Atu0005 SM00479 Atu0005 Atu0008 SM00978 Atu0008 Atu0009 SM00925 MltA specific insert domain Atu0010 SM00463 Small MutS-related domain Atu0011 SM00530 Helix-turn-helix XRE-family like proteins Atu0012 SM00387 Histidine kinase-like ATPases Atu0012 SM00433 TopoisomeraseII Atu0027 SM00387 Histidine kinase-like ATPases Atu0027 SM00388 His Kinase A (phosphoacceptor) domain Atu0029 SM00996 S-adenosyl-L-homocysteine hydrolase Atu0029 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Atu0033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0033 SM00387 Histidine kinase-like ATPases Atu0033 SM00388 His Kinase A (phosphoacceptor) domain Atu0034 SM00448 cheY-homologous receiver domain Atu0034 SM00862 Transcriptional regulatory protein, C terminal Atu0045 SM00382 ATPases associated with a variety of cellular activities Atu0045 SM01086 C-terminal, D2-small domain, of ClpB protein Atu0050 SM00448 cheY-homologous receiver domain Atu0051 SM00387 Histidine kinase-like ATPases Atu0051 SM00388 His Kinase A (phosphoacceptor) domain Atu0052 SM00487 DEAD-like helicases superfamily Atu0052 SM00490 helicase superfamily c-terminal domain Atu0052 SM00847 Helicase associated domain (HA2) Add an annotation Atu0061 SM00341 Helicase and RNase D C-terminal Atu0061 SM00487 DEAD-like helicases superfamily Atu0061 SM00490 helicase superfamily c-terminal domain Atu0061 SM00956 Atu0061 Atu0065 SM00382 ATPases associated with a variety of cellular activities Atu0073 SM00382 ATPases associated with a variety of cellular activities Atu0078 SM00287 Bacterial SH3 domain homologues Atu0082 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0082 SM00322 K homology RNA-binding domain Atu0084 SM01387 Atu0084 Atu0089 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0089 SM00322 K homology RNA-binding domain Atu0093 SM00493 Atu0093 Atu0096 SM00382 ATPases associated with a variety of cellular activities Atu0106 SM00357 Cold shock protein domain Atu0109 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0110 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs Atu0110 SM00474 3'-5' exonuclease Atu0110 SM00475 5'-3' exonuclease Atu0110 SM00479 Atu0110 Atu0110 SM00482 DNA polymerase A domain Atu0113 SM00387 Histidine kinase-like ATPases Atu0113 SM00388 His Kinase A (phosphoacceptor) domain Atu0114 SM00382 ATPases associated with a variety of cellular activities Atu0114 SM00448 cheY-homologous receiver domain Atu0121 SM00271 DnaJ molecular chaperone homology domain Atu0127 SM00382 ATPases associated with a variety of cellular activities Atu0132 SM01133 Atu0132 Atu0133 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain Atu0150 SM00825 Beta-ketoacyl synthase Atu0157 SM00062 Bacterial periplasmic substrate-binding proteins Atu0159 SM00382 ATPases associated with a variety of cellular activities Atu0160 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0160 SM00866 Atu0160 Atu0165 SM00421 helix_turn_helix, Lux Regulon Atu0167 SM00342 helix_turn_helix, arabinose operon control protein Atu0168 SM00072 Guanylate kinase homologues. Atu0174 SM00382 ATPases associated with a variety of cellular activities Atu0176 SM00382 ATPases associated with a variety of cellular activities Atu0177 SM00382 ATPases associated with a variety of cellular activities Atu0182 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0182 SM00866 Atu0182 Atu0185 SM00851 MGS-like domain Atu0190 SM00382 ATPases associated with a variety of cellular activities Atu0193 SM01230 Atu0193 Atu0197 SM00382 ATPases associated with a variety of cellular activities Atu0210 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0215 SM00028 Tetratricopeptide repeats Atu0222 SM00858 Atu0222 Atu0233 SM00641 Glycosyl hydrolases family 25 Atu0235 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0239 SM00342 helix_turn_helix, arabinose operon control protein Atu0245 SM00530 Helix-turn-helix XRE-family like proteins Atu0248 SM00342 helix_turn_helix, arabinose operon control protein Atu0259 SM00873 B3/4 domain Atu0259 SM00874 tRNA synthetase B5 domain Atu0259 SM00896 Ferredoxin-fold anticodon binding domain Atu0264 SM00342 helix_turn_helix, arabinose operon control protein Atu0270 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu0271 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0271 SM00895 Atu0271 Atu0272 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0298 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family Atu0301 SM00480 DNA polymerase III beta subunit Atu0304 SM01266 Atu0304 Atu0308 SM00382 ATPases associated with a variety of cellular activities Atu0311 SM00382 ATPases associated with a variety of cellular activities Atu0321 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain Atu0321 SM01232 Atu0321 Atu0324 SM00382 ATPases associated with a variety of cellular activities Atu0324 SM00760 Bacterial dnaA protein helix-turn-helix domain Atu0325 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0333 SM00382 ATPases associated with a variety of cellular activities Atu0338 SM00411 bacterial (prokaryotic) histone like domain Atu0341 SM00967 RNA 2'-O ribose methyltransferase substrate binding Atu0343 SM00387 Histidine kinase-like ATPases Atu0343 SM00388 His Kinase A (phosphoacceptor) domain Atu0343 SM00448 cheY-homologous receiver domain Atu0345 SM00533 DNA-binding domain of DNA mismatch repair MUTS family Atu0345 SM00534 ATPase domain of DNA mismatch repair MUTS family Atu0346 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu0351 SM00932 Scaffold protein Nfu/NifU N terminal Atu0355 SM00563 Phosphate acyltransferases Atu0356 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0359 SM01091 Transporter associated domain Atu0361 SM00530 Helix-turn-helix XRE-family like proteins Atu0373 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0373 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0387 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0387 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0388 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0388 SM00387 Histidine kinase-like ATPases Atu0391 SM00382 ATPases associated with a variety of cellular activities Atu0406 SM00382 ATPases associated with a variety of cellular activities Atu0410 SM00342 helix_turn_helix, arabinose operon control protein Atu0419 SM00387 Histidine kinase-like ATPases Atu0419 SM00388 His Kinase A (phosphoacceptor) domain Atu0423 SM00382 ATPases associated with a variety of cellular activities Atu0425 SM00448 cheY-homologous receiver domain Atu0425 SM00862 Transcriptional regulatory protein, C terminal Atu0443 SM00530 Helix-turn-helix XRE-family like proteins Atu0450 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Atu0465 SM00530 Helix-turn-helix XRE-family like proteins Atu0472 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. Atu0479 SM00062 Bacterial periplasmic substrate-binding proteins Atu0484 SM00421 helix_turn_helix, Lux Regulon Atu0484 SM00448 cheY-homologous receiver domain Atu0494 SM00487 DEAD-like helicases superfamily Atu0494 SM00490 helicase superfamily c-terminal domain Atu0499 SM00671 Sel1-like repeats. Atu0514 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0516 SM00448 cheY-homologous receiver domain Atu0517 SM00073 Histidine Phosphotransfer domain Atu0517 SM00260 Two component signalling adaptor domain Atu0517 SM00387 Histidine kinase-like ATPases Atu0517 SM01231 Atu0517 Atu0518 SM00138 Methyltransferase, chemotaxis proteins Atu0519 SM00448 cheY-homologous receiver domain Atu0520 SM00448 cheY-homologous receiver domain Atu0524 SM00421 helix_turn_helix, Lux Regulon Atu0525 SM00421 helix_turn_helix, Lux Regulon Atu0526 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0526 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0527 SM00387 Histidine kinase-like ATPases Atu0527 SM00388 His Kinase A (phosphoacceptor) domain Atu0527 SM00448 cheY-homologous receiver domain Atu0535 SM00226 Low molecular weight phosphatase family Atu0551 SM00858 Atu0551 Atu0557 SM00382 ATPases associated with a variety of cellular activities Atu0573 SM00862 Transcriptional regulatory protein, C terminal Atu0590 SM00354 helix_turn _helix lactose operon repressor Atu0594 SM00642 Alpha-amylase domain Atu0595 SM00382 ATPases associated with a variety of cellular activities Atu0602 SM01230 Atu0602 Atu0608 SM00530 Helix-turn-helix XRE-family like proteins Atu0610 SM00382 ATPases associated with a variety of cellular activities Atu0614 SM00091 PAS domain Atu0614 SM00387 Histidine kinase-like ATPases Atu0614 SM00388 His Kinase A (phosphoacceptor) domain Atu0622 SM00849 Metallo-beta-lactamase superfamily Atu0624 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu0624 SM01240 Atu0624 Atu0626 SM00829 Enoylreductase Atu0628 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0628 SM00387 Histidine kinase-like ATPases Atu0629 SM00448 cheY-homologous receiver domain Atu0629 SM00862 Transcriptional regulatory protein, C terminal Atu0631 SM00852 Probable molybdopterin binding domain Atu0633 SM00028 Tetratricopeptide repeats Atu0646 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0646 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0646 SM01049 Atu0646 Atu0647 SM01209 Atu0647 Atu0647 SM01210 Atu0647 Atu0648 SM00316 