locus-tag class description Atu0001 PF03618 Kinase/pyrophosphorylase Atu0002 PF02545 Maf-like protein Atu0003 PF08501 Shikimate dehydrogenase substrate binding domain Atu0003 PF01488 Shikimate / quinate 5-dehydrogenase Atu0003 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Atu0004 PF01121 Dephospho-CoA kinase Atu0005 PF00929 Exonuclease Atu0006 PF02556 Preprotein translocase subunit SecB Atu0007 PF04186 FxsA cytoplasmic membrane protein Atu0009 PF06725 3D domain Atu0009 PF03562 MltA specific insert domain Atu0012 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0012 PF00986 DNA gyrase B subunit, carboxyl terminus Atu0012 PF01751 Toprim domain Atu0012 PF00204 DNA gyrase B Atu0014 PF01557 Fumarylacetoacetate (FAA) hydrolase family Atu0017 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase Atu0018 PF00291 Pyridoxal-phosphate dependent enzyme Atu0019 PF00290 Tryptophan synthase alpha chain Atu0020 PF01039 Carboxyl transferase domain Atu0021 PF02875 Mur ligase family, glutamate ligase domain Atu0021 PF08245 Mur ligase middle domain Atu0022 PF00085 Thioredoxin Atu0023 PF12705 PD-(D/E)XK nuclease superfamily Atu0023 PF00580 UvrD/REP helicase N-terminal domain Atu0023 PF13361 UvrD-like helicase C-terminal domain Atu0025 PF12804 MobA-like NTP transferase domain Atu0026 PF01636 Phosphotransferase enzyme family Atu0027 PF00512 His Kinase A (phospho-acceptor) domain Atu0027 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0029 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Atu0029 PF05221 S-adenosyl-L-homocysteine hydrolase Atu0030 PF00381 PTS HPr component phosphorylation site Atu0031 PF03830 PTS system sorbose subfamily IIB component Atu0031 PF03610 PTS system fructose IIA component Atu0032 PF07475 HPr Serine kinase C-terminal domain Atu0032 PF02603 HPr Serine kinase N terminus Atu0033 PF13756 Stimulus-sensing domain Atu0033 PF00512 His Kinase A (phospho-acceptor) domain Atu0033 PF00672 HAMP domain Atu0033 PF13755 Sensor N-terminal transmembrane domain Atu0033 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0034 PF00072 Response regulator receiver domain Atu0034 PF00486 Transcriptional regulatory protein, C terminal Atu0035 PF01293 Phosphoenolpyruvate carboxykinase Atu0036 PF00472 RF-1 domain Atu0037 PF00485 Phosphoribulokinase / Uridine kinase family Atu0038 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase Atu0039 PF00977 Histidine biosynthesis protein Atu0040 PF00977 Histidine biosynthesis protein Atu0041 PF00117 Glutamine amidotransferase class-I Atu0043 PF00475 Imidazoleglycerol-phosphate dehydratase Atu0044 PF00227 Proteasome subunit Atu0045 PF00004 ATPase family associated with various cellular activities (AAA) Atu0045 PF10431 C-terminal, D2-small domain, of ClpB protein Atu0045 PF07724 AAA domain (Cdc48 subfamily) Atu0047 PF01274 Malate synthase Atu0050 PF00072 Response regulator receiver domain Atu0051 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0051 PF00512 His Kinase A (phospho-acceptor) domain Atu0052 PF08482 ATP-dependent helicase C-terminal Atu0052 PF04408 Helicase associated domain (HA2) Atu0052 PF00271 Helicase conserved C-terminal domain Atu0052 PF00270 DEAD/DEAH box helicase Atu0061 PF00570 HRDC domain Atu0061 PF09382 RQC domain Atu0061 PF00271 Helicase conserved C-terminal domain Atu0061 PF00270 DEAD/DEAH box helicase Atu0061 PF16124 RecQ zinc-binding Atu0063 PF13407 Periplasmic binding protein domain Atu0064 PF02653 Branched-chain amino acid transport system / permease component Atu0065 PF00005 ABC transporter Atu0066 PF00485 Phosphoribulokinase / Uridine kinase family Atu0068 PF00462 Glutaredoxin Atu0069 PF07972 NrdI Flavodoxin like Atu0070 PF02867 Ribonucleotide reductase, barrel domain Atu0070 PF00317 Ribonucleotide reductase, all-alpha domain Atu0070 PF08343 Ribonucleotide reductase N-terminal Atu0071 PF00268 Ribonucleotide reductase, small chain Atu0073 PF02463 RecF/RecN/SMC N terminal domain Atu0074 PF00899 ThiF family Atu0074 PF00581 Rhodanese-like domain Atu0077 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu0077 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu0079 PF00294 pfkB family carbohydrate kinase Atu0081 PF08468 Methyltransferase small domain N-terminal Atu0081 PF05175 Methyltransferase small domain Atu0082 PF00013 KH domain Atu0082 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain Atu0082 PF01138 3' exoribonuclease family, domain 1 Atu0082 PF03725 3' exoribonuclease family, domain 2 Atu0082 PF00575 S1 RNA binding domain Atu0084 PF00312 Ribosomal protein S15 Atu0085 PF16198 tRNA pseudouridylate synthase B C-terminal domain Atu0085 PF09157 Pseudouridine synthase II TruB, C-terminal Atu0085 PF01509 TruB family pseudouridylate synthase (N terminal domain) Atu0086 PF02033 Ribosome-binding factor A Atu0087 PF11987 Translation-initiation factor 2 Atu0087 PF04760 Translation initiation factor IF-2, N-terminal region Atu0087 PF00009 Elongation factor Tu GTP binding domain Atu0087 PF03144 Elongation factor Tu domain 2 Atu0087 PF08364 Bacterial translation initiation factor IF-2 associated region Atu0089 PF00575 S1 RNA binding domain Atu0089 PF08529 NusA N-terminal domain Atu0089 PF13184 NusA-like KH domain Atu0090 PF02576 RimP N-terminal domain Atu0090 PF17384 RimP C-terminal SH3 domain Atu0091 PF05977 Transmembrane secretion effector Atu0092 PF13406 Transglycosylase SLT domain Atu0093 PF02132 RecR protein Atu0093 PF13662 Toprim domain Atu0095 PF02575 YbaB/EbfC DNA-binding family Atu0096 PF12169 DNA polymerase III subunits gamma and tau domain III Atu0096 PF12170 DNA polymerase III tau subunit V interacting with alpha Atu0096 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding Atu0098 PF00293 NUDIX domain Atu0098 PF09297 NADH pyrophosphatase zinc ribbon domain Atu0098 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain Atu0099 PF00800 Prephenate dehydratase Atu0099 PF01817 Chorismate mutase type II Atu0100 PF02348 Cytidylyltransferase Atu0101 PF00034 Cytochrome c Atu0102 PF02397 Bacterial sugar transferase Atu0103 PF00905 Penicillin binding protein transpeptidase domain Atu0103 PF00912 Transglycosylase Atu0104 PF04073 Aminoacyl-tRNA editing domain Atu0106 PF00313 'Cold-shock' DNA-binding domain Atu0108 PF07687 Peptidase dimerisation domain Atu0108 PF01546 Peptidase family M20/M25/M40 Atu0109 PF01047 MarR family Atu0110 PF01612 3'-5' exonuclease Atu0110 PF00476 DNA polymerase family A Atu0110 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain Atu0110 PF01367 5'-3' exonuclease, C-terminal SAM fold Atu0112 PF01783 Ribosomal L32p protein family Atu0113 PF02743 Cache domain Atu0113 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0113 PF00512 His Kinase A (phospho-acceptor) domain Atu0114 PF00158 Sigma-54 interaction domain Atu0114 PF00072 Response regulator receiver domain Atu0114 PF02954 Bacterial regulatory protein, Fis family Atu0116 PF03401 Tripartite tricarboxylate transporter family receptor Atu0117 PF07331 Tripartite tricarboxylate transporter TctB family Atu0118 PF01970 Tripartite tricarboxylate transporter TctA family Atu0119 PF04102 SlyX Atu0121 PF00684 DnaJ central domain Atu0121 PF00226 DnaJ domain Atu0121 PF01556 DnaJ C terminal domain Atu0122 PF00012 Hsp70 protein Atu0125 PF01625 Peptide methionine sulfoxide reductase Atu0130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Atu0131 PF01048 Phosphorylase superfamily Atu0132 PF01791 DeoC/LacD family aldolase Atu0133 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain Atu0133 PF00591 Glycosyl transferase family, a/b domain Atu0133 PF02885 Glycosyl transferase family, helical bundle domain Atu0136 PF00962 Adenosine/AMP deaminase Atu0137 PF01676 Metalloenzyme superfamily Atu0139 PF03626 Prokaryotic Cytochrome C oxidase subunit IV Atu0140 PF00510 Cytochrome c oxidase subunit III Atu0141 PF00115 Cytochrome C and Quinol oxidase polypeptide I Atu0142 PF06481 COX Aromatic Rich Motif Atu0142 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Atu0143 PF00083 Sugar (and other) transporter Atu0143 PF07690 Major Facilitator Superfamily Atu0145 PF04898 Glutamate synthase central domain Atu0145 PF00310 Glutamine amidotransferases class-II Atu0145 PF01645 Conserved region in glutamate synthase Atu0145 PF01493 GXGXG motif Atu0146 PF00175 Oxidoreductase NAD-binding domain Atu0146 PF00258 Flavodoxin Atu0146 PF00667 FAD binding domain Atu0150 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu0150 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu0151 PF07977 FabA-like domain Atu0154 PF03458 UPF0126 domain Atu0156 PF06912 Protein of unknown function (DUF1275) Atu0158 PF00528 Binding-protein-dependent transport system inner membrane component Atu0159 PF00005 ABC transporter Atu0160 PF00392 Bacterial regulatory proteins, gntR family Atu0160 PF07702 UTRA domain Atu0161 PF01618 MotA/TolQ/ExbB proton channel family Atu0162 PF02472 Biopolymer transport protein ExbD/TolR Atu0164 PF02615 Malate/L-lactate dehydrogenase Atu0168 PF00625 Guanylate kinase Atu0169 PF07969 Amidohydrolase family Atu0170 PF06299 Protein of unknown function (DUF1045) Atu0171 PF00528 Binding-protein-dependent transport system inner membrane component Atu0172 PF00528 Binding-protein-dependent transport system inner membrane component Atu0174 PF00005 ABC transporter Atu0176 PF00005 ABC transporter Atu0177 PF00005 ABC transporter Atu0178 PF06007 Phosphonate metabolism protein PhnJ Atu0179 PF05861 Bacterial phosphonate metabolism protein (PhnI) Atu0180 PF05845 Bacterial phosphonate metabolism protein (PhnH) Atu0181 PF06754 Phosphonate metabolism protein PhnG Atu0182 PF07702 UTRA domain Atu0182 PF00392 Bacterial regulatory proteins, gntR family Atu0183 PF05173 Dihydrodipicolinate reductase, C-terminus Atu0183 PF01113 Dihydrodipicolinate reductase, N-terminus Atu0184 PF02685 Glucokinase Atu0185 PF02142 MGS-like domain Atu0186 PF03411 Penicillin-insensitive murein endopeptidase Atu0187 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu0188 PF00528 Binding-protein-dependent transport system inner membrane component Atu0189 PF00528 Binding-protein-dependent transport system inner membrane component Atu0189 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu0190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu0190 PF00005 ABC transporter Atu0193 PF00120 Glutamine synthetase, catalytic domain Atu0194 PF01266 FAD dependent oxidoreductase Atu0196 PF00528 Binding-protein-dependent transport system inner membrane component Atu0197 PF00005 ABC transporter Atu0198 PF00528 Binding-protein-dependent transport system inner membrane component Atu0199 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Atu0201 PF02082 Transcriptional regulator Atu0202 PF13416 Bacterial extracellular solute-binding protein Atu0204 PF05987 Bacterial protein of unknown function (DUF898) Atu0205 PF00171 Aldehyde dehydrogenase family Atu0207 PF03466 LysR substrate binding domain Atu0207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0208 PF00892 EamA-like transporter family Atu0211 PF00877 NlpC/P60 family Atu0213 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family Atu0213 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain Atu0214 PF02789 Cytosol aminopeptidase family, N-terminal domain Atu0214 PF00883 Cytosol aminopeptidase family, catalytic domain Atu0218 PF00437 Type II/IV secretion system protein Atu0221 PF00263 Bacterial type II and III secretion system protein Atu0221 PF04972 BON domain Atu0221 PF13629 Pilus formation protein N terminal region Atu0232 PF07411 Domain of unknown function (DUF1508) Atu0233 PF01183 Glycosyl hydrolases family 25 Atu0234 PF00892 EamA-like transporter family Atu0235 PF00155 Aminotransferase class I and II Atu0235 PF00392 Bacterial regulatory proteins, gntR family Atu0241 PF06421 GTP-binding protein LepA C-terminus Atu0241 PF03144 Elongation factor Tu domain 2 Atu0241 PF00009 Elongation factor Tu GTP binding domain Atu0241 PF00679 Elongation factor G C-terminus Atu0242 PF00795 Carbon-nitrogen hydrolase Atu0248 PF02311 AraC-like ligand binding domain Atu0248 PF12833 Helix-turn-helix domain Atu0249 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu0254 PF00707 Translation initiation factor IF-3, C-terminal domain Atu0254 PF05198 Translation initiation factor IF-3, N-terminal domain Atu0255 PF01632 Ribosomal protein L35 Atu0256 PF00453 Ribosomal protein L20 Atu0258 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain Atu0258 PF01409 tRNA synthetases class II core domain (F) Atu0259 PF01588 Putative tRNA binding domain Atu0259 PF03147 Ferredoxin-fold anticodon binding domain Atu0259 PF03484 tRNA synthetase B5 domain Atu0259 PF03483 B3/4 domain Atu0259 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain Atu0260 PF00248 Aldo/keto reductase family Atu0261 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0261 PF03466 LysR substrate binding domain Atu0263 PF00248 Aldo/keto reductase family Atu0264 PF01965 DJ-1/PfpI family Atu0264 PF12833 Helix-turn-helix domain Atu0266 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu0266 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu0269 PF13742 OB-fold nucleic acid binding domain Atu0269 PF02601 Exonuclease VII, large subunit Atu0270 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu0270 PF13378 Enolase C-terminal domain-like Atu0271 PF07729 FCD domain Atu0271 PF00392 Bacterial regulatory proteins, gntR family Atu0272 PF01047 MarR family Atu0273 PF00892 EamA-like transporter family Atu0274 PF02073 Thermophilic metalloprotease (M29) Atu0275 PF04073 Aminoacyl-tRNA editing domain Atu0276 PF03960 ArsC family Atu0279 PF00440 Bacterial regulatory proteins, tetR family Atu0281 PF00958 GMP synthase C terminal domain Atu0281 PF00117 Glutamine amidotransferase class-I Atu0284 PF03073 TspO/MBR family Atu0289 PF01189 16S rRNA methyltransferase RsmB/F Atu0289 PF01029 NusB family Atu0290 PF03330 Lytic transglycolase Atu0292 PF08331 Domain of unknown function (DUF1730) Atu0293 PF13417 Glutathione S-transferase, N-terminal domain Atu0293 PF00043 Glutathione S-transferase, C-terminal domain Atu0294 PF02673 Bacitracin resistance protein BacA Atu0298 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family Atu0300 PF00398 Ribosomal RNA adenine dimethylase Atu0301 PF02768 DNA polymerase III beta subunit, C-terminal domain Atu0301 PF02767 DNA polymerase III beta subunit, central domain Atu0301 PF00712 DNA polymerase III beta subunit, N-terminal domain Atu0302 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu0303 PF02021 Uncharacterised protein family UPF0102 Atu0304 PF12464 Maltose acetyltransferase Atu0304 PF14602 Hexapeptide repeat of succinyl-transferase Atu0305 PF13416 Bacterial extracellular solute-binding protein Atu0306 PF00528 Binding-protein-dependent transport system inner membrane component Atu0307 PF00528 Binding-protein-dependent transport system inner membrane component Atu0308 PF00005 ABC transporter Atu0310 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Atu0310 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Atu0311 PF01078 Magnesium chelatase, subunit ChlI Atu0311 PF13335 Magnesium chelatase, subunit ChlI C-terminal Atu0312 PF00291 Pyridoxal-phosphate dependent enzyme Atu0313 PF01810 LysE type translocator Atu0314 PF00692 dUTPase Atu0315 PF03144 Elongation factor Tu domain 2 Atu0315 PF00009 Elongation factor Tu GTP binding domain Atu0315 PF16658 Class II release factor RF3, C-terminal domain Atu0316 PF04127 DNA / pantothenate metabolism flavoprotein Atu0316 PF02441 Flavoprotein Atu0319 PF03109 ABC1 family Atu0320 PF01209 ubiE/COQ5 methyltransferase family Atu0321 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain Atu0321 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain Atu0321 PF06827 Zinc finger found in FPG and IleRS Atu0322 PF00378 Enoyl-CoA hydratase/isomerase Atu0323 PF01649 Ribosomal protein S20 Atu0324 PF11638 DnaA N-terminal domain Atu0324 PF08299 Bacterial dnaA protein helix-turn-helix Atu0324 PF00308 Bacterial dnaA protein Atu0325 PF06969 HemN C-terminal domain Atu0325 PF04055 Radical SAM superfamily Atu0326 PF01725 Ham1 family Atu0327 PF01138 3' exoribonuclease family, domain 1 Atu0327 PF03725 3' exoribonuclease family, domain 2 Atu0328 PF01628 HrcA protein C terminal domain Atu0329 PF01025 GrpE Atu0330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 Atu0331 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein Atu0331 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus Atu0332 PF04963 Sigma-54 factor, core binding domain Atu0332 PF00309 Sigma-54 factor, Activator interacting domain (AID) Atu0332 PF04552 Sigma-54, DNA binding domain Atu0333 PF00005 ABC transporter Atu0334 PF03968 OstA-like protein Atu0337 PF01343 Peptidase family S49 Atu0338 PF00216 Bacterial DNA-binding protein Atu0340 PF10672 S-adenosylmethionine-dependent methyltransferase Atu0340 PF01170 Putative RNA methylase family UPF0020 Atu0340 PF02926 THUMP domain Atu0341 PF00588 SpoU rRNA Methylase family Atu0341 PF08032 RNA 2'-O ribose methyltransferase substrate binding Atu0342 PF01252 Signal peptidase (SPase) II Atu0343 PF00072 Response regulator receiver domain Atu0343 PF01627 Hpt domain Atu0343 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0343 PF00672 HAMP domain Atu0343 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Atu0343 PF00512 His Kinase A (phospho-acceptor) domain Atu0345 PF00488 MutS domain V Atu0345 PF05188 MutS domain II Atu0345 PF05192 MutS domain III Atu0345 PF01624 MutS domain I Atu0345 PF05190 MutS family domain IV Atu0346 PF01966 HD domain Atu0346 PF08335 GlnD PII-uridylyltransferase Atu0346 PF01842 ACT domain Atu0346 PF01909 Nucleotidyltransferase domain Atu0347 PF03023 Lipid II flippase MurJ Atu0349 PF00579 tRNA synthetases class I (W and Y) Atu0351 PF01106 NifU-like domain Atu0352 PF00814 Glycoprotease family Atu0354 PF01475 Ferric uptake regulator family Atu0355 PF01553 Acyltransferase Atu0356 PF01938 TRAM domain Atu0356 PF04055 Radical SAM superfamily Atu0356 PF00919 Uncharacterized protein family UPF0004 Atu0357 PF02562 PhoH-like protein Atu0358 PF02130 Uncharacterized protein family UPF0054 Atu0359 PF03471 Transporter associated domain Atu0359 PF00571 CBS domain Atu0360 PF00795 Carbon-nitrogen hydrolase Atu0361 PF01381 Helix-turn-helix Atu0362 PF02772 S-adenosylmethionine synthetase, central domain Atu0362 PF02773 S-adenosylmethionine synthetase, C-terminal domain Atu0362 PF00438 S-adenosylmethionine synthetase, N-terminal domain Atu0363 PF02390 Putative methyltransferase Atu0364 PF00294 pfkB family carbohydrate kinase Atu0365 PF02646 RmuC family Atu0366 PF01327 Polypeptide deformylase Atu0367 PF00551 Formyl transferase Atu0367 PF02911 Formyl transferase, C-terminal domain Atu0368 PF01416 tRNA pseudouridine synthase Atu0370 PF07687 Peptidase dimerisation domain Atu0370 PF01546 Peptidase family M20/M25/M40 Atu0371 PF14602 Hexapeptide repeat of succinyl-transferase Atu0371 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal Atu0371 PF00132 Bacterial transferase hexapeptide (six repeats) Atu0373 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0373 PF00672 HAMP domain Atu0374 PF01156 Inosine-uridine preferring nucleoside hydrolase Atu0375 PF00011 Hsp20/alpha crystallin family Atu0380 PF00696 Amino acid kinase family Atu0383 PF01926 50S ribosome-binding GTPase Atu0384 PF14849 YidC periplasmic domain Atu0384 PF02096 60Kd inner membrane protein Atu0385 PF00825 Ribonuclease P Atu0387 PF00672 HAMP domain Atu0387 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0387 PF02203 Tar ligand binding domain homologue Atu0388 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0388 PF00672 HAMP domain Atu0388 PF00512 His Kinase A (phospho-acceptor) domain Atu0390 PF01209 ubiE/COQ5 methyltransferase family Atu0391 PF00005 ABC transporter Atu0392 PF00528 Binding-protein-dependent transport system inner membrane component Atu0393 PF00528 Binding-protein-dependent transport system inner membrane component Atu0395 PF00149 Calcineurin-like phosphoesterase Atu0396 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain Atu0396 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain Atu0398 PF05544 Proline racemase Atu0399 PF01979 Amidohydrolase family Atu0400 PF00156 Phosphoribosyl transferase domain Atu0401 PF00294 pfkB family carbohydrate kinase Atu0404 PF00342 Phosphoglucose isomerase Atu0405 PF00501 AMP-binding enzyme Atu0405 PF13193 AMP-binding enzyme C-terminal domain Atu0406 PF00005 ABC transporter Atu0406 PF08402 TOBE domain Atu0408 PF00528 Binding-protein-dependent transport system inner membrane component Atu0409 PF07715 TonB-dependent Receptor Plug Domain Atu0409 PF00593 TonB dependent receptor Atu0413 PF01679 Proteolipid membrane potential modulator Atu0418 PF03976 Polyphosphate kinase 2 (PPK2) Atu0419 PF16736 Single Cache-like Atu0419 PF00989 PAS fold Atu0419 PF00512 His Kinase A (phospho-acceptor) domain Atu0419 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0420 PF12849 PBP superfamily domain Atu0421 PF00528 Binding-protein-dependent transport system inner membrane component Atu0422 PF00528 Binding-protein-dependent transport system inner membrane component Atu0423 PF00005 ABC transporter Atu0424 PF01895 PhoU domain Atu0425 PF00486 Transcriptional regulatory protein, C terminal Atu0425 PF00072 Response regulator receiver domain Atu0428 PF00202 Aminotransferase class-III Atu0429 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Atu0429 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Atu0430 PF01430 Hsp33 protein Atu0431 PF04379 ApaG domain Atu0432 PF01053 Cys/Met metabolism PLP-dependent enzyme Atu0434 PF00692 dUTPase Atu0438 PF00589 Phage integrase family Atu0472 PF02469 Fasciclin domain Atu0476 PF00230 Major intrinsic protein Atu0484 PF00196 Bacterial regulatory proteins, luxR family Atu0484 PF00072 Response regulator receiver domain Atu0486 PF01180 Dihydroorotate dehydrogenase Atu0489 PF08241 Methyltransferase domain Atu0493 PF02082 Transcriptional regulator Atu0494 PF00270 DEAD/DEAH box helicase Atu0494 PF08494 DEAD/H associated Atu0494 PF00271 Helicase conserved C-terminal domain Atu0498 PF01925 Sulfite exporter TauE/SafE Atu0501 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu0501 PF02770 Acyl-CoA dehydrogenase, middle domain Atu0501 PF12806 Acetyl-CoA dehydrogenase C-terminal like Atu0501 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu0502 PF00108 Thiolase, N-terminal domain Atu0502 PF02803 Thiolase, C-terminal domain Atu0503 PF00378 Enoyl-CoA hydratase/isomerase Atu0503 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Atu0503 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Atu0507 PF03334 Na+/H+ antiporter subunit Atu0508 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Atu0509 PF01899 Na+/H+ ion antiporter subunit Atu0510 PF00361 Proton-conducting membrane transporter Atu0511 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Atu0514 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0517 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0517 PF01584 CheW-like domain Atu0517 PF01627 Hpt domain Atu0517 PF02895 Signal transducing histidine kinase, homodimeric domain Atu0518 PF01739 CheR methyltransferase, SAM binding domain Atu0518 PF03705 CheR methyltransferase, all-alpha domain Atu0519 PF01339 CheB methylesterase Atu0519 PF00072 Response regulator receiver domain Atu0520 PF00072 Response regulator receiver domain Atu0521 PF03975 CheD chemotactic sensory transduction Atu0523 PF08345 Flagellar M-ring protein C-terminal Atu0523 PF01514 Secretory protein of YscJ/FliF family Atu0524 PF03472 Autoinducer binding domain Atu0524 PF00196 Bacterial regulatory proteins, luxR family Atu0526 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0526 PF00672 HAMP domain Atu0527 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0527 PF00512 His Kinase A (phospho-acceptor) domain Atu0527 PF01627 Hpt domain Atu0527 PF00072 Response regulator receiver domain Atu0527 PF00672 HAMP domain Atu0528 PF01741 Large-conductance mechanosensitive channel, MscL Atu0529 PF00155 Aminotransferase class I and II Atu0530 PF01370 NAD dependent epimerase/dehydratase family Atu0533 PF02545 Maf-like protein Atu0534 PF01176 Translation initiation factor 1A / IF-1 Atu0536 PF06793 Uncharacterised protein family (UPF0262) Atu0537 PF00815 Histidinol dehydrogenase Atu0539 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Atu0542 PF00669 Bacterial flagellin N-terminal helical region Atu0542 PF00700 Bacterial flagellin C-terminal helical region Atu0543 PF00700 Bacterial flagellin C-terminal helical region Atu0543 PF00669 Bacterial flagellin N-terminal helical region Atu0545 PF00700 Bacterial flagellin C-terminal helical region Atu0545 PF00669 Bacterial flagellin N-terminal helical region Atu0546 PF00813 FliP family Atu0548 PF02107 Flagellar L-ring protein Atu0550 PF02119 Flagellar P-ring protein Atu0551 PF13144 Chaperone for flagella basal body P-ring formation Atu0552 PF00460 Flagella basal body rod protein Atu0552 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Atu0553 PF02049 Flagellar hook-basal body complex protein FliE Atu0554 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Atu0555 PF00460 Flagella basal body rod protein Atu0557 PF18269 T3SS EscN ATPase C-terminal domain Atu0557 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Atu0558 PF00460 Flagella basal body rod protein Atu0558 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Atu0560 PF01618 MotA/TolQ/ExbB proton channel family Atu0561 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Atu0562 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term Atu0563 PF01706 FliG C-terminal domain Atu0563 PF14841 FliG middle domain Atu0563 PF14842 FliG N-terminal domain Atu0564 PF01312 FlhB HrpN YscU SpaS Family Atu0567 PF00700 Bacterial flagellin C-terminal helical region Atu0567 PF00669 Bacterial flagellin N-terminal helical region Atu0569 PF00691 OmpA family Atu0569 PF13677 Membrane MotB of proton-channel complex MotA/MotB Atu0571 PF02120 Flagellar hook-length control protein FliK Atu0573 PF00486 Transcriptional regulatory protein, C terminal Atu0574 PF06429 Flagellar basal body rod FlgEFG protein C-terminal Atu0574 PF00460 Flagella basal body rod protein Atu0574 PF07559 Flagellar basal body protein FlaE Atu0578 PF07378 Flagellar protein FlbT Atu0579 PF03963 Flagellar hook capping protein - N-terminal region Atu0580 PF01313 Bacterial export proteins, family 3 Atu0581 PF00771 FHIPEP family Atu0582 PF01311 Bacterial export proteins, family 1 Atu0589 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain Atu0589 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain Atu0590 PF00356 Bacterial regulatory proteins, lacI family Atu0591 PF01547 Bacterial extracellular solute-binding protein Atu0592 PF00528 Binding-protein-dependent transport system inner membrane component Atu0593 PF00528 Binding-protein-dependent transport system inner membrane component Atu0594 PF00128 Alpha amylase, catalytic domain Atu0595 PF00005 ABC transporter Atu0595 PF17912 MalK OB fold domain Atu0595 PF03459 TOBE domain Atu0598 PF00920 Dehydratase family Atu0599 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase Atu0600 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Atu0600 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Atu0601 PF01266 FAD dependent oxidoreductase Atu0602 PF00120 Glutamine synthetase, catalytic domain Atu0607 PF00463 Isocitrate lyase family Atu0608 PF01381 Helix-turn-helix Atu0608 PF06114 IrrE N-terminal-like domain Atu0608 PF09856 Predicted transcriptional regulator (DUF2083) Atu0609 PF13416 Bacterial extracellular solute-binding protein Atu0610 PF00005 ABC transporter Atu0610 PF08402 TOBE domain Atu0611 PF00528 Binding-protein-dependent transport system inner membrane component Atu0612 PF00528 Binding-protein-dependent transport system inner membrane component Atu0614 PF00512 His Kinase A (phospho-acceptor) domain Atu0614 PF00989 PAS fold Atu0614 PF13188 PAS domain Atu0614 PF13426 PAS domain Atu0614 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0619 PF02541 Ppx/GppA phosphatase family Atu0620 PF01728 FtsJ-like methyltransferase Atu0621 PF07690 Major Facilitator Superfamily Atu0622 PF00753 Metallo-beta-lactamase superfamily Atu0624 PF00571 CBS domain Atu0624 PF00478 IMP dehydrogenase / GMP reductase domain Atu0626 PF08240 Alcohol dehydrogenase GroES-like domain Atu0626 PF00107 Zinc-binding dehydrogenase Atu0627 PF01738 Dienelactone hydrolase family Atu0628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0628 PF00672 HAMP domain Atu0628 PF00512 His Kinase A (phospho-acceptor) domain Atu0629 PF00072 Response regulator receiver domain Atu0629 PF00486 Transcriptional regulatory protein, C terminal Atu0631 PF00994 Probable molybdopterin binding domain Atu0632 PF08544 GHMP kinases C terminal Atu0632 PF00288 GHMP kinases N terminal domain Atu0634 PF00348 Polyprenyl synthetase Atu0637 PF06965 Na+/H+ antiporter 1 Atu0637 PF01343 Peptidase family S49 Atu0639 PF02091 Glycyl-tRNA synthetase alpha subunit Atu0641 PF04011 LemA family Atu0642 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) Atu0644 PF02092 Glycyl-tRNA synthetase beta subunit Atu0644 PF05746 DALR anticodon binding domain Atu0645 PF04463 Protein of unknown function (DUF523) Atu0646 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0646 PF00672 HAMP domain Atu0647 PF02843 Phosphoribosylglycinamide synthetase, C domain Atu0647 PF02844 Phosphoribosylglycinamide synthetase, N domain Atu0647 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain Atu0648 PF00575 S1 RNA binding domain Atu0648 PF17674 HHH domain Atu0648 PF09371 Tex-like protein N-terminal domain Atu0648 PF16921 Tex protein YqgF-like domain Atu0651 PF01040 UbiA prenyltransferase family Atu0654 PF03466 LysR substrate binding domain Atu0654 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0656 PF04107 Glutamate-cysteine ligase family 2(GCS2) Atu0657 PF04452 RNA methyltransferase Atu0658 PF01384 Phosphate transporter family Atu0660 PF05116 Sucrose-6F-phosphate phosphohydrolase Atu0661 PF13439 Glycosyltransferase Family 4 Atu0661 PF00534 Glycosyl transferases group 1 Atu0662 PF07729 FCD domain Atu0662 PF00392 Bacterial regulatory proteins, gntR family Atu0664 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0664 PF03466 LysR substrate binding domain Atu0665 PF02913 FAD linked oxidases, C-terminal domain Atu0665 PF01565 FAD binding domain Atu0666 PF01565 FAD binding domain Atu0666 PF02913 FAD linked oxidases, C-terminal