locus-tag class description EML485_00005 PF11638 DnaA N-terminal domain EML485_00005 PF08299 Bacterial dnaA protein helix-turn-helix EML485_00005 PF00308 Bacterial dnaA protein EML485_00010 PF04055 Radical SAM superfamily EML485_00010 PF06969 HemN C-terminal domain EML485_00015 PF01725 Ham1 family EML485_00020 PF01138 3' exoribonuclease family, domain 1 EML485_00020 PF03725 3' exoribonuclease family, domain 2 EML485_00025 PF01628 HrcA protein C terminal domain EML485_00030 PF01025 GrpE EML485_00035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 EML485_00040 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus EML485_00040 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein EML485_00045 PF04552 Sigma-54, DNA binding domain EML485_00045 PF00309 Sigma-54 factor, Activator interacting domain (AID) EML485_00045 PF04963 Sigma-54 factor, core binding domain EML485_00050 PF00005 ABC transporter EML485_00055 PF03968 OstA-like protein EML485_00065 PF01343 Peptidase family S49 EML485_00070 PF00216 Bacterial DNA-binding protein EML485_00080 PF01170 Putative RNA methylase family UPF0020 EML485_00080 PF02926 THUMP domain EML485_00080 PF10672 S-adenosylmethionine-dependent methyltransferase EML485_00085 PF08032 RNA 2'-O ribose methyltransferase substrate binding EML485_00085 PF00588 SpoU rRNA Methylase family EML485_00090 PF01252 Signal peptidase (SPase) II EML485_00095 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML485_00095 PF00672 HAMP domain EML485_00095 PF00072 Response regulator receiver domain EML485_00095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_00095 PF01627 Hpt domain EML485_00095 PF00512 His Kinase A (phospho-acceptor) domain EML485_00105 PF05192 MutS domain III EML485_00105 PF01624 MutS domain I EML485_00105 PF00488 MutS domain V EML485_00105 PF05188 MutS domain II EML485_00105 PF05190 MutS family domain IV EML485_00110 PF01909 Nucleotidyltransferase domain EML485_00110 PF01966 HD domain EML485_00110 PF08335 GlnD PII-uridylyltransferase EML485_00110 PF01842 ACT domain EML485_00115 PF03023 Lipid II flippase MurJ EML485_00125 PF00579 tRNA synthetases class I (W and Y) EML485_00135 PF01106 NifU-like domain EML485_00140 PF00814 Glycoprotease family EML485_00150 PF01475 Ferric uptake regulator family EML485_00155 PF01553 Acyltransferase EML485_00160 PF04055 Radical SAM superfamily EML485_00160 PF01938 TRAM domain EML485_00160 PF00919 Uncharacterized protein family UPF0004 EML485_00165 PF02562 PhoH-like protein EML485_00170 PF02130 Uncharacterized protein family UPF0054 EML485_00175 PF00571 CBS domain EML485_00175 PF03471 Transporter associated domain EML485_00180 PF00795 Carbon-nitrogen hydrolase EML485_00185 PF01381 Helix-turn-helix EML485_00190 PF00438 S-adenosylmethionine synthetase, N-terminal domain EML485_00190 PF02773 S-adenosylmethionine synthetase, C-terminal domain EML485_00190 PF02772 S-adenosylmethionine synthetase, central domain EML485_00195 PF02390 Putative methyltransferase EML485_00200 PF00294 pfkB family carbohydrate kinase EML485_00205 PF02646 RmuC family EML485_00210 PF01327 Polypeptide deformylase EML485_00215 PF00551 Formyl transferase EML485_00215 PF02911 Formyl transferase, C-terminal domain EML485_00220 PF01416 tRNA pseudouridine synthase EML485_00230 PF07687 Peptidase dimerisation domain EML485_00230 PF01546 Peptidase family M20/M25/M40 EML485_00235 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal EML485_00235 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_00235 PF14602 Hexapeptide repeat of succinyl-transferase EML485_00245 PF00672 HAMP domain EML485_00245 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_00250 PF01156 Inosine-uridine preferring nucleoside hydrolase EML485_00255 PF00011 Hsp20/alpha crystallin family EML485_00280 PF00696 Amino acid kinase family EML485_00290 PF01926 50S ribosome-binding GTPase EML485_00295 PF14849 YidC periplasmic domain EML485_00295 PF02096 60Kd inner membrane protein EML485_00300 PF00825 Ribonuclease P EML485_00305 PF00468 Ribosomal protein L34 EML485_00310 PF02203 Tar ligand binding domain homologue EML485_00310 PF00672 HAMP domain EML485_00310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_00315 PF00672 HAMP domain EML485_00315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_00315 PF00512 His Kinase A (phospho-acceptor) domain EML485_00325 PF01209 ubiE/COQ5 methyltransferase family EML485_00330 PF00005 ABC transporter EML485_00335 PF00528 Binding-protein-dependent transport system inner membrane component EML485_00340 PF00528 Binding-protein-dependent transport system inner membrane component EML485_00350 PF00149 Calcineurin-like phosphoesterase EML485_00355 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain EML485_00355 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain EML485_00365 PF05544 Proline racemase EML485_00370 PF01979 Amidohydrolase family EML485_00375 PF00156 Phosphoribosyl transferase domain EML485_00380 PF00294 pfkB family carbohydrate kinase EML485_00395 PF00342 Phosphoglucose isomerase EML485_00400 PF13193 AMP-binding enzyme C-terminal domain EML485_00400 PF00501 AMP-binding enzyme EML485_00405 PF00005 ABC transporter EML485_00405 PF08402 TOBE domain EML485_00415 PF00528 Binding-protein-dependent transport system inner membrane component EML485_00420 PF07715 TonB-dependent Receptor Plug Domain EML485_00420 PF00593 TonB dependent receptor EML485_00440 PF01679 Proteolipid membrane potential modulator EML485_00460 PF03976 Polyphosphate kinase 2 (PPK2) EML485_00465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_00465 PF00512 His Kinase A (phospho-acceptor) domain EML485_00465 PF00989 PAS fold EML485_00465 PF16736 Single Cache-like EML485_00470 PF12849 PBP superfamily domain EML485_00475 PF00528 Binding-protein-dependent transport system inner membrane component EML485_00480 PF00528 Binding-protein-dependent transport system inner membrane component EML485_00485 PF00005 ABC transporter EML485_00490 PF01895 PhoU domain EML485_00495 PF00072 Response regulator receiver domain EML485_00495 PF00486 Transcriptional regulatory protein, C terminal EML485_00505 PF00202 Aminotransferase class-III EML485_00510 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EML485_00510 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EML485_00515 PF01430 Hsp33 protein EML485_00520 PF04379 ApaG domain EML485_00525 PF01053 Cys/Met metabolism PLP-dependent enzyme EML485_00530 PF00692 dUTPase EML485_00550 PF00589 Phage integrase family EML485_00765 PF02469 Fasciclin domain EML485_00785 PF00230 Major intrinsic protein EML485_00825 PF00196 Bacterial regulatory proteins, luxR family EML485_00825 PF00072 Response regulator receiver domain EML485_00835 PF01180 Dihydroorotate dehydrogenase EML485_00850 PF08241 Methyltransferase domain EML485_00870 PF02082 Transcriptional regulator EML485_00875 PF08494 DEAD/H associated EML485_00875 PF00271 Helicase conserved C-terminal domain EML485_00875 PF00270 DEAD/DEAH box helicase EML485_00895 PF01925 Sulfite exporter TauE/SafE EML485_00905 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_00905 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_00905 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML485_00905 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_00910 PF02803 Thiolase, C-terminal domain EML485_00910 PF00108 Thiolase, N-terminal domain EML485_00915 PF00378 Enoyl-CoA hydratase/isomerase EML485_00915 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EML485_00915 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EML485_00935 PF03334 Na+/H+ antiporter subunit EML485_00940 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EML485_00945 PF01899 Na+/H+ ion antiporter subunit EML485_00950 PF00361 Proton-conducting membrane transporter EML485_00955 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML485_00960 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML485_00960 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EML485_00960 PF00361 Proton-conducting membrane transporter EML485_00960 PF13244 Domain of unknown function (DUF4040) EML485_00970 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_00980 PF00072 Response regulator receiver domain EML485_00985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_00985 PF01627 Hpt domain EML485_00985 PF02895 Signal transducing histidine kinase, homodimeric domain EML485_00985 PF01584 CheW-like domain EML485_00990 PF01739 CheR methyltransferase, SAM binding domain EML485_00990 PF03705 CheR methyltransferase, all-alpha domain EML485_00995 PF01339 CheB methylesterase EML485_00995 PF00072 Response regulator receiver domain EML485_01000 PF00072 Response regulator receiver domain EML485_01005 PF03975 CheD chemotactic sensory transduction EML485_01015 PF08345 Flagellar M-ring protein C-terminal EML485_01015 PF01514 Secretory protein of YscJ/FliF family EML485_01020 PF00196 Bacterial regulatory proteins, luxR family EML485_01020 PF03472 Autoinducer binding domain EML485_01030 PF00672 HAMP domain EML485_01030 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_01035 PF00672 HAMP domain EML485_01035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_01035 PF00512 His Kinase A (phospho-acceptor) domain EML485_01035 PF01627 Hpt domain EML485_01035 PF00072 Response regulator receiver domain EML485_01040 PF01741 Large-conductance mechanosensitive channel, MscL EML485_01045 PF00155 Aminotransferase class I and II EML485_01050 PF01370 NAD dependent epimerase/dehydratase family EML485_01060 PF03884 DNA gyrase inhibitor YacG EML485_01065 PF02545 Maf-like protein EML485_01070 PF01176 Translation initiation factor 1A / IF-1 EML485_01080 PF06793 Uncharacterised protein family (UPF0262) EML485_01085 PF00815 Histidinol dehydrogenase EML485_01095 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EML485_01110 PF00669 Bacterial flagellin N-terminal helical region EML485_01110 PF00700 Bacterial flagellin C-terminal helical region EML485_01115 PF00669 Bacterial flagellin N-terminal helical region EML485_01115 PF00700 Bacterial flagellin C-terminal helical region EML485_01125 PF00669 Bacterial flagellin N-terminal helical region EML485_01125 PF00700 Bacterial flagellin C-terminal helical region EML485_01130 PF00813 FliP family EML485_01140 PF02107 Flagellar L-ring protein EML485_01150 PF02119 Flagellar P-ring protein EML485_01155 PF13144 Chaperone for flagella basal body P-ring formation EML485_01160 PF00460 Flagella basal body rod protein EML485_01160 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML485_01165 PF02049 Flagellar hook-basal body complex protein FliE EML485_01170 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML485_01175 PF00460 Flagella basal body rod protein EML485_01185 PF18269 T3SS EscN ATPase C-terminal domain EML485_01185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML485_01190 PF00460 Flagella basal body rod protein EML485_01190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML485_01200 PF01618 MotA/TolQ/ExbB proton channel family EML485_01205 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EML485_01210 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term EML485_01215 PF14841 FliG middle domain EML485_01215 PF14842 FliG N-terminal domain EML485_01215 PF01706 FliG C-terminal domain EML485_01220 PF01312 FlhB HrpN YscU SpaS Family EML485_01230 PF00700 Bacterial flagellin C-terminal helical region EML485_01230 PF00669 Bacterial flagellin N-terminal helical region EML485_01240 PF00691 OmpA family EML485_01240 PF13677 Membrane MotB of proton-channel complex MotA/MotB EML485_01250 PF02120 Flagellar hook-length control protein FliK EML485_01260 PF00486 Transcriptional regulatory protein, C terminal EML485_01265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal EML485_01265 PF07559 Flagellar basal body protein FlaE EML485_01265 PF00460 Flagella basal body rod protein EML485_01285 PF07378 Flagellar protein FlbT EML485_01290 PF03963 Flagellar hook capping protein - N-terminal region EML485_01295 PF01313 Bacterial export proteins, family 3 EML485_01300 PF00771 FHIPEP family EML485_01305 PF01311 Bacterial export proteins, family 1 EML485_01340 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain EML485_01340 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain EML485_01345 PF00356 Bacterial regulatory proteins, lacI family EML485_01350 PF01547 Bacterial extracellular solute-binding protein EML485_01355 PF00528 Binding-protein-dependent transport system inner membrane component EML485_01360 PF00528 Binding-protein-dependent transport system inner membrane component EML485_01365 PF00128 Alpha amylase, catalytic domain EML485_01370 PF00005 ABC transporter EML485_01370 PF17912 MalK OB fold domain EML485_01370 PF03459 TOBE domain EML485_01385 PF00920 Dehydratase family EML485_01390 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase EML485_01395 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EML485_01395 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EML485_01400 PF01266 FAD dependent oxidoreductase EML485_01405 PF00120 Glutamine synthetase, catalytic domain EML485_01425 PF00463 Isocitrate lyase family EML485_01430 PF09856 Predicted transcriptional regulator (DUF2083) EML485_01430 PF06114 IrrE N-terminal-like domain EML485_01430 PF01381 Helix-turn-helix EML485_01435 PF13416 Bacterial extracellular solute-binding protein EML485_01440 PF08402 TOBE domain EML485_01440 PF00005 ABC transporter EML485_01445 PF00528 Binding-protein-dependent transport system inner membrane component EML485_01450 PF00528 Binding-protein-dependent transport system inner membrane component EML485_01460 PF13188 PAS domain EML485_01460 PF13426 PAS domain EML485_01460 PF00512 His Kinase A (phospho-acceptor) domain EML485_01460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_01460 PF00989 PAS fold EML485_01470 PF02541 Ppx/GppA phosphatase family EML485_01475 PF01728 FtsJ-like methyltransferase EML485_01480 PF07690 Major Facilitator Superfamily EML485_01485 PF00753 Metallo-beta-lactamase superfamily EML485_01490 PF00478 IMP dehydrogenase / GMP reductase domain EML485_01490 PF00571 CBS domain EML485_01500 PF08240 Alcohol dehydrogenase GroES-like domain EML485_01500 PF00107 Zinc-binding dehydrogenase EML485_01505 PF01738 Dienelactone hydrolase family EML485_01510 PF00672 HAMP domain EML485_01510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_01510 PF00512 His Kinase A (phospho-acceptor) domain EML485_01515 PF00486 Transcriptional regulatory protein, C terminal EML485_01515 PF00072 Response regulator receiver domain EML485_01525 PF00994 Probable molybdopterin binding domain EML485_01530 PF00288 GHMP kinases N terminal domain EML485_01530 PF08544 GHMP kinases C terminal EML485_01540 PF00348 Polyprenyl synthetase EML485_01555 PF01343 Peptidase family S49 EML485_01555 PF06965 Na+/H+ antiporter 1 EML485_01565 PF02091 Glycyl-tRNA synthetase alpha subunit EML485_01575 PF04011 LemA family EML485_01580 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) EML485_01590 PF02092 Glycyl-tRNA synthetase beta subunit EML485_01590 PF05746 DALR anticodon binding domain EML485_01595 PF04463 Protein of unknown function (DUF523) EML485_01600 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_01600 PF00672 HAMP domain EML485_01610 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain EML485_01610 PF02843 Phosphoribosylglycinamide synthetase, C domain EML485_01610 PF02844 Phosphoribosylglycinamide synthetase, N domain EML485_01615 PF16921 Tex protein YqgF-like domain EML485_01615 PF17674 HHH domain EML485_01615 PF00575 S1 RNA binding domain EML485_01615 PF09371 Tex-like protein N-terminal domain EML485_01630 PF01040 UbiA prenyltransferase family EML485_01645 PF03466 LysR substrate binding domain EML485_01645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_01655 PF04107 Glutamate-cysteine ligase family 2(GCS2) EML485_01660 PF04452 RNA methyltransferase EML485_01665 PF01384 Phosphate transporter family EML485_01675 PF05116 Sucrose-6F-phosphate phosphohydrolase EML485_01680 PF13439 Glycosyltransferase Family 4 EML485_01680 PF00534 Glycosyl transferases group 1 EML485_01685 PF07729 FCD domain EML485_01685 PF00392 Bacterial regulatory proteins, gntR family EML485_01695 PF03466 LysR substrate binding domain EML485_01695 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_01700 PF01565 FAD binding domain EML485_01700 PF02913 FAD linked oxidases, C-terminal domain EML485_01705 PF02913 FAD linked oxidases, C-terminal domain EML485_01705 PF01565 FAD binding domain EML485_01710 PF13183 4Fe-4S dicluster domain EML485_01710 PF02754 Cysteine-rich domain EML485_01720 PF17969 L,D-transpeptidase C-terminal domain EML485_01720 PF03734 L,D-transpeptidase catalytic domain EML485_01725 PF00958 GMP synthase C terminal domain EML485_01725 PF00117 Glutamine amidotransferase class-I EML485_01725 PF03352 Methyladenine glycosylase EML485_01725 PF13302 Acetyltransferase (GNAT) domain EML485_01725 PF13673 Acetyltransferase (GNAT) domain EML485_01735 PF03601 Conserved hypothetical protein 698 EML485_01740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_01740 PF03466 LysR substrate binding domain EML485_01760 PF03129 Anticodon binding domain EML485_01760 PF13393 Histidyl-tRNA synthetase EML485_01770 PF13393 Histidyl-tRNA synthetase EML485_01775 PF01634 ATP phosphoribosyltransferase EML485_01780 PF07681 DoxX EML485_01790 PF00118 TCP-1/cpn60 chaperonin family EML485_01795 PF00166 Chaperonin 10 Kd subunit EML485_01805 PF06574 FAD synthetase EML485_01805 PF01687 Riboflavin kinase EML485_01810 PF08264 Anticodon-binding domain of tRNA EML485_01810 PF00133 tRNA synthetases class I (I, L, M and V) EML485_01820 PF14437 MafB19-like deaminase EML485_01825 PF01479 S4 domain EML485_01825 PF00849 RNA pseudouridylate synthase EML485_01835 PF01734 Patatin-like phospholipase EML485_01840 PF02254 TrkA-N domain EML485_01840 PF00999 Sodium/hydrogen exchanger family EML485_01845 PF01523 Putative modulator of DNA gyrase EML485_01850 PF00459 Inositol monophosphatase family EML485_01870 PF02606 Tetraacyldisaccharide-1-P 4'-kinase EML485_01880 PF01119 DNA mismatch repair protein, C-terminal domain EML485_01880 PF08676 MutL C terminal dimerisation domain EML485_01885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_01885 PF00512 His Kinase A (phospho-acceptor) domain EML485_01885 PF00072 Response regulator receiver domain EML485_01885 PF09456 RcsC Alpha-Beta-Loop (ABL) EML485_01890 PF00563 EAL domain EML485_01890 PF03707 Bacterial signalling protein N terminal repeat EML485_01890 PF00990 Diguanylate cyclase, GGDEF domain EML485_01890 PF13188 PAS domain EML485_01895 PF08450 SMP-30/Gluconolactonase/LRE-like region EML485_01900 PF01081 KDPG and KHG aldolase EML485_01905 PF05035 2-keto-3-deoxy-galactonokinase EML485_01920 PF00196 Bacterial regulatory proteins, luxR family EML485_01920 PF03472 Autoinducer binding domain EML485_01930 PF10609 NUBPL iron-transfer P-loop NTPase EML485_01935 PF01544 CorA-like Mg2+ transporter protein EML485_01940 PF02705 K+ potassium transporter EML485_01950 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter EML485_01955 PF00119 ATP synthase A chain EML485_01960 PF00137 ATP synthase subunit C EML485_01965 PF00430 ATP synthase B/B' CF(0) EML485_01970 PF00430 ATP synthase B/B' CF(0) EML485_01980 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_01985 PF01351 Ribonuclease HII EML485_02000 PF02913 FAD linked oxidases, C-terminal domain EML485_02000 PF01565 FAD binding domain EML485_02005 PF01300 Telomere recombination EML485_02005 PF03481 Putative GTP-binding controlling metal-binding EML485_02015 PF00848 Ring hydroxylating alpha subunit (catalytic domain) EML485_02015 PF00355 Rieske [2Fe-2S] domain EML485_02020 PF00175 Oxidoreductase NAD-binding domain EML485_02020 PF00111 2Fe-2S iron-sulfur cluster binding domain EML485_02020 PF00970 Oxidoreductase FAD-binding domain EML485_02025 PF07886 BA14K-like protein EML485_02030 PF07886 BA14K-like protein EML485_02040 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_02040 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_02040 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML485_02040 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_02055 PF05958 tRNA (Uracil-5-)-methyltransferase EML485_02060 PF01479 S4 domain EML485_02060 PF01728 FtsJ-like methyltransferase EML485_02065 PF00672 HAMP domain EML485_02065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_02105 PF02780 Transketolase, C-terminal domain EML485_02105 PF02779 Transketolase, pyrimidine binding domain EML485_02105 PF13292 1-deoxy-D-xylulose-5-phosphate synthase EML485_02110 PF05726 Pirin C-terminal cupin domain EML485_02110 PF02678 Pirin EML485_02115 PF02609 Exonuclease VII small subunit EML485_02120 PF00850 Histone deacetylase domain EML485_02125 PF02632 BioY family EML485_02130 PF02361 Cobalt transport protein EML485_02135 PF00005 ABC transporter EML485_02140 PF06224 Winged helix DNA-binding domain EML485_02145 PF00925 GTP cyclohydrolase II EML485_02145 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EML485_02150 PF01264 Chorismate synthase EML485_02165 PF00300 Histidine phosphatase superfamily (branch 1) EML485_02175 PF00684 DnaJ central domain EML485_02175 PF01556 DnaJ C terminal domain EML485_02175 PF00226 DnaJ domain EML485_02185 PF01243 Pyridoxamine 5'-phosphate oxidase EML485_02185 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region EML485_02200 PF13419 Haloacid dehalogenase-like hydrolase EML485_02210 PF01523 Putative modulator of DNA gyrase EML485_02220 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EML485_02220 PF02790 Cytochrome C oxidase subunit II, transmembrane domain EML485_02225 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML485_02230 PF01040 UbiA prenyltransferase family EML485_02235 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 EML485_02240 PF00510 Cytochrome c oxidase subunit III EML485_02250 PF02104 SURF1 family EML485_02255 PF02401 LytB protein EML485_02260 PF01636 Phosphotransferase enzyme family EML485_02265 PF00075 RNase H EML485_02280 PF00462 Glutaredoxin EML485_02280 PF08534 Redoxin EML485_02290 PF02622 Uncharacterized ACR, COG1678 EML485_02300 PF15887 Putative zinc-binding metallo-peptidase EML485_02300 PF10005 zinc-ribbon domain EML485_02305 PF00563 EAL domain EML485_02305 PF13185 GAF domain EML485_02305 PF00990 Diguanylate cyclase, GGDEF domain EML485_02310 PF13302 Acetyltransferase (GNAT) domain EML485_02315 PF05193 Peptidase M16 inactive domain EML485_02315 PF00675 Insulinase (Peptidase family M16) EML485_02320 PF00291 Pyridoxal-phosphate dependent enzyme EML485_02320 PF14821 Threonine synthase N terminus EML485_02330 PF13419 Haloacid dehalogenase-like hydrolase EML485_02335 PF07729 FCD domain EML485_02335 PF00392 Bacterial regulatory proteins, gntR family EML485_02350 PF01555 DNA methylase EML485_02350 PF18755 Restriction Enzyme Adenine Methylase Associated EML485_02365 PF14815 NUDIX domain EML485_02365 PF00730 HhH-GPD superfamily base excision DNA repair protein EML485_02375 PF13462 Thioredoxin EML485_02380 PF02463 RecF/RecN/SMC N terminal domain EML485_02385 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_02390 PF00391 PEP-utilising enzyme, mobile domain EML485_02390 PF02896 PEP-utilising enzyme, TIM barrel domain EML485_02390 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain EML485_02405 PF00375 Sodium:dicarboxylate symporter family EML485_02435 PF06039 Malate:quinone oxidoreductase (Mqo) EML485_02450 PF00009 Elongation factor Tu GTP binding domain EML485_02455 PF01507 Phosphoadenosine phosphosulfate reductase family EML485_02460 PF01507 Phosphoadenosine phosphosulfate reductase family EML485_02465 PF02082 Transcriptional regulator EML485_02475 PF00528 Binding-protein-dependent transport system inner membrane component EML485_02480 PF00528 Binding-protein-dependent transport system inner membrane component EML485_02485 PF12857 TOBE-like domain EML485_02485 PF00005 ABC transporter EML485_02490 PF14765 Polyketide synthase dehydratase EML485_02490 PF00550 Phosphopantetheine attachment site EML485_02490 PF08659 KR domain EML485_02490 PF08240 Alcohol dehydrogenase GroES-like domain EML485_02490 PF00107 Zinc-binding dehydrogenase EML485_02490 PF16197 Ketoacyl-synthetase C-terminal extension EML485_02490 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_02490 PF00698 Acyl transferase domain EML485_02490 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_02495 PF00563 EAL domain EML485_02495 PF00989 PAS fold EML485_02495 PF01590 GAF domain EML485_02495 PF00990 Diguanylate cyclase, GGDEF domain EML485_02505 PF13977 BetI-type transcriptional repressor, C-terminal EML485_02505 PF00440 Bacterial regulatory proteins, tetR family EML485_02510 PF00171 Aldehyde dehydrogenase family EML485_02515 PF00732 GMC oxidoreductase EML485_02515 PF05199 GMC oxidoreductase EML485_02530 PF00654 Voltage gated chloride channel EML485_02560 PF07690 Major Facilitator Superfamily EML485_02570 PF01068 ATP dependent DNA ligase domain EML485_02570 PF04675 DNA ligase N terminus EML485_02570 PF04679 ATP dependent DNA ligase C terminal region EML485_02580 PF04488 Glycosyltransferase sugar-binding region containing DXD motif EML485_02585 PF00403 Heavy-metal-associated domain EML485_02590 PF17969 L,D-transpeptidase C-terminal domain EML485_02590 PF03734 L,D-transpeptidase catalytic domain EML485_02595 PF17969 L,D-transpeptidase C-terminal domain EML485_02595 PF03734 L,D-transpeptidase catalytic domain EML485_02600 PF01047 MarR family EML485_02605 PF02566 OsmC-like protein EML485_02620 PF00005 ABC transporter EML485_02620 PF12848 ABC transporter EML485_02630 PF01047 MarR family EML485_02650 PF03466 LysR substrate binding domain EML485_02650 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_02655 PF00106 short chain dehydrogenase EML485_02670 PF05872 Bacterial protein of unknown function (DUF853) EML485_02680 PF01638 HxlR-like helix-turn-helix EML485_02685 PF00106 short chain dehydrogenase EML485_02690 PF12833 Helix-turn-helix domain EML485_02700 PF00248 Aldo/keto reductase family EML485_02705 PF08279 HTH domain EML485_02705 PF13280 WYL domain EML485_02720 PF01063 Amino-transferase class IV EML485_02725 PF00672 HAMP domain EML485_02725 PF02203 Tar ligand binding domain homologue EML485_02725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_02730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_02730 PF03466 LysR substrate binding domain EML485_02745 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML485_02745 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML485_02755 PF08279 HTH domain EML485_02755 PF13280 WYL domain EML485_02760 PF01810 LysE type translocator EML485_02765 PF01322 Cytochrome C' EML485_02770 PF00034 Cytochrome c EML485_02800 PF09278 MerR, DNA binding EML485_02800 PF00376 MerR family regulatory protein EML485_02810 PF02583 Metal-sensitive transcriptional repressor EML485_02815 PF01545 Cation efflux family EML485_02825 PF00005 ABC transporter EML485_02825 PF00571 CBS domain EML485_02830 PF00528 Binding-protein-dependent transport system inner membrane component EML485_02845 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain EML485_02845 PF00326 Prolyl oligopeptidase family EML485_02855 PF00701 Dihydrodipicolinate synthetase family EML485_02865 PF02805 Metal binding domain of Ada EML485_02865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML485_02865 PF12833 Helix-turn-helix domain EML485_02865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML485_02875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_02895 PF03006 Haemolysin-III related EML485_02905 PF01641 SelR domain EML485_02910 PF13244 Domain of unknown function (DUF4040) EML485_02910 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML485_02910 PF00361 Proton-conducting membrane transporter EML485_02915 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter EML485_02920 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML485_02925 PF00361 Proton-conducting membrane transporter EML485_02930 PF01899 Na+/H+ ion antiporter subunit EML485_02935 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) EML485_02940 PF03334 Na+/H+ antiporter subunit EML485_02945 PF05443 ROS/MUCR transcriptional regulator protein EML485_02960 PF02657 Fe-S metabolism associated domain EML485_02965 PF17264 Family of unknown function (DUF5330) EML485_02970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_02970 PF00512 His Kinase A (phospho-acceptor) domain EML485_03005 PF01810 LysE type translocator EML485_03010 PF03466 LysR substrate binding domain EML485_03010 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_03015 PF00144 Beta-lactamase EML485_03025 PF00905 Penicillin binding protein transpeptidase domain EML485_03025 PF00912 Transglycosylase EML485_03030 PF03692 Putative zinc- or iron-chelating domain EML485_03035 PF00905 Penicillin binding protein transpeptidase domain EML485_03040 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ EML485_03045 PF04221 RelB antitoxin EML485_03055 PF00403 Heavy-metal-associated domain EML485_03060 PF09278 MerR, DNA binding EML485_03060 PF00376 MerR family regulatory protein EML485_03075 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system EML485_03085 PF07690 Major Facilitator Superfamily EML485_03095 PF00251 Glycosyl hydrolases family 32 N-terminal domain EML485_03095 PF08244 Glycosyl hydrolases family 32 C terminal EML485_03100 PF02696 Uncharacterized ACR, YdiU/UPF0061 family EML485_03110 PF01037 Lrp/AsnC ligand binding domain EML485_03110 PF13404 AsnC-type helix-turn-helix domain EML485_03150 PF04860 Phage portal protein EML485_03250 PF00486 Transcriptional regulatory protein, C terminal EML485_03250 PF00072 Response regulator receiver domain EML485_03255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_03270 PF03100 CcmE EML485_03275 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal EML485_03275 PF01578 Cytochrome C assembly protein EML485_03280 PF03918 Cytochrome C biogenesis protein EML485_03285 PF13180 PDZ domain EML485_03290 PF00486 Transcriptional regulatory protein, C terminal EML485_03290 PF00072 Response regulator receiver domain EML485_03295 PF00512 His Kinase A (phospho-acceptor) domain EML485_03295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_03295 PF00672 HAMP domain EML485_03300 PF06629 MltA-interacting protein MipA EML485_03305 PF03710 Glutamate-ammonia ligase adenylyltransferase EML485_03305 PF08335 GlnD PII-uridylyltransferase EML485_03310 PF00512 His Kinase A (phospho-acceptor) domain EML485_03310 PF00989 PAS fold EML485_03310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_03320 PF17432 Domain of unknown function (DUF3458_C) ARM repeats EML485_03320 PF01433 Peptidase family M1 domain EML485_03320 PF11940 Domain of unknown function (DUF3458) Ig-like fold EML485_03325 PF00892 EamA-like transporter family EML485_03340 PF00012 Hsp70 protein EML485_03345 PF00990 Diguanylate cyclase, GGDEF domain EML485_03345 PF00563 EAL domain EML485_03345 PF03707 Bacterial signalling protein N terminal repeat EML485_03365 PF16925 Tetracyclin repressor-like, C-terminal domain EML485_03365 PF00440 Bacterial regulatory proteins, tetR family EML485_03380 PF08240 Alcohol dehydrogenase GroES-like domain EML485_03380 PF00107 Zinc-binding dehydrogenase EML485_03385 PF01638 HxlR-like helix-turn-helix EML485_03390 PF02673 Bacitracin resistance protein BacA EML485_03395 PF00571 CBS domain EML485_03395 PF03448 MgtE intracellular N domain EML485_03395 PF01769 Divalent cation transporter EML485_03400 PF07690 Major Facilitator Superfamily EML485_03405 PF00781 Diacylglycerol kinase catalytic domain EML485_03410 PF00202 Aminotransferase class-III EML485_03425 PF09957 Bacterial antitoxin of type II TA system, VapB EML485_03430 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus EML485_03430 PF01048 Phosphorylase superfamily EML485_03460 PF00155 Aminotransferase class I and II EML485_03470 PF14759 Reductase C-terminal EML485_03470 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_03475 