Ribosomal protein S1-like RNA-binding domain Atu0648 SM00732 Likely ribonuclease with RNase H fold. Atu0662 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0662 SM00895 Atu0662 Atu0683 SM00883 Chaperonin 10 Kd subunit Atu0685 SM00904 Riboflavin kinase Atu0689 SM00363 S4 RNA-binding domain Atu0699 SM00853 MutL C terminal dimerisation domain Atu0699 SM01340 Atu0699 Atu0700 SM00448 cheY-homologous receiver domain Atu0701 SM00052 Putative diguanylate phosphodiesterase Atu0701 SM00267 diguanylate cyclase Atu0706 SM00346 helix_turn_helix isocitrate lyase regulation Atu0707 SM00421 helix_turn_helix, Lux Regulon Atu0721 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu0736 SM00363 S4 RNA-binding domain Atu0738 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0738 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0740 SM00344 helix_turn_helix ASNC type Atu0743 SM00530 Helix-turn-helix XRE-family like proteins Atu0745 SM00861 Transketolase, pyrimidine binding domain Atu0751 SM00382 ATPases associated with a variety of cellular activities Atu0756 SM00855 Phosphoglycerate mutase family Atu0758 SM00271 DnaJ molecular chaperone homology domain Atu0777 SM00886 Stress responsive A/B Barrel Domain Atu0778 SM00869 Autotransporter beta-domain Atu0784 SM00052 Putative diguanylate phosphodiesterase Atu0784 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu0784 SM00267 diguanylate cyclase Atu0791 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu0791 SM00895 Atu0791 Atu0798 SM00478 endonuclease III Atu0801 SM00968 SMC proteins Flexible Hinge Domain Atu0807 SM00849 Metallo-beta-lactamase superfamily Atu0823 SM00382 ATPases associated with a variety of cellular activities Atu0825 SM00829 Enoylreductase Atu0826 SM00052 Putative diguanylate phosphodiesterase Atu0826 SM00267 diguanylate cyclase Atu0837 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0846 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0849 SM00953 Atu0849 Atu0850 SM00382 ATPases associated with a variety of cellular activities Atu0852 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu0857 SM00822 Atu0857 Atu0864 SM00822 Atu0864 Atu0865 SM00342 helix_turn_helix, arabinose operon control protein Atu0872 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu0872 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0888 SM00422 helix_turn_helix, mercury resistance Atu0893 SM00382 ATPases associated with a variety of cellular activities Atu0899 SM01130 Atu0899 Atu0901 SM00342 helix_turn_helix, arabinose operon control protein Atu0917 SM00760 Bacterial dnaA protein helix-turn-helix domain Atu0921 SM00387 Histidine kinase-like ATPases Atu0921 SM00388 His Kinase A (phosphoacceptor) domain Atu0938 SM00422 helix_turn_helix, mercury resistance Atu0939 SM00966 SpoVT / AbrB like domain Atu0944 SM00640 Glycosyl hydrolases family 32 Atu0947 SM00344 helix_turn_helix ASNC type Atu0953 SM00886 Stress responsive A/B Barrel Domain Atu0970 SM00448 cheY-homologous receiver domain Atu0970 SM00862 Transcriptional regulatory protein, C terminal Atu0971 SM00387 Histidine kinase-like ATPases Atu0971 SM00388 His Kinase A (phosphoacceptor) domain Atu0977 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu0978 SM00448 cheY-homologous receiver domain Atu0978 SM00862 Transcriptional regulatory protein, C terminal Atu0979 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu0979 SM00387 Histidine kinase-like ATPases Atu0979 SM00388 His Kinase A (phosphoacceptor) domain Atu0982 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu0982 SM00387 Histidine kinase-like ATPases Atu0982 SM00388 His Kinase A (phosphoacceptor) domain Atu0987 SM00986 Uracil DNA glycosylase superfamily Atu0987 SM00987 UreE urease accessory protein, C-terminal domain Atu0989 SM00267 diguanylate cyclase Atu0996 SM00829 Enoylreductase Atu0999 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu0999 SM00924 MgtE intracellular N domain Atu1001 SM00046 Diacylglycerol kinase catalytic domain (presumed) Atu1024 SM01130 Atu1024 Atu1027 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu1029 SM01409 Atu1029 Atu1030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1030 SM00954 Region found in RelA / SpoT proteins Atu1035 SM00358 Double-stranded RNA binding motif Atu1035 SM00535 Ribonuclease III family Atu1037 SM00419 helix_turn_helix, cAMP Regulatory protein Atu1038 SM00448 cheY-homologous receiver domain Atu1043 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1047 SM00382 ATPases associated with a variety of cellular activities Atu1060 SM00267 diguanylate cyclase Atu1060 SM00448 cheY-homologous receiver domain Atu1064 SM00382 ATPases associated with a variety of cellular activities Atu1077 SM00382 ATPases associated with a variety of cellular activities Atu1080 SM01005 Alanine racemase, C-terminal domain Atu1081 SM00342 helix_turn_helix, arabinose operon control protein Atu1084 SM00382 ATPases associated with a variety of cellular activities Atu1085 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1094 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Atu1095 SM00822 Atu1095 Atu1096 SM00823 Phosphopantetheine attachment site Atu1097 SM00825 Beta-ketoacyl synthase Atu1101 SM00072 Guanylate kinase homologues. Atu1103 SM00650 Ribosomal RNA adenine dimethylases Atu1112 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu1112 SM00267 diguanylate cyclase Atu1114 SM00052 Putative diguanylate phosphodiesterase Atu1114 SM00267 diguanylate cyclase Atu1115 SM00387 Histidine kinase-like ATPases Atu1115 SM00388 His Kinase A (phosphoacceptor) domain Atu1116 SM00421 helix_turn_helix, Lux Regulon Atu1116 SM00448 cheY-homologous receiver domain Atu1118 SM00382 ATPases associated with a variety of cellular activities Atu1119 SM00267 diguanylate cyclase Atu1122 SM00562 Atu1122 Atu1129 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Atu1129 SM00465 GIY-YIG type nucleases (URI domain) Atu1136 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Atu1149 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Atu1151 SM00474 3'-5' exonuclease Atu1158 SM00434 DNA Topoisomerase IV Atu1161 SM01004 Delta-aminolevulinic acid dehydratase Atu1163 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1180 SM00411 bacterial (prokaryotic) histone like domain Atu1181 SM00422 helix_turn_helix, mercury resistance Atu1183 SM01311 Atu1183 Atu1197 SM00422 helix_turn_helix, mercury resistance Atu1200 SM00382 ATPases associated with a variety of cellular activities Atu1201 SM00382 ATPases associated with a variety of cellular activities Atu1207 SM00267 diguanylate cyclase Atu1215 SM00450 Rhodanese Homology Domain Atu1216 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1244 SM00859 Semialdehyde dehydrogenase, NAD binding domain Atu1250 SM00881 CoA binding domain Atu1254 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1255 SM00822 Atu1255 Atu1257 SM00267 diguanylate cyclase Atu1259 SM00382 ATPases associated with a variety of cellular activities Atu1259 SM00994 ClpX C4-type zinc finger Atu1259 SM01086 C-terminal, D2-small domain, of ClpB protein Atu1261 SM00382 ATPases associated with a variety of cellular activities Atu1261 SM00464 Found in ATP-dependent protease La (LON) Atu1262 SM00411 bacterial (prokaryotic) histone like domain Atu1275 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Atu1276 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Atu1285 SM00849 Metallo-beta-lactamase superfamily Atu1290 SM00382 ATPases associated with a variety of cellular activities Atu1292 SM00481 DNA polymerase alpha chain like domain Atu1296 SM00448 cheY-homologous receiver domain Atu1297 SM00267 diguanylate cyclase Atu1297 SM00448 cheY-homologous receiver domain Atu1303 SM00316 Ribosomal protein S1-like RNA-binding domain Atu1303 SM00955 Atu1303 Atu1304 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain Atu1304 SM00437 Bacterial DNA topoisomerase I DNA-binding domain Atu1304 SM00493 Atu1304 Atu1306 SM01207 Atu1306 Atu1316 SM00732 Likely ribonuclease with RNase H fold. Atu1317 SM00849 Metallo-beta-lactamase superfamily Atu1324 SM00845 GatB domain Atu1330 SM00878 Biotin carboxylase C-terminal domain Atu1335 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1340 SM00646 Atu1340 Atu1342 SM00937 Atu1342 Atu1347 SM00889 Elongation factor G, domain IV Atu1353 SM00905 Dihydroneopterin aldolase Atu1358 SM00855 Phosphoglycerate mutase family Atu1362 SM00091 PAS domain Atu1362 SM00387 Histidine kinase-like ATPases Atu1362 SM00388 His Kinase A (phosphoacceptor) domain Atu1362 SM00448 cheY-homologous receiver domain Atu1364 SM00382 ATPases associated with a variety of cellular activities Atu1364 SM01086 C-terminal, D2-small domain, of ClpB protein Atu1380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu1387 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1387 SM00895 Atu1387 Atu1388 SM00062 Bacterial periplasmic substrate-binding proteins Atu1391 SM00382 ATPases associated with a variety of cellular activities Atu1396 SM00382 ATPases associated with a variety of cellular activities Atu1399 SM00062 Bacterial periplasmic substrate-binding proteins Atu1400 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain Atu1401 SM00382 ATPases associated with a variety of