domain Atu0667 PF13183 4Fe-4S dicluster domain Atu0667 PF02754 Cysteine-rich domain Atu0669 PF03734 L,D-transpeptidase catalytic domain Atu0669 PF17969 L,D-transpeptidase C-terminal domain Atu0670 PF13302 Acetyltransferase (GNAT) domain Atu0670 PF13673 Acetyltransferase (GNAT) domain Atu0670 PF00117 Glutamine amidotransferase class-I Atu0670 PF03352 Methyladenine glycosylase Atu0670 PF00958 GMP synthase C terminal domain Atu0671 PF03601 Conserved hypothetical protein 698 Atu0672 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0672 PF03466 LysR substrate binding domain Atu0676 PF03129 Anticodon binding domain Atu0676 PF13393 Histidyl-tRNA synthetase Atu0678 PF13393 Histidyl-tRNA synthetase Atu0679 PF01634 ATP phosphoribosyltransferase Atu0680 PF07681 DoxX Atu0682 PF00118 TCP-1/cpn60 chaperonin family Atu0683 PF00166 Chaperonin 10 Kd subunit Atu0685 PF01687 Riboflavin kinase Atu0685 PF06574 FAD synthetase Atu0686 PF08264 Anticodon-binding domain of tRNA Atu0686 PF00133 tRNA synthetases class I (I, L, M and V) Atu0688 PF14437 MafB19-like deaminase Atu0689 PF00849 RNA pseudouridylate synthase Atu0689 PF01479 S4 domain Atu0691 PF01734 Patatin-like phospholipase Atu0692 PF00999 Sodium/hydrogen exchanger family Atu0692 PF02254 TrkA-N domain Atu0693 PF01523 Putative modulator of DNA gyrase Atu0694 PF00459 Inositol monophosphatase family Atu0697 PF02606 Tetraacyldisaccharide-1-P 4'-kinase Atu0699 PF01119 DNA mismatch repair protein, C-terminal domain Atu0699 PF08676 MutL C terminal dimerisation domain Atu0700 PF09456 RcsC Alpha-Beta-Loop (ABL) Atu0700 PF00512 His Kinase A (phospho-acceptor) domain Atu0700 PF00072 Response regulator receiver domain Atu0700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0701 PF00563 EAL domain Atu0701 PF00990 Diguanylate cyclase, GGDEF domain Atu0701 PF03707 Bacterial signalling protein N terminal repeat Atu0701 PF13188 PAS domain Atu0702 PF08450 SMP-30/Gluconolactonase/LRE-like region Atu0703 PF01081 KDPG and KHG aldolase Atu0704 PF05035 2-keto-3-deoxy-galactonokinase Atu0707 PF03472 Autoinducer binding domain Atu0707 PF00196 Bacterial regulatory proteins, luxR family Atu0709 PF10609 NUBPL iron-transfer P-loop NTPase Atu0710 PF01544 CorA-like Mg2+ transporter protein Atu0711 PF02705 K+ potassium transporter Atu0713 PF09527 Putative F0F1-ATPase subunit Ca2+/Mg2+ transporter Atu0714 PF00119 ATP synthase A chain Atu0715 PF00137 ATP synthase subunit C Atu0716 PF00430 ATP synthase B/B' CF(0) Atu0717 PF00430 ATP synthase B/B' CF(0) Atu0719 PF00132 Bacterial transferase hexapeptide (six repeats) Atu0720 PF01351 Ribonuclease HII Atu0723 PF01565 FAD binding domain Atu0723 PF02913 FAD linked oxidases, C-terminal domain Atu0724 PF03481 Putative GTP-binding controlling metal-binding Atu0724 PF01300 Telomere recombination Atu0726 PF00848 Ring hydroxylating alpha subunit (catalytic domain) Atu0726 PF00355 Rieske [2Fe-2S] domain Atu0727 PF00175 Oxidoreductase NAD-binding domain Atu0727 PF00111 2Fe-2S iron-sulfur cluster binding domain Atu0727 PF00970 Oxidoreductase FAD-binding domain Atu0728 PF07886 BA14K-like protein Atu0730 PF07886 BA14K-like protein Atu0732 PF12806 Acetyl-CoA dehydrogenase C-terminal like Atu0732 PF02770 Acyl-CoA dehydrogenase, middle domain Atu0732 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu0732 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu0735 PF05958 tRNA (Uracil-5-)-methyltransferase Atu0736 PF01479 S4 domain Atu0736 PF01728 FtsJ-like methyltransferase Atu0738 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0738 PF00672 HAMP domain Atu0745 PF13292 1-deoxy-D-xylulose-5-phosphate synthase Atu0745 PF02779 Transketolase, pyrimidine binding domain Atu0745 PF02780 Transketolase, C-terminal domain Atu0746 PF02678 Pirin Atu0746 PF05726 Pirin C-terminal cupin domain Atu0747 PF02609 Exonuclease VII small subunit Atu0748 PF00850 Histone deacetylase domain Atu0749 PF02632 BioY family Atu0750 PF02361 Cobalt transport protein Atu0751 PF00005 ABC transporter Atu0752 PF06224 Winged helix DNA-binding domain Atu0754 PF01264 Chorismate synthase Atu0756 PF00300 Histidine phosphatase superfamily (branch 1) Atu0758 PF00684 DnaJ central domain Atu0758 PF00226 DnaJ domain Atu0758 PF01556 DnaJ C terminal domain Atu0760 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region Atu0760 PF01243 Pyridoxamine 5'-phosphate oxidase Atu0763 PF13419 Haloacid dehalogenase-like hydrolase Atu0765 PF01523 Putative modulator of DNA gyrase Atu0767 PF00116 Cytochrome C oxidase subunit II, periplasmic domain Atu0767 PF02790 Cytochrome C oxidase subunit II, transmembrane domain Atu0768 PF00115 Cytochrome C and Quinol oxidase polypeptide I Atu0769 PF01040 UbiA prenyltransferase family Atu0770 PF04442 Cytochrome c oxidase assembly protein CtaG/Cox11 Atu0771 PF00510 Cytochrome c oxidase subunit III Atu0773 PF02104 SURF1 family Atu0774 PF02401 LytB protein Atu0775 PF01636 Phosphotransferase enzyme family Atu0776 PF00075 RNase H Atu0779 PF08534 Redoxin Atu0779 PF00462 Glutaredoxin Atu0781 PF02622 Uncharacterized ACR, COG1678 Atu0783 PF15887 Putative zinc-binding metallo-peptidase Atu0783 PF10005 zinc-ribbon domain Atu0784 PF00990 Diguanylate cyclase, GGDEF domain Atu0784 PF00563 EAL domain Atu0784 PF13185 GAF domain Atu0785 PF13302 Acetyltransferase (GNAT) domain Atu0786 PF00675 Insulinase (Peptidase family M16) Atu0786 PF05193 Peptidase M16 inactive domain Atu0787 PF00291 Pyridoxal-phosphate dependent enzyme Atu0787 PF14821 Threonine synthase N terminus Atu0790 PF13419 Haloacid dehalogenase-like hydrolase Atu0791 PF07729 FCD domain Atu0791 PF00392 Bacterial regulatory proteins, gntR family Atu0794 PF18755 Restriction Enzyme Adenine Methylase Associated Atu0794 PF01555 DNA methylase Atu0798 PF14815 NUDIX domain Atu0798 PF00730 HhH-GPD superfamily base excision DNA repair protein Atu0800 PF13462 Thioredoxin Atu0801 PF02463 RecF/RecN/SMC N terminal domain Atu0802 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu0803 PF02896 PEP-utilising enzyme, TIM barrel domain Atu0803 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain Atu0803 PF00391 PEP-utilising enzyme, mobile domain Atu0811 PF06039 Malate:quinone oxidoreductase (Mqo) Atu0816 PF00009 Elongation factor Tu GTP binding domain Atu0817 PF01507 Phosphoadenosine phosphosulfate reductase family Atu0818 PF01507 Phosphoadenosine phosphosulfate reductase family Atu0819 PF02082 Transcriptional regulator Atu0821 PF00528 Binding-protein-dependent transport system inner membrane component Atu0822 PF00528 Binding-protein-dependent transport system inner membrane component Atu0823 PF00005 ABC transporter Atu0823 PF12857 TOBE-like domain Atu0825 PF16197 Ketoacyl-synthetase C-terminal extension Atu0825 PF00698 Acyl transferase domain Atu0825 PF08240 Alcohol dehydrogenase GroES-like domain Atu0825 PF00107 Zinc-binding dehydrogenase Atu0825 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu0825 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu0825 PF08659 KR domain Atu0825 PF00550 Phosphopantetheine attachment site Atu0825 PF14765 Polyketide synthase dehydratase Atu0826 PF01590 GAF domain Atu0826 PF00563 EAL domain Atu0826 PF00990 Diguanylate cyclase, GGDEF domain Atu0826 PF00989 PAS fold Atu0828 PF13977 BetI-type transcriptional repressor, C-terminal Atu0828 PF00440 Bacterial regulatory proteins, tetR family Atu0829 PF00171 Aldehyde dehydrogenase family Atu0830 PF05199 GMC oxidoreductase Atu0830 PF00732 GMC oxidoreductase Atu0832 PF00654 Voltage gated chloride channel Atu0838 PF07690 Major Facilitator Superfamily Atu0840 PF04675 DNA ligase N terminus Atu0840 PF01068 ATP dependent DNA ligase domain Atu0840 PF04679 ATP dependent DNA ligase C terminal region Atu0842 PF04488 Glycosyltransferase sugar-binding region containing DXD motif Atu0843 PF00403 Heavy-metal-associated domain Atu0844 PF17969 L,D-transpeptidase C-terminal domain Atu0844 PF03734 L,D-transpeptidase catalytic domain Atu0845 PF17969 L,D-transpeptidase C-terminal domain Atu0845 PF03734 L,D-transpeptidase catalytic domain Atu0846 PF01047 MarR family Atu0847 PF02566 OsmC-like protein Atu0850 PF00005 ABC transporter Atu0850 PF16326 ABC transporter C-terminal domain Atu0850 PF12848 ABC transporter Atu0852 PF01047 MarR family Atu0856 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0856 PF03466 LysR substrate binding domain Atu0857 PF00106 short chain dehydrogenase Atu0860 PF05872 Bacterial protein of unknown function (DUF853) Atu0863 PF01638 HxlR-like helix-turn-helix Atu0864 PF00106 short chain dehydrogenase Atu0865 PF12833 Helix-turn-helix domain Atu0867 PF00248 Aldo/keto reductase family Atu0868 PF08279 HTH domain Atu0868 PF13280 WYL domain Atu0871 PF01063 Amino-transferase class IV Atu0872 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu0872 PF00672 HAMP domain Atu0873 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu0873 PF03466 LysR substrate binding domain Atu0876 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Atu0876 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Atu0878 PF13280 WYL domain Atu0878 PF08279 HTH domain Atu0879 PF01810 LysE type translocator Atu0881 PF01322 Cytochrome C' Atu0882 PF00034 Cytochrome c Atu0888 PF00376 MerR family regulatory protein Atu0888 PF09278 MerR, DNA binding Atu0890 PF02583 Metal-sensitive transcriptional repressor Atu0891 PF01545 Cation efflux family Atu0893 PF00005 ABC transporter Atu0893 PF00571 CBS domain Atu0894 PF00528 Binding-protein-dependent transport system inner membrane component Atu0897 PF02897 Prolyl oligopeptidase, N-terminal beta-propeller domain Atu0897 PF00326 Prolyl oligopeptidase family Atu0899 PF00701 Dihydrodipicolinate synthetase family Atu0901 PF12833 Helix-turn-helix domain Atu0901 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Atu0901 PF02805 Metal binding domain of Ada Atu0901 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Atu0903 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu0906 PF03006 Haemolysin-III related Atu0908 PF01641 SelR domain Atu0910 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Atu0911 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Atu0914 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) Atu0915 PF03334 Na+/H+ antiporter subunit Atu0916 PF05443 ROS/MUCR transcriptional regulator protein Atu0919 PF02657 Fe-S metabolism associated domain Atu0920 PF17264 Family of unknown function (DUF5330) Atu0921 PF00512 His Kinase A (phospho-acceptor) domain Atu0921 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0929 PF00144 Beta-lactamase Atu0931 PF00905 Penicillin binding protein transpeptidase domain Atu0931 PF00912 Transglycosylase Atu0932 PF03692 Putative zinc- or iron-chelating domain Atu0933 PF00905 Penicillin binding protein transpeptidase domain Atu0934 PF15738 Bacterial toxin of type II toxin-antitoxin system, YafQ Atu0935 PF04221 RelB antitoxin Atu0937 PF00403 Heavy-metal-associated domain Atu0938 PF00376 MerR family regulatory protein Atu0938 PF09278 MerR, DNA binding Atu0940 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system Atu0942 PF07690 Major Facilitator Superfamily Atu0944 PF08244 Glycosyl hydrolases family 32 C terminal Atu0944 PF00251 Glycosyl hydrolases family 32 N-terminal domain Atu0945 PF02696 Uncharacterized ACR, YdiU/UPF0061 family Atu0947 PF13404 AsnC-type helix-turn-helix domain Atu0947 PF01037 Lrp/AsnC ligand binding domain Atu0954 PF04860 Phage portal protein Atu0970 PF00072 Response regulator receiver domain Atu0970 PF00486 Transcriptional regulatory protein, C terminal Atu0971 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0971 PF00512 His Kinase A (phospho-acceptor) domain Atu0974 PF03100 CcmE Atu0975 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal Atu0975 PF01578 Cytochrome C assembly protein Atu0976 PF03918 Cytochrome C biogenesis protein Atu0977 PF13180 PDZ domain Atu0978 PF00486 Transcriptional regulatory protein, C terminal Atu0978 PF00072 Response regulator receiver domain Atu0979 PF00512 His Kinase A (phospho-acceptor) domain Atu0979 PF00672 HAMP domain Atu0979 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0981 PF08335 GlnD PII-uridylyltransferase Atu0981 PF03710 Glutamate-ammonia ligase adenylyltransferase Atu0982 PF00512 His Kinase A (phospho-acceptor) domain Atu0982 PF00989 PAS fold Atu0982 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu0984 PF01433 Peptidase family M1 domain Atu0984 PF11940 Domain of unknown function (DUF3458) Ig-like fold Atu0984 PF17432 Domain of unknown function (DUF3458_C) ARM repeats Atu0985 PF00892 EamA-like transporter family Atu0988 PF00012 Hsp70 protein Atu0989 PF00563 EAL domain Atu0989 PF00990 Diguanylate cyclase, GGDEF domain Atu0989 PF03707 Bacterial signalling protein N terminal repeat Atu0993 PF16925 Tetracyclin repressor-like, C-terminal domain Atu0993 PF00440 Bacterial regulatory proteins, tetR family Atu0996 PF00107 Zinc-binding dehydrogenase Atu0996 PF08240 Alcohol dehydrogenase GroES-like domain Atu0997 PF01638 HxlR-like helix-turn-helix Atu0998 PF02673 Bacitracin resistance protein BacA Atu0999 PF03448 MgtE intracellular N domain Atu0999 PF01769 Divalent cation transporter Atu0999 PF00571 CBS domain Atu1000 PF07690 Major Facilitator Superfamily Atu1001 PF00781 Diacylglycerol kinase catalytic domain Atu1002 PF00202 Aminotransferase class-III Atu1005 PF09957 Bacterial antitoxin of type II TA system, VapB Atu1006 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus Atu1006 PF01048 Phosphorylase superfamily Atu1011 PF00155 Aminotransferase class I and II Atu1013 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1013 PF14759 Reductase C-terminal Atu1014 PF03328 HpcH/HpaI aldolase/citrate lyase family Atu1020 PF02530 Porin subfamily Atu1021 PF02530 Porin subfamily Atu1022 PF01464 Transglycosylase SLT domain Atu1022 PF14718 Soluble lytic murein transglycosylase L domain Atu1024 PF00701 Dihydrodipicolinate synthetase family Atu1025 PF01668 SmpB protein Atu1027 PF00672 HAMP domain Atu1027 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu1029 PF01192 RNA polymerase Rpb6 Atu1030 PF02824 TGS domain Atu1030 PF04607 Region found in RelA / SpoT proteins Atu1030 PF13291 ACT domain Atu1033 PF01648 4'-phosphopantetheinyl transferase superfamily Atu1034 PF10502 Signal peptidase, peptidase S26 Atu1035 PF14622 Ribonuclease-III-like Atu1035 PF00035 Double-stranded RNA binding motif Atu1036 PF07650 KH domain Atu1036 PF01926 50S ribosome-binding GTPase Atu1037 PF00027 Cyclic nucleotide-binding domain Atu1037 PF13545 Crp-like helix-turn-helix domain Atu1038 PF00072 Response regulator receiver domain Atu1039 PF02565 Recombination protein O C terminal Atu1039 PF11967 Recombination protein O N terminal Atu1040 PF07690 Major Facilitator Superfamily Atu1041 PF08241 Methyltransferase domain Atu1043 PF01966 HD domain Atu1045 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu1047 PF00005 ABC transporter Atu1048 PF00528 Binding-protein-dependent transport system inner membrane component Atu1049 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment Atu1050 PF00924 Mechanosensitive ion channel Atu1050 PF05552 Conserved TM helix Atu1052 PF01966 HD domain Atu1053 PF01571 Aminomethyltransferase folate-binding domain Atu1057 PF00293 NUDIX domain Atu1058 PF02694 Uncharacterised BCR, YnfA/UPF0060 family Atu1060 PF00072 Response regulator receiver domain Atu1060 PF00990 Diguanylate cyclase, GGDEF domain Atu1062 PF01066 CDP-alcohol phosphatidyltransferase Atu1063 PF02666 Phosphatidylserine decarboxylase Atu1064 PF00005 ABC transporter Atu1064 PF00664 ABC transporter transmembrane region Atu1066 PF03641 Possible lysine decarboxylase Atu1067 PF00905 Penicillin binding protein transpeptidase domain Atu1067 PF03717 Penicillin-binding Protein dimerisation domain Atu1068 PF00892 EamA-like transporter family Atu1069 PF00561 alpha/beta hydrolase fold Atu1072 PF04480 Protein of unknown function (DUF559) Atu1073 PF01406 tRNA synthetases class I (C) catalytic domain Atu1073 PF09190 DALR domain Atu1074 PF00106 short chain dehydrogenase Atu1075 PF13537 Glutamine amidotransferase domain Atu1075 PF00156 Phosphoribosyl transferase domain Atu1076 PF02674 Colicin V production protein Atu1077 PF06745 KaiC Atu1077 PF18073 Rubredoxin metal binding domain Atu1080 PF01168 Alanine racemase, N-terminal domain Atu1080 PF00842 Alanine racemase, C-terminal domain Atu1081 PF12852 Cupin Atu1081 PF12833 Helix-turn-helix domain Atu1082 PF03591 AzlC protein Atu1084 PF00772 DnaB-like helicase N terminal domain Atu1084 PF03796 DnaB-like helicase C terminal domain Atu1085 PF01047 MarR family Atu1087 PF13533 Biotin-lipoyl like Atu1088 PF03948 Ribosomal protein L9, C-terminal domain Atu1088 PF01281 Ribosomal protein L9, N-terminal domain Atu1090 PF01084 Ribosomal protein S18 Atu1091 PF01250 Ribosomal protein S6 Atu1093 PF00248 Aldo/keto reductase family Atu1094 PF00698 Acyl transferase domain Atu1096 PF00550 Phosphopantetheine attachment site Atu1097 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu1097 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu1099 PF02618 YceG-like family Atu1100 PF03755 YicC-like family, N-terminal region Atu1100 PF08340 Domain of unknown function (DUF1732) Atu1101 PF00625 Guanylate kinase Atu1102 PF01738 Dienelactone hydrolase family Atu1103 PF00398 Ribosomal RNA adenine dimethylase Atu1104 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Atu1106 PF04453 LPS transport system D Atu1106 PF03968 OstA-like protein Atu1110 PF02789 Cytosol aminopeptidase family, N-terminal domain Atu1110 PF00883 Cytosol aminopeptidase family, catalytic domain Atu1112 PF00563 EAL domain Atu1112 PF03707 Bacterial signalling protein N terminal repeat Atu1112 PF00990 Diguanylate cyclase, GGDEF domain Atu1113 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu1114 PF00990 Diguanylate cyclase, GGDEF domain Atu1114 PF03707 Bacterial signalling protein N terminal repeat Atu1114 PF00563 EAL domain Atu1115 PF00989 PAS fold Atu1115 PF00512 His Kinase A (phospho-acceptor) domain Atu1115 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1116 PF00072 Response regulator receiver domain Atu1116 PF00196 Bacterial regulatory proteins, luxR family Atu1118 PF00005 ABC transporter Atu1118 PF12848 ABC transporter Atu1119 PF17158 Membrane-associated sensor, integral membrane domain Atu1119 PF00990 Diguanylate cyclase, GGDEF domain Atu1121 PF13417 Glutathione S-transferase, N-terminal domain Atu1122 PF00334 Nucleoside diphosphate kinase Atu1126 PF02391 MoaE protein Atu1127 PF02597 ThiS family Atu1128 PF01066 CDP-alcohol phosphatidyltransferase Atu1129 PF01541 GIY-YIG catalytic domain Atu1129 PF02151 UvrB/uvrC motif Atu1129 PF08459 UvrC Helix-hairpin-helix N-terminal Atu1131 PF13505 Outer membrane protein beta-barrel domain Atu1132 PF00043 Glutathione S-transferase, C-terminal domain Atu1132 PF13417 Glutathione S-transferase, N-terminal domain Atu1133 PF00445 Ribonuclease T2 family Atu1135 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ Atu1136 PF00384 Molybdopterin oxidoreductase Atu1136 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Atu1136 PF01568 Molydopterin dinucleotide binding domain Atu1137 PF00293 NUDIX domain Atu1140 PF00551 Formyl transferase Atu1141 PF02769 AIR synthase related protein, C-terminal domain Atu1141 PF00586 AIR synthase related protein, N-terminal domain Atu1142 PF01594 AI-2E family transporter Atu1144 PF02503 Polyphosphate kinase middle domain Atu1144 PF13090 Polyphosphate kinase C-terminal domain 2 Atu1144 PF17941 Polyphosphate kinase C-terminal domain 1 Atu1144 PF13089 Polyphosphate kinase N-terminal domain Atu1145 PF02541 Ppx/GppA phosphatase family Atu1146 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1149 PF00211 Adenylate and Guanylate cyclase catalytic domain Atu1151 PF01612 3'-5' exonuclease Atu1151 PF00570 HRDC domain Atu1152 PF07690 Major Facilitator Superfamily Atu1153 PF01336 OB-fold nucleic acid binding domain Atu1153 PF00152 tRNA synthetases class II (D, K and N) Atu1153 PF02938 GAD domain Atu1155 PF06123 Inner membrane protein CreD Atu1156 PF00916 Sulfate permease family Atu1156 PF01740 STAS domain Atu1158 PF00521 DNA gyrase/topoisomerase IV, subunit A Atu1158 PF03989 DNA gyrase C-terminal domain, beta-propeller Atu1159 PF04376 Arginine-tRNA-protein transferase, N terminus Atu1159 PF04377 Arginine-tRNA-protein transferase, C terminus Atu1161 PF00490 Delta-aminolevulinic acid dehydratase Atu1165 PF00464 Serine hydroxymethyltransferase Atu1166 PF03477 ATP cone domain Atu1169 PF00677 Lumazine binding domain Atu1170 PF01810 LysE type translocator Atu1171 PF00885 6,7-dimethyl-8-ribityllumazine synthase Atu1172 PF01029 NusB family Atu1173 PF07690 Major Facilitator Superfamily Atu1174 PF03030 Inorganic H+ pyrophosphatase Atu1178 PF02504 Fatty acid synthesis protein Atu1179 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Atu1179 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Atu1180 PF00216 Bacterial DNA-binding protein Atu1181 PF13411 MerR HTH family regulatory protein Atu1195 PF00403 Heavy-metal-associated domain Atu1196 PF00970 Oxidoreductase FAD-binding domain Atu1196 PF00175 Oxidoreductase NAD-binding domain Atu1196 PF00111 2Fe-2S iron-sulfur cluster binding domain Atu1197 PF00376 MerR family regulatory protein Atu1197 PF09278 MerR, DNA binding Atu1198 PF00528 Binding-protein-dependent transport system inner membrane component Atu1199 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu1199 PF00528 Binding-protein-dependent transport system inner membrane component Atu1200 PF00005 ABC transporter Atu1200 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu1201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu1201 PF00005 ABC transporter Atu1202 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu1204 PF02386 Cation transport protein Atu1205 PF00585 C-terminal regulatory domain of Threonine dehydratase Atu1205 PF00291 Pyridoxal-phosphate dependent enzyme Atu1207 PF00990 Diguanylate cyclase, GGDEF domain Atu1207 PF00072 Response regulator receiver domain Atu1208 PF02525 Flavodoxin-like fold Atu1209 PF03466 LysR substrate binding domain Atu1209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu1210 PF02872 5'-nucleotidase, C-terminal domain Atu1210 PF00149 Calcineurin-like phosphoesterase Atu1215 PF00581 Rhodanese-like domain Atu1216 PF02272 DHHA1 domain Atu1216 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Atu1216 PF01411 tRNA synthetases class II (A) Atu1217 PF00291 Pyridoxal-phosphate dependent enzyme Atu1217 PF00571 CBS domain Atu1218 PF03441 FAD binding domain of DNA photolyase Atu1218 PF00875 DNA photolyase Atu1220 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Atu1220 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Atu1226 PF06055 Exopolysaccharide synthesis, ExoD Atu1236 PF02397 Bacterial sugar transferase Atu1237 PF13439 Glycosyltransferase Family 4 Atu1237 PF00534 Glycosyl transferases group 1 Atu1242 PF02628 Cytochrome oxidase assembly protein Atu1243 PF04655 Aminoglycoside/hydroxyurea antibiotic resistance kinase Atu1244 PF01118 Semialdehyde dehydrogenase, NAD binding domain Atu1245 PF00491 Arginase family Atu1246 PF00380 Ribosomal protein S9/S16 Atu1247 PF00572 Ribosomal protein L13 Atu1250 PF13380 CoA binding domain Atu1251 PF01053 Cys/Met metabolism PLP-dependent enzyme Atu1256 PF00067 Cytochrome P450 Atu1257 PF00990 Diguanylate cyclase, GGDEF domain Atu1258 PF00574 Clp protease Atu1259 PF07724 AAA domain (Cdc48 subfamily) Atu1259 PF06689 ClpX C4-type zinc finger Atu1259 PF10431 C-terminal, D2-small domain, of ClpB protein Atu1261 PF00004 ATPase family associated with various cellular activities (AAA) Atu1261 PF05362 Lon protease (S16) C-terminal proteolytic domain Atu1261 PF02190 ATP-dependent protease La (LON) substrate-binding domain Atu1262 PF00216 Bacterial DNA-binding protein Atu1268 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 Atu1269 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit Atu1270 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit Atu1272 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit Atu1275 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Atu1275 PF10531 SLBB domain Atu1275 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Atu1276 PF00384 Molybdopterin oxidoreductase Atu1276 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Atu1276 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal Atu1277 PF00146 NADH dehydrogenase Atu1278 PF12838 4Fe-4S dicluster domain Atu1279 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 Atu1280 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L Atu1281 PF00361 Proton-conducting membrane transporter Atu1281 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Atu1282 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus Atu1282 PF00361 Proton-conducting membrane transporter Atu1283 PF00361 Proton-conducting membrane transporter Atu1284 PF08279 HTH domain Atu1284 PF03099 Biotin/lipoate A/B protein ligase family Atu1284 PF02237 Biotin protein ligase C terminal domain Atu1285 PF17770 Ribonuclease J C-terminal domain Atu1285 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain Atu1285 PF12706 Beta-lactamase superfamily domain Atu1288 PF03129 Anticodon binding domain Atu1288 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Atu1289 PF12704 MacB-like periplasmic core domain Atu1289 PF02687 FtsX-like permease family Atu1290 PF00005 ABC transporter Atu1292 PF07733 Bacterial DNA polymerase III alpha NTPase domain Atu1292 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Atu1292 PF14579 Helix-hairpin-helix motif Atu1292 PF02811 PHP domain Atu1294 PF11799 impB/mucB/samB family C-terminal domain Atu1294 PF00817 impB/mucB/samB family Atu1296 PF00072 Response regulator receiver domain Atu1297 PF00072 Response regulator receiver domain Atu1297 PF00990 Diguanylate cyclase, GGDEF domain Atu1299 PF00471 Ribosomal protein L33 Atu1300 PF07690 Major Facilitator Superfamily Atu1303 PF08206 Ribonuclease B OB domain Atu1303 PF00575 S1 RNA binding domain Atu1303 PF00773 RNB domain Atu1303 PF08461 Ribonuclease R winged-helix domain Atu1303 PF17876 Cold shock domain Atu1304 PF01131 DNA topoisomerase Atu1304 PF13368 Topoisomerase C-terminal repeat Atu1304 PF01396 Topoisomerase DNA binding C4 zinc finger Atu1304 PF01751 Toprim domain Atu1305 PF02481 DNA recombination-mediator protein A Atu1305 PF17782 DprA winged helix domain Atu1306 PF02660 Glycerol-3-phosphate acyltransferase Atu1307 PF01979 Amidohydrolase family Atu1308 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain Atu1308 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain Atu1310 PF02770 Acyl-CoA dehydrogenase, middle domain Atu1310 PF18158 Adaptive response protein AidB N-terminal domain Atu1310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu1311 PF00583 Acetyltransferase (GNAT) family Atu1316 PF03652 Holliday junction resolvase Atu1318 PF02686 Glu-tRNAGln amidotransferase C subunit Atu1319 PF01425 Amidase Atu1320 PF00583 Acetyltransferase (GNAT) family Atu1320 PF13673 Acetyltransferase (GNAT) domain Atu1321 PF09857 Putative toxin of bacterial toxin-antitoxin pair Atu1324 PF02934 GatB/GatE catalytic domain Atu1324 PF02637 GatB domain Atu1326 PF00583 Acetyltransferase (GNAT) family Atu1329 PF03588 Leucyl/phenylalanyl-tRNA protein transferase Atu1330 PF00289 Biotin carboxylase, N-terminal domain Atu1330 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu1330 PF02785 Biotin carboxylase C-terminal domain Atu1331 PF00364 Biotin-requiring enzyme Atu1332 PF01220 Dehydroquinase class II Atu1333 PF06965 Na+/H+ antiporter 1 Atu1333 PF13462 Thioredoxin Atu1334 PF00155 Aminotransferase class I and II Atu1339 PF10150 Ribonuclease E/G family Atu1339 PF00575 S1 RNA binding domain Atu1339 PF12111 Polyribonucleotide phosphorylase C terminal Atu1340 PF01520 N-acetylmuramoyl-L-alanine amidase Atu1341 PF17092 Penicillin-binding protein OB-like domain Atu1341 PF00912 Transglycosylase Atu1341 PF00905 Penicillin binding protein transpeptidase domain Atu1342 PF03462 PCRF domain Atu1342 PF00472 RF-1 domain Atu1345 PF01513 ATP-NAD kinase Atu1346 PF02567 Phenazine biosynthesis-like protein Atu1347 PF00679 Elongation factor G C-terminus Atu1347 PF03764 Elongation factor G, domain IV Atu1347 PF00009 Elongation factor Tu GTP binding domain Atu1350 PF00111 2Fe-2S iron-sulfur cluster binding domain Atu1352 PF00809 Pterin binding enzyme Atu1353 PF02152 Dihydroneopterin aldolase Atu1354 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) Atu1356 PF05128 Domain of unknown function (DUF697) Atu1357 PF04317 YcjX-like family, DUF463 Atu1359 PF01258 Prokaryotic dksA/traR C4-type zinc finger Atu1362 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1362 PF00072 Response regulator receiver domain Atu1362 PF08448 PAS fold Atu1362 PF13188 PAS domain Atu1362 PF00512 His Kinase A (phospho-acceptor) domain Atu1363 PF02617 ATP-dependent Clp protease adaptor protein ClpS Atu1364 PF07724 AAA domain (Cdc48 subfamily) Atu1364 PF02861 Clp amino terminal domain, pathogenicity island component Atu1364 PF00004 ATPase family associated with various cellular activities (AAA) Atu1364 PF10431 C-terminal, D2-small domain, of ClpB protein Atu1364 PF17871 AAA lid domain Atu1367 PF03466 LysR substrate binding domain Atu1367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu1369 PF01230 HIT domain Atu1374 PF00318 Ribosomal protein S2 Atu1375 PF00889 Elongation factor TS Atu1376 PF00696 Amino acid kinase family Atu1377 PF01765 Ribosome recycling factor Atu1378 PF01255 Putative undecaprenyl diphosphate synthase Atu1380 PF02163 Peptidase family M50 Atu1380 PF17820 PDZ domain Atu1381 PF07244 Surface antigen variable number repeat Atu1381 PF01103 Surface antigen Atu1382 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1382 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD Atu1383 PF07977 FabA-like domain Atu1384 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1384 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 Atu1385 PF06230 LpxI C-terminal domain Atu1385 PF17930 LpxI N-terminal domain Atu1386 PF02684 Lipid-A-disaccharide synthetase Atu1387 PF07729 FCD domain Atu1387 PF00392 Bacterial regulatory proteins, gntR family Atu1388 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu1389 PF00528 Binding-protein-dependent transport system inner membrane component Atu1390 PF00528 Binding-protein-dependent transport system inner membrane component Atu1391 PF00005 ABC transporter Atu1392 PF00285 Citrate synthase, C-terminal domain Atu1395 