PF03328 HpcH/HpaI aldolase/citrate lyase family EML485_03500 PF02530 Porin subfamily EML485_03505 PF02530 Porin subfamily EML485_03510 PF01464 Transglycosylase SLT domain EML485_03510 PF14718 Soluble lytic murein transglycosylase L domain EML485_03515 PF00701 Dihydrodipicolinate synthetase family EML485_03520 PF01668 SmpB protein EML485_03525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_03525 PF00672 HAMP domain EML485_03535 PF01192 RNA polymerase Rpb6 EML485_03540 PF04607 Region found in RelA / SpoT proteins EML485_03540 PF02824 TGS domain EML485_03540 PF13291 ACT domain EML485_03555 PF01648 4'-phosphopantetheinyl transferase superfamily EML485_03560 PF10502 Signal peptidase, peptidase S26 EML485_03565 PF00035 Double-stranded RNA binding motif EML485_03565 PF14622 Ribonuclease-III-like EML485_03570 PF07650 KH domain EML485_03570 PF01926 50S ribosome-binding GTPase EML485_03575 PF13545 Crp-like helix-turn-helix domain EML485_03575 PF00027 Cyclic nucleotide-binding domain EML485_03580 PF00072 Response regulator receiver domain EML485_03585 PF02565 Recombination protein O C terminal EML485_03585 PF11967 Recombination protein O N terminal EML485_03590 PF07690 Major Facilitator Superfamily EML485_03595 PF08241 Methyltransferase domain EML485_03605 PF01966 HD domain EML485_03615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_03625 PF00005 ABC transporter EML485_03630 PF00528 Binding-protein-dependent transport system inner membrane component EML485_03635 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment EML485_03640 PF05552 Conserved TM helix EML485_03640 PF00924 Mechanosensitive ion channel EML485_03650 PF01966 HD domain EML485_03655 PF01571 Aminomethyltransferase folate-binding domain EML485_03675 PF00293 NUDIX domain EML485_03680 PF02694 Uncharacterised BCR, YnfA/UPF0060 family EML485_03690 PF00072 Response regulator receiver domain EML485_03690 PF00990 Diguanylate cyclase, GGDEF domain EML485_03695 PF01066 CDP-alcohol phosphatidyltransferase EML485_03700 PF02666 Phosphatidylserine decarboxylase EML485_03705 PF00664 ABC transporter transmembrane region EML485_03705 PF00005 ABC transporter EML485_03710 PF01476 LysM domain EML485_03715 PF03641 Possible lysine decarboxylase EML485_03720 PF03717 Penicillin-binding Protein dimerisation domain EML485_03720 PF00905 Penicillin binding protein transpeptidase domain EML485_03725 PF00892 EamA-like transporter family EML485_03730 PF00561 alpha/beta hydrolase fold EML485_03745 PF04480 Protein of unknown function (DUF559) EML485_03750 PF09190 DALR domain EML485_03750 PF01406 tRNA synthetases class I (C) catalytic domain EML485_03755 PF00106 short chain dehydrogenase EML485_03760 PF00156 Phosphoribosyl transferase domain EML485_03760 PF13537 Glutamine amidotransferase domain EML485_03765 PF02674 Colicin V production protein EML485_03770 PF18073 Rubredoxin metal binding domain EML485_03770 PF06745 KaiC EML485_03785 PF01168 Alanine racemase, N-terminal domain EML485_03785 PF00842 Alanine racemase, C-terminal domain EML485_03790 PF12852 Cupin EML485_03790 PF12833 Helix-turn-helix domain EML485_03795 PF03591 AzlC protein EML485_03805 PF03796 DnaB-like helicase C terminal domain EML485_03805 PF00772 DnaB-like helicase N terminal domain EML485_03810 PF01047 MarR family EML485_03820 PF13533 Biotin-lipoyl like EML485_03825 PF03948 Ribosomal protein L9, C-terminal domain EML485_03825 PF01281 Ribosomal protein L9, N-terminal domain EML485_03835 PF01084 Ribosomal protein S18 EML485_03840 PF01250 Ribosomal protein S6 EML485_03845 PF00248 Aldo/keto reductase family EML485_03850 PF00698 Acyl transferase domain EML485_03860 PF00550 Phosphopantetheine attachment site EML485_03865 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_03865 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_03870 PF02618 YceG-like family EML485_03875 PF03755 YicC-like family, N-terminal region EML485_03875 PF08340 Domain of unknown function (DUF1732) EML485_03880 PF00625 Guanylate kinase EML485_03885 PF01738 Dienelactone hydrolase family EML485_03890 PF00398 Ribosomal RNA adenine dimethylase EML485_03895 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EML485_03905 PF04453 LPS transport system D EML485_03905 PF03968 OstA-like protein EML485_03920 PF00883 Cytosol aminopeptidase family, catalytic domain EML485_03920 PF02789 Cytosol aminopeptidase family, N-terminal domain EML485_03930 PF00563 EAL domain EML485_03930 PF00990 Diguanylate cyclase, GGDEF domain EML485_03930 PF03707 Bacterial signalling protein N terminal repeat EML485_03935 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_03940 PF00563 EAL domain EML485_03940 PF00990 Diguanylate cyclase, GGDEF domain EML485_03940 PF03707 Bacterial signalling protein N terminal repeat EML485_03945 PF00989 PAS fold EML485_03945 PF00512 His Kinase A (phospho-acceptor) domain EML485_03945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_03950 PF00196 Bacterial regulatory proteins, luxR family EML485_03950 PF00072 Response regulator receiver domain EML485_03960 PF12848 ABC transporter EML485_03960 PF00005 ABC transporter EML485_03965 PF17158 Membrane-associated sensor, integral membrane domain EML485_03965 PF00990 Diguanylate cyclase, GGDEF domain EML485_03970 PF13417 Glutathione S-transferase, N-terminal domain EML485_03975 PF00334 Nucleoside diphosphate kinase EML485_03995 PF02391 MoaE protein EML485_04000 PF02597 ThiS family EML485_04005 PF01066 CDP-alcohol phosphatidyltransferase EML485_04010 PF01541 GIY-YIG catalytic domain EML485_04010 PF08459 UvrC Helix-hairpin-helix N-terminal EML485_04010 PF02151 UvrB/uvrC motif EML485_04020 PF13505 Outer membrane protein beta-barrel domain EML485_04025 PF00043 Glutathione S-transferase, C-terminal domain EML485_04025 PF13417 Glutathione S-transferase, N-terminal domain EML485_04030 PF00445 Ribonuclease T2 family EML485_04040 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ EML485_04045 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML485_04045 PF01568 Molydopterin dinucleotide binding domain EML485_04045 PF00384 Molybdopterin oxidoreductase EML485_04050 PF00293 NUDIX domain EML485_04060 PF00551 Formyl transferase EML485_04065 PF00586 AIR synthase related protein, N-terminal domain EML485_04065 PF02769 AIR synthase related protein, C-terminal domain EML485_04070 PF01594 AI-2E family transporter EML485_04080 PF13090 Polyphosphate kinase C-terminal domain 2 EML485_04080 PF17941 Polyphosphate kinase C-terminal domain 1 EML485_04080 PF02503 Polyphosphate kinase middle domain EML485_04080 PF13089 Polyphosphate kinase N-terminal domain EML485_04085 PF02541 Ppx/GppA phosphatase family EML485_04090 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_04110 PF00211 Adenylate and Guanylate cyclase catalytic domain EML485_04120 PF00570 HRDC domain EML485_04120 PF01612 3'-5' exonuclease EML485_04125 PF07690 Major Facilitator Superfamily EML485_04130 PF01336 OB-fold nucleic acid binding domain EML485_04130 PF00152 tRNA synthetases class II (D, K and N) EML485_04130 PF02938 GAD domain EML485_04140 PF06123 Inner membrane protein CreD EML485_04145 PF01740 STAS domain EML485_04145 PF00916 Sulfate permease family EML485_04155 PF00521 DNA gyrase/topoisomerase IV, subunit A EML485_04155 PF03989 DNA gyrase C-terminal domain, beta-propeller EML485_04160 PF04377 Arginine-tRNA-protein transferase, C terminus EML485_04160 PF04376 Arginine-tRNA-protein transferase, N terminus EML485_04170 PF00490 Delta-aminolevulinic acid dehydratase EML485_04190 PF00464 Serine hydroxymethyltransferase EML485_04195 PF03477 ATP cone domain EML485_04200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EML485_04200 PF01872 RibD C-terminal domain EML485_04205 PF00677 Lumazine binding domain EML485_04210 PF01810 LysE type translocator EML485_04215 PF00885 6,7-dimethyl-8-ribityllumazine synthase EML485_04220 PF01029 NusB family EML485_04225 PF07690 Major Facilitator Superfamily EML485_04230 PF03030 Inorganic H+ pyrophosphatase EML485_04250 PF02504 Fatty acid synthesis protein EML485_04255 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EML485_04255 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EML485_04260 PF00216 Bacterial DNA-binding protein EML485_04265 PF13411 MerR HTH family regulatory protein EML485_04340 PF00403 Heavy-metal-associated domain EML485_04345 PF00175 Oxidoreductase NAD-binding domain EML485_04345 PF00111 2Fe-2S iron-sulfur cluster binding domain EML485_04345 PF00970 Oxidoreductase FAD-binding domain EML485_04350 PF09278 MerR, DNA binding EML485_04350 PF00376 MerR family regulatory protein EML485_04355 PF00528 Binding-protein-dependent transport system inner membrane component EML485_04360 PF00528 Binding-protein-dependent transport system inner membrane component EML485_04360 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_04365 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_04365 PF00005 ABC transporter EML485_04370 PF00005 ABC transporter EML485_04370 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_04375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_04385 PF02386 Cation transport protein EML485_04390 PF00291 Pyridoxal-phosphate dependent enzyme EML485_04390 PF00585 C-terminal regulatory domain of Threonine dehydratase EML485_04400 PF00072 Response regulator receiver domain EML485_04400 PF00990 Diguanylate cyclase, GGDEF domain EML485_04405 PF02525 Flavodoxin-like fold EML485_04410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_04410 PF03466 LysR substrate binding domain EML485_04415 PF02872 5'-nucleotidase, C-terminal domain EML485_04415 PF00149 Calcineurin-like phosphoesterase EML485_04440 PF00581 Rhodanese-like domain EML485_04445 PF01411 tRNA synthetases class II (A) EML485_04445 PF02272 DHHA1 domain EML485_04445 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML485_04450 PF00291 Pyridoxal-phosphate dependent enzyme EML485_04450 PF00571 CBS domain EML485_04455 PF00875 DNA photolyase EML485_04455 PF03441 FAD binding domain of DNA photolyase EML485_04465 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML485_04465 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML485_04495 PF06055 Exopolysaccharide synthesis, ExoD EML485_04545 PF02397 Bacterial sugar transferase EML485_04550 PF13439 Glycosyltransferase Family 4 EML485_04550 PF00534 Glycosyl transferases group 1 EML485_04575 PF02628 Cytochrome oxidase assembly protein EML485_04580 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase EML485_04585 PF01118 Semialdehyde dehydrogenase, NAD binding domain EML485_04590 PF00491 Arginase family EML485_04595 PF00380 Ribosomal protein S9/S16 EML485_04600 PF00572 Ribosomal protein L13 EML485_04610 PF13380 CoA binding domain EML485_04615 PF01053 Cys/Met metabolism PLP-dependent enzyme EML485_04640 PF00067 Cytochrome P450 EML485_04645 PF00990 Diguanylate cyclase, GGDEF domain EML485_04650 PF00574 Clp protease EML485_04655 PF06689 ClpX C4-type zinc finger EML485_04655 PF07724 AAA domain (Cdc48 subfamily) EML485_04655 PF10431 C-terminal, D2-small domain, of ClpB protein EML485_04660 PF02190 ATP-dependent protease La (LON) substrate-binding domain EML485_04660 PF00004 ATPase family associated with various cellular activities (AAA) EML485_04660 PF05362 Lon protease (S16) C-terminal proteolytic domain EML485_04665 PF00216 Bacterial DNA-binding protein EML485_04690 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 EML485_04695 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit EML485_04700 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit EML485_04710 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit EML485_04725 PF10531 SLBB domain EML485_04725 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EML485_04725 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EML485_04730 PF00384 Molybdopterin oxidoreductase EML485_04730 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EML485_04730 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal EML485_04735 PF00146 NADH dehydrogenase EML485_04740 PF12838 4Fe-4S dicluster domain EML485_04745 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 EML485_04750 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L EML485_04755 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus EML485_04755 PF00361 Proton-conducting membrane transporter EML485_04760 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus EML485_04760 PF00361 Proton-conducting membrane transporter EML485_04765 PF00361 Proton-conducting membrane transporter EML485_04770 PF08279 HTH domain EML485_04770 PF02237 Biotin protein ligase C terminal domain EML485_04770 PF03099 Biotin/lipoate A/B protein ligase family EML485_04775 PF12706 Beta-lactamase superfamily domain EML485_04775 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain EML485_04775 PF17770 Ribonuclease J C-terminal domain EML485_04785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML485_04785 PF03129 Anticodon binding domain EML485_04790 PF12704 MacB-like periplasmic core domain EML485_04790 PF02687 FtsX-like permease family EML485_04795 PF00005 ABC transporter EML485_04800 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML485_04800 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML485_04800 PF02811 PHP domain EML485_04800 PF14579 Helix-hairpin-helix motif EML485_04810 PF11799 impB/mucB/samB family C-terminal domain EML485_04810 PF00817 impB/mucB/samB family EML485_04820 PF00072 Response regulator receiver domain EML485_04825 PF00072 Response regulator receiver domain EML485_04825 PF00990 Diguanylate cyclase, GGDEF domain EML485_04830 PF00471 Ribosomal protein L33 EML485_04835 PF07690 Major Facilitator Superfamily EML485_04850 PF00773 RNB domain EML485_04850 PF08461 Ribonuclease R winged-helix domain EML485_04850 PF17876 Cold shock domain EML485_04850 PF00575 S1 RNA binding domain EML485_04850 PF08206 Ribonuclease B OB domain EML485_04855 PF01751 Toprim domain EML485_04855 PF13368 Topoisomerase C-terminal repeat EML485_04855 PF01396 Topoisomerase DNA binding C4 zinc finger EML485_04855 PF01131 DNA topoisomerase EML485_04865 PF02481 DNA recombination-mediator protein A EML485_04865 PF17782 DprA winged helix domain EML485_04870 PF02660 Glycerol-3-phosphate acyltransferase EML485_04875 PF01979 Amidohydrolase family EML485_04880 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain EML485_04880 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain EML485_04890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_04890 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_04890 PF18158 Adaptive response protein AidB N-terminal domain EML485_04895 PF00583 Acetyltransferase (GNAT) family EML485_04925 PF03652 Holliday junction resolvase EML485_04930 PF08274 PhnA Zinc-Ribbon EML485_04930 PF03831 PhnA domain EML485_04940 PF02686 Glu-tRNAGln amidotransferase C subunit EML485_04945 PF01425 Amidase EML485_04950 PF00583 Acetyltransferase (GNAT) family EML485_04950 PF13673 Acetyltransferase (GNAT) domain EML485_04955 PF09857 Putative toxin of bacterial toxin-antitoxin pair EML485_04970 PF02637 GatB domain EML485_04970 PF02934 GatB/GatE catalytic domain EML485_04980 PF00583 Acetyltransferase (GNAT) family EML485_04995 PF03588 Leucyl/phenylalanyl-tRNA protein transferase EML485_05000 PF00289 Biotin carboxylase, N-terminal domain EML485_05000 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_05000 PF02785 Biotin carboxylase C-terminal domain EML485_05005 PF00364 Biotin-requiring enzyme EML485_05010 PF01220 Dehydroquinase class II EML485_05015 PF06965 Na+/H+ antiporter 1 EML485_05015 PF13462 Thioredoxin EML485_05020 PF00155 Aminotransferase class I and II EML485_05045 PF00575 S1 RNA binding domain EML485_05045 PF10150 Ribonuclease E/G family EML485_05045 PF12111 Polyribonucleotide phosphorylase C terminal EML485_05055 PF01520 N-acetylmuramoyl-L-alanine amidase EML485_05060 PF17092 Penicillin-binding protein OB-like domain EML485_05060 PF00912 Transglycosylase EML485_05060 PF00905 Penicillin binding protein transpeptidase domain EML485_05080 PF01513 ATP-NAD kinase EML485_05085 PF02567 Phenazine biosynthesis-like protein EML485_05090 PF00679 Elongation factor G C-terminus EML485_05090 PF03764 Elongation factor G, domain IV EML485_05090 PF00009 Elongation factor Tu GTP binding domain EML485_05105 PF00111 2Fe-2S iron-sulfur cluster binding domain EML485_05115 PF00809 Pterin binding enzyme EML485_05120 PF02152 Dihydroneopterin aldolase EML485_05125 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) EML485_05135 PF05128 Domain of unknown function (DUF697) EML485_05140 PF04317 YcjX-like family, DUF463 EML485_05150 PF01258 Prokaryotic dksA/traR C4-type zinc finger EML485_05165 PF00512 His Kinase A (phospho-acceptor) domain EML485_05165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_05165 PF00072 Response regulator receiver domain EML485_05165 PF13188 PAS domain EML485_05165 PF08448 PAS fold EML485_05170 PF02617 ATP-dependent Clp protease adaptor protein ClpS EML485_05175 PF00004 ATPase family associated with various cellular activities (AAA) EML485_05175 PF17871 AAA lid domain EML485_05175 PF02861 Clp amino terminal domain, pathogenicity island component EML485_05175 PF07724 AAA domain (Cdc48 subfamily) EML485_05175 PF10431 C-terminal, D2-small domain, of ClpB protein EML485_05190 PF03466 LysR substrate binding domain EML485_05190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_05200 PF01230 HIT domain EML485_05225 PF00318 Ribosomal protein S2 EML485_05230 PF00889 Elongation factor TS EML485_05235 PF00696 Amino acid kinase family EML485_05240 PF01765 Ribosome recycling factor EML485_05245 PF01255 Putative undecaprenyl diphosphate synthase EML485_05255 PF02163 Peptidase family M50 EML485_05255 PF17820 PDZ domain EML485_05260 PF07244 Surface antigen variable number repeat EML485_05260 PF01103 Surface antigen EML485_05265 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD EML485_05265 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_05270 PF07977 FabA-like domain EML485_05275 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_05275 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 EML485_05280 PF06230 LpxI C-terminal domain EML485_05280 PF17930 LpxI N-terminal domain EML485_05285 PF02684 Lipid-A-disaccharide synthetase EML485_05290 PF07729 FCD domain EML485_05290 PF00392 Bacterial regulatory proteins, gntR family EML485_05295 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_05300 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05305 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05310 PF00005 ABC transporter EML485_05315 PF00285 Citrate synthase, C-terminal domain EML485_05330 PF01726 LexA DNA binding domain EML485_05330 PF00717 Peptidase S24-like EML485_05335 PF00005 ABC transporter EML485_05340 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05345 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05350 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_05355 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_05355 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_05360 PF08402 TOBE domain EML485_05360 PF00005 ABC transporter EML485_05365 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05370 PF00528 Binding-protein-dependent transport system inner membrane component EML485_05375 PF01547 Bacterial extracellular solute-binding protein EML485_05385 PF13378 Enolase C-terminal domain-like EML485_05385 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_05395 PF00107 Zinc-binding dehydrogenase EML485_05395 PF08240 Alcohol dehydrogenase GroES-like domain EML485_05400 PF04115 Ureidoglycolate lyase EML485_05405 PF00005 ABC transporter EML485_05410 PF00005 ABC transporter EML485_05410 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_05420 PF13458 Periplasmic binding protein EML485_05425 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_05425 PF12806 Acetyl-CoA dehydrogenase C-terminal like EML485_05425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_05425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_05430 PF00106 short chain dehydrogenase EML485_05435 PF00550 Phosphopantetheine attachment site EML485_05435 PF00501 AMP-binding enzyme EML485_05435 PF07993 Male sterility protein EML485_05440 PF00378 Enoyl-CoA hydratase/isomerase EML485_05450 PF07729 FCD domain EML485_05450 PF00392 Bacterial regulatory proteins, gntR family EML485_05455 PF01571 Aminomethyltransferase folate-binding domain EML485_05475 PF00793 DAHP synthetase I family EML485_05480 PF00113 Enolase, C-terminal TIM barrel domain EML485_05480 PF03952 Enolase, N-terminal domain EML485_05490 PF00676 Dehydrogenase E1 component EML485_05495 PF02780 Transketolase, C-terminal domain EML485_05495 PF02779 Transketolase, pyrimidine binding domain EML485_05495 PF00364 Biotin-requiring enzyme EML485_05505 PF02817 e3 binding domain EML485_05505 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML485_05505 PF00364 Biotin-requiring enzyme EML485_05515 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML485_05515 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_05525 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family EML485_05525 PF04055 Radical SAM superfamily EML485_05530 PF00892 EamA-like transporter family EML485_05550 PF03364 Polyketide cyclase / dehydrase and lipid transport EML485_05555 PF02464 Competence-damaged protein EML485_05560 PF02542 YgbB family EML485_05560 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase EML485_05565 PF01207 Dihydrouridine synthase (Dus) EML485_05570 PF00512 His Kinase A (phospho-acceptor) domain EML485_05570 PF00989 PAS fold EML485_05570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_05575 PF02954 Bacterial regulatory protein, Fis family EML485_05575 PF00072 Response regulator receiver domain EML485_05575 PF00158 Sigma-54 interaction domain EML485_05580 PF00672 HAMP domain EML485_05580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_05580 PF00512 His Kinase A (phospho-acceptor) domain EML485_05580 PF00989 PAS fold EML485_05585 PF00158 Sigma-54 interaction domain EML485_05585 PF02954 Bacterial regulatory protein, Fis family EML485_05585 PF00072 Response regulator receiver domain EML485_05590 PF02080 TrkA-C domain EML485_05590 PF02254 TrkA-N domain EML485_05595 PF17209 Hfq protein EML485_05600 PF16360 GTP-binding GTPase Middle Region EML485_05600 PF01926 50S ribosome-binding GTPase EML485_05600 PF13167 GTP-binding GTPase N-terminal EML485_05605 PF03819 MazG nucleotide pyrophosphohydrolase domain EML485_05615 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_05615 PF14824 Sirohaem biosynthesis protein central EML485_05615 PF10414 Sirohaem synthase dimerisation region EML485_05630 PF01795 MraW methylase family EML485_05635 PF00970 Oxidoreductase FAD-binding domain EML485_05635 PF00175 Oxidoreductase NAD-binding domain EML485_05640 PF07690 Major Facilitator Superfamily EML485_05655 PF02347 Glycine cleavage system P-protein EML485_05660 PF01597 Glycine cleavage H-protein EML485_05665 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML485_05665 PF01571 Aminomethyltransferase folate-binding domain EML485_05690 PF02537 CrcB-like protein, Camphor Resistance (CrcB) EML485_05695 PF01479 S4 domain EML485_05695 PF00849 RNA pseudouridylate synthase EML485_05700 PF13419 Haloacid dehalogenase-like hydrolase EML485_05715 PF01042 Endoribonuclease L-PSP EML485_05720 PF00756 Putative esterase EML485_05730 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 EML485_05740 PF10417 C-terminal domain of 1-Cys peroxiredoxin EML485_05740 PF00578 AhpC/TSA family EML485_05765 PF08281 Sigma-70, region 4 EML485_05765 PF04542 Sigma-70 region 2 EML485_05780 PF13936 Helix-turn-helix domain EML485_05780 PF00665 Integrase core domain EML485_05785 PF03358 NADPH-dependent FMN reductase EML485_05790 PF03960 ArsC family EML485_05795 PF01758 Sodium Bile acid symporter family EML485_05810 PF00654 Voltage gated chloride channel EML485_05815 PF12706 Beta-lactamase superfamily domain EML485_05815 PF03099 Biotin/lipoate A/B protein ligase family EML485_05820 PF01026 TatD related DNase EML485_05825 PF09334 tRNA synthetases class I (M) EML485_05825 PF08264 Anticodon-binding domain of tRNA EML485_05830 PF09115 DNA polymerase III, delta subunit, C terminal EML485_05835 PF02223 Thymidylate kinase EML485_05840 PF07943 Penicillin-binding protein 5, C-terminal domain EML485_05840 PF00768 D-alanyl-D-alanine carboxypeptidase EML485_05845 PF05036 Sporulation related domain EML485_05845 PF03330 Lytic transglycolase EML485_05890 PF03989 DNA gyrase C-terminal domain, beta-propeller EML485_05890 PF00521 DNA gyrase/topoisomerase IV, subunit A EML485_05895 PF01914 MarC family integral membrane protein EML485_05900 PF00571 CBS domain EML485_05900 PF01743 Poly A polymerase head domain EML485_05910 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH EML485_05915 PF00436 Single-strand binding protein family EML485_05920 PF17760 UvrA interaction domain EML485_05920 PF17755 UvrA DNA-binding domain EML485_05930 PF01207 Dihydrouridine synthase (Dus) EML485_05935 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML485_05940 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_05950 PF00950 ABC 3 transport family EML485_05955 PF00005 ABC transporter EML485_05960 PF01297 Zinc-uptake complex component A periplasmic EML485_05965 PF00356 Bacterial regulatory proteins, lacI family EML485_05975 PF00248 Aldo/keto reductase family EML485_05985 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EML485_05985 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_05990 PF03597 Cytochrome oxidase maturation protein cbb3-type EML485_06000 PF05751 FixH EML485_06005 PF13746 4Fe-4S dicluster domain EML485_06005 PF12801 4Fe-4S binding domain EML485_06005 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase EML485_06025 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP EML485_06025 PF13442 Cytochrome C oxidase, cbb3-type, subunit III EML485_06040 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML485_06045 PF00916 Sulfate permease family EML485_06045 PF01740 STAS domain EML485_06055 PF00924 Mechanosensitive ion channel EML485_06060 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase EML485_06075 PF00376 MerR family regulatory protein EML485_06075 PF09278 MerR, DNA binding EML485_06080 PF03448 MgtE intracellular N domain EML485_06080 PF01769 Divalent cation transporter EML485_06080 PF00571 CBS domain EML485_06085 PF00384 Molybdopterin oxidoreductase EML485_06095 PF01327 Polypeptide deformylase EML485_06120 PF03099 Biotin/lipoate A/B protein ligase family EML485_06125 PF00107 Zinc-binding dehydrogenase EML485_06125 PF08240 Alcohol dehydrogenase GroES-like domain EML485_06150 PF02355 Protein export membrane protein EML485_06150 PF07549 SecD/SecF GG Motif EML485_06155 PF02699 Preprotein translocase subunit EML485_06170 PF08240 Alcohol dehydrogenase GroES-like domain EML485_06170 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EML485_06175 PF00440 Bacterial regulatory proteins, tetR family EML485_06180 PF00067 Cytochrome P450 EML485_06190 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_06190 PF06426 Serine acetyltransferase, N-terminal EML485_06195 PF00561 alpha/beta hydrolase fold EML485_06205 PF01494 FAD binding domain EML485_06210 PF01053 Cys/Met metabolism PLP-dependent enzyme EML485_06215 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_06220 PF00528 Binding-protein-dependent transport system inner membrane component EML485_06225 PF00528 Binding-protein-dependent transport system inner membrane component EML485_06230 PF00005 ABC transporter EML485_06245 PF01368 DHH family EML485_06245 PF17768 RecJ OB domain EML485_06245 PF02272 DHHA1 domain EML485_06255 PF01842 ACT domain EML485_06255 PF03447 Homoserine dehydrogenase, NAD binding domain EML485_06255 PF00742 Homoserine dehydrogenase EML485_06260 PF00155 Aminotransferase class I and II EML485_06265 PF01156 Inosine-uridine preferring nucleoside hydrolase EML485_06270 PF01925 Sulfite exporter TauE/SafE EML485_06285 PF00107 Zinc-binding dehydrogenase EML485_06285 PF08240 Alcohol dehydrogenase GroES-like domain EML485_06290 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_06290 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_06300 PF07977 FabA-like domain EML485_06305 PF00550 Phosphopantetheine attachment site EML485_06310 PF04055 Radical SAM superfamily EML485_06315 PF00027 Cyclic nucleotide-binding domain EML485_06315 PF13545 Crp-like helix-turn-helix domain EML485_06325 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus EML485_06330 PF17746 SfsA N-terminal OB domain EML485_06330 PF03749 Sugar fermentation stimulation protein RE domain EML485_06335 PF00557 Metallopeptidase family M24 EML485_06340 PF04002 RadC-like JAB domain EML485_06355 PF01474 Class-II DAHP synthetase family EML485_06360 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML485_06360 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_06370 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EML485_06375 PF13419 Haloacid dehalogenase-like hydrolase EML485_06385 PF00206 Lyase EML485_06385 PF10415 Fumarase C C-terminus EML485_06395 PF00117 Glutamine amidotransferase class-I EML485_06395 PF06418 CTP synthase N-terminus EML485_06400 PF03840 Preprotein translocase SecG subunit EML485_06405 PF00121 Triosephosphate isomerase EML485_06415 PF00204 DNA gyrase B EML485_06415 PF01751 Toprim domain EML485_06415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_06415 PF00986 DNA gyrase B subunit, carboxyl terminus EML485_06420 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_06425 PF00440 Bacterial regulatory proteins, tetR family EML485_06425 PF16859 Tetracyclin repressor-like, C-terminal domain EML485_06430 PF01209 ubiE/COQ5 methyltransferase family EML485_06440 PF00574 Clp protease EML485_06450 PF01022 Bacterial regulatory protein, arsR family EML485_06455 PF13091 PLD-like domain EML485_06460 PF00072 Response regulator receiver domain EML485_06465 PF01571 Aminomethyltransferase folate-binding domain EML485_06465 PF01266 FAD dependent oxidoreductase EML485_06465 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML485_06465 PF16350 FAD dependent oxidoreductase central domain EML485_06470 PF12794 Mechanosensitive ion channel inner membrane domain 1 EML485_06470 PF00924 Mechanosensitive ion channel EML485_06470 PF12795 Mechanosensitive ion channel porin domain EML485_06530 PF00005 ABC transporter EML485_06535 PF02405 Permease MlaE EML485_06540 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_06540 PF13378 Enolase C-terminal domain-like EML485_06555 PF03949 Malic enzyme, NAD binding domain EML485_06555 PF01515 Phosphate acetyl/butaryl transferase EML485_06555 PF00390 Malic enzyme, N-terminal domain EML485_06565 PF00881 Nitroreductase family EML485_06570 PF07676 WD40-like Beta Propeller Repeat EML485_06575 PF00795 Carbon-nitrogen hydrolase EML485_06575 PF02540 NAD synthase EML485_06580 PF00884 Sulfatase EML485_06590 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML485_06590 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_06605 PF05697 Bacterial trigger factor protein (TF) EML485_06605 PF05698 Bacterial trigger factor protein (TF) C-terminus EML485_06605 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase EML485_06625 PF01134 Glucose inhibited division protein A EML485_06630 PF00107 Zinc-binding dehydrogenase EML485_06630 PF08240 Alcohol dehydrogenase GroES-like domain EML485_06640 PF00550 Phosphopantetheine attachment site EML485_06645 PF13193 AMP-binding enzyme C-terminal domain EML485_06645 PF00975 Thioesterase domain EML485_06645 PF00668 Condensation domain EML485_06645 PF00501 AMP-binding enzyme EML485_06645 PF00550 Phosphopantetheine attachment site EML485_06650 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML485_06650 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML485_06665 PF04715 Anthranilate synthase component I, N terminal region EML485_06665 PF00425 chorismate binding enzyme EML485_06670 PF01702 Queuine tRNA-ribosyltransferase EML485_06675 