cellular activities Atu1405 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1406 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu1408 SM00829 Enoylreductase Atu1410 SM00382 ATPases associated with a variety of cellular activities Atu1411 SM00382 ATPases associated with a variety of cellular activities Atu1419 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1419 SM00895 Atu1419 Atu1422 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu1426 SM01192 Atu1426 Atu1426 SM01193 Atu1426 Atu1430 SM00861 Transketolase, pyrimidine binding domain Atu1436 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1438 SM00342 helix_turn_helix, arabinose operon control protein Atu1445 SM00387 Histidine kinase-like ATPases Atu1445 SM00388 His Kinase A (phosphoacceptor) domain Atu1446 SM00382 ATPases associated with a variety of cellular activities Atu1446 SM00448 cheY-homologous receiver domain Atu1447 SM00091 PAS domain Atu1447 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu1447 SM00387 Histidine kinase-like ATPases Atu1447 SM00388 His Kinase A (phosphoacceptor) domain Atu1448 SM00382 ATPases associated with a variety of cellular activities Atu1448 SM00448 cheY-homologous receiver domain Atu1487 SM00867 YceI-like domain Atu1492 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1494 SM00849 Metallo-beta-lactamase superfamily Atu1499 SM00936 Penicillin-binding protein 5, C-terminal domain Atu1507 SM00434 DNA Topoisomerase IV Atu1509 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1520 SM00382 ATPases associated with a variety of cellular activities Atu1522 SM00354 helix_turn _helix lactose operon repressor Atu1526 SM01350 Atu1526 Atu1546 SM00422 helix_turn_helix, mercury resistance Atu1547 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1547 SM00924 MgtE intracellular N domain Atu1557 SM00829 Enoylreductase Atu1563 SM01323 Atu1563 Atu1571 SM00971 Serine acetyltransferase, N-terminal Atu1577 SM00062 Bacterial periplasmic substrate-binding proteins Atu1580 SM00382 ATPases associated with a variety of cellular activities Atu1595 SM00829 Enoylreductase Atu1596 SM00825 Beta-ketoacyl synthase Atu1601 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1602 SM00100 Cyclic nucleotide-monophosphate binding domain Atu1602 SM00419 helix_turn_helix, cAMP Regulatory protein Atu1622 SM00387 Histidine kinase-like ATPases Atu1622 SM00433 TopoisomeraseII Atu1629 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu1630 SM00155 Phospholipase D. Active site motifs. Atu1631 SM00448 cheY-homologous receiver domain Atu1646 SM00382 ATPases associated with a variety of cellular activities Atu1648 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu1652 SM00919 Malic enzyme, NAD binding domain Atu1652 SM01274 Atu1652 Atu1675 SM00421 helix_turn_helix, Lux Regulon Atu1690 SM00852 Probable molybdopterin binding domain Atu1691 SM00267 diguanylate cyclase Atu1695 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu1700 SM00257 Lysin motif Atu1711 SM00836 DALR anticodon binding domain Atu1711 SM01016 Arginyl tRNA synthetase N terminal dom Atu1712 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu1715 SM00671 Sel1-like repeats. Atu1729 SM00852 Probable molybdopterin binding domain Atu1735 SM00530 Helix-turn-helix XRE-family like proteins Atu1738 SM00382 ATPases associated with a variety of cellular activities Atu1743 SM00903 Flavin reductase like domain Atu1746 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1747 SM01234 Atu1747 Atu1752 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu1767 SM00342 helix_turn_helix, arabinose operon control protein Atu1769 SM00938 Nitrogen regulatory protein P-II Atu1770 SM01230 Atu1770 Atu1778 SM00487 DEAD-like helicases superfamily Atu1778 SM00490 helicase superfamily c-terminal domain Atu1778 SM00982 Atu1778 Atu1778 SM01058 CarD-like/TRCF domain Atu1780 SM00487 DEAD-like helicases superfamily Atu1780 SM00490 helicase superfamily c-terminal domain Atu1788 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1788 SM00895 Atu1788 Atu1792 SM00382 ATPases associated with a variety of cellular activities Atu1798 SM00248 ankyrin repeats Atu1803 SM00357 Cold shock protein domain Atu1816 SM00382 ATPases associated with a variety of cellular activities Atu1823 SM00382 ATPases associated with a variety of cellular activities Atu1833 SM00487 DEAD-like helicases superfamily Atu1833 SM00490 helicase superfamily c-terminal domain Atu1837 SM00530 Helix-turn-helix XRE-family like proteins Atu1841 SM00998 Adenylosuccinate lyase C-terminus Atu1845 SM01211 Atu1845 Atu1848 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu1860 SM00363 S4 RNA-binding domain Atu1860 SM01390 Atu1860 Atu1862 SM00382 ATPases associated with a variety of cellular activities Atu1870 SM01329 Atu1870 Atu1873 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain Atu1874 SM00382 ATPases associated with a variety of cellular activities Atu1879 SM00062 Bacterial periplasmic substrate-binding proteins Atu1879 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Atu1883 SM00028 Tetratricopeptide repeats Atu1884 SM00062 Bacterial periplasmic substrate-binding proteins Atu1885 SM00344 helix_turn_helix ASNC type Atu1886 SM00986 Uracil DNA glycosylase superfamily Atu1886 SM00987 UreE urease accessory protein, C-terminal domain Atu1887 SM00318 Staphylococcal nuclease homologues Atu1888 SM00387 Histidine kinase-like ATPases Atu1888 SM00388 His Kinase A (phosphoacceptor) domain Atu1898 SM00382 ATPases associated with a variety of cellular activities Atu1902 SM00861 Transketolase, pyrimidine binding domain Atu1907 SM00382 ATPases associated with a variety of cellular activities Atu1912 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu1912 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu1912 SM01049 Atu1912 Atu1914 SM00382 ATPases associated with a variety of cellular activities Atu1915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu1923 SM00662 RNA polymerases D Atu1935 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Atu1936 SM01374 Atu1936 Atu1940 SM00322 K homology RNA-binding domain Atu1943 SM01382 Atu1943 Atu1943 SM01383 Atu1943 Atu1947 SM01403 Atu1947 Atu1949 SM00838 Elongation factor G C-terminus Atu1949 SM00889 Elongation factor G, domain IV Atu1954 SM00421 helix_turn_helix, Lux Regulon Atu1955 SM00663 RNA polymerase I subunit A N-terminus Atu1960 SM00649 Ribosomal protein L11/L12 Atu1961 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. Atu1961 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. Atu1984 SM00387 Histidine kinase-like ATPases Atu1984 SM00448 cheY-homologous receiver domain Atu1985 SM00448 cheY-homologous receiver domain Atu1986 SM00387 Histidine kinase-like ATPases Atu1987 SM00448 cheY-homologous receiver domain Atu1988 SM00448 cheY-homologous receiver domain Atu1988 SM00911 HWE histidine kinase Atu1989 SM00448 cheY-homologous receiver domain Atu1990 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu1990 SM00387 Histidine kinase-like ATPases Atu1990 SM00388 His Kinase A (phosphoacceptor) domain Atu1993 SM00967 RNA 2'-O ribose methyltransferase substrate binding Atu2001 SM00487 DEAD-like helicases superfamily Atu2001 SM00490 helicase superfamily c-terminal domain Atu2006 SM00271 DnaJ molecular chaperone homology domain Atu2010 SM00267 diguanylate cyclase Atu2012 SM00382 ATPases associated with a variety of cellular activities Atu2021 SM00342 helix_turn_helix, arabinose operon control protein Atu2022 SM00829 Enoylreductase Atu2025 SM00421 helix_turn_helix, Lux Regulon Atu2025 SM00422 helix_turn_helix, mercury resistance Atu2028 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2034 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2042 SM00822 Atu2042 Atu2043 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu2044 SM00244 prohibitin homologues Atu2045 SM00244 prohibitin homologues Atu2075 SM00260 Two component signalling adaptor domain Atu2077 SM00479 Atu2077 Atu2082 SM00278 Helix-hairpin-helix DNA-binding motif class 1 Atu2082 SM00292 breast cancer carboxy-terminal domain Atu2082 SM00532 Ligase N family Atu2086 SM00864 Tubulin/FtsZ family, GTPase domain Atu2086 SM00865 Tubulin/FtsZ family, C-terminal domain Atu2087 SM00842 Cell division protein FtsA Atu2091 SM00267 diguanylate cyclase Atu2113 SM00644 Atu2113 Atu2114 SM00271 DnaJ molecular chaperone homology domain Atu2121 SM00641 Glycosyl hydrolases family 25 Atu2124 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2125 SM00382 ATPases associated with a variety of cellular activities Atu2141 SM00530 Helix-turn-helix XRE-family like proteins Atu2142 SM01230 Atu2142 Atu2150 SM00382 ATPases associated with a variety of cellular activities Atu2151 SM00829 Enoylreductase Atu2153 SM00382 ATPases associated with a variety of cellular activities Atu2155 SM01018 B12 binding domain Atu2165 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu2165 SM00448 cheY-homologous receiver domain Atu2165 SM00911 HWE histidine kinase Atu2168 SM00400 zinc finger Atu2168 SM00493 Atu2168 Atu2170 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain Atu2173 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2173 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2177 SM00850 