUF3458) Ig-like fold EML540_03340 PF00892 EamA-like transporter family EML540_03355 PF00012 Hsp70 protein EML540_03360 PF03707 Bacterial signalling protein N terminal repeat EML540_03360 PF00563 EAL domain EML540_03360 PF00990 Diguanylate cyclase, GGDEF domain EML540_03380 PF16925 Tetracyclin repressor-like, C-terminal domain EML540_03380 PF00440 Bacterial regulatory proteins, tetR family EML540_03395 PF08240 Alcohol dehydrogenase GroES-like domain EML540_03395 PF00107 Zinc-binding dehydrogenase EML540_03400 PF01638 HxlR-like helix-turn-helix EML540_03405 PF02673 Bacitracin resistance protein BacA EML540_03410 PF00571 CBS domain EML540_03410 PF03448 MgtE intracellular N domain EML540_03410 PF01769 Divalent cation transporter EML540_03415 PF07690 Major Facilitator Superfamily EML540_03420 PF00781 Diacylglycerol kinase catalytic domain EML540_03425 PF00202 Aminotransferase class-III EML540_03440 PF09957 Bacterial antitoxin of type II TA system, VapB EML540_03445 PF01048 Phosphorylase superfamily EML540_03445 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus EML540_03475 PF00155 Aminotransferase class I and II EML540_03485 PF14759 Reductase C-terminal EML540_03485 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_03490 PF03328 HpcH/HpaI aldolase/citrate lyase family EML540_03515 PF02530 Porin subfamily EML540_03520 PF02530 Porin subfamily EML540_03525 PF01464 Transglycosylase SLT domain EML540_03525 PF14718 Soluble lytic murein transglycosylase L domain EML540_03530 PF00701 Dihydrodipicolinate synthetase family EML540_03535 PF01668 SmpB protein EML540_03540 PF00672 HAMP domain EML540_03540 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_03550 PF01192 RNA polymerase Rpb6 EML540_03555 PF02824 TGS domain EML540_03555 PF04607 Region found in RelA / SpoT proteins EML540_03555 PF13291 ACT domain EML540_03570 PF01648 4'-phosphopantetheinyl transferase superfamily EML540_03575 PF10502 Signal peptidase, peptidase S26 EML540_03580 PF00035 Double-stranded RNA binding motif EML540_03580 PF14622 Ribonuclease-III-like EML540_03585 PF01926 50S ribosome-binding GTPase EML540_03585 PF07650 KH domain EML540_03590 PF00027 Cyclic nucleotide-binding domain EML540_03590 PF13545 Crp-like helix-turn-helix domain EML540_03595 PF00072 Response regulator receiver domain EML540_03600 PF02565 Recombination protein O C terminal EML540_03600 PF11967 Recombination protein O N terminal EML540_03605 PF07690 Major Facilitator Superfamily EML540_03610 PF08241 Methyltransferase domain EML540_03620 PF01966 HD domain EML540_03630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_03640 PF00005 ABC transporter EML540_03645 PF00528 Binding-protein-dependent transport system inner membrane component EML540_03650 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EML540_03655 PF00924 Mechanosensitive ion channel EML540_03655 PF05552 Conserved TM helix EML540_03665 PF01966 HD domain EML540_03670 PF01571 Aminomethyltransferase folate-binding domain EML540_03690 PF00293 NUDIX domain EML540_03695 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EML540_03705 PF00990 Diguanylate cyclase, GGDEF domain EML540_03705 PF00072 Response regulator receiver domain EML540_03710 PF01066 CDP-alcohol phosphatidyltransferase EML540_03715 PF02666 Phosphatidylserine decarboxylase EML540_03720 PF00664 ABC transporter transmembrane region EML540_03720 PF00005 ABC transporter EML540_03725 PF01476 LysM domain EML540_03730 PF03641 Possible lysine decarboxylase EML540_03735 PF00905 Penicillin binding protein transpeptidase domain EML540_03735 PF03717 Penicillin-binding Protein dimerisation domain EML540_03740 PF00892 EamA-like transporter family EML540_03745 PF00561 alpha/beta hydrolase fold EML540_03760 PF04480 Protein of unknown function (DUF559) EML540_03765 PF09190 DALR domain EML540_03765 PF01406 tRNA synthetases class I (C) catalytic domain EML540_03770 PF00106 short chain dehydrogenase EML540_03775 PF13537 Glutamine amidotransferase domain EML540_03775 PF00156 Phosphoribosyl transferase domain EML540_03780 PF02674 Colicin V production protein EML540_03785 PF06745 KaiC EML540_03785 PF18073 Rubredoxin metal binding domain EML540_03800 PF00842 Alanine racemase, C-terminal domain EML540_03800 PF01168 Alanine racemase, N-terminal domain EML540_03805 PF12833 Helix-turn-helix domain EML540_03805 PF12852 Cupin EML540_03810 PF03591 AzlC protein EML540_03820 PF00772 DnaB-like helicase N terminal domain EML540_03820 PF03796 DnaB-like helicase C terminal domain EML540_03825 PF01047 MarR family EML540_03835 PF13533 Biotin-lipoyl like EML540_03840 PF03948 Ribosomal protein L9, C-terminal domain EML540_03840 PF01281 Ribosomal protein L9, N-terminal domain EML540_03850 PF01084 Ribosomal protein S18 EML540_03855 PF01250 Ribosomal protein S6 EML540_03860 PF00248 Aldo/keto reductase family EML540_03865 PF00698 Acyl transferase domain EML540_03875 PF00550 Phosphopantetheine attachment site EML540_03880 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_03880 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_03890 PF02618 YceG-like family EML540_03895 PF03755 YicC-like family, N-terminal region EML540_03895 PF08340 Domain of unknown function (DUF1732) EML540_03900 PF00625 Guanylate kinase EML540_03905 PF01738 Dienelactone hydrolase family EML540_03910 PF00398 Ribosomal RNA adenine dimethylase EML540_03915 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EML540_03925 PF03968 OstA-like protein EML540_03925 PF04453 LPS transport system D EML540_03940 PF00883 Cytosol aminopeptidase family, catalytic domain EML540_03940 PF02789 Cytosol aminopeptidase family, N-terminal domain EML540_03950 PF00563 EAL domain EML540_03950 PF00990 Diguanylate cyclase, GGDEF domain EML540_03950 PF03707 Bacterial signalling protein N terminal repeat EML540_03955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_03960 PF00990 Diguanylate cyclase, GGDEF domain EML540_03960 PF00563 EAL domain EML540_03960 PF03707 Bacterial signalling protein N terminal repeat EML540_03965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_03965 PF00989 PAS fold EML540_03965 PF00512 His Kinase A (phospho-acceptor) domain EML540_03970 PF00072 Response regulator receiver domain EML540_03970 PF00196 Bacterial regulatory proteins, luxR family EML540_03980 PF12848 ABC transporter EML540_03980 PF00005 ABC transporter EML540_03985 PF00990 Diguanylate cyclase, GGDEF domain EML540_03985 PF17158 Membrane-associated sensor, integral membrane domain EML540_03990 PF13417 Glutathione S-transferase, N-terminal domain EML540_03995 PF00334 Nucleoside diphosphate kinase EML540_04015 PF02391 MoaE protein EML540_04020 PF02597 ThiS family EML540_04025 PF01066 CDP-alcohol phosphatidyltransferase EML540_04030 PF02151 UvrB/uvrC motif EML540_04030 PF08459 UvrC Helix-hairpin-helix N-terminal EML540_04030 PF01541 GIY-YIG catalytic domain EML540_04040 PF13505 Outer membrane protein beta-barrel domain EML540_04045 PF00043 Glutathione S-transferase, C-terminal domain EML540_04045 PF13417 Glutathione S-transferase, N-terminal domain EML540_04050 PF00445 Ribonuclease T2 family EML540_04060 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EML540_04065 PF01568 Molydopterin dinucleotide binding domain EML540_04065 PF00384 Molybdopterin oxidoreductase EML540_04065 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML540_04070 PF00293 NUDIX domain EML540_04080 PF00551 Formyl transferase EML540_04085 PF00586 AIR synthase related protein, N-terminal domain EML540_04085 PF02769 AIR synthase related protein, C-terminal domain EML540_04090 PF01594 AI-2E family transporter EML540_04100 PF13090 Polyphosphate kinase C-terminal domain 2 EML540_04100 PF17941 Polyphosphate kinase C-terminal domain 1 EML540_04100 PF13089 Polyphosphate kinase N-terminal domain EML540_04100 PF02503 Polyphosphate kinase middle domain EML540_04105 PF02541 Ppx/GppA phosphatase family EML540_04110 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_04130 PF00211 Adenylate and Guanylate cyclase catalytic domain EML540_04140 PF00570 HRDC domain EML540_04140 PF01612 3'-5' exonuclease EML540_04145 PF07690 Major Facilitator Superfamily EML540_04150 PF02938 GAD domain EML540_04150 PF01336 OB-fold nucleic acid binding domain EML540_04150 PF00152 tRNA synthetases class II (D, K and N) EML540_04160 PF06123 Inner membrane protein CreD EML540_04165 PF01740 STAS domain EML540_04165 PF00916 Sulfate permease family EML540_04175 PF03989 DNA gyrase C-terminal domain, beta-propeller EML540_04175 PF00521 DNA gyrase/topoisomerase IV, subunit A EML540_04180 PF04376 Arginine-tRNA-protein transferase, N terminus EML540_04180 PF04377 Arginine-tRNA-protein transferase, C terminus EML540_04190 PF00490 Delta-aminolevulinic acid dehydratase EML540_04210 PF00464 Serine hydroxymethyltransferase EML540_04215 PF03477 ATP cone domain EML540_04220 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EML540_04220 PF01872 RibD C-terminal domain EML540_04225 PF00677 Lumazine binding domain EML540_04230 PF01810 LysE type translocator EML540_04235 PF00885 6,7-dimethyl-8-ribityllumazine synthase EML540_04240 PF01029 NusB family EML540_04245 PF07690 Major Facilitator Superfamily EML540_04250 PF03030 Inorganic H+ pyrophosphatase EML540_04270 PF02504 Fatty acid synthesis protein EML540_04275 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EML540_04275 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EML540_04280 PF00216 Bacterial DNA-binding protein EML540_04285 PF13411 MerR HTH family regulatory protein EML540_04360 PF00403 Heavy-metal-associated domain EML540_04365 PF00175 Oxidoreductase NAD-binding domain EML540_04365 PF00970 Oxidoreductase FAD-binding domain EML540_04365 PF00111 2Fe-2S iron-sulfur cluster binding domain EML540_04370 PF00376 MerR family regulatory protein EML540_04370 PF09278 MerR, DNA binding EML540_04375 PF00528 Binding-protein-dependent transport system inner membrane component EML540_04380 PF00528 Binding-protein-dependent transport system inner membrane component EML540_04380 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_04385 PF00005 ABC transporter EML540_04385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_04390 PF00005 ABC transporter EML540_04390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_04395 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_04405 PF02386 Cation transport protein EML540_04410 PF00585 C-terminal regulatory domain of Threonine dehydratase EML540_04410 PF00291 Pyridoxal-phosphate dependent enzyme EML540_04420 PF00072 Response regulator receiver domain EML540_04420 PF00990 Diguanylate cyclase, GGDEF domain EML540_04425 PF02525 Flavodoxin-like fold EML540_04430 PF03466 LysR substrate binding domain EML540_04430 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_04435 PF02872 5'-nucleotidase, C-terminal domain EML540_04435 PF00149 Calcineurin-like phosphoesterase EML540_04460 PF00581 Rhodanese-like domain EML540_04465 PF01411 tRNA synthetases class II (A) EML540_04465 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML540_04465 PF02272 DHHA1 domain EML540_04470 PF00571 CBS domain EML540_04470 PF00291 Pyridoxal-phosphate dependent enzyme EML540_04475 PF00875 DNA photolyase EML540_04475 PF03441 FAD binding domain of DNA photolyase EML540_04485 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML540_04485 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML540_04515 PF06055 Exopolysaccharide synthesis, ExoD EML540_04565 PF02397 Bacterial sugar transferase EML540_04570 PF13439 Glycosyltransferase Family 4 EML540_04570 PF00534 Glycosyl transferases group 1 EML540_04595 PF02628 Cytochrome oxidase assembly protein EML540_04600 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EML540_04605 PF01118 Semialdehyde dehydrogenase, NAD binding domain EML540_04610 PF00491 Arginase family EML540_04615 PF00380 Ribosomal protein S9/S16 EML540_04620 PF00572 Ribosomal protein L13 EML540_04630 PF13380 CoA binding domain EML540_04635 PF01053 Cys/Met metabolism PLP-dependent enzyme EML540_04660 PF00067 Cytochrome P450 EML540_04665 PF00990 Diguanylate cyclase, GGDEF domain EML540_04670 PF00574 Clp protease EML540_04675 PF07724 AAA domain (Cdc48 subfamily) EML540_04675 PF10431 C-terminal, D2-small domain, of ClpB protein EML540_04675 PF06689 ClpX C4-type zinc finger EML540_04680 PF02190 ATP-dependent protease La (LON) substrate-binding domain EML540_04680 PF05362 Lon protease (S16) C-terminal proteolytic domain EML540_04680 PF00004 ATPase family associated with various cellular activities (AAA) EML540_04685 PF00216 Bacterial DNA-binding protein EML540_04710 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EML540_04715 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EML540_04720 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EML540_04730 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EML540_04745 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EML540_04745 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EML540_04745 PF10531 SLBB domain EML540_04750 PF00384 Molybdopterin oxidoreductase EML540_04750 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EML540_04750 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal EML540_04755 PF00146 NADH dehydrogenase EML540_04760 PF12838 4Fe-4S dicluster domain EML540_04765 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EML540_04770 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML540_04775 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML540_04775 PF00361 Proton-conducting membrane transporter EML540_04780 PF00361 Proton-conducting membrane transporter EML540_04780 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus EML540_04785 PF00361 Proton-conducting membrane transporter EML540_04790 PF03099 Biotin/lipoate A/B protein ligase family EML540_04790 PF08279 HTH domain EML540_04790 PF02237 Biotin protein ligase C terminal domain EML540_04795 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EML540_04795 PF12706 Beta-lactamase superfamily domain EML540_04795 PF17770 Ribonuclease J C-terminal domain EML540_04805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML540_04805 PF03129 Anticodon binding domain EML540_04810 PF12704 MacB-like periplasmic core domain EML540_04810 PF02687 FtsX-like permease family EML540_04815 PF00005 ABC transporter EML540_04820 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML540_04820 PF02811 PHP domain EML540_04820 PF14579 Helix-hairpin-helix motif EML540_04820 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML540_04830 PF00817 impB/mucB/samB family EML540_04830 PF11799 impB/mucB/samB family C-terminal domain EML540_04840 PF00072 Response regulator receiver domain EML540_04845 PF00990 Diguanylate cyclase, GGDEF domain EML540_04845 PF00072 Response regulator receiver domain EML540_04850 PF00471 Ribosomal protein L33 EML540_04855 PF07690 Major Facilitator Superfamily EML540_04870 PF00575 S1 RNA binding domain EML540_04870 PF08206 Ribonuclease B OB domain EML540_04870 PF08461 Ribonuclease R winged-helix domain EML540_04870 PF17876 Cold shock domain EML540_04870 PF00773 RNB domain EML540_04875 PF01131 DNA topoisomerase EML540_04875 PF01751 Toprim domain EML540_04875 PF13368 Topoisomerase C-terminal repeat EML540_04875 PF01396 Topoisomerase DNA binding C4 zinc finger EML540_04885 PF17782 DprA winged helix domain EML540_04885 PF02481 DNA recombination-mediator protein A EML540_04890 PF02660 Glycerol-3-phosphate acyltransferase EML540_04895 PF01979 Amidohydrolase family EML540_04900 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EML540_04900 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EML540_04910 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_04910 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_04910 PF18158 Adaptive response protein AidB N-terminal domain EML540_04915 PF00583 Acetyltransferase (GNAT) family EML540_04945 PF03652 Holliday junction resolvase EML540_04950 PF08274 PhnA Zinc-Ribbon EML540_04950 PF03831 PhnA domain EML540_04960 PF02686 Glu-tRNAGln amidotransferase C subunit EML540_04965 PF01425 Amidase EML540_04970 PF13673 Acetyltransferase (GNAT) domain EML540_04970 PF00583 Acetyltransferase (GNAT) family EML540_04975 PF09857 Putative toxin of bacterial toxin-antitoxin pair EML540_04990 PF02637 GatB domain EML540_04990 PF02934 GatB/GatE catalytic domain EML540_05000 PF00583 Acetyltransferase (GNAT) family EML540_05015 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EML540_05020 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_05020 PF00289 Biotin carboxylase, N-terminal domain EML540_05020 PF02785 Biotin carboxylase C-terminal domain EML540_05025 PF00364 Biotin-requiring enzyme EML540_05030 PF01220 Dehydroquinase class II EML540_05035 PF13462 Thioredoxin EML540_05035 PF06965 Na+/H+ antiporter 1 EML540_05040 PF00155 Aminotransferase class I and II EML540_05065 PF10150 Ribonuclease E/G family EML540_05065 PF00575 S1 RNA binding domain EML540_05065 PF12111 Polyribonucleotide phosphorylase C terminal EML540_05075 PF01520 N-acetylmuramoyl-L-alanine amidase EML540_05080 PF00905 Penicillin binding protein transpeptidase domain EML540_05080 PF17092 Penicillin-binding protein OB-like domain EML540_05080 PF00912 Transglycosylase EML540_05100 PF01513 ATP-NAD kinase EML540_05105 PF02567 Phenazine biosynthesis-like protein EML540_05110 PF00009 Elongation factor Tu GTP binding domain EML540_05110 PF00679 Elongation factor G C-terminus EML540_05110 PF03764 Elongation factor G, domain IV EML540_05125 PF00111 2Fe-2S iron-sulfur cluster binding domain EML540_05135 PF00809 Pterin binding enzyme EML540_05140 PF02152 Dihydroneopterin aldolase EML540_05145 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EML540_05155 PF05128 Domain of unknown function (DUF697) EML540_05160 PF04317 YcjX-like family, DUF463 EML540_05170 PF01258 Prokaryotic dksA/traR C4-type zinc finger EML540_05185 PF00072 Response regulator receiver domain EML540_05185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_05185 PF08448 PAS fold EML540_05185 PF13188 PAS domain EML540_05185 PF00512 His Kinase A (phospho-acceptor) domain EML540_05190 PF02617 ATP-dependent Clp protease adaptor protein ClpS EML540_05195 PF10431 C-terminal, D2-small domain, of ClpB protein EML540_05195 PF00004 ATPase family associated with various cellular activities (AAA) EML540_05195 PF07724 AAA domain (Cdc48 subfamily) EML540_05195 PF02861 Clp amino terminal domain, pathogenicity island component EML540_05195 PF17871 AAA lid domain EML540_05210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_05210 PF03466 LysR substrate binding domain EML540_05220 PF01230 HIT domain EML540_05245 PF00318 Ribosomal protein S2 EML540_05250 PF00889 Elongation factor TS EML540_05255 PF00696 Amino acid kinase family EML540_05260 PF01765 Ribosome recycling factor EML540_05265 PF01255 Putative undecaprenyl diphosphate synthase EML540_05275 PF17820 PDZ domain EML540_05275 PF02163 Peptidase family M50 EML540_05280 PF07244 Surface antigen variable number repeat EML540_05280 PF01103 Surface antigen EML540_05285 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EML540_05285 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_05290 PF07977 FabA-like domain EML540_05295 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_05295 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EML540_05300 PF06230 LpxI C-terminal domain EML540_05300 PF17930 LpxI N-terminal domain EML540_05305 PF02684 Lipid-A-disaccharide synthetase EML540_05310 PF00392 Bacterial regulatory proteins, gntR family EML540_05310 PF07729 FCD domain EML540_05315 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_05320 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05325 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05330 PF00005 ABC transporter EML540_05335 PF00285 Citrate synthase, C-terminal domain EML540_05350 PF00717 Peptidase S24-like EML540_05350 PF01726 LexA DNA binding domain EML540_05355 PF00005 ABC transporter EML540_05360 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05365 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05370 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_05375 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_05375 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_05380 PF08402 TOBE domain EML540_05380 PF00005 ABC transporter EML540_05385 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05390 PF00528 Binding-protein-dependent transport system inner membrane component EML540_05395 PF01547 Bacterial extracellular solute-binding protein EML540_05405 PF13378 Enolase C-terminal domain-like EML540_05405 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_05415 PF00107 Zinc-binding dehydrogenase EML540_05415 PF08240 Alcohol dehydrogenase GroES-like domain EML540_05420 PF04115 Ureidoglycolate lyase EML540_05425 PF00005 ABC transporter EML540_05430 PF00005 ABC transporter EML540_05430 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_05440 PF13458 Periplasmic binding protein EML540_05445 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML540_05445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_05445 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_05445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_05450 PF00106 short chain dehydrogenase EML540_05455 PF00550 Phosphopantetheine attachment site EML540_05455 PF07993 Male sterility protein EML540_05455 PF00501 AMP-binding enzyme EML540_05460 PF00378 Enoyl-CoA hydratase/isomerase EML540_05470 PF07729 FCD domain EML540_05470 PF00392 Bacterial regulatory proteins, gntR family EML540_05475 PF01571 Aminomethyltransferase folate-binding domain EML540_05495 PF00793 DAHP synthetase I family EML540_05500 PF00113 Enolase, C-terminal TIM barrel domain EML540_05500 PF03952 Enolase, N-terminal domain EML540_05510 PF00676 Dehydrogenase E1 component EML540_05515 PF02779 Transketolase, pyrimidine binding domain EML540_05515 PF00364 Biotin-requiring enzyme EML540_05515 PF02780 Transketolase, C-terminal domain EML540_05525 PF00364 Biotin-requiring enzyme EML540_05525 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML540_05525 PF02817 e3 binding domain EML540_05535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML540_05535 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_05545 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EML540_05545 PF04055 Radical SAM superfamily EML540_05550 PF00892 EamA-like transporter family EML540_05570 PF03364 Polyketide cyclase / dehydrase and lipid transport EML540_05575 PF02464 Competence-damaged protein EML540_05580 PF02542 YgbB family EML540_05580 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EML540_05585 PF01207 Dihydrouridine synthase (Dus) EML540_05590 PF00989 PAS fold EML540_05590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_05590 PF00512 His Kinase A (phospho-acceptor) domain EML540_05595 PF02954 Bacterial regulatory protein, Fis family EML540_05595 PF00072 Response regulator receiver domain EML540_05595 PF00158 Sigma-54 interaction domain EML540_05600 PF00672 HAMP domain EML540_05600 PF00989 PAS fold EML540_05600 PF00512 His Kinase A (phospho-acceptor) domain EML540_05600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_05605 PF00072 Response regulator receiver domain EML540_05605 PF02954 Bacterial regulatory protein, Fis family EML540_05605 PF00158 Sigma-54 interaction domain EML540_05610 PF02254 TrkA-N domain EML540_05610 PF02080 TrkA-C domain EML540_05615 PF17209 Hfq protein EML540_05620 PF13167 GTP-binding GTPase N-terminal EML540_05620 PF01926 50S ribosome-binding GTPase EML540_05620 PF16360 GTP-binding GTPase Middle Region EML540_05625 PF03819 MazG nucleotide pyrophosphohydrolase domain EML540_05635 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_05635 PF14824 Sirohaem biosynthesis protein central EML540_05635 PF10414 Sirohaem synthase dimerisation region EML540_05650 PF01795 MraW methylase family EML540_05655 PF00175 Oxidoreductase NAD-binding domain EML540_05655 PF00970 Oxidoreductase FAD-binding domain EML540_05660 PF07690 Major Facilitator Superfamily EML540_05675 PF02347 Glycine cleavage system P-protein EML540_05680 PF01597 Glycine cleavage H-protein EML540_05685 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML540_05685 PF01571 Aminomethyltransferase folate-binding domain EML540_05710 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EML540_05715 PF01479 S4 domain EML540_05715 PF00849 RNA pseudouridylate synthase EML540_05720 PF13419 Haloacid dehalogenase-like hydrolase EML540_05735 PF01042 Endoribonuclease L-PSP EML540_05740 PF00756 Putative esterase EML540_05750 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EML540_05760 PF10417 C-terminal domain of 1-Cys peroxiredoxin EML540_05760 PF00578 AhpC/TSA family EML540_05785 PF04542 Sigma-70 region 2 EML540_05785 PF08281 Sigma-70, region 4 EML540_05800 PF13936 Helix-turn-helix domain EML540_05800 PF00665 Integrase core domain EML540_05805 PF03358 NADPH-dependent FMN reductase EML540_05810 PF03960 ArsC family EML540_05815 PF01758 Sodium Bile acid symporter family EML540_05830 PF00654 Voltage gated chloride channel EML540_05835 PF12706 Beta-lactamase superfamily domain EML540_05835 PF03099 Biotin/lipoate A/B protein ligase family EML540_05840 PF01026 TatD related DNase EML540_05845 PF09334 tRNA synthetases class I (M) EML540_05845 PF08264 Anticodon-binding domain of tRNA EML540_05850 PF09115 DNA polymerase III, delta subunit, C terminal EML540_05855 PF02223 Thymidylate kinase EML540_05860 PF07943 Penicillin-binding protein 5, C-terminal domain EML540_05860 PF00768 D-alanyl-D-alanine carboxypeptidase EML540_05865 PF05036 Sporulation related domain EML540_05865 PF03330 Lytic transglycolase EML540_05910 PF03989 DNA gyrase C-terminal domain, beta-propeller EML540_05910 PF00521 DNA gyrase/topoisomerase IV, subunit A EML540_05915 PF01914 MarC family integral membrane protein EML540_05920 PF00571 CBS domain EML540_05920 PF01743 Poly A polymerase head domain EML540_05930 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EML540_05935 PF00436 Single-strand binding protein family EML540_05940 PF17755 UvrA DNA-binding domain EML540_05940 PF17760 UvrA interaction domain EML540_05950 PF01207 Dihydrouridine synthase (Dus) EML540_05955 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML540_05960 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_05970 PF00950 ABC 3 transport family EML540_05975 PF00005 ABC transporter EML540_05980 PF01297 Zinc-uptake complex component A periplasmic EML540_05985 PF00356 Bacterial regulatory proteins, lacI family EML540_05995 PF00248 Aldo/keto reductase family EML540_06005 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EML540_06005 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_06010 PF03597 Cytochrome oxidase maturation protein cbb3-type EML540_06020 PF05751 FixH EML540_06025 PF13746 4Fe-4S dicluster domain EML540_06025 PF12801 4Fe-4S binding domain EML540_06025 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EML540_06045 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EML540_06045 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EML540_06060 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML540_06065 PF01740 STAS domain EML540_06065 PF00916 Sulfate permease family EML540_06075 PF00924 Mechanosensitive ion channel EML540_06080 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EML540_06095 PF09278 MerR, DNA binding EML540_06095 PF00376 MerR family regulatory protein EML540_06100 PF00571 CBS domain EML540_06100 PF01769 Divalent cation transporter EML540_06100 PF03448 MgtE intracellular N domain EML540_06105 PF00384 Molybdopterin oxidoreductase EML540_06115 PF01327 Polypeptide deformylase EML540_06140 PF03099 Biotin/lipoate A/B protein ligase family EML540_06145 PF08240 Alcohol dehydrogenase GroES-like domain EML540_06145 PF00107 Zinc-binding dehydrogenase EML540_06170 PF02355 Protein export membrane protein EML540_06170 PF07549 SecD/SecF GG Motif EML540_06175 PF02699 Preprotein translocase subunit EML540_06190 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EML540_06190 PF08240 Alcohol dehydrogenase GroES-like domain EML540_06195 PF00440 Bacterial regulatory proteins, tetR family EML540_06200 PF00067 Cytochrome P450 EML540_06210 PF06426 Serine acetyltransferase, N-terminal EML540_06210 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_06215 PF00561 alpha/beta hydrolase fold EML540_06225 PF01494 FAD binding domain EML540_06230 PF01053 Cys/Met metabolism PLP-dependent enzyme EML540_06235 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_06240 PF00528 Binding-protein-dependent transport system inner membrane component EML540_06245 PF00528 Binding-protein-dependent transport system inner membrane component EML540_06250 PF00005 ABC transporter EML540_06265 PF01368 DHH family EML540_06265 PF02272 DHHA1 domain EML540_06265 PF17768 RecJ OB domain EML540_06275 PF03447 Homoserine dehydrogenase, NAD binding domain EML540_06275 PF00742 Homoserine dehydrogenase EML540_06275 PF01842 ACT domain EML540_06280 PF00155 Aminotransferase class I and II EML540_06285 PF01156 Inosine-uridine preferring nucleoside hydrolase EML540_06290 PF01925 Sulfite exporter TauE/SafE EML540_06305 PF00107 Zinc-binding dehydrogenase EML540_06305 PF08240 Alcohol dehydrogenase GroES-like domain