PF01726 LexA DNA binding domain Atu1395 PF00717 Peptidase S24-like Atu1396 PF00005 ABC transporter Atu1397 PF00528 Binding-protein-dependent transport system inner membrane component Atu1398 PF00528 Binding-protein-dependent transport system inner membrane component Atu1399 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu1400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu1400 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu1401 PF08402 TOBE domain Atu1401 PF00005 ABC transporter Atu1402 PF00528 Binding-protein-dependent transport system inner membrane component Atu1403 PF00528 Binding-protein-dependent transport system inner membrane component Atu1404 PF01547 Bacterial extracellular solute-binding protein Atu1406 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu1406 PF13378 Enolase C-terminal domain-like Atu1408 PF00107 Zinc-binding dehydrogenase Atu1408 PF08240 Alcohol dehydrogenase GroES-like domain Atu1409 PF04115 Ureidoglycolate lyase Atu1410 PF00005 ABC transporter Atu1411 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu1411 PF00005 ABC transporter Atu1413 PF13458 Periplasmic binding protein Atu1414 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu1414 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu1414 PF02770 Acyl-CoA dehydrogenase, middle domain Atu1414 PF12806 Acetyl-CoA dehydrogenase C-terminal like Atu1415 PF00106 short chain dehydrogenase Atu1416 PF07993 Male sterility protein Atu1416 PF00501 AMP-binding enzyme Atu1416 PF00550 Phosphopantetheine attachment site Atu1417 PF00378 Enoyl-CoA hydratase/isomerase Atu1419 PF00392 Bacterial regulatory proteins, gntR family Atu1419 PF07729 FCD domain Atu1420 PF01571 Aminomethyltransferase folate-binding domain Atu1424 PF00793 DAHP synthetase I family Atu1426 PF03952 Enolase, N-terminal domain Atu1426 PF00113 Enolase, C-terminal TIM barrel domain Atu1429 PF00676 Dehydrogenase E1 component Atu1430 PF02779 Transketolase, pyrimidine binding domain Atu1430 PF02780 Transketolase, C-terminal domain Atu1430 PF00364 Biotin-requiring enzyme Atu1432 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Atu1432 PF00364 Biotin-requiring enzyme Atu1432 PF02817 e3 binding domain Atu1434 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1434 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Atu1436 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family Atu1436 PF04055 Radical SAM superfamily Atu1437 PF00892 EamA-like transporter family Atu1441 PF03364 Polyketide cyclase / dehydrase and lipid transport Atu1442 PF02464 Competence-damaged protein Atu1443 PF02542 YgbB family Atu1443 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase Atu1444 PF01207 Dihydrouridine synthase (Dus) Atu1445 PF00989 PAS fold Atu1445 PF00512 His Kinase A (phospho-acceptor) domain Atu1445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1446 PF02954 Bacterial regulatory protein, Fis family Atu1446 PF00072 Response regulator receiver domain Atu1446 PF00158 Sigma-54 interaction domain Atu1447 PF00672 HAMP domain Atu1447 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1447 PF00989 PAS fold Atu1447 PF00512 His Kinase A (phospho-acceptor) domain Atu1448 PF02954 Bacterial regulatory protein, Fis family Atu1448 PF00072 Response regulator receiver domain Atu1448 PF00158 Sigma-54 interaction domain Atu1449 PF02080 TrkA-C domain Atu1449 PF02254 TrkA-N domain Atu1450 PF17209 Hfq protein Atu1451 PF16360 GTP-binding GTPase Middle Region Atu1451 PF13167 GTP-binding GTPase N-terminal Atu1451 PF01926 50S ribosome-binding GTPase Atu1452 PF03819 MazG nucleotide pyrophosphohydrolase domain Atu1454 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu1454 PF10414 Sirohaem synthase dimerisation region Atu1454 PF14824 Sirohaem biosynthesis protein central Atu1457 PF01795 MraW methylase family Atu1458 PF00175 Oxidoreductase NAD-binding domain Atu1458 PF00970 Oxidoreductase FAD-binding domain Atu1459 PF07690 Major Facilitator Superfamily Atu1462 PF02347 Glycine cleavage system P-protein Atu1463 PF01597 Glycine cleavage H-protein Atu1464 PF08669 Glycine cleavage T-protein C-terminal barrel domain Atu1464 PF01571 Aminomethyltransferase folate-binding domain Atu1470 PF02537 CrcB-like protein, Camphor Resistance (CrcB) Atu1471 PF01479 S4 domain Atu1471 PF00849 RNA pseudouridylate synthase Atu1472 PF13419 Haloacid dehalogenase-like hydrolase Atu1475 PF01042 Endoribonuclease L-PSP Atu1476 PF00756 Putative esterase Atu1478 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 Atu1480 PF00578 AhpC/TSA family Atu1480 PF10417 C-terminal domain of 1-Cys peroxiredoxin Atu1485 PF08281 Sigma-70, region 4 Atu1485 PF04542 Sigma-70 region 2 Atu1488 PF00665 Integrase core domain Atu1488 PF13936 Helix-turn-helix domain Atu1489 PF03358 NADPH-dependent FMN reductase Atu1490 PF03960 ArsC family Atu1491 PF01758 Sodium Bile acid symporter family Atu1493 PF00654 Voltage gated chloride channel Atu1494 PF03099 Biotin/lipoate A/B protein ligase family Atu1494 PF12706 Beta-lactamase superfamily domain Atu1495 PF01026 TatD related DNase Atu1496 PF08264 Anticodon-binding domain of tRNA Atu1496 PF09334 tRNA synthetases class I (M) Atu1497 PF09115 DNA polymerase III, delta subunit, C terminal Atu1498 PF02223 Thymidylate kinase Atu1499 PF00768 D-alanyl-D-alanine carboxypeptidase Atu1499 PF07943 Penicillin-binding protein 5, C-terminal domain Atu1500 PF05036 Sporulation related domain Atu1500 PF03330 Lytic transglycolase Atu1507 PF00521 DNA gyrase/topoisomerase IV, subunit A Atu1507 PF03989 DNA gyrase C-terminal domain, beta-propeller Atu1508 PF01914 MarC family integral membrane protein Atu1511 PF03693 Bacterial antitoxin of ParD toxin-antitoxin type II system and RHH Atu1512 PF00436 Single-strand binding protein family Atu1513 PF17755 UvrA DNA-binding domain Atu1513 PF17760 UvrA interaction domain Atu1515 PF01207 Dihydrouridine synthase (Dus) Atu1516 PF01557 Fumarylacetoacetate (FAA) hydrolase family Atu1517 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1519 PF00950 ABC 3 transport family Atu1520 PF00005 ABC transporter Atu1521 PF01297 Zinc-uptake complex component A periplasmic Atu1522 PF00356 Bacterial regulatory proteins, lacI family Atu1524 PF00248 Aldo/keto reductase family Atu1526 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Atu1526 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu1527 PF03597 Cytochrome oxidase maturation protein cbb3-type Atu1529 PF05751 FixH Atu1530 PF12801 4Fe-4S binding domain Atu1530 PF13746 4Fe-4S dicluster domain Atu1530 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase Atu1534 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP Atu1534 PF13442 Cytochrome C oxidase, cbb3-type, subunit III Atu1537 PF00115 Cytochrome C and Quinol oxidase polypeptide I Atu1539 PF01740 STAS domain Atu1539 PF00916 Sulfate permease family Atu1541 PF00924 Mechanosensitive ion channel Atu1542 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase Atu1546 PF09278 MerR, DNA binding Atu1546 PF00376 MerR family regulatory protein Atu1547 PF03448 MgtE intracellular N domain Atu1547 PF00571 CBS domain Atu1547 PF01769 Divalent cation transporter Atu1548 PF00384 Molybdopterin oxidoreductase Atu1550 PF01327 Polypeptide deformylase Atu1556 PF03099 Biotin/lipoate A/B protein ligase family Atu1557 PF00107 Zinc-binding dehydrogenase Atu1557 PF08240 Alcohol dehydrogenase GroES-like domain Atu1562 PF02355 Protein export membrane protein Atu1562 PF07549 SecD/SecF GG Motif Atu1563 PF02699 Preprotein translocase subunit Atu1567 PF08240 Alcohol dehydrogenase GroES-like domain Atu1567 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Atu1568 PF00440 Bacterial regulatory proteins, tetR family Atu1569 PF00067 Cytochrome P450 Atu1571 PF06426 Serine acetyltransferase, N-terminal Atu1571 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1572 PF00561 alpha/beta hydrolase fold Atu1574 PF01494 FAD binding domain Atu1575 PF01053 Cys/Met metabolism PLP-dependent enzyme Atu1577 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu1578 PF00528 Binding-protein-dependent transport system inner membrane component Atu1579 PF00528 Binding-protein-dependent transport system inner membrane component Atu1580 PF00005 ABC transporter Atu1586 PF17768 RecJ OB domain Atu1586 PF02272 DHHA1 domain Atu1586 PF01368 DHH family Atu1588 PF01842 ACT domain Atu1588 PF03447 Homoserine dehydrogenase, NAD binding domain Atu1588 PF00742 Homoserine dehydrogenase Atu1589 PF00155 Aminotransferase class I and II Atu1590 PF01156 Inosine-uridine preferring nucleoside hydrolase Atu1591 PF01925 Sulfite exporter TauE/SafE Atu1595 PF08240 Alcohol dehydrogenase GroES-like domain Atu1595 PF00107 Zinc-binding dehydrogenase Atu1596 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu1596 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu1599 PF07977 FabA-like domain Atu1600 PF00550 Phosphopantetheine attachment site Atu1601 PF04055 Radical SAM superfamily Atu1602 PF00027 Cyclic nucleotide-binding domain Atu1602 PF13545 Crp-like helix-turn-helix domain Atu1604 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus Atu1605 PF17746 SfsA N-terminal OB domain Atu1605 PF03749 Sugar fermentation stimulation protein RE domain Atu1606 PF00557 Metallopeptidase family M24 Atu1607 PF04002 RadC-like JAB domain Atu1610 PF01474 Class-II DAHP synthetase family Atu1611 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Atu1611 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1613 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Atu1614 PF13419 Haloacid dehalogenase-like hydrolase Atu1616 PF00206 Lyase Atu1616 PF10415 Fumarase C C-terminus Atu1618 PF00117 Glutamine amidotransferase class-I Atu1618 PF06418 CTP synthase N-terminus Atu1619 PF03840 Preprotein translocase SecG subunit Atu1620 PF00121 Triosephosphate isomerase Atu1622 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1622 PF00986 DNA gyrase B subunit, carboxyl terminus Atu1622 PF00204 DNA gyrase B Atu1622 PF01751 Toprim domain Atu1623 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1624 PF00440 Bacterial regulatory proteins, tetR family Atu1624 PF16859 Tetracyclin repressor-like, C-terminal domain Atu1625 PF01209 ubiE/COQ5 methyltransferase family Atu1627 PF00574 Clp protease Atu1629 PF01022 Bacterial regulatory protein, arsR family Atu1630 PF13091 PLD-like domain Atu1631 PF00072 Response regulator receiver domain Atu1632 PF01266 FAD dependent oxidoreductase Atu1632 PF16350 FAD dependent oxidoreductase central domain Atu1632 PF01571 Aminomethyltransferase folate-binding domain Atu1632 PF08669 Glycine cleavage T-protein C-terminal barrel domain Atu1633 PF12794 Mechanosensitive ion channel inner membrane domain 1 Atu1633 PF12795 Mechanosensitive ion channel porin domain Atu1633 PF00924 Mechanosensitive ion channel Atu1646 PF00005 ABC transporter Atu1647 PF02405 Permease MlaE Atu1648 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu1648 PF13378 Enolase C-terminal domain-like Atu1652 PF00390 Malic enzyme, N-terminal domain Atu1652 PF01515 Phosphate acetyl/butaryl transferase Atu1652 PF03949 Malic enzyme, NAD binding domain Atu1654 PF00881 Nitroreductase family Atu1656 PF07676 WD40-like Beta Propeller Repeat Atu1657 PF02540 NAD synthase Atu1657 PF00795 Carbon-nitrogen hydrolase Atu1658 PF00884 Sulfatase Atu1661 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1661 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Atu1664 PF05698 Bacterial trigger factor protein (TF) C-terminus Atu1664 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase Atu1664 PF05697 Bacterial trigger factor protein (TF) Atu1669 PF01134 Glucose inhibited division protein A Atu1670 PF00107 Zinc-binding dehydrogenase Atu1670 PF08240 Alcohol dehydrogenase GroES-like domain Atu1672 PF00975 Thioesterase domain Atu1672 PF00668 Condensation domain Atu1672 PF13193 AMP-binding enzyme C-terminal domain Atu1672 PF00550 Phosphopantetheine attachment site Atu1672 PF00501 AMP-binding enzyme Atu1673 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Atu1673 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Atu1676 PF04715 Anthranilate synthase component I, N terminal region Atu1676 PF00425 chorismate binding enzyme Atu1677 PF01702 Queuine tRNA-ribosyltransferase Atu1678 PF02547 Queuosine biosynthesis protein Atu1679 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Atu1680 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD Atu1681 PF01467 Cytidylyltransferase-like Atu1687 PF00591 Glycosyl transferase family, a/b domain Atu1687 PF02885 Glycosyl transferase family, helical bundle domain Atu1688 PF00218 Indole-3-glycerol phosphate synthase Atu1689 PF01967 MoaC family Atu1690 PF00994 Probable molybdopterin binding domain Atu1690 PF03453 MoeA N-terminal region (domain I and II) Atu1690 PF03454 MoeA C-terminal region (domain IV) Atu1691 PF17158 Membrane-associated sensor, integral membrane domain Atu1691 PF00990 Diguanylate cyclase, GGDEF domain Atu1693 PF02254 TrkA-N domain Atu1693 PF00999 Sodium/hydrogen exchanger family Atu1695 PF04055 Radical SAM superfamily Atu1695 PF06463 Molybdenum Cofactor Synthesis C Atu1696 PF00892 EamA-like transporter family Atu1697 PF07690 Major Facilitator Superfamily Atu1698 PF12804 MobA-like NTP transferase domain Atu1699 PF03205 Molybdopterin guanine dinucleotide synthesis protein B Atu1700 PF01551 Peptidase family M23 Atu1702 PF01975 Survival protein SurE Atu1703 PF02403 Seryl-tRNA synthetase N-terminal domain Atu1703 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Atu1704 PF00902 Sec-independent protein translocase protein (TatC) Atu1705 PF02416 mttA/Hcf106 family Atu1706 PF02416 mttA/Hcf106 family Atu1707 PF04079 Segregation and condensation complex subunit ScpB Atu1708 PF02616 Segregation and condensation protein ScpA Atu1709 PF00933 Glycosyl hydrolase family 3 N terminal domain Atu1711 PF00750 tRNA synthetases class I (R) Atu1711 PF05746 DALR anticodon binding domain Atu1711 PF03485 Arginyl tRNA synthetase N terminal domain Atu1712 PF01966 HD domain Atu1712 PF13286 Phosphohydrolase-associated domain Atu1713 PF01521 Iron-sulphur cluster biosynthesis Atu1715 PF08238 Sel1 repeat Atu1719 PF08264 Anticodon-binding domain of tRNA Atu1719 PF00133 tRNA synthetases class I (I, L, M and V) Atu1719 PF10458 Valyl tRNA synthetase tRNA binding arm Atu1728 PF03358 NADPH-dependent FMN reductase Atu1729 PF02464 Competence-damaged protein Atu1729 PF18146 Damage-inducible protein CinA KH domain Atu1729 PF00994 Probable molybdopterin binding domain Atu1730 PF00582 Universal stress protein family Atu1731 PF00156 Phosphoribosyl transferase domain Atu1733 PF08471 Class II vitamin B12-dependent ribonucleotide reductase Atu1733 PF02867 Ribonucleotide reductase, barrel domain Atu1736 PF01566 Natural resistance-associated macrophage protein Atu1738 PF00664 ABC transporter transmembrane region Atu1738 PF00005 ABC transporter Atu1739 PF01594 AI-2E family transporter Atu1740 PF00583 Acetyltransferase (GNAT) family Atu1743 PF01613 Flavin reductase like domain Atu1746 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Atu1746 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) Atu1746 PF02824 TGS domain Atu1746 PF03129 Anticodon binding domain Atu1747 PF01809 Putative membrane protein insertion efficiency factor Atu1749 PF01227 GTP cyclohydrolase I Atu1750 PF01502 Phosphoribosyl-AMP cyclohydrolase Atu1751 PF01734 Patatin-like phospholipase Atu1752 PF00571 CBS domain Atu1752 PF00478 IMP dehydrogenase / GMP reductase domain Atu1759 PF03313 Serine dehydratase alpha chain Atu1759 PF03315 Serine dehydratase beta chain Atu1765 PF03466 LysR substrate binding domain Atu1765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu1767 PF12833 Helix-turn-helix domain Atu1767 PF01965 DJ-1/PfpI family Atu1768 PF03853 YjeF-related protein N-terminus Atu1768 PF01256 Carbohydrate kinase Atu1769 PF00543 Nitrogen regulatory protein P-II Atu1770 PF00120 Glutamine synthetase, catalytic domain Atu1770 PF03951 Glutamine synthetase, beta-Grasp domain Atu1774 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu1776 PF00892 EamA-like transporter family Atu1778 PF02559 CarD-like/TRCF domain Atu1778 PF17757 UvrB interaction domain Atu1778 PF00271 Helicase conserved C-terminal domain Atu1778 PF00270 DEAD/DEAH box helicase Atu1778 PF03461 TRCF domain Atu1780 PF00271 Helicase conserved C-terminal domain Atu1780 PF00270 DEAD/DEAH box helicase Atu1780 PF17191 RecG wedge domain Atu1782 PF05016 ParE toxin of type II toxin-antitoxin system, parDE Atu1783 PF01402 Ribbon-helix-helix protein, copG family Atu1786 PF01380 SIS domain Atu1787 PF14602 Hexapeptide repeat of succinyl-transferase Atu1787 PF00132 Bacterial transferase hexapeptide (six repeats) Atu1787 PF12804 MobA-like NTP transferase domain Atu1788 PF07729 FCD domain Atu1788 PF00392 Bacterial regulatory proteins, gntR family Atu1789 PF02608 ABC transporter substrate-binding protein PnrA-like Atu1792 PF00005 ABC transporter Atu1794 PF01494 FAD binding domain Atu1795 PF03547 Membrane transport protein Atu1796 PF02683 Cytochrome C biogenesis protein transmembrane region Atu1803 PF00313 'Cold-shock' DNA-binding domain Atu1814 PF00561 alpha/beta hydrolase fold Atu1816 PF12704 MacB-like periplasmic core domain Atu1816 PF02687 FtsX-like permease family Atu1816 PF00005 ABC transporter Atu1817 PF00005 ABC transporter Atu1817 PF02687 FtsX-like permease family Atu1817 PF12704 MacB-like periplasmic core domain Atu1819 PF01521 Iron-sulphur cluster biosynthesis Atu1820 PF01883 Iron-sulfur cluster assembly protein Atu1821 PF00266 Aminotransferase class-V Atu1822 PF01458 Uncharacterized protein family (UPF0051) Atu1823 PF00005 ABC transporter Atu1824 PF01458 Uncharacterized protein family (UPF0051) Atu1825 PF00266 Aminotransferase class-V Atu1826 PF02129 X-Pro dipeptidyl-peptidase (S15 family) Atu1827 PF03702 Anhydro-N-acetylmuramic acid kinase Atu1828 PF00579 tRNA synthetases class I (W and Y) Atu1830 PF00578 AhpC/TSA family Atu1831 PF04305 Protein of unknown function (DUF455) Atu1832 PF01476 LysM domain Atu1832 PF01551 Peptidase family M23 Atu1832 PF08525 Opacity-associated protein A N-terminal motif Atu1833 PF00270 DEAD/DEAH box helicase Atu1833 PF00271 Helicase conserved C-terminal domain Atu1839 PF00834 Ribulose-phosphate 3 epimerase family Atu1841 PF00206 Lyase Atu1841 PF10397 Adenylosuccinate lyase C-terminus Atu1843 PF01259 SAICAR synthetase Atu1844 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase Atu1848 PF00155 Aminotransferase class I and II Atu1848 PF00392 Bacterial regulatory proteins, gntR family Atu1850 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain Atu1850 PF02769 AIR synthase related protein, C-terminal domain Atu1850 PF00586 AIR synthase related protein, N-terminal domain Atu1854 PF00462 Glutaredoxin Atu1855 PF07690 Major Facilitator Superfamily Atu1856 PF00459 Inositol monophosphatase family Atu1857 PF00459 Inositol monophosphatase family Atu1858 PF01171 PP-loop family Atu1859 PF04960 Glutaminase Atu1860 PF00163 Ribosomal protein S4/S9 N-terminal domain Atu1860 PF01479 S4 domain Atu1861 PF03741 Integral membrane protein TerC family Atu1863 PF00892 EamA-like transporter family Atu1864 PF01810 LysE type translocator Atu1867 PF01177 Asp/Glu/Hydantoin racemase Atu1868 PF00588 SpoU rRNA Methylase family Atu1870 PF00180 Isocitrate/isopropylmalate dehydrogenase Atu1873 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain Atu1873 PF02272 DHHA1 domain Atu1873 PF01411 tRNA synthetases class II (A) Atu1874 PF00154 recA bacterial DNA recombination protein Atu1875 PF00294 pfkB family carbohydrate kinase Atu1876 PF04227 Indigoidine synthase A like protein Atu1877 PF01389 OmpA-like transmembrane domain Atu1877 PF00691 OmpA family Atu1879 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu1880 PF00528 Binding-protein-dependent transport system inner membrane component Atu1881 PF00528 Binding-protein-dependent transport system inner membrane component Atu1882 PF06233 Usg-like family Atu1884 PF09084 NMT1/THI5 like Atu1885 PF13404 AsnC-type helix-turn-helix domain Atu1885 PF01037 Lrp/AsnC ligand binding domain Atu1886 PF03167 Uracil DNA glycosylase superfamily Atu1888 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1888 PF00512 His Kinase A (phospho-acceptor) domain Atu1888 PF00989 PAS fold Atu1889 PF01219 Prokaryotic diacylglycerol kinase Atu1890 PF02277 Phosphoribosyltransferase Atu1891 PF02654 Cobalamin-5-phosphate synthase Atu1895 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase Atu1898 PF00005 ABC transporter Atu1899 PF13407 Periplasmic binding protein domain Atu1900 PF02653 Branched-chain amino acid transport system / permease component Atu1901 PF00456 Transketolase, thiamine diphosphate binding domain Atu1902 PF02780 Transketolase, C-terminal domain Atu1902 PF02779 Transketolase, pyrimidine binding domain Atu1903 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu1903 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu1904 PF04198 Putative sugar-binding domain Atu1905 PF00106 short chain dehydrogenase Atu1906 PF01061 ABC-2 type transporter Atu1907 PF00005 ABC transporter Atu1912 PF00672 HAMP domain Atu1912 PF00672 HAMP domain Atu1912 PF17200 Single Cache domain 2 Atu1912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu1912 PF17200 Single Cache domain 2 Atu1912 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu1914 PF00004 ATPase family associated with various cellular activities (AAA) Atu1914 PF16193 AAA C-terminal domain Atu1914 PF12002 MgsA AAA+ ATPase C terminal Atu1915 PF13180 PDZ domain Atu1915 PF00595 PDZ domain Atu1918 PF00920 Dehydratase family Atu1919 PF00174 Oxidoreductase molybdopterin binding domain Atu1920 PF01794 Ferric reductase like transmembrane component Atu1921 PF05675 Protein of unknown function (DUF817) Atu1922 PF01196 Ribosomal protein L17 Atu1923 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain Atu1923 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain Atu1923 PF01000 RNA polymerase Rpb3/RpoA insert domain Atu1924 PF00411 Ribosomal protein S11 Atu1925 PF00416 Ribosomal protein S13/S18 Atu1927 PF00344 SecY translocase Atu1928 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A Atu1929 PF03719 Ribosomal protein S5, C-terminal domain Atu1929 PF00333 Ribosomal protein S5, N-terminal domain Atu1930 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast Atu1931 PF00347 Ribosomal protein L6 Atu1932 PF00410 Ribosomal protein S8 Atu1933 PF00253 Ribosomal protein S14p/S29e Atu1934 PF00281 Ribosomal protein L5 Atu1934 PF00673 ribosomal L5P family C-terminus Atu1935 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 Atu1935 PF00467 KOW motif Atu1936 PF00238 Ribosomal protein L14p/L23e Atu1937 PF00366 Ribosomal protein S17 Atu1938 PF00831 Ribosomal L29 protein Atu1939 PF00252 Ribosomal protein L16p/L10e Atu1940 PF07650 KH domain Atu1940 PF00189 Ribosomal protein S3, C-terminal domain Atu1941 PF00237 Ribosomal protein L22p/L17e Atu1942 PF00203 Ribosomal protein S19 Atu1943 PF03947 Ribosomal Proteins L2, C-terminal domain Atu1943 PF00181 Ribosomal Proteins L2, RNA binding domain Atu1944 PF00276 Ribosomal protein L23 Atu1945 PF00573 Ribosomal protein L4/L1 family Atu1946 PF00297 Ribosomal protein L3 Atu1947 PF00338 Ribosomal protein S10p/S20e Atu1948 PF03143 Elongation factor Tu C-terminal domain Atu1948 PF03144 Elongation factor Tu domain 2 Atu1948 PF00009 Elongation factor Tu GTP binding domain Atu1949 PF00009 Elongation factor Tu GTP binding domain Atu1949 PF03144 Elongation factor Tu domain 2 Atu1949 PF03764 Elongation factor G, domain IV Atu1949 PF14492 Elongation Factor G, domain II Atu1949 PF00679 Elongation factor G C-terminus Atu1950 PF00177 Ribosomal protein S7p/S5e Atu1951 PF00164 Ribosomal protein S12/S23 Atu1955 PF04997 RNA polymerase Rpb1, domain 1 Atu1955 PF04998 RNA polymerase Rpb1, domain 5 Atu1955 PF05000 RNA polymerase Rpb1, domain 4 Atu1955 PF00623 RNA polymerase Rpb1, domain 2 Atu1955 PF04983 RNA polymerase Rpb1, domain 3 Atu1956 PF10385 RNA polymerase beta subunit external 1 domain Atu1956 PF04560 RNA polymerase Rpb2, domain 7 Atu1956 PF04563 RNA polymerase beta subunit Atu1956 PF00562 RNA polymerase Rpb2, domain 6 Atu1956 PF04565 RNA polymerase Rpb2, domain 3 Atu1956 PF04561 RNA polymerase Rpb2, domain 2 Atu1957 PF16320 Ribosomal protein L7/L12 dimerisation domain Atu1957 PF00542 Ribosomal protein L7/L12 C-terminal domain Atu1958 PF00466 Ribosomal protein L10 Atu1959 PF00687 Ribosomal protein L1p/L10e family Atu1960 PF00298 Ribosomal protein L11, RNA binding domain Atu1960 PF03946 Ribosomal protein L11, N-terminal domain Atu1961 PF00467 KOW motif Atu1961 PF02357 Transcription termination factor nusG Atu1962 PF00584 SecE/Sec61-gamma subunits of protein translocation complex Atu1965 PF02719 Polysaccharide biosynthesis protein Atu1965 PF08485 Polysaccharide biosynthesis protein C-terminal Atu1966 PF03143 Elongation factor Tu C-terminal domain Atu1966 PF03144 Elongation factor Tu domain 2 Atu1966 PF00009 Elongation factor Tu GTP binding domain Atu1967 PF03741 Integral membrane protein TerC family Atu1969 PF09864 Membrane-bound lysozyme-inhibitor of c-type lysozyme Atu1977 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Atu1977 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu1982 PF04545 Sigma-70, region 4 Atu1982 PF04542 Sigma-70 region 2 Atu1984 PF00158 Sigma-54 interaction domain Atu1984 PF00072 Response regulator receiver domain Atu1984 PF02954 Bacterial regulatory protein, Fis family Atu1985 PF00072 Response regulator receiver domain Atu1985 PF08769 Sporulation initiation factor Spo0A C terminal Atu1986 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu1986 PF00072 Response regulator receiver domain Atu1986 PF00512 His Kinase A (phospho-acceptor) domain Atu1986 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1986 PF01627 Hpt domain Atu1987 PF00072 Response regulator receiver domain Atu1988 PF07536 HWE histidine kinase Atu1988 PF08447 PAS fold Atu1988 PF13426 PAS domain Atu1989 PF00072 Response regulator receiver domain Atu1990 PF00512 His Kinase A (phospho-acceptor) domain Atu1990 PF08446 PAS fold Atu1990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu1990 PF00360 Phytochrome region Atu1990 PF01590 GAF domain Atu1993 PF08032 RNA 2'-O ribose methyltransferase substrate binding Atu1993 PF00588 SpoU rRNA Methylase family Atu1994 PF03061 Thioesterase superfamily Atu1999 PF13460 NAD(P)H-binding Atu2000 PF01638 HxlR-like helix-turn-helix Atu2001 PF17757 UvrB interaction domain Atu2001 PF04851 Type III restriction enzyme, res subunit Atu2001 PF00271 Helicase conserved C-terminal domain Atu2001 PF12344 Ultra-violet resistance protein B Atu2001 PF02151 UvrB/uvrC motif Atu2002 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Atu2002 PF00756 Putative esterase Atu2006 PF00684 DnaJ central domain Atu2006 PF01556 DnaJ C terminal domain Atu2006 PF00226 DnaJ domain Atu2010 PF17151 Periplasmic sensor domain Atu2010 PF00990 Diguanylate cyclase, GGDEF domain Atu2012 PF08402 TOBE domain Atu2012 PF00005 ABC transporter Atu2014 PF01547 Bacterial extracellular solute-binding protein Atu2015 PF00155 Aminotransferase class I and II Atu2016 PF05025 RbsD / FucU transport protein family Atu2017 PF06769 YoeB-like toxin of bacterial type II toxin-antitoxin system Atu2019 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain Atu2019 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain Atu2021 PF06719 AraC-type transcriptional regulator N-terminus Atu2021 PF12833 Helix-turn-helix domain Atu2022 PF08240 Alcohol dehydrogenase GroES-like domain Atu2022 PF00107 Zinc-binding dehydrogenase Atu2023 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu2024 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ Atu2025 PF00196 Bacterial regulatory proteins, luxR family Atu2025 PF03472 Autoinducer binding domain Atu2026 PF14490 Helix-hairpin-helix containing domain Atu2026 PF13538 UvrD-like helicase C-terminal domain Atu2026 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain Atu2030 PF08281 Sigma-70, region 4 Atu2030 PF04542 Sigma-70 region 2 Atu2032 PF00248 Aldo/keto reductase family Atu2035 PF10369 Small subunit of acetolactate synthase Atu2036 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Atu2036 PF00205 Thiamine pyrophosphate enzyme, central domain Atu2036 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Atu2041 PF13302 Acetyltransferase (GNAT) domain Atu2043 PF13180 PDZ domain Atu2044 PF01145 SPFH domain / Band 7 family Atu2045 PF01145 SPFH domain / Band 7 family Atu2046 PF00186 Dihydrofolate reductase Atu2047 PF00303 Thymidylate synthase Atu2053 PF02913 FAD linked oxidases, C-terminal domain Atu2053 PF01565 FAD binding domain Atu2054 PF00873 AcrB/AcrD/AcrF family Atu2055 PF13533 Biotin-lipoyl like Atu2057 PF13361 UvrD-like helicase C-terminal domain Atu2057 PF00580 UvrD/REP helicase N-terminal domain Atu2059 PF00440 Bacterial regulatory proteins, tetR family Atu2059 PF13977 BetI-type transcriptional repressor, C-terminal Atu2060 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Atu2061 PF00561 alpha/beta hydrolase fold Atu2066 PF00857 Isochorismatase family Atu2070 PF00557 Metallopeptidase family M24 Atu2070 PF01321 Creatinase/Prolidase N-terminal domain Atu2073 PF02630 SCO1/SenC Atu2075 PF01584 CheW-like domain Atu2077 PF00929 Exonuclease Atu2078 PF03466 LysR substrate binding domain Atu2078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2080 PF00583 Acetyltransferase (GNAT) family Atu2081 PF01636 Phosphotransferase enzyme family Atu2082 PF01653 NAD-dependent DNA ligase adenylation domain Atu2082 PF03120 NAD-dependent DNA ligase OB-fold domain Atu2082 PF03119 NAD-dependent DNA ligase C4 zinc finger domain Atu2082 PF12826 Helix-hairpin-helix motif Atu2082 PF00533 BRCA1 C Terminus (BRCT) domain Atu2083 PF02463 RecF/RecN/SMC N terminal domain Atu2084 PF13525 Outer membrane lipoprotein Atu2085 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase Atu2086 PF12327 FtsZ family, C-terminal domain Atu2086 PF00091 Tubulin/FtsZ family, GTPase domain Atu2087 PF02491 SHS2 domain inserted in FTSA Atu2088 PF08478 POTRA domain, FtsQ-type Atu2088 PF03799 Cell division protein FtsQ Atu2089 PF07478 D-ala D-ala ligase C-terminus Atu2089 PF01820 D-ala D-ala ligase N-terminus Atu2090 PF00083 Sugar (and other) transporter Atu2090 PF07690 Major Facilitator Superfamily Atu2091 PF00563 EAL domain Atu2091 PF13188 PAS domain Atu2091 PF03707 Bacterial signalling protein N terminal repeat Atu2091 PF00990 Diguanylate cyclase, GGDEF