LytTr DNA-binding domain Atu2178 SM00851 MGS-like domain Atu2178 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain Atu2179 SM00267 diguanylate cyclase Atu2180 SM00986 Uracil DNA glycosylase superfamily Atu2180 SM00987 UreE urease accessory protein, C-terminal domain Atu2181 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu2184 SM00344 helix_turn_helix ASNC type Atu2187 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2197 SM00052 Putative diguanylate phosphodiesterase Atu2200 SM00357 Cold shock protein domain Atu2201 SM00849 Metallo-beta-lactamase superfamily Atu2205 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2206 SM00448 cheY-homologous receiver domain Atu2206 SM00862 Transcriptional regulatory protein, C terminal Atu2207 SM00387 Histidine kinase-like ATPases Atu2207 SM00388 His Kinase A (phosphoacceptor) domain Atu2218 SM01400 Atu2218 Atu2221 SM01259 Atu2221 Atu2223 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2223 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2226 SM00052 Putative diguanylate phosphodiesterase Atu2226 SM00267 diguanylate cyclase Atu2228 SM00052 Putative diguanylate phosphodiesterase Atu2228 SM00091 PAS domain Atu2228 SM00267 diguanylate cyclase Atu2228 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2241 SM00382 ATPases associated with a variety of cellular activities Atu2242 SM00382 ATPases associated with a variety of cellular activities Atu2264 SM00917 LeuA allosteric (dimerisation) domain Atu2278 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu2279 SM00382 ATPases associated with a variety of cellular activities Atu2285 SM00421 helix_turn_helix, Lux Regulon Atu2291 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. Atu2295 SM00642 Alpha-amylase domain Atu2309 SM01092 CO dehydrogenase flavoprotein C-terminal domain Atu2310 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Atu2332 SM00091 PAS domain Atu2332 SM00387 Histidine kinase-like ATPases Atu2332 SM00388 His Kinase A (phosphoacceptor) domain Atu2332 SM00448 cheY-homologous receiver domain Atu2333 SM00487 DEAD-like helicases superfamily Atu2333 SM00490 helicase superfamily c-terminal domain Atu2340 SM00460 Transglutaminase/protease-like homologues Atu2347 SM00382 ATPases associated with a variety of cellular activities Atu2354 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2365 SM00062 Bacterial periplasmic substrate-binding proteins Atu2366 SM00382 ATPases associated with a variety of cellular activities Atu2371 SM00633 Glycosyl hydrolase family 10 Atu2388 SM00382 ATPases associated with a variety of cellular activities Atu2394 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2394 SM00419 helix_turn_helix, cAMP Regulatory protein Atu2395 SM00849 Metallo-beta-lactamase superfamily Atu2398 SM00988 UreE urease accessory protein, N-terminal domain Atu2410 SM00382 ATPases associated with a variety of cellular activities Atu2416 SM01230 Atu2416 Atu2418 SM00387 Histidine kinase-like ATPases Atu2418 SM00388 His Kinase A (phosphoacceptor) domain Atu2418 SM00448 cheY-homologous receiver domain Atu2419 SM00421 helix_turn_helix, Lux Regulon Atu2419 SM00448 cheY-homologous receiver domain Atu2424 SM00382 ATPases associated with a variety of cellular activities Atu2425 SM00382 ATPases associated with a variety of cellular activities Atu2434 SM00448 cheY-homologous receiver domain Atu2434 SM00862 Transcriptional regulatory protein, C terminal Atu2443 SM00363 S4 RNA-binding domain Atu2447 SM00788 Adenylosuccinate synthetase Atu2455 SM00986 Uracil DNA glycosylase superfamily Atu2455 SM00987 UreE urease accessory protein, C-terminal domain Atu2458 SM00382 ATPases associated with a variety of cellular activities Atu2465 SM00387 Histidine kinase-like ATPases Atu2465 SM00388 His Kinase A (phosphoacceptor) domain Atu2466 SM00448 cheY-homologous receiver domain Atu2466 SM00862 Transcriptional regulatory protein, C terminal Atu2476 SM00382 ATPases associated with a variety of cellular activities Atu2486 SM00155 Phospholipase D. Active site motifs. Atu2488 SM00947 Carbonic anhydrase Atu2490 SM00859 Semialdehyde dehydrogenase, NAD binding domain Atu2493 SM01002 Alanine dehydrogenase/PNT, C-terminal domain Atu2493 SM01003 Alanine dehydrogenase/PNT, N-terminal domain Atu2495 SM00903 Flavin reductase like domain Atu2503 SM01130 Atu2503 Atu2504 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2504 SM00895 Atu2504 Atu2508 SM00382 ATPases associated with a variety of cellular activities Atu2514 SM00382 ATPases associated with a variety of cellular activities Atu2515 SM00382 ATPases associated with a variety of cellular activities Atu2531 SM00903 Flavin reductase like domain Atu2532 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2535 SM00387 Histidine kinase-like ATPases Atu2535 SM00388 His Kinase A (phosphoacceptor) domain Atu2536 SM00448 cheY-homologous receiver domain Atu2536 SM00862 Transcriptional regulatory protein, C terminal Atu2553 SM00841 Elongation factor P, C-terminal Atu2553 SM01185 Atu2553 Atu2563 SM00382 ATPases associated with a variety of cellular activities Atu2578 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2579 SM00849 Metallo-beta-lactamase superfamily Atu2580 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Atu2582 SM00984 UDP binding domain Atu2586 SM00382 ATPases associated with a variety of cellular activities Atu2600 SM00382 ATPases associated with a variety of cellular activities Atu2606 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2606 SM00866 Atu2606 Atu2611 SM00014 Acid phosphatase homologues Atu2617 SM00260 Two component signalling adaptor domain Atu2618 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu2618 SM00091 PAS domain Atu2618 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu2618 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu2622 SM00382 ATPases associated with a variety of cellular activities Atu2627 SM00487 DEAD-like helicases superfamily Atu2627 SM00490 helicase superfamily c-terminal domain Atu2636 SM00861 Transketolase, pyrimidine binding domain Atu2637 SM00881 CoA binding domain Atu2660 SM01152 Atu2660 Atu2663 SM00838 Elongation factor G C-terminus Atu2665 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu2670 SM00382 ATPases associated with a variety of cellular activities Atu2677 SM00226 Low molecular weight phosphatase family Atu2680 SM00382 ATPases associated with a variety of cellular activities Atu2686 SM00382 ATPases associated with a variety of cellular activities Atu2691 SM00267 diguanylate cyclase Atu2693 SM00382 ATPases associated with a variety of cellular activities Atu2693 SM00962 SRP54-type protein, GTPase domain Atu2693 SM00963 SRP54-type protein, helical bundle domain Atu2694 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu2696 SM00849 Metallo-beta-lactamase superfamily Atu2697 SM00382 ATPases associated with a variety of cellular activities Atu2697 SM00962 SRP54-type protein, GTPase domain Atu2697 SM00963 SRP54-type protein, helical bundle domain Atu2698 SM00830 Chorismate mutase type II Atu2705 SM00382 ATPases associated with a variety of cellular activities Atu2712 SM00382 ATPases associated with a variety of cellular activities Atu2716 SM00382 ATPases associated with a variety of cellular activities Atu2717 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain Atu2725 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu2725 SM01134 Atu2725 Atu2726 SM00878 Biotin carboxylase C-terminal domain Atu2727 SM00421 helix_turn_helix, Lux Regulon Atu2728 SM00382 ATPases associated with a variety of cellular activities Atu2730 SM01068 Putative carbohydrate binding domain Atu2740 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2740 SM00895 Atu2740 Atu2752 SM00363 S4 RNA-binding domain Atu2753 SM00490 helicase superfamily c-terminal domain Atu2757 SM00938 Nitrogen regulatory protein P-II Atu2759 SM00382 ATPases associated with a variety of cellular activities Atu2759 SM00843 Atu2759 Atu2762 SM00100 Cyclic nucleotide-monophosphate binding domain Atu2763 SM00448 cheY-homologous receiver domain Atu2763 SM00862 Transcriptional regulatory protein, C terminal Atu2765 SM01058 CarD-like/TRCF domain Atu2770 SM00822 Atu2770 Atu2774 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. Atu2774 SM00245 tail specific protease Atu2780 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase Atu2791 SM01329 Atu2791 Atu2805 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu2811 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu2819 SM00382 ATPases associated with a variety of cellular activities Atu2821 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu2821 SM00895 Atu2821 Atu2822 SM00858 Atu2822 Atu2823 SM00798 AICARFT/IMPCHase bienzyme Atu2823 SM00851 MGS-like domain Atu2828 SM00470 ParB-like nuclease domain Atu2831 SM01228 Atu2831 Atu2833 SM00357 Cold shock protein domain Atu2833 SM00382 ATPases associated with a variety of cellular activities Atu2833 SM00959 Rho termination factor, N-terminal domain Atu3011 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu3014 SM00966 SpoVT / AbrB like domain Atu3016 SM00855 Phosphoglycerate mutase family Atu3020 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3020 SM00895 Atu3020 Atu3021 