EML540_06310 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_06310 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_06320 PF07977 FabA-like domain EML540_06325 PF00550 Phosphopantetheine attachment site EML540_06330 PF04055 Radical SAM superfamily EML540_06335 PF13545 Crp-like helix-turn-helix domain EML540_06335 PF00027 Cyclic nucleotide-binding domain EML540_06345 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EML540_06350 PF03749 Sugar fermentation stimulation protein RE domain EML540_06350 PF17746 SfsA N-terminal OB domain EML540_06355 PF00557 Metallopeptidase family M24 EML540_06360 PF04002 RadC-like JAB domain EML540_06375 PF01474 Class-II DAHP synthetase family EML540_06380 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_06380 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML540_06390 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EML540_06395 PF13419 Haloacid dehalogenase-like hydrolase EML540_06405 PF10415 Fumarase C C-terminus EML540_06405 PF00206 Lyase EML540_06415 PF00117 Glutamine amidotransferase class-I EML540_06415 PF06418 CTP synthase N-terminus EML540_06420 PF03840 Preprotein translocase SecG subunit EML540_06425 PF00121 Triosephosphate isomerase EML540_06435 PF00986 DNA gyrase B subunit, carboxyl terminus EML540_06435 PF01751 Toprim domain EML540_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_06435 PF00204 DNA gyrase B EML540_06440 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_06445 PF16859 Tetracyclin repressor-like, C-terminal domain EML540_06445 PF00440 Bacterial regulatory proteins, tetR family EML540_06450 PF01209 ubiE/COQ5 methyltransferase family EML540_06460 PF00574 Clp protease EML540_06470 PF01022 Bacterial regulatory protein, arsR family EML540_06475 PF13091 PLD-like domain EML540_06480 PF00072 Response regulator receiver domain EML540_06485 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML540_06485 PF01571 Aminomethyltransferase folate-binding domain EML540_06485 PF16350 FAD dependent oxidoreductase central domain EML540_06485 PF01266 FAD dependent oxidoreductase EML540_06490 PF12794 Mechanosensitive ion channel inner membrane domain 1 EML540_06490 PF12795 Mechanosensitive ion channel porin domain EML540_06490 PF00924 Mechanosensitive ion channel EML540_06550 PF00005 ABC transporter EML540_06555 PF02405 Permease MlaE EML540_06560 PF13378 Enolase C-terminal domain-like EML540_06560 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_06575 PF01515 Phosphate acetyl/butaryl transferase EML540_06575 PF00390 Malic enzyme, N-terminal domain EML540_06575 PF03949 Malic enzyme, NAD binding domain EML540_06585 PF00881 Nitroreductase family EML540_06590 PF07676 WD40-like Beta Propeller Repeat EML540_06595 PF02540 NAD synthase EML540_06595 PF00795 Carbon-nitrogen hydrolase EML540_06600 PF00884 Sulfatase EML540_06610 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_06610 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML540_06625 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EML540_06625 PF05698 Bacterial trigger factor protein (TF) C-terminus EML540_06625 PF05697 Bacterial trigger factor protein (TF) EML540_06645 PF01134 Glucose inhibited division protein A EML540_06650 PF00107 Zinc-binding dehydrogenase EML540_06650 PF08240 Alcohol dehydrogenase GroES-like domain EML540_06660 PF00550 Phosphopantetheine attachment site EML540_06665 PF00975 Thioesterase domain EML540_06665 PF00550 Phosphopantetheine attachment site EML540_06665 PF00668 Condensation domain EML540_06665 PF00501 AMP-binding enzyme EML540_06665 PF13193 AMP-binding enzyme C-terminal domain EML540_06670 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML540_06670 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML540_06685 PF04715 Anthranilate synthase component I, N terminal region EML540_06685 PF00425 chorismate binding enzyme EML540_06690 PF01702 Queuine tRNA-ribosyltransferase EML540_06695 PF02547 Queuosine biosynthesis protein EML540_06700 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EML540_06705 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EML540_06710 PF01467 Cytidylyltransferase-like EML540_06725 PF00591 Glycosyl transferase family, a/b domain EML540_06725 PF02885 Glycosyl transferase family, helical bundle domain EML540_06730 PF00218 Indole-3-glycerol phosphate synthase EML540_06735 PF01967 MoaC family EML540_06740 PF03453 MoeA N-terminal region (domain I and II) EML540_06740 PF00994 Probable molybdopterin binding domain EML540_06740 PF03454 MoeA C-terminal region (domain IV) EML540_06745 PF17158 Membrane-associated sensor, integral membrane domain EML540_06745 PF00990 Diguanylate cyclase, GGDEF domain EML540_06755 PF02254 TrkA-N domain EML540_06755 PF00999 Sodium/hydrogen exchanger family EML540_06765 PF06463 Molybdenum Cofactor Synthesis C EML540_06765 PF04055 Radical SAM superfamily EML540_06770 PF00892 EamA-like transporter family EML540_06775 PF07690 Major Facilitator Superfamily EML540_06780 PF12804 MobA-like NTP transferase domain EML540_06785 PF03205 Molybdopterin guanine dinucleotide synthesis protein B EML540_06790 PF01551 Peptidase family M23 EML540_06800 PF01975 Survival protein SurE EML540_06805 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML540_06805 PF02403 Seryl-tRNA synthetase N-terminal domain EML540_06810 PF00902 Sec-independent protein translocase protein (TatC) EML540_06815 PF02416 mttA/Hcf106 family EML540_06820 PF02416 mttA/Hcf106 family EML540_06825 PF04079 Segregation and condensation complex subunit ScpB EML540_06830 PF02616 Segregation and condensation protein ScpA EML540_06835 PF00933 Glycosyl hydrolase family 3 N terminal domain EML540_06845 PF00750 tRNA synthetases class I (R) EML540_06845 PF05746 DALR anticodon binding domain EML540_06845 PF03485 Arginyl tRNA synthetase N terminal domain EML540_06850 PF01966 HD domain EML540_06850 PF13286 Phosphohydrolase-associated domain EML540_06855 PF01521 Iron-sulphur cluster biosynthesis EML540_06865 PF08238 Sel1 repeat EML540_06880 PF10458 Valyl tRNA synthetase tRNA binding arm EML540_06880 PF00133 tRNA synthetases class I (I, L, M and V) EML540_06880 PF08264 Anticodon-binding domain of tRNA EML540_06920 PF03358 NADPH-dependent FMN reductase EML540_06925 PF18146 Damage-inducible protein CinA KH domain EML540_06925 PF00994 Probable molybdopterin binding domain EML540_06925 PF02464 Competence-damaged protein EML540_06930 PF00582 Universal stress protein family EML540_06935 PF00156 Phosphoribosyl transferase domain EML540_06940 PF08471 Class II vitamin B12-dependent ribonucleotide reductase EML540_06940 PF02867 Ribonucleotide reductase, barrel domain EML540_06955 PF01566 Natural resistance-associated macrophage protein EML540_06965 PF00005 ABC transporter EML540_06965 PF00664 ABC transporter transmembrane region EML540_06970 PF01594 AI-2E family transporter EML540_06975 PF00583 Acetyltransferase (GNAT) family EML540_06990 PF01613 Flavin reductase like domain EML540_07005 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML540_07005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML540_07005 PF02824 TGS domain EML540_07005 PF03129 Anticodon binding domain EML540_07015 PF01809 Putative membrane protein insertion efficiency factor EML540_07025 PF01227 GTP cyclohydrolase I EML540_07030 PF01502 Phosphoribosyl-AMP cyclohydrolase EML540_07035 PF01734 Patatin-like phospholipase EML540_07040 PF00478 IMP dehydrogenase / GMP reductase domain EML540_07040 PF00571 CBS domain EML540_07070 PF03313 Serine dehydratase alpha chain EML540_07070 PF03315 Serine dehydratase beta chain EML540_07105 PF03466 LysR substrate binding domain EML540_07105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_07110 PF01965 DJ-1/PfpI family EML540_07110 PF12833 Helix-turn-helix domain EML540_07115 PF03853 YjeF-related protein N-terminus EML540_07115 PF01256 Carbohydrate kinase EML540_07120 PF00543 Nitrogen regulatory protein P-II EML540_07125 PF03951 Glutamine synthetase, beta-Grasp domain EML540_07125 PF00120 Glutamine synthetase, catalytic domain EML540_07135 PF08755 Hemimethylated DNA-binding protein YccV like EML540_07145 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_07155 PF00892 EamA-like transporter family EML540_07165 PF00271 Helicase conserved C-terminal domain EML540_07165 PF00270 DEAD/DEAH box helicase EML540_07165 PF03461 TRCF domain EML540_07165 PF02559 CarD-like/TRCF domain EML540_07165 PF17757 UvrB interaction domain EML540_07175 PF17191 RecG wedge domain EML540_07175 PF00271 Helicase conserved C-terminal domain EML540_07175 PF00270 DEAD/DEAH box helicase EML540_07185 PF05016 ParE toxin of type II toxin-antitoxin system, parDE EML540_07190 PF01402 Ribbon-helix-helix protein, copG family EML540_07205 PF01380 SIS domain EML540_07210 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_07210 PF12804 MobA-like NTP transferase domain EML540_07210 PF14602 Hexapeptide repeat of succinyl-transferase EML540_07215 PF00392 Bacterial regulatory proteins, gntR family EML540_07215 PF07729 FCD domain EML540_07220 PF02608 ABC transporter substrate-binding protein PnrA-like EML540_07225 PF02653 Branched-chain amino acid transport system / permease component EML540_07230 PF02653 Branched-chain amino acid transport system / permease component EML540_07235 PF00005 ABC transporter EML540_07245 PF01494 FAD binding domain EML540_07250 PF03547 Membrane transport protein EML540_07255 PF02683 Cytochrome C biogenesis protein transmembrane region EML540_07285 PF00313 'Cold-shock' DNA-binding domain EML540_07335 PF00561 alpha/beta hydrolase fold EML540_07350 PF00005 ABC transporter EML540_07350 PF12704 MacB-like periplasmic core domain EML540_07350 PF02687 FtsX-like permease family EML540_07355 PF12704 MacB-like periplasmic core domain EML540_07355 PF02687 FtsX-like permease family EML540_07355 PF00005 ABC transporter EML540_07365 PF01521 Iron-sulphur cluster biosynthesis EML540_07370 PF01883 Iron-sulfur cluster assembly protein EML540_07375 PF00266 Aminotransferase class-V EML540_07380 PF01458 Uncharacterized protein family (UPF0051) EML540_07385 PF00005 ABC transporter EML540_07390 PF01458 Uncharacterized protein family (UPF0051) EML540_07395 PF00266 Aminotransferase class-V EML540_07400 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EML540_07405 PF03702 Anhydro-N-acetylmuramic acid kinase EML540_07410 PF00579 tRNA synthetases class I (W and Y) EML540_07420 PF00578 AhpC/TSA family EML540_07425 PF04305 Protein of unknown function (DUF455) EML540_07430 PF08525 Opacity-associated protein A N-terminal motif EML540_07430 PF01476 LysM domain EML540_07430 PF01551 Peptidase family M23 EML540_07435 PF00271 Helicase conserved C-terminal domain EML540_07435 PF00270 DEAD/DEAH box helicase EML540_07455 PF00834 Ribulose-phosphate 3 epimerase family EML540_07465 PF10397 Adenylosuccinate lyase C-terminus EML540_07465 PF00206 Lyase EML540_07475 PF01259 SAICAR synthetase EML540_07480 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EML540_07500 PF00155 Aminotransferase class I and II EML540_07500 PF00392 Bacterial regulatory proteins, gntR family EML540_07510 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EML540_07510 PF00586 AIR synthase related protein, N-terminal domain EML540_07510 PF02769 AIR synthase related protein, C-terminal domain EML540_07530 PF00462 Glutaredoxin EML540_07535 PF07690 Major Facilitator Superfamily EML540_07540 PF00459 Inositol monophosphatase family EML540_07545 PF00459 Inositol monophosphatase family EML540_07550 PF01171 PP-loop family EML540_07555 PF04960 Glutaminase EML540_07560 PF01479 S4 domain EML540_07560 PF00163 Ribosomal protein S4/S9 N-terminal domain EML540_07565 PF03741 Integral membrane protein TerC family EML540_07575 PF00892 EamA-like transporter family EML540_07580 PF01810 LysE type translocator EML540_07590 PF01177 Asp/Glu/Hydantoin racemase EML540_07595 PF00588 SpoU rRNA Methylase family EML540_07605 PF00180 Isocitrate/isopropylmalate dehydrogenase EML540_07620 PF02272 DHHA1 domain EML540_07620 PF01411 tRNA synthetases class II (A) EML540_07620 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML540_07625 PF00154 recA bacterial DNA recombination protein EML540_07630 PF00294 pfkB family carbohydrate kinase EML540_07635 PF04227 Indigoidine synthase A like protein EML540_07640 PF00691 OmpA family EML540_07640 PF01389 OmpA-like transmembrane domain EML540_07645 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_07650 PF00528 Binding-protein-dependent transport system inner membrane component EML540_07655 PF00528 Binding-protein-dependent transport system inner membrane component EML540_07660 PF06233 Usg-like family EML540_07665 PF08241 Methyltransferase domain EML540_07670 PF09084 NMT1/THI5 like EML540_07675 PF13404 AsnC-type helix-turn-helix domain EML540_07675 PF01037 Lrp/AsnC ligand binding domain EML540_07680 PF03167 Uracil DNA glycosylase superfamily EML540_07690 PF00512 His Kinase A (phospho-acceptor) domain EML540_07690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_07690 PF00989 PAS fold EML540_07695 PF01219 Prokaryotic diacylglycerol kinase EML540_07700 PF02277 Phosphoribosyltransferase EML540_07705 PF02654 Cobalamin-5-phosphate synthase EML540_07720 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EML540_07730 PF00005 ABC transporter EML540_07735 PF13407 Periplasmic binding protein domain EML540_07740 PF02653 Branched-chain amino acid transport system / permease component EML540_07745 PF00456 Transketolase, thiamine diphosphate binding domain EML540_07750 PF02780 Transketolase, C-terminal domain EML540_07750 PF02779 Transketolase, pyrimidine binding domain EML540_07755 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML540_07755 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML540_07760 PF04198 Putative sugar-binding domain EML540_07765 PF00106 short chain dehydrogenase EML540_07770 PF01061 ABC-2 type transporter EML540_07775 PF00005 ABC transporter EML540_07790 PF08269 Cache domain EML540_07790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_07800 PF00004 ATPase family associated with various cellular activities (AAA) EML540_07800 PF16193 AAA C-terminal domain EML540_07800 PF12002 MgsA AAA+ ATPase C terminal EML540_07805 PF13180 PDZ domain EML540_07805 PF00595 PDZ domain EML540_07820 PF00920 Dehydratase family EML540_07825 PF00174 Oxidoreductase molybdopterin binding domain EML540_07830 PF01794 Ferric reductase like transmembrane component EML540_07840 PF05675 Protein of unknown function (DUF817) EML540_07845 PF01196 Ribosomal protein L17 EML540_07850 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EML540_07850 PF01000 RNA polymerase Rpb3/RpoA insert domain EML540_07850 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EML540_07855 PF00411 Ribosomal protein S11 EML540_07860 PF00416 Ribosomal protein S13/S18 EML540_07870 PF00344 SecY translocase EML540_07875 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EML540_07880 PF00327 Ribosomal protein L30p/L7e EML540_07885 PF03719 Ribosomal protein S5, C-terminal domain EML540_07885 PF00333 Ribosomal protein S5, N-terminal domain EML540_07890 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EML540_07895 PF00347 Ribosomal protein L6 EML540_07900 PF00410 Ribosomal protein S8 EML540_07905 PF00253 Ribosomal protein S14p/S29e EML540_07910 PF00281 Ribosomal protein L5 EML540_07910 PF00673 ribosomal L5P family C-terminus EML540_07915 PF00467 KOW motif EML540_07915 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EML540_07920 PF00238 Ribosomal protein L14p/L23e EML540_07925 PF00366 Ribosomal protein S17 EML540_07930 PF00831 Ribosomal L29 protein EML540_07935 PF00252 Ribosomal protein L16p/L10e EML540_07940 PF07650 KH domain EML540_07940 PF00189 Ribosomal protein S3, C-terminal domain EML540_07945 PF00237 Ribosomal protein L22p/L17e EML540_07950 PF00203 Ribosomal protein S19 EML540_07955 PF03947 Ribosomal Proteins L2, C-terminal domain EML540_07955 PF00181 Ribosomal Proteins L2, RNA binding domain EML540_07960 PF00276 Ribosomal protein L23 EML540_07965 PF00573 Ribosomal protein L4/L1 family EML540_07970 PF00297 Ribosomal protein L3 EML540_07975 PF00338 Ribosomal protein S10p/S20e EML540_07980 PF03143 Elongation factor Tu C-terminal domain EML540_07980 PF03144 Elongation factor Tu domain 2 EML540_07980 PF00009 Elongation factor Tu GTP binding domain EML540_07985 PF14492 Elongation Factor G, domain II EML540_07985 PF00679 Elongation factor G C-terminus EML540_07985 PF00009 Elongation factor Tu GTP binding domain EML540_07985 PF03144 Elongation factor Tu domain 2 EML540_07985 PF03764 Elongation factor G, domain IV EML540_07990 PF00177 Ribosomal protein S7p/S5e EML540_07995 PF00164 Ribosomal protein S12/S23 EML540_08015 PF04983 RNA polymerase Rpb1, domain 3 EML540_08015 PF04997 RNA polymerase Rpb1, domain 1 EML540_08015 PF05000 RNA polymerase Rpb1, domain 4 EML540_08015 PF00623 RNA polymerase Rpb1, domain 2 EML540_08015 PF04998 RNA polymerase Rpb1, domain 5 EML540_08020 PF10385 RNA polymerase beta subunit external 1 domain EML540_08020 PF04563 RNA polymerase beta subunit EML540_08020 PF04565 RNA polymerase Rpb2, domain 3 EML540_08020 PF00562 RNA polymerase Rpb2, domain 6 EML540_08020 PF04560 RNA polymerase Rpb2, domain 7 EML540_08020 PF04561 RNA polymerase Rpb2, domain 2 EML540_08025 PF16320 Ribosomal protein L7/L12 dimerisation domain EML540_08025 PF00542 Ribosomal protein L7/L12 C-terminal domain EML540_08030 PF00466 Ribosomal protein L10 EML540_08035 PF00687 Ribosomal protein L1p/L10e family EML540_08040 PF03946 Ribosomal protein L11, N-terminal domain EML540_08040 PF00298 Ribosomal protein L11, RNA binding domain EML540_08045 PF02357 Transcription termination factor nusG EML540_08045 PF00467 KOW motif EML540_08050 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EML540_08060 PF02719 Polysaccharide biosynthesis protein EML540_08060 PF08485 Polysaccharide biosynthesis protein C-terminal EML540_08065 PF03143 Elongation factor Tu C-terminal domain EML540_08065 PF03144 Elongation factor Tu domain 2 EML540_08065 PF00009 Elongation factor Tu GTP binding domain EML540_08070 PF03741 Integral membrane protein TerC family EML540_08075 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme EML540_08105 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_08105 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_08130 PF04545 Sigma-70, region 4 EML540_08130 PF04542 Sigma-70 region 2 EML540_08140 PF02954 Bacterial regulatory protein, Fis family EML540_08140 PF00072 Response regulator receiver domain EML540_08140 PF00158 Sigma-54 interaction domain EML540_08145 PF08769 Sporulation initiation factor Spo0A C terminal EML540_08145 PF00072 Response regulator receiver domain EML540_08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_08150 PF00512 His Kinase A (phospho-acceptor) domain EML540_08150 PF01627 Hpt domain EML540_08150 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_08150 PF00072 Response regulator receiver domain EML540_08155 PF00072 Response regulator receiver domain EML540_08160 PF13426 PAS domain EML540_08160 PF08447 PAS fold EML540_08160 PF07536 HWE histidine kinase EML540_08165 PF00072 Response regulator receiver domain EML540_08170 PF08446 PAS fold EML540_08170 PF00360 Phytochrome region EML540_08170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_08170 PF00512 His Kinase A (phospho-acceptor) domain EML540_08170 PF01590 GAF domain EML540_08185 PF08032 RNA 2'-O ribose methyltransferase substrate binding EML540_08185 PF00588 SpoU rRNA Methylase family EML540_08190 PF03061 Thioesterase superfamily EML540_08215 PF13460 NAD(P)H-binding EML540_08220 PF01638 HxlR-like helix-turn-helix EML540_08225 PF12344 Ultra-violet resistance protein B EML540_08225 PF02151 UvrB/uvrC motif EML540_08225 PF00271 Helicase conserved C-terminal domain EML540_08225 PF17757 UvrB interaction domain EML540_08225 PF04851 Type III restriction enzyme, res subunit EML540_08230 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML540_08230 PF00756 Putative esterase EML540_08250 PF00226 DnaJ domain EML540_08250 PF00684 DnaJ central domain EML540_08250 PF01556 DnaJ C terminal domain EML540_08265 PF00990 Diguanylate cyclase, GGDEF domain EML540_08265 PF17151 Periplasmic sensor domain EML540_08275 PF00005 ABC transporter EML540_08275 PF08402 TOBE domain EML540_08285 PF01547 Bacterial extracellular solute-binding protein EML540_08290 PF00155 Aminotransferase class I and II EML540_08295 PF05025 RbsD / FucU transport protein family EML540_08300 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system EML540_08310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EML540_08310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EML540_08320 PF12833 Helix-turn-helix domain EML540_08320 PF06719 AraC-type transcriptional regulator N-terminus EML540_08325 PF00107 Zinc-binding dehydrogenase EML540_08325 PF08240 Alcohol dehydrogenase GroES-like domain EML540_08330 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_08335 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EML540_08340 PF03472 Autoinducer binding domain EML540_08340 PF00196 Bacterial regulatory proteins, luxR family EML540_08345 PF14490 Helix-hairpin-helix containing domain EML540_08345 PF13538 UvrD-like helicase C-terminal domain EML540_08345 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EML540_08365 PF04542 Sigma-70 region 2 EML540_08365 PF08281 Sigma-70, region 4 EML540_08375 PF00248 Aldo/keto reductase family EML540_08390 PF10369 Small subunit of acetolactate synthase EML540_08395 PF00205 Thiamine pyrophosphate enzyme, central domain EML540_08395 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML540_08395 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML540_08415 PF13302 Acetyltransferase (GNAT) domain EML540_08425 PF13180 PDZ domain EML540_08430 PF01145 SPFH domain / Band 7 family EML540_08435 PF01145 SPFH domain / Band 7 family EML540_08440 PF00186 Dihydrofolate reductase EML540_08445 PF00303 Thymidylate synthase EML540_08480 PF02913 FAD linked oxidases, C-terminal domain EML540_08480 PF01565 FAD binding domain EML540_08485 PF00873 AcrB/AcrD/AcrF family EML540_08490 PF13533 Biotin-lipoyl like EML540_08500 PF13361 UvrD-like helicase C-terminal domain EML540_08500 PF00580 UvrD/REP helicase N-terminal domain EML540_08510 PF13977 BetI-type transcriptional repressor, C-terminal EML540_08510 PF00440 Bacterial regulatory proteins, tetR family EML540_08515 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML540_08520 PF00561 alpha/beta hydrolase fold EML540_08540 PF00857 Isochorismatase family EML540_08560 PF01321 Creatinase/Prolidase N-terminal domain EML540_08560 PF00557 Metallopeptidase family M24 EML540_08575 PF02630 SCO1/SenC EML540_08585 PF01584 CheW-like domain EML540_08595 PF00929 Exonuclease EML540_08600 PF03466 LysR substrate binding domain EML540_08600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_08610 PF00583 Acetyltransferase (GNAT) family EML540_08615 PF01636 Phosphotransferase enzyme family EML540_08620 PF03120 NAD-dependent DNA ligase OB-fold domain EML540_08620 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EML540_08620 PF12826 Helix-hairpin-helix motif EML540_08620 PF01653 NAD-dependent DNA ligase adenylation domain EML540_08620 PF00533 BRCA1 C Terminus (BRCT) domain EML540_08625 PF02463 RecF/RecN/SMC N terminal domain EML540_08630 PF13525 Outer membrane lipoprotein EML540_08635 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EML540_08640 PF12327 FtsZ family, C-terminal domain EML540_08640 PF00091 Tubulin/FtsZ family, GTPase domain EML540_08645 PF02491 SHS2 domain inserted in FTSA EML540_08650 PF03799 Cell division protein FtsQ EML540_08650 PF08478 POTRA domain, FtsQ-type EML540_08655 PF07478 D-ala D-ala ligase C-terminus EML540_08655 PF01820 D-ala D-ala ligase N-terminus EML540_08660 PF00083 Sugar (and other) transporter EML540_08660 PF07690 Major Facilitator Superfamily EML540_08665 PF13188 PAS domain EML540_08665 PF03707 Bacterial signalling protein N terminal repeat EML540_08665 PF00990 Diguanylate cyclase, GGDEF domain EML540_08665 PF00563 EAL domain EML540_08670 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EML540_08670 PF01565 FAD binding domain EML540_08675 PF01225 Mur ligase family, catalytic domain EML540_08675 PF08245 Mur ligase middle domain EML540_08675 PF02875 Mur ligase family, glutamate ligase domain EML540_08680 PF04101 Glycosyltransferase family 28 C-terminal domain EML540_08680 PF03033 Glycosyltransferase family 28 N-terminal domain EML540_08685 PF01098 Cell cycle protein EML540_08690 PF08245 Mur ligase middle domain EML540_08690 PF02875 Mur ligase family, glutamate ligase domain EML540_08695 PF00953 Glycosyl transferase family 4 EML540_08695 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EML540_08700 PF08245 Mur ligase middle domain EML540_08700 PF02875 Mur ligase family, glutamate ligase domain EML540_08700 PF01225 Mur ligase family, catalytic domain EML540_08705 PF08245 Mur ligase middle domain EML540_08705 PF01225 Mur ligase family, catalytic domain EML540_08705 PF02875 Mur ligase family, glutamate ligase domain EML540_08710 PF03717 Penicillin-binding Protein dimerisation domain EML540_08710 PF00905 Penicillin binding protein transpeptidase domain EML540_08720 PF01795 MraW methylase family EML540_08725 PF02381 MraZ protein, putative antitoxin-like EML540_08730 PF03994 Domain of Unknown Function (DUF350) EML540_08745 PF13333 Integrase core domain EML540_08745 PF00665 Integrase core domain EML540_08745 PF13276 HTH-like domain EML540_08745 PF01527 Transposase EML540_08775 PF01510 N-acetylmuramoyl-L-alanine amidase EML540_08780 PF00226 DnaJ domain EML540_08780 PF05099 Tellurite resistance protein TerB EML540_08785 PF00365 Phosphofructokinase EML540_08805 PF13649 Methyltransferase domain EML540_08810 PF01183 Glycosyl hydrolases family 25 EML540_08820 PF02219 Methylenetetrahydrofolate reductase EML540_08825 PF01209 ubiE/COQ5 methyltransferase family EML540_08830 PF12848 ABC transporter EML540_08830 PF00005 ABC transporter EML540_08835 PF12146 Serine aminopeptidase, S33 EML540_08840 PF02515 CoA-transferase family III EML540_08845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML540_08845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML540_08845 PF00205 Thiamine pyrophosphate enzyme, central domain EML540_08855 PF01042 Endoribonuclease L-PSP EML540_08870 PF03734 L,D-transpeptidase catalytic domain EML540_08870 PF01476 LysM domain EML540_08875 PF07690 Major Facilitator Superfamily EML540_08885 PF10609 NUBPL iron-transfer P-loop NTPase EML540_08895 PF00465 Iron-containing alcohol dehydrogenase EML540_08900 PF00171 Aldehyde dehydrogenase family EML540_08915 PF03951 Glutamine synthetase, beta-Grasp domain EML540_08915 PF00120 Glutamine synthetase, catalytic domain EML540_08920 PF13520 Amino acid permease EML540_08930 PF01380 SIS domain EML540_08930 PF01418 Helix-turn-helix domain, rpiR family EML540_08950 PF00005 ABC transporter EML540_08950 PF08402 TOBE domain EML540_08955 PF00107 Zinc-binding dehydrogenase EML540_08955 PF08240 Alcohol dehydrogenase GroES-like domain EML540_08970 PF07690 Major Facilitator Superfamily EML540_08975 PF02574 Homocysteine S-methyltransferase EML540_08975 PF00809 Pterin binding enzyme EML540_08975 PF02607 B12 binding domain EML540_08975 PF02310 B12 binding domain EML540_08975 PF02965 Vitamin B12 dependent methionine synthase, activation domain EML540_08995 PF13505 Outer membrane protein beta-barrel domain EML540_09010 PF04402 Protein of unknown function (DUF541) EML540_09020 PF01894 Uncharacterised protein family UPF0047 EML540_09025 PF08446 PAS fold EML540_09025 PF00512 His Kinase A (phospho-acceptor) domain EML540_09025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_09025 PF01590 GAF domain EML540_09025 PF00360 Phytochrome region EML540_09035 PF03979 Sigma-70 factor, region 1.1 EML540_09035 PF04539 Sigma-70 region 3 EML540_09035 PF04542 Sigma-70 region 2 EML540_09035 PF00140 Sigma-70 factor, region 1.2 EML540_09035 PF04545 Sigma-70, region 4 EML540_09035 PF04546 Sigma-70, non-essential region EML540_09040 PF08278 DNA primase DnaG DnaB-binding EML540_09040 PF08275 DNA primase catalytic core, N-terminal domain EML540_09040 PF10410 DnaB-helicase binding domain of primase EML540_09040 PF01807 CHC2 zinc finger EML540_09050 PF00117 Glutamine amidotransferase class-I EML540_09050 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EML540_09060 PF00561 alpha/beta hydrolase fold EML540_09065 PF01554 MatE EML540_09070 PF00672 HAMP domain EML540_09070 PF02743 Cache domain EML540_09070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_09080 PF04228 Putative neutral zinc metallopeptidase EML540_09095 PF02142 MGS-like domain EML540_09095 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EML540_09095 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_09105 PF00990 Diguanylate cyclase, GGDEF domain EML540_09105 PF07694 5TMR of 5TMR-LYT EML540_09120 PF03449 Transcription elongation factor, N-terminal EML540_09120 PF01272 Transcription elongation factor, GreA/GreB, C-term EML540_09125 PF00534 Glycosyl transferases group 1 EML540_09130 PF01037 Lrp/AsnC ligand binding domain EML540_09135 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_09140 PF03466 LysR substrate binding domain