PF02547 Queuosine biosynthesis protein EML485_06680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EML485_06685 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD EML485_06690 PF01467 Cytidylyltransferase-like EML485_06705 PF00591 Glycosyl transferase family, a/b domain EML485_06705 PF02885 Glycosyl transferase family, helical bundle domain EML485_06710 PF00218 Indole-3-glycerol phosphate synthase EML485_06715 PF01967 MoaC family EML485_06720 PF00994 Probable molybdopterin binding domain EML485_06720 PF03454 MoeA C-terminal region (domain IV) EML485_06720 PF03453 MoeA N-terminal region (domain I and II) EML485_06725 PF17158 Membrane-associated sensor, integral membrane domain EML485_06725 PF00990 Diguanylate cyclase, GGDEF domain EML485_06735 PF02254 TrkA-N domain EML485_06735 PF00999 Sodium/hydrogen exchanger family EML485_06745 PF06463 Molybdenum Cofactor Synthesis C EML485_06745 PF04055 Radical SAM superfamily EML485_06750 PF00892 EamA-like transporter family EML485_06755 PF07690 Major Facilitator Superfamily EML485_06760 PF12804 MobA-like NTP transferase domain EML485_06765 PF03205 Molybdopterin guanine dinucleotide synthesis protein B EML485_06770 PF01551 Peptidase family M23 EML485_06780 PF01975 Survival protein SurE EML485_06785 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML485_06785 PF02403 Seryl-tRNA synthetase N-terminal domain EML485_06790 PF00902 Sec-independent protein translocase protein (TatC) EML485_06795 PF02416 mttA/Hcf106 family EML485_06800 PF02416 mttA/Hcf106 family EML485_06805 PF04079 Segregation and condensation complex subunit ScpB EML485_06810 PF02616 Segregation and condensation protein ScpA EML485_06815 PF00933 Glycosyl hydrolase family 3 N terminal domain EML485_06825 PF00750 tRNA synthetases class I (R) EML485_06825 PF05746 DALR anticodon binding domain EML485_06825 PF03485 Arginyl tRNA synthetase N terminal domain EML485_06830 PF01966 HD domain EML485_06830 PF13286 Phosphohydrolase-associated domain EML485_06835 PF01521 Iron-sulphur cluster biosynthesis EML485_06845 PF08238 Sel1 repeat EML485_06860 PF10458 Valyl tRNA synthetase tRNA binding arm EML485_06860 PF08264 Anticodon-binding domain of tRNA EML485_06860 PF00133 tRNA synthetases class I (I, L, M and V) EML485_06900 PF03358 NADPH-dependent FMN reductase EML485_06905 PF00994 Probable molybdopterin binding domain EML485_06905 PF02464 Competence-damaged protein EML485_06905 PF18146 Damage-inducible protein CinA KH domain EML485_06910 PF00582 Universal stress protein family EML485_06915 PF00156 Phosphoribosyl transferase domain EML485_06920 PF08471 Class II vitamin B12-dependent ribonucleotide reductase EML485_06920 PF02867 Ribonucleotide reductase, barrel domain EML485_06935 PF01566 Natural resistance-associated macrophage protein EML485_06945 PF00005 ABC transporter EML485_06945 PF00664 ABC transporter transmembrane region EML485_06950 PF01594 AI-2E family transporter EML485_06955 PF00583 Acetyltransferase (GNAT) family EML485_06970 PF01613 Flavin reductase like domain EML485_06985 PF03129 Anticodon binding domain EML485_06985 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) EML485_06985 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML485_06985 PF02824 TGS domain EML485_06995 PF01809 Putative membrane protein insertion efficiency factor EML485_07005 PF01227 GTP cyclohydrolase I EML485_07010 PF01502 Phosphoribosyl-AMP cyclohydrolase EML485_07015 PF01734 Patatin-like phospholipase EML485_07020 PF00478 IMP dehydrogenase / GMP reductase domain EML485_07020 PF00571 CBS domain EML485_07050 PF03315 Serine dehydratase beta chain EML485_07050 PF03313 Serine dehydratase alpha chain EML485_07085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_07085 PF03466 LysR substrate binding domain EML485_07090 PF12833 Helix-turn-helix domain EML485_07090 PF01965 DJ-1/PfpI family EML485_07095 PF01256 Carbohydrate kinase EML485_07095 PF03853 YjeF-related protein N-terminus EML485_07100 PF00543 Nitrogen regulatory protein P-II EML485_07105 PF00120 Glutamine synthetase, catalytic domain EML485_07105 PF03951 Glutamine synthetase, beta-Grasp domain EML485_07115 PF08755 Hemimethylated DNA-binding protein YccV like EML485_07125 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_07135 PF00892 EamA-like transporter family EML485_07145 PF00270 DEAD/DEAH box helicase EML485_07145 PF03461 TRCF domain EML485_07145 PF00271 Helicase conserved C-terminal domain EML485_07145 PF17757 UvrB interaction domain EML485_07145 PF02559 CarD-like/TRCF domain EML485_07155 PF17191 RecG wedge domain EML485_07155 PF00270 DEAD/DEAH box helicase EML485_07155 PF00271 Helicase conserved C-terminal domain EML485_07165 PF05016 ParE toxin of type II toxin-antitoxin system, parDE EML485_07170 PF01402 Ribbon-helix-helix protein, copG family EML485_07185 PF01380 SIS domain EML485_07190 PF14602 Hexapeptide repeat of succinyl-transferase EML485_07190 PF12804 MobA-like NTP transferase domain EML485_07190 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_07195 PF00392 Bacterial regulatory proteins, gntR family EML485_07195 PF07729 FCD domain EML485_07200 PF02608 ABC transporter substrate-binding protein PnrA-like EML485_07205 PF02653 Branched-chain amino acid transport system / permease component EML485_07210 PF02653 Branched-chain amino acid transport system / permease component EML485_07215 PF00005 ABC transporter EML485_07225 PF01494 FAD binding domain EML485_07230 PF03547 Membrane transport protein EML485_07235 PF02683 Cytochrome C biogenesis protein transmembrane region EML485_07265 PF00313 'Cold-shock' DNA-binding domain EML485_07315 PF00561 alpha/beta hydrolase fold EML485_07330 PF02687 FtsX-like permease family EML485_07330 PF00005 ABC transporter EML485_07330 PF12704 MacB-like periplasmic core domain EML485_07335 PF02687 FtsX-like permease family EML485_07335 PF12704 MacB-like periplasmic core domain EML485_07335 PF00005 ABC transporter EML485_07345 PF01521 Iron-sulphur cluster biosynthesis EML485_07350 PF01883 Iron-sulfur cluster assembly protein EML485_07355 PF00266 Aminotransferase class-V EML485_07360 PF01458 Uncharacterized protein family (UPF0051) EML485_07365 PF00005 ABC transporter EML485_07370 PF01458 Uncharacterized protein family (UPF0051) EML485_07375 PF00266 Aminotransferase class-V EML485_07380 PF02129 X-Pro dipeptidyl-peptidase (S15 family) EML485_07385 PF03702 Anhydro-N-acetylmuramic acid kinase EML485_07390 PF00579 tRNA synthetases class I (W and Y) EML485_07400 PF00578 AhpC/TSA family EML485_07405 PF04305 Protein of unknown function (DUF455) EML485_07410 PF01476 LysM domain EML485_07410 PF08525 Opacity-associated protein A N-terminal motif EML485_07410 PF01551 Peptidase family M23 EML485_07415 PF00271 Helicase conserved C-terminal domain EML485_07415 PF00270 DEAD/DEAH box helicase EML485_07435 PF00834 Ribulose-phosphate 3 epimerase family EML485_07445 PF00206 Lyase EML485_07445 PF10397 Adenylosuccinate lyase C-terminus EML485_07455 PF01259 SAICAR synthetase EML485_07460 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase EML485_07480 PF00155 Aminotransferase class I and II EML485_07480 PF00392 Bacterial regulatory proteins, gntR family EML485_07490 PF00586 AIR synthase related protein, N-terminal domain EML485_07490 PF02769 AIR synthase related protein, C-terminal domain EML485_07490 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain EML485_07510 PF00462 Glutaredoxin EML485_07515 PF07690 Major Facilitator Superfamily EML485_07520 PF00459 Inositol monophosphatase family EML485_07525 PF00459 Inositol monophosphatase family EML485_07530 PF01171 PP-loop family EML485_07535 PF04960 Glutaminase EML485_07540 PF00163 Ribosomal protein S4/S9 N-terminal domain EML485_07540 PF01479 S4 domain EML485_07545 PF03741 Integral membrane protein TerC family EML485_07555 PF00892 EamA-like transporter family EML485_07560 PF01810 LysE type translocator EML485_07570 PF01177 Asp/Glu/Hydantoin racemase EML485_07575 PF00588 SpoU rRNA Methylase family EML485_07585 PF00180 Isocitrate/isopropylmalate dehydrogenase EML485_07600 PF02272 DHHA1 domain EML485_07600 PF01411 tRNA synthetases class II (A) EML485_07600 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain EML485_07605 PF00154 recA bacterial DNA recombination protein EML485_07610 PF00294 pfkB family carbohydrate kinase EML485_07615 PF04227 Indigoidine synthase A like protein EML485_07620 PF00691 OmpA family EML485_07620 PF01389 OmpA-like transmembrane domain EML485_07625 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_07630 PF00528 Binding-protein-dependent transport system inner membrane component EML485_07635 PF00528 Binding-protein-dependent transport system inner membrane component EML485_07640 PF06233 Usg-like family EML485_07645 PF08241 Methyltransferase domain EML485_07650 PF09084 NMT1/THI5 like EML485_07655 PF13404 AsnC-type helix-turn-helix domain EML485_07655 PF01037 Lrp/AsnC ligand binding domain EML485_07660 PF03167 Uracil DNA glycosylase superfamily EML485_07670 PF00512 His Kinase A (phospho-acceptor) domain EML485_07670 PF00989 PAS fold EML485_07670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_07675 PF01219 Prokaryotic diacylglycerol kinase EML485_07680 PF02277 Phosphoribosyltransferase EML485_07685 PF02654 Cobalamin-5-phosphate synthase EML485_07700 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase EML485_07710 PF00005 ABC transporter EML485_07715 PF13407 Periplasmic binding protein domain EML485_07720 PF02653 Branched-chain amino acid transport system / permease component EML485_07725 PF00456 Transketolase, thiamine diphosphate binding domain EML485_07730 PF02780 Transketolase, C-terminal domain EML485_07730 PF02779 Transketolase, pyrimidine binding domain EML485_07735 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML485_07735 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML485_07740 PF04198 Putative sugar-binding domain EML485_07745 PF00106 short chain dehydrogenase EML485_07750 PF01061 ABC-2 type transporter EML485_07755 PF00005 ABC transporter EML485_07770 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_07770 PF08269 Cache domain EML485_07780 PF12002 MgsA AAA+ ATPase C terminal EML485_07780 PF00004 ATPase family associated with various cellular activities (AAA) EML485_07780 PF16193 AAA C-terminal domain EML485_07785 PF00595 PDZ domain EML485_07785 PF13180 PDZ domain EML485_07800 PF00920 Dehydratase family EML485_07805 PF00174 Oxidoreductase molybdopterin binding domain EML485_07810 PF01794 Ferric reductase like transmembrane component EML485_07820 PF05675 Protein of unknown function (DUF817) EML485_07825 PF01196 Ribosomal protein L17 EML485_07830 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain EML485_07830 PF01000 RNA polymerase Rpb3/RpoA insert domain EML485_07830 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain EML485_07835 PF00411 Ribosomal protein S11 EML485_07840 PF00416 Ribosomal protein S13/S18 EML485_07850 PF00344 SecY translocase EML485_07855 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A EML485_07860 PF00327 Ribosomal protein L30p/L7e EML485_07865 PF00333 Ribosomal protein S5, N-terminal domain EML485_07865 PF03719 Ribosomal protein S5, C-terminal domain EML485_07870 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast EML485_07875 PF00347 Ribosomal protein L6 EML485_07880 PF00410 Ribosomal protein S8 EML485_07885 PF00253 Ribosomal protein S14p/S29e EML485_07890 PF00673 ribosomal L5P family C-terminus EML485_07890 PF00281 Ribosomal protein L5 EML485_07895 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 EML485_07895 PF00467 KOW motif EML485_07900 PF00238 Ribosomal protein L14p/L23e EML485_07905 PF00366 Ribosomal protein S17 EML485_07910 PF00831 Ribosomal L29 protein EML485_07915 PF00252 Ribosomal protein L16p/L10e EML485_07920 PF00189 Ribosomal protein S3, C-terminal domain EML485_07920 PF07650 KH domain EML485_07925 PF00237 Ribosomal protein L22p/L17e EML485_07930 PF00203 Ribosomal protein S19 EML485_07935 PF03947 Ribosomal Proteins L2, C-terminal domain EML485_07935 PF00181 Ribosomal Proteins L2, RNA binding domain EML485_07940 PF00276 Ribosomal protein L23 EML485_07945 PF00573 Ribosomal protein L4/L1 family EML485_07950 PF00297 Ribosomal protein L3 EML485_07955 PF00338 Ribosomal protein S10p/S20e EML485_07960 PF03143 Elongation factor Tu C-terminal domain EML485_07960 PF00009 Elongation factor Tu GTP binding domain EML485_07960 PF03144 Elongation factor Tu domain 2 EML485_07965 PF03144 Elongation factor Tu domain 2 EML485_07965 PF00009 Elongation factor Tu GTP binding domain EML485_07965 PF14492 Elongation Factor G, domain II EML485_07965 PF03764 Elongation factor G, domain IV EML485_07965 PF00679 Elongation factor G C-terminus EML485_07970 PF00177 Ribosomal protein S7p/S5e EML485_07975 PF00164 Ribosomal protein S12/S23 EML485_07995 PF04997 RNA polymerase Rpb1, domain 1 EML485_07995 PF00623 RNA polymerase Rpb1, domain 2 EML485_07995 PF04983 RNA polymerase Rpb1, domain 3 EML485_07995 PF05000 RNA polymerase Rpb1, domain 4 EML485_07995 PF04998 RNA polymerase Rpb1, domain 5 EML485_08000 PF04560 RNA polymerase Rpb2, domain 7 EML485_08000 PF00562 RNA polymerase Rpb2, domain 6 EML485_08000 PF10385 RNA polymerase beta subunit external 1 domain EML485_08000 PF04563 RNA polymerase beta subunit EML485_08000 PF04561 RNA polymerase Rpb2, domain 2 EML485_08000 PF04565 RNA polymerase Rpb2, domain 3 EML485_08005 PF00542 Ribosomal protein L7/L12 C-terminal domain EML485_08005 PF16320 Ribosomal protein L7/L12 dimerisation domain EML485_08010 PF00466 Ribosomal protein L10 EML485_08015 PF00687 Ribosomal protein L1p/L10e family EML485_08020 PF03946 Ribosomal protein L11, N-terminal domain EML485_08020 PF00298 Ribosomal protein L11, RNA binding domain EML485_08025 PF02357 Transcription termination factor nusG EML485_08025 PF00467 KOW motif EML485_08030 PF00584 SecE/Sec61-gamma subunits of protein translocation complex EML485_08040 PF08485 Polysaccharide biosynthesis protein C-terminal EML485_08040 PF02719 Polysaccharide biosynthesis protein EML485_08045 PF03144 Elongation factor Tu domain 2 EML485_08045 PF00009 Elongation factor Tu GTP binding domain EML485_08045 PF03143 Elongation factor Tu C-terminal domain EML485_08050 PF03741 Integral membrane protein TerC family EML485_08055 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme EML485_08085 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML485_08085 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_08110 PF04542 Sigma-70 region 2 EML485_08110 PF04545 Sigma-70, region 4 EML485_08120 PF00072 Response regulator receiver domain EML485_08120 PF00158 Sigma-54 interaction domain EML485_08120 PF02954 Bacterial regulatory protein, Fis family EML485_08125 PF00072 Response regulator receiver domain EML485_08125 PF08769 Sporulation initiation factor Spo0A C terminal EML485_08130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_08130 PF00512 His Kinase A (phospho-acceptor) domain EML485_08130 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_08130 PF01627 Hpt domain EML485_08130 PF00072 Response regulator receiver domain EML485_08135 PF00072 Response regulator receiver domain EML485_08140 PF13426 PAS domain EML485_08140 PF08447 PAS fold EML485_08140 PF07536 HWE histidine kinase EML485_08145 PF00072 Response regulator receiver domain EML485_08150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_08150 PF00512 His Kinase A (phospho-acceptor) domain EML485_08150 PF08446 PAS fold EML485_08150 PF00360 Phytochrome region EML485_08150 PF01590 GAF domain EML485_08165 PF00588 SpoU rRNA Methylase family EML485_08165 PF08032 RNA 2'-O ribose methyltransferase substrate binding EML485_08170 PF03061 Thioesterase superfamily EML485_08195 PF13460 NAD(P)H-binding EML485_08200 PF01638 HxlR-like helix-turn-helix EML485_08205 PF00271 Helicase conserved C-terminal domain EML485_08205 PF04851 Type III restriction enzyme, res subunit EML485_08205 PF12344 Ultra-violet resistance protein B EML485_08205 PF17757 UvrB interaction domain EML485_08205 PF02151 UvrB/uvrC motif EML485_08210 PF00756 Putative esterase EML485_08210 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML485_08230 PF00226 DnaJ domain EML485_08230 PF01556 DnaJ C terminal domain EML485_08230 PF00684 DnaJ central domain EML485_08245 PF17151 Periplasmic sensor domain EML485_08245 PF00990 Diguanylate cyclase, GGDEF domain EML485_08255 PF00005 ABC transporter EML485_08255 PF08402 TOBE domain EML485_08265 PF01547 Bacterial extracellular solute-binding protein EML485_08270 PF00155 Aminotransferase class I and II EML485_08275 PF05025 RbsD / FucU transport protein family EML485_08280 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system EML485_08290 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain EML485_08290 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain EML485_08300 PF06719 AraC-type transcriptional regulator N-terminus EML485_08300 PF12833 Helix-turn-helix domain EML485_08305 PF08240 Alcohol dehydrogenase GroES-like domain EML485_08305 PF00107 Zinc-binding dehydrogenase EML485_08310 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_08315 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ EML485_08320 PF03472 Autoinducer binding domain EML485_08320 PF00196 Bacterial regulatory proteins, luxR family EML485_08325 PF13538 UvrD-like helicase C-terminal domain EML485_08325 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain EML485_08325 PF14490 Helix-hairpin-helix containing domain EML485_08345 PF08281 Sigma-70, region 4 EML485_08345 PF04542 Sigma-70 region 2 EML485_08355 PF00248 Aldo/keto reductase family EML485_08370 PF10369 Small subunit of acetolactate synthase EML485_08375 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML485_08375 PF00205 Thiamine pyrophosphate enzyme, central domain EML485_08375 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML485_08395 PF13302 Acetyltransferase (GNAT) domain EML485_08405 PF13180 PDZ domain EML485_08410 PF01145 SPFH domain / Band 7 family EML485_08415 PF01145 SPFH domain / Band 7 family EML485_08420 PF00186 Dihydrofolate reductase EML485_08425 PF00303 Thymidylate synthase EML485_08460 PF02913 FAD linked oxidases, C-terminal domain EML485_08460 PF01565 FAD binding domain EML485_08465 PF00873 AcrB/AcrD/AcrF family EML485_08470 PF13533 Biotin-lipoyl like EML485_08480 PF13361 UvrD-like helicase C-terminal domain EML485_08480 PF00580 UvrD/REP helicase N-terminal domain EML485_08490 PF00440 Bacterial regulatory proteins, tetR family EML485_08490 PF13977 BetI-type transcriptional repressor, C-terminal EML485_08495 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML485_08500 PF00561 alpha/beta hydrolase fold EML485_08520 PF00857 Isochorismatase family EML485_08540 PF01321 Creatinase/Prolidase N-terminal domain EML485_08540 PF00557 Metallopeptidase family M24 EML485_08555 PF02630 SCO1/SenC EML485_08565 PF01584 CheW-like domain EML485_08575 PF00929 Exonuclease EML485_08580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_08580 PF03466 LysR substrate binding domain EML485_08590 PF00583 Acetyltransferase (GNAT) family EML485_08595 PF01636 Phosphotransferase enzyme family EML485_08600 PF03119 NAD-dependent DNA ligase C4 zinc finger domain EML485_08600 PF12826 Helix-hairpin-helix motif EML485_08600 PF00533 BRCA1 C Terminus (BRCT) domain EML485_08600 PF03120 NAD-dependent DNA ligase OB-fold domain EML485_08600 PF01653 NAD-dependent DNA ligase adenylation domain EML485_08605 PF02463 RecF/RecN/SMC N terminal domain EML485_08610 PF13525 Outer membrane lipoprotein EML485_08615 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase EML485_08620 PF00091 Tubulin/FtsZ family, GTPase domain EML485_08620 PF12327 FtsZ family, C-terminal domain EML485_08625 PF02491 SHS2 domain inserted in FTSA EML485_08630 PF08478 POTRA domain, FtsQ-type EML485_08630 PF03799 Cell division protein FtsQ EML485_08635 PF07478 D-ala D-ala ligase C-terminus EML485_08635 PF01820 D-ala D-ala ligase N-terminus EML485_08640 PF00083 Sugar (and other) transporter EML485_08640 PF07690 Major Facilitator Superfamily EML485_08645 PF00990 Diguanylate cyclase, GGDEF domain EML485_08645 PF13188 PAS domain EML485_08645 PF00563 EAL domain EML485_08645 PF03707 Bacterial signalling protein N terminal repeat EML485_08650 PF01565 FAD binding domain EML485_08650 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain EML485_08655 PF01225 Mur ligase family, catalytic domain EML485_08655 PF02875 Mur ligase family, glutamate ligase domain EML485_08655 PF08245 Mur ligase middle domain EML485_08660 PF04101 Glycosyltransferase family 28 C-terminal domain EML485_08660 PF03033 Glycosyltransferase family 28 N-terminal domain EML485_08665 PF01098 Cell cycle protein EML485_08670 PF08245 Mur ligase middle domain EML485_08670 PF02875 Mur ligase family, glutamate ligase domain EML485_08675 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 EML485_08675 PF00953 Glycosyl transferase family 4 EML485_08680 PF01225 Mur ligase family, catalytic domain EML485_08680 PF02875 Mur ligase family, glutamate ligase domain EML485_08680 PF08245 Mur ligase middle domain EML485_08685 PF08245 Mur ligase middle domain EML485_08685 PF02875 Mur ligase family, glutamate ligase domain EML485_08685 PF01225 Mur ligase family, catalytic domain EML485_08690 PF00905 Penicillin binding protein transpeptidase domain EML485_08690 PF03717 Penicillin-binding Protein dimerisation domain EML485_08700 PF01795 MraW methylase family EML485_08705 PF02381 MraZ protein, putative antitoxin-like EML485_08710 PF03994 Domain of Unknown Function (DUF350) EML485_08725 PF13333 Integrase core domain EML485_08725 PF01527 Transposase EML485_08725 PF00665 Integrase core domain EML485_08725 PF13276 HTH-like domain EML485_08755 PF01510 N-acetylmuramoyl-L-alanine amidase EML485_08760 PF05099 Tellurite resistance protein TerB EML485_08760 PF00226 DnaJ domain EML485_08765 PF00365 Phosphofructokinase EML485_08785 PF13649 Methyltransferase domain EML485_08790 PF01183 Glycosyl hydrolases family 25 EML485_08800 PF02219 Methylenetetrahydrofolate reductase EML485_08805 PF01209 ubiE/COQ5 methyltransferase family EML485_08810 PF00005 ABC transporter EML485_08810 PF12848 ABC transporter EML485_08815 PF12146 Serine aminopeptidase, S33 EML485_08820 PF02515 CoA-transferase family III EML485_08825 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML485_08825 PF00205 Thiamine pyrophosphate enzyme, central domain EML485_08825 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML485_08835 PF01042 Endoribonuclease L-PSP EML485_08850 PF01476 LysM domain EML485_08850 PF03734 L,D-transpeptidase catalytic domain EML485_08855 PF07690 Major Facilitator Superfamily EML485_08865 PF10609 NUBPL iron-transfer P-loop NTPase EML485_08875 PF00465 Iron-containing alcohol dehydrogenase EML485_08880 PF00171 Aldehyde dehydrogenase family EML485_08895 PF03951 Glutamine synthetase, beta-Grasp domain EML485_08895 PF00120 Glutamine synthetase, catalytic domain EML485_08900 PF13520 Amino acid permease EML485_08910 PF01418 Helix-turn-helix domain, rpiR family EML485_08910 PF01380 SIS domain EML485_08930 PF08402 TOBE domain EML485_08930 PF00005 ABC transporter EML485_08935 PF08240 Alcohol dehydrogenase GroES-like domain EML485_08935 PF00107 Zinc-binding dehydrogenase EML485_08950 PF07690 Major Facilitator Superfamily EML485_08955 PF00809 Pterin binding enzyme EML485_08955 PF02310 B12 binding domain EML485_08955 PF02607 B12 binding domain EML485_08955 PF02574 Homocysteine S-methyltransferase EML485_08955 PF02965 Vitamin B12 dependent methionine synthase, activation domain EML485_08975 PF13505 Outer membrane protein beta-barrel domain EML485_08990 PF04402 Protein of unknown function (DUF541) EML485_09000 PF01894 Uncharacterised protein family UPF0047 EML485_09005 PF08446 PAS fold EML485_09005 PF00360 Phytochrome region EML485_09005 PF01590 GAF domain EML485_09005 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_09005 PF00512 His Kinase A (phospho-acceptor) domain EML485_09015 PF00140 Sigma-70 factor, region 1.2 EML485_09015 PF04542 Sigma-70 region 2 EML485_09015 PF04545 Sigma-70, region 4 EML485_09015 PF03979 Sigma-70 factor, region 1.1 EML485_09015 PF04539 Sigma-70 region 3 EML485_09015 PF04546 Sigma-70, non-essential region EML485_09020 PF01807 CHC2 zinc finger EML485_09020 PF08278 DNA primase DnaG DnaB-binding EML485_09020 PF08275 DNA primase catalytic core, N-terminal domain EML485_09020 PF10410 DnaB-helicase binding domain of primase EML485_09030 PF00117 Glutamine amidotransferase class-I EML485_09030 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain EML485_09040 PF00561 alpha/beta hydrolase fold EML485_09045 PF01554 MatE EML485_09050 PF00672 HAMP domain EML485_09050 PF02743 Cache domain EML485_09050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_09060 PF04228 Putative neutral zinc metallopeptidase EML485_09075 PF02142 MGS-like domain EML485_09075 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain EML485_09075 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_09085 PF00990 Diguanylate cyclase, GGDEF domain EML485_09085 PF07694 5TMR of 5TMR-LYT EML485_09100 PF03449 Transcription elongation factor, N-terminal EML485_09100 PF01272 Transcription elongation factor, GreA/GreB, C-term EML485_09105 PF00534 Glycosyl transferases group 1 EML485_09110 PF01037 Lrp/AsnC ligand binding domain EML485_09115 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_09120 PF03466 LysR substrate binding domain EML485_09120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_09130 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML485_09145 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_09145 PF03466 LysR substrate binding domain EML485_09155 PF01699 Sodium/calcium exchanger protein EML485_09160 PF00155 Aminotransferase class I and II EML485_09165 PF05231 MASE1 EML485_09165 PF00563 EAL domain EML485_09180 PF00313 'Cold-shock' DNA-binding domain EML485_09185 PF00753 Metallo-beta-lactamase superfamily EML485_09195 PF12802 MarR family EML485_09200 PF00486 Transcriptional regulatory protein, C terminal EML485_09200 PF00072 Response regulator receiver domain EML485_09205 PF16527 Two-component sensor protein CpxA, periplasmic domain EML485_09205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_09205 PF00672 HAMP domain EML485_09205 PF00512 His Kinase A (phospho-acceptor) domain EML485_09210 PF01588 Putative tRNA binding domain EML485_09215 PF03807 NADP oxidoreductase coenzyme F420-dependent EML485_09215 PF14748 Pyrroline-5-carboxylate reductase dimerisation EML485_09230 PF01790 Prolipoprotein diacylglyceryl transferase EML485_09240 PF02578 Multi-copper polyphenol oxidoreductase laccase EML485_09255 PF14572 Phosphoribosyl synthetase-associated domain EML485_09255 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase EML485_09265 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase EML485_09275 PF00535 Glycosyl transferase family 2 EML485_09280 PF00672 HAMP domain EML485_09280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_09285 PF00171 Aldehyde dehydrogenase family EML485_09290 PF02954 Bacterial regulatory protein, Fis family EML485_09295 PF03707 Bacterial signalling protein N terminal repeat EML485_09295 PF13188 PAS domain EML485_09295 PF00990 Diguanylate cyclase, GGDEF domain EML485_09295 PF00563 EAL domain EML485_09300 PF01386 Ribosomal L25p family EML485_09300 PF14693 Ribosomal protein TL5, C-terminal domain EML485_09305 PF00563 EAL domain EML485_09305 PF00990 Diguanylate cyclase, GGDEF domain EML485_09305 PF08448 PAS fold EML485_09305 PF08447 PAS fold EML485_09315 PF01195 Peptidyl-tRNA hydrolase EML485_09325 PF02617 ATP-dependent Clp protease adaptor protein ClpS EML485_09330 PF01926 50S ribosome-binding GTPase EML485_09330 PF06071 Protein of unknown function (DUF933) EML485_09345 PF00156 Phosphoribosyl transferase domain EML485_09350 PF00032 Cytochrome b(C-terminal)/b6/petD EML485_09350 PF02167 Cytochrome C1 family EML485_09350 PF00033 Cytochrome b/b6/petB EML485_09355 PF00033 Cytochrome b/b6/petB EML485_09355 PF00032 Cytochrome b(C-terminal)/b6/petD EML485_09360 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal EML485_09360 PF00355 Rieske [2Fe-2S] domain EML485_09370 PF00664 ABC transporter transmembrane region EML485_09370 PF00005 ABC transporter EML485_09375 PF00005 ABC transporter EML485_09375 PF00664 ABC transporter transmembrane region EML485_09380 PF00149 Calcineurin-like phosphoesterase EML485_09385 PF00588 SpoU rRNA Methylase family EML485_09390 PF02690 Na+/Pi-cotransporter EML485_09400 PF01218 Coproporphyrinogen III oxidase EML485_09415 PF13735 tRNA nucleotidyltransferase domain 2 putative EML485_09415 PF12627 Probable RNA and SrmB- binding site of polymerase A EML485_09415 PF01743 Poly A polymerase head domain EML485_09420 PF00293 NUDIX domain EML485_09430 PF07726 ATPase family associated with various cellular activities (AAA) EML485_09430 PF17863 AAA lid domain EML485_09450 PF00583 Acetyltransferase (GNAT) family EML485_09455 PF07690 Major Facilitator Superfamily EML485_09465 PF13409 Glutathione S-transferase, N-terminal domain EML485_09470 PF00293 NUDIX domain EML485_09480 PF00682 HMGL-like EML485_09480 PF08502 LeuA allosteric (dimerisation) domain EML485_09485 PF03594 Benzoate membrane transport protein EML485_09500 PF08281 Sigma-70, region 4 EML485_09500 PF04542 Sigma-70 region 2 EML485_09510 PF00574 Clp protease EML485_09515 PF04955 HupE / UreJ protein EML485_09525 PF14489 QueF-like protein EML485_09530 PF16916 Dimerisation domain of Zinc Transporter EML485_09530 PF01545 Cation efflux family EML485_09540 PF13458 Periplasmic binding protein EML485_09550 PF01022 Bacterial regulatory protein, arsR family EML485_09555 PF00571 CBS domain EML485_09555 PF00005 ABC transporter EML485_09560 PF00528 Binding-protein-dependent transport system inner membrane component EML485_09565 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML485_09570 PF00265 Thymidine kinase EML485_09575 PF00127 Copper binding proteins, plastocyanin/azurin family EML485_09585 PF00196 Bacterial regulatory proteins, luxR family EML485_09585 PF03472 Autoinducer binding domain EML485_09590 PF03350 Uncharacterized protein family, UPF0114 EML485_09595 PF07715 TonB-dependent Receptor Plug Domain EML485_09595 PF00593 TonB dependent receptor EML485_09595 PF04886 PT repeat EML485_09605 PF00117 Glutamine amidotransferase class-I EML485_09605 PF00425 chorismate binding enzyme EML485_09605 PF04715 Anthranilate synthase component I, N terminal region EML485_09615 PF01966 HD domain EML485_09615 PF11871 Domain of unknown function (DUF3391) EML485_09620 PF01979 Amidohydrolase family EML485_09620 PF13382 Adenine deaminase C-terminal domain EML485_09630 PF00583 Acetyltransferase (GNAT) family EML485_09635 PF00128 Alpha amylase, catalytic domain EML485_09640 PF00294 pfkB family carbohydrate kinase EML485_09660 PF01926 50S ribosome-binding GTPase EML485_09660 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal EML485_09680 PF05992 SbmA/BacA-like family EML485_09690 PF00557 Metallopeptidase family M24 EML485_09705 PF01799 [2Fe-2S] binding domain EML485_09705 PF00111 2Fe-2S iron-sulfur cluster binding domain EML485_09710 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EML485_09710 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EML485_09720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_09720 PF03466 LysR substrate binding domain EML485_09735 PF01979 Amidohydrolase family EML485_09750 PF01070 FMN-dependent dehydrogenase EML485_09755 PF00893 Small Multidrug Resistance protein EML485_09760 PF00440 Bacterial regulatory proteins, tetR family EML485_09760 PF17932 Tetracyclin repressor-like, C-terminal domain EML485_09765 PF00768 D-alanyl-D-alanine carboxypeptidase EML485_09765 PF07943 Penicillin-binding protein 5, C-terminal domain EML485_09775 PF00576 HIUase/Transthyretin family EML485_09780 PF04115 Ureidoglycolate lyase EML485_09795 PF01014 Uricase EML485_09795 PF09349 OHCU decarboxylase EML485_09805 PF06299 Protein of unknown function (DUF1045) EML485_09810 PF01266 FAD