domain Atu2092 PF01565 FAD binding domain Atu2092 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain Atu2093 PF08245 Mur ligase middle domain Atu2093 PF02875 Mur ligase family, glutamate ligase domain Atu2093 PF01225 Mur ligase family, catalytic domain Atu2094 PF04101 Glycosyltransferase family 28 C-terminal domain Atu2094 PF03033 Glycosyltransferase family 28 N-terminal domain Atu2095 PF01098 Cell cycle protein Atu2096 PF08245 Mur ligase middle domain Atu2096 PF02875 Mur ligase family, glutamate ligase domain Atu2097 PF00953 Glycosyl transferase family 4 Atu2097 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 Atu2098 PF01225 Mur ligase family, catalytic domain Atu2098 PF02875 Mur ligase family, glutamate ligase domain Atu2098 PF08245 Mur ligase middle domain Atu2099 PF08245 Mur ligase middle domain Atu2099 PF01225 Mur ligase family, catalytic domain Atu2099 PF02875 Mur ligase family, glutamate ligase domain Atu2100 PF00905 Penicillin binding protein transpeptidase domain Atu2100 PF03717 Penicillin-binding Protein dimerisation domain Atu2102 PF01795 MraW methylase family Atu2103 PF02381 MraZ protein, putative antitoxin-like Atu2104 PF03994 Domain of Unknown Function (DUF350) Atu2107 PF13276 HTH-like domain Atu2107 PF13333 Integrase core domain Atu2107 PF00665 Integrase core domain Atu2107 PF01527 Transposase Atu2113 PF01510 N-acetylmuramoyl-L-alanine amidase Atu2114 PF05099 Tellurite resistance protein TerB Atu2114 PF00226 DnaJ domain Atu2115 PF00365 Phosphofructokinase Atu2120 PF13649 Methyltransferase domain Atu2121 PF01183 Glycosyl hydrolases family 25 Atu2123 PF02219 Methylenetetrahydrofolate reductase Atu2124 PF01209 ubiE/COQ5 methyltransferase family Atu2125 PF00005 ABC transporter Atu2125 PF12848 ABC transporter Atu2126 PF12146 Serine aminopeptidase, S33 Atu2127 PF02515 CoA-transferase family III Atu2128 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Atu2128 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Atu2128 PF00205 Thiamine pyrophosphate enzyme, central domain Atu2130 PF01042 Endoribonuclease L-PSP Atu2133 PF01476 LysM domain Atu2133 PF03734 L,D-transpeptidase catalytic domain Atu2134 PF07690 Major Facilitator Superfamily Atu2136 PF10609 NUBPL iron-transfer P-loop NTPase Atu2138 PF00465 Iron-containing alcohol dehydrogenase Atu2139 PF00171 Aldehyde dehydrogenase family Atu2142 PF03951 Glutamine synthetase, beta-Grasp domain Atu2142 PF00120 Glutamine synthetase, catalytic domain Atu2143 PF13520 Amino acid permease Atu2145 PF01418 Helix-turn-helix domain, rpiR family Atu2145 PF01380 SIS domain Atu2150 PF08402 TOBE domain Atu2150 PF00005 ABC transporter Atu2151 PF08240 Alcohol dehydrogenase GroES-like domain Atu2151 PF00107 Zinc-binding dehydrogenase Atu2154 PF07690 Major Facilitator Superfamily Atu2155 PF02607 B12 binding domain Atu2155 PF00809 Pterin binding enzyme Atu2155 PF02965 Vitamin B12 dependent methionine synthase, activation domain Atu2155 PF02310 B12 binding domain Atu2155 PF02574 Homocysteine S-methyltransferase Atu2159 PF13505 Outer membrane protein beta-barrel domain Atu2162 PF04402 Protein of unknown function (DUF541) Atu2164 PF01894 Uncharacterised protein family UPF0047 Atu2165 PF01590 GAF domain Atu2165 PF00360 Phytochrome region Atu2165 PF08446 PAS fold Atu2165 PF00512 His Kinase A (phospho-acceptor) domain Atu2165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2167 PF03979 Sigma-70 factor, region 1.1 Atu2167 PF04546 Sigma-70, non-essential region Atu2167 PF04545 Sigma-70, region 4 Atu2167 PF04539 Sigma-70 region 3 Atu2167 PF00140 Sigma-70 factor, region 1.2 Atu2167 PF04542 Sigma-70 region 2 Atu2168 PF10410 DnaB-helicase binding domain of primase Atu2168 PF08278 DNA primase DnaG DnaB-binding Atu2168 PF01807 CHC2 zinc finger Atu2168 PF08275 DNA primase catalytic core, N-terminal domain Atu2170 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain Atu2170 PF00117 Glutamine amidotransferase class-I Atu2171 PF00561 alpha/beta hydrolase fold Atu2172 PF01554 MatE Atu2173 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu2173 PF00672 HAMP domain Atu2173 PF02743 Cache domain Atu2175 PF04228 Putative neutral zinc metallopeptidase Atu2178 PF02142 MGS-like domain Atu2178 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Atu2178 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu2179 PF00990 Diguanylate cyclase, GGDEF domain Atu2179 PF07694 5TMR of 5TMR-LYT Atu2182 PF03449 Transcription elongation factor, N-terminal Atu2182 PF01272 Transcription elongation factor, GreA/GreB, C-term Atu2183 PF00534 Glycosyl transferases group 1 Atu2184 PF01037 Lrp/AsnC ligand binding domain Atu2185 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu2186 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2186 PF03466 LysR substrate binding domain Atu2188 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Atu2191 PF03466 LysR substrate binding domain Atu2191 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2195 PF01699 Sodium/calcium exchanger protein Atu2197 PF00563 EAL domain Atu2197 PF05231 MASE1 Atu2200 PF00313 'Cold-shock' DNA-binding domain Atu2201 PF00753 Metallo-beta-lactamase superfamily Atu2205 PF12802 MarR family Atu2206 PF00072 Response regulator receiver domain Atu2206 PF00486 Transcriptional regulatory protein, C terminal Atu2207 PF00672 HAMP domain Atu2207 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2207 PF00512 His Kinase A (phospho-acceptor) domain Atu2207 PF16527 Two-component sensor protein CpxA, periplasmic domain Atu2208 PF01588 Putative tRNA binding domain Atu2209 PF03807 NADP oxidoreductase coenzyme F420-dependent Atu2209 PF14748 Pyrroline-5-carboxylate reductase dimerisation Atu2213 PF01790 Prolipoprotein diacylglyceryl transferase Atu2218 PF14572 Phosphoribosyl synthetase-associated domain Atu2218 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase Atu2220 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase Atu2222 PF00535 Glycosyl transferase family 2 Atu2223 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu2223 PF00672 HAMP domain Atu2224 PF00171 Aldehyde dehydrogenase family Atu2225 PF02954 Bacterial regulatory protein, Fis family Atu2226 PF00563 EAL domain Atu2226 PF00990 Diguanylate cyclase, GGDEF domain Atu2226 PF03707 Bacterial signalling protein N terminal repeat Atu2226 PF13188 PAS domain Atu2227 PF14693 Ribosomal protein TL5, C-terminal domain Atu2227 PF01386 Ribosomal L25p family Atu2228 PF00990 Diguanylate cyclase, GGDEF domain Atu2228 PF00563 EAL domain Atu2228 PF08448 PAS fold Atu2228 PF08447 PAS fold Atu2230 PF01195 Peptidyl-tRNA hydrolase Atu2232 PF02617 ATP-dependent Clp protease adaptor protein ClpS Atu2233 PF01926 50S ribosome-binding GTPase Atu2233 PF06071 Protein of unknown function (DUF933) Atu2236 PF00156 Phosphoribosyl transferase domain Atu2237 PF00033 Cytochrome b/b6/petB Atu2237 PF02167 Cytochrome C1 family Atu2237 PF00032 Cytochrome b(C-terminal)/b6/petD Atu2238 PF00033 Cytochrome b/b6/petB Atu2238 PF00032 Cytochrome b(C-terminal)/b6/petD Atu2239 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal Atu2239 PF00355 Rieske [2Fe-2S] domain Atu2241 PF00664 ABC transporter transmembrane region Atu2241 PF00005 ABC transporter Atu2242 PF00664 ABC transporter transmembrane region Atu2242 PF00005 ABC transporter Atu2243 PF00149 Calcineurin-like phosphoesterase Atu2244 PF00588 SpoU rRNA Methylase family Atu2245 PF02690 Na+/Pi-cotransporter Atu2247 PF01218 Coproporphyrinogen III oxidase Atu2250 PF12627 Probable RNA and SrmB- binding site of polymerase A Atu2250 PF13735 tRNA nucleotidyltransferase domain 2 putative Atu2250 PF01743 Poly A polymerase head domain Atu2251 PF00293 NUDIX domain Atu2253 PF17863 AAA lid domain Atu2253 PF07726 ATPase family associated with various cellular activities (AAA) Atu2258 PF00583 Acetyltransferase (GNAT) family Atu2259 PF07690 Major Facilitator Superfamily Atu2261 PF13409 Glutathione S-transferase, N-terminal domain Atu2262 PF00293 NUDIX domain Atu2264 PF00682 HMGL-like Atu2264 PF08502 LeuA allosteric (dimerisation) domain Atu2265 PF03594 Benzoate membrane transport protein Atu2268 PF08281 Sigma-70, region 4 Atu2268 PF04542 Sigma-70 region 2 Atu2270 PF00574 Clp protease Atu2271 PF04955 HupE / UreJ protein Atu2273 PF14489 QueF-like protein Atu2274 PF01545 Cation efflux family Atu2274 PF16916 Dimerisation domain of Zinc Transporter Atu2276 PF13458 Periplasmic binding protein Atu2278 PF01022 Bacterial regulatory protein, arsR family Atu2279 PF00571 CBS domain Atu2279 PF00005 ABC transporter Atu2280 PF00528 Binding-protein-dependent transport system inner membrane component Atu2281 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Atu2282 PF00265 Thymidine kinase Atu2283 PF00127 Copper binding proteins, plastocyanin/azurin family Atu2285 PF00196 Bacterial regulatory proteins, luxR family Atu2285 PF03472 Autoinducer binding domain Atu2286 PF03350 Uncharacterized protein family, UPF0114 Atu2287 PF04886 PT repeat Atu2287 PF07715 TonB-dependent Receptor Plug Domain Atu2287 PF00593 TonB dependent receptor Atu2289 PF00117 Glutamine amidotransferase class-I Atu2289 PF00425 chorismate binding enzyme Atu2289 PF04715 Anthranilate synthase component I, N terminal region Atu2291 PF01966 HD domain Atu2291 PF11871 Domain of unknown function (DUF3391) Atu2292 PF01979 Amidohydrolase family Atu2292 PF13382 Adenine deaminase C-terminal domain Atu2294 PF00583 Acetyltransferase (GNAT) family Atu2295 PF00128 Alpha amylase, catalytic domain Atu2296 PF00294 pfkB family carbohydrate kinase Atu2300 PF01926 50S ribosome-binding GTPase Atu2300 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal Atu2304 PF05992 SbmA/BacA-like family Atu2306 PF00557 Metallopeptidase family M24 Atu2309 PF00111 2Fe-2S iron-sulfur cluster binding domain Atu2309 PF01799 [2Fe-2S] binding domain Atu2310 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Atu2310 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Atu2312 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2312 PF03466 LysR substrate binding domain Atu2315 PF01979 Amidohydrolase family Atu2318 PF01070 FMN-dependent dehydrogenase Atu2319 PF00893 Small Multidrug Resistance protein Atu2320 PF17932 Tetracyclin repressor-like, C-terminal domain Atu2320 PF00440 Bacterial regulatory proteins, tetR family Atu2321 PF07943 Penicillin-binding protein 5, C-terminal domain Atu2321 PF00768 D-alanyl-D-alanine carboxypeptidase Atu2323 PF00576 HIUase/Transthyretin family Atu2324 PF04115 Ureidoglycolate lyase Atu2327 PF09349 OHCU decarboxylase Atu2327 PF01014 Uricase Atu2329 PF06299 Protein of unknown function (DUF1045) Atu2331 PF01266 FAD dependent oxidoreductase Atu2331 PF05430 S-adenosyl-L-methionine-dependent methyltransferase Atu2332 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Atu2332 PF00512 His Kinase A (phospho-acceptor) domain Atu2332 PF01627 Hpt domain Atu2332 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2332 PF00672 HAMP domain Atu2332 PF00072 Response regulator receiver domain Atu2333 PF00270 DEAD/DEAH box helicase Atu2333 PF00271 Helicase conserved C-terminal domain Atu2334 PF00892 EamA-like transporter family Atu2335 PF07681 DoxX Atu2336 PF03734 L,D-transpeptidase catalytic domain Atu2336 PF01476 LysM domain Atu2338 PF14403 Circularly permuted ATP-grasp type 2 Atu2340 PF08379 Bacterial transglutaminase-like N-terminal region Atu2340 PF01841 Transglutaminase-like superfamily Atu2343 PF00583 Acetyltransferase (GNAT) family Atu2346 PF02653 Branched-chain amino acid transport system / permease component Atu2347 PF00005 ABC transporter Atu2348 PF13407 Periplasmic binding protein domain Atu2350 PF03466 LysR substrate binding domain Atu2350 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2358 PF01757 Acyltransferase family Atu2360 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu2360 PF00672 HAMP domain Atu2361 PF07690 Major Facilitator Superfamily Atu2362 PF02965 Vitamin B12 dependent methionine synthase, activation domain Atu2362 PF02607 B12 binding domain Atu2362 PF02574 Homocysteine S-methyltransferase Atu2362 PF00809 Pterin binding enzyme Atu2362 PF02310 B12 binding domain Atu2363 PF00528 Binding-protein-dependent transport system inner membrane component Atu2364 PF00528 Binding-protein-dependent transport system inner membrane component Atu2365 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu2366 PF00005 ABC transporter Atu2371 PF00331 Glycosyl hydrolase family 10 Atu2372 PF00535 Glycosyl transferase family 2 Atu2375 PF03808 Glycosyl transferase WecB/TagA/CpsF family Atu2379 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Atu2379 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Atu2379 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Atu2379 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Atu2380 PF01152 Bacterial-like globin Atu2384 PF08362 YcdC-like protein, C-terminal region Atu2384 PF00440 Bacterial regulatory proteins, tetR family Atu2385 PF01546 Peptidase family M20/M25/M40 Atu2385 PF07687 Peptidase dimerisation domain Atu2386 PF01979 Amidohydrolase family Atu2387 PF00293 NUDIX domain Atu2388 PF00005 ABC transporter Atu2389 PF00528 Binding-protein-dependent transport system inner membrane component Atu2390 PF00528 Binding-protein-dependent transport system inner membrane component Atu2393 PF00873 AcrB/AcrD/AcrF family Atu2395 PF12706 Beta-lactamase superfamily domain Atu2395 PF00753 Metallo-beta-lactamase superfamily Atu2396 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu2397 PF01730 UreF Atu2398 PF05194 UreE urease accessory protein, C-terminal domain Atu2398 PF02814 UreE urease accessory protein, N-terminal domain Atu2399 PF08534 Redoxin Atu2401 PF00449 Urease alpha-subunit, N-terminal domain Atu2401 PF01979 Amidohydrolase family Atu2403 PF07007 Lysozyme inhibitor LprI Atu2405 PF00699 Urease beta subunit Atu2406 PF06906 Protein of unknown function (DUF1272) Atu2407 PF00547 Urease, gamma subunit Atu2408 PF01774 UreD urease accessory protein Atu2410 PF00005 ABC transporter Atu2411 PF00005 ABC transporter Atu2411 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu2413 PF02653 Branched-chain amino acid transport system / permease component Atu2415 PF10931 Protein of unknown function (DUF2735) Atu2416 PF03951 Glutamine synthetase, beta-Grasp domain Atu2416 PF00120 Glutamine synthetase, catalytic domain Atu2417 PF00106 short chain dehydrogenase Atu2418 PF01627 Hpt domain Atu2418 PF18415 Histidine kinase receptor ArcB trans-membrane domain Atu2418 PF00989 PAS fold Atu2418 PF00512 His Kinase A (phospho-acceptor) domain Atu2418 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2418 PF00072 Response regulator receiver domain Atu2419 PF00072 Response regulator receiver domain Atu2421 PF01522 Polysaccharide deacetylase Atu2422 PF13458 Periplasmic binding protein Atu2424 PF00005 ABC transporter Atu2425 PF00005 ABC transporter Atu2425 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu2426 PF11862 Domain of unknown function (DUF3382) Atu2426 PF02653 Branched-chain amino acid transport system / permease component Atu2427 PF02653 Branched-chain amino acid transport system / permease component Atu2428 PF00459 Inositol monophosphatase family Atu2434 PF00486 Transcriptional regulatory protein, C terminal Atu2434 PF00072 Response regulator receiver domain Atu2438 PF10090 Histidine phosphotransferase C-terminal domain Atu2441 PF00588 SpoU rRNA Methylase family Atu2443 PF00849 RNA pseudouridylate synthase Atu2445 PF04542 Sigma-70 region 2 Atu2445 PF00140 Sigma-70 factor, region 1.2 Atu2445 PF04545 Sigma-70, region 4 Atu2447 PF00709 Adenylosuccinate synthetase Atu2453 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu2455 PF03167 Uracil DNA glycosylase superfamily Atu2456 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu2457 PF04304 Protein of unknown function (DUF454) Atu2458 PF00005 ABC transporter Atu2459 PF01032 FecCD transport family Atu2460 PF01497 Periplasmic binding protein Atu2462 PF06228 Haem utilisation ChuX/HutX Atu2464 PF00551 Formyl transferase Atu2465 PF00672 HAMP domain Atu2465 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2465 PF00512 His Kinase A (phospho-acceptor) domain Atu2466 PF00072 Response regulator receiver domain Atu2466 PF00486 Transcriptional regulatory protein, C terminal Atu2469 PF03401 Tripartite tricarboxylate transporter family receptor Atu2471 PF01970 Tripartite tricarboxylate transporter TctA family Atu2474 PF01032 FecCD transport family Atu2475 PF01032 FecCD transport family Atu2476 PF00005 ABC transporter Atu2477 PF00210 Ferritin-like domain Atu2480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2480 PF03466 LysR substrate binding domain Atu2482 PF13533 Biotin-lipoyl like Atu2483 PF00873 AcrB/AcrD/AcrF family Atu2486 PF13091 PLD-like domain Atu2486 PF13396 Phospholipase_D-nuclease N-terminal Atu2487 PF08543 Phosphomethylpyrimidine kinase Atu2488 PF00484 Carbonic anhydrase Atu2490 PF01118 Semialdehyde dehydrogenase, NAD binding domain Atu2490 PF02774 Semialdehyde dehydrogenase, dimerisation domain Atu2492 PF00083 Sugar (and other) transporter Atu2493 PF05222 Alanine dehydrogenase/PNT, N-terminal domain Atu2493 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch Atu2493 PF01262 Alanine dehydrogenase/PNT, C-terminal domain Atu2494 PF02233 NAD(P) transhydrogenase beta subunit Atu2495 PF01613 Flavin reductase like domain Atu2496 PF00881 Nitroreductase family Atu2497 PF00561 alpha/beta hydrolase fold Atu2498 PF01042 Endoribonuclease L-PSP Atu2499 PF00857 Isochorismatase family Atu2500 PF00296 Luciferase-like monooxygenase Atu2502 PF01126 Heme oxygenase Atu2503 PF00701 Dihydrodipicolinate synthetase family Atu2504 PF07729 FCD domain Atu2504 PF00392 Bacterial regulatory proteins, gntR family Atu2506 PF00528 Binding-protein-dependent transport system inner membrane component Atu2507 PF00528 Binding-protein-dependent transport system inner membrane component Atu2508 PF00005 ABC transporter Atu2508 PF03459 TOBE domain Atu2508 PF17912 MalK OB fold domain Atu2509 PF00294 pfkB family carbohydrate kinase Atu2510 PF03576 Peptidase family S58 Atu2511 PF01063 Amino-transferase class IV Atu2512 PF03466 LysR substrate binding domain Atu2512 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2514 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu2514 PF00005 ABC transporter Atu2515 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu2515 PF00005 ABC transporter Atu2517 PF00528 Binding-protein-dependent transport system inner membrane component Atu2518 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu2519 PF01244 Membrane dipeptidase (Peptidase family M19) Atu2521 PF03706 Lysylphosphatidylglycerol synthase TM region Atu2521 PF09924 Uncharacterised conserved protein (DUF2156) Atu2525 PF07690 Major Facilitator Superfamily Atu2527 PF00775 Dioxygenase Atu2527 PF04444 Catechol dioxygenase N terminus Atu2528 PF00465 Iron-containing alcohol dehydrogenase Atu2530 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu2530 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Atu2531 PF01613 Flavin reductase like domain Atu2535 PF00512 His Kinase A (phospho-acceptor) domain Atu2535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu2536 PF00072 Response regulator receiver domain Atu2536 PF00486 Transcriptional regulatory protein, C terminal Atu2538 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Atu2548 PF01259 SAICAR synthetase Atu2550 PF00529 HlyD membrane-fusion protein of T1SS Atu2550 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu2551 PF00873 AcrB/AcrD/AcrF family Atu2552 PF02321 Outer membrane efflux protein Atu2553 PF01132 Elongation factor P (EF-P) OB domain Atu2553 PF08207 Elongation factor P (EF-P) KOW-like domain Atu2553 PF09285 Elongation factor P, C-terminal Atu2554 PF00152 tRNA synthetases class II (D, K and N) Atu2555 PF12544 Lysine-2,3-aminomutase Atu2555 PF04055 Radical SAM superfamily Atu2559 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu2559 PF03466 LysR substrate binding domain Atu2560 PF01266 FAD dependent oxidoreductase Atu2562 PF00528 Binding-protein-dependent transport system inner membrane component Atu2563 PF00005 ABC transporter Atu2563 PF03459 TOBE domain Atu2565 PF03576 Peptidase family S58 Atu2566 PF05690 Thiazole biosynthesis protein ThiG Atu2568 PF01266 FAD dependent oxidoreductase Atu2569 PF01964 Radical SAM ThiC family Atu2569 PF13667 ThiC-associated domain Atu2571 PF00550 Phosphopantetheine attachment site Atu2577 PF00664 ABC transporter transmembrane region Atu2577 PF00005 ABC transporter Atu2578 PF00027 Cyclic nucleotide-binding domain Atu2578 PF13545 Crp-like helix-turn-helix domain Atu2580 PF00211 Adenylate and Guanylate cyclase catalytic domain Atu2580 PF00672 HAMP domain Atu2582 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Atu2582 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Atu2582 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Atu2583 PF00534 Glycosyl transferases group 1 Atu2583 PF13439 Glycosyltransferase Family 4 Atu2586 PF00005 ABC transporter Atu2586 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu2587 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu2588 PF00528 Binding-protein-dependent transport system inner membrane component Atu2589 PF00528 Binding-protein-dependent transport system inner membrane component Atu2589 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu2591 PF13439 Glycosyltransferase Family 4 Atu2591 PF00534 Glycosyl transferases group 1 Atu2592 PF03033 Glycosyltransferase family 28 N-terminal domain Atu2592 PF04101 Glycosyltransferase family 28 C-terminal domain Atu2593 PF03932 CutC family Atu2596 PF00728 Glycosyl hydrolase family 20, catalytic domain Atu2596 PF02838 Glycosyl hydrolase family 20, domain 2 Atu2598 PF01418 Helix-turn-helix domain, rpiR family Atu2598 PF01380 SIS domain Atu2600 PF00005 ABC transporter Atu2600 PF03459 TOBE domain Atu2600 PF17912 MalK OB fold domain Atu2601 PF01547 Bacterial extracellular solute-binding protein Atu2602 PF00528 Binding-protein-dependent transport system inner membrane component Atu2603 PF00528 Binding-protein-dependent transport system inner membrane component Atu2607 PF01380 SIS domain Atu2608 PF01979 Amidohydrolase family Atu2609 PF00480 ROK family Atu2610 PF01494 FAD binding domain Atu2611 PF01569 PAP2 superfamily Atu2612 PF13288 DXP reductoisomerase C-terminal domain Atu2612 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase Atu2612 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain Atu2613 PF00155 Aminotransferase class I and II Atu2615 PF07244 Surface antigen variable number repeat Atu2615 PF17243 POTRA domain TamA domain 1 Atu2615 PF01103 Surface antigen Atu2617 PF01584 CheW-like domain Atu2618 PF08447 PAS fold Atu2618 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu2618 PF13426 PAS domain Atu2619 PF02634 FdhD/NarQ family Atu2621 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain Atu2622 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Atu2622 PF02874 ATP synthase alpha/beta family, beta-barrel domain Atu2623 PF00231 ATP synthase Atu2624 PF02874 ATP synthase alpha/beta family, beta-barrel domain Atu2624 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Atu2624 PF00306 ATP synthase alpha/beta chain, C terminal domain Atu2625 PF00213 ATP synthase delta (OSCP) subunit Atu2627 PF18319 PriA DNA helicase Cys-rich region (CRR) domain Atu2627 PF18074 Primosomal protein N C-terminal domain Atu2627 PF17764 3′ DNA-binding domain (3′BD) Atu2627 PF00270 DEAD/DEAH box helicase Atu2628 PF00589 Phage integrase family Atu2628 PF02899 Phage integrase, N-terminal SAM-like domain Atu2632 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Atu2632 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu2633 PF01810 LysE type translocator Atu2635 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Atu2635 PF02817 e3 binding domain Atu2635 PF00364 Biotin-requiring enzyme Atu2636 PF02779 Transketolase, pyrimidine binding domain Atu2636 PF16870 2-oxoglutarate dehydrogenase C-terminal Atu2636 PF16078 2-oxoglutarate dehydrogenase N-terminus Atu2636 PF00676 Dehydrogenase E1 component Atu2637 PF00549 CoA-ligase Atu2637 PF02629 CoA binding domain Atu2638 PF08442 ATP-grasp domain Atu2638 PF00549 CoA-ligase Atu2639 PF00056 lactate/malate dehydrogenase, NAD binding domain Atu2639 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain Atu2640 PF03969 AFG1-like ATPase Atu2641 PF02974 Protease inhibitor Inh Atu2642 PF13085 2Fe-2S iron-sulfur cluster binding domain Atu2642 PF13237 4Fe-4S dicluster domain Atu2643 PF02910 Fumarate reductase flavoprotein C-term Atu2643 PF00890 FAD binding domain Atu2645 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit Atu2650 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus Atu2650 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Atu2651 PF00814 Glycoprotease family Atu2652 PF03900 Porphobilinogen deaminase, C-terminal domain Atu2652 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain Atu2658 PF00117 Glutamine amidotransferase class-I Atu2660 PF02594 Uncharacterised ACR, YggU family COG1872 Atu2661 PF00719 Inorganic pyrophosphatase Atu2664 PF01432 Peptidase family M3 Atu2665 PF01047 MarR family Atu2666 PF07690 Major Facilitator Superfamily Atu2667 PF00764 Arginosuccinate synthase Atu2668 PF00106 short chain dehydrogenase Atu2669 PF01810 LysE type translocator Atu2670 PF00005 ABC transporter Atu2671 PF02653 Branched-chain amino acid transport system / permease component Atu2673 PF04055 Radical SAM superfamily Atu2676 PF01329 Pterin 4 alpha carbinolamine dehydratase Atu2677 PF01451 Low molecular weight phosphotyrosine protein phosphatase Atu2678 PF02834 LigT like Phosphoesterase Atu2679 PF13472 GDSL-like Lipase/Acylhydrolase family Atu2680 PF00005 ABC transporter Atu2682 PF01027 Inhibitor of apoptosis-promoting Bax1 Atu2685 PF00330 Aconitase family (aconitate hydratase) Atu2685 PF00694 Aconitase C-terminal domain Atu2686 PF00005 ABC transporter Atu2687 PF03379 CcmB protein Atu2688 PF01578 Cytochrome C assembly protein Atu2690 PF08534 Redoxin Atu2691 PF00990 Diguanylate cyclase, GGDEF domain Atu2692 PF04279 Intracellular septation protein A Atu2693 PF00448 SRP54-type protein, GTPase domain Atu2693 PF02881 SRP54-type protein, helical bundle domain Atu2694 PF00919 Uncharacterized protein family UPF0004 Atu2694 PF04055 Radical SAM superfamily Atu2695 PF01678 Diaminopimelate epimerase Atu2696 PF12706 Beta-lactamase superfamily domain Atu2697 PF02881 SRP54-type protein, helical bundle domain Atu2697 PF00448 SRP54-type protein, GTPase domain Atu2697 PF02978 Signal peptide binding domain Atu2698 PF01817 Chorismate mutase type II Atu2698 PF02153 Prephenate dehydrogenase Atu2699 PF00886 Ribosomal protein S16 Atu2700 PF05239 PRC-barrel domain Atu2700 PF01782 RimM N-terminal domain Atu2701 PF01746 tRNA (Guanine-1)-methyltransferase Atu2703 PF01245 Ribosomal protein L19 Atu2705 PF00664 ABC transporter transmembrane region Atu2705 PF00005 ABC transporter Atu2706 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu2706 PF00529 HlyD membrane-fusion protein of T1SS Atu2708 PF07690 Major Facilitator Superfamily Atu2709 PF00330 Aconitase family (aconitate hydratase) Atu2710 PF01435 Peptidase family M48 Atu2712 PF00005 ABC transporter Atu2713 PF00528 Binding-protein-dependent transport system inner membrane component Atu2714 PF01547 Bacterial extracellular solute-binding protein Atu2718 PF04204 Homoserine O-succinyltransferase Atu2719 PF01263 Aldose 1-epimerase Atu2720 PF00912 Transglycosylase Atu2721 PF00348 Polyprenyl synthetase Atu2722 PF00691 OmpA family Atu2722 PF13488 Glycine zipper Atu2723 PF04551 GcpE protein Atu2724 PF07690 Major Facilitator Superfamily Atu2725 PF00455 DeoR C terminal sensor domain Atu2725 PF08220 DeoR-like helix-turn-helix domain Atu2726 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu2726 PF02436 Conserved carboxylase domain Atu2726 PF00364 Biotin-requiring enzyme Atu2726 PF00289 Biotin carboxylase, N-terminal domain Atu2726 PF02785 Biotin carboxylase C-terminal domain Atu2726 PF00682 HMGL-like Atu2727 PF00196 Bacterial regulatory proteins, luxR family Atu2727 PF00072 Response regulator receiver domain Atu2728 PF00664 ABC transporter transmembrane region Atu2728 PF00005 ABC transporter Atu2730 PF10091 Putative glucoamylase Atu2730 PF06165 Glycosyltransferase family 36 Atu2730 PF17167 Glycosyl hydrolase 36 superfamily, catalytic domain Atu2732 PF01546 Peptidase family M20/M25/M40 Atu2732 PF07687 Peptidase dimerisation domain Atu2734 PF01266 FAD dependent oxidoreductase Atu2735 PF00291 Pyridoxal-phosphate dependent enzyme Atu2736 PF00920 Dehydratase family Atu2737 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu2737 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Atu2738 PF01370 NAD dependent epimerase/dehydratase family Atu2739 PF02913 FAD linked oxidases, C-terminal domain Atu2739 PF01565 FAD binding domain Atu2740 PF07729 FCD domain Atu2740 PF00392 Bacterial regulatory proteins, gntR family Atu2742 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Atu2743 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu2744 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu2745 PF00501 AMP-binding enzyme Atu2745 PF13193 AMP-binding enzyme C-terminal domain Atu2745 PF16177 Acetyl-coenzyme A synthetase N-terminus Atu2747 PF01168 Alanine racemase, N-terminal domain Atu2748 PF08264 Anticodon-binding domain of tRNA Atu2748 PF13603 Leucyl-tRNA synthetase, Domain 2 Atu2748 PF00133 tRNA synthetases class I (I, L, M and V) Atu2751 PF00037 4Fe-4S binding domain Atu2751 PF11953 Domain of unknown function (DUF3470) Atu2755 PF01494 FAD binding domain Atu2757 PF00543 Nitrogen regulatory protein P-II Atu2758 PF00909 Ammonium Transporter Family Atu2759 PF09397 Ftsk gamma domain Atu2759 PF01580 FtsK/SpoIIIE family Atu2759 PF17854 FtsK alpha domain Atu2759 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Atu2760 PF03548 Outer membrane lipoprotein carrier protein LolA Atu2763 PF00072 Response regulator receiver domain Atu2763 PF00486 Transcriptional regulatory protein, C terminal Atu2765 PF02559 CarD-like/TRCF domain Atu2766 PF05088 Bacterial NAD-glutamate dehydrogenase Atu2767 PF11700 Vacuole effluxer Atg22 like Atu2768 PF05233 PHB accumulation regulatory domain Atu2768 PF07879 PHB/PHA accumulation regulator DNA-binding domain Atu2769 PF00108 Thiolase, N-terminal domain Atu2769 PF02803 Thiolase, C-terminal domain Atu2771 PF00210 Ferritin-like domain Atu2772 PF00293 NUDIX domain Atu2774 PF13180 PDZ domain