EML540_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_09150 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_09165 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_09165 PF03466 LysR substrate binding domain EML540_09175 PF01699 Sodium/calcium exchanger protein EML540_09180 PF00155 Aminotransferase class I and II EML540_09185 PF05231 MASE1 EML540_09185 PF00563 EAL domain EML540_09200 PF00313 'Cold-shock' DNA-binding domain EML540_09205 PF00753 Metallo-beta-lactamase superfamily EML540_09215 PF12802 MarR family EML540_09220 PF00486 Transcriptional regulatory protein, C terminal EML540_09220 PF00072 Response regulator receiver domain EML540_09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_09225 PF16527 Two-component sensor protein CpxA, periplasmic domain EML540_09225 PF00512 His Kinase A (phospho-acceptor) domain EML540_09225 PF00672 HAMP domain EML540_09230 PF01588 Putative tRNA binding domain EML540_09235 PF03807 NADP oxidoreductase coenzyme F420-dependent EML540_09235 PF14748 Pyrroline-5-carboxylate reductase dimerisation EML540_09250 PF01790 Prolipoprotein diacylglyceryl transferase EML540_09260 PF02578 Multi-copper polyphenol oxidoreductase laccase EML540_09275 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EML540_09275 PF14572 Phosphoribosyl synthetase-associated domain EML540_09285 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase EML540_09295 PF00535 Glycosyl transferase family 2 EML540_09300 PF00672 HAMP domain EML540_09300 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_09305 PF00171 Aldehyde dehydrogenase family EML540_09310 PF02954 Bacterial regulatory protein, Fis family EML540_09315 PF00990 Diguanylate cyclase, GGDEF domain EML540_09315 PF00563 EAL domain EML540_09315 PF13188 PAS domain EML540_09315 PF03707 Bacterial signalling protein N terminal repeat EML540_09320 PF01386 Ribosomal L25p family EML540_09320 PF14693 Ribosomal protein TL5, C-terminal domain EML540_09325 PF00990 Diguanylate cyclase, GGDEF domain EML540_09325 PF00563 EAL domain EML540_09325 PF08447 PAS fold EML540_09325 PF08448 PAS fold EML540_09335 PF01195 Peptidyl-tRNA hydrolase EML540_09345 PF02617 ATP-dependent Clp protease adaptor protein ClpS EML540_09350 PF06071 Protein of unknown function (DUF933) EML540_09350 PF01926 50S ribosome-binding GTPase EML540_09365 PF00156 Phosphoribosyl transferase domain EML540_09370 PF00033 Cytochrome b/b6/petB EML540_09370 PF00032 Cytochrome b(C-terminal)/b6/petD EML540_09370 PF02167 Cytochrome C1 family EML540_09375 PF00033 Cytochrome b/b6/petB EML540_09375 PF00032 Cytochrome b(C-terminal)/b6/petD EML540_09380 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EML540_09380 PF00355 Rieske [2Fe-2S] domain EML540_09390 PF00005 ABC transporter EML540_09390 PF00664 ABC transporter transmembrane region EML540_09395 PF00005 ABC transporter EML540_09395 PF00664 ABC transporter transmembrane region EML540_09400 PF00149 Calcineurin-like phosphoesterase EML540_09405 PF00588 SpoU rRNA Methylase family EML540_09410 PF02690 Na+/Pi-cotransporter EML540_09420 PF01218 Coproporphyrinogen III oxidase EML540_09435 PF01743 Poly A polymerase head domain EML540_09435 PF12627 Probable RNA and SrmB- binding site of polymerase A EML540_09435 PF13735 tRNA nucleotidyltransferase domain 2 putative EML540_09440 PF00293 NUDIX domain EML540_09450 PF07726 ATPase family associated with various cellular activities (AAA) EML540_09450 PF17863 AAA lid domain EML540_09470 PF00583 Acetyltransferase (GNAT) family EML540_09475 PF07690 Major Facilitator Superfamily EML540_09485 PF13409 Glutathione S-transferase, N-terminal domain EML540_09490 PF00293 NUDIX domain EML540_09500 PF08502 LeuA allosteric (dimerisation) domain EML540_09500 PF00682 HMGL-like EML540_09505 PF03594 Benzoate membrane transport protein EML540_09520 PF04542 Sigma-70 region 2 EML540_09520 PF08281 Sigma-70, region 4 EML540_09530 PF00574 Clp protease EML540_09535 PF04955 HupE / UreJ protein EML540_09545 PF14489 QueF-like protein EML540_09550 PF01545 Cation efflux family EML540_09550 PF16916 Dimerisation domain of Zinc Transporter EML540_09560 PF13458 Periplasmic binding protein EML540_09570 PF01022 Bacterial regulatory protein, arsR family EML540_09575 PF00005 ABC transporter EML540_09575 PF00571 CBS domain EML540_09580 PF00528 Binding-protein-dependent transport system inner membrane component EML540_09585 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML540_09590 PF00265 Thymidine kinase EML540_09595 PF00127 Copper binding proteins, plastocyanin/azurin family EML540_09605 PF00196 Bacterial regulatory proteins, luxR family EML540_09605 PF03472 Autoinducer binding domain EML540_09610 PF03350 Uncharacterized protein family, UPF0114 EML540_09615 PF04886 PT repeat EML540_09615 PF07715 TonB-dependent Receptor Plug Domain EML540_09615 PF00593 TonB dependent receptor EML540_09625 PF00425 chorismate binding enzyme EML540_09625 PF04715 Anthranilate synthase component I, N terminal region EML540_09625 PF00117 Glutamine amidotransferase class-I EML540_09635 PF11871 Domain of unknown function (DUF3391) EML540_09635 PF01966 HD domain EML540_09640 PF01979 Amidohydrolase family EML540_09640 PF13382 Adenine deaminase C-terminal domain EML540_09650 PF00583 Acetyltransferase (GNAT) family EML540_09655 PF00128 Alpha amylase, catalytic domain EML540_09660 PF00294 pfkB family carbohydrate kinase EML540_09680 PF01926 50S ribosome-binding GTPase EML540_09680 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EML540_09700 PF05992 SbmA/BacA-like family EML540_09710 PF00557 Metallopeptidase family M24 EML540_09725 PF01799 [2Fe-2S] binding domain EML540_09725 PF00111 2Fe-2S iron-sulfur cluster binding domain EML540_09730 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EML540_09730 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EML540_09740 PF03466 LysR substrate binding domain EML540_09740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_09755 PF01979 Amidohydrolase family EML540_09770 PF01070 FMN-dependent dehydrogenase EML540_09775 PF00893 Small Multidrug Resistance protein EML540_09780 PF17932 Tetracyclin repressor-like, C-terminal domain EML540_09780 PF00440 Bacterial regulatory proteins, tetR family EML540_09785 PF07943 Penicillin-binding protein 5, C-terminal domain EML540_09785 PF00768 D-alanyl-D-alanine carboxypeptidase EML540_09795 PF00576 HIUase/Transthyretin family EML540_09800 PF04115 Ureidoglycolate lyase EML540_09815 PF01014 Uricase EML540_09815 PF09349 OHCU decarboxylase EML540_09825 PF06299 Protein of unknown function (DUF1045) EML540_09830 PF01266 FAD dependent oxidoreductase EML540_09835 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EML540_09835 PF01266 FAD dependent oxidoreductase EML540_09840 PF01627 Hpt domain EML540_09840 PF00072 Response regulator receiver domain EML540_09840 PF00512 His Kinase A (phospho-acceptor) domain EML540_09840 PF00672 HAMP domain EML540_09840 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML540_09840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_09845 PF00270 DEAD/DEAH box helicase EML540_09845 PF00271 Helicase conserved C-terminal domain EML540_09850 PF00892 EamA-like transporter family EML540_09855 PF07681 DoxX EML540_09860 PF03734 L,D-transpeptidase catalytic domain EML540_09860 PF01476 LysM domain EML540_09870 PF14403 Circularly permuted ATP-grasp type 2 EML540_09880 PF08379 Bacterial transglutaminase-like N-terminal region EML540_09880 PF01841 Transglutaminase-like superfamily EML540_09895 PF00583 Acetyltransferase (GNAT) family EML540_09910 PF02653 Branched-chain amino acid transport system / permease component EML540_09915 PF00005 ABC transporter EML540_09920 PF13407 Periplasmic binding protein domain EML540_09925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_09925 PF03466 LysR substrate binding domain EML540_09955 PF01757 Acyltransferase family EML540_09965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_09965 PF00672 HAMP domain EML540_09970 PF07690 Major Facilitator Superfamily EML540_09975 PF02607 B12 binding domain EML540_09975 PF02965 Vitamin B12 dependent methionine synthase, activation domain EML540_09975 PF00809 Pterin binding enzyme EML540_09975 PF02574 Homocysteine S-methyltransferase EML540_09975 PF02310 B12 binding domain EML540_09980 PF00528 Binding-protein-dependent transport system inner membrane component EML540_09985 PF00528 Binding-protein-dependent transport system inner membrane component EML540_09990 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_09995 PF00005 ABC transporter EML540_10010 PF00331 Glycosyl hydrolase family 10 EML540_10015 PF00535 Glycosyl transferase family 2 EML540_10030 PF03808 Glycosyl transferase WecB/TagA/CpsF family EML540_10045 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML540_10045 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML540_10045 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML540_10045 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML540_10050 PF01152 Bacterial-like globin EML540_10070 PF00440 Bacterial regulatory proteins, tetR family EML540_10070 PF08362 YcdC-like protein, C-terminal region EML540_10075 PF07687 Peptidase dimerisation domain EML540_10075 PF01546 Peptidase family M20/M25/M40 EML540_10080 PF01979 Amidohydrolase family EML540_10085 PF00293 NUDIX domain EML540_10090 PF00005 ABC transporter EML540_10095 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10100 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10115 PF00873 AcrB/AcrD/AcrF family EML540_10125 PF00753 Metallo-beta-lactamase superfamily EML540_10125 PF12706 Beta-lactamase superfamily domain EML540_10130 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_10135 PF01730 UreF EML540_10140 PF05194 UreE urease accessory protein, C-terminal domain EML540_10140 PF02814 UreE urease accessory protein, N-terminal domain EML540_10145 PF08534 Redoxin EML540_10155 PF01979 Amidohydrolase family EML540_10155 PF00449 Urease alpha-subunit, N-terminal domain EML540_10165 PF07007 Lysozyme inhibitor LprI EML540_10175 PF00699 Urease beta subunit EML540_10180 PF06906 Protein of unknown function (DUF1272) EML540_10185 PF00547 Urease, gamma subunit EML540_10190 PF01774 UreD urease accessory protein EML540_10200 PF00005 ABC transporter EML540_10205 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_10205 PF00005 ABC transporter EML540_10215 PF02653 Branched-chain amino acid transport system / permease component EML540_10225 PF10931 Protein of unknown function (DUF2735) EML540_10230 PF03951 Glutamine synthetase, beta-Grasp domain EML540_10230 PF00120 Glutamine synthetase, catalytic domain EML540_10235 PF00106 short chain dehydrogenase EML540_10240 PF00512 His Kinase A (phospho-acceptor) domain EML540_10240 PF01627 Hpt domain EML540_10240 PF18415 Histidine kinase receptor ArcB trans-membrane domain EML540_10240 PF00072 Response regulator receiver domain EML540_10240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_10240 PF00989 PAS fold EML540_10245 PF00072 Response regulator receiver domain EML540_10255 PF01522 Polysaccharide deacetylase EML540_10260 PF13458 Periplasmic binding protein EML540_10270 PF00005 ABC transporter EML540_10275 PF00005 ABC transporter EML540_10275 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_10280 PF02653 Branched-chain amino acid transport system / permease component EML540_10280 PF11862 Domain of unknown function (DUF3382) EML540_10285 PF02653 Branched-chain amino acid transport system / permease component EML540_10290 PF00459 Inositol monophosphatase family EML540_10320 PF00486 Transcriptional regulatory protein, C terminal EML540_10320 PF00072 Response regulator receiver domain EML540_10340 PF10090 Histidine phosphotransferase C-terminal domain EML540_10355 PF00588 SpoU rRNA Methylase family EML540_10365 PF00849 RNA pseudouridylate synthase EML540_10375 PF04542 Sigma-70 region 2 EML540_10375 PF04545 Sigma-70, region 4 EML540_10375 PF00140 Sigma-70 factor, region 1.2 EML540_10385 PF00709 Adenylosuccinate synthetase EML540_10410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_10420 PF03167 Uracil DNA glycosylase superfamily EML540_10425 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_10430 PF04304 Protein of unknown function (DUF454) EML540_10435 PF00005 ABC transporter EML540_10440 PF01032 FecCD transport family EML540_10445 PF01497 Periplasmic binding protein EML540_10455 PF06228 Haem utilisation ChuX/HutX EML540_10465 PF00551 Formyl transferase EML540_10470 PF00672 HAMP domain EML540_10470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_10470 PF00512 His Kinase A (phospho-acceptor) domain EML540_10475 PF00486 Transcriptional regulatory protein, C terminal EML540_10475 PF00072 Response regulator receiver domain EML540_10485 PF03401 Tripartite tricarboxylate transporter family receptor EML540_10495 PF01970 Tripartite tricarboxylate transporter TctA family EML540_10510 PF01032 FecCD transport family EML540_10515 PF01032 FecCD transport family EML540_10520 PF00005 ABC transporter EML540_10525 PF00210 Ferritin-like domain EML540_10540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_10540 PF03466 LysR substrate binding domain EML540_10545 PF07859 alpha/beta hydrolase fold EML540_10550 PF13533 Biotin-lipoyl like EML540_10555 PF00873 AcrB/AcrD/AcrF family EML540_10570 PF13396 Phospholipase_D-nuclease N-terminal EML540_10570 PF13091 PLD-like domain EML540_10575 PF08543 Phosphomethylpyrimidine kinase EML540_10580 PF00484 Carbonic anhydrase EML540_10590 PF02774 Semialdehyde dehydrogenase, dimerisation domain EML540_10590 PF01118 Semialdehyde dehydrogenase, NAD binding domain EML540_10595 PF00083 Sugar (and other) transporter EML540_10600 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EML540_10600 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EML540_10600 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EML540_10605 PF02233 NAD(P) transhydrogenase beta subunit EML540_10610 PF01613 Flavin reductase like domain EML540_10615 PF00881 Nitroreductase family EML540_10620 PF00561 alpha/beta hydrolase fold EML540_10625 PF01042 Endoribonuclease L-PSP EML540_10630 PF00857 Isochorismatase family EML540_10635 PF00296 Luciferase-like monooxygenase EML540_10640 PF01126 Heme oxygenase EML540_10645 PF00701 Dihydrodipicolinate synthetase family EML540_10650 PF00392 Bacterial regulatory proteins, gntR family EML540_10650 PF07729 FCD domain EML540_10660 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10665 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10670 PF03459 TOBE domain EML540_10670 PF00005 ABC transporter EML540_10670 PF17912 MalK OB fold domain EML540_10675 PF00294 pfkB family carbohydrate kinase EML540_10680 PF03576 Peptidase family S58 EML540_10685 PF01063 Amino-transferase class IV EML540_10690 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_10690 PF03466 LysR substrate binding domain EML540_10700 PF00005 ABC transporter EML540_10700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_10705 PF00005 ABC transporter EML540_10705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_10710 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_10710 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10715 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10720 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_10725 PF01244 Membrane dipeptidase (Peptidase family M19) EML540_10735 PF03706 Lysylphosphatidylglycerol synthase TM region EML540_10735 PF09924 Uncharacterised conserved protein (DUF2156) EML540_10755 PF07690 Major Facilitator Superfamily EML540_10765 PF04444 Catechol dioxygenase N terminus EML540_10765 PF00775 Dioxygenase EML540_10770 PF00465 Iron-containing alcohol dehydrogenase EML540_10780 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML540_10780 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_10785 PF01613 Flavin reductase like domain EML540_10805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_10805 PF00512 His Kinase A (phospho-acceptor) domain EML540_10810 PF00486 Transcriptional regulatory protein, C terminal EML540_10810 PF00072 Response regulator receiver domain EML540_10820 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_10855 PF01259 SAICAR synthetase EML540_10865 PF00529 HlyD membrane-fusion protein of T1SS EML540_10865 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_10870 PF00873 AcrB/AcrD/AcrF family EML540_10875 PF02321 Outer membrane efflux protein EML540_10880 PF08207 Elongation factor P (EF-P) KOW-like domain EML540_10880 PF09285 Elongation factor P, C-terminal EML540_10880 PF01132 Elongation factor P (EF-P) OB domain EML540_10885 PF00152 tRNA synthetases class II (D, K and N) EML540_10890 PF12544 Lysine-2,3-aminomutase EML540_10890 PF04055 Radical SAM superfamily EML540_10905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_10905 PF03466 LysR substrate binding domain EML540_10910 PF01266 FAD dependent oxidoreductase EML540_10920 PF00528 Binding-protein-dependent transport system inner membrane component EML540_10925 PF03459 TOBE domain EML540_10925 PF00005 ABC transporter EML540_10935 PF03576 Peptidase family S58 EML540_10940 PF05690 Thiazole biosynthesis protein ThiG EML540_10950 PF01266 FAD dependent oxidoreductase EML540_10955 PF13667 ThiC-associated domain EML540_10955 PF01964 Radical SAM ThiC family EML540_10960 PF00550 Phosphopantetheine attachment site EML540_10990 PF00664 ABC transporter transmembrane region EML540_10990 PF00005 ABC transporter EML540_10995 PF13545 Crp-like helix-turn-helix domain EML540_10995 PF00027 Cyclic nucleotide-binding domain EML540_11005 PF00672 HAMP domain EML540_11005 PF00211 Adenylate and Guanylate cyclase catalytic domain EML540_11015 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EML540_11015 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EML540_11015 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EML540_11020 PF13439 Glycosyltransferase Family 4 EML540_11020 PF00534 Glycosyl transferases group 1 EML540_11035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_11035 PF00005 ABC transporter EML540_11040 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_11045 PF00528 Binding-protein-dependent transport system inner membrane component EML540_11050 PF00528 Binding-protein-dependent transport system inner membrane component EML540_11050 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_11060 PF00534 Glycosyl transferases group 1 EML540_11060 PF13439 Glycosyltransferase Family 4 EML540_11065 PF03033 Glycosyltransferase family 28 N-terminal domain EML540_11065 PF04101 Glycosyltransferase family 28 C-terminal domain EML540_11070 PF03932 CutC family EML540_11085 PF00728 Glycosyl hydrolase family 20, catalytic domain EML540_11085 PF02838 Glycosyl hydrolase family 20, domain 2 EML540_11095 PF01418 Helix-turn-helix domain, rpiR family EML540_11095 PF01380 SIS domain EML540_11105 PF00005 ABC transporter EML540_11105 PF03459 TOBE domain EML540_11105 PF17912 MalK OB fold domain EML540_11110 PF01547 Bacterial extracellular solute-binding protein EML540_11115 PF00528 Binding-protein-dependent transport system inner membrane component EML540_11120 PF00528 Binding-protein-dependent transport system inner membrane component EML540_11130 PF07702 UTRA domain EML540_11130 PF00392 Bacterial regulatory proteins, gntR family EML540_11135 PF01380 SIS domain EML540_11140 PF01979 Amidohydrolase family EML540_11145 PF00480 ROK family EML540_11150 PF01494 FAD binding domain EML540_11155 PF01569 PAP2 superfamily EML540_11160 PF13288 DXP reductoisomerase C-terminal domain EML540_11160 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EML540_11160 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EML540_11165 PF00155 Aminotransferase class I and II EML540_11175 PF17243 POTRA domain TamA domain 1 EML540_11175 PF07244 Surface antigen variable number repeat EML540_11175 PF01103 Surface antigen EML540_11185 PF01584 CheW-like domain EML540_11190 PF08447 PAS fold EML540_11190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_11190 PF13426 PAS domain EML540_11195 PF02634 FdhD/NarQ family EML540_11200 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EML540_11205 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML540_11205 PF02874 ATP synthase alpha/beta family, beta-barrel domain EML540_11210 PF00231 ATP synthase EML540_11215 PF02874 ATP synthase alpha/beta family, beta-barrel domain EML540_11215 PF00306 ATP synthase alpha/beta chain, C terminal domain EML540_11215 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML540_11220 PF00213 ATP synthase delta (OSCP) subunit EML540_11230 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EML540_11230 PF17764 3′ DNA-binding domain (3′BD) EML540_11230 PF18074 Primosomal protein N C-terminal domain EML540_11230 PF00270 DEAD/DEAH box helicase EML540_11235 PF00589 Phage integrase family EML540_11235 PF02899 Phage integrase, N-terminal SAM-like domain EML540_11255 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_11255 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML540_11260 PF01810 LysE type translocator EML540_11270 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML540_11270 PF00364 Biotin-requiring enzyme EML540_11270 PF02817 e3 binding domain EML540_11275 PF16078 2-oxoglutarate dehydrogenase N-terminus EML540_11275 PF02779 Transketolase, pyrimidine binding domain EML540_11275 PF00676 Dehydrogenase E1 component EML540_11275 PF16870 2-oxoglutarate dehydrogenase C-terminal EML540_11280 PF02629 CoA binding domain EML540_11280 PF00549 CoA-ligase EML540_11285 PF08442 ATP-grasp domain EML540_11285 PF00549 CoA-ligase EML540_11290 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EML540_11290 PF00056 lactate/malate dehydrogenase, NAD binding domain EML540_11295 PF03969 AFG1-like ATPase EML540_11300 PF02974 Protease inhibitor Inh EML540_11305 PF13085 2Fe-2S iron-sulfur cluster binding domain EML540_11305 PF13237 4Fe-4S dicluster domain EML540_11310 PF02910 Fumarate reductase flavoprotein C-term EML540_11310 PF00890 FAD binding domain EML540_11320 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EML540_11345 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EML540_11345 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EML540_11350 PF00814 Glycoprotease family EML540_11355 PF03900 Porphobilinogen deaminase, C-terminal domain EML540_11355 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EML540_11380 PF00117 Glutamine amidotransferase class-I EML540_11390 PF02325 YGGT family EML540_11395 PF02594 Uncharacterised ACR, YggU family COG1872 EML540_11400 PF00719 Inorganic pyrophosphatase EML540_11410 PF00679 Elongation factor G C-terminus EML540_11410 PF00009 Elongation factor Tu GTP binding domain EML540_11410 PF03144 Elongation factor Tu domain 2 EML540_11415 PF01432 Peptidase family M3 EML540_11420 PF01047 MarR family EML540_11425 PF07690 Major Facilitator Superfamily EML540_11430 PF00764 Arginosuccinate synthase EML540_11435 PF00106 short chain dehydrogenase EML540_11440 PF01810 LysE type translocator EML540_11445 PF00005 ABC transporter EML540_11450 PF02653 Branched-chain amino acid transport system / permease component EML540_11460 PF04055 Radical SAM superfamily EML540_11475 PF01329 Pterin 4 alpha carbinolamine dehydratase EML540_11480 PF01451 Low molecular weight phosphotyrosine protein phosphatase EML540_11485 PF02834 LigT like Phosphoesterase EML540_11490 PF13472 GDSL-like Lipase/Acylhydrolase family EML540_11495 PF00005 ABC transporter EML540_11505 PF01027 Inhibitor of apoptosis-promoting Bax1 EML540_11520 PF00694 Aconitase C-terminal domain EML540_11520 PF00330 Aconitase family (aconitate hydratase) EML540_11525 PF00005 ABC transporter EML540_11530 PF03379 CcmB protein EML540_11535 PF01578 Cytochrome C assembly protein EML540_11545 PF08534 Redoxin EML540_11550 PF00990 Diguanylate cyclase, GGDEF domain EML540_11555 PF10755 Protein of unknown function (DUF2585) EML540_11560 PF04279 Intracellular septation protein A EML540_11565 PF02881 SRP54-type protein, helical bundle domain EML540_11565 PF00448 SRP54-type protein, GTPase domain EML540_11570 PF04055 Radical SAM superfamily EML540_11570 PF00919 Uncharacterized protein family UPF0004 EML540_11575 PF01678 Diaminopimelate epimerase EML540_11580 PF12706 Beta-lactamase superfamily domain EML540_11585 PF02881 SRP54-type protein, helical bundle domain EML540_11585 PF02978 Signal peptide binding domain EML540_11585 PF00448 SRP54-type protein, GTPase domain EML540_11590 PF02153 Prephenate dehydrogenase EML540_11590 PF01817 Chorismate mutase type II EML540_11595 PF00886 Ribosomal protein S16 EML540_11600 PF05239 PRC-barrel domain EML540_11600 PF01782 RimM N-terminal domain EML540_11605 PF01746 tRNA (Guanine-1)-methyltransferase EML540_11615 PF01245 Ribosomal protein L19 EML540_11620 PF00005 ABC transporter EML540_11620 PF00664 ABC transporter transmembrane region EML540_11625 PF00529 HlyD membrane-fusion protein of T1SS EML540_11625 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_11635 PF07690 Major Facilitator Superfamily EML540_11640 PF00330 Aconitase family (aconitate hydratase) EML540_11645 PF01435 Peptidase family M48 EML540_11650 PF00005 ABC transporter EML540_11655 PF00528 Binding-protein-dependent transport system inner membrane component EML540_11660 PF01547 Bacterial extracellular solute-binding protein EML540_11670 PF16326 ABC transporter C-terminal domain EML540_11670 PF00005 ABC transporter EML540_11680 PF04204 Homoserine O-succinyltransferase EML540_11685 PF01263 Aldose 1-epimerase EML540_11690 PF00912 Transglycosylase EML540_11695 PF00348 Polyprenyl synthetase EML540_11700 PF00691 OmpA family EML540_11700 PF13488 Glycine zipper EML540_11705 PF04551 GcpE protein EML540_11710 PF07690 Major Facilitator Superfamily EML540_11715 PF08220 DeoR-like helix-turn-helix domain EML540_11715 PF00455 DeoR C terminal sensor domain EML540_11720 PF00364 Biotin-requiring enzyme EML540_11720 PF00682 HMGL-like EML540_11720 PF00289 Biotin carboxylase, N-terminal domain EML540_11720 PF02785 Biotin carboxylase C-terminal domain EML540_11720 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_11720 PF02436 Conserved carboxylase domain EML540_11725 PF00072 Response regulator receiver domain EML540_11725 PF00196 Bacterial regulatory proteins, luxR family EML540_11730 PF00005 ABC transporter EML540_11730 PF00664 ABC transporter transmembrane region EML540_11740 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EML540_11740 PF06165 Glycosyltransferase family 36 EML540_11740 PF10091 Putative glucoamylase EML540_11745 PF01546 Peptidase family M20/M25/M40 EML540_11745 PF07687 Peptidase dimerisation domain EML540_11750 PF01266 FAD dependent oxidoreductase EML540_11755 PF00291 Pyridoxal-phosphate dependent enzyme EML540_11760 PF00920 Dehydratase family EML540_11765 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_11765 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML540_11770 PF01370 NAD dependent epimerase/dehydratase family EML540_11775 PF01565 FAD binding domain EML540_11775 PF02913 FAD linked oxidases, C-terminal domain EML540_11780 PF00392 Bacterial regulatory proteins, gntR family EML540_11780 PF07729 FCD domain EML540_11790 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML540_11795 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_11800 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_11805 PF00501 AMP-binding enzyme EML540_11805 PF16177 Acetyl-coenzyme A synthetase N-terminus EML540_11805 PF13193 AMP-binding enzyme C-terminal domain EML540_11815 PF01168 Alanine racemase, N-terminal domain EML540_11820 PF13603 Leucyl-tRNA synthetase, Domain 2 EML540_11820 PF00133 tRNA synthetases class I (I, L, M and V) EML540_11820 PF08264 Anticodon-binding domain of tRNA EML540_11835 PF00037 4Fe-4S binding domain EML540_11835 PF11953 Domain of unknown function (DUF3470) EML540_11850 PF01494 FAD binding domain EML540_11860 PF00543 Nitrogen regulatory protein P-II EML540_11865 PF00909 Ammonium Transporter Family EML540_11870 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EML540_11870 PF17854 FtsK alpha domain EML540_11870 PF01580 FtsK/SpoIIIE family EML540_11870 PF09397 Ftsk gamma domain EML540_11875 PF03548 Outer membrane lipoprotein carrier protein LolA EML540_11890 PF00486 Transcriptional regulatory protein, C terminal EML540_11890 PF00072 Response regulator receiver domain EML540_11900 PF02559 CarD-like/TRCF domain EML540_11905 PF05088 Bacterial NAD-glutamate dehydrogenase EML540_11910 PF11700 Vacuole effluxer Atg22 like EML540_11915 PF05233 PHB accumulation regulatory domain EML540_11915 PF07879 PHB/PHA accumulation regulator DNA-binding domain EML540_11920 PF00108 Thiolase, N-terminal domain EML540_11920 PF02803 Thiolase, C-terminal domain EML540_11935 PF00210 Ferritin-like domain EML540_11940 PF00293 NUDIX domain EML540_11950 PF13180 PDZ domain EML540_11950 PF03572 Peptidase family S41 EML540_11960 PF02590 Predicted SPOUT methyltransferase EML540_11970 PF01467 Cytidylyltransferase-like EML540_11975 PF00171 Aldehyde dehydrogenase family EML540_11980 PF00696 Amino acid kinase family EML540_11980 PF01472 PUA domain EML540_11985 PF01018 GTP1/OBG EML540_11985 PF01926 50S ribosome-binding GTPase EML540_11990 PF13302 Acetyltransferase (GNAT) domain EML540_12000 PF01016 Ribosomal L27 protein EML540_12005 