dependent oxidoreductase EML485_09815 PF01266 FAD dependent oxidoreductase EML485_09815 PF05430 S-adenosyl-L-methionine-dependent methyltransferase EML485_09820 PF00672 HAMP domain EML485_09820 PF00072 Response regulator receiver domain EML485_09820 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML485_09820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_09820 PF01627 Hpt domain EML485_09820 PF00512 His Kinase A (phospho-acceptor) domain EML485_09825 PF00270 DEAD/DEAH box helicase EML485_09825 PF00271 Helicase conserved C-terminal domain EML485_09830 PF00892 EamA-like transporter family EML485_09835 PF07681 DoxX EML485_09840 PF03734 L,D-transpeptidase catalytic domain EML485_09840 PF01476 LysM domain EML485_09850 PF14403 Circularly permuted ATP-grasp type 2 EML485_09860 PF08379 Bacterial transglutaminase-like N-terminal region EML485_09860 PF01841 Transglutaminase-like superfamily EML485_09875 PF00583 Acetyltransferase (GNAT) family EML485_09890 PF02653 Branched-chain amino acid transport system / permease component EML485_09895 PF00005 ABC transporter EML485_09900 PF13407 Periplasmic binding protein domain EML485_09905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_09905 PF03466 LysR substrate binding domain EML485_09935 PF01757 Acyltransferase family EML485_09945 PF00672 HAMP domain EML485_09945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_09950 PF07690 Major Facilitator Superfamily EML485_09955 PF02574 Homocysteine S-methyltransferase EML485_09955 PF02310 B12 binding domain EML485_09955 PF00809 Pterin binding enzyme EML485_09955 PF02965 Vitamin B12 dependent methionine synthase, activation domain EML485_09955 PF02607 B12 binding domain EML485_09960 PF00528 Binding-protein-dependent transport system inner membrane component EML485_09965 PF00528 Binding-protein-dependent transport system inner membrane component EML485_09970 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_09975 PF00005 ABC transporter EML485_09990 PF00331 Glycosyl hydrolase family 10 EML485_09995 PF00535 Glycosyl transferase family 2 EML485_10010 PF03808 Glycosyl transferase WecB/TagA/CpsF family EML485_10025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML485_10025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML485_10025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML485_10025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML485_10030 PF01152 Bacterial-like globin EML485_10050 PF00440 Bacterial regulatory proteins, tetR family EML485_10050 PF08362 YcdC-like protein, C-terminal region EML485_10055 PF07687 Peptidase dimerisation domain EML485_10055 PF01546 Peptidase family M20/M25/M40 EML485_10060 PF01979 Amidohydrolase family EML485_10065 PF00293 NUDIX domain EML485_10070 PF00005 ABC transporter EML485_10075 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10080 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10095 PF00873 AcrB/AcrD/AcrF family EML485_10105 PF00753 Metallo-beta-lactamase superfamily EML485_10105 PF12706 Beta-lactamase superfamily domain EML485_10110 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_10115 PF01730 UreF EML485_10120 PF02814 UreE urease accessory protein, N-terminal domain EML485_10120 PF05194 UreE urease accessory protein, C-terminal domain EML485_10125 PF08534 Redoxin EML485_10135 PF01979 Amidohydrolase family EML485_10135 PF00449 Urease alpha-subunit, N-terminal domain EML485_10145 PF07007 Lysozyme inhibitor LprI EML485_10155 PF00699 Urease beta subunit EML485_10160 PF06906 Protein of unknown function (DUF1272) EML485_10165 PF00547 Urease, gamma subunit EML485_10170 PF01774 UreD urease accessory protein EML485_10180 PF00005 ABC transporter EML485_10185 PF00005 ABC transporter EML485_10185 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_10195 PF02653 Branched-chain amino acid transport system / permease component EML485_10205 PF10931 Protein of unknown function (DUF2735) EML485_10210 PF03951 Glutamine synthetase, beta-Grasp domain EML485_10210 PF00120 Glutamine synthetase, catalytic domain EML485_10215 PF00106 short chain dehydrogenase EML485_10220 PF00072 Response regulator receiver domain EML485_10220 PF00512 His Kinase A (phospho-acceptor) domain EML485_10220 PF18415 Histidine kinase receptor ArcB trans-membrane domain EML485_10220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_10220 PF00989 PAS fold EML485_10220 PF01627 Hpt domain EML485_10225 PF00072 Response regulator receiver domain EML485_10235 PF01522 Polysaccharide deacetylase EML485_10240 PF13458 Periplasmic binding protein EML485_10250 PF00005 ABC transporter EML485_10255 PF00005 ABC transporter EML485_10255 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_10260 PF11862 Domain of unknown function (DUF3382) EML485_10260 PF02653 Branched-chain amino acid transport system / permease component EML485_10265 PF02653 Branched-chain amino acid transport system / permease component EML485_10270 PF00459 Inositol monophosphatase family EML485_10300 PF00072 Response regulator receiver domain EML485_10300 PF00486 Transcriptional regulatory protein, C terminal EML485_10320 PF10090 Histidine phosphotransferase C-terminal domain EML485_10335 PF00588 SpoU rRNA Methylase family EML485_10345 PF00849 RNA pseudouridylate synthase EML485_10355 PF00140 Sigma-70 factor, region 1.2 EML485_10355 PF04542 Sigma-70 region 2 EML485_10355 PF04545 Sigma-70, region 4 EML485_10365 PF00709 Adenylosuccinate synthetase EML485_10390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_10400 PF03167 Uracil DNA glycosylase superfamily EML485_10405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_10410 PF04304 Protein of unknown function (DUF454) EML485_10415 PF00005 ABC transporter EML485_10420 PF01032 FecCD transport family EML485_10425 PF01497 Periplasmic binding protein EML485_10435 PF06228 Haem utilisation ChuX/HutX EML485_10445 PF00551 Formyl transferase EML485_10450 PF00512 His Kinase A (phospho-acceptor) domain EML485_10450 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_10450 PF00672 HAMP domain EML485_10455 PF00072 Response regulator receiver domain EML485_10455 PF00486 Transcriptional regulatory protein, C terminal EML485_10465 PF03401 Tripartite tricarboxylate transporter family receptor EML485_10475 PF01970 Tripartite tricarboxylate transporter TctA family EML485_10490 PF01032 FecCD transport family EML485_10495 PF01032 FecCD transport family EML485_10500 PF00005 ABC transporter EML485_10505 PF00210 Ferritin-like domain EML485_10520 PF03466 LysR substrate binding domain EML485_10520 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_10525 PF07859 alpha/beta hydrolase fold EML485_10530 PF13533 Biotin-lipoyl like EML485_10535 PF00873 AcrB/AcrD/AcrF family EML485_10550 PF13091 PLD-like domain EML485_10550 PF13396 Phospholipase_D-nuclease N-terminal EML485_10555 PF08543 Phosphomethylpyrimidine kinase EML485_10560 PF00484 Carbonic anhydrase EML485_10570 PF02774 Semialdehyde dehydrogenase, dimerisation domain EML485_10570 PF01118 Semialdehyde dehydrogenase, NAD binding domain EML485_10575 PF00083 Sugar (and other) transporter EML485_10580 PF01262 Alanine dehydrogenase/PNT, C-terminal domain EML485_10580 PF05222 Alanine dehydrogenase/PNT, N-terminal domain EML485_10580 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch EML485_10585 PF02233 NAD(P) transhydrogenase beta subunit EML485_10590 PF01613 Flavin reductase like domain EML485_10595 PF00881 Nitroreductase family EML485_10600 PF00561 alpha/beta hydrolase fold EML485_10605 PF01042 Endoribonuclease L-PSP EML485_10610 PF00857 Isochorismatase family EML485_10615 PF00296 Luciferase-like monooxygenase EML485_10620 PF01126 Heme oxygenase EML485_10625 PF00701 Dihydrodipicolinate synthetase family EML485_10630 PF07729 FCD domain EML485_10630 PF00392 Bacterial regulatory proteins, gntR family EML485_10640 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10645 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10650 PF00005 ABC transporter EML485_10650 PF17912 MalK OB fold domain EML485_10650 PF03459 TOBE domain EML485_10655 PF00294 pfkB family carbohydrate kinase EML485_10660 PF03576 Peptidase family S58 EML485_10665 PF01063 Amino-transferase class IV EML485_10670 PF03466 LysR substrate binding domain EML485_10670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_10680 PF00005 ABC transporter EML485_10680 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_10685 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_10685 PF00005 ABC transporter EML485_10690 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10690 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_10695 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10700 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_10705 PF01244 Membrane dipeptidase (Peptidase family M19) EML485_10715 PF03706 Lysylphosphatidylglycerol synthase TM region EML485_10715 PF09924 Uncharacterised conserved protein (DUF2156) EML485_10735 PF07690 Major Facilitator Superfamily EML485_10745 PF04444 Catechol dioxygenase N terminus EML485_10745 PF00775 Dioxygenase EML485_10750 PF00465 Iron-containing alcohol dehydrogenase EML485_10760 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML485_10760 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_10765 PF01613 Flavin reductase like domain EML485_10785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_10785 PF00512 His Kinase A (phospho-acceptor) domain EML485_10790 PF00072 Response regulator receiver domain EML485_10790 PF00486 Transcriptional regulatory protein, C terminal EML485_10800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML485_10835 PF01259 SAICAR synthetase EML485_10845 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_10845 PF00529 HlyD membrane-fusion protein of T1SS EML485_10850 PF00873 AcrB/AcrD/AcrF family EML485_10855 PF02321 Outer membrane efflux protein EML485_10860 PF09285 Elongation factor P, C-terminal EML485_10860 PF01132 Elongation factor P (EF-P) OB domain EML485_10860 PF08207 Elongation factor P (EF-P) KOW-like domain EML485_10865 PF00152 tRNA synthetases class II (D, K and N) EML485_10870 PF04055 Radical SAM superfamily EML485_10870 PF12544 Lysine-2,3-aminomutase EML485_10885 PF03466 LysR substrate binding domain EML485_10885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_10890 PF01266 FAD dependent oxidoreductase EML485_10900 PF00528 Binding-protein-dependent transport system inner membrane component EML485_10905 PF00005 ABC transporter EML485_10905 PF03459 TOBE domain EML485_10915 PF03576 Peptidase family S58 EML485_10920 PF05690 Thiazole biosynthesis protein ThiG EML485_10930 PF01266 FAD dependent oxidoreductase EML485_10935 PF01964 Radical SAM ThiC family EML485_10935 PF13667 ThiC-associated domain EML485_10940 PF00550 Phosphopantetheine attachment site EML485_10970 PF00005 ABC transporter EML485_10970 PF00664 ABC transporter transmembrane region EML485_10975 PF00027 Cyclic nucleotide-binding domain EML485_10975 PF13545 Crp-like helix-turn-helix domain EML485_10985 PF00672 HAMP domain EML485_10985 PF00211 Adenylate and Guanylate cyclase catalytic domain EML485_10995 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EML485_10995 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EML485_10995 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EML485_11000 PF00534 Glycosyl transferases group 1 EML485_11000 PF13439 Glycosyltransferase Family 4 EML485_11015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_11015 PF00005 ABC transporter EML485_11020 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_11025 PF00528 Binding-protein-dependent transport system inner membrane component EML485_11030 PF00528 Binding-protein-dependent transport system inner membrane component EML485_11030 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_11040 PF13439 Glycosyltransferase Family 4 EML485_11040 PF00534 Glycosyl transferases group 1 EML485_11045 PF03033 Glycosyltransferase family 28 N-terminal domain EML485_11045 PF04101 Glycosyltransferase family 28 C-terminal domain EML485_11050 PF03932 CutC family EML485_11065 PF02838 Glycosyl hydrolase family 20, domain 2 EML485_11065 PF00728 Glycosyl hydrolase family 20, catalytic domain EML485_11075 PF01380 SIS domain EML485_11075 PF01418 Helix-turn-helix domain, rpiR family EML485_11085 PF00005 ABC transporter EML485_11085 PF17912 MalK OB fold domain EML485_11085 PF03459 TOBE domain EML485_11090 PF01547 Bacterial extracellular solute-binding protein EML485_11095 PF00528 Binding-protein-dependent transport system inner membrane component EML485_11100 PF00528 Binding-protein-dependent transport system inner membrane component EML485_11110 PF00392 Bacterial regulatory proteins, gntR family EML485_11110 PF07702 UTRA domain EML485_11115 PF01380 SIS domain EML485_11120 PF01979 Amidohydrolase family EML485_11125 PF00480 ROK family EML485_11130 PF01494 FAD binding domain EML485_11135 PF01569 PAP2 superfamily EML485_11140 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain EML485_11140 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase EML485_11140 PF13288 DXP reductoisomerase C-terminal domain EML485_11145 PF00155 Aminotransferase class I and II EML485_11155 PF17243 POTRA domain TamA domain 1 EML485_11155 PF07244 Surface antigen variable number repeat EML485_11155 PF01103 Surface antigen EML485_11165 PF01584 CheW-like domain EML485_11170 PF08447 PAS fold EML485_11170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_11170 PF13426 PAS domain EML485_11175 PF02634 FdhD/NarQ family EML485_11180 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain EML485_11185 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML485_11185 PF02874 ATP synthase alpha/beta family, beta-barrel domain EML485_11190 PF00231 ATP synthase EML485_11195 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML485_11195 PF02874 ATP synthase alpha/beta family, beta-barrel domain EML485_11195 PF00306 ATP synthase alpha/beta chain, C terminal domain EML485_11200 PF00213 ATP synthase delta (OSCP) subunit EML485_11210 PF17764 3′ DNA-binding domain (3′BD) EML485_11210 PF18319 PriA DNA helicase Cys-rich region (CRR) domain EML485_11210 PF00270 DEAD/DEAH box helicase EML485_11210 PF18074 Primosomal protein N C-terminal domain EML485_11215 PF00589 Phage integrase family EML485_11215 PF02899 Phage integrase, N-terminal SAM-like domain EML485_11235 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_11235 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML485_11240 PF01810 LysE type translocator EML485_11250 PF00364 Biotin-requiring enzyme EML485_11250 PF02817 e3 binding domain EML485_11250 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML485_11255 PF00676 Dehydrogenase E1 component EML485_11255 PF16078 2-oxoglutarate dehydrogenase N-terminus EML485_11255 PF02779 Transketolase, pyrimidine binding domain EML485_11255 PF16870 2-oxoglutarate dehydrogenase C-terminal EML485_11260 PF02629 CoA binding domain EML485_11260 PF00549 CoA-ligase EML485_11265 PF00549 CoA-ligase EML485_11265 PF08442 ATP-grasp domain EML485_11270 PF00056 lactate/malate dehydrogenase, NAD binding domain EML485_11270 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain EML485_11275 PF03969 AFG1-like ATPase EML485_11280 PF02974 Protease inhibitor Inh EML485_11285 PF13085 2Fe-2S iron-sulfur cluster binding domain EML485_11285 PF13237 4Fe-4S dicluster domain EML485_11290 PF02910 Fumarate reductase flavoprotein C-term EML485_11290 PF00890 FAD binding domain EML485_11300 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit EML485_11325 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus EML485_11325 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus EML485_11330 PF00814 Glycoprotease family EML485_11335 PF03900 Porphobilinogen deaminase, C-terminal domain EML485_11335 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain EML485_11360 PF00117 Glutamine amidotransferase class-I EML485_11370 PF02325 YGGT family EML485_11375 PF02594 Uncharacterised ACR, YggU family COG1872 EML485_11380 PF00719 Inorganic pyrophosphatase EML485_11390 PF00009 Elongation factor Tu GTP binding domain EML485_11390 PF03144 Elongation factor Tu domain 2 EML485_11390 PF00679 Elongation factor G C-terminus EML485_11395 PF01432 Peptidase family M3 EML485_11400 PF01047 MarR family EML485_11405 PF07690 Major Facilitator Superfamily EML485_11410 PF00764 Arginosuccinate synthase EML485_11415 PF00106 short chain dehydrogenase EML485_11420 PF01810 LysE type translocator EML485_11425 PF00005 ABC transporter EML485_11430 PF02653 Branched-chain amino acid transport system / permease component EML485_11440 PF04055 Radical SAM superfamily EML485_11455 PF01329 Pterin 4 alpha carbinolamine dehydratase EML485_11460 PF01451 Low molecular weight phosphotyrosine protein phosphatase EML485_11465 PF02834 LigT like Phosphoesterase EML485_11470 PF13472 GDSL-like Lipase/Acylhydrolase family EML485_11475 PF00005 ABC transporter EML485_11485 PF01027 Inhibitor of apoptosis-promoting Bax1 EML485_11500 PF00694 Aconitase C-terminal domain EML485_11500 PF00330 Aconitase family (aconitate hydratase) EML485_11505 PF00005 ABC transporter EML485_11510 PF03379 CcmB protein EML485_11515 PF01578 Cytochrome C assembly protein EML485_11525 PF08534 Redoxin EML485_11530 PF00990 Diguanylate cyclase, GGDEF domain EML485_11535 PF10755 Protein of unknown function (DUF2585) EML485_11540 PF04279 Intracellular septation protein A EML485_11545 PF00448 SRP54-type protein, GTPase domain EML485_11545 PF02881 SRP54-type protein, helical bundle domain EML485_11550 PF00919 Uncharacterized protein family UPF0004 EML485_11550 PF04055 Radical SAM superfamily EML485_11555 PF01678 Diaminopimelate epimerase EML485_11560 PF12706 Beta-lactamase superfamily domain EML485_11565 PF02978 Signal peptide binding domain EML485_11565 PF02881 SRP54-type protein, helical bundle domain EML485_11565 PF00448 SRP54-type protein, GTPase domain EML485_11570 PF01817 Chorismate mutase type II EML485_11570 PF02153 Prephenate dehydrogenase EML485_11575 PF00886 Ribosomal protein S16 EML485_11580 PF01782 RimM N-terminal domain EML485_11580 PF05239 PRC-barrel domain EML485_11585 PF01746 tRNA (Guanine-1)-methyltransferase EML485_11595 PF01245 Ribosomal protein L19 EML485_11600 PF00005 ABC transporter EML485_11600 PF00664 ABC transporter transmembrane region EML485_11605 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_11605 PF00529 HlyD membrane-fusion protein of T1SS EML485_11615 PF07690 Major Facilitator Superfamily EML485_11620 PF00330 Aconitase family (aconitate hydratase) EML485_11625 PF01435 Peptidase family M48 EML485_11630 PF00005 ABC transporter EML485_11635 PF00528 Binding-protein-dependent transport system inner membrane component EML485_11640 PF01547 Bacterial extracellular solute-binding protein EML485_11650 PF16326 ABC transporter C-terminal domain EML485_11650 PF00005 ABC transporter EML485_11660 PF04204 Homoserine O-succinyltransferase EML485_11665 PF01263 Aldose 1-epimerase EML485_11670 PF00912 Transglycosylase EML485_11675 PF00348 Polyprenyl synthetase EML485_11680 PF13488 Glycine zipper EML485_11680 PF00691 OmpA family EML485_11685 PF04551 GcpE protein EML485_11690 PF07690 Major Facilitator Superfamily EML485_11695 PF00455 DeoR C terminal sensor domain EML485_11695 PF08220 DeoR-like helix-turn-helix domain EML485_11700 PF00364 Biotin-requiring enzyme EML485_11700 PF02785 Biotin carboxylase C-terminal domain EML485_11700 PF00289 Biotin carboxylase, N-terminal domain EML485_11700 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_11700 PF02436 Conserved carboxylase domain EML485_11700 PF00682 HMGL-like EML485_11705 PF00196 Bacterial regulatory proteins, luxR family EML485_11705 PF00072 Response regulator receiver domain EML485_11710 PF00664 ABC transporter transmembrane region EML485_11710 PF00005 ABC transporter EML485_11720 PF06165 Glycosyltransferase family 36 EML485_11720 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain EML485_11720 PF10091 Putative glucoamylase EML485_11725 PF01546 Peptidase family M20/M25/M40 EML485_11725 PF07687 Peptidase dimerisation domain EML485_11730 PF01266 FAD dependent oxidoreductase EML485_11735 PF00291 Pyridoxal-phosphate dependent enzyme EML485_11740 PF00920 Dehydratase family EML485_11745 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML485_11745 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_11750 PF01370 NAD dependent epimerase/dehydratase family EML485_11755 PF02913 FAD linked oxidases, C-terminal domain EML485_11755 PF01565 FAD binding domain EML485_11760 PF00392 Bacterial regulatory proteins, gntR family EML485_11760 PF07729 FCD domain EML485_11770 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML485_11775 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_11780 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_11785 PF16177 Acetyl-coenzyme A synthetase N-terminus EML485_11785 PF13193 AMP-binding enzyme C-terminal domain EML485_11785 PF00501 AMP-binding enzyme EML485_11795 PF01168 Alanine racemase, N-terminal domain EML485_11800 PF13603 Leucyl-tRNA synthetase, Domain 2 EML485_11800 PF00133 tRNA synthetases class I (I, L, M and V) EML485_11800 PF08264 Anticodon-binding domain of tRNA EML485_11815 PF11953 Domain of unknown function (DUF3470) EML485_11815 PF00037 4Fe-4S binding domain EML485_11830 PF01494 FAD binding domain EML485_11840 PF00543 Nitrogen regulatory protein P-II EML485_11845 PF00909 Ammonium Transporter Family EML485_11850 PF01580 FtsK/SpoIIIE family EML485_11850 PF09397 Ftsk gamma domain EML485_11850 PF17854 FtsK alpha domain EML485_11850 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EML485_11855 PF03548 Outer membrane lipoprotein carrier protein LolA EML485_11870 PF00486 Transcriptional regulatory protein, C terminal EML485_11870 PF00072 Response regulator receiver domain EML485_11880 PF02559 CarD-like/TRCF domain EML485_11885 PF05088 Bacterial NAD-glutamate dehydrogenase EML485_11890 PF11700 Vacuole effluxer Atg22 like EML485_11895 PF05233 PHB accumulation regulatory domain EML485_11895 PF07879 PHB/PHA accumulation regulator DNA-binding domain EML485_11900 PF02803 Thiolase, C-terminal domain EML485_11900 PF00108 Thiolase, N-terminal domain EML485_11915 PF00210 Ferritin-like domain EML485_11920 PF00293 NUDIX domain EML485_11930 PF03572 Peptidase family S41 EML485_11930 PF13180 PDZ domain EML485_11940 PF02590 Predicted SPOUT methyltransferase EML485_11950 PF01467 Cytidylyltransferase-like EML485_11955 PF00171 Aldehyde dehydrogenase family EML485_11960 PF01472 PUA domain EML485_11960 PF00696 Amino acid kinase family EML485_11965 PF01018 GTP1/OBG EML485_11965 PF01926 50S ribosome-binding GTPase EML485_11970 PF13302 Acetyltransferase (GNAT) domain EML485_11980 PF01016 Ribosomal L27 protein EML485_11985 PF00829 Ribosomal prokaryotic L21 protein EML485_12000 PF03328 HpcH/HpaI aldolase/citrate lyase family EML485_12010 PF00694 Aconitase C-terminal domain EML485_12015 PF00180 Isocitrate/isopropylmalate dehydrogenase EML485_12020 PF03150 Di-haem cytochrome c peroxidase EML485_12025 PF07685 CobB/CobQ-like glutamine amidotransferase domain EML485_12025 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML485_12030 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_12030 PF10414 Sirohaem synthase dimerisation region EML485_12030 PF14824 Sirohaem biosynthesis protein central EML485_12035 PF01888 CbiD EML485_12040 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_12050 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_12055 PF02571 Precorrin-6x reductase CbiJ/CobK EML485_12060 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_12065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_12070 PF02570 Precorrin-8X methylmutase EML485_12075 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EML485_12080 PF02514 CobN/Magnesium Chelatase EML485_12085 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_12085 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML485_12095 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP EML485_12100 PF07685 CobB/CobQ-like glutamine amidotransferase domain EML485_12100 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML485_12105 PF03186 CobD/Cbib protein EML485_12110 PF00155 Aminotransferase class I and II EML485_12115 PF13378 Enolase C-terminal domain-like EML485_12115 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_12120 PF05336 L-rhamnose mutarotase EML485_12125 PF01232 Mannitol dehydrogenase Rossmann domain EML485_12125 PF08125 Mannitol dehydrogenase C-terminal domain EML485_12130 PF08240 Alcohol dehydrogenase GroES-like domain EML485_12130 PF00107 Zinc-binding dehydrogenase EML485_12140 PF00248 Aldo/keto reductase family EML485_12150 PF02653 Branched-chain amino acid transport system / permease component EML485_12155 PF00005 ABC transporter EML485_12160 PF00392 Bacterial regulatory proteins, gntR family EML485_12160 PF07729 FCD domain EML485_12165 PF08666 SAF domain EML485_12165 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EML485_12170 PF02142 MGS-like domain EML485_12170 PF01808 AICARFT/IMPCHase bienzyme EML485_12180 PF01029 NusB family EML485_12180 PF01189 16S rRNA methyltransferase RsmB/F EML485_12185 PF01435 Peptidase family M48 EML485_12195 PF17762 HTH domain found in ParB protein EML485_12195 PF02195 ParB-like nuclease domain EML485_12200 PF13614 AAA domain EML485_12205 PF02527 rRNA small subunit methyltransferase G EML485_12210 PF01134 Glucose inhibited division protein A EML485_12210 PF13932 GidA associated domain EML485_12215 PF01926 50S ribosome-binding GTPase EML485_12215 PF12631 MnmE helical domain EML485_12215 PF10396 GTP-binding protein TrmE N-terminus EML485_12220 PF07498 Rho termination factor, N-terminal domain EML485_12220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain EML485_12220 PF07497 Rho termination factor, RNA-binding domain EML485_12225 PF03653 Uncharacterised protein family (UPF0093) EML485_12230 PF01208 Uroporphyrinogen decarboxylase (URO-D) EML485_12235 PF03618 Kinase/pyrophosphorylase EML485_12240 PF02545 Maf-like protein EML485_12245 PF08501 Shikimate dehydrogenase substrate binding domain EML485_12245 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML485_12245 PF01488 Shikimate / quinate 5-dehydrogenase EML485_12250 PF01121 Dephospho-CoA kinase EML485_12255 PF00929 Exonuclease EML485_12260 PF02556 Preprotein translocase subunit SecB EML485_12265 PF04186 FxsA cytoplasmic membrane protein EML485_12275 PF06725 3D domain EML485_12275 PF03562 MltA specific insert domain EML485_12290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_12290 PF01751 Toprim domain EML485_12290 PF00986 DNA gyrase B subunit, carboxyl terminus EML485_12290 PF00204 DNA gyrase B EML485_12300 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML485_12315 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase EML485_12320 PF00291 Pyridoxal-phosphate dependent enzyme EML485_12325 PF00290 Tryptophan synthase alpha chain EML485_12330 PF01039 Carboxyl transferase domain EML485_12335 PF08245 Mur ligase middle domain EML485_12335 PF02875 Mur ligase family, glutamate ligase domain EML485_12340 PF00085 Thioredoxin EML485_12345 PF13361 UvrD-like helicase C-terminal domain EML485_12345 PF00580 UvrD/REP helicase N-terminal domain EML485_12345 PF12705 PD-(D/E)XK nuclease superfamily EML485_12355 PF12804 MobA-like NTP transferase domain EML485_12360 PF01636 Phosphotransferase enzyme family EML485_12365 PF00512 His Kinase A (phospho-acceptor) domain EML485_12365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_12370 PF05221 S-adenosyl-L-homocysteine hydrolase EML485_12370 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain EML485_12375 PF00381 PTS HPr component phosphorylation site EML485_12380 PF03830 PTS system sorbose subfamily IIB component EML485_12380 PF03610 PTS system fructose IIA component EML485_12385 PF07475 HPr Serine kinase C-terminal domain EML485_12385 PF02603 HPr Serine kinase N terminus EML485_12390 PF00672 HAMP domain EML485_12390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_12390 PF00512 His Kinase A (phospho-acceptor) domain EML485_12390 PF13755 Sensor N-terminal transmembrane domain EML485_12390 PF13756 Stimulus-sensing domain EML485_12395 PF00486 Transcriptional regulatory protein, C terminal EML485_12395 PF00072 Response regulator receiver domain EML485_12400 PF01293 Phosphoenolpyruvate carboxykinase EML485_12405 PF00472 RF-1 domain EML485_12410 PF00485 Phosphoribulokinase / Uridine kinase family EML485_12415 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase EML485_12420 PF00977 Histidine biosynthesis protein EML485_12425 PF00977 Histidine biosynthesis protein EML485_12430 PF00117 Glutamine amidotransferase class-I EML485_12440 PF00475 Imidazoleglycerol-phosphate dehydratase EML485_12445 PF00227 Proteasome subunit EML485_12450 PF10431 C-terminal, D2-small domain, of ClpB protein EML485_12450 PF07724 AAA domain (Cdc48 subfamily) EML485_12450 PF00004 ATPase family associated with various cellular activities (AAA) EML485_12460 PF01274 Malate synthase EML485_12475 PF00072 Response regulator receiver domain EML485_12480 PF00512 His Kinase A (phospho-acceptor) domain EML485_12480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_12485 PF00270 DEAD/DEAH box helicase EML485_12485 PF00271 Helicase conserved C-terminal domain EML485_12485 PF08482 ATP-dependent helicase C-terminal EML485_12485 PF04408 Helicase associated domain (HA2) EML485_12520 PF16124 RecQ zinc-binding EML485_12520 PF00271 Helicase conserved C-terminal domain EML485_12520 PF09382 RQC domain EML485_12520 PF00270 DEAD/DEAH box helicase EML485_12520 PF00570 HRDC domain EML485_12530 PF13407 Periplasmic binding protein domain EML485_12535 PF02653 Branched-chain amino acid transport system / permease component EML485_12540 PF00005 ABC transporter EML485_12545 PF00485 Phosphoribulokinase / Uridine kinase family EML485_12550 PF00462 Glutaredoxin EML485_12555 PF07972 NrdI Flavodoxin like EML485_12560 PF00317 Ribonucleotide reductase, all-alpha domain EML485_12560 PF02867 Ribonucleotide reductase, barrel domain EML485_12560 PF08343 Ribonucleotide reductase N-terminal EML485_12565 PF00268 Ribonucleotide reductase, small chain EML485_12575 PF02463 RecF/RecN/SMC N terminal domain EML485_12580 PF00899 ThiF family EML485_12580 PF00581 Rhodanese-like domain EML485_12595 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_12595 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_12605 PF00294 pfkB family carbohydrate kinase EML485_12615 PF05175 Methyltransferase small domain EML485_12615 PF08468 Methyltransferase small domain N-terminal EML485_12620 PF00013 KH domain EML485_12620 PF03725 3' exoribonuclease family, domain 2 EML485_12620 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain EML485_12620 PF00575 S1 RNA binding domain EML485_12620 PF01138 3' exoribonuclease family, domain 1 EML485_12625 PF00312 Ribosomal protein S15 EML485_12630 PF09157 Pseudouridine synthase II TruB, C-terminal EML485_12630 PF01509 TruB family pseudouridylate synthase (N terminal domain) EML485_12630 PF16198 tRNA pseudouridylate synthase B C-terminal domain EML485_12635 PF02033 Ribosome-binding factor A EML485_12640 PF04760 Translation initiation factor IF-2, N-terminal region EML485_12640 PF08364 Bacterial translation initiation factor IF-2 associated region EML485_12640 PF03144 Elongation factor Tu domain 2 EML485_12640 PF00009 Elongation factor Tu GTP binding domain EML485_12640 PF11987 Translation-initiation factor 2 EML485_12650 PF00575 S1 RNA binding domain EML485_12650 PF08529 NusA N-terminal domain EML485_12650 PF13184 NusA-like KH domain EML485_12655 PF02576 RimP N-terminal domain EML485_12655 PF17384 RimP C-terminal SH3 domain EML485_12660 PF05977 Transmembrane secretion effector EML485_12665 PF13406 Transglycosylase SLT domain EML485_12670 PF02132 RecR protein EML485_12670 PF13662 Toprim domain EML485_12680 PF02575 YbaB/EbfC DNA-binding family EML485_12685 PF12169 DNA polymerase III subunits gamma and tau domain III EML485_12685 PF12170 DNA polymerase