SM00382 ATPases associated with a variety of cellular activities Atu3026 SM00822 Atu3026 Atu3029 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu3035 SM00421 helix_turn_helix, Lux Regulon Atu3038 SM00382 ATPases associated with a variety of cellular activities Atu3052 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu3053 SM00382 ATPases associated with a variety of cellular activities Atu3060 SM00382 ATPases associated with a variety of cellular activities Atu3061 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu3061 SM00267 diguanylate cyclase Atu3061 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu3062 SM00354 helix_turn _helix lactose operon repressor Atu3064 SM00382 ATPases associated with a variety of cellular activities Atu3089 SM00382 ATPases associated with a variety of cellular activities Atu3090 SM00479 Atu3090 Atu3094 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu3094 SM00091 PAS domain Atu3094 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu3099 SM00382 ATPases associated with a variety of cellular activities Atu3103 SM00382 ATPases associated with a variety of cellular activities Atu3104 SM00813 Alpha-L-arabinofuranosidase C-terminus Atu3105 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu3107 SM00354 helix_turn _helix lactose operon repressor Atu3111 SM00382 ATPases associated with a variety of cellular activities Atu3121 SM00357 Cold shock protein domain Atu3129 SM00710 Parallel beta-helix repeats Atu3131 SM00382 ATPases associated with a variety of cellular activities Atu3134 SM00342 helix_turn_helix, arabinose operon control protein Atu3139 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu3140 SM01130 Atu3140 Atu3144 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3144 SM00895 Atu3144 Atu3148 SM00382 ATPases associated with a variety of cellular activities Atu3152 SM00342 helix_turn_helix, arabinose operon control protein Atu3153 SM00342 helix_turn_helix, arabinose operon control protein Atu3161 SM00858 Atu3161 Atu3162 SM00354 helix_turn _helix lactose operon repressor Atu3170 SM00382 ATPases associated with a variety of cellular activities Atu3171 SM00382 ATPases associated with a variety of cellular activities Atu3176 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3176 SM00895 Atu3176 Atu3180 SM00382 ATPases associated with a variety of cellular activities Atu3181 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu3184 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu3188 SM00382 ATPases associated with a variety of cellular activities Atu3193 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu3200 SM00382 ATPases associated with a variety of cellular activities Atu3204 SM00267 diguanylate cyclase Atu3207 SM00052 Putative diguanylate phosphodiesterase Atu3207 SM00267 diguanylate cyclase Atu3210 SM00843 Atu3210 Atu3215 SM00382 ATPases associated with a variety of cellular activities Atu3216 SM00382 ATPases associated with a variety of cellular activities Atu3223 SM00382 ATPases associated with a variety of cellular activities Atu3226 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3226 SM00895 Atu3226 Atu3227 SM00342 helix_turn_helix, arabinose operon control protein Atu3228 SM00481 DNA polymerase alpha chain like domain Atu3236 SM00382 ATPases associated with a variety of cellular activities Atu3244 SM00052 Putative diguanylate phosphodiesterase Atu3244 SM00267 diguanylate cyclase Atu3244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu3245 SM00062 Bacterial periplasmic substrate-binding proteins Atu3246 SM00062 Bacterial periplasmic substrate-binding proteins Atu3252 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3252 SM00895 Atu3252 Atu3256 SM00829 Enoylreductase Atu3262 SM00382 ATPases associated with a variety of cellular activities Atu3264 SM00346 helix_turn_helix isocitrate lyase regulation Atu3276 SM00869 Autotransporter beta-domain Atu3277 SM00903 Flavin reductase like domain Atu3280 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3280 SM00866 Atu3280 Atu3281 SM00382 ATPases associated with a variety of cellular activities Atu3291 SM00344 helix_turn_helix ASNC type Atu3292 SM01005 Alanine racemase, C-terminal domain Atu3294 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3294 SM00895 Atu3294 Atu3296 SM00382 ATPases associated with a variety of cellular activities Atu3296 SM00448 cheY-homologous receiver domain Atu3297 SM00387 Histidine kinase-like ATPases Atu3297 SM00388 His Kinase A (phosphoacceptor) domain Atu3302 SM00028 Tetratricopeptide repeats Atu3318 SM00421 helix_turn_helix, Lux Regulon Atu3322 SM00382 ATPases associated with a variety of cellular activities Atu3328 SM00530 Helix-turn-helix XRE-family like proteins Atu3330 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu3330 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu3337 SM00354 helix_turn _helix lactose operon repressor Atu3341 SM00382 ATPases associated with a variety of cellular activities Atu3349 SM00382 ATPases associated with a variety of cellular activities Atu3354 SM00564 beta-propeller repeat Atu3356 SM00919 Malic enzyme, NAD binding domain Atu3356 SM01274 Atu3356 Atu3357 SM00062 Bacterial periplasmic substrate-binding proteins Atu3360 SM00382 ATPases associated with a variety of cellular activities Atu3363 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu3363 SM00091 PAS domain Atu3363 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu3371 SM00382 ATPases associated with a variety of cellular activities Atu3377 SM00382 ATPases associated with a variety of cellular activities Atu3383 SM00382 ATPases associated with a variety of cellular activities Atu3385 SM00965 Secretin and TonB N terminus short domain Atu3388 SM00382 ATPases associated with a variety of cellular activities Atu3394 SM00382 ATPases associated with a variety of cellular activities Atu3402 SM01329 Atu3402 Atu3412 SM00382 ATPases associated with a variety of cellular activities Atu3413 SM00344 helix_turn_helix ASNC type Atu3415 SM00062 Bacterial periplasmic substrate-binding proteins Atu3416 SM00062 Bacterial periplasmic substrate-binding proteins Atu3417 SM00382 ATPases associated with a variety of cellular activities Atu3425 SM00903 Flavin reductase like domain Atu3436 SM00382 ATPases associated with a variety of cellular activities Atu3437 SM00382 ATPases associated with a variety of cellular activities Atu3453 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu3456 SM00382 ATPases associated with a variety of cellular activities Atu3457 SM00382 ATPases associated with a variety of cellular activities Atu3461 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3461 SM00895 Atu3461 Atu3462 SM00342 helix_turn_helix, arabinose operon control protein Atu3464 SM00822 Atu3464 Atu3465 SM00849 Metallo-beta-lactamase superfamily Atu3466 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu3472 SM00861 Transketolase, pyrimidine binding domain Atu3476 SM00344 helix_turn_helix ASNC type Atu3479 SM00878 Biotin carboxylase C-terminal domain Atu3485 SM01007 Class II Aldolase and Adducin N-terminal domain Atu3486 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu3486 SM01134 Atu3486 Atu3488 SM00382 ATPases associated with a variety of cellular activities Atu3495 SM00052 Putative diguanylate phosphodiesterase Atu3495 SM00267 diguanylate cyclase Atu3501 SM00382 ATPases associated with a variety of cellular activities Atu3520 SM00957 SecA DEAD-like domain Atu3520 SM00958 SecA preprotein cross-linking domain Atu3531 SM00822 Atu3531 Atu3532 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3532 SM00895 Atu3532 Atu3536 SM00382 ATPases associated with a variety of cellular activities Atu3539 SM00507 HNH nucleases Atu3543 SM01120 Atu3543 Atu3568 SM01043 Bacterial transcriptional activator domain Atu3572 SM00530 Helix-turn-helix XRE-family like proteins Atu3574 SM00382 ATPases associated with a variety of cellular activities Atu3581 SM00878 Biotin carboxylase C-terminal domain Atu3587 SM00530 Helix-turn-helix XRE-family like proteins Atu3588 SM00478 endonuclease III Atu3595 SM00893 Electron transfer flavoprotein domain Atu3596 SM00893 Electron transfer flavoprotein domain Atu3603 SM00448 cheY-homologous receiver domain Atu3606 SM00382 ATPases associated with a variety of cellular activities Atu3609 SM00563 Phosphate acyltransferases Atu3614 SM00849 Metallo-beta-lactamase superfamily Atu3621 SM00327 von Willebrand factor (vWF) type A domain Atu3623 SM00271 DnaJ molecular chaperone homology domain Atu3633 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu3658 SM00422 helix_turn_helix, mercury resistance Atu3670 SM00823 Phosphopantetheine attachment site Atu3672 SM00822 Atu3672 Atu3672 SM00823 Phosphopantetheine attachment site Atu3672 SM00825 Beta-ketoacyl synthase Atu3672 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Atu3673 SM00823 Phosphopantetheine attachment site Atu3675 SM00823 Phosphopantetheine attachment site Atu3678 SM00923 MbtH-like protein Atu3681 SM00823 Phosphopantetheine attachment site Atu3681 SM00825 Beta-ketoacyl synthase Atu3681 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. Atu3682 SM00823 Phosphopantetheine attachment site Atu3683 SM00823 Phosphopantetheine attachment