PF00829 Ribosomal prokaryotic L21 protein EML540_12020 PF03328 HpcH/HpaI aldolase/citrate lyase family EML540_12030 PF00694 Aconitase C-terminal domain EML540_12035 PF00180 Isocitrate/isopropylmalate dehydrogenase EML540_12040 PF03150 Di-haem cytochrome c peroxidase EML540_12045 PF07685 CobB/CobQ-like glutamine amidotransferase domain EML540_12045 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_12050 PF14824 Sirohaem biosynthesis protein central EML540_12050 PF10414 Sirohaem synthase dimerisation region EML540_12050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_12055 PF01888 CbiD EML540_12060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_12070 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_12075 PF02571 Precorrin-6x reductase CbiJ/CobK EML540_12080 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_12085 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_12090 PF02570 Precorrin-8X methylmutase EML540_12095 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EML540_12100 PF02514 CobN/Magnesium Chelatase EML540_12105 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML540_12105 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_12115 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EML540_12120 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_12120 PF07685 CobB/CobQ-like glutamine amidotransferase domain EML540_12125 PF03186 CobD/Cbib protein EML540_12130 PF00155 Aminotransferase class I and II EML540_12135 PF13378 Enolase C-terminal domain-like EML540_12135 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_12140 PF05336 L-rhamnose mutarotase EML540_12145 PF01232 Mannitol dehydrogenase Rossmann domain EML540_12145 PF08125 Mannitol dehydrogenase C-terminal domain EML540_12150 PF08240 Alcohol dehydrogenase GroES-like domain EML540_12150 PF00107 Zinc-binding dehydrogenase EML540_12160 PF00248 Aldo/keto reductase family EML540_12170 PF02653 Branched-chain amino acid transport system / permease component EML540_12175 PF00005 ABC transporter EML540_12180 PF07729 FCD domain EML540_12180 PF00392 Bacterial regulatory proteins, gntR family EML540_12185 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EML540_12185 PF08666 SAF domain EML540_12190 PF01808 AICARFT/IMPCHase bienzyme EML540_12190 PF02142 MGS-like domain EML540_12200 PF01029 NusB family EML540_12200 PF01189 16S rRNA methyltransferase RsmB/F EML540_12205 PF01435 Peptidase family M48 EML540_12215 PF17762 HTH domain found in ParB protein EML540_12215 PF02195 ParB-like nuclease domain EML540_12220 PF13614 AAA domain EML540_12225 PF02527 rRNA small subunit methyltransferase G EML540_12230 PF01134 Glucose inhibited division protein A EML540_12230 PF13932 GidA associated domain EML540_12235 PF01926 50S ribosome-binding GTPase EML540_12235 PF12631 MnmE helical domain EML540_12235 PF10396 GTP-binding protein TrmE N-terminus EML540_12240 PF07498 Rho termination factor, N-terminal domain EML540_12240 PF07497 Rho termination factor, RNA-binding domain EML540_12240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML540_12245 PF03653 Uncharacterised protein family (UPF0093) EML540_12250 PF01208 Uroporphyrinogen decarboxylase (URO-D) EML540_12255 PF03618 Kinase/pyrophosphorylase EML540_12260 PF02545 Maf-like protein EML540_12265 PF08501 Shikimate dehydrogenase substrate binding domain EML540_12265 PF01488 Shikimate / quinate 5-dehydrogenase EML540_12265 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML540_12270 PF01121 Dephospho-CoA kinase EML540_12275 PF00929 Exonuclease EML540_12280 PF02556 Preprotein translocase subunit SecB EML540_12285 PF04186 FxsA cytoplasmic membrane protein EML540_12295 PF06725 3D domain EML540_12295 PF03562 MltA specific insert domain EML540_12310 PF00986 DNA gyrase B subunit, carboxyl terminus EML540_12310 PF00204 DNA gyrase B EML540_12310 PF01751 Toprim domain EML540_12310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_12320 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML540_12335 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EML540_12340 PF00291 Pyridoxal-phosphate dependent enzyme EML540_12345 PF00290 Tryptophan synthase alpha chain EML540_12350 PF01039 Carboxyl transferase domain EML540_12355 PF08245 Mur ligase middle domain EML540_12355 PF02875 Mur ligase family, glutamate ligase domain EML540_12360 PF00085 Thioredoxin EML540_12365 PF13361 UvrD-like helicase C-terminal domain EML540_12365 PF00580 UvrD/REP helicase N-terminal domain EML540_12365 PF12705 PD-(D/E)XK nuclease superfamily EML540_12375 PF12804 MobA-like NTP transferase domain EML540_12380 PF01636 Phosphotransferase enzyme family EML540_12385 PF00512 His Kinase A (phospho-acceptor) domain EML540_12385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_12390 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EML540_12390 PF05221 S-adenosyl-L-homocysteine hydrolase EML540_12395 PF00381 PTS HPr component phosphorylation site EML540_12400 PF03830 PTS system sorbose subfamily IIB component EML540_12400 PF03610 PTS system fructose IIA component EML540_12405 PF02603 HPr Serine kinase N terminus EML540_12405 PF07475 HPr Serine kinase C-terminal domain EML540_12410 PF13756 Stimulus-sensing domain EML540_12410 PF13755 Sensor N-terminal transmembrane domain EML540_12410 PF00512 His Kinase A (phospho-acceptor) domain EML540_12410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_12410 PF00672 HAMP domain EML540_12415 PF00486 Transcriptional regulatory protein, C terminal EML540_12415 PF00072 Response regulator receiver domain EML540_12420 PF01293 Phosphoenolpyruvate carboxykinase EML540_12425 PF00472 RF-1 domain EML540_12430 PF00485 Phosphoribulokinase / Uridine kinase family EML540_12435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EML540_12440 PF00977 Histidine biosynthesis protein EML540_12445 PF00977 Histidine biosynthesis protein EML540_12450 PF00117 Glutamine amidotransferase class-I EML540_12460 PF00475 Imidazoleglycerol-phosphate dehydratase EML540_12465 PF00227 Proteasome subunit EML540_12470 PF00004 ATPase family associated with various cellular activities (AAA) EML540_12470 PF07724 AAA domain (Cdc48 subfamily) EML540_12470 PF10431 C-terminal, D2-small domain, of ClpB protein EML540_12480 PF01274 Malate synthase EML540_12495 PF00072 Response regulator receiver domain EML540_12500 PF00512 His Kinase A (phospho-acceptor) domain EML540_12500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_12505 PF08482 ATP-dependent helicase C-terminal EML540_12505 PF00270 DEAD/DEAH box helicase EML540_12505 PF04408 Helicase associated domain (HA2) EML540_12505 PF00271 Helicase conserved C-terminal domain EML540_12540 PF00271 Helicase conserved C-terminal domain EML540_12540 PF09382 RQC domain EML540_12540 PF16124 RecQ zinc-binding EML540_12540 PF00570 HRDC domain EML540_12540 PF00270 DEAD/DEAH box helicase EML540_12550 PF13407 Periplasmic binding protein domain EML540_12555 PF02653 Branched-chain amino acid transport system / permease component EML540_12560 PF00005 ABC transporter EML540_12565 PF00485 Phosphoribulokinase / Uridine kinase family EML540_12570 PF00462 Glutaredoxin EML540_12575 PF07972 NrdI Flavodoxin like EML540_12580 PF02867 Ribonucleotide reductase, barrel domain EML540_12580 PF08343 Ribonucleotide reductase N-terminal EML540_12580 PF00317 Ribonucleotide reductase, all-alpha domain EML540_12585 PF00268 Ribonucleotide reductase, small chain EML540_12595 PF02463 RecF/RecN/SMC N terminal domain EML540_12600 PF00581 Rhodanese-like domain EML540_12600 PF00899 ThiF family EML540_12615 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_12615 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_12625 PF00294 pfkB family carbohydrate kinase EML540_12635 PF08468 Methyltransferase small domain N-terminal EML540_12635 PF05175 Methyltransferase small domain EML540_12640 PF03725 3' exoribonuclease family, domain 2 EML540_12640 PF00575 S1 RNA binding domain EML540_12640 PF01138 3' exoribonuclease family, domain 1 EML540_12640 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EML540_12640 PF00013 KH domain EML540_12645 PF00312 Ribosomal protein S15 EML540_12650 PF16198 tRNA pseudouridylate synthase B C-terminal domain EML540_12650 PF01509 TruB family pseudouridylate synthase (N terminal domain) EML540_12650 PF09157 Pseudouridine synthase II TruB, C-terminal EML540_12655 PF02033 Ribosome-binding factor A EML540_12660 PF03144 Elongation factor Tu domain 2 EML540_12660 PF11987 Translation-initiation factor 2 EML540_12660 PF08364 Bacterial translation initiation factor IF-2 associated region EML540_12660 PF00009 Elongation factor Tu GTP binding domain EML540_12660 PF04760 Translation initiation factor IF-2, N-terminal region EML540_12670 PF00575 S1 RNA binding domain EML540_12670 PF08529 NusA N-terminal domain EML540_12670 PF13184 NusA-like KH domain EML540_12675 PF17384 RimP C-terminal SH3 domain EML540_12675 PF02576 RimP N-terminal domain EML540_12680 PF05977 Transmembrane secretion effector EML540_12685 PF13406 Transglycosylase SLT domain EML540_12690 PF02132 RecR protein EML540_12690 PF13662 Toprim domain EML540_12700 PF02575 YbaB/EbfC DNA-binding family EML540_12705 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EML540_12705 PF12169 DNA polymerase III subunits gamma and tau domain III EML540_12705 PF12170 DNA polymerase III tau subunit V interacting with alpha EML540_12720 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain EML540_12720 PF09297 NADH pyrophosphatase zinc ribbon domain EML540_12720 PF00293 NUDIX domain EML540_12725 PF00800 Prephenate dehydratase EML540_12725 PF01817 Chorismate mutase type II EML540_12730 PF02348 Cytidylyltransferase EML540_12735 PF00034 Cytochrome c EML540_12740 PF02397 Bacterial sugar transferase EML540_12745 PF00912 Transglycosylase EML540_12745 PF00905 Penicillin binding protein transpeptidase domain EML540_12750 PF04073 Aminoacyl-tRNA editing domain EML540_12755 PF00313 'Cold-shock' DNA-binding domain EML540_12760 PF01546 Peptidase family M20/M25/M40 EML540_12760 PF07687 Peptidase dimerisation domain EML540_12765 PF01047 MarR family EML540_12775 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EML540_12775 PF00476 DNA polymerase family A EML540_12775 PF01367 5'-3' exonuclease, C-terminal SAM fold EML540_12775 PF01612 3'-5' exonuclease EML540_12785 PF01783 Ribosomal L32p protein family EML540_12790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_12790 PF02743 Cache domain EML540_12790 PF00512 His Kinase A (phospho-acceptor) domain EML540_12795 PF00158 Sigma-54 interaction domain EML540_12795 PF00072 Response regulator receiver domain EML540_12795 PF02954 Bacterial regulatory protein, Fis family EML540_12800 PF03401 Tripartite tricarboxylate transporter family receptor EML540_12805 PF07331 Tripartite tricarboxylate transporter TctB family EML540_12810 PF01970 Tripartite tricarboxylate transporter TctA family EML540_12815 PF04102 SlyX EML540_12825 PF00226 DnaJ domain EML540_12825 PF01556 DnaJ C terminal domain EML540_12825 PF00684 DnaJ central domain EML540_12830 PF00012 Hsp70 protein EML540_12845 PF01625 Peptide methionine sulfoxide reductase EML540_12850 PF02608 ABC transporter substrate-binding protein PnrA-like EML540_12855 PF00005 ABC transporter EML540_12860 PF02653 Branched-chain amino acid transport system / permease component EML540_12865 PF02653 Branched-chain amino acid transport system / permease component EML540_12870 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EML540_12875 PF01048 Phosphorylase superfamily EML540_12880 PF01791 DeoC/LacD family aldolase EML540_12885 PF00591 Glycosyl transferase family, a/b domain EML540_12885 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EML540_12885 PF02885 Glycosyl transferase family, helical bundle domain EML540_12900 PF00962 Adenosine/AMP deaminase EML540_12905 PF01676 Metalloenzyme superfamily EML540_12915 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EML540_12920 PF00510 Cytochrome c oxidase subunit III EML540_12925 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML540_12930 PF06481 COX Aromatic Rich Motif EML540_12930 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EML540_12935 PF07690 Major Facilitator Superfamily EML540_12935 PF00083 Sugar (and other) transporter EML540_12940 PF01493 GXGXG motif EML540_12940 PF01645 Conserved region in glutamate synthase EML540_12940 PF04898 Glutamate synthase central domain EML540_12940 PF00310 Glutamine amidotransferases class-II EML540_12945 PF00175 Oxidoreductase NAD-binding domain EML540_12945 PF00258 Flavodoxin EML540_12945 PF00667 FAD binding domain EML540_12965 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_12965 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_12970 PF07977 FabA-like domain EML540_12980 PF03458 UPF0126 domain EML540_12990 PF06912 Protein of unknown function (DUF1275) EML540_13000 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13005 PF00005 ABC transporter EML540_13010 PF00392 Bacterial regulatory proteins, gntR family EML540_13010 PF07702 UTRA domain EML540_13015 PF01618 MotA/TolQ/ExbB proton channel family EML540_13020 PF02472 Biopolymer transport protein ExbD/TolR EML540_13030 PF02615 Malate/L-lactate dehydrogenase EML540_13045 PF00625 Guanylate kinase EML540_13050 PF07969 Amidohydrolase family EML540_13055 PF06299 Protein of unknown function (DUF1045) EML540_13060 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13065 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13075 PF00005 ABC transporter EML540_13085 PF00005 ABC transporter EML540_13090 PF00005 ABC transporter EML540_13095 PF06007 Phosphonate metabolism protein PhnJ EML540_13100 PF05861 Bacterial phosphonate metabolism protein (PhnI) EML540_13105 PF05845 Bacterial phosphonate metabolism protein (PhnH) EML540_13110 PF06754 Phosphonate metabolism protein PhnG EML540_13115 PF07702 UTRA domain EML540_13115 PF00392 Bacterial regulatory proteins, gntR family EML540_13120 PF05173 Dihydrodipicolinate reductase, C-terminus EML540_13120 PF01113 Dihydrodipicolinate reductase, N-terminus EML540_13125 PF02685 Glucokinase EML540_13130 PF02142 MGS-like domain EML540_13135 PF03411 Penicillin-insensitive murein endopeptidase EML540_13140 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_13145 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13150 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_13150 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13155 PF00005 ABC transporter EML540_13155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_13165 PF00120 Glutamine synthetase, catalytic domain EML540_13170 PF01266 FAD dependent oxidoreductase EML540_13180 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13185 PF00005 ABC transporter EML540_13190 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13195 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML540_13205 PF02082 Transcriptional regulator EML540_13210 PF13416 Bacterial extracellular solute-binding protein EML540_13220 PF05987 Bacterial protein of unknown function (DUF898) EML540_13225 PF00171 Aldehyde dehydrogenase family EML540_13235 PF03466 LysR substrate binding domain EML540_13235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_13240 PF00892 EamA-like transporter family EML540_13255 PF00877 NlpC/P60 family EML540_13265 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EML540_13265 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EML540_13270 PF02789 Cytosol aminopeptidase family, N-terminal domain EML540_13270 PF00883 Cytosol aminopeptidase family, catalytic domain EML540_13290 PF00437 Type II/IV secretion system protein EML540_13305 PF00263 Bacterial type II and III secretion system protein EML540_13305 PF13629 Pilus formation protein N terminal region EML540_13305 PF04972 BON domain EML540_13350 PF07411 Domain of unknown function (DUF1508) EML540_13355 PF01183 Glycosyl hydrolases family 25 EML540_13360 PF00892 EamA-like transporter family EML540_13365 PF00392 Bacterial regulatory proteins, gntR family EML540_13365 PF00155 Aminotransferase class I and II EML540_13395 PF00679 Elongation factor G C-terminus EML540_13395 PF00009 Elongation factor Tu GTP binding domain EML540_13395 PF03144 Elongation factor Tu domain 2 EML540_13395 PF06421 GTP-binding protein LepA C-terminus EML540_13400 PF00795 Carbon-nitrogen hydrolase EML540_13430 PF02311 AraC-like ligand binding domain EML540_13430 PF12833 Helix-turn-helix domain EML540_13435 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_13460 PF05198 Translation initiation factor IF-3, N-terminal domain EML540_13460 PF00707 Translation initiation factor IF-3, C-terminal domain EML540_13465 PF01632 Ribosomal protein L35 EML540_13470 PF00453 Ribosomal protein L20 EML540_13480 PF01409 tRNA synthetases class II core domain (F) EML540_13480 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EML540_13485 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EML540_13485 PF03147 Ferredoxin-fold anticodon binding domain EML540_13485 PF01588 Putative tRNA binding domain EML540_13485 PF03483 B3/4 domain EML540_13485 PF03484 tRNA synthetase B5 domain EML540_13490 PF00248 Aldo/keto reductase family EML540_13495 PF03466 LysR substrate binding domain EML540_13495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_13505 PF00248 Aldo/keto reductase family EML540_13510 PF12833 Helix-turn-helix domain EML540_13510 PF01965 DJ-1/PfpI family EML540_13520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_13520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_13535 PF02601 Exonuclease VII, large subunit EML540_13535 PF13742 OB-fold nucleic acid binding domain EML540_13540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_13540 PF13378 Enolase C-terminal domain-like EML540_13545 PF00392 Bacterial regulatory proteins, gntR family EML540_13545 PF07729 FCD domain EML540_13550 PF01047 MarR family EML540_13555 PF00892 EamA-like transporter family EML540_13560 PF02073 Thermophilic metalloprotease (M29) EML540_13565 PF04073 Aminoacyl-tRNA editing domain EML540_13570 PF03960 ArsC family EML540_13585 PF00440 Bacterial regulatory proteins, tetR family EML540_13595 PF00117 Glutamine amidotransferase class-I EML540_13595 PF00958 GMP synthase C terminal domain EML540_13610 PF03073 TspO/MBR family EML540_13635 PF01029 NusB family EML540_13635 PF01189 16S rRNA methyltransferase RsmB/F EML540_13640 PF03330 Lytic transglycolase EML540_13650 PF08331 Domain of unknown function (DUF1730) EML540_13655 PF00043 Glutathione S-transferase, C-terminal domain EML540_13655 PF13417 Glutathione S-transferase, N-terminal domain EML540_13660 PF02673 Bacitracin resistance protein BacA EML540_13680 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EML540_13690 PF00398 Ribosomal RNA adenine dimethylase EML540_13695 PF00712 DNA polymerase III beta subunit, N-terminal domain EML540_13695 PF02768 DNA polymerase III beta subunit, C-terminal domain EML540_13695 PF02767 DNA polymerase III beta subunit, central domain EML540_13700 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_13705 PF02021 Uncharacterised protein family UPF0102 EML540_13710 PF14602 Hexapeptide repeat of succinyl-transferase EML540_13710 PF12464 Maltose acetyltransferase EML540_13715 PF13416 Bacterial extracellular solute-binding protein EML540_13720 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13725 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13730 PF00005 ABC transporter EML540_13740 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EML540_13740 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EML540_13745 PF13335 Magnesium chelatase, subunit ChlI C-terminal EML540_13745 PF01078 Magnesium chelatase, subunit ChlI EML540_13750 PF00291 Pyridoxal-phosphate dependent enzyme EML540_13755 PF01810 LysE type translocator EML540_13760 PF00692 dUTPase EML540_13765 PF00009 Elongation factor Tu GTP binding domain EML540_13765 PF16658 Class II release factor RF3, C-terminal domain EML540_13765 PF03144 Elongation factor Tu domain 2 EML540_13770 PF04127 DNA / pantothenate metabolism flavoprotein EML540_13770 PF02441 Flavoprotein EML540_13785 PF03109 ABC1 family EML540_13790 PF01209 ubiE/COQ5 methyltransferase family EML540_13795 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EML540_13795 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EML540_13795 PF06827 Zinc finger found in FPG and IleRS EML540_13800 PF00378 Enoyl-CoA hydratase/isomerase EML540_13805 PF01649 Ribosomal protein S20 EML540_13835 PF01757 Acyltransferase family EML540_13885 PF00392 Bacterial regulatory proteins, gntR family EML540_13885 PF07729 FCD domain EML540_13890 PF00005 ABC transporter EML540_13890 PF17912 MalK OB fold domain EML540_13895 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13900 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13905 PF01547 Bacterial extracellular solute-binding protein EML540_13925 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_13925 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_13935 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_13935 PF13378 Enolase C-terminal domain-like EML540_13965 PF00196 Bacterial regulatory proteins, luxR family EML540_13965 PF00072 Response regulator receiver domain EML540_13970 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13975 PF00528 Binding-protein-dependent transport system inner membrane component EML540_13975 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_13980 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_13980 PF00005 ABC transporter EML540_13995 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_14010 PF01112 Asparaginase EML540_14020 PF01266 FAD dependent oxidoreductase EML540_14025 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_14025 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14030 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14035 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_14040 PF01266 FAD dependent oxidoreductase EML540_14045 PF00300 Histidine phosphatase superfamily (branch 1) EML540_14045 PF00106 short chain dehydrogenase EML540_14055 PF00005 ABC transporter EML540_14055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_14070 PF00535 Glycosyl transferase family 2 EML540_14070 PF07238 PilZ domain EML540_14070 PF03552 Cellulose synthase EML540_14080 PF00999 Sodium/hydrogen exchanger family EML540_14085 PF00005 ABC transporter EML540_14085 PF06472 ABC transporter transmembrane region 2 EML540_14090 PF00990 Diguanylate cyclase, GGDEF domain EML540_14095 PF00356 Bacterial regulatory proteins, lacI family EML540_14105 PF00005 ABC transporter EML540_14110 PF02653 Branched-chain amino acid transport system / permease component EML540_14115 PF02126 Phosphotriesterase family EML540_14125 PF00294 pfkB family carbohydrate kinase EML540_14135 PF07687 Peptidase dimerisation domain EML540_14135 PF01546 Peptidase family M20/M25/M40 EML540_14145 PF00501 AMP-binding enzyme EML540_14145 PF00975 Thioesterase domain EML540_14145 PF00550 Phosphopantetheine attachment site EML540_14145 PF00668 Condensation domain EML540_14145 PF13193 AMP-binding enzyme C-terminal domain EML540_14150 PF01177 Asp/Glu/Hydantoin racemase EML540_14160 PF00440 Bacterial regulatory proteins, tetR family EML540_14165 PF00860 Permease family EML540_14170 PF00144 Beta-lactamase EML540_14175 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_14175 PF03466 LysR substrate binding domain EML540_14205 PF08281 Sigma-70, region 4 EML540_14205 PF04542 Sigma-70 region 2 EML540_14210 PF01177 Asp/Glu/Hydantoin racemase EML540_14215 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14220 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14230 PF08402 TOBE domain EML540_14230 PF00005 ABC transporter EML540_14255 PF13426 PAS domain EML540_14255 PF08447 PAS fold EML540_14255 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_14265 PF13416 Bacterial extracellular solute-binding protein EML540_14270 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14275 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14280 PF17912 MalK OB fold domain EML540_14280 PF00005 ABC transporter EML540_14285 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14290 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14300 PF00005 ABC transporter EML540_14300 PF17912 MalK OB fold domain EML540_14305 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EML540_14320 PF00356 Bacterial regulatory proteins, lacI family EML540_14330 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_14330 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_14335 PF01261 Xylose isomerase-like TIM barrel EML540_14340 PF00005 ABC transporter EML540_14340 PF03459 TOBE domain EML540_14340 PF17912 MalK OB fold domain EML540_14345 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14350 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14355 PF13416 Bacterial extracellular solute-binding protein EML540_14360 PF17938 Tetracyclin repressor-like, C-terminal domain EML540_14360 PF00440 Bacterial regulatory proteins, tetR family EML540_14365 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_14365 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_14380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_14380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_14390 PF00313 'Cold-shock' DNA-binding domain EML540_14400 PF01165 Ribosomal protein S21 EML540_14425 PF07470 Glycosyl Hydrolase Family 88 EML540_14430 PF00295 Glycosyl hydrolases family 28 EML540_14440 PF00005 ABC transporter EML540_14440 PF08402 TOBE domain EML540_14445 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14450 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14455 PF02311 AraC-like ligand binding domain EML540_14455 PF12833 Helix-turn-helix domain EML540_14460 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_14470 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_14475 PF04909 Amidohydrolase EML540_14480 PF13378 Enolase C-terminal domain-like EML540_14480 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_14485 PF00701 Dihydrodipicolinate synthetase family EML540_14495 PF04962 KduI/IolB family EML540_14500 PF01370 NAD dependent epimerase/dehydratase family EML540_14505 PF00392 Bacterial regulatory proteins, gntR family EML540_14505 PF07729 FCD domain EML540_14515 PF01321 Creatinase/Prolidase N-terminal domain EML540_14515 PF00557 Metallopeptidase family M24 EML540_14520 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_14520 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_14525 PF00005 ABC transporter EML540_14525 PF17912 MalK OB fold domain EML540_14530 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14535 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14540 PF13416 Bacterial extracellular solute-binding protein EML540_14550 PF12833 Helix-turn-helix domain EML540_14550 PF02311 AraC-like ligand binding domain EML540_14555 PF07690 Major Facilitator Superfamily EML540_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_14560 PF03466 LysR substrate binding domain EML540_14565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_14575 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_14580 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_14580 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML540_14595 PF00356 Bacterial regulatory proteins, lacI family EML540_14600 PF16912 Glucose dehydrogenase C-terminus EML540_14600 PF08240 Alcohol dehydrogenase GroES-like domain EML540_14615 PF00294 pfkB family carbohydrate kinase EML540_14620 PF08013 Tagatose 6 phosphate kinase EML540_14625 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14630 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14635 PF00005 ABC transporter EML540_14635 PF08402 TOBE domain EML540_14640 PF00005 ABC transporter EML540_14640 PF17912 MalK OB fold domain EML540_14645 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14650 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14655 PF01547 Bacterial extracellular solute-binding protein EML540_14660 PF01053 Cys/Met metabolism PLP-dependent enzyme EML540_14675 PF01297 Zinc-uptake complex component A periplasmic EML540_14680 PF00950 ABC 3 transport family EML540_14685 PF00005 ABC transporter EML540_14690 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML540_14690 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_14705 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_14705 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML540_14710 PF13416 Bacterial extracellular solute-binding protein EML540_14715 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14720 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14725 PF00005 ABC transporter EML540_14725 PF08402 TOBE domain EML540_14740 PF03922 OmpW family EML540_14760 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML540_14760 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML540_14765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_14765 PF03466 LysR substrate binding domain EML540_14770 PF13407 Periplasmic binding protein domain EML540_14775 PF02653 Branched-chain amino acid transport system / permease component EML540_14780 PF00005 ABC transporter EML540_14785 PF00440 Bacterial regulatory proteins, tetR family EML540_14785 PF08361 MAATS-type transcriptional