Atu2774 PF03572 Peptidase family S41 Atu2776 PF02590 Predicted SPOUT methyltransferase Atu2778 PF01467 Cytidylyltransferase-like Atu2779 PF00171 Aldehyde dehydrogenase family Atu2780 PF00696 Amino acid kinase family Atu2780 PF01472 PUA domain Atu2781 PF01926 50S ribosome-binding GTPase Atu2781 PF01018 GTP1/OBG Atu2782 PF13302 Acetyltransferase (GNAT) domain Atu2784 PF01016 Ribosomal L27 protein Atu2785 PF00829 Ribosomal prokaryotic L21 protein Atu2788 PF03328 HpcH/HpaI aldolase/citrate lyase family Atu2790 PF00694 Aconitase C-terminal domain Atu2791 PF00180 Isocitrate/isopropylmalate dehydrogenase Atu2792 PF03150 Di-haem cytochrome c peroxidase Atu2793 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Atu2793 PF07685 CobB/CobQ-like glutamine amidotransferase domain Atu2794 PF14824 Sirohaem biosynthesis protein central Atu2794 PF10414 Sirohaem synthase dimerisation region Atu2794 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu2795 PF01888 CbiD Atu2796 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu2798 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu2799 PF02571 Precorrin-6x reductase CbiJ/CobK Atu2800 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu2801 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu2802 PF02570 Precorrin-8X methylmutase Atu2803 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Atu2804 PF02514 CobN/Magnesium Chelatase Atu2805 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu2805 PF07683 Cobalamin synthesis protein cobW C-terminal domain Atu2807 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP Atu2808 PF07685 CobB/CobQ-like glutamine amidotransferase domain Atu2808 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Atu2809 PF03186 CobD/Cbib protein Atu2810 PF00155 Aminotransferase class I and II Atu2811 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu2811 PF13378 Enolase C-terminal domain-like Atu2812 PF05336 L-rhamnose mutarotase Atu2813 PF01232 Mannitol dehydrogenase Rossmann domain Atu2813 PF08125 Mannitol dehydrogenase C-terminal domain Atu2814 PF08240 Alcohol dehydrogenase GroES-like domain Atu2814 PF00107 Zinc-binding dehydrogenase Atu2816 PF00248 Aldo/keto reductase family Atu2818 PF02653 Branched-chain amino acid transport system / permease component Atu2819 PF00005 ABC transporter Atu2821 PF07729 FCD domain Atu2821 PF00392 Bacterial regulatory proteins, gntR family Atu2822 PF08666 SAF domain Atu2822 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Atu2823 PF02142 MGS-like domain Atu2823 PF01808 AICARFT/IMPCHase bienzyme Atu2825 PF01029 NusB family Atu2825 PF01189 16S rRNA methyltransferase RsmB/F Atu2826 PF01435 Peptidase family M48 Atu2828 PF02195 ParB-like nuclease domain Atu2828 PF17762 HTH domain found in ParB protein Atu2829 PF13614 AAA domain Atu2830 PF02527 rRNA small subunit methyltransferase G Atu2831 PF13932 GidA associated domain Atu2831 PF01134 Glucose inhibited division protein A Atu2832 PF12631 MnmE helical domain Atu2832 PF10396 GTP-binding protein TrmE N-terminus Atu2832 PF01926 50S ribosome-binding GTPase Atu2833 PF07497 Rho termination factor, RNA-binding domain Atu2833 PF07498 Rho termination factor, N-terminal domain Atu2833 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain Atu2835 PF01208 Uroporphyrinogen decarboxylase (URO-D) Atu3009 PF01757 Acyltransferase family Atu3016 PF00300 Histidine phosphatase superfamily (branch 1) Atu3020 PF07729 FCD domain Atu3020 PF00392 Bacterial regulatory proteins, gntR family Atu3021 PF17912 MalK OB fold domain Atu3021 PF00005 ABC transporter Atu3022 PF00528 Binding-protein-dependent transport system inner membrane component Atu3023 PF00528 Binding-protein-dependent transport system inner membrane component Atu3024 PF01547 Bacterial extracellular solute-binding protein Atu3027 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu3027 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu3029 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu3029 PF13378 Enolase C-terminal domain-like Atu3034 PF00480 ROK family Atu3035 PF00196 Bacterial regulatory proteins, luxR family Atu3035 PF00072 Response regulator receiver domain Atu3036 PF00528 Binding-protein-dependent transport system inner membrane component Atu3038 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3038 PF00005 ABC transporter Atu3041 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3044 PF01112 Asparaginase Atu3046 PF01266 FAD dependent oxidoreductase Atu3047 PF00528 Binding-protein-dependent transport system inner membrane component Atu3047 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu3048 PF00528 Binding-protein-dependent transport system inner membrane component Atu3049 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3050 PF01266 FAD dependent oxidoreductase Atu3051 PF00300 Histidine phosphatase superfamily (branch 1) Atu3051 PF00106 short chain dehydrogenase Atu3053 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3053 PF00005 ABC transporter Atu3056 PF00535 Glycosyl transferase family 2 Atu3056 PF03552 Cellulose synthase Atu3056 PF07238 PilZ domain Atu3059 PF00999 Sodium/hydrogen exchanger family Atu3060 PF06472 ABC transporter transmembrane region 2 Atu3060 PF00005 ABC transporter Atu3061 PF08448 PAS fold Atu3061 PF00990 Diguanylate cyclase, GGDEF domain Atu3062 PF00356 Bacterial regulatory proteins, lacI family Atu3064 PF00005 ABC transporter Atu3065 PF02653 Branched-chain amino acid transport system / permease component Atu3066 PF02126 Phosphotriesterase family Atu3068 PF00294 pfkB family carbohydrate kinase Atu3070 PF01546 Peptidase family M20/M25/M40 Atu3070 PF07687 Peptidase dimerisation domain Atu3072 PF00668 Condensation domain Atu3072 PF00550 Phosphopantetheine attachment site Atu3072 PF13193 AMP-binding enzyme C-terminal domain Atu3072 PF00975 Thioesterase domain Atu3072 PF00501 AMP-binding enzyme Atu3073 PF01177 Asp/Glu/Hydantoin racemase Atu3075 PF00440 Bacterial regulatory proteins, tetR family Atu3076 PF00860 Permease family Atu3077 PF00144 Beta-lactamase Atu3078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3078 PF03466 LysR substrate binding domain Atu3084 PF04542 Sigma-70 region 2 Atu3084 PF08281 Sigma-70, region 4 Atu3085 PF01177 Asp/Glu/Hydantoin racemase Atu3086 PF00528 Binding-protein-dependent transport system inner membrane component Atu3087 PF00528 Binding-protein-dependent transport system inner membrane component Atu3089 PF00005 ABC transporter Atu3089 PF08402 TOBE domain Atu3094 PF08447 PAS fold Atu3094 PF13426 PAS domain Atu3094 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu3096 PF13416 Bacterial extracellular solute-binding protein Atu3097 PF00528 Binding-protein-dependent transport system inner membrane component Atu3098 PF00528 Binding-protein-dependent transport system inner membrane component Atu3099 PF00005 ABC transporter Atu3099 PF17912 MalK OB fold domain Atu3100 PF00528 Binding-protein-dependent transport system inner membrane component Atu3101 PF00528 Binding-protein-dependent transport system inner membrane component Atu3103 PF00005 ABC transporter Atu3103 PF17912 MalK OB fold domain Atu3104 PF06964 Alpha-L-arabinofuranosidase C-terminal domain Atu3107 PF00356 Bacterial regulatory proteins, lacI family Atu3109 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu3109 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu3110 PF01261 Xylose isomerase-like TIM barrel Atu3111 PF00005 ABC transporter Atu3111 PF03459 TOBE domain Atu3111 PF17912 MalK OB fold domain Atu3112 PF00528 Binding-protein-dependent transport system inner membrane component Atu3113 PF00528 Binding-protein-dependent transport system inner membrane component Atu3114 PF13416 Bacterial extracellular solute-binding protein Atu3115 PF00440 Bacterial regulatory proteins, tetR family Atu3115 PF17938 Tetracyclin repressor-like, C-terminal domain Atu3116 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3116 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3119 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3119 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3121 PF00313 'Cold-shock' DNA-binding domain Atu3123 PF01165 Ribosomal protein S21 Atu3128 PF07470 Glycosyl Hydrolase Family 88 Atu3129 PF00295 Glycosyl hydrolases family 28 Atu3132 PF00528 Binding-protein-dependent transport system inner membrane component Atu3133 PF00528 Binding-protein-dependent transport system inner membrane component Atu3134 PF12833 Helix-turn-helix domain Atu3134 PF02311 AraC-like ligand binding domain Atu3135 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu3137 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu3138 PF04909 Amidohydrolase Atu3139 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu3139 PF13378 Enolase C-terminal domain-like Atu3140 PF00701 Dihydrodipicolinate synthetase family Atu3142 PF04962 KduI/IolB family Atu3143 PF01370 NAD dependent epimerase/dehydratase family Atu3144 PF07729 FCD domain Atu3144 PF00392 Bacterial regulatory proteins, gntR family Atu3146 PF00557 Metallopeptidase family M24 Atu3146 PF01321 Creatinase/Prolidase N-terminal domain Atu3147 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3147 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3148 PF17912 MalK OB fold domain Atu3148 PF00005 ABC transporter Atu3149 PF00528 Binding-protein-dependent transport system inner membrane component Atu3150 PF00528 Binding-protein-dependent transport system inner membrane component Atu3151 PF13416 Bacterial extracellular solute-binding protein Atu3153 PF02311 AraC-like ligand binding domain Atu3153 PF12833 Helix-turn-helix domain Atu3154 PF07690 Major Facilitator Superfamily Atu3155 PF03466 LysR substrate binding domain Atu3155 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3156 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu3158 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu3159 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Atu3159 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu3162 PF00356 Bacterial regulatory proteins, lacI family Atu3163 PF16912 Glucose dehydrogenase C-terminus Atu3163 PF08240 Alcohol dehydrogenase GroES-like domain Atu3166 PF00294 pfkB family carbohydrate kinase Atu3167 PF08013 Tagatose 6 phosphate kinase Atu3168 PF00528 Binding-protein-dependent transport system inner membrane component Atu3169 PF00528 Binding-protein-dependent transport system inner membrane component Atu3170 PF00005 ABC transporter Atu3170 PF08402 TOBE domain Atu3171 PF17912 MalK OB fold domain Atu3171 PF00005 ABC transporter Atu3172 PF00528 Binding-protein-dependent transport system inner membrane component Atu3175 PF01053 Cys/Met metabolism PLP-dependent enzyme Atu3178 PF01297 Zinc-uptake complex component A periplasmic Atu3179 PF00950 ABC 3 transport family Atu3180 PF00005 ABC transporter Atu3181 PF07683 Cobalamin synthesis protein cobW C-terminal domain Atu3181 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu3184 PF07683 Cobalamin synthesis protein cobW C-terminal domain Atu3184 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu3185 PF13416 Bacterial extracellular solute-binding protein Atu3186 PF00528 Binding-protein-dependent transport system inner membrane component Atu3187 PF00528 Binding-protein-dependent transport system inner membrane component Atu3188 PF00005 ABC transporter Atu3188 PF08402 TOBE domain Atu3191 PF03922 OmpW family Atu3196 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Atu3196 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Atu3197 PF03466 LysR substrate binding domain Atu3197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3198 PF13407 Periplasmic binding protein domain Atu3199 PF02653 Branched-chain amino acid transport system / permease component Atu3200 PF00005 ABC transporter Atu3201 PF00440 Bacterial regulatory proteins, tetR family Atu3201 PF08361 MAATS-type transcriptional repressor, C-terminal region Atu3202 PF00873 AcrB/AcrD/AcrF family Atu3203 PF00529 HlyD membrane-fusion protein of T1SS Atu3203 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu3204 PF13426 PAS domain Atu3204 PF08447 PAS fold Atu3204 PF05231 MASE1 Atu3204 PF08448 PAS fold Atu3204 PF00990 Diguanylate cyclase, GGDEF domain Atu3204 PF00563 EAL domain Atu3205 PF05899 Protein of unknown function (DUF861) Atu3205 PF07883 Cupin domain Atu3207 PF00563 EAL domain Atu3207 PF08447 PAS fold Atu3207 PF00990 Diguanylate cyclase, GGDEF domain Atu3207 PF08448 PAS fold Atu3208 PF02615 Malate/L-lactate dehydrogenase Atu3210 PF09397 Ftsk gamma domain Atu3210 PF01580 FtsK/SpoIIIE family Atu3210 PF13491 4TM region of DNA translocase FtsK/SpoIIIE Atu3210 PF17854 FtsK alpha domain Atu3212 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3213 PF00528 Binding-protein-dependent transport system inner membrane component Atu3214 PF00528 Binding-protein-dependent transport system inner membrane component Atu3215 PF00005 ABC transporter Atu3215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3216 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3216 PF00005 ABC transporter Atu3217 PF00266 Aminotransferase class-V Atu3219 PF00920 Dehydratase family Atu3222 PF13407 Periplasmic binding protein domain Atu3223 PF00005 ABC transporter Atu3224 PF02653 Branched-chain amino acid transport system / permease component Atu3225 PF02653 Branched-chain amino acid transport system / permease component Atu3226 PF00392 Bacterial regulatory proteins, gntR family Atu3226 PF07729 FCD domain Atu3228 PF02811 PHP domain Atu3228 PF07733 Bacterial DNA polymerase III alpha NTPase domain Atu3228 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Atu3228 PF14579 Helix-hairpin-helix motif Atu3228 PF01336 OB-fold nucleic acid binding domain Atu3232 PF13660 Domain of unknown function (DUF4147) Atu3232 PF05161 MOFRL family Atu3234 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3234 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3236 PF03459 TOBE domain Atu3236 PF17912 MalK OB fold domain Atu3236 PF00005 ABC transporter Atu3237 PF00528 Binding-protein-dependent transport system inner membrane component Atu3238 PF00528 Binding-protein-dependent transport system inner membrane component Atu3239 PF01547 Bacterial extracellular solute-binding protein Atu3241 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3243 PF01425 Amidase Atu3244 PF00563 EAL domain Atu3244 PF08447 PAS fold Atu3244 PF08448 PAS fold Atu3244 PF00990 Diguanylate cyclase, GGDEF domain Atu3245 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu3247 PF03776 Septum formation topological specificity factor MinE Atu3248 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Atu3249 PF05209 Septum formation inhibitor MinC, N-terminal domain Atu3249 PF03775 Septum formation inhibitor MinC, C-terminal domain Atu3251 PF13419 Haloacid dehalogenase-like hydrolase Atu3252 PF07729 FCD domain Atu3252 PF00392 Bacterial regulatory proteins, gntR family Atu3253 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu3255 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu3256 PF08240 Alcohol dehydrogenase GroES-like domain Atu3256 PF00107 Zinc-binding dehydrogenase Atu3257 PF03786 D-mannonate dehydratase (UxuA) Atu3259 PF00171 Aldehyde dehydrogenase family Atu3260 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu3261 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu3262 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3262 PF00005 ABC transporter Atu3263 PF03841 L-seryl-tRNA selenium transferase Atu3266 PF01979 Amidohydrolase family Atu3267 PF00528 Binding-protein-dependent transport system inner membrane component Atu3267 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu3268 PF00528 Binding-protein-dependent transport system inner membrane component Atu3269 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3271 PF00534 Glycosyl transferases group 1 Atu3271 PF13439 Glycosyltransferase Family 4 Atu3272 PF02563 Polysaccharide biosynthesis/export protein Atu3273 PF13533 Biotin-lipoyl like Atu3274 PF00873 AcrB/AcrD/AcrF family Atu3276 PF13018 Extended Signal Peptide of Type V secretion system Atu3277 PF01613 Flavin reductase like domain Atu3278 PF00248 Aldo/keto reductase family Atu3279 PF00296 Luciferase-like monooxygenase Atu3281 PF08402 TOBE domain Atu3281 PF00005 ABC transporter Atu3282 PF01547 Bacterial extracellular solute-binding protein Atu3283 PF00528 Binding-protein-dependent transport system inner membrane component Atu3284 PF00528 Binding-protein-dependent transport system inner membrane component Atu3285 PF01055 Glycosyl hydrolases family 31 Atu3286 PF00528 Binding-protein-dependent transport system inner membrane component Atu3287 PF09084 NMT1/THI5 like Atu3288 PF02110 Hydroxyethylthiazole kinase family Atu3289 PF02581 Thiamine monophosphate synthase Atu3290 PF08543 Phosphomethylpyrimidine kinase Atu3291 PF01037 Lrp/AsnC ligand binding domain Atu3292 PF00842 Alanine racemase, C-terminal domain Atu3292 PF01168 Alanine racemase, N-terminal domain Atu3293 PF01266 FAD dependent oxidoreductase Atu3296 PF00158 Sigma-54 interaction domain Atu3296 PF02954 Bacterial regulatory protein, Fis family Atu3296 PF00072 Response regulator receiver domain Atu3297 PF00512 His Kinase A (phospho-acceptor) domain Atu3297 PF02743 Cache domain Atu3297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu3298 PF00375 Sodium:dicarboxylate symporter family Atu3299 PF00892 EamA-like transporter family Atu3300 PF00202 Aminotransferase class-III Atu3307 PF01270 Glycosyl hydrolases family 8 Atu3309 PF03552 Cellulose synthase Atu3309 PF00535 Glycosyl transferase family 2 Atu3309 PF07238 PilZ domain Atu3315 PF16363 GDP-mannose 4,6 dehydratase Atu3316 PF16363 GDP-mannose 4,6 dehydratase Atu3318 PF00072 Response regulator receiver domain Atu3318 PF00196 Bacterial regulatory proteins, luxR family Atu3322 PF00005 ABC transporter Atu3322 PF00664 ABC transporter transmembrane region Atu3323 PF00529 HlyD membrane-fusion protein of T1SS Atu3326 PF02563 Polysaccharide biosynthesis/export protein Atu3327 PF02397 Bacterial sugar transferase Atu3329 PF00202 Aminotransferase class-III Atu3330 PF00672 HAMP domain Atu3330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu3331 PF01476 LysM domain Atu3331 PF03734 L,D-transpeptidase catalytic domain Atu3331 PF17969 L,D-transpeptidase C-terminal domain Atu3335 PF02245 Methylpurine-DNA glycosylase (MPG) Atu3337 PF00356 Bacterial regulatory proteins, lacI family Atu3338 PF01547 Bacterial extracellular solute-binding protein Atu3339 PF00528 Binding-protein-dependent transport system inner membrane component Atu3340 PF00528 Binding-protein-dependent transport system inner membrane component Atu3341 PF00005 ABC transporter Atu3341 PF17912 MalK OB fold domain Atu3341 PF03459 TOBE domain Atu3343 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3343 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3344 PF04055 Radical SAM superfamily Atu3345 PF01242 6-pyruvoyl tetrahydropterin synthase Atu3346 PF06508 Queuosine biosynthesis protein QueC Atu3347 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3347 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3349 PF17912 MalK OB fold domain Atu3349 PF00005 ABC transporter Atu3350 PF00528 Binding-protein-dependent transport system inner membrane component Atu3352 PF01547 Bacterial extracellular solute-binding protein Atu3353 PF01050 Mannose-6-phosphate isomerase Atu3353 PF00483 Nucleotidyl transferase Atu3354 PF01011 PQQ enzyme repeat Atu3355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3355 PF03466 LysR substrate binding domain Atu3356 PF01515 Phosphate acetyl/butaryl transferase Atu3356 PF03949 Malic enzyme, NAD binding domain Atu3356 PF00390 Malic enzyme, N-terminal domain Atu3357 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu3358 PF00528 Binding-protein-dependent transport system inner membrane component Atu3359 PF00528 Binding-protein-dependent transport system inner membrane component Atu3360 PF00005 ABC transporter Atu3361 PF03972 MmgE/PrpD family Atu3363 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu3363 PF08447 PAS fold Atu3363 PF13426 PAS domain Atu3364 PF01266 FAD dependent oxidoreductase Atu3366 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Atu3367 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu3368 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu3369 PF07722 Peptidase C26 Atu3370 PF02653 Branched-chain amino acid transport system / permease component Atu3371 PF00005 ABC transporter Atu3372 PF13407 Periplasmic binding protein domain Atu3374 PF01546 Peptidase family M20/M25/M40 Atu3375 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3377 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3377 PF00005 ABC transporter Atu3379 PF00528 Binding-protein-dependent transport system inner membrane component Atu3381 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3381 PF03466 LysR substrate binding domain Atu3382 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu3382 PF00529 HlyD membrane-fusion protein of T1SS Atu3383 PF00664 ABC transporter transmembrane region Atu3383 PF00005 ABC transporter Atu3387 PF04542 Sigma-70 region 2 Atu3387 PF08281 Sigma-70, region 4 Atu3387 PF12680 SnoaL-like domain Atu3388 PF00005 ABC transporter Atu3389 PF01032 FecCD transport family Atu3392 PF01209 ubiE/COQ5 methyltransferase family Atu3393 PF00127 Copper binding proteins, plastocyanin/azurin family Atu3394 PF00005 ABC transporter Atu3395 PF01032 FecCD transport family Atu3398 PF07687 Peptidase dimerisation domain Atu3398 PF01546 Peptidase family M20/M25/M40 Atu3399 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu3401 PF00171 Aldehyde dehydrogenase family Atu3402 PF00180 Isocitrate/isopropylmalate dehydrogenase Atu3403 PF00171 Aldehyde dehydrogenase family Atu3404 PF01266 FAD dependent oxidoreductase Atu3407 PF00202 Aminotransferase class-III Atu3409 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3410 PF00528 Binding-protein-dependent transport system inner membrane component Atu3411 PF00528 Binding-protein-dependent transport system inner membrane component Atu3411 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu3412 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3412 PF00005 ABC transporter Atu3413 PF01037 Lrp/AsnC ligand binding domain Atu3414 PF01266 FAD dependent oxidoreductase Atu3417 PF00005 ABC transporter Atu3419 PF01546 Peptidase family M20/M25/M40 Atu3419 PF07687 Peptidase dimerisation domain Atu3420 PF00296 Luciferase-like monooxygenase Atu3421 PF00296 Luciferase-like monooxygenase Atu3423 PF02082 Transcriptional regulator Atu3425 PF01613 Flavin reductase like domain Atu3426 PF00296 Luciferase-like monooxygenase Atu3430 PF00296 Luciferase-like monooxygenase Atu3431 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu3431 PF02770 Acyl-CoA dehydrogenase, middle domain Atu3431 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu3433 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3434 PF00528 Binding-protein-dependent transport system inner membrane component Atu3435 PF00528 Binding-protein-dependent transport system inner membrane component Atu3436 PF00005 ABC transporter Atu3436 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3437 PF00005 ABC transporter Atu3437 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3438 PF00248 Aldo/keto reductase family Atu3439 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu3439 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Atu3440 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3440 PF03466 LysR substrate binding domain Atu3444 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3445 PF07687 Peptidase dimerisation domain Atu3445 PF01546 Peptidase family M20/M25/M40 Atu3446 PF00296 Luciferase-like monooxygenase Atu3447 PF05368 NmrA-like family Atu3451 PF00296 Luciferase-like monooxygenase Atu3453 PF13378 Enolase C-terminal domain-like Atu3453 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu3455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu3456 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3456 PF00005 ABC transporter Atu3457 PF00005 ABC transporter Atu3457 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu3458 PF00528 Binding-protein-dependent transport system inner membrane component Atu3458 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu3459 PF00528 Binding-protein-dependent transport system inner membrane component Atu3461 PF07729 FCD domain Atu3461 PF00392 Bacterial regulatory proteins, gntR family Atu3463 PF00561 alpha/beta hydrolase fold Atu3465 PF00753 Metallo-beta-lactamase superfamily Atu3465 PF04273 Putative phosphatase (DUF442) Atu3467 PF04143 Sulphur transport Atu3469 PF01676 Metalloenzyme superfamily Atu3469 PF06415 BPG-independent PGAM N-terminus (iPGM_N) Atu3471 PF02817 e3 binding domain Atu3471 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Atu3471 PF00364 Biotin-requiring enzyme Atu3472 PF02780 Transketolase, C-terminal domain Atu3472 PF02779 Transketolase, pyrimidine binding domain Atu3473 PF00676 Dehydrogenase E1 component Atu3473 PF12573 2-oxoisovalerate dehydrogenase E1 alpha subunit N terminal Atu3474 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu3474 PF02770 Acyl-CoA dehydrogenase, middle domain Atu3474 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu3475 PF02803 Thiolase, C-terminal domain Atu3475 PF00108 Thiolase, N-terminal domain Atu3476 PF01037 Lrp/AsnC ligand binding domain Atu3477 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu3477 PF02770 Acyl-CoA dehydrogenase, middle domain Atu3477 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu3478 PF01039 Carboxyl transferase domain Atu3479 PF00289 Biotin carboxylase, N-terminal domain Atu3479 PF00364 Biotin-requiring enzyme Atu3479 PF02785 Biotin carboxylase C-terminal domain Atu3479 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu3480 PF00682 HMGL-like Atu3481 PF00378 Enoyl-CoA hydratase/isomerase Atu3482 PF02569 Pantoate-beta-alanine ligase Atu3483 PF02548 Ketopantoate hydroxymethyltransferase Atu3484 PF01261 Xylose isomerase-like TIM barrel Atu3485 PF00596 Class II Aldolase and Adducin N-terminal domain Atu3486 PF08220 DeoR-like helix-turn-helix domain Atu3486 PF00455 DeoR C terminal sensor domain Atu3487 PF13407 Periplasmic binding protein domain Atu3488 PF00005 ABC transporter Atu3489 PF02653 Branched-chain amino acid transport system / permease component Atu3490 PF02653 Branched-chain amino acid transport system / permease component Atu3491 PF05336 L-rhamnose mutarotase Atu3493 PF00561 alpha/beta hydrolase fold Atu3495 PF00990 Diguanylate cyclase, GGDEF domain Atu3495 PF08447 PAS fold Atu3495 PF00563 EAL domain Atu3495 PF08448 PAS fold Atu3498 PF00171 Aldehyde dehydrogenase family Atu3500 PF08713 DNA alkylation repair enzyme Atu3501 PF00005 ABC transporter Atu3502 PF00528 Binding-protein-dependent transport system inner membrane component Atu3503 PF00528 Binding-protein-dependent transport system inner membrane component Atu3508 PF08241 Methyltransferase domain Atu3510 PF00795 Carbon-nitrogen hydrolase Atu3511 PF00462 Glutaredoxin Atu3513 PF08241 Methyltransferase domain Atu3516 PF00293 NUDIX domain Atu3517 PF00583 Acetyltransferase (GNAT) family Atu3517 PF13508 Acetyltransferase (GNAT) domain Atu3518 PF01960 ArgJ family Atu3520 PF07516 SecA Wing and Scaffold domain Atu3520 PF07517 SecA DEAD-like domain Atu3520 PF01043 SecA preprotein cross-linking domain Atu3520 PF02810 SEC-C motif Atu3521 PF00892 EamA-like transporter family Atu3522 PF01757 Acyltransferase family Atu3528 PF00248 Aldo/keto reductase family Atu3529 PF03786 D-mannonate dehydratase (UxuA) Atu3530 PF01232 Mannitol dehydrogenase Rossmann domain Atu3530 PF08125 Mannitol dehydrogenase C-terminal domain Atu3531 PF00106 short chain dehydrogenase Atu3532 PF07729 FCD domain Atu3532 PF00392 Bacterial regulatory proteins, gntR family Atu3534 PF02653 Branched-chain amino acid transport system / permease component Atu3535 PF02653 Branched-chain amino acid transport system / permease component Atu3536 PF00005 ABC transporter Atu3542 PF00149 Calcineurin-like phosphoesterase Atu3543 PF02734 DAK2 domain Atu3543 PF02733 Dak1 domain Atu3544 PF02080 TrkA-C domain Atu3544 PF03600 Citrate transporter Atu3548 PF13439 Glycosyltransferase Family 4 Atu3550 PF01943 Polysaccharide biosynthesis protein Atu3551 PF13579 Glycosyl transferase 4-like domain Atu3551 PF00534 Glycosyl transferases group 1 Atu3556 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Atu3556 PF13807 G-rich domain on putative tyrosine kinase Atu3556 PF02706 Chain length determinant protein Atu3559 PF00534 Glycosyl transferases group 1 Atu3559 PF13439 Glycosyltransferase Family 4 Atu3560 PF13439 Glycosyltransferase Family 4 Atu3560 PF00534 Glycosyl transferases group 1 Atu3563 PF03449 Transcription elongation factor, N-terminal Atu3563 PF01272 Transcription elongation factor, GreA/GreB, C-term Atu3564 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Atu3564 PF00722 Glycosyl hydrolases family 16 Atu3570 PF02624 YcaO cyclodehydratase, ATP-ad Mg2+-binding Atu3572 PF01381 Helix-turn-helix Atu3574 PF00005 ABC transporter Atu3575 PF02653 Branched-chain amino acid transport system / permease component Atu3576 PF13407 Periplasmic binding protein domain Atu3578 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Atu3578 PF01266 FAD dependent oxidoreductase Atu3581 PF00364 Biotin-requiring enzyme Atu3581 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu3581 PF00289 Biotin carboxylase, N-terminal domain Atu3581 PF02785 Biotin carboxylase C-terminal domain Atu3583 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family Atu3585 PF02798 Glutathione S-transferase, N-terminal domain Atu3586 PF01039 Carboxyl transferase domain Atu3587 PF06114 IrrE N-terminal-like domain Atu3587 PF09856 Predicted transcriptional regulator (DUF2083) Atu3587 PF01381 Helix-turn-helix Atu3588 PF02805 Metal binding domain of Ada Atu3588 PF06029 AlkA N-terminal domain Atu3588 PF00730 HhH-GPD superfamily base excision DNA repair protein Atu3588 PF12833 Helix-turn-helix domain Atu3589 PF00749 tRNA synthetases class I (E and Q), catalytic domain Atu3591 PF00106 short chain dehydrogenase Atu3593 PF01923 Cobalamin adenosyltransferase Atu3595 PF01012 Electron transfer flavoprotein domain Atu3596 PF00766 Electron transfer flavoprotein FAD-binding domain Atu3596 PF01012 Electron transfer flavoprotein domain Atu3597 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Atu3597 