III tau subunit V interacting with alpha EML485_12685 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding EML485_12700 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain EML485_12700 PF09297 NADH pyrophosphatase zinc ribbon domain EML485_12700 PF00293 NUDIX domain EML485_12705 PF01817 Chorismate mutase type II EML485_12705 PF00800 Prephenate dehydratase EML485_12710 PF02348 Cytidylyltransferase EML485_12715 PF00034 Cytochrome c EML485_12720 PF02397 Bacterial sugar transferase EML485_12725 PF00905 Penicillin binding protein transpeptidase domain EML485_12725 PF00912 Transglycosylase EML485_12730 PF04073 Aminoacyl-tRNA editing domain EML485_12735 PF00313 'Cold-shock' DNA-binding domain EML485_12740 PF07687 Peptidase dimerisation domain EML485_12740 PF01546 Peptidase family M20/M25/M40 EML485_12745 PF01047 MarR family EML485_12755 PF01612 3'-5' exonuclease EML485_12755 PF01367 5'-3' exonuclease, C-terminal SAM fold EML485_12755 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain EML485_12755 PF00476 DNA polymerase family A EML485_12765 PF01783 Ribosomal L32p protein family EML485_12770 PF00512 His Kinase A (phospho-acceptor) domain EML485_12770 PF02743 Cache domain EML485_12770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_12775 PF00158 Sigma-54 interaction domain EML485_12775 PF00072 Response regulator receiver domain EML485_12775 PF02954 Bacterial regulatory protein, Fis family EML485_12780 PF03401 Tripartite tricarboxylate transporter family receptor EML485_12785 PF07331 Tripartite tricarboxylate transporter TctB family EML485_12790 PF01970 Tripartite tricarboxylate transporter TctA family EML485_12795 PF04102 SlyX EML485_12805 PF01556 DnaJ C terminal domain EML485_12805 PF00226 DnaJ domain EML485_12805 PF00684 DnaJ central domain EML485_12810 PF00012 Hsp70 protein EML485_12825 PF01625 Peptide methionine sulfoxide reductase EML485_12830 PF02608 ABC transporter substrate-binding protein PnrA-like EML485_12835 PF00005 ABC transporter EML485_12840 PF02653 Branched-chain amino acid transport system / permease component EML485_12845 PF02653 Branched-chain amino acid transport system / permease component EML485_12850 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region EML485_12855 PF01048 Phosphorylase superfamily EML485_12860 PF01791 DeoC/LacD family aldolase EML485_12865 PF02885 Glycosyl transferase family, helical bundle domain EML485_12865 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain EML485_12865 PF00591 Glycosyl transferase family, a/b domain EML485_12880 PF00962 Adenosine/AMP deaminase EML485_12885 PF01676 Metalloenzyme superfamily EML485_12895 PF03626 Prokaryotic Cytochrome C oxidase subunit IV EML485_12900 PF00510 Cytochrome c oxidase subunit III EML485_12905 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML485_12910 PF00116 Cytochrome C oxidase subunit II, periplasmic domain EML485_12910 PF06481 COX Aromatic Rich Motif EML485_12915 PF07690 Major Facilitator Superfamily EML485_12915 PF00083 Sugar (and other) transporter EML485_12920 PF01493 GXGXG motif EML485_12920 PF04898 Glutamate synthase central domain EML485_12920 PF00310 Glutamine amidotransferases class-II EML485_12920 PF01645 Conserved region in glutamate synthase EML485_12925 PF00667 FAD binding domain EML485_12925 PF00175 Oxidoreductase NAD-binding domain EML485_12925 PF00258 Flavodoxin EML485_12945 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_12945 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_12950 PF07977 FabA-like domain EML485_12960 PF03458 UPF0126 domain EML485_12970 PF06912 Protein of unknown function (DUF1275) EML485_12980 PF00528 Binding-protein-dependent transport system inner membrane component EML485_12985 PF00005 ABC transporter EML485_12990 PF07702 UTRA domain EML485_12990 PF00392 Bacterial regulatory proteins, gntR family EML485_12995 PF01618 MotA/TolQ/ExbB proton channel family EML485_13000 PF02472 Biopolymer transport protein ExbD/TolR EML485_13010 PF02615 Malate/L-lactate dehydrogenase EML485_13025 PF00625 Guanylate kinase EML485_13030 PF07969 Amidohydrolase family EML485_13035 PF06299 Protein of unknown function (DUF1045) EML485_13040 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13045 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13055 PF00005 ABC transporter EML485_13065 PF00005 ABC transporter EML485_13070 PF00005 ABC transporter EML485_13075 PF06007 Phosphonate metabolism protein PhnJ EML485_13080 PF05861 Bacterial phosphonate metabolism protein (PhnI) EML485_13085 PF05845 Bacterial phosphonate metabolism protein (PhnH) EML485_13090 PF06754 Phosphonate metabolism protein PhnG EML485_13095 PF00392 Bacterial regulatory proteins, gntR family EML485_13095 PF07702 UTRA domain EML485_13100 PF05173 Dihydrodipicolinate reductase, C-terminus EML485_13100 PF01113 Dihydrodipicolinate reductase, N-terminus EML485_13105 PF02685 Glucokinase EML485_13110 PF02142 MGS-like domain EML485_13115 PF03411 Penicillin-insensitive murein endopeptidase EML485_13120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_13125 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13130 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13130 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_13135 PF00005 ABC transporter EML485_13135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_13145 PF00120 Glutamine synthetase, catalytic domain EML485_13150 PF01266 FAD dependent oxidoreductase EML485_13160 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13165 PF00005 ABC transporter EML485_13170 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13175 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML485_13185 PF02082 Transcriptional regulator EML485_13190 PF13416 Bacterial extracellular solute-binding protein EML485_13200 PF05987 Bacterial protein of unknown function (DUF898) EML485_13205 PF00171 Aldehyde dehydrogenase family EML485_13215 PF03466 LysR substrate binding domain EML485_13215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_13220 PF00892 EamA-like transporter family EML485_13235 PF00877 NlpC/P60 family EML485_13245 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family EML485_13245 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain EML485_13250 PF00883 Cytosol aminopeptidase family, catalytic domain EML485_13250 PF02789 Cytosol aminopeptidase family, N-terminal domain EML485_13270 PF00437 Type II/IV secretion system protein EML485_13285 PF13629 Pilus formation protein N terminal region EML485_13285 PF04972 BON domain EML485_13285 PF00263 Bacterial type II and III secretion system protein EML485_13330 PF07411 Domain of unknown function (DUF1508) EML485_13335 PF01183 Glycosyl hydrolases family 25 EML485_13340 PF00892 EamA-like transporter family EML485_13345 PF00392 Bacterial regulatory proteins, gntR family EML485_13345 PF00155 Aminotransferase class I and II EML485_13375 PF00679 Elongation factor G C-terminus EML485_13375 PF00009 Elongation factor Tu GTP binding domain EML485_13375 PF06421 GTP-binding protein LepA C-terminus EML485_13375 PF03144 Elongation factor Tu domain 2 EML485_13380 PF00795 Carbon-nitrogen hydrolase EML485_13410 PF12833 Helix-turn-helix domain EML485_13410 PF02311 AraC-like ligand binding domain EML485_13415 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_13440 PF05198 Translation initiation factor IF-3, N-terminal domain EML485_13440 PF00707 Translation initiation factor IF-3, C-terminal domain EML485_13445 PF01632 Ribosomal protein L35 EML485_13450 PF00453 Ribosomal protein L20 EML485_13460 PF01409 tRNA synthetases class II core domain (F) EML485_13460 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain EML485_13465 PF03147 Ferredoxin-fold anticodon binding domain EML485_13465 PF01588 Putative tRNA binding domain EML485_13465 PF03483 B3/4 domain EML485_13465 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain EML485_13465 PF03484 tRNA synthetase B5 domain EML485_13470 PF00248 Aldo/keto reductase family EML485_13475 PF03466 LysR substrate binding domain EML485_13475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_13485 PF00248 Aldo/keto reductase family EML485_13490 PF01965 DJ-1/PfpI family EML485_13490 PF12833 Helix-turn-helix domain EML485_13500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_13500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_13515 PF02601 Exonuclease VII, large subunit EML485_13515 PF13742 OB-fold nucleic acid binding domain EML485_13520 PF13378 Enolase C-terminal domain-like EML485_13520 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_13525 PF00392 Bacterial regulatory proteins, gntR family EML485_13525 PF07729 FCD domain EML485_13530 PF01047 MarR family EML485_13535 PF00892 EamA-like transporter family EML485_13540 PF02073 Thermophilic metalloprotease (M29) EML485_13545 PF04073 Aminoacyl-tRNA editing domain EML485_13550 PF03960 ArsC family EML485_13565 PF00440 Bacterial regulatory proteins, tetR family EML485_13575 PF00117 Glutamine amidotransferase class-I EML485_13575 PF00958 GMP synthase C terminal domain EML485_13590 PF03073 TspO/MBR family EML485_13615 PF01189 16S rRNA methyltransferase RsmB/F EML485_13615 PF01029 NusB family EML485_13620 PF03330 Lytic transglycolase EML485_13630 PF08331 Domain of unknown function (DUF1730) EML485_13635 PF13417 Glutathione S-transferase, N-terminal domain EML485_13635 PF00043 Glutathione S-transferase, C-terminal domain EML485_13640 PF02673 Bacitracin resistance protein BacA EML485_13660 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family EML485_13670 PF00398 Ribosomal RNA adenine dimethylase EML485_13675 PF02768 DNA polymerase III beta subunit, C-terminal domain EML485_13675 PF00712 DNA polymerase III beta subunit, N-terminal domain EML485_13675 PF02767 DNA polymerase III beta subunit, central domain EML485_13680 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_13685 PF02021 Uncharacterised protein family UPF0102 EML485_13690 PF12464 Maltose acetyltransferase EML485_13690 PF14602 Hexapeptide repeat of succinyl-transferase EML485_13695 PF13416 Bacterial extracellular solute-binding protein EML485_13700 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13705 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13710 PF00005 ABC transporter EML485_13720 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EML485_13720 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EML485_13725 PF13335 Magnesium chelatase, subunit ChlI C-terminal EML485_13725 PF01078 Magnesium chelatase, subunit ChlI EML485_13730 PF00291 Pyridoxal-phosphate dependent enzyme EML485_13735 PF01810 LysE type translocator EML485_13740 PF00692 dUTPase EML485_13745 PF00009 Elongation factor Tu GTP binding domain EML485_13745 PF16658 Class II release factor RF3, C-terminal domain EML485_13745 PF03144 Elongation factor Tu domain 2 EML485_13750 PF02441 Flavoprotein EML485_13750 PF04127 DNA / pantothenate metabolism flavoprotein EML485_13765 PF03109 ABC1 family EML485_13770 PF01209 ubiE/COQ5 methyltransferase family EML485_13775 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain EML485_13775 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain EML485_13775 PF06827 Zinc finger found in FPG and IleRS EML485_13780 PF00378 Enoyl-CoA hydratase/isomerase EML485_13785 PF01649 Ribosomal protein S20 EML485_13815 PF01757 Acyltransferase family EML485_13865 PF07729 FCD domain EML485_13865 PF00392 Bacterial regulatory proteins, gntR family EML485_13870 PF00005 ABC transporter EML485_13870 PF17912 MalK OB fold domain EML485_13875 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13880 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13885 PF01547 Bacterial extracellular solute-binding protein EML485_13905 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_13905 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_13915 PF13378 Enolase C-terminal domain-like EML485_13915 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_13945 PF00196 Bacterial regulatory proteins, luxR family EML485_13945 PF00072 Response regulator receiver domain EML485_13950 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13955 PF00528 Binding-protein-dependent transport system inner membrane component EML485_13955 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_13960 PF00005 ABC transporter EML485_13960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_13975 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_13990 PF01112 Asparaginase EML485_14000 PF01266 FAD dependent oxidoreductase EML485_14005 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14005 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_14010 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14015 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_14020 PF01266 FAD dependent oxidoreductase EML485_14025 PF00106 short chain dehydrogenase EML485_14025 PF00300 Histidine phosphatase superfamily (branch 1) EML485_14035 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_14035 PF00005 ABC transporter EML485_14050 PF07238 PilZ domain EML485_14050 PF00535 Glycosyl transferase family 2 EML485_14050 PF03552 Cellulose synthase EML485_14060 PF00999 Sodium/hydrogen exchanger family EML485_14065 PF00005 ABC transporter EML485_14065 PF06472 ABC transporter transmembrane region 2 EML485_14070 PF00990 Diguanylate cyclase, GGDEF domain EML485_14075 PF00356 Bacterial regulatory proteins, lacI family EML485_14085 PF00005 ABC transporter EML485_14090 PF02653 Branched-chain amino acid transport system / permease component EML485_14095 PF02126 Phosphotriesterase family EML485_14105 PF00294 pfkB family carbohydrate kinase EML485_14115 PF07687 Peptidase dimerisation domain EML485_14115 PF01546 Peptidase family M20/M25/M40 EML485_14125 PF00668 Condensation domain EML485_14125 PF13193 AMP-binding enzyme C-terminal domain EML485_14125 PF00550 Phosphopantetheine attachment site EML485_14125 PF00975 Thioesterase domain EML485_14125 PF00501 AMP-binding enzyme EML485_14130 PF01177 Asp/Glu/Hydantoin racemase EML485_14140 PF00440 Bacterial regulatory proteins, tetR family EML485_14145 PF00860 Permease family EML485_14150 PF00144 Beta-lactamase EML485_14155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_14155 PF03466 LysR substrate binding domain EML485_14185 PF08281 Sigma-70, region 4 EML485_14185 PF04542 Sigma-70 region 2 EML485_14190 PF01177 Asp/Glu/Hydantoin racemase EML485_14195 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14200 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14210 PF08402 TOBE domain EML485_14210 PF00005 ABC transporter EML485_14235 PF13426 PAS domain EML485_14235 PF08447 PAS fold EML485_14235 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_14245 PF13416 Bacterial extracellular solute-binding protein EML485_14250 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14255 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14260 PF17912 MalK OB fold domain EML485_14260 PF00005 ABC transporter EML485_14265 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14270 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14280 PF00005 ABC transporter EML485_14280 PF17912 MalK OB fold domain EML485_14285 PF06964 Alpha-L-arabinofuranosidase C-terminal domain EML485_14300 PF00356 Bacterial regulatory proteins, lacI family EML485_14310 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_14310 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_14315 PF01261 Xylose isomerase-like TIM barrel EML485_14320 PF00005 ABC transporter EML485_14320 PF17912 MalK OB fold domain EML485_14320 PF03459 TOBE domain EML485_14325 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14330 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14335 PF13416 Bacterial extracellular solute-binding protein EML485_14340 PF17938 Tetracyclin repressor-like, C-terminal domain EML485_14340 PF00440 Bacterial regulatory proteins, tetR family EML485_14345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_14345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_14360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_14360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_14370 PF00313 'Cold-shock' DNA-binding domain EML485_14380 PF01165 Ribosomal protein S21 EML485_14405 PF07470 Glycosyl Hydrolase Family 88 EML485_14410 PF00295 Glycosyl hydrolases family 28 EML485_14420 PF00005 ABC transporter EML485_14420 PF08402 TOBE domain EML485_14425 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14430 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14435 PF12833 Helix-turn-helix domain EML485_14435 PF02311 AraC-like ligand binding domain EML485_14440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_14450 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_14455 PF04909 Amidohydrolase EML485_14460 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_14460 PF13378 Enolase C-terminal domain-like EML485_14465 PF00701 Dihydrodipicolinate synthetase family EML485_14475 PF04962 KduI/IolB family EML485_14480 PF01370 NAD dependent epimerase/dehydratase family EML485_14485 PF00392 Bacterial regulatory proteins, gntR family EML485_14485 PF07729 FCD domain EML485_14495 PF01321 Creatinase/Prolidase N-terminal domain EML485_14495 PF00557 Metallopeptidase family M24 EML485_14500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_14500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_14505 PF17912 MalK OB fold domain EML485_14505 PF00005 ABC transporter EML485_14510 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14515 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14520 PF13416 Bacterial extracellular solute-binding protein EML485_14530 PF12833 Helix-turn-helix domain EML485_14530 PF02311 AraC-like ligand binding domain EML485_14535 PF07690 Major Facilitator Superfamily EML485_14540 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_14540 PF03466 LysR substrate binding domain EML485_14545 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_14555 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_14560 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_14560 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML485_14575 PF00356 Bacterial regulatory proteins, lacI family EML485_14580 PF08240 Alcohol dehydrogenase GroES-like domain EML485_14580 PF16912 Glucose dehydrogenase C-terminus EML485_14595 PF00294 pfkB family carbohydrate kinase EML485_14600 PF08013 Tagatose 6 phosphate kinase EML485_14605 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14610 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14615 PF08402 TOBE domain EML485_14615 PF00005 ABC transporter EML485_14620 PF00005 ABC transporter EML485_14620 PF17912 MalK OB fold domain EML485_14625 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14630 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14635 PF01547 Bacterial extracellular solute-binding protein EML485_14640 PF01053 Cys/Met metabolism PLP-dependent enzyme EML485_14655 PF01297 Zinc-uptake complex component A periplasmic EML485_14660 PF00950 ABC 3 transport family EML485_14665 PF00005 ABC transporter EML485_14670 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML485_14670 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_14685 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_14685 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML485_14690 PF13416 Bacterial extracellular solute-binding protein EML485_14695 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14700 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14705 PF00005 ABC transporter EML485_14705 PF08402 TOBE domain EML485_14720 PF03922 OmpW family EML485_14740 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML485_14740 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML485_14745 PF03466 LysR substrate binding domain EML485_14745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_14750 PF13407 Periplasmic binding protein domain EML485_14755 PF02653 Branched-chain amino acid transport system / permease component EML485_14760 PF00005 ABC transporter EML485_14765 PF00440 Bacterial regulatory proteins, tetR family EML485_14765 PF08361 MAATS-type transcriptional repressor, C-terminal region EML485_14770 PF00873 AcrB/AcrD/AcrF family EML485_14775 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_14775 PF00529 HlyD membrane-fusion protein of T1SS EML485_14780 PF13426 PAS domain EML485_14780 PF08448 PAS fold EML485_14780 PF00563 EAL domain EML485_14780 PF08447 PAS fold EML485_14780 PF05231 MASE1 EML485_14780 PF00990 Diguanylate cyclase, GGDEF domain EML485_14785 PF07883 Cupin domain EML485_14785 PF05899 Protein of unknown function (DUF861) EML485_14795 PF00563 EAL domain EML485_14795 PF08448 PAS fold EML485_14795 PF08447 PAS fold EML485_14795 PF00990 Diguanylate cyclase, GGDEF domain EML485_14800 PF02615 Malate/L-lactate dehydrogenase EML485_14805 PF09397 Ftsk gamma domain EML485_14805 PF13491 4TM region of DNA translocase FtsK/SpoIIIE EML485_14805 PF01580 FtsK/SpoIIIE family EML485_14805 PF17854 FtsK alpha domain EML485_14815 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_14820 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14825 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14830 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_14830 PF00005 ABC transporter EML485_14835 PF00005 ABC transporter EML485_14835 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_14840 PF00266 Aminotransferase class-V EML485_14850 PF00920 Dehydratase family EML485_14860 PF13407 Periplasmic binding protein domain EML485_14865 PF00005 ABC transporter EML485_14870 PF02653 Branched-chain amino acid transport system / permease component EML485_14875 PF02653 Branched-chain amino acid transport system / permease component EML485_14880 PF00392 Bacterial regulatory proteins, gntR family EML485_14880 PF07729 FCD domain EML485_14890 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML485_14890 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML485_14890 PF01336 OB-fold nucleic acid binding domain EML485_14890 PF14579 Helix-hairpin-helix motif EML485_14890 PF02811 PHP domain EML485_14910 PF13660 Domain of unknown function (DUF4147) EML485_14910 PF05161 MOFRL family EML485_14920 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_14920 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_14930 PF00005 ABC transporter EML485_14930 PF17912 MalK OB fold domain EML485_14930 PF03459 TOBE domain EML485_14935 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14940 PF00528 Binding-protein-dependent transport system inner membrane component EML485_14945 PF01547 Bacterial extracellular solute-binding protein EML485_14955 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_14965 PF01425 Amidase EML485_14970 PF08448 PAS fold EML485_14970 PF00563 EAL domain EML485_14970 PF08447 PAS fold EML485_14970 PF00990 Diguanylate cyclase, GGDEF domain EML485_14975 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_14985 PF03776 Septum formation topological specificity factor MinE EML485_14990 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML485_14995 PF03775 Septum formation inhibitor MinC, C-terminal domain EML485_14995 PF05209 Septum formation inhibitor MinC, N-terminal domain EML485_15000 PF13419 Haloacid dehalogenase-like hydrolase EML485_15005 PF07729 FCD domain EML485_15005 PF00392 Bacterial regulatory proteins, gntR family EML485_15010 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_15020 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_15025 PF00107 Zinc-binding dehydrogenase EML485_15025 PF08240 Alcohol dehydrogenase GroES-like domain EML485_15030 PF03786 D-mannonate dehydratase (UxuA) EML485_15040 PF00171 Aldehyde dehydrogenase family EML485_15045 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_15050 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_15055 PF00005 ABC transporter EML485_15055 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15060 PF03841 L-seryl-tRNA selenium transferase EML485_15075 PF01979 Amidohydrolase family EML485_15080 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_15080 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15085 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15090 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15095 PF13439 Glycosyltransferase Family 4 EML485_15095 PF00534 Glycosyl transferases group 1 EML485_15100 PF02563 Polysaccharide biosynthesis/export protein EML485_15105 PF13533 Biotin-lipoyl like EML485_15110 PF00873 AcrB/AcrD/AcrF family EML485_15120 PF13018 Extended Signal Peptide of Type V secretion system EML485_15125 PF01613 Flavin reductase like domain EML485_15130 PF00248 Aldo/keto reductase family EML485_15135 PF00296 Luciferase-like monooxygenase EML485_15145 PF00005 ABC transporter EML485_15145 PF08402 TOBE domain EML485_15150 PF01547 Bacterial extracellular solute-binding protein EML485_15155 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15160 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15165 PF01055 Glycosyl hydrolases family 31 EML485_15170 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15175 PF09084 NMT1/THI5 like EML485_15180 PF02110 Hydroxyethylthiazole kinase family EML485_15185 PF02581 Thiamine monophosphate synthase EML485_15190 PF08543 Phosphomethylpyrimidine kinase EML485_15195 PF01037 Lrp/AsnC ligand binding domain EML485_15200 PF01168 Alanine racemase, N-terminal domain EML485_15200 PF00842 Alanine racemase, C-terminal domain EML485_15205 PF01266 FAD dependent oxidoreductase EML485_15220 PF02954 Bacterial regulatory protein, Fis family EML485_15220 PF00072 Response regulator receiver domain EML485_15220 PF00158 Sigma-54 interaction domain EML485_15225 PF02743 Cache domain EML485_15225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_15225 PF00512 His Kinase A (phospho-acceptor) domain EML485_15230 PF00375 Sodium:dicarboxylate symporter family EML485_15235 PF00892 EamA-like transporter family EML485_15240 PF00202 Aminotransferase class-III EML485_15255 PF01546 Peptidase family M20/M25/M40 EML485_15255 PF07687 Peptidase dimerisation domain EML485_15265 PF01270 Glycosyl hydrolases family 8 EML485_15275 PF03552 Cellulose synthase EML485_15275 PF00535 Glycosyl transferase family 2 EML485_15275 PF07238 PilZ domain EML485_15305 PF16363 GDP-mannose 4,6 dehydratase EML485_15310 PF16363 GDP-mannose 4,6 dehydratase EML485_15320 PF00196 Bacterial regulatory proteins, luxR family EML485_15320 PF00072 Response regulator receiver domain EML485_15335 PF00005 ABC transporter EML485_15335 PF00664 ABC transporter transmembrane region EML485_15340 PF00529 HlyD membrane-fusion protein of T1SS EML485_15355 PF02563 Polysaccharide biosynthesis/export protein EML485_15360 PF02397 Bacterial sugar transferase EML485_15370 PF00202 Aminotransferase class-III EML485_15375 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_15375 PF00672 HAMP domain EML485_15380 PF17969 L,D-transpeptidase C-terminal domain EML485_15380 PF01476 LysM domain EML485_15380 PF03734 L,D-transpeptidase catalytic domain EML485_15400 PF02245 Methylpurine-DNA glycosylase (MPG) EML485_15415 PF00356 Bacterial regulatory proteins, lacI family EML485_15420 PF01547 Bacterial extracellular solute-binding protein EML485_15425 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15430 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15435 PF03459 TOBE domain EML485_15435 PF17912 MalK OB fold domain EML485_15435 PF00005 ABC transporter EML485_15445 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_15445 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_15450 PF04055 Radical SAM superfamily EML485_15455 PF01242 6-pyruvoyl tetrahydropterin synthase EML485_15460 PF06508 Queuosine biosynthesis protein QueC EML485_15465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_15465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_15475 PF00005 ABC transporter EML485_15475 PF17912 MalK OB fold domain EML485_15480 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15485 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15490 PF01547 Bacterial extracellular solute-binding protein EML485_15495 PF00483 Nucleotidyl transferase EML485_15495 PF01050 Mannose-6-phosphate isomerase EML485_15500 PF01011 PQQ enzyme repeat EML485_15505 PF03466 LysR substrate binding domain EML485_15505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_15510 PF01515 Phosphate acetyl/butaryl transferase EML485_15510 PF03949 Malic enzyme, NAD binding domain EML485_15510 PF00390 Malic enzyme, N-terminal domain EML485_15515 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_15520 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15525 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15530 PF00005 ABC transporter EML485_15535 PF03972 MmgE/PrpD family EML485_15540 PF00296 Luciferase-like monooxygenase EML485_15545 PF08447 PAS fold EML485_15545 PF13426 PAS domain EML485_15545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_15550 PF01266 FAD dependent oxidoreductase EML485_15565 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML485_15570 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_15575 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_15580 PF07722 Peptidase C26 EML485_15585 PF02653 Branched-chain amino acid transport system / permease component EML485_15590 PF00005 ABC transporter EML485_15595 PF13407 Periplasmic binding protein domain EML485_15600 PF01546 Peptidase family M20/M25/M40 EML485_15605 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15615 PF00005 ABC transporter EML485_15620 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_15620 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15625 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_15630 PF03466 LysR substrate binding domain EML485_15635 PF00529 HlyD membrane-fusion protein of T1SS EML485_15635 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_15640 PF00005 ABC transporter EML485_15640 PF00664 ABC transporter transmembrane region EML485_15660 PF12680 SnoaL-like domain EML485_15660 PF08281 Sigma-70, region 4 EML485_15660 PF04542 Sigma-70 region 2 EML485_15665 PF00005 ABC transporter EML485_15670 PF01032 FecCD transport family EML485_15685 PF01209 ubiE/COQ5 methyltransferase family EML485_15690 PF00127 Copper binding proteins, plastocyanin/azurin family EML485_15695 PF00005 ABC transporter EML485_15700 PF01032 FecCD transport family EML485_15715 PF07687 Peptidase dimerisation domain EML485_15715 PF01546 Peptidase family M20/M25/M40 EML485_15720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_15730 PF00171 Aldehyde dehydrogenase family EML485_15735 PF00180 Isocitrate/isopropylmalate dehydrogenase EML485_15740 PF00171 Aldehyde dehydrogenase family EML485_15745 PF01266 FAD dependent oxidoreductase EML485_15760 PF00202 Aminotransferase class-III EML485_15770 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15775 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15780 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_15780 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15785 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15785 PF00005 ABC transporter EML485_15790 PF01037 Lrp/AsnC ligand binding domain EML485_15795 PF01266 FAD dependent oxidoreductase EML485_15805 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_15810 PF00005 ABC transporter EML485_15820 PF07687 Peptidase dimerisation domain EML485_15820 PF01546 Peptidase family M20/M25/M40 EML485_15825 PF00296 Luciferase-like monooxygenase EML485_15830 PF00296 Luciferase-like monooxygenase EML485_15835 PF02082 Transcriptional regulator EML485_15845 PF01613 Flavin reductase like domain EML485_15850 PF00296 Luciferase-like monooxygenase EML485_15865 PF00296 Luciferase-like monooxygenase EML485_15870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_15870 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_15870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_15880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15885 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15890 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15895 