repressor, C-terminal region EML540_14790 PF00873 AcrB/AcrD/AcrF family EML540_14795 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_14795 PF00529 HlyD membrane-fusion protein of T1SS EML540_14800 PF13426 PAS domain EML540_14800 PF08447 PAS fold EML540_14800 PF05231 MASE1 EML540_14800 PF00563 EAL domain EML540_14800 PF08448 PAS fold EML540_14800 PF00990 Diguanylate cyclase, GGDEF domain EML540_14805 PF07883 Cupin domain EML540_14805 PF05899 Protein of unknown function (DUF861) EML540_14815 PF00563 EAL domain EML540_14815 PF08447 PAS fold EML540_14815 PF08448 PAS fold EML540_14815 PF00990 Diguanylate cyclase, GGDEF domain EML540_14820 PF02615 Malate/L-lactate dehydrogenase EML540_14825 PF01580 FtsK/SpoIIIE family EML540_14825 PF09397 Ftsk gamma domain EML540_14825 PF17854 FtsK alpha domain EML540_14825 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EML540_14835 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_14840 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14845 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14850 PF00005 ABC transporter EML540_14850 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_14855 PF00005 ABC transporter EML540_14855 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_14860 PF00266 Aminotransferase class-V EML540_14870 PF00920 Dehydratase family EML540_14880 PF13407 Periplasmic binding protein domain EML540_14885 PF00005 ABC transporter EML540_14890 PF02653 Branched-chain amino acid transport system / permease component EML540_14895 PF02653 Branched-chain amino acid transport system / permease component EML540_14900 PF07729 FCD domain EML540_14900 PF00392 Bacterial regulatory proteins, gntR family EML540_14910 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML540_14910 PF14579 Helix-hairpin-helix motif EML540_14910 PF01336 OB-fold nucleic acid binding domain EML540_14910 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML540_14910 PF02811 PHP domain EML540_14930 PF13660 Domain of unknown function (DUF4147) EML540_14930 PF05161 MOFRL family EML540_14940 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_14940 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_14950 PF03459 TOBE domain EML540_14950 PF00005 ABC transporter EML540_14950 PF17912 MalK OB fold domain EML540_14955 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14960 PF00528 Binding-protein-dependent transport system inner membrane component EML540_14965 PF01547 Bacterial extracellular solute-binding protein EML540_14975 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_14985 PF01425 Amidase EML540_14990 PF08448 PAS fold EML540_14990 PF08447 PAS fold EML540_14990 PF00563 EAL domain EML540_14990 PF00990 Diguanylate cyclase, GGDEF domain EML540_14995 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_15005 PF03776 Septum formation topological specificity factor MinE EML540_15010 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_15015 PF05209 Septum formation inhibitor MinC, N-terminal domain EML540_15015 PF03775 Septum formation inhibitor MinC, C-terminal domain EML540_15020 PF13419 Haloacid dehalogenase-like hydrolase EML540_15025 PF00392 Bacterial regulatory proteins, gntR family EML540_15025 PF07729 FCD domain EML540_15030 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_15040 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_15045 PF00107 Zinc-binding dehydrogenase EML540_15045 PF08240 Alcohol dehydrogenase GroES-like domain EML540_15050 PF03786 D-mannonate dehydratase (UxuA) EML540_15060 PF00171 Aldehyde dehydrogenase family EML540_15065 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_15070 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_15075 PF00005 ABC transporter EML540_15075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_15080 PF03841 L-seryl-tRNA selenium transferase EML540_15095 PF01979 Amidohydrolase family EML540_15100 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15100 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_15105 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_15115 PF00534 Glycosyl transferases group 1 EML540_15115 PF13439 Glycosyltransferase Family 4 EML540_15120 PF02563 Polysaccharide biosynthesis/export protein EML540_15125 PF13533 Biotin-lipoyl like EML540_15130 PF00873 AcrB/AcrD/AcrF family EML540_15140 PF13018 Extended Signal Peptide of Type V secretion system EML540_15145 PF01613 Flavin reductase like domain EML540_15150 PF00248 Aldo/keto reductase family EML540_15155 PF00296 Luciferase-like monooxygenase EML540_15165 PF08402 TOBE domain EML540_15165 PF00005 ABC transporter EML540_15170 PF01547 Bacterial extracellular solute-binding protein EML540_15175 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15180 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15185 PF01055 Glycosyl hydrolases family 31 EML540_15190 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15195 PF09084 NMT1/THI5 like EML540_15200 PF02110 Hydroxyethylthiazole kinase family EML540_15205 PF02581 Thiamine monophosphate synthase EML540_15210 PF08543 Phosphomethylpyrimidine kinase EML540_15215 PF01037 Lrp/AsnC ligand binding domain EML540_15220 PF01168 Alanine racemase, N-terminal domain EML540_15220 PF00842 Alanine racemase, C-terminal domain EML540_15225 PF01266 FAD dependent oxidoreductase EML540_15240 PF00158 Sigma-54 interaction domain EML540_15240 PF00072 Response regulator receiver domain EML540_15240 PF02954 Bacterial regulatory protein, Fis family EML540_15245 PF00512 His Kinase A (phospho-acceptor) domain EML540_15245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_15245 PF02743 Cache domain EML540_15250 PF00375 Sodium:dicarboxylate symporter family EML540_15255 PF00892 EamA-like transporter family EML540_15260 PF00202 Aminotransferase class-III EML540_15275 PF01546 Peptidase family M20/M25/M40 EML540_15275 PF07687 Peptidase dimerisation domain EML540_15285 PF01270 Glycosyl hydrolases family 8 EML540_15295 PF07238 PilZ domain EML540_15295 PF00535 Glycosyl transferase family 2 EML540_15295 PF03552 Cellulose synthase EML540_15325 PF16363 GDP-mannose 4,6 dehydratase EML540_15330 PF16363 GDP-mannose 4,6 dehydratase EML540_15340 PF00196 Bacterial regulatory proteins, luxR family EML540_15340 PF00072 Response regulator receiver domain EML540_15355 PF00664 ABC transporter transmembrane region EML540_15355 PF00005 ABC transporter EML540_15360 PF00529 HlyD membrane-fusion protein of T1SS EML540_15375 PF02563 Polysaccharide biosynthesis/export protein EML540_15380 PF02397 Bacterial sugar transferase EML540_15390 PF00202 Aminotransferase class-III EML540_15395 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_15395 PF00672 HAMP domain EML540_15400 PF17969 L,D-transpeptidase C-terminal domain EML540_15400 PF01476 LysM domain EML540_15400 PF03734 L,D-transpeptidase catalytic domain EML540_15420 PF02245 Methylpurine-DNA glycosylase (MPG) EML540_15435 PF00356 Bacterial regulatory proteins, lacI family EML540_15440 PF01547 Bacterial extracellular solute-binding protein EML540_15445 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15450 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15455 PF17912 MalK OB fold domain EML540_15455 PF00005 ABC transporter EML540_15455 PF03459 TOBE domain EML540_15465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_15465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_15470 PF04055 Radical SAM superfamily EML540_15475 PF01242 6-pyruvoyl tetrahydropterin synthase EML540_15480 PF06508 Queuosine biosynthesis protein QueC EML540_15485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_15485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_15495 PF17912 MalK OB fold domain EML540_15495 PF00005 ABC transporter EML540_15500 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15505 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15510 PF01547 Bacterial extracellular solute-binding protein EML540_15515 PF01050 Mannose-6-phosphate isomerase EML540_15515 PF00483 Nucleotidyl transferase EML540_15520 PF01011 PQQ enzyme repeat EML540_15525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_15525 PF03466 LysR substrate binding domain EML540_15530 PF01515 Phosphate acetyl/butaryl transferase EML540_15530 PF03949 Malic enzyme, NAD binding domain EML540_15530 PF00390 Malic enzyme, N-terminal domain EML540_15535 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_15540 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15545 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15550 PF00005 ABC transporter EML540_15555 PF03972 MmgE/PrpD family EML540_15560 PF00296 Luciferase-like monooxygenase EML540_15565 PF13426 PAS domain EML540_15565 PF08447 PAS fold EML540_15565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_15570 PF01266 FAD dependent oxidoreductase EML540_15585 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML540_15590 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_15595 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_15600 PF07722 Peptidase C26 EML540_15605 PF02653 Branched-chain amino acid transport system / permease component EML540_15610 PF00005 ABC transporter EML540_15615 PF13407 Periplasmic binding protein domain EML540_15620 PF01546 Peptidase family M20/M25/M40 EML540_15625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_15635 PF00005 ABC transporter EML540_15635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_15640 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15640 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_15645 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_15650 PF03466 LysR substrate binding domain EML540_15655 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_15655 PF00529 HlyD membrane-fusion protein of T1SS EML540_15660 PF00005 ABC transporter EML540_15660 PF00664 ABC transporter transmembrane region EML540_15680 PF08281 Sigma-70, region 4 EML540_15680 PF04542 Sigma-70 region 2 EML540_15680 PF12680 SnoaL-like domain EML540_15685 PF00005 ABC transporter EML540_15690 PF01032 FecCD transport family EML540_15705 PF01209 ubiE/COQ5 methyltransferase family EML540_15710 PF00127 Copper binding proteins, plastocyanin/azurin family EML540_15715 PF00005 ABC transporter EML540_15720 PF01032 FecCD transport family EML540_15735 PF01546 Peptidase family M20/M25/M40 EML540_15735 PF07687 Peptidase dimerisation domain EML540_15740 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_15750 PF00171 Aldehyde dehydrogenase family EML540_15755 PF00180 Isocitrate/isopropylmalate dehydrogenase EML540_15760 PF00171 Aldehyde dehydrogenase family EML540_15765 PF01266 FAD dependent oxidoreductase EML540_15780 PF00202 Aminotransferase class-III EML540_15790 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_15795 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15800 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15800 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_15805 PF00005 ABC transporter EML540_15805 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_15810 PF01037 Lrp/AsnC ligand binding domain EML540_15815 PF01266 FAD dependent oxidoreductase EML540_15825 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_15830 PF00005 ABC transporter EML540_15840 PF01546 Peptidase family M20/M25/M40 EML540_15840 PF07687 Peptidase dimerisation domain EML540_15845 PF00296 Luciferase-like monooxygenase EML540_15850 PF00296 Luciferase-like monooxygenase EML540_15855 PF02082 Transcriptional regulator EML540_15865 PF01613 Flavin reductase like domain EML540_15870 PF00296 Luciferase-like monooxygenase EML540_15885 PF00296 Luciferase-like monooxygenase EML540_15890 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_15890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_15890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_15900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_15905 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15910 PF00528 Binding-protein-dependent transport system inner membrane component EML540_15915 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_15915 PF00005 ABC transporter EML540_15920 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_15920 PF00005 ABC transporter EML540_15925 PF00248 Aldo/keto reductase family EML540_15930 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_15930 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML540_15935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_15935 PF03466 LysR substrate binding domain EML540_15940 PF00296 Luciferase-like monooxygenase EML540_15955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_15960 PF07687 Peptidase dimerisation domain EML540_15960 PF01546 Peptidase family M20/M25/M40 EML540_15965 PF00296 Luciferase-like monooxygenase EML540_15970 PF05368 NmrA-like family EML540_15980 PF00296 Luciferase-like monooxygenase EML540_15985 PF00296 Luciferase-like monooxygenase EML540_15990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_15990 PF13378 Enolase C-terminal domain-like EML540_16000 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_16005 PF00005 ABC transporter EML540_16005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_16010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_16010 PF00005 ABC transporter EML540_16015 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_16015 PF00528 Binding-protein-dependent transport system inner membrane component EML540_16020 PF00528 Binding-protein-dependent transport system inner membrane component EML540_16030 PF07729 FCD domain EML540_16030 PF00392 Bacterial regulatory proteins, gntR family EML540_16040 PF00561 alpha/beta hydrolase fold EML540_16055 PF04273 Putative phosphatase (DUF442) EML540_16055 PF00753 Metallo-beta-lactamase superfamily EML540_16065 PF04143 Sulphur transport EML540_16075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EML540_16075 PF01676 Metalloenzyme superfamily EML540_16080 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML540_16080 PF02817 e3 binding domain EML540_16080 PF00364 Biotin-requiring enzyme EML540_16085 PF02780 Transketolase, C-terminal domain EML540_16085 PF02779 Transketolase, pyrimidine binding domain EML540_16090 PF00676 Dehydrogenase E1 component EML540_16090 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal EML540_16095 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_16095 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_16095 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_16100 PF02803 Thiolase, C-terminal domain EML540_16100 PF00108 Thiolase, N-terminal domain EML540_16105 PF01037 Lrp/AsnC ligand binding domain EML540_16110 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_16110 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_16110 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_16115 PF01039 Carboxyl transferase domain EML540_16120 PF00364 Biotin-requiring enzyme EML540_16120 PF02785 Biotin carboxylase C-terminal domain EML540_16120 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_16120 PF00289 Biotin carboxylase, N-terminal domain EML540_16125 PF00682 HMGL-like EML540_16130 PF00378 Enoyl-CoA hydratase/isomerase EML540_16135 PF02569 Pantoate-beta-alanine ligase EML540_16140 PF02548 Ketopantoate hydroxymethyltransferase EML540_16145 PF01261 Xylose isomerase-like TIM barrel EML540_16150 PF00596 Class II Aldolase and Adducin N-terminal domain EML540_16155 PF00455 DeoR C terminal sensor domain EML540_16155 PF08220 DeoR-like helix-turn-helix domain EML540_16160 PF13407 Periplasmic binding protein domain EML540_16165 PF00005 ABC transporter EML540_16170 PF02653 Branched-chain amino acid transport system / permease component EML540_16175 PF02653 Branched-chain amino acid transport system / permease component EML540_16180 PF05336 L-rhamnose mutarotase EML540_16190 PF00561 alpha/beta hydrolase fold EML540_16200 PF00990 Diguanylate cyclase, GGDEF domain EML540_16200 PF08447 PAS fold EML540_16200 PF08448 PAS fold EML540_16200 PF00563 EAL domain EML540_16210 PF00171 Aldehyde dehydrogenase family EML540_16220 PF00005 ABC transporter EML540_16225 PF00528 Binding-protein-dependent transport system inner membrane component EML540_16230 PF00528 Binding-protein-dependent transport system inner membrane component EML540_16255 PF08241 Methyltransferase domain EML540_16265 PF00795 Carbon-nitrogen hydrolase EML540_16270 PF00462 Glutaredoxin EML540_16280 PF08241 Methyltransferase domain EML540_16295 PF00293 NUDIX domain EML540_16300 PF13508 Acetyltransferase (GNAT) domain EML540_16300 PF00583 Acetyltransferase (GNAT) family EML540_16305 PF01960 ArgJ family EML540_16315 PF02810 SEC-C motif EML540_16315 PF07517 SecA DEAD-like domain EML540_16315 PF01043 SecA preprotein cross-linking domain EML540_16315 PF07516 SecA Wing and Scaffold domain EML540_16320 PF00892 EamA-like transporter family EML540_16325 PF01757 Acyltransferase family EML540_16355 PF00248 Aldo/keto reductase family EML540_16360 PF03786 D-mannonate dehydratase (UxuA) EML540_16365 PF08125 Mannitol dehydrogenase C-terminal domain EML540_16365 PF01232 Mannitol dehydrogenase Rossmann domain EML540_16370 PF00106 short chain dehydrogenase EML540_16375 PF00392 Bacterial regulatory proteins, gntR family EML540_16375 PF07729 FCD domain EML540_16385 PF02653 Branched-chain amino acid transport system / permease component EML540_16390 PF02653 Branched-chain amino acid transport system / permease component EML540_16395 PF00005 ABC transporter EML540_16420 PF00149 Calcineurin-like phosphoesterase EML540_16425 PF02733 Dak1 domain EML540_16425 PF02734 DAK2 domain EML540_16430 PF02080 TrkA-C domain EML540_16430 PF03600 Citrate transporter EML540_16450 PF13439 Glycosyltransferase Family 4 EML540_16460 PF01943 Polysaccharide biosynthesis protein EML540_16465 PF13579 Glycosyl transferase 4-like domain EML540_16465 PF00534 Glycosyl transferases group 1 EML540_16485 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_16485 PF13807 G-rich domain on putative tyrosine kinase EML540_16485 PF02706 Chain length determinant protein EML540_16505 PF13439 Glycosyltransferase Family 4 EML540_16505 PF00534 Glycosyl transferases group 1 EML540_16510 PF00534 Glycosyl transferases group 1 EML540_16510 PF13439 Glycosyltransferase Family 4 EML540_16525 PF01272 Transcription elongation factor, GreA/GreB, C-term EML540_16525 PF03449 Transcription elongation factor, N-terminal EML540_16530 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) EML540_16530 PF00722 Glycosyl hydrolases family 16 EML540_16560 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding EML540_16575 PF01381 Helix-turn-helix EML540_16585 PF00005 ABC transporter EML540_16590 PF02653 Branched-chain amino acid transport system / permease component EML540_16595 PF13407 Periplasmic binding protein domain EML540_16605 PF01266 FAD dependent oxidoreductase EML540_16605 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML540_16615 PF02310 B12 binding domain EML540_16615 PF01642 Methylmalonyl-CoA mutase EML540_16620 PF02785 Biotin carboxylase C-terminal domain EML540_16620 PF00364 Biotin-requiring enzyme EML540_16620 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_16620 PF18140 Propionyl-coenzyme A carboxylase BT domain EML540_16620 PF00289 Biotin carboxylase, N-terminal domain EML540_16630 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family EML540_16640 PF02798 Glutathione S-transferase, N-terminal domain EML540_16645 PF01039 Carboxyl transferase domain EML540_16650 PF09856 Predicted transcriptional regulator (DUF2083) EML540_16650 PF06114 IrrE N-terminal-like domain EML540_16650 PF01381 Helix-turn-helix EML540_16655 PF06029 AlkA N-terminal domain EML540_16655 PF02805 Metal binding domain of Ada EML540_16655 PF00730 HhH-GPD superfamily base excision DNA repair protein EML540_16655 PF12833 Helix-turn-helix domain EML540_16660 PF00749 tRNA synthetases class I (E and Q), catalytic domain EML540_16670 PF00106 short chain dehydrogenase EML540_16680 PF01923 Cobalamin adenosyltransferase EML540_16690 PF01012 Electron transfer flavoprotein domain EML540_16695 PF01012 Electron transfer flavoprotein domain EML540_16695 PF00766 Electron transfer flavoprotein FAD-binding domain EML540_16700 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EML540_16700 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EML540_16705 PF08534 Redoxin EML540_16710 PF14698 Argininosuccinate lyase C-terminal EML540_16710 PF00206 Lyase EML540_16720 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML540_16720 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML540_16730 PF00072 Response regulator receiver domain EML540_16735 PF00156 Phosphoribosyl transferase domain EML540_16745 PF00005 ABC transporter EML540_16765 PF04752 ChaC-like protein EML540_16775 PF02153 Prephenate dehydrogenase EML540_16780 PF00155 Aminotransferase class I and II EML540_16785 PF01209 ubiE/COQ5 methyltransferase family EML540_16790 PF00753 Metallo-beta-lactamase superfamily EML540_16790 PF16123 Hydroxyacylglutathione hydrolase C-terminus EML540_16805 PF00830 Ribosomal L28 family EML540_16810 PF02592 Putative vitamin uptake transporter EML540_16825 PF06213 Cobalamin biosynthesis protein CobT EML540_16825 PF11775 Cobalamin biosynthesis protein CobT VWA domain EML540_16830 PF08406 CbbQ/NirQ/NorQ C-terminal EML540_16830 PF12556 Cobaltochelatase CobS subunit N terminal EML540_16830 PF07728 AAA domain (dynein-related subfamily) EML540_16835 PF00226 DnaJ domain EML540_16840 PF01722 BolA-like protein EML540_16845 PF01761 3-dehydroquinate synthase EML540_16850 PF01202 Shikimate kinase EML540_16860 PF00589 Phage integrase family EML540_16860 PF02899 Phage integrase, N-terminal SAM-like domain EML540_16865 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EML540_16870 PF03734 L,D-transpeptidase catalytic domain EML540_16875 PF00581 Rhodanese-like domain EML540_16875 PF01206 Sulfurtransferase TusA EML540_16880 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML540_16880 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_16885 PF00768 D-alanyl-D-alanine carboxypeptidase EML540_16885 PF07943 Penicillin-binding protein 5, C-terminal domain EML540_16890 PF01546 Peptidase family M20/M25/M40 EML540_16890 PF07687 Peptidase dimerisation domain EML540_16900 PF01165 Ribosomal protein S21 EML540_16925 PF04717 Type VI secretion system, phage-baseplate injector EML540_16950 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) EML540_16970 PF00583 Acetyltransferase (GNAT) family EML540_17005 PF00561 alpha/beta hydrolase fold EML540_17010 PF00106 short chain dehydrogenase EML540_17015 PF02082 Transcriptional regulator EML540_17020 PF02261 Aspartate decarboxylase EML540_17035 PF13193 AMP-binding enzyme C-terminal domain EML540_17035 PF00668 Condensation domain EML540_17035 PF00550 Phosphopantetheine attachment site EML540_17035 PF00501 AMP-binding enzyme EML540_17045 PF00668 Condensation domain EML540_17045 PF00550 Phosphopantetheine attachment site EML540_17045 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_17045 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_17045 PF16197 Ketoacyl-synthetase C-terminal extension EML540_17045 PF00698 Acyl transferase domain EML540_17050 PF00501 AMP-binding enzyme EML540_17055 PF00668 Condensation domain EML540_17055 PF13193 AMP-binding enzyme C-terminal domain EML540_17055 PF00550 Phosphopantetheine attachment site EML540_17055 PF00501 AMP-binding enzyme EML540_17060 PF13649 Methyltransferase domain EML540_17065 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_17065 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_17065 PF00202 Aminotransferase class-III EML540_17065 PF00550 Phosphopantetheine attachment site EML540_17065 PF00501 AMP-binding enzyme EML540_17065 PF13193 AMP-binding enzyme C-terminal domain EML540_17065 PF16197 Ketoacyl-synthetase C-terminal extension EML540_17065 PF00668 Condensation domain EML540_17085 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_17085 PF00550 Phosphopantetheine attachment site EML540_17085 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_17085 PF16197 Ketoacyl-synthetase C-terminal extension EML540_17085 PF00668 Condensation domain EML540_17085 PF00698 Acyl transferase domain EML540_17090 PF00501 AMP-binding enzyme EML540_17090 PF00550 Phosphopantetheine attachment site EML540_17090 PF00668 Condensation domain EML540_17090 PF13193 AMP-binding enzyme C-terminal domain EML540_17095 PF00668 Condensation domain EML540_17095 PF13193 AMP-binding enzyme C-terminal domain EML540_17095 PF00501 AMP-binding enzyme EML540_17095 PF00550 Phosphopantetheine attachment site EML540_17100 PF00501 AMP-binding enzyme EML540_17100 PF13193 AMP-binding enzyme C-terminal domain EML540_17100 PF00668 Condensation domain EML540_17100 PF00501 AMP-binding enzyme EML540_17100 PF07993 Male sterility protein EML540_17100 PF00668 Condensation domain EML540_17100 PF13193 AMP-binding enzyme C-terminal domain EML540_17100 PF07993 Male sterility protein EML540_17100 PF00550 Phosphopantetheine attachment site EML540_17100 PF00550 Phosphopantetheine attachment site EML540_17115 PF07715 TonB-dependent Receptor Plug Domain EML540_17120 PF01497 Periplasmic binding protein EML540_17125 PF01032 FecCD transport family EML540_17130 PF01032 FecCD transport family EML540_17135 PF00005 ABC transporter EML540_17150 PF00905 Penicillin binding protein transpeptidase domain EML540_17150 PF00912 Transglycosylase EML540_17150 PF06832 Penicillin-Binding Protein C-terminus Family EML540_17155 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain EML540_17155 PF00207 Alpha-2-macroglobulin family EML540_17155 PF07703 Alpha-2-macroglobulin bait region domain EML540_17155 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain EML540_17155 PF01835 MG2 domain EML540_17155 PF17962 Bacterial macroglobulin domain 6 EML540_17155 PF11974 Bacterial alpha-2-macroglobulin MG3 domain EML540_17155 PF07678 A-macroglobulin TED domain EML540_17155 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain EML540_17160 PF03966 Trm112p-like protein EML540_17170 PF00085 Thioredoxin EML540_17185 PF02798 Glutathione S-transferase, N-terminal domain EML540_17210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_17210 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_17210 PF01842 ACT domain EML540_17220 PF13505 Outer membrane protein beta-barrel domain EML540_17225 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML540_17225 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML540_17225 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML540_17225 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML540_17230 PF00004 ATPase family associated with various cellular activities (AAA) EML540_17230 PF17862 AAA+ lid domain EML540_17230 PF01434 Peptidase family M41 EML540_17230 PF06480 FtsH Extracellular EML540_17235 PF01171 PP-loop family EML540_17245 PF00691 OmpA family EML540_17250 PF07676 WD40-like Beta Propeller Repeat EML540_17250 PF04052 TolB amino-terminal domain EML540_17260 PF02472 Biopolymer transport protein ExbD/TolR EML540_17265 PF01618 MotA/TolQ/ExbB proton channel family EML540_17270 PF03061 Thioesterase superfamily EML540_17280 PF00293 NUDIX domain EML540_17295 PF05496 Holliday junction DNA helicase RuvB P-loop domain EML540_17295 PF05491 RuvB C-terminal winged helix domain EML540_17295 PF17864 RuvB AAA lid domain EML540_17300 PF01330 RuvA N terminal domain EML540_17300 PF07499 RuvA, C-terminal domain EML540_17305 PF02075 Crossover junction endodeoxyribonuclease RuvC EML540_17310 PF00672 HAMP domain EML540_17310 PF02203 Tar ligand binding domain homologue EML540_17310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_17315 PF00296 Luciferase-like monooxygenase EML540_17320 PF01709 Transcriptional regulator EML540_17335 PF13277 YmdB-like protein EML540_17345 PF03471 Transporter associated domain EML540_17345 PF00571 CBS domain EML540_17345 PF01595 Cyclin M transmembrane N-terminal domain EML540_17365 PF00456 Transketolase, thiamine diphosphate binding domain EML540_17365 PF02780 Transketolase, C-terminal domain EML540_17365 PF02779 Transketolase, pyrimidine binding domain EML540_17370 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EML540_17370 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EML540_17375 PF02080 TrkA-C domain EML540_17375 PF03471 Transporter associated domain EML540_17375 PF00999 Sodium/hydrogen exchanger family EML540_17380 PF00162 Phosphoglycerate kinase EML540_17385 PF00274 Fructose-bisphosphate aldolase class-I EML540_17410 PF01197 Ribosomal protein L31 EML540_17415 PF00664 ABC transporter transmembrane region EML540_17415 PF00005 ABC transporter EML540_17420 PF00890 FAD binding domain EML540_17425 PF01389 OmpA-like transmembrane domain EML540_17425 PF00691 OmpA family EML540_17435 PF00459 Inositol monophosphatase family EML540_17465 PF00731 AIR carboxylase EML540_17470 PF02222 ATP-grasp domain EML540_17470 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EML540_17475 PF00444 Ribosomal protein L36 EML540_17485 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) EML540_17505 PF00224 Pyruvate kinase, barrel domain EML540_17505 PF02887 Pyruvate kinase, alpha/beta domain EML540_17510 PF05951 Bacterial protein of unknown function (DUF882) EML540_17515 PF00158 Sigma-54 interaction domain EML540_17515 PF00072 Response