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Atu3598 PF08534 Redoxin Atu3599 PF14698 Argininosuccinate lyase C-terminal Atu3599 PF00206 Lyase Atu3601 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain Atu3601 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Atu3603 PF00072 Response regulator receiver domain Atu3604 PF00156 Phosphoribosyl transferase domain Atu3606 PF00005 ABC transporter Atu3610 PF04752 ChaC-like protein Atu3611 PF02153 Prephenate dehydrogenase Atu3612 PF00155 Aminotransferase class I and II Atu3613 PF01209 ubiE/COQ5 methyltransferase family Atu3614 PF00753 Metallo-beta-lactamase superfamily Atu3614 PF16123 Hydroxyacylglutathione hydrolase C-terminus Atu3617 PF00830 Ribosomal L28 family Atu3618 PF02592 Putative vitamin uptake transporter Atu3621 PF11775 Cobalamin biosynthesis protein CobT VWA domain Atu3621 PF06213 Cobalamin biosynthesis protein CobT Atu3622 PF07728 AAA domain (dynein-related subfamily) Atu3622 PF08406 CbbQ/NirQ/NorQ C-terminal Atu3622 PF12556 Cobaltochelatase CobS subunit N terminal Atu3623 PF00226 DnaJ domain Atu3624 PF01722 BolA-like protein Atu3625 PF01761 3-dehydroquinate synthase Atu3626 PF01202 Shikimate kinase Atu3629 PF02899 Phage integrase, N-terminal SAM-like domain Atu3629 PF00589 Phage integrase family Atu3630 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit Atu3631 PF03734 L,D-transpeptidase catalytic domain Atu3632 PF01206 Sulfurtransferase TusA Atu3632 PF00581 Rhodanese-like domain Atu3633 PF07683 Cobalamin synthesis protein cobW C-terminal domain Atu3633 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu3634 PF07943 Penicillin-binding protein 5, C-terminal domain Atu3634 PF00768 D-alanyl-D-alanine carboxypeptidase Atu3635 PF01546 Peptidase family M20/M25/M40 Atu3635 PF07687 Peptidase dimerisation domain Atu3637 PF01165 Ribosomal protein S21 Atu3642 PF04717 Type VI secretion system, phage-baseplate injector Atu3651 PF06500 Alpha/beta hydrolase of unknown function (DUF1100) Atu3656 PF00583 Acetyltransferase (GNAT) family Atu3664 PF00561 alpha/beta hydrolase fold Atu3665 PF00106 short chain dehydrogenase Atu3666 PF02082 Transcriptional regulator Atu3667 PF02261 Aspartate decarboxylase Atu3670 PF00550 Phosphopantetheine attachment site Atu3670 PF13193 AMP-binding enzyme C-terminal domain Atu3670 PF00501 AMP-binding enzyme Atu3670 PF00668 Condensation domain Atu3672 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu3672 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu3672 PF16197 Ketoacyl-synthetase C-terminal extension Atu3672 PF00668 Condensation domain Atu3672 PF00698 Acyl transferase domain Atu3672 PF00550 Phosphopantetheine attachment site Atu3673 PF00501 AMP-binding enzyme Atu3675 PF13193 AMP-binding enzyme C-terminal domain Atu3675 PF00550 Phosphopantetheine attachment site Atu3675 PF00501 AMP-binding enzyme Atu3675 PF00668 Condensation domain Atu3676 PF13649 Methyltransferase domain Atu3677 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu3677 PF00550 Phosphopantetheine attachment site Atu3677 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu3677 PF16197 Ketoacyl-synthetase C-terminal extension Atu3677 PF00202 Aminotransferase class-III Atu3677 PF00501 AMP-binding enzyme Atu3677 PF00668 Condensation domain Atu3677 PF13193 AMP-binding enzyme C-terminal domain Atu3681 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu3681 PF16197 Ketoacyl-synthetase C-terminal extension Atu3681 PF00668 Condensation domain Atu3681 PF00550 Phosphopantetheine attachment site Atu3681 PF00698 Acyl transferase domain Atu3681 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu3682 PF00550 Phosphopantetheine attachment site Atu3682 PF00501 AMP-binding enzyme Atu3682 PF00668 Condensation domain Atu3682 PF13193 AMP-binding enzyme C-terminal domain Atu3683 PF00501 AMP-binding enzyme Atu3683 PF13193 AMP-binding enzyme C-terminal domain Atu3683 PF00668 Condensation domain Atu3683 PF00550 Phosphopantetheine attachment site Atu3684 PF13193 AMP-binding enzyme C-terminal domain Atu3684 PF07993 Male sterility protein Atu3684 PF00668 Condensation domain Atu3684 PF07993 Male sterility protein Atu3684 PF00550 Phosphopantetheine attachment site Atu3684 PF00668 Condensation domain Atu3684 PF13193 AMP-binding enzyme C-terminal domain Atu3684 PF00501 AMP-binding enzyme Atu3684 PF00501 AMP-binding enzyme Atu3684 PF00550 Phosphopantetheine attachment site Atu3687 PF07715 TonB-dependent Receptor Plug Domain Atu3688 PF01497 Periplasmic binding protein Atu3689 PF01032 FecCD transport family Atu3690 PF01032 FecCD transport family Atu3691 PF00005 ABC transporter Atu3694 PF06832 Penicillin-Binding Protein C-terminus Family Atu3694 PF00912 Transglycosylase Atu3694 PF00905 Penicillin binding protein transpeptidase domain Atu3695 PF11974 Bacterial alpha-2-macroglobulin MG3 domain Atu3695 PF01835 MG2 domain Atu3695 PF00207 Alpha-2-macroglobulin family Atu3695 PF07703 Alpha-2-macroglobulin bait region domain Atu3695 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain Atu3695 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain Atu3695 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain Atu3695 PF17962 Bacterial macroglobulin domain 6 Atu3695 PF07678 A-macroglobulin TED domain Atu3696 PF03966 Trm112p-like protein Atu3698 PF00085 Thioredoxin Atu3701 PF02798 Glutathione S-transferase, N-terminal domain Atu3706 PF01842 ACT domain Atu3706 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu3706 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu3708 PF13505 Outer membrane protein beta-barrel domain Atu3709 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Atu3709 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Atu3709 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Atu3709 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Atu3710 PF06480 FtsH Extracellular Atu3710 PF01434 Peptidase family M41 Atu3710 PF17862 AAA+ lid domain Atu3710 PF00004 ATPase family associated with various cellular activities (AAA) Atu3711 PF01171 PP-loop family Atu3713 PF00691 OmpA family Atu3714 PF07676 WD40-like Beta Propeller Repeat Atu3714 PF04052 TolB amino-terminal domain Atu3716 PF02472 Biopolymer transport protein ExbD/TolR Atu3717 PF01618 MotA/TolQ/ExbB proton channel family Atu3718 PF03061 Thioesterase superfamily Atu3719 PF00293 NUDIX domain Atu3722 PF05491 RuvB C-terminal winged helix domain Atu3722 PF17864 RuvB AAA lid domain Atu3722 PF05496 Holliday junction DNA helicase RuvB P-loop domain Atu3723 PF07499 RuvA, C-terminal domain Atu3723 PF01330 RuvA N terminal domain Atu3724 PF02075 Crossover junction endodeoxyribonuclease RuvC Atu3725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu3725 PF00672 HAMP domain Atu3725 PF02203 Tar ligand binding domain homologue Atu3726 PF00296 Luciferase-like monooxygenase Atu3727 PF01709 Transcriptional regulator Atu3730 PF13277 YmdB-like protein Atu3732 PF01595 Cyclin M transmembrane N-terminal domain Atu3732 PF00571 CBS domain Atu3732 PF03471 Transporter associated domain Atu3736 PF02780 Transketolase, C-terminal domain Atu3736 PF00456 Transketolase, thiamine diphosphate binding domain Atu3736 PF02779 Transketolase, pyrimidine binding domain Atu3737 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain Atu3737 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Atu3738 PF00999 Sodium/hydrogen exchanger family Atu3738 PF03471 Transporter associated domain Atu3738 PF02080 TrkA-C domain Atu3739 PF00162 Phosphoglycerate kinase Atu3740 PF00274 Fructose-bisphosphate aldolase class-I Atu3743 PF01197 Ribosomal protein L31 Atu3744 PF00005 ABC transporter Atu3744 PF00664 ABC transporter transmembrane region Atu3745 PF00890 FAD binding domain Atu3746 PF00691 OmpA family Atu3746 PF01389 OmpA-like transmembrane domain Atu3748 PF00459 Inositol monophosphatase family Atu3754 PF00731 AIR carboxylase Atu3755 PF02222 ATP-grasp domain Atu3755 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain Atu3758 PF10073 Uncharacterized protein conserved in bacteria (DUF2312) Atu3762 PF02887 Pyruvate kinase, alpha/beta domain Atu3762 PF00224 Pyruvate kinase, barrel domain Atu3763 PF05951 Bacterial protein of unknown function (DUF882) Atu3764 PF00158 Sigma-54 interaction domain Atu3764 PF02954 Bacterial regulatory protein, Fis family Atu3764 PF00072 Response regulator receiver domain Atu3765 PF08439 Oligopeptidase F Atu3765 PF01432 Peptidase family M3 Atu3766 PF01063 Amino-transferase class IV Atu3767 PF00990 Diguanylate cyclase, GGDEF domain Atu3767 PF17151 Periplasmic sensor domain Atu3768 PF16653 Saccharopine dehydrogenase C-terminal domain Atu3768 PF03435 Saccharopine dehydrogenase NADP binding domain Atu3770 PF00149 Calcineurin-like phosphoesterase Atu3770 PF02872 5'-nucleotidase, C-terminal domain Atu3771 PF00762 Ferrochelatase Atu3772 PF01145 SPFH domain / Band 7 family Atu3772 PF16200 C-terminal region of band_7 Atu3774 PF00571 CBS domain Atu3774 PF01380 SIS domain Atu3778 PF00483 Nucleotidyl transferase Atu3779 PF13406 Transglycosylase SLT domain Atu3781 PF00072 Response regulator receiver domain Atu3781 PF00486 Transcriptional regulatory protein, C terminal Atu3782 PF00672 HAMP domain Atu3782 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu3782 PF00512 His Kinase A (phospho-acceptor) domain Atu3783 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu3783 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster Atu3784 PF01493 GXGXG motif Atu3784 PF01645 Conserved region in glutamate synthase Atu3784 PF04898 Glutamate synthase central domain Atu3784 PF00310 Glutamine amidotransferases class-II Atu3785 PF01212 Beta-eliminating lyase Atu3786 PF00072 Response regulator receiver domain Atu3786 PF00486 Transcriptional regulatory protein, C terminal Atu3787 PF13492 GAF domain Atu3787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu3787 PF13493 Domain of unknown function (DUF4118) Atu3787 PF02702 Osmosensitive K+ channel His kinase sensor domain Atu3787 PF00512 His Kinase A (phospho-acceptor) domain Atu3788 PF02669 K+-transporting ATPase, c chain Atu3790 PF03814 Potassium-transporting ATPase A subunit Atu3791 PF00710 Asparaginase, N-terminal Atu3791 PF17763 Glutaminase/Asparaginase C-terminal domain Atu3792 PF00324 Amino acid permease Atu3793 PF10415 Fumarase C C-terminus Atu3793 PF00206 Lyase Atu3794 PF07729 FCD domain Atu3794 PF00392 Bacterial regulatory proteins, gntR family Atu3795 PF00873 AcrB/AcrD/AcrF family Atu3797 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu3797 PF00529 HlyD membrane-fusion protein of T1SS Atu3799 PF07702 UTRA domain Atu3799 PF00392 Bacterial regulatory proteins, gntR family Atu3801 PF00528 Binding-protein-dependent transport system inner membrane component Atu3802 PF00571 CBS domain Atu3802 PF00005 ABC transporter Atu3803 PF00221 Aromatic amino acid lyase Atu3804 PF07690 Major Facilitator Superfamily Atu3806 PF01053 Cys/Met metabolism PLP-dependent enzyme Atu3807 PF01037 Lrp/AsnC ligand binding domain Atu3808 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3808 PF03466 LysR substrate binding domain Atu3809 PF00248 Aldo/keto reductase family Atu3810 PF03466 LysR substrate binding domain Atu3810 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3811 PF00857 Isochorismatase family Atu3814 PF05336 L-rhamnose mutarotase Atu3815 PF07729 FCD domain Atu3815 PF00392 Bacterial regulatory proteins, gntR family Atu3816 PF00248 Aldo/keto reductase family Atu3817 PF08666 SAF domain Atu3817 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus Atu3818 PF00005 ABC transporter Atu3819 PF02653 Branched-chain amino acid transport system / permease component Atu3820 PF02653 Branched-chain amino acid transport system / permease component Atu3821 PF13407 Periplasmic binding protein domain Atu3823 PF01717 Cobalamin-independent synthase, Catalytic domain Atu3823 PF08267 Cobalamin-independent synthase, N-terminal domain Atu3827 PF03466 LysR substrate binding domain Atu3827 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3829 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3829 PF03466 LysR substrate binding domain Atu3861 PF03061 Thioesterase superfamily Atu3866 PF04168 A predicted alpha-helical domain with a conserved ER motif. Atu3866 PF14403 Circularly permuted ATP-grasp type 2 Atu3867 PF01841 Transglutaminase-like superfamily Atu3867 PF08379 Bacterial transglutaminase-like N-terminal region Atu3869 PF00005 ABC transporter Atu3869 PF12848 ABC transporter Atu3870 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu3870 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu3871 PF01070 FMN-dependent dehydrogenase Atu3873 PF01047 MarR family Atu3874 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu3874 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu3875 PF01791 DeoC/LacD family aldolase Atu3876 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Atu3876 PF01266 FAD dependent oxidoreductase Atu3877 PF00248 Aldo/keto reductase family Atu3879 PF02653 Branched-chain amino acid transport system / permease component Atu3880 PF00005 ABC transporter Atu3883 PF00072 Response regulator receiver domain Atu3885 PF00459 Inositol monophosphatase family Atu3887 PF00011 Hsp20/alpha crystallin family Atu3888 PF13593 SBF-like CPA transporter family (DUF4137) Atu3889 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3889 PF03466 LysR substrate binding domain Atu3890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu3890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu3893 PF00528 Binding-protein-dependent transport system inner membrane component Atu3894 PF00528 Binding-protein-dependent transport system inner membrane component Atu3895 PF17912 MalK OB fold domain Atu3895 PF00005 ABC transporter Atu3896 PF03459 TOBE domain Atu3896 PF00005 ABC transporter Atu3896 PF17912 MalK OB fold domain Atu3897 PF01266 FAD dependent oxidoreductase Atu3897 PF16901 C-terminal domain of alpha-glycerophosphate oxidase Atu3898 PF00455 DeoR C terminal sensor domain Atu3898 PF08220 DeoR-like helix-turn-helix domain Atu3899 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases Atu3899 PF14824 Sirohaem biosynthesis protein central Atu3899 PF10414 Sirohaem synthase dimerisation region Atu3900 PF00384 Molybdopterin oxidoreductase Atu3900 PF04324 BFD-like [2Fe-2S] binding domain Atu3900 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Atu3900 PF01568 Molydopterin dinucleotide binding domain Atu3902 PF01077 Nitrite and sulphite reductase 4Fe-4S domain Atu3902 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain Atu3902 PF18267 Rubredoxin NAD+ reductase C-terminal domain Atu3902 PF04324 BFD-like [2Fe-2S] binding domain Atu3902 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu3903 PF00005 ABC transporter Atu3904 PF00528 Binding-protein-dependent transport system inner membrane component Atu3907 PF08376 Nitrate and nitrite sensing Atu3907 PF03861 ANTAR domain Atu3908 PF00392 Bacterial regulatory proteins, gntR family Atu3908 PF07729 FCD domain Atu3909 PF01566 Natural resistance-associated macrophage protein Atu3910 PF03746 LamB/YcsF family Atu3911 PF07286 Protein of unknown function (DUF1445) Atu3912 PF02626 Carboxyltransferase domain, subdomain A and B Atu3913 PF02785 Biotin carboxylase C-terminal domain Atu3913 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu3913 PF00364 Biotin-requiring enzyme Atu3913 PF00289 Biotin carboxylase, N-terminal domain Atu3914 PF00128 Alpha amylase, catalytic domain Atu3914 PF02806 Alpha amylase, C-terminal all-beta domain Atu3915 PF09278 MerR, DNA binding Atu3915 PF00376 MerR family regulatory protein Atu3916 PF07715 TonB-dependent Receptor Plug Domain Atu3916 PF00593 TonB dependent receptor Atu3917 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3917 PF03466 LysR substrate binding domain Atu3918 PF06772 Bacterial low temperature requirement A protein (LtrA) Atu3922 PF03428 Replication protein C N-terminal domain Atu3922 PF11800 Replication protein C C-terminal region Atu3923 PF07506 RepB plasmid partitioning protein Atu3923 PF02195 ParB-like nuclease domain Atu3924 PF13614 AAA domain Atu3926 PF01042 Endoribonuclease L-PSP Atu3927 PF01168 Alanine racemase, N-terminal domain Atu3927 PF14031 Putative serine dehydratase domain Atu3928 PF07171 MlrC C-terminus Atu3928 PF07364 Metallopeptidase family M81 Atu3929 PF05962 HutD Atu3931 PF17392 Urocanase C-terminal domain Atu3931 PF17391 Urocanase N-terminal domain Atu3931 PF01175 Urocanase Rossmann-like domain Atu3933 PF00221 Aromatic amino acid lyase Atu3934 PF01979 Amidohydrolase family Atu3935 PF01979 Amidohydrolase family Atu3947 PF01266 FAD dependent oxidoreductase Atu3948 PF14031 Putative serine dehydratase domain Atu3948 PF01168 Alanine racemase, N-terminal domain Atu3949 PF02423 Ornithine cyclodeaminase/mu-crystallin family Atu3950 PF00171 Aldehyde dehydrogenase family Atu3951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3951 PF03466 LysR substrate binding domain Atu3952 PF01266 FAD dependent oxidoreductase Atu3953 PF05544 Proline racemase Atu3954 PF00528 Binding-protein-dependent transport system inner membrane component Atu3955 PF00528 Binding-protein-dependent transport system inner membrane component Atu3956 PF00571 CBS domain Atu3956 PF00005 ABC transporter Atu3958 PF01266 FAD dependent oxidoreductase Atu3959 PF00171 Aldehyde dehydrogenase family Atu3960 PF00701 Dihydrodipicolinate synthetase family Atu3963 PF07729 FCD domain Atu3963 PF00392 Bacterial regulatory proteins, gntR family Atu3964 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3964 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3965 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3965 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3966 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu3966 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu3968 PF00528 Binding-protein-dependent transport system inner membrane component Atu3969 PF00528 Binding-protein-dependent transport system inner membrane component Atu3970 PF00005 ABC transporter Atu3970 PF17912 MalK OB fold domain Atu3970 PF03459 TOBE domain Atu3971 PF00920 Dehydratase family Atu3972 PF01370 NAD dependent epimerase/dehydratase family Atu3973 PF03737 Aldolase/RraA Atu3975 PF03275 UDP-galactopyranose mutase Atu3978 PF03466 LysR substrate binding domain Atu3978 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3979 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu3982 PF07969 Amidohydrolase family Atu3984 PF05977 Transmembrane secretion effector Atu3987 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu3987 PF03466 LysR substrate binding domain Atu3988 PF07690 Major Facilitator Superfamily Atu3996 PF13673 Acetyltransferase (GNAT) domain Atu3997 PF04055 Radical SAM superfamily Atu3997 PF06968 Biotin and Thiamin Synthesis associated domain Atu3998 PF00155 Aminotransferase class I and II Atu4000 PF00202 Aminotransferase class-III Atu4001 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III Atu4001 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal Atu4007 PF00491 Arginase family Atu4009 PF13333 Integrase core domain Atu4009 PF00665 Integrase core domain Atu4009 PF01527 Transposase Atu4009 PF13276 HTH-like domain Atu4011 PF00892 EamA-like transporter family Atu4012 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu4012 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu4013 PF00211 Adenylate and Guanylate cyclase catalytic domain Atu4015 PF11972 HTH DNA binding domain Atu4015 PF07756 Protein of unknown function (DUF1612) Atu4017 PF00083 Sugar (and other) transporter Atu4018 PF00512 His Kinase A (phospho-acceptor) domain Atu4018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4019 PF00072 Response regulator receiver domain Atu4019 PF00486 Transcriptional regulatory protein, C terminal Atu4020 PF00884 Sulfatase Atu4020 PF08019 Phosphoethanolamine transferase EptA/EptB Atu4021 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4021 PF03466 LysR substrate binding domain Atu4022 PF00593 TonB dependent receptor Atu4022 PF07715 TonB-dependent Receptor Plug Domain Atu4024 PF01032 FecCD transport family Atu4025 PF00005 ABC transporter Atu4027 PF00034 Cytochrome c Atu4028 PF02631 RecX family Atu4029 PF08450 SMP-30/Gluconolactonase/LRE-like region Atu4031 PF02653 Branched-chain amino acid transport system / permease component Atu4032 PF00005 ABC transporter Atu4033 PF13407 Periplasmic binding protein domain Atu4034 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4034 PF07730 Histidine kinase Atu4035 PF00196 Bacterial regulatory proteins, luxR family Atu4035 PF00072 Response regulator receiver domain Atu4037 PF07995 Glucose / Sorbosone dehydrogenase Atu4040 PF04445 Putative SAM-dependent methyltransferase Atu4041 PF00849 RNA pseudouridylate synthase Atu4042 PF01205 Uncharacterized protein family UPF0029 Atu4043 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Atu4043 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu4044 PF00005 ABC transporter Atu4044 PF00571 CBS domain Atu4045 PF00528 Binding-protein-dependent transport system inner membrane component Atu4047 PF00072 Response regulator receiver domain Atu4047 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4047 PF13426 PAS domain Atu4048 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu4049 PF13807 G-rich domain on putative tyrosine kinase Atu4049 PF02706 Chain length determinant protein Atu4049 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain Atu4050 PF00483 Nucleotidyl transferase Atu4051 PF00535 Glycosyl transferase family 2 Atu4052 PF00535 Glycosyl transferase family 2 Atu4053 PF00535 Glycosyl transferase family 2 Atu4055 PF00722 Glycosyl hydrolases family 16 Atu4056 PF01757 Acyltransferase family Atu4057 PF01943 Polysaccharide biosynthesis protein Atu4058 PF00535 Glycosyl transferase family 2 Atu4059 PF04230 Polysaccharide pyruvyl transferase Atu4060 PF00535 Glycosyl transferase family 2 Atu4061 PF11089 Exopolysaccharide production repressor Atu4064 PF01165 Ribosomal protein S21 Atu4066 PF01266 FAD dependent oxidoreductase Atu4069 PF01571 Aminomethyltransferase folate-binding domain Atu4069 PF08669 Glycine cleavage T-protein C-terminal barrel domain Atu4069 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu4069 PF17806 Sarcosine oxidase A3 domain Atu4072 PF01575 MaoC like domain Atu4073 PF18390 Glycogen debranching enzyme C-terminal domain Atu4073 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Atu4073 PF00128 Alpha amylase, catalytic domain Atu4074 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain Atu4074 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II Atu4074 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I Atu4074 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III Atu4075 PF08323 Starch synthase catalytic domain Atu4075 PF00534 Glycosyl transferases group 1 Atu4076 PF00483 Nucleotidyl transferase Atu4077 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Atu4077 PF00128 Alpha amylase, catalytic domain Atu4077 PF02806 Alpha amylase, C-terminal all-beta domain Atu4078 PF00343 Carbohydrate phosphorylase Atu4081 PF01177 Asp/Glu/Hydantoin racemase Atu4082 PF01037 Lrp/AsnC ligand binding domain Atu4085 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu4085 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Atu4087 PF08240 Alcohol dehydrogenase GroES-like domain Atu4087 PF00107 Zinc-binding dehydrogenase Atu4089 PF00005 ABC transporter Atu4089 PF00664 ABC transporter transmembrane region Atu4090 PF00664 ABC transporter transmembrane region Atu4090 PF00005 ABC transporter Atu4091 PF01654 Cytochrome bd terminal oxidase subunit I Atu4092 PF02322 Cytochrome bd terminal oxidase subunit II Atu4096 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain Atu4096 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain Atu4097 PF02910 Fumarate reductase flavoprotein C-term Atu4097 PF00890 FAD binding domain Atu4098 PF02445 Quinolinate synthetase A protein Atu4103 PF02224 Cytidylate kinase Atu4104 PF00575 S1 RNA binding domain Atu4110 PF00106 short chain dehydrogenase Atu4112 PF00557 Metallopeptidase family M24 Atu4112 PF01321 Creatinase/Prolidase N-terminal domain Atu4113 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4114 PF00528 Binding-protein-dependent transport system inner membrane component Atu4115 PF00528 Binding-protein-dependent transport system inner membrane component Atu4115 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4116 PF00005 ABC transporter Atu4116 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4117 PF00005 ABC transporter Atu4117 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4118 PF07729 FCD domain Atu4118 PF00392 Bacterial regulatory proteins, gntR family Atu4120 PF13378 Enolase C-terminal domain-like Atu4120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu4121 PF00296 Luciferase-like monooxygenase Atu4124 PF00005 ABC transporter Atu4124 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu4125 PF00005 ABC transporter Atu4126 PF02653 Branched-chain amino acid transport system / permease component Atu4127 PF11862 Domain of unknown function (DUF3382) Atu4127 PF02653 Branched-chain amino acid transport system / permease component Atu4128 PF05199 GMC oxidoreductase Atu4128 PF00732 GMC oxidoreductase Atu4129 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu4129 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Atu4130 PF13193 AMP-binding enzyme C-terminal domain Atu4130 PF00501 AMP-binding enzyme Atu4135 PF01011 PQQ enzyme repeat Atu4136 PF05974 Domain of unknown function (DUF892) Atu4138 PF03275 UDP-galactopyranose mutase Atu4142 PF01965 DJ-1/PfpI family Atu4147 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain Atu4147 PF02951 Prokaryotic glutathione synthetase, N-terminal domain Atu4148 PF16363 GDP-mannose 4,6 dehydratase Atu4149 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain Atu4149 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain Atu4149 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain Atu4151 PF03466 LysR substrate binding domain Atu4151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4153 PF00171 Aldehyde dehydrogenase family Atu4154 PF09084 NMT1/THI5 like Atu4155 PF00528 Binding-protein-dependent transport system inner membrane component Atu4156 PF00005 ABC transporter Atu4157 PF01619 Proline dehydrogenase Atu4157 PF00171 Aldehyde dehydrogenase family Atu4157 PF14850 DNA-binding domain of Proline dehydrogenase Atu4157 PF18327 Proline utilization A proline dehydrogenase N-terminal domain Atu4159 PF01037 Lrp/AsnC ligand binding domain Atu4160 PF08281 Sigma-70, region 4 Atu4160 PF04542 Sigma-70 region 2 Atu4162 PF00072 Response regulator receiver domain Atu4163 PF08447 PAS fold Atu4163 PF07536 HWE histidine kinase Atu4163 PF13426 PAS domain Atu4164 PF13581 Histidine kinase-like ATPase domain Atu4164 PF13426 PAS domain Atu4164 PF07536 HWE histidine kinase Atu4166 PF16363 GDP-mannose 4,6 dehydratase Atu4169 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain Atu4170 PF03435 Saccharopine dehydrogenase NADP binding domain Atu4170 PF16653 Saccharopine dehydrogenase C-terminal domain Atu4171 PF00271 Helicase conserved C-terminal domain Atu4171 PF00270 DEAD/DEAH box helicase Atu4172 PF00696 Amino acid kinase family Atu4172 PF13840 ACT domain Atu4172 PF01842 ACT domain Atu4173 PF01590 GAF domain Atu4173 PF05524 PEP-utilising enzyme, N-terminal Atu4173 PF02896 PEP-utilising enzyme, TIM barrel domain Atu4173 PF00391 PEP-utilising enzyme, mobile domain Atu4174 PF03462 PCRF domain Atu4174 PF00472 RF-1 domain Atu4175 PF17827 PrmC N-terminal domain Atu4175 PF05175 Methyltransferase small domain Atu4177 PF17871 AAA lid domain Atu4177 PF02861 Clp amino terminal domain, pathogenicity island component Atu4177 PF10431 C-terminal, D2-small domain, of ClpB protein Atu4177 PF00004 ATPase family associated with various cellular activities (AAA) Atu4177 PF07724 AAA domain (Cdc48 subfamily) Atu4178 PF01464 Transglycosylase SLT domain Atu4178 PF10145 Phage-related minor tail protein Atu4178 PF01551 Peptidase family M23 Atu4189 PF00701 Dihydrodipicolinate synthetase family Atu4190 PF08450 SMP-30/Gluconolactonase/LRE-like region Atu4191 PF07729 FCD domain Atu4191 PF00392 Bacterial regulatory proteins, gntR family Atu4192 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4193 PF00528 Binding-protein-dependent transport system inner membrane component Atu4194 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4194 PF00528 Binding-protein-dependent transport system inner membrane component Atu4195 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4195 PF00005 ABC transporter Atu4196 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu4196 PF13378 Enolase C-terminal domain-like Atu4201 PF03358 NADPH-dependent FMN reductase Atu4202 PF13649 Methyltransferase domain Atu4203 PF01161 Phosphatidylethanolamine-binding protein Atu4205 PF00440 Bacterial regulatory proteins, tetR family Atu4205 PF02909 Tetracyclin repressor-like, C-terminal domain Atu4206 PF07690 Major Facilitator Superfamily Atu4207 PF01047 MarR family Atu4207 PF00480 ROK family Atu4210 PF00528 Binding-protein-dependent transport system inner membrane component Atu4211 PF08402 TOBE domain Atu4211 PF00005 ABC transporter Atu4212 PF03009 Glycerophosphoryl diester phosphodiesterase family Atu4214 PF00313 'Cold-shock' DNA-binding domain Atu4215 PF12327 FtsZ family, C-terminal domain Atu4215 PF00091 Tubulin/FtsZ family, GTPase domain Atu4216 PF00109 Beta-ketoacyl synthase, N-terminal domain Atu4216 PF02801 Beta-ketoacyl synthase, C-terminal domain Atu4219 PF00873 AcrB/AcrD/AcrF family Atu4220 PF00106 short chain dehydrogenase Atu4222 PF17806 Sarcosine oxidase A3 domain Atu4222 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu4222 PF08669 Glycine cleavage T-protein C-terminal barrel domain Atu4222 PF01571 Aminomethyltransferase folate-binding domain Atu4223 PF04267 Sarcosine oxidase, delta subunit family Atu4224 PF01266 FAD dependent oxidoreductase Atu4225 PF01965 DJ-1/PfpI family Atu4225 PF12833 Helix-turn-helix domain Atu4228 PF01493 GXGXG motif Atu4229 PF01645 Conserved region in glutamate synthase Atu4230 PF00120 Glutamine synthetase, catalytic domain Atu4231 PF00551 Formyl transferase Atu4232 PF07729 FCD domain Atu4232 PF00392 Bacterial regulatory proteins, gntR family Atu4235 PF00005 ABC transporter Atu4236 PF00465 Iron-containing alcohol dehydrogenase Atu4238 PF12697 Alpha/beta hydrolase family Atu4239 PF01613 Flavin reductase like domain Atu4240 PF00296 Luciferase-like