PF00005 ABC transporter EML485_15895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15900 PF00005 ABC transporter EML485_15900 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15905 PF00248 Aldo/keto reductase family EML485_15910 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML485_15910 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_15915 PF03466 LysR substrate binding domain EML485_15915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_15920 PF00296 Luciferase-like monooxygenase EML485_15935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15940 PF07687 Peptidase dimerisation domain EML485_15940 PF01546 Peptidase family M20/M25/M40 EML485_15945 PF00296 Luciferase-like monooxygenase EML485_15950 PF05368 NmrA-like family EML485_15960 PF00296 Luciferase-like monooxygenase EML485_15965 PF00296 Luciferase-like monooxygenase EML485_15970 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_15970 PF13378 Enolase C-terminal domain-like EML485_15980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_15985 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15985 PF00005 ABC transporter EML485_15990 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_15990 PF00005 ABC transporter EML485_15995 PF00528 Binding-protein-dependent transport system inner membrane component EML485_15995 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_16000 PF00528 Binding-protein-dependent transport system inner membrane component EML485_16010 PF07729 FCD domain EML485_16010 PF00392 Bacterial regulatory proteins, gntR family EML485_16020 PF00561 alpha/beta hydrolase fold EML485_16035 PF04273 Putative phosphatase (DUF442) EML485_16035 PF00753 Metallo-beta-lactamase superfamily EML485_16045 PF04143 Sulphur transport EML485_16055 PF06415 BPG-independent PGAM N-terminus (iPGM_N) EML485_16055 PF01676 Metalloenzyme superfamily EML485_16060 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) EML485_16060 PF02817 e3 binding domain EML485_16060 PF00364 Biotin-requiring enzyme EML485_16065 PF02780 Transketolase, C-terminal domain EML485_16065 PF02779 Transketolase, pyrimidine binding domain EML485_16070 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal EML485_16070 PF00676 Dehydrogenase E1 component EML485_16075 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_16075 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_16075 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_16080 PF02803 Thiolase, C-terminal domain EML485_16080 PF00108 Thiolase, N-terminal domain EML485_16085 PF01037 Lrp/AsnC ligand binding domain EML485_16090 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_16090 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_16090 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_16095 PF01039 Carboxyl transferase domain EML485_16100 PF02785 Biotin carboxylase C-terminal domain EML485_16100 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_16100 PF00364 Biotin-requiring enzyme EML485_16100 PF00289 Biotin carboxylase, N-terminal domain EML485_16105 PF00682 HMGL-like EML485_16110 PF00378 Enoyl-CoA hydratase/isomerase EML485_16115 PF02569 Pantoate-beta-alanine ligase EML485_16120 PF02548 Ketopantoate hydroxymethyltransferase EML485_16125 PF01261 Xylose isomerase-like TIM barrel EML485_16130 PF00596 Class II Aldolase and Adducin N-terminal domain EML485_16135 PF00455 DeoR C terminal sensor domain EML485_16135 PF08220 DeoR-like helix-turn-helix domain EML485_16140 PF13407 Periplasmic binding protein domain EML485_16145 PF00005 ABC transporter EML485_16150 PF02653 Branched-chain amino acid transport system / permease component EML485_16155 PF02653 Branched-chain amino acid transport system / permease component EML485_16160 PF05336 L-rhamnose mutarotase EML485_16170 PF00561 alpha/beta hydrolase fold EML485_16180 PF08447 PAS fold EML485_16180 PF00990 Diguanylate cyclase, GGDEF domain EML485_16180 PF08448 PAS fold EML485_16180 PF00563 EAL domain EML485_16190 PF00171 Aldehyde dehydrogenase family EML485_16200 PF00005 ABC transporter EML485_16205 PF00528 Binding-protein-dependent transport system inner membrane component EML485_16210 PF00528 Binding-protein-dependent transport system inner membrane component EML485_16235 PF08241 Methyltransferase domain EML485_16245 PF00795 Carbon-nitrogen hydrolase EML485_16250 PF00462 Glutaredoxin EML485_16260 PF08241 Methyltransferase domain EML485_16275 PF00293 NUDIX domain EML485_16280 PF13508 Acetyltransferase (GNAT) domain EML485_16280 PF00583 Acetyltransferase (GNAT) family EML485_16285 PF01960 ArgJ family EML485_16295 PF07517 SecA DEAD-like domain EML485_16295 PF01043 SecA preprotein cross-linking domain EML485_16295 PF02810 SEC-C motif EML485_16295 PF07516 SecA Wing and Scaffold domain EML485_16300 PF00892 EamA-like transporter family EML485_16305 PF01757 Acyltransferase family EML485_16335 PF00248 Aldo/keto reductase family EML485_16340 PF03786 D-mannonate dehydratase (UxuA) EML485_16345 PF08125 Mannitol dehydrogenase C-terminal domain EML485_16345 PF01232 Mannitol dehydrogenase Rossmann domain EML485_16350 PF00106 short chain dehydrogenase EML485_16355 PF00392 Bacterial regulatory proteins, gntR family EML485_16355 PF07729 FCD domain EML485_16365 PF02653 Branched-chain amino acid transport system / permease component EML485_16370 PF02653 Branched-chain amino acid transport system / permease component EML485_16375 PF00005 ABC transporter EML485_16400 PF00149 Calcineurin-like phosphoesterase EML485_16405 PF02733 Dak1 domain EML485_16405 PF02734 DAK2 domain EML485_16410 PF03600 Citrate transporter EML485_16410 PF02080 TrkA-C domain EML485_16430 PF13439 Glycosyltransferase Family 4 EML485_16440 PF01943 Polysaccharide biosynthesis protein EML485_16445 PF00534 Glycosyl transferases group 1 EML485_16445 PF13579 Glycosyl transferase 4-like domain EML485_16465 PF02706 Chain length determinant protein EML485_16465 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML485_16465 PF13807 G-rich domain on putative tyrosine kinase EML485_16485 PF00534 Glycosyl transferases group 1 EML485_16485 PF13439 Glycosyltransferase Family 4 EML485_16490 PF00534 Glycosyl transferases group 1 EML485_16490 PF13439 Glycosyltransferase Family 4 EML485_16505 PF03449 Transcription elongation factor, N-terminal EML485_16505 PF01272 Transcription elongation factor, GreA/GreB, C-term EML485_16510 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) EML485_16510 PF00722 Glycosyl hydrolases family 16 EML485_16540 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding EML485_16555 PF01381 Helix-turn-helix EML485_16565 PF00005 ABC transporter EML485_16570 PF02653 Branched-chain amino acid transport system / permease component EML485_16575 PF13407 Periplasmic binding protein domain EML485_16585 PF01266 FAD dependent oxidoreductase EML485_16585 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML485_16595 PF01642 Methylmalonyl-CoA mutase EML485_16595 PF02310 B12 binding domain EML485_16600 PF00364 Biotin-requiring enzyme EML485_16600 PF02785 Biotin carboxylase C-terminal domain EML485_16600 PF18140 Propionyl-coenzyme A carboxylase BT domain EML485_16600 PF00289 Biotin carboxylase, N-terminal domain EML485_16600 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_16610 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family EML485_16620 PF02798 Glutathione S-transferase, N-terminal domain EML485_16625 PF01039 Carboxyl transferase domain EML485_16630 PF01381 Helix-turn-helix EML485_16630 PF09856 Predicted transcriptional regulator (DUF2083) EML485_16630 PF06114 IrrE N-terminal-like domain EML485_16635 PF12833 Helix-turn-helix domain EML485_16635 PF00730 HhH-GPD superfamily base excision DNA repair protein EML485_16635 PF02805 Metal binding domain of Ada EML485_16635 PF06029 AlkA N-terminal domain EML485_16640 PF00749 tRNA synthetases class I (E and Q), catalytic domain EML485_16650 PF00106 short chain dehydrogenase EML485_16660 PF01923 Cobalamin adenosyltransferase EML485_16670 PF01012 Electron transfer flavoprotein domain EML485_16675 PF00766 Electron transfer flavoprotein FAD-binding domain EML485_16675 PF01012 Electron transfer flavoprotein domain EML485_16680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain EML485_16680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain EML485_16685 PF08534 Redoxin EML485_16690 PF00206 Lyase EML485_16690 PF14698 Argininosuccinate lyase C-terminal EML485_16700 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML485_16700 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain EML485_16710 PF00072 Response regulator receiver domain EML485_16715 PF00156 Phosphoribosyl transferase domain EML485_16725 PF00005 ABC transporter EML485_16745 PF04752 ChaC-like protein EML485_16755 PF02153 Prephenate dehydrogenase EML485_16760 PF00155 Aminotransferase class I and II EML485_16765 PF01209 ubiE/COQ5 methyltransferase family EML485_16770 PF00753 Metallo-beta-lactamase superfamily EML485_16770 PF16123 Hydroxyacylglutathione hydrolase C-terminus EML485_16785 PF00830 Ribosomal L28 family EML485_16790 PF02592 Putative vitamin uptake transporter EML485_16805 PF06213 Cobalamin biosynthesis protein CobT EML485_16805 PF11775 Cobalamin biosynthesis protein CobT VWA domain EML485_16810 PF07728 AAA domain (dynein-related subfamily) EML485_16810 PF08406 CbbQ/NirQ/NorQ C-terminal EML485_16810 PF12556 Cobaltochelatase CobS subunit N terminal EML485_16815 PF00226 DnaJ domain EML485_16820 PF01722 BolA-like protein EML485_16825 PF01761 3-dehydroquinate synthase EML485_16830 PF01202 Shikimate kinase EML485_16840 PF02899 Phage integrase, N-terminal SAM-like domain EML485_16840 PF00589 Phage integrase family EML485_16845 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit EML485_16850 PF03734 L,D-transpeptidase catalytic domain EML485_16855 PF01206 Sulfurtransferase TusA EML485_16855 PF00581 Rhodanese-like domain EML485_16860 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_16860 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML485_16865 PF07943 Penicillin-binding protein 5, C-terminal domain EML485_16865 PF00768 D-alanyl-D-alanine carboxypeptidase EML485_16870 PF01546 Peptidase family M20/M25/M40 EML485_16870 PF07687 Peptidase dimerisation domain EML485_16880 PF01165 Ribosomal protein S21 EML485_16905 PF04717 Type VI secretion system, phage-baseplate injector EML485_16930 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) EML485_16950 PF00583 Acetyltransferase (GNAT) family EML485_16985 PF00561 alpha/beta hydrolase fold EML485_16990 PF00106 short chain dehydrogenase EML485_16995 PF02082 Transcriptional regulator EML485_17000 PF02261 Aspartate decarboxylase EML485_17015 PF00550 Phosphopantetheine attachment site EML485_17015 PF00668 Condensation domain EML485_17015 PF13193 AMP-binding enzyme C-terminal domain EML485_17015 PF00501 AMP-binding enzyme EML485_17025 PF00668 Condensation domain EML485_17025 PF00698 Acyl transferase domain EML485_17025 PF16197 Ketoacyl-synthetase C-terminal extension EML485_17025 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_17025 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_17025 PF00550 Phosphopantetheine attachment site EML485_17030 PF00501 AMP-binding enzyme EML485_17035 PF00668 Condensation domain EML485_17035 PF00550 Phosphopantetheine attachment site EML485_17035 PF00501 AMP-binding enzyme EML485_17035 PF13193 AMP-binding enzyme C-terminal domain EML485_17040 PF13649 Methyltransferase domain EML485_17045 PF13193 AMP-binding enzyme C-terminal domain EML485_17045 PF00202 Aminotransferase class-III EML485_17045 PF00501 AMP-binding enzyme EML485_17045 PF00668 Condensation domain EML485_17045 PF00550 Phosphopantetheine attachment site EML485_17045 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_17045 PF16197 Ketoacyl-synthetase C-terminal extension EML485_17045 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_17065 PF00550 Phosphopantetheine attachment site EML485_17065 PF00698 Acyl transferase domain EML485_17065 PF00668 Condensation domain EML485_17065 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_17065 PF16197 Ketoacyl-synthetase C-terminal extension EML485_17065 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_17070 PF00550 Phosphopantetheine attachment site EML485_17070 PF00668 Condensation domain EML485_17070 PF13193 AMP-binding enzyme C-terminal domain EML485_17070 PF00501 AMP-binding enzyme EML485_17075 PF00668 Condensation domain EML485_17075 PF00550 Phosphopantetheine attachment site EML485_17075 PF13193 AMP-binding enzyme C-terminal domain EML485_17075 PF00501 AMP-binding enzyme EML485_17080 PF00668 Condensation domain EML485_17080 PF00501 AMP-binding enzyme EML485_17080 PF00550 Phosphopantetheine attachment site EML485_17080 PF13193 AMP-binding enzyme C-terminal domain EML485_17080 PF13193 AMP-binding enzyme C-terminal domain EML485_17080 PF00668 Condensation domain EML485_17080 PF07993 Male sterility protein EML485_17080 PF00550 Phosphopantetheine attachment site EML485_17080 PF07993 Male sterility protein EML485_17080 PF00501 AMP-binding enzyme EML485_17095 PF07715 TonB-dependent Receptor Plug Domain EML485_17100 PF01497 Periplasmic binding protein EML485_17105 PF01032 FecCD transport family EML485_17110 PF01032 FecCD transport family EML485_17115 PF00005 ABC transporter EML485_17130 PF00912 Transglycosylase EML485_17130 PF00905 Penicillin binding protein transpeptidase domain EML485_17130 PF06832 Penicillin-Binding Protein C-terminus Family EML485_17135 PF17962 Bacterial macroglobulin domain 6 EML485_17135 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain EML485_17135 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain EML485_17135 PF11974 Bacterial alpha-2-macroglobulin MG3 domain EML485_17135 PF01835 MG2 domain EML485_17135 PF00207 Alpha-2-macroglobulin family EML485_17135 PF07703 Alpha-2-macroglobulin bait region domain EML485_17135 PF07678 A-macroglobulin TED domain EML485_17135 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain EML485_17140 PF03966 Trm112p-like protein EML485_17150 PF00085 Thioredoxin EML485_17165 PF02798 Glutathione S-transferase, N-terminal domain EML485_17190 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_17190 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_17190 PF01842 ACT domain EML485_17200 PF13505 Outer membrane protein beta-barrel domain EML485_17205 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML485_17205 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML485_17205 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML485_17205 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML485_17210 PF17862 AAA+ lid domain EML485_17210 PF01434 Peptidase family M41 EML485_17210 PF06480 FtsH Extracellular EML485_17210 PF00004 ATPase family associated with various cellular activities (AAA) EML485_17215 PF01171 PP-loop family EML485_17225 PF00691 OmpA family EML485_17230 PF07676 WD40-like Beta Propeller Repeat EML485_17230 PF04052 TolB amino-terminal domain EML485_17240 PF02472 Biopolymer transport protein ExbD/TolR EML485_17245 PF01618 MotA/TolQ/ExbB proton channel family EML485_17250 PF03061 Thioesterase superfamily EML485_17260 PF00293 NUDIX domain EML485_17275 PF05496 Holliday junction DNA helicase RuvB P-loop domain EML485_17275 PF05491 RuvB C-terminal winged helix domain EML485_17275 PF17864 RuvB AAA lid domain EML485_17280 PF01330 RuvA N terminal domain EML485_17280 PF07499 RuvA, C-terminal domain EML485_17285 PF02075 Crossover junction endodeoxyribonuclease RuvC EML485_17290 PF00672 HAMP domain EML485_17290 PF02203 Tar ligand binding domain homologue EML485_17290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_17295 PF00296 Luciferase-like monooxygenase EML485_17300 PF01709 Transcriptional regulator EML485_17315 PF13277 YmdB-like protein EML485_17325 PF01595 Cyclin M transmembrane N-terminal domain EML485_17325 PF00571 CBS domain EML485_17325 PF03471 Transporter associated domain EML485_17345 PF02779 Transketolase, pyrimidine binding domain EML485_17345 PF02780 Transketolase, C-terminal domain EML485_17345 PF00456 Transketolase, thiamine diphosphate binding domain EML485_17350 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain EML485_17350 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain EML485_17355 PF02080 TrkA-C domain EML485_17355 PF03471 Transporter associated domain EML485_17355 PF00999 Sodium/hydrogen exchanger family EML485_17360 PF00162 Phosphoglycerate kinase EML485_17365 PF00274 Fructose-bisphosphate aldolase class-I EML485_17390 PF01197 Ribosomal protein L31 EML485_17395 PF00664 ABC transporter transmembrane region EML485_17395 PF00005 ABC transporter EML485_17400 PF00890 FAD binding domain EML485_17405 PF01389 OmpA-like transmembrane domain EML485_17405 PF00691 OmpA family EML485_17415 PF00459 Inositol monophosphatase family EML485_17445 PF00731 AIR carboxylase EML485_17450 PF02222 ATP-grasp domain EML485_17450 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain EML485_17455 PF00444 Ribosomal protein L36 EML485_17465 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) EML485_17485 PF00224 Pyruvate kinase, barrel domain EML485_17485 PF02887 Pyruvate kinase, alpha/beta domain EML485_17490 PF05951 Bacterial protein of unknown function (DUF882) EML485_17495 PF02954 Bacterial regulatory protein, Fis family EML485_17495 PF00158 Sigma-54 interaction domain EML485_17495 PF00072 Response regulator receiver domain EML485_17500 PF01432 Peptidase family M3 EML485_17500 PF08439 Oligopeptidase F EML485_17505 PF01063 Amino-transferase class IV EML485_17510 PF00990 Diguanylate cyclase, GGDEF domain EML485_17515 PF03435 Saccharopine dehydrogenase NADP binding domain EML485_17515 PF16653 Saccharopine dehydrogenase C-terminal domain EML485_17525 PF02872 5'-nucleotidase, C-terminal domain EML485_17525 PF00149 Calcineurin-like phosphoesterase EML485_17530 PF00762 Ferrochelatase EML485_17535 PF01145 SPFH domain / Band 7 family EML485_17535 PF16200 C-terminal region of band_7 EML485_17545 PF00571 CBS domain EML485_17545 PF01380 SIS domain EML485_17560 PF00483 Nucleotidyl transferase EML485_17565 PF13406 Transglycosylase SLT domain EML485_17575 PF00486 Transcriptional regulatory protein, C terminal EML485_17575 PF00072 Response regulator receiver domain EML485_17580 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_17580 PF00512 His Kinase A (phospho-acceptor) domain EML485_17580 PF00672 HAMP domain EML485_17585 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster EML485_17585 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_17595 PF01493 GXGXG motif EML485_17595 PF04898 Glutamate synthase central domain EML485_17595 PF01645 Conserved region in glutamate synthase EML485_17595 PF00310 Glutamine amidotransferases class-II EML485_17600 PF01212 Beta-eliminating lyase EML485_17605 PF00072 Response regulator receiver domain EML485_17605 PF00486 Transcriptional regulatory protein, C terminal EML485_17610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_17610 PF13492 GAF domain EML485_17610 PF02702 Osmosensitive K+ channel His kinase sensor domain EML485_17610 PF00512 His Kinase A (phospho-acceptor) domain EML485_17610 PF13493 Domain of unknown function (DUF4118) EML485_17615 PF02669 K+-transporting ATPase, c chain EML485_17630 PF03814 Potassium-transporting ATPase A subunit EML485_17640 PF00710 Asparaginase, N-terminal EML485_17640 PF17763 Glutaminase/Asparaginase C-terminal domain EML485_17645 PF00324 Amino acid permease EML485_17650 PF10415 Fumarase C C-terminus EML485_17650 PF00206 Lyase EML485_17655 PF07729 FCD domain EML485_17655 PF00392 Bacterial regulatory proteins, gntR family EML485_17660 PF00873 AcrB/AcrD/AcrF family EML485_17670 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_17670 PF00529 HlyD membrane-fusion protein of T1SS EML485_17680 PF07702 UTRA domain EML485_17680 PF00392 Bacterial regulatory proteins, gntR family EML485_17695 PF00528 Binding-protein-dependent transport system inner membrane component EML485_17700 PF00005 ABC transporter EML485_17700 PF00571 CBS domain EML485_17705 PF00221 Aromatic amino acid lyase EML485_17710 PF07690 Major Facilitator Superfamily EML485_17720 PF01053 Cys/Met metabolism PLP-dependent enzyme EML485_17725 PF01037 Lrp/AsnC ligand binding domain EML485_17730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_17730 PF03466 LysR substrate binding domain EML485_17735 PF00248 Aldo/keto reductase family EML485_17740 PF03466 LysR substrate binding domain EML485_17740 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_17745 PF00857 Isochorismatase family EML485_17760 PF05336 L-rhamnose mutarotase EML485_17765 PF00392 Bacterial regulatory proteins, gntR family EML485_17765 PF07729 FCD domain EML485_17770 PF00248 Aldo/keto reductase family EML485_17775 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus EML485_17775 PF08666 SAF domain EML485_17780 PF00005 ABC transporter EML485_17785 PF02653 Branched-chain amino acid transport system / permease component EML485_17790 PF02653 Branched-chain amino acid transport system / permease component EML485_17795 PF13407 Periplasmic binding protein domain EML485_17805 PF01717 Cobalamin-independent synthase, Catalytic domain EML485_17805 PF08267 Cobalamin-independent synthase, N-terminal domain EML485_17820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_17820 PF03466 LysR substrate binding domain EML485_17965 PF03061 Thioesterase superfamily EML485_17985 PF04168 A predicted alpha-helical domain with a conserved ER motif. EML485_17985 PF14403 Circularly permuted ATP-grasp type 2 EML485_17990 PF01841 Transglutaminase-like superfamily EML485_17990 PF08379 Bacterial transglutaminase-like N-terminal region EML485_18000 PF00005 ABC transporter EML485_18000 PF12848 ABC transporter EML485_18005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_18005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_18010 PF01070 FMN-dependent dehydrogenase EML485_18020 PF01047 MarR family EML485_18030 PF01791 DeoC/LacD family aldolase EML485_18035 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML485_18035 PF01266 FAD dependent oxidoreductase EML485_18040 PF00248 Aldo/keto reductase family EML485_18050 PF02653 Branched-chain amino acid transport system / permease component EML485_18055 PF00005 ABC transporter EML485_18060 PF13407 Periplasmic binding protein domain EML485_18070 PF00072 Response regulator receiver domain EML485_18080 PF00459 Inositol monophosphatase family EML485_18095 PF00011 Hsp20/alpha crystallin family EML485_18100 PF13593 SBF-like CPA transporter family (DUF4137) EML485_18105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18105 PF03466 LysR substrate binding domain EML485_18110 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML485_18110 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML485_18125 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18130 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18135 PF17912 MalK OB fold domain EML485_18135 PF00005 ABC transporter EML485_18140 PF00005 ABC transporter EML485_18140 PF03459 TOBE domain EML485_18140 PF17912 MalK OB fold domain EML485_18145 PF01266 FAD dependent oxidoreductase EML485_18145 PF16901 C-terminal domain of alpha-glycerophosphate oxidase EML485_18150 PF00455 DeoR C terminal sensor domain EML485_18150 PF08220 DeoR-like helix-turn-helix domain EML485_18155 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases EML485_18155 PF14824 Sirohaem biosynthesis protein central EML485_18155 PF10414 Sirohaem synthase dimerisation region EML485_18160 PF01568 Molydopterin dinucleotide binding domain EML485_18160 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML485_18160 PF04324 BFD-like [2Fe-2S] binding domain EML485_18160 PF00384 Molybdopterin oxidoreductase EML485_18170 PF04324 BFD-like [2Fe-2S] binding domain EML485_18170 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain EML485_18170 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_18170 PF18267 Rubredoxin NAD+ reductase C-terminal domain EML485_18170 PF01077 Nitrite and sulphite reductase 4Fe-4S domain EML485_18175 PF00005 ABC transporter EML485_18180 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18195 PF03861 ANTAR domain EML485_18195 PF08376 Nitrate and nitrite sensing EML485_18200 PF00392 Bacterial regulatory proteins, gntR family EML485_18200 PF07729 FCD domain EML485_18205 PF01566 Natural resistance-associated macrophage protein EML485_18210 PF03746 LamB/YcsF family EML485_18215 PF07286 Protein of unknown function (DUF1445) EML485_18220 PF02626 Carboxyltransferase domain, subdomain A and B EML485_18225 PF00289 Biotin carboxylase, N-terminal domain EML485_18225 PF02785 Biotin carboxylase C-terminal domain EML485_18225 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_18225 PF00364 Biotin-requiring enzyme EML485_18230 PF00128 Alpha amylase, catalytic domain EML485_18230 PF02806 Alpha amylase, C-terminal all-beta domain EML485_18235 PF09278 MerR, DNA binding EML485_18235 PF00376 MerR family regulatory protein EML485_18240 PF00593 TonB dependent receptor EML485_18240 PF07715 TonB-dependent Receptor Plug Domain EML485_18245 PF03466 LysR substrate binding domain EML485_18245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18250 PF06772 Bacterial low temperature requirement A protein (LtrA) EML485_18265 PF03428 Replication protein C N-terminal domain EML485_18265 PF11800 Replication protein C C-terminal region EML485_18270 PF07506 RepB plasmid partitioning protein EML485_18270 PF02195 ParB-like nuclease domain EML485_18275 PF13614 AAA domain EML485_18285 PF01042 Endoribonuclease L-PSP EML485_18290 PF01168 Alanine racemase, N-terminal domain EML485_18290 PF14031 Putative serine dehydratase domain EML485_18295 PF07364 Metallopeptidase family M81 EML485_18295 PF07171 MlrC C-terminus EML485_18300 PF05962 HutD EML485_18310 PF01175 Urocanase Rossmann-like domain EML485_18310 PF17392 Urocanase C-terminal domain EML485_18310 PF17391 Urocanase N-terminal domain EML485_18320 PF00221 Aromatic amino acid lyase EML485_18325 PF01979 Amidohydrolase family EML485_18330 PF01979 Amidohydrolase family EML485_18380 PF01266 FAD dependent oxidoreductase EML485_18385 PF01168 Alanine racemase, N-terminal domain EML485_18385 PF14031 Putative serine dehydratase domain EML485_18390 PF02423 Ornithine cyclodeaminase/mu-crystallin family EML485_18395 PF00171 Aldehyde dehydrogenase family EML485_18400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18400 PF03466 LysR substrate binding domain EML485_18405 PF01266 FAD dependent oxidoreductase EML485_18410 PF05544 Proline racemase EML485_18415 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18420 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18425 PF00005 ABC transporter EML485_18425 PF00571 CBS domain EML485_18435 PF01266 FAD dependent oxidoreductase EML485_18440 PF00171 Aldehyde dehydrogenase family EML485_18445 PF00701 Dihydrodipicolinate synthetase family EML485_18460 PF07729 FCD domain EML485_18460 PF00392 Bacterial regulatory proteins, gntR family EML485_18465 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_18465 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_18470 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_18470 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_18475 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_18475 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_18485 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18490 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18495 PF03459 TOBE domain EML485_18495 PF00005 ABC transporter EML485_18495 PF17912 MalK OB fold domain EML485_18500 PF00920 Dehydratase family EML485_18505 PF01370 NAD dependent epimerase/dehydratase family EML485_18510 PF03737 Aldolase/RraA EML485_18520 PF03275 UDP-galactopyranose mutase EML485_18535 PF03466 LysR substrate binding domain EML485_18535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18540 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_18555 PF07969 Amidohydrolase family EML485_18565 PF05977 Transmembrane secretion effector EML485_18580 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18580 PF03466 LysR substrate binding domain EML485_18585 PF07690 Major Facilitator Superfamily EML485_18630 PF13673 Acetyltransferase (GNAT) domain EML485_18635 PF04055 Radical SAM superfamily EML485_18635 PF06968 Biotin and Thiamin Synthesis associated domain EML485_18640 PF00155 Aminotransferase class I and II EML485_18650 PF00202 Aminotransferase class-III EML485_18655 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal EML485_18655 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III EML485_18685 PF00491 Arginase family EML485_18695 PF13276 HTH-like domain EML485_18695 PF13333 Integrase core domain EML485_18695 PF01527 Transposase EML485_18695 PF00665 Integrase core domain EML485_18705 PF00892 EamA-like transporter family EML485_18710 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_18710 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_18715 PF00211 Adenylate and Guanylate cyclase catalytic domain EML485_18725 PF11972 HTH DNA binding domain EML485_18725 PF07756 Protein of unknown function (DUF1612) EML485_18730 PF00083 Sugar (and other) transporter EML485_18735 PF00512 His Kinase A (phospho-acceptor) domain EML485_18735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_18740 PF00486 Transcriptional regulatory protein, C terminal EML485_18740 PF00072 Response regulator receiver domain EML485_18745 PF08019 Phosphoethanolamine transferase EptA/EptB EML485_18745 PF00884 Sulfatase EML485_18750 PF03466 LysR substrate binding domain EML485_18750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_18755 PF00593 TonB dependent receptor EML485_18755 PF07715 TonB-dependent Receptor Plug Domain EML485_18765 PF01032 FecCD transport family EML485_18770 PF00005 ABC transporter EML485_18780 PF00034 Cytochrome c EML485_18785 PF02631 RecX family EML485_18790 PF08450 SMP-30/Gluconolactonase/LRE-like region EML485_18800 PF02653 Branched-chain amino acid transport system / permease component EML485_18805 PF00005 ABC transporter EML485_18810 PF13407 Periplasmic binding protein domain EML485_18815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_18815 PF07730 Histidine kinase EML485_18820 PF00196 Bacterial regulatory proteins, luxR family EML485_18820 PF00072 Response regulator receiver domain EML485_18830 PF07995 Glucose / Sorbosone dehydrogenase EML485_18840 PF04445 Putative SAM-dependent methyltransferase EML485_18845 PF00849 RNA pseudouridylate synthase EML485_18850 PF01205 Uncharacterized protein family UPF0029 EML485_18855 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML485_18855 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_18860 PF00005 ABC transporter EML485_18860 PF00571 CBS domain EML485_18865 PF00528 Binding-protein-dependent transport system inner membrane component EML485_18875 PF13426 PAS domain EML485_18875 PF00072 Response regulator receiver domain EML485_18875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_18880 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_18885 PF13807 G-rich domain on putative tyrosine kinase EML485_18885 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain EML485_18885 PF02706 Chain length determinant protein EML485_18890 PF00483 Nucleotidyl transferase EML485_18895 PF00535 Glycosyl transferase family 2 EML485_18900 PF00535 Glycosyl transferase family 2 EML485_18905 PF00535 Glycosyl transferase family 2 EML485_18915 PF00722 Glycosyl hydrolases family 16 EML485_18920 PF01757 Acyltransferase family EML485_18925 PF01943 Polysaccharide biosynthesis protein EML485_18930 PF00535 Glycosyl transferase family 2 EML485_18935 PF04230 Polysaccharide pyruvyl transferase EML485_18940 PF00535 Glycosyl transferase family 2 EML485_18945 PF11089 Exopolysaccharide production repressor EML485_18960 PF01165 Ribosomal protein S21 EML485_18965 PF01266 FAD dependent oxidoreductase EML485_18980 PF01571 Aminomethyltransferase folate-binding domain EML485_18980 