regulator receiver domain EML540_17515 PF02954 Bacterial regulatory protein, Fis family EML540_17520 PF08439 Oligopeptidase F EML540_17520 PF01432 Peptidase family M3 EML540_17525 PF01063 Amino-transferase class IV EML540_17530 PF00990 Diguanylate cyclase, GGDEF domain EML540_17535 PF16653 Saccharopine dehydrogenase C-terminal domain EML540_17535 PF03435 Saccharopine dehydrogenase NADP binding domain EML540_17545 PF02872 5'-nucleotidase, C-terminal domain EML540_17545 PF00149 Calcineurin-like phosphoesterase EML540_17550 PF00762 Ferrochelatase EML540_17555 PF16200 C-terminal region of band_7 EML540_17555 PF01145 SPFH domain / Band 7 family EML540_17565 PF01380 SIS domain EML540_17565 PF00571 CBS domain EML540_17580 PF00483 Nucleotidyl transferase EML540_17585 PF13406 Transglycosylase SLT domain EML540_17595 PF00486 Transcriptional regulatory protein, C terminal EML540_17595 PF00072 Response regulator receiver domain EML540_17600 PF00672 HAMP domain EML540_17600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_17600 PF00512 His Kinase A (phospho-acceptor) domain EML540_17605 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EML540_17605 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_17615 PF01493 GXGXG motif EML540_17615 PF00310 Glutamine amidotransferases class-II EML540_17615 PF04898 Glutamate synthase central domain EML540_17615 PF01645 Conserved region in glutamate synthase EML540_17620 PF01212 Beta-eliminating lyase EML540_17625 PF00072 Response regulator receiver domain EML540_17625 PF00486 Transcriptional regulatory protein, C terminal EML540_17630 PF13492 GAF domain EML540_17630 PF00512 His Kinase A (phospho-acceptor) domain EML540_17630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_17630 PF02702 Osmosensitive K+ channel His kinase sensor domain EML540_17630 PF13493 Domain of unknown function (DUF4118) EML540_17635 PF02669 K+-transporting ATPase, c chain EML540_17650 PF03814 Potassium-transporting ATPase A subunit EML540_17660 PF00710 Asparaginase, N-terminal EML540_17660 PF17763 Glutaminase/Asparaginase C-terminal domain EML540_17665 PF00324 Amino acid permease EML540_17670 PF10415 Fumarase C C-terminus EML540_17670 PF00206 Lyase EML540_17675 PF07729 FCD domain EML540_17675 PF00392 Bacterial regulatory proteins, gntR family EML540_17680 PF00873 AcrB/AcrD/AcrF family EML540_17690 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_17690 PF00529 HlyD membrane-fusion protein of T1SS EML540_17700 PF07702 UTRA domain EML540_17700 PF00392 Bacterial regulatory proteins, gntR family EML540_17715 PF00528 Binding-protein-dependent transport system inner membrane component EML540_17720 PF00005 ABC transporter EML540_17720 PF00571 CBS domain EML540_17725 PF00221 Aromatic amino acid lyase EML540_17730 PF07690 Major Facilitator Superfamily EML540_17740 PF01053 Cys/Met metabolism PLP-dependent enzyme EML540_17745 PF01037 Lrp/AsnC ligand binding domain EML540_17750 PF03466 LysR substrate binding domain EML540_17750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_17755 PF00248 Aldo/keto reductase family EML540_17760 PF03466 LysR substrate binding domain EML540_17760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_17765 PF00857 Isochorismatase family EML540_17780 PF05336 L-rhamnose mutarotase EML540_17785 PF07729 FCD domain EML540_17785 PF00392 Bacterial regulatory proteins, gntR family EML540_17790 PF00248 Aldo/keto reductase family EML540_17795 PF08666 SAF domain EML540_17795 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EML540_17800 PF00005 ABC transporter EML540_17805 PF02653 Branched-chain amino acid transport system / permease component EML540_17810 PF02653 Branched-chain amino acid transport system / permease component EML540_17815 PF13407 Periplasmic binding protein domain EML540_17825 PF01717 Cobalamin-independent synthase, Catalytic domain EML540_17825 PF08267 Cobalamin-independent synthase, N-terminal domain EML540_17840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_17840 PF03466 LysR substrate binding domain EML540_17985 PF03061 Thioesterase superfamily EML540_18005 PF04168 A predicted alpha-helical domain with a conserved ER motif. EML540_18005 PF14403 Circularly permuted ATP-grasp type 2 EML540_18010 PF01841 Transglutaminase-like superfamily EML540_18010 PF08379 Bacterial transglutaminase-like N-terminal region EML540_18020 PF12848 ABC transporter EML540_18020 PF00005 ABC transporter EML540_18025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_18025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_18030 PF01070 FMN-dependent dehydrogenase EML540_18040 PF01047 MarR family EML540_18050 PF01791 DeoC/LacD family aldolase EML540_18055 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML540_18055 PF01266 FAD dependent oxidoreductase EML540_18060 PF00248 Aldo/keto reductase family EML540_18070 PF02653 Branched-chain amino acid transport system / permease component EML540_18075 PF00005 ABC transporter EML540_18080 PF13407 Periplasmic binding protein domain EML540_18090 PF00072 Response regulator receiver domain EML540_18100 PF00459 Inositol monophosphatase family EML540_18115 PF00011 Hsp20/alpha crystallin family EML540_18120 PF13593 SBF-like CPA transporter family (DUF4137) EML540_18125 PF03466 LysR substrate binding domain EML540_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18130 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML540_18130 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML540_18145 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18150 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18155 PF00005 ABC transporter EML540_18155 PF17912 MalK OB fold domain EML540_18160 PF03459 TOBE domain EML540_18160 PF17912 MalK OB fold domain EML540_18160 PF00005 ABC transporter EML540_18165 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML540_18165 PF01266 FAD dependent oxidoreductase EML540_18170 PF00455 DeoR C terminal sensor domain EML540_18170 PF08220 DeoR-like helix-turn-helix domain EML540_18175 PF14824 Sirohaem biosynthesis protein central EML540_18175 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML540_18175 PF10414 Sirohaem synthase dimerisation region EML540_18180 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML540_18180 PF00384 Molybdopterin oxidoreductase EML540_18180 PF01568 Molydopterin dinucleotide binding domain EML540_18180 PF04324 BFD-like [2Fe-2S] binding domain EML540_18190 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EML540_18190 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_18190 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EML540_18190 PF04324 BFD-like [2Fe-2S] binding domain EML540_18190 PF18267 Rubredoxin NAD+ reductase C-terminal domain EML540_18195 PF00005 ABC transporter EML540_18200 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18215 PF03861 ANTAR domain EML540_18215 PF08376 Nitrate and nitrite sensing EML540_18220 PF00392 Bacterial regulatory proteins, gntR family EML540_18220 PF07729 FCD domain EML540_18225 PF01566 Natural resistance-associated macrophage protein EML540_18230 PF03746 LamB/YcsF family EML540_18235 PF07286 Protein of unknown function (DUF1445) EML540_18240 PF02626 Carboxyltransferase domain, subdomain A and B EML540_18245 PF00289 Biotin carboxylase, N-terminal domain EML540_18245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_18245 PF02785 Biotin carboxylase C-terminal domain EML540_18245 PF00364 Biotin-requiring enzyme EML540_18250 PF02806 Alpha amylase, C-terminal all-beta domain EML540_18250 PF00128 Alpha amylase, catalytic domain EML540_18255 PF09278 MerR, DNA binding EML540_18255 PF00376 MerR family regulatory protein EML540_18260 PF00593 TonB dependent receptor EML540_18260 PF07715 TonB-dependent Receptor Plug Domain EML540_18265 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18265 PF03466 LysR substrate binding domain EML540_18270 PF06772 Bacterial low temperature requirement A protein (LtrA) EML540_18285 PF11800 Replication protein C C-terminal region EML540_18285 PF03428 Replication protein C N-terminal domain EML540_18290 PF02195 ParB-like nuclease domain EML540_18290 PF07506 RepB plasmid partitioning protein EML540_18295 PF13614 AAA domain EML540_18305 PF01042 Endoribonuclease L-PSP EML540_18310 PF14031 Putative serine dehydratase domain EML540_18310 PF01168 Alanine racemase, N-terminal domain EML540_18315 PF07171 MlrC C-terminus EML540_18315 PF07364 Metallopeptidase family M81 EML540_18320 PF05962 HutD EML540_18330 PF01175 Urocanase Rossmann-like domain EML540_18330 PF17392 Urocanase C-terminal domain EML540_18330 PF17391 Urocanase N-terminal domain EML540_18340 PF00221 Aromatic amino acid lyase EML540_18345 PF01979 Amidohydrolase family EML540_18350 PF01979 Amidohydrolase family EML540_18400 PF01266 FAD dependent oxidoreductase EML540_18405 PF14031 Putative serine dehydratase domain EML540_18405 PF01168 Alanine racemase, N-terminal domain EML540_18410 PF02423 Ornithine cyclodeaminase/mu-crystallin family EML540_18415 PF00171 Aldehyde dehydrogenase family EML540_18420 PF03466 LysR substrate binding domain EML540_18420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18425 PF01266 FAD dependent oxidoreductase EML540_18430 PF05544 Proline racemase EML540_18435 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18440 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18445 PF00571 CBS domain EML540_18445 PF00005 ABC transporter EML540_18455 PF01266 FAD dependent oxidoreductase EML540_18460 PF00171 Aldehyde dehydrogenase family EML540_18465 PF00701 Dihydrodipicolinate synthetase family EML540_18480 PF07729 FCD domain EML540_18480 PF00392 Bacterial regulatory proteins, gntR family EML540_18485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_18485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_18490 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_18490 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_18495 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_18495 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_18505 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18510 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18515 PF00005 ABC transporter EML540_18515 PF03459 TOBE domain EML540_18515 PF17912 MalK OB fold domain EML540_18520 PF00920 Dehydratase family EML540_18525 PF01370 NAD dependent epimerase/dehydratase family EML540_18530 PF03737 Aldolase/RraA EML540_18540 PF03275 UDP-galactopyranose mutase EML540_18555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18555 PF03466 LysR substrate binding domain EML540_18560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_18575 PF07969 Amidohydrolase family EML540_18585 PF05977 Transmembrane secretion effector EML540_18600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18600 PF03466 LysR substrate binding domain EML540_18605 PF07690 Major Facilitator Superfamily EML540_18650 PF13673 Acetyltransferase (GNAT) domain EML540_18655 PF06968 Biotin and Thiamin Synthesis associated domain EML540_18655 PF04055 Radical SAM superfamily EML540_18660 PF00155 Aminotransferase class I and II EML540_18670 PF00202 Aminotransferase class-III EML540_18675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EML540_18675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EML540_18705 PF00491 Arginase family EML540_18715 PF13333 Integrase core domain EML540_18715 PF00665 Integrase core domain EML540_18715 PF01527 Transposase EML540_18715 PF13276 HTH-like domain EML540_18725 PF00892 EamA-like transporter family EML540_18730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_18730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_18735 PF00211 Adenylate and Guanylate cyclase catalytic domain EML540_18745 PF07756 Protein of unknown function (DUF1612) EML540_18745 PF11972 HTH DNA binding domain EML540_18750 PF00083 Sugar (and other) transporter EML540_18755 PF00512 His Kinase A (phospho-acceptor) domain EML540_18755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_18760 PF00486 Transcriptional regulatory protein, C terminal EML540_18760 PF00072 Response regulator receiver domain EML540_18765 PF08019 Phosphoethanolamine transferase EptA/EptB EML540_18765 PF00884 Sulfatase EML540_18770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_18770 PF03466 LysR substrate binding domain EML540_18775 PF00593 TonB dependent receptor EML540_18775 PF07715 TonB-dependent Receptor Plug Domain EML540_18785 PF01032 FecCD transport family EML540_18790 PF00005 ABC transporter EML540_18800 PF00034 Cytochrome c EML540_18805 PF02631 RecX family EML540_18810 PF08450 SMP-30/Gluconolactonase/LRE-like region EML540_18820 PF02653 Branched-chain amino acid transport system / permease component EML540_18825 PF00005 ABC transporter EML540_18830 PF13407 Periplasmic binding protein domain EML540_18835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_18835 PF07730 Histidine kinase EML540_18840 PF00072 Response regulator receiver domain EML540_18840 PF00196 Bacterial regulatory proteins, luxR family EML540_18850 PF07995 Glucose / Sorbosone dehydrogenase EML540_18860 PF04445 Putative SAM-dependent methyltransferase EML540_18865 PF00849 RNA pseudouridylate synthase EML540_18870 PF01205 Uncharacterized protein family UPF0029 EML540_18875 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_18875 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_18880 PF00571 CBS domain EML540_18880 PF00005 ABC transporter EML540_18885 PF00528 Binding-protein-dependent transport system inner membrane component EML540_18895 PF13426 PAS domain EML540_18895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_18895 PF00072 Response regulator receiver domain EML540_18900 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_18905 PF13807 G-rich domain on putative tyrosine kinase EML540_18905 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_18905 PF02706 Chain length determinant protein EML540_18910 PF00483 Nucleotidyl transferase EML540_18915 PF00535 Glycosyl transferase family 2 EML540_18920 PF00535 Glycosyl transferase family 2 EML540_18925 PF00535 Glycosyl transferase family 2 EML540_18935 PF00722 Glycosyl hydrolases family 16 EML540_18940 PF01757 Acyltransferase family EML540_18945 PF01943 Polysaccharide biosynthesis protein EML540_18950 PF00535 Glycosyl transferase family 2 EML540_18955 PF04230 Polysaccharide pyruvyl transferase EML540_18960 PF00535 Glycosyl transferase family 2 EML540_18965 PF11089 Exopolysaccharide production repressor EML540_18980 PF01165 Ribosomal protein S21 EML540_18985 PF01266 FAD dependent oxidoreductase EML540_19000 PF17806 Sarcosine oxidase A3 domain EML540_19000 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_19000 PF01571 Aminomethyltransferase folate-binding domain EML540_19000 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML540_19015 PF01575 MaoC like domain EML540_19020 PF00128 Alpha amylase, catalytic domain EML540_19020 PF18390 Glycogen debranching enzyme C-terminal domain EML540_19020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML540_19025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML540_19025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML540_19025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML540_19025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML540_19030 PF00534 Glycosyl transferases group 1 EML540_19030 PF08323 Starch synthase catalytic domain EML540_19035 PF00483 Nucleotidyl transferase EML540_19040 PF00128 Alpha amylase, catalytic domain EML540_19040 PF02806 Alpha amylase, C-terminal all-beta domain EML540_19040 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML540_19045 PF00343 Carbohydrate phosphorylase EML540_19055 PF01177 Asp/Glu/Hydantoin racemase EML540_19060 PF01037 Lrp/AsnC ligand binding domain EML540_19070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_19070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML540_19080 PF00107 Zinc-binding dehydrogenase EML540_19080 PF08240 Alcohol dehydrogenase GroES-like domain EML540_19090 PF00005 ABC transporter EML540_19090 PF00664 ABC transporter transmembrane region EML540_19095 PF00005 ABC transporter EML540_19095 PF00664 ABC transporter transmembrane region EML540_19100 PF01654 Cytochrome bd terminal oxidase subunit I EML540_19105 PF02322 Cytochrome bd terminal oxidase subunit II EML540_19110 PF08173 Membrane bound YbgT-like protein EML540_19130 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EML540_19130 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EML540_19135 PF02910 Fumarate reductase flavoprotein C-term EML540_19135 PF00890 FAD binding domain EML540_19140 PF02445 Quinolinate synthetase A protein EML540_19170 PF02224 Cytidylate kinase EML540_19175 PF00575 S1 RNA binding domain EML540_19205 PF00106 short chain dehydrogenase EML540_19210 PF01321 Creatinase/Prolidase N-terminal domain EML540_19210 PF00557 Metallopeptidase family M24 EML540_19215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_19220 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19225 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19225 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_19230 PF00005 ABC transporter EML540_19230 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_19235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_19235 PF00005 ABC transporter EML540_19240 PF07729 FCD domain EML540_19240 PF00392 Bacterial regulatory proteins, gntR family EML540_19245 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_19245 PF13378 Enolase C-terminal domain-like EML540_19250 PF00296 Luciferase-like monooxygenase EML540_19265 PF00005 ABC transporter EML540_19265 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_19270 PF00005 ABC transporter EML540_19275 PF02653 Branched-chain amino acid transport system / permease component EML540_19280 PF02653 Branched-chain amino acid transport system / permease component EML540_19280 PF11862 Domain of unknown function (DUF3382) EML540_19285 PF00732 GMC oxidoreductase EML540_19285 PF05199 GMC oxidoreductase EML540_19290 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML540_19290 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_19295 PF13193 AMP-binding enzyme C-terminal domain EML540_19295 PF00501 AMP-binding enzyme EML540_19320 PF01011 PQQ enzyme repeat EML540_19325 PF05974 Domain of unknown function (DUF892) EML540_19335 PF03275 UDP-galactopyranose mutase EML540_19355 PF01965 DJ-1/PfpI family EML540_19375 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EML540_19375 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EML540_19380 PF16363 GDP-mannose 4,6 dehydratase EML540_19385 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EML540_19385 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EML540_19385 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EML540_19395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_19395 PF03466 LysR substrate binding domain EML540_19400 PF00171 Aldehyde dehydrogenase family EML540_19405 PF09084 NMT1/THI5 like EML540_19410 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19415 PF00005 ABC transporter EML540_19420 PF01619 Proline dehydrogenase EML540_19420 PF00171 Aldehyde dehydrogenase family EML540_19420 PF14850 DNA-binding domain of Proline dehydrogenase EML540_19420 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EML540_19425 PF01037 Lrp/AsnC ligand binding domain EML540_19430 PF04542 Sigma-70 region 2 EML540_19430 PF08281 Sigma-70, region 4 EML540_19440 PF00072 Response regulator receiver domain EML540_19445 PF13426 PAS domain EML540_19445 PF08447 PAS fold EML540_19445 PF07536 HWE histidine kinase EML540_19450 PF13581 Histidine kinase-like ATPase domain EML540_19450 PF07536 HWE histidine kinase EML540_19450 PF13426 PAS domain EML540_19460 PF16363 GDP-mannose 4,6 dehydratase EML540_19475 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML540_19480 PF03435 Saccharopine dehydrogenase NADP binding domain EML540_19480 PF16653 Saccharopine dehydrogenase C-terminal domain EML540_19485 PF00271 Helicase conserved C-terminal domain EML540_19485 PF00270 DEAD/DEAH box helicase EML540_19490 PF00696 Amino acid kinase family EML540_19490 PF01842 ACT domain EML540_19490 PF13840 ACT domain EML540_19495 PF01590 GAF domain EML540_19495 PF05524 PEP-utilising enzyme, N-terminal EML540_19495 PF00391 PEP-utilising enzyme, mobile domain EML540_19495 PF02896 PEP-utilising enzyme, TIM barrel domain EML540_19500 PF03462 PCRF domain EML540_19500 PF00472 RF-1 domain EML540_19505 PF05175 Methyltransferase small domain EML540_19505 PF17827 PrmC N-terminal domain EML540_19515 PF07724 AAA domain (Cdc48 subfamily) EML540_19515 PF17871 AAA lid domain EML540_19515 PF02861 Clp amino terminal domain, pathogenicity island component EML540_19515 PF10431 C-terminal, D2-small domain, of ClpB protein EML540_19515 PF00004 ATPase family associated with various cellular activities (AAA) EML540_19520 PF01551 Peptidase family M23 EML540_19520 PF01464 Transglycosylase SLT domain EML540_19520 PF10145 Phage-related minor tail protein EML540_19560 PF00701 Dihydrodipicolinate synthetase family EML540_19565 PF08450 SMP-30/Gluconolactonase/LRE-like region EML540_19570 PF07729 FCD domain EML540_19570 PF00392 Bacterial regulatory proteins, gntR family EML540_19575 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_19580 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19585 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_19585 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19590 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_19590 PF00005 ABC transporter EML540_19595 PF13378 Enolase C-terminal domain-like EML540_19595 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_19620 PF03358 NADPH-dependent FMN reductase EML540_19625 PF13649 Methyltransferase domain EML540_19630 PF01161 Phosphatidylethanolamine-binding protein EML540_19640 PF00440 Bacterial regulatory proteins, tetR family EML540_19640 PF02909 Tetracyclin repressor-like, C-terminal domain EML540_19645 PF07690 Major Facilitator Superfamily EML540_19650 PF01047 MarR family EML540_19650 PF00480 ROK family EML540_19665 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19670 PF08402 TOBE domain EML540_19670 PF00005 ABC transporter EML540_19675 PF03009 Glycerophosphoryl diester phosphodiesterase family EML540_19680 PF00313 'Cold-shock' DNA-binding domain EML540_19690 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_19690 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_19705 PF00873 AcrB/AcrD/AcrF family EML540_19710 PF00106 short chain dehydrogenase EML540_19720 PF17806 Sarcosine oxidase A3 domain EML540_19720 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_19720 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML540_19720 PF01571 Aminomethyltransferase folate-binding domain EML540_19725 PF04267 Sarcosine oxidase, delta subunit family EML540_19730 PF01266 FAD dependent oxidoreductase EML540_19735 PF01965 DJ-1/PfpI family EML540_19735 PF12833 Helix-turn-helix domain EML540_19750 PF01493 GXGXG motif EML540_19755 PF01645 Conserved region in glutamate synthase EML540_19760 PF00120 Glutamine synthetase, catalytic domain EML540_19765 PF00551 Formyl transferase EML540_19770 PF07729 FCD domain EML540_19770 PF00392 Bacterial regulatory proteins, gntR family EML540_19780 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19785 PF00005 ABC transporter EML540_19790 PF00465 Iron-containing alcohol dehydrogenase EML540_19800 PF12697 Alpha/beta hydrolase family EML540_19805 PF01613 Flavin reductase like domain EML540_19810 PF00296 Luciferase-like monooxygenase EML540_19815 PF00171 Aldehyde dehydrogenase family EML540_19830 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19835 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19840 PF00005 ABC transporter EML540_19840 PF08402 TOBE domain EML540_19845 PF00171 Aldehyde dehydrogenase family EML540_19855 PF00005 ABC transporter EML540_19855 PF03459 TOBE domain EML540_19855 PF17912 MalK OB fold domain EML540_19860 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19865 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19875 PF00890 FAD binding domain EML540_19875 PF04205 FMN-binding domain EML540_19880 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML540_19880 PF00356 Bacterial regulatory proteins, lacI family EML540_19890 PF00005 ABC transporter EML540_19890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_19895 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19895 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_19900 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19905 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_19910 PF00528 Binding-protein-dependent transport system inner membrane component EML540_19915 PF00005 ABC transporter EML540_19925 PF04303 PrpF protein EML540_19930 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_19930 PF03466 LysR substrate binding domain EML540_19940 PF00155 Aminotransferase class I and II EML540_19940 PF00392 Bacterial regulatory proteins, gntR family EML540_19955 PF02567 Phenazine biosynthesis-like protein EML540_19960 PF00293 NUDIX domain EML540_19965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_19965 PF03466 LysR substrate binding domain EML540_19975 PF00364 Biotin-requiring enzyme EML540_19980 PF02785 Biotin carboxylase C-terminal domain EML540_19980 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML540_19980 PF00289 Biotin carboxylase, N-terminal domain EML540_19995 PF02626 Carboxyltransferase domain, subdomain A and B EML540_20000 PF03746 LamB/YcsF family EML540_20005 PF00155 Aminotransferase class I and II EML540_20010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20010 PF03466 LysR substrate binding domain EML540_20015 PF00106 short chain dehydrogenase EML540_20020 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20025 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20030 PF00005 ABC transporter EML540_20035 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_20040 PF03737 Aldolase/RraA EML540_20055 PF03466 LysR substrate binding domain EML540_20055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20065 PF03466 LysR substrate binding domain EML540_20065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20070 PF07690 Major Facilitator Superfamily EML540_20075 PF00296 Luciferase-like monooxygenase EML540_20080 PF00248 Aldo/keto reductase family EML540_20085 PF08501 Shikimate dehydrogenase substrate binding domain EML540_20085 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML540_20085 PF01488 Shikimate / quinate 5-dehydrogenase EML540_20090 PF00732 GMC oxidoreductase EML540_20090 PF05199 GMC oxidoreductase EML540_20095 PF12833 Helix-turn-helix domain EML540_20095 PF02311 AraC-like ligand binding domain EML540_20100 PF00924 Mechanosensitive ion channel EML540_20110 PF00072 Response regulator receiver domain EML540_20110 PF00196 Bacterial regulatory proteins, luxR family EML540_20130 PF00924 Mechanosensitive ion channel EML540_20135 PF00512 His Kinase A (phospho-acceptor) domain EML540_20135 PF13493 Domain of unknown function (DUF4118) EML540_20135 PF00989 PAS fold EML540_20135 PF08447 PAS fold EML540_20135 PF13426 PAS domain EML540_20135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_20140 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML540_20140 PF00072 Response regulator receiver domain EML540_20140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_20140 PF01627 Hpt domain EML540_20140 PF00672 HAMP domain EML540_20140 PF00512 His Kinase A (phospho-acceptor) domain EML540_20145 PF16123 Hydroxyacylglutathione hydrolase C-terminus EML540_20145 PF00753 Metallo-beta-lactamase superfamily EML540_20160 PF01266 FAD dependent oxidoreductase EML540_20170 PF17806 Sarcosine oxidase A3 domain EML540_20170 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_20170 PF01571 Aminomethyltransferase folate-binding domain EML540_20170 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML540_20180 PF00464 Serine hydroxymethyltransferase EML540_20185 PF00551 Formyl transferase EML540_20195 PF00440 Bacterial regulatory proteins, tetR family EML540_20200 PF08240 Alcohol dehydrogenase GroES-like domain EML540_20200 PF00107 Zinc-binding dehydrogenase EML540_20205 PF12833 Helix-turn-helix domain EML540_20210 PF13407 Periplasmic binding protein domain EML540_20215 PF00005 ABC transporter EML540_20220 PF02653 Branched-chain amino acid transport system / permease component EML540_20225 PF00106 short chain dehydrogenase EML540_20230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML540_20230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML540_20240 PF08946 Osmosensory transporter coiled coil EML540_20240 PF00083 Sugar (and other) transporter EML540_20250 PF02563 Polysaccharide biosynthesis/export protein EML540_20265 PF06744 Type VI secretion protein IcmF C-terminal EML540_20265 PF06761 Intracellular multiplication and human macrophage-killing EML540_20265 PF14331 ImcF-related N-terminal domain EML540_20270 PF00691 OmpA family EML540_20275 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE EML540_20290 PF05947 Type VI secretion system, TssF EML540_20310 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EML540_20315 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 EML540_20325 