monooxygenase Atu4241 PF00171 Aldehyde dehydrogenase family Atu4244 PF00528 Binding-protein-dependent transport system inner membrane component Atu4245 PF00528 Binding-protein-dependent transport system inner membrane component Atu4246 PF08402 TOBE domain Atu4246 PF00005 ABC transporter Atu4247 PF00171 Aldehyde dehydrogenase family Atu4249 PF17912 MalK OB fold domain Atu4249 PF00005 ABC transporter Atu4249 PF03459 TOBE domain Atu4250 PF00528 Binding-protein-dependent transport system inner membrane component Atu4253 PF00890 FAD binding domain Atu4253 PF04205 FMN-binding domain Atu4254 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Atu4254 PF00356 Bacterial regulatory proteins, lacI family Atu4256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4256 PF00005 ABC transporter Atu4257 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4257 PF00528 Binding-protein-dependent transport system inner membrane component Atu4258 PF00528 Binding-protein-dependent transport system inner membrane component Atu4259 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4260 PF00528 Binding-protein-dependent transport system inner membrane component Atu4261 PF00005 ABC transporter Atu4263 PF04303 PrpF protein Atu4264 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4264 PF03466 LysR substrate binding domain Atu4266 PF00392 Bacterial regulatory proteins, gntR family Atu4266 PF00155 Aminotransferase class I and II Atu4269 PF02567 Phenazine biosynthesis-like protein Atu4270 PF00293 NUDIX domain Atu4271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4271 PF03466 LysR substrate binding domain Atu4272 PF00364 Biotin-requiring enzyme Atu4273 PF02785 Biotin carboxylase C-terminal domain Atu4273 PF00289 Biotin carboxylase, N-terminal domain Atu4273 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain Atu4276 PF02626 Carboxyltransferase domain, subdomain A and B Atu4277 PF03746 LamB/YcsF family Atu4279 PF03466 LysR substrate binding domain Atu4279 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4280 PF00106 short chain dehydrogenase Atu4281 PF00528 Binding-protein-dependent transport system inner membrane component Atu4282 PF00528 Binding-protein-dependent transport system inner membrane component Atu4283 PF00005 ABC transporter Atu4284 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu4285 PF03737 Aldolase/RraA Atu4288 PF03466 LysR substrate binding domain Atu4288 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4289 PF08240 Alcohol dehydrogenase GroES-like domain Atu4289 PF00107 Zinc-binding dehydrogenase Atu4291 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4291 PF03466 LysR substrate binding domain Atu4292 PF07690 Major Facilitator Superfamily Atu4293 PF00296 Luciferase-like monooxygenase Atu4294 PF00248 Aldo/keto reductase family Atu4295 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Atu4295 PF01488 Shikimate / quinate 5-dehydrogenase Atu4295 PF08501 Shikimate dehydrogenase substrate binding domain Atu4296 PF00732 GMC oxidoreductase Atu4296 PF05199 GMC oxidoreductase Atu4297 PF12833 Helix-turn-helix domain Atu4297 PF02311 AraC-like ligand binding domain Atu4298 PF00924 Mechanosensitive ion channel Atu4300 PF00196 Bacterial regulatory proteins, luxR family Atu4300 PF00072 Response regulator receiver domain Atu4304 PF00924 Mechanosensitive ion channel Atu4305 PF00512 His Kinase A (phospho-acceptor) domain Atu4305 PF00989 PAS fold Atu4305 PF13426 PAS domain Atu4305 PF13493 Domain of unknown function (DUF4118) Atu4305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4305 PF08447 PAS fold Atu4306 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4306 PF00672 HAMP domain Atu4306 PF00512 His Kinase A (phospho-acceptor) domain Atu4306 PF00072 Response regulator receiver domain Atu4306 PF01627 Hpt domain Atu4306 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) Atu4307 PF16123 Hydroxyacylglutathione hydrolase C-terminus Atu4307 PF00753 Metallo-beta-lactamase superfamily Atu4310 PF01266 FAD dependent oxidoreductase Atu4312 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu4312 PF17806 Sarcosine oxidase A3 domain Atu4312 PF08669 Glycine cleavage T-protein C-terminal barrel domain Atu4312 PF01571 Aminomethyltransferase folate-binding domain Atu4314 PF00464 Serine hydroxymethyltransferase Atu4315 PF00551 Formyl transferase Atu4317 PF00440 Bacterial regulatory proteins, tetR family Atu4318 PF00107 Zinc-binding dehydrogenase Atu4318 PF08240 Alcohol dehydrogenase GroES-like domain Atu4319 PF12833 Helix-turn-helix domain Atu4320 PF13407 Periplasmic binding protein domain Atu4321 PF00005 ABC transporter Atu4322 PF02653 Branched-chain amino acid transport system / permease component Atu4323 PF00106 short chain dehydrogenase Atu4324 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu4324 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu4326 PF08946 Osmosensory transporter coiled coil Atu4326 PF00083 Sugar (and other) transporter Atu4329 PF02563 Polysaccharide biosynthesis/export protein Atu4333 PF00691 OmpA family Atu4344 PF07724 AAA domain (Cdc48 subfamily) Atu4344 PF10431 C-terminal, D2-small domain, of ClpB protein Atu4344 PF17871 AAA lid domain Atu4344 PF00004 ATPase family associated with various cellular activities (AAA) Atu4348 PF04717 Type VI secretion system, phage-baseplate injector Atu4353 PF00563 EAL domain Atu4353 PF08448 PAS fold Atu4353 PF08447 PAS fold Atu4353 PF00990 Diguanylate cyclase, GGDEF domain Atu4355 PF03741 Integral membrane protein TerC family Atu4355 PF03471 Transporter associated domain Atu4358 PF00005 ABC transporter Atu4358 PF17912 MalK OB fold domain Atu4358 PF03459 TOBE domain Atu4359 PF00528 Binding-protein-dependent transport system inner membrane component Atu4360 PF00528 Binding-protein-dependent transport system inner membrane component Atu4361 PF13416 Bacterial extracellular solute-binding protein Atu4362 PF01261 Xylose isomerase-like TIM barrel Atu4363 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu4363 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu4364 PF00356 Bacterial regulatory proteins, lacI family Atu4367 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4367 PF03466 LysR substrate binding domain Atu4369 PF13407 Periplasmic binding protein domain Atu4370 PF00005 ABC transporter Atu4371 PF02653 Branched-chain amino acid transport system / permease component Atu4372 PF02653 Branched-chain amino acid transport system / permease component Atu4373 PF00356 Bacterial regulatory proteins, lacI family Atu4375 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu4375 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu4379 PF00034 Cytochrome c Atu4382 PF07732 Multicopper oxidase Atu4382 PF00394 Multicopper oxidase Atu4386 PF00092 von Willebrand factor type A domain Atu4387 PF07728 AAA domain (dynein-related subfamily) Atu4387 PF08406 CbbQ/NirQ/NorQ C-terminal Atu4388 PF00115 Cytochrome C and Quinol oxidase polypeptide I Atu4389 PF00034 Cytochrome c Atu4391 PF00510 Cytochrome c oxidase subunit III Atu4393 PF02441 Flavoprotein Atu4394 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase Atu4395 PF04343 Protein of unknown function, DUF488 Atu4403 PF00005 ABC transporter Atu4405 PF06796 Periplasmic nitrate reductase protein NapE Atu4408 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Atu4408 PF00384 Molybdopterin oxidoreductase Atu4408 PF01568 Molydopterin dinucleotide binding domain Atu4409 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) Atu4410 PF03264 NapC/NirT cytochrome c family, N-terminal region Atu4411 PF03466 LysR substrate binding domain Atu4411 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4413 PF00005 ABC transporter Atu4413 PF00664 ABC transporter transmembrane region Atu4414 PF00529 HlyD membrane-fusion protein of T1SS Atu4414 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu4416 PF17837 4'-phosphopantetheinyl transferase N-terminal domain Atu4416 PF01648 4'-phosphopantetheinyl transferase superfamily Atu4418 PF00441 Acyl-CoA dehydrogenase, C-terminal domain Atu4418 PF02770 Acyl-CoA dehydrogenase, middle domain Atu4418 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu4419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4419 PF03466 LysR substrate binding domain Atu4420 PF00356 Bacterial regulatory proteins, lacI family Atu4422 PF00528 Binding-protein-dependent transport system inner membrane component Atu4424 PF08402 TOBE domain Atu4424 PF00005 ABC transporter Atu4426 PF13382 Adenine deaminase C-terminal domain Atu4426 PF01979 Amidohydrolase family Atu4427 PF03796 DnaB-like helicase C terminal domain Atu4428 PF07687 Peptidase dimerisation domain Atu4428 PF01546 Peptidase family M20/M25/M40 Atu4430 PF01244 Membrane dipeptidase (Peptidase family M19) Atu4431 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4432 PF00528 Binding-protein-dependent transport system inner membrane component Atu4433 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4433 PF00528 Binding-protein-dependent transport system inner membrane component Atu4434 PF00005 ABC transporter Atu4434 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4435 PF00005 ABC transporter Atu4437 PF03466 LysR substrate binding domain Atu4437 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4438 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4439 PF00528 Binding-protein-dependent transport system inner membrane component Atu4440 PF00528 Binding-protein-dependent transport system inner membrane component Atu4440 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4441 PF01425 Amidase Atu4442 PF01965 DJ-1/PfpI family Atu4444 PF07687 Peptidase dimerisation domain Atu4444 PF01546 Peptidase family M20/M25/M40 Atu4445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4445 PF00005 ABC transporter Atu4446 PF04198 Putative sugar-binding domain Atu4448 PF00528 Binding-protein-dependent transport system inner membrane component Atu4449 PF00528 Binding-protein-dependent transport system inner membrane component Atu4450 PF08402 TOBE domain Atu4450 PF00005 ABC transporter Atu4451 PF01232 Mannitol dehydrogenase Rossmann domain Atu4451 PF08125 Mannitol dehydrogenase C-terminal domain Atu4452 PF13419 Haloacid dehalogenase-like hydrolase Atu4453 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu4453 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu4454 PF01418 Helix-turn-helix domain, rpiR family Atu4454 PF01380 SIS domain Atu4457 PF10576 Iron-sulfur binding domain of endonuclease III Atu4457 PF00730 HhH-GPD superfamily base excision DNA repair protein Atu4457 PF00633 Helix-hairpin-helix motif Atu4459 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain Atu4459 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain Atu4462 PF04198 Putative sugar-binding domain Atu4462 PF13936 Helix-turn-helix domain Atu4464 PF00923 Transaldolase/Fructose-6-phosphate aldolase Atu4465 PF09339 IclR helix-turn-helix domain Atu4465 PF01614 Bacterial transcriptional regulator Atu4468 PF00950 ABC 3 transport family Atu4469 PF00950 ABC 3 transport family Atu4470 PF00005 ABC transporter Atu4471 PF01297 Zinc-uptake complex component A periplasmic Atu4473 PF00152 tRNA synthetases class II (D, K and N) Atu4473 PF01336 OB-fold nucleic acid binding domain Atu4474 PF00749 tRNA synthetases class I (E and Q), catalytic domain Atu4475 PF02080 TrkA-C domain Atu4475 PF03600 Citrate transporter Atu4476 PF03471 Transporter associated domain Atu4476 PF03741 Integral membrane protein TerC family Atu4477 PF00440 Bacterial regulatory proteins, tetR family Atu4478 PF13533 Biotin-lipoyl like Atu4479 PF07690 Major Facilitator Superfamily Atu4481 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Atu4481 PF00356 Bacterial regulatory proteins, lacI family Atu4482 PF00370 FGGY family of carbohydrate kinases, N-terminal domain Atu4482 PF02782 FGGY family of carbohydrate kinases, C-terminal domain Atu4483 PF01261 Xylose isomerase-like TIM barrel Atu4485 PF00232 Glycosyl hydrolase family 1 Atu4486 PF00881 Nitroreductase family Atu4487 PF00005 ABC transporter Atu4487 PF09383 NIL domain Atu4488 PF00528 Binding-protein-dependent transport system inner membrane component Atu4489 PF03180 NLPA lipoprotein Atu4490 PF00990 Diguanylate cyclase, GGDEF domain Atu4490 PF03707 Bacterial signalling protein N terminal repeat Atu4490 PF13188 PAS domain Atu4490 PF00563 EAL domain Atu4494 PF01081 KDPG and KHG aldolase Atu4498 PF03824 High-affinity nickel-transport protein Atu4502 PF02492 CobW/HypB/UreG, nucleotide-binding domain Atu4502 PF07683 Cobalamin synthesis protein cobW C-terminal domain Atu4503 PF02633 Creatinine amidohydrolase Atu4504 PF01047 MarR family Atu4505 PF00356 Bacterial regulatory proteins, lacI family Atu4507 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu4507 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu4508 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu4508 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu4509 PF04962 KduI/IolB family Atu4510 PF01261 Xylose isomerase-like TIM barrel Atu4511 PF00205 Thiamine pyrophosphate enzyme, central domain Atu4511 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Atu4511 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Atu4512 PF00294 pfkB family carbohydrate kinase Atu4515 PF00005 ABC transporter Atu4516 PF00005 ABC transporter Atu4516 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu4519 PF13458 Periplasmic binding protein Atu4521 PF12833 Helix-turn-helix domain Atu4523 PF00528 Binding-protein-dependent transport system inner membrane component Atu4523 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4524 PF00528 Binding-protein-dependent transport system inner membrane component Atu4525 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4526 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4526 PF00005 ABC transporter Atu4529 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily Atu4531 PF01220 Dehydroquinase class II Atu4532 PF18317 Shikimate 5'-dehydrogenase C-terminal domain Atu4532 PF08501 Shikimate dehydrogenase substrate binding domain Atu4533 PF00005 ABC transporter Atu4534 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu4535 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu4536 PF00528 Binding-protein-dependent transport system inner membrane component Atu4537 PF00528 Binding-protein-dependent transport system inner membrane component Atu4538 PF00206 Lyase Atu4538 PF10397 Adenylosuccinate lyase C-terminus Atu4539 PF00775 Dioxygenase Atu4540 PF12391 Protocatechuate 3,4-dioxygenase beta subunit N terminal Atu4540 PF00775 Dioxygenase Atu4541 PF02627 Carboxymuconolactone decarboxylase family Atu4542 PF00561 alpha/beta hydrolase fold Atu4543 PF03466 LysR substrate binding domain Atu4543 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4544 PF01494 FAD binding domain Atu4546 PF01614 Bacterial transcriptional regulator Atu4546 PF09339 IclR helix-turn-helix domain Atu4547 PF01144 Coenzyme A transferase Atu4548 PF01144 Coenzyme A transferase Atu4549 PF00108 Thiolase, N-terminal domain Atu4549 PF02803 Thiolase, C-terminal domain Atu4550 PF00356 Bacterial regulatory proteins, lacI family Atu4551 PF13407 Periplasmic binding protein domain Atu4552 PF13407 Periplasmic binding protein domain Atu4553 PF01261 Xylose isomerase-like TIM barrel Atu4554 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu4554 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu4556 PF00356 Bacterial regulatory proteins, lacI family Atu4557 PF00528 Binding-protein-dependent transport system inner membrane component Atu4558 PF00528 Binding-protein-dependent transport system inner membrane component Atu4559 PF00005 ABC transporter Atu4559 PF17912 MalK OB fold domain Atu4561 PF07470 Glycosyl Hydrolase Family 88 Atu4567 PF00480 ROK family Atu4567 PF01325 Iron dependent repressor, N-terminal DNA binding domain Atu4569 PF00005 ABC transporter Atu4569 PF17912 MalK OB fold domain Atu4570 PF00528 Binding-protein-dependent transport system inner membrane component Atu4571 PF00528 Binding-protein-dependent transport system inner membrane component Atu4572 PF03009 Glycerophosphoryl diester phosphodiesterase family Atu4573 PF00459 Inositol monophosphatase family Atu4574 PF00106 short chain dehydrogenase Atu4575 PF12852 Cupin Atu4575 PF12833 Helix-turn-helix domain Atu4576 PF00480 ROK family Atu4578 PF00005 ABC transporter Atu4578 PF08402 TOBE domain Atu4579 PF00528 Binding-protein-dependent transport system inner membrane component Atu4582 PF00037 4Fe-4S binding domain Atu4582 PF11953 Domain of unknown function (DUF3470) Atu4583 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Atu4583 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Atu4588 PF01758 Sodium Bile acid symporter family Atu4589 PF01758 Sodium Bile acid symporter family Atu4590 PF00248 Aldo/keto reductase family Atu4591 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4591 PF03466 LysR substrate binding domain Atu4593 PF01557 Fumarylacetoacetate (FAA) hydrolase family Atu4597 PF00528 Binding-protein-dependent transport system inner membrane component Atu4598 PF00005 ABC transporter Atu4600 PF00005 ABC transporter Atu4600 PF00664 ABC transporter transmembrane region Atu4601 PF00665 Integrase core domain Atu4602 PF01527 Transposase Atu4604 PF13683 Integrase core domain Atu4604 PF13276 HTH-like domain Atu4605 PF01527 Transposase Atu4607 PF01757 Acyltransferase family Atu4608 PF00535 Glycosyl transferase family 2 Atu4610 PF01370 NAD dependent epimerase/dehydratase family Atu4611 PF00665 Integrase core domain Atu4613 PF00535 Glycosyl transferase family 2 Atu4615 PF00483 Nucleotidyl transferase Atu4616 PF04321 RmlD substrate binding domain Atu4617 PF16363 GDP-mannose 4,6 dehydratase Atu4618 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Atu4619 PF00580 UvrD/REP helicase N-terminal domain Atu4619 PF13361 UvrD-like helicase C-terminal domain Atu4620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4620 PF00005 ABC transporter Atu4621 PF00005 ABC transporter Atu4621 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4622 PF00528 Binding-protein-dependent transport system inner membrane component Atu4622 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4623 PF00528 Binding-protein-dependent transport system inner membrane component Atu4624 PF00392 Bacterial regulatory proteins, gntR family Atu4624 PF07729 FCD domain Atu4625 PF03786 D-mannonate dehydratase (UxuA) Atu4626 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4628 PF00563 EAL domain Atu4628 PF00990 Diguanylate cyclase, GGDEF domain Atu4628 PF13188 PAS domain Atu4628 PF03707 Bacterial signalling protein N terminal repeat Atu4631 PF02735 Ku70/Ku80 beta-barrel domain Atu4632 PF01068 ATP dependent DNA ligase domain Atu4632 PF13298 DNA polymerase Ligase (LigD) Atu4632 PF04679 ATP dependent DNA ligase C terminal region Atu4633 PF01384 Phosphate transporter family Atu4634 PF01865 Protein of unknown function DUF47 Atu4636 PF00873 AcrB/AcrD/AcrF family Atu4637 PF13533 Biotin-lipoyl like Atu4638 PF00486 Transcriptional regulatory protein, C terminal Atu4638 PF00072 Response regulator receiver domain Atu4639 PF00512 His Kinase A (phospho-acceptor) domain Atu4639 PF00672 HAMP domain Atu4639 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4641 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4641 PF03466 LysR substrate binding domain Atu4642 PF00141 Peroxidase Atu4644 PF12833 Helix-turn-helix domain Atu4644 PF10114 Sensory domain found in PocR Atu4645 PF00171 Aldehyde dehydrogenase family Atu4646 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4646 PF03466 LysR substrate binding domain Atu4647 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Atu4648 PF00884 Sulfatase Atu4648 PF12411 Choline sulfatase enzyme C terminal Atu4649 PF00294 pfkB family carbohydrate kinase Atu4650 PF00005 ABC transporter Atu4650 PF08402 TOBE domain Atu4651 PF14698 Argininosuccinate lyase C-terminal Atu4651 PF00206 Lyase Atu4652 PF00528 Binding-protein-dependent transport system inner membrane component Atu4653 PF00528 Binding-protein-dependent transport system inner membrane component Atu4654 PF13416 Bacterial extracellular solute-binding protein Atu4655 PF00480 ROK family Atu4660 PF11975 Family 4 glycosyl hydrolase C-terminal domain Atu4660 PF02056 Family 4 glycosyl hydrolase Atu4661 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4662 PF00528 Binding-protein-dependent transport system inner membrane component Atu4663 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4663 PF00528 Binding-protein-dependent transport system inner membrane component Atu4664 PF00005 ABC transporter Atu4664 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4665 PF02056 Family 4 glycosyl hydrolase Atu4665 PF11975 Family 4 glycosyl hydrolase C-terminal domain Atu4666 PF13533 Biotin-lipoyl like Atu4667 PF00005 ABC transporter Atu4671 PF00072 Response regulator receiver domain Atu4673 PF12327 FtsZ family, C-terminal domain Atu4673 PF00091 Tubulin/FtsZ family, GTPase domain Atu4674 PF07729 FCD domain Atu4674 PF00392 Bacterial regulatory proteins, gntR family Atu4675 PF00701 Dihydrodipicolinate synthetase family Atu4676 PF02615 Malate/L-lactate dehydrogenase Atu4679 PF00528 Binding-protein-dependent transport system inner membrane component Atu4680 PF00528 Binding-protein-dependent transport system inner membrane component Atu4681 PF00005 ABC transporter Atu4682 PF01266 FAD dependent oxidoreductase Atu4684 PF05544 Proline racemase Atu4685 PF00356 Bacterial regulatory proteins, lacI family Atu4687 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu4689 PF00528 Binding-protein-dependent transport system inner membrane component Atu4690 PF00005 ABC transporter Atu4691 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu4691 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu4692 PF00990 Diguanylate cyclase, GGDEF domain Atu4692 PF03707 Bacterial signalling protein N terminal repeat Atu4692 PF00563 EAL domain Atu4693 PF02530 Porin subfamily Atu4694 PF01979 Amidohydrolase family Atu4695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4697 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu4697 PF00528 Binding-protein-dependent transport system inner membrane component Atu4698 PF01979 Amidohydrolase family Atu4699 PF01979 Amidohydrolase family Atu4700 PF00005 ABC transporter Atu4700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4701 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4701 PF00005 ABC transporter Atu4702 PF07729 FCD domain Atu4702 PF00392 Bacterial regulatory proteins, gntR family Atu4703 PF01613 Flavin reductase like domain Atu4704 PF01177 Asp/Glu/Hydantoin racemase Atu4705 PF03466 LysR substrate binding domain Atu4705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4707 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit Atu4707 PF00037 4Fe-4S binding domain Atu4707 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Atu4708 PF00384 Molybdopterin oxidoreductase Atu4708 PF04879 Molybdopterin oxidoreductase Fe4S4 domain Atu4708 PF01568 Molydopterin dinucleotide binding domain Atu4708 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Atu4708 PF00037 4Fe-4S binding domain Atu4710 PF07690 Major Facilitator Superfamily Atu4711 PF00672 HAMP domain Atu4711 PF00512 His Kinase A (phospho-acceptor) domain Atu4711 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4712 PF00072 Response regulator receiver domain Atu4712 PF00486 Transcriptional regulatory protein, C terminal Atu4716 PF00072 Response regulator receiver domain Atu4716 PF00196 Bacterial regulatory proteins, luxR family Atu4718 PF07729 FCD domain Atu4718 PF00392 Bacterial regulatory proteins, gntR family Atu4719 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu4720 PF00528 Binding-protein-dependent transport system inner membrane component Atu4723 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu4723 PF00005 ABC transporter Atu4724 PF05532 CsbD-like Atu4726 PF02777 Iron/manganese superoxide dismutases, C-terminal domain Atu4726 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain Atu4727 PF03401 Tripartite tricarboxylate transporter family receptor Atu4728 PF00005 ABC transporter Atu4728 PF00664 ABC transporter transmembrane region Atu4729 PF00005 ABC transporter Atu4731 PF13954 PapC N-terminal domain Atu4731 PF13953 PapC C-terminal domain Atu4731 PF00577 Outer membrane usher protein Atu4734 PF06434 Aconitate hydratase 2 N-terminus Atu4734 PF11791 Aconitate B N-terminal domain Atu4734 PF00330 Aconitase family (aconitate hydratase) Atu4736 PF00672 HAMP domain Atu4736 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu4738 PF00132 Bacterial transferase hexapeptide (six repeats) Atu4740 PF08240 Alcohol dehydrogenase GroES-like domain Atu4740 PF00107 Zinc-binding dehydrogenase Atu4741 PF02954 Bacterial regulatory protein, Fis family Atu4741 PF00158 Sigma-54 interaction domain Atu4741 PF01590 GAF domain Atu4743 PF00356 Bacterial regulatory proteins, lacI family Atu4745 PF00005 ABC transporter Atu4746 PF02653 Branched-chain amino acid transport system / permease component Atu4747 PF02653 Branched-chain amino acid transport system / permease component Atu4748 PF01261 Xylose isomerase-like TIM barrel Atu4749 PF00485 Phosphoribulokinase / Uridine kinase family Atu4750 PF01261 Xylose isomerase-like TIM barrel Atu4752 PF00005 ABC transporter Atu4753 PF00528 Binding-protein-dependent transport system inner membrane component Atu4754 PF00528 Binding-protein-dependent transport system inner membrane component Atu4755 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu4756 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Atu4757 PF01321 Creatinase/Prolidase N-terminal domain Atu4757 PF00557 Metallopeptidase family M24 Atu4758 PF02423 Ornithine cyclodeaminase/mu-crystallin family Atu4759 PF00291 Pyridoxal-phosphate dependent enzyme Atu4760 PF00392 Bacterial regulatory proteins, gntR family Atu4760 PF00155 Aminotransferase class I and II Atu4761 PF00202 Aminotransferase class-III Atu4762 PF00171 Aldehyde dehydrogenase family Atu4763 PF01037 Lrp/AsnC ligand binding domain Atu4765 PF04244 Deoxyribodipyrimidine photo-lyase-related protein Atu4769 PF04199 Putative cyclase Atu4770 PF01494 FAD binding domain Atu4771 PF00190 Cupin Atu4773 PF00072 Response regulator receiver domain Atu4773 PF00196 Bacterial regulatory proteins, luxR family Atu4774 PF00072 Response regulator receiver domain Atu4774 PF00196 Bacterial regulatory proteins, luxR family Atu4775 PF00072 Response regulator receiver domain Atu4775 PF13426 PAS domain Atu4775 PF00512 His Kinase A (phospho-acceptor) domain Atu4775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4775 PF08448 PAS fold Atu4776 PF00384 Molybdopterin oxidoreductase Atu4777 PF00210 Ferritin-like domain Atu4778 PF00561 alpha/beta hydrolase fold Atu4781 PF00072 Response regulator receiver domain Atu4781 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu4781 PF13426 PAS domain Atu4782 PF00486 Transcriptional regulatory protein, C terminal Atu4782 PF00072 Response regulator receiver domain Atu4785 PF00528 Binding-protein-dependent transport system inner membrane component Atu4786 PF00005 ABC transporter Atu4786 PF08402 TOBE domain Atu4787 PF00459 Inositol monophosphatase family Atu4789 PF16363 GDP-mannose 4,6 dehydratase Atu4790 PF01370 NAD dependent epimerase/dehydratase family Atu4795 PF00072 Response regulator receiver domain Atu4795 PF00196 Bacterial regulatory proteins, luxR family Atu4796 PF02585 GlcNAc-PI de-N-acetylase Atu4797 PF00483 Nucleotidyl transferase Atu4798 PF08421 Putative zinc binding domain Atu4798 PF08484 C-methyltransferase C-terminal domain Atu4799 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase Atu4800 PF09940 Domain of unknown function (DUF2172) Atu4800 PF16254 Domain of unknown function (DUF4910) Atu4800 PF16221 winged helix-turn-helix Atu4801 PF16363 GDP-mannose 4,6 dehydratase Atu4802 PF00202 Aminotransferase class-III Atu4803 PF00072 Response regulator receiver domain Atu4803 PF00196 Bacterial regulatory proteins, luxR family Atu4805 PF00196 Bacterial regulatory proteins, luxR family Atu4805 PF00072 Response regulator receiver domain Atu4809 PF13439 Glycosyltransferase Family 4 Atu4809 PF00534 Glycosyl transferases group 1 Atu4811 PF00953 Glycosyl transferase family 4 Atu4815 PF00534 Glycosyl transferases group 1 Atu4815 PF13439 Glycosyltransferase Family 4 Atu4816 PF13439 Glycosyltransferase Family 4 Atu4816 PF00534 Glycosyl transferases group 1 Atu4818 PF01037 Lrp/AsnC ligand binding domain Atu4822 PF00501 AMP-binding enzyme Atu4822 PF13193 AMP-binding enzyme C-terminal domain Atu4824 PF09339 IclR helix-turn-helix domain Atu4824 PF01614 Bacterial transcriptional regulator Atu4826 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component Atu4826 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu4827 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu4833 PF09137 Glucodextranase, domain N Atu4833 PF00723 Glycosyl hydrolases family 15 Atu4834 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu4834 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain Atu4835 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain Atu4835 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain Atu4841 PF00455 DeoR C terminal sensor domain Atu4841 PF08220 DeoR-like helix-turn-helix domain Atu4842 PF13407 Periplasmic binding protein domain Atu4843 PF00005 ABC transporter Atu4844 PF02653 Branched-chain amino acid transport system / permease component Atu4845 PF02653 Branched-chain amino acid transport system / permease component Atu4847 PF00294 pfkB family carbohydrate kinase Atu4847 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) Atu4848 PF01791 DeoC/LacD family aldolase Atu4849 PF00171 Aldehyde dehydrogenase family Atu4850 PF07756 Protein of unknown function (DUF1612) Atu4850 PF11972 HTH DNA binding domain Atu4851 PF00285 Citrate synthase, C-terminal domain Atu4855 PF17841 BID domain of Bartonella effector protein (Bep) Atu4855 PF03389 MobA/MobL family Atu4855 PF01443 Viral (Superfamily 1) RNA helicase Atu4858 PF02534 Type IV secretory system Conjugative DNA transfer Atu4861 PF01695 IstB-like ATP binding protein Atu4864 PF01047 MarR family Atu4868 PF00248 Aldo/keto reductase family Atu4870 PF00107 Zinc-binding dehydrogenase Atu4870 PF08240 Alcohol dehydrogenase GroES-like domain Atu4872 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu4872 PF03466 LysR substrate binding domain Atu4873 