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML485_18980 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_18980 PF17806 Sarcosine oxidase A3 domain EML485_18995 PF01575 MaoC like domain EML485_19000 PF00128 Alpha amylase, catalytic domain EML485_19000 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML485_19000 PF18390 Glycogen debranching enzyme C-terminal domain EML485_19005 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I EML485_19005 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II EML485_19005 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain EML485_19005 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III EML485_19010 PF08323 Starch synthase catalytic domain EML485_19010 PF00534 Glycosyl transferases group 1 EML485_19015 PF00483 Nucleotidyl transferase EML485_19020 PF02806 Alpha amylase, C-terminal all-beta domain EML485_19020 PF00128 Alpha amylase, catalytic domain EML485_19020 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) EML485_19025 PF00343 Carbohydrate phosphorylase EML485_19035 PF01177 Asp/Glu/Hydantoin racemase EML485_19040 PF01037 Lrp/AsnC ligand binding domain EML485_19050 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML485_19050 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_19060 PF00107 Zinc-binding dehydrogenase EML485_19060 PF08240 Alcohol dehydrogenase GroES-like domain EML485_19070 PF00005 ABC transporter EML485_19070 PF00664 ABC transporter transmembrane region EML485_19075 PF00005 ABC transporter EML485_19075 PF00664 ABC transporter transmembrane region EML485_19080 PF01654 Cytochrome bd terminal oxidase subunit I EML485_19085 PF02322 Cytochrome bd terminal oxidase subunit II EML485_19090 PF08173 Membrane bound YbgT-like protein EML485_19110 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain EML485_19110 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain EML485_19115 PF02910 Fumarate reductase flavoprotein C-term EML485_19115 PF00890 FAD binding domain EML485_19120 PF02445 Quinolinate synthetase A protein EML485_19150 PF02224 Cytidylate kinase EML485_19155 PF00575 S1 RNA binding domain EML485_19185 PF00106 short chain dehydrogenase EML485_19190 PF01321 Creatinase/Prolidase N-terminal domain EML485_19190 PF00557 Metallopeptidase family M24 EML485_19195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_19200 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19205 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_19205 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_19210 PF00005 ABC transporter EML485_19215 PF00005 ABC transporter EML485_19215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_19220 PF00392 Bacterial regulatory proteins, gntR family EML485_19220 PF07729 FCD domain EML485_19225 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_19225 PF13378 Enolase C-terminal domain-like EML485_19230 PF00296 Luciferase-like monooxygenase EML485_19245 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_19245 PF00005 ABC transporter EML485_19250 PF00005 ABC transporter EML485_19255 PF02653 Branched-chain amino acid transport system / permease component EML485_19260 PF11862 Domain of unknown function (DUF3382) EML485_19260 PF02653 Branched-chain amino acid transport system / permease component EML485_19265 PF05199 GMC oxidoreductase EML485_19265 PF00732 GMC oxidoreductase EML485_19270 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase EML485_19270 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_19275 PF00501 AMP-binding enzyme EML485_19275 PF13193 AMP-binding enzyme C-terminal domain EML485_19300 PF01011 PQQ enzyme repeat EML485_19305 PF05974 Domain of unknown function (DUF892) EML485_19315 PF03275 UDP-galactopyranose mutase EML485_19335 PF01965 DJ-1/PfpI family EML485_19355 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain EML485_19355 PF02951 Prokaryotic glutathione synthetase, N-terminal domain EML485_19360 PF16363 GDP-mannose 4,6 dehydratase EML485_19365 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain EML485_19365 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain EML485_19365 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain EML485_19375 PF03466 LysR substrate binding domain EML485_19375 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_19380 PF00171 Aldehyde dehydrogenase family EML485_19385 PF09084 NMT1/THI5 like EML485_19390 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19395 PF00005 ABC transporter EML485_19400 PF00171 Aldehyde dehydrogenase family EML485_19400 PF18327 Proline utilization A proline dehydrogenase N-terminal domain EML485_19400 PF01619 Proline dehydrogenase EML485_19400 PF14850 DNA-binding domain of Proline dehydrogenase EML485_19405 PF01037 Lrp/AsnC ligand binding domain EML485_19410 PF08281 Sigma-70, region 4 EML485_19410 PF04542 Sigma-70 region 2 EML485_19420 PF00072 Response regulator receiver domain EML485_19425 PF07536 HWE histidine kinase EML485_19425 PF08447 PAS fold EML485_19425 PF13426 PAS domain EML485_19430 PF07536 HWE histidine kinase EML485_19430 PF13426 PAS domain EML485_19430 PF13581 Histidine kinase-like ATPase domain EML485_19440 PF16363 GDP-mannose 4,6 dehydratase EML485_19455 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain EML485_19460 PF03435 Saccharopine dehydrogenase NADP binding domain EML485_19460 PF16653 Saccharopine dehydrogenase C-terminal domain EML485_19465 PF00271 Helicase conserved C-terminal domain EML485_19465 PF00270 DEAD/DEAH box helicase EML485_19470 PF13840 ACT domain EML485_19470 PF00696 Amino acid kinase family EML485_19470 PF01842 ACT domain EML485_19475 PF00391 PEP-utilising enzyme, mobile domain EML485_19475 PF05524 PEP-utilising enzyme, N-terminal EML485_19475 PF02896 PEP-utilising enzyme, TIM barrel domain EML485_19475 PF01590 GAF domain EML485_19480 PF00472 RF-1 domain EML485_19480 PF03462 PCRF domain EML485_19485 PF17827 PrmC N-terminal domain EML485_19485 PF05175 Methyltransferase small domain EML485_19495 PF00004 ATPase family associated with various cellular activities (AAA) EML485_19495 PF02861 Clp amino terminal domain, pathogenicity island component EML485_19495 PF17871 AAA lid domain EML485_19495 PF10431 C-terminal, D2-small domain, of ClpB protein EML485_19495 PF07724 AAA domain (Cdc48 subfamily) EML485_19500 PF01551 Peptidase family M23 EML485_19500 PF10145 Phage-related minor tail protein EML485_19500 PF01464 Transglycosylase SLT domain EML485_19540 PF00701 Dihydrodipicolinate synthetase family EML485_19545 PF08450 SMP-30/Gluconolactonase/LRE-like region EML485_19550 PF00392 Bacterial regulatory proteins, gntR family EML485_19550 PF07729 FCD domain EML485_19555 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_19560 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19565 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_19565 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19570 PF00005 ABC transporter EML485_19570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_19575 PF13378 Enolase C-terminal domain-like EML485_19575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_19600 PF03358 NADPH-dependent FMN reductase EML485_19605 PF13649 Methyltransferase domain EML485_19610 PF01161 Phosphatidylethanolamine-binding protein EML485_19620 PF02909 Tetracyclin repressor-like, C-terminal domain EML485_19620 PF00440 Bacterial regulatory proteins, tetR family EML485_19625 PF07690 Major Facilitator Superfamily EML485_19630 PF01047 MarR family EML485_19630 PF00480 ROK family EML485_19645 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19650 PF08402 TOBE domain EML485_19650 PF00005 ABC transporter EML485_19655 PF03009 Glycerophosphoryl diester phosphodiesterase family EML485_19660 PF00313 'Cold-shock' DNA-binding domain EML485_19670 PF00109 Beta-ketoacyl synthase, N-terminal domain EML485_19670 PF02801 Beta-ketoacyl synthase, C-terminal domain EML485_19685 PF00873 AcrB/AcrD/AcrF family EML485_19690 PF00106 short chain dehydrogenase EML485_19700 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_19700 PF17806 Sarcosine oxidase A3 domain EML485_19700 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML485_19700 PF01571 Aminomethyltransferase folate-binding domain EML485_19705 PF04267 Sarcosine oxidase, delta subunit family EML485_19710 PF01266 FAD dependent oxidoreductase EML485_19715 PF12833 Helix-turn-helix domain EML485_19715 PF01965 DJ-1/PfpI family EML485_19730 PF01493 GXGXG motif EML485_19735 PF01645 Conserved region in glutamate synthase EML485_19740 PF00120 Glutamine synthetase, catalytic domain EML485_19745 PF00551 Formyl transferase EML485_19750 PF00392 Bacterial regulatory proteins, gntR family EML485_19750 PF07729 FCD domain EML485_19760 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19765 PF00005 ABC transporter EML485_19770 PF00465 Iron-containing alcohol dehydrogenase EML485_19780 PF12697 Alpha/beta hydrolase family EML485_19785 PF01613 Flavin reductase like domain EML485_19790 PF00296 Luciferase-like monooxygenase EML485_19795 PF00171 Aldehyde dehydrogenase family EML485_19810 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19815 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19820 PF00005 ABC transporter EML485_19820 PF08402 TOBE domain EML485_19825 PF00171 Aldehyde dehydrogenase family EML485_19835 PF00005 ABC transporter EML485_19835 PF17912 MalK OB fold domain EML485_19835 PF03459 TOBE domain EML485_19840 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19845 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19855 PF04205 FMN-binding domain EML485_19855 PF00890 FAD binding domain EML485_19860 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML485_19860 PF00356 Bacterial regulatory proteins, lacI family EML485_19870 PF00005 ABC transporter EML485_19870 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_19875 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_19875 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19880 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19885 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_19890 PF00528 Binding-protein-dependent transport system inner membrane component EML485_19895 PF00005 ABC transporter EML485_19905 PF04303 PrpF protein EML485_19910 PF03466 LysR substrate binding domain EML485_19910 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_19920 PF00155 Aminotransferase class I and II EML485_19920 PF00392 Bacterial regulatory proteins, gntR family EML485_19935 PF02567 Phenazine biosynthesis-like protein EML485_19940 PF00293 NUDIX domain EML485_19945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_19945 PF03466 LysR substrate binding domain EML485_19955 PF00364 Biotin-requiring enzyme EML485_19960 PF00289 Biotin carboxylase, N-terminal domain EML485_19960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain EML485_19960 PF02785 Biotin carboxylase C-terminal domain EML485_19975 PF02626 Carboxyltransferase domain, subdomain A and B EML485_19980 PF03746 LamB/YcsF family EML485_19985 PF00155 Aminotransferase class I and II EML485_19990 PF03466 LysR substrate binding domain EML485_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_19995 PF00106 short chain dehydrogenase EML485_20000 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20005 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20010 PF00005 ABC transporter EML485_20015 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_20020 PF03737 Aldolase/RraA EML485_20035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20035 PF03466 LysR substrate binding domain EML485_20045 PF03466 LysR substrate binding domain EML485_20045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20050 PF07690 Major Facilitator Superfamily EML485_20055 PF00296 Luciferase-like monooxygenase EML485_20060 PF00248 Aldo/keto reductase family EML485_20065 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML485_20065 PF01488 Shikimate / quinate 5-dehydrogenase EML485_20065 PF08501 Shikimate dehydrogenase substrate binding domain EML485_20070 PF00732 GMC oxidoreductase EML485_20070 PF05199 GMC oxidoreductase EML485_20075 PF12833 Helix-turn-helix domain EML485_20075 PF02311 AraC-like ligand binding domain EML485_20080 PF00924 Mechanosensitive ion channel EML485_20090 PF00196 Bacterial regulatory proteins, luxR family EML485_20090 PF00072 Response regulator receiver domain EML485_20110 PF00924 Mechanosensitive ion channel EML485_20115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_20115 PF08447 PAS fold EML485_20115 PF13426 PAS domain EML485_20115 PF00512 His Kinase A (phospho-acceptor) domain EML485_20115 PF00989 PAS fold EML485_20115 PF13493 Domain of unknown function (DUF4118) EML485_20120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_20120 PF01627 Hpt domain EML485_20120 PF00072 Response regulator receiver domain EML485_20120 PF00672 HAMP domain EML485_20120 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) EML485_20120 PF00512 His Kinase A (phospho-acceptor) domain EML485_20125 PF00753 Metallo-beta-lactamase superfamily EML485_20125 PF16123 Hydroxyacylglutathione hydrolase C-terminus EML485_20140 PF01266 FAD dependent oxidoreductase EML485_20150 PF01571 Aminomethyltransferase folate-binding domain EML485_20150 PF17806 Sarcosine oxidase A3 domain EML485_20150 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_20150 PF08669 Glycine cleavage T-protein C-terminal barrel domain EML485_20160 PF00464 Serine hydroxymethyltransferase EML485_20165 PF00551 Formyl transferase EML485_20175 PF00440 Bacterial regulatory proteins, tetR family EML485_20180 PF08240 Alcohol dehydrogenase GroES-like domain EML485_20180 PF00107 Zinc-binding dehydrogenase EML485_20185 PF12833 Helix-turn-helix domain EML485_20190 PF13407 Periplasmic binding protein domain EML485_20195 PF00005 ABC transporter EML485_20200 PF02653 Branched-chain amino acid transport system / permease component EML485_20205 PF00106 short chain dehydrogenase EML485_20210 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML485_20210 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML485_20220 PF08946 Osmosensory transporter coiled coil EML485_20220 PF00083 Sugar (and other) transporter EML485_20230 PF02563 Polysaccharide biosynthesis/export protein EML485_20245 PF06744 Type VI secretion protein IcmF C-terminal EML485_20245 PF14331 ImcF-related N-terminal domain EML485_20245 PF06761 Intracellular multiplication and human macrophage-killing EML485_20250 PF00691 OmpA family EML485_20255 PF05936 Bacterial Type VI secretion, VC_A0110, EvfL, ImpJ, VasE EML485_20270 PF05947 Type VI secretion system, TssF EML485_20290 PF05943 Type VI secretion protein, EvpB/VC_A0108, tail sheath EML485_20295 PF05591 Type VI secretion system, VipA, VC_A0107 or Hcp2 EML485_20305 PF07724 AAA domain (Cdc48 subfamily) EML485_20305 PF10431 C-terminal, D2-small domain, of ClpB protein EML485_20305 PF17871 AAA lid domain EML485_20305 PF00004 ATPase family associated with various cellular activities (AAA) EML485_20325 PF04717 Type VI secretion system, phage-baseplate injector EML485_20350 PF08448 PAS fold EML485_20350 PF08447 PAS fold EML485_20350 PF00990 Diguanylate cyclase, GGDEF domain EML485_20350 PF00563 EAL domain EML485_20360 PF03471 Transporter associated domain EML485_20360 PF03741 Integral membrane protein TerC family EML485_20375 PF00005 ABC transporter EML485_20375 PF17912 MalK OB fold domain EML485_20375 PF03459 TOBE domain EML485_20380 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20385 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20390 PF13416 Bacterial extracellular solute-binding protein EML485_20395 PF01261 Xylose isomerase-like TIM barrel EML485_20400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_20400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_20405 PF00356 Bacterial regulatory proteins, lacI family EML485_20420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20420 PF03466 LysR substrate binding domain EML485_20430 PF13407 Periplasmic binding protein domain EML485_20435 PF00005 ABC transporter EML485_20440 PF02653 Branched-chain amino acid transport system / permease component EML485_20445 PF02653 Branched-chain amino acid transport system / permease component EML485_20450 PF00356 Bacterial regulatory proteins, lacI family EML485_20460 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_20460 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_20480 PF00034 Cytochrome c EML485_20495 PF00394 Multicopper oxidase EML485_20495 PF07732 Multicopper oxidase EML485_20515 PF00092 von Willebrand factor type A domain EML485_20520 PF07728 AAA domain (dynein-related subfamily) EML485_20520 PF08406 CbbQ/NirQ/NorQ C-terminal EML485_20525 PF00115 Cytochrome C and Quinol oxidase polypeptide I EML485_20530 PF00034 Cytochrome c EML485_20540 PF00510 Cytochrome c oxidase subunit III EML485_20555 PF02441 Flavoprotein EML485_20560 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase EML485_20565 PF04343 Protein of unknown function, DUF488 EML485_20575 PF01136 Peptidase family U32 EML485_20605 PF00005 ABC transporter EML485_20615 PF06796 Periplasmic nitrate reductase protein NapE EML485_20630 PF00384 Molybdopterin oxidoreductase EML485_20630 PF01568 Molydopterin dinucleotide binding domain EML485_20630 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML485_20635 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) EML485_20640 PF03264 NapC/NirT cytochrome c family, N-terminal region EML485_20645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20645 PF03466 LysR substrate binding domain EML485_20655 PF00005 ABC transporter EML485_20655 PF00664 ABC transporter transmembrane region EML485_20660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_20660 PF00529 HlyD membrane-fusion protein of T1SS EML485_20670 PF17837 4'-phosphopantetheinyl transferase N-terminal domain EML485_20670 PF01648 4'-phosphopantetheinyl transferase superfamily EML485_20675 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_20675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain EML485_20675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_20680 PF03466 LysR substrate binding domain EML485_20680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20685 PF00356 Bacterial regulatory proteins, lacI family EML485_20695 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20705 PF00005 ABC transporter EML485_20705 PF08402 TOBE domain EML485_20715 PF01979 Amidohydrolase family EML485_20715 PF13382 Adenine deaminase C-terminal domain EML485_20720 PF03796 DnaB-like helicase C terminal domain EML485_20725 PF07687 Peptidase dimerisation domain EML485_20725 PF01546 Peptidase family M20/M25/M40 EML485_20735 PF01244 Membrane dipeptidase (Peptidase family M19) EML485_20740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_20745 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20750 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_20750 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20755 PF00005 ABC transporter EML485_20755 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_20760 PF00005 ABC transporter EML485_20760 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_20770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_20770 PF03466 LysR substrate binding domain EML485_20775 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_20780 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20785 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_20785 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20790 PF01425 Amidase EML485_20795 PF01965 DJ-1/PfpI family EML485_20805 PF01546 Peptidase family M20/M25/M40 EML485_20805 PF07687 Peptidase dimerisation domain EML485_20810 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_20810 PF00005 ABC transporter EML485_20815 PF04198 Putative sugar-binding domain EML485_20825 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20830 PF00528 Binding-protein-dependent transport system inner membrane component EML485_20835 PF08402 TOBE domain EML485_20835 PF00005 ABC transporter EML485_20840 PF01232 Mannitol dehydrogenase Rossmann domain EML485_20840 PF08125 Mannitol dehydrogenase C-terminal domain EML485_20845 PF13419 Haloacid dehalogenase-like hydrolase EML485_20850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML485_20850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML485_20855 PF01380 SIS domain EML485_20855 PF01418 Helix-turn-helix domain, rpiR family EML485_20865 PF00730 HhH-GPD superfamily base excision DNA repair protein EML485_20865 PF00633 Helix-hairpin-helix motif EML485_20865 PF10576 Iron-sulfur binding domain of endonuclease III EML485_20875 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain EML485_20875 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain EML485_20890 PF13936 Helix-turn-helix domain EML485_20890 PF04198 Putative sugar-binding domain EML485_20895 PF00923 Transaldolase/Fructose-6-phosphate aldolase EML485_20900 PF01614 Bacterial transcriptional regulator EML485_20900 PF09339 IclR helix-turn-helix domain EML485_20915 PF00950 ABC 3 transport family EML485_20920 PF00950 ABC 3 transport family EML485_20925 PF00005 ABC transporter EML485_20930 PF01297 Zinc-uptake complex component A periplasmic EML485_20940 PF01336 OB-fold nucleic acid binding domain EML485_20940 PF00152 tRNA synthetases class II (D, K and N) EML485_20945 PF00749 tRNA synthetases class I (E and Q), catalytic domain EML485_20950 PF03600 Citrate transporter EML485_20950 PF02080 TrkA-C domain EML485_20955 PF03471 Transporter associated domain EML485_20955 PF03741 Integral membrane protein TerC family EML485_20960 PF00440 Bacterial regulatory proteins, tetR family EML485_20965 PF13533 Biotin-lipoyl like EML485_20970 PF07690 Major Facilitator Superfamily EML485_20980 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML485_20980 PF00356 Bacterial regulatory proteins, lacI family EML485_20985 PF02782 FGGY family of carbohydrate kinases, C-terminal domain EML485_20985 PF00370 FGGY family of carbohydrate kinases, N-terminal domain EML485_20990 PF01261 Xylose isomerase-like TIM barrel EML485_20995 PF00232 Glycosyl hydrolase family 1 EML485_21000 PF00881 Nitroreductase family EML485_21005 PF00005 ABC transporter EML485_21005 PF09383 NIL domain EML485_21010 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21015 PF03180 NLPA lipoprotein EML485_21020 PF13188 PAS domain EML485_21020 PF03707 Bacterial signalling protein N terminal repeat EML485_21020 PF00990 Diguanylate cyclase, GGDEF domain EML485_21020 PF00563 EAL domain EML485_21025 PF00581 Rhodanese-like domain EML485_21025 PF17773 UPF0176 acylphosphatase like domain EML485_21035 PF01928 CYTH domain EML485_21040 PF01081 KDPG and KHG aldolase EML485_21060 PF03824 High-affinity nickel-transport protein EML485_21080 PF07683 Cobalamin synthesis protein cobW C-terminal domain EML485_21080 PF02492 CobW/HypB/UreG, nucleotide-binding domain EML485_21085 PF02633 Creatinine amidohydrolase EML485_21090 PF01047 MarR family EML485_21095 PF00356 Bacterial regulatory proteins, lacI family EML485_21100 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_21100 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_21105 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_21105 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_21110 PF04962 KduI/IolB family EML485_21115 PF01261 Xylose isomerase-like TIM barrel EML485_21120 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML485_21120 PF00205 Thiamine pyrophosphate enzyme, central domain EML485_21120 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML485_21125 PF00294 pfkB family carbohydrate kinase EML485_21135 PF00005 ABC transporter EML485_21140 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_21140 PF00005 ABC transporter EML485_21155 PF13458 Periplasmic binding protein EML485_21165 PF12833 Helix-turn-helix domain EML485_21175 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_21175 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21180 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21185 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_21190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_21190 PF00005 ABC transporter EML485_21200 PF01261 Xylose isomerase-like TIM barrel EML485_21200 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily EML485_21210 PF01220 Dehydroquinase class II EML485_21215 PF08501 Shikimate dehydrogenase substrate binding domain EML485_21215 PF18317 Shikimate 5'-dehydrogenase C-terminal domain EML485_21220 PF00005 ABC transporter EML485_21225 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_21230 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_21235 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21240 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21245 PF10397 Adenylosuccinate lyase C-terminus EML485_21245 PF00206 Lyase EML485_21250 PF00775 Dioxygenase EML485_21255 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal EML485_21255 PF00775 Dioxygenase EML485_21260 PF02627 Carboxymuconolactone decarboxylase family EML485_21265 PF00561 alpha/beta hydrolase fold EML485_21270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_21270 PF03466 LysR substrate binding domain EML485_21275 PF01494 FAD binding domain EML485_21285 PF01614 Bacterial transcriptional regulator EML485_21285 PF09339 IclR helix-turn-helix domain EML485_21290 PF01144 Coenzyme A transferase EML485_21295 PF01144 Coenzyme A transferase EML485_21300 PF00108 Thiolase, N-terminal domain EML485_21300 PF02803 Thiolase, C-terminal domain EML485_21305 PF00356 Bacterial regulatory proteins, lacI family EML485_21310 PF13407 Periplasmic binding protein domain EML485_21315 PF13407 Periplasmic binding protein domain EML485_21320 PF01261 Xylose isomerase-like TIM barrel EML485_21325 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_21325 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_21335 PF00356 Bacterial regulatory proteins, lacI family EML485_21340 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21345 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21350 PF00005 ABC transporter EML485_21350 PF17912 MalK OB fold domain EML485_21360 PF07470 Glycosyl Hydrolase Family 88 EML485_21380 PF00480 ROK family EML485_21380 PF01325 Iron dependent repressor, N-terminal DNA binding domain EML485_21390 PF00005 ABC transporter EML485_21390 PF17912 MalK OB fold domain EML485_21395 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21400 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21405 PF03009 Glycerophosphoryl diester phosphodiesterase family EML485_21410 PF00459 Inositol monophosphatase family EML485_21415 PF00106 short chain dehydrogenase EML485_21420 PF12852 Cupin EML485_21420 PF12833 Helix-turn-helix domain EML485_21425 PF00480 ROK family EML485_21435 PF00005 ABC transporter EML485_21435 PF08402 TOBE domain EML485_21440 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21455 PF11953 Domain of unknown function (DUF3470) EML485_21455 PF00037 4Fe-4S binding domain EML485_21460 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML485_21460 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML485_21490 PF00248 Aldo/keto reductase family EML485_21495 PF03466 LysR substrate binding domain EML485_21495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_21505 PF01557 Fumarylacetoacetate (FAA) hydrolase family EML485_21525 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21530 PF00005 ABC transporter EML485_21540 PF00664 ABC transporter transmembrane region EML485_21540 PF00005 ABC transporter EML485_21570 PF01757 Acyltransferase family EML485_21575 PF00535 Glycosyl transferase family 2 EML485_21585 PF01370 NAD dependent epimerase/dehydratase family EML485_21590 PF00535 Glycosyl transferase family 2 EML485_21600 PF00483 Nucleotidyl transferase EML485_21605 PF04321 RmlD substrate binding domain EML485_21610 PF16363 GDP-mannose 4,6 dehydratase EML485_21615 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EML485_21620 PF13361 UvrD-like helicase C-terminal domain EML485_21620 PF00580 UvrD/REP helicase N-terminal domain EML485_21625 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_21625 PF00005 ABC transporter EML485_21630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_21630 PF00005 ABC transporter EML485_21635 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21635 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_21640 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21645 PF00392 Bacterial regulatory proteins, gntR family EML485_21645 PF07729 FCD domain EML485_21650 PF03786 D-mannonate dehydratase (UxuA) EML485_21655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_21665 PF13188 PAS domain EML485_21665 PF00563 EAL domain EML485_21665 PF03707 Bacterial signalling protein N terminal repeat EML485_21665 PF00990 Diguanylate cyclase, GGDEF domain EML485_21680 PF02735 Ku70/Ku80 beta-barrel domain EML485_21695 PF01865 Protein of unknown function DUF47 EML485_21705 PF00873 AcrB/AcrD/AcrF family EML485_21710 PF13533 Biotin-lipoyl like EML485_21715 PF00072 Response regulator receiver domain EML485_21715 PF00486 Transcriptional regulatory protein, C terminal EML485_21720 PF00672 HAMP domain EML485_21720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_21720 PF00512 His Kinase A (phospho-acceptor) domain EML485_21730 PF03466 LysR substrate binding domain EML485_21730 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_21735 PF00141 Peroxidase EML485_21745 PF10114 Sensory domain found in PocR EML485_21745 PF12833 Helix-turn-helix domain EML485_21750 PF00171 Aldehyde dehydrogenase family EML485_21755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_21755 PF03466 LysR substrate binding domain EML485_21760 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML485_21765 PF00884 Sulfatase EML485_21765 PF12411 Choline sulfatase enzyme C terminal EML485_21770 PF00294 pfkB family carbohydrate kinase EML485_21775 PF08402 TOBE domain EML485_21775 PF00005 ABC transporter EML485_21780 PF00206 Lyase EML485_21780 PF14698 Argininosuccinate lyase C-terminal EML485_21785 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21790 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21795 PF13416 Bacterial extracellular solute-binding protein EML485_21800 PF00480 ROK family EML485_21825 PF02056 Family 4 glycosyl hydrolase EML485_21825 PF11975 Family 4 glycosyl hydrolase C-terminal domain EML485_21830 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_21835 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21840 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_21840 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21845 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_21845 PF00005 ABC transporter EML485_21850 PF02056 Family 4 glycosyl hydrolase EML485_21850 PF11975 Family 4 glycosyl hydrolase C-terminal domain EML485_21855 PF13533 Biotin-lipoyl like EML485_21860 PF00005 ABC transporter EML485_21880 PF00072 Response regulator receiver domain EML485_21885 PF12327 FtsZ family, C-terminal domain EML485_21885 PF00091 Tubulin/FtsZ family, GTPase domain EML485_21890 PF07729 FCD domain EML485_21890 PF00392 Bacterial regulatory proteins, gntR family EML485_21895 PF00701 Dihydrodipicolinate synthetase family EML485_21900 PF02615 Malate/L-lactate dehydrogenase EML485_21910 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21915 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21920 PF00005 ABC transporter EML485_21925 PF01266 FAD dependent oxidoreductase EML485_21935 PF05544 Proline racemase EML485_21940 PF00356 Bacterial regulatory proteins, lacI family EML485_21950 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_21955 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21960 PF00528 Binding-protein-dependent transport system inner membrane component EML485_21965 PF00005 ABC transporter EML485_21970 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_21970 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain EML485_21975 PF00563 EAL domain EML485_21975 PF00990 Diguanylate cyclase, GGDEF