PF10431 C-terminal, D2-small domain, of ClpB protein EML540_20325 PF17871 AAA lid domain EML540_20325 PF07724 AAA domain (Cdc48 subfamily) EML540_20325 PF00004 ATPase family associated with various cellular activities (AAA) EML540_20345 PF04717 Type VI secretion system, phage-baseplate injector EML540_20370 PF00563 EAL domain EML540_20370 PF00990 Diguanylate cyclase, GGDEF domain EML540_20370 PF08447 PAS fold EML540_20370 PF08448 PAS fold EML540_20380 PF03741 Integral membrane protein TerC family EML540_20380 PF03471 Transporter associated domain EML540_20395 PF17912 MalK OB fold domain EML540_20395 PF00005 ABC transporter EML540_20395 PF03459 TOBE domain EML540_20400 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20405 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20410 PF13416 Bacterial extracellular solute-binding protein EML540_20415 PF01261 Xylose isomerase-like TIM barrel EML540_20420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_20420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_20425 PF00356 Bacterial regulatory proteins, lacI family EML540_20440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20440 PF03466 LysR substrate binding domain EML540_20450 PF13407 Periplasmic binding protein domain EML540_20455 PF00005 ABC transporter EML540_20460 PF02653 Branched-chain amino acid transport system / permease component EML540_20465 PF02653 Branched-chain amino acid transport system / permease component EML540_20470 PF00356 Bacterial regulatory proteins, lacI family EML540_20480 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_20480 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_20500 PF00034 Cytochrome c EML540_20515 PF00394 Multicopper oxidase EML540_20515 PF07732 Multicopper oxidase EML540_20535 PF00092 von Willebrand factor type A domain EML540_20540 PF08406 CbbQ/NirQ/NorQ C-terminal EML540_20540 PF07728 AAA domain (dynein-related subfamily) EML540_20545 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML540_20550 PF00034 Cytochrome c EML540_20560 PF00510 Cytochrome c oxidase subunit III EML540_20575 PF02441 Flavoprotein EML540_20580 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EML540_20585 PF04343 Protein of unknown function, DUF488 EML540_20595 PF01136 Peptidase family U32 EML540_20625 PF00005 ABC transporter EML540_20635 PF06796 Periplasmic nitrate reductase protein NapE EML540_20650 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML540_20650 PF00384 Molybdopterin oxidoreductase EML540_20650 PF01568 Molydopterin dinucleotide binding domain EML540_20655 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) EML540_20660 PF03264 NapC/NirT cytochrome c family, N-terminal region EML540_20665 PF03466 LysR substrate binding domain EML540_20665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20675 PF00664 ABC transporter transmembrane region EML540_20675 PF00005 ABC transporter EML540_20680 PF00529 HlyD membrane-fusion protein of T1SS EML540_20680 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_20690 PF17837 4'-phosphopantetheinyl transferase N-terminal domain EML540_20690 PF01648 4'-phosphopantetheinyl transferase superfamily EML540_20695 PF02770 Acyl-CoA dehydrogenase, middle domain EML540_20695 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_20695 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML540_20700 PF03466 LysR substrate binding domain EML540_20700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20705 PF00356 Bacterial regulatory proteins, lacI family EML540_20715 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20725 PF08402 TOBE domain EML540_20725 PF00005 ABC transporter EML540_20735 PF13382 Adenine deaminase C-terminal domain EML540_20735 PF01979 Amidohydrolase family EML540_20740 PF03796 DnaB-like helicase C terminal domain EML540_20745 PF01546 Peptidase family M20/M25/M40 EML540_20745 PF07687 Peptidase dimerisation domain EML540_20755 PF01244 Membrane dipeptidase (Peptidase family M19) EML540_20760 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_20765 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20770 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_20770 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_20775 PF00005 ABC transporter EML540_20780 PF00005 ABC transporter EML540_20780 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_20790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_20790 PF03466 LysR substrate binding domain EML540_20795 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_20800 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20805 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20805 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_20810 PF01425 Amidase EML540_20815 PF01965 DJ-1/PfpI family EML540_20825 PF07687 Peptidase dimerisation domain EML540_20825 PF01546 Peptidase family M20/M25/M40 EML540_20830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_20830 PF00005 ABC transporter EML540_20835 PF04198 Putative sugar-binding domain EML540_20845 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20850 PF00528 Binding-protein-dependent transport system inner membrane component EML540_20855 PF08402 TOBE domain EML540_20855 PF00005 ABC transporter EML540_20860 PF08125 Mannitol dehydrogenase C-terminal domain EML540_20860 PF01232 Mannitol dehydrogenase Rossmann domain EML540_20865 PF13419 Haloacid dehalogenase-like hydrolase EML540_20870 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML540_20870 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML540_20875 PF01418 Helix-turn-helix domain, rpiR family EML540_20875 PF01380 SIS domain EML540_20885 PF10576 Iron-sulfur binding domain of endonuclease III EML540_20885 PF00730 HhH-GPD superfamily base excision DNA repair protein EML540_20885 PF00633 Helix-hairpin-helix motif EML540_20895 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML540_20895 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML540_20910 PF13936 Helix-turn-helix domain EML540_20910 PF04198 Putative sugar-binding domain EML540_20915 PF00923 Transaldolase/Fructose-6-phosphate aldolase EML540_20920 PF09339 IclR helix-turn-helix domain EML540_20920 PF01614 Bacterial transcriptional regulator EML540_20935 PF00950 ABC 3 transport family EML540_20940 PF00950 ABC 3 transport family EML540_20945 PF00005 ABC transporter EML540_20950 PF01297 Zinc-uptake complex component A periplasmic EML540_20960 PF01336 OB-fold nucleic acid binding domain EML540_20960 PF00152 tRNA synthetases class II (D, K and N) EML540_20965 PF00749 tRNA synthetases class I (E and Q), catalytic domain EML540_20970 PF02080 TrkA-C domain EML540_20970 PF03600 Citrate transporter EML540_20975 PF03741 Integral membrane protein TerC family EML540_20975 PF03471 Transporter associated domain EML540_20980 PF00440 Bacterial regulatory proteins, tetR family EML540_20985 PF13533 Biotin-lipoyl like EML540_20990 PF07690 Major Facilitator Superfamily EML540_21000 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML540_21000 PF00356 Bacterial regulatory proteins, lacI family EML540_21005 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML540_21005 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML540_21010 PF01261 Xylose isomerase-like TIM barrel EML540_21015 PF00232 Glycosyl hydrolase family 1 EML540_21020 PF00881 Nitroreductase family EML540_21025 PF09383 NIL domain EML540_21025 PF00005 ABC transporter EML540_21030 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21035 PF03180 NLPA lipoprotein EML540_21040 PF13188 PAS domain EML540_21040 PF03707 Bacterial signalling protein N terminal repeat EML540_21040 PF00563 EAL domain EML540_21040 PF00990 Diguanylate cyclase, GGDEF domain EML540_21045 PF00581 Rhodanese-like domain EML540_21045 PF17773 UPF0176 acylphosphatase like domain EML540_21055 PF01928 CYTH domain EML540_21060 PF01081 KDPG and KHG aldolase EML540_21080 PF03824 High-affinity nickel-transport protein EML540_21100 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML540_21100 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML540_21105 PF02633 Creatinine amidohydrolase EML540_21110 PF01047 MarR family EML540_21115 PF00356 Bacterial regulatory proteins, lacI family EML540_21120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_21120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_21125 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_21125 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_21130 PF04962 KduI/IolB family EML540_21135 PF01261 Xylose isomerase-like TIM barrel EML540_21140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML540_21140 PF00205 Thiamine pyrophosphate enzyme, central domain EML540_21140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML540_21145 PF00294 pfkB family carbohydrate kinase EML540_21155 PF00005 ABC transporter EML540_21160 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_21160 PF00005 ABC transporter EML540_21175 PF13458 Periplasmic binding protein EML540_21185 PF12833 Helix-turn-helix domain EML540_21195 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_21195 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21200 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21205 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_21210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_21210 PF00005 ABC transporter EML540_21220 PF01261 Xylose isomerase-like TIM barrel EML540_21220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML540_21230 PF01220 Dehydroquinase class II EML540_21235 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML540_21235 PF08501 Shikimate dehydrogenase substrate binding domain EML540_21240 PF00005 ABC transporter EML540_21245 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_21250 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_21255 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21260 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21265 PF00206 Lyase EML540_21265 PF10397 Adenylosuccinate lyase C-terminus EML540_21270 PF00775 Dioxygenase EML540_21275 PF00775 Dioxygenase EML540_21275 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EML540_21280 PF02627 Carboxymuconolactone decarboxylase family EML540_21285 PF00561 alpha/beta hydrolase fold EML540_21290 PF03466 LysR substrate binding domain EML540_21290 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_21295 PF01494 FAD binding domain EML540_21305 PF01614 Bacterial transcriptional regulator EML540_21305 PF09339 IclR helix-turn-helix domain EML540_21310 PF01144 Coenzyme A transferase EML540_21315 PF01144 Coenzyme A transferase EML540_21320 PF00108 Thiolase, N-terminal domain EML540_21320 PF02803 Thiolase, C-terminal domain EML540_21325 PF00356 Bacterial regulatory proteins, lacI family EML540_21330 PF13407 Periplasmic binding protein domain EML540_21335 PF13407 Periplasmic binding protein domain EML540_21340 PF01261 Xylose isomerase-like TIM barrel EML540_21345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_21345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_21355 PF00356 Bacterial regulatory proteins, lacI family EML540_21360 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21365 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21370 PF00005 ABC transporter EML540_21370 PF17912 MalK OB fold domain EML540_21380 PF07470 Glycosyl Hydrolase Family 88 EML540_21400 PF00480 ROK family EML540_21400 PF01325 Iron dependent repressor, N-terminal DNA binding domain EML540_21410 PF00005 ABC transporter EML540_21410 PF17912 MalK OB fold domain EML540_21415 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21420 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21425 PF03009 Glycerophosphoryl diester phosphodiesterase family EML540_21430 PF00459 Inositol monophosphatase family EML540_21435 PF00106 short chain dehydrogenase EML540_21440 PF12852 Cupin EML540_21440 PF12833 Helix-turn-helix domain EML540_21445 PF00480 ROK family EML540_21455 PF00005 ABC transporter EML540_21455 PF08402 TOBE domain EML540_21460 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21475 PF11953 Domain of unknown function (DUF3470) EML540_21475 PF00037 4Fe-4S binding domain EML540_21480 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML540_21480 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML540_21510 PF00248 Aldo/keto reductase family EML540_21515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_21515 PF03466 LysR substrate binding domain EML540_21525 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML540_21545 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21550 PF00005 ABC transporter EML540_21560 PF00664 ABC transporter transmembrane region EML540_21560 PF00005 ABC transporter EML540_21590 PF01757 Acyltransferase family EML540_21595 PF00535 Glycosyl transferase family 2 EML540_21605 PF01370 NAD dependent epimerase/dehydratase family EML540_21610 PF00535 Glycosyl transferase family 2 EML540_21620 PF00483 Nucleotidyl transferase EML540_21625 PF04321 RmlD substrate binding domain EML540_21630 PF16363 GDP-mannose 4,6 dehydratase EML540_21635 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EML540_21640 PF13361 UvrD-like helicase C-terminal domain EML540_21640 PF00580 UvrD/REP helicase N-terminal domain EML540_21645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_21645 PF00005 ABC transporter EML540_21650 PF00005 ABC transporter EML540_21650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_21655 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_21655 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21660 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21665 PF00392 Bacterial regulatory proteins, gntR family EML540_21665 PF07729 FCD domain EML540_21670 PF03786 D-mannonate dehydratase (UxuA) EML540_21675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_21685 PF00563 EAL domain EML540_21685 PF00990 Diguanylate cyclase, GGDEF domain EML540_21685 PF03707 Bacterial signalling protein N terminal repeat EML540_21685 PF13188 PAS domain EML540_21700 PF02735 Ku70/Ku80 beta-barrel domain EML540_21715 PF01865 Protein of unknown function DUF47 EML540_21725 PF00873 AcrB/AcrD/AcrF family EML540_21730 PF13533 Biotin-lipoyl like EML540_21735 PF00072 Response regulator receiver domain EML540_21735 PF00486 Transcriptional regulatory protein, C terminal EML540_21740 PF00672 HAMP domain EML540_21740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_21740 PF00512 His Kinase A (phospho-acceptor) domain EML540_21750 PF03466 LysR substrate binding domain EML540_21750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_21755 PF00141 Peroxidase EML540_21765 PF12833 Helix-turn-helix domain EML540_21765 PF10114 Sensory domain found in PocR EML540_21770 PF00171 Aldehyde dehydrogenase family EML540_21775 PF03466 LysR substrate binding domain EML540_21775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_21780 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML540_21785 PF00884 Sulfatase EML540_21785 PF12411 Choline sulfatase enzyme C terminal EML540_21790 PF00294 pfkB family carbohydrate kinase EML540_21795 PF00005 ABC transporter EML540_21795 PF08402 TOBE domain EML540_21800 PF14698 Argininosuccinate lyase C-terminal EML540_21800 PF00206 Lyase EML540_21805 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21810 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21815 PF13416 Bacterial extracellular solute-binding protein EML540_21820 PF00480 ROK family EML540_21845 PF11975 Family 4 glycosyl hydrolase C-terminal domain EML540_21845 PF02056 Family 4 glycosyl hydrolase EML540_21850 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_21855 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21860 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21860 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_21865 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_21865 PF00005 ABC transporter EML540_21870 PF02056 Family 4 glycosyl hydrolase EML540_21870 PF11975 Family 4 glycosyl hydrolase C-terminal domain EML540_21875 PF13533 Biotin-lipoyl like EML540_21880 PF00005 ABC transporter EML540_21900 PF00072 Response regulator receiver domain EML540_21905 PF12327 FtsZ family, C-terminal domain EML540_21905 PF00091 Tubulin/FtsZ family, GTPase domain EML540_21910 PF00392 Bacterial regulatory proteins, gntR family EML540_21910 PF07729 FCD domain EML540_21915 PF00701 Dihydrodipicolinate synthetase family EML540_21920 PF02615 Malate/L-lactate dehydrogenase EML540_21930 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21935 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21940 PF00005 ABC transporter EML540_21945 PF01266 FAD dependent oxidoreductase EML540_21955 PF05544 Proline racemase EML540_21960 PF00356 Bacterial regulatory proteins, lacI family EML540_21970 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_21975 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21980 PF00528 Binding-protein-dependent transport system inner membrane component EML540_21985 PF00005 ABC transporter EML540_21990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_21990 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_21995 PF03707 Bacterial signalling protein N terminal repeat EML540_21995 PF00990 Diguanylate cyclase, GGDEF domain EML540_21995 PF00563 EAL domain EML540_22000 PF02530 Porin subfamily EML540_22005 PF01979 Amidohydrolase family EML540_22010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_22015 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22020 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22020 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_22025 PF01979 Amidohydrolase family EML540_22030 PF01979 Amidohydrolase family EML540_22035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_22035 PF00005 ABC transporter EML540_22040 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_22040 PF00005 ABC transporter EML540_22045 PF00392 Bacterial regulatory proteins, gntR family EML540_22045 PF07729 FCD domain EML540_22050 PF01613 Flavin reductase like domain EML540_22055 PF01177 Asp/Glu/Hydantoin racemase EML540_22060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_22060 PF03466 LysR substrate binding domain EML540_22070 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EML540_22070 PF00037 4Fe-4S binding domain EML540_22070 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EML540_22075 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML540_22075 PF00384 Molybdopterin oxidoreductase EML540_22075 PF01568 Molydopterin dinucleotide binding domain EML540_22075 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EML540_22075 PF00037 4Fe-4S binding domain EML540_22085 PF07690 Major Facilitator Superfamily EML540_22090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_22095 PF00072 Response regulator receiver domain EML540_22095 PF00486 Transcriptional regulatory protein, C terminal EML540_22115 PF05532 CsbD-like EML540_22120 PF00072 Response regulator receiver domain EML540_22120 PF00196 Bacterial regulatory proteins, luxR family EML540_22125 PF07729 FCD domain EML540_22125 PF00392 Bacterial regulatory proteins, gntR family EML540_22130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_22135 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22140 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22140 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_22150 PF00005 ABC transporter EML540_22150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_22155 PF05532 CsbD-like EML540_22165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML540_22165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML540_22170 PF03401 Tripartite tricarboxylate transporter family receptor EML540_22175 PF00664 ABC transporter transmembrane region EML540_22175 PF00005 ABC transporter EML540_22180 PF00005 ABC transporter EML540_22190 PF00577 Outer membrane usher protein EML540_22190 PF13954 PapC N-terminal domain EML540_22190 PF13953 PapC C-terminal domain EML540_22205 PF11791 Aconitate B N-terminal domain EML540_22205 PF00330 Aconitase family (aconitate hydratase) EML540_22205 PF06434 Aconitate hydratase 2 N-terminus EML540_22210 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_22210 PF00672 HAMP domain EML540_22220 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_22230 PF00107 Zinc-binding dehydrogenase EML540_22230 PF08240 Alcohol dehydrogenase GroES-like domain EML540_22235 PF01590 GAF domain EML540_22235 PF00158 Sigma-54 interaction domain EML540_22235 PF02954 Bacterial regulatory protein, Fis family EML540_22245 PF00356 Bacterial regulatory proteins, lacI family EML540_22255 PF00005 ABC transporter EML540_22260 PF02653 Branched-chain amino acid transport system / permease component EML540_22265 PF02653 Branched-chain amino acid transport system / permease component EML540_22270 PF01261 Xylose isomerase-like TIM barrel EML540_22275 PF00485 Phosphoribulokinase / Uridine kinase family EML540_22280 PF01261 Xylose isomerase-like TIM barrel EML540_22290 PF00005 ABC transporter EML540_22295 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22300 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22305 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_22310 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EML540_22315 PF00557 Metallopeptidase family M24 EML540_22315 PF01321 Creatinase/Prolidase N-terminal domain EML540_22320 PF02423 Ornithine cyclodeaminase/mu-crystallin family EML540_22325 PF00291 Pyridoxal-phosphate dependent enzyme EML540_22330 PF00392 Bacterial regulatory proteins, gntR family EML540_22330 PF00155 Aminotransferase class I and II EML540_22335 PF00202 Aminotransferase class-III EML540_22340 PF00171 Aldehyde dehydrogenase family EML540_22345 PF01037 Lrp/AsnC ligand binding domain EML540_22355 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EML540_22375 PF04199 Putative cyclase EML540_22380 PF01494 FAD binding domain EML540_22385 PF00190 Cupin EML540_22395 PF00196 Bacterial regulatory proteins, luxR family EML540_22395 PF00072 Response regulator receiver domain EML540_22400 PF00196 Bacterial regulatory proteins, luxR family EML540_22400 PF00072 Response regulator receiver domain EML540_22405 PF13426 PAS domain EML540_22405 PF08448 PAS fold EML540_22405 PF00512 His Kinase A (phospho-acceptor) domain EML540_22405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_22405 PF00072 Response regulator receiver domain EML540_22410 PF00384 Molybdopterin oxidoreductase EML540_22415 PF00210 Ferritin-like domain EML540_22420 PF00561 alpha/beta hydrolase fold EML540_22435 PF13426 PAS domain EML540_22435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_22435 PF00072 Response regulator receiver domain EML540_22440 PF00486 Transcriptional regulatory protein, C terminal EML540_22440 PF00072 Response regulator receiver domain EML540_22455 PF00528 Binding-protein-dependent transport system inner membrane component EML540_22460 PF08402 TOBE domain EML540_22460 PF00005 ABC transporter EML540_22465 PF00459 Inositol monophosphatase family EML540_22475 PF16363 GDP-mannose 4,6 dehydratase EML540_22480 PF01370 NAD dependent epimerase/dehydratase family EML540_22505 PF00072 Response regulator receiver domain EML540_22505 PF00196 Bacterial regulatory proteins, luxR family EML540_22510 PF02585 GlcNAc-PI de-N-acetylase EML540_22515 PF00483 Nucleotidyl transferase EML540_22520 PF08484 C-methyltransferase C-terminal domain EML540_22520 PF08421 Putative zinc binding domain EML540_22525 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EML540_22530 PF16221 winged helix-turn-helix EML540_22530 PF09940 Domain of unknown function (DUF2172) EML540_22530 PF16254 Domain of unknown function (DUF4910) EML540_22535 PF16363 GDP-mannose 4,6 dehydratase EML540_22540 PF00202 Aminotransferase class-III EML540_22545 PF00196 Bacterial regulatory proteins, luxR family EML540_22545 PF00072 Response regulator receiver domain EML540_22550 PF00196 Bacterial regulatory proteins, luxR family EML540_22550 PF00072 Response regulator receiver domain EML540_22570 PF13439 Glycosyltransferase Family 4 EML540_22570 PF00534 Glycosyl transferases group 1 EML540_22580 PF00953 Glycosyl transferase family 4 EML540_22600 PF00534 Glycosyl transferases group 1 EML540_22600 PF13439 Glycosyltransferase Family 4 EML540_22605 PF13439 Glycosyltransferase Family 4 EML540_22605 PF00534 Glycosyl transferases group 1 EML540_22615 PF01037 Lrp/AsnC ligand binding domain EML540_22640 PF13193 AMP-binding enzyme C-terminal domain EML540_22640 PF00501 AMP-binding enzyme EML540_22650 PF01614 Bacterial transcriptional regulator EML540_22650 PF09339 IclR helix-turn-helix domain EML540_22660 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML540_22660 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_22665 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_22680 PF14659 Phage integrase, N-terminal SAM-like domain EML540_22680 PF13356 Arm DNA-binding domain EML540_22680 PF00589 Phage integrase family EML540_22695 PF09137 Glucodextranase, domain N EML540_22695 PF00723 Glycosyl hydrolases family 15 EML540_22700 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML540_22700 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EML540_22705 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EML540_22705 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EML540_22730 PF08220 DeoR-like helix-turn-helix domain EML540_22730 PF00455 DeoR C terminal sensor domain EML540_22735 PF13407 Periplasmic binding protein domain EML540_22740 PF00005 ABC transporter EML540_22745 PF02653 Branched-chain amino acid transport system / permease component EML540_22750 PF02653 Branched-chain amino acid transport system / permease component EML540_22760 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EML540_22760 PF00294 pfkB family carbohydrate kinase EML540_22765 PF01791 DeoC/LacD family aldolase EML540_22770 PF00171 Aldehyde dehydrogenase family EML540_22795 PF03389 MobA/MobL family EML540_22795 PF01443 Viral (Superfamily 1) RNA helicase EML540_22795 PF17841 BID domain of Bartonella effector protein (Bep) EML540_22810 PF02534 Type IV secretory system Conjugative DNA transfer EML540_22830 PF01695 IstB-like ATP binding protein EML540_22845 PF01047 MarR family EML540_22865 PF00248 Aldo/keto reductase family EML540_22875 PF00107 Zinc-binding dehydrogenase EML540_22875 PF08240 Alcohol dehydrogenase GroES-like domain EML540_22880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_22880 PF03466 LysR substrate binding domain EML540_22885 PF00440 Bacterial regulatory proteins, tetR family EML540_22900 PF00248 Aldo/keto reductase family EML540_22920 PF07883 Cupin domain EML540_22920 PF12833 Helix-turn-helix domain EML540_22980 PF00665 Integrase core domain EML540_22985 PF13302 Acetyltransferase (GNAT) domain EML540_23000 PF13614 AAA domain EML540_23000 PF00376 MerR family regulatory protein EML540_23005 PF02195 ParB-like nuclease domain EML540_23005 PF07506 RepB plasmid partitioning protein EML540_23010 PF11800 Replication protein C C-terminal region EML540_23010 PF03428 Replication protein C N-terminal domain EML540_23020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_23020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_23025 PF00005 ABC transporter EML540_23030 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_23035 PF00356 Bacterial regulatory proteins, lacI family EML540_23080 PF07756 Protein of unknown function (DUF1612) EML540_23080 PF11972 HTH DNA binding domain EML540_23115 PF02463 RecF/RecN/SMC N terminal domain EML540_23120 PF00570 HRDC domain EML540_23120 PF13361 UvrD-like helicase C-terminal domain EML540_23180 PF02661 Fic/DOC family EML540_23180 PF13784 Fic/DOC family N-terminal EML540_23190 PF17762 HTH domain found in ParB protein EML540_23190 PF02195 ParB-like nuclease domain EML540_23240 PF02735 Ku70/Ku80 beta-barrel domain EML540_23245 PF02735 Ku70/Ku80 beta-barrel domain EML540_23250 PF01068 ATP dependent DNA ligase domain EML540_23250 PF04679 ATP dependent DNA ligase C terminal region EML540_23250 PF13298 DNA polymerase Ligase (LigD) EML540_23255 PF00011 Hsp20/alpha crystallin family EML540_23270 PF01068 ATP dependent DNA ligase domain EML540_23270 PF13298 DNA polymerase Ligase (LigD) EML540_23270 PF04679 ATP dependent DNA ligase C terminal region EML540_23285 PF13416 Bacterial extracellular solute-binding protein EML540_23290 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23295 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23305 PF08402 TOBE domain EML540_23305 PF00005 ABC transporter EML540_23310 PF01380 SIS domain EML540_23310 PF01418 Helix-turn-helix domain, rpiR family EML540_23315 PF01047 MarR family EML540_23320 PF00561 alpha/beta hydrolase fold EML540_23330 PF00701 Dihydrodipicolinate synthetase family EML540_23335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_23335 PF00005 ABC transporter EML540_23340 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23340 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_23345 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_23360 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EML540_23365 PF00465 Iron-containing alcohol dehydrogenase EML540_23370 PF00392 Bacterial regulatory proteins, gntR family EML540_23370 PF07729 FCD domain EML540_23375 PF17042 