PF00440 Bacterial regulatory proteins, tetR family Atu4876 PF00248 Aldo/keto reductase family Atu4880 PF12833 Helix-turn-helix domain Atu4880 PF07883 Cupin domain Atu4882 PF07756 Protein of unknown function (DUF1612) Atu4882 PF11972 HTH DNA binding domain Atu4890 PF00665 Integrase core domain Atu4891 PF01527 Transposase Atu4894 PF00665 Integrase core domain Atu4896 PF13302 Acetyltransferase (GNAT) domain Atu5000 PF00376 MerR family regulatory protein Atu5000 PF13614 AAA domain Atu5001 PF02195 ParB-like nuclease domain Atu5001 PF07506 RepB plasmid partitioning protein Atu5002 PF03428 Replication protein C N-terminal domain Atu5002 PF11800 Replication protein C C-terminal region Atu5004 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu5004 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu5005 PF00005 ABC transporter Atu5006 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu5007 PF00356 Bacterial regulatory proteins, lacI family Atu5010 PF02525 Flavodoxin-like fold Atu5016 PF11972 HTH DNA binding domain Atu5016 PF07756 Protein of unknown function (DUF1612) Atu5023 PF02463 RecF/RecN/SMC N terminal domain Atu5024 PF00570 HRDC domain Atu5024 PF13361 UvrD-like helicase C-terminal domain Atu5027 PF00665 Integrase core domain Atu5028 PF01527 Transposase Atu5039 PF13784 Fic/DOC family N-terminal Atu5039 PF02661 Fic/DOC family Atu5041 PF17762 HTH domain found in ParB protein Atu5041 PF02195 ParB-like nuclease domain Atu5049 PF02735 Ku70/Ku80 beta-barrel domain Atu5050 PF02735 Ku70/Ku80 beta-barrel domain Atu5051 PF01068 ATP dependent DNA ligase domain Atu5051 PF04679 ATP dependent DNA ligase C terminal region Atu5051 PF13298 DNA polymerase Ligase (LigD) Atu5052 PF00011 Hsp20/alpha crystallin family Atu5055 PF13298 DNA polymerase Ligase (LigD) Atu5055 PF04679 ATP dependent DNA ligase C terminal region Atu5055 PF01068 ATP dependent DNA ligase domain Atu5058 PF13416 Bacterial extracellular solute-binding protein Atu5060 PF00528 Binding-protein-dependent transport system inner membrane component Atu5062 PF08402 TOBE domain Atu5062 PF00005 ABC transporter Atu5063 PF01380 SIS domain Atu5063 PF01418 Helix-turn-helix domain, rpiR family Atu5064 PF01047 MarR family Atu5065 PF00561 alpha/beta hydrolase fold Atu5067 PF00701 Dihydrodipicolinate synthetase family Atu5068 PF00005 ABC transporter Atu5068 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu5070 PF00528 Binding-protein-dependent transport system inner membrane component Atu5071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu5073 PF04166 Pyridoxal phosphate biosynthetic protein PdxA Atu5074 PF00465 Iron-containing alcohol dehydrogenase Atu5075 PF00392 Bacterial regulatory proteins, gntR family Atu5075 PF07729 FCD domain Atu5076 PF07005 Sugar-binding N-terminal domain Atu5076 PF17042 Nucleotide-binding C-terminal domain Atu5078 PF00356 Bacterial regulatory proteins, lacI family Atu5080 PF00528 Binding-protein-dependent transport system inner membrane component Atu5081 PF00528 Binding-protein-dependent transport system inner membrane component Atu5082 PF07944 Beta-L-arabinofuranosidase, GH127 Atu5083 PF17912 MalK OB fold domain Atu5083 PF00005 ABC transporter Atu5084 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5084 PF03466 LysR substrate binding domain Atu5086 PF06745 KaiC Atu5087 PF13581 Histidine kinase-like ATPase domain Atu5087 PF13426 PAS domain Atu5087 PF07536 HWE histidine kinase Atu5090 PF07238 PilZ domain Atu5090 PF00535 Glycosyl transferase family 2 Atu5090 PF03552 Cellulose synthase Atu5097 PF13298 DNA polymerase Ligase (LigD) Atu5097 PF04679 ATP dependent DNA ligase C terminal region Atu5097 PF01068 ATP dependent DNA ligase domain Atu5100 PF07733 Bacterial DNA polymerase III alpha NTPase domain Atu5100 PF02811 PHP domain Atu5100 PF14579 Helix-hairpin-helix motif Atu5100 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Atu5104 PF05284 Protein of unknown function (DUF736) Atu5106 PF00216 Bacterial DNA-binding protein Atu5107 PF05406 WGR domain Atu5108 PF02534 Type IV secretory system Conjugative DNA transfer Atu5111 PF17841 BID domain of Bartonella effector protein (Bep) Atu5111 PF03389 MobA/MobL family Atu5111 PF01443 Viral (Superfamily 1) RNA helicase Atu5118 PF00155 Aminotransferase class I and II Atu5119 PF00072 Response regulator receiver domain Atu5119 PF00486 Transcriptional regulatory protein, C terminal Atu5121 PF00072 Response regulator receiver domain Atu5121 PF00486 Transcriptional regulatory protein, C terminal Atu5123 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain Atu5123 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain Atu5123 PF00205 Thiamine pyrophosphate enzyme, central domain Atu5124 PF00202 Aminotransferase class-III Atu5126 PF00005 ABC transporter Atu5126 PF08402 TOBE domain Atu5127 PF00528 Binding-protein-dependent transport system inner membrane component Atu5128 PF00528 Binding-protein-dependent transport system inner membrane component Atu5131 PF00005 ABC transporter Atu5136 PF09339 IclR helix-turn-helix domain Atu5136 PF01614 Bacterial transcriptional regulator Atu5137 PF00171 Aldehyde dehydrogenase family Atu5138 PF00465 Iron-containing alcohol dehydrogenase Atu5139 PF00753 Metallo-beta-lactamase superfamily Atu5147 PF02308 MgtC family Atu5150 PF00043 Glutathione S-transferase, C-terminal domain Atu5150 PF02798 Glutathione S-transferase, N-terminal domain Atu5151 PF01638 HxlR-like helix-turn-helix Atu5163 PF04956 TrbC/VIRB2 family Atu5164 PF05101 Type IV secretory pathway, VirB3-like protein Atu5165 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Atu5166 PF07996 Type IV secretion system proteins Atu5167 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Atu5169 PF04335 VirB8 protein Atu5170 PF03524 Conjugal transfer protein Atu5171 PF03743 Bacterial conjugation TrbI-like protein Atu5172 PF00437 Type II/IV secretion system protein Atu5173 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase Atu5173 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase Atu5175 PF00072 Response regulator receiver domain Atu5175 PF00486 Transcriptional regulatory protein, C terminal Atu5176 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu5176 PF00989 PAS fold Atu5176 PF00512 His Kinase A (phospho-acceptor) domain Atu5176 PF11808 Phosphate regulon sensor protein PhoR Atu5177 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion Atu5178 PF02687 FtsX-like permease family Atu5178 PF00005 ABC transporter Atu5178 PF12704 MacB-like periplasmic core domain Atu5182 PF00107 Zinc-binding dehydrogenase Atu5182 PF08240 Alcohol dehydrogenase GroES-like domain Atu5184 PF03466 LysR substrate binding domain Atu5184 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5187 PF03466 LysR substrate binding domain Atu5187 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5188 PF08240 Alcohol dehydrogenase GroES-like domain Atu5188 PF00107 Zinc-binding dehydrogenase Atu5190 PF00561 alpha/beta hydrolase fold Atu5191 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu5191 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu5193 PF00326 Prolyl oligopeptidase family Atu5194 PF07739 TipAS antibiotic-recognition domain Atu5194 PF13411 MerR HTH family regulatory protein Atu5195 PF03466 LysR substrate binding domain Atu5195 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5196 PF17969 L,D-transpeptidase C-terminal domain Atu5196 PF03734 L,D-transpeptidase catalytic domain Atu5197 PF03466 LysR substrate binding domain Atu5197 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5198 PF00248 Aldo/keto reductase family Atu5199 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu5199 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu5201 PF02678 Pirin Atu5201 PF05726 Pirin C-terminal cupin domain Atu5202 PF00107 Zinc-binding dehydrogenase Atu5202 PF08240 Alcohol dehydrogenase GroES-like domain Atu5206 PF03466 LysR substrate binding domain Atu5206 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5208 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5208 PF03466 LysR substrate binding domain Atu5211 PF01047 MarR family Atu5215 PF03466 LysR substrate binding domain Atu5215 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5218 PF00571 CBS domain Atu5218 PF00005 ABC transporter Atu5219 PF00528 Binding-protein-dependent transport system inner membrane component Atu5220 PF04069 Substrate binding domain of ABC-type glycine betaine transport system Atu5222 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu5226 PF00561 alpha/beta hydrolase fold Atu5227 PF00296 Luciferase-like monooxygenase Atu5228 PF00171 Aldehyde dehydrogenase family Atu5229 PF01613 Flavin reductase like domain Atu5232 PF01042 Endoribonuclease L-PSP Atu5234 PF00528 Binding-protein-dependent transport system inner membrane component Atu5235 PF00528 Binding-protein-dependent transport system inner membrane component Atu5236 PF00005 ABC transporter Atu5237 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu5238 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family Atu5239 PF00356 Bacterial regulatory proteins, lacI family Atu5240 PF00107 Zinc-binding dehydrogenase Atu5240 PF08240 Alcohol dehydrogenase GroES-like domain Atu5241 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5241 PF03466 LysR substrate binding domain Atu5242 PF03576 Peptidase family S58 Atu5243 PF08220 DeoR-like helix-turn-helix domain Atu5243 PF00455 DeoR C terminal sensor domain Atu5245 PF00857 Isochorismatase family Atu5246 PF00528 Binding-protein-dependent transport system inner membrane component Atu5247 PF00528 Binding-protein-dependent transport system inner membrane component Atu5248 PF08402 TOBE domain Atu5248 PF00005 ABC transporter Atu5251 PF00202 Aminotransferase class-III Atu5253 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu5254 PF00528 Binding-protein-dependent transport system inner membrane component Atu5255 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu5255 PF00528 Binding-protein-dependent transport system inner membrane component Atu5256 PF00005 ABC transporter Atu5256 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu5257 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu5257 PF00005 ABC transporter Atu5259 PF03466 LysR substrate binding domain Atu5259 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5260 PF00144 Beta-lactamase Atu5261 PF07519 Tannase and feruloyl esterase Atu5262 PF02811 PHP domain Atu5262 PF14579 Helix-hairpin-helix motif Atu5262 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Atu5262 PF07733 Bacterial DNA polymerase III alpha NTPase domain Atu5263 PF00528 Binding-protein-dependent transport system inner membrane component Atu5264 PF00528 Binding-protein-dependent transport system inner membrane component Atu5266 PF17200 Single Cache domain 2 Atu5266 PF07730 Histidine kinase Atu5267 PF00196 Bacterial regulatory proteins, luxR family Atu5267 PF00072 Response regulator receiver domain Atu5268 PF03480 Bacterial extracellular solute-binding protein, family 7 Atu5269 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component Atu5271 PF13280 WYL domain Atu5271 PF08279 HTH domain Atu5272 PF00043 Glutathione S-transferase, C-terminal domain Atu5272 PF13417 Glutathione S-transferase, N-terminal domain Atu5273 PF01047 MarR family Atu5278 PF05974 Domain of unknown function (DUF892) Atu5283 PF04542 Sigma-70 region 2 Atu5283 PF08281 Sigma-70, region 4 Atu5284 PF00128 Alpha amylase, catalytic domain Atu5284 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) Atu5284 PF11941 Domain of unknown function (DUF3459) Atu5285 PF00534 Glycosyl transferases group 1 Atu5285 PF08323 Starch synthase catalytic domain Atu5289 PF18665 Tetracyclin repressor-like, C-terminal domain Atu5289 PF00440 Bacterial regulatory proteins, tetR family Atu5290 PF01488 Shikimate / quinate 5-dehydrogenase Atu5290 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain Atu5290 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain Atu5291 PF08360 QacR-like protein, C-terminal region Atu5291 PF00440 Bacterial regulatory proteins, tetR family Atu5296 PF00561 alpha/beta hydrolase fold Atu5297 PF00561 alpha/beta hydrolase fold Atu5302 PF00202 Aminotransferase class-III Atu5303 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5303 PF03466 LysR substrate binding domain Atu5306 PF00285 Citrate synthase, C-terminal domain Atu5307 PF00285 Citrate synthase, C-terminal domain Atu5311 PF00593 TonB dependent receptor Atu5311 PF07715 TonB-dependent Receptor Plug Domain Atu5312 PF01497 Periplasmic binding protein Atu5314 PF01032 FecCD transport family Atu5315 PF01032 FecCD transport family Atu5316 PF00005 ABC transporter Atu5322 PF03358 NADPH-dependent FMN reductase Atu5324 PF08240 Alcohol dehydrogenase GroES-like domain Atu5324 PF00107 Zinc-binding dehydrogenase Atu5325 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5325 PF03466 LysR substrate binding domain Atu5327 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5327 PF03466 LysR substrate binding domain Atu5328 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu5328 PF01842 ACT domain Atu5328 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu5329 PF03737 Aldolase/RraA Atu5332 PF01970 Tripartite tricarboxylate transporter TctA family Atu5333 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu5333 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu5334 PF13660 Domain of unknown function (DUF4147) Atu5334 PF05161 MOFRL family Atu5335 PF01070 FMN-dependent dehydrogenase Atu5338 PF02311 AraC-like ligand binding domain Atu5338 PF12833 Helix-turn-helix domain Atu5339 PF00892 EamA-like transporter family Atu5341 PF12833 Helix-turn-helix domain Atu5341 PF01965 DJ-1/PfpI family Atu5342 PF05853 beta-keto acid cleavage enzyme Atu5343 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu5344 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain Atu5344 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain Atu5346 PF00528 Binding-protein-dependent transport system inner membrane component Atu5346 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu5347 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu5347 PF00005 ABC transporter Atu5348 PF07859 alpha/beta hydrolase fold Atu5350 PF12728 Helix-turn-helix domain Atu5350 PF02661 Fic/DOC family Atu5352 PF13700 Domain of unknown function (DUF4158) Atu5352 PF01526 Tn3 transposase DDE domain Atu5353 PF13333 Integrase core domain Atu5353 PF00665 Integrase core domain Atu5353 PF13276 HTH-like domain Atu5353 PF01527 Transposase Atu5354 PF12951 Passenger-associated-transport-repeat Atu5358 PF01810 LysE type translocator Atu5359 PF07411 Domain of unknown function (DUF1508) Atu5361 PF00230 Major intrinsic protein Atu5365 PF12792 CSS motif domain associated with EAL Atu5365 PF00563 EAL domain Atu5367 PF05717 IS66 Orf2 like protein Atu5370 PF13333 Integrase core domain Atu5370 PF00665 Integrase core domain Atu5370 PF13276 HTH-like domain Atu5371 PF01527 Transposase Atu5372 PF00990 Diguanylate cyclase, GGDEF domain Atu5375 PF07536 HWE histidine kinase Atu5375 PF13581 Histidine kinase-like ATPase domain Atu5375 PF13426 PAS domain Atu5378 PF00072 Response regulator receiver domain Atu5380 PF13302 Acetyltransferase (GNAT) domain Atu5381 PF00873 AcrB/AcrD/AcrF family Atu5383 PF00440 Bacterial regulatory proteins, tetR family Atu5385 PF13784 Fic/DOC family N-terminal Atu5385 PF02661 Fic/DOC family Atu5386 PF00440 Bacterial regulatory proteins, tetR family Atu5389 PF00561 alpha/beta hydrolase fold Atu5390 PF01965 DJ-1/PfpI family Atu5390 PF12833 Helix-turn-helix domain Atu5392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5392 PF03466 LysR substrate binding domain Atu5393 PF00356 Bacterial regulatory proteins, lacI family Atu5394 PF00701 Dihydrodipicolinate synthetase family Atu5395 PF07690 Major Facilitator Superfamily Atu5398 PF00701 Dihydrodipicolinate synthetase family Atu5399 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu5399 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain Atu5399 PF01842 ACT domain Atu5400 PF17912 MalK OB fold domain Atu5400 PF00005 ABC transporter Atu5401 PF00528 Binding-protein-dependent transport system inner membrane component Atu5402 PF00528 Binding-protein-dependent transport system inner membrane component Atu5406 PF00392 Bacterial regulatory proteins, gntR family Atu5406 PF07729 FCD domain Atu5408 PF00528 Binding-protein-dependent transport system inner membrane component Atu5410 PF00005 ABC transporter Atu5410 PF08402 TOBE domain Atu5412 PF00528 Binding-protein-dependent transport system inner membrane component Atu5413 PF00528 Binding-protein-dependent transport system inner membrane component Atu5415 PF01613 Flavin reductase like domain Atu5419 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5419 PF03466 LysR substrate binding domain Atu5421 PF00528 Binding-protein-dependent transport system inner membrane component Atu5422 PF00528 Binding-protein-dependent transport system inner membrane component Atu5423 PF08402 TOBE domain Atu5423 PF00005 ABC transporter Atu5424 PF13454 FAD-NAD(P)-binding Atu5425 PF01323 DSBA-like thioredoxin domain Atu5428 PF01554 MatE Atu5433 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family Atu5433 PF00356 Bacterial regulatory proteins, lacI family Atu5434 PF01261 Xylose isomerase-like TIM barrel Atu5435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold Atu5435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain Atu5436 PF01261 Xylose isomerase-like TIM barrel Atu5437 PF01638 HxlR-like helix-turn-helix Atu5442 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu5442 PF00672 HAMP domain Atu5444 PF00106 short chain dehydrogenase Atu5445 PF00724 NADH:flavin oxidoreductase / NADH oxidase family Atu5446 PF00561 alpha/beta hydrolase fold Atu5447 PF00107 Zinc-binding dehydrogenase Atu5447 PF08240 Alcohol dehydrogenase GroES-like domain Atu5448 PF05406 WGR domain Atu5449 PF00011 Hsp20/alpha crystallin family Atu5452 PF00005 ABC transporter Atu5456 PF05035 2-keto-3-deoxy-galactonokinase Atu5457 PF00701 Dihydrodipicolinate synthetase family Atu5458 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu5458 PF13378 Enolase C-terminal domain-like Atu5460 PF00528 Binding-protein-dependent transport system inner membrane component Atu5461 PF00528 Binding-protein-dependent transport system inner membrane component Atu5462 PF17912 MalK OB fold domain Atu5462 PF00005 ABC transporter Atu5463 PF16363 GDP-mannose 4,6 dehydratase Atu5464 PF09339 IclR helix-turn-helix domain Atu5464 PF01614 Bacterial transcriptional regulator Atu5466 PF02705 K+ potassium transporter Atu5469 PF11799 impB/mucB/samB family C-terminal domain Atu5469 PF00817 impB/mucB/samB family Atu5473 PF01063 Amino-transferase class IV Atu5474 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain Atu5476 PF06418 CTP synthase N-terminus Atu5476 PF00117 Glutamine amidotransferase class-I Atu5477 PF00557 Metallopeptidase family M24 Atu5477 PF01321 Creatinase/Prolidase N-terminal domain Atu5478 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain Atu5478 PF13378 Enolase C-terminal domain-like Atu5479 PF01546 Peptidase family M20/M25/M40 Atu5479 PF07687 Peptidase dimerisation domain Atu5480 PF00005 ABC transporter Atu5481 PF00528 Binding-protein-dependent transport system inner membrane component Atu5483 PF00392 Bacterial regulatory proteins, gntR family Atu5483 PF07729 FCD domain Atu5490 PF08281 Sigma-70, region 4 Atu5490 PF04542 Sigma-70 region 2 Atu5491 PF18011 C-terminal domain found in long catalases Atu5491 PF06628 Catalase-related immune-responsive Atu5491 PF00199 Catalase Atu5494 PF05974 Domain of unknown function (DUF892) Atu5495 PF00561 alpha/beta hydrolase fold Atu5496 PF17925 Tetracyclin repressor-like, C-terminal domain Atu5496 PF00440 Bacterial regulatory proteins, tetR family Atu5497 PF02625 XdhC and CoxI family Atu5497 PF13478 XdhC Rossmann domain Atu5498 PF01799 [2Fe-2S] binding domain Atu5498 PF00111 2Fe-2S iron-sulfur cluster binding domain Atu5499 PF03450 CO dehydrogenase flavoprotein C-terminal domain Atu5499 PF00941 FAD binding domain in molybdopterin dehydrogenase Atu5500 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase Atu5500 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Atu5501 PF12804 MobA-like NTP transferase domain Atu5501 PF00132 Bacterial transferase hexapeptide (six repeats) Atu5505 PF00072 Response regulator receiver domain Atu5505 PF00486 Transcriptional regulatory protein, C terminal Atu5506 PF08918 PhoQ Sensor Atu5506 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu5509 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu5509 PF13426 PAS domain Atu5509 PF00072 Response regulator receiver domain Atu5510 PF06745 KaiC Atu5513 PF00313 'Cold-shock' DNA-binding domain Atu5514 PF00226 DnaJ domain Atu5520 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu5520 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Atu5521 PF00005 ABC transporter Atu5523 PF02653 Branched-chain amino acid transport system / permease component Atu5525 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu5525 PF00005 ABC transporter Atu5526 PF00296 Luciferase-like monooxygenase Atu5527 PF03358 NADPH-dependent FMN reductase Atu5528 PF13581 Histidine kinase-like ATPase domain Atu5528 PF07536 HWE histidine kinase Atu5528 PF13426 PAS domain Atu5531 PF13458 Periplasmic binding protein Atu5532 PF02653 Branched-chain amino acid transport system / permease component Atu5534 PF00005 ABC transporter Atu5534 PF12399 Branched-chain amino acid ATP-binding cassette transporter Atu5535 PF00005 ABC transporter Atu5535 PF09383 NIL domain Atu5536 PF00795 Carbon-nitrogen hydrolase Atu5537 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain Atu5537 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu5539 PF13533 Biotin-lipoyl like Atu5541 PF04632 Fusaric acid resistance protein family Atu5543 PF12833 Helix-turn-helix domain Atu5543 PF02311 AraC-like ligand binding domain Atu5546 PF03466 LysR substrate binding domain Atu5546 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu5547 PF00753 Metallo-beta-lactamase superfamily Atu6001 PF02027 RolB/RolC glucosidase family Atu6007 PF00106 short chain dehydrogenase Atu6007 PF00300 Histidine phosphatase superfamily (branch 1) Atu6009 PF02027 RolB/RolC glucosidase family Atu6010 PF01425 Amidase Atu6011 PF01593 Flavin containing amine oxidoreductase Atu6011 PF02027 RolB/RolC glucosidase family Atu6013 PF02027 RolB/RolC glucosidase family Atu6014 PF02027 RolB/RolC glucosidase family Atu6015 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Atu6015 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus Atu6016 PF02423 Ornithine cyclodeaminase/mu-crystallin family Atu6017 PF02317 NAD/NADP octopine/nopaline dehydrogenase, alpha-helical domain Atu6018 PF00491 Arginase family Atu6019 PF07992 Pyridine nucleotide-disulphide oxidoreductase Atu6019 PF04324 BFD-like [2Fe-2S] binding domain Atu6021 PF01266 FAD dependent oxidoreductase Atu6022 PF05378 Hydantoinase/oxoprolinase N-terminal region Atu6022 PF01968 Hydantoinase/oxoprolinase Atu6024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu6024 PF03466 LysR substrate binding domain Atu6025 PF00528 Binding-protein-dependent transport system inner membrane component Atu6026 PF00528 Binding-protein-dependent transport system inner membrane component Atu6027 PF00497 Bacterial extracellular solute-binding proteins, family 3 Atu6028 PF00005 ABC transporter Atu6029 PF03466 LysR substrate binding domain Atu6029 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu6031 PF03743 Bacterial conjugation TrbI-like protein Atu6033 PF03524 Conjugal transfer protein Atu6034 PF04335 VirB8 protein Atu6035 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Atu6036 PF10907 Protein of unknown function (DUF2749) Atu6038 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Atu6039 PF05101 Type IV secretory pathway, VirB3-like protein Atu6040 PF04956 TrbC/VIRB2 family Atu6041 PF00437 Type II/IV secretion system protein Atu6042 PF00765 Autoinducer synthase Atu6043 PF13614 AAA domain Atu6044 PF07506 RepB plasmid partitioning protein Atu6044 PF02195 ParB-like nuclease domain Atu6045 PF03428 Replication protein C N-terminal domain Atu6045 PF11800 Replication protein C C-terminal region Atu6046 PF00239 Resolvase, N terminal domain Atu6047 PF07756 Protein of unknown function (DUF1612) Atu6047 PF11972 HTH DNA binding domain Atu6051 PF08808 RES domain Atu6055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu6055 PF03466 LysR substrate binding domain Atu6057 PF00528 Binding-protein-dependent transport system inner membrane component Atu6058 PF00005 ABC transporter Atu6059 PF09084 NMT1/THI5 like Atu6060 PF00296 Luciferase-like monooxygenase Atu6063 PF00732 GMC oxidoreductase Atu6063 PF05199 GMC oxidoreductase Atu6064 PF00561 alpha/beta hydrolase fold Atu6068 PF02653 Branched-chain amino acid transport system / permease component Atu6069 PF00005 ABC transporter Atu6071 PF00753 Metallo-beta-lactamase superfamily Atu6072 PF02771 Acyl-CoA dehydrogenase, N-terminal domain Atu6072 PF02770 Acyl-CoA dehydrogenase, middle domain Atu6072 PF08028 Acyl-CoA dehydrogenase, C-terminal domain Atu6073 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu6074 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu6074 PF00005 ABC transporter Atu6076 PF00528 Binding-protein-dependent transport system inner membrane component Atu6078 PF00296 Luciferase-like monooxygenase Atu6080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu6080 PF03466 LysR substrate binding domain Atu6082 PF00004 ATPase family associated with various cellular activities (AAA) Atu6082 PF01434 Peptidase family M41 Atu6082 PF17862 AAA+ lid domain Atu6085 PF09084 NMT1/THI5 like Atu6086 PF00528 Binding-protein-dependent transport system inner membrane component Atu6087 PF00005 ABC transporter Atu6088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family Atu6088 PF03466 LysR substrate binding domain Atu6090 PF13298 DNA polymerase Ligase (LigD) Atu6090 PF01068 ATP dependent DNA ligase domain Atu6090 PF04679 ATP dependent DNA ligase C terminal region Atu6093 PF07733 Bacterial DNA polymerase III alpha NTPase domain Atu6093 PF02811 PHP domain Atu6093 PF17657 Bacterial DNA polymerase III alpha subunit finger domain Atu6093 PF14579 Helix-hairpin-helix motif Atu6097 PF02661 Fic/DOC family Atu6097 PF17841 BID domain of Bartonella effector protein (Bep) Atu6103 PF02195 ParB-like nuclease domain Atu6103 PF17762 HTH domain found in ParB protein Atu6108 PF03831 PhnA domain Atu6108 PF08274 PhnA Zinc-Ribbon Atu6112 PF05284 Protein of unknown function (DUF736) Atu6117 PF00293 NUDIX domain Atu6119 PF05284 Protein of unknown function (DUF736) Atu6120 PF00216 Bacterial DNA-binding protein Atu6124 PF02534 Type IV secretory system Conjugative DNA transfer Atu6125 PF06412 Conjugal transfer protein TraD Atu6126 PF07820 TraC-like protein Atu6127 PF03389 MobA/MobL family Atu6127 PF17841 BID domain of Bartonella effector protein (Bep) Atu6127 PF01443 Viral (Superfamily 1) RNA helicase Atu6128 PF10502 Signal peptidase, peptidase S26 Atu6129 PF00795 Carbon-nitrogen hydrolase Atu6130 PF06871 TraH_2 Atu6131 PF09228 Prokaryotic Transcriptional repressor TraM Atu6132 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain Atu6132 PF13426 PAS domain Atu6132 PF08447 PAS fold Atu6134 PF03472 Autoinducer binding domain Atu6134 PF00196 Bacterial regulatory proteins, luxR family Atu6135 PF00128 Alpha amylase, catalytic domain Atu6136 PF02690 Na+/Pi-cotransporter Atu6138 PF00455 DeoR C terminal sensor domain Atu6138 PF08220 DeoR-like helix-turn-helix domain Atu6139 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle Atu6140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu6140 PF00005 ABC transporter Atu6141 PF00005 ABC transporter Atu6141 PF08352 Oligopeptide/dipeptide transporter, C-terminal region Atu6142 PF00528 Binding-protein-dependent transport system inner membrane component Atu6143 PF12911 N-terminal TM domain of oligopeptide transport permease C Atu6143 PF00528 Binding-protein-dependent transport system inner membrane component Atu6144 PF03009 Glycerophosphoryl diester phosphodiesterase family Atu6145 PF00459 Inositol monophosphatase family Atu6148 PF00665 Integrase core domain Atu6150 PF00067 Cytochrome P450 Atu6151 PF00067 Cytochrome P450 Atu6152 PF01548 Transposase Atu6152 PF02371 Transposase IS116/IS110/IS902 family Atu6156 PF06903 VirK protein Atu6166 PF00512 His Kinase A (phospho-acceptor) domain Atu6166 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase Atu6167 PF01464 Transglycosylase SLT domain Atu6168 PF04956 TrbC/VIRB2 family Atu6169 PF05101 Type IV secretory pathway, VirB3-like protein Atu6170 PF03135 CagE, TrbE, VirB family, component of type IV transporter system Atu6172 PF04610 TrbL/VirB6 plasmid conjugal transfer protein Atu6173 PF17413 Outer membrane lipoprotein virB7 Atu6174 PF04335 VirB8 protein Atu6175 PF03524 Conjugal transfer protein Atu6176 PF03743 Bacterial conjugation TrbI-like protein Atu6177 PF00437 Type II/IV secretion system protein Atu6178 PF00486 Transcriptional regulatory protein, C terminal Atu6178 PF00072 Response regulator receiver domain Atu6179 PF07181 VirC2 protein Atu6180 PF07015 VirC1 protein Atu6181 PF07328 T-DNA border endonuclease VirD1 Atu6182 PF03432 Relaxase/Mobilisation nuclease domain Atu6184 PF02534 Type IV secretory system Conjugative DNA transfer Atu6189 PF12189 Single-strand DNA-binding protein Atu6190 PF07229 VirE2 Atu6196 PF00459 Inositol monophosphatase family Atu8036 PF08173 Membrane bound YbgT-like protein Atu8065 PF00327 Ribosomal protein L30p/L7e Atu8066 PF00468 Ribosomal protein L34 Atu8067 PF00444 Ribosomal protein L36 Atu8092 PF10755 Protein of unknown function (DUF2585) Atu8096 PF05532 CsbD-like Atu8097 PF13229 Right handed beta helix region Atu8097 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) Atu8097 PF12708 Pectate lyase superfamily protein Atu8131 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus Atu8131 PF00361 Proton-conducting membrane transporter Atu8131 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter Atu8131 PF13244 Domain of unknown function (DUF4040) Atu8143 PF06629 MltA-interacting protein MipA Atu8147 PF01476 LysM domain Atu8148 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region Atu8148 PF01872 RibD C-terminal domain Atu8162 PF00550 Phosphopantetheine attachment site Atu8165 PF08755 Hemimethylated DNA-binding protein YccV like