site Atu3684 SM00823 Phosphopantetheine attachment site Atu3685 SM00824 Thioesterase Atu3687 SM00965 Secretin and TonB N terminus short domain Atu3691 SM00382 ATPases associated with a variety of cellular activities Atu3695 SM00028 Tetratricopeptide repeats Atu3695 SM00223 APPLE domain Atu3695 SM01359 Atu3695 Atu3695 SM01360 Atu3695 Atu3697 SM00464 Found in ATP-dependent protease La (LON) Atu3705 SM00978 Atu3705 Atu3710 SM00382 ATPases associated with a variety of cellular activities Atu3722 SM00382 ATPases associated with a variety of cellular activities Atu3725 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu3725 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu3732 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu3732 SM01091 Transporter associated domain Atu3736 SM00861 Transketolase, pyrimidine binding domain Atu3737 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain Atu3744 SM00382 ATPases associated with a variety of cellular activities Atu3749 SM00671 Sel1-like repeats. Atu3754 SM01001 AIR carboxylase Atu3757 SM00028 Tetratricopeptide repeats Atu3764 SM00382 ATPases associated with a variety of cellular activities Atu3764 SM00448 cheY-homologous receiver domain Atu3767 SM00267 diguanylate cyclase Atu3770 SM00257 Lysin motif Atu3772 SM00244 prohibitin homologues Atu3774 SM00116 Domain in cystathionine beta-synthase and other proteins. Atu3781 SM00448 cheY-homologous receiver domain Atu3781 SM00862 Transcriptional regulatory protein, C terminal Atu3782 SM00387 Histidine kinase-like ATPases Atu3782 SM00388 His Kinase A (phosphoacceptor) domain Atu3786 SM00448 cheY-homologous receiver domain Atu3786 SM00862 Transcriptional regulatory protein, C terminal Atu3787 SM00387 Histidine kinase-like ATPases Atu3787 SM00388 His Kinase A (phosphoacceptor) domain Atu3791 SM00870 Atu3791 Atu3794 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3794 SM00895 Atu3794 Atu3799 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3799 SM00866 Atu3799 Atu3802 SM00382 ATPases associated with a variety of cellular activities Atu3807 SM00344 helix_turn_helix ASNC type Atu3815 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3815 SM00895 Atu3815 Atu3817 SM00858 Atu3817 Atu3818 SM00382 ATPases associated with a variety of cellular activities Atu3849 SM00857 Resolvase, N terminal domain Atu3854 SM00382 ATPases associated with a variety of cellular activities Atu3865 SM00460 Transglutaminase/protease-like homologues Atu3867 SM00460 Transglutaminase/protease-like homologues Atu3868 SM00327 von Willebrand factor (vWF) type A domain Atu3869 SM00382 ATPases associated with a variety of cellular activities Atu3873 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu3875 SM01133 Atu3875 Atu3880 SM00382 ATPases associated with a variety of cellular activities Atu3883 SM00448 cheY-homologous receiver domain Atu3895 SM00382 ATPases associated with a variety of cellular activities Atu3896 SM00382 ATPases associated with a variety of cellular activities Atu3898 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu3898 SM01134 Atu3898 Atu3900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Atu3903 SM00382 ATPases associated with a variety of cellular activities Atu3907 SM00448 cheY-homologous receiver domain Atu3907 SM01012 Atu3907 Atu3908 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3908 SM00895 Atu3908 Atu3912 SM00796 Allophanate hydrolase subunit 1 Atu3912 SM00797 Allophanate hydrolase subunit 2 Atu3913 SM00878 Biotin carboxylase C-terminal domain Atu3914 SM00642 Alpha-amylase domain Atu3915 SM00422 helix_turn_helix, mercury resistance Atu3923 SM00470 ParB-like nuclease domain Atu3927 SM01119 Atu3927 Atu3936 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3936 SM00866 Atu3936 Atu3948 SM01119 Atu3948 Atu3956 SM00382 ATPases associated with a variety of cellular activities Atu3960 SM01130 Atu3960 Atu3961 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3961 SM00895 Atu3961 Atu3963 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu3963 SM00895 Atu3963 Atu3970 SM00382 ATPases associated with a variety of cellular activities Atu3976 SM00028 Tetratricopeptide repeats Atu3986 SM00479 Atu3986 Atu3995 SM00342 helix_turn_helix, arabinose operon control protein Atu3997 SM00729 Elongator protein 3, MiaB family, Radical SAM Atu3997 SM00876 Biotin and Thiamin Synthesis associated domain Atu4006 SM00344 helix_turn_helix ASNC type Atu4013 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain Atu4014 SM00530 Helix-turn-helix XRE-family like proteins Atu4018 SM00387 Histidine kinase-like ATPases Atu4018 SM00388 His Kinase A (phosphoacceptor) domain Atu4019 SM00448 cheY-homologous receiver domain Atu4019 SM00862 Transcriptional regulatory protein, C terminal Atu4025 SM00382 ATPases associated with a variety of cellular activities Atu4032 SM00382 ATPases associated with a variety of cellular activities Atu4034 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu4034 SM00387 Histidine kinase-like ATPases Atu4035 SM00421 helix_turn_helix, Lux Regulon Atu4035 SM00448 cheY-homologous receiver domain Atu4044 SM00382 ATPases associated with a variety of cellular activities Atu4047 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu4047 SM00091 PAS domain Atu4047 SM00387 Histidine kinase-like ATPases Atu4047 SM00388 His Kinase A (phosphoacceptor) domain Atu4047 SM00448 cheY-homologous receiver domain Atu4063 SM00028 Tetratricopeptide repeats Atu4073 SM00642 Alpha-amylase domain Atu4077 SM00642 Alpha-amylase domain Atu4082 SM00344 helix_turn_helix ASNC type Atu4087 SM00829 Enoylreductase Atu4089 SM00382 ATPases associated with a variety of cellular activities Atu4090 SM00382 ATPases associated with a variety of cellular activities Atu4100 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu4104 SM00316 Ribosomal protein S1-like RNA-binding domain Atu4108 SM00474 3'-5' exonuclease Atu4110 SM00822 Atu4110 Atu4116 SM00382 ATPases associated with a variety of cellular activities Atu4117 SM00382 ATPases associated with a variety of cellular activities Atu4118 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4118 SM00895 Atu4118 Atu4120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu4124 SM00382 ATPases associated with a variety of cellular activities Atu4125 SM00382 ATPases associated with a variety of cellular activities Atu4132 SM00342 helix_turn_helix, arabinose operon control protein Atu4135 SM00564 beta-propeller repeat Atu4146 SM01154 Atu4146 Atu4149 SM00984 UDP binding domain Atu4154 SM00062 Bacterial periplasmic substrate-binding proteins Atu4156 SM00382 ATPases associated with a variety of cellular activities Atu4159 SM00344 helix_turn_helix ASNC type Atu4162 SM00448 cheY-homologous receiver domain Atu4163 SM00911 HWE histidine kinase Atu4164 SM00911 HWE histidine kinase Atu4171 SM00487 DEAD-like helicases superfamily Atu4171 SM00490 helicase superfamily c-terminal domain Atu4173 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu4174 SM00937 Atu4174 Atu4177 SM00382 ATPases associated with a variety of cellular activities Atu4177 SM01086 C-terminal, D2-small domain, of ClpB protein Atu4189 SM01130 Atu4189 Atu4191 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4191 SM00895 Atu4191 Atu4195 SM00382 ATPases associated with a variety of cellular activities Atu4196 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu4204 SM00342 helix_turn_helix, arabinose operon control protein Atu4211 SM00382 ATPases associated with a variety of cellular activities Atu4214 SM00357 Cold shock protein domain Atu4215 SM00864 Tubulin/FtsZ family, GTPase domain Atu4216 SM00825 Beta-ketoacyl synthase Atu4225 SM00342 helix_turn_helix, arabinose operon control protein Atu4226 SM00530 Helix-turn-helix XRE-family like proteins Atu4230 SM01230 Atu4230 Atu4232 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4232 SM00895 Atu4232 Atu4233 SM00062 Bacterial periplasmic substrate-binding proteins Atu4235 SM00382 ATPases associated with a variety of cellular activities Atu4239 SM00903 Flavin reductase like domain Atu4246 SM00382 ATPases associated with a variety of cellular activities Atu4249 SM00382 ATPases associated with a variety of cellular activities Atu4254 SM00354 helix_turn _helix lactose operon repressor Atu4256 SM00382 ATPases associated with a variety of cellular activities Atu4261 SM00382 ATPases associated with a variety of cellular activities Atu4266 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4273 SM00878 Biotin carboxylase C-terminal domain Atu4275 SM00796 Allophanate hydrolase subunit 1 Atu4276 SM00797 Allophanate hydrolase subunit 2 Atu4283 SM00382 ATPases associated with a variety of cellular activities Atu4284 SM00062 Bacterial periplasmic substrate-binding proteins Atu4297 SM00342 helix_turn_helix, arabinose operon control protein Atu4300 SM00421 helix_turn_helix, Lux Regulon Atu4300 SM00448 cheY-homologous receiver domain Atu4304 SM00100 Cyclic nucleotide-monophosphate binding domain Atu4305 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu4305 SM00091 PAS domain Atu4305 SM00387 Histidine kinase-like ATPases Atu4305 SM00388 His Kinase A (phosphoacceptor) domain Atu4306 SM00448 cheY-homologous receiver domain Atu4307 SM00849 