Nucleotide-binding C-terminal domain EML540_23375 PF07005 Sugar-binding N-terminal domain EML540_23385 PF00356 Bacterial regulatory proteins, lacI family EML540_23395 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23400 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23410 PF00005 ABC transporter EML540_23410 PF17912 MalK OB fold domain EML540_23415 PF03466 LysR substrate binding domain EML540_23415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23425 PF06745 KaiC EML540_23430 PF13581 Histidine kinase-like ATPase domain EML540_23430 PF13426 PAS domain EML540_23430 PF07536 HWE histidine kinase EML540_23440 PF07238 PilZ domain EML540_23440 PF03552 Cellulose synthase EML540_23440 PF00535 Glycosyl transferase family 2 EML540_23470 PF04679 ATP dependent DNA ligase C terminal region EML540_23470 PF01068 ATP dependent DNA ligase domain EML540_23470 PF13298 DNA polymerase Ligase (LigD) EML540_23485 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML540_23485 PF14579 Helix-hairpin-helix motif EML540_23485 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML540_23485 PF02811 PHP domain EML540_23505 PF05284 Protein of unknown function (DUF736) EML540_23520 PF05406 WGR domain EML540_23525 PF02534 Type IV secretory system Conjugative DNA transfer EML540_23540 PF17841 BID domain of Bartonella effector protein (Bep) EML540_23540 PF03389 MobA/MobL family EML540_23540 PF01443 Viral (Superfamily 1) RNA helicase EML540_23575 PF00155 Aminotransferase class I and II EML540_23580 PF00486 Transcriptional regulatory protein, C terminal EML540_23580 PF00072 Response regulator receiver domain EML540_23590 PF00072 Response regulator receiver domain EML540_23590 PF00486 Transcriptional regulatory protein, C terminal EML540_23600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML540_23600 PF00205 Thiamine pyrophosphate enzyme, central domain EML540_23600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML540_23605 PF00202 Aminotransferase class-III EML540_23615 PF08402 TOBE domain EML540_23615 PF00005 ABC transporter EML540_23620 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23625 PF00528 Binding-protein-dependent transport system inner membrane component EML540_23635 PF00005 ABC transporter EML540_23650 PF09339 IclR helix-turn-helix domain EML540_23650 PF01614 Bacterial transcriptional regulator EML540_23655 PF00171 Aldehyde dehydrogenase family EML540_23660 PF00465 Iron-containing alcohol dehydrogenase EML540_23665 PF00753 Metallo-beta-lactamase superfamily EML540_23695 PF02308 MgtC family EML540_23725 PF01638 HxlR-like helix-turn-helix EML540_23765 PF04956 TrbC/VIRB2 family EML540_23770 PF05101 Type IV secretory pathway, VirB3-like protein EML540_23775 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML540_23780 PF07996 Type IV secretion system proteins EML540_23790 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML540_23800 PF04335 VirB8 protein EML540_23805 PF03524 Conjugal transfer protein EML540_23810 PF03743 Bacterial conjugation TrbI-like protein EML540_23815 PF00437 Type II/IV secretion system protein EML540_23830 PF00486 Transcriptional regulatory protein, C terminal EML540_23830 PF00072 Response regulator receiver domain EML540_23835 PF00989 PAS fold EML540_23835 PF11808 Phosphate regulon sensor protein PhoR EML540_23835 PF00512 His Kinase A (phospho-acceptor) domain EML540_23835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_23840 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML540_23845 PF00005 ABC transporter EML540_23845 PF12704 MacB-like periplasmic core domain EML540_23845 PF02687 FtsX-like permease family EML540_23860 PF08240 Alcohol dehydrogenase GroES-like domain EML540_23860 PF00107 Zinc-binding dehydrogenase EML540_23870 PF03466 LysR substrate binding domain EML540_23870 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23880 PF03466 LysR substrate binding domain EML540_23885 PF00107 Zinc-binding dehydrogenase EML540_23885 PF08240 Alcohol dehydrogenase GroES-like domain EML540_23895 PF00561 alpha/beta hydrolase fold EML540_23900 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_23900 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_23905 PF00326 Prolyl oligopeptidase family EML540_23910 PF07739 TipAS antibiotic-recognition domain EML540_23910 PF13411 MerR HTH family regulatory protein EML540_23915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23915 PF03466 LysR substrate binding domain EML540_23920 PF17969 L,D-transpeptidase C-terminal domain EML540_23920 PF03734 L,D-transpeptidase catalytic domain EML540_23925 PF03466 LysR substrate binding domain EML540_23925 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23930 PF00248 Aldo/keto reductase family EML540_23935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_23935 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_23945 PF02678 Pirin EML540_23945 PF05726 Pirin C-terminal cupin domain EML540_23950 PF00107 Zinc-binding dehydrogenase EML540_23950 PF08240 Alcohol dehydrogenase GroES-like domain EML540_23960 PF00171 Aldehyde dehydrogenase family EML540_23970 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23970 PF03466 LysR substrate binding domain EML540_23980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_23980 PF03466 LysR substrate binding domain EML540_23995 PF01047 MarR family EML540_24015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24015 PF03466 LysR substrate binding domain EML540_24020 PF00005 ABC transporter EML540_24020 PF00571 CBS domain EML540_24025 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24030 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML540_24035 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_24055 PF00561 alpha/beta hydrolase fold EML540_24060 PF00296 Luciferase-like monooxygenase EML540_24065 PF00171 Aldehyde dehydrogenase family EML540_24070 PF01613 Flavin reductase like domain EML540_24085 PF01042 Endoribonuclease L-PSP EML540_24095 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24100 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24105 PF00005 ABC transporter EML540_24110 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_24115 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EML540_24120 PF00356 Bacterial regulatory proteins, lacI family EML540_24125 PF00107 Zinc-binding dehydrogenase EML540_24125 PF08240 Alcohol dehydrogenase GroES-like domain EML540_24130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24130 PF03466 LysR substrate binding domain EML540_24135 PF03576 Peptidase family S58 EML540_24140 PF08220 DeoR-like helix-turn-helix domain EML540_24140 PF00455 DeoR C terminal sensor domain EML540_24150 PF00857 Isochorismatase family EML540_24155 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24160 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24165 PF00005 ABC transporter EML540_24165 PF08402 TOBE domain EML540_24180 PF00202 Aminotransferase class-III EML540_24190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_24195 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24200 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_24200 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24205 PF00005 ABC transporter EML540_24205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_24210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_24210 PF00005 ABC transporter EML540_24220 PF03466 LysR substrate binding domain EML540_24220 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24225 PF00144 Beta-lactamase EML540_24230 PF07519 Tannase and feruloyl esterase EML540_24235 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24240 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24250 PF17200 Single Cache domain 2 EML540_24250 PF07730 Histidine kinase EML540_24255 PF00196 Bacterial regulatory proteins, luxR family EML540_24255 PF00072 Response regulator receiver domain EML540_24260 PF03480 Bacterial extracellular solute-binding protein, family 7 EML540_24265 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML540_24275 PF08279 HTH domain EML540_24275 PF13280 WYL domain EML540_24280 PF00043 Glutathione S-transferase, C-terminal domain EML540_24280 PF13417 Glutathione S-transferase, N-terminal domain EML540_24285 PF01047 MarR family EML540_24310 PF05974 Domain of unknown function (DUF892) EML540_24340 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML540_24340 PF00128 Alpha amylase, catalytic domain EML540_24340 PF11941 Domain of unknown function (DUF3459) EML540_24345 PF08323 Starch synthase catalytic domain EML540_24345 PF00534 Glycosyl transferases group 1 EML540_24360 PF00440 Bacterial regulatory proteins, tetR family EML540_24360 PF18665 Tetracyclin repressor-like, C-terminal domain EML540_24365 PF01488 Shikimate / quinate 5-dehydrogenase EML540_24365 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain EML540_24365 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain EML540_24370 PF08360 QacR-like protein, C-terminal region EML540_24370 PF00440 Bacterial regulatory proteins, tetR family EML540_24385 PF00440 Bacterial regulatory proteins, tetR family EML540_24390 PF00561 alpha/beta hydrolase fold EML540_24395 PF00561 alpha/beta hydrolase fold EML540_24420 PF00202 Aminotransferase class-III EML540_24425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24425 PF03466 LysR substrate binding domain EML540_24435 PF00285 Citrate synthase, C-terminal domain EML540_24440 PF00285 Citrate synthase, C-terminal domain EML540_24460 PF07715 TonB-dependent Receptor Plug Domain EML540_24460 PF00593 TonB dependent receptor EML540_24465 PF01497 Periplasmic binding protein EML540_24475 PF01032 FecCD transport family EML540_24480 PF01032 FecCD transport family EML540_24485 PF00005 ABC transporter EML540_24505 PF03358 NADPH-dependent FMN reductase EML540_24515 PF00107 Zinc-binding dehydrogenase EML540_24515 PF08240 Alcohol dehydrogenase GroES-like domain EML540_24520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24520 PF03466 LysR substrate binding domain EML540_24525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24525 PF03466 LysR substrate binding domain EML540_24530 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_24530 PF01842 ACT domain EML540_24530 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_24535 PF03737 Aldolase/RraA EML540_24550 PF01970 Tripartite tricarboxylate transporter TctA family EML540_24555 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_24555 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_24560 PF13660 Domain of unknown function (DUF4147) EML540_24560 PF05161 MOFRL family EML540_24565 PF01070 FMN-dependent dehydrogenase EML540_24580 PF12833 Helix-turn-helix domain EML540_24580 PF02311 AraC-like ligand binding domain EML540_24585 PF00892 EamA-like transporter family EML540_24590 PF01965 DJ-1/PfpI family EML540_24590 PF12833 Helix-turn-helix domain EML540_24595 PF05853 beta-keto acid cleavage enzyme EML540_24600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_24605 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EML540_24605 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EML540_24610 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24615 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24615 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_24620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_24620 PF00005 ABC transporter EML540_24625 PF07859 alpha/beta hydrolase fold EML540_24635 PF12728 Helix-turn-helix domain EML540_24635 PF02661 Fic/DOC family EML540_24645 PF00665 Integrase core domain EML540_24645 PF01527 Transposase EML540_24645 PF13276 HTH-like domain EML540_24645 PF13333 Integrase core domain EML540_24650 PF12951 Passenger-associated-transport-repeat EML540_24665 PF01810 LysE type translocator EML540_24670 PF07411 Domain of unknown function (DUF1508) EML540_24675 PF00230 Major intrinsic protein EML540_24710 PF05717 IS66 Orf2 like protein EML540_24725 PF00990 Diguanylate cyclase, GGDEF domain EML540_24735 PF13581 Histidine kinase-like ATPase domain EML540_24735 PF07536 HWE histidine kinase EML540_24735 PF13426 PAS domain EML540_24750 PF00072 Response regulator receiver domain EML540_24760 PF13302 Acetyltransferase (GNAT) domain EML540_24765 PF00873 AcrB/AcrD/AcrF family EML540_24775 PF00440 Bacterial regulatory proteins, tetR family EML540_24785 PF13784 Fic/DOC family N-terminal EML540_24785 PF02661 Fic/DOC family EML540_24790 PF00440 Bacterial regulatory proteins, tetR family EML540_24800 PF00561 alpha/beta hydrolase fold EML540_24805 PF12833 Helix-turn-helix domain EML540_24805 PF01965 DJ-1/PfpI family EML540_24815 PF03466 LysR substrate binding domain EML540_24815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24820 PF00356 Bacterial regulatory proteins, lacI family EML540_24825 PF00701 Dihydrodipicolinate synthetase family EML540_24830 PF07690 Major Facilitator Superfamily EML540_24840 PF00701 Dihydrodipicolinate synthetase family EML540_24845 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML540_24845 PF01842 ACT domain EML540_24845 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_24850 PF00005 ABC transporter EML540_24850 PF17912 MalK OB fold domain EML540_24855 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24860 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24880 PF07729 FCD domain EML540_24880 PF00392 Bacterial regulatory proteins, gntR family EML540_24890 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24895 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_24900 PF08402 TOBE domain EML540_24900 PF00005 ABC transporter EML540_24910 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24915 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24925 PF01613 Flavin reductase like domain EML540_24945 PF03466 LysR substrate binding domain EML540_24945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_24955 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24960 PF00528 Binding-protein-dependent transport system inner membrane component EML540_24965 PF00005 ABC transporter EML540_24965 PF08402 TOBE domain EML540_24970 PF13454 FAD-NAD(P)-binding EML540_24975 PF01323 DSBA-like thioredoxin domain EML540_24990 PF01554 MatE EML540_25010 PF00356 Bacterial regulatory proteins, lacI family EML540_25010 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML540_25015 PF01261 Xylose isomerase-like TIM barrel EML540_25020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML540_25020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML540_25025 PF01261 Xylose isomerase-like TIM barrel EML540_25030 PF01638 HxlR-like helix-turn-helix EML540_25055 PF00672 HAMP domain EML540_25055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML540_25065 PF00106 short chain dehydrogenase EML540_25070 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_25075 PF00561 alpha/beta hydrolase fold EML540_25080 PF08240 Alcohol dehydrogenase GroES-like domain EML540_25080 PF00107 Zinc-binding dehydrogenase EML540_25085 PF05406 WGR domain EML540_25090 PF00011 Hsp20/alpha crystallin family EML540_25100 PF00005 ABC transporter EML540_25105 PF12704 MacB-like periplasmic core domain EML540_25105 PF02687 FtsX-like permease family EML540_25120 PF05035 2-keto-3-deoxy-galactonokinase EML540_25125 PF00701 Dihydrodipicolinate synthetase family EML540_25130 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_25130 PF13378 Enolase C-terminal domain-like EML540_25140 PF00528 Binding-protein-dependent transport system inner membrane component EML540_25145 PF00528 Binding-protein-dependent transport system inner membrane component EML540_25150 PF00005 ABC transporter EML540_25150 PF17912 MalK OB fold domain EML540_25155 PF16363 GDP-mannose 4,6 dehydratase EML540_25160 PF01614 Bacterial transcriptional regulator EML540_25160 PF09339 IclR helix-turn-helix domain EML540_25170 PF02705 K+ potassium transporter EML540_25180 PF00817 impB/mucB/samB family EML540_25180 PF11799 impB/mucB/samB family C-terminal domain EML540_25195 PF01063 Amino-transferase class IV EML540_25200 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML540_25210 PF06418 CTP synthase N-terminus EML540_25210 PF00117 Glutamine amidotransferase class-I EML540_25215 PF00557 Metallopeptidase family M24 EML540_25215 PF01321 Creatinase/Prolidase N-terminal domain EML540_25220 PF13378 Enolase C-terminal domain-like EML540_25220 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML540_25225 PF07687 Peptidase dimerisation domain EML540_25225 PF01546 Peptidase family M20/M25/M40 EML540_25230 PF00005 ABC transporter EML540_25235 PF00528 Binding-protein-dependent transport system inner membrane component EML540_25240 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML540_25245 PF07729 FCD domain EML540_25245 PF00392 Bacterial regulatory proteins, gntR family EML540_25275 PF08281 Sigma-70, region 4 EML540_25275 PF04542 Sigma-70 region 2 EML540_25285 PF18011 C-terminal domain found in long catalases EML540_25285 PF00199 Catalase EML540_25285 PF06628 Catalase-related immune-responsive EML540_25300 PF05974 Domain of unknown function (DUF892) EML540_25305 PF00561 alpha/beta hydrolase fold EML540_25310 PF17925 Tetracyclin repressor-like, C-terminal domain EML540_25310 PF00440 Bacterial regulatory proteins, tetR family EML540_25315 PF02625 XdhC and CoxI family EML540_25315 PF13478 XdhC Rossmann domain EML540_25320 PF01799 [2Fe-2S] binding domain EML540_25320 PF00111 2Fe-2S iron-sulfur cluster binding domain EML540_25325 PF03450 CO dehydrogenase flavoprotein C-terminal domain EML540_25325 PF00941 FAD binding domain in molybdopterin dehydrogenase EML540_25330 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EML540_25330 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EML540_25335 PF12804 MobA-like NTP transferase domain EML540_25335 PF00132 Bacterial transferase hexapeptide (six repeats) EML540_25355 PF00072 Response regulator receiver domain EML540_25355 PF00486 Transcriptional regulatory protein, C terminal EML540_25360 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_25375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_25375 PF13426 PAS domain EML540_25375 PF00072 Response regulator receiver domain EML540_25380 PF06745 KaiC EML540_25395 PF00313 'Cold-shock' DNA-binding domain EML540_25400 PF00226 DnaJ domain EML540_25405 PF01820 D-ala D-ala ligase N-terminus EML540_25405 PF07478 D-ala D-ala ligase C-terminus EML540_25420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML540_25420 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML540_25425 PF00005 ABC transporter EML540_25435 PF02653 Branched-chain amino acid transport system / permease component EML540_25445 PF00005 ABC transporter EML540_25445 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_25450 PF00296 Luciferase-like monooxygenase EML540_25455 PF03358 NADPH-dependent FMN reductase EML540_25460 PF13581 Histidine kinase-like ATPase domain EML540_25460 PF07536 HWE histidine kinase EML540_25460 PF13426 PAS domain EML540_25475 PF13458 Periplasmic binding protein EML540_25480 PF02653 Branched-chain amino acid transport system / permease component EML540_25490 PF00005 ABC transporter EML540_25490 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML540_25495 PF00005 ABC transporter EML540_25495 PF09383 NIL domain EML540_25500 PF00795 Carbon-nitrogen hydrolase EML540_25510 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML540_25510 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML540_25520 PF13533 Biotin-lipoyl like EML540_25530 PF04632 Fusaric acid resistance protein family EML540_25540 PF12833 Helix-turn-helix domain EML540_25540 PF02311 AraC-like ligand binding domain EML540_25550 PF03466 LysR substrate binding domain EML540_25550 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_25555 PF00753 Metallo-beta-lactamase superfamily EML540_25565 PF13614 AAA domain EML540_25570 PF02195 ParB-like nuclease domain EML540_25570 PF07506 RepB plasmid partitioning protein EML540_25575 PF11800 Replication protein C C-terminal region EML540_25575 PF03428 Replication protein C N-terminal domain EML540_25580 PF00589 Phage integrase family EML540_25640 PF01048 Phosphorylase superfamily EML540_25705 PF01527 Transposase EML540_25735 PF00067 Cytochrome P450 EML540_25740 PF00067 Cytochrome P450 EML540_25745 PF06903 VirK protein EML540_25755 PF00512 His Kinase A (phospho-acceptor) domain EML540_25755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML540_25760 PF01527 Transposase EML540_25765 PF05717 IS66 Orf2 like protein EML540_25770 PF03050 Transposase IS66 family EML540_25770 PF13817 IS66 C-terminal element EML540_25770 PF13005 zinc-finger binding domain of transposase IS66 EML540_25770 PF13007 Transposase C of IS166 homeodomain EML540_25785 PF01464 Transglycosylase SLT domain EML540_25790 PF04956 TrbC/VIRB2 family EML540_25795 PF05101 Type IV secretory pathway, VirB3-like protein EML540_25800 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML540_25810 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML540_25815 PF17413 Outer membrane lipoprotein virB7 EML540_25820 PF04335 VirB8 protein EML540_25825 PF03524 Conjugal transfer protein EML540_25830 PF03743 Bacterial conjugation TrbI-like protein EML540_25835 PF00437 Type II/IV secretion system protein EML540_25840 PF00486 Transcriptional regulatory protein, C terminal EML540_25840 PF00072 Response regulator receiver domain EML540_25845 PF07181 VirC2 protein EML540_25850 PF07015 VirC1 protein EML540_25855 PF07328 T-DNA border endonuclease VirD1 EML540_25860 PF03432 Relaxase/Mobilisation nuclease domain EML540_25865 PF02534 Type IV secretory system Conjugative DNA transfer EML540_25875 PF12189 Single-strand DNA-binding protein EML540_25880 PF07229 VirE2 EML540_25900 PF00440 Bacterial regulatory proteins, tetR family EML540_25900 PF08361 MAATS-type transcriptional repressor, C-terminal region EML540_25910 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML540_25915 PF08659 KR domain EML540_25915 PF00550 Phosphopantetheine attachment site EML540_25915 PF14765 Polyketide synthase dehydratase EML540_25915 PF08240 Alcohol dehydrogenase GroES-like domain EML540_25915 PF16197 Ketoacyl-synthetase C-terminal extension EML540_25915 PF00109 Beta-ketoacyl synthase, N-terminal domain EML540_25915 PF02801 Beta-ketoacyl synthase, C-terminal domain EML540_25915 PF00698 Acyl transferase domain EML540_25920 PF00561 alpha/beta hydrolase fold EML540_25925 PF00248 Aldo/keto reductase family EML540_25930 PF11871 Domain of unknown function (DUF3391) EML540_25930 PF01966 HD domain EML540_25950 PF00216 Bacterial DNA-binding protein EML540_25960 PF00313 'Cold-shock' DNA-binding domain EML540_25985 PF17762 HTH domain found in ParB protein EML540_25985 PF02195 ParB-like nuclease domain EML540_26015 PF01381 Helix-turn-helix EML540_26030 PF08808 RES domain EML540_26035 PF05284 Protein of unknown function (DUF736) EML540_26040 PF02899 Phage integrase, N-terminal SAM-like domain EML540_26040 PF00589 Phage integrase family EML540_26065 PF01638 HxlR-like helix-turn-helix EML540_26075 PF00216 Bacterial DNA-binding protein EML540_26080 PF05406 WGR domain EML540_26095 PF02534 Type IV secretory system Conjugative DNA transfer EML540_26100 PF06412 Conjugal transfer protein TraD EML540_26105 PF07820 TraC-like protein EML540_26110 PF17841 BID domain of Bartonella effector protein (Bep) EML540_26110 PF01443 Viral (Superfamily 1) RNA helicase EML540_26110 PF03389 MobA/MobL family EML540_26115 PF10502 Signal peptidase, peptidase S26 EML540_26120 PF00795 Carbon-nitrogen hydrolase EML540_26125 PF06871 TraH_2 EML540_26140 PF09228 Prokaryotic Transcriptional repressor TraM EML540_26165 PF01980 tRNA-methyltransferase O EML540_26170 PF03472 Autoinducer binding domain EML540_26170 PF00196 Bacterial regulatory proteins, luxR family EML540_26175 PF00128 Alpha amylase, catalytic domain EML540_26185 PF00455 DeoR C terminal sensor domain EML540_26185 PF08220 DeoR-like helix-turn-helix domain EML540_26190 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_26195 PF00005 ABC transporter EML540_26195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_26200 PF00005 ABC transporter EML540_26200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_26205 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26210 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_26210 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26215 PF03009 Glycerophosphoryl diester phosphodiesterase family EML540_26220 PF00459 Inositol monophosphatase family EML540_26235 PF01527 Transposase EML540_26270 PF00920 Dehydratase family EML540_26275 PF00248 Aldo/keto reductase family EML540_26290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML540_26295 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_26295 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26300 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26305 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_26305 PF00005 ABC transporter EML540_26310 PF00300 Histidine phosphatase superfamily (branch 1) EML540_26310 PF00106 short chain dehydrogenase EML540_26315 PF01266 FAD dependent oxidoreductase EML540_26320 PF05378 Hydantoinase/oxoprolinase N-terminal region EML540_26320 PF01968 Hydantoinase/oxoprolinase EML540_26355 PF05717 IS66 Orf2 like protein EML540_26360 PF13007 Transposase C of IS166 homeodomain EML540_26360 PF13817 IS66 C-terminal element EML540_26360 PF03050 Transposase IS66 family EML540_26360 PF13005 zinc-finger binding domain of transposase IS66 EML540_26365 PF07929 Plasmid pRiA4b ORF-3-like protein EML540_26370 PF08220 DeoR-like helix-turn-helix domain EML540_26370 PF00455 DeoR C terminal sensor domain EML540_26380 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26385 PF12911 N-terminal TM domain of oligopeptide transport permease C EML540_26385 PF00528 Binding-protein-dependent transport system inner membrane component EML540_26390 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML540_26390 PF00005 ABC transporter EML540_26400 PF13419 Haloacid dehalogenase-like hydrolase EML540_26405 PF03743 Bacterial conjugation TrbI-like protein EML540_26415 PF03524 Conjugal transfer protein EML540_26420 PF04335 VirB8 protein EML540_26425 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML540_26430 PF10907 Protein of unknown function (DUF2749) EML540_26440 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML540_26445 PF05101 Type IV secretory pathway, VirB3-like protein EML540_26450 PF04956 TrbC/VIRB2 family EML540_26455 PF00437 Type II/IV secretion system protein EML540_26460 PF00765 Autoinducer synthase EML540_26465 PF13614 AAA domain EML540_26470 PF02195 ParB-like nuclease domain EML540_26470 PF07506 RepB plasmid partitioning protein EML540_26475 PF03428 Replication protein C N-terminal domain EML540_26475 PF11800 Replication protein C C-terminal region EML540_26480 PF02371 Transposase IS116/IS110/IS902 family EML540_26480 PF01548 Transposase EML540_26495 PF03466 LysR substrate binding domain EML540_26495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML540_26500 PF01548 Transposase EML540_26500 PF02371 Transposase IS116/IS110/IS902 family EML540_26505 PF07042 TrfA protein EML540_26510 PF00436 Single-strand binding protein family EML540_26515 PF16509 TrfB plasmid transcriptional repressor EML540_26520 PF00437 Type II/IV secretion system protein EML540_26525 PF04956 TrbC/VIRB2 family EML540_26530 PF05101 Type IV secretory pathway, VirB3-like protein EML540_26535 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML540_26545 PF03524 Conjugal transfer protein EML540_26555 PF03743 Bacterial conjugation TrbI-like protein EML540_26605 PF13495 Phage integrase, N-terminal SAM-like domain EML540_26605 PF00589 Phage integrase family EML540_26610 PF00583 Acetyltransferase (GNAT) family EML540_26620 PF13427 Domain of unknown function (DUF4111) EML540_26625 PF07690 Major Facilitator Superfamily EML540_26630 PF00893 Small Multidrug Resistance protein EML540_26635 PF00239 Resolvase, N terminal domain EML540_26635 PF02796 Helix-turn-helix domain of resolvase EML540_26660 PF13362 Toprim domain EML540_26660 PF18818 Metallopeptidase superfamily domain EML540_26660 PF08401 Domain of unknown function (DUF1738) EML540_26670 PF01751 Toprim domain EML540_26670 PF01131 DNA topoisomerase EML540_26675 PF10502 Signal peptidase, peptidase S26 EML540_26680 PF02534 Type IV secretory system Conjugative DNA transfer EML540_26685 PF18821 Large polyvalent protein-associated domain 7 EML540_26685 PF03432 Relaxase/Mobilisation nuclease domain EML540_26695 PF17273 Family of unknown function (DUF5338) EML540_26700 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML540_26705 PF11657 Transcriptional activator TraM EML540_26720 PF11740 Plasmid replication region DNA-binding N-term EML540_26725 PF06613 KorB C-terminal beta-barrel domain EML540_26725 PF08535 KorB domain EML540_26725 PF02195 ParB-like nuclease domain EML540_26730 PF13614 AAA domain EML540_26735 PF16509 TrfB plasmid transcriptional repressor EML540_26740 PF10959 Protein of unknown function (DUF2761) EML540_26745 PF17394 Uncharacterized KleE stable inheritance protein EML540_26750 PF10892 Protein of unknown function (DUF2688) EML540_26755 PF17383 Uncharacterized KorC regulated protein A EML540_26770 PF03230 Antirestriction protein