domain EML485_21975 PF03707 Bacterial signalling protein N terminal repeat EML485_21980 PF02530 Porin subfamily EML485_21985 PF01979 Amidohydrolase family EML485_21990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_21995 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22000 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22000 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_22005 PF01979 Amidohydrolase family EML485_22010 PF01979 Amidohydrolase family EML485_22015 PF00005 ABC transporter EML485_22015 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_22020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_22020 PF00005 ABC transporter EML485_22025 PF07729 FCD domain EML485_22025 PF00392 Bacterial regulatory proteins, gntR family EML485_22030 PF01613 Flavin reductase like domain EML485_22035 PF01177 Asp/Glu/Hydantoin racemase EML485_22040 PF03466 LysR substrate binding domain EML485_22040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_22050 PF00037 4Fe-4S binding domain EML485_22050 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region EML485_22050 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit EML485_22055 PF00037 4Fe-4S binding domain EML485_22055 PF04879 Molybdopterin oxidoreductase Fe4S4 domain EML485_22055 PF00384 Molybdopterin oxidoreductase EML485_22055 PF01568 Molydopterin dinucleotide binding domain EML485_22055 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region EML485_22065 PF07690 Major Facilitator Superfamily EML485_22070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_22075 PF00486 Transcriptional regulatory protein, C terminal EML485_22075 PF00072 Response regulator receiver domain EML485_22095 PF05532 CsbD-like EML485_22100 PF00196 Bacterial regulatory proteins, luxR family EML485_22100 PF00072 Response regulator receiver domain EML485_22105 PF07729 FCD domain EML485_22105 PF00392 Bacterial regulatory proteins, gntR family EML485_22110 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_22115 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22120 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_22120 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22130 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_22130 PF00005 ABC transporter EML485_22135 PF05532 CsbD-like EML485_22145 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain EML485_22145 PF02777 Iron/manganese superoxide dismutases, C-terminal domain EML485_22150 PF03401 Tripartite tricarboxylate transporter family receptor EML485_22155 PF00664 ABC transporter transmembrane region EML485_22155 PF00005 ABC transporter EML485_22160 PF00005 ABC transporter EML485_22170 PF00577 Outer membrane usher protein EML485_22170 PF13954 PapC N-terminal domain EML485_22170 PF13953 PapC C-terminal domain EML485_22185 PF00330 Aconitase family (aconitate hydratase) EML485_22185 PF06434 Aconitate hydratase 2 N-terminus EML485_22185 PF11791 Aconitate B N-terminal domain EML485_22190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_22190 PF00672 HAMP domain EML485_22200 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_22210 PF08240 Alcohol dehydrogenase GroES-like domain EML485_22210 PF00107 Zinc-binding dehydrogenase EML485_22215 PF00158 Sigma-54 interaction domain EML485_22215 PF02954 Bacterial regulatory protein, Fis family EML485_22215 PF01590 GAF domain EML485_22225 PF00356 Bacterial regulatory proteins, lacI family EML485_22235 PF00005 ABC transporter EML485_22240 PF02653 Branched-chain amino acid transport system / permease component EML485_22245 PF02653 Branched-chain amino acid transport system / permease component EML485_22250 PF01261 Xylose isomerase-like TIM barrel EML485_22255 PF00485 Phosphoribulokinase / Uridine kinase family EML485_22260 PF01261 Xylose isomerase-like TIM barrel EML485_22270 PF00005 ABC transporter EML485_22275 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22280 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22285 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_22290 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EML485_22295 PF01321 Creatinase/Prolidase N-terminal domain EML485_22295 PF00557 Metallopeptidase family M24 EML485_22300 PF02423 Ornithine cyclodeaminase/mu-crystallin family EML485_22305 PF00291 Pyridoxal-phosphate dependent enzyme EML485_22310 PF00392 Bacterial regulatory proteins, gntR family EML485_22310 PF00155 Aminotransferase class I and II EML485_22315 PF00202 Aminotransferase class-III EML485_22320 PF00171 Aldehyde dehydrogenase family EML485_22325 PF01037 Lrp/AsnC ligand binding domain EML485_22335 PF04244 Deoxyribodipyrimidine photo-lyase-related protein EML485_22355 PF04199 Putative cyclase EML485_22360 PF01494 FAD binding domain EML485_22365 PF00190 Cupin EML485_22375 PF00072 Response regulator receiver domain EML485_22375 PF00196 Bacterial regulatory proteins, luxR family EML485_22380 PF00196 Bacterial regulatory proteins, luxR family EML485_22380 PF00072 Response regulator receiver domain EML485_22385 PF00512 His Kinase A (phospho-acceptor) domain EML485_22385 PF00072 Response regulator receiver domain EML485_22385 PF13426 PAS domain EML485_22385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_22385 PF08448 PAS fold EML485_22390 PF00384 Molybdopterin oxidoreductase EML485_22395 PF00210 Ferritin-like domain EML485_22400 PF00561 alpha/beta hydrolase fold EML485_22415 PF00072 Response regulator receiver domain EML485_22415 PF13426 PAS domain EML485_22415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_22420 PF00072 Response regulator receiver domain EML485_22420 PF00486 Transcriptional regulatory protein, C terminal EML485_22435 PF00528 Binding-protein-dependent transport system inner membrane component EML485_22440 PF08402 TOBE domain EML485_22440 PF00005 ABC transporter EML485_22445 PF00459 Inositol monophosphatase family EML485_22455 PF16363 GDP-mannose 4,6 dehydratase EML485_22460 PF01370 NAD dependent epimerase/dehydratase family EML485_22485 PF00072 Response regulator receiver domain EML485_22485 PF00196 Bacterial regulatory proteins, luxR family EML485_22490 PF02585 GlcNAc-PI de-N-acetylase EML485_22495 PF00483 Nucleotidyl transferase EML485_22500 PF08484 C-methyltransferase C-terminal domain EML485_22500 PF08421 Putative zinc binding domain EML485_22505 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase EML485_22510 PF09940 Domain of unknown function (DUF2172) EML485_22510 PF16254 Domain of unknown function (DUF4910) EML485_22510 PF16221 winged helix-turn-helix EML485_22515 PF16363 GDP-mannose 4,6 dehydratase EML485_22520 PF00202 Aminotransferase class-III EML485_22525 PF00072 Response regulator receiver domain EML485_22525 PF00196 Bacterial regulatory proteins, luxR family EML485_22530 PF00196 Bacterial regulatory proteins, luxR family EML485_22530 PF00072 Response regulator receiver domain EML485_22550 PF13439 Glycosyltransferase Family 4 EML485_22550 PF00534 Glycosyl transferases group 1 EML485_22560 PF00953 Glycosyl transferase family 4 EML485_22580 PF00534 Glycosyl transferases group 1 EML485_22580 PF13439 Glycosyltransferase Family 4 EML485_22585 PF00534 Glycosyl transferases group 1 EML485_22585 PF13439 Glycosyltransferase Family 4 EML485_22595 PF01037 Lrp/AsnC ligand binding domain EML485_22620 PF13193 AMP-binding enzyme C-terminal domain EML485_22620 PF00501 AMP-binding enzyme EML485_22630 PF09339 IclR helix-turn-helix domain EML485_22630 PF01614 Bacterial transcriptional regulator EML485_22640 PF03480 Bacterial extracellular solute-binding protein, family 7 EML485_22640 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component EML485_22645 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component EML485_22660 PF00589 Phage integrase family EML485_22660 PF13356 Arm DNA-binding domain EML485_22660 PF14659 Phage integrase, N-terminal SAM-like domain EML485_22675 PF09137 Glucodextranase, domain N EML485_22675 PF00723 Glycosyl hydrolases family 15 EML485_22680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase EML485_22680 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain EML485_22685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain EML485_22685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain EML485_22710 PF00455 DeoR C terminal sensor domain EML485_22710 PF08220 DeoR-like helix-turn-helix domain EML485_22715 PF13407 Periplasmic binding protein domain EML485_22720 PF00005 ABC transporter EML485_22725 PF02653 Branched-chain amino acid transport system / permease component EML485_22730 PF02653 Branched-chain amino acid transport system / permease component EML485_22740 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) EML485_22740 PF00294 pfkB family carbohydrate kinase EML485_22745 PF01791 DeoC/LacD family aldolase EML485_22750 PF00171 Aldehyde dehydrogenase family EML485_22775 PF01443 Viral (Superfamily 1) RNA helicase EML485_22775 PF03389 MobA/MobL family EML485_22775 PF17841 BID domain of Bartonella effector protein (Bep) EML485_22790 PF02534 Type IV secretory system Conjugative DNA transfer EML485_22810 PF01695 IstB-like ATP binding protein EML485_22825 PF01047 MarR family EML485_22845 PF00248 Aldo/keto reductase family EML485_22855 PF00107 Zinc-binding dehydrogenase EML485_22855 PF08240 Alcohol dehydrogenase GroES-like domain EML485_22860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_22860 PF03466 LysR substrate binding domain EML485_22865 PF00440 Bacterial regulatory proteins, tetR family EML485_22880 PF00248 Aldo/keto reductase family EML485_22900 PF07883 Cupin domain EML485_22900 PF12833 Helix-turn-helix domain EML485_22960 PF00665 Integrase core domain EML485_22965 PF13302 Acetyltransferase (GNAT) domain EML485_22980 PF00376 MerR family regulatory protein EML485_22980 PF13614 AAA domain EML485_22985 PF02195 ParB-like nuclease domain EML485_22985 PF07506 RepB plasmid partitioning protein EML485_22990 PF03428 Replication protein C N-terminal domain EML485_22990 PF11800 Replication protein C C-terminal region EML485_23000 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_23000 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_23005 PF00005 ABC transporter EML485_23010 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_23015 PF00356 Bacterial regulatory proteins, lacI family EML485_23060 PF11972 HTH DNA binding domain EML485_23060 PF07756 Protein of unknown function (DUF1612) EML485_23095 PF02463 RecF/RecN/SMC N terminal domain EML485_23100 PF00570 HRDC domain EML485_23100 PF13361 UvrD-like helicase C-terminal domain EML485_23160 PF02661 Fic/DOC family EML485_23160 PF13784 Fic/DOC family N-terminal EML485_23170 PF17762 HTH domain found in ParB protein EML485_23170 PF02195 ParB-like nuclease domain EML485_23220 PF02735 Ku70/Ku80 beta-barrel domain EML485_23225 PF02735 Ku70/Ku80 beta-barrel domain EML485_23230 PF04679 ATP dependent DNA ligase C terminal region EML485_23230 PF01068 ATP dependent DNA ligase domain EML485_23230 PF13298 DNA polymerase Ligase (LigD) EML485_23235 PF00011 Hsp20/alpha crystallin family EML485_23250 PF01068 ATP dependent DNA ligase domain EML485_23250 PF13298 DNA polymerase Ligase (LigD) EML485_23250 PF04679 ATP dependent DNA ligase C terminal region EML485_23265 PF13416 Bacterial extracellular solute-binding protein EML485_23270 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23275 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23285 PF08402 TOBE domain EML485_23285 PF00005 ABC transporter EML485_23290 PF01380 SIS domain EML485_23290 PF01418 Helix-turn-helix domain, rpiR family EML485_23295 PF01047 MarR family EML485_23300 PF00561 alpha/beta hydrolase fold EML485_23310 PF00701 Dihydrodipicolinate synthetase family EML485_23315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_23315 PF00005 ABC transporter EML485_23320 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23320 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_23325 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_23340 PF04166 Pyridoxal phosphate biosynthetic protein PdxA EML485_23345 PF00465 Iron-containing alcohol dehydrogenase EML485_23350 PF07729 FCD domain EML485_23350 PF00392 Bacterial regulatory proteins, gntR family EML485_23355 PF07005 Sugar-binding N-terminal domain EML485_23355 PF17042 Nucleotide-binding C-terminal domain EML485_23365 PF00356 Bacterial regulatory proteins, lacI family EML485_23375 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23380 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23390 PF17912 MalK OB fold domain EML485_23390 PF00005 ABC transporter EML485_23395 PF03466 LysR substrate binding domain EML485_23395 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23405 PF06745 KaiC EML485_23410 PF13581 Histidine kinase-like ATPase domain EML485_23410 PF07536 HWE histidine kinase EML485_23410 PF13426 PAS domain EML485_23420 PF07238 PilZ domain EML485_23420 PF00535 Glycosyl transferase family 2 EML485_23420 PF03552 Cellulose synthase EML485_23450 PF04679 ATP dependent DNA ligase C terminal region EML485_23450 PF01068 ATP dependent DNA ligase domain EML485_23450 PF13298 DNA polymerase Ligase (LigD) EML485_23465 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML485_23465 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML485_23465 PF14579 Helix-hairpin-helix motif EML485_23465 PF02811 PHP domain EML485_23485 PF05284 Protein of unknown function (DUF736) EML485_23500 PF05406 WGR domain EML485_23505 PF02534 Type IV secretory system Conjugative DNA transfer EML485_23520 PF01443 Viral (Superfamily 1) RNA helicase EML485_23520 PF03389 MobA/MobL family EML485_23520 PF17841 BID domain of Bartonella effector protein (Bep) EML485_23555 PF00155 Aminotransferase class I and II EML485_23560 PF00486 Transcriptional regulatory protein, C terminal EML485_23560 PF00072 Response regulator receiver domain EML485_23570 PF00486 Transcriptional regulatory protein, C terminal EML485_23570 PF00072 Response regulator receiver domain EML485_23580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain EML485_23580 PF00205 Thiamine pyrophosphate enzyme, central domain EML485_23580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain EML485_23585 PF00202 Aminotransferase class-III EML485_23595 PF08402 TOBE domain EML485_23595 PF00005 ABC transporter EML485_23600 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23605 PF00528 Binding-protein-dependent transport system inner membrane component EML485_23615 PF00005 ABC transporter EML485_23630 PF09339 IclR helix-turn-helix domain EML485_23630 PF01614 Bacterial transcriptional regulator EML485_23635 PF00171 Aldehyde dehydrogenase family EML485_23640 PF00465 Iron-containing alcohol dehydrogenase EML485_23645 PF00753 Metallo-beta-lactamase superfamily EML485_23675 PF02308 MgtC family EML485_23690 PF00043 Glutathione S-transferase, C-terminal domain EML485_23690 PF02798 Glutathione S-transferase, N-terminal domain EML485_23695 PF01638 HxlR-like helix-turn-helix EML485_23735 PF04956 TrbC/VIRB2 family EML485_23740 PF05101 Type IV secretory pathway, VirB3-like protein EML485_23745 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML485_23750 PF07996 Type IV secretion system proteins EML485_23760 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML485_23770 PF04335 VirB8 protein EML485_23775 PF03524 Conjugal transfer protein EML485_23780 PF03743 Bacterial conjugation TrbI-like protein EML485_23785 PF00437 Type II/IV secretion system protein EML485_23800 PF00072 Response regulator receiver domain EML485_23800 PF00486 Transcriptional regulatory protein, C terminal EML485_23805 PF11808 Phosphate regulon sensor protein PhoR EML485_23805 PF00512 His Kinase A (phospho-acceptor) domain EML485_23805 PF00989 PAS fold EML485_23805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_23810 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion EML485_23815 PF00005 ABC transporter EML485_23815 PF02687 FtsX-like permease family EML485_23815 PF12704 MacB-like periplasmic core domain EML485_23830 PF00107 Zinc-binding dehydrogenase EML485_23830 PF08240 Alcohol dehydrogenase GroES-like domain EML485_23840 PF03466 LysR substrate binding domain EML485_23840 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23850 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23850 PF03466 LysR substrate binding domain EML485_23855 PF00107 Zinc-binding dehydrogenase EML485_23855 PF08240 Alcohol dehydrogenase GroES-like domain EML485_23865 PF00561 alpha/beta hydrolase fold EML485_23870 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_23870 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_23875 PF00326 Prolyl oligopeptidase family EML485_23880 PF07739 TipAS antibiotic-recognition domain EML485_23880 PF13411 MerR HTH family regulatory protein EML485_23885 PF03466 LysR substrate binding domain EML485_23885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23890 PF03734 L,D-transpeptidase catalytic domain EML485_23890 PF17969 L,D-transpeptidase C-terminal domain EML485_23895 PF03466 LysR substrate binding domain EML485_23895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23900 PF00248 Aldo/keto reductase family EML485_23905 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_23905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_23915 PF05726 Pirin C-terminal cupin domain EML485_23915 PF02678 Pirin EML485_23920 PF00107 Zinc-binding dehydrogenase EML485_23920 PF08240 Alcohol dehydrogenase GroES-like domain EML485_23930 PF00171 Aldehyde dehydrogenase family EML485_23940 PF03466 LysR substrate binding domain EML485_23940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23950 PF03466 LysR substrate binding domain EML485_23950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23965 PF01047 MarR family EML485_23985 PF03466 LysR substrate binding domain EML485_23985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_23990 PF00571 CBS domain EML485_23990 PF00005 ABC transporter EML485_23995 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24000 PF04069 Substrate binding domain of ABC-type glycine betaine transport system EML485_24005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_24025 PF00561 alpha/beta hydrolase fold EML485_24030 PF00296 Luciferase-like monooxygenase EML485_24035 PF00171 Aldehyde dehydrogenase family EML485_24040 PF01613 Flavin reductase like domain EML485_24055 PF01042 Endoribonuclease L-PSP EML485_24065 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24070 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24075 PF00005 ABC transporter EML485_24080 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_24085 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family EML485_24090 PF00356 Bacterial regulatory proteins, lacI family EML485_24110 PF03466 LysR substrate binding domain EML485_24110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_24120 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24125 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24130 PF08402 TOBE domain EML485_24130 PF00005 ABC transporter EML485_24135 PF13454 FAD-NAD(P)-binding EML485_24140 PF01323 DSBA-like thioredoxin domain EML485_24155 PF01554 MatE EML485_24175 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family EML485_24175 PF00356 Bacterial regulatory proteins, lacI family EML485_24180 PF01261 Xylose isomerase-like TIM barrel EML485_24185 PF01408 Oxidoreductase family, NAD-binding Rossmann fold EML485_24185 PF02894 Oxidoreductase family, C-terminal alpha/beta domain EML485_24190 PF01261 Xylose isomerase-like TIM barrel EML485_24195 PF01638 HxlR-like helix-turn-helix EML485_24220 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_24220 PF00672 HAMP domain EML485_24230 PF00106 short chain dehydrogenase EML485_24235 PF00724 NADH:flavin oxidoreductase / NADH oxidase family EML485_24240 PF00561 alpha/beta hydrolase fold EML485_24245 PF00107 Zinc-binding dehydrogenase EML485_24245 PF08240 Alcohol dehydrogenase GroES-like domain EML485_24250 PF05406 WGR domain EML485_24255 PF00011 Hsp20/alpha crystallin family EML485_24265 PF00005 ABC transporter EML485_24270 PF02687 FtsX-like permease family EML485_24270 PF12704 MacB-like periplasmic core domain EML485_24285 PF05035 2-keto-3-deoxy-galactonokinase EML485_24290 PF00701 Dihydrodipicolinate synthetase family EML485_24295 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_24295 PF13378 Enolase C-terminal domain-like EML485_24305 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24310 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24315 PF17912 MalK OB fold domain EML485_24315 PF00005 ABC transporter EML485_24320 PF16363 GDP-mannose 4,6 dehydratase EML485_24325 PF01614 Bacterial transcriptional regulator EML485_24325 PF09339 IclR helix-turn-helix domain EML485_24335 PF02705 K+ potassium transporter EML485_24345 PF00817 impB/mucB/samB family EML485_24345 PF11799 impB/mucB/samB family C-terminal domain EML485_24360 PF01063 Amino-transferase class IV EML485_24365 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain EML485_24375 PF06418 CTP synthase N-terminus EML485_24375 PF00117 Glutamine amidotransferase class-I EML485_24380 PF00557 Metallopeptidase family M24 EML485_24380 PF01321 Creatinase/Prolidase N-terminal domain EML485_24385 PF13378 Enolase C-terminal domain-like EML485_24385 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain EML485_24390 PF01546 Peptidase family M20/M25/M40 EML485_24390 PF07687 Peptidase dimerisation domain EML485_24395 PF00005 ABC transporter EML485_24400 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24405 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_24410 PF07729 FCD domain EML485_24410 PF00392 Bacterial regulatory proteins, gntR family EML485_24440 PF04542 Sigma-70 region 2 EML485_24440 PF08281 Sigma-70, region 4 EML485_24450 PF18011 C-terminal domain found in long catalases EML485_24450 PF06628 Catalase-related immune-responsive EML485_24450 PF00199 Catalase EML485_24465 PF05974 Domain of unknown function (DUF892) EML485_24470 PF00561 alpha/beta hydrolase fold EML485_24475 PF17925 Tetracyclin repressor-like, C-terminal domain EML485_24475 PF00440 Bacterial regulatory proteins, tetR family EML485_24480 PF02625 XdhC and CoxI family EML485_24480 PF13478 XdhC Rossmann domain EML485_24485 PF00111 2Fe-2S iron-sulfur cluster binding domain EML485_24485 PF01799 [2Fe-2S] binding domain EML485_24490 PF00941 FAD binding domain in molybdopterin dehydrogenase EML485_24490 PF03450 CO dehydrogenase flavoprotein C-terminal domain EML485_24495 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase EML485_24495 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain EML485_24500 PF12804 MobA-like NTP transferase domain EML485_24500 PF00132 Bacterial transferase hexapeptide (six repeats) EML485_24520 PF00072 Response regulator receiver domain EML485_24520 PF00486 Transcriptional regulatory protein, C terminal EML485_24525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_24540 PF00072 Response regulator receiver domain EML485_24540 PF13426 PAS domain EML485_24540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_24545 PF06745 KaiC EML485_24560 PF00313 'Cold-shock' DNA-binding domain EML485_24565 PF00226 DnaJ domain EML485_24570 PF01820 D-ala D-ala ligase N-terminus EML485_24570 PF07478 D-ala D-ala ligase C-terminus EML485_24585 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_24585 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML485_24590 PF00005 ABC transporter EML485_24600 PF02653 Branched-chain amino acid transport system / permease component EML485_24610 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_24610 PF00005 ABC transporter EML485_24615 PF00296 Luciferase-like monooxygenase EML485_24620 PF03358 NADPH-dependent FMN reductase EML485_24625 PF07536 HWE histidine kinase EML485_24625 PF13426 PAS domain EML485_24625 PF13581 Histidine kinase-like ATPase domain EML485_24640 PF13458 Periplasmic binding protein EML485_24645 PF02653 Branched-chain amino acid transport system / permease component EML485_24655 PF12399 Branched-chain amino acid ATP-binding cassette transporter EML485_24655 PF00005 ABC transporter EML485_24660 PF09383 NIL domain EML485_24660 PF00005 ABC transporter EML485_24665 PF00795 Carbon-nitrogen hydrolase EML485_24675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain EML485_24675 PF07992 Pyridine nucleotide-disulphide oxidoreductase EML485_24685 PF13533 Biotin-lipoyl like EML485_24695 PF04632 Fusaric acid resistance protein family EML485_24705 PF12833 Helix-turn-helix domain EML485_24705 PF02311 AraC-like ligand binding domain EML485_24715 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_24715 PF03466 LysR substrate binding domain EML485_24720 PF00753 Metallo-beta-lactamase superfamily EML485_24730 PF13614 AAA domain EML485_24735 PF02195 ParB-like nuclease domain EML485_24735 PF07506 RepB plasmid partitioning protein EML485_24740 PF11800 Replication protein C C-terminal region EML485_24740 PF03428 Replication protein C N-terminal domain EML485_24745 PF00239 Resolvase, N terminal domain EML485_24750 PF07756 Protein of unknown function (DUF1612) EML485_24750 PF11972 HTH DNA binding domain EML485_24770 PF08808 RES domain EML485_24790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_24790 PF03466 LysR substrate binding domain EML485_24800 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24805 PF00005 ABC transporter EML485_24810 PF09084 NMT1/THI5 like EML485_24815 PF00296 Luciferase-like monooxygenase EML485_24820 PF00296 Luciferase-like monooxygenase EML485_24830 PF05199 GMC oxidoreductase EML485_24830 PF00732 GMC oxidoreductase EML485_24835 PF00561 alpha/beta hydrolase fold EML485_24855 PF02653 Branched-chain amino acid transport system / permease component EML485_24860 PF00005 ABC transporter EML485_24870 PF00753 Metallo-beta-lactamase superfamily EML485_24875 PF02771 Acyl-CoA dehydrogenase, N-terminal domain EML485_24875 PF02770 Acyl-CoA dehydrogenase, middle domain EML485_24875 PF08028 Acyl-CoA dehydrogenase, C-terminal domain EML485_24880 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_24885 PF00005 ABC transporter EML485_24885 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_24890 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24890 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_24895 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24905 PF00296 Luciferase-like monooxygenase EML485_24910 PF00296 Luciferase-like monooxygenase EML485_24915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_24915 PF03466 LysR substrate binding domain EML485_24925 PF17862 AAA+ lid domain EML485_24925 PF00004 ATPase family associated with various cellular activities (AAA) EML485_24925 PF01434 Peptidase family M41 EML485_24935 PF00296 Luciferase-like monooxygenase EML485_24940 PF09084 NMT1/THI5 like EML485_24945 PF00528 Binding-protein-dependent transport system inner membrane component EML485_24950 PF00005 ABC transporter EML485_24955 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_24955 PF03466 LysR substrate binding domain EML485_24965 PF01068 ATP dependent DNA ligase domain EML485_24965 PF04679 ATP dependent DNA ligase C terminal region EML485_24965 PF13298 DNA polymerase Ligase (LigD) EML485_24980 PF07733 Bacterial DNA polymerase III alpha NTPase domain EML485_24980 PF14579 Helix-hairpin-helix motif EML485_24980 PF02811 PHP domain EML485_24980 PF17657 Bacterial DNA polymerase III alpha subunit finger domain EML485_25000 PF02661 Fic/DOC family EML485_25000 PF17841 BID domain of Bartonella effector protein (Bep) EML485_25025 PF17762 HTH domain found in ParB protein EML485_25025 PF02195 ParB-like nuclease domain EML485_25045 PF03831 PhnA domain EML485_25045 PF08274 PhnA Zinc-Ribbon EML485_25065 PF05284 Protein of unknown function (DUF736) EML485_25090 PF00293 NUDIX domain EML485_25095 PF05284 Protein of unknown function (DUF736) EML485_25105 PF00216 Bacterial DNA-binding protein EML485_25125 PF02534 Type IV secretory system Conjugative DNA transfer EML485_25130 PF06412 Conjugal transfer protein TraD EML485_25135 PF07820 TraC-like protein EML485_25140 PF01443 Viral (Superfamily 1) RNA helicase EML485_25140 PF17841 BID domain of Bartonella effector protein (Bep) EML485_25140 PF03389 MobA/MobL family EML485_25145 PF10502 Signal peptidase, peptidase S26 EML485_25150 PF00795 Carbon-nitrogen hydrolase EML485_25155 PF06871 TraH_2 EML485_25160 PF09228 Prokaryotic Transcriptional repressor TraM EML485_25165 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain EML485_25165 PF13426 PAS domain EML485_25165 PF08447 PAS fold EML485_25175 PF03472 Autoinducer binding domain EML485_25175 PF00196 Bacterial regulatory proteins, luxR family EML485_25180 PF00128 Alpha amylase, catalytic domain EML485_25185 PF02690 Na+/Pi-cotransporter EML485_25195 PF08220 DeoR-like helix-turn-helix domain EML485_25195 PF00455 DeoR C terminal sensor domain EML485_25200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle EML485_25205 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_25205 PF00005 ABC transporter EML485_25210 PF08352 Oligopeptide/dipeptide transporter, C-terminal region EML485_25210 PF00005 ABC transporter EML485_25215 PF00528 Binding-protein-dependent transport system inner membrane component EML485_25220 PF12911 N-terminal TM domain of oligopeptide transport permease C EML485_25220 PF00528 Binding-protein-dependent transport system inner membrane component EML485_25225 PF03009 Glycerophosphoryl diester phosphodiesterase family EML485_25230 PF00459 Inositol monophosphatase family EML485_25255 PF00067 Cytochrome P450 EML485_25260 PF00067 Cytochrome P450 EML485_25275 PF06903 VirK protein EML485_25305 PF00512 His Kinase A (phospho-acceptor) domain EML485_25305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase EML485_25310 PF01464 Transglycosylase SLT domain EML485_25315 PF04956 TrbC/VIRB2 family EML485_25320 PF05101 Type IV secretory pathway, VirB3-like protein EML485_25325 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML485_25335 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML485_25340 PF17413 Outer membrane lipoprotein virB7 EML485_25345 PF04335 VirB8 protein EML485_25350 PF03524 Conjugal transfer protein EML485_25355 PF03743 Bacterial conjugation TrbI-like protein EML485_25360 PF00437 Type II/IV secretion system protein EML485_25365 PF00072 Response regulator receiver domain EML485_25365 PF00486 Transcriptional regulatory protein, C terminal EML485_25370 PF07181 VirC2 protein EML485_25375 PF07015 VirC1 protein EML485_25380 PF07328 T-DNA border endonuclease VirD1 EML485_25385 PF03432 Relaxase/Mobilisation nuclease domain EML485_25395 PF02534 Type IV secretory system Conjugative DNA transfer EML485_25415 PF12189 Single-strand DNA-binding protein EML485_25420 PF07229 VirE2 EML485_25435 PF05717 IS66 Orf2 like protein EML485_25470 PF00583 Acetyltransferase (GNAT) family EML485_25475 PF00589 Phage integrase family EML485_25475 PF13495 Phage integrase, N-terminal SAM-like domain EML485_25485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_25485 PF03466 LysR substrate binding domain EML485_25490 PF00528 Binding-protein-dependent transport system inner membrane component EML485_25495 PF00528 Binding-protein-dependent transport system inner membrane component EML485_25500 PF00497 Bacterial extracellular solute-binding proteins, family 3 EML485_25505 PF00005 ABC transporter EML485_25510 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family EML485_25510 PF03466 LysR substrate binding domain EML485_25520 PF03743 Bacterial conjugation TrbI-like protein EML485_25530 PF03524 Conjugal transfer protein EML485_25535 PF04335 VirB8 protein EML485_25540 PF04610 TrbL/VirB6 plasmid conjugal transfer protein EML485_25545 PF10907 Protein of unknown function (DUF2749) EML485_25555 PF03135 CagE, TrbE, VirB family, component of type IV transporter system EML485_25560 PF05101 Type IV secretory pathway, VirB3-like protein EML485_25565 PF04956 TrbC/VIRB2 family EML485_25570 PF00437 Type II/IV secretion system protein EML485_25575 PF00765 Autoinducer synthase