Metallo-beta-lactamase superfamily Atu4309 SM00342 helix_turn_helix, arabinose operon control protein Atu4318 SM00829 Enoylreductase Atu4319 SM00342 helix_turn_helix, arabinose operon control protein Atu4321 SM00382 ATPases associated with a variety of cellular activities Atu4331 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain Atu4335 SM00240 Forkhead associated domain Atu4344 SM00382 ATPases associated with a variety of cellular activities Atu4344 SM01086 C-terminal, D2-small domain, of ClpB protein Atu4353 SM00052 Putative diguanylate phosphodiesterase Atu4353 SM00267 diguanylate cyclase Atu4355 SM01091 Transporter associated domain Atu4358 SM00382 ATPases associated with a variety of cellular activities Atu4364 SM00354 helix_turn _helix lactose operon repressor Atu4370 SM00382 ATPases associated with a variety of cellular activities Atu4373 SM00354 helix_turn _helix lactose operon repressor Atu4380 SM00100 Cyclic nucleotide-monophosphate binding domain Atu4380 SM00419 helix_turn_helix, cAMP Regulatory protein Atu4386 SM00327 von Willebrand factor (vWF) type A domain Atu4403 SM00382 ATPases associated with a variety of cellular activities Atu4408 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Atu4413 SM00382 ATPases associated with a variety of cellular activities Atu4420 SM00354 helix_turn _helix lactose operon repressor Atu4424 SM00382 ATPases associated with a variety of cellular activities Atu4434 SM00382 ATPases associated with a variety of cellular activities Atu4435 SM00382 ATPases associated with a variety of cellular activities Atu4445 SM00382 ATPases associated with a variety of cellular activities Atu4450 SM00382 ATPases associated with a variety of cellular activities Atu4457 SM00478 endonuclease III Atu4459 SM00342 helix_turn_helix, arabinose operon control protein Atu4465 SM00346 helix_turn_helix isocitrate lyase regulation Atu4470 SM00382 ATPases associated with a variety of cellular activities Atu4481 SM00354 helix_turn _helix lactose operon repressor Atu4487 SM00382 ATPases associated with a variety of cellular activities Atu4487 SM00930 Atu4487 Atu4490 SM00052 Putative diguanylate phosphodiesterase Atu4490 SM00267 diguanylate cyclase Atu4491 SM00450 Rhodanese Homology Domain Atu4492 SM00880 Atu4492 Atu4493 SM01118 Atu4493 Atu4501 SM00320 WD40 repeats Atu4502 SM00833 Cobalamin synthesis protein cobW C-terminal domain Atu4504 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu4505 SM00354 helix_turn _helix lactose operon repressor Atu4515 SM00382 ATPases associated with a variety of cellular activities Atu4516 SM00382 ATPases associated with a variety of cellular activities Atu4521 SM00342 helix_turn_helix, arabinose operon control protein Atu4521 SM00871 Bacterial transcription activator, effector binding domain Atu4526 SM00382 ATPases associated with a variety of cellular activities Atu4533 SM00382 ATPases associated with a variety of cellular activities Atu4534 SM00062 Bacterial periplasmic substrate-binding proteins Atu4535 SM00062 Bacterial periplasmic substrate-binding proteins Atu4545 SM00342 helix_turn_helix, arabinose operon control protein Atu4546 SM00346 helix_turn_helix isocitrate lyase regulation Atu4547 SM00882 Coenzyme A transferase Atu4548 SM00882 Coenzyme A transferase Atu4550 SM00354 helix_turn _helix lactose operon repressor Atu4556 SM00354 helix_turn _helix lactose operon repressor Atu4559 SM00382 ATPases associated with a variety of cellular activities Atu4560 SM00710 Parallel beta-helix repeats Atu4566 SM00014 Acid phosphatase homologues Atu4569 SM00382 ATPases associated with a variety of cellular activities Atu4575 SM00342 helix_turn_helix, arabinose operon control protein Atu4578 SM00382 ATPases associated with a variety of cellular activities Atu4581 SM00903 Flavin reductase like domain Atu4598 SM00382 ATPases associated with a variety of cellular activities Atu4599 SM00346 helix_turn_helix isocitrate lyase regulation Atu4600 SM00382 ATPases associated with a variety of cellular activities Atu4620 SM00382 ATPases associated with a variety of cellular activities Atu4621 SM00382 ATPases associated with a variety of cellular activities Atu4624 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4624 SM00895 Atu4624 Atu4628 SM00052 Putative diguanylate phosphodiesterase Atu4628 SM00267 diguanylate cyclase Atu4629 SM00822 Atu4629 Atu4631 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Atu4638 SM00448 cheY-homologous receiver domain Atu4638 SM00862 Transcriptional regulatory protein, C terminal Atu4639 SM00387 Histidine kinase-like ATPases Atu4639 SM00388 His Kinase A (phosphoacceptor) domain Atu4644 SM00342 helix_turn_helix, arabinose operon control protein Atu4650 SM00382 ATPases associated with a variety of cellular activities Atu4659 SM00342 helix_turn_helix, arabinose operon control protein Atu4664 SM00382 ATPases associated with a variety of cellular activities Atu4667 SM00382 ATPases associated with a variety of cellular activities Atu4671 SM00448 cheY-homologous receiver domain Atu4673 SM00864 Tubulin/FtsZ family, GTPase domain Atu4673 SM00865 Tubulin/FtsZ family, C-terminal domain Atu4674 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4674 SM00895 Atu4674 Atu4675 SM01130 Atu4675 Atu4678 SM00062 Bacterial periplasmic substrate-binding proteins Atu4681 SM00382 ATPases associated with a variety of cellular activities Atu4685 SM00354 helix_turn _helix lactose operon repressor Atu4687 SM00062 Bacterial periplasmic substrate-binding proteins Atu4690 SM00382 ATPases associated with a variety of cellular activities Atu4692 SM00052 Putative diguanylate phosphodiesterase Atu4692 SM00267 diguanylate cyclase Atu4700 SM00382 ATPases associated with a variety of cellular activities Atu4701 SM00382 ATPases associated with a variety of cellular activities Atu4702 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4702 SM00895 Atu4702 Atu4703 SM00903 Flavin reductase like domain Atu4707 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region Atu4708 SM00926 Molybdopterin oxidoreductase Fe4S4 domain Atu4708 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region Atu4711 SM00387 Histidine kinase-like ATPases Atu4712 SM00448 cheY-homologous receiver domain Atu4712 SM00862 Transcriptional regulatory protein, C terminal Atu4716 SM00091 PAS domain Atu4716 SM00421 helix_turn_helix, Lux Regulon Atu4718 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4718 SM00895 Atu4718 Atu4723 SM00382 ATPases associated with a variety of cellular activities Atu4728 SM00382 ATPases associated with a variety of cellular activities Atu4729 SM00382 ATPases associated with a variety of cellular activities Atu4730 SM00972 Spore Coat Protein U domain Atu4733 SM00972 Spore Coat Protein U domain Atu4736 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu4736 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu4740 SM00829 Enoylreductase Atu4741 SM00382 ATPases associated with a variety of cellular activities Atu4742 SM00028 Tetratricopeptide repeats Atu4743 SM00354 helix_turn _helix lactose operon repressor Atu4745 SM00382 ATPases associated with a variety of cellular activities Atu4752 SM00382 ATPases associated with a variety of cellular activities Atu4755 SM00062 Bacterial periplasmic substrate-binding proteins Atu4760 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu4763 SM00344 helix_turn_helix ASNC type Atu4771 SM00835 Cupin Atu4773 SM00448 cheY-homologous receiver domain Atu4774 SM00421 helix_turn_helix, Lux Regulon Atu4774 SM00448 cheY-homologous receiver domain Atu4775 SM00387 Histidine kinase-like ATPases Atu4775 SM00388 His Kinase A (phosphoacceptor) domain Atu4781 SM00387 Histidine kinase-like ATPases Atu4782 SM00448 cheY-homologous receiver domain Atu4782 SM00862 Transcriptional regulatory protein, C terminal Atu4786 SM00382 ATPases associated with a variety of cellular activities Atu4795 SM00421 helix_turn_helix, Lux Regulon Atu4803 SM00421 helix_turn_helix, Lux Regulon Atu4805 SM00387 Histidine kinase-like ATPases Atu4805 SM00388 His Kinase A (phosphoacceptor) domain Atu4805 SM00421 helix_turn_helix, Lux Regulon Atu4805 SM00448 cheY-homologous receiver domain Atu4818 SM00344 helix_turn_helix ASNC type Atu4821 SM00822 Atu4821 Atu4824 SM00346 helix_turn_helix isocitrate lyase regulation Atu4830 SM00953 Atu4830 Atu4834 SM01350 Atu4834 Atu4841 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu4841 SM01134 Atu4841 Atu4843 SM00382 ATPases associated with a variety of cellular activities Atu4848 SM01133 Atu4848 Atu4856 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Atu4860 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Atu4861 SM00382 ATPases associated with a variety of cellular activities Atu4864 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu4870 SM00829 Enoylreductase Atu4880 SM00342 helix_turn_helix, arabinose operon control protein Atu5001 SM00470 ParB-like nuclease domain Atu5005 SM00382 ATPases associated with a variety of cellular activities Atu5006 SM00062 Bacterial periplasmic substrate-binding proteins Atu5006 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Atu5007 SM00354 helix_turn _helix lactose operon repressor Atu5040 SM00470 ParB-like nuclease domain Atu5041 SM00470 ParB-like nuclease domain Atu5042 SM00857 Resolvase, N terminal domain Atu5049 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Atu5050 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen Atu5062 SM00382 ATPases associated with a variety of cellular activities Atu5064 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu5067 SM01130 Atu5067 Atu5068 SM00382 ATPases associated with a variety of cellular activities Atu5075 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu5075 SM00895 Atu5075 Atu5078 SM00354 helix_turn _helix lactose operon repressor Atu5083 SM00382 ATPases associated with a variety of cellular activities Atu5085 SM00849 Metallo-beta-lactamase superfamily Atu5086 SM00382 ATPases associated with a variety of cellular activities Atu5087 SM00911 HWE histidine kinase Atu5100 SM00481 DNA polymerase alpha chain like domain Atu5106 SM00411 bacterial (prokaryotic) histone like domain Atu5107 SM00773 Proposed nucleic acid binding domain Atu5113 SM00530 Helix-turn-helix XRE-family like proteins Atu5117 SM00748 Higher Eukarytoes and Prokaryotes Nucleotide-binding domain Atu5119 SM00862 Transcriptional regulatory protein, C terminal Atu5121 SM00862 Transcriptional regulatory protein, C terminal Atu5125 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu5125 SM00895 Atu5125 Atu5126 SM00382 ATPases associated with a variety of cellular activities Atu5131 SM00382 ATPases associated with a variety of cellular activities Atu5136 SM00346 helix_turn_helix isocitrate lyase regulation Atu5139 SM00849 Metallo-beta-lactamase superfamily Atu5141 SM00342 helix_turn_helix, arabinose operon control protein Atu5155 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu5165 SM00382 ATPases associated with a variety of cellular activities Atu5175 SM00448 cheY-homologous receiver domain Atu5175 SM00862 Transcriptional regulatory protein, C terminal Atu5176 SM00387 Histidine kinase-like ATPases Atu5176 SM00388 His Kinase A (phosphoacceptor) domain Atu5178 SM00382 ATPases associated with a variety of cellular activities Atu5182 SM00829 Enoylreductase Atu5185 SM00822 Atu5185 Atu5188 SM00829 Enoylreductase Atu5194 SM00422 helix_turn_helix, mercury resistance Atu5202 SM00829 Enoylreductase Atu5203 SM00849 Metallo-beta-lactamase superfamily Atu5211 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu5213 SM00829 Enoylreductase Atu5214 SM00822 Atu5214 Atu5218 SM00382 ATPases associated with a variety of cellular activities Atu5229 SM00903 Flavin reductase like domain Atu5230 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. Atu5233 SM01119 Atu5233 Atu5236 SM00382 ATPases associated with a variety of cellular activities Atu5237 SM00062 Bacterial periplasmic substrate-binding proteins Atu5239 SM00354 helix_turn _helix lactose operon repressor Atu5240 SM00829 Enoylreductase Atu5243 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu5243 SM01134 Atu5243 Atu5248 SM00382 ATPases associated with a variety of cellular activities Atu5256 SM00382 ATPases associated with a variety of cellular activities Atu5257 SM00382 ATPases associated with a variety of cellular activities Atu5266 SM00387 Histidine kinase-like ATPases Atu5266 SM01049 Atu5266 Atu5267 SM00421 helix_turn_helix, Lux Regulon Atu5267 SM00448 cheY-homologous receiver domain Atu5273 SM00347 helix_turn_helix multiple antibiotic resistance protein Atu5274 SM00342 helix_turn_helix, arabinose operon control protein Atu5284 SM00642 Alpha-amylase domain Atu5311 SM00965 Secretin and TonB N terminus short domain Atu5316 SM00382 ATPases associated with a variety of cellular activities Atu5321 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor Atu5324 SM00829 Enoylreductase Atu5338 SM00342 helix_turn_helix, arabinose operon control protein Atu5341 SM00342 helix_turn_helix, arabinose operon control protein Atu5347 SM00382 ATPases associated with a variety of cellular activities Atu5354 SM00869 Autotransporter beta-domain Atu5364 SM00869 Autotransporter beta-domain Atu5372 SM00267 diguanylate cyclase Atu5375 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu5375 SM00091 PAS domain Atu5375 SM00911 HWE histidine kinase Atu5377 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu5377 SM00091 PAS domain Atu5378 SM00448 cheY-homologous receiver domain Atu5390 SM00342 helix_turn_helix, arabinose operon control protein Atu5391 SM00822 Atu5391 Atu5393 SM00354 helix_turn _helix lactose operon repressor Atu5394 SM01130 Atu5394 Atu5398 SM01130 Atu5398 Atu5404 SM00895 Atu5404 Atu5406 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu5406 SM00895 Atu5406 Atu5409 SM00062 Bacterial periplasmic substrate-binding proteins Atu5410 SM00382 ATPases associated with a variety of cellular activities Atu5415 SM00903 Flavin reductase like domain Atu5423 SM00382 ATPases associated with a variety of cellular activities Atu5433 SM00354 helix_turn _helix lactose operon repressor Atu5438 SM00822 Atu5438 Atu5442 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu5442 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain Atu5444 SM00822 Atu5444 Atu5447 SM00829 Enoylreductase Atu5448 SM00773 Proposed nucleic acid binding domain Atu5452 SM00382 ATPases associated with a variety of cellular activities Atu5457 SM01130 Atu5457 Atu5458 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu5462 SM00382 ATPases associated with a variety of cellular activities Atu5464 SM00346 helix_turn_helix isocitrate lyase regulation Atu5478 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain Atu5480 SM00382 ATPases associated with a variety of cellular activities Atu5482 SM00062 Bacterial periplasmic substrate-binding proteins Atu5483 SM00345 helix_turn_helix gluconate operon transcriptional repressor Atu5483 SM00895 Atu5483 Atu5491 SM01060 Atu5491 Atu5499 SM01092 CO dehydrogenase flavoprotein C-terminal domain Atu5500 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain Atu5505 SM00448 cheY-homologous receiver domain Atu5505 SM00862 Transcriptional regulatory protein, C terminal Atu5506 SM00387 Histidine kinase-like ATPases Atu5509 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu5509 SM00091 PAS domain Atu5509 SM00387 Histidine kinase-like ATPases Atu5509 SM00388 His Kinase A (phosphoacceptor) domain Atu5509 SM00448 cheY-homologous receiver domain Atu5510 SM00382 ATPases associated with a variety of cellular activities Atu5513 SM00357 Cold shock protein domain Atu5514 SM00271 DnaJ molecular chaperone homology domain Atu5521 SM00382 ATPases associated with a variety of cellular activities Atu5525 SM00382 ATPases associated with a variety of cellular activities Atu5528 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu5528 SM00091 PAS domain Atu5528 SM00911 HWE histidine kinase Atu5530 SM01012 Atu5530 Atu5534 SM00382 ATPases associated with a variety of cellular activities Atu5535 SM00382 ATPases associated with a variety of cellular activities Atu5543 SM00342 helix_turn_helix, arabinose operon control protein Atu5547 SM00849 Metallo-beta-lactamase superfamily Atu6027 SM00062 Bacterial periplasmic substrate-binding proteins Atu6027 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. Atu6028 SM00382 ATPases associated with a variety of cellular activities Atu6038 SM00382 ATPases associated with a variety of cellular activities Atu6044 SM00470 ParB-like nuclease domain Atu6046 SM00857 Resolvase, N terminal domain Atu6048 SM00487 DEAD-like helicases superfamily Atu6048 SM00491 Atu6048 Atu6051 SM00953 Atu6051 Atu6058 SM00382 ATPases associated with a variety of cellular activities Atu6059 SM00062 Bacterial periplasmic substrate-binding proteins Atu6069 SM00382 ATPases associated with a variety of cellular activities Atu6071 SM00849 Metallo-beta-lactamase superfamily Atu6074 SM00382 ATPases associated with a variety of cellular activities Atu6082 SM00382 ATPases associated with a variety of cellular activities Atu6085 SM00062 Bacterial periplasmic substrate-binding proteins Atu6087 SM00382 ATPases associated with a variety of cellular activities Atu6089 SM00450 Rhodanese Homology Domain Atu6093 SM00481 DNA polymerase alpha chain like domain Atu6098 SM00530 Helix-turn-helix XRE-family like proteins Atu6101 SM00487 DEAD-like helicases superfamily Atu6103 SM00470 ParB-like nuclease domain Atu6120 SM00411 bacterial (prokaryotic) histone like domain Atu6121 SM00773 Proposed nucleic acid binding domain Atu6132 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) Atu6132 SM00091 PAS domain Atu6132 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Atu6134 SM00421 helix_turn_helix, Lux Regulon Atu6135 SM00642 Alpha-amylase domain Atu6138 SM00420 helix_turn_helix, Deoxyribose operon repressor Atu6138 SM01134 Atu6138 Atu6140 SM00382 ATPases associated with a variety of cellular activities Atu6141 SM00382 ATPases associated with a variety of cellular activities Atu6166 SM00387 Histidine kinase-like ATPases Atu6166 SM00388 His Kinase A (phosphoacceptor) domain Atu6178 SM00448 cheY-homologous receiver domain Atu6178 SM00862 Transcriptional regulatory protein, C terminal Atu6185 SM00795 Agrobacterium VirD5 protein Atu8147 SM00257 Lysin motif Atu8165 SM00992 Hemimethylated DNA-binding protein YccV like Atu8205 SM00287 Bacterial SH3 domain homologues